GenomeNet

Database: RefSeq
Entry: NC_016944
LinkDB: NC_016944
Original site: NC_016944 
LOCUS       NC_016944            3007450 bp    DNA     circular CON 06-JUL-2013
DEFINITION  Vibrio cholerae IEC224 chromosome I, complete sequence.
ACCESSION   NC_016944
VERSION     NC_016944.1  GI:379739908
DBLINK      Project: 89389
            BioProject: PRJNA89389
KEYWORDS    RefSeq.
SOURCE      Vibrio cholerae IEC224
  ORGANISM  Vibrio cholerae IEC224
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3007450)
  AUTHORS   de Sa Morais,L.L., Garza,D.R., Loureiro,E.C., Nunes,K.N.,
            Vellasco,R.S., da Silva,C.P., Nunes,M.R., Thompson,C.C.,
            Vicente,A.C. and Santos,E.C.
  TITLE     Complete genome sequence of a sucrose-nonfermenting epidemic strain
            of Vibrio cholerae O1 from Brazil
  JOURNAL   J. Bacteriol. 194 (10), 2772 (2012)
   PUBMED   22535947
REFERENCE   2  (bases 1 to 3007450)
  AUTHORS   Garza,D.R., Thompson,C.C., Loureiro,E.C., Dutilh,B.E., Inada,D.T.,
            Junior,E.C., Cardoso,J.F., Nunes,M.R., de Lima,C.P.,
            Silvestre,R.V., Nunes,K.N., Santos,E.C., Edwards,R.A., Vicente,A.C.
            and de Sa Morais,L.L.
  TITLE     Genome-wide study of the defective sucrose fermenter strain of
            Vibrio cholerae from the Latin American cholera epidemic
  JOURNAL   PLoS ONE 7 (5), E37283 (2012)
   PUBMED   22662140
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3007450)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2012) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   4  (bases 1 to 3007450)
  AUTHORS   Garza,D.R. Jr., Thompson,C.C., Loureiro,E.C.B., Dutilh,B.E.,
            Inada,D.T., Junior,E.C.S., Cardoso,J.F., Nunes,M.R.T., de
            Lima,C.P.S., Vellasco,R.S., Nunes,K.N.B., Santos,E.C.O.,
            Edwards,R.A., Vicente,A.C.P. and Morais,L.L.C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2012) Bioinformatics Core - Center for
            Technological Innovations, Evandro Chagas Institute, Rodovia BR-316
            km 7 s/n - Levilandia, Ananindeua, Para 67030-000, Brazil
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to CP003330.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3007450
                     /organism="Vibrio cholerae IEC224"
                     /mol_type="genomic DNA"
                     /strain="IEC224"
                     /db_xref="taxon:1134456"
                     /chromosome="I"
                     /country="Brazil: Belem"
                     /note="from Amazon cholera epidemic of the 1990's"
     gene            complement(372..806)
                     /locus_tag="O3Y_00005"
                     /db_xref="GeneID:11915667"
     CDS             complement(372..806)
                     /locus_tag="O3Y_00005"
                     /note="COG0716 Flavodoxins"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="YP_005331878.1"
                     /db_xref="GI:379739909"
                     /db_xref="GeneID:11915667"
                     /translation="MIHIITGSTLGGAEYVGDHLSDLLQEQGFDTKIHNQPNMSEIPA
                     KGTWLIITSTHGAGEYPDNIQPFIQALQNTPPNTSALRYAVVAIGDSSYDTFCAAGKH
                     AYQLLGDIGAKPLANCFTIDVQEHPVPEDAAEAWLKRVINRF"
     misc_feature    complement(375..806)
                     /locus_tag="O3Y_00005"
                     /note="FMN-binding protein MioC; Provisional; Region:
                     PRK09004"
                     /db_xref="CDD:181608"
     gene            complement(816..2177)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /db_xref="GeneID:11915669"
     CDS             complement(816..2177)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="COG0486 Predicted GTPase"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA modification GTPase TrmE"
                     /protein_id="YP_005331879.1"
                     /db_xref="GI:379739910"
                     /db_xref="GeneID:11915669"
                     /translation="MTTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTLRPRY
                     AEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGV
                     RPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVE
                     SLIHLRIYVEAAIDFPEEEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKV
                     VIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA
                     SDAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRN
                     KADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQEGGFMARRRHL
                     DALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFC
                     IGK"
     misc_feature    complement(819..2177)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="tRNA modification GTPase TrmE; Reviewed; Region:
                     trmE; PRK05291"
                     /db_xref="CDD:235392"
     misc_feature    complement(1821..2165)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="GTP-binding protein TrmE N-terminus; Region:
                     TrmE_N; pfam10396"
                     /db_xref="CDD:204472"
     misc_feature    complement(1050..1541)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="trmE is a tRNA modification GTPase; Region: trmE;
                     cd04164"
                     /db_xref="CDD:206727"
     misc_feature    complement(1491..1514)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="G1 box; other site"
                     /db_xref="CDD:206727"
     misc_feature    complement(order(1101..1109,1167..1169,1173..1178,
                     1488..1499,1503..1505))
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206727"
     misc_feature    complement(1419..1469)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206727"
     misc_feature    complement(1428..1430)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="G2 box; other site"
                     /db_xref="CDD:206727"
     misc_feature    complement(order(1296..1340,1344..1376))
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206727"
     misc_feature    complement(1362..1373)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="G3 box; other site"
                     /db_xref="CDD:206727"
     misc_feature    complement(1167..1178)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="G4 box; other site"
                     /db_xref="CDD:206727"
     misc_feature    complement(1101..1109)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="G5 box; other site"
                     /db_xref="CDD:206727"
     misc_feature    complement(828..1046)
                     /gene="trmE"
                     /locus_tag="O3Y_00010"
                     /note="Catalytic cysteine-containing C-terminus of GTPase,
                     MnmE; Region: GTPase_Cys_C; pfam12631"
                     /db_xref="CDD:257176"
     gene            complement(2271..3896)
                     /locus_tag="O3Y_00015"
                     /db_xref="GeneID:11915671"
     CDS             complement(2271..3896)
                     /locus_tag="O3Y_00015"
                     /note="COG0706 Preprotein translocase subunit YidC"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase"
                     /protein_id="YP_005331880.1"
                     /db_xref="GI:379739911"
                     /db_xref="GeneID:11915671"
                     /translation="MDSQRNILLIALALVSFLLFQQWQVAKNPAPQATQQAQSTGAAP
                     APSFSDELDPTPAQNVAAKAKTITVSTDVLTLSIDTLGGDVVSAKLNQYSEELNSPES
                     FVLLQNTQGHQFIAQSGLVGPQGIDVTSNNRPAYQVSADSFTLAEGQDELRIPMTYQA
                     NGIDYTKTFILKRGSYAVDVVFDVANNSGSEATLGMYAHLRQNLLDSGGNLAMPTYRG
                     GAYSTSDVRYKKYSFDDMKDRNLSAPNDVTVNWVAMIQHYFASAWIPRDEPQAQLYSR
                     VINNLGDMGIRTPNKTIANGDKAEFEATLWVGPKLQDQMAATAPNLDLVVDYGWLWFI
                     AKPLHWLLSVIQTFVGNWGVAIICLTFIVRGAMYPLTKAQYTSMAKMRMLQPKLQAMR
                     ERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESVELRHSPFF
                     GWIHDLSAQDPYYILPLLMGASMFVIQKMSPTTITDPMQQKIMTFMPVMFTFFFLWFP
                     SGLVLYWLVSNIVTLIQQTLIYKALEKKGLHSK"
     misc_feature    complement(2274..3896)
                     /locus_tag="O3Y_00015"
                     /note="membrane protein insertase; Provisional; Region:
                     PRK01318"
                     /db_xref="CDD:234942"
     misc_feature    complement(2874..3701)
                     /locus_tag="O3Y_00015"
                     /note="YidC periplasmic domain; Region: YidC_periplas;
                     pfam14849"
                     /db_xref="CDD:258986"
     misc_feature    complement(2274..3155)
                     /locus_tag="O3Y_00015"
                     /note="Preprotein translocase subunit YidC [Intracellular
                     trafficking and secretion]; Region: YidC; COG0706"
                     /db_xref="CDD:223778"
     gene            complement(3899..4156)
                     /locus_tag="O3Y_00020"
                     /db_xref="GeneID:11915673"
     CDS             complement(3899..4156)
                     /locus_tag="O3Y_00020"
                     /note="COG0759 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331881.1"
                     /db_xref="GI:379739912"
                     /db_xref="GeneID:11915673"
                     /translation="MATPLSPFSWLAIGIVKLYQWFISPLIGPRCRFTPTCSTYAIEA
                     LRAHGFIKGCWLSTKRLLKCHPLNEGGFDPVPPVQKQDRDK"
     misc_feature    complement(3932..4135)
                     /locus_tag="O3Y_00020"
                     /note="Haemolytic domain; Region: Haemolytic; pfam01809"
                     /db_xref="CDD:250883"
     gene            complement(4123..4479)
                     /gene="rnpA"
                     /locus_tag="O3Y_00025"
                     /db_xref="GeneID:11915675"
     CDS             complement(4123..4479)
                     /gene="rnpA"
                     /locus_tag="O3Y_00025"
                     /EC_number="3.1.26.5"
                     /note="COG0594 RNase P protein component"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P"
                     /protein_id="YP_005331882.1"
                     /db_xref="GI:379739913"
                     /db_xref="GeneID:11915675"
                     /translation="MSTYAFNRELRLLTPEHYQKVFQQAHSAGSPHLTIIARANNLSH
                     PRLGLAVPKKQIKTAVGRNRFKRICRESFRLHQNQLANKDFVVIAKKSAQDLSNEELF
                     NLLGKLWQRLSRPSRG"
     misc_feature    complement(4138..4479)
                     /gene="rnpA"
                     /locus_tag="O3Y_00025"
                     /note="ribonuclease P; Reviewed; Region: rnpA; PRK01732"
                     /db_xref="CDD:179327"
     gene            complement(4492..4629)
                     /locus_tag="O3Y_00030"
                     /db_xref="GeneID:11915677"
     CDS             complement(4492..4629)
                     /locus_tag="O3Y_00030"
                     /note="COG0230 Ribosomal protein L34"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="YP_005331883.1"
                     /db_xref="GI:379739914"
                     /db_xref="GeneID:11915677"
                     /translation="MSKRTFQPSVLKRKRTHGFRARMATANGRKVLNARRAKGRKRLS
                     K"
     misc_feature    complement(4498..4626)
                     /locus_tag="O3Y_00030"
                     /note="50S ribosomal protein L34; Reviewed; Region: rpmH;
                     PRK00399"
                     /db_xref="CDD:179004"
     gene            complement(4871..5608)
                     /locus_tag="O3Y_00035"
                     /db_xref="GeneID:11915679"
     CDS             complement(4871..5608)
                     /locus_tag="O3Y_00035"
                     /note="COG1126 ABC-type polar amino acid transport system,
                     ATPase component"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="YP_005331884.1"
                     /db_xref="GI:379739915"
                     /db_xref="GeneID:11915679"
                     /translation="MIKLQNIHKRFGTSEVLKGIDLEIQRGEIVVIIGSSGTGKSTLL
                     RCVNFLEQADQGSIRIDELTVDTQKHTKADVLALRRKTGFVFQNYALFAHLTARQNIA
                     EALITVRGWKKAQAHQRAQQILDDIGLGDKGDSYPAALSGGQQQRVGIGRAMALQPEL
                     LLFDEPTSALDPEWVGEVLALMKKLATQHQTMLVVTHEMQFAKEVADRVIFMAEGKIV
                     EQGSPQDIFDHPQDPRLRKFLNQVGIR"
     misc_feature    complement(4883..5608)
                     /locus_tag="O3Y_00035"
                     /note="ABC-type polar amino acid transport system, ATPase
                     component [Amino acid transport and metabolism]; Region:
                     GlnQ; COG1126"
                     /db_xref="CDD:224051"
     misc_feature    complement(4958..5605)
                     /locus_tag="O3Y_00035"
                     /note="ATP-binding cassette domain of the histidine and
                     glutamine transporters; Region: ABC_HisP_GlnQ; cd03262"
                     /db_xref="CDD:213229"
     misc_feature    complement(5486..5509)
                     /locus_tag="O3Y_00035"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213229"
     misc_feature    complement(order(5018..5020,5114..5119,5348..5350,
                     5483..5491,5495..5500))
                     /locus_tag="O3Y_00035"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213229"
     misc_feature    complement(5348..5359)
                     /locus_tag="O3Y_00035"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213229"
     misc_feature    complement(5162..5191)
                     /locus_tag="O3Y_00035"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213229"
     misc_feature    complement(5114..5131)
                     /locus_tag="O3Y_00035"
                     /note="Walker B; other site"
                     /db_xref="CDD:213229"
     misc_feature    complement(5096..5107)
                     /locus_tag="O3Y_00035"
                     /note="D-loop; other site"
                     /db_xref="CDD:213229"
     misc_feature    complement(5012..5032)
                     /locus_tag="O3Y_00035"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213229"
     gene            complement(5605..6276)
                     /locus_tag="O3Y_00040"
                     /db_xref="GeneID:11915681"
     CDS             complement(5605..6276)
                     /locus_tag="O3Y_00040"
                     /note="COG0765 ABC-type amino acid transport system,
                     permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="YP_005331885.1"
                     /db_xref="GI:379739916"
                     /db_xref="GeneID:11915681"
                     /translation="MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIR
                     VFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVIGLTLHF
                     AAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMI
                     KSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLN
                     KAYAR"
     misc_feature    complement(5614..6276)
                     /locus_tag="O3Y_00040"
                     /note="ABC-type amino acid transport system, permease
                     component [Amino acid transport and metabolism]; Region:
                     HisM; COG0765"
                     /db_xref="CDD:223836"
     misc_feature    complement(5656..6222)
                     /locus_tag="O3Y_00040"
                     /note="Transmembrane subunit (TM) found in Periplasmic
                     Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters which generally bind type 2 PBPs. These types
                     of transporters consist of a PBP, two TMs, and two
                     cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
                     cd06261"
                     /db_xref="CDD:119394"
     misc_feature    complement(order(5656..5658,5665..5670,5677..5682,
                     5686..5691,5698..5703,5731..5736,5773..5778,5785..5796,
                     5815..5817,5824..5829,5869..5871,5920..5922,5929..5934,
                     5944..5946,5950..5955,5962..5964,5968..5970,5974..5979,
                     6052..6054,6058..6063,6070..6099,6103..6114,6142..6144,
                     6157..6162,6169..6174))
                     /locus_tag="O3Y_00040"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119394"
     misc_feature    complement(order(5779..5796,6052..6096))
                     /locus_tag="O3Y_00040"
                     /note="conserved gate region; other site"
                     /db_xref="CDD:119394"
     misc_feature    complement(order(5701..5703,5731..5733,5740..5742,
                     5776..5778,5992..5994,6052..6054))
                     /locus_tag="O3Y_00040"
                     /note="putative PBP binding loops; other site"
                     /db_xref="CDD:119394"
     misc_feature    complement(order(5848..5850,5860..5865,5881..5919))
                     /locus_tag="O3Y_00040"
                     /note="ABC-ATPase subunit interface; other site"
                     /db_xref="CDD:119394"
     gene            complement(6354..7100)
                     /locus_tag="O3Y_00045"
                     /db_xref="GeneID:11915683"
     CDS             complement(6354..7100)
                     /locus_tag="O3Y_00045"
                     /note="COG0834 ABC-type amino acid transport/signal
                     transduction systems, periplasmic component/domain"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="YP_005331886.1"
                     /db_xref="GI:379739917"
                     /db_xref="GeneID:11915683"
                     /translation="MKHWFNIALAALALSSATVQAATEVKVGMSGRYFPFTFVKQDEL
                     QGFEVDVWNEIGKRNDYKVEFVTANFSGLLGLLETGRIDTISNQITITDARKAKYLFS
                     DPYVIDGAQITVRKGNEAIKGIDDLAGKTVAVNLGSNFEQLLRNHDKDGKINIKTYDT
                     GIEHDVALGRADAFVMDRLSALELIEKTGLPLQLAGSPFETIENAWPFVNNEKGQQLQ
                     GEVNKALAAMRADGTLSQIALKWFGTDISQ"
     misc_feature    complement(6360..7034)
                     /locus_tag="O3Y_00045"
                     /note="Substrate binding domain of an ABC transporter
                     YxeMNO; the type 2 periplasmic binding protein fold;
                     Region: PBP2_YxeM; cd13709"
                     /db_xref="CDD:270427"
     misc_feature    complement(6375..7028)
                     /locus_tag="O3Y_00045"
                     /note="Bacterial extracellular solute-binding proteins,
                     family 3; Region: SBP_bac_3; pfam00497"
                     /db_xref="CDD:249906"
     misc_feature    complement(order(6573..6575,6681..6686,6696..6698,
                     6816..6818,6837..6842,6891..6893,7002..7004,7011..7013))
                     /locus_tag="O3Y_00045"
                     /note="putative chemical substrate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270427"
     gene            7412..8815
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /db_xref="GeneID:11912945"
     CDS             7412..8815
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="COG0593 ATPase involved in DNA replication
                     initiation"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiation protein"
                     /protein_id="YP_005331887.1"
                     /db_xref="GI:379739918"
                     /db_xref="GeneID:11912945"
                     /translation="MSSSLWLQCLQRLQEELPAAEFSMWVRPLQAELNDNTLTLFAPN
                     RFVLDWVRDKYLNNINRLLMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESS
                     APAQLAQRKPIHKTWDDDSAAADITHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDN
                     PGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNA
                     IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIS
                     GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLPDEVAFFIAKRLRSNVR
                     ELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVA
                     DLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE
                     SHDIKEDYSNLIRTLSS"
     misc_feature    7412..8812
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="chromosomal replication initiation protein;
                     Reviewed; Region: dnaA; PRK00149"
                     /db_xref="CDD:234667"
     misc_feature    7418..7606
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
                     /db_xref="CDD:256535"
     misc_feature    7850..8281
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    7925..7948
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(7928..7951,8114..8116,8216..8218)
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    <8066..8500
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cl18944"
                     /db_xref="CDD:267297"
     misc_feature    8102..8119
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    8252..8254
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    8537..8806
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="C-terminal domain of bacterial DnaA proteins. The
                     DNA-binding C-terminal domain of DnaA contains a
                     helix-turn-helix motif that specifically interacts with
                     the DnaA box, a 9-mer motif that occurs repetitively in
                     the replication origin oriC. Multiple...; Region:
                     Bac_DnaA_C; cd06571"
                     /db_xref="CDD:119330"
     misc_feature    order(8606..8608,8630..8635,8654..8656,8672..8680,
                     8705..8719,8726..8728,8735..8740)
                     /gene="dnaA"
                     /locus_tag="O3Y_00050"
                     /note="DnaA box-binding interface [nucleotide binding];
                     other site"
                     /db_xref="CDD:119330"
     gene            8873..9973
                     /locus_tag="O3Y_00055"
                     /db_xref="GeneID:11912946"
     CDS             8873..9973
                     /locus_tag="O3Y_00055"
                     /EC_number="2.7.7.7"
                     /note="COG0592 DNA polymerase sliding clamp subunit (PCNA
                     homolog)"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="YP_005331888.1"
                     /db_xref="GI:379739919"
                     /db_xref="GeneID:11912946"
                     /translation="MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSM
                     TATDLEVELISRVTLEGEFEAGSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSG
                     RSRFSLATLPASDFPNIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLF
                     EIDGTTLRSVATDGHRMAVAQAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQI
                     GHSNLRAEVNHFVFTSKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNE
                     KFRGVRVNLADNGMRITANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCD
                     NVRVSMSDANASALVENVDDDSAMYVVMPIRL"
     misc_feature    8873..9970
                     /locus_tag="O3Y_00055"
                     /note="DNA polymerase III subunit beta; Validated; Region:
                     PRK05643"
                     /db_xref="CDD:235541"
     misc_feature    8873..9967
                     /locus_tag="O3Y_00055"
                     /note="Beta clamp domain.  The beta subunit (processivity
                     factor) of DNA polymerase III holoenzyme, refered to as
                     the beta clamp, forms a ring shaped dimer that encircles
                     dsDNA (sliding clamp) in bacteria.  The beta-clamp is
                     structurally similar to the trimeric...; Region:
                     beta_clamp; cd00140"
                     /db_xref="CDD:238082"
     misc_feature    order(8942..8944,9089..9091,9110..9112,9464..9466)
                     /locus_tag="O3Y_00055"
                     /note="putative DNA binding surface [nucleotide binding];
                     other site"
                     /db_xref="CDD:238082"
     misc_feature    order(9092..9094,9101..9103,9179..9181,9185..9187,
                     9686..9688,9779..9784)
                     /locus_tag="O3Y_00055"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238082"
     misc_feature    order(9386..9388,9392..9403,9830..9832,9956..9967)
                     /locus_tag="O3Y_00055"
                     /note="beta-clamp/clamp loader binding surface; other
                     site"
                     /db_xref="CDD:238082"
     misc_feature    order(9386..9388,9392..9397,9611..9613,9716..9718,
                     9755..9760,9839..9841,9956..9967)
                     /locus_tag="O3Y_00055"
                     /note="beta-clamp/translesion DNA polymerase binding
                     surface; other site"
                     /db_xref="CDD:238082"
     gene            9991..11082
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /db_xref="GeneID:11912947"
     CDS             9991..11082
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="COG1195 Recombinational DNA repair ATPase (RecF
                     pathway)"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein F"
                     /protein_id="YP_005331889.1"
                     /db_xref="GI:379739920"
                     /db_xref="GeneID:11912947"
                     /translation="MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIY
                     LLGHGRSFKSSLTGRIIQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKI
                     GGQTGQKLAQLAQILPLQLIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFK
                     RLSKQRNALLKSAQSYRELSYWDQELARLAEQIDQWRESYVNQLKNVAEQLCRTFLPE
                     FDIDLKYYRGWEKDQPYQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVLSR
                     GQLKLMVCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFV
                     SSITESQVADMLDESSKTFHVAHGVIEQG"
     misc_feature    9991..11076
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="Recombinational DNA repair ATPase (RecF pathway)
                     [DNA replication, recombination, and repair]; Region:
                     RecF; COG1195"
                     /db_xref="CDD:224116"
     misc_feature    9997..11073
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl21455"
                     /db_xref="CDD:271875"
     misc_feature    10078..10101
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(10087..10092,10096..10104,10360..10362,10909..10914,
                     11002..11004)
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    10351..10362
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    10810..10839
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    10897..10914
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    10921..10932
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    10990..11010
                     /gene="recF"
                     /locus_tag="O3Y_00060"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            11103..13520
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /db_xref="GeneID:11912948"
     CDS             11103..13520
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="COG0187 Type IIA topoisomerase (DNA gyrase/topo II,
                     topoisomerase IV), B subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit B"
                     /protein_id="YP_005331890.1"
                     /db_xref="GI:379739921"
                     /db_xref="GeneID:11912948"
                     /translation="MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
                     DNSIDEALAGYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGG
                     KFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET
                     ERTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMY
                     EGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQ
                     RDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFS
                     SQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREM
                     TRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK
                     ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIR
                     TLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAE
                     LHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADK
                     AAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKIQVRTHGVTHEYLLSADL
                     INSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRY
                     KGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNAL
                     KVANLDV"
     misc_feature    11103..13517
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="DNA gyrase subunit B; Provisional; Region: gyrB;
                     PRK14939"
                     /db_xref="CDD:237860"
     misc_feature    11208..11615
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    order(11226..11228,11238..11240,11247..11249,11313..11315,
                     11319..11321,11325..11327,11331..11336,11451..11462,
                     11571..11573,11577..11579,11592..11597,11601..11603)
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    11238..11240
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    order(11325..11327,11331..11333,11451..11453,11457..11459)
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     misc_feature    11760..12236
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
                     a ribosomal S5 domain 2-like fold, of the type found in
                     proteins of the type IIA family of DNA topoisomerases
                     similar to the B subunits of E. coli DNA gyrase and E.
                     coli Topoisomerase IV which are; Region:
                     TopoII_Trans_DNA_gyrase; cd00822"
                     /db_xref="CDD:238419"
     misc_feature    11916..11918
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="anchoring element; other site"
                     /db_xref="CDD:238419"
     misc_feature    order(12090..12092,12099..12104,12108..12110)
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238419"
     misc_feature    order(12108..12110,12114..12116)
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238419"
     misc_feature    12357..12701
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
                     nucleotidyl transferase/hydrolase domain of the type found
                     in proteins of the type IIA family of DNA topoisomerases
                     similar to the Escherichia coli GyrB subunit. TopoIIA
                     enzymes cut both strands of the...; Region:
                     TOPRIM_TopoIIA_GyrB; cd03366"
                     /db_xref="CDD:173786"
     misc_feature    order(12375..12380,12387..12389,12597..12599,12603..12605,
                     12609..12611)
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="active site"
                     /db_xref="CDD:173786"
     misc_feature    order(12375..12377,12597..12599)
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="putative metal-binding site [ion binding]; other
                     site"
                     /db_xref="CDD:173786"
     misc_feature    13290..13484
                     /gene="gyrB"
                     /locus_tag="O3Y_00065"
                     /note="DNA gyrase B subunit, carboxyl terminus; Region:
                     DNA_gyraseB_C; pfam00986"
                     /db_xref="CDD:250273"
     gene            13945..14367
                     /locus_tag="O3Y_00070"
                     /db_xref="GeneID:11912949"
     CDS             13945..14367
                     /locus_tag="O3Y_00070"
                     /note="COG0782 Transcription elongation factor"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331891.1"
                     /db_xref="GI:379739922"
                     /db_xref="GeneID:11912949"
                     /translation="MLNRLSLNIRRFLAGWWLRSRFLTYQSPLLLLELFEKLEHPRSP
                     IERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGRRQH
                     EVFTLSIWGQPHCFAITHVQHSMQGKPTKLCHACYVSN"
     misc_feature    14143..>14274
                     /locus_tag="O3Y_00070"
                     /note="Transglutaminase family, C-terminal ig like domain;
                     Region: Transglut_C; pfam00927"
                     /db_xref="CDD:250232"
     gene            14377..14493
                     /locus_tag="O3Y_00075"
                     /db_xref="GeneID:11912950"
     CDS             14377..14493
                     /locus_tag="O3Y_00075"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331892.1"
                     /db_xref="GI:379739923"
                     /db_xref="GeneID:11912950"
                     /translation="MSKQEMKKPQLSLKEKRKLKQEKAQESSVIKPRKSKGR"
     gene            14769..15206
                     /locus_tag="O3Y_00080"
                     /db_xref="GeneID:11912951"
     CDS             14769..15206
                     /locus_tag="O3Y_00080"
                     /note="COG0071 Molecular chaperone (small heat shock
                     protein)"
                     /codon_start=1
                     /transl_table=11
                     /product="16 kDa heat shock protein A"
                     /protein_id="YP_005331893.1"
                     /db_xref="GI:379739924"
                     /db_xref="GeneID:11912951"
                     /translation="MRTVDFTPLYRNAIGFDRLLNMMENSAAKNAQGGYPPYNIEQKE
                     DNQYRITMAVAGFGDEEIDITQQENTLIVRGERKPEESKNYIYQGIAERDFERKFQLA
                     DYVKVTGATMEHGLLHIDLEREIPEAMQPRKIAINGKHLLENK"
     misc_feature    14769..15179
                     /locus_tag="O3Y_00080"
                     /note="Molecular chaperone (small heat shock protein)
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: IbpA; COG0071"
                     /db_xref="CDD:223149"
     misc_feature    14874..15137
                     /locus_tag="O3Y_00080"
                     /note="Alpha-crystallin domain (ACD) found in Escherichia
                     coli inclusion body-associated proteins IbpA and IbpB, and
                     similar proteins.  IbpA and IbpB are 16 kDa small heat
                     shock proteins (sHsps). sHsps are molecular chaperones
                     that suppress protein aggregation...; Region:
                     ACD_IbpA-B_like; cd06470"
                     /db_xref="CDD:107227"
     misc_feature    order(14880..14894,14919..14921,14925..14927,14931..14936,
                     15057..15059,15111..15116)
                     /locus_tag="O3Y_00080"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:107227"
     gene            complement(15294..16550)
                     /gene="avtA"
                     /locus_tag="O3Y_00085"
                     /db_xref="GeneID:11912952"
     CDS             complement(15294..16550)
                     /gene="avtA"
                     /locus_tag="O3Y_00085"
                     /EC_number="2.6.1.66"
                     /note="COG3977 Alanine-alpha-ketoisovalerate (or
                     valine-pyruvate) aminotransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="YP_005331894.1"
                     /db_xref="GI:379739925"
                     /db_xref="GeneID:11912952"
                     /translation="MQYSSFGEKFNRYSGITQLMDDLNDGLRTPGAIMLGGGNPAAIP
                     AMLDYFHNTSAEMLADGSLLNAMTNYDGPQGKDVFVKSLATLLRETYGWNISEKNITL
                     TNGSQSGFFYLFNLFAGKQPDGAHKKILLPLAPEYIGYGDAGIDDDIFVSYRPEIELL
                     DQGLFKYHVDFSELKVDESVAAICVSRPTNPTGNVLTEEEIHKLDQLARDNGVPLIID
                     NAYGVPFPNIIFEDIEPFWNDNTILCMSLSKLGLPGLRCGIVIANEAVTQALTNMNGI
                     ISLAPGSMGPALVQRMIEKGDLLRLSEQVIKPFYRQKAQHAVELLQSAITDPRFRIHK
                     PEGAIFLWLWFDELPITTMELYQRLKARGVLIVPGEYFFIGQPQEWPHAHECLRMNYV
                     QNEQAMEQGIAIIAEEVQKAYQQANV"
     misc_feature    complement(15303..16550)
                     /gene="avtA"
                     /locus_tag="O3Y_00085"
                     /note="valine--pyruvate transaminase; Provisional; Region:
                     avtA; PRK09440"
                     /db_xref="CDD:236517"
     misc_feature    complement(15330..16388)
                     /gene="avtA"
                     /locus_tag="O3Y_00085"
                     /note="Aspartate aminotransferase family. This family
                     belongs to pyridoxal phosphate (PLP)-dependent aspartate
                     aminotransferase superfamily (fold I). Pyridoxal phosphate
                     combines with an alpha-amino acid to form a compound
                     called a Schiff base or aldimine...; Region: AAT_like;
                     cd00609"
                     /db_xref="CDD:99734"
     misc_feature    complement(order(15783..15785,15804..15809,15813..15815,
                     15888..15890,15981..15983,16140..16142,16230..16238))
                     /gene="avtA"
                     /locus_tag="O3Y_00085"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99734"
     misc_feature    complement(order(15675..15677,15684..15686,15783..15791,
                     15909..15911,16092..16094,16227..16229))
                     /gene="avtA"
                     /locus_tag="O3Y_00085"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99734"
     misc_feature    complement(15804..15806)
                     /gene="avtA"
                     /locus_tag="O3Y_00085"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99734"
     gene            complement(16869..18935)
                     /gene="glyS"
                     /locus_tag="O3Y_00090"
                     /db_xref="GeneID:11912953"
     CDS             complement(16869..18935)
                     /gene="glyS"
                     /locus_tag="O3Y_00090"
                     /EC_number="6.1.1.14"
                     /note="COG0751 Glycyl-tRNA synthetase, beta subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-tRNA synthetase subunit beta"
                     /protein_id="YP_005331895.1"
                     /db_xref="GI:379739926"
                     /db_xref="GeneID:11912953"
                     /translation="MAKEFLIELGTEELPPKQLRTLAEAFAANFAAELATADIAHEGV
                     TWFATPRRLALKVANLAESQPDRVVEKRGPAVNVAFDADGKPTKAAEGWARGNGITVE
                     QAERLVTDKGEWLLFKEQVQGQQTASVVVEMAAKALANLPIAKPMRWGDKETQFIRPV
                     KTLTILFGSELIQGEILGVASARTLRGHRFMGEAEFTIESAEQYPAILEERGKVIADY
                     ATRKAMIIEGSQQAAQQLGGIADLEDALVEEVTSLVEWPVVMTAKFEEKFLKVPAEAL
                     VYTMKGDQKYFPVYDASKKLLPNFIFVSNIESKEPRHIVEGNEKVVRPRLADAEFFFN
                     TDRKRPLVDRLPLLENAIFQQQLGTIKDKTDRITELAGYIAEQIGADVEKSKRAGLLA
                     KCDLMTSMVFEFTDTQGVMGMHYARHDGEAEEVAVALNEQYMPRFAGDELPSRGVSAA
                     VAMADKLDTIVGIFGIGQAPKGSDPFALRRASLGVLRILVEYGYQLDLVDLIAKAKSL
                     FGDRLTNANVEQEVIEFMLGRFPTWYQDAGFSIDIIQAVLARNPTKPADFDQRVKAVS
                     HFRALEEAEALAAANKRVGNILAKYDGELGEEIDLALLQEDAEKALAEAVEIMAEALE
                     PAFATGNYQEALSKLAGLRAPVDAFFDNVMVMADDEALKKNRLTLLNKLRNLFLQIAD
                     ISLLQK"
     misc_feature    complement(16872..18932)
                     /gene="glyS"
                     /locus_tag="O3Y_00090"
                     /note="glycyl-tRNA synthetase subunit beta; Validated;
                     Region: glyS; PRK01233"
                     /db_xref="CDD:234925"
     misc_feature    complement(17283..18923)
                     /gene="glyS"
                     /locus_tag="O3Y_00090"
                     /note="Glycyl-tRNA synthetase beta subunit; Region:
                     tRNA_synt_2f; pfam02092"
                     /db_xref="CDD:251082"
     misc_feature    complement(16905..17189)
                     /gene="glyS"
                     /locus_tag="O3Y_00090"
                     /note="DALR anticodon binding domain; Region: DALR_1;
                     smart00836"
                     /db_xref="CDD:214846"
     misc_feature    complement(order(16986..16988,16995..16997,17013..17015,
                     17043..17045,17175..17180,17184..17189))
                     /gene="glyS"
                     /locus_tag="O3Y_00090"
                     /note="tRNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:153408"
     misc_feature    complement(order(16986..16988,17175..17180,17187..17189))
                     /gene="glyS"
                     /locus_tag="O3Y_00090"
                     /note="anticodon binding site; other site"
                     /db_xref="CDD:153408"
     STS             17438..18199
                     /standard_name="ha2331"
                     /db_xref="UniSTS:515525"
     gene            complement(18950..19867)
                     /gene="glyQ"
                     /locus_tag="O3Y_00095"
                     /db_xref="GeneID:11912954"
     CDS             complement(18950..19867)
                     /gene="glyQ"
                     /locus_tag="O3Y_00095"
                     /EC_number="6.1.1.14"
                     /note="COG0752 Glycyl-tRNA synthetase, alpha subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-tRNA synthetase subunit alpha"
                     /protein_id="YP_005331896.1"
                     /db_xref="GI:379739927"
                     /db_xref="GeneID:11912954"
                     /translation="MQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMT
                     CLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSL
                     RVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
                     GEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDF
                     LFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRI
                     RNLTKSVAEAYYASREALGFPMCKKSEQK"
     misc_feature    complement(18992..19846)
                     /gene="glyQ"
                     /locus_tag="O3Y_00095"
                     /note="Class II Glycyl-tRNA synthetase (GlyRS) alpha
                     subunit core catalytic domain. GlyRS functions as a
                     homodimer in eukaryotes, archaea and some bacteria and as
                     a heterotetramer in the remainder of prokaryotes and in
                     arabidopsis. It is responsible for the...; Region:
                     GlyRS_alpha_core; cd00733"
                     /db_xref="CDD:238375"
     misc_feature    complement(order(19118..19120,19130..19132,19139..19150,
                     19154..19156,19166..19168,19181..19183,19190..19195,
                     19202..19207,19214..19216,19223..19225,19229..19231,
                     19250..19255,19262..19264,19313..19315,19631..19633,
                     19679..19681,19691..19693,19718..19720,19766..19777,
                     19781..19783,19787..19792,19814..19816,19826..19828,
                     19838..19840))
                     /gene="glyQ"
                     /locus_tag="O3Y_00095"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238375"
     misc_feature    complement(19772..19795)
                     /gene="glyQ"
                     /locus_tag="O3Y_00095"
                     /note="motif 1; other site"
                     /db_xref="CDD:238375"
     misc_feature    complement(order(19361..19366,19370..19375,19379..19384,
                     19430..19432,19442..19447,19610..19618,19622..19624,
                     19628..19630,19676..19678,19751..19753,19757..19759))
                     /gene="glyQ"
                     /locus_tag="O3Y_00095"
                     /note="active site"
                     /db_xref="CDD:238375"
     misc_feature    complement(19670..19681)
                     /gene="glyQ"
                     /locus_tag="O3Y_00095"
                     /note="motif 2; other site"
                     /db_xref="CDD:238375"
     misc_feature    complement(19361..19372)
                     /gene="glyQ"
                     /locus_tag="O3Y_00095"
                     /note="motif 3; other site"
                     /db_xref="CDD:238375"
     gene            20283..20837
                     /locus_tag="O3Y_00100"
                     /db_xref="GeneID:11912955"
     CDS             20283..20837
                     /locus_tag="O3Y_00100"
                     /note="COG2119 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331897.1"
                     /db_xref="GI:379739928"
                     /db_xref="GeneID:11912955"
                     /translation="MSVLAISITTVALAEIGDKTQLLSLLLASRYRKPIPIIAAIFLA
                     TLANHALAAWLGVVVADYLSPDILKWVLVVSFLAMAGWILIPDKLDGEESISTRGPFV
                     ASFIAFFMAEIGDKTQIATSILGAQYADALSWVIVGTTLGMLLANVPVVLIGKLSADK
                     MPLGLIRKVTAGLFLLMALATAFF"
     misc_feature    20283..20834
                     /locus_tag="O3Y_00100"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG2119"
                     /db_xref="CDD:225030"
     misc_feature    20292..20522
                     /locus_tag="O3Y_00100"
                     /note="Uncharacterized protein family UPF0016; Region:
                     UPF0016; pfam01169"
                     /db_xref="CDD:250414"
     misc_feature    20583..20816
                     /locus_tag="O3Y_00100"
                     /note="Uncharacterized protein family UPF0016; Region:
                     UPF0016; pfam01169"
                     /db_xref="CDD:250414"
     gene            20943..21200
                     /locus_tag="O3Y_00105"
                     /db_xref="GeneID:11912956"
     CDS             20943..21200
                     /locus_tag="O3Y_00105"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase subunit II-like protein"
                     /protein_id="YP_005331898.1"
                     /db_xref="GI:379739929"
                     /db_xref="GeneID:11912956"
                     /translation="MLTRYMGMTPKSQSYLFSFGLVLTLLGMALTDLWMPMVVGAIVM
                     TALAVESWIRVAHIIPLHDEVRTLQKQLNRLQAELRNLEEE"
     misc_feature    20997..>21197
                     /locus_tag="O3Y_00105"
                     /note="Bacterial protein of unknown function (DUF881);
                     Region: DUF881; cl19849"
                     /db_xref="CDD:268202"
     misc_feature    <21102..21197
                     /locus_tag="O3Y_00105"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cl21462"
                     /db_xref="CDD:271882"
     misc_feature    21102..21197
                     /locus_tag="O3Y_00105"
                     /note="coiled coil; other site"
                     /db_xref="CDD:269834"
     misc_feature    order(21102..21104,21111..21116,21123..21128,21132..21137,
                     21144..21149,21153..21158,21165..21170,21174..21179,
                     21186..21191,21195..21197)
                     /locus_tag="O3Y_00105"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269834"
     gene            complement(21287..21535)
                     /locus_tag="O3Y_00110"
                     /db_xref="GeneID:11912957"
     CDS             complement(21287..21535)
                     /locus_tag="O3Y_00110"
                     /note="COG0425 Predicted redox protein, regulator of
                     disulfide bond formation"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur transfer protein SirA"
                     /protein_id="YP_005331899.1"
                     /db_xref="GI:379739930"
                     /db_xref="GeneID:11912957"
                     /translation="MTFNPNIATHTLEAEGLRCPEPVMMVRKTIRTMLDGEVLLVTAD
                     DPSTTRDIPSFCRFMDHQLLGAQIDQLPYQYLIKKGLA"
     misc_feature    complement(21293..21535)
                     /locus_tag="O3Y_00110"
                     /note="sulfur transfer protein SirA; Reviewed; Region:
                     PRK00299"
                     /db_xref="CDD:178967"
     misc_feature    complement(order(21464..21466,21470..21481,21488..21490,
                     21497..21502))
                     /locus_tag="O3Y_00110"
                     /note="CPxP  motif; other site"
                     /db_xref="CDD:238180"
     gene            21668..21856
                     /locus_tag="O3Y_00115"
                     /db_xref="GeneID:11912958"
     CDS             21668..21856
                     /locus_tag="O3Y_00115"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331900.1"
                     /db_xref="GI:379739931"
                     /db_xref="GeneID:11912958"
                     /translation="MMLTTLDRLTIYAVLCFISLCALGLGETTQAQLMPVLGTAASIF
                     GIWLEMRSEQDTTQQPHR"
     gene            complement(22028..23008)
                     /locus_tag="O3Y_00120"
                     /db_xref="GeneID:11912959"
     CDS             complement(22028..23008)
                     /locus_tag="O3Y_00120"
                     /note="COG0604 NADPH:quinone reductase and related
                     Zn-dependent oxidoreductases"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase"
                     /protein_id="YP_005331901.1"
                     /db_xref="GI:379739932"
                     /db_xref="GeneID:11912959"
                     /translation="MFNALLLTQQDKITHATVTQINDDQLPAGNVTVAVNYSSLNYKD
                     GLAITGKGKIIREFPMVPGIDFAGTVLESADARYQVGDAVVLTGWGVGENHWGGMAQK
                     ARLNADWLVKLPQGLTSQQAMMIGTAGFTAMLCVQALIDGGIKPEDGEILVTGASGGV
                     GSVAVTLLAQLGYKVVAVTGRVAQNGPLLEQLGASRVIDRQEFSEASRPLEKQLWVGA
                     VDTVGSKVLAKVLAQMHYNGVVAACGLAGGFDLPTTVMPFILRNVRLQGVDSVSCPVE
                     KRLAAWKKLAELLPASYYAQACHEISLSQVPEYAEAITNGQVTGRVVVKL"
     misc_feature    complement(22037..23005)
                     /locus_tag="O3Y_00120"
                     /note="Yhdh putative quinone oxidoreductases; Region:
                     MDR_yhdh; cd08288"
                     /db_xref="CDD:176248"
     misc_feature    complement(22031..23002)
                     /locus_tag="O3Y_00120"
                     /note="putative quinone oxidoreductase, YhdH/YhfP family;
                     Region: oxido_YhdH; TIGR02823"
                     /db_xref="CDD:234026"
     misc_feature    complement(order(22055..22057,22061..22063,22070..22072,
                     22196..22207,22268..22282,22343..22348,22409..22411,
                     22466..22474,22529..22540,22544..22546,22616..22618,
                     22625..22630,22883..22888))
                     /locus_tag="O3Y_00120"
                     /note="NADP binding site [chemical binding]; other site"
                     /db_xref="CDD:176248"
     misc_feature    complement(order(22190..22195,22202..22225,22229..22237,
                     22241..22252,22256..22258,22274..22285,22301..22303,
                     22382..22384))
                     /locus_tag="O3Y_00120"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:176248"
     gene            complement(23256..24788)
                     /locus_tag="O3Y_00125"
                     /db_xref="GeneID:11912960"
     CDS             complement(23256..24788)
                     /locus_tag="O3Y_00125"
                     /EC_number="4.3.1.19"
                     /note="COG1171 Threonine dehydratase"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine dehydratase"
                     /protein_id="YP_005331902.1"
                     /db_xref="GI:379739933"
                     /db_xref="GeneID:11912960"
                     /translation="MGLTNQTGAEYLRQILRSPVYEVANVTPLQTMPRLSARIGNQVQ
                     IKREDRQPVHSFKLRGAYNMVSHLTEAQKAAGVIAASAGNHAQGMALSGTKLGIKTTI
                     VMPRTTPDIKVEAVRGFGGEVLLHGSNFDEAKAEAERLSKEQGYTFVPPFDHPLVIAG
                     QGTIGMEMLQQNGHLDYIFVPVGGGGLAAGVAVLVKQLMPEIQVIAVEPEDSACLKAA
                     LDAGKPVVLDQVSMFADGVAVKRIGDETFRLCQQYIDGHVTVSSDEICAAVKDIFEDT
                     RAIAEPSGALALAGLKKFAEQQQLKGKQLGTVLSGANTNFHGLRYVSERCELGEKREG
                     LLAVTIPERKGAFFDFCQIIGNRAVTEFNYRYNDDQLANIFVGVRLVGGPDELKSIIH
                     ELRQSGYPVQDLSDDEMAKLHIRYMIGGRPSKPLTERLYSFEFPEYPGALLKFLSMLG
                     THWNISLFNYRNHGADYGRVLCGFELDTPDLVRFSEHLVELGYRYKDETDNPAYRFFL
                     AK"
     misc_feature    complement(23262..24770)
                     /locus_tag="O3Y_00125"
                     /note="threonine dehydratase; Reviewed; Region: PRK09224"
                     /db_xref="CDD:236417"
     misc_feature    complement(23844..24755)
                     /locus_tag="O3Y_00125"
                     /note="Threonine dehydratase: The first step in amino acid
                     degradation is the removal of nitrogen. Although the
                     nitrogen atoms of most amino acids are transferred to
                     alpha-ketoglutarate before removal, the alpha-amino group
                     of threonine can be directly...; Region: Thr-dehyd;
                     cd01562"
                     /db_xref="CDD:107205"
     misc_feature    complement(order(23844..23855,23952..23960,23970..23972,
                     23979..23984,23991..23993,24198..24203,24639..24644,
                     24729..24734,24741..24743,24750..24755))
                     /locus_tag="O3Y_00125"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:107205"
     misc_feature    complement(order(23859..23861,24228..24242,24537..24539,
                     24618..24620))
                     /locus_tag="O3Y_00125"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:107205"
     misc_feature    complement(24618..24620)
                     /locus_tag="O3Y_00125"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:107205"
     misc_feature    complement(23538..23792)
                     /locus_tag="O3Y_00125"
                     /note="First of two tandem C-terminal ACT domains of
                     threonine dehydratase I (ThrD-I; L-threonine hydrolyase);
                     Region: ACT_ThrD-I_1; cd04906"
                     /db_xref="CDD:153178"
     misc_feature    complement(23739..23756)
                     /locus_tag="O3Y_00125"
                     /note="putative Ile/Val binding site [chemical binding];
                     other site"
                     /db_xref="CDD:153178"
     misc_feature    complement(23265..23507)
                     /locus_tag="O3Y_00125"
                     /note="Second of two tandem C-terminal ACT domains of
                     threonine dehydratase I (ThrD-I; L-threonine hydrolyase);
                     Region: ACT_ThrD-I_2; cd04907"
                     /db_xref="CDD:153179"
     misc_feature    complement(23454..23471)
                     /locus_tag="O3Y_00125"
                     /note="putative Ile/Val binding site [chemical binding];
                     other site"
                     /db_xref="CDD:153179"
     gene            complement(24792..26633)
                     /locus_tag="O3Y_00130"
                     /db_xref="GeneID:11912961"
     CDS             complement(24792..26633)
                     /locus_tag="O3Y_00130"
                     /EC_number="4.2.1.9"
                     /note="COG0129 Dihydroxyacid dehydratase/phosphogluconate
                     dehydratase"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="YP_005331903.1"
                     /db_xref="GI:379739934"
                     /db_xref="GeneID:11912961"
                     /translation="MPKYRSATTTHGRNMAGARALWRATGVKEEDFGKPIIAVVNSFT
                     QFVPGHVHLKDLGQLVAREIEAAGGIAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPAIFVSGGPMEAGKTKLSDQII
                     KLDLVDAMMQGADPKVSDAQSEQIERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
                     GSLLATHADRKQLFLTAGQRIVELTKRYYEQDDASVLPRNIANKAAFENAIALDIAMG
                     GSTNTVLHLLAAAQEGEVEFDMTDIDRMSRQVPHLCKVAPSTQKYHMEDVHRAGGVMG
                     ILGELQRAGLLKDQTRTVLGISLQEQLAQYDVKQTQDPAVHTMFRAGPAGIRTTQAFS
                     QDCRWDTLDDDRQEGCIRDKAHAFSQDGGLAVLKGNLAIDGCIVKTAGVDESILKFRG
                     PAVVYESQEDAVNGILGGQVKAGDVVVIRYEGPKGGPGMQEMLYPTTYLKSMGLGKQC
                     ALLTDGRFSGGTSGLSIGHASPEAANGGTIGLVRSGDSIAIDIPNRSITLEVSESELA
                     ARRAEQDKLGWKPVDRQRTVSLALKAYASMATSADKGAVRDKSKLEG"
     misc_feature    complement(24795..26630)
                     /locus_tag="O3Y_00130"
                     /note="dihydroxy-acid dehydratase; Provisional; Region:
                     PRK12448"
                     /db_xref="CDD:237104"
     gene            complement(26643..27581)
                     /locus_tag="O3Y_00135"
                     /db_xref="GeneID:11912962"
     CDS             complement(26643..27581)
                     /locus_tag="O3Y_00135"
                     /EC_number="2.6.1.42"
                     /note="COG0115 Branched-chain amino acid
                     aminotransferase/4-amino-4-deoxychorismate lyase"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="YP_005331904.1"
                     /db_xref="GI:379739935"
                     /db_xref="GeneID:11912962"
                     /translation="MATKTADYIWFNGEMIPWANATVHVLTHAMHYGTSVFEGVRCYN
                     TPKGPIIFRHREHAQRLLDSAKIYRFPIPYSIETIMEATRETLRVNKLDNAYIRPLAY
                     VGNVGLGVCPPVGTEMDLMIAAFPWGAYLGEEALENGVDAMVSSWHRAAPNTIPTAAK
                     AGGNYLSSLLVGGEARRHGYAEGIALSVDGYLSEGAGENIFVVKNGVILTPPTTSSIL
                     PGITRDSIMTLARDMGYEVREANISREALYLADEIFMTGTAAEVVPVRSVDKITVGAG
                     KRGPITKVVQDAYFGLFKGTTEDKWGWLDYVYPAAK"
     misc_feature    complement(26697..27518)
                     /locus_tag="O3Y_00135"
                     /note="BCAT_beta_family: Branched-chain aminotransferase
                     catalyses the transamination of the branched-chain amino
                     acids  leusine, isoleucine and valine to their respective
                     alpha-keto acids, alpha-ketoisocaproate,
                     alpha-keto-beta-methylvalerate and...; Region:
                     BCAT_beta_family; cd01557"
                     /db_xref="CDD:238798"
     misc_feature    complement(order(27063..27065,27075..27077,27081..27083,
                     27096..27098,27219..27221,27246..27248,27258..27266,
                     27282..27284,27288..27290,27381..27383,27471..27473,
                     27477..27479,27483..27497,27504..27518))
                     /locus_tag="O3Y_00135"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238798"
     misc_feature    complement(order(26808..26810,26916..26921,27000..27002,
                     27087..27089,27102..27104,27252..27254,27402..27404,
                     27471..27473,27486..27488))
                     /locus_tag="O3Y_00135"
                     /note="substrate-cofactor binding pocket; other site"
                     /db_xref="CDD:238798"
     misc_feature    complement(27102..27104)
                     /locus_tag="O3Y_00135"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:238798"
     gene            complement(27593..27877)
                     /gene="ilvM"
                     /locus_tag="O3Y_00140"
                     /db_xref="GeneID:11912963"
     CDS             complement(27593..27877)
                     /gene="ilvM"
                     /locus_tag="O3Y_00140"
                     /EC_number="2.2.1.6"
                     /note="COG3978 Acetolactate synthase (isozyme II), small
                     (regulatory) subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 regulatory subunit"
                     /protein_id="YP_005331905.1"
                     /db_xref="GI:379739936"
                     /db_xref="GeneID:11912963"
                     /translation="MQRYLLDIKADDKPVLLERVLRVTHHRGFVIKQVAATQNHASKI
                     ASVEIIVDSDRPITTLTNQIEKLWDVRTVEVTAIRNDELPNNNLQQKICA"
     misc_feature    complement(27596..27877)
                     /gene="ilvM"
                     /locus_tag="O3Y_00140"
                     /note="Acetolactate synthase (isozyme II), small
                     (regulatory) subunit [Function unknown]; Region: COG3978"
                     /db_xref="CDD:226486"
     gene            complement(27889..29535)
                     /locus_tag="O3Y_00145"
                     /db_xref="GeneID:11912964"
     CDS             complement(27889..29535)
                     /locus_tag="O3Y_00145"
                     /EC_number="2.2.1.6"
                     /note="COG0028 Thiamine pyrophosphate-requiring enzymes
                     [acetolactate synthase, pyruvate dehydrogenase
                     (cytochrome), glyoxylate carboligase, phosphonopyruvate
                     decarboxylase]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="YP_005331906.1"
                     /db_xref="GI:379739937"
                     /db_xref="GeneID:11912964"
                     /translation="MTGAQLVVAALKQQGIKTVFGYPGGAIMPIYDALYDGGVEHILC
                     RHEQGAAMAAIGMARSTQKVAVCMATSGPGATNLVTGLADAFLDSVPLVAITGQVASS
                     HIGTDAFQEMDVIGMSLSCTKHSYLVTDINELAPTLAEAFEVAQTGRPGPVLVDIAKD
                     VQLGKAPVSALPSFTPPAMPHVDATHLANAQALLAQSKRPVLYVGGGVQLANATDTVR
                     EFLRLNPMPSVSTLKGLGTIERHDPHYLGMLGMHGTKAANLIVQECDLLIAVGARFDD
                     RVTGKLDTFAPHAKVIHVDIDAAEFNKLRHAHAALRGDINLILPQLELSHDISPWVHH
                     SESLRSGFKWRYDHPGDNIFAPLLLKQLSDMMPDSSIVSTDVGQHQMWAAQHIQPRAP
                     QNFISSAGLGTMGFGLPAAMGAAVARPDDQSILISGDGSFMMNVQELGTLKRRQIPVK
                     MVLLDNQRLGMVRQWQSLFFDGRHSETILDDNPDFVMLAKAFNIPGKTISRKEEVEPA
                     LREMLASKTAYLLHVLIDEEENVWPLVPPGASNTDMLENT"
     misc_feature    complement(27892..29535)
                     /locus_tag="O3Y_00145"
                     /note="acetolactate synthase 2 catalytic subunit;
                     Reviewed; Region: PRK08978"
                     /db_xref="CDD:181601"
     misc_feature    complement(29059..29523)
                     /locus_tag="O3Y_00145"
                     /note="Pyrimidine (PYR) binding domain of POX and related
                     proteins; Region: TPP_PYR_POX_like; cd07035"
                     /db_xref="CDD:132918"
     misc_feature    complement(order(29272..29277,29284..29286,29296..29298,
                     29317..29319,29353..29361,29365..29370,29377..29382,
                     29389..29391,29398..29418,29440..29442,29452..29454,
                     29464..29469,29482..29484))
                     /locus_tag="O3Y_00145"
                     /note="PYR/PP interface [polypeptide binding]; other site"
                     /db_xref="CDD:132918"
     misc_feature    complement(order(29176..29178,29185..29187,29287..29289,
                     29296..29301,29305..29310,29317..29319,29392..29394,
                     29398..29409,29413..29415,29440..29442,29452..29454,
                     29461..29469))
                     /locus_tag="O3Y_00145"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132918"
     misc_feature    complement(order(29305..29307,29317..29319,29395..29397,
                     29467..29469))
                     /locus_tag="O3Y_00145"
                     /note="TPP binding site [chemical binding]; other site"
                     /db_xref="CDD:132918"
     misc_feature    complement(28570..28977)
                     /locus_tag="O3Y_00145"
                     /note="Thiamine pyrophosphate enzyme, central domain;
                     Region: TPP_enzyme_M; pfam00205"
                     /db_xref="CDD:249676"
     misc_feature    complement(27922..28464)
                     /locus_tag="O3Y_00145"
                     /note="Thiamine pyrophosphate (TPP) family,
                     Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
                     module; composed of proteins similar to the large
                     catalytic subunit of AHAS. AHAS catalyzes the condensation
                     of two molecules of pyruvate to give the...; Region:
                     TPP_AHAS; cd02015"
                     /db_xref="CDD:238973"
     misc_feature    complement(order(28168..28170,28234..28236,28243..28251,
                     28324..28326,28330..28332,28399..28410))
                     /locus_tag="O3Y_00145"
                     /note="TPP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238973"
     misc_feature    complement(order(28063..28065,28072..28074,28084..28089,
                     28204..28206,28225..28230,28234..28239,28324..28326,
                     28330..28332,28339..28341))
                     /locus_tag="O3Y_00145"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238973"
     gene            30069..31592
                     /locus_tag="O3Y_00150"
                     /db_xref="GeneID:11912965"
     CDS             30069..31592
                     /locus_tag="O3Y_00150"
                     /note="COG0606 Predicted ATPase with chaperone activity"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase family protein"
                     /protein_id="YP_005331907.1"
                     /db_xref="GI:379739938"
                     /db_xref="GeneID:11912965"
                     /translation="MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKE
                     SRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGRFDLPIALGILAASDQIARNKLE
                     SYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
                     LEVCADLCGQQTLSLFQSSPSVQQVSQTRDLQDIIGQQQGKRALEIAAAGNHNLLFLG
                     PPGTGKTMLASRLCDLLPEMSDEEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSM
                     AALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLESGEIVISRAQGKTR
                     FPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKG
                     TLANGGDRGESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLES
                     ALHRLGLSIRAYHRIIKVARTIADLQGEAQIARPHLAEALGYRAMDRLLKQLSAQNV"
     misc_feature    30111..31562
                     /locus_tag="O3Y_00150"
                     /note="Predicted ATPase with chaperone activity
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: COG0606"
                     /db_xref="CDD:223679"
     misc_feature    30129..30494
                     /locus_tag="O3Y_00150"
                     /note="Subunit ChlI of Mg-chelatase; Region: ChlI;
                     pfam13541"
                     /db_xref="CDD:257860"
     misc_feature    30651..31229
                     /locus_tag="O3Y_00150"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    30720..30743
                     /locus_tag="O3Y_00150"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(30723..30746,30972..30974,31104..31106)
                     /locus_tag="O3Y_00150"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    30960..30977
                     /locus_tag="O3Y_00150"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    31203..31205
                     /locus_tag="O3Y_00150"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    31266..31547
                     /locus_tag="O3Y_00150"
                     /note="Magnesium chelatase, subunit ChlI; Region:
                     Mg_chelatase_2; pfam13335"
                     /db_xref="CDD:257665"
     gene            31682..32566
                     /locus_tag="O3Y_00155"
                     /db_xref="GeneID:11912966"
     CDS             31682..32566
                     /locus_tag="O3Y_00155"
                     /note="COG0204 1-acyl-sn-glycerol-3-phosphate
                     acyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="YP_005331908.1"
                     /db_xref="GI:379739939"
                     /db_xref="GeneID:11912966"
                     /translation="MLAYLLLTLNVTVVVLNSAFHSLLICLIALIKLLLPSAAWKAQA
                     TQAANWVMWSWASVNAWVLQLSNRVEWDIQGGETLTKQGWYLLISNHLSWTDIVVLCC
                     VFKDRIPMPKFFLKQQLLYVPFIGMACWALDMPFMRRYSREYLLRHPHKRGQDLATTR
                     RSCEKFRAVPTTVVNYVEGTRFNTQKQQRSGVGYQHVLQPKTGGIAYTLAAMGEQFEH
                     IIDVTLAYPDNRQQPFRDLLMGRMQRIVVHIDLLPVDEQVQGDYFNDKQFKRQFQLWL
                     SEVWQRKDQRLEQIYKAD"
     misc_feature    31862..32431
                     /locus_tag="O3Y_00155"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LCLAT1-like; Region:
                     LPLAT_LCLAT1-like; cd07990"
                     /db_xref="CDD:153252"
     misc_feature    order(31952..31954,31961..31963,31967..31969,32024..32035,
                     32216..32224)
                     /locus_tag="O3Y_00155"
                     /note="putative acyl-acceptor binding pocket; other site"
                     /db_xref="CDD:153252"
     gene            complement(32644..33246)
                     /locus_tag="O3Y_00160"
                     /db_xref="GeneID:11912967"
     CDS             complement(32644..33246)
                     /locus_tag="O3Y_00160"
                     /note="COG0526 Thiol-disulfide isomerase and thioredoxins"
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic thiol:disulfide interchange protein
                     DsbA"
                     /protein_id="YP_005331909.1"
                     /db_xref="GI:379739940"
                     /db_xref="GeneID:11912967"
                     /translation="MKKLFALVATLMLSVSAYAAQFKEGEHYQVLKTPASSSPVVNEF
                     FSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVED
                     KMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQ
                     DSGLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVNYLLTLK"
     misc_feature    complement(32662..33177)
                     /locus_tag="O3Y_00160"
                     /note="DsbA family, DsbA subfamily; DsbA is a monomeric
                     thiol disulfide oxidoreductase protein containing a redox
                     active CXXC motif imbedded in a TRX fold. It is involved
                     in the oxidative protein folding pathway in prokaryotes,
                     and is the strongest thiol...; Region: DsbA_DsbA; cd03019"
                     /db_xref="CDD:239317"
     misc_feature    complement(order(32743..32745,33091..33096,33100..33102))
                     /locus_tag="O3Y_00160"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239317"
     misc_feature    complement(33004..33012)
                     /locus_tag="O3Y_00160"
                     /note="hinge region; other site"
                     /db_xref="CDD:239317"
     misc_feature    complement(order(32809..32838,32854..32880,32890..32949,
                     32962..32988))
                     /locus_tag="O3Y_00160"
                     /note="alpha helical domain; other site"
                     /db_xref="CDD:239317"
     gene            complement(33277..34263)
                     /locus_tag="O3Y_00165"
                     /db_xref="GeneID:11912968"
     CDS             complement(33277..34263)
                     /locus_tag="O3Y_00165"
                     /note="COG2334 Putative homoserine kinase type II (protein
                     kinase fold)"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="YP_005331910.1"
                     /db_xref="GI:379739941"
                     /db_xref="GeneID:11912968"
                     /translation="MTQTTFHFDALTPDLIWYALESIGIRAESGFLPLNSYENRVYQF
                     TDEERRRFVVKFYRPQRWTDEQIQEEHDFALELEQEEIPIVPPLRLNGATLHHYQGYR
                     FALFTSMGGRQYEVDNEEHLEWVGRFLGRIHKVGASKPFLHRPTLSLDEYLHQPRHTL
                     EYSHCIPAHLQRVFFHDLDILIAEIKQHWVPTQPQIRLHGDCHPGNILWRDGPMFVDL
                     DDARNGPAIQDLWMLLHGDRQDKLIQLDIVLEGYQEFCDFNPQQLKLIEPLRGLRMVH
                     YMAWLAKRWQDPAFPIAFPWFNDAKYWENQILAFKEQIATLQEPPLSLQPQW"
     misc_feature    complement(33292..34263)
                     /locus_tag="O3Y_00165"
                     /note="serine/threonine protein kinase; Provisional;
                     Region: PRK11768"
                     /db_xref="CDD:236974"
     misc_feature    complement(33466..34155)
                     /locus_tag="O3Y_00165"
                     /note="Phosphotransferase enzyme family; Region: APH;
                     pfam01636"
                     /db_xref="CDD:250760"
     gene            complement(34311..35735)
                     /locus_tag="O3Y_00170"
                     /db_xref="GeneID:11912969"
     CDS             complement(34311..35735)
                     /locus_tag="O3Y_00170"
                     /note="COG0348 Polyferredoxin"
                     /codon_start=1
                     /transl_table=11
                     /product="FixG-likeprotein"
                     /protein_id="YP_005331911.1"
                     /db_xref="GI:379739942"
                     /db_xref="GeneID:11912969"
                     /translation="MSQDKIDVKDVTPKVFNPKTHKGQGGDRFNPSNRIYVRESKGTY
                     QKLRRYGGWFLLLLFGLVPWISYGDRQAILLDIGNQQFNFFGTTLYPQDLTLLALLFM
                     IAAFGLFFITTFLGRVWCGYLCPQTVWTFMYIWFEEKLEGNANKRRKQDNSPMTAELV
                     ARKTLKHIAWLAIALVTGFTFVGYFVPIRALVIDFFTLSAAFWPVFWVLFFALCTYGN
                     AGWMRSIMCIHMCPYARFQSAMFDKDTFIVGYDVARGEQRGPRSRKADPKALGLGDCI
                     DCDLCVQVCPTGIDIRDGLQYECINCGACIDACDNTMERMGYAKGLISYTTEHRLSGK
                     HTKVMRPKLLGYGAVFLVMIGLFFAQVAAVDPAGLTVLRDRTQLFRTNSSGEIENTYN
                     LKVINKTQQPQTYQLSVKGLDPVSWYGKQSVVVQPGEVLNLPMTLGAKPENLSSAVTT
                     IQFILHDESHQFTLEVESRFIQKL"
     misc_feature    complement(34320..35606)
                     /locus_tag="O3Y_00170"
                     /note="cytochrome c oxidase accessory protein FixG;
                     Region: ccoG_rdxA_fixG; TIGR02745"
                     /db_xref="CDD:233993"
     misc_feature    complement(35316..35447)
                     /locus_tag="O3Y_00170"
                     /note="4Fe-4S binding domain; Region: Fer4_5; pfam12801"
                     /db_xref="CDD:257308"
     misc_feature    complement(34860..35060)
                     /locus_tag="O3Y_00170"
                     /note="4Fe-4S dicluster domain; Region: Fer4_18;
                     pfam13746"
                     /db_xref="CDD:258039"
     misc_feature    complement(34323..34643)
                     /locus_tag="O3Y_00170"
                     /note="IG-like fold at C-terminal of FixG, putative
                     oxidoreductase; Region: FixG_C; pfam11614"
                     /db_xref="CDD:256531"
     gene            complement(36152..36418)
                     /locus_tag="O3Y_00175"
                     /db_xref="GeneID:11912970"
     CDS             complement(36152..36418)
                     /locus_tag="O3Y_00175"
                     /note="COG3084 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331912.1"
                     /db_xref="GI:379739943"
                     /db_xref="GeneID:11912970"
                     /translation="MKCHRVEELLQLLEPEWHKDSELNLIQFLLKLAQEAGYQGALED
                     LTDDVLIYHLKMRNSAKDAVIPGLKKDYEDDFKTAILRARGIIK"
     misc_feature    complement(36161..36418)
                     /locus_tag="O3Y_00175"
                     /note="Protein of unknown function (DUF1040); Region:
                     DUF1040; pfam06288"
                     /db_xref="CDD:148100"
     gene            36979..37770
                     /locus_tag="O3Y_00180"
                     /db_xref="GeneID:11912971"
     CDS             36979..37770
                     /locus_tag="O3Y_00180"
                     /note="COG4326 Sporulation control protein"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoOM-likeprotein"
                     /protein_id="YP_005331913.1"
                     /db_xref="GI:379739944"
                     /db_xref="GeneID:11912971"
                     /translation="MSFIKKTLASFGIGSAKVDSVLQQEVLYPGQSVKVIIHVYGGAT
                     AQVIDNIELKLCCCYIAEVADERGQQQGQPMRRVPHTYTLANWSLPYAFTIEAGETRN
                     FDIELSIPWNTPVTIGDAKVWLETGLDIALALDPTDKDILTVRPEPMMDGIFSALEAQ
                     GLRLRQVECEQAKGFALPFVQEFEFVPTTGPFQGRWREVEIVAYRDPEALQLWFEVDR
                     YQRGASGMLASLLGRGELKRHLTLPARTSPQEAGEQVLAFLDRSC"
     misc_feature    36979..37767
                     /locus_tag="O3Y_00180"
                     /note="Sporulation control protein [General function
                     prediction only]; Region: Spo0M; COG4326"
                     /db_xref="CDD:226776"
     gene            37854..38495
                     /locus_tag="O3Y_00185"
                     /db_xref="GeneID:11912972"
     CDS             37854..38495
                     /locus_tag="O3Y_00185"
                     /note="COG1272 Predicted membrane protein, hemolysin III
                     homolog"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin"
                     /protein_id="YP_005331914.1"
                     /db_xref="GI:379739945"
                     /db_xref="GeneID:11912972"
                     /translation="MSNSYGFKEEVANAISHGVGLILGIVGLVLLLVKAVDQQADALT
                     ITSMSIYGGSMIALFLASTLYHAIPYQRAKRWLKTFDHCAIYLLIAGSYTPFLLVSLR
                     TPLAVGLMIVIWSLALIGILMKIAFVYRFKKLSLVTYLTMGWLSLIVIYQLAIHLEVG
                     GLTLLAAGGLIYSLGVIFYVAKRIPYNHAIWHAFVLAGCACHFLAIYLYVEPI"
     misc_feature    37854..38492
                     /locus_tag="O3Y_00185"
                     /note="hemolysin; Provisional; Region: PRK15087"
                     /db_xref="CDD:185044"
     gene            complement(38534..39091)
                     /locus_tag="O3Y_00190"
                     /db_xref="GeneID:11912973"
     CDS             complement(38534..39091)
                     /locus_tag="O3Y_00190"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331915.1"
                     /db_xref="GI:379739946"
                     /db_xref="GeneID:11912973"
                     /translation="MKKLILVASIVSLSTWASETLQLKDGRYIQLNDDFTWQYVPQET
                     QPQQTSELAPLVLAAPVIAQPTLSGVTITVGDHRPVLQLSDSGVDVVLSAPRYEHGQL
                     KLSSAITNQSSQSVIAVRLAIRVQDAQGVWSEEQEVTIWQSIKRMAETYLRPRTSVEG
                     KPLELNLAEQSQYTLHATIKQIETR"
     misc_feature    complement(38540..39091)
                     /locus_tag="O3Y_00190"
                     /note="Protein of unknown function (DUF3157); Region:
                     DUF3157; pfam11355"
                     /db_xref="CDD:256429"
     misc_feature    complement(<38582..38875)
                     /locus_tag="O3Y_00190"
                     /note="Transposase and inactivated derivatives [DNA
                     replication, recombination, and repair]; Region: COG3547"
                     /db_xref="CDD:226077"
     gene            complement(39103..40548)
                     /locus_tag="O3Y_00195"
                     /db_xref="GeneID:11912974"
     CDS             complement(39103..40548)
                     /locus_tag="O3Y_00195"
                     /note="COG0168 Trk-type K+ transport systems, membrane
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium uptake protein TrkH"
                     /protein_id="YP_005331916.1"
                     /db_xref="GI:379739947"
                     /db_xref="GeneID:11912974"
                     /translation="MLNLRPITFIIGLVLSKLALFMYVPTLVAFFTGSGGFLDFAQAV
                     IITHLVAFLCLSIGRTEHFRLNVRDMFLITSLVWTIASAFAALPFVFINHISFTDAYF
                     ETMSGLTTTGSTVLSGLDDMPPSILLWRSILQWLGGVGFIVMAVAVLPMLNVGGMKLF
                     QTESSDWSDKSSPRAKTVAKNIVAVYLVLTGLCFLSYIATGMTPFEAINHAFTTLSTG
                     GYSTSDSSMNRFSHGAHWVGTLFMFLGGLPFLLFVQALRKQSARALLKDEQVRGFFWL
                     FMISSLLVAGWLWLKNDYAILDALRVSMFNIVSVVTTTGYGLDDFTAWGALPSTIFAF
                     LLMAGACSGSTSGGIKVFRFQIAMALLKKQLLNLIHPSGIFIQRYNKRPVNEEIIRSV
                     VAFGLTFFITIVVLAGALSAMGLDSVTSISGAVTAVANVGPGMGSIIGPTGNFAPLPD
                     AAKWLLSFGMLMGRLEILTILVLFFPAFWRH"
     misc_feature    complement(39109..40545)
                     /locus_tag="O3Y_00195"
                     /note="Cation transport protein; Region: TrkH; cl17365"
                     /db_xref="CDD:266653"
     misc_feature    complement(39106..40542)
                     /locus_tag="O3Y_00195"
                     /note="Trk-type K+ transport systems, membrane components
                     [Inorganic ion transport and metabolism]; Region: TrkG;
                     COG0168"
                     /db_xref="CDD:223246"
     gene            complement(40560..41936)
                     /gene="trkA"
                     /locus_tag="O3Y_00200"
                     /db_xref="GeneID:11912975"
     CDS             complement(40560..41936)
                     /gene="trkA"
                     /locus_tag="O3Y_00200"
                     /note="COG0569 K+ transport systems, NAD-binding
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter peripheral membrane
                     protein"
                     /protein_id="YP_005331917.1"
                     /db_xref="GI:379739948"
                     /db_xref="GeneID:11912975"
                     /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDKNADRLRDLQDKYD
                     LRVVNGHASHPDVLREAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSP
                     QYLAEKEALFQSGAVPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEEKVSLVAVKA
                     YYGGPLVGNALSALRDHMPHIDTRVAAIFRQGRPIRPQGTTIIEADDEVFFVAASNHI
                     RSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIEHNYQRAEQLSEQLEN
                     TIVFCGDAADQELLSEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKAMVLIQRSG
                     YVDLVQGGVIDVAISPQQATISALLTHVRRADIVNVSSLRRGAAEAIEAIAHGDESTS
                     KVVGRAVGDIKLPPGTTIGAIVRGEEVLIAHDRTVIEQDDHVVMFLVDKKYVPDVETL
                     FQPSPFFL"
     misc_feature    complement(40569..41936)
                     /gene="trkA"
                     /locus_tag="O3Y_00200"
                     /note="potassium transporter peripheral membrane
                     component; Reviewed; Region: trkA; PRK09496"
                     /db_xref="CDD:236541"
     misc_feature    complement(41562..41930)
                     /gene="trkA"
                     /locus_tag="O3Y_00200"
                     /note="TrkA-N domain; Region: TrkA_N; pfam02254"
                     /db_xref="CDD:251184"
     misc_feature    complement(order(41721..41726,41844..41852,41904..41906,
                     41910..41918))
                     /gene="trkA"
                     /locus_tag="O3Y_00200"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:240631"
     misc_feature    complement(41274..41474)
                     /gene="trkA"
                     /locus_tag="O3Y_00200"
                     /note="TrkA-C domain; Region: TrkA_C; pfam02080"
                     /db_xref="CDD:251075"
     misc_feature    complement(40887..41234)
                     /gene="trkA"
                     /locus_tag="O3Y_00200"
                     /note="TrkA-N domain; Region: TrkA_N; pfam02254"
                     /db_xref="CDD:251184"
     misc_feature    complement(40596..40772)
                     /gene="trkA"
                     /locus_tag="O3Y_00200"
                     /note="TrkA-C domain; Region: TrkA_C; pfam02080"
                     /db_xref="CDD:251075"
     gene            complement(41998..43278)
                     /locus_tag="O3Y_00205"
                     /db_xref="GeneID:11912976"
     CDS             complement(41998..43278)
                     /locus_tag="O3Y_00205"
                     /note="COG0144 tRNA and rRNA cytosine-C5-methylases"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA methyltransferase B"
                     /protein_id="YP_005331918.1"
                     /db_xref="GI:379739949"
                     /db_xref="GeneID:11912976"
                     /translation="MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEIC
                     YGVLRQLPRLESISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGA
                     QDLKGPRLRGLINAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQ
                     IVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLP
                     GFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCD
                     ETRLKRVRENLQRLELTAQVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDI
                     KWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPD
                     ARLVGSDPAQPGRQILPGEEAMDGFYYAVLSKQH"
     misc_feature    complement(42004..43278)
                     /locus_tag="O3Y_00205"
                     /note="16S rRNA methyltransferase B; Provisional; Region:
                     PRK10901"
                     /db_xref="CDD:236790"
     misc_feature    complement(42904..43278)
                     /locus_tag="O3Y_00205"
                     /note="N-terminal RNA binding domain of the
                     methyltransferase Sun. The rRNA-specific 5-methylcytidine
                     transferase Sun, also known as RrmB or Fmu shares the
                     RNA-binding non-catalytic domain with the transcription
                     termination factor NusB. The precise biological...;
                     Region: Methyltransferase_Sun; cd00620"
                     /db_xref="CDD:238343"
     misc_feature    complement(43267..43278)
                     /locus_tag="O3Y_00205"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238343"
     misc_feature    complement(42172..42540)
                     /locus_tag="O3Y_00205"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    complement(order(42322..42324,42376..42384,42454..42459,
                     42511..42531))
                     /locus_tag="O3Y_00205"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            complement(43334..44281)
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /db_xref="GeneID:11912977"
     CDS             complement(43334..44281)
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /EC_number="2.1.2.9"
                     /note="COG0223 Methionyl-tRNA formyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="YP_005331919.1"
                     /db_xref="GI:379739950"
                     /db_xref="GeneID:11912977"
                     /translation="MSQSLRIVFAGTPDFAARHLAALLSSEHEIIAVYTQPERPAGRG
                     KKLTASPVKTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAYGLLLPKVVLDT
                     PKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIMQMDVGLDTGDMLKIATLPIE
                     ASDTSASMYDKLAELGPQALLECLQDIAQGTAVAVKQDDGLANYAHKLSKEEARINWS
                     DAATHIERCIRAFNPWPMSHFEVAENSIKVWQARVETRAVTQTPGTIIQADKSGIYVA
                     TGQDVLVLESLQIPGKKALPVQDILNARADWFSVGSQLS"
     misc_feature    complement(43337..44269)
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /note="methionyl-tRNA formyltransferase; Reviewed; Region:
                     fmt; PRK00005"
                     /db_xref="CDD:234567"
     misc_feature    complement(43658..44269)
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /note="Methionyl-tRNA formyltransferase, N-terminal
                     hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
                     cd08646"
                     /db_xref="CDD:187715"
     misc_feature    complement(order(43841..43846,43853..43858,43862..43864,
                     43922..43924,43946..43957,43982..43984,43997..44020,
                     44234..44239,44249..44251))
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /note="putative active site [active]"
                     /db_xref="CDD:187715"
     misc_feature    complement(order(43661..43663,43916..43924,43946..43951,
                     43955..43957,44006..44017,44147..44158,44162..44164,
                     44174..44176,44237..44239,44243..44248))
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187715"
     misc_feature    complement(order(43841..43846,43853..43858,43955..43957,
                     43982..43984,43997..44005,44009..44011,44018..44020))
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /note="putative cosubstrate binding site; other site"
                     /db_xref="CDD:187715"
     misc_feature    complement(order(43841..43843,43949..43951,43955..43957))
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187715"
     misc_feature    complement(43391..43651)
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /note="C-terminal domain of Formyltransferase and other
                     enzymes; Region: Met_tRNA_FMT_C; cd08704"
                     /db_xref="CDD:187732"
     misc_feature    complement(order(43397..43399,43403..43408,43412..43414,
                     43418..43420,43541..43543,43547..43549,43580..43582))
                     /gene="fmt"
                     /locus_tag="O3Y_00210"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187732"
     gene            complement(44299..44808)
                     /gene="def"
                     /locus_tag="O3Y_00215"
                     /db_xref="GeneID:11912978"
     CDS             complement(44299..44808)
                     /gene="def"
                     /locus_tag="O3Y_00215"
                     /EC_number="3.5.1.88"
                     /note="COG0242 N-formylmethionyl-tRNA deformylase"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="YP_005331920.1"
                     /db_xref="GI:379739951"
                     /db_xref="GeneID:11912978"
                     /translation="MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEG
                     IGLAATQVDIHQRIVVIDISETRDQPMVLINPEIIEKRGEDGIEEGCLSVPGARALVP
                     RAAEVTVKALDRNGQEYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLE
                     KIKRFNEKK"
     misc_feature    complement(44380..44793)
                     /gene="def"
                     /locus_tag="O3Y_00215"
                     /note="Polypeptide or peptide deformylase; a family of
                     metalloenzymes that catalyzes the removal of the
                     N-terminal formyl group in a growing polypeptide chain
                     following translation initiation during protein synthesis
                     in prokaryotes. These enzymes utilize Fe(II)...; Region:
                     Pep_deformylase; cd00487"
                     /db_xref="CDD:238271"
     misc_feature    complement(order(44398..44400,44407..44412,44533..44541,
                     44656..44658,44671..44679))
                     /gene="def"
                     /locus_tag="O3Y_00215"
                     /note="active site"
                     /db_xref="CDD:238271"
     misc_feature    complement(order(44407..44409,44533..44535,44656..44658,
                     44671..44673))
                     /gene="def"
                     /locus_tag="O3Y_00215"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:238271"
     misc_feature    complement(order(44398..44400,44410..44412,44536..44538))
                     /gene="def"
                     /locus_tag="O3Y_00215"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238271"
     gene            44948..46075
                     /locus_tag="O3Y_00220"
                     /db_xref="GeneID:11912979"
     CDS             44948..46075
                     /locus_tag="O3Y_00220"
                     /note="COG1652 Uncharacterized protein containing LysM
                     domain"
                     /codon_start=1
                     /transl_table=11
                     /product="LysM domain-containing protein"
                     /protein_id="YP_005331921.1"
                     /db_xref="GI:379739952"
                     /db_xref="GeneID:11912979"
                     /translation="MARLTRYITYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVK
                     GDTLWDISALYLDSPWLWPRLWQVNPEIDNPHLIYPGDKLTLFWRDGQPELSLKPMRK
                     LSPQVRVLEKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRVIGSSEGRQYLTKQDQL
                     YISGVHSEKKWGIYREVAQYQRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEIL
                     ANDIALPEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDG
                     VAQGSMFELYQAAVQVKAKQDSSTFLSERSNTDVQLPSVKVGALMVIRPYERFSLALI
                     TNSSAPISAEVHALSPQAEPQTEQPDVVQLSEQIDLVDDAS"
     misc_feature    <45005..45205
                     /locus_tag="O3Y_00220"
                     /note="Uncharacterized protein containing LysM domain
                     [Function unknown]; Region: XkdP; COG1652"
                     /db_xref="CDD:224566"
     misc_feature    45059..45205
                     /locus_tag="O3Y_00220"
                     /note="Lysine Motif is a small domain involved in binding
                     peptidoglycan; Region: LysM; cd00118"
                     /db_xref="CDD:212030"
     misc_feature    45164..46063
                     /locus_tag="O3Y_00220"
                     /note="Uncharacterized protein containing LysM domain
                     [Function unknown]; Region: XkdP; COG1652"
                     /db_xref="CDD:224566"
     gene            46075..47190
                     /locus_tag="O3Y_00225"
                     /db_xref="GeneID:11912980"
     CDS             46075..47190
                     /locus_tag="O3Y_00225"
                     /note="COG0758 Predicted Rossmann fold nucleotide-binding
                     protein involved in DNA uptake"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA processing protein"
                     /protein_id="YP_005331922.1"
                     /db_xref="GI:379739953"
                     /db_xref="GeneID:11912980"
                     /translation="MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWL
                     ACGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIVTPHCPLYPRLLKEINSSPPVLF
                     IEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
                     ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRI
                     ISGLSLGVVVVEAAEKSGSLITARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACL
                     VQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQSDEELPFPELLANVGIEATPIDIL
                     ASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG"
     misc_feature    46075..47178
                     /locus_tag="O3Y_00225"
                     /note="Predicted Rossmann fold nucleotide-binding protein
                     involved in DNA uptake [DNA replication, recombination,
                     and repair / Intracellular trafficking and secretion];
                     Region: Smf; COG0758"
                     /db_xref="CDD:223829"
     misc_feature    46309..46911
                     /locus_tag="O3Y_00225"
                     /note="DNA recombination-mediator protein A; Region:
                     DNA_processg_A; pfam02481"
                     /db_xref="CDD:251323"
     gene            47196..47669
                     /locus_tag="O3Y_00230"
                     /db_xref="GeneID:11912981"
     CDS             47196..47669
                     /locus_tag="O3Y_00230"
                     /note="COG2922 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331923.1"
                     /db_xref="GI:379739954"
                     /db_xref="GeneID:11912981"
                     /translation="MMDILMYLFETYVHSDADLQVDQDQLEDELLRAGFHQKDIYKAL
                     HWLEELAALQQTDAQTAIAKSAPTSMRIYAPEEIERLDLESRGFLLFLEHINVLTPET
                     REMVIDRVMGLETDEFELDDLKWIILMVLFNVPGNENAYTVMEELLYSKEQGILH"
     misc_feature    47196..47666
                     /locus_tag="O3Y_00230"
                     /note="hypothetical protein; Validated; Region: PRK03430"
                     /db_xref="CDD:235125"
     gene            47685..48251
                     /locus_tag="O3Y_00235"
                     /db_xref="GeneID:11912982"
     CDS             47685..48251
                     /locus_tag="O3Y_00235"
                     /note="COG0551 Zn-finger domain associated with
                     topoisomerase type I"
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="YP_005331924.1"
                     /db_xref="GI:379739955"
                     /db_xref="GeneID:11912982"
                     /translation="MSRKIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLGCTA
                     YPECDYIKPLHQNDGHIIKELGVPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESMD
                     SPSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNSKPIAQACAQCG
                     FTVMVEKKSAAGMRYQCANRQCGHIQEC"
     misc_feature    47748..47855
                     /locus_tag="O3Y_00235"
                     /note="Topoisomerase DNA binding C4 zinc finger; Region:
                     zf-C4_Topoisom; pfam01396"
                     /db_xref="CDD:110400"
     misc_feature    47817..48248
                     /locus_tag="O3Y_00235"
                     /note="Zn-finger domain associated with topoisomerase type
                     I [DNA replication, recombination, and repair]; Region:
                     TopA; COG0551"
                     /db_xref="CDD:223625"
     misc_feature    47880..47984
                     /locus_tag="O3Y_00235"
                     /note="Topoisomerase DNA binding C4 zinc finger; Region:
                     zf-C4_Topoisom; pfam01396"
                     /db_xref="CDD:110400"
     misc_feature    48018..48140
                     /locus_tag="O3Y_00235"
                     /note="Topoisomerase DNA binding C4 zinc finger; Region:
                     zf-C4_Topoisom; pfam01396"
                     /db_xref="CDD:110400"
     gene            complement(48324..49457)
                     /locus_tag="O3Y_00240"
                     /db_xref="GeneID:11912983"
     CDS             complement(48324..49457)
                     /locus_tag="O3Y_00240"
                     /EC_number="4.1.1.21"
                     /note="COG0026 Phosphoribosylaminoimidazole carboxylase
                     (NCAIR synthetase)"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazole carboxylase ATPase
                     subunit"
                     /protein_id="YP_005331925.1"
                     /db_xref="GI:379739956"
                     /db_xref="GeneID:11912983"
                     /translation="MRVLVLGAGQLARMMSLAGAPLNIETIAFDVGSENIVHPLTQTV
                     LGHGLEQAIEQVDVITAEFEHIPHPILDLCARSGKLYPSAEAIKAGGDRRLEKALLDR
                     AQVANARYTMIRSRDDLTSAIAEIGLPMVLKSALGGYDGKGQWRLKEPTQIESVWQEL
                     AQYLAANPEQAIVAEEFVAFDREVSLVGARNLVGDVVVYPLAENVHTQGVLSLSTAID
                     APALQTQAKAMFKAVAEQLNYVGVLALEFFEVQGQLLVNEIAPRVHNSGHWTQQGAET
                     CQFENHLRAVCGLPLGSTKLVRETAMINILGEDQLPAEVLALEGCHVHWYGKAKRSGR
                     KMGHINVTADYSGELQRKLCQLATVLDEKAFPAVHAVAKEIQP"
     misc_feature    complement(48387..49457)
                     /locus_tag="O3Y_00240"
                     /note="phosphoribosylaminoimidazole carboxylase ATPase
                     subunit; Reviewed; Region: PRK06019"
                     /db_xref="CDD:235674"
     misc_feature    complement(48636..49160)
                     /locus_tag="O3Y_00240"
                     /note="ATP-grasp domain; Region: ATP-grasp_4; cl17255"
                     /db_xref="CDD:271806"
     gene            complement(49461..49946)
                     /locus_tag="O3Y_00245"
                     /db_xref="GeneID:11912984"
     CDS             complement(49461..49946)
                     /locus_tag="O3Y_00245"
                     /note="COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR)
                     mutase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazole carboxylase
                     catalytic subunit"
                     /protein_id="YP_005331926.1"
                     /db_xref="GI:379739957"
                     /db_xref="GeneID:11912984"
                     /translation="MTVGIIMGSKSDWPTMKHAAEMLDQFGVAYETKVVSAHRTPHLL
                     ADYASSAKERGLQVIIAGAGGAAHLPGMTAAFTSLPVLGVPVQSRALSGLDSLYSIVQ
                     MPKGIAVGTLAIGEAGAANAGLLAAQIIGIHNPEVMSKVEAFRAKQTQSVLDNPNPAE
                     E"
     misc_feature    complement(49464..49946)
                     /locus_tag="O3Y_00245"
                     /note="Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
                     [Nucleotide transport and metabolism]; Region: PurE;
                     COG0041"
                     /db_xref="CDD:223119"
     gene            50104..50670
                     /locus_tag="O3Y_00250"
                     /db_xref="GeneID:11912985"
     CDS             50104..50670
                     /locus_tag="O3Y_00250"
                     /note="COG0009 Putative translation factor (SUA5)"
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC family protein"
                     /protein_id="YP_005331927.1"
                     /db_xref="GI:379739958"
                     /db_xref="GeneID:11912985"
                     /translation="MALVENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLL
                     AIKQRPVEKGVILIAASYAQLRPYVDETQLTAEQLTQVLASWPAPLTWVMPASGDTPS
                     WVRGQFDTVAVRVSDHPVVQKLCLAFGKPLTSTSANLSGQPACVTQQEVMVQLGNQIA
                     VVVEGKTSGRHGPSEIRDARSLQVLRQG"
     misc_feature    50122..50667
                     /locus_tag="O3Y_00250"
                     /note="Telomere recombination; Region: Sua5_yciO_yrdC;
                     cl00305"
                     /db_xref="CDD:260340"
     gene            50689..51606
                     /locus_tag="O3Y_00255"
                     /db_xref="GeneID:11912986"
     CDS             50689..51606
                     /locus_tag="O3Y_00255"
                     /EC_number="1.3.3.3"
                     /note="COG0408 Coproporphyrinogen III oxidase"
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase"
                     /protein_id="YP_005331928.1"
                     /db_xref="GI:379739959"
                     /db_xref="GeneID:11912986"
                     /translation="MESIVDKQAVKHFLLQLQDKICQQLEATDGQAQFIEDAWQREPG
                     EKLGGGGRTRVMREGAVFEQGGVNFSHVFGEQMPASATAHRPELAGRRFEAMGVSLVM
                     HPKNPYVPTSHANVRFFIAEKEGEAPIWWFGGGFDLTPFYPFVEDGQHWHQTAKNICA
                     PFGSEIYNEHKAWCDRYFYLPHRNETRGIGGLFFDDLNEWSFEQCFAYMQAVGEGYTQ
                     AYVPIVEKRKNTPFTERERQFQLYRRGRYVEFNLVLDRGTLFGLQTGGRTESILMSMP
                     PLARWEYAYQPQAGTPEAKLSEFLVPREW"
     misc_feature    50689..51603
                     /locus_tag="O3Y_00255"
                     /note="coproporphyrinogen III oxidase; Provisional;
                     Region: PRK05330"
                     /db_xref="CDD:235413"
     gene            51668..52504
                     /gene="aroE"
                     /locus_tag="O3Y_00260"
                     /db_xref="GeneID:11912987"
     CDS             51668..52504
                     /gene="aroE"
                     /locus_tag="O3Y_00260"
                     /EC_number="1.1.1.25"
                     /note="COG0169 Shikimate 5-dehydrogenase"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate 5-dehydrogenase"
                     /protein_id="YP_005331929.1"
                     /db_xref="GI:379739960"
                     /db_xref="GeneID:11912987"
                     /translation="MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPV
                     DGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILG
                     DNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKA
                     EQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMM
                     YGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEG
                     AL"
     misc_feature    51668..52495
                     /gene="aroE"
                     /locus_tag="O3Y_00260"
                     /note="shikimate 5-dehydrogenase; Reviewed; Region: aroE;
                     PRK00258"
                     /db_xref="CDD:234703"
     misc_feature    51695..51943
                     /gene="aroE"
                     /locus_tag="O3Y_00260"
                     /note="Shikimate dehydrogenase substrate binding domain;
                     Region: Shikimate_dh_N; pfam08501"
                     /db_xref="CDD:254837"
     misc_feature    51980..52441
                     /gene="aroE"
                     /locus_tag="O3Y_00260"
                     /note="NAD(P) binding domain of Shikimate dehydrogenase;
                     Region: NAD_bind_Shikimate_DH; cd01065"
                     /db_xref="CDD:133443"
     misc_feature    order(51983..51985,52322..52324,52400..52402,52409..52411)
                     /gene="aroE"
                     /locus_tag="O3Y_00260"
                     /note="shikimate binding site; other site"
                     /db_xref="CDD:133443"
     misc_feature    order(52058..52060,52067..52069,52127..52132,52238..52246,
                     52316..52318,52388..52390,52397..52402)
                     /gene="aroE"
                     /locus_tag="O3Y_00260"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:133443"
     gene            52501..52776
                     /locus_tag="O3Y_00265"
                     /db_xref="GeneID:11912988"
     CDS             52501..52776
                     /locus_tag="O3Y_00265"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331930.1"
                     /db_xref="GI:379739961"
                     /db_xref="GeneID:11912988"
                     /translation="MNQSILFPDLQHWDEAKQAVVFFAQQNGALIECLVARQVLQELS
                     GEALAESQHVMTAFSEWRFDLEELAEQAIENEMFNSLGQIEITRERF"
     misc_feature    52510..52761
                     /locus_tag="O3Y_00265"
                     /note="Protein of unknown function (DUF1488); Region:
                     DUF1488; pfam07369"
                     /db_xref="CDD:191733"
     gene            complement(52757..53308)
                     /locus_tag="O3Y_00270"
                     /db_xref="GeneID:11912989"
     CDS             complement(52757..53308)
                     /locus_tag="O3Y_00270"
                     /note="COG0663 Carbonic anhydrases/acetyltransferases,
                     isoleucine patch superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase family 3"
                     /protein_id="YP_005331931.1"
                     /db_xref="GI:379739962"
                     /db_xref="GeneID:11912989"
                     /translation="MSSIRSYKGIVPKLGEGVYVDSSAVLVGDIELGDDASIWPLVAA
                     RGDVNHIRIGKRTNIQDGSVLHVTHKNAENPNGYPLCIGDDVTIGHKVMLHGCTIHDR
                     VLVGMGSIVLDGAVIENDVMIGAGSLVPPGKRLESGFLYMGSPVKQARPLNDKERAFL
                     VKSSSNYVQSKNDYLNDVKTVRE"
     misc_feature    complement(52760..53308)
                     /locus_tag="O3Y_00270"
                     /note="Carbonic anhydrases/acetyltransferases, isoleucine
                     patch superfamily [General function prediction only];
                     Region: PaaY; COG0663"
                     /db_xref="CDD:223735"
     misc_feature    complement(52802..53272)
                     /locus_tag="O3Y_00270"
                     /note="Gamma carbonic anhydrase-like: This family is
                     composed of gamma carbonic anhydrase (CA), Ferripyochelin
                     Binding Protein (FBP), E. coli paaY protein, and similar
                     proteins. CAs are zinc-containing enzymes that catalyze
                     the reversible hydration of carbon...; Region:
                     LbH_gamma_CA_like; cd04645"
                     /db_xref="CDD:100051"
     misc_feature    complement(order(52988..52990,53024..53026,53030..53041,
                     53111..53113,53123..53128,53168..53170,53174..53176,
                     53180..53185,53192..53194,53228..53230,53237..53242,
                     53246..53248,53252..53254))
                     /locus_tag="O3Y_00270"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:100051"
     misc_feature    complement(order(53024..53026,53039..53041,53111..53113))
                     /locus_tag="O3Y_00270"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:100051"
     gene            53497..53637
                     /locus_tag="O3Y_00275"
                     /db_xref="GeneID:11912990"
     CDS             53497..53637
                     /locus_tag="O3Y_00275"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331932.1"
                     /db_xref="GI:379739963"
                     /db_xref="GeneID:11912990"
                     /translation="MIQLGVLGREIANENKLKKVFDTTVYLAKMAASSEADCKEERSL
                     TI"
     gene            53817..55360
                     /locus_tag="O3Y_r13483"
                     /db_xref="GeneID:11912991"
     rRNA            53817..55360
                     /locus_tag="O3Y_r13483"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:11912991"
     gene            55421..55496
                     /locus_tag="O3Y_t13277"
                     /db_xref="GeneID:11912992"
     tRNA            55421..55496
                     /locus_tag="O3Y_t13277"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:11912992"
     gene            55782..58679
                     /locus_tag="O3Y_r13499"
                     /db_xref="GeneID:11912993"
     rRNA            55782..58679
                     /locus_tag="O3Y_r13499"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:11912993"
     gene            58800..58915
                     /locus_tag="O3Y_r13465"
                     /db_xref="GeneID:11912994"
     rRNA            58800..58915
                     /locus_tag="O3Y_r13465"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:11912994"
     gene            58941..59017
                     /locus_tag="O3Y_t13279"
                     /db_xref="GeneID:11912995"
     tRNA            58941..59017
                     /locus_tag="O3Y_t13279"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:11912995"
     gene            59047..59123
                     /locus_tag="O3Y_t13281"
                     /db_xref="GeneID:11912996"
     tRNA            59047..59123
                     /locus_tag="O3Y_t13281"
                     /product="tRNA-Trp"
                     /db_xref="GeneID:11912996"
     gene            59356..59736
                     /locus_tag="O3Y_00280"
                     /db_xref="GeneID:11912997"
     CDS             59356..59736
                     /locus_tag="O3Y_00280"
                     /note="COG0239 Integral membrane protein possibly involved
                     in chromosome condensation"
                     /codon_start=1
                     /transl_table=11
                     /product="camphor resistance protein CrcB"
                     /protein_id="YP_005331933.1"
                     /db_xref="GI:379739964"
                     /db_xref="GeneID:11912997"
                     /translation="MSFAILGFIALGGAVGACARFLVSEICVTLFGRGFPIGTLTVNV
                     VGSFIMGVLIACVENEWLSPYPWKQVIGLGFLGALTTFSTFSMDNVLLMQQGAFFKMG
                     ANVLLNVILSISAAWIGFHWLMKS"
     misc_feature    59356..59733
                     /locus_tag="O3Y_00280"
                     /note="camphor resistance protein CrcB; Provisional;
                     Region: PRK14200"
                     /db_xref="CDD:237638"
     gene            59988..61925
                     /locus_tag="O3Y_00285"
                     /db_xref="GeneID:11912998"
     CDS             59988..61925
                     /locus_tag="O3Y_00285"
                     /note="COG0422 Thiamine biosynthesis protein ThiC"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiC"
                     /protein_id="YP_005331934.1"
                     /db_xref="GI:379739965"
                     /db_xref="GeneID:11912998"
                     /translation="MSNRKQARLEAKRFIDTLSVEPYPNSQKSYLLGSRPDIRVPVRE
                     ITLSDTLVGGSKDAPIFEPNEPICVYDTSGVYTDPSHDIDLYKGLPKLREEWIEERRD
                     THILPSMSSHFARERLADETLDELRYGHLPRIRRAMGQHRVTQLHYARQGIITPEMEF
                     VAIRENSRRLAHQDPSLLQQHAGQNFGAHLPDLITPEFVRREIAEGRAIIPCNINHPE
                     SEPMIIGRNFLVKVNANIGNSSVSSSIEEEVEKLVWATRWGADTVMDLSTGRNIHETR
                     EWILRNSPVPIGTVPMYQALEKVNGVAENLTWEVMRDTLLEQAEQGVDYFTIHAGLLL
                     RYVPMTAKRVTGIVSRGGSIIAKWCLSHHQENFLYTHFREICEICAQYDVALSLGDGL
                     RPGSIADANDEAQFAELRTLGELTQIAWEYDVQVMIEGPGHVPMHLIKANMDEQLKHC
                     HEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKT
                     GLITYKLAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLALDPVTARAFHDETL
                     PQESGKVAHFCSMCGPKFCSMKISQEVRDYANNQTLDTTVIDLVMPAESIQLAMQDKS
                     REFLASGAELYHPLVKEPIEE"
     misc_feature    60000..61901
                     /locus_tag="O3Y_00285"
                     /note="thiamine biosynthesis protein ThiC; Provisional;
                     Region: PRK09284"
                     /db_xref="CDD:236451"
     misc_feature    60048..60296
                     /locus_tag="O3Y_00285"
                     /note="ThiC-associated domain; Region: ThiC-associated;
                     pfam13667"
                     /db_xref="CDD:257973"
     misc_feature    60408..61778
                     /locus_tag="O3Y_00285"
                     /note="Thiamine biosynthesis protein ThiC [Coenzyme
                     metabolism]; Region: ThiC; COG0422"
                     /db_xref="CDD:223499"
     gene            61929..63251
                     /gene="thiE"
                     /locus_tag="O3Y_00290"
                     /db_xref="GeneID:11912999"
     CDS             61929..63251
                     /gene="thiE"
                     /locus_tag="O3Y_00290"
                     /EC_number="2.5.1.3"
                     /note="COG0352 Thiamine monophosphate synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate pyrophosphorylase"
                     /protein_id="YP_005331935.1"
                     /db_xref="GI:379739966"
                     /db_xref="GeneID:11912999"
                     /translation="MVRLVFPRHLSALIGHVQYALLQAKEQGVAIQHIRLDVGSEAQF
                     ILEKSEESLRIGSSLCSQKEGFEPCDYYLDYVSENRVLPEAMMCNARCTVTVGLHDEY
                     GFTLDKWQYGHAAEQLIVYPSENHRLNSKVNQHLAWVLATLTLDFSIGDGLCIARAAI
                     TQGDSVSRETWPTQFERFPAVQSNIRSLSTQVFLTTRAFPTIDKAKFNLYPVVDDVNW
                     IEHLLKLGVRTVQLRIKDPKQGDLEAQIIRAIALGREFNAQVFINDHWQLAIKHQAYG
                     VHLGQEDLTSANLTELLDAGIRLGLSTHGYYELLIAAGIQPSYIALGHIFPTTTKQMP
                     SKPQGLVRLAAYQRLVNQMPYQGQHGIPTVAIGGIDCRNIRDVLDCGVTAVAVVRAIT
                     ESPDPSLAVQALSSAFADFVDAEYKLMPASESCEPLSYLAMEVADAHR"
     misc_feature    61929..63242
                     /gene="thiE"
                     /locus_tag="O3Y_00290"
                     /note="thiamine-phosphate pyrophosphorylase; Reviewed;
                     Region: thiE; PRK12290"
                     /db_xref="CDD:237041"
     misc_feature    62553..63140
                     /gene="thiE"
                     /locus_tag="O3Y_00290"
                     /note="Thiamine monophosphate synthase (TMP
                     synthase)/TenI. TMP synthase catalyzes an important step
                     in the thiamine biosynthesis pathway, the substitution of
                     the pyrophosphate of 2-methyl-4-amino-5-
                     hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
                     Region: TMP_TenI; cd00564"
                     /db_xref="CDD:238317"
     misc_feature    order(62556..62558,62562..62564,62619..62621,62625..62627,
                     62760..62762,62832..62834,62883..62885,62889..62891,
                     62910..62912,62916..62918,63018..63020,63030..63032,
                     63084..63095)
                     /gene="thiE"
                     /locus_tag="O3Y_00290"
                     /note="thiamine phosphate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:238317"
     misc_feature    order(62619..62621,62625..62627,62631..62633,62715..62720,
                     62775..62777,62832..62834,62910..62912,62916..62921,
                     63030..63032,63090..63095)
                     /gene="thiE"
                     /locus_tag="O3Y_00290"
                     /note="active site"
                     /db_xref="CDD:238317"
     misc_feature    order(62625..62627,62631..62633,62715..62720,62766..62768,
                     62775..62777,62832..62834,62919..62921)
                     /gene="thiE"
                     /locus_tag="O3Y_00290"
                     /note="pyrophosphate binding site [ion binding]; other
                     site"
                     /db_xref="CDD:238317"
     gene            63238..64014
                     /locus_tag="O3Y_00295"
                     /db_xref="GeneID:11913000"
     CDS             63238..64014
                     /locus_tag="O3Y_00295"
                     /note="COG0476 Dinucleotide-utilizing enzymes involved in
                     molybdopterin and thiamine biosynthesis family 2"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF protein"
                     /protein_id="YP_005331936.1"
                     /db_xref="GI:379739967"
                     /db_xref="GeneID:11913000"
                     /translation="MLTDKQFLRYQRQISLAELGEEGQQKLLNSRVLIVGCGGLGNVV
                     APYLVGAGVGQVIIADSDRLELHNLHRQICYHEAQIGHNKAELLARYLRELNSEVRVR
                     VIAREVDELILNLEINQVDLVLDCSDNLPTRHAINRACYAAQRPLISGAVIGWEGHLM
                     AFDYRQSTPCYQCVVPDMAERQRCSDRGVIGPVVGMIGNGQALIALHALMGSAHFPAN
                     QLLRFDGKSMNWQSLQLHPDKVCPVCSVSSPAQPKEPQPC"
     misc_feature    63262..63942
                     /locus_tag="O3Y_00295"
                     /note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
                     in molybdopterin and thiamine biosynthesis family. The
                     common reaction mechanism catalyzed by MoeB and ThiF, like
                     other E1 enzymes, begins with a nucleophilic attack of the
                     C-terminal carboxylate of MoaD...; Region:
                     ThiF_MoeB_HesA_family; cd00757"
                     /db_xref="CDD:238386"
     misc_feature    63262..63864
                     /locus_tag="O3Y_00295"
                     /note="thiazole biosynthesis adenylyltransferase ThiF, E.
                     coli subfamily; Region: adenyl_thiF; TIGR02356"
                     /db_xref="CDD:162820"
     misc_feature    order(63343..63345,63349..63351,63355..63357,63415..63417,
                     63421..63423,63448..63450,63487..63489,63613..63615,
                     63631..63633)
                     /locus_tag="O3Y_00295"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238386"
     misc_feature    order(63355..63357,63616..63624,63634..63636,63688..63693,
                     63703..63705,63709..63711,63895..63897,63907..63909,
                     63928..63930,63934..63939)
                     /locus_tag="O3Y_00295"
                     /note="substrate interface [chemical binding]; other site"
                     /db_xref="CDD:238386"
     gene            64014..64214
                     /locus_tag="O3Y_00300"
                     /db_xref="GeneID:11913001"
     CDS             64014..64214
                     /locus_tag="O3Y_00300"
                     /note="COG2104 Sulfur transfer protein involved in
                     thiamine biosynthesis"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="YP_005331937.1"
                     /db_xref="GI:379739968"
                     /db_xref="GeneID:11913001"
                     /translation="MTIYLNQQAIQTDISSSLFHLHAQLSLPSQGCVFSLNGQVVPRS
                     EWQHTKLNSGDEISLFQAIAGG"
     misc_feature    64017..64211
                     /locus_tag="O3Y_00300"
                     /note="ThiaminS ubiquitin-like sulfur carrier protein;
                     Region: ThiS; cd00565"
                     /db_xref="CDD:176353"
     misc_feature    order(64131..64133,64185..64193)
                     /locus_tag="O3Y_00300"
                     /note="thiS-thiF/thiG interaction site; other site"
                     /db_xref="CDD:176353"
     gene            64220..64990
                     /gene="thiG"
                     /locus_tag="O3Y_00305"
                     /db_xref="GeneID:11913002"
     CDS             64220..64990
                     /gene="thiG"
                     /locus_tag="O3Y_00305"
                     /note="COG2022 Uncharacterized enzyme of thiazole
                     biosynthesis"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="YP_005331938.1"
                     /db_xref="GI:379739969"
                     /db_xref="GeneID:11913002"
                     /translation="MLKIADKTFQSRLFTGTGKFSNRHVMAEALAASGSELVTMALKR
                     IDLAQRDDDILAPLLSMQMNLLPNTSGAKNAADAVYAAELAREALATNWLKLEIHPDP
                     KYLMPDPIETLLAAEQLVKQGFIVLPYCHADPVLCKRLEEVGCAAVMPLGSPIGSNQG
                     LASKTFLEIIIDQAKVPVIVDAGIGSPSDAAQAMELGADAVLVNTAIAAAHDPIAMAK
                     AFKLAVEAGRMAYESGLPSRVKMATASSPLTGFLDFVS"
     misc_feature    64223..64963
                     /gene="thiG"
                     /locus_tag="O3Y_00305"
                     /note="Thiazole synthase (ThiG) is the tetrameric enzyme
                     that is involved in the formation of the thiazole moiety
                     of thiamin pyrophosphate, an essential ubiquitous cofactor
                     that plays an important role in carbohydrate and amino
                     acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728"
                     /db_xref="CDD:240079"
     misc_feature    order(64340..64342,64376..64378,64385..64387)
                     /gene="thiG"
                     /locus_tag="O3Y_00305"
                     /note="ThiS interaction site; other site"
                     /db_xref="CDD:240079"
     misc_feature    order(64502..64504,64508..64510,64760..64762)
                     /gene="thiG"
                     /locus_tag="O3Y_00305"
                     /note="putative active site [active]"
                     /db_xref="CDD:240079"
     misc_feature    order(64517..64519,64526..64528,64535..64543,64610..64612,
                     64616..64624,64631..64636,64688..64696,64703..64705,
                     64721..64723,64733..64735,64775..64783,64793..64795,
                     64802..64807,64832..64834,64847..64855,64862..64867,
                     64874..64876,64895..64897,64904..64909,64913..64927,
                     64931..64936,64940..64942,64946..64954,64958..64960)
                     /gene="thiG"
                     /locus_tag="O3Y_00305"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240079"
     gene            64987..66099
                     /gene="thiH"
                     /locus_tag="O3Y_00310"
                     /db_xref="GeneID:11913003"
     CDS             64987..66099
                     /gene="thiH"
                     /locus_tag="O3Y_00310"
                     /note="COG1060 Thiamine biosynthesis enzyme ThiH and
                     related uncharacterized enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiH"
                     /protein_id="YP_005331939.1"
                     /db_xref="GI:379739970"
                     /db_xref="GeneID:11913003"
                     /translation="MSFITHFQQLGWDDSRLSIYGKTARDVERALSSPKRTLDDFKAL
                     ISPSAEPYLETMAQMAYQATRQRFGNTMSMYIPLYLSNLCSNSCTYCGFSMDNRIKRK
                     TLNEVEIEREIAAIKRMGFDSVLLVTGEHETKVGIEYFRRALPIIKQAFHYVAMEVQP
                     LQQEEYAELIGLGLDAVMVYQETYHPSTYAQHHLRGKKTDFWYRLETPDRLARAGIDK
                     IGIGALIGLEDWRTDSIFVAAHLDYLERQYWKTRYSISFPRLRPCEGALQPKSVMTDR
                     QLVQLICAFRLFNSEVELSLSTRESPMFRDQVAKLGITSMSAASKTQPGGYSDPKVEL
                     EQFAVSDERSAAEVSSALMEQGLQVVWHDWHRAYSG"
     misc_feature    64987..66096
                     /gene="thiH"
                     /locus_tag="O3Y_00310"
                     /note="thiamine biosynthesis protein ThiH; Reviewed;
                     Region: thiH; PRK09240"
                     /db_xref="CDD:236425"
     misc_feature    65218..65796
                     /gene="thiH"
                     /locus_tag="O3Y_00310"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    order(65236..65238,65242..65244,65248..65250,65254..65262,
                     65365..65367,65371..65376,65455..65463,65524..65526,
                     65656..65658,65761..65766)
                     /gene="thiH"
                     /locus_tag="O3Y_00310"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     misc_feature    65746..66063
                     /gene="thiH"
                     /locus_tag="O3Y_00310"
                     /note="Biotin and Thiamin Synthesis associated domain;
                     Region: BATS; pfam06968"
                     /db_xref="CDD:253996"
     gene            complement(66324..68117)
                     /locus_tag="O3Y_00315"
                     /db_xref="GeneID:11913004"
     CDS             complement(66324..68117)
                     /locus_tag="O3Y_00315"
                     /note="COG0006 Xaa-Pro aminopeptidase"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P"
                     /protein_id="YP_005331940.1"
                     /db_xref="GI:379739971"
                     /db_xref="GeneID:11913004"
                     /translation="MSNLHSQRLADFRHWLHTQQLDAFIVPHEDEYLGEYVPEHNERL
                     HWLTGFTGSAGAAIVTLSGAAIFVDGRYTVQVRKQVSSELFEYCHLIEQPYLNWLVTQ
                     LPAGAKVGYDPRMHRGSWLTQAQKQLAGKINLCAVSSNPIDLLWQDRPVPAASEMRLI
                     PLDRVGQSSLEKRQSIASTLRDKNADCVVLTELDSIAWLLNIRGLDVSRLPVLLSHAI
                     VHNDSSVDFFFDPARLATDFDAHVAGTVRVHHPDQLEAQLHQLSGRRVMLDSATSNAW
                     FTLTLQNAGAELLNEADPCLLPKAAKNNTEIAGMRACHIRDGAAMVQFLAWLDNEVAN
                     GRLHNEAELADRLEAFRRQDPTLVDLSFDTISAAGTNAAMCHYNHQNQPEPGQLSMDS
                     LYLVDSGGQYLDGTTDITRTVAIGQVSAEMKQQFTLVLKGHIALARARFPKGTTGSQL
                     DVLARQHLWAQGYDYDHGTGHGVGHFLSVHEGPQRIAKVHNSVALRPGMVLSNEPGYY
                     RADAFGIRIENLELVTEFATQGDFSVLGFESLTRCPIDKRAIEVNLLTKPELHWLNQY
                     HQKVWDEVSPLIKEAHVREWLQQATSPLSHV"
     misc_feature    complement(67728..68096)
                     /locus_tag="O3Y_00315"
                     /note="Creatinase/Prolidase N-terminal domain; Region:
                     Creatinase_N; pfam01321"
                     /db_xref="CDD:250531"
     misc_feature    complement(66465..67607)
                     /locus_tag="O3Y_00315"
                     /note="Xaa-Pro aminopeptidase [Amino acid transport and
                     metabolism]; Region: PepP; COG0006"
                     /db_xref="CDD:223085"
     misc_feature    complement(66522..67193)
                     /locus_tag="O3Y_00315"
                     /note="X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also
                     known as X-Pro aminopeptidase, proline aminopeptidase,
                     aminopeptidase P, and aminoacylproline aminopeptidase.
                     Catalyses release of any N-terminal amino acid, including
                     proline, that is linked with proline; Region: APP;
                     cd01085"
                     /db_xref="CDD:238518"
     misc_feature    complement(order(66564..66566,66606..66608,66693..66695,
                     66894..66896,66927..66929,66990..66992))
                     /locus_tag="O3Y_00315"
                     /note="active site"
                     /db_xref="CDD:238518"
     gene            complement(68250..69191)
                     /locus_tag="O3Y_00320"
                     /db_xref="GeneID:11913005"
     CDS             complement(68250..69191)
                     /locus_tag="O3Y_00320"
                     /note="COG0583 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="YP_005331941.1"
                     /db_xref="GI:379739972"
                     /db_xref="GeneID:11913005"
                     /translation="MQIEKLARIDLNLLVCLKVLIEELSVTRAAARLCLSQSAVSKSL
                     AKLREQFDDPLFVRTSYGLNATPKALFLKPKLDVLVNQLELLTQPAHFSPQSSEYRFQ
                     IAAVESVYPLIMPYFLPTIFRHGPHLSISTHAWTEQTFRKLQVGELDFGLTGKDIDIN
                     DAKLTLLPPADICEQEIYRDNQRCVVRRGHPVLQYDWNLSSYLNLRHVQVRCDGNDRW
                     LLDYRLADLGYERDIAITVPDFNSAASLCTYTDFIFTAPSHFTHWVAKQMDLVELPLP
                     MEFPPMAYTLFWHRERENDPALRWLRELIQTNTLHLR"
     misc_feature    complement(68271..69176)
                     /locus_tag="O3Y_00320"
                     /note="DNA-binding transcriptional regulator YidZ;
                     Provisional; Region: PRK10216"
                     /db_xref="CDD:182312"
     misc_feature    complement(68985..69161)
                     /locus_tag="O3Y_00320"
                     /note="Bacterial regulatory helix-turn-helix protein, lysR
                     family; Region: HTH_1; pfam00126"
                     /db_xref="CDD:249610"
     misc_feature    complement(68274..68894)
                     /locus_tag="O3Y_00320"
                     /note="The C-terminal substrate binding domain of
                     LysR-type transcriptional regulators that involved in the
                     catabolism of nitroaromatic/naphthalene compounds and that
                     of related regulators; contains the type 2 periplasmic
                     binding fold; Region: PBP2_Nitroaromatics_like; cd08417"
                     /db_xref="CDD:176109"
     misc_feature    complement(order(68340..68342,68541..68543,68652..68654,
                     68853..68855,68865..68870,68874..68876))
                     /locus_tag="O3Y_00320"
                     /note="substrate binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:176109"
     misc_feature    complement(order(68445..68447,68454..68459,68466..68471,
                     68478..68492,68574..68576,68790..68792,68796..68810,
                     68814..68819,68826..68831,68835..68840,68847..68852,
                     68859..68864,68871..68873))
                     /locus_tag="O3Y_00320"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:176109"
     gene            69308..70498
                     /locus_tag="O3Y_00325"
                     /db_xref="GeneID:11913006"
     CDS             69308..70498
                     /locus_tag="O3Y_00325"
                     /note="COG0477 Permeases of the major facilitator
                     superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug resistance protein"
                     /protein_id="YP_005331942.1"
                     /db_xref="GI:379739973"
                     /db_xref="GeneID:11913006"
                     /translation="MPSQVSKQQMVLLTLLVLFSPLAIDIYLPALPQISQAFHVEHAL
                     AQDTITWFLFAMGVGQLFAGPLADKYGRRTVALGGISIYALSALLAWSAQSIEWMLMA
                     RLLQGLGACATSVAAFATVRDLFGPQRSGKMISYLNGAICFIPALAPILGSWLTQQFG
                     WRANFSFMTGFALLVGLAMALRLQESNPYMGSRPAVFKLSRYAAVLKAPTFLFHASLC
                     LLAMAVILAYVTSAPVILMERLQLSMNEFTFWFGVNAVINIIACMTAPKVMDKLGTRW
                     SLIIGITTLMIAGSLMLVLRNQASALAFMLPVFLSSIGFAWILGAAAGKALAPFGDKA
                     GTAAALLGLFQMSGSGLLVGTLQRIMPEPQLLIGLTMWLAAPALLILFSPLGFRWHAS
                     VSEC"
     misc_feature    69317..70456
                     /locus_tag="O3Y_00325"
                     /note="drug resistance transporter, Bcr/CflA subfamily;
                     Region: efflux_Bcr_CflA; TIGR00710"
                     /db_xref="CDD:233099"
     misc_feature    69335..70462
                     /locus_tag="O3Y_00325"
                     /note="The Major Facilitator Superfamily (MFS) is a large
                     and diverse group of secondary transporters that includes
                     uniporters, symporters, and antiporters. MFS proteins
                     facilitate the transport across cytoplasmic or internal
                     membranes of a variety of...; Region: MFS; cd06174"
                     /db_xref="CDD:119392"
     misc_feature    order(69377..69379,69386..69394,69398..69403,69452..69454,
                     69461..69466,69473..69475,69485..69490,69494..69499,
                     69635..69640,69647..69652,69659..69664,69671..69673,
                     69707..69712,69719..69724,69740..69742,69971..69973,
                     69980..69985,69992..69997,70004..70006,70046..70048,
                     70058..70060,70070..70072,70079..70081,70091..70093,
                     70235..70237,70244..70249,70256..70258,70268..70273,
                     70280..70282,70316..70321,70328..70333,70340..70345,
                     70352..70354)
                     /locus_tag="O3Y_00325"
                     /note="putative substrate translocation pore; other site"
                     /db_xref="CDD:119392"
     gene            70602..70886
                     /locus_tag="O3Y_00330"
                     /db_xref="GeneID:11913007"
     CDS             70602..70886
                     /locus_tag="O3Y_00330"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331943.1"
                     /db_xref="GI:379739974"
                     /db_xref="GeneID:11913007"
                     /translation="MSLTTYEMARILEQLDESPEKVMYGKLLNELGNQSSERIRSAAK
                     QVPLTVLRDLVYQFQQVIESRKGEQVETMAKELAKQGISAEELLNYLQKR"
     gene            complement(70975..71436)
                     /locus_tag="O3Y_00335"
                     /db_xref="GeneID:11913008"
     CDS             complement(70975..71436)
                     /locus_tag="O3Y_00335"
                     /note="COG1522 Transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator AsnC"
                     /protein_id="YP_005331944.1"
                     /db_xref="GI:379739975"
                     /db_xref="GeneID:11913008"
                     /translation="MQTTTKLDELDRAILKILMDDARTPYAEMAKQFNVSPATIHVRI
                     EKMKAADIIQGTEVVVNTKKLGYDVCCFIGINLNAARDYHSALAKLNALDEVVEAYYT
                     TGAYNIFVKLMCRSIEELQHVLIDKLQAIDEVQSTETLISLQNPISRNVNP"
     misc_feature    complement(70978..71436)
                     /locus_tag="O3Y_00335"
                     /note="DNA-binding transcriptional regulator AsnC;
                     Provisional; Region: PRK11179"
                     /db_xref="CDD:183019"
     misc_feature    complement(<71275..71415)
                     /locus_tag="O3Y_00335"
                     /note="Arsenical Resistance Operon Repressor and similar
                     prokaryotic, metal regulated homodimeric repressors. ARSR
                     subfamily of helix-turn-helix bacterial transcription
                     regulatory proteins (winged helix topology). Includes
                     several proteins that appear to...; Region: HTH_ARSR;
                     cd00090"
                     /db_xref="CDD:238042"
     misc_feature    complement(order(71290..71295,71299..71304,71311..71316,
                     71320..71331,71356..71358,71362..71367,71404..71412))
                     /locus_tag="O3Y_00335"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238042"
     misc_feature    complement(order(71353..71355,71365..71367))
                     /locus_tag="O3Y_00335"
                     /note="putative Zn2+ binding site [ion binding]; other
                     site"
                     /db_xref="CDD:238042"
     misc_feature    complement(71005..71220)
                     /locus_tag="O3Y_00335"
                     /note="AsnC family; Region: AsnC_trans_reg; pfam01037"
                     /db_xref="CDD:250314"
     gene            71524..73818
                     /locus_tag="O3Y_00340"
                     /db_xref="GeneID:11913009"
     CDS             71524..73818
                     /locus_tag="O3Y_00340"
                     /note="COG2199 FOG: GGDEF domain"
                     /codon_start=1
                     /transl_table=11
                     /product="sensory box/GGDEF family protein"
                     /protein_id="YP_005331945.1"
                     /db_xref="GI:379739976"
                     /db_xref="GeneID:11913009"
                     /translation="MSRLRHWYNKYALPLAVGLGCFWTANLVAQEPTLSSQPLDNLGT
                     SRVPWDSELAANAMLWIVALVAIMVLSILTVRQYHYIQRLRTNQKLLESIFDQSTHYI
                     GIFDLEGRIISCNGKLQGLLYRHGESLLRPIWQHKGWEDSAVEHIQNYFSESVPQTRQ
                     FNAEIWHPELGAIVLECQFKPLPTREESQILLEAQDITWRKITEDKLFQREASLRHYY
                     DQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGHHIRDFYQDEEVLTPRQMLLLP
                     SRHASSVWRREVCYRHHSGETVWVRENIRPLVETGTLLIVGEDITETRQLADQLAYQA
                     RYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLYLDLDQLKVLNDTAGHDAGDGAI
                     QFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSIIHALSEVAFVWEHI
                     RFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYRQDDEDLRRRQLE
                     MESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEYVSPGIFVPAS
                     ERYNLAHRLDRKIVEQTFNWLEARPQVLDKLGRVSINLSGNSIGNPDFVAFLLERLRD
                     SRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFGYLQKLPV
                     DIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQIGVDY
                     AQGYLFSRPQPIADWVAEQLKEKA"
     misc_feature    72187..72489
                     /locus_tag="O3Y_00340"
                     /note="PAS domain; Region: PAS_9; pfam13426"
                     /db_xref="CDD:257751"
     misc_feature    72187..72483
                     /locus_tag="O3Y_00340"
                     /note="PAS domain; PAS motifs appear in archaea,
                     eubacteria and eukarya. Probably the most surprising
                     identification of a PAS domain was that in EAG-like
                     K+-channels. PAS domains have been found to bind ligands,
                     and to act as sensors for light and oxygen in...; Region:
                     PAS; cd00130"
                     /db_xref="CDD:238075"
     misc_feature    order(72232..72234,72244..72246,72262..72264,72301..72312,
                     72391..72393,72406..72408)
                     /locus_tag="O3Y_00340"
                     /note="putative active site [active]"
                     /db_xref="CDD:238075"
     misc_feature    order(72292..72294,72304..72306,72328..72330,72337..72339,
                     72343..72345,72427..72429,72433..72435)
                     /locus_tag="O3Y_00340"
                     /note="heme pocket [chemical binding]; other site"
                     /db_xref="CDD:238075"
     misc_feature    72526..72999
                     /locus_tag="O3Y_00340"
                     /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
                     GGDEF; cd01949"
                     /db_xref="CDD:143635"
     misc_feature    order(72637..72639,72766..72768)
                     /locus_tag="O3Y_00340"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143635"
     misc_feature    order(72652..72654,72661..72666,72676..72678,72688..72690,
                     72754..72756,72760..72771)
                     /locus_tag="O3Y_00340"
                     /note="active site"
                     /db_xref="CDD:143635"
     misc_feature    order(72742..72744,72826..72828)
                     /locus_tag="O3Y_00340"
                     /note="I-site; other site"
                     /db_xref="CDD:143635"
     misc_feature    73060..73785
                     /locus_tag="O3Y_00340"
                     /note="EAL domain. This domain is found in diverse
                     bacterial signaling proteins. It is called EAL after its
                     conserved residues and is also known as domain of unknown
                     function 2 (DUF2).  The EAL domain has been shown to
                     stimulate degradation of a second...; Region: EAL;
                     cd01948"
                     /db_xref="CDD:238923"
     gene            73881..74663
                     /locus_tag="O3Y_00345"
                     /db_xref="GeneID:11913010"
     CDS             73881..74663
                     /locus_tag="O3Y_00345"
                     /note="COG0500 SAM-dependent methyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="YP_005331946.1"
                     /db_xref="GI:379739977"
                     /db_xref="GeneID:11913010"
                     /translation="MIQLICQAPQRAQELEQIAARWQLQASDDSPFALVLSEERLELR
                     KLDEPKLGAIYVDWVEGAVAHRRKFGGGKGQSIAKAAGLNKGVTPVVLDATAGLGRDA
                     FVLASLGCRVQMVERHPVVAALLEDGLQRAKQDDEIGAWVSERISLLHASSHDALQQL
                     ASDPNFTSPDVVYLDPMYPHPENKKKTALVKKEMRVFQSLVGADNDADALLEPALQLA
                     QKRVVVKRPDYAPWLGNRKPSMAMETKKNRFDVYVIAAMSGE"
     misc_feature    73917..74645
                     /locus_tag="O3Y_00345"
                     /note="Putative SAM-dependent methyltransferase; Region:
                     SAM_MT; pfam04445"
                     /db_xref="CDD:113224"
     misc_feature    74151..>74420
                     /locus_tag="O3Y_00345"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    order(74160..74180,74226..74231,74331..74339,74403..74405)
                     /locus_tag="O3Y_00345"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            74787..75170
                     /locus_tag="O3Y_00350"
                     /db_xref="GeneID:11913011"
     CDS             74787..75170
                     /locus_tag="O3Y_00350"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331947.1"
                     /db_xref="GI:379739978"
                     /db_xref="GeneID:11913011"
                     /translation="MAKRLCKLSRHEIATSLSEIERLVAEPQFLCRACARVAGDKKSL
                     CKPQAMSLPAPVATVVALPAHESGVVSLLPKASLKKQRKFHKKLEKVLKKQRKLMKKQ
                     QLLEGKVGQRHPTPVVERATAQSMH"
     gene            complement(75266..76153)
                     /locus_tag="O3Y_00355"
                     /db_xref="GeneID:11913012"
     CDS             complement(75266..76153)
                     /locus_tag="O3Y_00355"
                     /note="COG0697 Permeases of the drug/metabolite
                     transporter (DMT) superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="MadN protein"
                     /protein_id="YP_005331948.1"
                     /db_xref="GI:379739979"
                     /db_xref="GeneID:11913012"
                     /translation="MVYLSAVTLLWAFSFSLIGVYLAGQVDSWFAVWMRVALASLVFI
                     PFLRFKGVPRALIAKLMAIGGVQLGLMYCFYYQSFLLLSVPEVLLFTVFTPIYVTLIY
                     DFLKGRFSPWYLVTAFIAVLGAVFIKFAGINEHFVTGFLVVQGANLCFAIGQVGYKYV
                     MEQESTELPQHTVFGYFYLGALLVASVAFLLLGNPEKLPTTSVQWSILVYLGLIASGL
                     GYFAWNKGACMVNAGALAIMNNALVPAGLVVNILIWNREVDLVRLSLGGAIILGSLWI
                     NETWVKRRVERDYQRQGLL"
     misc_feature    complement(75332..76123)
                     /locus_tag="O3Y_00355"
                     /note="Carboxylate/Amino Acid/Amine Transporter; Region:
                     2A78; TIGR00950"
                     /db_xref="CDD:233205"
     gene            complement(76210..76635)
                     /locus_tag="O3Y_00360"
                     /db_xref="GeneID:11913013"
     CDS             complement(76210..76635)
                     /locus_tag="O3Y_00360"
                     /note="COG0589 Universal stress protein UspA and related
                     nucleotide-binding proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein A"
                     /protein_id="YP_005331949.1"
                     /db_xref="GI:379739980"
                     /db_xref="GeneID:11913013"
                     /translation="MSYQHLLVAVDLSEDSKLLVEKAVALAKPLNAEVSFIHIDVNYA
                     ELYTGLIDINLAETQHHAMEASQKQLQDLAQHANYPIKHTLVGSGDLTNELCETISEF
                     NVDLLVCGHHQDFWSKLLSSTRQLINSSPVDMLVIPLND"
     misc_feature    complement(76225..76623)
                     /locus_tag="O3Y_00360"
                     /note="Usp: Universal stress protein family. The universal
                     stress protein Usp is a small cytoplasmic bacterial
                     protein whose expression is enhanced when the cell is
                     exposed to stress agents. Usp enhances the rate of cell
                     survival during prolonged exposure to...; Region:
                     USP_Like; cd00293"
                     /db_xref="CDD:238182"
     misc_feature    complement(order(76267..76275,76300..76305,76306..76311,
                     76519..76521,76603..76611))
                     /locus_tag="O3Y_00360"
                     /note="Ligand Binding Site [chemical binding]; other site"
                     /db_xref="CDD:238182"
     gene            76800..77327
                     /locus_tag="O3Y_00365"
                     /db_xref="GeneID:11913014"
     CDS             76800..77327
                     /locus_tag="O3Y_00365"
                     /note="COG1528 Ferritin-like protein"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="YP_005331950.1"
                     /db_xref="GI:379739981"
                     /db_xref="GeneID:11913014"
                     /translation="MLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDGAAEFLR
                     AHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQKITQQIN
                     KLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAA
                     LAKKGSSSVMDAPAE"
     misc_feature    76806..77273
                     /locus_tag="O3Y_00365"
                     /note="nonheme-containing ferritins; Region:
                     Nonheme_Ferritin; cd01055"
                     /db_xref="CDD:153113"
     misc_feature    76818..77231
                     /locus_tag="O3Y_00365"
                     /note="Ferritin-like domain; Region: Ferritin; pfam00210"
                     /db_xref="CDD:249681"
     misc_feature    order(76848..76850,76944..76949,76956..76958,77079..77081,
                     77175..77177,77184..77189)
                     /locus_tag="O3Y_00365"
                     /note="ferroxidase diiron center [ion binding]; other
                     site"
                     /db_xref="CDD:153113"
     gene            77403..77726
                     /locus_tag="O3Y_00370"
                     /db_xref="GeneID:11913015"
     CDS             77403..77726
                     /locus_tag="O3Y_00370"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspB"
                     /protein_id="YP_005331951.1"
                     /db_xref="GI:379739982"
                     /db_xref="GeneID:11913015"
                     /translation="MISGDTILFALMLVTAINVARYVTALRSLIYIMREAHPLLYQQV
                     DGRGFFTTHGNVTKQVRLYHYLKSREYHHHHDPVFTGKCDRVRELFILSGSLLVLTTV
                     VAFML"
     misc_feature    77403..77723
                     /locus_tag="O3Y_00370"
                     /note="Universal stress protein B (UspB); Region: UspB;
                     pfam10625"
                     /db_xref="CDD:119145"
     gene            77868..79055
                     /locus_tag="O3Y_00375"
                     /db_xref="GeneID:11913016"
     CDS             77868..79055
                     /locus_tag="O3Y_00375"
                     /note="COG2081 Predicted flavoproteins"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331952.1"
                     /db_xref="GI:379739983"
                     /db_xref="GeneID:11913016"
                     /translation="MSKTVDVVIIGAGAAGLMCAAQAARRGRQVLLLDHAKKPGRKIL
                     ISGGGRCNFTNYDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQL
                     FCLDSAKEIVDMLLSECDQPNIEQRYQVEISAIAHTEQGFTLQTTIGEIECASLVVAT
                     GGLSMPKLGATPFGYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAPLSGVAIPVEMR
                     AECGKTFKEALLFTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHP
                     NQSLKNTLSKVLPKRLVEVLIERQLFADKPLKQYSPKELDAVQTRLEQWSIVPNGTEG
                     YRTAEVTLGGVDTDCLSSKTMECKTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAG
                     QWV"
     misc_feature    77871..79052
                     /locus_tag="O3Y_00375"
                     /note="Predicted flavoproteins [General function
                     prediction only]; Region: COG2081"
                     /db_xref="CDD:224992"
     misc_feature    77889..>78419
                     /locus_tag="O3Y_00375"
                     /note="Short-chain dehydrogenases/reductases (SDR);
                     Region: SDR; cl21454"
                     /db_xref="CDD:271874"
     misc_feature    <78291..79052
                     /locus_tag="O3Y_00375"
                     /note="Short-chain dehydrogenases/reductases (SDR);
                     Region: SDR; cl21454"
                     /db_xref="CDD:271874"
     gene            complement(79052..79963)
                     /locus_tag="O3Y_00380"
                     /db_xref="GeneID:11913017"
     CDS             complement(79052..79963)
                     /locus_tag="O3Y_00380"
                     /note="COG0697 Permeases of the drug/metabolite
                     transporter (DMT) superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="YP_005331953.1"
                     /db_xref="GI:379739984"
                     /db_xref="GeneID:11913017"
                     /translation="MNEKRALSLGLASVLLWSTVATAFKLTLAELNPLQMVTVASIVS
                     ALALLVICAAMDKLKLIVPTLLANPFYYLLLGLINPLAYYLILFKAYSLLPASQAQAI
                     NYSWAITLTLMAALFLGQRIRKQDWIACAMSYLGVVVIATKGDLLGLQFESPLGVGLA
                     LLSTLLWAGYWILNTKNKADPIVGVLLGFLLAIPFALALCWHENLNWQGITTQGWLAV
                     TYVGLFEMGITFVLWLSALKNTQNTARISNLIFASPFISLFLLATIIGEAIHPTTLIG
                     LVLIIAGLVVQQWQGRKAQPSEAKLNP"
     misc_feature    complement(79082..79963)
                     /locus_tag="O3Y_00380"
                     /note="Permeases of the drug/metabolite transporter (DMT)
                     superfamily [Carbohydrate transport and metabolism / Amino
                     acid transport and metabolism / General function
                     prediction only]; Region: RhaT; COG0697"
                     /db_xref="CDD:223769"
     misc_feature    complement(79538..79921)
                     /locus_tag="O3Y_00380"
                     /note="EamA-like transporter family; Region: EamA;
                     pfam00892"
                     /db_xref="CDD:250209"
     misc_feature    complement(79106..79471)
                     /locus_tag="O3Y_00380"
                     /note="EamA-like transporter family; Region: EamA;
                     pfam00892"
                     /db_xref="CDD:250209"
     gene            80086..81618
                     /locus_tag="O3Y_00385"
                     /db_xref="GeneID:11913018"
     CDS             80086..81618
                     /locus_tag="O3Y_00385"
                     /note="COG1322 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="YP_005331954.1"
                     /db_xref="GI:379739985"
                     /db_xref="GeneID:11913018"
                     /translation="MQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLEQQL
                     EQQSHWHAQQIQQLNEQLTTAQQELDELDALRDKNEFELKQSHGKLMAVLEKLRYFEA
                     VKQERQQYADELNQVRAAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLKQQF
                     EHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHE
                     LRNLQRLNEQMAKEAVNLTQALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSL
                     QNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAETDSERDSALREHLLALRN
                     HIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTT
                     LLVALRTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDKANQSYQG
                     AMNKLVTGRGNAIRQAESFKQLGVEIKRSIPQPLIERAQQAPDQENAPLVERHPIEDK
                     VN"
     misc_feature    80230..81609
                     /locus_tag="O3Y_00385"
                     /note="Predicted nuclease of restriction endonuclease-like
                     fold, RmuC family [General function prediction only];
                     Region: COG1322"
                     /db_xref="CDD:224241"
     misc_feature    80623..81534
                     /locus_tag="O3Y_00385"
                     /note="RmuC family; Region: RmuC; pfam02646"
                     /db_xref="CDD:251445"
     gene            81663..82445
                     /gene="ubiE"
                     /locus_tag="O3Y_00390"
                     /db_xref="GeneID:11913019"
     CDS             81663..82445
                     /gene="ubiE"
                     /locus_tag="O3Y_00390"
                     /EC_number="2.1.1.-"
                     /note="COG2226 Methylase involved in
                     ubiquinone/menaquinone biosynthesis"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone/menaquinone biosynthesis
                     methyltransferase"
                     /protein_id="YP_005331955.1"
                     /db_xref="GI:379739986"
                     /db_xref="GeneID:11913019"
                     /translation="MTDTNVLANSATDNQETTHFGFETVRKDEKVHKVAQVFHSVAAK
                     YDIMNDLMSGGIHRLWKRFTIDCSGARPGQRILDLGGGTGDLTAKFSRIVGEKGHVIL
                     ADINNSMLNVGRDKLRDSGVVGNVHYVQANAEELPFPDNYFDCITISFCLRNVTDKDK
                     ALRSMFRVLKPGGRLLVLEFSKPILEPLSKLYDTYSFHILPKMGQLIANDADSYRYLA
                     ESIRMHPDQETLKGMMEEAGFEQTTYYNLTGGIVALHRGYKF"
     misc_feature    81726..82442
                     /gene="ubiE"
                     /locus_tag="O3Y_00390"
                     /note="Methylase involved in ubiquinone/menaquinone
                     biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
                     /db_xref="CDD:225136"
     misc_feature    81885..82193
                     /gene="ubiE"
                     /locus_tag="O3Y_00390"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    order(81897..81917,81972..81977,82053..82061,82104..82106)
                     /gene="ubiE"
                     /locus_tag="O3Y_00390"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            82472..83077
                     /locus_tag="O3Y_00395"
                     /db_xref="GeneID:11913020"
     CDS             82472..83077
                     /locus_tag="O3Y_00395"
                     /note="COG3165 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331956.1"
                     /db_xref="GI:379739987"
                     /db_xref="GeneID:11913020"
                     /translation="MPLSPLLTAVIETTLNTLINDDPALGRKLLRLKGKVISLHLREL
                     NQSLTFVFSQRIDVMTGFEGQPDCYLALNLSILPQLREQANITQLIKQDKLELEGDIQ
                     LAQKFSELMTDCKPDVEEWLSRITGDVVAHSVVHGVKSIVGALKQQAHKHQNHLAQVL
                     TEEWRIAPPPLEIAYFCDQVDDVKSHAARLEARLNQLLEKA"
     misc_feature    82472..83074
                     /locus_tag="O3Y_00395"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG3165"
                     /db_xref="CDD:225706"
     gene            83074..84708
                     /gene="ubiB"
                     /locus_tag="O3Y_00400"
                     /db_xref="GeneID:11913021"
     CDS             83074..84708
                     /gene="ubiB"
                     /locus_tag="O3Y_00400"
                     /note="COG0661 Predicted unusual protein kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiB"
                     /protein_id="YP_005331957.1"
                     /db_xref="GI:379739988"
                     /db_xref="GeneID:11913021"
                     /translation="MKPAELKRLYRIVKVQLEYGLDELLPEHHLTRAPLLARKSLFWL
                     RNQHADKALGDRLRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDG
                     LQAKQLIEEELGAPLETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRP
                     QIDADIKLMYRVARIVAKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRN
                     FENSEELYVPEVLTDFCNETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFT
                     QVFRDSFFHADMHPGNVFVNPNHPENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNR
                     DYRRVAQLHVDSGWVPLDTNVDEFEVAIRMVCEPIFAKPLCEISFGHVLLNLFNTARR
                     FNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPFLEKWMANQVGPQAFLHALK
                     ERAPLWFEKMPELPELLYDSLKQGRNLNQRLDNLYQGYRQSKRQQGTGKFLFGVGATL
                     VVCSAIWISNQLEPLAIGSATIGVLCWLLSWRAYRQ"
     misc_feature    83089..84405
                     /gene="ubiB"
                     /locus_tag="O3Y_00400"
                     /note="2-polyprenylphenol 6-hydroxylase; Region: UbiB;
                     TIGR01982"
                     /db_xref="CDD:233667"
     misc_feature    83347..84102
                     /gene="ubiB"
                     /locus_tag="O3Y_00400"
                     /note="Ubiquinone biosynthetic protein UbiB; Region: UbiB;
                     cd13972"
                     /db_xref="CDD:270874"
     misc_feature    order(83497..83502,83506..83514,83518..83520,83548..83550,
                     83554..83556,83740..83742,83797..83808,83932..83934,
                     83944..83949,83953..83955,83995..84000)
                     /gene="ubiB"
                     /locus_tag="O3Y_00400"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270874"
     gene            84768..85016
                     /gene="tatA"
                     /locus_tag="O3Y_00405"
                     /db_xref="GeneID:11913022"
     CDS             84768..85016
                     /gene="tatA"
                     /locus_tag="O3Y_00405"
                     /note="COG1826 Sec-independent protein secretion pathway
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="twin arginine translocase protein A"
                     /protein_id="YP_005331958.1"
                     /db_xref="GI:379739989"
                     /db_xref="GeneID:11913022"
                     /translation="MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMS
                     EEESNSAANQKDADFETKNLEQAKTNASAEVKKDKEQA"
     misc_feature    84768..85013
                     /gene="tatA"
                     /locus_tag="O3Y_00405"
                     /note="twin arginine translocase protein A; Provisional;
                     Region: tatA; PRK04598"
                     /db_xref="CDD:179867"
     gene            85020..85421
                     /locus_tag="O3Y_00410"
                     /db_xref="GeneID:11913023"
     CDS             85020..85421
                     /locus_tag="O3Y_00410"
                     /note="COG1826 Sec-independent protein secretion pathway
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="sec-independent translocase"
                     /protein_id="YP_005331959.1"
                     /db_xref="GI:379739990"
                     /db_xref="GeneID:11913023"
                     /translation="MFDIGFWELVLIAIVALVVLGPERLPHAIRSVAKFVSAAKSMAN
                     SVKDELAHELKVQELQENLRKAEQMGMQNLSPELQKSVESLKQAAQEVQRPYAATPSS
                     EASSTSSNPSSATEPDVRLDSASQPAEKKAE"
     misc_feature    85020..85415
                     /locus_tag="O3Y_00410"
                     /note="sec-independent translocase; Provisional; Region:
                     tatB; PRK00404"
                     /db_xref="CDD:166942"
     misc_feature    85020..>85319
                     /locus_tag="O3Y_00410"
                     /note="sec-independent translocase; Provisional; Region:
                     PRK01770"
                     /db_xref="CDD:179334"
     gene            85510..86262
                     /locus_tag="O3Y_00415"
                     /db_xref="GeneID:11913024"
     CDS             85510..86262
                     /locus_tag="O3Y_00415"
                     /note="COG0805 Sec-independent protein secretion pathway
                     component TatC"
                     /codon_start=1
                     /transl_table=11
                     /product="sec-independent protein translocase protein
                     TatC"
                     /protein_id="YP_005331960.1"
                     /db_xref="GI:379739991"
                     /db_xref="GeneID:11913024"
                     /translation="MSSVEQTQPLISHLLELRNRLLKAVAAVVVIFIGLIYFSNEIYE
                     FVSKPLVERLPAGATMIATDVASPFFTPLKLTLIAAVFLAVPFILYQVWAFVAPGLYK
                     HERRLIFPLLVSSSLLFYCGVAFAYFVVFPLVFGFFTAISLGGVEFATDIASYLDFVL
                     ALFLAFGIAFEVPVAIILLCWTGATTPKSLSEKRPYIIVGAFVVGMLLTPPDMISQTL
                     LAIPMCLLFEVGLFFARFYTRDEADEGQEEEE"
     misc_feature    85516..86223
                     /locus_tag="O3Y_00415"
                     /note="Sec-independent protein translocase protein (TatC);
                     Region: TatC; cl00521"
                     /db_xref="CDD:260475"
     gene            86574..87575
                     /locus_tag="O3Y_00420"
                     /db_xref="GeneID:11913025"
     CDS             86574..87575
                     /locus_tag="O3Y_00420"
                     /note="COG1858 Cytochrome c peroxidase"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c551 peroxidase"
                     /protein_id="YP_005331961.1"
                     /db_xref="GI:379739992"
                     /db_xref="GeneID:11913025"
                     /translation="MKVVLTSLSLAISLSLAGYAFAASPRNEPVSPILPAQEIHIGKA
                     ELGKKLYFDPRLSKSGFISCNSCHNLSMGGSDNLKTSIGHNWQQGPINSPTVLNSSLN
                     IAQFWDGRAADLKEQAGGPIANPGEMAFTHTLAIDVLQSIPAYVSEFRLVFGKPTLDI
                     DQVTEAIAEFEKTLVTPYSRFDQWLMGDDSAITAQELAGYELFKNSGCVACHNGSALG
                     GNSFQKMGLIEPYQTNNKVEGLSAVTGADADRFKFKVPTLRNVALTYPYFHDGEAATL
                     KDAVDIMGRLQLGRKFTDDENGKIVAFLHTLTGEQPSFALPILPPSNDNTPKPQPFD"
     misc_feature    86694..87533
                     /locus_tag="O3Y_00420"
                     /note="tryptophan tryptophylquinone biosynthesis enzyme
                     MauG; Region: TTQ_mauG; TIGR03791"
                     /db_xref="CDD:163503"
     misc_feature    86700..87149
                     /locus_tag="O3Y_00420"
                     /note="Di-haem cytochrome c peroxidase; Region: CCP_MauG;
                     pfam03150"
                     /db_xref="CDD:251759"
     misc_feature    <87156..87494
                     /locus_tag="O3Y_00420"
                     /note="Cytochrome c; Region: Cytochrom_C; cl21467"
                     /db_xref="CDD:271887"
     gene            complement(87681..89036)
                     /locus_tag="O3Y_00425"
                     /db_xref="GeneID:11913026"
     CDS             complement(87681..89036)
                     /locus_tag="O3Y_00425"
                     /note="COG0534 Na+-driven multidrug efflux pump"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-damage-inducible protein F"
                     /protein_id="YP_005331962.1"
                     /db_xref="GI:379739993"
                     /db_xref="GeneID:11913026"
                     /translation="MSLILQTLKQPNVHRQVLAIALPMVLSNITVPLLGLVDAAVIGH
                     LEHAWYLGGVALGSTMISVTFWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIA
                     LGLAALFLLFHRPVAELIFHFSDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLG
                     TQNARAPMWMVIITNLTNIVLDLLLVLGLGLKVEGAAIASVIADYAGLLFGLLCVGRY
                     WRQHQLPAPFSFIPSLTKELSRLVALNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAA
                     NAVLMSFLMMISYGMDGFAYAMEAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSL
                     IFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMPLIAVWCFLLDGVFIGATKGKEMRN
                     SMAVSAVAFFAIYGFMTHYGNHALWLAMLSFMALRGFTLGATFYTQWRAGTFLPARFS
                     I"
     misc_feature    complement(87726..88997)
                     /locus_tag="O3Y_00425"
                     /note="DinF and similar proteins, a subfamily of the
                     multidrug and toxic compound extrusion (MATE)-like
                     proteins; Region: MATE_DinF_like; cd13136"
                     /db_xref="CDD:240541"
     misc_feature    complement(87693..88979)
                     /locus_tag="O3Y_00425"
                     /note="DNA-damage-inducible SOS response protein;
                     Provisional; Region: PRK10367"
                     /db_xref="CDD:182413"
     gene            complement(89116..89928)
                     /locus_tag="O3Y_00430"
                     /db_xref="GeneID:11913027"
     CDS             complement(89116..89928)
                     /locus_tag="O3Y_00430"
                     /note="COG3315 O-Methyltransferase involved in polyketide
                     biosynthesis"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase-like protein"
                     /protein_id="YP_005331963.1"
                     /db_xref="GI:379739994"
                     /db_xref="GeneID:11913027"
                     /translation="MRHSDSPTSDSYQVPANLVQPLWLRSRESLVDNGLVYDPIAANA
                     CRRCALAQDCLTGDIAQKQLLHVTLTQLCDQQVRHFLDTHPDGWIINVGAGLDTRFYR
                     VDNGRCHWIEWDITENLLWREKLFHSSERYQLVCGDVMQPQGLAELPIPEFAPVLLVC
                     EHALLDCDAQQVARFVRSIGLHFAKASACLVVAGDKTSSYLGQKLGCEAYAHGFTCAG
                     DAIINCLPWAKSVRTFSPLDRHCDRWKFWQRAIARSGIYKTRLTPVVVNLDW"
     misc_feature    complement(89119..89892)
                     /locus_tag="O3Y_00430"
                     /note="O-Methyltransferase involved in polyketide
                     biosynthesis [Secondary metabolites biosynthesis,
                     transport, and catabolism]; Region: COG3315"
                     /db_xref="CDD:225852"
     gene            complement(90013..90642)
                     /locus_tag="O3Y_00435"
                     /db_xref="GeneID:11913028"
     CDS             complement(90013..90642)
                     /locus_tag="O3Y_00435"
                     /EC_number="3.4.21.88"
                     /note="COG1974 SOS-response transcriptional repressors
                     (RecA-mediated autopeptidases)"
                     /codon_start=1
                     /transl_table=11
                     /product="LexA repressor"
                     /protein_id="YP_005331964.1"
                     /db_xref="GI:379739995"
                     /db_xref="GeneID:11913028"
                     /translation="MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGFRSANAAE
                     EHLKALARKQVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPILAQEHVE
                     AHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVARVEDDV
                     TVKRLERKGSKVFLHAENEEFAPIEVDLAAQSLTIEGIAVGVIRNSTWM"
     misc_feature    complement(90028..90636)
                     /locus_tag="O3Y_00435"
                     /note="LexA repressor; Validated; Region: PRK00215"
                     /db_xref="CDD:234688"
     misc_feature    complement(90448..90636)
                     /locus_tag="O3Y_00435"
                     /note="LexA DNA binding domain; Region: LexA_DNA_bind;
                     pfam01726"
                     /db_xref="CDD:201938"
     misc_feature    complement(90043..90291)
                     /locus_tag="O3Y_00435"
                     /note="Peptidase S24 LexA-like proteins are involved in
                     the SOS response leading to the repair of single-stranded
                     DNA within the bacterial cell. This family includes: the
                     lambda repressor CI/C2 family and related bacterial
                     prophage repressor proteins; LexA (EC...; Region:
                     S24_LexA-like; cd06529"
                     /db_xref="CDD:119397"
     misc_feature    complement(order(90154..90156,90265..90267))
                     /locus_tag="O3Y_00435"
                     /note="Catalytic site [active]"
                     /db_xref="CDD:119397"
     gene            90962..93388
                     /locus_tag="O3Y_00440"
                     /db_xref="GeneID:11913029"
     CDS             90962..93388
                     /locus_tag="O3Y_00440"
                     /EC_number="2.3.1.15"
                     /note="COG2937 Glycerol-3-phosphate O-acyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate acyltransferase"
                     /protein_id="YP_005331965.1"
                     /db_xref="GI:379739996"
                     /db_xref="GeneID:11913029"
                     /translation="MSSGHLLSRSLLKLPMSVLVKGTAIPSNPIQDLDIDTHKPVIYA
                     LPFRSNVDLLTLQTHAKEAGLPDPLEPLMLNGKAFQRYVFIASRPTLLSSDQHVPSDS
                     IALFSELLTEHKLDSELDVQVIPATVLWGRKPGKEGQERPYLQALNGPEKALAVLASG
                     RDCLVRFSPVVSMRYMADTHGTDASIAHKLARVARIHFSRQKLAASGPNLPQRAQLFA
                     RLMNSPAIEKAIADEAKSKQIPLEKARKEAHDILDEIAADFSYSLVKKGDRILGWLWN
                     RIYQGLNINNAATVRRLAQDGHEIVYVPCHRSHMDYLLLSYVLYHEGMVPPHIAAGIN
                     LNFFPAGPIFRRGGAFFIRRSFKGAPLYSTIFREYLAELFAKGYSVEYFSEGGRSRTG
                     RLLPAKTGMLAMTIQAMLRGLNRPVTLVPVYIGYEHVMEVGTYAKELRGKRKEKENAG
                     LVLRTLRKLRNFGQGYVNFGEPIPLNQFLNETVPQWTQDIDPMGESKPQWMTPTVNKL
                     ANRMMTHINDAAAVNAMTLCATALLASRQRALARDNLIKQVDCYLSLLRNVPYSATST
                     LPSESAEKLVEHAESLDKFVVETDTMGDIISLDRNQSILMTYYRNNIIHLLALPSLIA
                     QLLIRQQSVSLEKVQATVAQIYPFLKQELFLRFEAEELNDLVLRYVAELARQGLVTVE
                     GKTVTLNQAQTQVLMLLGRIISETLQRYAIALNLLVSCPHLGKAELEEKSQEVAQRLG
                     RLHGINAPEFFDKGVFASLFVTLQEQGYLDDQGRCVLETAKPLSRQLYALIYPEVRMT
                     IQESLCQVDA"
     misc_feature    90962..93385
                     /locus_tag="O3Y_00440"
                     /note="Glycerol-3-phosphate O-acyltransferase [Lipid
                     metabolism]; Region: PlsB; COG2937"
                     /db_xref="CDD:225488"
     misc_feature    91796..92401
                     /locus_tag="O3Y_00440"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: GPAT-like; Region:
                     LPLAT_DHAPAT-like; cd07993"
                     /db_xref="CDD:153255"
     misc_feature    order(91877..91879,91886..91888,91892..91894,91955..91966,
                     92117..92125)
                     /locus_tag="O3Y_00440"
                     /note="putative acyl-acceptor binding pocket; other site"
                     /db_xref="CDD:153255"
     gene            complement(93464..94318)
                     /gene="ubiA"
                     /locus_tag="O3Y_00445"
                     /db_xref="GeneID:11913030"
     CDS             complement(93464..94318)
                     /gene="ubiA"
                     /locus_tag="O3Y_00445"
                     /note="COG0382 4-hydroxybenzoate polyprenyltransferase and
                     related prenyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="YP_005331966.1"
                     /db_xref="GI:379739997"
                     /db_xref="GeneID:11913030"
                     /translation="MTAVKARAYWQLMRMDRPIGSLLLLWPTLWALLLAAQGLPDLRV
                     LVVFVLGVFLMRSAGCVINDYADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVS
                     SFLLVLTMNTLTIQLSFIGILLAFVYPFMKRFTHLPQLVLGLAFSWSIPMAWAAQANT
                     LTPQVWVLFLINALWTIAYDTQYAMVDRDDDVKIGIKSTAILFGRWDKRIIGLLQLAT
                     LSLLVALGQGLALGTSYYWGLLIAAGLFAYQQHLIRYRERMPCFQAFLNNNYVGMAIT
                     AGILLSVW"
     misc_feature    complement(93473..94282)
                     /gene="ubiA"
                     /locus_tag="O3Y_00445"
                     /note="4-Hydroxybenzoate polyprenyltransferase; Region:
                     PT_UbiA_COQ2; cd13959"
                     /db_xref="CDD:260122"
     misc_feature    complement(order(93746..93748,93758..93760,94106..94108,
                     94118..94120))
                     /gene="ubiA"
                     /locus_tag="O3Y_00445"
                     /note="putative active site [active]"
                     /db_xref="CDD:260122"
     gene            complement(94319..94870)
                     /locus_tag="O3Y_00450"
                     /db_xref="GeneID:11913031"
     CDS             complement(94319..94870)
                     /locus_tag="O3Y_00450"
                     /note="COG3161 4-hydroxybenzoate synthetase (chorismate
                     lyase)"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate--pyruvate lyase"
                     /protein_id="YP_005331967.1"
                     /db_xref="GI:379739998"
                     /db_xref="GeneID:11913031"
                     /translation="MNNSMNQLTSLYLAALNRVTWQQPDDIEFPAPLAQQWLLEQGSL
                     SRRMATQCEHLTVDLLSNQIMLADTLSYDETQLLASEEYLLRQVIIYGDQQPWVFGHT
                     LIPRSSMHNQPFDFTQQGKIPLGLTVFSADNVKRDALQVGWVETELGRLLARRSRLWM
                     NNKPMLVTELFLATSPIYSKERV"
     misc_feature    complement(94322..94828)
                     /locus_tag="O3Y_00450"
                     /note="Chorismate lyase; Region: Chor_lyase; pfam04345"
                     /db_xref="CDD:113128"
     gene            95062..95472
                     /locus_tag="O3Y_00455"
                     /db_xref="GeneID:11913032"
     CDS             95062..95472
                     /locus_tag="O3Y_00455"
                     /note="COG1580 Flagellar basal body-associated protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein
                     FliL-like protein"
                     /protein_id="YP_005331968.1"
                     /db_xref="GI:379739999"
                     /db_xref="GeneID:11913032"
                     /translation="MLKRYVVQIMLALSFIVPFHSHAEEKSAVPQLAYFTLEPDLTTN
                     FFTKGNKLGYIQVRIDIMVANAADLPVVEQHQPLIRDAVVELLGKQTEDTIKSLAGRE
                     DLRKSLVNRLNNILLPEVGRTVIADLLFTKYIYQ"
     misc_feature    95065..95469
                     /locus_tag="O3Y_00455"
                     /note="flagellar basal body-associated protein FliL-like
                     protein; Validated; Region: PRK05697"
                     /db_xref="CDD:235565"
     gene            complement(95592..97571)
                     /locus_tag="O3Y_00460"
                     /db_xref="GeneID:11913033"
     CDS             complement(95592..97571)
                     /locus_tag="O3Y_00460"
                     /note="COG2202 FOG: PAS/PAC domain"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="YP_005331969.1"
                     /db_xref="GI:379740000"
                     /db_xref="GeneID:11913033"
                     /translation="MGLLARLFSTAPHHPTQPAEVKPDPLMQSPVTTETTALQPEPQV
                     APYQTDLALTTPESDLTPQVNQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSA
                     EAMVGADFANLWRTHQQPSVQRLLQDAKKGHPVSAELQLSRSQEAIWIKADLYPIKAI
                     NGQLQNVVVLLQDITAAKLEKIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVG
                     YQLDEIQGRHHSMFVDEQYKQSQEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASY
                     NPIMDSEGKPYKVVKYATNVTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELG
                     EVISQFIVTLRQIITDINSVAATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEE
                     LNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTMASINESAQKIADIIGVID
                     GIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSANAAKDIKALISDSVSK
                     ISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQATGINEVNQAVNQMDEMTQ
                     QNAALVEEAAAASESLLAQAEQLYDHVAMFRLPDQDTSAPSLLKAVNKRPQSAPVTRH
                     PASHIAKTPAKITAKASSRAQPVMQVAHDEEWESF"
     misc_feature    complement(97044..97349)
                     /locus_tag="O3Y_00460"
                     /note="PAS domain; Region: PAS_9; pfam13426"
                     /db_xref="CDD:257751"
     misc_feature    complement(97050..97325)
                     /locus_tag="O3Y_00460"
                     /note="PAS domain; PAS motifs appear in archaea,
                     eubacteria and eukarya. Probably the most surprising
                     identification of a PAS domain was that in EAG-like
                     K+-channels. PAS domains have been found to bind ligands,
                     and to act as sensors for light and oxygen in...; Region:
                     PAS; cd00130"
                     /db_xref="CDD:238075"
     misc_feature    complement(order(97137..97139,97149..97151,97224..97235,
                     97272..97274,97290..97292,97302..97304))
                     /locus_tag="O3Y_00460"
                     /note="putative active site [active]"
                     /db_xref="CDD:238075"
     misc_feature    complement(order(97110..97112,97116..97118,97194..97199,
                     97206..97208,97230..97232,97242..97244))
                     /locus_tag="O3Y_00460"
                     /note="heme pocket [chemical binding]; other site"
                     /db_xref="CDD:238075"
     misc_feature    complement(96702..96995)
                     /locus_tag="O3Y_00460"
                     /note="PAS domain; PAS motifs appear in archaea,
                     eubacteria and eukarya. Probably the most surprising
                     identification of a PAS domain was that in EAG-like
                     K+-channels. PAS domains have been found to bind ligands,
                     and to act as sensors for light and oxygen in...; Region:
                     PAS; cd00130"
                     /db_xref="CDD:238075"
     misc_feature    complement(96678..96986)
                     /locus_tag="O3Y_00460"
                     /note="PAS domain; Region: PAS_9; pfam13426"
                     /db_xref="CDD:257751"
     misc_feature    complement(order(96771..96773,96783..96785,96867..96878,
                     96915..96917,96933..96935,96945..96947))
                     /locus_tag="O3Y_00460"
                     /note="putative active site [active]"
                     /db_xref="CDD:238075"
     misc_feature    complement(order(96744..96746,96750..96752,96831..96836,
                     96843..96845,96873..96875,96885..96887))
                     /locus_tag="O3Y_00460"
                     /note="heme pocket [chemical binding]; other site"
                     /db_xref="CDD:238075"
     misc_feature    complement(96525..96665)
                     /locus_tag="O3Y_00460"
                     /note="HAMP (Histidine kinases, Adenylyl cyclases, Methyl
                     binding proteins, Phosphatases) domain; Region: HAMP;
                     smart00304"
                     /db_xref="CDD:197640"
     misc_feature    complement(95781..96524)
                     /locus_tag="O3Y_00460"
                     /note="Methyl-accepting chemotaxis-like domains
                     (chemotaxis sensory transducer); Region: MA; smart00283"
                     /db_xref="CDD:214599"
     misc_feature    complement(95868..96443)
                     /locus_tag="O3Y_00460"
                     /note="Methyl-accepting chemotaxis protein (MCP),
                     signaling domain; Region: MCP_signal; cd11386"
                     /db_xref="CDD:206779"
     misc_feature    complement(order(95868..95873,95880..95882,95889..95894,
                     95898..95903,95910..95915,95919..95924,95931..95933,
                     95940..95945,95952..95954,95961..95966,95973..95978,
                     95982..95987,95994..95996,96003..96008,96015..96017,
                     96024..96029,96066..96071,96078..96083,96087..96092,
                     96099..96104,96111..96113,96120..96125,96132..96134,
                     96141..96143,96153..96155,96174..96176,96183..96185,
                     96195..96197,96204..96209,96216..96218,96225..96227,
                     96234..96239,96246..96251,96258..96260,96267..96272,
                     96276..96278,96288..96293,96297..96302,96309..96311,
                     96318..96323,96330..96335,96342..96344,96351..96356,
                     96363..96365,96372..96377,96381..96386,96393..96395,
                     96402..96407,96414..96419))
                     /locus_tag="O3Y_00460"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:206779"
     misc_feature    complement(96108..96209)
                     /locus_tag="O3Y_00460"
                     /note="putative CheW interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:206779"
     gene            complement(97946..98779)
                     /locus_tag="O3Y_00465"
                     /db_xref="GeneID:11913034"
     CDS             complement(97946..98779)
                     /locus_tag="O3Y_00465"
                     /note="COG0705 Uncharacterized membrane protein (homolog
                     of Drosophila rhomboid)"
                     /codon_start=1
                     /transl_table=11
                     /product="GlpG protein"
                     /protein_id="YP_005331970.1"
                     /db_xref="GI:379740001"
                     /db_xref="GeneID:11913034"
                     /translation="MHLLTTFNNPRAAQAFIDYMAAHHIEIQMMPDAGGQFTLWVIQD
                     QHIETAQAELALFLENPYAEKYQAASWEVADQKRPQFHYASPNLLSLIKAKAGVFTLF
                     IMALCIIIFTLQTFGAGDEVFNALHFPALAGQQWQIWRWVSHALLHFSVMHIAFNLLW
                     WWQFGGDLEQRLGSVRLIKLFVVSAIISGAGQYWVEGANFGGLSGVVYALAGYLWILG
                     QRAPQLGLSIPRSLMGFMLIWLVLGYVQPFMAIANTAHLAGLISGVVLAWFDSQRDQQ
                     A"
     misc_feature    complement(98474..98779)
                     /locus_tag="O3Y_00465"
                     /note="Protein of unknown function (DUF3582); Region:
                     DUF3582; pfam12122"
                     /db_xref="CDD:256859"
     misc_feature    complement(97961..98773)
                     /locus_tag="O3Y_00465"
                     /note="rhomboid family protease GlpG; Region: rhombo_GlpG;
                     TIGR04239"
                     /db_xref="CDD:234518"
     misc_feature    complement(97949..98497)
                     /locus_tag="O3Y_00465"
                     /note="Membrane associated serine protease [Amino acid
                     transport and metabolism]; Region: COG0705"
                     /db_xref="CDD:223777"
     gene            complement(98786..99106)
                     /gene="glpE"
                     /locus_tag="O3Y_00470"
                     /db_xref="GeneID:11913035"
     CDS             complement(98786..99106)
                     /gene="glpE"
                     /locus_tag="O3Y_00470"
                     /EC_number="2.8.1.1"
                     /note="COG0607 Rhodanese-related sulfurtransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase"
                     /protein_id="YP_005331971.1"
                     /db_xref="GI:379740002"
                     /db_xref="GeneID:11913035"
                     /translation="MDHFLHIDVNAAQAMMEQKQAHLVDIRDPQSFQLAHAKNAYHLT
                     NQSMVQFMEQAEFDQPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRANLP
                     IEAS"
     misc_feature    complement(98813..99091)
                     /gene="glpE"
                     /locus_tag="O3Y_00470"
                     /note="GlpE sulfurtransferase (ST) and homologs are
                     members of the Rhodanese Homology Domain superfamily.
                     Unlike other rhodanese sulfurtransferases, GlpE is a
                     single domain protein but indications are that it
                     functions as a dimer. The active site contains a...;
                     Region: GlpE_ST; cd01444"
                     /db_xref="CDD:238721"
     misc_feature    complement(98912..98914)
                     /gene="glpE"
                     /locus_tag="O3Y_00470"
                     /note="active site residue [active]"
                     /db_xref="CDD:238721"
     gene            complement(99867..100634)
                     /locus_tag="O3Y_00475"
                     /db_xref="GeneID:11913036"
     CDS             complement(99867..100634)
                     /locus_tag="O3Y_00475"
                     /note="COG0084 Mg-dependent DNase"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD DNase family protein"
                     /protein_id="YP_005331972.1"
                     /db_xref="GI:379740003"
                     /db_xref="GeneID:11913036"
                     /translation="MIDTHAHVYASEFDHDRDEVIARARQVGIEKILMPNIDLNSIAP
                     MLATEKAYPDLCHSMMGLHPCYVDANVKQTLATIYEWFSRHTFIAVGEIGIDLYWDKT
                     FKAEQEMAFLTQLNWAKELDLPVVIHTRDSLNETLALLKQAQDGRLRGVFHCFGGSVD
                     EAKAINDLGFHLGIGGVSTFKNSGMDQVIPQLDLNYVILETDCPYLAPVPHRGKRNEP
                     MLTHLISEKVAQLRSLPLGEVIKITNNNSKALFGLDK"
     misc_feature    complement(99879..100634)
                     /locus_tag="O3Y_00475"
                     /note="TatD like proteins;  E.coli TatD is a cytoplasmic
                     protein, shown to have magnesium dependent DNase activity;
                     Region: TatD_DNAse; cd01310"
                     /db_xref="CDD:238635"
     misc_feature    complement(order(100029..100031,100176..100178,
                     100251..100253,100614..100616,100620..100622))
                     /locus_tag="O3Y_00475"
                     /note="active site"
                     /db_xref="CDD:238635"
     gene            100811..101854
                     /locus_tag="O3Y_00480"
                     /db_xref="GeneID:11913037"
     CDS             100811..101854
                     /locus_tag="O3Y_00480"
                     /EC_number="4.2.1.24"
                     /note="COG0113 Delta-aminolevulinic acid dehydratase"
                     /codon_start=1
                     /transl_table=11
                     /product="delta-aminolevulinic acid dehydratase"
                     /protein_id="YP_005331973.1"
                     /db_xref="GI:379740004"
                     /db_xref="GeneID:11913037"
                     /translation="MSVSIQGQFPGRRLRRLRKHDFSRRLVAENQLSVNDLIYPMFIL
                     MGKDRREKVDSMPGVERLSIDLMLEEAQYLANLGVPAIALFPVVNQDAKSLCAAEAYN
                     PEGLVQRAVRALKEHVPQMGVITDVALDPFTTHGQDGIIDEQGYVLNDETTEVLVKQA
                     LSHAQAGADVVAPSDMMDGRIGRIRQALEEAGYIHTQIMAYSAKYASNYYGPFRDAVG
                     SSANLKGGNKKNYQMDPANSDEALHEVAMDINEGADMVMVKPGMPYLDVVRRVKTELQ
                     VPTFAYQVSGEYAMHKAAIMNGWLKERETVFESLLCFKRAGADGILTYFAKEVAEWLA
                     EDSAKAAQFLPKK"
     misc_feature    100844..101812
                     /locus_tag="O3Y_00480"
                     /note="Porphobilinogen synthase (PBGS), which is also
                     called delta-aminolevulinic acid dehydratase (ALAD),
                     catalyzes the condensation of two 5-aminolevulinic acid
                     (ALA) molecules to form the pyrrole porphobilinogen (PBG),
                     which is the second step in the...; Region:
                     ALAD_PBGS_aspartate_rich; cd04823"
                     /db_xref="CDD:240127"
     misc_feature    order(100847..100855,100862..100867,100892..100900,
                     100970..100972,100979..100981,101255..101260,
                     101339..101344,101429..101437,101498..101503,
                     101510..101521,101528..101530,101537..101542,
                     101594..101608,101678..101680,101723..101725,
                     101732..101734,101744..101746,101753..101755)
                     /locus_tag="O3Y_00480"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:240127"
     misc_feature    order(100847..100849,101342..101344,101540..101542,
                     101552..101554)
                     /locus_tag="O3Y_00480"
                     /note="allosteric magnesium binding site [ion binding];
                     other site"
                     /db_xref="CDD:240127"
     misc_feature    order(101186..101188,101192..101194,101198..101200,
                     101222..101224,101330..101332,101420..101422,
                     101438..101440,101447..101452,101465..101467,
                     101492..101494,101504..101506,101585..101587,
                     101654..101656,101663..101665,101780..101782)
                     /locus_tag="O3Y_00480"
                     /note="active site"
                     /db_xref="CDD:240127"
     misc_feature    order(101198..101200,101222..101224,101333..101335)
                     /locus_tag="O3Y_00480"
                     /note="aspartate-rich active site metal binding site;
                     other site"
                     /db_xref="CDD:240127"
     misc_feature    order(101420..101422,101585..101587)
                     /locus_tag="O3Y_00480"
                     /note="Schiff base residues; other site"
                     /db_xref="CDD:240127"
     gene            101961..102389
                     /locus_tag="O3Y_00485"
                     /db_xref="GeneID:11913038"
     CDS             101961..102389
                     /locus_tag="O3Y_00485"
                     /note="COG0454 Histone acetyltransferase HPA2 and related
                     acetyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331974.1"
                     /db_xref="GI:379740005"
                     /db_xref="GeneID:11913038"
                     /translation="MLIREGSLSEIVQIVEKIHEFAQKETEQSLQARLNDKTCLVLVA
                     ENESELLGFKMGYELDNKTFYSWFGGVTPAARGHGVAQRLLDVQEKWALEQGYQRIKV
                     KSRNQFPAMLRLLIKNGYLIEDYEKKESIIESRIHFVKVL"
     misc_feature    102081..102260
                     /locus_tag="O3Y_00485"
                     /note="N-Acyltransferase superfamily: Various enzymes that
                     characteristically catalyze the transfer of an acyl group
                     to a substrate; Region: NAT_SF; cd04301"
                     /db_xref="CDD:173926"
     misc_feature    order(102168..102173,102201..102206)
                     /locus_tag="O3Y_00485"
                     /note="Coenzyme A binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:173926"
     gene            103098..105902
                     /locus_tag="O3Y_00490"
                     /db_xref="GeneID:11913039"
     CDS             103098..105902
                     /locus_tag="O3Y_00490"
                     /note="COG0258 5'-3' exonuclease (including N-terminal
                     domain of PolI)"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="YP_005331975.1"
                     /db_xref="GI:379740006"
                     /db_xref="GeneID:11913039"
                     /translation="MAHIPDNPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVN
                     MIRSMMRQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAM
                     GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVL
                     DREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANL
                     DKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALM
                     SLYGKLAFKSWLTELLDGGTGIVTADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQ
                     YQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAH
                     DYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQ
                     SYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDAD
                     VTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIAL
                     RLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL
                     DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQ
                     NIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHA
                     ATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFE
                     RYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGT
                     AADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA
                     ELAVPLVAEAGHGDNWEQAH"
     misc_feature    103116..105899
                     /locus_tag="O3Y_00490"
                     /note="DNA polymerase I; Provisional; Region: PRK05755"
                     /db_xref="CDD:235591"
     misc_feature    103122..103622
                     /locus_tag="O3Y_00490"
                     /note="PIN domain of the 5'-3' exonuclease of Taq DNA
                     polymerase I and homologs; Region: PIN_53EXO; cd09859"
                     /db_xref="CDD:189029"
     misc_feature    order(103134..103136,103284..103286,103434..103436,
                     103440..103445,103509..103511,103515..103517)
                     /locus_tag="O3Y_00490"
                     /note="active site"
                     /db_xref="CDD:189029"
     misc_feature    order(103134..103136,103440..103442,103509..103511)
                     /locus_tag="O3Y_00490"
                     /note="metal binding site 1 [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:189029"
     misc_feature    103302..103340
                     /locus_tag="O3Y_00490"
                     /note="putative 5' ssDNA interaction site; other site"
                     /db_xref="CDD:189029"
     misc_feature    order(103434..103436,103443..103445)
                     /locus_tag="O3Y_00490"
                     /note="metal binding site 3; metal-binding site"
                     /db_xref="CDD:189029"
     misc_feature    order(103509..103511,103515..103517)
                     /locus_tag="O3Y_00490"
                     /note="metal binding site 2 [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:189029"
     misc_feature    103614..103853
                     /locus_tag="O3Y_00490"
                     /note="H3TH domain of the 5'-3' exonuclease of Taq DNA
                     polymerase I and homologs; Region: H3TH_53EXO; cd09898"
                     /db_xref="CDD:188618"
     misc_feature    order(103644..103667,103671..103700,103704..103715)
                     /locus_tag="O3Y_00490"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:188618"
     misc_feature    order(103650..103652,103659..103661)
                     /locus_tag="O3Y_00490"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:188618"
     misc_feature    104145..104729
                     /locus_tag="O3Y_00490"
                     /note="DEDDy 3'-5' exonuclease domain of Escherichia coli
                     DNA polymerase I and similar bacterial family-A DNA
                     polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139"
                     /db_xref="CDD:176651"
     misc_feature    order(104175..104186,104193..104195,104367..104372,
                     104376..104384,104481..104486,104529..104534,
                     104601..104603,104613..104615)
                     /locus_tag="O3Y_00490"
                     /note="active site"
                     /db_xref="CDD:176651"
     misc_feature    order(104175..104177,104181..104183,104382..104384,
                     104601..104603,104613..104615)
                     /locus_tag="O3Y_00490"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176651"
     misc_feature    order(104178..104186,104193..104195,104367..104372,
                     104376..104381,104481..104486,104529..104534,
                     104601..104603,104613..104615)
                     /locus_tag="O3Y_00490"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:176651"
     misc_feature    104766..105887
                     /locus_tag="O3Y_00490"
                     /note="Polymerase I functions primarily to fill DNA gaps
                     that arise during DNA repair, recombination and
                     replication; Region: DNA_pol_A_pol_I_C; cd08637"
                     /db_xref="CDD:176474"
     misc_feature    order(105003..105005,105015..105017,105024..105029,
                     105102..105110,105114..105116,105120..105131,
                     105225..105230,105312..105314,105372..105374,
                     105384..105386,105636..105638,105657..105659,
                     105753..105761)
                     /locus_tag="O3Y_00490"
                     /note="active site"
                     /db_xref="CDD:176474"
     misc_feature    order(105003..105005,105015..105017,105024..105029,
                     105102..105110,105114..105116,105120..105131,
                     105408..105410,105633..105638,105645..105647,
                     105657..105659,105753..105761)
                     /locus_tag="O3Y_00490"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176474"
     misc_feature    order(105225..105230,105234..105236,105312..105314,
                     105372..105374,105384..105386,105759..105761)
                     /locus_tag="O3Y_00490"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176474"
     gene            complement(106649..107311)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /db_xref="GeneID:11913040"
     CDS             complement(106649..107311)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="COG0218 Predicted GTPase"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein YsxC"
                     /protein_id="YP_005331976.1"
                     /db_xref="GI:379740007"
                     /db_xref="GeneID:11913040"
                     /translation="MSVKIHYQNTHFITSAPDIRHLPEDEGIEIAFAGRSNAGKSSSL
                     NRLTNQKNLAKTSKTPGRTQLINLFKVADGCHIVDLPGYGFAQVPLEMKLKWQRALGE
                     YLQKRQSLKGLVVLMDIRHPMKDLDQQLIIWAVECGIPVQVMLTKADKLKSGARKAQV
                     LKVREEAKTFGGDVAVDAFSSLSGIGVDTLRAKLDEWYAPMLAALAEQEEGEQPESST
                     DQ"
     misc_feature    complement(106706..107302)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="Predicted GTPase [General function prediction
                     only]; Region: COG0218"
                     /db_xref="CDD:223296"
     misc_feature    complement(106721..107227)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="YihA (EngB) GTPase family; Region: YihA_EngB;
                     cd01876"
                     /db_xref="CDD:206665"
     misc_feature    complement(107189..107212)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="G1 box; other site"
                     /db_xref="CDD:206665"
     misc_feature    complement(order(106769..106774,106865..106867,
                     106871..106873,107075..107077,107123..107131,
                     107138..107146,107186..107206))
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206665"
     misc_feature    complement(107114..107134)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206665"
     misc_feature    complement(107123..107125)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="G2 box; other site"
                     /db_xref="CDD:206665"
     misc_feature    complement(107066..107077)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="G3 box; other site"
                     /db_xref="CDD:206665"
     misc_feature    complement(order(106982..106987,106994..107038,
                     107057..107068))
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206665"
     misc_feature    complement(106865..106876)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="G4 box; other site"
                     /db_xref="CDD:206665"
     misc_feature    complement(106766..106774)
                     /gene="engB"
                     /locus_tag="O3Y_00495"
                     /note="G5 box; other site"
                     /db_xref="CDD:206665"
     gene            107463..108080
                     /locus_tag="O3Y_00500"
                     /db_xref="GeneID:11913041"
     CDS             107463..108080
                     /locus_tag="O3Y_00500"
                     /note="COG2863 Cytochrome c553"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c4"
                     /protein_id="YP_005331977.1"
                     /db_xref="GI:379740008"
                     /db_xref="GeneID:11913041"
                     /translation="MKKLALILSVLASCSVWAQGSIEAGKAKSLTCAACHGADGNSPL
                     TIYPKLAGQHEKYLEKQLKELKLGASSGGKQGRYDPVMSAMAMPLSDEDIADLAAYYA
                     SMPISGNTTPEDVVAQGKVLYTAGDASRGLTACIACHGPRGNGTELSGFPKISGQHAD
                     YIKAQLEKFRSGTRANDMNEMMRDVAHKLTDADIDILSKYVGGLH"
     misc_feature    107463..107837
                     /locus_tag="O3Y_00500"
                     /note="Cytochrome c553 [Energy production and conversion];
                     Region: COG2863"
                     /db_xref="CDD:225418"
     misc_feature    107835..>108062
                     /locus_tag="O3Y_00500"
                     /note="Cytochrome c; Region: Cytochrom_C; cl21467"
                     /db_xref="CDD:271887"
     gene            108282..108920
                     /locus_tag="O3Y_00505"
                     /db_xref="GeneID:11913042"
     CDS             108282..108920
                     /locus_tag="O3Y_00505"
                     /note="COG2227
                     2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
                     methylase"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase-like protein"
                     /protein_id="YP_005331978.1"
                     /db_xref="GI:379740009"
                     /db_xref="GeneID:11913042"
                     /translation="MHLCPLCHSENSQAYFADKQRDYFQCQQCELVYVNPEQRLSAER
                     EKGFYDLHQNIPSDEGYRRFLSRVCSPMLERVPPQSQGLDFGCGPGPTLSLMLEEAGH
                     SMALYDIFYHPDTQVLNRQYDFMTATEVIEHLHDPHRVWQQWLNLVKPGGWIGLMTKM
                     VKDLDAFAGWHYKNDLTHVIFFSRATFQYLAERDQLELEFIGNDVILLRKTQ"
     misc_feature    108462..108878
                     /locus_tag="O3Y_00505"
                     /note="Methyltransferase domain; Region: Methyltransf_23;
                     pfam13489"
                     /db_xref="CDD:257813"
     gene            108920..109468
                     /locus_tag="O3Y_00510"
                     /db_xref="GeneID:11913043"
     CDS             108920..109468
                     /locus_tag="O3Y_00510"
                     /note="COG3078 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase activator"
                     /protein_id="YP_005331979.1"
                     /db_xref="GI:379740010"
                     /db_xref="GeneID:11913043"
                     /translation="MSRSKKSRKPGTNSNDQLVVVRTRSESELESRLRKKLKKRKGLK
                     SGSRHSEGSESQVRQAAQKRDPRLGSKKPIPLIVAEPKKLNKQERKLAAEQELAMLEK
                     DAQLNVLLDRLDNGEKLGIGLQKYVDEKLDRIEVLMEQLGLLDDEPEPAPAPQSKPTK
                     KRKTEDDLLSEFEQLDVDKYQD"
     misc_feature    108920..109462
                     /locus_tag="O3Y_00510"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG3078"
                     /db_xref="CDD:225620"
     gene            109478..109966
                     /locus_tag="O3Y_00515"
                     /db_xref="GeneID:11913044"
     CDS             109478..109966
                     /locus_tag="O3Y_00515"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331980.1"
                     /db_xref="GI:379740011"
                     /db_xref="GeneID:11913044"
                     /translation="MNGMLLASVGGAIIVALASYAAYLLWQVKKQQALQRQQQQLAIE
                     KRNANIFDSVNILCMAGIQGQCDLSEISIRVYCIMDYVQGEQRINFEQEYPAISELYH
                     VVKNMPRGEARQQLPKQERMKQNLERTKAESRLQDAIIVELTALKQRIQPLNNQIAIQ
                     MV"
     misc_feature    109517..109915
                     /locus_tag="O3Y_00515"
                     /note="Protein of unknown function (DUF2489); Region:
                     DUF2489; pfam10675"
                     /db_xref="CDD:256117"
     gene            110105..111493
                     /locus_tag="O3Y_00520"
                     /db_xref="GeneID:11913045"
     CDS             110105..111493
                     /locus_tag="O3Y_00520"
                     /note="COG0635 Coproporphyrinogen III oxidase and related
                     Fe-S oxidoreductases"
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase"
                     /protein_id="YP_005331981.1"
                     /db_xref="GI:379740012"
                     /db_xref="GeneID:11913045"
                     /translation="MSSYVVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIA
                     DFDMACTQYPERPLSLYIHIPFCHKLCYYCGCNKVITRHSHKADEYLDVLEHEIRQRA
                     SLLIGRNVTQLHFGGGTPTFLTNAQISRLMTLLHSEFHFADEAEISIEIDPREIQLEV
                     LDHLRQEGFNRVSIGVQDFNKEVQKLVNREQDEQFIFDLVERAKQLGFRSTNLDLIYG
                     LPKQTAVTFAQTLQQVLTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQ
                     QTITTLTGAGYQFIGMDHFALPDDELAIAQRSGILHRNFQGYTTQGECDLVGFGVSAI
                     SMVGDAYAQNQKELKKYYAQVNEMRHALWKGVTLDKDDLLRREVIKQLICNFKLDKTA
                     IEREFNLRFNHYFRQDLALLQTFIDDGLVTVDERMIEVTLRGRLLIRNICMCFDKYLR
                     ERARQQQFSRVI"
     misc_feature    110129..111490
                     /locus_tag="O3Y_00520"
                     /note="coproporphyrinogen III oxidase; Provisional;
                     Region: PRK09249"
                     /db_xref="CDD:236430"
     misc_feature    110303..110926
                     /locus_tag="O3Y_00520"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    order(110303..110305,110309..110311,110315..110317,
                     110321..110329,110450..110452,110456..110461,
                     110552..110560,110627..110629,110750..110752,
                     110840..110845)
                     /locus_tag="O3Y_00520"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     misc_feature    111206..111412
                     /locus_tag="O3Y_00520"
                     /note="HemN C-terminal domain; Region: HemN_C; pfam06969"
                     /db_xref="CDD:253997"
     gene            complement(111557..112753)
                     /locus_tag="O3Y_00525"
                     /db_xref="GeneID:11913046"
     CDS             complement(111557..112753)
                     /locus_tag="O3Y_00525"
                     /note="COG3071 Uncharacterized enzyme of heme
                     biosynthesis"
                     /codon_start=1
                     /transl_table=11
                     /product="HemY protein"
                     /protein_id="YP_005331982.1"
                     /db_xref="GI:379740013"
                     /db_xref="GeneID:11913046"
                     /translation="MIRLIFLFVVLGLGLFVGTQYAGQQGYVLISIANRTIEMSVTTL
                     VIFIIGALAALFALEFLVKKILYTSFHTWNWFSVRKQRRSRRYTNEGIIKLLEGDWTQ
                     AEKKVTRWANHHDMPLLCYLVASEAANGMGDRAKRDRYLALAAQQNNSTLAVELTRAK
                     QQLGDGDNQAALETLTQLQRNHPHNTVVLNLLKQCYQALGEWQPLLALLPKLVKAKRL
                     SNEEAQQLEITAQRGILQDIASPKGSEGLMQHWAQLSRKLKAEPELLMCFITQLIQRK
                     ADYEAFSMIKESLKKQATPELYALLPELNISDRHPLIALLQEALRRDGNNAEAHSALG
                     QLYLREKHWADAQKHLEKALSLRSSVSDYAYLADALEKQNFTRAAHDVSRKALSLLES
                     PSAQSS"
     misc_feature    complement(111560..112753)
                     /locus_tag="O3Y_00525"
                     /note="Uncharacterized enzyme of heme biosynthesis
                     [Coenzyme metabolism]; Region: HemY; COG3071"
                     /db_xref="CDD:225613"
     misc_feature    complement(112355..112678)
                     /locus_tag="O3Y_00525"
                     /note="HemY protein N-terminus; Region: HemY_N; pfam07219"
                     /db_xref="CDD:191703"
     misc_feature    complement(111578..111817)
                     /locus_tag="O3Y_00525"
                     /note="Tetratricopeptide repeat domain; typically contains
                     34 amino acids
                     [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
                     X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
                     a variety of organisms including bacteria, cyanobacteria,
                     yeast, fungi; Region: TPR; cd00189"
                     /db_xref="CDD:238112"
     misc_feature    complement(order(111596..111598,111605..111607,
                     111617..111619,111653..111655,111695..111697,
                     111704..111706,111716..111718,111752..111754,
                     111797..111799,111806..111808))
                     /locus_tag="O3Y_00525"
                     /note="TPR motif; other site"
                     /db_xref="CDD:238112"
     misc_feature    complement(order(111635..111640,111647..111652,
                     111659..111664,111737..111742,111749..111754,
                     111758..111763))
                     /locus_tag="O3Y_00525"
                     /note="binding surface"
                     /db_xref="CDD:238112"
     gene            complement(112750..113949)
                     /locus_tag="O3Y_00530"
                     /db_xref="GeneID:11913047"
     CDS             complement(112750..113949)
                     /locus_tag="O3Y_00530"
                     /note="COG2959 Uncharacterized enzyme of heme
                     biosynthesis"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrin-III C-methyltransferase"
                     /protein_id="YP_005331983.1"
                     /db_xref="GI:379740014"
                     /db_xref="GeneID:11913047"
                     /translation="MTNNNKPQQEPEITVNPSSAAVTPPTAPDKQDSPAPNQPAAKKT
                     LDSTPAQDKPPQPNSQGKKLASVALLLVLALGAGFAYVHQQQKSEFNNQLQAVRAELK
                     QTRDALNAQLEQTVSKATSQATEITHRAETVLEQQQKSIESLQLAVADIKGRRPNDWL
                     LAEADYLVKLAGRKLFLEHDVETATQLMESADQRIAALNDPSLTALRKAMANDITTLK
                     NIPLIDRDGLVLRLISLQQQIDSLPLANAILPADQPQTSQAVSENIDDWQTNLKNSLK
                     AFADNFITFRSRDGNVIPLLSPTQHFYLRENLQAKLETAIKGVYTEQQTLYRIALDTA
                     AQWSTSFFNPDDKAVQSFNAALAQLAEQQVQVEYPVKLQAQQQLADVINERLRRSVSP
                     LTTGAEQ"
     misc_feature    complement(112759..113853)
                     /locus_tag="O3Y_00530"
                     /note="HemX; Region: HemX; pfam04375"
                     /db_xref="CDD:113156"
     gene            complement(113933..114700)
                     /gene="hemD"
                     /locus_tag="O3Y_00535"
                     /db_xref="GeneID:11913048"
     CDS             complement(113933..114700)
                     /gene="hemD"
                     /locus_tag="O3Y_00535"
                     /EC_number="4.2.1.75"
                     /note="COG1587 Uroporphyrinogen-III synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="YP_005331984.1"
                     /db_xref="GI:379740015"
                     /db_xref="GeneID:11913048"
                     /translation="MTVLVTRPDEQGAELCQLLHQQGIPALHHPLLAISASPQLAALA
                     EDLSSFDIIIAVSQHAVIFSDQFLQHRRICWPNNAIYLAVGQKTAHVFSKACQQSVDY
                     PEISDSEHLLALSMLRDVAGKKVLILRGNGGRELIYSTLVERGATVRYQEAYCRHERP
                     FAAAECVQKWQLAKVDSLVITSSEQLAFFIRQFETSHLPWVQQLTLLVPSQRIATLAH
                     QLGFHRIVVTLSAANRDLVAALMPEKPTGTLSNDQQQ"
     misc_feature    complement(113981..114694)
                     /gene="hemD"
                     /locus_tag="O3Y_00535"
                     /note="Uroporphyrinogen-III synthase (HemD) catalyzes the
                     asymmetrical cyclization of tetrapyrrole (linear) to
                     uroporphyrinogen-III, the fourth step in the biosynthesis
                     of heme. This ubiquitous enzyme is present in eukaryotes,
                     bacteria and archaea. Mutations in...; Region: HemD;
                     cd06578"
                     /db_xref="CDD:119440"
     misc_feature    complement(order(114146..114160,114233..114235,
                     114239..114241,114311..114313,114440..114442,
                     114524..114532,114680..114682))
                     /gene="hemD"
                     /locus_tag="O3Y_00535"
                     /note="active site"
                     /db_xref="CDD:119440"
     gene            complement(114761..115696)
                     /gene="hemC"
                     /locus_tag="O3Y_00540"
                     /db_xref="GeneID:11913049"
     CDS             complement(114761..115696)
                     /gene="hemC"
                     /locus_tag="O3Y_00540"
                     /EC_number="2.5.1.61"
                     /note="COG0181 Porphobilinogen deaminase"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen deaminase"
                     /protein_id="YP_005331985.1"
                     /db_xref="GI:379740016"
                     /db_xref="GeneID:11913049"
                     /translation="MTETPIRIATRQSPLALWQANYVKDALMAAHPGLQVELVTMVTR
                     GDVILDTPLAKVGGKGLFVKELEIAMLEGRADLAVHSMKDVPVDFPDGLGLVTICERE
                     DPRDAFVSNTYAKIEDLPSGAIVGTCSLRRQCQLKAARPDLVIKELRGNVGTRLSKLD
                     AGEYDAIILAAAGLKRLELESRIRSFIEPEQSLPAVGQGAVGIECRVNDQRVRALLAP
                     LNHADTADRVRCERAMNLTLQGGCQVPIGSYALLEGDTIWLRALVGEPDGSQIVRGEI
                     RGPRTQAEQLGITLAEQLLSQGAKEILERLYCDHE"
     misc_feature    complement(114809..115684)
                     /gene="hemC"
                     /locus_tag="O3Y_00540"
                     /note="porphobilinogen deaminase; Reviewed; Region: hemC;
                     PRK00072"
                     /db_xref="CDD:234612"
     misc_feature    complement(114863..115684)
                     /gene="hemC"
                     /locus_tag="O3Y_00540"
                     /note="cd00494; Region: PBP2_EcHMBS_like; cd13646"
                     /db_xref="CDD:270364"
     misc_feature    complement(order(114971..114973,115112..115114,
                     115232..115234,115241..115255,115301..115306,
                     115310..115318,115445..115450,115511..115513,
                     115652..115654,115664..115666))
                     /gene="hemC"
                     /locus_tag="O3Y_00540"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:270364"
     misc_feature    complement(order(114938..114943,115139..115141,
                     115145..115147,115172..115174,115394..115396))
                     /gene="hemC"
                     /locus_tag="O3Y_00540"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:270364"
     gene            116053..118584
                     /gene="cyaA"
                     /locus_tag="O3Y_00545"
                     /db_xref="GeneID:11913050"
     CDS             116053..118584
                     /gene="cyaA"
                     /locus_tag="O3Y_00545"
                     /EC_number="4.6.1.1"
                     /note="COG3072 Adenylate cyclase"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate cyclase"
                     /protein_id="YP_005331986.1"
                     /db_xref="GI:379740017"
                     /db_xref="GeneID:11913050"
                     /translation="MQAYTQTLIHRLDKLNRQRIERALALMDLQSQRVFHLIPALFQF
                     NHPLIPGYFSADTPFGIHLFEANPIQQQFIDDAQLTLGEPLTPADNPAILGLYTMGST
                     SSIGQSTSSDLDIWVCVSAQMSCEARDNLSSKCLLITDWAKSQGVEANFFIMNEERFR
                     HNHSEALSGENCGSSQHLLLLDEFYRSAVRLAGKRLLWQIVPPEMEECYDEYVHELCS
                     NGYLNCNEWIDFGKLNRIPAEEYFGANLWQLYKSIDSPYKSVLKAILLEAYSWEYPHT
                     QLLSIDSKRRFFADEPDLYGMDSYYQMLEKVTRYLVRIGDSTRLDLVRRCFYLKTHEK
                     LSREPGVGSMPWRREALRELTSEWQWSADLIAELDNRRHWKVEQVKVVHHALLDALML
                     SYRNLIQFARRNDITSAISPQDISILARKLYAAFEVLPGKVTLLNPQISPDLHEPDLS
                     FIEVCAGRTNKPGWYLYKQPLQAQRLIGQPYLEHNEYLSKLVAWAFFNGLITESTRLH
                     AVVREAQLDIDKFYQMVSDLRNTFSLRKRRPTMQALANPCEISQLAMFINFEHDPTSE
                     LSGKALKVDLKNIDIFSFGAEQKCLVGSVDLVYRNSWQEVRTLHFEGQTAMLDALKTV
                     LGKMHQDALPPESVDVFCYSKNLRGVMRNLVYQLLAECIDLRLKPMEQEKRRRFKALR
                     MGDQMYGLFFERRGVSVQKLENSVDFYRSISTNKLKGSPLLMLDRDQDYPLPAVVDSF
                     ASEGLVQFFFEDTEKGFNIYVLDEANRVEVYHQFNGEKDEMIASVNSFYTSMLDDSNK
                     LGAKSINFNLPQYYQIIHPEEGETYVVPYRNDSAVYSKPSQVVNA"
     misc_feature    116053..118581
                     /gene="cyaA"
                     /locus_tag="O3Y_00545"
                     /note="Adenylate cyclase [Nucleotide transport and
                     metabolism]; Region: CyaA; COG3072"
                     /db_xref="CDD:225614"
     misc_feature    116053..116649
                     /gene="cyaA"
                     /locus_tag="O3Y_00545"
                     /note="Adenylate cyclase NT domain; Region: Adenyl_cycl_N;
                     pfam12633"
                     /db_xref="CDD:257178"
     misc_feature    116728..118548
                     /gene="cyaA"
                     /locus_tag="O3Y_00545"
                     /note="Adenylate cyclase, class-I; Region: Adenylate_cycl;
                     pfam01295"
                     /db_xref="CDD:250514"
     gene            complement(118690..119004)
                     /gene="cyaY"
                     /locus_tag="O3Y_00550"
                     /db_xref="GeneID:11913051"
     CDS             complement(118690..119004)
                     /gene="cyaY"
                     /locus_tag="O3Y_00550"
                     /note="COG1965 Protein implicated in iron transport,
                     frataxin homolog"
                     /codon_start=1
                     /transl_table=11
                     /product="frataxin-like protein"
                     /protein_id="YP_005331987.1"
                     /db_xref="GI:379740018"
                     /db_xref="GeneID:11913051"
                     /translation="MNETEFHQLVDSQLERIEAAIDEAGADIDYETSGNVMTLEFDDG
                     SQIIINRQEPMREIWLASKSGGYHFKSIDGEWICSKTGLELLTLLKQECDKHADEPID
                     WV"
     misc_feature    complement(118696..119004)
                     /gene="cyaY"
                     /locus_tag="O3Y_00550"
                     /note="Frataxin is a nuclear-encoded mitochondrial protein
                     implicated in Friedreich's ataxia (FRDA), an human
                     autosomal recessive neurodegenerative disease; Frataxin is
                     found in eukaryotes and in purple bacteria; lack of
                     frataxin causes iron to accumulate...; Region: Frataxin;
                     cd00503"
                     /db_xref="CDD:238280"
     misc_feature    complement(order(118918..118920,118924..118926,
                     118936..118941,118948..118950,118960..118962,
                     118969..118974,118996..118998))
                     /gene="cyaY"
                     /locus_tag="O3Y_00550"
                     /note="putative iron binding site [ion binding]; other
                     site"
                     /db_xref="CDD:238280"
     gene            119080..119196
                     /locus_tag="O3Y_00555"
                     /db_xref="GeneID:11913052"
     CDS             119080..119196
                     /locus_tag="O3Y_00555"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331988.1"
                     /db_xref="GI:379740019"
                     /db_xref="GeneID:11913052"
                     /translation="MKKKFTALFLLSALALAGCGQTGPLYMPDDAKQSEQSQ"
     misc_feature    <119131..119163
                     /locus_tag="O3Y_00555"
                     /note="Prokaryotic lipoprotein-attachment site; Region:
                     LPAM_2; pfam13627"
                     /db_xref="CDD:257937"
     gene            119229..120482
                     /locus_tag="O3Y_00560"
                     /db_xref="GeneID:11913053"
     CDS             119229..120482
                     /locus_tag="O3Y_00560"
                     /note="COG0019 Diaminopimelate decarboxylase"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="YP_005331989.1"
                     /db_xref="GI:379740020"
                     /db_xref="GeneID:11913053"
                     /translation="MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHA
                     FDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVF
                     SGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTH
                     PYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRL
                     LALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEP
                     GRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEA
                     QTYDLVGPVCETSDFLGKDRDLVLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVD
                     GNKTYLVRQREELSSLWALESVLPE"
     misc_feature    119238..120467
                     /locus_tag="O3Y_00560"
                     /note="diaminopimelate decarboxylase; Region: lysA;
                     TIGR01048"
                     /db_xref="CDD:233248"
     misc_feature    119304..120401
                     /locus_tag="O3Y_00560"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Diaminopimelate Decarboxylase; Region:
                     PLPDE_III_DapDC; cd06828"
                     /db_xref="CDD:143501"
     misc_feature    order(119403..119405,119409..119411,119466..119468,
                     119535..119537,119676..119678,119820..119822,
                     119826..119828,119835..119837,119943..119948,
                     120051..120062,120168..120170,120180..120182,
                     120258..120260,120342..120344,120354..120356,
                     120366..120368)
                     /locus_tag="O3Y_00560"
                     /note="active site"
                     /db_xref="CDD:143501"
     misc_feature    order(119403..119405,119409..119411,119466..119468,
                     119535..119537,119676..119678,119820..119822,
                     119826..119828,119835..119837,119943..119948,
                     120051..120062,120258..120260,120342..120344)
                     /locus_tag="O3Y_00560"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143501"
     misc_feature    order(119409..119411,119826..119828,119835..119837,
                     120060..120062,120168..120170,120180..120182,
                     120258..120263,120342..120344,120354..120356,
                     120366..120368)
                     /locus_tag="O3Y_00560"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143501"
     misc_feature    order(119409..119411,120258..120260)
                     /locus_tag="O3Y_00560"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143501"
     misc_feature    order(119424..119429,119472..119477,119481..119486,
                     119541..119549,119559..119561,119604..119606,
                     119613..119615,119736..119747,120105..120107,
                     120111..120113,120132..120134,120138..120140,
                     120249..120266,120270..120272,120351..120359,
                     120363..120374,120381..120383)
                     /locus_tag="O3Y_00560"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143501"
     gene            120494..121324
                     /gene="dapF"
                     /locus_tag="O3Y_00565"
                     /db_xref="GeneID:11913054"
     CDS             120494..121324
                     /gene="dapF"
                     /locus_tag="O3Y_00565"
                     /EC_number="5.1.1.7"
                     /note="COG0253 Diaminopimelate epimerase"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="YP_005331990.1"
                     /db_xref="GI:379740021"
                     /db_xref="GeneID:11913054"
                     /translation="MHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGF
                     DQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTK
                     KGKMVLNVEEEDLITVNMGVPEFEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNP
                     HVVTVVDDIRTAAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQA
                     CGSGACAAVAVGILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQISC
                     "
     misc_feature    120494..121321
                     /gene="dapF"
                     /locus_tag="O3Y_00565"
                     /note="diaminopimelate epimerase; Provisional; Region:
                     dapF; PRK00450"
                     /db_xref="CDD:234768"
     misc_feature    120506..120868
                     /gene="dapF"
                     /locus_tag="O3Y_00565"
                     /note="Diaminopimelate epimerase; Region: DAP_epimerase;
                     pfam01678"
                     /db_xref="CDD:250792"
     misc_feature    120953..121300
                     /gene="dapF"
                     /locus_tag="O3Y_00565"
                     /note="Diaminopimelate epimerase; Region: DAP_epimerase;
                     pfam01678"
                     /db_xref="CDD:250792"
     gene            121338..122036
                     /locus_tag="O3Y_00570"
                     /db_xref="GeneID:11913055"
     CDS             121338..122036
                     /locus_tag="O3Y_00570"
                     /note="COG3159 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331991.1"
                     /db_xref="GI:379740022"
                     /db_xref="GeneID:11913055"
                     /translation="MSQVTADALTAQVVAEYLYEHPDFFQHHPHLVERLALPTQTGAV
                     SLAHVQLARQRQRIDSLEEEITALMSLAANNDRTFHEFMDLQEQILKCSSLQAVLHAI
                     EAKARELNLRAYVRLLQRHDEKYGLASEDWQRFATNHFNGKSAYLGRLRQADRQRLLG
                     DRPAPEMGSYVVLPLQRQAPLGILAFASEDGGHFQPSMDTLFLRHLALVLAHLIETLP
                     WQSHDEERRTHPAS"
     misc_feature    121347..122000
                     /locus_tag="O3Y_00570"
                     /note="Protein of unknown function, DUF484; Region:
                     DUF484; pfam04340"
                     /db_xref="CDD:252535"
     gene            122005..122940
                     /gene="xerC"
                     /locus_tag="O3Y_00575"
                     /db_xref="GeneID:11913056"
     CDS             122005..122940
                     /gene="xerC"
                     /locus_tag="O3Y_00575"
                     /note="COG4973 Site-specific recombinase XerC"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerC"
                     /protein_id="YP_005331992.1"
                     /db_xref="GI:379740023"
                     /db_xref="GeneID:11913056"
                     /translation="MKNDERTPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLET
                     MTQYLVQVGLTHWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGEL
                     QANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAE
                     LVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFV
                     SKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGH
                     ENIATTQIYTHLDFQHLAQVYDQAHPRARKKNKDD"
     misc_feature    122026..122925
                     /gene="xerC"
                     /locus_tag="O3Y_00575"
                     /note="Site-specific recombinase XerC [DNA replication,
                     recombination, and repair]; Region: XerC; COG4973"
                     /db_xref="CDD:227307"
     misc_feature    122053..122304
                     /gene="xerC"
                     /locus_tag="O3Y_00575"
                     /note="Phage integrase, N-terminal SAM-like domain;
                     Region: Phage_int_SAM_1; pfam02899"
                     /db_xref="CDD:145844"
     misc_feature    122377..122883
                     /gene="xerC"
                     /locus_tag="O3Y_00575"
                     /note="XerD and XerC integrases, C-terminal catalytic
                     domains; Region: INT_XerDC_C; cd00798"
                     /db_xref="CDD:271179"
     misc_feature    order(122473..122475,122752..122754,122761..122766,
                     122857..122859)
                     /gene="xerC"
                     /locus_tag="O3Y_00575"
                     /note="active site"
                     /db_xref="CDD:271179"
     gene            122943..123662
                     /locus_tag="O3Y_00580"
                     /db_xref="GeneID:11913057"
     CDS             122943..123662
                     /locus_tag="O3Y_00580"
                     /note="COG1011 Predicted hydrolase (HAD superfamily)"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331993.1"
                     /db_xref="GI:379740024"
                     /db_xref="GeneID:11913057"
                     /translation="MLFYRPLASIQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHP
                     ITATRPLAWWLAMKRDIARRFPEQCHDVSQWRYLQVQHGLLELGYAQPEAEQAASETL
                     EQVMRWRNQVDVPAETHRVLAQLAAKVPLIAITNGNVQIEKIGLSGYFQTVLRAGPDG
                     RAKPYPDLFAQAAQQLQLEPRSILHVGDHLQTDVLGARQNGFQACWFNDQGQSIRRLA
                     KASVLPDVEIERLSELLLIVN"
     misc_feature    122961..123656
                     /locus_tag="O3Y_00580"
                     /note="Predicted hydrolase (HAD superfamily) [General
                     function prediction only]; Region: COG1011"
                     /db_xref="CDD:223943"
     misc_feature    123273..123563
                     /locus_tag="O3Y_00580"
                     /note="Haloacid dehalogenase-like hydrolases. The haloacid
                     dehalogenase-like (HAD) superfamily includes L-2-haloacid
                     dehalogenase, epoxide hydrolase, phosphoserine
                     phosphatase, phosphomannomutase, phosphoglycolate
                     phosphatase, P-type ATPase, and many others; Region:
                     HAD_like; cd01427"
                     /db_xref="CDD:119389"
     misc_feature    123345..123347
                     /locus_tag="O3Y_00580"
                     /note="motif II; other site"
                     /db_xref="CDD:119389"
     gene            123772..126261
                     /locus_tag="O3Y_00585"
                     /db_xref="GeneID:11913058"
     CDS             123772..126261
                     /locus_tag="O3Y_00585"
                     /note="COG2199 FOG: GGDEF domain"
                     /codon_start=1
                     /transl_table=11
                     /product="sensory box/GGDEF family protein"
                     /protein_id="YP_005331994.1"
                     /db_xref="GI:379740025"
                     /db_xref="GeneID:11913058"
                     /translation="MFTVSRLIPDLASANQVLETMDLPHGQSILVQIFSPLSREHVVQ
                     LARLIRSRHPQACLLGCSTEEVIFQGEVHHQVTLLQITVFEQTYLSRAVVDYSDDEAA
                     DAERLARQLELTSMSRAVVCFSWQMDTLQVARFALRDTQGAPVPVAGGAAKQTPSGRW
                     VLLDEACYQNASVAIALHGEALYVETGGYTEWQPVGRTYRVTAVEGDRVLRLDDEPIE
                     AIYQRNLGAQADLPHDWLISFPLMKGECRHQDLYLPLGLAEEGGLRFNRPLALQDEVR
                     FCFDHPSLTLERVYLTAQQLQAKQCQQVWVFNCALRLNFMHENHELQPLQAVAPTDGC
                     YCWGELLYEHGQQQVMHHSMTFLALREGAVRDDLVPIPLPSYPEGMTSPLFNLIRHAF
                     HDLDAMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLANFAANEHLIALKVT
                     NFNQINEKYGYPVGDKLLRDLSEQFQVFLDQKLAGQSGLYAIGVGEWATVFRAKLDGK
                     SIHSHFYQFVEQLEHVNFEPYGLPNVDYLSISLCAGLVSQGDFAEHSPDELLLRAIEA
                     RRYAFNNNHHFCNAARLKVQESVRQERLNWLSRVSRAVVRDDVVVYAQPICQARSHIV
                     ASYECLVRIEDEGEIILPGNFLPIITDTHLYTRLSRQMITHTFNMMRHRPEAFSINLS
                     PQDLMSERTLQHLEAAIKSVADPARVGLEVLESEQIKDYGRMIEVCNHFRTLGATIIV
                     DDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAE
                     FVHNQTVCRISEDMGVDYLQGYFLGRPSRLG"
     misc_feature    123772..124839
                     /locus_tag="O3Y_00585"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG3287"
                     /db_xref="CDD:225825"
     misc_feature    123859..124419
                     /locus_tag="O3Y_00585"
                     /note="FIST N domain; Region: FIST; pfam08495"
                     /db_xref="CDD:254834"
     misc_feature    124426..124791
                     /locus_tag="O3Y_00585"
                     /note="FIST C domain; Region: FIST_C; pfam10442"
                     /db_xref="CDD:255992"
     misc_feature    124960..125493
                     /locus_tag="O3Y_00585"
                     /note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
                     domain) [Signal    transduction mechanisms]; Region:
                     COG2199"
                     /db_xref="CDD:225109"
     misc_feature    order(125113..125130,125254..125256,125461..125463)
                     /locus_tag="O3Y_00585"
                     /note="nucleotidyl binding site; other site"
                     /db_xref="CDD:143637"
     misc_feature    order(125113..125115,125254..125256)
                     /locus_tag="O3Y_00585"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143637"
     misc_feature    125611..126255
                     /locus_tag="O3Y_00585"
                     /note="EAL domain. This domain is found in diverse
                     bacterial signaling proteins. It is called EAL after its
                     conserved residues and is also known as domain of unknown
                     function 2 (DUF2).  The EAL domain has been shown to
                     stimulate degradation of a second...; Region: EAL;
                     cd01948"
                     /db_xref="CDD:238923"
     gene            complement(126294..126890)
                     /locus_tag="O3Y_00590"
                     /db_xref="GeneID:11913059"
     CDS             complement(126294..126890)
                     /locus_tag="O3Y_00590"
                     /note="COG3148 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331995.1"
                     /db_xref="GI:379740026"
                     /db_xref="GeneID:11913059"
                     /translation="MNAACPDCGLKFQCLCSAVPSFHAPFQLSLLTHDNEWQRETNTG
                     RWLVKSMAECQAYTWSRVAANTELQARLTQPNARSFLVYPSEESVELTDALRSLREDE
                     IAHFIVLDATWQEARKMERKSPWLADVPRVHLTTDHVSAYRLRRNQQPGNLCTLEVGL
                     MLLRHFNAEASAEALEQFYHYSMNAFKADKSGHRWIER"
     misc_feature    complement(126297..126890)
                     /locus_tag="O3Y_00590"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG3148"
                     /db_xref="CDD:225690"
     gene            complement(126887..128431)
                     /locus_tag="O3Y_00595"
                     /db_xref="GeneID:11913060"
     CDS             complement(126887..128431)
                     /locus_tag="O3Y_00595"
                     /note="COG3650 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="YP_005331996.1"
                     /db_xref="GI:379740027"
                     /db_xref="GeneID:11913060"
                     /translation="MRALPFCAMSLAMLLQACTNTTSVSVEPDSAPIIPATLDKPETI
                     QPQSFMLRGEVVVGHEVRRFTPCGSHQQYWLNLSPEQLNEAMALNRSPYQPLYGELVG
                     TLTPPSQTGFNGDYVARIEVQSINQLSNESRGCEQPLSPTRAFGNEPFWSMRFVDGGL
                     QFQPMGGDKQQFSITRSQLSQDKRRYQFDGGELLLEQGQCRDGMSDNLYQWRSKLTLK
                     GGQYQGCATLANLDPTLEWSGVYFASSTEQTGFSVSLTLEKDHTAQTRYEYANGEPAV
                     VEQGYWQQLNPNQIQVVMTRHQQQYLLSERIFTREGYQLTATQEKVGQSVYNIADGGL
                     VLFRSLVELNESAVPPAVGQAAIHAQQIAGRADYEEDVDQAIRRYFNLHQTSPDNTQY
                     RWLKYDLNGDEQPELLVQLDWCGTGGCTLLIFDQHNQQWRFNSRITLVQNPIRLGKQT
                     HHGWQDLLFSVSGGGAKPAIHRLQYNGISYPTNPSVAPEANAEQISQVVLFADGLSPR
                     QSGIKL"
     misc_feature    complement(127718..128161)
                     /locus_tag="O3Y_00595"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG3650"
                     /db_xref="CDD:226176"
     gene            complement(128715..129542)
                     /locus_tag="O3Y_00600"
                     /db_xref="GeneID:11913061"
     CDS             complement(128715..129542)
                     /locus_tag="O3Y_00600"
                     /note="COG0561 Predicted hydrolases of the HAD
                     superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005331997.1"
                     /db_xref="GI:379740028"
                     /db_xref="GeneID:11913061"
                     /translation="MTTSAHKHPYKIVASDLDGTLLAPNHQLSEFSKQTLKQLHDKGF
                     TFIFATGRHHIDVAGIREIAGIPAYMITSNGARVHDQNDQLMYSKNVPQDLVQAIIDV
                     VKHDKQLFVHLYRNDEWMLNKEDEILRDFHEDSGFTYRVFDVNNAPTDGIAKIFFTQE
                     DQDHEHLVQYETLLNQRFGDKLNVAFSTPWCLEVMCAGVSKGDALQAVAESLHLGLEN
                     CIAFGDGMNDVEMLSMAGKGLVMGTAHEKVFNALPDNEVIGSNADDAVAHYLHQHLF"
     misc_feature    complement(128733..129515)
                     /locus_tag="O3Y_00600"
                     /note="putative hydrolase; Provisional; Region: PRK10976"
                     /db_xref="CDD:182878"
     misc_feature    complement(129219..129509)
                     /locus_tag="O3Y_00600"
                     /note="Haloacid dehalogenase-like hydrolases. The haloacid
                     dehalogenase-like (HAD) superfamily includes L-2-haloacid
                     dehalogenase, epoxide hydrolase, phosphoserine
                     phosphatase, phosphomannomutase, phosphoglycolate
                     phosphatase, P-type ATPase, and many others; Region:
                     HAD_like; cd01427"
                     /db_xref="CDD:119389"
     misc_feature    complement(order(129390..129395,129489..129497))
                     /locus_tag="O3Y_00600"
                     /note="active site"
                     /db_xref="CDD:119389"
     misc_feature    complement(129480..129497)
                     /locus_tag="O3Y_00600"
                     /note="motif I; other site"
                     /db_xref="CDD:119389"
     misc_feature    complement(129393..129395)
                     /locus_tag="O3Y_00600"
                     /note="motif II; other site"
                     /db_xref="CDD:119389"
     misc_feature    complement(128829..>128981)
                     /locus_tag="O3Y_00600"
                     /note="Haloacid dehalogenase-like hydrolases. The haloacid
                     dehalogenase-like (HAD) superfamily includes L-2-haloacid
                     dehalogenase, epoxide hydrolase, phosphoserine
                     phosphatase, phosphomannomutase, phosphoglycolate
                     phosphatase, P-type ATPase, and many others; Region:
                     HAD_like; cl21460"
                     /db_xref="CDD:271880"
     gene            complement(129657..130673)
                     /locus_tag="O3Y_00605"
                     /db_xref="GeneID:11913062"
     CDS             complement(129657..130673)
                     /locus_tag="O3Y_00605"
                     /note="COG2267 Lysophospholipase"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase"
                     /protein_id="YP_005331998.1"
                     /db_xref="GI:379740029"
                     /db_xref="GeneID:11913062"
                     /translation="MNPEKNLYPYTQESSLEQALNFEIAQVWHTRSEGTYRSFDKTHI
                     YWCSLKHPEHQKAVVIVNGRIESAWKYQELCYDLFRQGFDVYTYDHRGQGRSERLTED
                     RQIGHVHEFQDYVTDLKALVEHFDLGHYQERFLLAHSMGGAIATRYIQTTPAHPFSAL
                     ALSAPMFGVNMPWYLRPWALLITQIMAAVTLKPSYAPGYGPYHAKPFHLNLLTHSETR
                     YQLFRELYEAHPELQIGGPSHRWVWQSLMATKQCLQLTRQIKIPMLILQAGEEAIVCN
                     RAQIRLFKKLSRTQKRAALCRIAGARHELLFEQDAYRNQTLDHILRFFADSTIDHKRQ
                     HHRP"
     misc_feature    complement(129696..130592)
                     /locus_tag="O3Y_00605"
                     /note="lysophospholipase L2; Provisional; Region:
                     PRK10749"
                     /db_xref="CDD:182697"
     misc_feature    complement(130305..130553)
                     /locus_tag="O3Y_00605"
                     /note="Putative lysophospholipase; Region: Hydrolase_4;
                     pfam12146"
                     /db_xref="CDD:256874"
     gene            130748..131365
                     /gene="rhtB"
                     /locus_tag="O3Y_00610"
                     /db_xref="GeneID:11913063"
     CDS             130748..131365
                     /gene="rhtB"
                     /locus_tag="O3Y_00610"
                     /note="COG1280 Putative threonine efflux protein"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="YP_005331999.1"
                     /db_xref="GI:379740030"
                     /db_xref="GeneID:11913063"
                     /translation="MDIHVWLAYLLTAVVFSLAPGSGTVNSISNGLSYGTRHSLGAII
                     GLQIGLACHIVLVGIGIGALVAQSALAFTLIKWIGAAYLVWLGIQKWRDRAPLTATTT
                     SHELSQAALLRKAVLINLTNPKSIVFLVALFPQFIDPTRDHWPQFLVLGITTVTIDAI
                     VMFGYTALAAQLGRYIRSPNIMTRMNKLFGSMFMGCGMLLATAKA"
     misc_feature    130748..131362
                     /gene="rhtB"
                     /locus_tag="O3Y_00610"
                     /note="homoserine/homoserine lactone efflux protein;
                     Provisional; Region: rhtB; PRK10520"
                     /db_xref="CDD:182514"
     gene            131385..132611
                     /locus_tag="O3Y_00615"
                     /db_xref="GeneID:11913064"
     CDS             131385..132611
                     /locus_tag="O3Y_00615"
                     /note="COG3434 Predicted signal transduction protein
                     containing EAL and modified HD-GYP domains"
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction protein"
                     /protein_id="YP_005332000.1"
                     /db_xref="GI:379740031"
                     /db_xref="GeneID:11913064"
                     /translation="MYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEYMDADRATY
                     RLIVENFLSLGTNPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQPTDDLF
                     EAVQELSQRGYLLALDDFVYSPAWERFLPYVQIVKIDIMAMGLDKACEFVRGRLAQGS
                     RRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREVCQ
                     PEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSL
                     AVASYISSKKPKELYNLSLQRAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSI
                     EQLVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGVEQHCLELGFDLEDVRQ
                     ELIEAQRWSQDINRLI"
     misc_feature    131388..132608
                     /locus_tag="O3Y_00615"
                     /note="Predicted signal transduction protein containing
                     EAL and modified HD-GYP domains [Signal transduction
                     mechanisms]; Region: COG3434"
                     /db_xref="CDD:225968"
     misc_feature    131397..131966
                     /locus_tag="O3Y_00615"
                     /note="EAL domain; Region: EAL; pfam00563"
                     /db_xref="CDD:249961"
     gene            complement(132791..133261)
                     /locus_tag="O3Y_00620"
                     /db_xref="GeneID:11913065"
     CDS             complement(132791..133261)
                     /locus_tag="O3Y_00620"
                     /note="COG0783 DNA-binding ferritin-like protein
                     (oxidative damage protectant)"
                     /codon_start=1
                     /transl_table=11
                     /product="starvation-inducible DNA-binding protein"
                     /protein_id="YP_005332001.1"
                     /db_xref="GI:379740032"
                     /db_xref="GeneID:11913065"
                     /translation="MATNLIGLDTTQSQKLANALNNLLANYQVFYMNTRGYHWNIQGK
                     EFFELHAKFEEIYTDLQLKIDELAERILTLSARPMHSFSGYLKAAQIKEHTDSIDGRS
                     SMQGLVDGFSILLHQQRDILELAGETGDEGTSALMSDYIREQEKLVWMLNAWLK"
     misc_feature    complement(132797..133183)
                     /locus_tag="O3Y_00620"
                     /note="DPS protein, ferritin-like diiron-binding domain;
                     Region: DPS; cd01043"
                     /db_xref="CDD:153102"
     misc_feature    complement(132797..133171)
                     /locus_tag="O3Y_00620"
                     /note="Ferritin-like domain; Region: Ferritin; pfam00210"
                     /db_xref="CDD:249681"
     misc_feature    complement(order(133055..133060,133067..133069,
                     133079..133081,133112..133114,133145..133150,
                     133154..133156,133166..133171))
                     /locus_tag="O3Y_00620"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:153102"
     misc_feature    complement(order(133055..133057,133067..133069,
                     133100..133102,133112..133114,133148..133150))
                     /locus_tag="O3Y_00620"
                     /note="DPS ferroxidase diiron center [ion binding]; other
                     site"
                     /db_xref="CDD:153102"
     misc_feature    complement(order(132845..132850,132869..132871))
                     /locus_tag="O3Y_00620"
                     /note="ion pore; other site"
                     /db_xref="CDD:153102"
     gene            complement(133431..133760)
                     /locus_tag="O3Y_00625"
                     /db_xref="GeneID:11913066"
     CDS             complement(133431..133760)
                     /locus_tag="O3Y_00625"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332002.1"
                     /db_xref="GI:379740033"
                     /db_xref="GeneID:11913066"
                     /translation="MPFTLLISLALLIIAAVWFFSHFYRRHMQGENAPQRSAEVTILD
                     KQAIDIPHPLPGQDDQEFWIYVQKGRLGPKREFQVGIHYYHALNPGDKGVLTYQGQRF
                     LHFALKR"
     misc_feature    complement(133440..133712)
                     /locus_tag="O3Y_00625"
                     /note="Protein of unknown function (DUF2500); Region:
                     DUF2500; pfam10694"
                     /db_xref="CDD:151190"
     gene            133965..134333
                     /locus_tag="O3Y_00630"
                     /db_xref="GeneID:11913067"
     CDS             133965..134333
                     /locus_tag="O3Y_00630"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332003.1"
                     /db_xref="GI:379740034"
                     /db_xref="GeneID:11913067"
                     /translation="MSEIEQVVLRTRKLETLLREQYHAEGKGLHQLITSCEERLPHDV
                     IKKLRYVATIRNKVVHEDDYRLDDRKAFLAVCQECEDELTPRSGKFVWRIAFMLMMLM
                     TLGALFFYYWHWEELSQHFQ"
     gene            complement(134395..134475)
                     /locus_tag="O3Y_00635"
                     /db_xref="GeneID:11913068"
     CDS             complement(134395..134475)
                     /locus_tag="O3Y_00635"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332004.1"
                     /db_xref="GI:379740035"
                     /db_xref="GeneID:11913068"
                     /translation="MISSSQKQGLVMIAVIIGLMTLPMMY"
     gene            134836..135093
                     /locus_tag="O3Y_00640"
                     /db_xref="GeneID:11913069"
     CDS             134836..135093
                     /locus_tag="O3Y_00640"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332005.1"
                     /db_xref="GI:379740036"
                     /db_xref="GeneID:11913069"
                     /translation="MFLSFICFYIFKNGSYFSFICLVGCFQFFDFFVVVFIGFLFLFC
                     SFGLVDFSFFYFVLIVFHLFGVDLLSWFGWWQVFLFCNFIE"
     gene            135216..135839
                     /locus_tag="O3Y_00645"
                     /db_xref="GeneID:11913070"
     CDS             135216..135839
                     /locus_tag="O3Y_00645"
                     /note="COG3714 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332006.1"
                     /db_xref="GI:379740037"
                     /db_xref="GeneID:11913070"
                     /translation="MLSWISVVLSGFISISAYENQKLKQAIFFRIFSLLLLTIIVWEQ
                     HSHATPEVIFISLGLAVSMFAHGLRLNHRYHKASFVLFLVAQLLFSKAFWVQLSGSMV
                     WWLPALLVAASIVAFFLLLPQIDTLIFPVTIMGLMLVQMTWAAGELWLQEATVASGAG
                     FLGCLVYILSATLLAIHDYRRPLPWGHTLISSSYLIAQALISASIVF"
     misc_feature    135216..135836
                     /locus_tag="O3Y_00645"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG3714"
                     /db_xref="CDD:226237"
     gene            complement(135888..136154)
                     /locus_tag="O3Y_00650"
                     /db_xref="GeneID:11913071"
     CDS             complement(135888..136154)
                     /locus_tag="O3Y_00650"
                     /note="COG3776 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332007.1"
                     /db_xref="GI:379740038"
                     /db_xref="GeneID:11913071"
                     /translation="MKALLWLAKAAIGFVWLVLLFNIVMPFPGNAAIALYIMTAFLLF
                     MHGLQMLIFIGAFGDKVPLKRWEKWSILIFGIFALLDIRRKYMM"
     misc_feature    complement(135891..136154)
                     /locus_tag="O3Y_00650"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG3776"
                     /db_xref="CDD:226299"
     gene            complement(136151..136750)
                     /locus_tag="O3Y_00655"
                     /db_xref="GeneID:11913072"
     CDS             complement(136151..136750)
                     /locus_tag="O3Y_00655"
                     /note="COG0742 N6-adenine-specific methylase"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal RNA small subunit methyltransferase D"
                     /protein_id="YP_005332008.1"
                     /db_xref="GI:379740039"
                     /db_xref="GeneID:11913072"
                     /translation="MQRRRQPNPSQKKAPTGQVRIISGLWRGRKLPVHDAEGLRPTTD
                     RVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNV
                     QSLKAENIELIHTDALAFLRQSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAM
                     IYIECEKELPLTELPPHWHLHREKSAGQVCYRLFIREEQ"
     misc_feature    complement(136265..136567)
                     /locus_tag="O3Y_00655"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    complement(order(136349..136351,136400..136408,
                     136481..136486,136535..136555))
                     /locus_tag="O3Y_00655"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            136954..138129
                     /locus_tag="O3Y_00660"
                     /db_xref="GeneID:11913073"
     CDS             136954..138129
                     /locus_tag="O3Y_00660"
                     /note="COG0552 Signal recognition particle GTPase"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="YP_005332009.1"
                     /db_xref="GI:379740040"
                     /db_xref="GeneID:11913073"
                     /translation="MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVA
                     IQTETALTETETETETETETETETETATVEPARIVEQEKPTESFFARLKRSLSRTKAN
                     IGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEAL
                     YGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKV
                     MLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIAD
                     TAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPI
                     TGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE"
     misc_feature    137194..138126
                     /locus_tag="O3Y_00660"
                     /note="signal recognition particle-docking protein FtsY;
                     Provisional; Region: PRK10416"
                     /db_xref="CDD:236686"
     misc_feature    137227..137457
                     /locus_tag="O3Y_00660"
                     /note="SRP54-type protein, helical bundle domain; Region:
                     SRP54_N; pfam02881"
                     /db_xref="CDD:251589"
     misc_feature    137515..138051
                     /locus_tag="O3Y_00660"
                     /note="The signal recognition particle (SRP) mediates the
                     transport to or across the plasma membrane in bacteria and
                     the endoplasmic reticulum in eukaryotes. SRP recognizes
                     N-terminal sighnal sequences of newly synthesized
                     polypeptides at the ribosome. The...; Region: SRP;
                     cd03115"
                     /db_xref="CDD:239389"
     misc_feature    137533..137556
                     /locus_tag="O3Y_00660"
                     /note="P loop; other site"
                     /db_xref="CDD:239389"
     misc_feature    order(137623..137625,137788..137790,137971..137973,
                     137980..137985)
                     /locus_tag="O3Y_00660"
                     /note="GTP binding site [chemical binding]; other site"
                     /db_xref="CDD:239389"
     gene            138178..138852
                     /locus_tag="O3Y_00665"
                     /db_xref="GeneID:11913074"
     CDS             138178..138852
                     /locus_tag="O3Y_00665"
                     /note="COG2884 Predicted ATPase involved in cell division"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="YP_005332010.1"
                     /db_xref="GI:379740041"
                     /db_xref="GeneID:11913074"
                     /translation="MIRFQQVSKAYRGGRQALQKVDFHLRRGEMAFLGGHSGAGKSTL
                     LKLICAIERPTDGKISFNGHDITRIPNKDIPFLRRNIGIVFQDHRLLMDRSIYDNVAL
                     PMRIESISENEIKRRVSAALDKTGLLDKARCLPSQLSGGEQQRVGIARAVVNRPTLLL
                     ADEPTGNLDPELSSRVLRLFEEFNRAGVTILLATHDIHLVNSRPQYRHLELNQGFLSE
                     VADYGR"
     misc_feature    138178..138849
                     /locus_tag="O3Y_00665"
                     /note="Predicted ATPase involved in cell division [Cell
                     division and chromosome partitioning]; Region: FtsE;
                     COG2884"
                     /db_xref="CDD:225438"
     misc_feature    138181..138825
                     /locus_tag="O3Y_00665"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl21455"
                     /db_xref="CDD:271875"
     misc_feature    138280..138303
                     /locus_tag="O3Y_00665"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(138289..138294,138298..138306,138433..138435,
                     138661..138666,138760..138762)
                     /locus_tag="O3Y_00665"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    138424..138435
                     /locus_tag="O3Y_00665"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    138589..138618
                     /locus_tag="O3Y_00665"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    138649..138666
                     /locus_tag="O3Y_00665"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    138673..138684
                     /locus_tag="O3Y_00665"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    138748..138768
                     /locus_tag="O3Y_00665"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            138842..139834
                     /locus_tag="O3Y_00670"
                     /db_xref="GeneID:11913075"
     CDS             138842..139834
                     /locus_tag="O3Y_00670"
                     /note="COG2177 Cell division protein"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="YP_005332011.1"
                     /db_xref="GI:379740042"
                     /db_xref="GeneID:11913075"
                     /translation="MAVKPGNQKISKTTKSTKSKPRDVKRAKTDSFLAIHFKQAKASF
                     AALWRRPLGNILTLAVISMALALPASLYLLSKNIASVAERVAEPSQLSVYLHIDTPEP
                     RIIVLKDDLERRDEIAKVKYISPQQGLDDLSQYAGFEQAISLLDNATLPAVLVVTPKV
                     DSREQIQTLAKALQAEEGVTDVRMDEDWFARLDAIRHLATIVVISLSSLMLMSVFLIV
                     GNTLRFNVQANKEEIQTMKLIGATDAYILRPYLYSGMWFGLLGAVAAWLLTALMTILL
                     NGAVEALAQLYDSRFRLIGLGWDESLLLLMLGVFLGCVAAKVSAKRHLKEIEPV"
     misc_feature    138932..139831
                     /locus_tag="O3Y_00670"
                     /note="Cell division protein [Cell division and chromosome
                     partitioning]; Region: FtsX; COG2177"
                     /db_xref="CDD:225088"
     misc_feature    138962..139828
                     /locus_tag="O3Y_00670"
                     /note="FtsX-like permease family; Region: FtsX; cl21674"
                     /db_xref="CDD:272094"
     gene            140004..140864
                     /locus_tag="O3Y_00675"
                     /db_xref="GeneID:11913076"
     CDS             140004..140864
                     /locus_tag="O3Y_00675"
                     /note="COG0568 DNA-directed RNA polymerase, sigma subunit
                     (sigma70/sigma32)"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-32"
                     /protein_id="YP_005332012.1"
                     /db_xref="GI:379740043"
                     /db_xref="GeneID:11913076"
                     /translation="MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYK
                     GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLV
                     SFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARE
                     LGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENW
                     EAHTTQRLSMALASLDERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAM
                     RKLKEAVGEF"
     misc_feature    140004..140861
                     /locus_tag="O3Y_00675"
                     /note="RNA polymerase factor sigma-32; Reviewed; Region:
                     PRK06596"
                     /db_xref="CDD:235838"
     misc_feature    140040..>140123
                     /locus_tag="O3Y_00675"
                     /note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
                     pfam00140"
                     /db_xref="CDD:249622"
     misc_feature    140160..140372
                     /locus_tag="O3Y_00675"
                     /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
                     /db_xref="CDD:252661"
     misc_feature    140673..140843
                     /locus_tag="O3Y_00675"
                     /note="Sigma70, region (SR) 4 refers to the most
                     C-terminal of four conserved domains found in Escherichia
                     coli (Ec) sigma70, the main housekeeping sigma, and
                     related sigma-factors (SFs). A SF is a dissociable subunit
                     of RNA polymerase, it directs bacterial or...; Region:
                     Sigma70_r4; cd06171"
                     /db_xref="CDD:100119"
     misc_feature    order(140703..140705,140733..140735,140760..140765,
                     140793..140795,140799..140804,140808..140816,
                     140820..140825,140829..140831)
                     /locus_tag="O3Y_00675"
                     /note="DNA binding residues [nucleotide binding]"
                     /db_xref="CDD:100119"
     gene            complement(141066..142466)
                     /locus_tag="O3Y_00680"
                     /db_xref="GeneID:11913077"
     CDS             complement(141066..142466)
                     /locus_tag="O3Y_00680"
                     /EC_number="1.6.1.1"
                     /note="COG1249 Pyruvate/2-oxoglutarate dehydrogenase
                     complex, dihydrolipoamide dehydrogenase (E3) component,
                     and related enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="soluble pyridine nucleotide transhydrogenase"
                     /protein_id="YP_005332013.1"
                     /db_xref="GI:379740044"
                     /db_xref="GeneID:11913077"
                     /translation="MGQKNHFDVIVIGSGPGGEGAAMGLTKGGKNVAIIEKESSVGGG
                     CTHWGTIPSKALRHAVSRIIEFNSNPLFCKNNSSIHATFSTILSHAKSVIDKQTRLRQ
                     GFYDRNQCTLIFGAAHFIDAHTVAVKKADGSIDTYSADKFVIATGSRPYHPKDVDFGH
                     PRIYDSDSILNLEHDPRHIIIYGAGVIGCEYASIFRGLDVKTDLINTRDRLLSFLDNE
                     VSDALSYHFWNSGVVIRNDETYDKVEGTSDGVIVHLKSGKKMRADCLLYANGRTGNTD
                     KLNLESVGLQADSRGQLVVNANYQTQVEHIYAVGDVIGYPSLASAAYDQGRFVAQAII
                     HGQAAHLLTEDIPTGIYTIPEISSVGRTEQELTAAKVPYEVGRASFKHLARAQIAGKD
                     IGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTM
                     AEAFRVAALNGLNRLF"
     misc_feature    complement(141069..142460)
                     /locus_tag="O3Y_00680"
                     /note="soluble pyridine nucleotide transhydrogenase;
                     Provisional; Region: PRK05249"
                     /db_xref="CDD:235373"
     misc_feature    complement(<142320..142445)
                     /locus_tag="O3Y_00680"
                     /note="Short-chain dehydrogenases/reductases (SDR);
                     Region: SDR; cl21454"
                     /db_xref="CDD:271874"
     misc_feature    complement(141696..141935)
                     /locus_tag="O3Y_00680"
                     /note="Pyridine nucleotide-disulphide oxidoreductase;
                     Region: Pyr_redox; pfam00070"
                     /db_xref="CDD:249559"
     misc_feature    complement(141093..141431)
                     /locus_tag="O3Y_00680"
                     /note="Pyridine nucleotide-disulphide oxidoreductase,
                     dimerization domain; Region: Pyr_redox_dim; pfam02852"
                     /db_xref="CDD:251571"
     gene            142774..143415
                     /locus_tag="O3Y_00685"
                     /db_xref="GeneID:11913078"
     CDS             142774..143415
                     /locus_tag="O3Y_00685"
                     /note="COG1309 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor FabR"
                     /protein_id="YP_005332014.1"
                     /db_xref="GI:379740045"
                     /db_xref="GeneID:11913078"
                     /translation="MKSLGIRAQQKEKTRRSLIDAAFSQLSADRSFSNLSLREVAREA
                     GIAPTSFYRHFKDMDELGLTMVDEGGLLLRQLMRQARQRIVKEGSVIRTSVETFMEFI
                     ESSPNVFRLLLRERSGTSCEFRAAVVREIQHFAAELTEYLVATGMTREEAMTQAEASV
                     TLVFSSGAEALDLDRRERDELAERLIMQLRMLAKGAHWYRKERERHRLKGALE"
     misc_feature    142780..143385
                     /locus_tag="O3Y_00685"
                     /note="DNA-binding transcriptional repressor FabR;
                     Provisional; Region: PRK11202"
                     /db_xref="CDD:236881"
     misc_feature    142825..142956
                     /locus_tag="O3Y_00685"
                     /note="Bacterial regulatory proteins, tetR family; Region:
                     TetR_N; pfam00440"
                     /db_xref="CDD:249860"
     gene            143455..143826
                     /locus_tag="O3Y_00690"
                     /db_xref="GeneID:11913079"
     CDS             143455..143826
                     /locus_tag="O3Y_00690"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332015.1"
                     /db_xref="GI:379740046"
                     /db_xref="GeneID:11913079"
                     /translation="MSRENNVQSTRAERKTLILALVAGMCSDALLSWLTMSSVPFSLF
                     ALIALVLSAQMLYQEYLAHPVAEEVPLVGLACFFVGAFGHSAFIKAQYPQEGSNFFSI
                     VIVLLLIFWIGRKLGYIGKPR"
     misc_feature    143476..143823
                     /locus_tag="O3Y_00690"
                     /note="Protein of unknown function (DUF1422); Region:
                     DUF1422; pfam07226"
                     /db_xref="CDD:148685"
     gene            complement(143863..144972)
                     /locus_tag="O3Y_00695"
                     /db_xref="GeneID:11913080"
     CDS             complement(143863..144972)
                     /locus_tag="O3Y_00695"
                     /EC_number="2.1.1.35"
                     /note="COG2265 SAM-dependent methyltransferases related to
                     tRNA (uracil-5-)-methyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uracil-5-)-methyltransferase"
                     /protein_id="YP_005332016.1"
                     /db_xref="GI:379740047"
                     /db_xref="GeneID:11913080"
                     /translation="MATLDVNPELYQAQLADKIARLKAMFVDYSMPELEVFESPVANY
                     RMRAEFRIWHEGDDMYYIMFNQETREKYRVDQFPAASRLINDLMPLLMDAMKGSPILR
                     HKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMK
                     VVLDRDYVVENLQVNGQPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQESKGDLLELY
                     CGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEG
                     KREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYISCNPETLQEN
                     LQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK"
     misc_feature    complement(143869..144972)
                     /locus_tag="O3Y_00695"
                     /note="tRNA (uracil-5-)-methyltransferase; Validated;
                     Region: PRK05031"
                     /db_xref="CDD:235332"
     misc_feature    complement(<144163..144336)
                     /locus_tag="O3Y_00695"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    complement(order(144172..144180,144253..144258,
                     144304..144324))
                     /locus_tag="O3Y_00695"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            145370..147205
                     /locus_tag="O3Y_00700"
                     /db_xref="GeneID:11913081"
     CDS             145370..147205
                     /locus_tag="O3Y_00700"
                     /note="COG4206 Outer membrane cobalamin receptor protein"
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 receptor"
                     /protein_id="YP_005332017.1"
                     /db_xref="GI:379740048"
                     /db_xref="GeneID:11913081"
                     /translation="MQKSALAIALASLLTPISYLHANEAQPQETVVVTANRFEQKASS
                     TLADVEIITRQDIEQTQAKTLPELLRRLTGVQITQNGGRGQLASLFVRGTSSDQVLVL
                     VDGIRFARAAKGAVDFNQIPLTYVDRIEYVRGARASLYGSEAIGGVINIITKARSQQQ
                     GTTVSAGLGSLDYQELSIASGVAIGEKGQMNVALGTESDKGYNVRPVPGVNDGDRHGF
                     RSDNALLGYVHQFDESWSLFANARAYENIYQYDNSYGTRDYKEAEKDDLSFTIGTQYQ
                     SERWVSELQLTTQKQKSWDYTQSKGKYSDTSDNLEQRNIQWINRYLVNDVWTFAGGVD
                     WRDESYIDKTADKEFDRSNTAAFAVVAAEWQQWLLEASLRFDDNQEYGSQTTHNIALG
                     YQFIPEFGVKASYGSAFKAPNLYQQYDPSYGNVNLQPEDADSAELSFYGLFSGIKWSI
                     TGYDYKINNLIDYNSTTKNYQNVIGESNIKGVEFTAEFATGIVQHQLSVDLKDADDSK
                     GKTLQRRAEHMYKWNALVAFEQVDWSIGYQYVGKRPDLDYNTYPTQNITLDAYSLVDT
                     SVSYYVTDSTTISARIDNLLDKEYETANGYPAAERAYYLNIGYQF"
     misc_feature    145370..147202
                     /locus_tag="O3Y_00700"
                     /note="TonB-dependent vitamin B12 receptor; Region:
                     TonB-B12; TIGR01779"
                     /db_xref="CDD:233572"
     misc_feature    145514..147202
                     /locus_tag="O3Y_00700"
                     /note="TonB dependent/Ligand-Gated channels are created by
                     a monomeric 22 strand (22,24) anti-parallel beta-barrel.
                     Ligands apparently bind to the large extracellular loops.
                     The N-terminal 150-200 residues form a plug from the
                     periplasmic end of barrel; Region: ligand_gated_channel;
                     cd01347"
                     /db_xref="CDD:238657"
     misc_feature    order(145514..145540,145568..145597,145634..145651,
                     145670..145693,145736..145768,145802..145828)
                     /locus_tag="O3Y_00700"
                     /note="N-terminal plug; other site"
                     /db_xref="CDD:238657"
     misc_feature    146264..146266
                     /locus_tag="O3Y_00700"
                     /note="ligand-binding site [chemical binding]; other site"
                     /db_xref="CDD:238657"
     gene            complement(147278..148993)
                     /locus_tag="O3Y_00705"
                     /db_xref="GeneID:11913082"
     CDS             complement(147278..148993)
                     /locus_tag="O3Y_00705"
                     /note="COG1404 Subtilisin-like serine proteases"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline serine exoprotease A precursor"
                     /protein_id="YP_005332018.1"
                     /db_xref="GI:379740049"
                     /db_xref="GeneID:11913082"
                     /translation="MNNFFSSKDEIVIGVLNMIVVSHDPTIFIHFLRKLIMFKKFLSL
                     CIVSTFSVAATSALAQPNQLVGKSSPQQLAPLMKAASGKGIKNQYIVVLKQPTTIMSN
                     DLQAFQQFTQRSVNALANKHALEIKNVFDSALSGFSAELTAEQLQALRADPNVDYIEQ
                     NQIITVNPIISASANAAQDNVTWGIDRIDQRDLPLNRSYNYNYDGSGVTAYVIDTGIA
                     FNHPEFGGRAKSGYDFIDNDNDASDCQGHGTHVAGTIGGAQYGVAKNVNLVGVRVLGC
                     DGSGSTEAIARGIDWVAQNASGPSVANLSLGGGISQAMDQAVARLVQRGVTAVIAAGN
                     DNKDACQVSPAREPSGITVGSTTNNDGRSNFSNWGNCVQIFAPGSDVTSASHKGGTTT
                     MSGTSMASPHVAGVAALYLQENKNLSPNQIKTLLSDRSTKGKVSDTQGTPNKLLYSLT
                     DNNTTPNPEPNPQPEPQPQPDSQLTNGKVVTGISGKQGELKKFYIDVPAGRRLSIETN
                     GGTGNLDLYVRLGIEPEPFAWDCASYRNGNNEVCTFPNTREGRHFITLYGTTEFNNVS
                     LVARY"
     misc_feature    complement(148499..148732)
                     /locus_tag="O3Y_00705"
                     /note="Peptidase inhibitor I9; Region: Inhibitor_I9;
                     pfam05922"
                     /db_xref="CDD:253461"
     misc_feature    complement(147698..148447)
                     /locus_tag="O3Y_00705"
                     /note="Peptidase S8 family domain in ProteinaseK-like
                     proteins; Region: Peptidases_S8_PCSK9_ProteinaseK_like;
                     cd04077"
                     /db_xref="CDD:173790"
     misc_feature    complement(order(148424..148429,148436..148438))
                     /locus_tag="O3Y_00705"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173790"
     misc_feature    complement(147716..148369)
                     /locus_tag="O3Y_00705"
                     /note="Subtilase family; Region: Peptidase_S8; pfam00082"
                     /db_xref="CDD:249571"
     misc_feature    complement(order(147803..147805,147812..147814,
                     147992..147994,148073..148078,148253..148255,
                     148352..148354))
                     /locus_tag="O3Y_00705"
                     /note="active site"
                     /db_xref="CDD:173790"
     misc_feature    complement(order(147803..147805,148253..148255,
                     148352..148354))
                     /locus_tag="O3Y_00705"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173790"
     misc_feature    complement(order(147875..147877,147944..147946,
                     147950..147952))
                     /locus_tag="O3Y_00705"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173790"
     misc_feature    complement(147320..147517)
                     /locus_tag="O3Y_00705"
                     /note="Bacterial pre-peptidase C-terminal domain; Region:
                     PPC; pfam04151"
                     /db_xref="CDD:252413"
     gene            149278..150075
                     /locus_tag="O3Y_00710"
                     /db_xref="GeneID:11913083"
     CDS             149278..150075
                     /locus_tag="O3Y_00710"
                     /EC_number="5.1.1.3"
                     /note="COG0796 Glutamate racemase"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="YP_005332019.1"
                     /db_xref="GI:379740050"
                     /db_xref="GeneID:11913083"
                     /translation="MSSPSFPRVLIFDSGVGGLSVYREIEARLPQLNYIYLFDNAAYP
                     YGELTQETLIARVDTLVTRMVEQERIDLVVIACNTASTIVLPVLRAKLTIPVVGVVPA
                     IKPASLIASKAIGLIATPATVKRQYTQELIRDFSANKNVELLGSTRLVNMAEEKLRGK
                     PLDLEELASILQPLKNTIDVAVLGCTHFPLIKEEIQQVLGEQVQLIDSGLAIARRVQE
                     LLGIEQAVGAKQKHRIYASAPPWEESALNIKLEQLGFNPVQPFLHPI"
     misc_feature    149281..149997
                     /locus_tag="O3Y_00710"
                     /note="glutamate racemase; Provisional; Region: PRK00865"
                     /db_xref="CDD:234851"
     gene            complement(150041..150499)
                     /locus_tag="O3Y_00715"
                     /db_xref="GeneID:11913084"
     CDS             complement(150041..150499)
                     /locus_tag="O3Y_00715"
                     /note="COG0724 RNA-binding proteins (RRM domain)"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="YP_005332020.1"
                     /db_xref="GI:379740051"
                     /db_xref="GeneID:11913084"
                     /translation="MKSDKSMLWIALLAVIGAGILSQLTLHSSFAFLIGVVATALICK
                     LSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTG
                     KRRGFGFVVIAASQAQTAIDALNEKEYMQRTLKVRIANDPKSDEEMAEQD"
     misc_feature    complement(150080..150307)
                     /locus_tag="O3Y_00715"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:271796"
     misc_feature    complement(150095..150304)
                     /locus_tag="O3Y_00715"
                     /note="RNA recognition motif (a.k.a. RRM, RBD, or RNP
                     domain); Region: RRM_6; pfam14259"
                     /db_xref="CDD:258445"
     gene            151053..152596
                     /locus_tag="O3Y_r13485"
                     /db_xref="GeneID:11913085"
     rRNA            151053..152596
                     /locus_tag="O3Y_r13485"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:11913085"
     gene            152663..152738
                     /locus_tag="O3Y_t13283"
                     /db_xref="GeneID:11913086"
     tRNA            152663..152738
                     /locus_tag="O3Y_t13283"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:11913086"
     gene            153024..155921
                     /locus_tag="O3Y_r13501"
                     /db_xref="GeneID:11913087"
     rRNA            153024..155921
                     /locus_tag="O3Y_r13501"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:11913087"
     gene            156043..156158
                     /locus_tag="O3Y_r13467"
                     /db_xref="GeneID:11913088"
     rRNA            156043..156158
                     /locus_tag="O3Y_r13467"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:11913088"
     gene            156206..156296
                     /locus_tag="O3Y_t13285"
                     /db_xref="GeneID:11913089"
     tRNA            156206..156296
                     /locus_tag="O3Y_t13285"
                     /product="tRNA-Ser"
                     /db_xref="GeneID:11913089"
     gene            complement(156407..157303)
                     /locus_tag="O3Y_00720"
                     /db_xref="GeneID:11913090"
     CDS             complement(156407..157303)
                     /locus_tag="O3Y_00720"
                     /note="COG0583 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator IlvY"
                     /protein_id="YP_005332021.1"
                     /db_xref="GI:379740052"
                     /db_xref="GeneID:11913090"
                     /translation="MNIKTLQLFMHLCDCKNFSKTASAMHLSPSALSRQIQKLEQDLG
                     HTLFLRDNRSVELTPAAHQLLPVAARIIHDWRQFTTELNDDSQELRGEIKLFCSVTAS
                     YSHLPELLSSFRLKHPYIEFKLLTGDPAQAIDKILHDEADIAISAMPEQLPSRIEFAT
                     ISEIPLSVIAPLGISSFMDELQKEQPDWNEIPFIVPESGTARDRANTWFKQMKIKPNI
                     YAQIAGHEAIVSLVALGCGVGIAPDVVINNSPVRDKIQRLSVTPIKPFMLGVCCKRSQ
                     LDNPLVQALWRVVSAKKSVVDK"
     misc_feature    complement(157118..157297)
                     /locus_tag="O3Y_00720"
                     /note="Bacterial regulatory helix-turn-helix protein, lysR
                     family; Region: HTH_1; pfam00126"
                     /db_xref="CDD:249610"
     misc_feature    complement(156428..157231)
                     /locus_tag="O3Y_00720"
                     /note="DNA-binding transcriptional regulator IlvY;
                     Provisional; Region: PRK11716"
                     /db_xref="CDD:236961"
     misc_feature    complement(156440..157030)
                     /locus_tag="O3Y_00720"
                     /note="The C-terminal substrate binding of LysR-type
                     transcriptional regulator IlvY, which activates the
                     expression of ilvC gene that encoding acetohydroxy acid
                     isomeroreductase for the biosynthesis of branched amino
                     acids; contains the type 2 periplasmic bindin; Region:
                     PBP2_IlvY; cd08430"
                     /db_xref="CDD:176121"
     misc_feature    complement(order(156602..156607,156611..156616,
                     156632..156649,156926..156946,156950..156952,
                     156962..156964,156971..156976,156980..156985))
                     /locus_tag="O3Y_00720"
                     /note="putative dimerization interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:176121"
     gene            157441..158925
                     /locus_tag="O3Y_00725"
                     /db_xref="GeneID:11913091"
     CDS             157441..158925
                     /locus_tag="O3Y_00725"
                     /EC_number="1.1.1.86"
                     /note="COG0059 Ketol-acid reductoisomerase"
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="YP_005332022.1"
                     /db_xref="GI:379740053"
                     /db_xref="GeneID:11913091"
                     /translation="MANYFNTLNLREQLDQLGRCRFMAREEFATEADYLKGKKVVIVG
                     CGAQGLNQGLNMRDSGLDVSYALRQAAIDEQRQSFKNAKNNGFNVGSYEQLIPTADLV
                     INLTPDKQHTSVVNAVMPLMKQGAALGYSHGFNIVEEGMQIRKDITVVMVAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPQGEGWEIAKAWAAATGGHRAGCLASSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYEKMVADGIDPGYAGKLLQFGWETITEALKFGGITHMMDR
                     LSNPAKIKAFELSEELKDLMRPLYNKHMDDIISGHFSSTMMADWANDDKDLFGWRAET
                     AETAFENYPTTDVKIAEQEYFDNGILMIAMVRAGVELAFEAMTASGIIDESAYYESLH
                     ELPLIANTVARKRLYEMNVVISDTAEYGNYLFANVAVPLLREKFMPKVGTDVIGKGLG
                     VVSNQVDNATLIEVNSIIRNHPVEYIGEELRGYMKDMKRIAVGD"
     misc_feature    157444..158913
                     /locus_tag="O3Y_00725"
                     /note="ketol-acid reductoisomerase; Validated; Region:
                     PRK05225"
                     /db_xref="CDD:235368"
     misc_feature    157540..158052
                     /locus_tag="O3Y_00725"
                     /note="Acetohydroxy acid isomeroreductase, catalytic
                     domain; Region: IlvN; pfam07991"
                     /db_xref="CDD:116601"
     misc_feature    order(157570..157578,157582..157584,157636..157644)
                     /locus_tag="O3Y_00725"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:240631"
     misc_feature    158512..158904
                     /locus_tag="O3Y_00725"
                     /note="Acetohydroxy acid isomeroreductase, catalytic
                     domain; Region: IlvC; pfam01450"
                     /db_xref="CDD:250630"
     gene            complement(159052..159303)
                     /locus_tag="O3Y_00730"
                     /db_xref="GeneID:11913092"
     CDS             complement(159052..159303)
                     /locus_tag="O3Y_00730"
                     /note="COG2960 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332023.1"
                     /db_xref="GI:379740054"
                     /db_xref="GeneID:11913092"
                     /translation="MFDAKKLEQIAKQIHEAMPQPVKELGADVEQKVRQVIQGQLNKL
                     DVVSREEFDVQTQVLLRTRQKLTELEQKMAELEAKLADK"
     misc_feature    complement(159055..159303)
                     /locus_tag="O3Y_00730"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG2960"
                     /db_xref="CDD:225508"
     gene            complement(159419..162529)
                     /locus_tag="O3Y_00735"
                     /db_xref="GeneID:11913093"
     CDS             complement(159419..162529)
                     /locus_tag="O3Y_00735"
                     /note="COG0841 Cation/multidrug efflux pump"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332024.1"
                     /db_xref="GI:379740055"
                     /db_xref="GeneID:11913093"
                     /translation="MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTV
                     ITVSTGYYGASADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPN
                     AALSDVLAKTNSVRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERV
                     VNPQLYAVNGVSSIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQ
                     AIGEFVLYNGSADTQVSTVEDLESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANG
                     REAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVI
                     KTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV
                     LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIAL
                     MGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDR
                     MTARYERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPS
                     NANLDYLANTMDDVNKILSDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQATV
                     TNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVK
                     ANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNG
                     RSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNS
                     ATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLAL
                     AIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLIT
                     KHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGA
                     AQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHKPLPVFVEDKDLEKLARIDEAK
                     AAHRQL"
     misc_feature    complement(159500..162529)
                     /locus_tag="O3Y_00735"
                     /note="multidrug efflux protein; Reviewed; Region:
                     PRK09579"
                     /db_xref="CDD:169983"
     misc_feature    complement(161084..>161524)
                     /locus_tag="O3Y_00735"
                     /note="MMPL family; Region: MMPL; cl21543"
                     /db_xref="CDD:271963"
     gene            complement(162541..163647)
                     /locus_tag="O3Y_00740"
                     /db_xref="GeneID:11913094"
     CDS             complement(162541..163647)
                     /locus_tag="O3Y_00740"
                     /note="COG0845 Membrane-fusion protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332025.1"
                     /db_xref="GI:379740056"
                     /db_xref="GeneID:11913094"
                     /translation="MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPV
                     TVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS
                     AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKAT
                     IARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQ
                     EVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILP
                     KLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPG
                     DVVVTTGQVRLSNGAKVRIVESDATTPPAETPML"
     misc_feature    complement(162586..163518)
                     /locus_tag="O3Y_00740"
                     /note="RND family efflux transporter, MFP subunit; Region:
                     RND_mfp; TIGR01730"
                     /db_xref="CDD:233547"
     misc_feature    complement(<163144..>163389)
                     /locus_tag="O3Y_00740"
                     /note="ligand binding domain of Tar- and Tsr-related
                     chemoreceptors; Region: Tar_Tsr_LBD; cl00144"
                     /db_xref="CDD:260214"
     misc_feature    complement(162850..163155)
                     /locus_tag="O3Y_00740"
                     /note="HlyD family secretion protein; Region: HlyD_3;
                     pfam13437"
                     /db_xref="CDD:257762"
     gene            complement(163666..164247)
                     /locus_tag="O3Y_00745"
                     /db_xref="GeneID:11913095"
     CDS             complement(163666..164247)
                     /locus_tag="O3Y_00745"
                     /note="COG1309 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="YP_005332026.1"
                     /db_xref="GI:379740057"
                     /db_xref="GeneID:11913095"
                     /translation="MSEIVYGDKQLQILIAAEKLIAEQGFQGLSMHKVAKAANMATGT
                     IYRYFRDKDHLLIEVRLHVSQKIAEAVQANLRDDMSLQERFRTMWLNIWTLAGSCRDI
                     ISNRVQYESLPTTTCCNVRELEQKMFAKVELLFDQGKQQGIFKPLDNHLLSALSFETT
                     VTLARQYALGFYQLDDSTLDAMIQASWDAITQH"
     misc_feature    complement(163669..164226)
                     /locus_tag="O3Y_00745"
                     /note="Transcriptional regulator [Transcription]; Region:
                     AcrR; COG1309"
                     /db_xref="CDD:224228"
     misc_feature    complement(164071..164211)
                     /locus_tag="O3Y_00745"
                     /note="Bacterial regulatory proteins, tetR family; Region:
                     TetR_N; pfam00440"
                     /db_xref="CDD:249860"
     gene            164408..166423
                     /locus_tag="O3Y_00750"
                     /db_xref="GeneID:11913096"
     CDS             164408..166423
                     /locus_tag="O3Y_00750"
                     /note="COG0210 Superfamily I DNA and RNA helicases"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Rep"
                     /protein_id="YP_005332027.1"
                     /db_xref="GI:379740058"
                     /db_xref="GeneID:11913096"
                     /translation="MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCG
                     YKARNIAAVTFTNKAAREMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLK
                     AGFSLFDDQDQLALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQ
                     QLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQD
                     TNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQN
                     YRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAH
                     KFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRV
                     LVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGL
                     ENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSD
                     LYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLE
                     FPYVYLIGAEEGILPHQTSIDEENVEEERRLMYVGITRAQRELTFIVCKERRQFGELI
                     KPSQSRFLDELPQDDIEWEVKKKPVTQEERMAKGQAHIANLRAMFKK"
     misc_feature    164411..166405
                     /locus_tag="O3Y_00750"
                     /note="ATP-dependent DNA helicase Rep; Region: rep;
                     TIGR01074"
                     /db_xref="CDD:130146"
     misc_feature    164432..164671
                     /locus_tag="O3Y_00750"
                     /note="Part of AAA domain; Region: AAA_19; pfam13245"
                     /db_xref="CDD:257601"
     misc_feature    <166076..166243
                     /locus_tag="O3Y_00750"
                     /note="UvrD-like helicase C-terminal domain; Region:
                     UvrD_C_2; pfam13538"
                     /db_xref="CDD:257857"
     gene            complement(166490..166897)
                     /locus_tag="O3Y_00755"
                     /db_xref="GeneID:11913097"
     CDS             complement(166490..166897)
                     /locus_tag="O3Y_00755"
                     /note="COG3245 Cytochrome c5"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5"
                     /protein_id="YP_005332028.1"
                     /db_xref="GI:379740059"
                     /db_xref="GeneID:11913097"
                     /translation="MDMSRSLLSVLFAALTFSTAAFALTEADKNAIAERIKPVGDVYL
                     AGSEPVQAAPTGPRDGATVYGTFCTACHSAGISGAPKTGNAADWGPRIAQGKDVLKNH
                     ALNGFNAMPPKGTCMDCSDDEIVAAIEHMIAGL"
     misc_feature    complement(166493..166861)
                     /locus_tag="O3Y_00755"
                     /note="Cytochrome c5 [Energy production and conversion];
                     Region: CycB; COG3245"
                     /db_xref="CDD:225784"
     gene            167187..167263
                     /locus_tag="O3Y_t13287"
                     /db_xref="GeneID:11913098"
     tRNA            167187..167263
                     /locus_tag="O3Y_t13287"
                     /product="tRNA-Arg"
                     /db_xref="GeneID:11913098"
     gene            167299..167374
                     /locus_tag="O3Y_t13289"
                     /db_xref="GeneID:11913099"
     tRNA            167299..167374
                     /locus_tag="O3Y_t13289"
                     /product="tRNA-His"
                     /db_xref="GeneID:11913099"
     gene            167436..167512
                     /locus_tag="O3Y_t13291"
                     /db_xref="GeneID:11913100"
     tRNA            167436..167512
                     /locus_tag="O3Y_t13291"
                     /product="tRNA-Pro"
                     /db_xref="GeneID:11913100"
     gene            167581..167656
                     /locus_tag="O3Y_t13293"
                     /db_xref="GeneID:11913101"
     tRNA            167581..167656
                     /locus_tag="O3Y_t13293"
                     /product="tRNA-His"
                     /db_xref="GeneID:11913101"
     gene            167718..167794
                     /locus_tag="O3Y_t13295"
                     /db_xref="GeneID:11913102"
     tRNA            167718..167794
                     /locus_tag="O3Y_t13295"
                     /product="tRNA-Pro"
                     /db_xref="GeneID:11913102"
     gene            168029..168238
                     /locus_tag="O3Y_00760"
                     /db_xref="GeneID:11913103"
     CDS             168029..168238
                     /locus_tag="O3Y_00760"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332029.1"
                     /db_xref="GI:379740060"
                     /db_xref="GeneID:11913103"
                     /translation="MNYFYDLSELNWEFFGFYDWIDAYHPEFYFVVCTQNLAIVSYLL
                     IVPFLRGEKLCVGCFISCYESRRLQ"
     gene            168530..170245
                     /locus_tag="O3Y_00765"
                     /db_xref="GeneID:11913104"
     CDS             168530..170245
                     /locus_tag="O3Y_00765"
                     /note="COG1123 ATPase components of various ABC-type
                     transport systems, contain duplicated ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division transporter ATP-binding protein
                     FtsE"
                     /protein_id="YP_005332030.1"
                     /db_xref="GI:379740061"
                     /db_xref="GeneID:11913104"
                     /translation="MSLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGA
                     GKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSL
                     NPLFTVEHQLTETIHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQ
                     RVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVS
                     NVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEA
                     KELKPLDVKSHWLGQSQDHRKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSF
                     AVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQ
                     MQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLK
                     YPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTM
                     LFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEFTGLRE
                     STTAA"
     misc_feature    168530..170206
                     /locus_tag="O3Y_00765"
                     /note="ATPase components of various ABC-type transport
                     systems, contain duplicated ATPase [General function
                     prediction only]; Region: COG1123"
                     /db_xref="CDD:224048"
     misc_feature    168536..169237
                     /locus_tag="O3Y_00765"
                     /note="ATP-binding cassette domain of nickel/oligopeptides
                     specific transporters; Region: ABC_NikE_OppD_transporters;
                     cd03257"
                     /db_xref="CDD:213224"
     misc_feature    168647..168670
                     /locus_tag="O3Y_00765"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213224"
     misc_feature    order(168656..168661,168665..168673,168815..168817,
                     169061..169066,169163..169165)
                     /locus_tag="O3Y_00765"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213224"
     misc_feature    168806..168817
                     /locus_tag="O3Y_00765"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213224"
     misc_feature    168989..169018
                     /locus_tag="O3Y_00765"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213224"
     misc_feature    169049..169066
                     /locus_tag="O3Y_00765"
                     /note="Walker B; other site"
                     /db_xref="CDD:213224"
     misc_feature    169073..169084
                     /locus_tag="O3Y_00765"
                     /note="D-loop; other site"
                     /db_xref="CDD:213224"
     misc_feature    169151..169171
                     /locus_tag="O3Y_00765"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213224"
     misc_feature    169226..>169336
                     /locus_tag="O3Y_00765"
                     /note="Oligopeptide/dipeptide transporter, C-terminal
                     region; Region: oligo_HPY; cl07097"
                     /db_xref="CDD:263181"
     misc_feature    169433..170140
                     /locus_tag="O3Y_00765"
                     /note="ATP-binding cassette domain of nickel/oligopeptides
                     specific transporters; Region: ABC_NikE_OppD_transporters;
                     cd03257"
                     /db_xref="CDD:213224"
     misc_feature    169565..169588
                     /locus_tag="O3Y_00765"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213224"
     misc_feature    order(169574..169579,169583..169591,169721..169723,
                     169964..169969,170066..170068)
                     /locus_tag="O3Y_00765"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213224"
     misc_feature    169712..169723
                     /locus_tag="O3Y_00765"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213224"
     misc_feature    169892..169921
                     /locus_tag="O3Y_00765"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213224"
     misc_feature    169952..169969
                     /locus_tag="O3Y_00765"
                     /note="Walker B; other site"
                     /db_xref="CDD:213224"
     misc_feature    169976..169987
                     /locus_tag="O3Y_00765"
                     /note="D-loop; other site"
                     /db_xref="CDD:213224"
     misc_feature    170054..170074
                     /locus_tag="O3Y_00765"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213224"
     misc_feature    170132..>170212
                     /locus_tag="O3Y_00765"
                     /note="Oligopeptide/dipeptide transporter, C-terminal
                     region; Region: oligo_HPY; cl07097"
                     /db_xref="CDD:263181"
     gene            170337..171893
                     /locus_tag="O3Y_00770"
                     /db_xref="GeneID:11913105"
     CDS             170337..171893
                     /locus_tag="O3Y_00770"
                     /note="COG0747 ABC-type dipeptide transport system,
                     periplasmic component"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="YP_005332031.1"
                     /db_xref="GI:379740062"
                     /db_xref="GeneID:11913105"
                     /translation="MKTMKNKLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLS
                     GGTLQLSHMVFDPLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTAD
                     DVVWTFNRLKESADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKF
                     YTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKG
                     NVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITF
                     QMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR
                     FDLNKAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPK
                     AQYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDK
                     LVNAANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDF
                     PYFGDLVVKE"
     misc_feature    170409..171839
                     /locus_tag="O3Y_00770"
                     /note="The substrate-binding component of an
                     uncharacterized ABC-type
                     nickel/dipeptide/oligopeptide-like import system contains
                     the type 2 periplasmic binding fold; Region:
                     PBP2_NikA_DppA_OppA_like_2; cd08498"
                     /db_xref="CDD:173863"
     misc_feature    170418..171890
                     /locus_tag="O3Y_00770"
                     /note="ABC-type oligopeptide transport system, periplasmic
                     component [Amino acid transport and metabolism]; Region:
                     OppA; COG4166"
                     /db_xref="CDD:226636"
     gene            172048..173025
                     /locus_tag="O3Y_00775"
                     /db_xref="GeneID:11913106"
     CDS             172048..173025
                     /locus_tag="O3Y_00775"
                     /note="COG0601 ABC-type dipeptide/oligopeptide/nickel
                     transport systems, permease components"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide/nickel transport system permease
                     protein"
                     /protein_id="YP_005332032.1"
                     /db_xref="GI:379740063"
                     /db_xref="GeneID:11913106"
                     /translation="MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSE
                     AERQALRDELGLNDPFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVF
                     GATLIIIVFSIPLGVYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGW
                     LPSYGRGETVNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSE
                     YIKFAQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFL
                     FLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTVNLTGKGA"
     misc_feature    172048..172995
                     /locus_tag="O3Y_00775"
                     /note="ABC-type dipeptide/oligopeptide/nickel transport
                     systems, permease components [Amino acid transport and
                     metabolism / Inorganic ion transport and metabolism];
                     Region: DppB; COG0601"
                     /db_xref="CDD:223674"
     misc_feature    172327..172953
                     /locus_tag="O3Y_00775"
                     /note="Transmembrane subunit (TM) found in Periplasmic
                     Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters which generally bind type 2 PBPs. These types
                     of transporters consist of a PBP, two TMs, and two
                     cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
                     cd06261"
                     /db_xref="CDD:119394"
     misc_feature    order(172375..172380,172387..172392,172405..172407,
                     172438..172449,172453..172482,172489..172494,
                     172498..172500,172639..172644,172648..172650,
                     172654..172656,172663..172668,172672..172674,
                     172684..172689,172696..172698,172747..172749,
                     172789..172794,172801..172803,172822..172833,
                     172840..172845,172870..172875,172903..172908,
                     172915..172920,172924..172929,172936..172941,
                     172948..172953)
                     /locus_tag="O3Y_00775"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(172456..172500,172822..172839)
                     /locus_tag="O3Y_00775"
                     /note="conserved gate region; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(172498..172500,172624..172626,172840..172842,
                     172864..172866,172873..172875,172903..172905)
                     /locus_tag="O3Y_00775"
                     /note="putative PBP binding loops; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(172699..172737,172753..172758,172768..172770)
                     /locus_tag="O3Y_00775"
                     /note="ABC-ATPase subunit interface; other site"
                     /db_xref="CDD:119394"
     gene            173028..173966
                     /locus_tag="O3Y_00780"
                     /db_xref="GeneID:11913107"
     CDS             173028..173966
                     /locus_tag="O3Y_00780"
                     /note="COG1173 ABC-type dipeptide/oligopeptide/nickel
                     transport systems, permease components"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide/nickel transport system permease
                     protein"
                     /protein_id="YP_005332033.1"
                     /db_xref="GI:379740064"
                     /db_xref="GeneID:11913107"
                     /translation="MSAVSIAPSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAI
                     SAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSL
                     TIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKAS
                     FGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMF
                     RHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGA
                     WWITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYKG"
     misc_feature    173043..173951
                     /locus_tag="O3Y_00780"
                     /note="ABC-type dipeptide/oligopeptide/nickel transport
                     systems, permease components [Amino acid transport and
                     metabolism / Inorganic ion transport and metabolism];
                     Region: DppC; COG1173"
                     /db_xref="CDD:224094"
     misc_feature    173079..173237
                     /locus_tag="O3Y_00780"
                     /note="N-terminal TM domain of oligopeptide transport
                     permease C; Region: OppC_N; pfam12911"
                     /db_xref="CDD:257395"
     misc_feature    173322..173858
                     /locus_tag="O3Y_00780"
                     /note="Transmembrane subunit (TM) found in Periplasmic
                     Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters which generally bind type 2 PBPs. These types
                     of transporters consist of a PBP, two TMs, and two
                     cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
                     cd06261"
                     /db_xref="CDD:119394"
     misc_feature    order(173367..173372,173379..173384,173397..173399,
                     173427..173438,173442..173471,173478..173483,
                     173487..173489,173568..173573,173577..173579,
                     173583..173585,173592..173597,173601..173603,
                     173613..173618,173625..173627,173676..173678,
                     173718..173723,173730..173732,173751..173762,
                     173769..173774,173820..173825,173853..173858)
                     /locus_tag="O3Y_00780"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(173445..173489,173751..173768)
                     /locus_tag="O3Y_00780"
                     /note="conserved gate region; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(173487..173489,173553..173555,173769..173771,
                     173814..173816,173823..173825,173853..173855)
                     /locus_tag="O3Y_00780"
                     /note="putative PBP binding loops; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(173628..173666,173682..173687,173697..173699)
                     /locus_tag="O3Y_00780"
                     /note="ABC-ATPase subunit interface; other site"
                     /db_xref="CDD:119394"
     gene            174141..175088
                     /locus_tag="O3Y_00785"
                     /db_xref="GeneID:11913108"
     CDS             174141..175088
                     /locus_tag="O3Y_00785"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332034.1"
                     /db_xref="GI:379740065"
                     /db_xref="GeneID:11913108"
                     /translation="MPKWILCCNLSVALLLFAPIASAESDYLCDAQQAAVNQLPVLDA
                     ACPIGDGLWGKKPKRGDSLFWIQCGMLSKPMPLATVKTLYEHISTDIWVKPEPKGARC
                     LIGPYSDFALASKELKKVKKLATFEQAFIRQVVKTSAQQPVMKAKPTTAAVAPAANTA
                     VSEASAPKPASKPKSEEKSAPTVVPAAVPTKPVAKLISTPKPSGNSGFVLRQQVKVGS
                     QTFALPYSDNPKVQFYMEHDQAWNRLDYDAAQIVCRDLGMRLATEQEWSALLQSKQMQ
                     QYQWPVQLPYWGEGRKGMFTTGKVNVLKGSSLLNVVCVK"
     misc_feature    <174630..>174797
                     /locus_tag="O3Y_00785"
                     /note="putative acetyl-CoA carboxylase biotin carboxyl
                     carrier protein subunit; Validated; Region: PRK05641"
                     /db_xref="CDD:235540"
     gene            complement(175341..176930)
                     /locus_tag="O3Y_00790"
                     /db_xref="GeneID:11913109"
     CDS             complement(175341..176930)
                     /locus_tag="O3Y_00790"
                     /note="COG2131 Deoxycytidylate deaminase"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxycytidylate deaminase-likeprotein"
                     /protein_id="YP_005332035.1"
                     /db_xref="GI:379740066"
                     /db_xref="GeneID:11913109"
                     /translation="MNKSSAKKILSTVPSPTKSNSSSSNDLQKRILERRSRELVIGLC
                     GAIGSGVKALKESLVSSLETYGYEVVDIRISKIISEKTQTSLDGLSAFKRYNRLQDLG
                     NSLRETHKSSILAACAIEEIALERTLICQNEIDETSEENDNEPSLIKTTKKIAYIIDQ
                     LKHPDEIKFLRSVYPRNFYLIGLIRTEGERRLNLEEEKISPSEIDTLMRRDRKDVSHG
                     QQVEKSLFNADYFIHNIHNQKQMLDKSVERFIKLVHGINGISPTIDEIGMHAAYSAAL
                     RSACLSRQVGAAILDNQGNIISTGCNDVPSFGGGLYNSNSLADFRCVHTGRCSNDKHK
                     DILKEEITDILKKSITNTLELKEIVNQITSETKIKTLIEYSRAVHAEMDSLIALARNN
                     KETSVDKTLYVTTYPCHNCARHIVAAGIKKVVYVEPYEKSLAMKLHDDSISDNADAKN
                     KVCFLPFEGVSSRRYEVFFQMHGDRKDDKTGKVLNINIQDSYHADSEFLDNYAEMEAK
                     IAQSVNALLNVPSSEEESIQD"
     misc_feature    complement(176169..>176489)
                     /locus_tag="O3Y_00790"
                     /note="hypothetical protein; Provisional; Region:
                     PRK01184"
                     /db_xref="CDD:234914"
     misc_feature    complement(175602..176141)
                     /locus_tag="O3Y_00790"
                     /note="Deoxycytidylate deaminase domain. Deoxycytidylate
                     deaminase catalyzes the deamination of dCMP to dUMP,
                     providing the nucleotide substrate for thymidylate
                     synthase. The enzyme binds Zn++, which is required for
                     catalytic activity. The activity of the...; Region:
                     deoxycytidylate_deaminase; cd01286"
                     /db_xref="CDD:238613"
     misc_feature    complement(order(175698..175700,175707..175712,
                     175788..175790,175794..175796,176022..176024))
                     /locus_tag="O3Y_00790"
                     /note="catalytic motif [active]"
                     /db_xref="CDD:238613"
     misc_feature    complement(order(175698..175700,175707..175709,
                     175788..175790,175794..175796))
                     /locus_tag="O3Y_00790"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:238613"
     gene            complement(177006..177239)
                     /locus_tag="O3Y_00795"
                     /db_xref="GeneID:11913110"
     CDS             complement(177006..177239)
                     /locus_tag="O3Y_00795"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332036.1"
                     /db_xref="GI:379740067"
                     /db_xref="GeneID:11913110"
                     /translation="MRTLLFANHTLVNGYFGGKQMITSIHEYRNASNSDKNRLSHNSK
                     SDTSGNVVLFSQKDAKKEKARANLLRAAQKIHW"
     gene            complement(177448..177756)
                     /locus_tag="O3Y_00800"
                     /db_xref="GeneID:11913111"
     CDS             complement(177448..177756)
                     /locus_tag="O3Y_00800"
                     /note="COG1396 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332037.1"
                     /db_xref="GI:379740068"
                     /db_xref="GeneID:11913111"
                     /translation="MSFQNPIPLRLKEARKKAKLSQKALGVRIGMDESSASPRMNQYE
                     KGKHTPDVQTLKLIADELGVPLNYFFCEDDESAELACLIHRMSPEEKKNLLKDLISKK
                     "
     misc_feature    complement(<177523..177729)
                     /locus_tag="O3Y_00800"
                     /note="Predicted transcriptional regulators
                     [Transcription]; Region: HipB; COG1396"
                     /db_xref="CDD:224314"
     misc_feature    complement(177550..177729)
                     /locus_tag="O3Y_00800"
                     /note="Helix-turn-helix XRE-family like proteins.
                     Prokaryotic DNA binding proteins belonging to the
                     xenobiotic response element family of transcriptional
                     regulators; Region: HTH_XRE; cd00093"
                     /db_xref="CDD:238045"
     misc_feature    complement(order(177622..177624,177709..177711,
                     177721..177723))
                     /locus_tag="O3Y_00800"
                     /note="non-specific DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238045"
     misc_feature    complement(order(177625..177627,177712..177714))
                     /locus_tag="O3Y_00800"
                     /note="salt bridge; other site"
                     /db_xref="CDD:238045"
     misc_feature    complement(order(177619..177624,177634..177636,
                     177655..177657,177688..177693))
                     /locus_tag="O3Y_00800"
                     /note="sequence-specific DNA binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238045"
     gene            177871..178422
                     /locus_tag="O3Y_00805"
                     /db_xref="GeneID:11913112"
     CDS             177871..178422
                     /locus_tag="O3Y_00805"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332038.1"
                     /db_xref="GI:379740069"
                     /db_xref="GeneID:11913112"
                     /translation="MKISAEMYKLLIERTLDGFSVIELRDEFIVIKDSLIDPDEAYKK
                     VYRQILRFIKKGWLNGEGSGRQKRYFQTDTFKALHAEPKSENVDIEIVLNQDYSVLVS
                     ERNQYKGELEIVLGEIDEYQSLNIRFPELEPKLITLLDEAKERSACLLGKVNGLTNVL
                     KVLSGQKIVHQKFKTKALLFERT"
     gene            178909..179157
                     /locus_tag="O3Y_00810"
                     /db_xref="GeneID:11913113"
     CDS             178909..179157
                     /locus_tag="O3Y_00810"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332039.1"
                     /db_xref="GI:379740070"
                     /db_xref="GeneID:11913113"
                     /translation="MLQRSQKRLLVRLYHKLQPPGRLALKWKAERLKRCRALNTVKKR
                     KLSLLLFYLNQAKIGRKKYMSRKDLLTDIADTLKSMVQ"
     gene            179336..180403
                     /locus_tag="O3Y_00815"
                     /db_xref="GeneID:11913114"
     CDS             179336..180403
                     /locus_tag="O3Y_00815"
                     /note="COG3621 Patatin"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-likeprotein"
                     /protein_id="YP_005332040.1"
                     /db_xref="GI:379740071"
                     /db_xref="GeneID:11913114"
                     /translation="MPNPPEYEHLKNQVRILSLNGGGARGLFTISLLAEIERIIEEKQ
                     GINGFKVGDYFDLITGTSIGGILALGLAYGKSARELEDVFRKQAGYIFPEQKYPRFFP
                     VFRRRYRLARGPLYDSKPLAKTIASMVGEESTFNDLKCRVLIPTVNLSTGKPQFFKTP
                     HNPEFHRDGRIKLIDAALATSAAPTYFAPHYCVDLDSYFADGGLVANNPSFIGLHEVF
                     RDMATDFPEAKVSDVKILNVGTLGEEYSLSPSSLAGKSGYLGLWGMGERLVLSAMAAN
                     QELHKAMLLREFATHDAIGNFVRLDNNIPHEAASDITLDNASASSLSNLASRGRQLAT
                     EEFTKNKALADFFKVPARKFK"
     misc_feature    179381..180253
                     /locus_tag="O3Y_00815"
                     /note="Patatin-like phospholipase; includes PNPLA8,
                     PNPLA9, and Pat17; Region: Pat17_PNPLA8_PNPLA9_like;
                     cd07199"
                     /db_xref="CDD:132838"
     misc_feature    order(179399..179404,179408..179410,179519..179521,
                     179936..179938)
                     /locus_tag="O3Y_00815"
                     /note="active site"
                     /db_xref="CDD:132838"
     misc_feature    179513..179527
                     /locus_tag="O3Y_00815"
                     /note="nucleophile elbow; other site"
                     /db_xref="CDD:132838"
     gene            180423..181727
                     /locus_tag="O3Y_00820"
                     /db_xref="GeneID:11913115"
     CDS             180423..181727
                     /locus_tag="O3Y_00820"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332041.1"
                     /db_xref="GI:379740072"
                     /db_xref="GeneID:11913115"
                     /translation="MTWNFHQYYTNRNDGLMGKLVLTDEEKNNLKALRKIIRLRTRDV
                     FEEAKGIAKAVKKSALTFEIIQEKVSTTQIKHLSDSEQREVAKLIYEMDDDARDEFLG
                     LTPRFWTQGSFQYDTLNRPFQPGQEMDIDDGTYMPMPIFESEPKIGHSLLILLVDASL
                     KSLVAENHGWKFEAKQTCGRIKIEAEKTHIDVPMYAIPKDEFQKKQIALEANRSFVKG
                     AIFESYVADSITDDSETYELDSENVNLALREGDRKWINSDPKIVEDWFNDSCIRIGKH
                     LRKVCRFMKAWRDAQWDVGGPSSISLMAATVNILDSVAHDASDLGETMKIIAKHLPSE
                     FARGVESPDSTDEKPLFPPSYKHGPREMDIMSKLERLPEILSSAESADSKSEALKKIN
                     MAFGNRVTNSELIVLAKALPAFAQEPSSASKPEKISSTMVSG"
     gene            181730..183484
                     /locus_tag="O3Y_00825"
                     /db_xref="GeneID:11913116"
     CDS             181730..183484
                     /locus_tag="O3Y_00825"
                     /note="COG0476 Dinucleotide-utilizing enzymes involved in
                     molybdopterin and thiamine biosynthesis family 2"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332042.1"
                     /db_xref="GI:379740073"
                     /db_xref="GeneID:11913116"
                     /translation="MKQELHHTLLGCGFRYTPAKQMPKGILLDTKSRRKGYYVKEYST
                     KGGVFVIALVLWNDPHIQLPFAYILQQPEQYKGRLLPHINFGFCLCYVTQMEADWNSN
                     DLKSTYQDVDEQIQLTLDNSVASVESGTSNDVELEGEFSAYWQSEEELYLLAKPSRKA
                     QLKAHLVEAELSSGSIRREYVAACSEQSEELVKWLNQRKFDESSLQEVSITTHCISVK
                     PNRLAGVNWPPSCLREVLSWLKLVDYSAHARTVTLLMAKRTKRHILLFDVEGQDELAV
                     YLELNLDVIGKRYFGRNAARKRNINNEAALLGGKFVSANFKRLGVTRADRDTLLSRNQ
                     SRPDVGNLSQKRIALIGCGTIGGYLAELLLRSGAGCGENYFHLYDNDSFKPHNFARHS
                     LTAHNFGLAKSIALANSLKEAVHIAQSIKGIDRQFPIQADVLSKYDIVIDATGRPPVS
                     KRLAAVARTLIADIRPVLIHAFNDGNGRASKVLVDDGRCCYGCMMADPAVYRNNIDLR
                     FEGIDLAKEKHISCGSTYTPYDAAVSHITAALAQEAVLNTLEHTLPWNYSEHMLDGSR
                     SKKPRTLKRFSGCNICDE"
     misc_feature    181763..182188
                     /locus_tag="O3Y_00825"
                     /note="Prokaryotic E2 family B; Region: Prok-E2_B;
                     pfam14461"
                     /db_xref="CDD:258606"
     misc_feature    182765..183181
                     /locus_tag="O3Y_00825"
                     /note="Superfamily of activating enzymes (E1) of the
                     ubiquitin-like proteins. This family includes classical
                     ubiquitin-activating enzymes E1, ubiquitin-like (ubl)
                     activating enzymes and other mechanistic homologes, like
                     MoeB, Thif1 and others. The common...; Region:
                     E1_enzyme_family; cd01483"
                     /db_xref="CDD:238760"
     misc_feature    order(182780..182782,182786..182788,182792..182794,
                     182864..182866,182870..182872,182897..182899,
                     182933..182935,183056..183058,183074..183076)
                     /locus_tag="O3Y_00825"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238760"
     misc_feature    order(182792..182794,183077..183079,183140..183145,
                     183161..183163)
                     /locus_tag="O3Y_00825"
                     /note="substrate interface [chemical binding]; other site"
                     /db_xref="CDD:238760"
     gene            183477..183944
                     /locus_tag="O3Y_00830"
                     /db_xref="GeneID:11913117"
     CDS             183477..183944
                     /locus_tag="O3Y_00830"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332043.1"
                     /db_xref="GI:379740074"
                     /db_xref="GeneID:11913117"
                     /translation="MSDVELVFKDESDCLVVIMGHVVTRLLSYRQLHHLTPESAGVLI
                     GERRGQHLVVCDISEPGSGDIRQRCRVDRRGVHHQSRVNEAFERSAGTHLYLGEWHTH
                     PEDRPFPSATDRHSWRRNIVSDESMLLLIVGRKDFWLGKKERELITVFKKIES"
     misc_feature    183537..183929
                     /locus_tag="O3Y_00830"
                     /note="integrative and conjugative element protein, VC0181
                     family; Region: ICE_VC0181; TIGR02256"
                     /db_xref="CDD:131309"
     gene            complement(183955..184386)
                     /locus_tag="O3Y_00835"
                     /db_xref="GeneID:11913118"
     CDS             complement(183955..184386)
                     /locus_tag="O3Y_00835"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332044.1"
                     /db_xref="GI:379740075"
                     /db_xref="GeneID:11913118"
                     /translation="MSKSQITKVELEQALGRILSGKTHRVDPARKISVKAVEEEAGLG
                     DGSAYYYKDIVQKIKESAIRNSPKIRNQNAYEDKISSLRDRLNKEIKLKEKYREQVED
                     LKEQLSSMASQHNQLTLMIQQYQYKISEFESDIEQLPKYSE"
     misc_feature    complement(<183997..>184149)
                     /locus_tag="O3Y_00835"
                     /note="flagellar hook-associated protein FlgK; Validated;
                     Region: flgK; PRK05683"
                     /db_xref="CDD:235558"
     gene            complement(184358..186469)
                     /locus_tag="O3Y_00840"
                     /db_xref="GeneID:11913119"
     CDS             complement(184358..186469)
                     /locus_tag="O3Y_00840"
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase"
                     /protein_id="YP_005332045.1"
                     /db_xref="GI:379740076"
                     /db_xref="GeneID:11913119"
                     /translation="MTPLFELPKNILKENLSEYKNIVQLYSDGKLKKLDDVVVTKNFD
                     GSPNSHFGDEEWDFRAYLDARIVYKKRIVFSKIVSDDLAREMKLICFCWLYIAGHHRK
                     GAVIKPSTLIARFSKLSILYKFIDSKGFQSINSLSSEIVFSEFCEYLKGQNYSSGQVE
                     GIYNALMHVKKAARYLPIQFEIPQGRTQCKFGREITGRLYEGKNQFYAIPTRLMEKIY
                     RYCFDVVETYHPYKEEIHELLYDMRQNYEEGKRRVDDKIQSGIWQWISEESNEYRVEV
                     NKHQPASYSSIIDAHIKDTHLESLLPKSALRIQGTIIEIQTICFIVCGALTGMRRSEL
                     FCLHSNSFKEKEMYGKKYYTLQSEQHKFSQGRGKMAEWVTTKFTQKAIELAEAISRYM
                     RIQLLEDDDPMSVHNSSCLWLGQGRKSQKPIIRQDNNMRTHFLKICEKAGALITEDDL
                     DEFRVINQNREPNNADERLKVGNVWPLTTHQLRRTFAVFSKRHNLCHDIAIKEQFKHL
                     DLPTTEWYGEGGLASKIKALQIDTELQSFLNDVIQESTTQKIHEWYKGCDSGQLMGHM
                     AGSINKNRISLHKKYKSWDAINEHVKAGRLTLVGTLHSYCMAGYECQMHKVSSPANCM
                     SCENQLIDKEKAENWDKRYQWVCKQVTDMEAIGSLTSSMYSHFITQIRAAEKVLHKFQ
                     IPFTRFEIGNDRYEQIPNYEG"
     gene            complement(186479..188167)
                     /locus_tag="O3Y_00845"
                     /db_xref="GeneID:11913120"
     CDS             complement(186479..188167)
                     /locus_tag="O3Y_00845"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332046.1"
                     /db_xref="GI:379740077"
                     /db_xref="GeneID:11913120"
                     /translation="MTYTPPKLTIKLRTGIKQTFTYDFTRFFYKGVAFKRDLQRAEPA
                     HRDADVLRWYRIFTETNEYSDLTKQSYLRDFAKYVRFCDTKRLNPESSAAVESWERHL
                     IEQVRISSMNVNSARKMISCSKKCLEMLGNPSSEWFSPYGLFRSEPNPTQGYSDRELS
                     SLIKIINSFFRQVSKQIMENPSIHLNASTNKRTATFTYNNHTHEIASPITKCFSAAYF
                     MLSYYTWGNTTVLLNMTKPKEKIFDGGKWFEQSVLKPRANKYVSISIGDNGTFHVPKI
                     ALRFFEQLLQLSSLISSDPHLLWQTKRDHIAPLEQGHIQTFSKWLYETFDLKSDDGEP
                     LRPMASKFRASGSCRYLAKTGNTTETALLLGNTPYTLSKHYSSGNQVENQKQLLAATH
                     TIEGAARCSDINSAKEFAKKELGVEVLPYEEFLAKYADKHGEKTIIGTGCKNVYSSQA
                     DKYRRRNHFSPKDFNVDHLACSDIHNCFDCENQVIIESVEDIWCLLSYRESIIDSKVH
                     HLNEQHFNKNYSDLLNSINRIVFTIHPKVKRLAEKKLQNEGRHPLWPEGINIDF"
     gene            complement(188164..189378)
                     /locus_tag="O3Y_00850"
                     /db_xref="GeneID:11913121"
     CDS             complement(188164..189378)
                     /locus_tag="O3Y_00850"
                     /note="COG0582 Integrase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332047.1"
                     /db_xref="GI:379740078"
                     /db_xref="GeneID:11913121"
                     /translation="MVTVVNSNNFDVPRIYPPSSKSTSIHLTGFPTFYSKDHEYLLPV
                     NLWFNYLVNIRKAVDITASVRALKRYWQFLETNNYSWDNFPANDYLKPTYRFRNDDLL
                     KAARSGEIAFSTASMYILHVISTTIKFYEWAAHERFITFTEENKPFNYQIVHIANSGM
                     MSHNNPRFTVRSTDLRIRKPARNEQQKLNPLSQQELLFFADCLKECSDEFIIHQLLQI
                     QSGLRVEEACTFPFSIVEMPNPHIHRYEVEIGIHNGVHTKFNKTRKVEIPNQLMRKMY
                     DYSVSERRLKREKKTDGVNKTLLLNNLGNPLCSNNIQQHFRRLRHHIQNKHNIVFSHR
                     THDLRATYGTYRLDSLLDHLPVGDALALIMGWMGHKDDKTTWKYLRYLRKEKANQNAI
                     VMLDQILEEAML"
     misc_feature    complement(188239..188787)
                     /locus_tag="O3Y_00850"
                     /note="DNA breaking-rejoining enzymes,
                     intergrase/recombinases, C-terminal catalytic domain. The
                     tyrosine recombinase/integrase family share the same
                     catalytic domain containing six conserved active site
                     residues. The best-studied members of this diverse
                     family...; Region: INT_REC_C; cd01182"
                     /db_xref="CDD:238587"
     misc_feature    complement(order(188245..188247,188371..188376,
                     188605..188607,188707..188712))
                     /locus_tag="O3Y_00850"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238587"
     misc_feature    complement(order(188245..188247,188272..188274,
                     188362..188364,188371..188373,188605..188607,
                     188710..188712))
                     /locus_tag="O3Y_00850"
                     /note="Int/Topo IB signature motif; other site"
                     /db_xref="CDD:238587"
     misc_feature    complement(order(188245..188247,188272..188274,
                     188362..188364,188371..188373,188710..188712))
                     /locus_tag="O3Y_00850"
                     /note="active site"
                     /db_xref="CDD:238587"
     misc_feature    complement(order(188245..188247,188362..188364,
                     188710..188712))
                     /locus_tag="O3Y_00850"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:238587"
     gene            complement(189467..190819)
                     /locus_tag="O3Y_00855"
                     /db_xref="GeneID:11913122"
     CDS             complement(189467..190819)
                     /locus_tag="O3Y_00855"
                     /EC_number="1.8.1.7"
                     /note="COG1249 Pyruvate/2-oxoglutarate dehydrogenase
                     complex, dihydrolipoamide dehydrogenase (E3) component,
                     and related enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione reductase"
                     /protein_id="YP_005332048.1"
                     /db_xref="GI:379740079"
                     /db_xref="GeneID:11913122"
                     /translation="MATHFDYLCIGGGSGGIASANRAAMYGAKVALIEAKDLGGTCVN
                     VGCVPKKVMWHGAQIAEAMHLYAEDYGFDVDVKNFNWAKLVESRQAYIGRIHQSYDRV
                     LGNNKVHVIKGFAKFVDAKTVEVNGELYTADHILIAVGGRPSIPNIPGAEYGIDSNGF
                     FELSEQPKRVAVIGAGYIAVEIAGVLNALGTETHLFCRKESPLRSFDPMIIETLVEVM
                     NSEGPQLHTHSVPKQVVKEADGSLTLHLENGQTYNVDTLIWAIGRHPATDAINLAATG
                     VATNEQGYIKVDEFQNTNVAGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNKLNAK
                     MDYQLVPTVVFSHPPIGTIGLTEPQAIAQYGAENVKVYKSSFTAMYTAVTSHRQPCKM
                     KLVCAGPEETVVGLHGIGFAVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEEFVTM
                     "
     misc_feature    complement(189470..190819)
                     /locus_tag="O3Y_00855"
                     /note="glutathione reductase; Validated; Region: PRK06116"
                     /db_xref="CDD:235701"
     misc_feature    complement(190217..>190444)
                     /locus_tag="O3Y_00855"
                     /note="Short-chain dehydrogenases/reductases (SDR);
                     Region: SDR; cl21454"
                     /db_xref="CDD:271874"
     misc_feature    complement(190073..190315)
                     /locus_tag="O3Y_00855"
                     /note="Pyridine nucleotide-disulphide oxidoreductase;
                     Region: Pyr_redox; pfam00070"
                     /db_xref="CDD:249559"
     misc_feature    complement(189470..189802)
                     /locus_tag="O3Y_00855"
                     /note="Pyridine nucleotide-disulphide oxidoreductase,
                     dimerization domain; Region: Pyr_redox_dim; pfam02852"
                     /db_xref="CDD:251571"
     gene            complement(190925..191764)
                     /locus_tag="O3Y_00860"
                     /db_xref="GeneID:11913123"
     CDS             complement(190925..191764)
                     /locus_tag="O3Y_00860"
                     /note="COG2961 Protein involved in catabolism of external
                     DNA"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA processing protein"
                     /protein_id="YP_005332049.1"
                     /db_xref="GI:379740080"
                     /db_xref="GeneID:11913123"
                     /translation="MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSG
                     VGRYDLTHEWSEKTGEYKQGIARIWQQDNIPAELDSYLDAIRQLNQGETLRYYPGSPR
                     VARAHLREQDRMVLTELHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGL
                     VLIDPPYELAKEYRDVVRAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRK
                     ILQIELGVAPDTNERGMTASGMIVINPPWTLESQMQTILPFLKQAIAPATGHYKVEWV
                     VPE"
     misc_feature    complement(190928..191761)
                     /locus_tag="O3Y_00860"
                     /note="Protein involved in catabolism of external DNA
                     [General function prediction only]; Region: ComJ; COG2961"
                     /db_xref="CDD:225509"
     gene            192044..194086
                     /locus_tag="O3Y_00865"
                     /db_xref="GeneID:11913124"
     CDS             192044..194086
                     /locus_tag="O3Y_00865"
                     /note="COG0339 Zn-dependent oligopeptidases"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="YP_005332050.1"
                     /db_xref="GI:379740081"
                     /db_xref="GeneID:11913124"
                     /translation="MSNPLLTFTDLPPFSAIKPEHVKPAVEQAIADCRHTIDKVLAEN
                     PQPSWESVIAPIEEVDDRLSRIWSPVSHMNSVVNSDELREAYESCLPLLSEYSTWVGQ
                     HKGLFEAYKTIKESAEFAKLDRAQQKNISDSLRDFELSGIGLPLQEQKRYGEISKRMS
                     ELGSKFSNNVLDATMGWTKQITDVNLLAGMPESALAAAQAAAEAKGLEGYLLTLDIPS
                     YLPVMTYCDNQALRKEVYEAYVTRASDRGPNAGKWDNSEIIAEQLKLRHEIARMLGFS
                     TYSEKSLATKMAQTTDQVLGFLNDLANKAKPQGEREVEELRQFAESEFGVKQLELWDI
                     AYYSEKQKQHLFEISDEELRPYFPEQKVVNGLFEVLSRLFGMQVKERQGVDVWHESVR
                     FFDIFDAQGTLRGSFYLDLYAREHKRGGAWMDECRVRRTTDSGALQTPVAYLTCNFNR
                     PVGDKPALFTHDEVTTLFHEFGHGIHHMLTQVEVGAVSGINGVPWDAVELPSQFLENW
                     CWQEEALAFISGHYQTGEPLPKAMLDKMLAAKNFQSAMFILRQLEFGLFDFTLHTTYD
                     PEVGPKVLETLAEVKKKVAVLPGLEWNRFSHSFSHIFAGGYSAGYYSYLWAEVLSADA
                     FSRFEEEGIFNRETGQSFLNNILEMGGSEEPMELFKRFRGREPQIDALLRHAGIAA"
     misc_feature    192044..194083
                     /locus_tag="O3Y_00865"
                     /note="Zn-dependent oligopeptidases [Amino acid transport
                     and metabolism]; Region: Dcp; COG0339"
                     /db_xref="CDD:223416"
     misc_feature    192101..194077
                     /locus_tag="O3Y_00865"
                     /note="Peptidase family M3 dipeptidyl carboxypeptidase
                     (DCP); Region: M3A_DCP; cd06456"
                     /db_xref="CDD:188995"
     misc_feature    order(193304..193312,193448..193453,193460..193462,
                     193538..193540,193547..193549,193694..193696,
                     193820..193825,193841..193846,193856..193864,
                     193874..193876,193883..193885)
                     /locus_tag="O3Y_00865"
                     /note="active site"
                     /db_xref="CDD:188995"
     misc_feature    order(193448..193450,193460..193462,193538..193540)
                     /locus_tag="O3Y_00865"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188995"
     gene            194224..196395
                     /gene="uvrD"
                     /locus_tag="O3Y_00870"
                     /db_xref="GeneID:11913125"
     CDS             194224..196395
                     /gene="uvrD"
                     /locus_tag="O3Y_00870"
                     /note="COG0210 Superfamily I DNA and RNA helicases"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent helicase II"
                     /protein_id="YP_005332051.1"
                     /db_xref="GI:379740082"
                     /db_xref="GeneID:11913125"
                     /translation="MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRI
                     AWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAH
                     YLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHI
                     NAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHIL
                     VDEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNT
                     IRLEQNYRSTKTILEASNTLIANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVV
                     SKIKGWQEQGGTLTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDAL
                     SYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVL
                     TGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIEN
                     LEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLE
                     FPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQD
                     KYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFSQTVVKESFNETGFNLGSRVRHP
                     KFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARLEKV"
     misc_feature    194227..196392
                     /gene="uvrD"
                     /locus_tag="O3Y_00870"
                     /note="DNA-dependent helicase II; Provisional; Region:
                     uvrD; PRK11773"
                     /db_xref="CDD:236976"
     misc_feature    194272..194508
                     /gene="uvrD"
                     /locus_tag="O3Y_00870"
                     /note="Part of AAA domain; Region: AAA_19; pfam13245"
                     /db_xref="CDD:257601"
     misc_feature    <195406..195972
                     /gene="uvrD"
                     /locus_tag="O3Y_00870"
                     /note="Inactivated superfamily I helicase [DNA
                     replication, recombination, and repair]; Region: COG3893"
                     /db_xref="CDD:226409"
     misc_feature    <195892..196062
                     /gene="uvrD"
                     /locus_tag="O3Y_00870"
                     /note="UvrD-like helicase C-terminal domain; Region:
                     UvrD_C_2; pfam13538"
                     /db_xref="CDD:257857"
     gene            complement(197140..197808)
                     /locus_tag="O3Y_00875"
                     /db_xref="GeneID:11913126"
     CDS             complement(197140..197808)
                     /locus_tag="O3Y_00875"
                     /note="COG1280 Putative threonine efflux protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332052.1"
                     /db_xref="GI:379740083"
                     /db_xref="GeneID:11913126"
                     /translation="MNEMSILATLAGVHFIALLSPGPDVALVVQNATQHGRKTGVMIA
                     LGLSCGILVHLILSLSGISYLVKQQPMLFNLLQLAGGSYLLYLGAGALQSVMAQKNAS
                     TPTHSPAPSILGNRRQAFTKGMMTNLLNPKALVFFVSLLSSLIPASMSVSGKVSAAAI
                     LVGLSLTWFSCLAWLLTTSAMQQRMQRITRSVDSICAAVFILAGGVILWQASRAIAQT
                     FGWL"
     misc_feature    complement(197173..197802)
                     /locus_tag="O3Y_00875"
                     /note="Putative threonine efflux protein [Amino acid
                     transport and metabolism]; Region: RhtB; COG1280"
                     /db_xref="CDD:224199"
     gene            complement(197883..198695)
                     /locus_tag="O3Y_00880"
                     /db_xref="GeneID:11913127"
     CDS             complement(197883..198695)
                     /locus_tag="O3Y_00880"
                     /note="COG2207 AraC-type DNA-binding domain-containing
                     proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC/XylS family transcriptional regulator"
                     /protein_id="YP_005332053.1"
                     /db_xref="GI:379740084"
                     /db_xref="GeneID:11913127"
                     /translation="MVSMDTVNYRPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQ
                     GVQRFYHQGAWHQVGQGGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQ
                     IEQVIGFEQLIVQDPTLFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQ
                     PTVKPLGQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWL
                     RRLRLEQAMKLLQSGKPGTDVAYQVGFYDQAHFSKAFKATYGLSPSLITRFS"
     misc_feature    complement(198258..198656)
                     /locus_tag="O3Y_00880"
                     /note="AraC-like ligand binding domain; Region:
                     AraC_binding; pfam02311"
                     /db_xref="CDD:145456"
     misc_feature    complement(198039..198164)
                     /locus_tag="O3Y_00880"
                     /note="Bacterial regulatory helix-turn-helix proteins,
                     AraC family; Region: HTH_AraC; pfam00165"
                     /db_xref="CDD:249644"
     misc_feature    complement(197904..198143)
                     /locus_tag="O3Y_00880"
                     /note="helix_turn_helix, arabinose operon control protein;
                     Region: HTH_ARAC; smart00342"
                     /db_xref="CDD:197666"
     misc_feature    complement(197892..>197987)
                     /locus_tag="O3Y_00880"
                     /note="Bacterial regulatory helix-turn-helix proteins,
                     AraC family; Region: HTH_AraC; pfam00165"
                     /db_xref="CDD:249644"
     gene            complement(198843..200597)
                     /locus_tag="O3Y_00885"
                     /db_xref="GeneID:11913128"
     CDS             complement(198843..200597)
                     /locus_tag="O3Y_00885"
                     /note="COG0405 Gamma-glutamyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltranspeptidase"
                     /protein_id="YP_005332054.1"
                     /db_xref="GI:379740085"
                     /db_xref="GeneID:11913128"
                     /translation="MNWTHTPLALSALMFAMAAQATPNQATDAVAPEQATGFEHKSLV
                     KAKNWMVTAANPLASEAGASILRQGGNAIDAMVTTQLMLGLVEPQSSGIGGGSFLVYW
                     DAKKKALTTFDGRETAPLNATPELFLDSTGQPMKFYDAVVGGRSVGTPGTVKLLWETH
                     RQYGKLEWARLIEPVAKLAEQGFEVSPRLAALIAEDKERLGRFPATKAYFFDAQGEPL
                     TAGTLLKNPDYAATLRAIAQQGASAFYQGDIAKDIIATVQNAPGNPGVLAQQDFDTYQ
                     VKQRAPVCAAYQSYQVCGMGLPSSGGLTVGQILALTEQYDLKGWGAQDVKSWQVLGDA
                     SQLAFADRGLYMADQDYVPVPTQGLLDKTYLAERAKLIQPGKALTSAPAGNPPWHHAQ
                     LRSPDQSIELPSTSHFNIVDREGNVVSFTTSIENAFGSRLLVRGFLLNNELTDFSFAT
                     QSEGRPIANRLEPGKRPRSSMAPTIVLQDNQPYLAIGSPGGSRIIGYVAQAIVAHTQW
                     GMNIQAAINQPHVLNRFGEIELEQGTSAEQFKPALESLGAKVGIKELNSGLHAIRITA
                     QGLEGAADPRREGVAIGE"
     misc_feature    complement(198849..200480)
                     /locus_tag="O3Y_00885"
                     /note="Gamma-glutamyltransferase [Amino acid transport and
                     metabolism]; Region: Ggt; COG0405"
                     /db_xref="CDD:223482"
     gene            complement(200771..201673)
                     /locus_tag="O3Y_00890"
                     /db_xref="GeneID:11913129"
     CDS             complement(200771..201673)
                     /locus_tag="O3Y_00890"
                     /note="COG2962 Predicted permeases"
                     /codon_start=1
                     /transl_table=11
                     /product="RarD protein"
                     /protein_id="YP_005332055.1"
                     /db_xref="GI:379740086"
                     /db_xref="GeneID:11913129"
                     /translation="MTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHR
                     VVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHML
                     DASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALA
                     TSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLL
                     VCAGVVTTLPLLCFTGAAARLKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFA
                     FIWSALVIFSVDGLKAGHAARRAR"
     misc_feature    complement(200783..201664)
                     /locus_tag="O3Y_00890"
                     /note="Predicted permeases [General function prediction
                     only]; Region: RarD; COG2962"
                     /db_xref="CDD:225510"
     misc_feature    complement(201248..201613)
                     /locus_tag="O3Y_00890"
                     /note="EamA-like transporter family; Region: EamA;
                     pfam00892"
                     /db_xref="CDD:250209"
     gene            201840..203675
                     /locus_tag="O3Y_00895"
                     /db_xref="GeneID:11913130"
     CDS             201840..203675
                     /locus_tag="O3Y_00895"
                     /note="COG0514 Superfamily II DNA helicase"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="YP_005332056.1"
                     /db_xref="GI:379740087"
                     /db_xref="GeneID:11913130"
                     /translation="MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGR
                     DSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLMKDQVDQLKANGVAAECVNSTL
                     AREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
                     FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRY
                     MLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDAD
                     ERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG
                     LPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYF
                     GEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRI
                     REHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITRNSTLQLTEEARPLLRGE
                     MNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYVVFSDAT
                     LIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG"
     misc_feature    201849..203672
                     /locus_tag="O3Y_00895"
                     /note="ATP-dependent DNA helicase RecQ; Provisional;
                     Region: PRK11057"
                     /db_xref="CDD:182933"
     misc_feature    201969..202397
                     /locus_tag="O3Y_00895"
                     /note="DEAD-like helicases superfamily. A diverse family
                     of proteins involved in ATP-dependent RNA or DNA
                     unwinding. This domain contains the ATP-binding region;
                     Region: DEXDc; cd00046"
                     /db_xref="CDD:238005"
     misc_feature    201996..202010
                     /locus_tag="O3Y_00895"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238005"
     misc_feature    202284..202295
                     /locus_tag="O3Y_00895"
                     /note="putative Mg++ binding site [ion binding]; other
                     site"
                     /db_xref="CDD:238005"
     misc_feature    202479..202865
                     /locus_tag="O3Y_00895"
                     /note="Helicase superfamily c-terminal domain; associated
                     with DEXDc-, DEAD-, and DEAH-box proteins, yeast
                     initiation factor 4A, Ski2p, and Hepatitis C virus NS3
                     helicases; this domain is found in a wide variety of
                     helicases and helicase related proteins; may...; Region:
                     HELICc; cd00079"
                     /db_xref="CDD:238034"
     misc_feature    order(202578..202589,202647..202652,202725..202733)
                     /locus_tag="O3Y_00895"
                     /note="nucleotide binding region [chemical binding]; other
                     site"
                     /db_xref="CDD:238034"
     misc_feature    order(202749..202751,202812..202814,202824..202826,
                     202833..202835)
                     /locus_tag="O3Y_00895"
                     /note="ATP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238034"
     misc_feature    203079..203354
                     /locus_tag="O3Y_00895"
                     /note="This DNA-binding domain is found in the RecQ
                     helicase among others and has a helix-turn-helix
                     structure; Region: RQC; smart00956"
                     /db_xref="CDD:214936"
     misc_feature    203445..203648
                     /locus_tag="O3Y_00895"
                     /note="HRDC domain; Region: HRDC; pfam00570"
                     /db_xref="CDD:249966"
     gene            203668..203967
                     /locus_tag="O3Y_00900"
                     /db_xref="GeneID:11913131"
     CDS             203668..203967
                     /locus_tag="O3Y_00900"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332057.1"
                     /db_xref="GI:379740088"
                     /db_xref="GeneID:11913131"
                     /translation="MAEFGLGDYLAAEGRLIVRAENFDFEAFAETALRLVNLLSARVL
                     EKQCDADLHTWLIDFEGCHLLLRGEHYSQSLWLETLTAGQGDEELAFIAKLLQRI"
     misc_feature    203677..203961
                     /locus_tag="O3Y_00900"
                     /note="Protein of unknown function (DUF3630); Region:
                     DUF3630; pfam12305"
                     /db_xref="CDD:152740"
     gene            204138..204500
                     /locus_tag="O3Y_00905"
                     /db_xref="GeneID:11913132"
     CDS             204138..204500
                     /locus_tag="O3Y_00905"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332058.1"
                     /db_xref="GI:379740089"
                     /db_xref="GeneID:11913132"
                     /translation="MRLESIHQEVISFERFVWRCLRYALIALLVLLVGLLPGVIGFML
                     LAELAAAQAWLNALSMVSGLELPYPVADFHQSAALHLFLAFYSLFIETVFFVSLATLF
                     APAIHRVFHRMHCAEEAQ"
     gene            complement(204536..206365)
                     /locus_tag="O3Y_00910"
                     /db_xref="GeneID:11913133"
     CDS             complement(204536..206365)
                     /locus_tag="O3Y_00910"
                     /note="COG1132 ABC-type multidrug transport system, ATPase
                     and permease components"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332059.1"
                     /db_xref="GI:379740090"
                     /db_xref="GeneID:11913133"
                     /translation="MFQWFEKLTEPFPAQEPQTPPKSLVAFCRYYTQGFEKPLLLMSL
                     LSACVAMAEVTLVRYMGEIVDILSTQERHQFWEMHGERLWTMAALVLVVMPILALVHS
                     MLLHQTILGNYPMSIRWSTHRYLLKQSIGFFQRDFAGRVATKVMQNANSVRETVLKLV
                     DLSVYIAVYMVSMLVMIAEADKILVVPILVWLLFYIAIQVYFVPRLKTISTDQANAQS
                     QMTGRIVDTYTNITTVKLFSHSQRETTYAKSGMKQFLHTVYRQMRTLTSLLYSVDLIN
                     YLLLFSIAALSIQLWLAETVTVGVIAIGITIALRMQGMSKWIMWEIRALFESVGTVID
                     SMNTIANPVEIEDRPQAKSLQVKFGELSFSQVRFGYSAQKTVFDDLNLVIQAGEKVGI
                     VGRSGAGKSTLVNLLLRFYDVQSGQIRIDGQDISHVSQESLRRHIGMITQDTSLLHRS
                     IRDNILYGNPDADQAAIEEAARQAHAHDFIQELQDEQGRTGYDVQVGERGVKLSGGQR
                     QRIAIARVLLKNAPILIMDEATSALDSEVESAIQENLHTLMAGKTVIAIAHRLSTIAA
                     MDRLIVMDEGKIVEQGTHQELLAHKGIYAQLWAHQTGGFIGEA"
     misc_feature    complement(204554..206305)
                     /locus_tag="O3Y_00910"
                     /note="ABC-type multidrug transport system, ATPase and
                     permease components [Defense mechanisms]; Region: MdlB;
                     COG1132"
                     /db_xref="CDD:224055"
     misc_feature    complement(205427..206251)
                     /locus_tag="O3Y_00910"
                     /note="ABC transporter transmembrane region; Region:
                     ABC_membrane; cl00549"
                     /db_xref="CDD:271500"
     misc_feature    complement(204572..205285)
                     /locus_tag="O3Y_00910"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl21455"
                     /db_xref="CDD:271875"
     misc_feature    complement(205163..205186)
                     /locus_tag="O3Y_00910"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(order(204689..204691,204782..204787,
                     205040..205042,205160..205168,205172..205177))
                     /locus_tag="O3Y_00910"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(205040..205051)
                     /locus_tag="O3Y_00910"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(204830..204859)
                     /locus_tag="O3Y_00910"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(204782..204799)
                     /locus_tag="O3Y_00910"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(204764..204775)
                     /locus_tag="O3Y_00910"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(204683..204703)
                     /locus_tag="O3Y_00910"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            206500..208599
                     /locus_tag="O3Y_00915"
                     /db_xref="GeneID:11913134"
     CDS             206500..208599
                     /locus_tag="O3Y_00915"
                     /note="COG1629 Outer membrane receptor proteins, mostly Fe
                     transport"
                     /codon_start=1
                     /transl_table=11
                     /product="iron(III) compound receptor"
                     /protein_id="YP_005332060.1"
                     /db_xref="GI:379740091"
                     /db_xref="GeneID:11913134"
                     /translation="MRNIRPSQLGQYIRRALRLHFIPVVLVAAPSVMANTNQETEQLE
                     TLVVTASALKVETPAQETPKALSIVTQEEIVARAPQKLDEALRYTSGVTAQPYGADND
                     TDWLKVRGFDAATYQDGSRLFRDGYYTWLIEPYALERIEVLKGPASILYGEAPPGGVV
                     NAVQKKPTDIPQGEVGLQVGNDALRTLTLDISDYANQDGSVRYRLVALMKENDGQLNG
                     TQTSRNYLAPSLSIDISEQTRLTLLASFLEDSGVPTNPFFPAAGTLIDSNFGHIDPST
                     NLGQPDYDKYERRQVSLGYLFEHDLNDVWALSQTFNYGDNDLYLRSSYAFSNDDPSKD
                     TLTQGIVFRDGSTESLSLDNKAVAKWDSARVENTLLMGLELQRHQTQGVELDNYSFGT
                     INPFNPNYGNFTPIDESSAADRTITKEQASLYAQYQIKLDQQWIGLIGGRMDWVDTEN
                     ESQKNMQRKSRSDAEFSFNAGLMYLASNGVSPYLSYSQSFDVLSTIDSAKGELYKPLK
                     GEQTEVGVKYQPEFYDGYINLAWFDITQQNALVTNPTTFVATQTGEMTAQGIEVESVG
                     YVTDSLKLTASYTFTDAKTDETGGKGTQQAGLIPKHQASAWLDYDAAQLGLQGWTFGS
                     GVRYIGESKDNPRSSDRTVPSVTLVDLMAGYEITENWQVQLNINNLFDREFVSGCDYW
                     CYYGQSRSAVLSANYRW"
     misc_feature    206575..208596
                     /locus_tag="O3Y_00915"
                     /note="ferrichrome receptor precursor protein;
                     Provisional; Region: PRK14050"
                     /db_xref="CDD:237595"
     misc_feature    206698..208596
                     /locus_tag="O3Y_00915"
                     /note="TonB dependent/Ligand-Gated channels are created by
                     a monomeric 22 strand (22,24) anti-parallel beta-barrel.
                     Ligands apparently bind to the large extracellular loops.
                     The N-terminal 150-200 residues form a plug from the
                     periplasmic end of barrel; Region: ligand_gated_channel;
                     cd01347"
                     /db_xref="CDD:238657"
     misc_feature    order(206698..206721,206749..206778,206815..206832,
                     206842..206865,206899..206931,206965..206991)
                     /locus_tag="O3Y_00915"
                     /note="N-terminal plug; other site"
                     /db_xref="CDD:238657"
     misc_feature    order(207451..207453,207532..207534)
                     /locus_tag="O3Y_00915"
                     /note="ligand-binding site [chemical binding]; other site"
                     /db_xref="CDD:238657"
     gene            208730..209515
                     /locus_tag="O3Y_00920"
                     /db_xref="GeneID:11913135"
     CDS             208730..209515
                     /locus_tag="O3Y_00920"
                     /note="COG1120 ABC-type cobalamin/Fe3+-siderophores
                     transport systems, ATPase components"
                     /codon_start=1
                     /transl_table=11
                     /product="iron(III) ABC transporter ATP-binding protein"
                     /protein_id="YP_005332061.1"
                     /db_xref="GI:379740092"
                     /db_xref="GeneID:11913135"
                     /translation="MFQLADIQMVRGGRTILAIDHLTIPTHELTVVLGHNGSGKSTLV
                     SLLSGQQSPDNGQVTLNGQSLSSLPSKTLAKAVAFLPQKLPTSAGLTVRELVRLGRFP
                     WRGTLGRWRKEDELIIDAALEKTGVSGFAHNLADELSGGERQRAWVAMLLAQQSPVLI
                     LDEPTSALDVHHQYQLMALLAELNQTQGVGIIVILHDLNLALRYATHIVALKQGQIAF
                     EGGAELLLDEQRLSDLYHSPIRLIDHPNPISHSSTNKVSIVCA"
     misc_feature    208730..209467
                     /locus_tag="O3Y_00920"
                     /note="ABC-type cobalamin/Fe3+-siderophores transport
                     systems, ATPase components [Inorganic ion transport and
                     metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
                     /db_xref="CDD:224045"
     misc_feature    208760..209389
                     /locus_tag="O3Y_00920"
                     /note="ATP-binding component of iron-siderophores, vitamin
                     B12 and hemin transporters and related proteins; Region:
                     ABC_Iron-Siderophores_B12_Hemin; cd03214"
                     /db_xref="CDD:213181"
     misc_feature    208829..208852
                     /locus_tag="O3Y_00920"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213181"
     misc_feature    order(208838..208843,208847..208855,208973..208975,
                     209213..209218,209315..209317)
                     /locus_tag="O3Y_00920"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213181"
     misc_feature    208964..208975
                     /locus_tag="O3Y_00920"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213181"
     misc_feature    209141..209170
                     /locus_tag="O3Y_00920"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213181"
     misc_feature    209201..209218
                     /locus_tag="O3Y_00920"
                     /note="Walker B; other site"
                     /db_xref="CDD:213181"
     misc_feature    209225..209236
                     /locus_tag="O3Y_00920"
                     /note="D-loop; other site"
                     /db_xref="CDD:213181"
     misc_feature    209303..209323
                     /locus_tag="O3Y_00920"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213181"
     gene            209506..210465
                     /locus_tag="O3Y_00925"
                     /db_xref="GeneID:11913136"
     CDS             209506..210465
                     /locus_tag="O3Y_00925"
                     /note="COG0614 ABC-type Fe3+-hydroxamate transport system,
                     periplasmic component"
                     /codon_start=1
                     /transl_table=11
                     /product="iron complex transport system substrate-binding
                     protein"
                     /protein_id="YP_005332062.1"
                     /db_xref="GI:379740093"
                     /db_xref="GeneID:11913136"
                     /translation="MCLMSLWNVRLRNICRPKAVFGWLAALCLFALPVQAQIVLTDSQ
                     GTHTFAEVPQRVVVLNWDLLEQVLELGIQPVGAPELSSYVQWVVQPEVPSSVQDIGTR
                     TEPNLEKIAALKPDVILAAGPQQDLLATLGRIAPVVYLPNFSEQDNAAQVAISHFKTL
                     ATLFGKEAVAQQKLEAMYARFSELKASLQHAFGDTLPAVVTLRFANPTSVFLYTENST
                     PQYVLEQLGLSSALPQPPKEWGIVQKRLSELQHVEQGYVLYFLPFAEEKKVQKSVLWR
                     AMPFVQAGRVNSVRPVWSYGGAMSLRYSAEAITESLLAVAPQS"
     misc_feature    209656..210405
                     /locus_tag="O3Y_00925"
                     /note="Fe3+-siderophore binding domain FhuD.  These
                     proteins have been shown to function as initial receptors
                     in ABC transport of Fe3+-siderophores in many eubacterial
                     species. They belong to the TroA-like superfamily of
                     helical backbone metal receptor proteins...; Region: FhuD;
                     cd01146"
                     /db_xref="CDD:238566"
     misc_feature    209671..210363
                     /locus_tag="O3Y_00925"
                     /note="Periplasmic binding protein; Region: Peripla_BP_2;
                     pfam01497"
                     /db_xref="CDD:250662"
     misc_feature    order(209761..209763,209809..209814,209872..209874,
                     210136..210138)
                     /locus_tag="O3Y_00925"
                     /note="siderophore binding site; other site"
                     /db_xref="CDD:238566"
     gene            210462..212423
                     /locus_tag="O3Y_00930"
                     /db_xref="GeneID:11913137"
     CDS             210462..212423
                     /locus_tag="O3Y_00930"
                     /note="COG0609 ABC-type Fe3+-siderophore transport system,
                     permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-hydroxamate transporter permease subunit"
                     /protein_id="YP_005332063.1"
                     /db_xref="GI:379740094"
                     /db_xref="GeneID:11913137"
                     /translation="MSVLRLTGLGALTLLLALVSLQWGHNLTLNEQWQLVLGHQAAQS
                     FAQVNFIYAQLPRAVMAIVVGAVLGLVGSLMQQLTQNRLTSPLTLGTSSGAWLGLIIV
                     NIWFSDWVADYSALAAMAGALLAFALIISIAGLRNLTGLPLVVSGMVVNILLGSIATA
                     LVLLNEEFAQNVFMWGAGDLAQNGWEWLTWLLPRLALVFPLLLFAPRVLTLLRLGHEG
                     AAARGLAVLPAFLFLMAGGIWLVSASITAVGVIGFIGLLTPNIARSLGARTTKMELYS
                     SALLGALLLLATDMLAMGLSVWAEEVVPSGITAAVIGAPALIWFSRRQLQAQDSLSIS
                     LSSHRRSPSRWAVMLIAAALLLALSLHIGWQMESASWALPSEFQWPLRWPRMLTALFA
                     GVGLAIAGTLLQRLIYNPLASPDILGVSSGATFALVFASLFLGQSLQSTHWMTALLGS
                     AAVLVALLLLGRRHHYAPSSLILTGIAITALLEALVQFTLAKGTGDSYQILLWLSGST
                     YRATGEQALLLSVGVVGLTLLALGLSRWLTLISIGRGFASARGLSASRASLVLLILVA
                     LLCALVTATMGPVSFVGLIAPHMAMMLGAQRAPSQLLLAALVGGTLMLWADWLGQALL
                     FPAQIAAGTLVAIIGGSYFLLLLLSQRAR"
     misc_feature    210519..212420
                     /locus_tag="O3Y_00930"
                     /note="iron-hydroxamate transporter permease subunit;
                     Provisional; Region: PRK10577"
                     /db_xref="CDD:236720"
     misc_feature    210636..211421
                     /locus_tag="O3Y_00930"
                     /note="Transmembrane subunit (TM), of Periplasmic Binding
                     Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters involved in the uptake of siderophores, heme,
                     vitamin B12, or the divalent cations Mg2+ and Zn2+.
                     PBP-dependent ABC transporters consist of...; Region:
                     TM_ABC_iron-siderophores_like; cd06550"
                     /db_xref="CDD:119348"
     misc_feature    order(210687..210689,210699..210707,211068..211073,
                     211077..211085,211089..211094,211098..211115,
                     211119..211127,211248..211250,211269..211271)
                     /locus_tag="O3Y_00930"
                     /note="ABC-ATPase subunit  interface; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(210702..210704,210708..210710,210723..210725,
                     210885..210887,210891..210896,210903..210908,
                     210915..210920,210927..210929,210936..210941,
                     210945..210947,210978..210983,210990..210992,
                     211218..211220,211380..211382,211389..211394,
                     211401..211403,211410..211415)
                     /locus_tag="O3Y_00930"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(210945..210947,211020..211022,211194..211196,
                     211206..211208,211338..211340,211371..211373)
                     /locus_tag="O3Y_00930"
                     /note="putative PBP binding regions; other site"
                     /db_xref="CDD:119348"
     misc_feature    211617..212402
                     /locus_tag="O3Y_00930"
                     /note="Transmembrane subunit (TM), of Periplasmic Binding
                     Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters involved in the uptake of siderophores, heme,
                     vitamin B12, or the divalent cations Mg2+ and Zn2+.
                     PBP-dependent ABC transporters consist of...; Region:
                     TM_ABC_iron-siderophores_like; cd06550"
                     /db_xref="CDD:119348"
     misc_feature    order(211671..211673,211683..211691,212052..212057,
                     212061..212069,212073..212078,212082..212099,
                     212103..212111,212232..212234,212253..212255)
                     /locus_tag="O3Y_00930"
                     /note="ABC-ATPase subunit  interface; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(211686..211688,211692..211694,211707..211709,
                     211869..211871,211875..211880,211887..211892,
                     211899..211904,211911..211913,211920..211925,
                     211929..211931,211962..211967,211974..211976,
                     212202..212204,212358..212360,212367..212372,
                     212379..212381,212388..212393,212400..212402)
                     /locus_tag="O3Y_00930"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(211929..211931,212004..212006,212178..212180,
                     212190..212192,212322..212324,212349..212351)
                     /locus_tag="O3Y_00930"
                     /note="putative PBP binding regions; other site"
                     /db_xref="CDD:119348"
     gene            complement(212450..213298)
                     /locus_tag="O3Y_00935"
                     /db_xref="GeneID:11913138"
     CDS             complement(212450..213298)
                     /locus_tag="O3Y_00935"
                     /note="COG1737 Transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RpiR family protein"
                     /protein_id="YP_005332064.1"
                     /db_xref="GI:379740095"
                     /db_xref="GeneID:11913138"
                     /translation="MSVLQRIVSRRTQLSESGRQIGDWVLANAAQAAAMTSQDLAAWA
                     NVSQSSIVKFTQRLGFKGYSEFKLALTEELGRKQVMVNQPLHSNILADDPVAVIAQKL
                     VQTKTEAMFHTTNALRLDEFSEAISWIQQAVRVQIIGIGGSALVAKDLAFKLLKLGIT
                     ALTEQDSHVQIATARTLHSQDVLIAISFSGEKREILIAAEAAKQQGAKVIALTTPNKN
                     RLREIADLALDTIADETQHRSSAIASRTAQNVLTDLIFLTLTQQRETSARQLIDDISS
                     DIRQMR"
     misc_feature    complement(212453..213298)
                     /locus_tag="O3Y_00935"
                     /note="Transcriptional regulators [Transcription]; Region:
                     RpiR; COG1737"
                     /db_xref="CDD:224651"
     misc_feature    complement(213077..213298)
                     /locus_tag="O3Y_00935"
                     /note="Helix-turn-helix domain, rpiR family; Region:
                     HTH_6; pfam01418"
                     /db_xref="CDD:201784"
     misc_feature    complement(212528..212941)
                     /locus_tag="O3Y_00935"
                     /note="RpiR-like protein. RpiR contains a SIS (Sugar
                     ISomerase) domain, which is found in many phosphosugar
                     isomerases and phosphosugar binding proteins. In E. coli,
                     rpiR negatively regulates the expression of rpiB gene.
                     Both rpiB and rpiA are ribose phosphate...; Region:
                     SIS_RpiR; cd05013"
                     /db_xref="CDD:240144"
     misc_feature    complement(order(212738..212740,212870..212872))
                     /locus_tag="O3Y_00935"
                     /note="putative active site [active]"
                     /db_xref="CDD:240144"
     gene            213529..214431
                     /gene="murQ"
                     /locus_tag="O3Y_00940"
                     /db_xref="GeneID:11913139"
     CDS             213529..214431
                     /gene="murQ"
                     /locus_tag="O3Y_00940"
                     /note="COG2103 Predicted sugar phosphate isomerase"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="YP_005332065.1"
                     /db_xref="GI:379740096"
                     /db_xref="GeneID:11913139"
                     /translation="MKIDLTRLVTESRNPASEQIDTLPTLDMLKVINQQDQLVALAVA
                     QTLPQVAQAVEAIATAFAQGGRLIYMGAGTSGRLGILDASECPPTYGSQPEQVIGLIA
                     GGHTAILKAVENAEDNRELGQSDLKALHLSEKDVLVGIAASGRTPYVIAGMEYARSVG
                     ATVVSLACNPGCPMEAYADIVITPVVGAEVVTGSSRMKAGTAQKLVLNMLTTGAMIKS
                     GKVFGNLMVDVEATNAKLIQRQTNIVVEATGVSAEQAEAALAACGRHCKTAILMILGG
                     FSAEQAAQKLTQHQGFIRAALNQE"
     misc_feature    213535..214425
                     /gene="murQ"
                     /locus_tag="O3Y_00940"
                     /note="N-acetylmuramic acid-6-phosphate etherase;
                     Reviewed; Region: murQ; PRK05441"
                     /db_xref="CDD:235467"
     misc_feature    213574..214344
                     /gene="murQ"
                     /locus_tag="O3Y_00940"
                     /note="N-acetylmuramic acid 6-phosphate etherase. Members
                     of this family contain the SIS (Sugar ISomerase) domain.
                     The SIS domain is found in many phosphosugar isomerases
                     and phosphosugar binding proteins. The bacterial cell wall
                     sugar N-acetylmuramic acid...; Region: SIS_Etherase;
                     cd05007"
                     /db_xref="CDD:240140"
     misc_feature    order(213751..213753,213949..213951)
                     /gene="murQ"
                     /locus_tag="O3Y_00940"
                     /note="putative active site [active]"
                     /db_xref="CDD:240140"
     gene            214462..215907
                     /gene="murP"
                     /locus_tag="O3Y_00945"
                     /db_xref="GeneID:11913140"
     CDS             214462..215907
                     /gene="murP"
                     /locus_tag="O3Y_00945"
                     /note="COG1264 Phosphotransferase system IIB components"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system N-acetylmuramic acid transporter
                     subunit IIBC"
                     /protein_id="YP_005332066.1"
                     /db_xref="GI:379740097"
                     /db_xref="GeneID:11913140"
                     /translation="MAKITQTMMAQVLSLVGGSGNVAKCGNCMTRLRLTLNNSALADH
                     AALKKISGVMGVVESDAQLQIILGPGKAQTAADMMNALIESGDNVAPAVSEADLSTIA
                     AQQKKQMKSKQTSAVQRFLSKFATIFTPLIPGFIAAGLLLGIATLLEQIYVVGQTPSE
                     FMLDLVAYLKVFGKGLFAFLSILIGYNAQQAFGGSGVNGAILASLFVLGYDPEATKGI
                     YSGMSEFFGFAIDPRGNIIGVLLAAILGAQVERKVREYMPDDLDMILTSVVTLLIMGA
                     VTFLIIMPIGGELFKGMSWLFLNLNDNPLGAAILAGLFLISVVFGIHQGFVPVYFALM
                     EAQGFNSLFPILAMAGAGQVGASLALYARAKKETTIRTQIKGAIIPGILGIGEPLIYG
                     VTLPRVKPFVTACIGGAAGGFFIGLISYLGLPVGLNTVFGPSGVVAIPLMTSADGIFA
                     GMAVFVGGLLISYTVGFAATYFFGCKDVDLS"
     misc_feature    214462..215904
                     /gene="murP"
                     /locus_tag="O3Y_00945"
                     /note="PTS system N-acetylmuramic acid transporter
                     subunits EIIBC; Reviewed; Region: murP; PRK09586"
                     /db_xref="CDD:181971"
     misc_feature    214477..214710
                     /gene="murP"
                     /locus_tag="O3Y_00945"
                     /note="PTS_IIB, PTS system, glucose/sucrose specific IIB
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This family...; Region:
                     PTS_IIB_glc; cd00212"
                     /db_xref="CDD:238130"
     misc_feature    214540..214560
                     /gene="murP"
                     /locus_tag="O3Y_00945"
                     /note="active site turn [active]"
                     /db_xref="CDD:238130"
     misc_feature    214543..214545
                     /gene="murP"
                     /locus_tag="O3Y_00945"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238130"
     misc_feature    214810..215898
                     /gene="murP"
                     /locus_tag="O3Y_00945"
                     /note="Phosphotransferase system IIC components,
                     glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
                     transport and metabolism]; Region: PtsG; COG1263"
                     /db_xref="CDD:224183"
     gene            complement(216014..216502)
                     /locus_tag="O3Y_00950"
                     /db_xref="GeneID:11913141"
     CDS             complement(216014..216502)
                     /locus_tag="O3Y_00950"
                     /note="COG2862 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332067.1"
                     /db_xref="GI:379740098"
                     /db_xref="GeneID:11913141"
                     /translation="MERLIEKLLYSSRWIMAPIYLGLSLLLLALGIKFFQEIFHLLPN
                     IFTIKEVDLILVALSLIDVSLVGGLIVMVMFSGYENFVSKLDVDESEDKLGWLGKLDT
                     SSLKNKVSASIVAISSIHLLKVFMNTENIESDKIKWYLLLHITFVVSAFAMGYLDKIT
                     KK"
     misc_feature    complement(216017..216502)
                     /locus_tag="O3Y_00950"
                     /note="hypothetical protein; Provisional; Region:
                     PRK05208"
                     /db_xref="CDD:179964"
     gene            complement(216568..217434)
                     /locus_tag="O3Y_00955"
                     /db_xref="GeneID:11913142"
     CDS             complement(216568..217434)
                     /locus_tag="O3Y_00955"
                     /note="COG1561 Uncharacterized stress-induced protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332068.1"
                     /db_xref="GI:379740099"
                     /db_xref="GeneID:11913142"
                     /translation="MIYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRG
                     LEPLLRERFRQRLSRGKIECHLRFEANPAAQSHLTINEGLAQQVINAANQIMHMTGEL
                     SRINPFQVMQWPGVMETPEQDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQR
                     LQAISAEVVKVRARMPEILEWQRERLFSKFEEAKIELDASRVEQELILLAQKSDVAEE
                     LDRLDSHVKEAREVLKKGGSCGRKLDFMMQEFNRESNTLASKSISTDITASGVELKVL
                     IEQMREQIQNIE"
     misc_feature    complement(216571..217434)
                     /locus_tag="O3Y_00955"
                     /note="hypothetical protein; Provisional; Region:
                     PRK11820"
                     /db_xref="CDD:236993"
     misc_feature    complement(216970..217431)
                     /locus_tag="O3Y_00955"
                     /note="YicC-like family, N-terminal region; Region:
                     YicC_N; pfam03755"
                     /db_xref="CDD:252148"
     misc_feature    complement(216571..216828)
                     /locus_tag="O3Y_00955"
                     /note="Domain of unknown function (DUF1732); Region:
                     DUF1732; pfam08340"
                     /db_xref="CDD:254742"
     gene            217598..218314
                     /gene="rph"
                     /locus_tag="O3Y_00960"
                     /db_xref="GeneID:11913143"
     CDS             217598..218314
                     /gene="rph"
                     /locus_tag="O3Y_00960"
                     /EC_number="2.7.7.56"
                     /note="COG0689 RNase PH"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="YP_005332069.1"
                     /db_xref="GI:379740100"
                     /db_xref="GeneID:11913143"
                     /translation="MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIE
                     EGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVV
                     DLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVA
                     AVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELL
                     AVAKKGIADIVAVQKASLLD"
     misc_feature    217598..218305
                     /gene="rph"
                     /locus_tag="O3Y_00960"
                     /note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
                     /db_xref="CDD:178914"
     misc_feature    217625..218305
                     /gene="rph"
                     /locus_tag="O3Y_00960"
                     /note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
                     /db_xref="CDD:206767"
     misc_feature    order(217655..217669,217697..217699,217703..217705,
                     217709..217711,217715..217717,217721..217723,
                     217781..217783,217787..217789,217793..217810,
                     217814..217816,217823..217828,217850..217855,
                     217859..217864,217871..217873,217883..217885,
                     217892..217894,217934..217936,217940..217942,
                     217946..217948,217952..217960,218183..218197,
                     218201..218203,218207..218224,218228..218230,
                     218237..218242,218249..218254,218261..218263)
                     /gene="rph"
                     /locus_tag="O3Y_00960"
                     /note="hexamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:206767"
     misc_feature    order(217790..217792,217853..217855,217958..217975,
                     218135..218137,218153..218155)
                     /gene="rph"
                     /locus_tag="O3Y_00960"
                     /note="active site"
                     /db_xref="CDD:206767"
     gene            218681..219322
                     /gene="pyrE"
                     /locus_tag="O3Y_00965"
                     /db_xref="GeneID:11913144"
     CDS             218681..219322
                     /gene="pyrE"
                     /locus_tag="O3Y_00965"
                     /EC_number="2.4.2.10"
                     /note="COG0461 Orotate phosphoribosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="YP_005332070.1"
                     /db_xref="GI:379740101"
                     /db_xref="GeneID:11913144"
                     /translation="MKAYQREFIEFALEKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
                     DLARLGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRKEA
                     KNHGEGGNLVGSKLEGRVMLVDDVITAGTAIRESMELIQANKADLAGVLVAIDRQEKG
                     KGELSAIQEVERDFGCAVISIVSLTDLITYLEQQGNNTEHLEAVKAYRAQYGI"
     misc_feature    218825..219178
                     /gene="pyrE"
                     /locus_tag="O3Y_00965"
                     /note="Phosphoribosyl transferase (PRT)-type I domain;
                     Region: PRTases_typeI; cd06223"
                     /db_xref="CDD:206754"
     misc_feature    order(218891..218893,218897..218899,219050..219058,
                     219062..219076,219146..219148)
                     /gene="pyrE"
                     /locus_tag="O3Y_00965"
                     /note="active site"
                     /db_xref="CDD:206754"
     gene            complement(219408..220385)
                     /locus_tag="O3Y_00970"
                     /db_xref="GeneID:11913145"
     CDS             complement(219408..220385)
                     /locus_tag="O3Y_00970"
                     /note="COG1560 Lauroyl/myristoyl acyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
                     acyltransferase"
                     /protein_id="YP_005332071.1"
                     /db_xref="GI:379740102"
                     /db_xref="GeneID:11913145"
                     /translation="MSDQDNGIARHLHNPQFEWRFLHPKHWGTWIGIAFAALLAFIPW
                     RLRDRLAKPLVPLIIKKNGRVVRRARVNLAYCFPEKSEQEREQILHDTFVKASQFMLG
                     YSELLVRSTRYNNARGELIGEENLLPLLDSGERVILLVPHSWAIDYAAVMLAARGYKV
                     ANIMKPQRNPIADWLMHVQRMQYGGRIFTRESGIKPFLRSIQSGYVGYWVPDEDHGPQ
                     NSVFVPFFATEKATLKGFGKMAKLCKAHVVPLMSCYNSDSGRYEVHILPALQNFPTGD
                     EEADALAMNRAIEALVTPQPEQYMWNLSLLKTQRDGSEIYDNSHHGDQS"
     misc_feature    complement(<219885..220256)
                     /locus_tag="O3Y_00970"
                     /note="Lysophospholipid acyltransferases (LPLATs) of
                     glycerophospholipid biosynthesis; Region: LPLAT; cl17185"
                     /db_xref="CDD:271800"
     misc_feature    complement(219483..220031)
                     /locus_tag="O3Y_00970"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LABLAT-like; Region:
                     LPLAT_LABLAT-like; cd07984"
                     /db_xref="CDD:153246"
     misc_feature    complement(order(219741..219749,219885..219896,
                     219945..219947,219951..219953,219960..219962))
                     /locus_tag="O3Y_00970"
                     /note="putative acyl-acceptor binding pocket; other site"
                     /db_xref="CDD:153246"
     gene            complement(220396..221343)
                     /locus_tag="O3Y_00975"
                     /db_xref="GeneID:11913146"
     CDS             complement(220396..221343)
                     /locus_tag="O3Y_00975"
                     /note="COG1560 Lauroyl/myristoyl acyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="YP_005332072.1"
                     /db_xref="GI:379740103"
                     /db_xref="GeneID:11913146"
                     /translation="MSQDKYSKPEFSFSLLHPKYWGVWLGFGLLALLVNLLPYPVLLK
                     IGRGLGQFSMRFGKKRVHIARRNLELAFPTMSQSEIDAFVLENFKNTGAALIETGITW
                     FWPTWRFKRILIDKDTQAIRQHAKTGQGVLLCCVHALNLEITARAFAVLGIGGYGVYR
                     PHSNPAYEFIQYRGRTRNGNQLINRTDIKQMIRVLRQGERLFYLPDQDYGHNKSVFVP
                     FFAVEEACTTTGTSILAYTSHCAIVIGSGFRNAQGRYEIMADKSIEADYPQKDETAAA
                     AYMNKFVEEIILRAPEQWMWLHKRFKSLPDYELTNSRYQ"
     misc_feature    complement(220438..221025)
                     /locus_tag="O3Y_00975"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LABLAT-like; Region:
                     LPLAT_LABLAT-like; cd07984"
                     /db_xref="CDD:153246"
     misc_feature    complement(order(220717..220725,220858..220869,
                     220918..220920,220924..220926,220933..220935))
                     /locus_tag="O3Y_00975"
                     /note="putative acyl-acceptor binding pocket; other site"
                     /db_xref="CDD:153246"
     gene            complement(221349..221939)
                     /gene="slmA"
                     /locus_tag="O3Y_00980"
                     /db_xref="GeneID:11913147"
     CDS             complement(221349..221939)
                     /gene="slmA"
                     /locus_tag="O3Y_00980"
                     /note="COG1309 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="division inhibitor protein"
                     /protein_id="YP_005332073.1"
                     /db_xref="GI:379740104"
                     /db_xref="GeneID:11913147"
                     /translation="MAGNKKINRREEILQALAEMLESNEGASRITTAKLAKQVGVSEA
                     ALYRHFPSKARMFEGLIEFIEESLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNPG
                     LTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQL
                     LGQVEGSLNRFVRSDFKYLPTANFDEYWALLSAQIK"
     misc_feature    complement(221361..221939)
                     /gene="slmA"
                     /locus_tag="O3Y_00980"
                     /note="division inhibitor protein; Provisional; Region:
                     slmA; PRK09480"
                     /db_xref="CDD:181894"
     misc_feature    complement(221760..221903)
                     /gene="slmA"
                     /locus_tag="O3Y_00980"
                     /note="Bacterial regulatory proteins, tetR family; Region:
                     TetR_N; pfam00440"
                     /db_xref="CDD:249860"
     gene            complement(222098..223297)
                     /locus_tag="O3Y_00985"
                     /db_xref="GeneID:11913148"
     CDS             complement(222098..223297)
                     /locus_tag="O3Y_00985"
                     /EC_number="6.3.2.5"
                     /note="COG0452 Phosphopantothenoylcysteine
                     synthetase/decarboxylase"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate synthase"
                     /protein_id="YP_005332074.1"
                     /db_xref="GI:379740105"
                     /db_xref="GeneID:11913148"
                     /translation="MQSLAGKKILLGISGGIAAYKCAELTRRLVERGATVQVVMTHAA
                     KEFITPLTMQAVSGRPVSDSLLDPAAEASMGHIELAKWADLVLLAPATADLIARMAAG
                     MGNDLLTTLILATSAPVAIAPAMNQQMYRNIATQENLQTLIRRGYLTWGPAAGEQACG
                     DVGPGRMLEPMELVAHCENFFAPKILVGKRVLITAGPTREALDPVRYITNHSSGKMGF
                     ALAKAAAQLGADVTLVSGPVHLPTPVGVNRIDVQSGLEMHSAVMKEATSHQIFIACAA
                     VADYRPQTVAEQKIKKSRDNDTLTIEMVKNPDIVASVAALTENRPFTVGFAAETQDVE
                     TYARSKLVRKNLDMICANDVSIAGQGFNSNDNALTLFWKEGQHSLPLTSKDALASAVM
                     HLIHEQM"
     misc_feature    complement(222107..223297)
                     /locus_tag="O3Y_00985"
                     /note="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate synthase; Validated;
                     Region: PRK05579"
                     /db_xref="CDD:235513"
     misc_feature    complement(222746..223282)
                     /locus_tag="O3Y_00985"
                     /note="Flavoprotein; Region: Flavoprotein; cl19190"
                     /db_xref="CDD:267543"
     misc_feature    complement(222185..222742)
                     /locus_tag="O3Y_00985"
                     /note="DNA / pantothenate metabolizm flavoprotein; Region:
                     DFP; pfam04127"
                     /db_xref="CDD:252395"
     gene            223480..225159
                     /locus_tag="O3Y_00990"
                     /db_xref="GeneID:11913149"
     CDS             223480..225159
                     /locus_tag="O3Y_00990"
                     /note="COG0840 Methyl-accepting chemotaxis protein"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="YP_005332075.1"
                     /db_xref="GI:379740106"
                     /db_xref="GeneID:11913149"
                     /translation="MLSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELEN
                     YRTDLIDAKKKELQAYLMMGVTAVKPLYESDKAGENQAQAKQILKAMRFDSDGYFFAY
                     DSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQ
                     APKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVF
                     TIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDK
                     LHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVA
                     SNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQV
                     LKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLN
                     ALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQ
                     SAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFKL"
     misc_feature    223615..223884
                     /locus_tag="O3Y_00990"
                     /note="Cache domain; Region: Cache_2; pfam08269"
                     /db_xref="CDD:254697"
     misc_feature    224170..224313
                     /locus_tag="O3Y_00990"
                     /note="Histidine kinase, Adenylyl cyclase,
                     Methyl-accepting protein, and Phosphatase (HAMP) domain.
                     HAMP is a signaling domain which occurs in a wide variety
                     of signaling proteins, many of which are bacterial. The
                     HAMP domain consists of two alpha helices...; Region:
                     HAMP; cd06225"
                     /db_xref="CDD:100122"
     misc_feature    order(224170..224172,224179..224184,224188..224193,
                     224200..224205,224209..224211,224263..224268,
                     224272..224277,224284..224289,224293..224298,
                     224305..224310)
                     /locus_tag="O3Y_00990"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:100122"
     misc_feature    224347..225153
                     /locus_tag="O3Y_00990"
                     /note="Methyl-accepting chemotaxis-like domains
                     (chemotaxis sensory transducer); Region: MA; smart00283"
                     /db_xref="CDD:214599"
     misc_feature    224449..225048
                     /locus_tag="O3Y_00990"
                     /note="Methyl-accepting chemotaxis protein (MCP),
                     signaling domain; Region: MCP_signal; cd11386"
                     /db_xref="CDD:206779"
     misc_feature    order(224473..224478,224485..224490,224497..224499,
                     224506..224511,224515..224520,224527..224529,
                     224536..224541,224548..224550,224557..224562,
                     224569..224574,224581..224583,224590..224595,
                     224599..224604,224614..224616,224620..224625,
                     224632..224634,224641..224646,224653..224658,
                     224665..224667,224674..224676,224683..224688,
                     224695..224697,224707..224709,224716..224718,
                     224737..224739,224749..224751,224758..224760,
                     224767..224772,224779..224781,224788..224793,
                     224800..224805,224809..224814,224821..224826,
                     224863..224868,224875..224877,224884..224889,
                     224896..224898,224905..224910,224914..224919,
                     224926..224931,224938..224940,224947..224952,
                     224959..224961,224968..224973,224977..224982,
                     224989..224994,224998..225003,225010..225012,
                     225019..225024,225031..225033,225040..225045)
                     /locus_tag="O3Y_00990"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:206779"
     misc_feature    224683..224784
                     /locus_tag="O3Y_00990"
                     /note="putative CheW interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:206779"
     gene            225271..225945
                     /locus_tag="O3Y_00995"
                     /db_xref="GeneID:11913150"
     CDS             225271..225945
                     /locus_tag="O3Y_00995"
                     /note="COG2003 DNA repair proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332076.1"
                     /db_xref="GI:379740107"
                     /db_xref="GeneID:11913150"
                     /translation="MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVL
                     ALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFVQLQAVLEMTQRYLAETLKRGDA
                     LTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
                     ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSF
                     AERGWI"
     misc_feature    225271..225942
                     /locus_tag="O3Y_00995"
                     /note="hypothetical protein; Reviewed; Region: PRK00024"
                     /db_xref="CDD:178801"
     misc_feature    225604..225927
                     /locus_tag="O3Y_00995"
                     /note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466;
                     cd08071"
                     /db_xref="CDD:163702"
     misc_feature    order(225637..225639,225787..225789,225793..225795,
                     225817..225819,225826..225828)
                     /locus_tag="O3Y_00995"
                     /note="MPN+ (JAMM) motif; other site"
                     /db_xref="CDD:163702"
     misc_feature    order(225787..225789,225793..225795,225826..225828)
                     /locus_tag="O3Y_00995"
                     /note="Zinc-binding site [ion binding]; other site"
                     /db_xref="CDD:163702"
     gene            226240..226476
                     /gene="rpmB"
                     /locus_tag="O3Y_01000"
                     /db_xref="GeneID:11913151"
     CDS             226240..226476
                     /gene="rpmB"
                     /locus_tag="O3Y_01000"
                     /note="COG0227 Ribosomal protein L28"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="YP_005332077.1"
                     /db_xref="GI:379740108"
                     /db_xref="GeneID:11913151"
                     /translation="MSRVCQVTGKRPAVGNNRSHAKNATKRRFLPNLQTHRFWVESEK
                     RFVKLRLTAKGMRIIDKKGIDAVLVEIRARGENV"
     misc_feature    226240..226467
                     /gene="rpmB"
                     /locus_tag="O3Y_01000"
                     /note="50S ribosomal protein L28; Reviewed; Region: rpmB;
                     PRK00359"
                     /db_xref="CDD:234736"
     gene            226490..226657
                     /gene="rpmG"
                     /locus_tag="O3Y_01005"
                     /db_xref="GeneID:11913152"
     CDS             226490..226657
                     /gene="rpmG"
                     /locus_tag="O3Y_01005"
                     /note="COG0267 Ribosomal protein L33"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="YP_005332078.1"
                     /db_xref="GI:379740109"
                     /db_xref="GeneID:11913152"
                     /translation="MAKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKYDPVVR
                     QHVVYKEAKIK"
     misc_feature    226490..226648
                     /gene="rpmG"
                     /locus_tag="O3Y_01005"
                     /note="50S ribosomal protein L33; Validated; Region: rpmG;
                     PRK00595"
                     /db_xref="CDD:179075"
     gene            226884..227366
                     /locus_tag="O3Y_01010"
                     /db_xref="GeneID:11913153"
     CDS             226884..227366
                     /locus_tag="O3Y_01010"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332079.1"
                     /db_xref="GI:379740110"
                     /db_xref="GeneID:11913153"
                     /translation="MRVSPNRRRRWNNILILSVIAFIAVINLPTVIKSYLLPDPASQF
                     PSLLRTDATLQALYFPAFSLEKSREEWQSEPELSVDGQELVQRWHALTGTEVDEATYR
                     ALQPTLPNAQTIEVWYADREEPQRITFYQTPQFWLLKNWQDRWIAVSAEASYLFPAPL
                     "
     gene            227376..228185
                     /locus_tag="O3Y_01015"
                     /db_xref="GeneID:11913154"
     CDS             227376..228185
                     /locus_tag="O3Y_01015"
                     /EC_number="3.2.2.23"
                     /note="COG0266 Formamidopyrimidine-DNA glycosylase"
                     /codon_start=1
                     /transl_table=11
                     /product="formamidopyrimidine/5-formyluracil/
                     5-hydroxymethyluracil DNA glycosylase"
                     /protein_id="YP_005332080.1"
                     /db_xref="GI:379740111"
                     /db_xref="GeneID:11913154"
                     /translation="MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELKQL
                     EGQTILAIHRRAKYLIIETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKR
                     LRYNDPRRFGAWLWCAPDESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIMD
                     NAAVVGVGNIYANESLFTSRLHPLRPAHSLSLEEWQTLVANIKQVLQVAIKQGGTTLK
                     DFTQSDGKPGYFAQELQVYGKAKQPCPHCGEPLCEQKIAQRNTFFCPQCQH"
     misc_feature    227376..228182
                     /locus_tag="O3Y_01015"
                     /note="formamidopyrimidine/5-formyluracil/
                     5-hydroxymethyluracil DNA glycosylase; Validated; Region:
                     PRK01103"
                     /db_xref="CDD:234899"
     misc_feature    227379..227729
                     /locus_tag="O3Y_01015"
                     /note="N-terminal domain of Escherichia coli Fpg1/MutM and
                     related bacterial DNA glycosylases; Region: EcFpg-like_N;
                     cd08966"
                     /db_xref="CDD:176800"
     misc_feature    order(227379..227384,227544..227546,227586..227588,
                     227592..227600,227640..227645,227697..227708)
                     /locus_tag="O3Y_01015"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176800"
     misc_feature    227379..227381
                     /locus_tag="O3Y_01015"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:176800"
     misc_feature    order(227382..227393,227397..227402,227409..227411,
                     227535..227546,227598..227600)
                     /locus_tag="O3Y_01015"
                     /note="H2TH interface [polypeptide binding]; other site"
                     /db_xref="CDD:176800"
     misc_feature    order(227382..227384,227544..227546)
                     /locus_tag="O3Y_01015"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:176800"
     misc_feature    227586..227588
                     /locus_tag="O3Y_01015"
                     /note="turnover-facilitating residue; other site"
                     /db_xref="CDD:176800"
     misc_feature    order(227595..227597,227700..227702,227706..227708)
                     /locus_tag="O3Y_01015"
                     /note="intercalation triad [nucleotide binding]; other
                     site"
                     /db_xref="CDD:176800"
     misc_feature    227598..227600
                     /locus_tag="O3Y_01015"
                     /note="8OG recognition residue [nucleotide binding]; other
                     site"
                     /db_xref="CDD:176800"
     misc_feature    order(227643..227645,227703..227705)
                     /locus_tag="O3Y_01015"
                     /note="putative reading head residues; other site"
                     /db_xref="CDD:176800"
     misc_feature    227760..228038
                     /locus_tag="O3Y_01015"
                     /note="Formamidopyrimidine-DNA glycosylase H2TH domain;
                     Region: H2TH; pfam06831"
                     /db_xref="CDD:115485"
     misc_feature    228096..228182
                     /locus_tag="O3Y_01015"
                     /note="Zinc finger found in FPG and IleRS; Region:
                     zf-FPG_IleRS; pfam06827"
                     /db_xref="CDD:253933"
     gene            complement(228282..228776)
                     /gene="coaD"
                     /locus_tag="O3Y_01020"
                     /db_xref="GeneID:11913155"
     CDS             complement(228282..228776)
                     /gene="coaD"
                     /locus_tag="O3Y_01020"
                     /EC_number="2.7.7.3"
                     /note="COG0669 Phosphopantetheine adenylyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine adenylyltransferase"
                     /protein_id="YP_005332081.1"
                     /db_xref="GI:379740112"
                     /db_xref="GeneID:11913155"
                     /translation="MSQKRLSRVIYPGTFDPITNGHLDLIERAAQMFDEVIIAVAASP
                     SKNTLFTLEERVEFARQVTSHLDNVSAKGFSGLLVDFAKAEKANVLIRGLRTTVDFEY
                     EFGLTNMYRRLMPGLESVFLTPAEEHAFISSTLVREVAIHGGNVDEFVPAIVANALHQ
                     KKKI"
     misc_feature    complement(228297..228755)
                     /gene="coaD"
                     /locus_tag="O3Y_01020"
                     /note="Phosphopantetheine adenylyltransferase; Region:
                     PPAT; cd02163"
                     /db_xref="CDD:173914"
     misc_feature    complement(order(228384..228386,228393..228395,
                     228405..228407,228447..228449,228459..228461,
                     228468..228473,228492..228494,228498..228503,
                     228543..228551,228639..228641,228654..228656,
                     228702..228704,228711..228716,228732..228746))
                     /gene="coaD"
                     /locus_tag="O3Y_01020"
                     /note="active site"
                     /db_xref="CDD:173914"
     misc_feature    complement(228711..228722)
                     /gene="coaD"
                     /locus_tag="O3Y_01020"
                     /note="(T/H)XGH motif; other site"
                     /db_xref="CDD:173914"
     gene            228887..229924
                     /locus_tag="O3Y_01025"
                     /db_xref="GeneID:11913156"
     CDS             228887..229924
                     /locus_tag="O3Y_01025"
                     /note="COG0859 ADP-heptose:LPS heptosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332082.1"
                     /db_xref="GI:379740113"
                     /db_xref="GeneID:11913156"
                     /translation="MKKLLVIRNDKIGDFMLAWPSFAMLKASLPDCHITALVPKYTAA
                     LAELCPWIDAVIIDPGQQADKAQHKQLVQTVKAQQFDASINLFSTMYNALLVWKARIP
                     YRLAPATKLAQIFYQHRIKQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTF
                     PAEQLAAQRSKLAEQLDIGPDKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHKQVV
                     LTAGPGEEEKAAQLQSLLAEQGVLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIA
                     AALDVPTVGFFPAKRSATPLRWRPLNSQGKHIAFCPPPADDKANQENMGRIDMKSVLT
                     ELAPWLRSVQL"
     misc_feature    228887..229909
                     /locus_tag="O3Y_01025"
                     /note="ADP-heptose:LPS heptosyltransferase [Cell envelope
                     biogenesis, outer membrane]; Region: RfaF; COG0859"
                     /db_xref="CDD:223928"
     misc_feature    228893..229828
                     /locus_tag="O3Y_01025"
                     /note="Lipopolysaccharide heptosyltransferase is involved
                     in the biosynthesis of lipooligosaccharide (LOS).
                     Lipopolysaccharide (LPS) is a major component of the outer
                     membrane of gram-negative bacteria. LPS
                     heptosyltransferase transfers heptose molecules from...;
                     Region: GT1_LPS_heptosyltransferase; cd03789"
                     /db_xref="CDD:99964"
     misc_feature    order(229445..229450,229544..229546,229649..229654,
                     229688..229690,229697..229702,229709..229711)
                     /locus_tag="O3Y_01025"
                     /note="putative active site [active]"
                     /db_xref="CDD:99964"
     gene            complement(229986..230765)
                     /locus_tag="O3Y_01030"
                     /db_xref="GeneID:11913157"
     CDS             complement(229986..230765)
                     /locus_tag="O3Y_01030"
                     /note="COG0463 Glycosyltransferases involved in cell wall
                     biogenesis"
                     /codon_start=1
                     /transl_table=11
                     /product="(heptosyl)LPS beta-1,4-glucosyltransferase"
                     /protein_id="YP_005332083.1"
                     /db_xref="GI:379740114"
                     /db_xref="GeneID:11913157"
                     /translation="MSKPTLAVALIVKNEARHLDECLQTVHDWVDEIVVLDSGSHDET
                     EQVARRYTEKFYVNAKWPGFGLQRQLAQSYVQSDYVLWLDADERVTPELKQSILQAVA
                     ANKPDTLYQFARLSWVFGRFIRHSGWYPDRVLRLYPTQLTRYNDALVHEKVHVEPSMK
                     VETLAGDAIHYTYNDVHHYLVKSAGYAKAWADQRQAKGKKASLSQGIVHAVGCFLKMY
                     LLKRGFLDGKQGFLIALLSAHSTFVKYADLWARDNDEHYKR"
     misc_feature    complement(229989..230762)
                     /locus_tag="O3Y_01030"
                     /note="Glycosyltransferases involved in cell wall
                     biogenesis [Cell envelope biogenesis, outer membrane];
                     Region: WcaA; COG0463"
                     /db_xref="CDD:223539"
     misc_feature    complement(230064..230753)
                     /locus_tag="O3Y_01030"
                     /note="UDP-glucose LOS-beta-1,4 glucosyltransferase is
                     required for biosynthesis of lipooligosaccharide; Region:
                     Beta4Glucosyltransferase; cd02511"
                     /db_xref="CDD:133005"
     misc_feature    complement(order(230508..230510,230514..230516))
                     /locus_tag="O3Y_01030"
                     /note="putative metal binding site; other site"
                     /db_xref="CDD:133005"
     gene            complement(230808..231875)
                     /locus_tag="O3Y_01035"
                     /db_xref="GeneID:11913158"
     CDS             complement(230808..231875)
                     /locus_tag="O3Y_01035"
                     /note="COG0859 ADP-heptose:LPS heptosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="YP_005332084.1"
                     /db_xref="GI:379740115"
                     /db_xref="GeneID:11913158"
                     /translation="MALFQSAPHSLCILRLSAIGDVCNTIAAVQAIQRQWPQTRITWV
                     TGKLEAELIQSLPDIQVIVFDKKLGWRAYTQLWQQLKSERFDALLHMQYAFRASIATL
                     GIKARYKLGFDAARSQDFQTWFTNVKVPSPDKMHVLDGLLAFVEHLGIRDIEPKWSLT
                     CQPDDLTWAEAQFQPEQPRLVVVPGASKAYKNWTAEGYAAVIEHAQQQGWQVILAGSP
                     AQVERDLAAQVEQALAHPVLNLVGKSTLQQMLALLAKADLVIAPDTGPAHMANAMHTP
                     IIGLYAHHNPERTGPYHYRHYVVSAYQEALLAETGKMPQQVDWRTRVKDPNAMQRITA
                     QQVIAMFERAAADIMATQVND"
     misc_feature    complement(230847..231854)
                     /locus_tag="O3Y_01035"
                     /note="ADP-heptose:LPS heptosyltransferase [Cell envelope
                     biogenesis, outer membrane]; Region: RfaF; COG0859"
                     /db_xref="CDD:223928"
     misc_feature    complement(230859..231848)
                     /locus_tag="O3Y_01035"
                     /note="Lipopolysaccharide heptosyltransferase is involved
                     in the biosynthesis of lipooligosaccharide (LOS).
                     Lipopolysaccharide (LPS) is a major component of the outer
                     membrane of gram-negative bacteria. LPS
                     heptosyltransferase transfers heptose molecules from...;
                     Region: GT1_LPS_heptosyltransferase; cd03789"
                     /db_xref="CDD:99964"
     misc_feature    complement(order(231069..231071,231078..231083,
                     231090..231092,231126..231131,231231..231233,
                     231327..231332))
                     /locus_tag="O3Y_01035"
                     /note="putative active site [active]"
                     /db_xref="CDD:99964"
     gene            232009..232716
                     /locus_tag="O3Y_01040"
                     /db_xref="GeneID:11913159"
     CDS             232009..232716
                     /locus_tag="O3Y_01040"
                     /note="COG0515 Serine/threonine protein kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic-acid kinase"
                     /protein_id="YP_005332085.1"
                     /db_xref="GI:379740116"
                     /db_xref="GeneID:11913159"
                     /translation="MIQTFNDAQQKVWFDDALLHEDPSQCCNPEFWQQNGKVLGSATG
                     RGTTWFVQLQQTQGALRHYRRGGLFGKLVADSYWFTGWEKTRSYQEFMLLNHLRDAGV
                     NVPRPIAARVQKHGLLYKADLLSEKVPNARDLVSILQESPISDELYRKIGREIRKMHD
                     AQVNHTDLNIHNILIDDQEKVWIIDFDKCYVQIGDSWKQGNLKRLKRSFEKEVCKRGI
                     NWSLEAFAIISSYKHEE"
     misc_feature    232009..232707
                     /locus_tag="O3Y_01040"
                     /note="3-deoxy-D-manno-octulosonic-acid kinase; Reviewed;
                     Region: PRK01723"
                     /db_xref="CDD:234975"
     gene            232720..233679
                     /locus_tag="O3Y_01045"
                     /db_xref="GeneID:11913160"
     CDS             232720..233679
                     /locus_tag="O3Y_01045"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332086.1"
                     /db_xref="GI:379740117"
                     /db_xref="GeneID:11913160"
                     /translation="MLFDQITFVIQGPITPSITSTSVRRLRSIFPGCQIIVSTWEGEN
                     TQDIEADLIIYNKDPGSTIFVYSKRNDAIPVNINRQIVSTVSGLRHVKTKFAAKLRAD
                     NILNKRRVLEIFEQFPLRKEGYAVLNNRLVCSNYFAKEFERGLSVPFFFSDFFQFGEV
                     EDLLKVWDCDLYSDYDFKSTLSGKKQHKYYPNDSVNVEQKIWSNAARKLYPYELKDEH
                     GDHFARQQSYNFMINNLIIVDGDELGLDVPQRLRHSNSYPYDFFTFQRWKWLYENEFL
                     KTKNTPLNFKFFWYLSLIIKTIRKGVRLKLRKTLTPIFIKVRE"
     misc_feature    232735..233655
                     /locus_tag="O3Y_01045"
                     /note="WavE lipopolysaccharide synthesis; Region: WavE;
                     pfam07507"
                     /db_xref="CDD:254247"
     gene            complement(233683..234612)
                     /locus_tag="O3Y_01050"
                     /db_xref="GeneID:11913161"
     CDS             complement(233683..234612)
                     /locus_tag="O3Y_01050"
                     /note="COG1887 Putative glycosyl/glycerophosphate
                     transferases involved in teichoic acid biosynthesis
                     TagF/TagB/EpsJ/RodC"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332087.1"
                     /db_xref="GI:379740118"
                     /db_xref="GeneID:11913161"
                     /translation="MIKIDDEAITFVVQGPVQASASRQQIAGITEQCLNSIRRFFPKS
                     TIILSTWKGQPLDGLDYDQVLELDDPGANTVFYDGQPIKLNNNRQMYSTHMGLKAVKT
                     PYAVKLRTDNLLTGRQFVELYERYADLPRAQNYQFLTQRVLTSSTFFISSHYGHPVHF
                     HKSDLFDFGLTQDLLTIWSDRWIPELHFTLKPGYKARHPATEQVLCLNWISALLDEEH
                     HIESKTCDHAGLGENFWPQFMANNLLMDCPENIGLDVTERFYKRGNLALEYDLKDWLH
                     LNQITSIPYDKKRLYRYYRNQIGRILKKIHSFN"
     misc_feature    complement(233689..234588)
                     /locus_tag="O3Y_01050"
                     /note="WavE lipopolysaccharide synthesis; Region: WavE;
                     pfam07507"
                     /db_xref="CDD:254247"
     gene            complement(234609..235352)
                     /locus_tag="O3Y_01055"
                     /db_xref="GeneID:11913162"
     CDS             complement(234609..235352)
                     /locus_tag="O3Y_01055"
                     /note="COG1209 dTDP-glucose pyrophosphorylase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332088.1"
                     /db_xref="GI:379740119"
                     /db_xref="GeneID:11913162"
                     /translation="MIVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYF
                     ASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQG
                     VDYQGSITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVIQT
                     AEKNPISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNLLIQKGLN
                     IHYHLIARHEVIFCGVPDEYTDFLRQPQP"
     misc_feature    complement(234636..235349)
                     /locus_tag="O3Y_01055"
                     /note="GT2_BcbE_like is likely involved in the
                     biosynthesis of the polysaccharide capsule; Region:
                     GT2_BcE_like; cd04183"
                     /db_xref="CDD:133026"
     misc_feature    complement(order(235008..235010,235332..235334,
                     235338..235340))
                     /locus_tag="O3Y_01055"
                     /note="Ligand binding site; other site"
                     /db_xref="CDD:133026"
     gene            complement(235349..236932)
                     /locus_tag="O3Y_01060"
                     /db_xref="GeneID:11913163"
     CDS             complement(235349..236932)
                     /locus_tag="O3Y_01060"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332089.1"
                     /db_xref="GI:379740120"
                     /db_xref="GeneID:11913163"
                     /translation="MFLIMSGAYVGQELESEFGRIPPSFLPLGNRRLFQHQVALAPQG
                     VKVYLSLPESYVVSEIDLQWLEQNQVTIIATPDGLSLGASLVAALNISGHSLNAPLHI
                     LYGDTLFNQLPVGDDIVSVSTAKDSYNWAVLTNDDVDWLQDANTPMSHESQRIIDGYF
                     KFSHPRELVRCITQSEWKFIAGLNRYHKSVGLSAVNSIGWLDFGHVNTYYHSKAEFTT
                     QRAFNELTITAKWIEKSSIKNQKIAAEAYWFDNLPMAMRGFIPQYLGSQNSEGKISYR
                     LEYLYLTALNELFVFSRLPSQIWQKILASAVEFLSLCLEQAVEPNAPINTLDILFADK
                     TALRLNEFCAARHITLEDQWQFAGQDISLAQILRDSQKHLPDGKPLLGVLHGDFCFSN
                     ILYDFRANKIKTIDPRGMTPDGQKTLYGDIRYDLAKLSHSILGLYDWIIAGYYHVEIA
                     DNAIELKIAEQSHHKETQQGFIELIEQTFGLTAKNLYAMQIQLFLSMLPLHADDRRRQ
                     DALFANAFRLHQILLRLDQ"
     misc_feature    complement(<236666..236860)
                     /locus_tag="O3Y_01060"
                     /note="MobA-like NTP transferase domain; Region:
                     NTP_transf_3; pfam12804"
                     /db_xref="CDD:257311"
     gene            complement(236923..237303)
                     /locus_tag="O3Y_01065"
                     /db_xref="GeneID:11913164"
     CDS             complement(236923..237303)
                     /locus_tag="O3Y_01065"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332090.1"
                     /db_xref="GI:379740121"
                     /db_xref="GeneID:11913164"
                     /translation="MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIV
                     ISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAV
                     RPSEFASMNLEEIHQLFEKEKSCS"
     misc_feature    complement(<237040..237294)
                     /locus_tag="O3Y_01065"
                     /note="Haloacid dehalogenase-like hydrolases. The haloacid
                     dehalogenase-like (HAD) superfamily includes L-2-haloacid
                     dehalogenase, epoxide hydrolase, phosphoserine
                     phosphatase, phosphomannomutase, phosphoglycolate
                     phosphatase, P-type ATPase, and many others; Region:
                     HAD_like; cd01427"
                     /db_xref="CDD:119389"
     misc_feature    complement(order(237160..237165,237277..237285))
                     /locus_tag="O3Y_01065"
                     /note="active site"
                     /db_xref="CDD:119389"
     misc_feature    complement(237268..237285)
                     /locus_tag="O3Y_01065"
                     /note="motif I; other site"
                     /db_xref="CDD:119389"
     misc_feature    complement(237163..237165)
                     /locus_tag="O3Y_01065"
                     /note="motif II; other site"
                     /db_xref="CDD:119389"
     gene            complement(237300..238580)
                     /locus_tag="O3Y_01070"
                     /db_xref="GeneID:11913165"
     CDS             complement(237300..238580)
                     /locus_tag="O3Y_01070"
                     /note="COG1519 3-deoxy-D-manno-octulosonic-acid
                     transferase"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic-acid transferase"
                     /protein_id="YP_005332091.1"
                     /db_xref="GI:379740122"
                     /db_xref="GeneID:11913165"
                     /translation="MLLRTLYTLLLTLAAPFLLYGLYRRRQGKPSVGKRWKEHFGITP
                     PLKTTTPPIWIHAASVGETLAVTPLIKQIKQRSPNTPILLTTTTPTGAEQAEKLADWV
                     EHRYTPIDFSFAVRGFLRRVRPCQLIIVETELWPNTLHTVAKAGLPITLVNARLSEKS
                     YRGYQRIHPFFNSMAKPLSLVLCQFADDAQRFIQLGVAETKIKITGSIKFDINITYEV
                     IAQGEALRTALGKHRPVWIAASTHQGEDEIVLAAHQEILKQHPNALLILVPRHPERFA
                     AVHKLAASLFSVQTRSSQQTITSDTQVYLGDTMGEMLVLLGASDVCFMGGSLVGKKVG
                     GHNLLEPAALAKPIVTGPSFYNFTDITHALINAHACVIADQPETIAKQVNHWFSDAQE
                     RQQCGKNALAIVMQNRGALENTLTELGFTKEFAQ"
     misc_feature    complement(237327..238541)
                     /locus_tag="O3Y_01070"
                     /note="3-deoxy-D-manno-octulosonic-acid transferase;
                     Reviewed; Region: PRK05749"
                     /db_xref="CDD:235589"
     misc_feature    complement(237939..238481)
                     /locus_tag="O3Y_01070"
                     /note="3-Deoxy-D-manno-octulosonic-acid transferase
                     (kdotransferase); Region: Glycos_transf_N; pfam04413"
                     /db_xref="CDD:252580"
     misc_feature    complement(237357..>238283)
                     /locus_tag="O3Y_01070"
                     /note="Glycosyltransferases catalyze the transfer of sugar
                     moieties from activated donor molecules to specific
                     acceptor molecules, forming glycosidic bonds. The acceptor
                     molecule can be a lipid, a protein, a heterocyclic
                     compound, or another carbohydrate...; Region:
                     Glycosyltransferase_GTB_type; cl10013"
                     /db_xref="CDD:271687"
     gene            complement(238580..239362)
                     /locus_tag="O3Y_01075"
                     /db_xref="GeneID:11913166"
     CDS             complement(238580..239362)
                     /locus_tag="O3Y_01075"
                     /note="COG3774 Mannosyltransferase OCH1 and related
                     enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyltransferase OCH1-like enzyme"
                     /protein_id="YP_005332092.1"
                     /db_xref="GI:379740123"
                     /db_xref="GeneID:11913166"
                     /translation="MSKVTVLIANRLIRLTGNLFKMLSYPFHWVFPKLRFTIPAYSPA
                     KLKMRANATIPRTIWQTNFTDQASLPVYLNYLFNRLMSLNCDYRYVSTEARGEFLKEH
                     TSPEVYDAYSRLTNGAAQADLWRLVVLNTYGGVYMDIDATLVWPLDKLLGDSQELYIR
                     IKNNTEITNYFIATAPNNPDLQATIEQVVYNVNHYEPSMGVYHSTGPTVLNNILSAKA
                     VIHTQDRKYVCIQGTFTNEHFQYIDKPRGKWTHINPEDLVKK"
     misc_feature    complement(238583..239362)
                     /locus_tag="O3Y_01075"
                     /note="Mannosyltransferase OCH1 and related enzymes [Cell
                     envelope biogenesis, outer membrane]; Region: OCH1;
                     COG3774"
                     /db_xref="CDD:226297"
     misc_feature    complement(238898..239155)
                     /locus_tag="O3Y_01075"
                     /note="Glycosyltransferase sugar-binding region containing
                     DXD motif; Region: Gly_transf_sug; pfam04488"
                     /db_xref="CDD:252625"
     gene            complement(239365..240414)
                     /locus_tag="O3Y_01080"
                     /db_xref="GeneID:11913167"
     CDS             complement(239365..240414)
                     /locus_tag="O3Y_01080"
                     /note="COG0859 ADP-heptose:LPS heptosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332093.1"
                     /db_xref="GI:379740124"
                     /db_xref="GeneID:11913167"
                     /translation="MKHLWFEKGAYASKAARQYLNDHFNPLAVKKTAVIRHAALGDQV
                     IVRPFLVEARKFFPNAEITLVTVSNYLYGTPSDLADKTVIMKSRDDSKQLSLRQKWQD
                     YNQLEAQDIIFDVAGTNRSYWMTLLTKAKLKVGFPYKPFLCGTLYNLAVFRSDFQPEV
                     ECMLDMLKILGHNPSYPLDFAYPDNRQICDHAAPYIVYFSGASQLRKILTKPEMRAVI
                     EQTIQQQPNVKHVFLEGKNEFEKGEYLQDLADNGSLTIQPCLPLDDLVTFIAKATLVI
                     APDTGIRNVAISTHTPTVGIFYATVPFRYTPLYEAHTIVMNANGEKPSTEQITSAIDT
                     TLKMRLAAAKNTQEQ"
     misc_feature    complement(239368..240330)
                     /locus_tag="O3Y_01080"
                     /note="ADP-heptose:LPS heptosyltransferase [Cell envelope
                     biogenesis, outer membrane]; Region: RfaF; COG0859"
                     /db_xref="CDD:223928"
     misc_feature    complement(239470..240324)
                     /locus_tag="O3Y_01080"
                     /note="Glycosyltransferases catalyze the transfer of sugar
                     moieties from activated donor molecules to specific
                     acceptor molecules, forming glycosidic bonds. The acceptor
                     molecule can be a lipid, a protein, a heterocyclic
                     compound, or another carbohydrate...; Region:
                     Glycosyltransferase_GTB_type; cl10013"
                     /db_xref="CDD:271687"
     gene            complement(240411..241448)
                     /locus_tag="O3Y_01085"
                     /db_xref="GeneID:11913168"
     CDS             complement(240411..241448)
                     /locus_tag="O3Y_01085"
                     /note="COG0859 ADP-heptose:LPS heptosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS-heptosyltransferase II"
                     /protein_id="YP_005332094.1"
                     /db_xref="GI:379740125"
                     /db_xref="GeneID:11913168"
                     /translation="MKILVIGPSWVGDMVMSQSLYQRLKQQHPDAQIDVLAPAWCKPI
                     LERMPEVNQAIEMTIGHGAFNLLGRRAIGCELRDNRYTHAIVLPNSAKSALIPWFANI
                     PKRTGWKGEFRYGLLNDLRPDKRVFQYMVERYVALAHPKATMLADVSLEHCPRPKLVI
                     DAIVQQAARQRLSLVSSRPVIGLCPGAEFGPAKRWPDHYYAEVARYAIEQGFQVWLFG
                     SAKDHSVTTQIQQALSEEQREYCANLAGETSLIEAVDLLAACHTVVSNDSGLMHVSAA
                     VGCNIVAIYGSSSPKYTPPLTDKLAVVHTEIECRPCFKRVCPLEHLNCLNQLKPAQVI
                     KALDKFIGKDS"
     misc_feature    complement(240414..241448)
                     /locus_tag="O3Y_01085"
                     /note="ADP-heptose:LPS heptosyltransferase [Cell envelope
                     biogenesis, outer membrane]; Region: RfaF; COG0859"
                     /db_xref="CDD:223928"
     misc_feature    complement(240432..241445)
                     /locus_tag="O3Y_01085"
                     /note="Lipopolysaccharide heptosyltransferase is involved
                     in the biosynthesis of lipooligosaccharide (LOS).
                     Lipopolysaccharide (LPS) is a major component of the outer
                     membrane of gram-negative bacteria. LPS
                     heptosyltransferase transfers heptose molecules from...;
                     Region: GT1_LPS_heptosyltransferase; cd03789"
                     /db_xref="CDD:99964"
     misc_feature    complement(order(240630..240632,240639..240644,
                     240651..240653,240687..240692,240798..240800,
                     240897..240902))
                     /locus_tag="O3Y_01085"
                     /note="putative active site [active]"
                     /db_xref="CDD:99964"
     gene            complement(241448..242647)
                     /locus_tag="O3Y_01090"
                     /db_xref="GeneID:11913169"
     CDS             complement(241448..242647)
                     /locus_tag="O3Y_01090"
                     /note="COG3307 Lipid A core - O-antigen ligase and related
                     enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase"
                     /protein_id="YP_005332095.1"
                     /db_xref="GI:379740126"
                     /db_xref="GeneID:11913169"
                     /translation="MNNKITKTSIFLTISLLLITPGFSVVAVGLLTLYSSVKLIKNGL
                     NLNKFDIIPLITLSAYFLSNLPITIIDGDTLRYLDAGIRALLCIPMYFFIKNEISKGA
                     NLDNTLCTSTILASFGALAFAFYQFFILNMPRVDGFLFSINFGYLAAALAILSFGLSF
                     TQTRFKYYLYLSVVAATVATILTLTRGAILTLLFVFILFFIVNVRKIKFKQTLVFTLI
                     SFLLVSVSYQFSPRIQERVDFTIFEISSIASNNIHAAASSGGRLQLWYAAVEAFKHNP
                     IWGTTYSERESLNIELFKEGKVDEWTSTVPRGHAHSQYFEAIASNGTLGILAIFAMLI
                     LPFGVFLNDYRKTGSPISQTGYLFAFGFIIFCLTEAPLQANLIGTFYGFMVAIFYAYI
                     AAKRAKN"
     misc_feature    complement(241454..242635)
                     /locus_tag="O3Y_01090"
                     /note="Lipid A core - O-antigen ligase and related enzymes
                     [Cell envelope biogenesis, outer membrane]; Region: RfaL;
                     COG3307"
                     /db_xref="CDD:225844"
     misc_feature    complement(241658..242137)
                     /locus_tag="O3Y_01090"
                     /note="O-Antigen ligase; Region: Wzy_C; pfam04932"
                     /db_xref="CDD:252887"
     gene            complement(242649..243209)
                     /locus_tag="O3Y_01095"
                     /db_xref="GeneID:11913170"
     CDS             complement(242649..243209)
                     /locus_tag="O3Y_01095"
                     /note="COG0110 Acetyltransferase (isoleucine patch
                     superfamily)"
                     /codon_start=1
                     /transl_table=11
                     /product="hexapaptide repeat-containing transferase"
                     /protein_id="YP_005332096.1"
                     /db_xref="GI:379740127"
                     /db_xref="GeneID:11913170"
                     /translation="MAGFGLIAKLRNKIRVKPNNKIQIGKNTRIRYCDIYVNGNNNQL
                     IIHNGANLKGVSIELNGNNCLLEIGENCVIGENCFLSCRESGTKLVIGKECMFSRNVK
                     LMTSDGHDILRDGKRINPAKSIYIGSHVWLADNVTILKGVDIGSGSIIGINSTVTKSI
                     GQYCIAAGNPARKIKDNISWNTTLSY"
     misc_feature    complement(242685..243206)
                     /locus_tag="O3Y_01095"
                     /note="Acetyltransferase (isoleucine patch superfamily)
                     [General function prediction only]; Region: WbbJ; COG0110"
                     /db_xref="CDD:223188"
     misc_feature    complement(242688..243014)
                     /locus_tag="O3Y_01095"
                     /note="Maltose O-acyltransferase (MAT)-like: This family
                     is composed of maltose O-acetyltransferase, galactoside
                     O-acetyltransferase (GAT), xenobiotic acyltransferase
                     (XAT) and similar proteins. MAT and GAT catalyze the
                     CoA-dependent acetylation of the...; Region: LbH_MAT_like;
                     cd04647"
                     /db_xref="CDD:100053"
     misc_feature    complement(order(242703..242705,242751..242753,
                     242808..242810,242817..242819,242823..242825,
                     242877..242885,242904..242906,242922..242924,
                     242928..242930,242967..242969,242991..242993,
                     242997..242999))
                     /locus_tag="O3Y_01095"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:100053"
     misc_feature    complement(order(242700..242702,242706..242711,
                     242736..242741,242754..242759,242793..242795,
                     242808..242813,242817..242819,242877..242879,
                     242883..242885,242985..242987,242991..242993))
                     /locus_tag="O3Y_01095"
                     /note="active site"
                     /db_xref="CDD:100053"
     misc_feature    complement(order(242883..242885,242985..242987,
                     242991..242993))
                     /locus_tag="O3Y_01095"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100053"
     misc_feature    complement(order(242688..242690,242700..242702,
                     242706..242711,242715..242717,242736..242741,
                     242754..242759,242763..242765,242793..242795,
                     242808..242813,242817..242819,242877..242879,
                     242883..242885))
                     /locus_tag="O3Y_01095"
                     /note="CoA binding site [chemical binding]; other site"
                     /db_xref="CDD:100053"
     gene            complement(243223..244995)
                     /locus_tag="O3Y_01100"
                     /db_xref="GeneID:11913171"
     CDS             complement(243223..244995)
                     /locus_tag="O3Y_01100"
                     /note="COG0438 Glycosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332097.1"
                     /db_xref="GI:379740128"
                     /db_xref="GeneID:11913171"
                     /translation="MNILMALSQLEVTGAEVYATSVGNELTRRGHQVFYVSDTLTKAH
                     DGLFFKLRFNKRSIPRRFWHVAYLVYLIKKHQIQLVHAHSRASSWSCHIACRLTNTPM
                     VTTVHGRQPVHVSRKKFHAMGDKALPVCEAIREQLIKDLNVPESQLHVSRNGIETSIF
                     KRSAAPNNPKPVISIIGRLSGPKGELCYRLLTECLDLDRYQVQVITGTPLTERFSALQ
                     DKVSFPGYSANVEQIMAQSDLVIGAGRVAMEALLCGRPTLAIGEASCVGIIELDNLNQ
                     AMATNFGDIGPHDLAIDFQQIPALIEQGLSQPHCTQEITEQIKLNYDLQVIVNELENL
                     YQTFYVNKLQREVPIIMYHRFIRDDSEKGVHGTYLHVQQLEKHFQLLKKMGFETLTFK
                     DLSEKGFIHRLQPGKRFIIITVDDGYRDNYDLLLPLLKKYQFKAVVYVVTGENFNRWD
                     VEVSDNPEKVVPLMSPEQVKALHDSGLVEIGGHTMTHPFLSKLSESEQREEILRNKLE
                     LEALIGEPLTSFAYPYGDHDATSKQLAQDLGYPFAVATNSGPLLMHQDPYQIRRIAIF
                     PRTDTFGLWRKVKGNYLFRKMNKK"
     misc_feature    complement(243970..244995)
                     /locus_tag="O3Y_01100"
                     /note="Glycosyltransferase [Cell envelope biogenesis,
                     outer membrane]; Region: RfaG; COG0438"
                     /db_xref="CDD:223515"
     misc_feature    complement(244024..244995)
                     /locus_tag="O3Y_01100"
                     /note="This family is most closely related to the GT1
                     family of glycosyltransferases. WavL in Vibrio cholerae
                     has been shown to be involved in the biosynthesis of the
                     lipopolysaccharide core; Region: GT1_WavL_like; cd03819"
                     /db_xref="CDD:99989"
     misc_feature    complement(order(244246..244248,244306..244308,
                     244462..244470,244954..244956))
                     /locus_tag="O3Y_01100"
                     /note="putative ADP-binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:99989"
     misc_feature    complement(243226..243954)
                     /locus_tag="O3Y_01100"
                     /note="Predicted xylanase/chitin deacetylase [Carbohydrate
                     transport and metabolism]; Region: CDA1; COG0726"
                     /db_xref="CDD:223798"
     misc_feature    complement(243292..243768)
                     /locus_tag="O3Y_01100"
                     /note="Putative catalytic NodB homology domain of PgaB,
                     IcaB, and similar proteins which consist of a deformed
                     (beta/alpha)8 barrel fold with 5- or 6-strands; Region:
                     CE4_NodB_like_5s_6s; cd10918"
                     /db_xref="CDD:213023"
     misc_feature    complement(order(243421..243429,243535..243537,
                     243547..243549,243748..243753))
                     /locus_tag="O3Y_01100"
                     /note="putative active site [active]"
                     /db_xref="CDD:213023"
     misc_feature    complement(order(243535..243537,243547..243549,
                     243748..243750))
                     /locus_tag="O3Y_01100"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:213023"
     gene            complement(245154..246098)
                     /gene="rfaD"
                     /locus_tag="O3Y_01105"
                     /db_xref="GeneID:11913172"
     CDS             complement(245154..246098)
                     /gene="rfaD"
                     /locus_tag="O3Y_01105"
                     /EC_number="5.1.3.20"
                     /note="COG0451 Nucleoside-diphosphate-sugar epimerases"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-L-glycero-D-manno-heptose-6-epimerase"
                     /protein_id="YP_005332098.1"
                     /db_xref="GI:379740129"
                     /db_xref="GeneID:11913172"
                     /translation="MIIVTGGAGMIGSNIIKALNERGITDILVVDHLKNGRKFKNLVD
                     LQIADYMDRDDFLAQIMAGDDFGFIDAIFHEGACSATTEWDGKYVMLNNYEYSKELLH
                     YCLDREIPFLYASSAATYGETDTFIEEPQYEGALNVYGYSKQQFDNYVRRLWLDAKQH
                     DETLSQITGFRYFNVYGPREQHKGSMASVAFHLNNQMNAGENPKLFAGSENFKRDFVY
                     VGDVAAVNLWFLDHGVSGIFNCGTGKAESFNEVAKAVIAFHGRGEVETIPFPDHLKGA
                     YQEFTEADLTKLRAAGCDVQFKSVAEGVAEYMALINRK"
     misc_feature    complement(245160..246098)
                     /gene="rfaD"
                     /locus_tag="O3Y_01105"
                     /note="ADP-L-glycero-D-mannoheptose 6-epimerase (GME),
                     extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248"
                     /db_xref="CDD:187559"
     misc_feature    complement(245160..246098)
                     /gene="rfaD"
                     /locus_tag="O3Y_01105"
                     /note="ADP-L-glycero-D-mannoheptose-6-epimerase;
                     Provisional; Region: rfaD; PRK11150"
                     /db_xref="CDD:182998"
     misc_feature    complement(order(245550..245555,245574..245576,
                     245580..245585,245670..245672,245682..245684,
                     245751..245759,245811..245813,245823..245825,
                     245835..245837,245862..245864,245868..245876,
                     245940..245942,245985..245987,246003..246011,
                     246066..246074,246081..246086))
                     /gene="rfaD"
                     /locus_tag="O3Y_01105"
                     /note="NADP binding site [chemical binding]; other site"
                     /db_xref="CDD:187559"
     misc_feature    complement(order(245643..245645,245652..245657,
                     245664..245666,245676..245678,245685..245699,
                     245805..245807,245817..245819,245829..245831,
                     245838..245849,245943..245945,245949..245966,
                     245970..245975,245982..245984,245988..245993,
                     245997..246002))
                     /gene="rfaD"
                     /locus_tag="O3Y_01105"
                     /note="homopentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187559"
     misc_feature    complement(order(245355..245357,245457..245459,
                     245523..245525,245532..245534,245538..245546,
                     245577..245579,245856..245858))
                     /gene="rfaD"
                     /locus_tag="O3Y_01105"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187559"
     misc_feature    complement(order(245670..245672,245682..245684,
                     245751..245753,245820..245822))
                     /gene="rfaD"
                     /locus_tag="O3Y_01105"
                     /note="active site"
                     /db_xref="CDD:187559"
     gene            246651..247937
                     /locus_tag="O3Y_01110"
                     /db_xref="GeneID:11913173"
     CDS             246651..247937
                     /locus_tag="O3Y_01110"
                     /note="COG0836 Mannose-1-phosphate guanylyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanylyltransferase"
                     /protein_id="YP_005332099.1"
                     /db_xref="GI:379740130"
                     /db_xref="GeneID:11913173"
                     /translation="MLQATIERLQGLPIAEPIVISNEDHRFIVAEQIRRYGKKSRIIL
                     EPAGRNTAPAIALAAFTAIEQEDDPVLLVLAADHFVKNKSAFQAAISQAAQQAEAGKL
                     ATFGIVPTTPETGYGYIHRGEEVTQGTYEINSFVEKPQLNIAEQYLASGEYYWNSGCF
                     MFKASVFLNELKQHSPEIYRQCELAMQGLSHDYDFIRVGVEEFLKCPDDSIDYAVMEH
                     TKLGVVVSMDAGWSDVGSWSALWEVSDKDADGNVCQGDAILSGTSNCYIYAPNKLVAA
                     VGLKDIVVVETKDAVLVADKNQVQEVKKIVEHLKAENRAEYREHRERYRPWGKSDAID
                     KGERYKVNRITVEPGKKQSLQMHYHRAEHWVVVSGTAKVTCEGNVKVITENQSLYIPI
                     GTNHMIENPGKIPLELIEIQSGSYLNEDDVVRFEDK"
     misc_feature    246651..247934
                     /locus_tag="O3Y_01110"
                     /note="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase; Region:
                     GMP_PMI; TIGR01479"
                     /db_xref="CDD:233431"
     misc_feature    246651..247370
                     /locus_tag="O3Y_01110"
                     /note="GDP-M1P_Guanylyltransferase catalyzes the formation
                     of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase;
                     cd02509"
                     /db_xref="CDD:133003"
     misc_feature    247479..247931
                     /locus_tag="O3Y_01110"
                     /note="Mannose-6-phosphate isomerase; Region:
                     MannoseP_isomer; pfam01050"
                     /db_xref="CDD:144587"
     gene            247940..249331
                     /locus_tag="O3Y_01115"
                     /db_xref="GeneID:11913174"
     CDS             247940..249331
                     /locus_tag="O3Y_01115"
                     /note="COG1109 Phosphomannomutase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase"
                     /protein_id="YP_005332100.1"
                     /db_xref="GI:379740131"
                     /db_xref="GeneID:11913174"
                     /translation="MKELTCFKAYDIRGQLGSELDNEIAYRIGRSYGQFLKSENDADK
                     TVVVGGDVRLTSEALKQALANGLMDAGINVIDIGVTGTEEIYFATFYLGVDGGIEVTA
                     SHNPMDYNGMKLVREGSKPISGDTGLREIQALAEKNEFMDVEVKGNYKKVSLLPEYVD
                     HLISYITPAKIKPMKLVINSGNGAAGHVIDELEKRFIELSIPLEIIKVHHEEDGNFPN
                     GIPNPLLPECRADTANAVKEHKADMGIAFDGDFDRCFLFDENGDFIEGYYIVGLLAEA
                     FLQKEQGAKIIHDPRLSWNTIDVVTKSGGVPVMSKTGHAFIKERMRKEDAIYGGEMSA
                     HHYFRDFGYCDSGMIPWLLITELLSLAPDISLSKLISAKRFLFPCSGEINFKVKQAKL
                     IMEQVYLHYYENSIHFSAIDGISLEFEGWRFNLRDSNTEPLLRLNVESKQNIALMNDK
                     VEELTKLIKKLDI"
     misc_feature    247940..249319
                     /locus_tag="O3Y_01115"
                     /note="phosphomannomutase CpsG; Provisional; Region:
                     PRK15414"
                     /db_xref="CDD:185312"
     misc_feature    247955..249313
                     /locus_tag="O3Y_01115"
                     /note="The phosphomannomutase/phosphoglucomutase (PMM/PGM)
                     bifunctional enzyme catalyzes the reversible conversion of
                     1-phospho to 6-phospho-sugars (e.g. between
                     mannose-1-phosphate and mannose-6-phosphate or
                     glucose-1-phosphate and glucose-6-phosphate) via a...;
                     Region: PMM_PGM; cd03089"
                     /db_xref="CDD:100091"
     misc_feature    order(247961..247963,247967..247969,247976..247978,
                     248246..248254,248276..248278,248681..248683,
                     248687..248689,248693..248698,248810..248812,
                     248873..248881,248930..248932,248936..248938,
                     248942..248944,249215..249217,249221..249229)
                     /locus_tag="O3Y_01115"
                     /note="active site"
                     /db_xref="CDD:100091"
     misc_feature    order(247967..247969,247976..247978,248246..248248,
                     248696..248698,248810..248812,248873..248875,
                     248879..248881,248930..248932,248936..248938,
                     248942..248944,249215..249217,249221..249229)
                     /locus_tag="O3Y_01115"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100091"
     misc_feature    order(248246..248248,248681..248683,248687..248689,
                     248693..248695)
                     /locus_tag="O3Y_01115"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:100091"
     gene            249334..250455
                     /locus_tag="O3Y_01120"
                     /db_xref="GeneID:11913175"
     CDS             249334..250455
                     /locus_tag="O3Y_01120"
                     /note="COG1089 GDP-D-mannose dehydratase"
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="YP_005332101.1"
                     /db_xref="GI:379740132"
                     /db_xref="GeneID:11913175"
                     /translation="MNKKVALITGITGQDGSYLAEFLLEKGYEVHGIKRRSSLFNTQR
                     VDHLYKDPHEEDVNFKLHYGDLTDSSNLTRILAEVQPDEVYNLGAQSHVAVSFQSPEY
                     TADVDAIGTLRLLEAIRFLGLTKKTKFYQASTSELYGLVQEIPQKETTPFYPRSPYAV
                     AKMYAYWITINYRESYGIYACNGILFNHESPRRGETFVTRKITRGMANIAQGLEKCLF
                     MGNLDALRDWGHAKDYVKMQWMMLQQDEPRDFVIATGVQYSVREFIDMSARELGIELE
                     FVGKGVDEKAVVKSVIGTKAPAIKVGDIIVAVDPAYFRPAEVETLLGDPSLAKKELGW
                     VPEITLQQMVSEMVASDLEQAQSHALLKKHGYNVNVSVE"
     misc_feature    249340..250407
                     /locus_tag="O3Y_01120"
                     /note="GDP-D-mannose dehydratase [Cell envelope
                     biogenesis, outer membrane]; Region: Gmd; COG1089"
                     /db_xref="CDD:224014"
     misc_feature    249346..250392
                     /locus_tag="O3Y_01120"
                     /note="GDP-mannose 4,6 dehydratase, extended (e) SDRs;
                     Region: GDP_MD_SDR_e; cd05260"
                     /db_xref="CDD:187570"
     misc_feature    order(249361..249378,249436..249444,249523..249531,
                     249592..249600,249604..249606,249649..249651,
                     249727..249735,249805..249807,249817..249819,
                     249886..249900)
                     /locus_tag="O3Y_01120"
                     /note="NADP-binding site; other site"
                     /db_xref="CDD:187570"
     misc_feature    order(249367..249372,249436..249453,249460..249465,
                     249520..249528,249532..249546,249550..249558,
                     249562..249564,249598..249609,249616..249618,
                     249622..249633,249643..249648,249658..249660,
                     249667..249672,249679..249681,249688..249693,
                     249784..249795,249799..249804,249811..249816,
                     249820..249825,249832..249837,249841..249849,
                     249853..249861,249919..249924,250276..250281)
                     /locus_tag="O3Y_01120"
                     /note="homotetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187570"
     misc_feature    order(249604..249612,249733..249741,249805..249807,
                     249892..249894,249919..249927,249934..249936,
                     249985..249996,250003..250005,250009..250011,
                     250111..250113,250267..250269,250273..250275,
                     250282..250287)
                     /locus_tag="O3Y_01120"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187570"
     misc_feature    order(249622..249624,249631..249633,249643..249648,
                     249655..249660,249667..249672,249679..249681,
                     249784..249795,249799..249804,249811..249816,
                     249820..249825,249832..249837,249841..249849,
                     249853..249861,250276..250281)
                     /locus_tag="O3Y_01120"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187570"
     misc_feature    order(249652..249654,249733..249735,249805..249807,
                     249817..249819)
                     /locus_tag="O3Y_01120"
                     /note="active site"
                     /db_xref="CDD:187570"
     gene            250466..251569
                     /locus_tag="O3Y_01125"
                     /db_xref="GeneID:11913176"
     CDS             250466..251569
                     /locus_tag="O3Y_01125"
                     /note="COG0399 Predicted pyridoxal phosphate-dependent
                     enzyme apparently involved in regulation of cell wall
                     biogenesis"
                     /codon_start=1
                     /transl_table=11
                     /product="perosamine synthase"
                     /protein_id="YP_005332102.1"
                     /db_xref="GI:379740133"
                     /db_xref="GeneID:11913176"
                     /translation="MIPVYEPSLDGNERKYLNDCIDSGWVSSRGKYIDRFETEFAEFL
                     KVKHATTVSNGTVALHLAMSALGITQGDEVIVPTFTYVASVNTIVQCGALPVFAEIEG
                     ESLQVSVEDVKRKINKKTKAVMAVHIYGQACDIQSLRDLCDEHGLYLIEDCAEAIGTA
                     VNGKKVGTFGDVSTFSFFGNKTITSGEGGMVVSNSDIIIDKCLRLKNQGVVAGKRYWH
                     DLVAYNYRMTNLCAAIGVAQLERVDKIIKRKRDIAEIYRSELAGLPMQVHKESNGTFH
                     SYWLTSIILDQEFEVHRDGLMTFLENNDIESRPFFYPAHTLPMYEHLAEKTAFPLSNS
                     YSHRGINLPSWPGLCDDQVKEICNCIKNYFNCI"
     misc_feature    250469..251557
                     /locus_tag="O3Y_01125"
                     /note="lipopolysaccharide biosynthesis protein RfbH;
                     Provisional; Region: PRK15407"
                     /db_xref="CDD:237960"
     misc_feature    250502..251548
                     /locus_tag="O3Y_01125"
                     /note="3-amino-5-hydroxybenzoic acid synthase family
                     (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
                     (PLP)-dependent aspartate aminotransferase superfamily
                     (fold I). The members of this CD are involved in various
                     biosynthetic pathways for secondary...; Region: AHBA_syn;
                     cd00616"
                     /db_xref="CDD:99740"
     misc_feature    order(250628..250633,250919..250921,250928..250930,
                     250991..250993,251003..251008,251393..251395)
                     /locus_tag="O3Y_01125"
                     /note="inhibitor-cofactor binding pocket; inhibition site"
                     /db_xref="CDD:99740"
     misc_feature    order(250628..250633,250703..250705,250919..250921,
                     250928..250930,250991..250993,251006..251008)
                     /locus_tag="O3Y_01125"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99740"
     misc_feature    251006..251008
                     /locus_tag="O3Y_01125"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99740"
     gene            251575..252957
                     /locus_tag="O3Y_01130"
                     /db_xref="GeneID:11913177"
     CDS             251575..252957
                     /locus_tag="O3Y_01130"
                     /note="COG0438 Glycosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="rfbG protein"
                     /protein_id="YP_005332103.1"
                     /db_xref="GI:379740134"
                     /db_xref="GeneID:11913177"
                     /translation="MTEKKKLVVWVPLPPNSSWRGEGIAQTIENIVRNISPERKIEIV
                     VSSKHAEMLVGLEKSNPNISVLTLGFRGKSTKKTIGYVSLNEVEKDSLWDLVIAKLPI
                     IPAIFRKVGMYVSQLEYLLSLYIYSHLQRRGRFSSNNCRVWLPTPIIPYTHLLGGEKF
                     VSFWDPFVFEYNKEFPLTAEYFVKKLSKHFSNASAIITQSRANKDYLETVMGIESSKI
                     NVIYNGSPDYSEFKKQQSNLSFSEVWSKSEFSGASKKAAFEALVNHQLNFSVLWRLLT
                     KNKVSNRKIVLISTQNRPYKGFDQLFVLINELCLRRDNYDFIFTCNVPTKLKERYPSL
                     YERIHEVTRVDNYLHASLYLMSDIVLHPSNVEGGLGAYPQYEASSVGKPSLINTGRHV
                     NEMAEEGFDVDLLSSNFVNTKETVDKIEKLINSEEYMRQNIDAINRLKISWKESASNY
                     ENVFFGNENA"
     misc_feature    251866..252936
                     /locus_tag="O3Y_01130"
                     /note="Glycosyltransferase [Cell envelope biogenesis,
                     outer membrane]; Region: RfaG; COG0438"
                     /db_xref="CDD:223515"
     misc_feature    <251998..252924
                     /locus_tag="O3Y_01130"
                     /note="Glycosyltransferases catalyze the transfer of sugar
                     moieties from activated donor molecules to specific
                     acceptor molecules, forming glycosidic bonds. The acceptor
                     molecule can be a lipid, a protein, a heterocyclic
                     compound, or another carbohydrate...; Region:
                     Glycosyltransferase_GTB_type; cl10013"
                     /db_xref="CDD:271687"
     misc_feature    252418..252879
                     /locus_tag="O3Y_01130"
                     /note="Glycosyl transferases group 1; Region:
                     Glycos_transf_1; cl21512"
                     /db_xref="CDD:271932"
     gene            252929..253723
                     /locus_tag="O3Y_01135"
                     /db_xref="GeneID:11913178"
     CDS             252929..253723
                     /locus_tag="O3Y_01135"
                     /note="COG1682 ABC-type polysaccharide/polyol phosphate
                     export systems, permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide/O-antigen transport protein"
                     /protein_id="YP_005332104.1"
                     /db_xref="GI:379740135"
                     /db_xref="GeneID:11913178"
                     /translation="MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWL
                     SITMFVQILCIGLIWSLIWRMGVDDYLPYVGVGHIIYLFYTQTINESTGIFVADARVY
                     LNDRQPFMLSVGAHIYRNVLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFV
                     LFASYFCAVISTRFRDLIQLIGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLL
                     ELIRNPIIGIDVNPLAFVSLVAWTFIIGMVSYFSYKVLDKKVIFWV"
     misc_feature    252935..253720
                     /locus_tag="O3Y_01135"
                     /note="ABC-type polysaccharide/polyol phosphate export
                     systems, permease component [Carbohydrate transport and
                     metabolism / Cell envelope biogenesis, outer membrane];
                     Region: TagG; COG1682"
                     /db_xref="CDD:224596"
     gene            253851..254477
                     /locus_tag="O3Y_01140"
                     /db_xref="GeneID:11913179"
     CDS             253851..254477
                     /locus_tag="O3Y_01140"
                     /note="COG1134 ABC-type polysaccharide/polyol phosphate
                     transport system, ATPase component"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen export system ATP-binding protein"
                     /protein_id="YP_005332105.1"
                     /db_xref="GI:379740136"
                     /db_xref="GeneID:11913179"
                     /translation="MKYVHALRDINLKLEDSSRLGIIGHNGAGKTTLLRLLSQVYPPT
                     SGKVTIEGKISALTDFTLGMDPNATGLKNIEFRLVFMGCTFKEAQQAVEEIVAFSELG
                     EFINLPVRTYSTGMFLRLAFAISTHFTPDILILDEVIGAGDETFREKALSRLESLIKK
                     SRMVVLSSHDLNAIKQYCDQAIVMEKGEIVFNGTPQSCIDYYLNSVKK"
     misc_feature    253851..254429
                     /locus_tag="O3Y_01140"
                     /note="ATP-binding cassette component of polysaccharide
                     transport system; Region: ABC_KpsT_Wzt; cd03220"
                     /db_xref="CDD:213187"
     misc_feature    253854..254417
                     /locus_tag="O3Y_01140"
                     /note="ABC-type antimicrobial peptide transport system,
                     ATPase component [Defense mechanisms]; Region: SalX;
                     COG1136"
                     /db_xref="CDD:224059"
     misc_feature    253920..253943
                     /locus_tag="O3Y_01140"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213187"
     misc_feature    order(253929..253934,253938..253946,254148..254150,
                     254256..254261,254355..254357)
                     /locus_tag="O3Y_01140"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213187"
     misc_feature    254139..254150
                     /locus_tag="O3Y_01140"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213187"
     misc_feature    254184..254213
                     /locus_tag="O3Y_01140"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213187"
     misc_feature    254244..254261
                     /locus_tag="O3Y_01140"
                     /note="Walker B; other site"
                     /db_xref="CDD:213187"
     misc_feature    254268..254279
                     /locus_tag="O3Y_01140"
                     /note="D-loop; other site"
                     /db_xref="CDD:213187"
     misc_feature    254343..254363
                     /locus_tag="O3Y_01140"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213187"
     gene            254525..254758
                     /locus_tag="O3Y_01145"
                     /db_xref="GeneID:11913180"
     CDS             254525..254758
                     /locus_tag="O3Y_01145"
                     /note="COG0236 Acyl carrier protein"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="YP_005332106.1"
                     /db_xref="GI:379740137"
                     /db_xref="GeneID:11913180"
                     /translation="MSISEEKIINLIAGILEVEIGIINKELAVGDIPEWDSLAHMRII
                     AALESDLGVVLDIEQVLEIEDVEDIIDAVINNE"
     misc_feature    254525..254743
                     /locus_tag="O3Y_01145"
                     /note="Acyl carrier protein [Lipid metabolism / Secondary
                     metabolites biosynthesis, transport, and catabolism];
                     Region: AcpP; COG0236"
                     /db_xref="CDD:223314"
     gene            254764..256179
                     /locus_tag="O3Y_01150"
                     /db_xref="GeneID:11913181"
     CDS             254764..256179
                     /locus_tag="O3Y_01150"
                     /note="COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid
                     ligases II"
                     /codon_start=1
                     /transl_table=11
                     /product="rfbL protein"
                     /protein_id="YP_005332107.1"
                     /db_xref="GI:379740138"
                     /db_xref="GeneID:11913181"
                     /translation="MSVVERIFNHSESRPDCIAVYENDRTISYENLASDIKKTAAKLV
                     SLGVTSEDAVLVRSNNSYSFILLYFSIHYVGAKFVNVAPDSDVSYVSFIEDKVNPKLF
                     IEKSQDFIRNIDSYTFDNIFPPQARGIADIMFTSGTTGEPKGVLLSHKSLVLATEHII
                     SHVKNTNEDVELLLMPLSHSFAMARMRTSLFAGGAIVVGCSFKQLKSVFKAIEFYKVT
                     GLGLVPSAWSYITLMTKDLIRKYSEQLNFIEFGSAHFPFEDKKQVAEWFPNTNVVMHY
                     GLTEVSRATFIDFHNDDINAVGHRYRGADFKIIDNKGAEVIEGEEGEIVFKAPWMLDG
                     YFENSQLTSDCFVEGYFKTGDLGRVVGDYLFLTGRLKEIINVGGKKVSPDQVEKVLSE
                     ALGVQECACAALSDANMGEVVQAYIVVKSGWDCENVISNIKETINGQLPMHMRPKKYS
                     IVSALPKTVSGKVQRYKLSSE"
     misc_feature    254764..256167
                     /locus_tag="O3Y_01150"
                     /note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
                     II [Lipid metabolism / Secondary metabolites biosynthesis,
                     transport, and catabolism]; Region: CaiC; COG0318"
                     /db_xref="CDD:223395"
     misc_feature    254827..256155
                     /locus_tag="O3Y_01150"
                     /note="Adenylate forming domain, Class I; Region:
                     AFD_class_I; cl17068"
                     /db_xref="CDD:271793"
     misc_feature    order(255157..255159,255166..255183,255187..255192)
                     /locus_tag="O3Y_01150"
                     /note="acyl-activating enzyme (AAE) consensus motif; other
                     site"
                     /db_xref="CDD:213270"
     misc_feature    order(255166..255168,255514..255519,255583..255600,
                     255826..255828,255859..255861,255868..255870,
                     255901..255903,256147..256149)
                     /locus_tag="O3Y_01150"
                     /note="AMP binding site [chemical binding]; other site"
                     /db_xref="CDD:213270"
     misc_feature    order(255166..255168,255286..255291,255430..255432,
                     255442..255447,255454..255456,255514..255519,
                     255583..255600,255826..255828,255859..255861,
                     255868..255870,255892..255903,256102..256104)
                     /locus_tag="O3Y_01150"
                     /note="active site"
                     /db_xref="CDD:213270"
     misc_feature    order(255286..255288,255442..255447,255454..255456,
                     255514..255516,255892..255900,256072..256074,
                     256102..256104)
                     /locus_tag="O3Y_01150"
                     /note="CoA binding site [chemical binding]; other site"
                     /db_xref="CDD:213270"
     gene            256260..257312
                     /locus_tag="O3Y_01155"
                     /db_xref="GeneID:11913182"
     CDS             256260..257312
                     /locus_tag="O3Y_01155"
                     /note="COG1454 Alcohol dehydrogenase, class IV"
                     /codon_start=1
                     /transl_table=11
                     /product="acetaldehyde dehydrogenase"
                     /protein_id="YP_005332108.1"
                     /db_xref="GI:379740139"
                     /db_xref="GeneID:11913182"
                     /translation="MALKGLVANRAALIISPSFGSSQYFEQVVRLINAQSVRVIERSW
                     QGEPSVEELSGVIGELEDFKPDYILALGGGSIIDGAKLAWLFYECPTLESELLYRPFA
                     LPSLRGRAKFAAIPTTVGAGSEVSSAAVMLDSVTNSKKAVVTHDFLPDLVILDPDLVS
                     EVPPKVLKTTVADALSHAIEGYVSLIDNPLMNTFAEQAVSIIYRYRHQFSNDNWSSEM
                     LSELQQAAMFAGWVQNHCIVGLSHAIAHQLGTFNIGHGLANGLLMPAVINFNYREHTA
                     ATKYEQLIYKSGLPNKEALLELFEVLVGEQKTDMHFSEQQLTTIAENALLDPAAKSNP
                     VRFTENDVKEIVKQCL"
     misc_feature    256266..257309
                     /locus_tag="O3Y_01155"
                     /note="Alcohol dehydrogenase, class IV [Energy production
                     and conversion]; Region: EutG; COG1454"
                     /db_xref="CDD:224371"
     misc_feature    order(256305..256307,256476..256484,256491..256493,
                     256500..256502,256608..256613,256617..256619,
                     256674..256679,256731..256733,256755..256757,
                     256776..256778,256788..256790,256983..256985,
                     256995..256997,257022..257024)
                     /locus_tag="O3Y_01155"
                     /note="active site"
                     /db_xref="CDD:173927"
     misc_feature    order(256305..256307,256476..256484,256608..256613,
                     256617..256619,256731..256733,257022..257024)
                     /locus_tag="O3Y_01155"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:173927"
     misc_feature    order(256776..256778,256983..256985,257022..257024)
                     /locus_tag="O3Y_01155"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:173927"
     gene            257303..259780
                     /locus_tag="O3Y_01160"
                     /db_xref="GeneID:11913183"
     CDS             257303..259780
                     /locus_tag="O3Y_01160"
                     /note="COG1541 Coenzyme F390 synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl protein synthase/acyl-CoA reductase RfbN"
                     /protein_id="YP_005332109.1"
                     /db_xref="GI:379740140"
                     /db_xref="GeneID:11913183"
                     /translation="MPVNNENLTSVLDARPFELSEEQKSPLFKANLLAELVHHYQCNE
                     MYRKFCQKNKFDPLVFDGEVADIPPIPVHIFKAIGHKLSSVSDDTIKAKLQSSATSGV
                     PSTILLDKVTARRQTRAMARVMQEVLGPKRRPFCIMDIDPTSPNATNLGARIAAVKGY
                     LNFASTSKYFIDADSPSAPLEFLEQKFVEHLNSLASEEPLIIFGFTFVLYHTVFKTLK
                     DKGISFQLPKGSQVIHIGGWKKLESEKVDKITFNRDIASVLGISPDDVVDIYGFTEQM
                     GLNYPDCKAGWKHIHAYSDVIIRDESNLEVCGPGKVGLLEFVSPLPHSYPGNVVLTDD
                     LGVIEESLCECGKAGKRFKVIGRAKKAEVRGCGDVMSEKLTKKPSYKPLSQQEERLTI
                     YHSPIFLDDTMSASQQLDQIFCSLKRKQKWLANQPLEAILGLINEARKSWSSTPELDP
                     YRHTGLNFLADWCEPNRLKNLLDSALNGQRAFLDNFLPRKDISHSSQKAMPRGIVSHW
                     LSGNVPLLGMFALVQSILSKNANILKVSASESQALPVLLATFKGLSYTTPGGYTIHGD
                     DLLGTLAVVYFDRHQTKIAEKFSANADVRIAWGGREAIESVSGLPKKYNSQDILFGPK
                     LSMMVVGSDALDSDKAIRKLIRRAATDSSVFDQFACASPHTIFVEKGGLITPKEFAEK
                     LASAMDKALVRLPTQVPDIGQANKIRSKIAEYAFIGEYWHDKHLRWTVLFDEGIELVE
                     PTYQRVITVKAVDNVFDVVDSVHEDIQTVGLAMNGEKRLRFANEIMLKGAMRCPDVGY
                     MTHFDSPWDGVVALDRMVRWVTLGGPL"
     misc_feature    257303..258427
                     /locus_tag="O3Y_01160"
                     /note="Acyl-protein synthetase, LuxE; Region: LuxE;
                     pfam04443"
                     /db_xref="CDD:113222"
     misc_feature    258569..259756
                     /locus_tag="O3Y_01160"
                     /note="Acyl-CoA reductase (LuxC); Region: LuxC; pfam05893"
                     /db_xref="CDD:253445"
     misc_feature    order(258824..258838,258857..258859,258902..258904,
                     258908..258913,259091..259102,259109..259111,
                     259118..259123,259163..259171,259280..259282,
                     259529..259531,259682..259684)
                     /locus_tag="O3Y_01160"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:143395"
     misc_feature    order(258836..258838,259163..259165,259271..259273,
                     259280..259282)
                     /locus_tag="O3Y_01160"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143395"
     gene            259850..260416
                     /locus_tag="O3Y_01165"
                     /db_xref="GeneID:11913184"
     CDS             259850..260416
                     /locus_tag="O3Y_01165"
                     /note="COG0110 Acetyltransferase (isoleucine patch
                     superfamily)"
                     /codon_start=1
                     /transl_table=11
                     /product="galactoside O-acetyltransferase"
                     /protein_id="YP_005332110.1"
                     /db_xref="GI:379740141"
                     /db_xref="GeneID:11913184"
                     /translation="MSGNGYYSEDVLKQMGFSSLGKNVKISEKASLYGISRISIGSNV
                     RIDDYVTISAGVGGVEIGSHVHIGVYSSLIGAGKITLEDFVGVSGRVSIYSSSDDYTG
                     MAMSNPTVPEELTKVTSLPVLIKKHSILGAGCVVLPKVIVGEGVSVGALSLVNKSLDD
                     WHIYSGNPIQKFIRKARKPLELEKKLIL"
     misc_feature    259850..260407
                     /locus_tag="O3Y_01165"
                     /note="Acetyltransferase (isoleucine patch superfamily)
                     [General function prediction only]; Region: WbbJ; COG0110"
                     /db_xref="CDD:223188"
     misc_feature    260021..260353
                     /locus_tag="O3Y_01165"
                     /note="Maltose O-acyltransferase (MAT)-like: This family
                     is composed of maltose O-acetyltransferase, galactoside
                     O-acetyltransferase (GAT), xenobiotic acyltransferase
                     (XAT) and similar proteins. MAT and GAT catalyze the
                     CoA-dependent acetylation of the...; Region: LbH_MAT_like;
                     cd04647"
                     /db_xref="CDD:100053"
     misc_feature    order(260039..260041,260045..260047,260069..260071,
                     260099..260101,260105..260107,260123..260125,
                     260141..260149,260228..260230,260234..260236,
                     260243..260245,260300..260302,260348..260350)
                     /locus_tag="O3Y_01165"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:100053"
     misc_feature    order(260045..260047,260051..260053,260141..260143,
                     260147..260149,260234..260236,260240..260245,
                     260258..260260,260294..260299,260312..260317,
                     260342..260347,260351..260353)
                     /locus_tag="O3Y_01165"
                     /note="active site"
                     /db_xref="CDD:100053"
     misc_feature    order(260045..260047,260051..260053,260141..260143)
                     /locus_tag="O3Y_01165"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100053"
     misc_feature    order(260141..260143,260147..260149,260234..260236,
                     260240..260245,260258..260260,260288..260290,
                     260294..260299,260312..260317,260336..260338,
                     260342..260347,260351..260353)
                     /locus_tag="O3Y_01165"
                     /note="CoA binding site [chemical binding]; other site"
                     /db_xref="CDD:100053"
     misc_feature    260804..261712
                     /note="potential frameshift: common BLAST hit:
                     gi|54302878|ref|YP_132871.1| RfbQRSO155-1"
     gene            261725..261931
                     /locus_tag="O3Y_01180"
                     /db_xref="GeneID:11913185"
     CDS             261725..261931
                     /locus_tag="O3Y_01180"
                     /note="COG5433 Transposase"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="YP_005332111.1"
                     /db_xref="GI:379740142"
                     /db_xref="GeneID:11913185"
                     /translation="MDWSLDTAFCEDNSRIRADDRAEAFARIRQICLNLLKSEPTFKG
                     GIKRKRMNCAMNEKYLSKVLESLT"
     gene            262067..262330
                     /locus_tag="O3Y_01185"
                     /db_xref="GeneID:11913186"
     CDS             262067..262330
                     /locus_tag="O3Y_01185"
                     /codon_start=1
                     /transl_table=11
                     /product="RfbT-likeprotein"
                     /protein_id="YP_005332112.1"
                     /db_xref="GI:379740143"
                     /db_xref="GeneID:11913186"
                     /translation="MLFFTLILFKIEVVMKHLIKNYVQKLIKTELDAIQSKSVHDNRN
                     FIYNGEFLILESEFGWHCFPRVQLNHALSYKNPNCSGIVNLVT"
     misc_feature    262109..>262300
                     /locus_tag="O3Y_01185"
                     /note="Methyltransferase FkbM domain; Region:
                     Methyltransf_21; cl17387"
                     /db_xref="CDD:266660"
     gene            262337..262681
                     /locus_tag="O3Y_01190"
                     /db_xref="GeneID:11913187"
     CDS             262337..262681
                     /locus_tag="O3Y_01190"
                     /note="COG2963 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase OrfAB subunit A"
                     /protein_id="YP_005332113.1"
                     /db_xref="GI:379740144"
                     /db_xref="GeneID:11913187"
                     /translation="MISSPHKLTGDIMTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAA
                     QAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKA
                     TALLMSDSLNNS"
     misc_feature    262373..262666
                     /locus_tag="O3Y_01190"
                     /note="Transposase and inactivated derivatives [DNA
                     replication, recombination, and repair]; Region: COG2963"
                     /db_xref="CDD:225511"
     misc_feature    262379..262609
                     /locus_tag="O3Y_01190"
                     /note="Arsenical Resistance Operon Repressor and similar
                     prokaryotic, metal regulated homodimeric repressors. ARSR
                     subfamily of helix-turn-helix bacterial transcription
                     regulatory proteins (winged helix topology). Includes
                     several proteins that appear to...; Region: HTH_ARSR;
                     cl21459"
                     /db_xref="CDD:271879"
     gene            262678..263550
                     /locus_tag="O3Y_01195"
                     /db_xref="GeneID:11913188"
     CDS             262678..263550
                     /locus_tag="O3Y_01195"
                     /note="COG2801 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase OrfAB subunit B"
                     /protein_id="YP_005332114.1"
                     /db_xref="GI:379740145"
                     /db_xref="GeneID:11913188"
                     /translation="MIIKKLKQSHSVKILCEVFNVHRSSYHYWLKRPALINAETIKLR
                     SLISEAHAASNGSAGARTIADIVTNQGVKLSRYRATKLMRTLGLVSCQEPKHRYRKAS
                     QEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLS
                     PDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCW
                     DNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESE
                     RLYWENSKTVANFS"
     misc_feature    262732..263529
                     /locus_tag="O3Y_01195"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     misc_feature    262801..262977
                     /locus_tag="O3Y_01195"
                     /note="HTH-like domain; Region: HTH_21; pfam13276"
                     /db_xref="CDD:257619"
     misc_feature    263029..263379
                     /locus_tag="O3Y_01195"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:250040"
     misc_feature    263293..263493
                     /locus_tag="O3Y_01195"
                     /note="Integrase core domain; Region: rve_3; pfam13683"
                     /db_xref="CDD:257986"
     gene            263574..264230
                     /locus_tag="O3Y_01200"
                     /db_xref="GeneID:11913189"
     CDS             263574..264230
                     /locus_tag="O3Y_01200"
                     /note="COG0500 SAM-dependent methyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="rfbT protein"
                     /protein_id="YP_005332115.1"
                     /db_xref="GI:379740146"
                     /db_xref="GeneID:11913189"
                     /translation="MRHWIVNHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPL
                     TEMENSIRMNVQLNNPLVEFHHFGCAIGENEGENIFEVYEFDNRVSSLYFSKNTDIAD
                     KVKNSQVLVRKLSSLDISPTNSVVIKIDAEGAEIEILNQIYEFTEKHNGIEYYICFEF
                     AMGHIQRSNRTFDEIFNIINSKFGSKAYFIHPLSSAEHPEFNKATQDINGNICFKYVS
                     "
     misc_feature    <263574..264227
                     /locus_tag="O3Y_01200"
                     /note="Methyltransferase FkbM domain; Region:
                     Methyltransf_21; cl17387"
                     /db_xref="CDD:266660"
     gene            complement(264265..265377)
                     /locus_tag="O3Y_01205"
                     /db_xref="GeneID:11913190"
     CDS             complement(264265..265377)
                     /locus_tag="O3Y_01205"
                     /note="COG0438 Glycosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein RfbV"
                     /protein_id="YP_005332116.1"
                     /db_xref="GI:379740147"
                     /db_xref="GeneID:11913190"
                     /translation="MKVLHVYRTCYPETKGGVEQVIRFIASGTKPLGIETKILTLSDN
                     QTSSYYCEGTEIISVKKSIEISSNGFSWKLIRQFKKLSKWADIIHYHYPWPTGDFLSL
                     FGSSNPSIVTYHSDIIRQKCLKKLYQPLESHFLNQANILVATSPQYAHTSENLLRHKN
                     KVKIIPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVLRYYKGLDFLLEAAKINQL
                     PVIIAGDGPERVKLESYIAKHNLENVKLVGFISEEDKVILHLLSKAFVFPSHLRSEAF
                     GISLIEAQMYCKAIISSDIGTGSSYVNINGETGLVVPPADSQSFSDAMLKIEHDTKLC
                     EKLGINARKRFEQEFTAHRYAQSYTKLYSELFGNVC"
     misc_feature    complement(264274..265377)
                     /locus_tag="O3Y_01205"
                     /note="Glycosyltransferase [Cell envelope biogenesis,
                     outer membrane]; Region: RfaG; COG0438"
                     /db_xref="CDD:223515"
     misc_feature    complement(264313..265374)
                     /locus_tag="O3Y_01205"
                     /note="This family is most closely related to the GT1
                     family of glycosyltransferases. Glycosyltransferases
                     catalyze the transfer of sugar moieties from activated
                     donor molecules to specific acceptor molecules, forming
                     glycosidic bonds. The acceptor molecule can...; Region:
                     GT1_like_4; cd03795"
                     /db_xref="CDD:99969"
     misc_feature    complement(order(264541..264543,264613..264615,
                     264781..264789,265327..265329))
                     /locus_tag="O3Y_01205"
                     /note="putative ADP-binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:99969"
     gene            complement(265385..267250)
                     /locus_tag="O3Y_01210"
                     /db_xref="GeneID:11913191"
     CDS             complement(265385..267250)
                     /locus_tag="O3Y_01210"
                     /note="COG1086 Predicted nucleoside-diphosphate sugar
                     epimerases"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-transferase"
                     /protein_id="YP_005332117.1"
                     /db_xref="GI:379740148"
                     /db_xref="GeneID:11913191"
                     /translation="MFTPIQLLLSAQRHHKRMITLLYDVFALMFSLYAAIALRLDTLA
                     FTFSFPEFLSMMTTVGVTLYCFVRLGMYRAVLRYMMLPAIGYIFLSVIISAVTLALSG
                     FFFQAFIPRSVPFIYAGLATLTLGGPRIFIRTIYYHYYKRQKPNVFIYGAGSTGRDLA
                     YALIQGDEYHPVIFLDDDPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK
                     NTRIKLLERLSHWPIEIQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQ
                     KNITEKSVMVTGAGGSIGSELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLK
                     LNTKIVAALGSVQRENRVKKLMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTL
                     ACANAAIEAGVKNFTLISTDKAVRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFG
                     NVLGSSGSVVPLFKKQIRAGGPVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFV
                     LDMGEPVKIVDLAKRMIHLMGMKEFCDGRSDEGDIEIKFTGLRPGEKLYEELLIGENV
                     EGTSHQKIMTACEEKLSWDAMEDLLTELDVCCHNFDVECIKRILLDAPTGYSPQK"
     misc_feature    complement(265388..267196)
                     /locus_tag="O3Y_01210"
                     /note="Predicted nucleoside-diphosphate sugar epimerases
                     [Cell envelope biogenesis, outer membrane / Carbohydrate
                     transport and metabolism]; Region: COG1086"
                     /db_xref="CDD:224011"
     misc_feature    complement(266534..267046)
                     /locus_tag="O3Y_01210"
                     /note="Short-chain dehydrogenases/reductases (SDR);
                     Region: SDR; cl21454"
                     /db_xref="CDD:271874"
     misc_feature    complement(<266567..266806)
                     /locus_tag="O3Y_01210"
                     /note="Left-handed parallel beta-Helix (LbetaH or LbH)
                     domain: The alignment contains 5 turns, each containing
                     three imperfect tandem repeats of a hexapeptide repeat
                     motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
                     hexapeptide repeats are often enzymes...; Region: LbetaH;
                     cl00160"
                     /db_xref="CDD:271430"
     misc_feature    complement(265526..266407)
                     /locus_tag="O3Y_01210"
                     /note="UDP-Glcnac (UDP-linked N-acetylglucosamine)
                     inverting 4,6-dehydratase, extended (e) SDRs; Region:
                     UDP_invert_4-6DH_SDR_e; cd05237"
                     /db_xref="CDD:187548"
     misc_feature    complement(order(265883..265888,265895..265906,
                     265976..265978,266024..266026,266093..266095,
                     266138..266140,266144..266152,266213..266221,
                     266309..266314,266372..266383,266387..266389))
                     /locus_tag="O3Y_01210"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:187548"
     misc_feature    complement(order(265865..265867,265880..265885,
                     266096..266098,266105..266107,266114..266116,
                     266126..266128,266135..266146,266198..266200,
                     266207..266209,266216..266227,266279..266281,
                     266291..266293,266303..266305,266309..266311))
                     /locus_tag="O3Y_01210"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187548"
     misc_feature    complement(order(265589..265591,265598..265600,
                     265700..265702,265805..265807,265811..265813,
                     265823..265831,265862..265867,265874..265882,
                     265898..265903,265988..265990,266012..266020,
                     266138..266140))
                     /locus_tag="O3Y_01210"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187548"
     misc_feature    complement(order(265976..265978,265988..265990,
                     266018..266020,266090..266092))
                     /locus_tag="O3Y_01210"
                     /note="active site"
                     /db_xref="CDD:187548"
     gene            complement(267311..267427)
                     /locus_tag="O3Y_01215"
                     /db_xref="GeneID:11913192"
     CDS             complement(267311..267427)
                     /locus_tag="O3Y_01215"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332118.1"
                     /db_xref="GI:379740149"
                     /db_xref="GeneID:11913192"
                     /translation="MVFDYLVPSYPIFLQNYANDQHHESGKRYSSKLQFGRY"
     gene            267403..268374
                     /locus_tag="O3Y_01220"
                     /db_xref="GeneID:11913193"
     CDS             267403..268374
                     /locus_tag="O3Y_01220"
                     /note="COG0451 Nucleoside-diphosphate-sugar epimerases"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase"
                     /protein_id="YP_005332119.1"
                     /db_xref="GI:379740150"
                     /db_xref="GeneID:11913193"
                     /translation="MEPDNQTPLKILVTGASGFVGLRVLTQAQNIGYALVAQSRSQQP
                     YSFEQVLLDITPNTDWERALVGVDCVVHCAARVHQMQETEADALKAYRDVNTQGTLNL
                     AKQAVSAGVKRFIFLSSIKVNGEQTKAGSAFQHDDQHIPSDPYGLSKYEAEQQLLELA
                     AETGLEVVIIRPPLVYGEGVKANFLSMMNWVKKQIPLPLGAVGNMRSLVYLDNLVDLI
                     LVCCQHPKAAGEIFLVSDNHDVSLTTLLRTIAQAMQIRPRLLPIPQTGLQWLLRLLGK
                     PELGQRLCGNLQLDIAHTQKTLHWSPPVSFEQGIARTVNFYLSQSSK"
     misc_feature    267430..268371
                     /locus_tag="O3Y_01220"
                     /note="Nucleoside-diphosphate-sugar epimerases [Cell
                     envelope biogenesis, outer membrane / Carbohydrate
                     transport and metabolism]; Region: WcaG; COG0451"
                     /db_xref="CDD:223528"
     misc_feature    267430..268341
                     /locus_tag="O3Y_01220"
                     /note="UDP-glucose 4 epimerase, subgroup 4, extended (e)
                     SDRs; Region: UDP_G4E_4_SDR_e; cd05232"
                     /db_xref="CDD:187543"
     misc_feature    order(267445..267447,267451..267462,267517..267525,
                     267619..267627,267682..267684,267751..267759,
                     267835..267837,267847..267849,267916..267927)
                     /locus_tag="O3Y_01220"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187543"
     misc_feature    order(267685..267687,267757..267759,267835..267837,
                     267847..267849)
                     /locus_tag="O3Y_01220"
                     /note="active site"
                     /db_xref="CDD:187543"
     misc_feature    order(267757..267759,267835..267837,267922..267924,
                     267961..267963,267991..267993,268018..268020)
                     /locus_tag="O3Y_01220"
                     /note="putative substrate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187543"
     gene            268382..268936
                     /locus_tag="O3Y_01225"
                     /db_xref="GeneID:11913194"
     CDS             268382..268936
                     /locus_tag="O3Y_01225"
                     /note="COG2148 Sugar transferases involved in
                     lipopolysaccharide synthesis"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid carrier :
                     UDP-N-acetylgalactosaminyltransferase"
                     /protein_id="YP_005332120.1"
                     /db_xref="GI:379740151"
                     /db_xref="GeneID:11913194"
                     /translation="MVIRFLDFIFALAGLLLLWPVLLIVCILGYFDTGSPIFCQQRVG
                     KNQRPFTLIKFRTMPKNTASVATHLVGASSVTRLGQFLRKTKLDELPQLINVLKGEMS
                     LVGPRPCLFNQQDLIAERESRGVFTVLPGITGLAQVNEVDMSTPVKLAELDQQMIQTL
                     NLKNYFTYIIQTVLGKGAGDRVKP"
     misc_feature    268382..268903
                     /locus_tag="O3Y_01225"
                     /note="Sugar transferases involved in lipopolysaccharide
                     synthesis [Cell envelope biogenesis, outer membrane];
                     Region: WcaJ; COG2148"
                     /db_xref="CDD:225059"
     gene            269130..270446
                     /locus_tag="O3Y_01230"
                     /db_xref="GeneID:11913195"
     CDS             269130..270446
                     /locus_tag="O3Y_01230"
                     /note="COG1236 Predicted exonuclease of the beta-lactamase
                     fold involved in RNA processing"
                     /codon_start=1
                     /transl_table=11
                     /product="metallo-beta-lactamase family protein
                     RNA-specific"
                     /protein_id="YP_005332121.1"
                     /db_xref="GI:379740152"
                     /db_xref="GeneID:11913195"
                     /translation="MEVVHHGGKASVTGSCHELRADGQALLIDCGLFQGADERPLAVE
                     FALGHVDALILTHAHIDHIGRLPWLLAAGLKQPIYSTAATAELVPLMLEDGLKLQLGM
                     SPKQSERVLTEVRRLLRVQDYQKWFAVQPKRADSLWVRFQPAGHILGSAYVEIRRPNG
                     EVVVFSGDLGPSHTPLLPDPQSPERADYLFIETTYGDKQHEDVQSRGQRLRAMIERSL
                     TDGGAILIPAFSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRFKQL
                     WGREAKARLQMHRHPLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGRI
                     MDYLKALLPDKRTDLILAGFQAEGTLGRSIQSGQPSVWIEGTEVEVNAHIHTMSGYSA
                     HADKADLLRFITGIPEKPKQVHLIHGEAPAKQAFAAELTQLGYSVL"
     misc_feature    269130..270440
                     /locus_tag="O3Y_01230"
                     /note="Predicted exonuclease of the beta-lactamase fold
                     involved in RNA processing [Translation, ribosomal
                     structure and biogenesis]; Region: YSH1; COG1236"
                     /db_xref="CDD:224157"
     misc_feature    269163..269648
                     /locus_tag="O3Y_01230"
                     /note="Metallo-beta-lactamase superfamily; Region:
                     Lactamase_B; pfam00753"
                     /db_xref="CDD:250108"
     misc_feature    269829..270221
                     /locus_tag="O3Y_01230"
                     /note="Beta-Casp domain; Region: Beta-Casp; smart01027"
                     /db_xref="CDD:214983"
     misc_feature    270258..270392
                     /locus_tag="O3Y_01230"
                     /note="RNA-metabolizing metallo-beta-lactamase; Region:
                     RMMBL; pfam07521"
                     /db_xref="CDD:254257"
     gene            complement(270708..271946)
                     /locus_tag="O3Y_01235"
                     /db_xref="GeneID:11913196"
     CDS             complement(270708..271946)
                     /locus_tag="O3Y_01235"
                     /note="COG0668 Small-conductance mechanosensitive channel"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332122.1"
                     /db_xref="GI:379740153"
                     /db_xref="GeneID:11913196"
                     /translation="MLETLTLWLQKFDIEIERVIQLAEALGLIAAISIAIHLVLHRGV
                     LLWLKRHTHHEQSVWRNALFKEHLFSRVALLIQGVVIAVQTQLWLSPNTFAYDVLHTL
                     TSLWIVVFGMLATYSVLNVLELLISRTQVGKNLPTRGILQSIKLIVFIIAALFFTSIL
                     IGKSPVILLSGLGAMTAVFMLVFKDPILGLVAGVQLSANKMLSVGDWLEMPKYGADGS
                     VIDISLTTVKVQNWDKTITTIPSYALISDSFKNWKGMQESGGRRIKRSILIDATSVHF
                     LTEEEKQALKKAQLLEPYLVEKEQEISSYNQQKHWDLACRINGRRLTNIGSFRAYLER
                     YLRTHPNIHQDMTLMVRQLAPTHDGISLEVYCFTSTTVWVEYERIQSDIFDHIYAVLP
                     EFDLRVSQAPTGNDFRALRG"
     misc_feature    complement(270741..271859)
                     /locus_tag="O3Y_01235"
                     /note="Small-conductance mechanosensitive channel [Cell
                     envelope biogenesis, outer membrane]; Region: MscS;
                     COG0668"
                     /db_xref="CDD:223740"
     misc_feature    complement(270753..271517)
                     /locus_tag="O3Y_01235"
                     /note="Mechanosensitive ion channel; Region: MS_channel;
                     pfam00924"
                     /db_xref="CDD:250229"
     gene            complement(272001..272573)
                     /locus_tag="O3Y_01240"
                     /db_xref="GeneID:11913197"
     CDS             complement(272001..272573)
                     /locus_tag="O3Y_01240"
                     /note="COG1573 Uracil-DNA glycosylase"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="YP_005332123.1"
                     /db_xref="GI:379740154"
                     /db_xref="GeneID:11913197"
                     /translation="MLESLLTEIRQCTVCEPHLPLGANPVIRAHPAAKILIIGQAPGT
                     KVHQTSIPWNDASGERLRQWLGLDREAFYCEENIAIMPMGLCYPGKGRSGDLPPRKEC
                     APLWHAKVLEQLPNRQLTLLIGQYAQHYYLSDKPSTLTETVQQWQRWAPSVLPLPHPS
                     PRNTLWLKNHPWFEQDIVPYLRQRVKQVLT"
     misc_feature    complement(272007..272519)
                     /locus_tag="O3Y_01240"
                     /note="Uncharacterized subfamily of Uracil-DNA
                     glycosylases; Region: UDG_like_1; cd10033"
                     /db_xref="CDD:198431"
     misc_feature    complement(order(272100..272102,272328..272330,
                     272451..272459))
                     /locus_tag="O3Y_01240"
                     /note="putative uracil binding site [chemical binding];
                     other site"
                     /db_xref="CDD:198431"
     misc_feature    complement(order(272094..272096,272100..272105,
                     272196..272204,272445..272447,272451..272456))
                     /locus_tag="O3Y_01240"
                     /note="putative active site [active]"
                     /db_xref="CDD:198431"
     gene            complement(272573..273496)
                     /locus_tag="O3Y_01245"
                     /db_xref="GeneID:11913198"
     CDS             complement(272573..273496)
                     /locus_tag="O3Y_01245"
                     /note="COG0111 Phosphoglycerate dehydrogenase and related
                     dehydrogenases"
                     /codon_start=1
                     /transl_table=11
                     /product="D-isomer specific 2-hydroxyacid dehydrogenase
                     family protein"
                     /protein_id="YP_005332124.1"
                     /db_xref="GI:379740155"
                     /db_xref="GeneID:11913198"
                     /translation="MNNFHQLYILTEHDEHYREQILERQLEGLALTEDRAKATILLAA
                     PPMAARRLDEFPRLQWLHSAYAGVDTLMDPKLRKNYLLTNVKGIFGHLIAEYVMGYAI
                     QYQRDFRLYQTQQAERLWQPRPYSSLANQTLVILGTGSIGSHLAHVAKQFGLRVVGVN
                     RTGIPAKEGHFDATYHISELPAALMRADLLVNTLPNTPATEGLLNQENLRHCHQALLF
                     NVGRGKTLVEQGLPDLIAAGHIRHAFLDVFIKEPLAQDHPFWDNPAITITPHIAAVSF
                     PEQVVDIFADNYQRWCDNLPLRNQIDFEKGY"
     misc_feature    complement(272576..273487)
                     /locus_tag="O3Y_01245"
                     /note="Phosphoglycerate dehydrogenase and related
                     dehydrogenases [Amino acid transport and metabolism];
                     Region: SerA; COG0111"
                     /db_xref="CDD:223189"
     misc_feature    complement(272576..273484)
                     /locus_tag="O3Y_01245"
                     /note="Putative D-isomer specific 2-hydroxyacid
                     dehydrogenase; Region: 2-Hacid_dh_1; cd05300"
                     /db_xref="CDD:240625"
     misc_feature    complement(order(272678..272683,272687..272689,
                     272756..272761,272831..272839,272897..272899,
                     272912..272920,273014..273022,273074..273088,
                     273218..273220,273230..273232,273299..273301))
                     /locus_tag="O3Y_01245"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:240625"
     misc_feature    complement(order(272678..272680,272687..272689,
                     272834..272839,273074..273076,273230..273232,
                     273299..273301))
                     /locus_tag="O3Y_01245"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:240625"
     misc_feature    complement(order(272687..272689,272744..272746,
                     272831..272833))
                     /locus_tag="O3Y_01245"
                     /note="catalytic site [active]"
                     /db_xref="CDD:240625"
     gene            273570..274157
                     /locus_tag="O3Y_01250"
                     /db_xref="GeneID:11913199"
     CDS             273570..274157
                     /locus_tag="O3Y_01250"
                     /note="COG3068 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332125.1"
                     /db_xref="GI:379740156"
                     /db_xref="GeneID:11913199"
                     /translation="MLQNPLQLRLEKFEPWQQITFMACLCERMYPNYAMFCEHTQFAE
                     ARIYRDILDSVWELMTVKNAKVNFEHQLEKLEELIPTSDAFDLYAVYPAIDACEGLAT
                     LLHGLLDRDDLAESMIKVSQISVQTVAQLEEAQTGEAITNDNQKENEAVCAEWDVQWA
                     IFRPLREAVERDIDLIKDLRKELREEGVSNIGVEL"
     misc_feature    273570..274154
                     /locus_tag="O3Y_01250"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG3068"
                     /db_xref="CDD:225610"
     gene            274520..275719
                     /locus_tag="O3Y_01255"
                     /db_xref="GeneID:11913200"
     CDS             274520..275719
                     /locus_tag="O3Y_01255"
                     /note="COG1482 Phosphomannose isomerase"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="YP_005332126.1"
                     /db_xref="GI:379740157"
                     /db_xref="GeneID:11913200"
                     /translation="MNTAIPAPFFIMHNVIQSYAWGSIDSINQLFDIPNPKGEPQAEV
                     WMGTHPNGCSYVEFSGEKIKLSTLIEQKKTDFLSIQTVEQFGELPYLFKILAANQALS
                     IQVHPSKAEAEEGFARENAQGILINATNRNYKDPNHKPELVYALTNYQAMNGFRPLSD
                     IISLFSALAIDEIASLLSHLKRNQNETGLEHFFTKLLSLCGEKKRRVLEQLLSYARSH
                     AKQPIFALIEELATQYPNDIGLFAPLMLHVLTLQPGEAMFLDARTPHAYLKGTALEIM
                     ANSDNVLRAGLTPKHIDVVELAKCTLFKEKSEATLLLTPIQQGDMLSFPVPVADFKFA
                     IFPRPQQANITVSSAEILLPIDCDATLVSPCGTVLTVHKGQSVFIPAYTEKYCLSAAG
                     RVARAYN"
     misc_feature    274538..275716
                     /locus_tag="O3Y_01255"
                     /note="Phosphomannose isomerase [Carbohydrate transport
                     and metabolism]; Region: ManA; COG1482"
                     /db_xref="CDD:224399"
     misc_feature    274553..275716
                     /locus_tag="O3Y_01255"
                     /note="Alpha-Mannosidase Binding Domain of Atg19/34;
                     Region: ABD; cl19057"
                     /db_xref="CDD:267410"
     gene            275778..276665
                     /locus_tag="O3Y_01260"
                     /db_xref="GeneID:11913201"
     CDS             275778..276665
                     /locus_tag="O3Y_01260"
                     /note="COG1940 Transcriptional regulator/sugar kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="YP_005332127.1"
                     /db_xref="GI:379740158"
                     /db_xref="GeneID:11913201"
                     /translation="MLIGLDIGGTKIEICVLDKQGSMLYRQRIATPDNYSQFVDCVCS
                     LIVDAEQATQPVDSIGIGLPGAVSPVTGLIKNANCTFLNGQDLSSDLQYRLGREVKLA
                     NDANCFALSEAIDGAGKESMVVFGAILGTGCGGSIVVNRQVLVGPNAICGEWGHNPLP
                     GYHLEQDGAARYCYCGRQNCIERFISGSGFQDSYQALTGECITASEIMKRYKQQEPEA
                     IHCYTQLIDHMARSFAGLVNVLDPDIIVLGGGLSNIDELYRDLPTATARHVFSDSAQV
                     HFAKAVFGDSSGIRGAAWL"
     misc_feature    275778..276662
                     /locus_tag="O3Y_01260"
                     /note="Transcriptional regulator/sugar kinase
                     [Transcription / Carbohydrate transport and metabolism];
                     Region: NagC; COG1940"
                     /db_xref="CDD:224851"
     misc_feature    275784..>276194
                     /locus_tag="O3Y_01260"
                     /note="Nucleotide-Binding Domain of the sugar
                     kinase/HSP70/actin superfamily; Region:
                     NBD_sugar-kinase_HSP70_actin; cd00012"
                     /db_xref="CDD:212657"
     misc_feature    order(275793..275804,275808..275810,275814..275816,
                     276087..276089,276159..276170)
                     /locus_tag="O3Y_01260"
                     /note="nucleotide binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:212657"
     gene            complement(277013..278071)
                     /locus_tag="O3Y_01265"
                     /db_xref="GeneID:11913202"
     CDS             complement(277013..278071)
                     /locus_tag="O3Y_01265"
                     /note="COG1253 Hemolysins and related proteins containing
                     CBS domains"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332128.1"
                     /db_xref="GI:379740159"
                     /db_xref="GeneID:11913202"
                     /translation="MFLLAIYISVAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAA
                     NRLAGLKADIDRPLASILTLNTIAHTIGAATAGAQAAVVFGSQWLGLFSAVLTLGILV
                     LSEIVPKTIGATYWRELAPQASLVLRWMVWALTPFVWFSEQITKRLARKVEAPKLRDE
                     ISAMAMLANENGEFAEGESKMLNNLLAIQNVPVTQVMTPRPVLFRVSADLTIDEFIEQ
                     HRDTPFSRPLIYSEEKDNIVGFVHRLELFKEQQNGQGNLLLGDVMRPIHVVLNTLSLP
                     KAFDQMMQKRLQLSVVVDEYGSVQGLLTLEDIFEHLLGEEIIDEADRTTDMQQLATER
                     WEHWKRQHRMIESRDEVE"
     misc_feature    complement(277538..278065)
                     /locus_tag="O3Y_01265"
                     /note="Domain of unknown function DUF21; Region: DUF21;
                     pfam01595"
                     /db_xref="CDD:250731"
     misc_feature    complement(277145..277495)
                     /locus_tag="O3Y_01265"
                     /note="FOG: CBS domain [General function prediction only];
                     Region: COG0517"
                     /db_xref="CDD:223591"
     misc_feature    complement(277142..277471)
                     /locus_tag="O3Y_01265"
                     /note="This cd contains two tandem repeats of the
                     cystathionine beta-synthase (CBS pair) domains associated
                     with the CorC_HlyC domain. CorC_HlyC is a transporter
                     associated domain. This small domain is found in Na+/H+
                     antiporters, in proteins involved in...; Region:
                     CBS_pair_CorC_HlyC_assoc; cd04590"
                     /db_xref="CDD:239963"
     gene            278443..278715
                     /locus_tag="O3Y_01270"
                     /db_xref="GeneID:11913203"
     CDS             278443..278715
                     /locus_tag="O3Y_01270"
                     /note="COG0776 Bacterial nucleoid DNA-binding protein"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU"
                     /protein_id="YP_005332129.1"
                     /db_xref="GI:379740160"
                     /db_xref="GeneID:11913203"
                     /translation="MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQL
                     IGFGTFKVNHRSARTGRNPKTGEEIKIAAANVPAFVAGKALKDAIK"
     misc_feature    278446..278703
                     /locus_tag="O3Y_01270"
                     /note="histone-like DNA-binding protein HU; Region: HU;
                     cd13831"
                     /db_xref="CDD:259853"
     misc_feature    order(278458..278460,278467..278472,278479..278481,
                     278506..278517,278521..278529,278533..278541,
                     278545..278550,278560..278574,278581..278583,
                     278665..278673,278677..278679,278683..278685,
                     278695..278700)
                     /locus_tag="O3Y_01270"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:259853"
     misc_feature    order(278599..278601,278605..278610,278614..278616,
                     278620..278631,278644..278649,278653..278655)
                     /locus_tag="O3Y_01270"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:259853"
     gene            278761..279450
                     /locus_tag="O3Y_01275"
                     /db_xref="GeneID:11913204"
     CDS             278761..279450
                     /locus_tag="O3Y_01275"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332130.1"
                     /db_xref="GI:379740161"
                     /db_xref="GeneID:11913204"
                     /translation="MKQQLSFLFLLSGLLAGCSSTPNPNLEQINQFTGGKTIGDATSF
                     YWYTESFQKPSSASDYVTSGDYGSYQTSYRWEEGQVREIRREGEHLDGKKLVPFRVHI
                     RFSKEGEAVYQQYRLGGKVLPMNEEQLAHYVLQAKAVAEATKEQDKQGLELIQGYWNG
                     KTFETCQGVEYQRVEFNQSLPSFVFNRLASIESYVAFLGKIRNGKVHIDELLLLDDAG
                     HDCVKEPELLD"
     misc_feature    278857..279438
                     /locus_tag="O3Y_01275"
                     /note="Protein of unknown function (DUF1481); Region:
                     DUF1481; pfam07356"
                     /db_xref="CDD:148775"
     gene            complement(279550..280839)
                     /locus_tag="O3Y_01280"
                     /db_xref="GeneID:11913205"
     CDS             complement(279550..280839)
                     /locus_tag="O3Y_01280"
                     /EC_number="6.3.4.13"
                     /note="COG0151 Phosphoribosylamine-glycine ligase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="YP_005332131.1"
                     /db_xref="GI:379740162"
                     /db_xref="GeneID:11913205"
                     /translation="MQVLIIGSGGREHALAWKVAQNPQVDTIYVAPGNAGTALEHKVQ
                     NVNIGITDIPALVAFAQDKAIELTIVGPEAPLVIGVVDAFRAAGLPIFGPTQGAAQLE
                     GSKAFTKDFLARHNIPTAAYANFTEIEPALAYVREKGAPIVVKADGLAAGKGVIVAMT
                     LQEAEDAIQDMLAGNAFGSAGSRVVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRV
                     GDADTGPNTGGMGAYSPAPVVTQDVHDRVMREVIDPTVRGMAAEGNTYTGFLYAGLMI
                     DSTGAPKVIEYNCRFGDPETQPIMMRLQSDLVELCQAAIAGKLDQVESKWDPRASIGV
                     VLAAGGYPGDYAKGEVISGLPTQESAGQKVFHAGTETQGDQVVTNGGRVLCATALGNT
                     VLEAQQRAYQLADQIHWNGMFCRRDIGYRAIAREQAK"
     misc_feature    complement(279565..280839)
                     /locus_tag="O3Y_01280"
                     /note="phosphoribosylamine--glycine ligase; Provisional;
                     Region: PRK00885"
                     /db_xref="CDD:234856"
     misc_feature    complement(280534..280833)
                     /locus_tag="O3Y_01280"
                     /note="Phosphoribosylglycinamide synthetase, N domain;
                     Region: GARS_N; pfam02844"
                     /db_xref="CDD:251569"
     misc_feature    complement(279952..280533)
                     /locus_tag="O3Y_01280"
                     /note="Phosphoribosylglycinamide synthetase, ATP-grasp (A)
                     domain; Region: GARS_A; pfam01071"
                     /db_xref="CDD:250341"
     misc_feature    complement(279571..279852)
                     /locus_tag="O3Y_01280"
                     /note="Phosphoribosylglycinamide synthetase, C domain;
                     Region: GARS_C; pfam02843"
                     /db_xref="CDD:251568"
     gene            complement(280898..282490)
                     /gene="purH"
                     /locus_tag="O3Y_01285"
                     /db_xref="GeneID:11913206"
     CDS             complement(280898..282490)
                     /gene="purH"
                     /locus_tag="O3Y_01285"
                     /EC_number="2.1.2.3"
                     /note="COG0138 AICAR transformylase/IMP cyclohydrolase
                     PurH (only IMP cyclohydrolase domain in Aful)"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="YP_005332132.1"
                     /db_xref="GI:379740163"
                     /db_xref="GeneID:11913206"
                     /translation="MNNARPIHRALLSVSDKTGIVEFAKALAERGVELLSTGGTARLL
                     AEQGLTVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAVMNTHGIQPIDMVV
                     VNLYPFAQTVANPNCTLADAVENIDIGGPTMVRSAAKNHKDVAIVVNAHDYDRVIREM
                     DANHNSLTLATRFDLAIAAFEHTAAYDGMIANYFGTLVPSYGDNKEGDEESKFPRTFN
                     AQFIKKQDMRYGENSHQAAAFYVEANPQEASVATARQIQGKALSYNNIADTDAALECV
                     KEFSEPACVIVKHANPCGVALGDDLLQAYNRAYQTDPTSAFGGIIAFNRELDGETARA
                     IIERQFVEVIIAPKVSQAAIDIVAAKQNVRLLECGEWQGQTTGFDLKRVNGGLLVQDR
                     DQGMVAQDDLQVVSTRQPSDAELKDALFCWKVAKYVKSNAIVYAKGDMTIGIGAGQMS
                     RVYSAKIAGIKAADEGLEVAGSVMASDAFFPFRDGIDAAAEAGITCVIQPGGSMRDQE
                     VIDAANEHGMAMIFTGMRHFRH"
     misc_feature    complement(280901..282478)
                     /gene="purH"
                     /locus_tag="O3Y_01285"
                     /note="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase; Provisional; Region:
                     purH; PRK00881"
                     /db_xref="CDD:234854"
     misc_feature    complement(281909..282466)
                     /gene="purH"
                     /locus_tag="O3Y_01285"
                     /note="Inosine monophosphate cyclohydrolase domain. This
                     is the N-terminal domain in the purine biosynthesis
                     pathway protein ATIC (purH). The bifunctional ATIC protein
                     contains a C-terminal  ATIC formylase domain that
                     formylates...; Region: IMPCH; cd01421"
                     /db_xref="CDD:238709"
     misc_feature    complement(order(282110..282112,282179..282181,
                     282281..282286,282371..282373,282380..282382,
                     282440..282442,282446..282448))
                     /gene="purH"
                     /locus_tag="O3Y_01285"
                     /note="purine monophosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:238709"
     misc_feature    complement(order(281909..281911,281918..281923,
                     281927..281935,281957..281965,281972..281974,
                     282074..282076,282083..282088,282098..282100,
                     282107..282115,282251..282253,282260..282265,
                     282272..282280,282287..282292,282299..282304,
                     282311..282313))
                     /gene="purH"
                     /locus_tag="O3Y_01285"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238709"
     misc_feature    complement(order(282110..282112,282284..282286))
                     /gene="purH"
                     /locus_tag="O3Y_01285"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:238709"
     misc_feature    complement(281105..282082)
                     /gene="purH"
                     /locus_tag="O3Y_01285"
                     /note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
                     smart00798"
                     /db_xref="CDD:214822"
     gene            282779..283177
                     /gene="zntR"
                     /locus_tag="O3Y_01290"
                     /db_xref="GeneID:11913207"
     CDS             282779..283177
                     /gene="zntR"
                     /locus_tag="O3Y_01290"
                     /note="COG0789 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-responsive transcriptional regulator"
                     /protein_id="YP_005332133.1"
                     /db_xref="GI:379740164"
                     /db_xref="GeneID:11913207"
                     /translation="MFQIGELAKRCGVSTDTLRFYEKNELIAPATRTESGYRLYDEKS
                     QQQVTFILKAKELGLSLEEIKELLEIRLEATEHSCAEVKAITSAKLAVIDQKIEELTR
                     IRSALKKINDACCGHVEDNASHCSILAALE"
     misc_feature    282779..283174
                     /gene="zntR"
                     /locus_tag="O3Y_01290"
                     /note="zinc-responsive transcriptional regulator;
                     Provisional; Region: zntR; PRK09514"
                     /db_xref="CDD:181924"
     misc_feature    282782..283162
                     /gene="zntR"
                     /locus_tag="O3Y_01290"
                     /note="Helix-Turn-Helix DNA binding domain of Heavy Metal
                     Resistance transcription regulators; Region: HTH_HMRTR;
                     cd04770"
                     /db_xref="CDD:133398"
     misc_feature    order(282785..282793,282833..282835,282884..282892)
                     /gene="zntR"
                     /locus_tag="O3Y_01290"
                     /note="DNA binding residues [nucleotide binding]"
                     /db_xref="CDD:133398"
     misc_feature    order(282926..282928,282935..282937,282947..282952,
                     282977..282979,283013..283018,283025..283027,
                     283034..283036,283046..283048,283064..283066,
                     283076..283078,283085..283090,283109..283111,
                     283124..283126,283136..283138,283151..283153,
                     283157..283159)
                     /gene="zntR"
                     /locus_tag="O3Y_01290"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:133398"
     misc_feature    order(283013..283015,283118..283120,283151..283153)
                     /gene="zntR"
                     /locus_tag="O3Y_01290"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:133398"
     gene            283404..284963
                     /locus_tag="O3Y_01295"
                     /db_xref="GeneID:11913208"
     CDS             283404..284963
                     /locus_tag="O3Y_01295"
                     /note="COG3710 DNA-binding winged-HTH domains"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator CadC"
                     /protein_id="YP_005332134.1"
                     /db_xref="GI:379740165"
                     /db_xref="GeneID:11913208"
                     /translation="MIGICFQINDWVLCIDENKLYRQDREVSAEPRLINLLHFLAEHA
                     GEVFGREELIQHVWDGAIVTDQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVA
                     NVQRLDGNPYVSRQEESTASDVCLADDIDDVEDAVPEIVFPAGPLTRAVCQSQQPKKS
                     SKPNVSRWRLNLLNAIWIGLVIVAMGFFTVQQSQVRITQVVDTHLIEFKFQDGFHAQA
                     LTHELADGIAQKLMADLTQVSDYRVILGKTAYSSGILPGKSIMVRVNDQDGHEFLDLE
                     LKNNSSDAVLFSRQYPLDSQHLASVLKSAEWDVMQALKIPNAEQQAQRLLVDFPRQPA
                     ALGLYVRANHYLNVADRPQFQKGIYLLEQVLKLEPDNHYVQAELLIAYHVQQAISPDQ
                     ALNQDRMLVLSEQLQQVSYSPQAVVQPRIYEALALQATVENQVETATHYLAQAQGLRE
                     SVLSYVLQGKHAELKGDLDGASDAYSEAFYMDTSLETYLLCENLVFHSNLKSIDYAMY
                     RSVHPSVVRLL"
     misc_feature    283404..284951
                     /locus_tag="O3Y_01295"
                     /note="DNA-binding transcriptional activator CadC;
                     Provisional; Region: PRK10153"
                     /db_xref="CDD:236658"
     misc_feature    283404..283853
                     /locus_tag="O3Y_01295"
                     /note="DNA-binding winged-HTH domains [Transcription];
                     Region: CadC; COG3710"
                     /db_xref="CDD:226233"
     misc_feature    order(283491..283493,283548..283553,283602..283604,
                     283611..283613,283635..283640,283677..283679,
                     283692..283694)
                     /locus_tag="O3Y_01295"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238225"
     gene            285663..287000
                     /gene="cadB"
                     /locus_tag="O3Y_01300"
                     /db_xref="GeneID:11913209"
     CDS             285663..287000
                     /gene="cadB"
                     /locus_tag="O3Y_01300"
                     /note="COG0531 Amino acid transporters"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine/cadaverine antiporter"
                     /protein_id="YP_005332135.1"
                     /db_xref="GI:379740166"
                     /db_xref="GeneID:11913209"
                     /translation="MSSNAKKIGLIACTGVVAGNMMGSGIALLPSTLASVGSISIYSW
                     LICIVGALSLAFVFARLATKNPQEGGPIAYAGEVSPVFGFQTGVLYYHANWIGNLAIA
                     ITGVSYLSVFFPVLNNPIPAGLATIASVWLFTLVNLLGGSWVSRLCTIGLVLILIPVV
                     GTALFGWTHFDSALYSQNWNVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPK
                     RTVPLATMLGIGLAGLIYVLSTQMISGMFPASEVAASGAPFALATTALFGSWTAPFVS
                     AFTALACFTSLGSWMMLVGEAGKRAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLL
                     MLVLMFFSSETAHASDLFNQLTTDAVLLTMLPYFYSSINLIRFEGMTTRNTFVMLFSG
                     IASLFCMVALAGAEGSTLTATFIMSLIILMFYSKKAGLDKYLETHPQQASAQF"
     misc_feature    285666..286970
                     /gene="cadB"
                     /locus_tag="O3Y_01300"
                     /note="lysine/cadaverine antiporter; Provisional; Region:
                     cadB; PRK10435"
                     /db_xref="CDD:182458"
     gene            287110..289245
                     /locus_tag="O3Y_01305"
                     /db_xref="GeneID:11913210"
     CDS             287110..289245
                     /locus_tag="O3Y_01305"
                     /note="COG1982 Arginine/lysine/ornithine decarboxylases"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase CadA"
                     /protein_id="YP_005332136.1"
                     /db_xref="GI:379740167"
                     /db_xref="GeneID:11913210"
                     /translation="MNIFAILNHMGVFFKEEPVRQLHAALEKAGYDVVYPVDDKDLIK
                     MIEMNPRICGVLFDWDKYSLELCERISKVNEKLPVHAFANEQSTLDISLTDLRLNVHF
                     FEYALGMADDIAIKINQATQEYKDAIMPPFTKALFKYVEEGKYTFCTPGHMGGTAFQK
                     SPVGSIFYDFYGPNTFKADVSISMPELGSLLDHSGPHKEAEEYIARTFNADASYIVTN
                     GTSTSNKIVGMFSAPAGSTVLVDRNCHKSLTHLMMMTDVTPIYFRPTRNAYGILGGIP
                     QNEFSREVIAEKVANTPGASAPSYAVITNSTYDGLLYNTQFIKESLDCKHIHFDSAWV
                     PYTNFNRIYEGKCGMSGEAMPGKVFYETQSTHKLLAAFSQASMIHVKGEFDRESFNEA
                     FMMHTSTSPQYGIVASTETAAAMMRGNTGRKLMQDSIDRAIRFRKEIKRLKGESEGWF
                     FDVWQPENIETTECWKLDPNQDWHGFKNLDDNHMYLDPIKITLLTPGMSKDGELEQSG
                     IPASLVSKYLDEHGIVVEKTGPYNLLFLFSIGIDKSKAMQLLRGLTEFKRGYDLNLTI
                     RTMLPSLYREDPVFYEGMRIQELAQGIHDLTRKYQLPELMYKAFDVLPEMKVTPHVAW
                     QQELRGQTEEILLNEMVGRVSANMILPYPPGVPLVLPGEMVTDSSRPVLDFLEMLCEI
                     GAHYPGFETDIHGLYRQKDGSYTVKVLKD"
     misc_feature    287110..289242
                     /locus_tag="O3Y_01305"
                     /note="lysine decarboxylase CadA; Provisional; Region:
                     PRK15400"
                     /db_xref="CDD:185298"
     misc_feature    287149..287481
                     /locus_tag="O3Y_01305"
                     /note="Orn/Lys/Arg decarboxylase, N-terminal domain;
                     Region: OKR_DC_1_N; pfam03709"
                     /db_xref="CDD:252113"
     misc_feature    287500..288432
                     /locus_tag="O3Y_01305"
                     /note="Ornithine decarboxylase family. This family belongs
                     to pyridoxal phosphate (PLP)-dependent aspartate
                     aminotransferase superfamily (fold I). The major groups in
                     this CD corresponds to ornithine decarboxylase (ODC),
                     arginine decarboxylase (ADC) and lysine...; Region:
                     Orn_deC_like; cd00615"
                     /db_xref="CDD:99739"
     misc_feature    order(287644..287646,287659..287661,287683..287685,
                     287758..287766,287770..287775,287782..287784,
                     287794..287802,287806..287811,287842..287847,
                     288205..288210,288217..288231,288280..288285,
                     288289..288297,288301..288303,288322..288324,
                     288331..288333,288340..288342,288379..288384)
                     /locus_tag="O3Y_01305"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99739"
     misc_feature    order(287764..287772,287842..287844,287848..287850,
                     288019..288021,288097..288099,288103..288108,
                     288199..288201,288205..288210)
                     /locus_tag="O3Y_01305"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99739"
     misc_feature    288208..288210
                     /locus_tag="O3Y_01305"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99739"
     misc_feature    288817..289221
                     /locus_tag="O3Y_01305"
                     /note="Orn/Lys/Arg decarboxylase, C-terminal domain;
                     Region: OKR_DC_1_C; pfam03711"
                     /db_xref="CDD:112521"
     gene            complement(289363..291003)
                     /locus_tag="O3Y_01310"
                     /db_xref="GeneID:11913211"
     CDS             complement(289363..291003)
                     /locus_tag="O3Y_01310"
                     /note="COG0840 Methyl-accepting chemotaxis protein"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="YP_005332137.1"
                     /db_xref="GI:379740168"
                     /db_xref="GeneID:11913211"
                     /translation="MTSVSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLE
                     KQVQTQHLVESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQ
                     PAMVMHPMKPDLNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVD
                     KVSYVKLFKPWGWIIGTGIYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLIGRSIT
                     QPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITE
                     SVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSA
                     NQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNL
                     LALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSM
                     TQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQ
                     IAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI"
     misc_feature    complement(290608..290892)
                     /locus_tag="O3Y_01310"
                     /note="Cache domain; Region: Cache_2; pfam08269"
                     /db_xref="CDD:254697"
     misc_feature    complement(290206..290355)
                     /locus_tag="O3Y_01310"
                     /note="Histidine kinase, Adenylyl cyclase,
                     Methyl-accepting protein, and Phosphatase (HAMP) domain.
                     HAMP is a signaling domain which occurs in a wide variety
                     of signaling proteins, many of which are bacterial. The
                     HAMP domain consists of two alpha helices...; Region:
                     HAMP; cd06225"
                     /db_xref="CDD:100122"
     misc_feature    complement(order(290212..290217,290224..290229,
                     290233..290238,290245..290250,290254..290259,
                     290311..290313,290317..290322,290329..290334,
                     290338..290343,290350..290355))
                     /locus_tag="O3Y_01310"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:100122"
     misc_feature    complement(289369..290154)
                     /locus_tag="O3Y_01310"
                     /note="Methyl-accepting chemotaxis-like domains
                     (chemotaxis sensory transducer); Region: MA; smart00283"
                     /db_xref="CDD:214599"
     misc_feature    complement(289474..290073)
                     /locus_tag="O3Y_01310"
                     /note="Methyl-accepting chemotaxis protein (MCP),
                     signaling domain; Region: MCP_signal; cd11386"
                     /db_xref="CDD:206779"
     misc_feature    complement(order(289477..289482,289489..289491,
                     289498..289503,289510..289512,289519..289524,
                     289528..289533,289540..289545,289549..289554,
                     289561..289563,289570..289575,289582..289584,
                     289591..289596,289603..289608,289612..289617,
                     289624..289626,289633..289638,289645..289647,
                     289654..289659,289696..289701,289708..289713,
                     289717..289722,289729..289734,289741..289743,
                     289750..289755,289762..289764,289771..289773,
                     289783..289785,289804..289806,289813..289815,
                     289825..289827,289834..289839,289846..289848,
                     289855..289857,289864..289869,289876..289881,
                     289888..289890,289897..289902,289906..289908,
                     289918..289923,289927..289932,289939..289941,
                     289948..289953,289960..289965,289972..289974,
                     289981..289986,289993..289995,290002..290007,
                     290011..290016,290023..290025,290032..290037,
                     290044..290049))
                     /locus_tag="O3Y_01310"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:206779"
     misc_feature    complement(289738..289839)
                     /locus_tag="O3Y_01310"
                     /note="putative CheW interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:206779"
     gene            complement(291268..291945)
                     /locus_tag="O3Y_01315"
                     /db_xref="GeneID:11913212"
     CDS             complement(291268..291945)
                     /locus_tag="O3Y_01315"
                     /note="COG3295 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332138.1"
                     /db_xref="GI:379740169"
                     /db_xref="GeneID:11913212"
                     /translation="MQRQVKGDNHRRAGLTASLIMQRRRLPLHNNKWIRRLHAWCGFF
                     TLLLMLLYGLTGLWLSHRAVWPLPGPHTSKSEWQLSLTEPIDSVSTFQAQLNTEYGEH
                     EWTIREIAAQQLPTPQQPLLIPARWEARATSVTDTFSAQYVPGTLVIQAQHQKANWAA
                     VLNRLHRGMGTGLGWQLFSDLAAVAMLLLALTSLLMWTKLHGSPKRAGWLLIGGSVAT
                     TLFAIFG"
     misc_feature    complement(291271..291936)
                     /locus_tag="O3Y_01315"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG3295"
                     /db_xref="CDD:225832"
     gene            complement(291966..292442)
                     /locus_tag="O3Y_01320"
                     /db_xref="GeneID:11913213"
     CDS             complement(291966..292442)
                     /locus_tag="O3Y_01320"
                     /note="COG1629 Outer membrane receptor proteins, mostly Fe
                     transport"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system receptor"
                     /protein_id="YP_005332139.1"
                     /db_xref="GI:379740170"
                     /db_xref="GeneID:11913213"
                     /translation="MRDPNDQERIILTGLQRTDGIELSSRALLTDEFSLRGGIGLQDA
                     KYVEADASEQGKRPTNVSRLNGELFVAYQSASDGWFGETGFVAVGDRYADRTNTTKLP
                     GYARFDARLGYQWQAWRTQLSVENLLDKDYYLSATSSTQIQPGAPREFYLTASYQF"
     misc_feature    complement(291969..>292397)
                     /locus_tag="O3Y_01320"
                     /note="Porin superfamily.  These outer membrane channels
                     share a beta-barrel structure that differ in strand and
                     shear number.  Classical (gram-negative ) porins are
                     non-specific channels for small hydrophillic molecules and
                     form 16 beta-stranded barrels (16,20)...; Region:
                     OM_channels; cl21487"
                     /db_xref="CDD:271907"
     gene            complement(292524..294008)
                     /locus_tag="O3Y_01325"
                     /db_xref="GeneID:11913214"
     CDS             complement(292524..294008)
                     /locus_tag="O3Y_01325"
                     /note="COG1629 Outer membrane receptor proteins, mostly Fe
                     transport"
                     /codon_start=1
                     /transl_table=11
                     /product="iron complex outermembrane recepter protein"
                     /protein_id="YP_005332140.1"
                     /db_xref="GI:379740171"
                     /db_xref="GeneID:11913214"
                     /translation="MSHFTRSRTWVSLAVFAACAPAYAEQETLVITSQQSQLPEVATA
                     TRTATPAKLVPQTIDSLSAEELTAFGAPSLSEALAGVPGVNANGDTRFDGINIRGFSA
                     SNDFYLDGFRDDMQYTRDLGNIERIEVLKGPAAVLYGRGSTGGIVNRVSKVPHAGDAA
                     SVSARIGSHDYQRLAADLNGEVNQQVQVRLNIAQEDYGSFRHGVEGKRTLLAPSLNWD
                     INDDVSWLIQYEQHSHNRVPDRGIPAVNGSPAEVPASSVYSDTSRDFIDDDVATTRSR
                     ITWAFHPEWQLRQQLSYTKLDSQFDNTYVARVSGDQVTRQRFQQDLQANNLISNTETE
                     GTFNTGPIAHRILIGLEQGWQERSPKLYRNANSIPSGNLYQPESLPTYNGPMSVFSDA
                     THKVRSYGIYVQDQLQWGDWIVLAGLRHDDFTVTTHRHDTNKEETISSNSLSPRLGVV
                     WTPVQEHALYASYSQTYSPVGGGVIGITPGDKHNHLDPEHSRLY"
     misc_feature    complement(<292533..293840)
                     /locus_tag="O3Y_01325"
                     /note="Porin superfamily.  These outer membrane channels
                     share a beta-barrel structure that differ in strand and
                     shear number.  Classical (gram-negative ) porins are
                     non-specific channels for small hydrophillic molecules and
                     form 16 beta-stranded barrels (16,20)...; Region:
                     OM_channels; cl21487"
                     /db_xref="CDD:271907"
     gene            complement(294230..294835)
                     /locus_tag="O3Y_01330"
                     /db_xref="GeneID:11913215"
     CDS             complement(294230..294835)
                     /locus_tag="O3Y_01330"
                     /EC_number="4.1.3.16"
                     /note="COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase"
                     /codon_start=1
                     /transl_table=11
                     /product="keto-hydroxyglutarate-aldolase/keto-deoxy-
                     phosphogluconate aldolase"
                     /protein_id="YP_005332141.1"
                     /db_xref="GI:379740172"
                     /db_xref="GeneID:11913215"
                     /translation="MTIEQRLRAIKIVPVIAINDVAHALPLAKVLVENGLPCAEVTFR
                     TAAAAESIRIMRKAYPDLLIGAGTVLTTAQVDEAIAAGADFIVSPGLNPTTVKYCQQR
                     NIAIIPGVNNPSLVEQAMEMGLRTLKFFPAEPSGGIAMLKALSAVYPVSFMPTGGINP
                     NNAQEYLALKSVVACGGTWMVPTDLMDKGDWDTLAELVRNV"
     misc_feature    complement(294239..294829)
                     /locus_tag="O3Y_01330"
                     /note="Entner-Doudoroff aldolase; Region: eda; TIGR01182"
                     /db_xref="CDD:162241"
     misc_feature    complement(294245..294817)
                     /locus_tag="O3Y_01330"
                     /note="KDPG and KHG aldolase; Region: KDPG_aldolase;
                     cd00452"
                     /db_xref="CDD:188632"
     misc_feature    complement(order(294371..294373,294446..294448,
                     294452..294454,294632..294634,294704..294706,
                     294716..294718,294791..294793))
                     /locus_tag="O3Y_01330"
                     /note="active site"
                     /db_xref="CDD:188632"
     misc_feature    complement(order(294392..294397,294407..294409,
                     294443..294448,294473..294475,294485..294487,
                     294491..294502,294560..294571,294626..294628,
                     294632..294634,294704..294706))
                     /locus_tag="O3Y_01330"
                     /note="intersubunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188632"
     misc_feature    complement(294452..294454)
                     /locus_tag="O3Y_01330"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:188632"
     gene            complement(294848..296224)
                     /locus_tag="O3Y_01335"
                     /db_xref="GeneID:11913216"
     CDS             complement(294848..296224)
                     /locus_tag="O3Y_01335"
                     /note="COG2610 H+/gluconate symporter and related
                     permeases"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate:H+ symporter, GntP family protein"
                     /protein_id="YP_005332142.1"
                     /db_xref="GI:379740173"
                     /db_xref="GeneID:11913216"
                     /translation="MDPLLQTSDPTYLLTVAAVAIIALLLLIIRFKIHAFASLTLVSL
                     GTAIATGVASDKVVSTMMTGFGGTLASVALLVGLGAMIGKILEVTGGAKVLADTLIGR
                     FGEQRAPFALGVASLLFGFPIFFDAGLIVMMPIIFSVAKRFGGSPLKYALPSAGAFAV
                     MHAFVPPHPGPVAAAELLGANIGLLLIVGLLVAIPTWYLGAYLFGLYAGKKFDIPLSK
                     AFFNTDAIIDEAKLPKFATVMTILVLPVLLIFMDTGLNTLAVAGMIDGKAPAVEFLRM
                     LGKTPIALLITLLVCIAAFAKDYGMARLEKLCGDSLAPICAVILVTGAGGMFGGVLRA
                     SGIGSALAGVLSDTGMPVVVAAFVIATCLRVAQGSATVALTTTAALIAPTVAATTGLS
                     DLDLCFIVISIAGGATVLSHFNDSGFWLVSRLMEMDEKTTLKTWTVMETLLGGIAFLI
                     VATLSFIL"
     misc_feature    complement(294851..296188)
                     /locus_tag="O3Y_01335"
                     /note="Na+-H+ antiporter family; Region: Na_H_antiport_2;
                     cl15264"
                     /db_xref="CDD:271770"
     misc_feature    complement(294851..296137)
                     /locus_tag="O3Y_01335"
                     /note="H+/gluconate symporter and related permeases
                     [Carbohydrate transport and metabolism / Amino acid
                     transport and metabolism]; Region: GntT; COG2610"
                     /db_xref="CDD:225330"
     gene            296378..296893
                     /locus_tag="O3Y_01340"
                     /db_xref="GeneID:11913217"
     CDS             296378..296893
                     /locus_tag="O3Y_01340"
                     /note="COG3265 Gluconate kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="thermoresistant gluconokinase"
                     /protein_id="YP_005332143.1"
                     /db_xref="GI:379740174"
                     /db_xref="GeneID:11913217"
                     /translation="MAGSSIIVMGVCACGKSTIGELLAKQTGRKFIDGDDLHPRANIQ
                     KMASGQPLNDEDRKPWLERIRDAAYSLESKNEHGVIVCSALKKQYRDQIREGNQNVTF
                     LFLDGSKELIMERMRARQGHFMKENMVNSQFETLERPDGEPQTLIIPIDCSVQEVVSC
                     AIQALQEQEGL"
     misc_feature    296390..296875
                     /locus_tag="O3Y_01340"
                     /note="Shikimate kinase [Amino acid transport and
                     metabolism]; Region: AroK; COG0703"
                     /db_xref="CDD:223775"
     misc_feature    296393..296830
                     /locus_tag="O3Y_01340"
                     /note="Gluconate kinase (GntK) catalyzes the phosphoryl
                     transfer from ATP to gluconate. The resulting product
                     gluconate-6-phoshate is an important precursor of
                     gluconate metabolism. GntK acts as a dimmer composed of
                     two identical subunits; Region: GntK; cd02021"
                     /db_xref="CDD:238979"
     misc_feature    order(296405..296428,296474..296476,296480..296482,
                     296720..296722,296732..296734)
                     /locus_tag="O3Y_01340"
                     /note="ATP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238979"
     misc_feature    order(296411..296416,296732..296734)
                     /locus_tag="O3Y_01340"
                     /note="Gluconate-6-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:238979"
     gene            296890..298686
                     /locus_tag="O3Y_01345"
                     /db_xref="GeneID:11913218"
     CDS             296890..298686
                     /locus_tag="O3Y_01345"
                     /EC_number="4.2.1.12"
                     /note="COG0129 Dihydroxyacid dehydratase/phosphogluconate
                     dehydratase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="YP_005332144.1"
                     /db_xref="GI:379740175"
                     /db_xref="GeneID:11913218"
                     /translation="MIHPILAKVTQNLTERSREARAAFIARSQAQEKAGKGRTSLSCG
                     NLAHAVAASCSTEKKAILDFTRSNVAIVTSYNDMLSAHQPYQHYPDRIKMVLAEYGHT
                     AQVAGGVPAMCDGVTQGQPGMDMSLFSRDLIAQATALSLSHNVFDATLLLGICDKIAP
                     GQLMGALSYAHLPTAFMPAGLMATGISNEEKVDIRQKYAAGEVGKDALLNMECQAYHA
                     PGTCTFYGTANTNQLVFEAMGLMLPGSAFVHPHSALRQALNDDATVKIASMTQGSAQY
                     RPLYQVVTEKSLLNGIVALLASGGSTNHTIHMLAVARAAGILLTWQDISDLSDVVPLL
                     AKVYPNGPADMNAFQQAGGVPALMKRLHESKLLHSDVTPVFGEFRDQLTLPELVDGEL
                     CWKACEGTRDAQVIAASGECFQTTGGTKMLNGNLGRAVIKVSAVKEEQRIIEAPAVVF
                     QCQHQVEAAYQRGELNKDCIVVVTHNGPAANGMPELHKLMPILGNVQKAGFKVALVTD
                     GRLSGASGKIPSAIHVSPEAVRGGAIGLVRDGDLLRLDCTTGTLENLTDMSHRQALAL
                     DTERDQQMWGRELFKVMRQAVSSAEQGASFIV"
     misc_feature    296893..298680
                     /locus_tag="O3Y_01345"
                     /note="phosphogluconate dehydratase; Validated; Region:
                     PRK09054"
                     /db_xref="CDD:181628"
     gene            complement(298763..299761)
                     /locus_tag="O3Y_01350"
                     /db_xref="GeneID:11913219"
     CDS             complement(298763..299761)
                     /locus_tag="O3Y_01350"
                     /note="COG1609 Transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate utilization system gnt-I
                     transcriptional repressor"
                     /protein_id="YP_005332145.1"
                     /db_xref="GI:379740176"
                     /db_xref="GeneID:11913219"
                     /translation="MTKKQRATLQDVADQVGVTKMTVSRYLRSPDSVAAATREKIALA
                     VEALGYIENRAPAMLSKSSSKAIGILLPSLSNQIFASFVQGIEAVTKANGYETLLAHF
                     GYDEEEEERKIASLLAYQVDGLILTESHHTQRTLQMIASSGVPVVETMELPANPIDMA
                     VGMDHVEASYQAVKKIIAAGKRSIAYFGARLDTRTKLRMQGYDQAMQEAGLPIKHVLT
                     GSHSSFSLAAQLLDEAFARYPDLDGVFCTNDDIAIGTLLVAQQRGIRVPEQLSVIGYN
                     ALDIGRTITPKLTSVDSPRYAIGEKSAELLIAALKGERAEQQVVDMGYRFTAGESV"
     misc_feature    complement(298766..299755)
                     /locus_tag="O3Y_01350"
                     /note="gluconate operon transcriptional regulator;
                     Provisional; Region: PRK14987"
                     /db_xref="CDD:184949"
     misc_feature    complement(299579..299734)
                     /locus_tag="O3Y_01350"
                     /note="Helix-turn-helix (HTH) DNA binding domain of the
                     LacI family of transcriptional regulators; Region:
                     HTH_LacI; cd01392"
                     /db_xref="CDD:143331"
     misc_feature    complement(order(299582..299587,299591..299596,
                     299603..299605,299612..299614,299651..299653,
                     299660..299665,299678..299680,299687..299692,
                     299696..299710,299732..299734))
                     /locus_tag="O3Y_01350"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143331"
     misc_feature    complement(299585..299614)
                     /locus_tag="O3Y_01350"
                     /note="domain linker motif; other site"
                     /db_xref="CDD:143331"
     misc_feature    complement(298769..299563)
                     /locus_tag="O3Y_01350"
                     /note="Ligand-binding domain of DNA transcription
                     repressor GntR specific for gluconate, a member of the
                     LacI-GalR family of bacterial transcription regulators;
                     Region: PBP1_GntR; cd01575"
                     /db_xref="CDD:107260"
     misc_feature    complement(order(298883..298885,298934..298936,
                     299096..299098,299168..299170,299273..299275,
                     299312..299314,299381..299383,299516..299518,
                     299525..299530))
                     /locus_tag="O3Y_01350"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:107260"
     misc_feature    complement(order(298979..298984,298991..298993,
                     299003..299005,299087..299089,299402..299410,
                     299417..299419,299426..299428,299459..299461,
                     299465..299479,299498..299503,299507..299512,
                     299519..299527))
                     /locus_tag="O3Y_01350"
                     /note="putative dimerization interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:107260"
     gene            complement(299900..300196)
                     /gene="fis"
                     /locus_tag="O3Y_01355"
                     /db_xref="GeneID:11913220"
     CDS             complement(299900..300196)
                     /gene="fis"
                     /locus_tag="O3Y_01355"
                     /note="COG2901 Factor for inversion stimulation Fis,
                     transcriptional activator"
                     /codon_start=1
                     /transl_table=11
                     /product="global DNA-binding transcriptional dual
                     regulator Fis"
                     /protein_id="YP_005332146.1"
                     /db_xref="GI:379740177"
                     /db_xref="GeneID:11913220"
                     /translation="MFEQNLTSEALTVTTVTSQDQITQKPLRDSVKASLKNYLAQLNG
                     QEVTELYELVLAEVEQPLLDTIMQYTRGNQTRAATMMGINRGTLRKKLKKYGMN"
     misc_feature    complement(299903..300187)
                     /gene="fis"
                     /locus_tag="O3Y_01355"
                     /note="global DNA-binding transcriptional dual regulator
                     Fis; Provisional; Region: fis; PRK00430"
                     /db_xref="CDD:179020"
     gene            complement(300220..301188)
                     /locus_tag="O3Y_01360"
                     /db_xref="GeneID:11913221"
     CDS             complement(300220..301188)
                     /locus_tag="O3Y_01360"
                     /note="COG0042 tRNA-dihydrouridine synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="NifR3/Smm1 family protein"
                     /protein_id="YP_005332147.1"
                     /db_xref="GI:379740178"
                     /db_xref="GeneID:11913221"
                     /translation="MKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSC
                     NPALWKTAKSQNRMVHEGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPA
                     KKVNKKLAGSALLRYPDVIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAED
                     CGIQALALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGA
                     DALMIGRPAQGRPWIFQEIQHFLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGP
                     RIARKHVSWYLQEHEQASAFRRTFNAIETADQQLDALEGYFDNVAS"
     misc_feature    complement(300226..301188)
                     /locus_tag="O3Y_01360"
                     /note="tRNA-dihydrouridine synthase B; Provisional;
                     Region: PRK10415"
                     /db_xref="CDD:182440"
     misc_feature    complement(300463..301158)
                     /locus_tag="O3Y_01360"
                     /note="Dihydrouridine synthase-like (DUS-like) FMN-binding
                     domain. Members of this family catalyze the reduction of
                     the 5,6-double bond of a uridine residue on tRNA.
                     Dihydrouridine modification of tRNA is widely observed in
                     prokaryotes and eukaryotes, and also...; Region:
                     DUS_like_FMN; cd02801"
                     /db_xref="CDD:239200"
     misc_feature    complement(order(300514..300519,300583..300585,
                     300589..300591,300682..300684,300772..300774,
                     300898..300900,300979..300981,301066..301068,
                     301138..301146))
                     /locus_tag="O3Y_01360"
                     /note="FMN binding site [chemical binding]; other site"
                     /db_xref="CDD:239200"
     misc_feature    complement(order(300514..300516,300583..300588,
                     300673..300678,300682..300687,300766..300768,
                     300772..300774,300886..300891,300979..300981))
                     /locus_tag="O3Y_01360"
                     /note="active site"
                     /db_xref="CDD:239200"
     misc_feature    complement(order(300676..300678,300682..300684,
                     300766..300768,300889..300891))
                     /locus_tag="O3Y_01360"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239200"
     misc_feature    complement(order(300583..300588,300673..300675,
                     300685..300687,300772..300774,300886..300888))
                     /locus_tag="O3Y_01360"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239200"
     gene            complement(301328..302215)
                     /gene="prmA"
                     /locus_tag="O3Y_01365"
                     /db_xref="GeneID:11913222"
     CDS             complement(301328..302215)
                     /gene="prmA"
                     /locus_tag="O3Y_01365"
                     /EC_number="2.1.1.-"
                     /note="COG2264 Ribosomal protein L11 methylase"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="YP_005332148.1"
                     /db_xref="GI:379740179"
                     /db_xref="GeneID:11913222"
                     /translation="MPWIQIKLNATNDNAEAIGDMLMEETGAVSVTFLDAKDTPVFEP
                     LPGETRLWGDTDVVALYEADMDTSLILQQIKASNMLAEGFAHKVEQVEDKDWEREWMD
                     NFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSG
                     KTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIEVYLPKD
                     QPEGLVADVVVANILAGPLRELSPIIKGLLKPGGQLAMSGILDTQAESVAEFYRDDLE
                     LDPIAEKSEWCRISGRKLG"
     misc_feature    complement(301337..302212)
                     /gene="prmA"
                     /locus_tag="O3Y_01365"
                     /note="Ribosomal protein L11 methyltransferase (PrmA);
                     Region: PrmA; pfam06325"
                     /db_xref="CDD:253677"
     misc_feature    complement(301445..301732)
                     /gene="prmA"
                     /locus_tag="O3Y_01365"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    complement(order(301523..301525,301646..301651,
                     301700..301720))
                     /gene="prmA"
                     /locus_tag="O3Y_01365"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            complement(302424..303767)
                     /locus_tag="O3Y_01370"
                     /db_xref="GeneID:11913223"
     CDS             complement(302424..303767)
                     /locus_tag="O3Y_01370"
                     /EC_number="6.4.1.2"
                     /note="COG0439 Biotin carboxylase"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="YP_005332149.1"
                     /db_xref="GI:379740180"
                     /db_xref="GeneID:11913223"
                     /translation="MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLL
                     ADESICIGPAKSIDSYLNIPRIISAAEVTGAVAIHPGYGFLSENADFAEQVERSGFIF
                     VGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDGPLDNDEAKNKAHAKRIGYPVIIKA
                     SGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADG
                     QGNAIHLAERDCSMQRRHQKVVEEAPAPGITEEMRKFIGERCTRACIEIGYRGAGTFE
                     FLYENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSFKQEDIKIRGHA
                     VECRINAEDPERFLPCPGKIERFHAPGGMGVRWESHIYSGYTVPAHYDSMIGKLITYG
                     ENRDVAIARMRNALNEMIVEGIKTNIPLQQAIMADENFQKGGTNIHYLEKKLGIK"
     misc_feature    complement(302433..303767)
                     /locus_tag="O3Y_01370"
                     /note="acetyl-CoA carboxylase biotin carboxylase subunit;
                     Validated; Region: PRK08591"
                     /db_xref="CDD:236307"
     misc_feature    complement(303441..303764)
                     /locus_tag="O3Y_01370"
                     /note="Carbamoyl-phosphate synthase L chain, N-terminal
                     domain; Region: CPSase_L_chain; pfam00289"
                     /db_xref="CDD:249744"
     misc_feature    complement(302796..303425)
                     /locus_tag="O3Y_01370"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; Region: CPSase_L_D2; pfam02786"
                     /db_xref="CDD:190425"
     misc_feature    complement(302445..302762)
                     /locus_tag="O3Y_01370"
                     /note="Biotin carboxylase C-terminal domain; Region:
                     Biotin_carb_C; smart00878"
                     /db_xref="CDD:214878"
     gene            complement(303782..304243)
                     /locus_tag="O3Y_01375"
                     /db_xref="GeneID:11913224"
     CDS             complement(303782..304243)
                     /locus_tag="O3Y_01375"
                     /EC_number="6.4.1.2"
                     /note="COG0511 Biotin carboxyl carrier protein"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit"
                     /protein_id="YP_005332150.1"
                     /db_xref="GI:379740181"
                     /db_xref="GeneID:11913224"
                     /translation="MDIRKIKKLIELVEESGIAELEISEGEESVRISRYGQPAPAPQV
                     HYAAAPAPVAAPAPVAQAAAVAEAPAAAKVPAGHKVLSPMVGTFYRSPSPDAKAFIEV
                     GQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQTVEFDQPLVVIE"
     misc_feature    complement(303785..304243)
                     /locus_tag="O3Y_01375"
                     /note="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit; Validated; Region: PRK06302"
                     /db_xref="CDD:235777"
     misc_feature    complement(303788..304006)
                     /locus_tag="O3Y_01375"
                     /note="The biotinyl-domain or biotin carboxyl carrier
                     protein (BCCP) domain is present in all biotin-dependent
                     enzymes, such as acetyl-CoA carboxylase, pyruvate
                     carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
                     carboxylase, geranyl-CoA carboxylase; Region:
                     biotinyl_domain; cd06850"
                     /db_xref="CDD:133459"
     misc_feature    complement(order(303863..303865,303884..303892,
                     303917..303919))
                     /locus_tag="O3Y_01375"
                     /note="carboxyltransferase (CT) interaction site; other
                     site"
                     /db_xref="CDD:133459"
     misc_feature    complement(303887..303889)
                     /locus_tag="O3Y_01375"
                     /note="biotinylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:133459"
     gene            complement(304300..304752)
                     /locus_tag="O3Y_01380"
                     /db_xref="GeneID:11913225"
     CDS             complement(304300..304752)
                     /locus_tag="O3Y_01380"
                     /EC_number="4.2.1.10"
                     /note="COG0757 3-dehydroquinate dehydratase II"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate dehydratase"
                     /protein_id="YP_005332151.1"
                     /db_xref="GI:379740182"
                     /db_xref="GeneID:11913225"
                     /translation="MTAKSRILVLNGPNLNLLGLREPTHYGSQTLEQIVAILRDQAQK
                     ADIELEHLQSNREYELIEAIHQAFGKVDFIIINPAAFTHTSVALRDALLGVAIPFIEV
                     HLSNVHAREPFRHHSYLSDKAQGVICGLGAQGYEFALSAAIRALQAKQ"
     misc_feature    complement(304321..304737)
                     /locus_tag="O3Y_01380"
                     /note="Dehydroquinase (DHQase), type II. Dehydroquinase
                     (or 3-dehydroquinate dehydratase) catalyzes the reversible
                     dehydration of 3-dehydroquinate to form
                     3-dehydroshikimate. This reaction is part of two metabolic
                     pathways: the biosynthetic shikimate pathway...; Region:
                     DHQase_II; cd00466"
                     /db_xref="CDD:238262"
     misc_feature    complement(order(304411..304413,304471..304473,
                     304480..304485,304492..304494,304513..304515,
                     304558..304560,304567..304569,304576..304590,
                     304705..304707,304711..304713))
                     /locus_tag="O3Y_01380"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238262"
     misc_feature    complement(order(304411..304413,304438..304446,
                     304483..304485,304504..304506,304513..304518,
                     304522..304524,304675..304677,304690..304692))
                     /locus_tag="O3Y_01380"
                     /note="active site"
                     /db_xref="CDD:238262"
     misc_feature    complement(order(304321..304323,304330..304332,
                     304342..304344,304354..304356,304363..304371,
                     304375..304386,304390..304395,304426..304431,
                     304435..304437))
                     /locus_tag="O3Y_01380"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238262"
     gene            complement(305132..307081)
                     /locus_tag="O3Y_01385"
                     /db_xref="GeneID:11913226"
     CDS             complement(305132..307081)
                     /locus_tag="O3Y_01385"
                     /EC_number="6.2.1.1"
                     /note="COG0365 Acyl-coenzyme A synthetases/AMP-(fatty)
                     acid ligases"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA synthetase"
                     /protein_id="YP_005332152.1"
                     /db_xref="GI:379740183"
                     /db_xref="GeneID:11913226"
                     /translation="MSEAHIYPVKQNIKAHTHADNDTYLAMYQQSIKDPEGFWSEHGK
                     IVDWIKPFTKVKHTSFDPGHIDIRWFEDGTLNVSANCIDRHLATRGDQVAIIWEGDDP
                     TQDKTLTYKQLHQEVCRFANALKEQGVRKGDVVCIYMPMVPEAAVAMLACTRIGAVHT
                     IVFGGFSPEALAGRIIDSNAKLVITADEGVRGGRAVPLKKNVDEALCNPEVKNISKVM
                     VLKRTGGNVAWHEHRDIWWHEATAKASDNCPPEEMKAEDPLFILYTSGSTGKPKGVLH
                     TTGGYLVYATMTFKYVFDYQPNEVFWCTADVGWITGHSYLVYGPLANGAKTILFEGVP
                     NYPTTARMSEVVDKHKVNILYTAPTAIRALMAKGDEAIKGTSRDSLRIMGSVGEPINP
                     EAWEWYYRTIGNEKSPIVDTWWQTETGGILITPLPGATALKPGSATRPFFGVQPALVD
                     NMGEIVEGATEGNLVLLDSWPGQMRTVYGDHDRFEQTYFSTFKGMYFTGDGARRDEDG
                     YYWITGRVDDVLNVSGHRMGTAEIESALVAFNKIAEAAVVGVPHDIKGQAIYAYITLN
                     DGVYPSAELHKEVKDWVRKEIGAIATPDVLHWTDALPKTRSGKIMRRILRKIATGDTS
                     NLGDTSTLADPSVVDRLIAEKAQLK"
     misc_feature    complement(305135..307066)
                     /locus_tag="O3Y_01385"
                     /note="acetyl-CoA synthetase; Provisional; Region:
                     PRK00174"
                     /db_xref="CDD:234677"
     misc_feature    complement(305180..307000)
                     /locus_tag="O3Y_01385"
                     /note="Acetyl-CoA synthetase (also known as acetate-CoA
                     ligase and acetyl-activating enzyme); Region: ACS;
                     cd05966"
                     /db_xref="CDD:213313"
     misc_feature    complement(order(305312..305317,305330..305332,
                     305504..305515,305537..305539,305546..305548,
                     305582..305584,305834..305851,305915..305926,
                     305993..305995,306002..306007,306077..306085,
                     306149..306154,306167..306169,306494..306496,
                     306500..306502,306509..306511,306587..306595))
                     /locus_tag="O3Y_01385"
                     /note="active site"
                     /db_xref="CDD:213313"
     misc_feature    complement(order(305315..305317,305330..305332,
                     305507..305515,305993..305995,306002..306007,
                     306077..306085,306149..306151,306167..306169,
                     306494..306496,306500..306502,306509..306511,
                     306587..306595))
                     /locus_tag="O3Y_01385"
                     /note="CoA binding site [chemical binding]; other site"
                     /db_xref="CDD:213313"
     misc_feature    complement(order(306266..306271,306275..306292,
                     306299..306301))
                     /locus_tag="O3Y_01385"
                     /note="acyl-activating enzyme (AAE) consensus motif; other
                     site"
                     /db_xref="CDD:213313"
     misc_feature    complement(order(305504..305506,305537..305539,
                     305546..305548,305582..305584,305834..305851,
                     305915..305926,306149..306154))
                     /locus_tag="O3Y_01385"
                     /note="AMP binding site [chemical binding]; other site"
                     /db_xref="CDD:213313"
     misc_feature    complement(order(305840..305842,305921..305926,
                     306149..306154))
                     /locus_tag="O3Y_01385"
                     /note="acetate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:213313"
     gene            complement(307284..307913)
                     /locus_tag="O3Y_01390"
                     /db_xref="GeneID:11913227"
     CDS             complement(307284..307913)
                     /locus_tag="O3Y_01390"
                     /note="COG0847 DNA polymerase III, epsilon subunit and
                     related 3'-5' exonucleases"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="YP_005332153.1"
                     /db_xref="GI:379740184"
                     /db_xref="GeneID:11913227"
                     /translation="MNWLLRRYWHAKLKGSPYQRLFETARHHEYVSLDCETTSLDPKR
                     AELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQDLHDGLSEKEALL
                     QLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYHDKLEKHLPNAY
                     FDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLTKGDLPQFIAPGV"
     misc_feature    complement(<307305..307868)
                     /locus_tag="O3Y_01390"
                     /note="DNA polymerase III, epsilon subunit and related
                     3'-5' exonucleases [DNA replication, recombination, and
                     repair]; Region: DnaQ; COG0847"
                     /db_xref="CDD:223916"
     misc_feature    complement(307335..307823)
                     /locus_tag="O3Y_01390"
                     /note="DEDDh 3'-5' exonuclease domain family; Region:
                     DEDDh; cd06127"
                     /db_xref="CDD:176648"
     misc_feature    complement(order(307359..307361,307374..307376,
                     307551..307559,307563..307568,307797..307799,
                     307803..307814))
                     /locus_tag="O3Y_01390"
                     /note="active site"
                     /db_xref="CDD:176648"
     misc_feature    complement(order(307359..307361,307374..307376,
                     307554..307559,307563..307568,307797..307799,
                     307803..307814))
                     /locus_tag="O3Y_01390"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:176648"
     misc_feature    complement(order(307359..307361,307374..307376,
                     307551..307553,307806..307808,307812..307814))
                     /locus_tag="O3Y_01390"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176648"
     gene            complement(307922..309745)
                     /locus_tag="O3Y_01395"
                     /db_xref="GeneID:11913228"
     CDS             complement(307922..309745)
                     /locus_tag="O3Y_01395"
                     /note="COG2905 Predicted signal-transduction protein
                     containing cAMP-binding and CBS domains"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332154.1"
                     /db_xref="GI:379740185"
                     /db_xref="GeneID:11913228"
                     /translation="MPDKFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHP
                     VTHLHILIKGTVEERSPDGKEVFAHYANDDLFDVRAMFEELSKHQYMALEDTLSYLLP
                     KSIFLQLYEQNGEFAAYFDNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILS
                     PEQPIHSVTQQLKERGIDAALVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPL
                     DTPVGEIATFPVLHVDEGDFLFNAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFS
                     THSHVLTLAIARAASIDELALAANKQRELVESLMSRGVRTRFVMELIAAVNEQIIEKA
                     FELVVPPALHDQCCLVVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTL
                     LQLGYPLCPGKVMVNNPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNR
                     ALLAPVKAHLQHLMAGQELILAEFTRPALNFSVPLTLFGNVKSSKQGIDIKQGGIFPI
                     VHGVRALSLEHAIDANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRLAQQLGNQ
                     HSTNQLDFKQLDRTERDLLRHSLHVVKKFKQWLGYHYQIRD"
     misc_feature    complement(307928..309745)
                     /locus_tag="O3Y_01395"
                     /note="Predicted signal-transduction protein containing
                     cAMP-binding and CBS domains [Signal transduction
                     mechanisms]; Region: COG2905"
                     /db_xref="CDD:225457"
     misc_feature    complement(309386..309715)
                     /locus_tag="O3Y_01395"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
                     cd00038"
                     /db_xref="CDD:237999"
     misc_feature    complement(order(309482..309490,309512..309517))
                     /locus_tag="O3Y_01395"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:237999"
     misc_feature    complement(order(309398..309406,309416..309424))
                     /locus_tag="O3Y_01395"
                     /note="flexible hinge region; other site"
                     /db_xref="CDD:237999"
     misc_feature    complement(308927..309286)
                     /locus_tag="O3Y_01395"
                     /note="This cd contains two tandem repeats of the
                     cystathionine beta-synthase (CBS pair) domains associated
                     with the bacterial CAP_ED (cAMP receptor protein effector
                     domain) family of transcription factors and the DUF294
                     domain.  Members of CAP_ED, include CAP...; Region:
                     CBS_pair_CAP-ED_DUF294_assoc_bac; cd04589"
                     /db_xref="CDD:239962"
     misc_feature    complement(308360..308842)
                     /locus_tag="O3Y_01395"
                     /note="Nucleotidyltransferase (NT) domain of Escherichia
                     coli adenylyltransferase (GlnE), Escherichia coli uridylyl
                     transferase (GlnD), and similar proteins; Region:
                     NT_GlnE_GlnD_like; cd05401"
                     /db_xref="CDD:143391"
     misc_feature    complement(order(308537..308539,308645..308647,
                     308651..308653))
                     /locus_tag="O3Y_01395"
                     /note="metal binding triad; metal-binding site"
                     /db_xref="CDD:143391"
     misc_feature    complement(307937..308335)
                     /locus_tag="O3Y_01395"
                     /note="Putative nucleotidyltransferase substrate binding
                     domain; Region: DUF294_C; pfam10335"
                     /db_xref="CDD:150931"
     gene            310005..311195
                     /locus_tag="O3Y_01400"
                     /db_xref="GeneID:11913229"
     CDS             310005..311195
                     /locus_tag="O3Y_01400"
                     /note="COG0477 Permeases of the major facilitator
                     superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionic acid transporter"
                     /protein_id="YP_005332155.1"
                     /db_xref="GI:379740186"
                     /db_xref="GeneID:11913229"
                     /translation="MFTPTPYGWISQYFIGFFFAYGVYLPFWSLWFEDQGVSATDIGV
                     LVGIGFATRCVANLVLTPRLHRVEQLMPALRWLSFAAMLFVGFHFFTGGSFWLMALAT
                     VLFNLCCGPVVPISDAMANYYAKLKMLDYGRTRLWGSIAFIAGSTVVGFLVAKWGSLM
                     ILYTALVGVAVSWLLSLRQITPMPVTEHEAHAVRPKLKELLTEWPVVKFLLLVALIQG
                     SHAAYYSFGSIYWKQAGHSEDIIGYLWSLGVVAEVLVFAFSKRWFAGWSLRTLFFVAS
                     LGVIARWGLTASTTTILALVAIQLLHGVTFAIAHIAAIQYIQHAPQNKMVALQALYNA
                     IPLGAVIAAVTTLSGWGYEHWGAAVFWAMAAMGGLALLIRVDTPPSTVQDGNALKAEP
                     EAQN"
     misc_feature    310044..311123
                     /locus_tag="O3Y_01400"
                     /note="The Major Facilitator Superfamily (MFS) is a large
                     and diverse group of secondary transporters that includes
                     uniporters, symporters, and antiporters. MFS proteins
                     facilitate the transport across cytoplasmic or internal
                     membranes of a variety of...; Region: MFS; cd06174"
                     /db_xref="CDD:119392"
     misc_feature    310056..311123
                     /locus_tag="O3Y_01400"
                     /note="sugar efflux transporter; Region: 2A0120;
                     TIGR00899"
                     /db_xref="CDD:129977"
     misc_feature    order(310065..310067,310074..310082,310086..310091,
                     310140..310142,310149..310154,310161..310163,
                     310173..310178,310182..310187,310329..310334,
                     310341..310346,310353..310358,310365..310367,
                     310395..310400,310407..310412,310428..310430,
                     310653..310655,310662..310667,310674..310679,
                     310686..310688,310725..310727,310737..310739,
                     310749..310751,310758..310760,310770..310772,
                     310911..310913,310920..310925,310932..310934,
                     310944..310949,310956..310958,310986..310991,
                     310998..311003,311013..311018,311025..311027)
                     /locus_tag="O3Y_01400"
                     /note="putative substrate translocation pore; other site"
                     /db_xref="CDD:119392"
     gene            311288..314731
                     /locus_tag="O3Y_01405"
                     /db_xref="GeneID:11913230"
     CDS             311288..314731
                     /locus_tag="O3Y_01405"
                     /note="COG0591 Na+/proline symporter"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="YP_005332156.1"
                     /db_xref="GI:379740187"
                     /db_xref="GeneID:11913230"
                     /translation="MQGWLVIPVSLAYLGVLFLIAWYGDRQTRWLANWRPWIYSLSIA
                     VYCTSWTFYGTVGQASVNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADF
                     IAARYGKSQGLAVAVTVIAVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSW
                     FVVLALALFTMLFGTRHIDNTEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG
                     LELSTIAASTYQAPNWPTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFP
                     VYLLLMSLFVLPIAWTGQGLLPNTSPDTFVISLPVFAGAHDIALLAFLGGTSAASGMV
                     IVSTIALAIMVSNDLVMPLLLRRMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYL
                     VLDSIPSLSAIGFLSFSAITQFAPAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSA
                     TDMLAGDASNNVLLWVITPPDWLVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLS
                     ERLQAAAFVGTPLPENENMSLYQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRET
                     LLPNQQASSALIRHTERVLAGVFGASSAKLVLTSALQGRKMQLEEVATIVDEASELYD
                     FSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNA
                     QQGLCGPGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDI
                     TVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVTATQRSERESQSKSRFLAAVSH
                     DLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESALGAAEDLISDLLDISRLESGKID
                     LHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSLLWVHSDPKLLRRVIQNFLTNAF
                     RYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQQEIFEEFNRGGQVRSDQGLGLG
                     LAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQPMPSSLTQTVAMVNEKGSELQHL
                     RVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKALEGQWIPDVILSDYRLDNGR
                     TGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFRFMAKPIKPLKLRALLNSL
                     S"
     misc_feature    311300..312787
                     /locus_tag="O3Y_01405"
                     /note="Solute carrier 5 family, sodium/glucose
                     transporters and related proteins; solute-binding domain;
                     Region: SLC5sbd; cd10322"
                     /db_xref="CDD:271357"
     misc_feature    order(311417..311419,311426..311428,312272..312274,
                     312281..312286)
                     /locus_tag="O3Y_01405"
                     /note="Na binding site [ion binding]; other site"
                     /db_xref="CDD:271357"
     misc_feature    313187..313531
                     /locus_tag="O3Y_01405"
                     /note="PAS fold; Region: PAS_7; pfam12860"
                     /db_xref="CDD:257355"
     misc_feature    313196..313507
                     /locus_tag="O3Y_01405"
                     /note="PAS domain; PAS motifs appear in archaea,
                     eubacteria and eukarya. Probably the most surprising
                     identification of a PAS domain was that in EAG-like
                     K+-channels. PAS domains have been found to bind ligands,
                     and to act as sensors for light and oxygen in...; Region:
                     PAS; cd00130"
                     /db_xref="CDD:238075"
     misc_feature    order(313244..313246,313256..313258,313274..313276,
                     313316..313324,313352..313354,313439..313441)
                     /locus_tag="O3Y_01405"
                     /note="putative active site [active]"
                     /db_xref="CDD:238075"
     misc_feature    order(313307..313309,313319..313321,313370..313372,
                     313382..313387)
                     /locus_tag="O3Y_01405"
                     /note="heme pocket [chemical binding]; other site"
                     /db_xref="CDD:238075"
     misc_feature    <313559..314317
                     /locus_tag="O3Y_01405"
                     /note="Signal transduction histidine kinase [Signal
                     transduction mechanisms]; Region: BaeS; COG0642"
                     /db_xref="CDD:223715"
     misc_feature    313643..313834
                     /locus_tag="O3Y_01405"
                     /note="Histidine Kinase A (dimerization/phosphoacceptor)
                     domain; Histidine Kinase A dimers are formed through
                     parallel association of 2 domains creating 4-helix
                     bundles; usually these domains contain a conserved His
                     residue and are activated via...; Region: HisKA; cd00082"
                     /db_xref="CDD:119399"
     misc_feature    order(313661..313663,313673..313675,313685..313687,
                     313694..313696,313706..313708,313715..313717,
                     313763..313765,313775..313777,313784..313786,
                     313796..313798,313805..313807,313817..313819)
                     /locus_tag="O3Y_01405"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119399"
     misc_feature    313679..313681
                     /locus_tag="O3Y_01405"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:119399"
     misc_feature    313991..314296
                     /locus_tag="O3Y_01405"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    order(314009..314011,314021..314023,314030..314032,
                     314099..314101,314105..314107,314111..314113,
                     314117..314122,314195..314206,314252..314254,
                     314258..314260,314273..314278,314282..314284)
                     /locus_tag="O3Y_01405"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    314021..314023
                     /locus_tag="O3Y_01405"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    order(314111..314113,314117..314119,314195..314197,
                     314201..314203)
                     /locus_tag="O3Y_01405"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     misc_feature    314384..314725
                     /locus_tag="O3Y_01405"
                     /note="Signal receiver domain; originally thought to be
                     unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
                     recently identified in eukaroytes ETR1 Arabidopsis
                     thaliana; this domain receives the signal from the sensor
                     partner in a two-component systems; Region: REC; cd00156"
                     /db_xref="CDD:238088"
     misc_feature    order(314393..314398,314528..314530,314555..314557,
                     314618..314620,314672..314674,314681..314686)
                     /locus_tag="O3Y_01405"
                     /note="active site"
                     /db_xref="CDD:238088"
     misc_feature    314528..314530
                     /locus_tag="O3Y_01405"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238088"
     misc_feature    order(314537..314542,314549..314557)
                     /locus_tag="O3Y_01405"
                     /note="intermolecular recognition site; other site"
                     /db_xref="CDD:238088"
     misc_feature    314681..314689
                     /locus_tag="O3Y_01405"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238088"
     gene            complement(314854..316347)
                     /locus_tag="O3Y_01410"
                     /db_xref="GeneID:11913231"
     CDS             complement(314854..316347)
                     /locus_tag="O3Y_01410"
                     /EC_number="3.6.1.40"
                     /note="COG0248 Exopolyphosphatase"
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine pentaphosphate phosphohydrolase"
                     /protein_id="YP_005332157.1"
                     /db_xref="GI:379740188"
                     /db_xref="GeneID:11913231"
                     /translation="MSQAVSSPLYAAIDLGSNSFHMLVVRHIDGSVQTMAKIKRKVRL
                     AAGLDEHNALSLDAMQRGWDCLSLFAERLQDIPAENIRIVGTATLRTATNAGEFIAKA
                     NQILGHPIDVISGEEEAATIYKGVAHTSGGLGRRLVVDIGGASTELIIGEGFEAKALT
                     SLKMGCVTWLERHFKDRQLTATNFNNAILAAKQMLDPILTQYTELGWNVCVGASGTVQ
                     ALQEIMLAQGMDEVITLTKLKRLQKQAMLADHLEELDIEGLTLERALVFPSGLSILIA
                     IFESLNIEAMTLAGGALREGLVYEMVQDLRQEDIRARTIRCVQTRYQIDSAYGDQVAT
                     LASKLLAQCGGEAWINEPQAEMLLRTAAKLHEIGLTIDFKKGGEHSAYLLQHLDLPGY
                     TRAQKHYLGEIVRRYREQLTSLPEQYALSGTSGKRVLRLLRLAVLLSHRRSPALEPMV
                     ELSAQEDKLTLTLDGEWLAKNPLTRTELELEANRQTDIGWPLSIECH"
     misc_feature    complement(314857..316341)
                     /locus_tag="O3Y_01410"
                     /note="guanosine pentaphosphate phosphohydrolase;
                     Provisional; Region: PRK11031"
                     /db_xref="CDD:236826"
     misc_feature    complement(315442..316323)
                     /locus_tag="O3Y_01410"
                     /note="exopolyphosphatase; Region: exo_poly_only;
                     TIGR03706"
                     /db_xref="CDD:234320"
     gene            complement(316355..317671)
                     /locus_tag="O3Y_01415"
                     /db_xref="GeneID:11913232"
     CDS             complement(316355..317671)
                     /locus_tag="O3Y_01415"
                     /note="COG0513 Superfamily II DNA and RNA helicases"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="YP_005332158.1"
                     /db_xref="GI:379740189"
                     /db_xref="GeneID:11913232"
                     /translation="MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLL
                     SGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFN
                     DAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQ
                     AVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEH
                     VVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHL
                     AADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLP
                     DDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSALLTD
                     LPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPKKEA"
     misc_feature    complement(316385..317668)
                     /locus_tag="O3Y_01415"
                     /note="ATP-dependent RNA helicase RhlB; Provisional;
                     Region: PRK04837"
                     /db_xref="CDD:235314"
     misc_feature    complement(317015..317641)
                     /locus_tag="O3Y_01415"
                     /note="DEAD-box helicases. A diverse family of proteins
                     involved in ATP-dependent RNA unwinding, needed in a
                     variety of cellular processes including splicing, ribosome
                     biogenesis and RNA degradation. The name derives from the
                     sequence of the Walker  B motif; Region: DEADc; cd00268"
                     /db_xref="CDD:238167"
     misc_feature    complement(317492..317506)
                     /locus_tag="O3Y_01415"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238167"
     misc_feature    complement(317168..317179)
                     /locus_tag="O3Y_01415"
                     /note="Mg++ binding site [ion binding]; other site"
                     /db_xref="CDD:238167"
     misc_feature    complement(317072..317080)
                     /locus_tag="O3Y_01415"
                     /note="motif III; other site"
                     /db_xref="CDD:238167"
     misc_feature    complement(316595..316975)
                     /locus_tag="O3Y_01415"
                     /note="Helicase superfamily c-terminal domain; associated
                     with DEXDc-, DEAD-, and DEAH-box proteins, yeast
                     initiation factor 4A, Ski2p, and Hepatitis C virus NS3
                     helicases; this domain is found in a wide variety of
                     helicases and helicase related proteins; may...; Region:
                     HELICc; cd00079"
                     /db_xref="CDD:238034"
     misc_feature    complement(order(316727..316735,316808..316813,
                     316871..316882))
                     /locus_tag="O3Y_01415"
                     /note="nucleotide binding region [chemical binding]; other
                     site"
                     /db_xref="CDD:238034"
     misc_feature    complement(order(316625..316627,316634..316636,
                     316646..316648,316709..316711))
                     /locus_tag="O3Y_01415"
                     /note="ATP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238034"
     gene            317783..318109
                     /locus_tag="O3Y_01420"
                     /db_xref="GeneID:11913233"
     CDS             317783..318109
                     /locus_tag="O3Y_01420"
                     /note="COG0526 Thiol-disulfide isomerase and thioredoxins"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="YP_005332159.1"
                     /db_xref="GI:379740190"
                     /db_xref="GeneID:11913233"
                     /translation="MSDKILQLTDDGFENDVIKAAGPVLVDFWAEWCGPCKMIAPILD
                     EVADEYAGKLTIGKLNIDHNAGTPPKFGIRGIPTLLLFKDGSVVATKVGALSKTQLKE
                     FLDANL"
     misc_feature    317825..318097
                     /locus_tag="O3Y_01420"
                     /note="TRX family; composed of two groups: Group I, which
                     includes proteins that exclusively encode a TRX domain;
                     and Group II, which are composed of fusion proteins of TRX
                     and additional domains. Group I TRX is a small ancient
                     protein that alter the redox...; Region: TRX_family;
                     cd02947"
                     /db_xref="CDD:239245"
     misc_feature    order(317879..317881,317888..317890)
                     /locus_tag="O3Y_01420"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239245"
     gene            318307..319566
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /db_xref="GeneID:11913234"
     CDS             318307..319566
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="COG1158 Transcription termination factor"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="YP_005332160.1"
                     /db_xref="GI:379740191"
                     /db_xref="GeneID:11913234"
                     /translation="MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAK
                     SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR
                     PPKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITAR
                     VLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTE
                     MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEE
                     FKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGE
                     TDAMEFLIDKLAMTKTNDEFFDAMRRQ"
     misc_feature    318307..319560
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="transcription termination factor Rho; Provisional;
                     Region: rho; PRK09376"
                     /db_xref="CDD:236490"
     misc_feature    318319..318447
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="Rho termination factor, N-terminal domain; Region:
                     Rho_N; smart00959"
                     /db_xref="CDD:198027"
     misc_feature    318457..318660
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
                     protein is a transcription termination factor in most
                     bacteria. In bacteria, there are two distinct mechanisms
                     for mRNA transcription termination. In intrinsic
                     termination, RNA polymerase and nascent mRNA...; Region:
                     Rho_CSD; cd04459"
                     /db_xref="CDD:239906"
     misc_feature    order(318472..318474,318478..318480,318490..318492,
                     318496..318498,318502..318504,318538..318540,
                     318544..318546,318619..318621,318628..318636)
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:239906"
     misc_feature    318772..319518
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="Transcription termination factor rho is a bacterial
                     ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
                     monomer consists of an N-terminal domain of the OB fold,
                     which is responsible for binding to cysteine rich
                     nucleotides. This alignment is of the...; Region:
                     rho_factor; cd01128"
                     /db_xref="CDD:238548"
     misc_feature    order(318823..318825,319156..319158,319189..319191,
                     319198..319203,319210..319212,319219..319221,
                     319228..319230,319303..319308,319312..319326,
                     319330..319332,319402..319407,319447..319449,
                     319459..319461)
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="multimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238548"
     misc_feature    318838..318861
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:238548"
     misc_feature    order(318847..318849,318853..318864,319369..319371)
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238548"
     misc_feature    319087..319101
                     /gene="rho"
                     /locus_tag="O3Y_01425"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:238548"
     gene            319665..320657
                     /locus_tag="O3Y_01430"
                     /db_xref="GeneID:11913235"
     CDS             319665..320657
                     /locus_tag="O3Y_01430"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332161.1"
                     /db_xref="GI:379740192"
                     /db_xref="GeneID:11913235"
                     /translation="MQQGWLCLVLLFLLGLPPYALGGDITATERELWLAEPQTQQKAE
                     ELYLLALHNEVDRLQFNLQRISYPAQEVVRFLLLQKFEQGQLILTEELAVFIAAQKSQ
                     TPNYLIAERGDGYEFSVPAFDYAAIAHRLLKQAQQQQDIMMFVLQAENGELNLREWIS
                     GSSAQSVDVRQRLLLTELHRLSPQAMERLIAQITTEQVTSWLPSATVMVQFARRSQSH
                     ALYQRLWLMKANDEIRQEVARLGAQADGFAKQQLMLAVENPSLKQEALQALIEIRPMS
                     MEVEQFLIEKLGQSENASQVASMLAQSGYQGWLHELVSSNRAVKQQAILAVLNP"
     gene            320739..322580
                     /locus_tag="O3Y_01435"
                     /db_xref="GeneID:11913236"
     CDS             320739..322580
                     /locus_tag="O3Y_01435"
                     /note="COG0043 3-polyprenyl-4-hydroxybenzoate
                     decarboxylase and related decarboxylases"
                     /codon_start=1
                     /transl_table=11
                     /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase"
                     /protein_id="YP_005332162.1"
                     /db_xref="GI:379740193"
                     /db_xref="GeneID:11913236"
                     /translation="MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKG
                     PALLFENPLGYDFPVLTNLFGTPERVAMGMGRQQVQELRDVGQWLAYLKEPEPPRGLK
                     ELIEKLPVFKQVLNMPVKRLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGL
                     TITRGPHKKRQNLGIYRQQKIARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAF
                     GADPATILGAVTPVPDTLSEYAFAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDP
                     NEFADEGPYGDHTGYYNEVERHHVFTVTHVTMRNKPIYHSTYTGRPPDEPAVLGVALN
                     EVFVPILQKQFPEIADFYLPPEGCSYRMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYT
                     KFVIVCDEQVNARDWPQVIAAMVNHMSPLRDTLFIEHTPIDSLDFASPVVGLGSKIGL
                     DATAKWPAELAVSNSDQSDKTTELSLEALKACLSDEADVLDVALPEAANDKLVLLLIN
                     KQEAGQAQQLLQRVVDKLNGDSPLKFVILCDDDVNIHDWNDVIWAMTTRMDPARDSLR
                     IVGQDLICFDATNKLPDEVEREWGTPIRKDPKLVAKIDSLWDELGIV"
     misc_feature    320739..322115
                     /locus_tag="O3Y_01435"
                     /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
                     Region: UbiD; cl00311"
                     /db_xref="CDD:260344"
     gene            322577..322846
                     /locus_tag="O3Y_01440"
                     /db_xref="GeneID:11913237"
     CDS             322577..322846
                     /locus_tag="O3Y_01440"
                     /note="COG0633 Ferredoxin"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="YP_005332163.1"
                     /db_xref="GI:379740194"
                     /db_xref="GeneID:11913237"
                     /translation="MTYTVRIVPNDRQFIIHSGETVLDAALNQQIAFPHRCRIGACAA
                     CLCKLVEGEVEYELEPLLTEQEKATGWIFACQACAITDLVLTFEE"
     misc_feature    322586..322834
                     /locus_tag="O3Y_01440"
                     /note="2Fe-2S iron-sulfur cluster binding domain.
                     Iron-sulfur proteins play an important role in electron
                     transfer processes and in various enzymatic reactions. The
                     family includes plant and algal ferredoxins, which act as
                     electron carriers in photosynthesis...; Region: fer2;
                     cd00207"
                     /db_xref="CDD:238126"
     misc_feature    order(322673..322678,322685..322687,322694..322696,
                     322700..322711,322796..322801)
                     /locus_tag="O3Y_01440"
                     /note="catalytic loop [active]"
                     /db_xref="CDD:238126"
     misc_feature    order(322685..322687,322700..322702,322709..322711,
                     322799..322801)
                     /locus_tag="O3Y_01440"
                     /note="iron binding site [ion binding]; other site"
                     /db_xref="CDD:238126"
     gene            322862..323572
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /db_xref="GeneID:11913238"
     CDS             322862..323572
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /note="COG0543 2-polyprenylphenol hydroxylase and related
                     flavodoxin oxidoreductases"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN reductase"
                     /protein_id="YP_005332164.1"
                     /db_xref="GI:379740195"
                     /db_xref="GeneID:11913238"
                     /translation="MIIQCQVKSVQPLATHTYQILLQPEHAVAYQAGQYLMVVMGEKD
                     KRPFSLASSPCRSNGELELHIGAADHSAFAHQVVEKFQQAHLNQTWVEVDVPHGNAAL
                     QESERPLLLIAGGTGFSYVRSILDHCLSQGKTQPIYLYWGARDAAQLYALNELQELAK
                     QHAHLQVVPVVEQAQDDWAGKVGNVLQAINNDFASLEAFDIYIAGRFEMAGAAREQFT
                     QNKQARRDRMFADAYAFI"
     misc_feature    322862..323569
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /note="FMN reductase; Validated; Region: fre; PRK08051"
                     /db_xref="CDD:236142"
     misc_feature    322874..323560
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /note="NAD(P)H dependent flavin oxidoreductases use flavin
                     as a substrate in mediating electron transfer from iron
                     complexes or iron proteins. Structurally similar to
                     ferredoxin reductases, but with only 15% sequence
                     identity, flavin reductases reduce FAD, FMN; Region:
                     flavin_oxioreductase; cd06189"
                     /db_xref="CDD:99786"
     misc_feature    order(322964..322966,322997..323008,323051..323059,
                     323063..323065,323075..323083,323207..323209,
                     323216..323218,323552..323554,323558..323560)
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /note="FAD binding pocket [chemical binding]; other site"
                     /db_xref="CDD:99786"
     misc_feature    order(322997..322999,323003..323008)
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /note="FAD binding motif [chemical binding]; other site"
                     /db_xref="CDD:99786"
     misc_feature    order(323072..323074,323081..323083,323090..323092,
                     323111..323113,323147..323149,323153..323155)
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /note="phosphate binding motif [ion binding]; other site"
                     /db_xref="CDD:99786"
     misc_feature    order(323192..323194,323204..323215,323219..323221)
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /note="beta-alpha-beta structure motif; other site"
                     /db_xref="CDD:99786"
     misc_feature    order(323207..323212,323285..323293,323474..323479)
                     /gene="fre"
                     /locus_tag="O3Y_01445"
                     /note="NAD binding pocket [chemical binding]; other site"
                     /db_xref="CDD:99786"
     gene            324152..325695
                     /locus_tag="O3Y_r13487"
                     /db_xref="GeneID:11913239"
     rRNA            324152..325695
                     /locus_tag="O3Y_r13487"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:11913239"
     gene            325756..325832
                     /locus_tag="O3Y_t13297"
                     /db_xref="GeneID:11913240"
     tRNA            325756..325832
                     /locus_tag="O3Y_t13297"
                     /product="tRNA-Ile"
                     /db_xref="GeneID:11913240"
     gene            325841..325916
                     /locus_tag="O3Y_t13299"
                     /db_xref="GeneID:11913241"
     tRNA            325841..325916
                     /locus_tag="O3Y_t13299"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:11913241"
     gene            326202..329099
                     /locus_tag="O3Y_r13503"
                     /db_xref="GeneID:11913242"
     rRNA            326202..329099
                     /locus_tag="O3Y_r13503"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:11913242"
     gene            329220..329335
                     /locus_tag="O3Y_r13469"
                     /db_xref="GeneID:11913243"
     rRNA            329220..329335
                     /locus_tag="O3Y_r13469"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:11913243"
     gene            329361..329437
                     /locus_tag="O3Y_t13301"
                     /db_xref="GeneID:11913244"
     tRNA            329361..329437
                     /locus_tag="O3Y_t13301"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:11913244"
     gene            complement(329722..331062)
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /db_xref="GeneID:11913245"
     CDS             complement(329722..331062)
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /EC_number="2.7.8.8"
                     /note="COG1502
                     Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi
                     n synthases and related enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine synthase"
                     /protein_id="YP_005332165.1"
                     /db_xref="GI:379740196"
                     /db_xref="GeneID:11913245"
                     /translation="MIARRNPIEQLPAIAQDPDKFGVLLSAAEFRTHLVESIRQARKR
                     IYLVALYLENDDAGREILTELYAAKQRNPGLEIHICVDWHRAQRGLIGAAESEGNAAM
                     YRDFAQQHEHCIPVYGIPVRGREVFGVLHLKGFIIDDQVIYSGASLNNVYLQFHGRYR
                     FDRYHTLENAELADSMVHFIQQEMLAHPAVNNLACGSKPTTKEIKSDIRQFRASLAQA
                     NYQFAKQKVNEGQVAVTPLVGLGRRRNRLNQSIIQLLASAKDEVFICTPYFNFPPSIA
                     KEVKKALRRGVKVHIVIGDKTANDFYIAPEEPFKTIGGLPYLYELNLRRFAKANEAHI
                     ASRKLSIHLWKHENHSFHLKGIWVDKRYMLITGNNLNPRAWKLDLENAILIRDDYHHL
                     TTKFEAEIDNILQHTQLICTYKQIEKPEHYPEKVQRLVRRIMRLKADRVLKQIL"
     misc_feature    complement(329725..331050)
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="phosphatidylserine synthase; Provisional; Region:
                     pssA; PRK09428"
                     /db_xref="CDD:236510"
     misc_feature    complement(330514..331032)
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="Catalytic domain, repeat 1, of phosphatidylserine
                     synthases from gram-negative bacteria; Region:
                     PLDc_PSS_G_neg_1; cd09134"
                     /db_xref="CDD:197232"
     misc_feature    complement(order(330514..330516,330526..330528,
                     330535..330540,330550..330552,330562..330564,
                     330568..330570,330574..330588,330628..330630,
                     330634..330636,330664..330684,330694..330708,
                     330994..330996,331000..331002))
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="domain interface [polypeptide binding]; other site"
                     /db_xref="CDD:197232"
     misc_feature    complement(order(330577..330579,330622..330624,
                     330628..330630,330664..330666,330670..330672))
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="putative active site [active]"
                     /db_xref="CDD:197232"
     misc_feature    complement(330670..330672)
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197232"
     misc_feature    complement(329725..330369)
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="Catalytic domain, repeat 2, of phosphatidylserine
                     synthases from gram-negative bacteria; Region:
                     PLDc_PSS_G_neg_2; cd09136"
                     /db_xref="CDD:197234"
     misc_feature    complement(order(329854..329859,329866..329868,
                     329878..329880,329887..329889,329905..329907,
                     329911..329934,329944..329946,329962..329973,
                     330004..330018,330343..330345,330349..330369))
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="domain interface [polypeptide binding]; other site"
                     /db_xref="CDD:197234"
     misc_feature    complement(order(329923..329925,329956..329958,
                     329962..329964,330001..330003,330007..330009))
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="putative active site [active]"
                     /db_xref="CDD:197234"
     misc_feature    complement(330007..330009)
                     /gene="pssA"
                     /locus_tag="O3Y_01450"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197234"
     gene            complement(331157..331579)
                     /locus_tag="O3Y_01455"
                     /db_xref="GeneID:11913246"
     CDS             complement(331157..331579)
                     /locus_tag="O3Y_01455"
                     /note="COG0454 Histone acetyltransferase HPA2 and related
                     acetyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332166.1"
                     /db_xref="GI:379740197"
                     /db_xref="GeneID:11913246"
                     /translation="MLEFQQFAPIKLPLIKRFYKNHYPGSKPKSDEQVIVALKDREIV
                     GVVRFRMIGQYRLLTGMAVEAQSRQQGIGKQLLDYCQKQWLNPATFCFAYTHLEHFYQ
                     QGHFIQIAPHALPAELHLLFERYSRSGKDLIPMQYQAK"
     misc_feature    complement(331331..331480)
                     /locus_tag="O3Y_01455"
                     /note="N-Acyltransferase superfamily: Various enzymes that
                     characteristically catalyze the transfer of an acyl group
                     to a substrate; Region: NAT_SF; cd04301"
                     /db_xref="CDD:173926"
     misc_feature    complement(order(331358..331363,331391..331399))
                     /locus_tag="O3Y_01455"
                     /note="Coenzyme A binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:173926"
     misc_feature    complement(331247..>331393)
                     /locus_tag="O3Y_01455"
                     /note="N-Acyltransferase superfamily: Various enzymes that
                     characteristically catalyze the transfer of an acyl group
                     to a substrate; Region: NAT_SF; cl17182"
                     /db_xref="CDD:271799"
     gene            331616..332689
                     /gene="murB"
                     /locus_tag="O3Y_01460"
                     /db_xref="GeneID:11913247"
     CDS             331616..332689
                     /gene="murB"
                     /locus_tag="O3Y_01460"
                     /EC_number="1.1.1.158"
                     /note="COG0812 UDP-N-acetylmuramate dehydrogenase"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylenolpyruvoylglucosamine reductase"
                     /protein_id="YP_005332167.1"
                     /db_xref="GI:379740198"
                     /db_xref="GeneID:11913247"
                     /translation="MASLSYPKTTMQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLK
                     ALYCSAEWASLPKLIIGKGSNMLFTCHYTGMIVVNRLNGIEHQQDDDYHRLHVAGGED
                     WPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNIGAYGVEFKDVCDYVEYLCLETGTV
                     KRLTMEECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHD
                     VYQRVCATRMEKLPDPAVMGNAGSFFKNPVISQQAFARLQIEHPDVVAYPAEQGVKVA
                     AGWLIDQAGLKGHQIGGAKVHPKQALVIVNTGDASAQDVLMLAADIQQRVFNCYGIEL
                     EHEVRFIGESEETNLKQWMSEQA"
     misc_feature    331646..332638
                     /gene="murB"
                     /locus_tag="O3Y_01460"
                     /note="UDP-N-acetylenolpyruvoylglucosamine reductase;
                     Provisional; Region: murB; PRK00046"
                     /db_xref="CDD:234593"
     misc_feature    331706..332107
                     /gene="murB"
                     /locus_tag="O3Y_01460"
                     /note="FAD binding domain; Region: FAD_binding_4;
                     pfam01565"
                     /db_xref="CDD:250709"
     misc_feature    332270..332641
                     /gene="murB"
                     /locus_tag="O3Y_01460"
                     /note="UDP-N-acetylenolpyruvoylglucosamine reductase,
                     C-terminal domain; Region: MurB_C; pfam02873"
                     /db_xref="CDD:251582"
     gene            332686..333648
                     /locus_tag="O3Y_01465"
                     /db_xref="GeneID:11913248"
     CDS             332686..333648
                     /locus_tag="O3Y_01465"
                     /EC_number="6.3.4.15"
                     /note="COG1654 Biotin operon repressor"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     synthetase/biotin operon repressor"
                     /protein_id="YP_005332168.1"
                     /db_xref="GI:379740199"
                     /db_xref="GeneID:11913248"
                     /translation="MKEHSAKLAILKQLADGDFHSGEVLGAQLGISRAAISKHIQGIR
                     DWGVDVFRVQGKGYQLAQAMTLLDQSVIQSQVNNPVELHPIIGSTNQYLLDHVETLVS
                     GTVCLAEYQASGRGRRGRHWVSPFGANLYLSIYWRLDAGMAAAMGLSLVVGVAIVEAL
                     EAMGVDGVKLKWPNDLYYQDKKLAGILVEMSGQAGAAAHLVIGMGINLAMRDNEGNID
                     QPWISLAEVTGQSRIDRNALAINLIAALDRTLRQYEISGMQNFVERWNRWDNFIGRPV
                     KLLMGANEVRGIERGIDEHGGVLLETEEGLKSFIGGEISLRKND"
     misc_feature    332689..333645
                     /locus_tag="O3Y_01465"
                     /note="bifunctional biotin--[acetyl-CoA-carboxylase]
                     synthetase/biotin operon repressor; Provisional; Region:
                     PRK11886"
                     /db_xref="CDD:237010"
     misc_feature    332695..332889
                     /locus_tag="O3Y_01465"
                     /note="Arsenical Resistance Operon Repressor and similar
                     prokaryotic, metal regulated homodimeric repressors. ARSR
                     subfamily of helix-turn-helix bacterial transcription
                     regulatory proteins (winged helix topology). Includes
                     several proteins that appear to...; Region: HTH_ARSR;
                     cd00090"
                     /db_xref="CDD:238042"
     misc_feature    order(332698..332700,332707..332712,332719..332724,
                     332731..332733,332824..332826,332878..332883,
                     332887..332889)
                     /locus_tag="O3Y_01465"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238042"
     misc_feature    order(332698..332706,332743..332751,332779..332790,
                     332794..332799,332806..332811,332815..332820,
                     332836..332844,332857..332859)
                     /locus_tag="O3Y_01465"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238042"
     misc_feature    order(332743..332745,332752..332754,332878..332880)
                     /locus_tag="O3Y_01465"
                     /note="putative Zn2+ binding site [ion binding]; other
                     site"
                     /db_xref="CDD:238042"
     misc_feature    332938..333306
                     /locus_tag="O3Y_01465"
                     /note="Biotin/lipoate A/B protein ligase family; Region:
                     BPL_LplA_LipB; pfam03099"
                     /db_xref="CDD:251729"
     misc_feature    333496..333636
                     /locus_tag="O3Y_01465"
                     /note="Biotin protein ligase C terminal domain; Region:
                     BPL_C; pfam02237"
                     /db_xref="CDD:251174"
     gene            complement(333698..334621)
                     /locus_tag="O3Y_01470"
                     /db_xref="GeneID:11913249"
     CDS             complement(333698..334621)
                     /locus_tag="O3Y_01470"
                     /EC_number="2.7.1.33"
                     /note="COG1072 Panthothenate kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="pantothenate kinase"
                     /protein_id="YP_005332169.1"
                     /db_xref="GI:379740200"
                     /db_xref="GeneID:11913249"
                     /translation="MSPYLTFDRQHWAQLRNSVPMTLSESDLKELQGINDHLSMTEAV
                     EIYLPLARLLNLYVAARQSRNGVLHQFLGNTESAPPFVIGIAGSVAVGKSTTARLLKA
                     LLSRWENHPKVELITTDGFLYPNKVLTERGIMHKKGFPESYDIRRLVEFVSEVKAGQP
                     NVTAPVYSHLTYDITDEMKVVDRPDVLIIEGLNVLQSGMDYPHDPHRVFISDFLDFSI
                     YVDADSQLIEKWYIERFMKFRQGAFKKPGSYFSHYTALTEAQAEQKARSIWETINGKN
                     LVENILPTKGRAHLILRKGLNHTVEEVLLRK"
     misc_feature    complement(333707..334378)
                     /locus_tag="O3Y_01470"
                     /note="Pantothenate kinase (PanK) catalyzes the
                     phosphorylation of pantothenic acid to form
                     4'-phosphopantothenic, which is the first of five steps in
                     coenzyme A (CoA) biosynthetic pathway. The reaction
                     carried out by this enzyme is a key regulatory point...;
                     Region: PanK; cd02025"
                     /db_xref="CDD:238983"
     misc_feature    complement(order(333728..333730,333740..333742,
                     333920..333922,333932..333934,334334..334345,
                     334352..334354))
                     /locus_tag="O3Y_01470"
                     /note="ATP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238983"
     misc_feature    complement(order(333728..333730,333908..333910,
                     333920..333922,334115..334117,334328..334330,
                     334340..334345))
                     /locus_tag="O3Y_01470"
                     /note="CoA-binding site [chemical binding]; other site"
                     /db_xref="CDD:238983"
     misc_feature    complement(order(334052..334054,334340..334342))
                     /locus_tag="O3Y_01470"
                     /note="Mg2+-binding site [ion binding]; other site"
                     /db_xref="CDD:238983"
     gene            334830..334905
                     /locus_tag="O3Y_t13303"
                     /db_xref="GeneID:11913250"
     tRNA            334830..334905
                     /locus_tag="O3Y_t13303"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:11913250"
     gene            334941..335025
                     /locus_tag="O3Y_t13305"
                     /db_xref="GeneID:11913251"
     tRNA            334941..335025
                     /locus_tag="O3Y_t13305"
                     /product="tRNA-Tyr"
                     /db_xref="GeneID:11913251"
     gene            335061..335135
                     /locus_tag="O3Y_t13307"
                     /db_xref="GeneID:11913252"
     tRNA            335061..335135
                     /locus_tag="O3Y_t13307"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:11913252"
     gene            335149..335224
                     /locus_tag="O3Y_t13309"
                     /db_xref="GeneID:11913253"
     tRNA            335149..335224
                     /locus_tag="O3Y_t13309"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:11913253"
     gene            335337..336521
                     /locus_tag="O3Y_01475"
                     /db_xref="GeneID:11913254"
     CDS             335337..336521
                     /locus_tag="O3Y_01475"
                     /note="COG0050 GTPases - translation elongation factors"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="YP_005332170.1"
                     /db_xref="GI:379740201"
                     /db_xref="GeneID:11913254"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGGKA
                     RDFASIDNAPEERERGITINTSHVEYDTPNRHYAHVDCPGHADYVKNMITGAAQMDGG
                     ILVVAATDGRMPQTREHILLGRQVGIPYIIVFMNKCDMVDDEELLELVEMEVRELLSE
                     YDFPGDDLPVIQGSALGALNGEAQWEAKIVELAEALDTYIPEPERAVDMAFLMPIEDV
                     FSIQGRGTVVTGRIERGILKVGDEVAIVGIKETVKTTCTGVEMFRKLLDEGRAGENVG
                     ALLRGTKREEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFR
                     TTDVTGSIELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKI
                     IA"
     misc_feature    335337..336518
                     /locus_tag="O3Y_01475"
                     /note="elongation factor Tu; Reviewed; Region: PRK00049"
                     /db_xref="CDD:234596"
     misc_feature    335367..335945
                     /locus_tag="O3Y_01475"
                     /note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
                     Region: EF_Tu; cd01884"
                     /db_xref="CDD:206671"
     misc_feature    335391..335414
                     /locus_tag="O3Y_01475"
                     /note="G1 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    order(335394..335396,335400..335402,335412..335417,
                     335424..335426,335433..335438,335448..335450,
                     335532..335537,335589..335594,335661..335666,
                     335670..335681,335688..335690,335781..335783,
                     335793..335795,335871..335876)
                     /locus_tag="O3Y_01475"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    order(335400..335417,335475..335477,335742..335747,
                     335751..335753,335856..335864)
                     /locus_tag="O3Y_01475"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    335502..335534
                     /locus_tag="O3Y_01475"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206671"
     misc_feature    335520..335522
                     /locus_tag="O3Y_01475"
                     /note="G2 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    335577..335588
                     /locus_tag="O3Y_01475"
                     /note="G3 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    335583..335639
                     /locus_tag="O3Y_01475"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206671"
     misc_feature    335742..335753
                     /locus_tag="O3Y_01475"
                     /note="G4 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    335856..335864
                     /locus_tag="O3Y_01475"
                     /note="G5 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    335967..336227
                     /locus_tag="O3Y_01475"
                     /note="EFTU_II: Elongation factor Tu domain II. Elongation
                     factors Tu (EF-Tu) are three-domain GTPases with an
                     essential function in the elongation phase of mRNA
                     translation. The GTPase center of EF-Tu is in the
                     N-terminal domain (domain I), also known as the...;
                     Region: EFTU_II; cd03697"
                     /db_xref="CDD:239668"
     misc_feature    336234..336503
                     /locus_tag="O3Y_01475"
                     /note="Domain III of elongation factor (EF) Tu. Ef-Tu
                     consists of three structural domains, designated I, II and
                     III. Domain III adopts a beta barrel structure. Domain III
                     is involved in binding to both charged tRNA and binding to
                     elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
                     /db_xref="CDD:239678"
     misc_feature    order(336270..336272,336276..336284,336336..336338,
                     336456..336464,336492..336494)
                     /locus_tag="O3Y_01475"
                     /note="Antibiotic Binding Site [chemical binding]; other
                     site"
                     /db_xref="CDD:239678"
     gene            336745..337125
                     /gene="secE"
                     /locus_tag="O3Y_01480"
                     /db_xref="GeneID:11913255"
     CDS             336745..337125
                     /gene="secE"
                     /locus_tag="O3Y_01480"
                     /note="COG0690 Preprotein translocase subunit SecE"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="YP_005332171.1"
                     /db_xref="GI:379740202"
                     /db_xref="GeneID:11913255"
                     /translation="MKANNAEAPDSSNAADTLKWVATFVLLVAAVVGNYLYGELSVVA
                     RAAGVIVLIAAALGVAATTTKGKEAIVFARESRMEVRKVVWPTRQETMQTTLIVLAVS
                     IVMALALWGIDGIMVRLVAFATGV"
     misc_feature    336844..337119
                     /gene="secE"
                     /locus_tag="O3Y_01480"
                     /note="preprotein translocase subunit SecE; Reviewed;
                     Region: secE; PRK05740"
                     /db_xref="CDD:235587"
     gene            337141..337689
                     /gene="nusG"
                     /locus_tag="O3Y_01485"
                     /db_xref="GeneID:11913256"
     CDS             337141..337689
                     /gene="nusG"
                     /locus_tag="O3Y_01485"
                     /note="COG0250 Transcription antiterminator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination protein NusG"
                     /protein_id="YP_005332172.1"
                     /db_xref="GI:379740203"
                     /db_xref="GeneID:11913256"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLV
                     PTEEVVEMRAGQRRKSERKFFPGYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAP
                     ITDKEADAILNRLEKASEAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKV
                     SVSIFGRATPVELEFGQVEKLD"
     misc_feature    337144..337686
                     /gene="nusG"
                     /locus_tag="O3Y_01485"
                     /note="transcription antitermination protein NusG;
                     Validated; Region: nusG; PRK05609"
                     /db_xref="CDD:180161"
     misc_feature    337162..337485
                     /gene="nusG"
                     /locus_tag="O3Y_01485"
                     /note="Bacterial N-Utilization Substance G (NusG)
                     N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
                     cd09891"
                     /db_xref="CDD:193580"
     misc_feature    order(337171..337173,337273..337275,337333..337335,
                     337342..337344,337348..337350,337447..337449,
                     337471..337473)
                     /gene="nusG"
                     /locus_tag="O3Y_01485"
                     /note="putative homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:193580"
     misc_feature    337513..337680
                     /gene="nusG"
                     /locus_tag="O3Y_01485"
                     /note="NusG contains an NGN domain at its N-terminus and
                     KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
                     /db_xref="CDD:240515"
     misc_feature    order(337549..337563,337570..337572,337606..337608,
                     337633..337641,337645..337656,337666..337671)
                     /gene="nusG"
                     /locus_tag="O3Y_01485"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240515"
     misc_feature    337549..337560
                     /gene="nusG"
                     /locus_tag="O3Y_01485"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240515"
     gene            337820..338248
                     /gene="rplK"
                     /locus_tag="O3Y_01490"
                     /db_xref="GeneID:11913257"
     CDS             337820..338248
                     /gene="rplK"
                     /locus_tag="O3Y_01490"
                     /note="COG0080 Ribosomal protein L11"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="YP_005332173.1"
                     /db_xref="GI:379740204"
                     /db_xref="GeneID:11913257"
                     /translation="MAKKVEAYVKLQVAAGMANPSPPVGPALGQRGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYSDRSFTFETKTPPASVLLKKAAGIKSGSARPNTAKVGTIT
                     DAQIQEIAATKAADMTGADIEAMKRSIAGTARSMGLVVEG"
     misc_feature    337820..338245
                     /gene="rplK"
                     /locus_tag="O3Y_01490"
                     /note="50S ribosomal protein L11; Validated; Region: rplK;
                     PRK00140"
                     /db_xref="CDD:234661"
     misc_feature    337844..338239
                     /gene="rplK"
                     /locus_tag="O3Y_01490"
                     /note="Ribosomal protein L11. Ribosomal protein L11,
                     together with proteins L10 and L7/L12, and 23S rRNA, form
                     the L7/L12 stalk on the surface of the large subunit of
                     the ribosome. The homologous eukaryotic cytoplasmic
                     protein is also called 60S ribosomal...; Region:
                     Ribosomal_L11; cd00349"
                     /db_xref="CDD:100101"
     misc_feature    order(337847..337849,337907..337909,338042..338050,
                     338060..338062,338081..338083,338156..338158,
                     338171..338179,338189..338191,338198..338203,
                     338210..338215,338219..338227)
                     /gene="rplK"
                     /locus_tag="O3Y_01490"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:100101"
     misc_feature    order(337847..337849,337991..337993,337997..338008,
                     338018..338020,338024..338029,338159..338164,
                     338171..338176)
                     /gene="rplK"
                     /locus_tag="O3Y_01490"
                     /note="L7/L12 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100101"
     misc_feature    order(337895..337897,337907..337909)
                     /gene="rplK"
                     /locus_tag="O3Y_01490"
                     /note="putative thiostrepton binding site; other site"
                     /db_xref="CDD:100101"
     misc_feature    order(338099..338101,338108..338110)
                     /gene="rplK"
                     /locus_tag="O3Y_01490"
                     /note="L25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100101"
     gene            338253..338954
                     /gene="rplA"
                     /locus_tag="O3Y_01495"
                     /db_xref="GeneID:11913258"
     CDS             338253..338954
                     /gene="rplA"
                     /locus_tag="O3Y_01495"
                     /note="COG0081 Ribosomal protein L1"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="YP_005332174.1"
                     /db_xref="GI:379740205"
                     /db_xref="GeneID:11913258"
                     /translation="MAKLTKRMRTIRAKVDVTKEYDINEAVALLKELATAKFVESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQGANAEAAKAAGAELVGMEDLAD
                     LVKKGEMNFDVVIASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVTFEADQLKENLEALLVALKKAKPSSAKGVFVKKVSISTTM
                     GAGVAVDQNTLSAQV"
     misc_feature    338319..338924
                     /gene="rplA"
                     /locus_tag="O3Y_01495"
                     /note="Ribosomal protein L1.  The L1 protein, located near
                     the E-site of the ribosome, forms part of the L1 stalk
                     along with 23S rRNA.  In bacteria and archaea, L1
                     functions both as a ribosomal protein that binds rRNA, and
                     as a translation repressor that binds...; Region:
                     Ribosomal_L1; cd00403"
                     /db_xref="CDD:238235"
     misc_feature    order(338358..338366,338373..338375,338379..338381,
                     338385..338387,338391..338393,338754..338756,
                     338760..338762,338766..338768,338904..338909,
                     338913..338915)
                     /gene="rplA"
                     /locus_tag="O3Y_01495"
                     /note="mRNA/rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238235"
     gene            339224..339712
                     /gene="rplJ"
                     /locus_tag="O3Y_01500"
                     /db_xref="GeneID:11913259"
     CDS             339224..339712
                     /gene="rplJ"
                     /locus_tag="O3Y_01500"
                     /note="COG0244 Ribosomal protein L10"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="YP_005332175.1"
                     /db_xref="GI:379740206"
                     /db_xref="GeneID:11913259"
                     /translation="MALNLQDKKAIVAEVNEAASGALSAVVADSRGVQVAAMTNLRKQ
                     AREAGVYLKVVRNTLARRAVEGTAYECLKDVFVGPTLIGFSNEHPGAAARLFKDFAKE
                     NKAFEIKAAAFEGVLTDPEVLATLPTYDEAIARLMMCMKEASAGKLVRTIAAVRDQKE
                     AA"
     misc_feature    339233..339697
                     /gene="rplJ"
                     /locus_tag="O3Y_01500"
                     /note="Ribosomal protein L10 family, L10 subfamily;
                     composed of bacterial 50S ribosomal protein and eukaryotic
                     mitochondrial 39S ribosomal protein, L10. L10 occupies the
                     L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
                     of L10 interacts with L11 protein...; Region:
                     Ribosomal_L10; cd05797"
                     /db_xref="CDD:240223"
     misc_feature    order(339245..339250,339257..339259,339389..339400,
                     339407..339409)
                     /gene="rplJ"
                     /locus_tag="O3Y_01500"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:240223"
     misc_feature    order(339491..339493,339560..339562,339608..339610,
                     339617..339622,339629..339634,339638..339646,
                     339650..339658,339662..339670,339677..339682,
                     339686..339691,339695..339697)
                     /gene="rplJ"
                     /locus_tag="O3Y_01500"
                     /note="Interface with L7/L12 ribosomal proteins
                     [polypeptide binding]; other site"
                     /db_xref="CDD:240223"
     gene            339779..340144
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /db_xref="GeneID:11913260"
     CDS             339779..340144
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /note="COG0222 Ribosomal protein L7/L12"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="YP_005332176.1"
                     /db_xref="GI:379740207"
                     /db_xref="GeneID:11913260"
                     /translation="MSITNEQILDAIAEMSVMQVVELISAMEEKFGVSAAAAVVSGPA
                     AAAAVEEQTEFNVILAAAGANKVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKE
                     EAEALKKELEEAGATVEVK"
     misc_feature    339785..340138
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
                     refers to the large ribosomal subunit proteins L7 and L12,
                     which are identical except that L7 is acetylated at the N
                     terminus. It is a component of the L7/L12 stalk, which is
                     located at the surface of...; Region: Ribosomal_L7_L12;
                     cd00387"
                     /db_xref="CDD:100102"
     misc_feature    order(339785..339787,339824..339832,339839..339844,
                     339851..339853,339860..339862,339890..339895,
                     339899..339907,339935..339940,340001..340003,
                     340007..340012,340016..340018,340022..340027,
                     340067..340072,340076..340078,340085..340087)
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /note="core dimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:100102"
     misc_feature    order(339794..339796,339803..339805,339815..339817,
                     339854..339856,339869..339871)
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /note="peripheral dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:100102"
     misc_feature    order(339836..339838,339845..339850,339860..339862,
                     339869..339871)
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /note="L10 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    order(339974..339979,339986..339991,339998..340000,
                     340019..340024,340031..340033)
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /note="L11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    order(339977..339979,339989..339991,339998..340000,
                     340019..340024,340031..340033)
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /note="putative EF-Tu interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    order(339977..339979,339986..339991,339998..340000)
                     /gene="rplL"
                     /locus_tag="O3Y_01505"
                     /note="putative EF-G interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:100102"
     gene            340385..344410
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /db_xref="GeneID:11913261"
     CDS             340385..344410
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /EC_number="2.7.7.6"
                     /note="COG0085 DNA-directed RNA polymerase, beta
                     subunit/140 kD subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="YP_005332177.1"
                     /db_xref="GI:379740208"
                     /db_xref="GeneID:11913261"
                     /translation="MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPE
                     GQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRL
                     VIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSA
                     EILDIFFEKVNFEVKDQTLMMELVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQ
                     LEKDGVNFIEVPVEYIVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLE
                     VLFTNDLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSA
                     ERYDLSTVGRMKFNSSIGREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEG
                     PNIGLINSLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLT
                     EEGGFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEE
                     LIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQ
                     NMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLL
                     ARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQ
                     KVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLP
                     ASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPE
                     SFNVLLKEIRSLGINIELEDE"
     misc_feature    340385..344407
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /note="DNA-directed RNA polymerase subunit beta; Reviewed;
                     Region: rpoB; PRK00405"
                     /db_xref="CDD:234749"
     misc_feature    340463..344401
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /note="RNA polymerase beta subunit. RNA polymerases
                     catalyse the DNA dependent polymerization of RNA.
                     Prokaryotes contain a single RNA polymerase compared to
                     three in eukaryotes (not including mitochondrial. and
                     chloroplast polymerases). Each RNA polymerase...; Region:
                     RNA_pol_B_RPB2; cd00653"
                     /db_xref="CDD:238353"
     misc_feature    order(340646..340648,342869..342871,342980..342982,
                     342986..342988,342998..343006,343010..343012)
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /note="RPB12 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    order(342020..342022,342026..342034,342038..342040,
                     342047..342049,342062..342064,342344..342346,
                     342398..342406,342410..342412,342794..342805,
                     342812..342814,342818..342826,343601..343603,
                     343607..343609,343613..343615,343679..343681,
                     343685..343687,343694..343696,343703..343705,
                     343718..343720,343730..343732,343940..343942,
                     344021..344023,344045..344053,344057..344059,
                     344096..344098,344105..344113,344117..344122,
                     344183..344191,344201..344203,344207..344212,
                     344216..344218,344222..344239,344243..344260,
                     344270..344272,344339..344341,344351..344353,
                     344357..344359,344363..344368,344372..344374,
                     344378..344389,344393..344395,344399..344401)
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /note="RPB1 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    342155..342352
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /note="RNA polymerase beta subunit external 1 domain;
                     Region: RNA_pol_Rpb2_45; pfam10385"
                     /db_xref="CDD:255954"
     misc_feature    order(342470..342475,342779..342781,342785..342787,
                     342848..342850,342857..342859,343628..343630,
                     343667..343669,343748..343750,343814..343816,
                     343820..343822,344009..344011,344060..344062)
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /note="RPB10 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    order(342812..342814,342854..342856,343625..343627,
                     344027..344029)
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /note="RPB11 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    order(342854..342859,342869..342871,343547..343549,
                     343553..343555,343628..343636,343643..343645,
                     343649..343654,344024..344047,344051..344053)
                     /gene="rpoB"
                     /locus_tag="O3Y_01510"
                     /note="RPB3 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     gene            344515..348720
                     /locus_tag="O3Y_01515"
                     /db_xref="GeneID:11913262"
     CDS             344515..348720
                     /locus_tag="O3Y_01515"
                     /EC_number="2.7.7.6"
                     /note="COG0086 DNA-directed RNA polymerase, beta'
                     subunit/160 kD subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="YP_005332178.1"
                     /db_xref="GI:379740209"
                     /db_xref="GeneID:11913262"
                     /translation="MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRM
                     GHIELASPVAHIWFLKSLPSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQML
                     TEEEYLDRLEEWGDEFTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLT
                     KRLKLVEAFVASGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVL
                     GLYYMTREKINAKGEGMYLTGPAEAEKAYRTKTAELHARVKVRITETIKHENGKLTTE
                     TKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQISNLLNEAYRKLGLKDTVIFADQI
                     MYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEEVREIQEQFQSGLVTAGERYNKV
                     IDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGTDEV
                     LIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGEA
                     VGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKLHNAKFVTNKDGK
                     LVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITE
                     VAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDV
                     LIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFE
                     ARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIE
                     RGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRK
                     CTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFIS
                     AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQG
                     PSAEQATDNLAALLNAGFSSDDE"
     misc_feature    344557..346953
                     /locus_tag="O3Y_01515"
                     /note="Largest subunit (beta') of bacterial DNA-dependent
                     RNA polymerase (RNAP), N-terminal domain; Region:
                     RNAP_beta'_N; cd01609"
                     /db_xref="CDD:259845"
     misc_feature    order(344557..344583,344587..344589,344599..344601,
                     344608..344619,344653..344655,344659..344661,
                     344710..344712,344743..344745,344800..344805,
                     344809..344820,344851..344853,344857..344859,
                     345229..345231,345241..345243,345247..345249,
                     345256..345261,345265..345267,345271..345273,
                     345280..345285,345433..345435,345493..345495,
                     345502..345507,345523..345585,345589..345591,
                     345625..345630,345637..345642,345649..345654,
                     345658..345663,345706..345708,345784..345786,
                     345796..345798,345805..345810,345814..345819,
                     345847..345852,345865..345867,345892..345900,
                     345907..345909,345919..345942,345949..345951,
                     345961..345966,345979..345981,346021..346029,
                     346036..346038,346048..346050,346063..346065,
                     346399..346404,346408..346443,346669..346671,
                     346687..346689,346705..346707,346720..346722,
                     346729..346734,346744..346746,346759..346764,
                     346783..346785,346801..346824,346828..346833,
                     346840..346845,346849..346857,346861..346869,
                     346873..346878,346906..346908,346915..346917)
                     /locus_tag="O3Y_01515"
                     /note="beta and beta' interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:259845"
     misc_feature    344560..348657
                     /locus_tag="O3Y_01515"
                     /note="DNA-directed RNA polymerase subunit beta';
                     Provisional; Region: PRK00566"
                     /db_xref="CDD:234794"
     misc_feature    order(344638..344646,344650..344652,344707..344709,
                     344713..344715,344743..344745,344749..344751,
                     344797..344799,344932..344937,345265..345270,
                     345277..345279,345289..345306,345313..345315,
                     345322..345324,345334..345339,345346..345348,
                     345352..345363,345373..345399,345403..345408,
                     345415..345417,345448..345450,345478..345480,
                     345487..345489,345514..345519,345703..345705,
                     345709..345714)
                     /locus_tag="O3Y_01515"
                     /note="beta' and sigma factor interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:259845"
     misc_feature    order(344722..344724,344728..344730,344767..344769,
                     344776..344778)
                     /locus_tag="O3Y_01515"
                     /note="Zn-binding [ion binding]; other site"
                     /db_xref="CDD:259845"
     misc_feature    order(344875..344877,345445..345447,345514..345516,
                     345529..345531,345550..345552,345568..345570,
                     345787..345795,345892..345894,345898..345900,
                     345904..345906,346882..346887,346894..346899)
                     /locus_tag="O3Y_01515"
                     /note="active site region [active]"
                     /db_xref="CDD:259845"
     misc_feature    order(345892..345894,345898..345900,345904..345906)
                     /locus_tag="O3Y_01515"
                     /note="catalytic site [active]"
                     /db_xref="CDD:259845"
     misc_feature    347233..348600
                     /locus_tag="O3Y_01515"
                     /note="Largest subunit (beta') of Bacterial DNA-dependent
                     RNA polymerase (RNAP), C-terminal domain; Region:
                     RNAP_beta'_C; cd02655"
                     /db_xref="CDD:132721"
     misc_feature    order(347233..347235,347242..347247,347251..347253,
                     348592..348594)
                     /locus_tag="O3Y_01515"
                     /note="Rpb1 (beta') - Rpb6 (omega) interaction site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:132721"
     misc_feature    order(347263..347265,347275..347277,348532..348534,
                     348550..348552,348568..348570,348577..348582,
                     348592..348594)
                     /locus_tag="O3Y_01515"
                     /note="Rpb1 (beta') - Rpb2 (beta) interaction site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:132721"
     misc_feature    order(347308..347331,347605..347607)
                     /locus_tag="O3Y_01515"
                     /note="G-loop; other site"
                     /db_xref="CDD:132721"
     misc_feature    order(347956..347958,348442..348444,348487..348492)
                     /locus_tag="O3Y_01515"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:132721"
     gene            complement(348831..349325)
                     /locus_tag="O3Y_01520"
                     /db_xref="GeneID:11913263"
     CDS             complement(348831..349325)
                     /locus_tag="O3Y_01520"
                     /note="COG3160 Regulator of sigma D"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-RNA polymerase sigma 70 factor"
                     /protein_id="YP_005332179.1"
                     /db_xref="GI:379740210"
                     /db_xref="GeneID:11913263"
                     /translation="MVMLRKFKNVQEQWGGSSDIIDHWLDKRQHVIVEYCKLAALQPC
                     TTKAAVSELPSPQALLYFCQELVDYISEGHFKIYDMVMDKWHATGFKATDEINQVYGK
                     IVATTEPLLNFNDQYATVTEYDELLDLDRDLSKVGEVLELRFSLEDQLIQLIADSLAV
                     PPGA"
     misc_feature    complement(348834..349319)
                     /locus_tag="O3Y_01520"
                     /note="Regulator of sigma D [Transcription]; Region: Rsd;
                     COG3160"
                     /db_xref="CDD:225702"
     gene            349503..350279
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /db_xref="GeneID:11913264"
     CDS             349503..350279
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="COG2816 NTP pyrophosphohydrolases containing a
                     Zn-finger, probably nucleic-acid-binding"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH pyrophosphatase"
                     /protein_id="YP_005332180.1"
                     /db_xref="GI:379740211"
                     /db_xref="GeneID:11913264"
                     /translation="MEKSDGKNAYWCVVSGSDLWLVDGQIPYGSAEQWDLPQEKAILV
                     DRYQNSPVYWLNAADIEQDRPLTSLRELLGVDEALFLAASKAVQYGHMSQTIRFCPQC
                     GGRNYLNHQQLAMQCHDCRTLHYPRIFPCIIVAVRKQQQILLAQHPRHRNGMYTVIAG
                     FVEVGETLEQCVAREVLEETGIVVTNIRYFGSQPWAFPSSMMMAFLADYDTGELKPDY
                     SELSDANWFGIENLPPVAPRGTIARALIEQTLADIAQDQA"
     misc_feature    349521..350261
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="NADH pyrophosphatase; Reviewed; Region: nudC;
                     PRK00241"
                     /db_xref="CDD:234699"
     misc_feature    349524..349778
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="NADH pyrophosphatase-like rudimentary NUDIX domain;
                     Region: NUDIX-like; pfam09296"
                     /db_xref="CDD:255270"
     misc_feature    349791..349877
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="NADH pyrophosphatase zinc ribbon domain; Region:
                     zf-NADH-PPase; pfam09297"
                     /db_xref="CDD:255271"
     misc_feature    349890..350255
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="NADH pyrophosphatase, a member of the Nudix
                     hydrolase superfamily, catalyzes the cleavage of NADH into
                     reduced nicotinamide mononucleotide (NMNH) and AMP. Like
                     other members of the Nudix family, it requires a divalent
                     cation, such as Mg2+ or Mn2+, for...; Region:
                     NADH_pyrophosphatase; cd03429"
                     /db_xref="CDD:239521"
     misc_feature    order(349893..349895,349977..349985,350085..350087,
                     350094..350096,350100..350102,350106..350108)
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="putative NADH binding site [chemical binding];
                     other site"
                     /db_xref="CDD:239521"
     misc_feature    order(349980..349985,349989..349991,350025..350027,
                     350034..350039,350085..350087,350094..350096,
                     350100..350102,350106..350108)
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="putative active site [active]"
                     /db_xref="CDD:239521"
     misc_feature    349980..350048
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="nudix motif; other site"
                     /db_xref="CDD:239521"
     misc_feature    order(350025..350027,350034..350039,350160..350162)
                     /gene="nudC"
                     /locus_tag="O3Y_01525"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:239521"
     gene            350534..351601
                     /gene="hemE"
                     /locus_tag="O3Y_01530"
                     /db_xref="GeneID:11913265"
     CDS             350534..351601
                     /gene="hemE"
                     /locus_tag="O3Y_01530"
                     /EC_number="4.1.1.37"
                     /note="COG0407 Uroporphyrinogen-III decarboxylase"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="YP_005332181.1"
                     /db_xref="GI:379740212"
                     /db_xref="GeneID:11913265"
                     /translation="MTELKNDRYLRALLKQPVDYTPVWMMRQAGRYLPEYRATRAQAG
                     DFMALCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPVFERP
                     ITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMMYSEPTVLHALLDKLADSVISYLNAQIKAGAQAVMVFDTWGGVLTPRD
                     YQQFSLQYMHKIVDGLIRENEGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWTINIA
                     DAKARVGDKVALQGNMDPSILYAPAPRIREEVASILAGFGQGGTGHVFNLGHGIHLDV
                     PPENAGVFVEAVHELSKPYHP"
     misc_feature    350561..351577
                     /gene="hemE"
                     /locus_tag="O3Y_01530"
                     /note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric
                     cytosolic enzyme that decarboxylates the four acetate side
                     chains of uroporphyrinogen III (uro-III) to create
                     coproporphyrinogen III, without requiring any prosthetic
                     groups or cofactors. This reaction...; Region: URO-D;
                     cd00717"
                     /db_xref="CDD:238368"
     misc_feature    order(350609..350626,350639..350641,350651..350653,
                     350669..350671,350750..350770,350804..350806,
                     350819..350821,350963..350965,350993..350995,
                     351011..351013,351152..351154,351158..351163,
                     351275..351277,351515..351517)
                     /gene="hemE"
                     /locus_tag="O3Y_01530"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:238368"
     misc_feature    order(350612..350614,350624..350626,350762..350764,
                     350993..350995,351158..351160,351515..351517)
                     /gene="hemE"
                     /locus_tag="O3Y_01530"
                     /note="active site"
                     /db_xref="CDD:238368"
     gene            351700..352335
                     /locus_tag="O3Y_01535"
                     /db_xref="GeneID:11913266"
     CDS             351700..352335
                     /locus_tag="O3Y_01535"
                     /note="COG1309 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="YP_005332182.1"
                     /db_xref="GI:379740213"
                     /db_xref="GeneID:11913266"
                     /translation="MKTKDRIVHAALELFNQQGERNITTNHIAAHIEISPGNLYYHFR
                     NKQEIVRDIFALYSAELIERFTPLQGQYESLSLLKHYLDSIFTLMWKYRFFYANLPEI
                     LQRDEELHADYIRVQERLQTNLIDIVRNFVNLQLLELNEDEMPKLVRTLHLIASSWLG
                     YQSAMSHKTQITEEVIHQGMLQMISVVKPCATKAGREQLQLLEEGVRAMHA"
     misc_feature    351703..352200
                     /locus_tag="O3Y_01535"
                     /note="Transcriptional regulator [Transcription]; Region:
                     AcrR; COG1309"
                     /db_xref="CDD:224228"
     misc_feature    351718..351858
                     /locus_tag="O3Y_01535"
                     /note="Bacterial regulatory proteins, tetR family; Region:
                     TetR_N; pfam00440"
                     /db_xref="CDD:249860"
     misc_feature    351862..352299
                     /locus_tag="O3Y_01535"
                     /note="Bacterial transcriptional repressor; Region: TetR;
                     pfam13972"
                     /db_xref="CDD:258224"
     gene            352422..353381
                     /locus_tag="O3Y_01540"
                     /db_xref="GeneID:11913267"
     CDS             352422..353381
                     /locus_tag="O3Y_01540"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332183.1"
                     /db_xref="GI:379740214"
                     /db_xref="GeneID:11913267"
                     /translation="MDYDVFNGDADGILSLVQWRLVHPKSTQLVTGVKRDIALLERLT
                     VTAGDELVVLDISMAKNQLGLQRALQAGAHVFYADHHQPGDIPAHSALQAHIDTDANL
                     CTALIIDRLLKGRFRDWAITAAFGDNLHRVAHTLAEEAGFDAAQTDALCELGTLINYN
                     GYGRTVSELHFAPDTLYQTLLAYQTPWAVLADLNSPFYQLRSAYQQDFAFALAQPAYY
                     RSSSVTVVILPDCAAAQRVSGAFANHLANQDMQRAHLIVTYADEQHYTLSLRAPLSDK
                     RGAGALCAQFPSGGGRESAGGINQLPYALLDNVIAVVEAFYAS"
     gene            complement(353378..354526)
                     /locus_tag="O3Y_01545"
                     /db_xref="GeneID:11913268"
     CDS             complement(353378..354526)
                     /locus_tag="O3Y_01545"
                     /note="COG4942 Membrane-bound metallopeptidase"
                     /codon_start=1
                     /transl_table=11
                     /product="NlpD-likeprotein"
                     /protein_id="YP_005332184.1"
                     /db_xref="GI:379740215"
                     /db_xref="GeneID:11913268"
                     /translation="MTATDPHAIFSDFLGKTLTRRLLVCLLFMVSPSLFAATQQELTG
                     VKSEISRQQQSLAEQQKSLDQLQQALKQQELGINSIENQITKTKNDLENANRNIAQLN
                     SNIQALETQKQQQADKLERLLQTYYLTKRSLTNGQFFHRSADEDRISQYYQHLAKSRA
                     QAIEALEKTQADLNASQQQRQAEREQIEKLLAEQTQQRDKLAKTQSERKQTVKKIESS
                     ISGDKVYLAELQRNETRLKAEIAKAAKRNAVLMNGIASQRGKLPWPLKGRVLHNFGER
                     QTGQIDWKGLVIDANYGQEVKAVYPGTIVFAEYLRGYGLVVLLDHGKGDMTLYGFNQT
                     LLKKEGDKVIAGETIALAGDTGGQSRPALYFEIRRNSRAENPSQWLQR"
     misc_feature    complement(353381..354526)
                     /locus_tag="O3Y_01545"
                     /note="Membrane-bound metallopeptidase [Cell division and
                     chromosome partitioning]; Region: COG4942"
                     /db_xref="CDD:227278"
     misc_feature    complement(353399..353680)
                     /locus_tag="O3Y_01545"
                     /note="Peptidase family M23; Region: Peptidase_M23;
                     pfam01551"
                     /db_xref="CDD:250701"
     gene            complement(354695..356227)
                     /locus_tag="O3Y_01550"
                     /db_xref="GeneID:11913269"
     CDS             complement(354695..356227)
                     /locus_tag="O3Y_01550"
                     /EC_number="5.4.2.1"
                     /note="COG0696 Phosphoglyceromutase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglyceromutase"
                     /protein_id="YP_005332185.1"
                     /db_xref="GI:379740216"
                     /db_xref="GeneID:11913269"
                     /translation="MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT
                     LISASGMDVGLPDGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAI
                     DKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRS
                     AEASLKRFQDLFAKLGKGRIASIVGRYYAMDRDNNWDRVEKAYDLLTLAQGEFTYDSA
                     VEALQAAYAREENDEFVKATEIRAAGQESAAMQDGDALLFMNYRADRARQITRTFVPD
                     FAGFSRKAFPALDFVMLTQYAADIPLQCAFGPASLENTYGEWLSKAGKTQLRISETEK
                     YAHVTFFFNGGVENEFPGEERQLVASPKVATYDLQPEMSSKELTDKLVAAIKSGKYDA
                     IICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMI
                     DPETGGVHTAHTSLPVPLIYVGNKAISLKEGGKLSDLAPTMLALSDLDIPADMSGQVL
                     YS"
     misc_feature    complement(354704..356227)
                     /locus_tag="O3Y_01550"
                     /note="phosphoglyceromutase; Provisional; Region:
                     PRK05434"
                     /db_xref="CDD:235463"
     gene            complement(356370..357257)
                     /locus_tag="O3Y_01555"
                     /db_xref="GeneID:11913270"
     CDS             complement(356370..357257)
                     /locus_tag="O3Y_01555"
                     /note="COG0697 Permeases of the drug/metabolite
                     transporter (DMT) superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332186.1"
                     /db_xref="GI:379740217"
                     /db_xref="GeneID:11913270"
                     /translation="MGYEWLALAAACLWAIASLLSITPAKHLGSFAYSRWRMGCTSVI
                     LTTIALFSGGWSTVHSSAIPAMMLSGFIGIFIGDTALFACLNRMGPRQSGLLFSCHAV
                     FSAVLGYFLFSESMTKQELFGSTLVFSGVLMAIFFGRRGQTGPSLDSINGSVWVGIGL
                     GLTAALCQALGGIIAKPVMQTEIDPIAASAMRMITAFAAHSLLRLTGARIARPTQIIT
                     LNIFLVTALNGFIAMAVGMTLILYALREGNVGMVALLSSTTPIMLLPLLWIYTKQCPN
                     RYAWLGAILAVGGTSLLVS"
     misc_feature    complement(356379..357203)
                     /locus_tag="O3Y_01555"
                     /note="Permeases of the drug/metabolite transporter (DMT)
                     superfamily [Carbohydrate transport and metabolism / Amino
                     acid transport and metabolism / General function
                     prediction only]; Region: RhaT; COG0697"
                     /db_xref="CDD:223769"
     misc_feature    complement(356850..>357140)
                     /locus_tag="O3Y_01555"
                     /note="EamA-like transporter family; Region: EamA;
                     pfam00892"
                     /db_xref="CDD:250209"
     misc_feature    complement(356376..356762)
                     /locus_tag="O3Y_01555"
                     /note="EamA-like transporter family; Region: EamA;
                     pfam00892"
                     /db_xref="CDD:250209"
     gene            complement(357409..358824)
                     /locus_tag="O3Y_01560"
                     /db_xref="GeneID:11913271"
     CDS             complement(357409..358824)
                     /locus_tag="O3Y_01560"
                     /note="COG0471 Di- and tricarboxylate transporters"
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="YP_005332187.1"
                     /db_xref="GI:379740218"
                     /db_xref="GeneID:11913271"
                     /translation="MPQLERGLLVKLLICFLLPLGVLLMPIDAIPIQDLTLVQHRLLA
                     IFLLAALLWVLEPVPVFATSILIIALELVMISDKGLHGFRVPDPHHPLGELLKYTDIF
                     SAFSSPIIILFMGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLGLMLITSVFSM
                     FMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIGTPPNAIAL
                     QYLTGENSIDFLSWMMMGLPFVLVQLTIAWFLLQKLFPSSQATMTLKLKGEFQRGWRA
                     MLVYITFALTIVLWMTTSWHGMNTYVVAIIPLAVFTLTGIMGKEELKQINWDVLWLVA
                     GGIAIGIGLEQTGLAQALAHSIDYQSLSPMLIVIALSLVCWLMANFMSNTATANLIMP
                     IAAAIGTSMSSLEQVGGLQALLVVVAFSASLGMILPVSTPPNSLAYSTGLIESKDMAK
                     TGLVIGGIGLGIVYLMVFLLG"
     misc_feature    complement(357472..358803)
                     /locus_tag="O3Y_01560"
                     /note="Di- and tricarboxylate transporters [Inorganic ion
                     transport and metabolism]; Region: CitT; COG0471"
                     /db_xref="CDD:223547"
     misc_feature    complement(357475..358668)
                     /locus_tag="O3Y_01560"
                     /note="Permease SLC13 (solute carrier 13).  The
                     sodium/dicarboxylate cotransporter NaDC-1 has been shown
                     to translocate Krebs cycle intermediates such as
                     succinate, citrate, and alpha-ketoglutarate across plasma
                     membranes rabbit, human, and rat kidney. It is...; Region:
                     SLC13_permease; cd01115"
                     /db_xref="CDD:238535"
     misc_feature    complement(order(357556..357603,357619..357630,
                     357682..357729,357796..357852,357895..357915,
                     357916..357930,357952..357990,358084..358128,
                     358186..358257,358267..358281,358291..358329,
                     358333..358383,358453..358506,358606..358647,
                     358666..358668))
                     /locus_tag="O3Y_01560"
                     /note="transmembrane helices; other site"
                     /db_xref="CDD:238535"
     gene            complement(359032..359889)
                     /gene="psd"
                     /locus_tag="O3Y_01565"
                     /db_xref="GeneID:11913272"
     CDS             complement(359032..359889)
                     /gene="psd"
                     /locus_tag="O3Y_01565"
                     /EC_number="4.1.1.65"
                     /note="COG0688 Phosphatidylserine decarboxylase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="YP_005332188.1"
                     /db_xref="GI:379740219"
                     /db_xref="GeneID:11913272"
                     /translation="MDKIKVGLQYWIPQHALTRLVGKLASARAGSLTTAIIRWFIKQY
                     NVNMDEALHSDPTHFKTFNEFFVRELKAGVRPIAEGEKVITHPADACVSQFGAIEYGK
                     LIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVP
                     GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIELVWAGTVTP
                     PRGNTVYRWDYPANGNQAVVLKKGEEMGRFKLGSTVINLFAKQAIRFDDSMALGAPTR
                     MGEPYAHQA"
     misc_feature    complement(359035..359889)
                     /gene="psd"
                     /locus_tag="O3Y_01565"
                     /note="phosphatidylserine decarboxylase; Reviewed; Region:
                     psd; PRK00044"
                     /db_xref="CDD:234591"
     gene            complement(359985..361046)
                     /locus_tag="O3Y_01570"
                     /db_xref="GeneID:11913273"
     CDS             complement(359985..361046)
                     /locus_tag="O3Y_01570"
                     /note="COG1162 Predicted GTPases"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase RsgA"
                     /protein_id="YP_005332189.1"
                     /db_xref="GI:379740220"
                     /db_xref="GeneID:11913273"
                     /translation="MTKKKKLTHGQVRRVRNNQHKKLKQEESIVWDEALLGSAQPGLV
                     ITRFGQHADIEDPVTGEIHRCNLRRGIESLVSGDNVLWRPGAETLAGISGVVEAVEAR
                     SSVLVRPDYYDGLKPVAANVDQMVIVSSVLPELSLNIIDRYLIASETLGIAPLIVLNK
                     IDLLSPELREQYSTWLNDYRAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVG
                     KSSLVNALLPELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLW
                     HLETDDVTKAYVEFRPYLGGCKFRDCKHGDDPGCLLREAVSKGEISALRFDNYHRIVQ
                     SMTENKANRQYSRSKKADL"
     misc_feature    complement(359997..361040)
                     /locus_tag="O3Y_01570"
                     /note="GTPase RsgA; Reviewed; Region: PRK12288"
                     /db_xref="CDD:237039"
     misc_feature    complement(360723..360929)
                     /locus_tag="O3Y_01570"
                     /note="S1_like: Ribosomal protein S1-like RNA-binding
                     domain. Found in a wide variety of RNA-associated
                     proteins. Originally identified in S1 ribosomal protein.
                     This superfamily also contains the Cold Shock Domain
                     (CSD), which is a homolog of the S1 domain; Region:
                     S1_like; cl09927"
                     /db_xref="CDD:271676"
     misc_feature    complement(order(360855..360857,360888..360890,
                     360912..360914))
                     /locus_tag="O3Y_01570"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:238094"
     misc_feature    complement(360045..360689)
                     /locus_tag="O3Y_01570"
                     /note="Ribosomal interacting GTPase YjeQ/EngC, a
                     circularly permuted subfamily of the Ras GTPases; Region:
                     YjeQ_EngC; cd01854"
                     /db_xref="CDD:206747"
     misc_feature    complement(order(360051..360053,360063..360065,
                     360072..360074,360183..360185,360189..360191,
                     360201..360203,360495..360497,360600..360605,
                     360612..360617,360621..360626,360633..360638))
                     /locus_tag="O3Y_01570"
                     /note="GTPase/Zn-binding domain interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206747"
     misc_feature    complement(order(360384..360401,360474..360479,
                     360558..360563,360567..360572))
                     /locus_tag="O3Y_01570"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206747"
     misc_feature    complement(360561..360572)
                     /locus_tag="O3Y_01570"
                     /note="G4 box; other site"
                     /db_xref="CDD:206747"
     misc_feature    complement(360471..360479)
                     /locus_tag="O3Y_01570"
                     /note="G5 box; other site"
                     /db_xref="CDD:206747"
     misc_feature    complement(360387..360410)
                     /locus_tag="O3Y_01570"
                     /note="G1 box; other site"
                     /db_xref="CDD:206747"
     misc_feature    complement(360285..360308)
                     /locus_tag="O3Y_01570"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206747"
     misc_feature    complement(360297..360299)
                     /locus_tag="O3Y_01570"
                     /note="G2 box; other site"
                     /db_xref="CDD:206747"
     misc_feature    complement(360240..360251)
                     /locus_tag="O3Y_01570"
                     /note="G3 box; other site"
                     /db_xref="CDD:206747"
     misc_feature    complement(360237..360245)
                     /locus_tag="O3Y_01570"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206747"
     gene            361169..361714
                     /locus_tag="O3Y_01575"
                     /db_xref="GeneID:11913274"
     CDS             361169..361714
                     /locus_tag="O3Y_01575"
                     /EC_number="3.1.-.-"
                     /note="COG1949 Oligoribonuclease (3'->5' exoribonuclease)"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="YP_005332190.1"
                     /db_xref="GI:379740221"
                     /db_xref="GeneID:11913274"
                     /translation="MSFSDQNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGP
                     VIAIHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKS
                     PICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRWQPEVLKEFSKTGSHLA
                     LDDIRESIAELQFYRKAVFKI"
     misc_feature    361190..361705
                     /locus_tag="O3Y_01575"
                     /note="DEDDh 3'-5' exonuclease domain of oligoribonuclease
                     and similar proteins; Region: Orn; cd06135"
                     /db_xref="CDD:99838"
     misc_feature    order(361202..361213,361217..361219,361487..361492,
                     361496..361504,361640..361642,361655..361657)
                     /locus_tag="O3Y_01575"
                     /note="putative active site [active]"
                     /db_xref="CDD:99838"
     misc_feature    order(361202..361213,361217..361219,361487..361492,
                     361496..361501,361640..361642,361655..361657)
                     /locus_tag="O3Y_01575"
                     /note="putative substrate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:99838"
     misc_feature    order(361202..361204,361208..361210,361502..361504,
                     361640..361642,361655..361657)
                     /locus_tag="O3Y_01575"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99838"
     misc_feature    order(361271..361273,361496..361501,361508..361510,
                     361517..361519,361556..361561,361565..361567,
                     361574..361576,361583..361585,361598..361603,
                     361694..361696,361700..361705)
                     /locus_tag="O3Y_01575"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:99838"
     gene            361873..361948
                     /locus_tag="O3Y_t13311"
                     /db_xref="GeneID:11913275"
     tRNA            361873..361948
                     /locus_tag="O3Y_t13311"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:11913275"
     gene            361983..362058
                     /locus_tag="O3Y_t13313"
                     /db_xref="GeneID:11913276"
     tRNA            361983..362058
                     /locus_tag="O3Y_t13313"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:11913276"
     gene            362215..362290
                     /locus_tag="O3Y_t13315"
                     /db_xref="GeneID:11913277"
     tRNA            362215..362290
                     /locus_tag="O3Y_t13315"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:11913277"
     gene            362330..362406
                     /locus_tag="O3Y_t13317"
                     /db_xref="GeneID:11913278"
     tRNA            362330..362406
                     /locus_tag="O3Y_t13317"
                     /product="tRNA-Met"
                     /db_xref="GeneID:11913278"
     gene            362441..362516
                     /locus_tag="O3Y_t13319"
                     /db_xref="GeneID:11913279"
     tRNA            362441..362516
                     /locus_tag="O3Y_t13319"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:11913279"
     gene            362703..362779
                     /locus_tag="O3Y_t13321"
                     /db_xref="GeneID:11913280"
     tRNA            362703..362779
                     /locus_tag="O3Y_t13321"
                     /product="tRNA-Met"
                     /db_xref="GeneID:11913280"
     gene            362822..362898
                     /locus_tag="O3Y_t13323"
                     /db_xref="GeneID:11913281"
     tRNA            362822..362898
                     /locus_tag="O3Y_t13323"
                     /product="tRNA-Met"
                     /db_xref="GeneID:11913281"
     gene            362941..363017
                     /locus_tag="O3Y_t13325"
                     /db_xref="GeneID:11913282"
     tRNA            362941..363017
                     /locus_tag="O3Y_t13325"
                     /product="tRNA-Met"
                     /db_xref="GeneID:11913282"
     gene            complement(363587..364696)
                     /locus_tag="O3Y_01580"
                     /db_xref="GeneID:11913283"
     CDS             complement(363587..364696)
                     /locus_tag="O3Y_01580"
                     /note="COG1600 Uncharacterized Fe-S protein"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="YP_005332191.1"
                     /db_xref="GI:379740222"
                     /db_xref="GeneID:11913283"
                     /translation="MDYQQLANQIKQWAIELGFEKVGICDVDLSEHEPALQAWLDAGY
                     HCEMDWMARHGMMRARPAELLPGTLRVISARINYLPPQAQFASNLSDPNQAYISRYAL
                     GRDYHKLVRNQLKKLGEKIEQEVGKLGYRPFVDSAPILERPLAQKAGLGWTGKHSLIL
                     DKENGSWFFLGELLVDIPLPVDEPSENQCGKCTACITSCPTNAIVAEGVVDARRCVSY
                     LTIEYSGVIPLEFRRAMGNRIYGCDDCQLVCPWNRFAPLTQQSDFHRRQSLNNADLVV
                     LFEWDEATFLKNMEGSAIRRIGHQQWRRNLIIAMGNAPYSPRIIDTLQRHLGQSELLD
                     EHIHWALEEQTQKTATPRQHARLIRIIEKGLPRDA"
     misc_feature    complement(363665..364669)
                     /locus_tag="O3Y_01580"
                     /note="epoxyqueuosine reductase; Region: TIGR00276"
                     /db_xref="CDD:213520"
     misc_feature    complement(364289..364525)
                     /locus_tag="O3Y_01580"
                     /note="Domain of unknown function (DUF1730); Region:
                     DUF1730; pfam08331"
                     /db_xref="CDD:254735"
     misc_feature    complement(363941..364132)
                     /locus_tag="O3Y_01580"
                     /note="4Fe-4S double cluster binding domain; Region:
                     Fer4_16; pfam13484"
                     /db_xref="CDD:257808"
     gene            364901..365365
                     /locus_tag="O3Y_01585"
                     /db_xref="GeneID:11913284"
     CDS             364901..365365
                     /locus_tag="O3Y_01585"
                     /note="COG0802 Predicted ATPase or kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332192.1"
                     /db_xref="GI:379740223"
                     /db_xref="GeneID:11913284"
                     /translation="MNSKIFSLKDEQATIELGRALALICSQQTTLYLHGDLGAGKTTF
                     SRGFIRALGHQGNVKSPTYTLVEPYQLGMWQVYHFDLYRLADPEELEFMGIRDYFSAD
                     AICLVEWPEKGHGLLPNADLDIDLRYDGDQRVATLTANNHYGCDLLSQLELC"
     misc_feature    364901..365353
                     /locus_tag="O3Y_01585"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl21455"
                     /db_xref="CDD:271875"
     gene            365359..367077
                     /locus_tag="O3Y_01590"
                     /db_xref="GeneID:11913285"
     CDS             365359..367077
                     /locus_tag="O3Y_01590"
                     /note="COG0860 N-acetylmuramoyl-L-alanine amidase"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="YP_005332193.1"
                     /db_xref="GI:379740224"
                     /db_xref="GeneID:11913285"
                     /translation="MLNVSRFVFLLFGFVLLAIAPQTWANVLEGVRVWPSPDETRVVL
                     DVKSEVDYSYFTLSSPERLVVDLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRL
                     VFELKQKTTPTLFKLAPTPGGQYGHRLVIDMPHGKVSESSSASTPSSPAQVSKDASQL
                     LGNDDIVVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRG
                     DYFVNLNKRTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENH
                     EQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHK
                     TEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFED
                     NPPEGTLFANRGKAQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTI
                     PASSAPNPVPVPVMANPVETETITHVVKTGDFLGKLATTYKVSVASIKKENNLKSDTL
                     VLGQKLKITVSLKDKPLRKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQ
                     LIIPNK"
     misc_feature    365401..366552
                     /locus_tag="O3Y_01590"
                     /note="N-acetylmuramoyl-l-alanine amidase II; Provisional;
                     Region: PRK10431"
                     /db_xref="CDD:236692"
     misc_feature    365449..365754
                     /locus_tag="O3Y_01590"
                     /note="AMIN domain; Region: AMIN; pfam11741"
                     /db_xref="CDD:256588"
     misc_feature    365857..366519
                     /locus_tag="O3Y_01590"
                     /note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
                     (also known as peptidoglycan aminohydrolase, NAMLA
                     amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
                     3.5.1.28) is an autolysin that hydrolyzes the amide bond
                     between N-acetylmuramoyl and L-amino...; Region:
                     MurNAc-LAA; cd02696"
                     /db_xref="CDD:119407"
     misc_feature    order(365878..365880,365923..365925,366085..366087,
                     366424..366426)
                     /locus_tag="O3Y_01590"
                     /note="active site"
                     /db_xref="CDD:119407"
     misc_feature    order(365878..365880,365923..365925,366085..366087)
                     /locus_tag="O3Y_01590"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:119407"
     misc_feature    366577..366708
                     /locus_tag="O3Y_01590"
                     /note="Lysine Motif is a small domain involved in binding
                     peptidoglycan; Region: LysM; cd00118"
                     /db_xref="CDD:212030"
     misc_feature    366616..366930
                     /locus_tag="O3Y_01590"
                     /note="FOG: LysM repeat [Cell envelope biogenesis, outer
                     membrane]; Region: LytE; COG1388"
                     /db_xref="CDD:224306"
     misc_feature    366775..366906
                     /locus_tag="O3Y_01590"
                     /note="Lysine Motif is a small domain involved in binding
                     peptidoglycan; Region: LysM; cd00118"
                     /db_xref="CDD:212030"
     misc_feature    366940..367065
                     /locus_tag="O3Y_01590"
                     /note="Lysine Motif is a small domain involved in binding
                     peptidoglycan; Region: LysM; cd00118"
                     /db_xref="CDD:212030"
     gene            367084..369045
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /db_xref="GeneID:11913286"
     CDS             367084..369045
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="COG0323 DNA mismatch repair enzyme (predicted
                     ATPase)"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein"
                     /protein_id="YP_005332194.1"
                     /db_xref="GI:379740225"
                     /db_xref="GeneID:11913286"
                     /translation="MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
                     DLEKGGAKLIRIRDNGSGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASI
                     SSVSRLTLTSRTVAQEEAWSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKF
                     LRTEKTEFTHIDELLKRIALSRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGN
                     PFVQHMLRIELEHQGLKLHGWITTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYE
                     TSLRVDQFATYVLFIELDPHQVDVNVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQ
                     VMAPTINEGAFHLPHCAEEVNPPVVPMIDTTQQERVWQAVQNTPDYPRKAPRDNDRDE
                     SDNPQVRERAVSNPWVASPKTASTGKERYGSASVSKKEAAVYQTLMQTPDLSDEEPST
                     ASTIVSSIEAVKANIAIEKLGKAIQVVAGQYLLMSSPQGCVLISLYQAQQLKLRGLLN
                     AQHGALKAQPLLVPLALKLNESEWQVAQRHSSALLQLGIELKSRTNHSIMVMAVPQPL
                     RQQNLQQLLPDLLSYAASCSESQALSHQALADWLTQRIVVEKRDYTLAEAIGLIAELE
                     QLWQGNLPLQDPHFITLVDFSASITALHS"
     misc_feature    367084..369018
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="DNA mismatch repair protein; Reviewed; Region:
                     mutL; PRK00095"
                     /db_xref="CDD:234630"
     misc_feature    367150..367422
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    order(367168..367170,367180..367182,367189..367191,
                     367249..367251,367255..367257,367261..367263,
                     367267..367272,367369..367380,367411..367413,
                     367417..367419)
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    367180..367182
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    order(367261..367263,367267..367269,367369..367371,
                     367375..367377)
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     misc_feature    367705..368070
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="MutL_Trans_MutL: transducer domain, having a
                     ribosomal S5 domain 2-like fold, found in proteins similar
                     to Escherichia coli MutL.  EcMutL belongs to the DNA
                     mismatch repair (MutL/MLH1/PMS2) family.  This transducer
                     domain is homologous to the second...; Region:
                     MutL_Trans_MutL; cd03482"
                     /db_xref="CDD:239564"
     misc_feature    367999..368001
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:239564"
     misc_feature    368491..368916
                     /gene="mutL"
                     /locus_tag="O3Y_01595"
                     /note="MutL C terminal dimerization domain; Region:
                     MutL_C; pfam08676"
                     /db_xref="CDD:254967"
     gene            369042..369989
                     /gene="miaA"
                     /locus_tag="O3Y_01600"
                     /db_xref="GeneID:11913287"
     CDS             369042..369989
                     /gene="miaA"
                     /locus_tag="O3Y_01600"
                     /EC_number="2.5.1.75"
                     /note="COG0324 tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /protein_id="YP_005332195.1"
                     /db_xref="GI:379740226"
                     /db_xref="GeneID:11913287"
                     /translation="MTQKLPLALFLMGPTASGKTDLAIRLRQKYPVEIISVDSALIYR
                     GMDIGTAKPDAQELALAPHRLIDILDPSEAYSAADFRRDALKEMADIVAQGKIPLLVG
                     GTMLYFKALLEGLSPLPAADPVIRQQIELEAEKLGWQALHDQLQQIDPVSAQRIHPND
                     PQRLSRALEVYRISGKTLTELTQTKGEAIPYRVLQFAIAPKERAELHRRIELRFEKMV
                     ESGFEEEVKALYARDDLHPDLPSIRCVGYRQMWDYLDGHGTLDEAIYRGICATRQLAK
                     RQITWLRSWDDLTWLDSENVDQAVETLSNAIASNEISCV"
     misc_feature    369051..369968
                     /gene="miaA"
                     /locus_tag="O3Y_01600"
                     /note="tRNA delta(2)-isopentenylpyrophosphate transferase;
                     Reviewed; Region: miaA; PRK00091"
                     /db_xref="CDD:234626"
     gene            370161..370424
                     /gene="hfq"
                     /locus_tag="O3Y_01605"
                     /db_xref="GeneID:11913288"
     CDS             370161..370424
                     /gene="hfq"
                     /locus_tag="O3Y_01605"
                     /note="COG1923 Uncharacterized host factor I protein"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein Hfq"
                     /protein_id="YP_005332196.1"
                     /db_xref="GI:379740227"
                     /db_xref="GeneID:11913288"
                     /translation="MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVNQMVYKHAISTVVPARPVSHHSGDRPASDRPAEKSEE"
     misc_feature    370176..370352
                     /gene="hfq"
                     /locus_tag="O3Y_01605"
                     /note="bacterial Hfq-like; Region: Hfq; cd01716"
                     /db_xref="CDD:212463"
     misc_feature    order(370176..370184,370191..370193,370236..370250,
                     370272..370280,370284..370289,370308..370352)
                     /gene="hfq"
                     /locus_tag="O3Y_01605"
                     /note="hexamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212463"
     misc_feature    order(370224..370244,370248..370301)
                     /gene="hfq"
                     /locus_tag="O3Y_01605"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212463"
     misc_feature    order(370233..370235,370245..370259,370296..370298,
                     370314..370316,370338..370343,370347..370349)
                     /gene="hfq"
                     /locus_tag="O3Y_01605"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:212463"
     misc_feature    370311..370346
                     /gene="hfq"
                     /locus_tag="O3Y_01605"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212463"
     gene            370457..371746
                     /locus_tag="O3Y_01610"
                     /db_xref="GeneID:11913289"
     CDS             370457..371746
                     /locus_tag="O3Y_01610"
                     /note="COG2262 GTPases"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="YP_005332197.1"
                     /db_xref="GI:379740228"
                     /db_xref="GeneID:11913289"
                     /translation="MFDRYEAGERAVLVHVNFTQRGEWEDLSECKMLISSAGVTTLHV
                     VTGSRQTPHPKYFVGEGKAQEIAEAVQMHVANVVIFNHALSPAQERNLERLCQCRVID
                     RTGLILDIFAQRARTHEGKLQVELAQLRHISTRLIRGWTHLERQKGGIGLRGPGETQL
                     ETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFNRIT
                     EAGVYAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQETQE
                     ADILLHVVDASDERFRENIQAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDE
                     GVPRVVWISAMQGAGTELLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQ
                     EEYDPEGNLLITVRMQQVDWARLEKREQADLCDFIVT"
     misc_feature    370457..371740
                     /locus_tag="O3Y_01610"
                     /note="GTPase HflX; Provisional; Region: PRK11058"
                     /db_xref="CDD:182934"
     misc_feature    370529..370792
                     /locus_tag="O3Y_01610"
                     /note="GTP-binding GTPase N-terminal; Region: GTP-bdg_N;
                     pfam13167"
                     /db_xref="CDD:205348"
     misc_feature    370925..371539
                     /locus_tag="O3Y_01610"
                     /note="HflX GTPase family; Region: HflX; cd01878"
                     /db_xref="CDD:206666"
     misc_feature    371066..371089
                     /locus_tag="O3Y_01610"
                     /note="G1 box; other site"
                     /db_xref="CDD:206666"
     misc_feature    order(371075..371077,371081..371092,371405..371410,
                     371414..371416,371483..371491)
                     /locus_tag="O3Y_01610"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206666"
     misc_feature    371129..371170
                     /locus_tag="O3Y_01610"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206666"
     misc_feature    371159..371161
                     /locus_tag="O3Y_01610"
                     /note="G2 box; other site"
                     /db_xref="CDD:206666"
     misc_feature    371207..371218
                     /locus_tag="O3Y_01610"
                     /note="G3 box; other site"
                     /db_xref="CDD:206666"
     misc_feature    371216..371287
                     /locus_tag="O3Y_01610"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206666"
     misc_feature    371405..371416
                     /locus_tag="O3Y_01610"
                     /note="G4 box; other site"
                     /db_xref="CDD:206666"
     misc_feature    371483..371491
                     /locus_tag="O3Y_01610"
                     /note="G5 box; other site"
                     /db_xref="CDD:206666"
     gene            371792..372979
                     /locus_tag="O3Y_01615"
                     /db_xref="GeneID:11913290"
     CDS             371792..372979
                     /locus_tag="O3Y_01615"
                     /note="COG0330 Membrane protease subunits,
                     stomatin/prohibitin homologs"
                     /codon_start=1
                     /transl_table=11
                     /product="HflK protein"
                     /protein_id="YP_005332198.1"
                     /db_xref="GI:379740229"
                     /db_xref="GeneID:11913290"
                     /translation="MAWNEPGNNNGNNGRDNDPWGNNNRGNKGGRDQGPPDLDEVFNK
                     LSQKLGGKFGGKGGKGPSFSGGGAIGFGVIAAIAVAVWFFTGFYTIGEAERGVVLRLG
                     KYDRIVDPGLNWRPRFIDEVTPVNVQAIRSLRASGLMLTKDENVVTVSMDVQYRIADP
                     YKYLYRVTNADDSLRQATDSALRAVVGDSLMDSILTSGRQQIRQSTQQTLNQVIDSYD
                     MGLMIVDVNFQSARPPEQVKDAFDDAIAAREDEERFIREAEAYKNEILPKATGRAERL
                     KKEAQGYNERTINEALGQVAQFEKLLPEYQAAPKVTRDRLYLDAMEQVYSNTSKVLID
                     SESSGNLLYLPIDKLAGQDNKTAQPRPNKSSSAYDQIELESQTTETNTDTQSRSTTRQ
                     GRY"
     misc_feature    371792..>371932
                     /locus_tag="O3Y_01615"
                     /note="Bacterial membrane protein N terminal; Region:
                     HflK_N; pfam12221"
                     /db_xref="CDD:256906"
     misc_feature    372008..372784
                     /locus_tag="O3Y_01615"
                     /note="High frequency of lysogenization K (HflK) family;
                     SPFH (stomatin, prohibitin, flotillin, and HflK/C)
                     superfamily; Region: SPFH_HflK; cd03404"
                     /db_xref="CDD:259802"
     misc_feature    372050..372832
                     /locus_tag="O3Y_01615"
                     /note="HflK protein; Region: hflK; TIGR01933"
                     /db_xref="CDD:130988"
     gene            372982..373962
                     /locus_tag="O3Y_01620"
                     /db_xref="GeneID:11913291"
     CDS             372982..373962
                     /locus_tag="O3Y_01620"
                     /note="COG0330 Membrane protease subunits,
                     stomatin/prohibitin homologs"
                     /codon_start=1
                     /transl_table=11
                     /product="HflC protein"
                     /protein_id="YP_005332199.1"
                     /db_xref="GI:379740230"
                     /db_xref="GeneID:11913291"
                     /translation="MRKLLIPSIVLIIAALLMSMFVIPEGERGIVIRFGRVLKDNNDL
                     ARIYEPGLHFKMPLFDRVKTLDARIQTMDGRSDRFVTSEKKDVIIDTYVKWRIEDFGQ
                     YYLATGGGNALTAEALLERKVTDVLRSEIGAREIKQIVSGPRNVAVLPENADSSELTT
                     EAAKEAMEIDGQRDQIMSEVLNDTRESAMKDLGVYVVDFRMKKINLPDEISESIYRRM
                     RAERESVARKHRSQGREKAEVIRAQAELEVATILAEADKTARVTRGTADAEAAKIYSD
                     AYKKDPEFFSFLRSLRAYEKSFNSKNDILVLDPNSEFFQYMNNAKGAAAK"
     misc_feature    372982..373935
                     /locus_tag="O3Y_01620"
                     /note="HflC protein; Region: hflC; TIGR01932"
                     /db_xref="CDD:233644"
     misc_feature    373036..373896
                     /locus_tag="O3Y_01620"
                     /note="High frequency of lysogenization C (HflC) family;
                     SPFH (stomatin, prohibitin, flotillin, and HflK/C)
                     superfamily; Region: SPFH_HflC; cd03405"
                     /db_xref="CDD:259803"
     gene            374023..374211
                     /locus_tag="O3Y_01625"
                     /db_xref="GeneID:11913292"
     CDS             374023..374211
                     /locus_tag="O3Y_01625"
                     /note="COG3242 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332200.1"
                     /db_xref="GI:379740231"
                     /db_xref="GeneID:11913292"
                     /translation="MSQTLWVALGLVLIVEGLGPLFAPRGWRQMVAQLSLQPDNQLRR
                     IGGCLVVAGAVIAYVFAR"
     misc_feature    374023..374208
                     /locus_tag="O3Y_01625"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG3242"
                     /db_xref="CDD:225782"
     gene            complement(374252..374479)
                     /locus_tag="O3Y_01630"
                     /db_xref="GeneID:11913293"
     CDS             complement(374252..374479)
                     /locus_tag="O3Y_01630"
                     /note="COG2900 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332201.1"
                     /db_xref="GI:379740232"
                     /db_xref="GeneID:11913293"
                     /translation="MQEMSLTQLQERIEDLECKLAFQEQTIETLNDALTQQQLLLSKM
                     QDQMKYVVGKVKNMDTSTLADPAHETPPPHY"
     misc_feature    complement(374255..374479)
                     /locus_tag="O3Y_01630"
                     /note="hypothetical protein; Provisional; Region:
                     PRK04406"
                     /db_xref="CDD:235296"
     gene            complement(374482..375465)
                     /locus_tag="O3Y_01635"
                     /db_xref="GeneID:11913294"
     CDS             complement(374482..375465)
                     /locus_tag="O3Y_01635"
                     /note="COG2319 FOG: WD40 repeat"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332202.1"
                     /db_xref="GI:379740233"
                     /db_xref="GeneID:11913294"
                     /translation="MMRRIYHSLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLS
                     RDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQANPVSVIRIADSERFAVTASQNN
                     FAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLA
                     HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLA
                     FTSDGGNQALIWDLTADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNT
                     QDGKKIASFESENKKDHGPTQAVVYDAAFDAQQRAVAGSSAGIAQAWRMEN"
     misc_feature    complement(374497..>375336)
                     /locus_tag="O3Y_01635"
                     /note="FOG: WD40 repeat [General function prediction
                     only]; Region: COG2319"
                     /db_xref="CDD:225201"
     misc_feature    complement(374485..375225)
                     /locus_tag="O3Y_01635"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    complement(order(374494..374499,374527..374529,
                     374602..374607,374641..374646,374662..374664,
                     374674..374676,374731..374736,374773..374778,
                     374794..374796,374809..374811,374860..374862,
                     374896..374901,374917..374919,374932..374934,
                     374983..374988,375019..375024,375040..375042,
                     375052..375054,375109..375114,375145..375150,
                     375163..375165,375175..375177))
                     /locus_tag="O3Y_01635"
                     /note="structural tetrad; other site"
                     /db_xref="CDD:238121"
     gene            375602..376381
                     /locus_tag="O3Y_01640"
                     /db_xref="GeneID:11913295"
     CDS             375602..376381
                     /locus_tag="O3Y_01640"
                     /note="COG0545 FKBP-type peptidyl-prolyl cis-trans
                     isomerases 1"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="YP_005332203.1"
                     /db_xref="GI:379740234"
                     /db_xref="GeneID:11913295"
                     /translation="MKSLFKVSLLAATVMLAVGCQKEEAPKTETTPAAQTAAAKTVEF
                     KSEDDKAAYAIGVSFANYLKTSIEKPSEIGIDLNKDLVLKGIEHVFAGNPEMSEEETR
                     AALEALDKRVAETMQAKAAEKAAENKKKGDEFRAQFEKESGVVKTQSGLLYQVMTPAE
                     GDKPKDTDTVQVHYKGTLIDGSQFDSSYERGEPATFPLNRVIPGWTEGVQLMSVGSKF
                     KLVIPPELAYGEQDTPTIPANSTLVFEVELLKIENGKDAAQ"
     misc_feature    375602..376372
                     /locus_tag="O3Y_01640"
                     /note="FKBP-type peptidyl-prolyl cis-trans isomerase;
                     Provisional; Region: PRK10902"
                     /db_xref="CDD:236791"
     misc_feature    375725..376066
                     /locus_tag="O3Y_01640"
                     /note="Domain amino terminal to FKBP-type peptidyl-prolyl
                     isomerase; Region: FKBP_N; pfam01346"
                     /db_xref="CDD:250550"
     misc_feature    376085..376348
                     /locus_tag="O3Y_01640"
                     /note="FKBP-type peptidyl-prolyl cis-trans isomerase;
                     Region: FKBP_C; pfam00254"
                     /db_xref="CDD:249719"
     gene            376580..377302
                     /locus_tag="O3Y_01645"
                     /db_xref="GeneID:11913296"
     CDS             376580..377302
                     /locus_tag="O3Y_01645"
                     /note="COG2964 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332204.1"
                     /db_xref="GI:379740235"
                     /db_xref="GeneID:11913296"
                     /translation="MTMTETMNVDLLLEMESVHVKPFTEHDKVILRSYEAVVDGIASL
                     IGPFCEIVLHSLEDLNTSAIKIANGENTGRQVGSPITDMALKMLRDIEGSERNFSRSY
                     FTRAKGGVLMKSITVAIRNGENRVIGLLCINVNLDAPFSQVLKSFMPTQEAQEAASSV
                     NFASDVEELVDQTVERTIEEINGDKSVSNNTKNRQIVMALFDKGIFDIKDAINRVADR
                     LNISKHTVYLYIRQRKTEDDEK"
     misc_feature    376640..377293
                     /locus_tag="O3Y_01645"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG2964"
                     /db_xref="CDD:225512"
     misc_feature    376667..377017
                     /locus_tag="O3Y_01645"
                     /note="YheO-like PAS domain; Region: PAS_6; pfam08348"
                     /db_xref="CDD:254749"
     misc_feature    377081..377272
                     /locus_tag="O3Y_01645"
                     /note="HTH domain; Region: HTH_22; pfam13309"
                     /db_xref="CDD:257646"
     gene            377299..377694
                     /locus_tag="O3Y_01650"
                     /db_xref="GeneID:11913297"
     CDS             377299..377694
                     /locus_tag="O3Y_01650"
                     /note="COG1553 Uncharacterized conserved protein involved
                     in intracellular sulfur reduction"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur transfer complex subunit TusD"
                     /protein_id="YP_005332205.1"
                     /db_xref="GI:379740236"
                     /db_xref="GeneID:11913297"
                     /translation="MKPLTYTLVVNGPQYGTQSARNAYLFAKALIEKGHILKSVFFYQ
                     DGVLNGSSTHVPANDEFNLLQGWQSLAQSHQVQLETCVAAALRRGVVSEQEASQHGLA
                     SHNLAAHFTQAGLGSLAQALLEQDRVVQF"
     misc_feature    377308..377691
                     /locus_tag="O3Y_01650"
                     /note="sulfur transfer complex subunit TusD; Validated;
                     Region: PRK00207"
                     /db_xref="CDD:178928"
     gene            377691..378047
                     /locus_tag="O3Y_01655"
                     /db_xref="GeneID:11913298"
     CDS             377691..378047
                     /locus_tag="O3Y_01655"
                     /note="COG2923 Uncharacterized protein involved in the
                     oxidation of intracellular sulfur"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine synthesizing protein C"
                     /protein_id="YP_005332206.1"
                     /db_xref="GI:379740237"
                     /db_xref="GeneID:11913298"
                     /translation="MNKVAWVFHTPPHGSTAGREGLDAILATSAYSEEQALFFVGEGV
                     LQLVNHQHPESILSRDYISAFKLLDLYDIEARYVCQQSLVSWGLSEQDLLIEVEVVDA
                     QALAQLLHHYDQLLTF"
     misc_feature    377697..378044
                     /locus_tag="O3Y_01655"
                     /note="sulfur relay protein TusC/DsrF; Region:
                     sulf_tusC_dsrF; TIGR03010"
                     /db_xref="CDD:200229"
     gene            378057..378332
                     /locus_tag="O3Y_01660"
                     /db_xref="GeneID:11913299"
     CDS             378057..378332
                     /locus_tag="O3Y_01660"
                     /note="COG2168 Uncharacterized conserved protein involved
                     in oxidation of intracellular sulfur"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine synthesizing protein B"
                     /protein_id="YP_005332207.1"
                     /db_xref="GI:379740238"
                     /db_xref="GeneID:11913299"
                     /translation="MLHIVKHLEKLPLLSAYLLDGDVVLLTENAVYAAAVHSPYQASI
                     NDQNLWLVLYEDLHARGWLEKCDPRISVVTMSDFVDLTVTHDKSITW"
     misc_feature    378057..378329
                     /locus_tag="O3Y_01660"
                     /note="Uncharacterized conserved protein involved in
                     oxidation of intracellular sulfur [Inorganic ion transport
                     and metabolism]; Region: DsrH; COG2168"
                     /db_xref="CDD:225079"
     gene            378517..378891
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /db_xref="GeneID:11913300"
     CDS             378517..378891
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /note="COG0048 Ribosomal protein S12"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="YP_005332208.1"
                     /db_xref="GI:379740239"
                     /db_xref="GeneID:11913300"
                     /translation="MATINQLVRKPRAKQVVKSNVPALAACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVNDRKQARSKYGVKRPKS"
     misc_feature    378523..378846
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /note="S12-like family, 30S ribosomal protein S12
                     subfamily; S12 is located at the interface of the large
                     and small ribosomal subunits of prokaryotes, chloroplasts
                     and mitochondria, where it plays an important role in both
                     tRNA and ribosomal subunit...; Region: Ribosomal_S12;
                     cd03368"
                     /db_xref="CDD:239466"
     misc_feature    order(378526..378531,378535..378540,378547..378552)
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /note="S17 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:239466"
     misc_feature    378526..378528
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /note="S8 interaction site; other site"
                     /db_xref="CDD:239466"
     misc_feature    order(378550..378558,378592..378594,378598..378603,
                     378607..378609,378652..378657,378661..378669,
                     378688..378690,378712..378714,378721..378726,
                     378763..378768,378778..378783,378844..378846)
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /note="16S rRNA interaction site [nucleotide binding];
                     other site"
                     /db_xref="CDD:239466"
     misc_feature    order(378643..378648,378778..378780)
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /note="streptomycin interaction site [chemical binding];
                     other site"
                     /db_xref="CDD:239466"
     misc_feature    378646..378651
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /note="23S rRNA interaction site [nucleotide binding];
                     other site"
                     /db_xref="CDD:239466"
     misc_feature    order(378649..378666,378724..378750)
                     /gene="rpsL"
                     /locus_tag="O3Y_01665"
                     /note="aminoacyl-tRNA interaction site (A-site)
                     [nucleotide binding]; other site"
                     /db_xref="CDD:239466"
     gene            379007..379477
                     /locus_tag="O3Y_01670"
                     /db_xref="GeneID:11913301"
     CDS             379007..379477
                     /locus_tag="O3Y_01670"
                     /note="COG0049 Ribosomal protein S7"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="YP_005332209.1"
                     /db_xref="GI:379740240"
                     /db_xref="GeneID:11913301"
                     /translation="MPRRRVIGQRKILPDPKFKSELLAKFVNILMVDGKKSTAEKIVY
                     TALDTMAEKSGKDHLAVFEEALENVRPAVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
                     WLVEAARKRGEKSMAARLAAEMLDAAENKGSAVKKREDVHRMAEANKAFAHYRW"
     misc_feature    379040..379453
                     /locus_tag="O3Y_01670"
                     /note="Bacterial homolog of Ribosomal Protein S7; Region:
                     uS7_Bacteria; cd14869"
                     /db_xref="CDD:271248"
     misc_feature    order(379088..379096,379106..379120,379127..379132,
                     379232..379234,379247..379249,379259..379261,
                     379286..379291,379298..379300,379310..379312,
                     379331..379333,379349..379354,379361..379363)
                     /locus_tag="O3Y_01670"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:271248"
     misc_feature    order(379115..379117,379124..379129,379136..379138)
                     /locus_tag="O3Y_01670"
                     /note="S9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271248"
     misc_feature    379451..379453
                     /locus_tag="O3Y_01670"
                     /note="S11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271248"
     gene            379553..381649
                     /locus_tag="O3Y_01675"
                     /db_xref="GeneID:11913302"
     CDS             379553..381649
                     /locus_tag="O3Y_01675"
                     /note="COG0480 Translation elongation factors (GTPases)"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="YP_005332210.1"
                     /db_xref="GI:379740241"
                     /db_xref="GeneID:11913302"
                     /translation="MARKTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVH
                     DGAATMDWMVQEQERGITITSAATTTFWRGMEAQFQEHRINIIDTPGHVDFTIEVERS
                     LRVLDGAVVVFCGTSGVEPQSETVWRQADKYGVPRMVFVNKMDRAGADFLRVVGQIKH
                     RLGANPVPIQLNIGAEEEFKGVIDLIKMKAINWNEADQGMSFTYEEIPADMLELAQEW
                     RNHLVEAAAEASEELMEKYLEDGELSEVEIKQALRQRTINNEIVLAACGSAFKNKGVQ
                     AVLDAVIEFLPSPTDVPAIKGIDDRENSVERHADDNEPFSSLAFKIATDPFVGSLTFI
                     RVYSGVVNSGDAVYNSVKQKKERFGRIVQMHANKRDEIKEIRAGDIAAAIGLKDVTTG
                     DTLCDPNHVVILERMEFPEPVIQIAVEPRSKADQEKMGIALGKLAAEDPSFRVETDAE
                     TGQTLISGMGELHLDIIVDRMKREFGVDCNVGKPQVAYRETIRGKSEVEGKFVRQSGG
                     RGQYGHVWLKIEPAEPGQGFVFVDAIAGGVIPKEFINPVAKGIEEQMNNGVLAGYPVL
                     DVKATLFDGSFHDVDSSEMAFKIAGSMAFKKGALEAQPVLLEPLMKVEITTPEDWMGD
                     VVGDLNRRRGIIEGMDEGPAGLKIIHAKVPLSEMFGYATDLRSATQGRASYSMEFAEY
                     ADVPKNIADAIIAEHG"
     misc_feature    379553..381640
                     /locus_tag="O3Y_01675"
                     /note="elongation factor G; Reviewed; Region: PRK00007"
                     /db_xref="CDD:234569"
     misc_feature    379586..380419
                     /locus_tag="O3Y_01675"
                     /note="Elongation factor G (EF-G) family involved in both
                     the elongation and ribosome recycling phases of protein
                     synthesis; Region: EF-G; cd01886"
                     /db_xref="CDD:206673"
     misc_feature    379601..379624
                     /locus_tag="O3Y_01675"
                     /note="G1 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    order(379604..379606,379610..379612,379622..379627,
                     379634..379636,379643..379648,379748..379753,
                     379826..379831,379898..379903,380009..380011,
                     380021..380023)
                     /locus_tag="O3Y_01675"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206673"
     misc_feature    order(379610..379612,379616..379627,379976..379981,
                     379985..379987,380354..380362)
                     /locus_tag="O3Y_01675"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206673"
     misc_feature    379691..379750
                     /locus_tag="O3Y_01675"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206673"
     misc_feature    379736..379738
                     /locus_tag="O3Y_01675"
                     /note="G2 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    379814..379825
                     /locus_tag="O3Y_01675"
                     /note="G3 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    379820..379876
                     /locus_tag="O3Y_01675"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206673"
     misc_feature    379976..379987
                     /locus_tag="O3Y_01675"
                     /note="G4 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    380354..380362
                     /locus_tag="O3Y_01675"
                     /note="G5 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    380495..380743
                     /locus_tag="O3Y_01675"
                     /note="EFG_mtEFG_II: this subfamily represents the domain
                     II of elongation factor G (EF-G) in bacteria and, the
                     C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
                     and G2 (mtEFG2)_like proteins found in eukaryotes. During
                     the process of peptide synthesis...; Region: EFG_mtEFG_II;
                     cd04088"
                     /db_xref="CDD:239755"
     misc_feature    380777..380998
                     /locus_tag="O3Y_01675"
                     /note="Elongation Factor G, domain II; Region: EFG_II;
                     pfam14492"
                     /db_xref="CDD:258632"
     misc_feature    381014..381361
                     /locus_tag="O3Y_01675"
                     /note="EFG_mtEFG1_IV: domains similar to domain IV of the
                     bacterial translational elongation factor (EF) EF-G.
                     Included in this group is a domain of mitochondrial
                     Elongation factor G1 (mtEFG1) proteins homologous to
                     domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
                     EFG_mtEFG1_IV; cd01434"
                     /db_xref="CDD:238715"
     misc_feature    381374..381610
                     /locus_tag="O3Y_01675"
                     /note="EFG_mtEFG_C: domains similar to the C-terminal
                     domain of the bacterial translational elongation factor
                     (EF) EF-G.  Included in this group is the C-terminus of
                     mitochondrial Elongation factor G1 (mtEFG1) and G2
                     (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
                     EFG_mtEFG_C; cd03713"
                     /db_xref="CDD:239683"
     gene            381772..382956
                     /locus_tag="O3Y_01680"
                     /db_xref="GeneID:11913303"
     CDS             381772..382956
                     /locus_tag="O3Y_01680"
                     /note="COG0050 GTPases - translation elongation factors"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="YP_005332211.1"
                     /db_xref="GI:379740242"
                     /db_xref="GeneID:11913303"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGGKA
                     RDFASIDNAPEERERGITINTSHVEYDTPNRHYAHVDCPGHADYVKNMITGAAQMDGG
                     ILVVAATDGPMPQTREHILLGRQVGIPYIIVFMNKCDMVDDEELLELVEMEVRELLSE
                     YDFPGDDLPVIQGSALGALNGEAQWEAKIVELAEALDTYIPEPERAVDMAFLMPIEDV
                     FSIQGRGTVVTGRIERGILKVGDEVAIVGIKETVKTTCTGVEMFRKLLDEGRAGENVG
                     ALLRGTKREEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFR
                     TTDVTGSIELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKI
                     IA"
     misc_feature    381772..382953
                     /locus_tag="O3Y_01680"
                     /note="elongation factor Tu; Reviewed; Region: PRK00049"
                     /db_xref="CDD:234596"
     misc_feature    381802..382380
                     /locus_tag="O3Y_01680"
                     /note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
                     Region: EF_Tu; cd01884"
                     /db_xref="CDD:206671"
     misc_feature    381826..381849
                     /locus_tag="O3Y_01680"
                     /note="G1 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    order(381829..381831,381835..381837,381847..381852,
                     381859..381861,381868..381873,381883..381885,
                     381967..381972,382024..382029,382096..382101,
                     382105..382116,382123..382125,382216..382218,
                     382228..382230,382306..382311)
                     /locus_tag="O3Y_01680"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    order(381835..381852,381910..381912,382177..382182,
                     382186..382188,382291..382299)
                     /locus_tag="O3Y_01680"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    381937..381969
                     /locus_tag="O3Y_01680"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206671"
     misc_feature    381955..381957
                     /locus_tag="O3Y_01680"
                     /note="G2 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    382012..382023
                     /locus_tag="O3Y_01680"
                     /note="G3 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    382018..382074
                     /locus_tag="O3Y_01680"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206671"
     misc_feature    382177..382188
                     /locus_tag="O3Y_01680"
                     /note="G4 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    382291..382299
                     /locus_tag="O3Y_01680"
                     /note="G5 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    382402..382662
                     /locus_tag="O3Y_01680"
                     /note="EFTU_II: Elongation factor Tu domain II. Elongation
                     factors Tu (EF-Tu) are three-domain GTPases with an
                     essential function in the elongation phase of mRNA
                     translation. The GTPase center of EF-Tu is in the
                     N-terminal domain (domain I), also known as the...;
                     Region: EFTU_II; cd03697"
                     /db_xref="CDD:239668"
     misc_feature    382669..382938
                     /locus_tag="O3Y_01680"
                     /note="Domain III of elongation factor (EF) Tu. Ef-Tu
                     consists of three structural domains, designated I, II and
                     III. Domain III adopts a beta barrel structure. Domain III
                     is involved in binding to both charged tRNA and binding to
                     elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
                     /db_xref="CDD:239678"
     misc_feature    order(382705..382707,382711..382719,382771..382773,
                     382891..382899,382927..382929)
                     /locus_tag="O3Y_01680"
                     /note="Antibiotic Binding Site [chemical binding]; other
                     site"
                     /db_xref="CDD:239678"
     gene            383259..383447
                     /locus_tag="O3Y_01685"
                     /db_xref="GeneID:11913304"
     CDS             383259..383447
                     /locus_tag="O3Y_01685"
                     /note="COG2906 Bacterioferritin-associated ferredoxin"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="YP_005332212.1"
                     /db_xref="GI:379740243"
                     /db_xref="GeneID:11913304"
                     /translation="MYVCLCHGVSDKKIRRLVAEQGITDIKGIKRCTALGSQCGKCVR
                     QAKEIIEESLIAQFKLAS"
     misc_feature    383259..383444
                     /locus_tag="O3Y_01685"
                     /note="Bacterioferritin-associated ferredoxin [Inorganic
                     ion transport and metabolism]; Region: Bfd; COG2906"
                     /db_xref="CDD:225458"
     gene            383517..383993
                     /locus_tag="O3Y_01690"
                     /db_xref="GeneID:11913305"
     CDS             383517..383993
                     /locus_tag="O3Y_01690"
                     /note="COG2193 Bacterioferritin (cytochrome b1)"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="YP_005332213.1"
                     /db_xref="GI:379740244"
                     /db_xref="GeneID:11913305"
                     /translation="MKGDPVIIQHLNKVLANELIAINQYFLHARMYKDWGLKHLADKE
                     YHESIDEMKHADHIVERILFLEGIPNLQDLGKLMIGEDVQEMLECDLKLELIAIPDLK
                     EAIAYAEKVRDYVSRDLFQEILEDEEEHVDWLETQLGLIDMTGIQNYLQAQFVDDE"
     misc_feature    383520..383975
                     /locus_tag="O3Y_01690"
                     /note="Bacterioferritin, ferritin-like diiron-binding
                     domain; Region: Bacterioferritin; cd00907"
                     /db_xref="CDD:153099"
     misc_feature    383538..383945
                     /locus_tag="O3Y_01690"
                     /note="Ferritin-like domain; Region: Ferritin; pfam00210"
                     /db_xref="CDD:249681"
     misc_feature    order(383559..383561,383583..383585,383604..383606,
                     383649..383651,383670..383672,383682..383684)
                     /locus_tag="O3Y_01690"
                     /note="heme binding site [chemical binding]; other site"
                     /db_xref="CDD:153099"
     misc_feature    order(383565..383570,383574..383579,383589..383591,
                     383667..383669,383676..383678,383793..383798,
                     383805..383807,383817..383819,383892..383897)
                     /locus_tag="O3Y_01690"
                     /note="ferroxidase pore; other site"
                     /db_xref="CDD:153099"
     misc_feature    order(383568..383570,383589..383591,383667..383669,
                     383676..383678,383796..383798,383817..383819,
                     383895..383897,383904..383906)
                     /locus_tag="O3Y_01690"
                     /note="ferroxidase diiron center [ion binding]; other
                     site"
                     /db_xref="CDD:153099"
     gene            384205..384573
                     /gene="rpsF"
                     /locus_tag="O3Y_01695"
                     /db_xref="GeneID:11913306"
     CDS             384205..384573
                     /gene="rpsF"
                     /locus_tag="O3Y_01695"
                     /note="COG0360 Ribosomal protein S6"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="YP_005332214.1"
                     /db_xref="GI:379740245"
                     /db_xref="GeneID:11913306"
                     /translation="MRHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITEPSIM
                     LKAREERVKRDEMKFDADVE"
     misc_feature    384205..384525
                     /gene="rpsF"
                     /locus_tag="O3Y_01695"
                     /note="30S ribosomal protein S6; Reviewed; Region: rpsF;
                     PRK00453"
                     /db_xref="CDD:179034"
     gene            384581..384883
                     /locus_tag="O3Y_01700"
                     /db_xref="GeneID:11913307"
     CDS             384581..384883
                     /locus_tag="O3Y_01700"
                     /note="COG2965 Primosomal replication protein N"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="YP_005332215.1"
                     /db_xref="GI:379740246"
                     /db_xref="GeneID:11913307"
                     /translation="MTNRIELSGVVAKALVRSQSPSGVKHCHFWLEHRSTMVEADLPR
                     QVFCRLPVVVSGARSEALTQNLVQGSSILVSGFLAYQTSRNGVGKLVLHADKISQI"
     misc_feature    384581..384880
                     /locus_tag="O3Y_01700"
                     /note="primosomal replication protein N; Provisional;
                     Region: PRK02801"
                     /db_xref="CDD:235071"
     misc_feature    order(384596..384598,384791..384793,384797..384799,
                     384803..384805)
                     /locus_tag="O3Y_01700"
                     /note="generic binding surface II; other site"
                     /db_xref="CDD:239601"
     misc_feature    order(384611..384619,384662..384673,384677..384679,
                     384731..384739,384743..384745,384788..384790,
                     384809..384817,384851..384859)
                     /locus_tag="O3Y_01700"
                     /note="generic binding surface I; other site"
                     /db_xref="CDD:239601"
     gene            384899..385126
                     /gene="rpsR"
                     /locus_tag="O3Y_01705"
                     /db_xref="GeneID:11913308"
     CDS             384899..385126
                     /gene="rpsR"
                     /locus_tag="O3Y_01705"
                     /note="COG0238 Ribosomal protein S18"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="YP_005332216.1"
                     /db_xref="GI:379740247"
                     /db_xref="GeneID:11913308"
                     /translation="MARFFRRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRI
                     TGTSAKYQRQLARAIKRARYLALLPYTDKHQ"
     misc_feature    <384938..385117
                     /gene="rpsR"
                     /locus_tag="O3Y_01705"
                     /note="30S ribosomal protein S18; Reviewed; Region: rpsR;
                     PRK00391"
                     /db_xref="CDD:178997"
     gene            385160..385609
                     /gene="rplI"
                     /locus_tag="O3Y_01710"
                     /db_xref="GeneID:11913309"
     CDS             385160..385609
                     /gene="rplI"
                     /locus_tag="O3Y_01710"
                     /note="COG0359 Ribosomal protein L9"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="YP_005332217.1"
                     /db_xref="GI:379740248"
                     /db_xref="GeneID:11913309"
                     /translation="MQVILLDKIGNLGSLGDTVNVKSGYARNFLIPQGKAVMATKANV
                     AMFESRRAELEAKVAEQLAAAQTRADQVNALEAVVIASKAGDEGKLFGSIGTRDIADA
                     ITAAGVKVSKSEVRLPEGALRNVGAYEVSVQLHSEVFATAKVQVVAE"
     misc_feature    385160..385606
                     /gene="rplI"
                     /locus_tag="O3Y_01710"
                     /note="50S ribosomal protein L9; Reviewed; Region: rplI;
                     PRK00137"
                     /db_xref="CDD:234659"
     misc_feature    385160..385303
                     /gene="rplI"
                     /locus_tag="O3Y_01710"
                     /note="Ribosomal protein L9, N-terminal domain; Region:
                     Ribosomal_L9_N; pfam01281"
                     /db_xref="CDD:250502"
     misc_feature    385343..385606
                     /gene="rplI"
                     /locus_tag="O3Y_01710"
                     /note="Ribosomal protein L9, C-terminal domain; Region:
                     Ribosomal_L9_C; pfam03948"
                     /db_xref="CDD:252268"
     gene            complement(385671..386435)
                     /locus_tag="O3Y_01715"
                     /db_xref="GeneID:11913310"
     CDS             complement(385671..386435)
                     /locus_tag="O3Y_01715"
                     /note="COG3137 Putative salt-induced outer membrane
                     protein"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein"
                     /protein_id="YP_005332218.1"
                     /db_xref="GI:379740249"
                     /db_xref="GeneID:11913310"
                     /translation="MSTKWLLGISLMLSTVAQANENSNQDTDISIPSPWKHQVEFGYQ
                     AHSGNTESESLNSRLKSEYTMGRHRTYGEWKFYKLDKNGKEDKRQSTFAFQSDYKLGP
                     KTYLYGSFYGTNSRYTAYFKDHTLSGGLGYQFAYTDEMVLELELGPGFRYQKPNLDEI
                     DDDDIVFPDLVQEAIFRSNLKAEWQALNNLRFEAEMTMVSGRSNTSLDSNISLTNDIT
                     DHIALKIRQSRQYHNRMPEGLSKADSVISVNLLFEF"
     misc_feature    complement(385674..386432)
                     /locus_tag="O3Y_01715"
                     /note="Putative salt-induced outer membrane protein [Cell
                     envelope biogenesis, outer membrane]; Region: COG3137"
                     /db_xref="CDD:225679"
     gene            386606..388012
                     /locus_tag="O3Y_01720"
                     /db_xref="GeneID:11913311"
     CDS             386606..388012
                     /locus_tag="O3Y_01720"
                     /note="COG0305 Replicative DNA helicase"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="YP_005332219.1"
                     /db_xref="GI:379740250"
                     /db_xref="GeneID:11913311"
                     /translation="MADPRTDNRNRKIPDAQVDAIKVPPHSLEAEQSVIGGLLLDNER
                     WDTVSEHVMTQDFYSRPHRLIFDGVKSILEAGKPLDLITLSEYLEQREQLEDVGGFAY
                     LADLAKNTPSAANINAYAEIVAERALVRNLIGVANEIADAGYDPQGRNAEDLLDLAES
                     KVFAIAEARTSENEGPKNVDSILERTLERIELLYKTPQDGVTGVNTGFTDLNKKTAGL
                     QGSDLIIVAARPSMGKTTFAMNLCENAAMEQDKPVLIFSLEMPAEQIMMRMLASLSRV
                     DQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGL
                     SLIMVDYLQLMRVPALTDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADK
                     RPVNSDLRESGSIEQDADLIMFIYRDEVYHPDSPLKGTAEIIIGKQRNGPIGSVRLTF
                     QGHYSRFDNYAGPAFDDE"
     misc_feature    386618..388009
                     /locus_tag="O3Y_01720"
                     /note="replicative DNA helicase; Provisional; Region:
                     PRK08840"
                     /db_xref="CDD:181562"
     misc_feature    386672..386980
                     /locus_tag="O3Y_01720"
                     /note="DnaB-like helicase N terminal domain; Region: DnaB;
                     pfam00772"
                     /db_xref="CDD:250122"
     misc_feature    387230..387961
                     /locus_tag="O3Y_01720"
                     /note="DnaB helicase C terminal domain. The hexameric
                     helicase DnaB unwinds the DNA duplex at the  chromosome
                     replication fork. Although the mechanism by which DnaB
                     both couples ATP hydrolysis to translocation along DNA and
                     denatures the duplex is unknown, a...; Region: DnaB_C;
                     cd00984"
                     /db_xref="CDD:238484"
     misc_feature    387290..387310
                     /locus_tag="O3Y_01720"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:238484"
     misc_feature    order(387305..387310,387623..387625,387746..387748,
                     387854..387856,387920..387922,387953..387955)
                     /locus_tag="O3Y_01720"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238484"
     misc_feature    387614..387625
                     /locus_tag="O3Y_01720"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:238484"
     misc_feature    order(387638..387643,387662..387670,387743..387769,
                     387851..387856,387890..387895)
                     /locus_tag="O3Y_01720"
                     /note="DNA binding loops [nucleotide binding]"
                     /db_xref="CDD:238484"
     gene            388026..389111
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /db_xref="GeneID:11913312"
     CDS             388026..389111
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /EC_number="5.1.1.1"
                     /note="COG0787 Alanine racemase"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="YP_005332220.1"
                     /db_xref="GI:379740251"
                     /db_xref="GeneID:11913312"
                     /translation="MKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRH
                     IARHALGADAFGVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCE
                     EQLQALEQAQLETPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHF
                     GCADELDKSTTVEQTELFLSLTQGCQGERSLAASAGLLAWPQSQLEWVRPGIIMYGVS
                     PFVEKSAVQLGYQPVMTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDG
                     YPRTAPNGTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVA
                     AHIGTIGYELVTKLTSRVEMSYYGAGV"
     misc_feature    388026..389093
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /note="alanine racemase; Reviewed; Region: alr; PRK00053"
                     /db_xref="CDD:234600"
     misc_feature    388032..389093
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzymes, Proteobacterial Alanine Racemases; Region:
                     PLPDE_III_AR_proteobact; cd06827"
                     /db_xref="CDD:143500"
     misc_feature    order(388119..388121,388125..388127,388137..388139,
                     388257..388259,388389..388391,388410..388412,
                     388494..388496,388500..388502,388602..388610,
                     388650..388661,389049..389051)
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /note="active site"
                     /db_xref="CDD:143500"
     misc_feature    order(388119..388121,388125..388127,388137..388139,
                     388257..388259,388500..388502,388602..388607,
                     388650..388652,388656..388661,389049..389051)
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143500"
     misc_feature    order(388125..388127,388137..388139,388410..388412,
                     388500..388502,389049..389051)
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143500"
     misc_feature    order(388125..388127,388785..388787)
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143500"
     misc_feature    order(388746..388748,388755..388757,388773..388778,
                     388782..388790,388827..388829,388842..388844,
                     388860..388862,388926..388928,388932..388934,
                     389043..389045,389049..389054,389067..389069,
                     389076..389078)
                     /gene="alr"
                     /locus_tag="O3Y_01725"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143500"
     gene            complement(389194..389613)
                     /locus_tag="O3Y_01730"
                     /db_xref="GeneID:11913313"
     CDS             complement(389194..389613)
                     /locus_tag="O3Y_01730"
                     /note="COG0432 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332221.1"
                     /db_xref="GI:379740252"
                     /db_xref="GeneID:11913313"
                     /translation="MWHQHTIQLRPRARGFHLITDEIEQQLPQIKRLNVGLLHLFVQH
                     TSASLTINENADPTVRQDMEAHFNHAAPEGAPYYRHIDEGDDDMPAHIKSSLLGCSVS
                     IPIQQGRLALGTWQGIYLGEHRNHGGIRRVIATIQGE"
     misc_feature    complement(389200..389613)
                     /locus_tag="O3Y_01730"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG0432"
                     /db_xref="CDD:223509"
     gene            389901..391550
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /db_xref="GeneID:11913314"
     CDS             389901..391550
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /EC_number="5.3.1.9"
                     /note="COG0166 Glucose-6-phosphate isomerase"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="YP_005332222.1"
                     /db_xref="GI:379740253"
                     /db_xref="GeneID:11913314"
                     /translation="MKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSAR
                     FGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALR
                     NRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDL
                     GPYMVTEALVPYKNHLTMHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTN
                     AHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSA
                     IGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEA
                     ILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLI
                     HQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKS
                     AAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQW
                     GVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA"
     misc_feature    389904..391547
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /note="glucose-6-phosphate isomerase; Reviewed; Region:
                     pgi; PRK00179"
                     /db_xref="CDD:234679"
     misc_feature    390261..390749
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /note="Phosphoglucose isomerase (PGI) contains two SIS
                     (Sugar ISomerase) domains. This classification is based on
                     the alignment of the first SIS domain. PGI is a
                     multifunctional enzyme which as an intracellular dimer
                     catalyzes the reversible isomerization of...; Region:
                     SIS_PGI_1; cd05015"
                     /db_xref="CDD:240146"
     misc_feature    order(390363..390365,390369..390374,390519..390527,
                     390534..390536,390705..390707)
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /note="active site"
                     /db_xref="CDD:240146"
     misc_feature    order(390444..390455,390540..390542,390552..390554,
                     390561..390563)
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:240146"
     misc_feature    390891..391460
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /note="Phosphoglucose isomerase (PGI) contains two SIS
                     (Sugar ISomerase) domains. This classification is based on
                     the alignment of the second SIS domain. PGI is a
                     multifunctional enzyme which as an intracellular dimer
                     catalyzes the reversible isomerization of...; Region:
                     SIS_PGI_2; cd05016"
                     /db_xref="CDD:240147"
     misc_feature    order(390891..390893,390915..390917,390951..390953,
                     390963..390965,390972..390977,391035..391037,
                     391041..391049,391056..391061,391068..391073,
                     391080..391082,391146..391148,391152..391154,
                     391176..391178,391185..391187)
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:240147"
     misc_feature    order(390951..390953,390963..390965)
                     /gene="pgi"
                     /locus_tag="O3Y_01735"
                     /note="active site"
                     /db_xref="CDD:240147"
     gene            391753..392931
                     /locus_tag="O3Y_01740"
                     /db_xref="GeneID:11913315"
     CDS             391753..392931
                     /locus_tag="O3Y_01740"
                     /note="COG2220 Predicted Zn-dependent hydrolases of the
                     beta-lactamase fold"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein"
                     /protein_id="YP_005332223.1"
                     /db_xref="GI:379740254"
                     /db_xref="GeneID:11913315"
                     /translation="MSETAIQTKTQARQRKVFAHHHVQHYRSQLERRISHSPQFREGK
                     VINAMPHITATPSWWQTAWSYFGGRAQLKPNAQLPVAPLNLQALQTRSKALRVTWLGH
                     SSLFIEVDGLRVLTDPVFDYASPWIAKAWFARNLPNSGVREQLPLPDVIVISHDHYDH
                     LEQASVVYYAAHSVTFYVPLGVGQHLIRWGVSPERIIEFDWWEQIKREGVEFICTPAN
                     HNSGRYYLDHNATLWCSWVIKGHQETLYFSGDSAYDTHFAKIAERCGPIDLACLEVAA
                     DVKQHQGYPVENWGHMQAKHTVQAFRDLQAKKLLPIHWATYELFTHQWDEPIADLVKH
                     CQEQSITLLTPMAGESLTMANHSASHAWWQGLETEPMSGARYWQMGLACSLLLLLMVV
                     "
     misc_feature    392035..392832
                     /locus_tag="O3Y_01740"
                     /note="Predicted Zn-dependent hydrolases of the
                     beta-lactamase fold [General function prediction only];
                     Region: COG2220"
                     /db_xref="CDD:225130"
     gene            complement(393048..393509)
                     /locus_tag="O3Y_01745"
                     /db_xref="GeneID:11913316"
     CDS             complement(393048..393509)
                     /locus_tag="O3Y_01745"
                     /note="COG1406 Predicted inhibitor of MCP methylation,
                     homolog of CheC"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="YP_005332224.1"
                     /db_xref="GI:379740255"
                     /db_xref="GeneID:11913316"
                     /translation="MRAEFVNPFLASLMNVLKTMASLELKPQKPRIKKDEIARGDVSG
                     LIGMIGPTTRGSMSITFDESLALEIMQNMLGERPNGLNEEVTDMVGEITNMVTGGAKR
                     ILAESGFDFDMATPVVVSGRGHTIRHKCEGAIILMPFSSPWGNAFIEICFE"
     misc_feature    complement(393051..393509)
                     /locus_tag="O3Y_01745"
                     /note="Predicted inhibitor of MCP methylation, homolog of
                     CheC [Cell motility and secretion]; Region: COG1406"
                     /db_xref="CDD:224324"
     misc_feature    complement(393090..393386)
                     /locus_tag="O3Y_01745"
                     /note="Chemotaxis phosphatase CheX; Region: CheX;
                     pfam13690"
                     /db_xref="CDD:257993"
     gene            complement(393519..393983)
                     /locus_tag="O3Y_01750"
                     /db_xref="GeneID:11913317"
     CDS             complement(393519..393983)
                     /locus_tag="O3Y_01750"
                     /note="COG0735 Fe2+/Zn2+ uptake regulation proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc uptake regulation protein"
                     /protein_id="YP_005332225.1"
                     /db_xref="GI:379740256"
                     /db_xref="GeneID:11913317"
                     /translation="MVMVLDNKLTKQIEEICAARGVRLTSQRKTVFELICASKRSSSA
                     YELLEDLKKSEPQAKPPTVYRALDFLLEQGFIHRVESTNSFISCCSCNAHKHFSHLLI
                     CDQCGNVIESRDDSLVALLASNAEKHGFTISNHVIESHGVCQTCLSKEKKQQ"
     misc_feature    complement(393555..393905)
                     /locus_tag="O3Y_01750"
                     /note="Ferric uptake regulator(Fur) and related
                     metalloregulatory proteins; typically iron-dependent,
                     DNA-binding repressors and activators; Region: Fur_like;
                     cd07153"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(393651..393653,393684..393686,
                     393696..393698,393717..393719,393861..393863))
                     /locus_tag="O3Y_01750"
                     /note="metal binding site 2 [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:133478"
     misc_feature    complement(393765..393809)
                     /locus_tag="O3Y_01750"
                     /note="putative DNA binding helix; other site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(393579..393581,393630..393632,
                     393687..393689,393699..393701))
                     /locus_tag="O3Y_01750"
                     /note="metal binding site 1 [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(393558..393584,393588..393596,
                     393621..393626,393672..393680))
                     /locus_tag="O3Y_01750"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:133478"
     misc_feature    complement(order(393555..393557,393666..393668,
                     393675..393677))
                     /locus_tag="O3Y_01750"
                     /note="structural Zn2+ binding site [ion binding]; other
                     site"
                     /db_xref="CDD:133478"
     gene            394341..395324
                     /locus_tag="O3Y_01755"
                     /db_xref="GeneID:11913318"
     CDS             394341..395324
                     /locus_tag="O3Y_01755"
                     /note="COG0042 tRNA-dihydrouridine synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase A"
                     /protein_id="YP_005332226.1"
                     /db_xref="GI:379740257"
                     /db_xref="GeneID:11913318"
                     /translation="MTHSCRLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAII
                     HGRGDFLAYNQEEHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGR
                     FGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCE
                     QFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHL
                     QHLDGVMIGREAYQNPYLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERELSQGTHLG
                     HMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIPYQELGV"
     misc_feature    394356..395075
                     /locus_tag="O3Y_01755"
                     /note="Dihydrouridine synthase-like (DUS-like) FMN-binding
                     domain. Members of this family catalyze the reduction of
                     the 5,6-double bond of a uridine residue on tRNA.
                     Dihydrouridine modification of tRNA is widely observed in
                     prokaryotes and eukaryotes, and also...; Region:
                     DUS_like_FMN; cd02801"
                     /db_xref="CDD:239200"
     misc_feature    394362..395300
                     /locus_tag="O3Y_01755"
                     /note="Dihydrouridine synthase (Dus); Region: Dus;
                     pfam01207"
                     /db_xref="CDD:250444"
     misc_feature    order(394368..394376,394449..394451,394527..394529,
                     394608..394610,394734..394736,394833..394835,
                     394953..394955,394959..394961,395019..395024)
                     /locus_tag="O3Y_01755"
                     /note="FMN binding site [chemical binding]; other site"
                     /db_xref="CDD:239200"
     misc_feature    order(394527..394529,394617..394622,394734..394736,
                     394740..394742,394830..394835,394839..394844,
                     394956..394961,395022..395024)
                     /locus_tag="O3Y_01755"
                     /note="active site"
                     /db_xref="CDD:239200"
     misc_feature    order(394617..394619,394740..394742,394833..394835,
                     394839..394841)
                     /locus_tag="O3Y_01755"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239200"
     misc_feature    order(394620..394622,394734..394736,394830..394832,
                     394842..394844,394956..394961)
                     /locus_tag="O3Y_01755"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239200"
     gene            395488..395697
                     /gene="pspG"
                     /locus_tag="O3Y_01760"
                     /db_xref="GeneID:11913319"
     CDS             395488..395697
                     /gene="pspG"
                     /locus_tag="O3Y_01760"
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein G"
                     /protein_id="YP_005332227.1"
                     /db_xref="GI:379740258"
                     /db_xref="GeneID:11913319"
                     /translation="MFELIFIFVFAATLLVTGITLMSVFGAMALAFLIMALFGMLGIV
                     LKLLPWLLVVLVVVWLMRDKAKAAR"
     misc_feature    395488..>395622
                     /gene="pspG"
                     /locus_tag="O3Y_01760"
                     /note="Phage shock protein G (Phageshock_PspG); Region:
                     Phageshock_PspG; cl11511"
                     /db_xref="CDD:187084"
     gene            395786..396451
                     /locus_tag="O3Y_01765"
                     /db_xref="GeneID:11913320"
     CDS             395786..396451
                     /locus_tag="O3Y_01765"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type Fe3+-hydroxamate transport system
                     component"
                     /protein_id="YP_005332228.1"
                     /db_xref="GI:379740259"
                     /db_xref="GeneID:11913320"
                     /translation="MNRTASAALVTALMVMPLSASAAESFYTASVGAEMWLASTKIDN
                     TRRDDANAPNLYFTFEHGFPYLPNVGLRYTNLEADFASFDKIDYTFYYPLLNRELMKF
                     DVGITLTQYANSDYRAPDARRYDFDQTTFNWYASAEITIPHTPFDVIGQFDFGNNSDL
                     KSSDVMAGLQYHLPIRAGDLAFKAGYRVVDLEFTELAKQSTDVKQSFVFADGWFVGAQ
                     FSF"
     misc_feature    395792..396448
                     /locus_tag="O3Y_01765"
                     /note="outer membrane protein; Region: OMP_w_GlyGly;
                     TIGR04219"
                     /db_xref="CDD:234505"
     gene            396572..396802
                     /locus_tag="O3Y_01770"
                     /db_xref="GeneID:11913321"
     CDS             396572..396802
                     /locus_tag="O3Y_01770"
                     /note="COG0125 Thymidylate kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332229.1"
                     /db_xref="GI:379740260"
                     /db_xref="GeneID:11913321"
                     /translation="MTIPELRELYQTQQLVEAIIEPSFQEGEWIVEFRHQMGGFVLLT
                     DENGEECRYIDLDSASQSAMAVGFRQVRIENQ"
     gene            396909..398732
                     /locus_tag="O3Y_01775"
                     /db_xref="GeneID:11913322"
     CDS             396909..398732
                     /locus_tag="O3Y_01775"
                     /note="COG0369 Sulfite reductase, alpha subunit
                     (flavoprotein)"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase [NADPH] flavoprotein
                     alpha-component"
                     /protein_id="YP_005332230.1"
                     /db_xref="GI:379740261"
                     /db_xref="GeneID:11913322"
                     /translation="MSTGNTLPPALAALASPLNDAQLNQLQQTVTQLNAQQLAWVSGY
                     FWGLSQSNALSVPHISAGQTASAASGKLTIIFASQTGNAKGVAQALLKEAQAAGIQAQ
                     LFDASDYKGKDLAKETHVIFVASTNGEGEAPDNALALHEFLKSKKAPKLPNLKYGVLG
                     LGDSSYQFFCQTGKDFDQFLENLGAQRLVERLDADVDYQAAATEWRKQVLSILKDELT
                     GAAAVTSVATFAVSQTAESHYSKEQPYTASLSTSQKITGRDSGKDVRHIEIDLADSGI
                     TYQPGDALGVWYENRPQLVNALLDSVGLSGHEEVQVDGETLSLHSALTHHYEITAANP
                     QLVAQFAELAQSEKLTSLAQDKEALREYATRTQVIDVLREEKVTLSAIQLLSLLRRLT
                     PRLYSIASSQSEVGEEVHLTVGVVEYEYEGEQRLGGASSFLAHQLEEGAPVKVFVEHN
                     NNFKLPSDDNAPLIMVGPGTGIAPFRSFIQERENRGAAGKNWLLFGDRTFTQDFLYQV
                     EWQKYLKSGVLNRLDVAFSRDQHEKVYVQHRLLEQAELVWQWLQEGAYFYVCGDASRM
                     AKDVHQALITVVEQQGGLNREQAEEYVSELRKAKRYQRDVY"
     misc_feature    396924..398729
                     /locus_tag="O3Y_01775"
                     /note="sulfite reductase subunit alpha; Provisional;
                     Region: cysJ; PRK10953"
                     /db_xref="CDD:182862"
     misc_feature    397128..397520
                     /locus_tag="O3Y_01775"
                     /note="Flavodoxin; Region: Flavodoxin_1; pfam00258"
                     /db_xref="CDD:249722"
     misc_feature    397653..398729
                     /locus_tag="O3Y_01775"
                     /note="Cytochrome p450- like alpha subunits of E. coli
                     sulfite reductase (SiR) multimerize with beta subunits to
                     catalyze the NADPH dependent reduction of sulfite to
                     sulfide. Beta subunits have an Fe4S4 cluster and a
                     siroheme, while the alpha subunits (cysJ...; Region: SiR;
                     cd06199"
                     /db_xref="CDD:99796"
     misc_feature    order(397755..397757,398088..398099,398142..398144,
                     398148..398150,398187..398198)
                     /locus_tag="O3Y_01775"
                     /note="FAD binding pocket [chemical binding]; other site"
                     /db_xref="CDD:99796"
     misc_feature    order(398088..398090,398094..398099)
                     /locus_tag="O3Y_01775"
                     /note="FAD binding motif [chemical binding]; other site"
                     /db_xref="CDD:99796"
     misc_feature    order(398097..398099,398586..398588,398721..398723,
                     398727..398729)
                     /locus_tag="O3Y_01775"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:99796"
     misc_feature    order(398148..398159,398310..398312,398316..398318,
                     398397..398402,398487..398492,398511..398513,
                     398517..398519,398604..398606)
                     /locus_tag="O3Y_01775"
                     /note="NAD binding pocket [chemical binding]; other site"
                     /db_xref="CDD:99796"
     misc_feature    order(398187..398189,398196..398198,398205..398207)
                     /locus_tag="O3Y_01775"
                     /note="phosphate binding motif [ion binding]; other site"
                     /db_xref="CDD:99796"
     misc_feature    order(398301..398303,398313..398324,398328..398330)
                     /locus_tag="O3Y_01775"
                     /note="beta-alpha-beta structure motif; other site"
                     /db_xref="CDD:99796"
     gene            398732..400465
                     /locus_tag="O3Y_01780"
                     /db_xref="GeneID:11913323"
     CDS             398732..400465
                     /locus_tag="O3Y_01780"
                     /note="COG0155 Sulfite reductase, beta subunit
                     (hemoprotein)"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase subunit beta"
                     /protein_id="YP_005332231.1"
                     /db_xref="GI:379740262"
                     /db_xref="GeneID:11913323"
                     /translation="MSANQNPSVQEVLGEVLGPWSDNERLKRESHFLRGTIEQDLQDR
                     ITGGFTADNFQLIRFHGMYQQDDRDIRAERSKQKLEPLHNVMLRARMPGGIITPHQWL
                     AIDKFATEHTLYGSIRLTTRQTFQFHGVLKPNIKLMHQTLNSIGIDSIATAGDVNRNV
                     LCTSNPVESELHLQAYEWAKKISEHLLPKTRAYAEIWLDGEKIEGPDEEPILGSNYLP
                     RKFKTTVVIPPHNDVDVHANDLNFVAIGENGQLVGFNVLVGGGLAMTHGDTSTYPRRA
                     DDFGFIPLEKTLEVAAAVVSTQRDWGNRSNRKNAKTKYTLDRVGVEVFKAEVEKRAGI
                     TFAPSRAYEFTSRGDRIGWVEGIDGKHHLTLFIENGRILDFPGKPLKTGVAEIAKVHQ
                     GDFRMTANQNLIVAGVPADQKPHIEQLAREHGLIDDGVSEQRINSMACVAFPTCPLAM
                     AEAERFLPSFVTEVEGILAKHALPKEENIILRVTGCPNGCGRAMLAEIGLVGKAPGRY
                     NLHLGGNRNGTRIPKMYKENITDTQILQEIDELVGRWASERLDGEGFGDFTIRAGIIE
                     EVIISKRDFYA"
     misc_feature    398759..400459
                     /locus_tag="O3Y_01780"
                     /note="sulfite reductase subunit beta; Provisional;
                     Region: PRK13504"
                     /db_xref="CDD:237402"
     misc_feature    398984..399139
                     /locus_tag="O3Y_01780"
                     /note="Nitrite/Sulfite reductase ferredoxin-like half
                     domain; Region: NIR_SIR_ferr; pfam03460"
                     /db_xref="CDD:251971"
     misc_feature    399260..399739
                     /locus_tag="O3Y_01780"
                     /note="Nitrite and sulphite reductase 4Fe-4S domain;
                     Region: NIR_SIR; pfam01077"
                     /db_xref="CDD:250346"
     misc_feature    399803..399985
                     /locus_tag="O3Y_01780"
                     /note="Nitrite/Sulfite reductase ferredoxin-like half
                     domain; Region: NIR_SIR_ferr; pfam03460"
                     /db_xref="CDD:251971"
     misc_feature    400031..400423
                     /locus_tag="O3Y_01780"
                     /note="The HCP family of iron-sulfur proteins includes
                     hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
                     and carbon monoxide dehydrogenase (CODH), all of which
                     contain [Fe4-S4] metal clusters at their active sites.
                     These proteins have a conserved...; Region: HCP_like;
                     cl19102"
                     /db_xref="CDD:267455"
     gene            400458..401219
                     /locus_tag="O3Y_01785"
                     /db_xref="GeneID:11913324"
     CDS             400458..401219
                     /locus_tag="O3Y_01785"
                     /EC_number="1.8.4.8"
                     /note="COG0175 3'-phosphoadenosine 5'-phosphosulfate
                     sulfotransferase (PAPS reductase)/FAD synthetase and
                     related enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="YP_005332232.1"
                     /db_xref="GI:379740263"
                     /db_xref="GeneID:11913324"
                     /translation="MPNRTVPTLEELLTLNKVQQTLRLTEVNQHLESLTAQERVVWGL
                     ENLQGNHALSSSFGIQAAVMLHLLTSVKSDIPVVLTDTGYLFPETYQFIDELTERLNL
                     NLKVYSAPVSAAWQEARYGKLWEQGVEGIERYNQINKVEPMRRALDELNIGTWFSGLR
                     REQSQSRASLPILSVQNGVFKFLPVIDWTNKEVHYYLKDNDLPYHPLWEQGYLSVGDT
                     HTTQKWQPGMNEEQTRFFGLKRECGLHEDHNDTHQ"
     misc_feature    400503..401195
                     /locus_tag="O3Y_01785"
                     /note="3'-phosphoadenosine 5'-phosphosulfate
                     sulfotransferase (PAPS reductase)/FAD synthetase and
                     related enzymes [Amino acid transport and metabolism /
                     Coenzyme metabolism]; Region: CysH; COG0175"
                     /db_xref="CDD:223253"
     misc_feature    400605..401105
                     /locus_tag="O3Y_01785"
                     /note="This domain is found in phosphoadenosine
                     phosphosulphate (PAPS) reductase enzymes or PAPS
                     sulphotransferase. PAPS reductase is part of the adenine
                     nucleotide alpha hydrolases superfamily also including N
                     type ATP PPases and ATP sulphurylases. A highly...;
                     Region: PAPS_reductase; cd01713"
                     /db_xref="CDD:238846"
     misc_feature    order(400872..400874,400956..400958,400986..400988,
                     400998..401000)
                     /locus_tag="O3Y_01785"
                     /note="Active Sites [active]"
                     /db_xref="CDD:238846"
     gene            401757..403300
                     /locus_tag="O3Y_r13489"
                     /db_xref="GeneID:11913325"
     rRNA            401757..403300
                     /locus_tag="O3Y_r13489"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:11913325"
     gene            403361..403437
                     /locus_tag="O3Y_t13327"
                     /db_xref="GeneID:11913326"
     tRNA            403361..403437
                     /locus_tag="O3Y_t13327"
                     /product="tRNA-Ile"
                     /db_xref="GeneID:11913326"
     gene            403446..403522
                     /locus_tag="O3Y_t13329"
                     /db_xref="GeneID:11913327"
     tRNA            403446..403522
                     /locus_tag="O3Y_t13329"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:11913327"
     gene            403808..406705
                     /locus_tag="O3Y_r13505"
                     /db_xref="GeneID:11913328"
     rRNA            403808..406705
                     /locus_tag="O3Y_r13505"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:11913328"
     gene            406826..406941
                     /locus_tag="O3Y_r13471"
                     /db_xref="GeneID:11913329"
     rRNA            406826..406941
                     /locus_tag="O3Y_r13471"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:11913329"
     gene            406967..407043
                     /locus_tag="O3Y_t13331"
                     /db_xref="GeneID:11913330"
     tRNA            406967..407043
                     /locus_tag="O3Y_t13331"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:11913330"
     gene            complement(407517..408851)
                     /locus_tag="O3Y_01790"
                     /db_xref="GeneID:11913331"
     CDS             complement(407517..408851)
                     /locus_tag="O3Y_01790"
                     /note="COG0025 NhaP-type Na+/H+ and K+/H+ antiporters"
                     /codon_start=1
                     /transl_table=11
                     /product="monovalent cation:H+ antiporter, CPA1 family
                     protein"
                     /protein_id="YP_005332233.1"
                     /db_xref="GI:379740264"
                     /db_xref="GeneID:11913331"
                     /translation="MSVYYTLCFLSAAAMLIAFINSKISRMQTTIAITAGSMMLSLLI
                     LIAGQNDWFHLNQIATETVTSINFENFLLKGILGFLLFAGGLGIKLPNLKDQKWEITV
                     LALGATLFSTFFIGFTLYGFCQLIGIQFDLVYCLLFGALISPTDPIAVLAIVKKLKAP
                     KRISTQIEGESLFNDGFGLVIFVTIFTIAFGHETPTVGSVTLLFIQEAIGGIVYGFLL
                     GLLFHYLISATDDHSMELLLTIGIPTAGYAFADVIHVSGPLAMVVSGIMIGNWTRFIG
                     FSKESEEHLDHFWELVDEFLNGVLFLLIGMSMLLFEFHQEDWILMAFAVPLVLCGRYL
                     SVFVSYIGFKRYRSYNPWSIRILTWGGLRGGLALAMALSIPSGIMVIPEKLIDVKELI
                     LVMTYAVVVFSILVQGSTITPMIEKAKKAEKALQAERNTDNQSPMPQQEQQH"
     misc_feature    complement(407565..408821)
                     /locus_tag="O3Y_01790"
                     /note="NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
                     ion transport and metabolism]; Region: NhaP; COG0025"
                     /db_xref="CDD:223104"
     gene            409048..412728
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /db_xref="GeneID:11913332"
     CDS             409048..412728
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /EC_number="2.1.1.13"
                     /note="COG0646 Methionine synthase I
                     (cobalamin-dependent), methyltransferase domain"
                     /codon_start=1
                     /transl_table=11
                     /product="B12-dependent methionine synthase"
                     /protein_id="YP_005332234.1"
                     /db_xref="GI:379740265"
                     /db_xref="GeneID:11913332"
                     /translation="MGKEVRQQLEQQLKQRILLIDGGMGTMIQSYKLQEEDYRGARFV
                     DWHCDLKGNNDLLVLTQPQIIKEIHSAYLEAGADILETNTFNSTTIAMADYDMQSLSA
                     EINFAAAKLAREVADEWTAKDPSRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGL
                     VEAYSESTRALIKGGSDLILIETIFDTLNAKACAFAVDSVFEELGISLPVMISGTITD
                     ASGRTLSGQTTEAFYNALRHVRPISFGLNCALGPDELRQYVEELSRISECYVSAHPNA
                     GLPNAFGEYDLSAEEMAEHIAEWAQAGFLNLVGGCCGTTPEHIAAIAKAVEGVKPRAL
                     PDLKVECRLSGLEPLNIGPETLFVNVGERTNVTGSARFKRLIKEEQYDEALDVAREQV
                     ENGAQIIDINMDEGMLDAEACMVRFLNLCASEPEISKVPVMVDSSKWEVIEAGLKCIQ
                     GKGIVNSISLKEGKEKFIAQAKLVRRYGAAVIVMAFDEVGQADTRERKLEICRRAYHI
                     LVDEVGFPPEDIIFDPNIFAVATGIDEHNNYALDFINAVADIKRELPHAMISGGVSNV
                     SFSFRGNNYVREAIHAVFLYHCFKHGMDMGIVNAGQLEIYDNVPLKLREAVEDVILNR
                     RSDGTERLLEIAEAYRENSVGKEEDASALEWRAWPVAKRLEHALVKGITEFIVQDTEE
                     ARQQASKPLEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFINAQ
                     KSGSTSNGKILLATVKGDVHDIGKNIVGVVLQCNNFEIIDLGVMVPCEQILKVAREQN
                     VDIIGLSGLITPSLDEMVHVAKEMERQGFELPLLIGGATTSKAHTAVKIEQNYHAPVV
                     YVNNASRAVGVCTSLLSDEQRPGFIERLDLDYERTRDQHARKTPKSRPVTLEQARANK
                     AALDWANYTPPAPAKPGVHVFENIALATLRPYIDWTPFFMTWSLMGKYPAILEHEEVG
                     EEAKRLFHDANALLDKVEREGLLKASGMCALFPAASVGDDIEVYSDESRTQVAHVLYN
                     LRQQTEKPKGANYCLSDYVAPKESGKRDWIGAFAVTGGIGERALADAYKAQGDDYNAI
                     MIQAVADRLAEAFAEYLHEKVRKEIWGYASDENLSNDDLIRERYQGIRPAPGYPACPE
                     HTEKATLWQMLNVEETIGMSLTTSYAMWPGASVSGWYFSHPDSRYFAVAQIQPDQLHS
                     YAERKGWRLEEAEKWLAPNLDA"
     misc_feature    409048..412722
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /note="B12-dependent methionine synthase; Provisional;
                     Region: metH; PRK09490"
                     /db_xref="CDD:236539"
     misc_feature    409051..410031
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /note="Methionine synthase I (cobalamin-dependent),
                     methyltransferase domain [Amino acid transport and
                     metabolism]; Region: MetH; COG0646"
                     /db_xref="CDD:223719"
     misc_feature    410116..410877
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /note="MeTr subgroup of pterin binding enzymes. This
                     family includes cobalamin-dependent methyltransferases
                     such as methyltetrahydrofolate, corrinoid iron-sulfur
                     protein methyltransferase (MeTr) and methionine synthase
                     (MetH).  Cobalamin-dependent...; Region: MeTr; cd00740"
                     /db_xref="CDD:238381"
     misc_feature    order(410140..410142,410350..410352,410413..410415,
                     410419..410421,410497..410499,410614..410616,
                     410731..410733,410743..410745,410836..410838,
                     410842..410844)
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /note="substrate binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238381"
     misc_feature    411025..411663
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /note="B12 binding domain of methionine synthase. This
                     domain binds methylcobalamin, which it uses as an
                     intermediate methyl carrier from methyltetrahydrofolate
                     (CH3H4folate) to homocysteine (Hcy); Region:
                     methionine_synthase_B12_BD; cd02069"
                     /db_xref="CDD:239020"
     misc_feature    order(411130..411132,411142..411144,411193..411195,
                     411202..411204,411316..411336,411343..411345,
                     411454..411462,411466..411474,411553..411555,
                     411619..411621,411628..411630,411637..411639)
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /note="B12 binding site [chemical binding]; other site"
                     /db_xref="CDD:239020"
     misc_feature    411325..411327
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /note="cobalt ligand [ion binding]; other site"
                     /db_xref="CDD:239020"
     misc_feature    411865..412680
                     /gene="metH"
                     /locus_tag="O3Y_01795"
                     /note="Vitamin B12 dependent methionine synthase,
                     activation domain; Region: Met_synt_B12; pfam02965"
                     /db_xref="CDD:251646"
     gene            complement(412801..414156)
                     /locus_tag="O3Y_01800"
                     /db_xref="GeneID:11913333"
     CDS             complement(412801..414156)
                     /locus_tag="O3Y_01800"
                     /EC_number="2.7.2.4"
                     /note="COG0527 Aspartokinases"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase III"
                     /protein_id="YP_005332235.1"
                     /db_xref="GI:379740266"
                     /db_xref="GeneID:11913333"
                     /translation="MSTFNVAKFGGTSVANFEAMSRCSAIIENNPQTRLVVSSACSGV
                     TNLLVELANGVASTERRQAILQQLADIHYVIIDQLADPTRVEKEVKAVLDSVASAAEA
                     ASFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDDHYGRAEPQL
                     KEIAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGL
                     EIWTDVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVF
                     VGSSKEPEKGGTWIRKQVESAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILA
                     KHKISVDLITTSEISVSLTLDKTDTSGGAPELPEAVRAELEELCTVEVEYNLCLIALI
                     GNKMKESRGYAKQVFSVLEDYNLRMICYGASAHNLCFLLHESVSKQAVQKLHKELFEQ
                     E"
     misc_feature    complement(412807..414147)
                     /locus_tag="O3Y_01800"
                     /note="aspartate kinase III; Validated; Region: PRK09084"
                     /db_xref="CDD:236376"
     misc_feature    complement(413284..414147)
                     /locus_tag="O3Y_01800"
                     /note="Amino Acid Kinases (AAK) superfamily, catalytic
                     domain; present in such enzymes like N-acetylglutamate
                     kinase (NAGK), carbamate kinase (CK), aspartokinase (AK),
                     glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK
                     superfamily includes kinases that...; Region: AAK;
                     cl00452"
                     /db_xref="CDD:271488"
     misc_feature    complement(order(413473..413478,413485..413490,
                     414121..414129,414133..414135))
                     /locus_tag="O3Y_01800"
                     /note="nucleotide binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239033"
     misc_feature    complement(order(413548..413556,414034..414042,
                     414124..414129,414133..414135))
                     /locus_tag="O3Y_01800"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239033"
     misc_feature    complement(413008..413232)
                     /locus_tag="O3Y_01800"
                     /note="ACT domains are commonly involved in specifically
                     binding an amino acid or other small ligand leading to
                     regulation of the enzyme; Region: ACT; cl09141"
                     /db_xref="CDD:271654"
     misc_feature    complement(412810..413001)
                     /locus_tag="O3Y_01800"
                     /note="ACT domains located C-terminal to the catalytic
                     domain of the lysine-sensitive aspartokinase isoenzyme
                     AKIII; Region: ACT_AKiii-LysC-EC_2; cd04917"
                     /db_xref="CDD:153189"
     misc_feature    complement(order(412888..412917,412921..412926,
                     412936..412938,412945..412959,412963..412968))
                     /locus_tag="O3Y_01800"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153189"
     gene            414620..415738
                     /locus_tag="O3Y_01805"
                     /db_xref="GeneID:11913334"
     CDS             414620..415738
                     /locus_tag="O3Y_01805"
                     /note="COG0075 Serine-pyruvate aminotransferase/archaeal
                     aspartate aminotransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate transaminase /
                     serine--pyruvate aminotransferase"
                     /protein_id="YP_005332236.1"
                     /db_xref="GI:379740267"
                     /db_xref="GeneID:11913334"
                     /translation="MTIRSFIPPHRILMGPGPSAISPQVLQALSRPTVGHLDPLFIGM
                     MDELKQLLKYAFQTENEFTIAVSAPGSAGMEACFVNLVEPGDKVIVCRNGVFGERMRD
                     NAVRCGAEVVVVDDEWGCPVSVEKVQATIDEHPDAKILAFVQAETSTGALSDAQALGA
                     LAKQHGLLTIVDAVTSLGGVPLLVDEWQLDAVYSGSQKCLSCVPGLAPLTFSPRAIEK
                     IQSRKTPIQSWFLDQSLVLGYWSGAGKRSYHHTAPVNSLYALHEALLLLQQEGLEHAW
                     QRHRLMHEKLKQGLEQLGFQFVVAEPYRLPQLNAIYVPEGIEEAKVRSHLLNEYNLEI
                     GAGLGALAGKAWRIGVMGYGARSENIALCLRALEESLR"
     misc_feature    414641..415735
                     /locus_tag="O3Y_01805"
                     /note="Serine-pyruvate aminotransferase/archaeal aspartate
                     aminotransferase [Amino acid transport and metabolism];
                     Region: COG0075"
                     /db_xref="CDD:223153"
     misc_feature    order(414827..414832,414839..414841,415046..415048,
                     415133..415135,415142..415144,415202..415204,
                     415211..415213)
                     /locus_tag="O3Y_01805"
                     /note="pyridoxal 5'-phosphate binding pocket [chemical
                     binding]; other site"
                     /db_xref="CDD:99742"
     misc_feature    415211..415213
                     /locus_tag="O3Y_01805"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99742"
     gene            complement(415817..417601)
                     /locus_tag="O3Y_01810"
                     /db_xref="GeneID:11913335"
     CDS             complement(415817..417601)
                     /locus_tag="O3Y_01810"
                     /note="COG3307 Lipid A core - O-antigen ligase and related
                     enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen polymerase"
                     /protein_id="YP_005332237.1"
                     /db_xref="GI:379740268"
                     /db_xref="GeneID:11913335"
                     /translation="MATLLLSGTRLEPHAPNLPLNKPFLFALAVVYLLAMHFFMPNPG
                     GAGLALSFNTTVWIATSITLAIGLYQLANNQALRYSKLTIGLWLSCALLTLPITYSNA
                     DWFHTLGRLVGLWAGFTLFLVLQQFRFSNKHKQRLLWFILLGSVIEAVIGLIQYFWLE
                     PGNPFGYDTEANRPYGIFQQPNVMASFLATGLVLSGYLLARQPEKYDSRWSKIGILYA
                     TPLLTAPLLVVLASRTGWLASLLSIALVAPYLYRFASRRRFTLWLLAITLGICAGFTA
                     MYGQGTSGFVANKADLESPRRFTFPQTIDMIIEKPFTGYGYGKFEAQYLLYTARQHQL
                     NSSYPAGLASMDHPHNELLYWGVEGGLLPVMGILLAACFCALRIYAAKRGTRMAMLAL
                     FVPITLHAQLEYPFYHSAIHWITFIILIYWVDQRVARYRLASFTTLTKSLLRITSLVL
                     PIVTSLYMVTALHTNYVLTQFEKSQPLNPELLKNVTNPLVWQDRFDWDIYSTYLNIGL
                     HEQKAELIQPYIDWSLQIIQHKPRPAFYSNLILAYQGLGDTSRAQQIRREAEFLFPNQ
                     DFSTVQYHPSIKVNSATSDAEVPSAATP"
     misc_feature    complement(416333..417538)
                     /locus_tag="O3Y_01810"
                     /note="Lipid A core - O-antigen ligase and related enzymes
                     [Cell envelope biogenesis, outer membrane]; Region: RfaL;
                     COG3307"
                     /db_xref="CDD:225844"
     misc_feature    complement(416516..416950)
                     /locus_tag="O3Y_01810"
                     /note="O-Antigen ligase; Region: Wzy_C; pfam04932"
                     /db_xref="CDD:252887"
     misc_feature    complement(415883..416443)
                     /locus_tag="O3Y_01810"
                     /note="Domain of unknown function (DUF3366); Region:
                     DUF3366; pfam11846"
                     /db_xref="CDD:256667"
     gene            complement(417666..420488)
                     /gene="uvrA"
                     /locus_tag="O3Y_01815"
                     /db_xref="GeneID:11913336"
     CDS             complement(417666..420488)
                     /gene="uvrA"
                     /locus_tag="O3Y_01815"
                     /note="COG0178 Excinuclease ATPase subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="YP_005332238.1"
                     /db_xref="GI:379740269"
                     /db_xref="GeneID:11913336"
                     /translation="MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EVYDYLRLLYARVGEPRCPEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKG
                     EHVKTLENLAAQGFIRARIDGETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLA
                     ESFETALELSGGIVVVAPMEGDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGAC
                     PTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTP
                     FNKLSKKIQEIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSV
                     REELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQ
                     RAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVH
                     GGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKN
                     VDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFD
                     KVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCE
                     ACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREF
                     FDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILD
                     EPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLI
                     IAEGTPEDVAQIEASHTARFLKPLLN"
     misc_feature    complement(417669..420488)
                     /gene="uvrA"
                     /locus_tag="O3Y_01815"
                     /note="excinuclease ABC subunit A; Reviewed; Region: uvrA;
                     PRK00349"
                     /db_xref="CDD:234734"
     misc_feature    complement(<420141..420479)
                     /gene="uvrA"
                     /locus_tag="O3Y_01815"
                     /note="ATP-binding cassette domain I of the excision
                     repair protein UvrA; Region: ABC_UvrA_I; cd03270"
                     /db_xref="CDD:213237"
     misc_feature    complement(<419538..419741)
                     /gene="uvrA"
                     /locus_tag="O3Y_01815"
                     /note="Cysteine-rich CPCC; Region: Cys_rich_CPCC;
                     pfam14206"
                     /db_xref="CDD:258401"
     misc_feature    complement(418767..>419105)
                     /gene="uvrA"
                     /locus_tag="O3Y_01815"
                     /note="ATP-binding cassette domain I of the excision
                     repair protein UvrA; Region: ABC_UvrA_I; cd03270"
                     /db_xref="CDD:213237"
     misc_feature    complement(417729..418652)
                     /gene="uvrA"
                     /locus_tag="O3Y_01815"
                     /note="ATP-binding cassette domain II of the excision
                     repair protein UvrA; Region: ABC_UvrA_II; cd03271"
                     /db_xref="CDD:213238"
     gene            complement(420644..421516)
                     /locus_tag="O3Y_01820"
                     /db_xref="GeneID:11913337"
     CDS             complement(420644..421516)
                     /locus_tag="O3Y_01820"
                     /note="COG1210 UDP-glucose pyrophosphorylase"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase"
                     /protein_id="YP_005332239.1"
                     /db_xref="GI:379740270"
                     /db_xref="GeneID:11913337"
                     /translation="MIKKCLFPAAGYGTRFLPATKSMPKEMMPVVNKPLIEYGVDEAI
                     QAGITGMCIVTGRGKHSIMDHFDMNYELEHQIRGTNKEELLGDIRKIIESANFTFIRQ
                     REMKGLGHAILTGKELVGDEPFAVVLADDLCVNEEQGVLAQMVALYKQFRCSIVAVQE
                     VPENETHKYGVIAGEMIKDDLFRVDNMVEKPEPGTAPSNLAIIGRYILTPDIFDLIEQ
                     TEPGKGGEIQITDALLKQAKAGCVLAYKFKGKRFDCGSVEGYIEATNFCYENMYKKND
                     QKVELAKKSTHKGQ"
     misc_feature    complement(420725..421510)
                     /locus_tag="O3Y_01820"
                     /note="Prokaryotic UGPase catalyses the synthesis of
                     UDP-glucose; Region: UGPase_prokaryotic; cd02541"
                     /db_xref="CDD:133021"
     misc_feature    complement(420674..421507)
                     /locus_tag="O3Y_01820"
                     /note="dTDP-glucose pyrophosphorylase [Cell envelope
                     biogenesis, outer membrane]; Region: RfbA; COG1209"
                     /db_xref="CDD:224130"
     misc_feature    complement(order(420827..420829,420911..420913,
                     420947..420952,421007..421012,421124..421129,
                     421133..421135,421193..421204,421211..421213,
                     421439..421444,421484..421495))
                     /locus_tag="O3Y_01820"
                     /note="active site"
                     /db_xref="CDD:133021"
     misc_feature    complement(order(420725..420727,420731..420739,
                     420743..420751,420767..420769,420839..420841,
                     421013..421015,421202..421204,421208..421210,
                     421214..421219,421301..421306,421316..421318,
                     421322..421330,421334..421336,421406..421408,
                     421418..421426,421430..421438,421448..421456,
                     421460..421474,421481..421483))
                     /locus_tag="O3Y_01820"
                     /note="tetramer interface; other site"
                     /db_xref="CDD:133021"
     gene            complement(421689..422333)
                     /locus_tag="O3Y_01825"
                     /db_xref="GeneID:11913338"
     CDS             complement(421689..422333)
                     /locus_tag="O3Y_01825"
                     /note="COG2771 DNA-binding HTH domain-containing proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332240.1"
                     /db_xref="GI:379740271"
                     /db_xref="GeneID:11913338"
                     /translation="MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLL
                     REYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFETILFNVEKRLRTEDLLTFGNLK
                     GLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
                     QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL"
     misc_feature    complement(421695..422318)
                     /locus_tag="O3Y_01825"
                     /note="DNA-binding transcriptional regulator CsgD;
                     Provisional; Region: PRK10100"
                     /db_xref="CDD:182241"
     misc_feature    complement(421701..421871)
                     /locus_tag="O3Y_01825"
                     /note="C-terminal DNA-binding domain of LuxR-like
                     proteins. This domain contains a helix-turn-helix motif
                     and binds DNA. Proteins belonging to this group are
                     response regulators; some act as transcriptional
                     activators, others as transcriptional repressors. Many...;
                     Region: LuxR_C_like; cd06170"
                     /db_xref="CDD:99777"
     misc_feature    complement(order(421728..421730,421761..421775,
                     421779..421784,421788..421793,421815..421823,
                     421860..421868))
                     /locus_tag="O3Y_01825"
                     /note="DNA binding residues [nucleotide binding]"
                     /db_xref="CDD:99777"
     misc_feature    complement(order(421701..421706,421713..421715,
                     421722..421730,421821..421823,421827..421829,
                     421833..421835))
                     /locus_tag="O3Y_01825"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99777"
     gene            422625..423158
                     /locus_tag="O3Y_01830"
                     /db_xref="GeneID:11913339"
     CDS             422625..423158
                     /locus_tag="O3Y_01830"
                     /note="COG0629 Single-stranded DNA-binding protein"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="YP_005332241.1"
                     /db_xref="GI:379740272"
                     /db_xref="GeneID:11913339"
                     /translation="MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDK
                     ATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEV
                     VVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
                     QPQYNEPPMDFDDDIPF"
     misc_feature    422637..423155
                     /locus_tag="O3Y_01830"
                     /note="Single-stranded DNA-binding protein [DNA
                     replication, recombination, and repair]; Region: Ssb;
                     COG0629"
                     /db_xref="CDD:223702"
     misc_feature    422649..422939
                     /locus_tag="O3Y_01830"
                     /note="SSB_OBF: A subfamily of OB folds similar to the OB
                     fold of ssDNA-binding protein (SSB). SSBs bind with high
                     affinity to ssDNA. They bind to and protect ssDNA
                     intermediates during DNA metabolic pathways. All bacterial
                     and eukaryotic SSBs studied to date...; Region: SSB_OBF;
                     cd04496"
                     /db_xref="CDD:239942"
     misc_feature    order(422649..422660,422733..422741,422784..422786,
                     422790..422792,422853..422855,422880..422882,
                     422913..422915,422922..422924)
                     /locus_tag="O3Y_01830"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239942"
     misc_feature    order(422664..422672,422688..422690,422718..422720,
                     422739..422744,422778..422783,422787..422789,
                     422793..422795,422799..422801,422805..422807,
                     422844..422849,422871..422873,422877..422879,
                     422883..422888,422925..422927,422931..422933)
                     /locus_tag="O3Y_01830"
                     /note="ssDNA binding site [nucleotide binding]; other
                     site"
                     /db_xref="CDD:239942"
     misc_feature    order(422853..422855,422859..422861,422865..422867)
                     /locus_tag="O3Y_01830"
                     /note="tetramer (dimer of dimers) interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239942"
     misc_feature    <423051..423155
                     /locus_tag="O3Y_01830"
                     /note="putative single-stranded DNA-binding protein;
                     Region: PHA01740"
                     /db_xref="CDD:133956"
     gene            423336..425294
                     /locus_tag="O3Y_01835"
                     /db_xref="GeneID:11913340"
     CDS             423336..425294
                     /locus_tag="O3Y_01835"
                     /note="COG2199 FOG: GGDEF domain"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein CsrD"
                     /protein_id="YP_005332242.1"
                     /db_xref="GI:379740273"
                     /db_xref="GeneID:11913340"
                     /translation="MTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDP
                     DAAYSMQRWMPKMLQASGIIEMQLTSEAGPIYRFKDTTNTIEASRLHQVALPLKRNPG
                     YVMHFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRM
                     ILAGRVEQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGT
                     ANRVLYDSKLESALLESGAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIV
                     QRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGV
                     TMYQEGERRGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLR
                     PEEILLYRQACYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLD
                     RAVFSSVVSFLKRSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFS
                     EAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKI
                     DQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQML
                     PPLPPEPLKRPPRLSVKPIGKRNRWRTK"
     misc_feature    423336..425204
                     /locus_tag="O3Y_01835"
                     /note="regulatory protein CsrD; Provisional; Region:
                     PRK11059"
                     /db_xref="CDD:236833"
     misc_feature    423885..424439
                     /locus_tag="O3Y_01835"
                     /note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
                     domain) [Signal    transduction mechanisms]; Region:
                     COG2199"
                     /db_xref="CDD:225109"
     misc_feature    order(424068..424082,424107..424109,424203..424205,
                     424386..424388)
                     /locus_tag="O3Y_01835"
                     /note="nucleotidyl binding site; other site"
                     /db_xref="CDD:143637"
     misc_feature    order(424068..424070,424203..424205)
                     /locus_tag="O3Y_01835"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143637"
     misc_feature    424500..425186
                     /locus_tag="O3Y_01835"
                     /note="EAL domain. This domain is found in diverse
                     bacterial signaling proteins. It is called EAL after its
                     conserved residues and is also known as domain of unknown
                     function 2 (DUF2).  The EAL domain has been shown to
                     stimulate degradation of a second...; Region: EAL;
                     cd01948"
                     /db_xref="CDD:238923"
     gene            425307..426746
                     /locus_tag="O3Y_01840"
                     /db_xref="GeneID:11913341"
     CDS             425307..426746
                     /locus_tag="O3Y_01840"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshI"
                     /protein_id="YP_005332243.1"
                     /db_xref="GI:379740274"
                     /db_xref="GeneID:11913341"
                     /translation="MKKPSWIEKLIAPKVASQQLYVVVQPEHLYFTSDDLSPIPPQPL
                     QQQSWQAVLVQTLQKHAVHDVQIHLVLHSQLYQTYQIEQPSIPREEWSAALPFLLKDM
                     LSEKVTDVVADAHPLPGSGKVQAYVISKRTILELQSMAVSAGLTLGRVIPEQAIWGLV
                     GGELSHFLLLHRSMGGSFKLDAFVDRQCSFQRTLRGITAPVTDNAASALQLDSLALEL
                     QRSIDYLSAQLKGGSLQQLKVCCDGEDQQALITGLNERLSVRASGLDGEATICGEQLA
                     RYARNIPQETINFYQDHLKPKREKFTLTNLLLAWLALSVVLLLGYAGVGYQNWVIQQQ
                     WQEQQQHNQSLTEQAAHLRQQVAVHLPSPAKQAAIGRIKQEISSKQQALDAIGQFDVA
                     QQTGYSGVLNSLAQLARSDISLSSITLDSSQLNVQGLARDPAAIPNWISQFKQELHLM
                     GRSFEQLKIGRNDQDMITFELNTQRGEQR"
     misc_feature    426165..>426626
                     /locus_tag="O3Y_01840"
                     /note="Fimbrial assembly protein (PilN); Region: PilN;
                     cl19830"
                     /db_xref="CDD:268183"
     gene            426743..427393
                     /locus_tag="O3Y_01845"
                     /db_xref="GeneID:11913342"
     CDS             426743..427393
                     /locus_tag="O3Y_01845"
                     /note="COG0086 DNA-directed RNA polymerase, beta'
                     subunit/160 kD subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshJ"
                     /protein_id="YP_005332244.1"
                     /db_xref="GI:379740275"
                     /db_xref="GeneID:11913342"
                     /translation="MKSGWQNFESRFSALSQREKVLITLCGSVLIVMMLLLGLIEPAL
                     KQGQARQLQMQTLTSSNLQLQGEIMALQAQLAKNPDQELDVELSQLTLQSQEISELLA
                     AKMTSMVAPSEMPNLLESVLKQGQQLKLVSLESLPAEPIVRATESRSESEYYIHPVRM
                     ELTGSYFAIRDYLQALEALPVKYYWRHFHYRVESYPQARVILEVYTLGSREEFIGG"
     misc_feature    426758..>426985
                     /locus_tag="O3Y_01845"
                     /note="Type II secretion system (T2SS), protein M; Region:
                     T2SM; cl01222"
                     /db_xref="CDD:260841"
     misc_feature    426929..>427282
                     /locus_tag="O3Y_01845"
                     /note="Pilus assembly protein, PilO; Region: PilO;
                     cl01234"
                     /db_xref="CDD:260846"
     gene            427386..427703
                     /locus_tag="O3Y_01850"
                     /db_xref="GeneID:11913343"
     CDS             427386..427703
                     /locus_tag="O3Y_01850"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshK"
                     /protein_id="YP_005332245.1"
                     /db_xref="GI:379740276"
                     /db_xref="GeneID:11913343"
                     /translation="MVRYGVLLALIAVTYSYAGEDPTAPLGWVSPAKPELQKPSYPVP
                     TLQSIVCAEGRSCYAIIEQRVVAQGDVVNGYRVATIHPDQVKLTRAGKEWRLALFTLD
                     IKQ"
     misc_feature    <427518..427673
                     /locus_tag="O3Y_01850"
                     /note="Type IV pilus biogenesis; Region: Pilus_PilP;
                     cl21712"
                     /db_xref="CDD:272132"
     gene            427718..429397
                     /locus_tag="O3Y_01855"
                     /db_xref="GeneID:11913344"
     CDS             427718..429397
                     /locus_tag="O3Y_01855"
                     /note="COG4796 Type II secretory pathway, component HofQ"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshL"
                     /protein_id="YP_005332246.1"
                     /db_xref="GI:379740277"
                     /db_xref="GeneID:11913344"
                     /translation="MRKIVLASVVTSLVGCSMGHRDPVEAKQALNQAINETNSRQIDQ
                     LPPSVEADLMPDMDTLTASEPKTLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVT
                     GRITLNLTDVTLDEALGVVRDLYGFEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGR
                     SLTSITTGTITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTN
                     ESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR
                     QVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLD
                     AIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY
                     VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQT
                     KKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVP
                     ALGHLFRNTTKLTQKTELVILLKPTVVGVNTWQKELERSRSLLQEWFPDSQ"
     misc_feature    428150..428461
                     /locus_tag="O3Y_01855"
                     /note="Secretin N-terminal domain; Region: Secretin_N_2;
                     pfam07655"
                     /db_xref="CDD:254336"
     misc_feature    428441..429322
                     /locus_tag="O3Y_01855"
                     /note="pilus (MSHA type) biogenesis protein MshL; Region:
                     pilus_MshL; TIGR02519"
                     /db_xref="CDD:233908"
     misc_feature    428792..429325
                     /locus_tag="O3Y_01855"
                     /note="Bacterial type II and III secretion system protein;
                     Region: Secretin; pfam00263"
                     /db_xref="CDD:249725"
     gene            429402..430247
                     /locus_tag="O3Y_01860"
                     /db_xref="GeneID:11913345"
     CDS             429402..430247
                     /locus_tag="O3Y_01860"
                     /note="COG3267 Type II secretory pathway, component ExeA
                     (predicted ATPase)"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshM"
                     /protein_id="YP_005332247.1"
                     /db_xref="GI:379740278"
                     /db_xref="GeneID:11913345"
                     /translation="MYLSHFGLEQLPFHLTPDTELFLGLAPHFEAIQTLSAAIEMGEG
                     VSKLTGEVGTGKTMVCRMLLTHLGDEVALIYLPNPMLSGEELRQAVAAELQLDVASPV
                     RVVEQIQTRLIELHQQGKRVVALVDEAQALSDEALETLRLFGNLETEQTKLLQIVLIG
                     QPELDVRLAQHHLRQFRQRITFNANLRPLTQAETEVYIESRLQKAQAPYPLFNATLKK
                     AVWRASQGIPRLINQICHKALLLAWHEQSPLVNQHHLFAAIHDTYDSCKPRFKTPILW
                     GWSKP"
     misc_feature    429402..430175
                     /locus_tag="O3Y_01860"
                     /note="Type II secretory pathway, component ExeA
                     (predicted ATPase) [Intracellular trafficking and
                     secretion]; Region: ExeA; COG3267"
                     /db_xref="CDD:225806"
     misc_feature    429543..429950
                     /locus_tag="O3Y_01860"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    429549..429572
                     /locus_tag="O3Y_01860"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(429552..429575,429780..429782,429882..429884)
                     /locus_tag="O3Y_01860"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    429768..429785
                     /locus_tag="O3Y_01860"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    429924..429926
                     /locus_tag="O3Y_01860"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     gene            430244..431395
                     /locus_tag="O3Y_01865"
                     /db_xref="GeneID:11913346"
     CDS             430244..431395
                     /locus_tag="O3Y_01865"
                     /note="COG0457 FOG: TPR repeat"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshN"
                     /protein_id="YP_005332248.1"
                     /db_xref="GI:379740279"
                     /db_xref="GeneID:11913346"
                     /translation="MSVVNEALAKSAQRSHSRLSNIERIDVAKPKARPAWLWVMLGFG
                     VSLAVGGWSISLQSVDTIPSSAEVVRPEVPSPTQKTTQQSIALYQAPVNSEALVKNET
                     LVQKETLPKNETSVKNAVLAKVEGSPTSLKQTANRQREQTALGSELNAEPVLNLVDNS
                     EPSFFEEEVSSLPSSSPVMIVEQVSLTPEQLAQKALQRAQKAMESNELQTAVSAYTEA
                     LRYTPHDEMARQKLAALYYGKGDGRKAFDLMQAGIERNPDGEVLRLALAKLLVKEKQE
                     ASALVPLAYLPSQPSIEYLSLRAALAQKTKQDEIARESYQQLTEKDPNNGRWWLGLAI
                     QQERALQWPAAQHAYQQALNKVGLSSQSQAFIHQRLQLLASLEETQSAN"
     misc_feature    430811..431014
                     /locus_tag="O3Y_01865"
                     /note="TPR repeat; Region: TPR_11; pfam13414"
                     /db_xref="CDD:257739"
     misc_feature    430820..431083
                     /locus_tag="O3Y_01865"
                     /note="Tetratricopeptide repeat domain; typically contains
                     34 amino acids
                     [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
                     X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
                     a variety of organisms including bacteria, cyanobacteria,
                     yeast, fungi; Region: TPR; cd00189"
                     /db_xref="CDD:238112"
     misc_feature    order(430820..430825,430829..430834,430841..430846,
                     430931..430936,430940..430945,430952..430957,
                     431033..431038,431045..431050,431057..431062)
                     /locus_tag="O3Y_01865"
                     /note="binding surface"
                     /db_xref="CDD:238112"
     misc_feature    order(430838..430840,430874..430876,430886..430888,
                     430895..430897,430940..430942,430976..430978,
                     430988..430990,430997..430999,431042..431044,
                     431078..431080)
                     /locus_tag="O3Y_01865"
                     /note="TPR motif; other site"
                     /db_xref="CDD:238112"
     misc_feature    431114..431305
                     /locus_tag="O3Y_01865"
                     /note="TPR repeat; Region: TPR_11; pfam13414"
                     /db_xref="CDD:257739"
     gene            431385..433112
                     /locus_tag="O3Y_01870"
                     /db_xref="GeneID:11913347"
     CDS             431385..433112
                     /locus_tag="O3Y_01870"
                     /note="COG2804 Type II secretory pathway, ATPase PulE/Tfp
                     pilus assembly pathway, ATPase PilB"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshE"
                     /protein_id="YP_005332249.1"
                     /db_xref="GI:379740280"
                     /db_xref="GeneID:11913347"
                     /translation="MPINKLRKRLGDLLVEEGIVSEAQLEQALNAQKNTGRRLGDTLI
                     SLGFLSETQLLNFLAQQLSLPVIDLSRAHVDIDAVPLLPEVHARRLRALVIGRSGDTL
                     RIAMSDPADLFAQEALLNQLPDYGFEFVIAPEKQLVDGFDRYYRRTKEIVSFAEQLHA
                     EHKTNDSFDFEITDSDSDEVTVVKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDG
                     VLHETLLHEVNIASALVLRLKLMANLDISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQ
                     HGESVVMRLLNQSAGVRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLY
                     GALNELNTSGKKIITAEDPVEYRISRINQVQVNPKINLDFSTLLRTFLRQDPDIILVG
                     EMRDQETVEIGLRAALTGHLVLSTLHTNDAVDSALRLIDMGAPGYLVASAVRAVVAQR
                     LVRKVCPDCSGHDEVDEARRQWLVTRFPNQAAAKFTRGRGCQNCNLTGYRGRIGVFEM
                     LELDQPMMDCLRANDAVAFSKAARSNTDYKPLLASAMELALQGIVSLDEVMSLGEGDS
                     SGLVEPIYL"
     misc_feature    431511..431837
                     /locus_tag="O3Y_01870"
                     /note="Type II secretion system (T2SS), protein E,
                     N-terminal domain; Region: T2SE_Nter; pfam05157"
                     /db_xref="CDD:253049"
     misc_feature    431574..433067
                     /locus_tag="O3Y_01870"
                     /note="Type II secretory pathway, ATPase PulE/Tfp pilus
                     assembly pathway, ATPase PilB [Cell motility and secretion
                     / Intracellular trafficking and secretion]; Region: PulE;
                     COG2804"
                     /db_xref="CDD:225363"
     misc_feature    432093..432890
                     /locus_tag="O3Y_01870"
                     /note="PulE/GspE The type II secretory pathway is the main
                     terminal branch of the general secretory pathway (GSP).
                     It is responsible for the export the majority of
                     Gram-negative bacterial exoenzymes and toxins. PulE is a
                     cytoplasmic protein of the GSP, which...; Region:
                     PulE-GspE; cd01129"
                     /db_xref="CDD:238549"
     misc_feature    432351..432374
                     /locus_tag="O3Y_01870"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:238549"
     misc_feature    order(432354..432356,432366..432374,432429..432431,
                     432435..432440,432558..432563)
                     /locus_tag="O3Y_01870"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238549"
     misc_feature    432546..432563
                     /locus_tag="O3Y_01870"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:238549"
     gene            433121..434344
                     /locus_tag="O3Y_01875"
                     /db_xref="GeneID:11913348"
     CDS             433121..434344
                     /locus_tag="O3Y_01875"
                     /note="COG1459 Type II secretory pathway, component PulF"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshG"
                     /protein_id="YP_005332250.1"
                     /db_xref="GI:379740281"
                     /db_xref="GeneID:11913348"
                     /translation="MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQ
                     GAAEKSAFDFNWKALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQL
                     KAALDSVCNELTNGRNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQ
                     EVETRKRIKTAMRYPTFVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITT
                     SDFFVNYWGLLLGIIVGLLFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFA
                     RTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTP
                     LVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLAL
                     GIFLPMWGMMDALKG"
     misc_feature    433121..434338
                     /locus_tag="O3Y_01875"
                     /note="Type II secretory pathway, component PulF [Cell
                     motility and secretion / Intracellular trafficking and
                     secretion]; Region: PulF; COG1459"
                     /db_xref="CDD:224376"
     misc_feature    433334..433705
                     /locus_tag="O3Y_01875"
                     /note="Type II secretion system (T2SS), protein F; Region:
                     T2SF; pfam00482"
                     /db_xref="CDD:249893"
     misc_feature    433943..434311
                     /locus_tag="O3Y_01875"
                     /note="Type II secretion system (T2SS), protein F; Region:
                     T2SF; pfam00482"
                     /db_xref="CDD:249893"
     gene            434347..434799
                     /locus_tag="O3Y_01880"
                     /db_xref="GeneID:11913349"
     CDS             434347..434799
                     /locus_tag="O3Y_01880"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshF"
                     /protein_id="YP_005332251.1"
                     /db_xref="GI:379740282"
                     /db_xref="GeneID:11913349"
                     /translation="MKIGFERVRFVLWFVLVVVLLTAMFSVWRSMFSDMLHTALEMTR
                     LQLIDRANTYKQEWVLQGRPALLQIEQAEIPMQHGWVFPKLDQGVDCEKVLFLLYPDR
                     KVLDWLPRVTALQRANGYQCRYQYGDRVQLDVELKDRYFAINASFLMR"
     gene            434880..435434
                     /locus_tag="O3Y_01885"
                     /db_xref="GeneID:11913350"
     CDS             434880..435434
                     /locus_tag="O3Y_01885"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA pilin protein MshB"
                     /protein_id="YP_005332252.1"
                     /db_xref="GI:379740283"
                     /db_xref="GeneID:11913350"
                     /translation="MKKMQQGFSLVELVIVIVVVGLLAVAALPRFLDVTDEAKKASIE
                     GVAGGFATGVLSARAQWEAQARPTLTANNYPSINYDGVNFWLTTSATSGYRDGYPLGL
                     NTDDATYPSGLTDQACIDLMNNLLQNPPQVGTETQAASNSNYKYSAKANSGAATCTYA
                     QNEKGSQHEFVYEVNTGRVTVTLQ"
     gene            435469..435996
                     /locus_tag="O3Y_01890"
                     /db_xref="GeneID:11913351"
     CDS             435469..435996
                     /locus_tag="O3Y_01890"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA pilin protein MshA"
                     /protein_id="YP_005332253.1"
                     /db_xref="GI:379740284"
                     /db_xref="GeneID:11913351"
                     /translation="MKRQGGFTLIELVVVIVILGILAVTAAPRFLNLQGDAREASLEG
                     LRGAVAGAMGISYGRAAIKGIETLDYTAYTDANTPGTVIDGIAHKFGYPTAVNDSTAN
                     LGGIMQTLDTSSEFIALQSSTGTNSNQANLWIDIGFNGYNDLCVRYTAATSNNPATVA
                     MQTGVAGTACGKPAQ"
     misc_feature    435469..>435720
                     /locus_tag="O3Y_01890"
                     /note="Type II secretory pathway, pseudopilin PulG [Cell
                     motility and secretion / Intracellular trafficking and
                     secretion]; Region: PulG; COG2165"
                     /db_xref="CDD:225076"
     misc_feature    <435469..435534
                     /locus_tag="O3Y_01890"
                     /note="Type IV pilin N-term methylation site GFxxxE;
                     Region: N_methyl_2; pfam13544"
                     /db_xref="CDD:257863"
     gene            436033..436521
                     /locus_tag="O3Y_01895"
                     /db_xref="GeneID:11913352"
     CDS             436033..436521
                     /locus_tag="O3Y_01895"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA pilin protein MshC"
                     /protein_id="YP_005332254.1"
                     /db_xref="GI:379740285"
                     /db_xref="GeneID:11913352"
                     /translation="MKIIGKGFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQS
                     EILASLRLTQSRAMQRTGYCNRWLLTSNAAIQVSPQAMQGSCLSVFPSNPTDPSWVDA
                     AVSGVALSLAGSGGASFLDFDSLGRATQCISAGCTVSISSSTHNEVRQVCINTEGYIY
                     AC"
     misc_feature    436048..>436305
                     /locus_tag="O3Y_01895"
                     /note="Type II secretory pathway, pseudopilin PulG [Cell
                     motility and secretion / Intracellular trafficking and
                     secretion]; Region: PulG; COG2165"
                     /db_xref="CDD:225076"
     misc_feature    436048..436107
                     /locus_tag="O3Y_01895"
                     /note="Prokaryotic N-terminal methylation motif; Region:
                     N_methyl; pfam07963"
                     /db_xref="CDD:254547"
     gene            436511..437080
                     /locus_tag="O3Y_01900"
                     /db_xref="GeneID:11913353"
     CDS             436511..437080
                     /locus_tag="O3Y_01900"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA pilin protein MshD"
                     /protein_id="YP_005332255.1"
                     /db_xref="GI:379740286"
                     /db_xref="GeneID:11913353"
                     /translation="MPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAE
                     QVLSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTG
                     ESNNTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPAT
                     ERTHYKRIALVIYDPQGNAYPFAAIKGNY"
     misc_feature    436520..436936
                     /locus_tag="O3Y_01900"
                     /note="Type II secretory pathway, pseudopilin PulG [Cell
                     motility and secretion / Intracellular trafficking and
                     secretion]; Region: PulG; COG2165"
                     /db_xref="CDD:225076"
     gene            437080..437850
                     /locus_tag="O3Y_01905"
                     /db_xref="GeneID:11913354"
     CDS             437080..437850
                     /locus_tag="O3Y_01905"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshO"
                     /protein_id="YP_005332256.1"
                     /db_xref="GI:379740287"
                     /db_xref="GeneID:11913354"
                     /translation="MSRGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREAL
                     IQQGRFLTERMSRELREAVPNSVIVANGCIEFLPIVNSAIYQSLPTNTVNTLRLLPIT
                     KSIQAGERLVISPNDPAALRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLF
                     TLQSPANRAYFYTTPVAYCYQGNSIYRYAGYSLNRTALSPAYLGNGVLMAQSLSGANF
                     SVLAPQLQRNGLVKIELTFADKGEQVRFDHDALVYNTP"
     misc_feature    437080..>437337
                     /locus_tag="O3Y_01905"
                     /note="Type II secretory pathway, pseudopilin PulG [Cell
                     motility and secretion / Intracellular trafficking and
                     secretion]; Region: PulG; COG2165"
                     /db_xref="CDD:225076"
     misc_feature    437086..437145
                     /locus_tag="O3Y_01905"
                     /note="Prokaryotic N-terminal methylation motif; Region:
                     N_methyl; pfam07963"
                     /db_xref="CDD:254547"
     gene            437825..438247
                     /locus_tag="O3Y_01910"
                     /db_xref="GeneID:11913355"
     CDS             437825..438247
                     /locus_tag="O3Y_01910"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshP"
                     /protein_id="YP_005332257.1"
                     /db_xref="GI:379740288"
                     /db_xref="GeneID:11913355"
                     /translation="MLWSTTHRKQQGNALILVVFIIVVVGFVALVANRNQARSSQQLV
                     SMVLGTRAEMAARSALNIELSRFYQSNKSAGSCYTTSPQSMDFAGEGLAQCEATVSCL
                     SLGALDNGQAVYQLSATGRCQVGDWSLQRIIEVGVKSE"
     gene            438714..441998
                     /locus_tag="O3Y_01915"
                     /db_xref="GeneID:11913356"
     CDS             438714..441998
                     /locus_tag="O3Y_01915"
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshQ"
                     /protein_id="YP_005332258.1"
                     /db_xref="GI:379740289"
                     /db_xref="GeneID:11913356"
                     /translation="MGSGATLVLSSGDYWIESLQLNQGGEVVVDGDVRLFIRNNSDWN
                     SAQINVSGSGNLTIVGYNNITLNQSNQVKAYLYVGGTLTLHNTSVINGRVTSRRLFME
                     ANTEINQNEQQGYACFTDDFNRSSLGQNWIPYTSSGNFTPSIISNRMRLTEAITNQAT
                     AVTYQRIFPAAGNLVTVEFDYYAWANLTGNGADGVSVIFSDATVTPRTGGFGGSLGYA
                     QRTDTNPDTPGFAGGWLGVGLDEWGNYSNATEGRQGGPGFRQQAVAIRGSESANYQYL
                     VGTAANLNPKLDVRRTCQWWGCSFSGAGPGHRYFITIDSRSGGGVWVRVDRSVNGTMQ
                     TVIDWHNVLSNPNQGATPADFLLSLAGSTGASVNNHEIENFKVCALKSRPVGQLIDHF
                     RFTLPQQGLTCSASEVQIKACANDNCSQLYTDPVTATLSPNSAPSATGGWLGGSQVNF
                     NNGIATAQLRRNSVGNVSVNVLGSTPASKPFQVNLCSYTNNPNSYSTANCTVNFADSG
                     FIVDVPNAYANQTVTGTIKAVRKDNASQQCLPSFGNVQKSVAFWSEYLNPTANNSGFQ
                     SVSVGVNGTPIGQSANNATSISLNFNQNGEASFPISYREVGSLALHARFTGSGDEQDL
                     LLEGQDSFIRVPRALVLSANNPYNPTHPNGQCSAENISCNVFARADENFDLIIRAVVA
                     APIEDNDFTNNLTAYNYQQQNIALQHTLVQPSAGQSGVLGVNEYTHLLGGTTTIAQKV
                     SEVGVFDFSLFAPTHYLGLDLASANLPIAVTSTGSIGRFIPAYFSVSPMSNVTLDAAC
                     KTGNAFSYLGQPFEYSNSPGLYLQPKSANNADTQNYLIDPWWRYNNQWNGRTYSDSAN
                     GVNLGFDNLQTSPISRQALNNSGIVLNGERVWYQKPLQPKPVFNSAFDLTLNASNLTD
                     QDGVCYRQNASSPCLGYTFSHIDGAMPLYWGKLVIQDVYGPETQASEQPIYVEHFTNN
                     GFVRTIEDSCTALPAITGFTLQSDPNNNGYTVLTTGVAVPPQVLAEHSAANLNSGQRA
                     IRFSAPGAGALGVIDSVLDLNAHNLLWLAEDKDGDNNFDQTTQGRAQFGLYRGSDRVI
                     WWRESN"
     misc_feature    439062..439850
                     /locus_tag="O3Y_01915"
                     /note="legume lectins; Region: lectin_L-type; cl14058"
                     /db_xref="CDD:265423"
     misc_feature    order(439062..439064,439068..439070,439101..439103,
                     439203..439205,439212..439214,439527..439529,
                     439641..439643,439677..439679,439683..439688,
                     439734..439736)
                     /locus_tag="O3Y_01915"
                     /note="homotetramer interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:173886"
     misc_feature    order(439062..439070,439101..439103,439203..439205,
                     439209..439211)
                     /locus_tag="O3Y_01915"
                     /note="homodimer interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:173886"
     misc_feature    order(439290..439292,439803..439805)
                     /locus_tag="O3Y_01915"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:173886"
     misc_feature    order(439425..439427,439431..439433,439503..439505)
                     /locus_tag="O3Y_01915"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:173886"
     gene            442166..443209
                     /locus_tag="O3Y_01920"
                     /db_xref="GeneID:11913357"
     CDS             442166..443209
                     /locus_tag="O3Y_01920"
                     /note="COG1077 Actin-like ATPase involved in cell
                     morphogenesis"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreB"
                     /protein_id="YP_005332259.1"
                     /db_xref="GI:379740290"
                     /db_xref="GeneID:11913357"
                     /translation="MFKKLRGMFSNDLSIDLGTANTLIYVKGQGIVLDEPSVVAIRQD
                     KGRGGKTVAAVGHAAKQMLGRTPGNISAIRPMKDGVIADFYVTEKMLQHFIRQVHDNS
                     VLKPSPRVLVCVPCGSTQVERRAIRESALGAGAREVYLIDEPMAAAIGAGLRVSEPTG
                     SMVIDIGGGTTEVAVISLNGVVYSSPVRIGGDRFDEAIINYVRRNYGSLIGEATAEKI
                     KHEIGSAYPGDDVQEIEVRGRNLAEGVPRSFTLNSNEILEALQEPLTGIVSAVMVALE
                     QCPPELASDISENGMVLTGGGALLKDLDRLLMEETGIPVVIADDPLTCVARGGGKALE
                     MIDMHGGDLFSEE"
     misc_feature    442181..443200
                     /locus_tag="O3Y_01920"
                     /note="rod shape-determining protein MreB; Provisional;
                     Region: PRK13927"
                     /db_xref="CDD:237562"
     misc_feature    442202..443176
                     /locus_tag="O3Y_01920"
                     /note="MreB and similar proteins; Region: MreB_like;
                     cd10225"
                     /db_xref="CDD:212668"
     misc_feature    order(442211..442213,442217..442228,442400..442402,
                     442592..442594,442658..442660,442664..442675,
                     442736..442741,442811..442813,442820..442825,
                     443048..443056,443060..443065,443129..443131,
                     443138..443140)
                     /locus_tag="O3Y_01920"
                     /note="nucleotide binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:212668"
     misc_feature    order(442211..442213,442658..442660)
                     /locus_tag="O3Y_01920"
                     /note="Mg binding site [ion binding]; other site"
                     /db_xref="CDD:212668"
     misc_feature    order(442289..442291,442349..442351,442373..442375,
                     442637..442639,442643..442645,442703..442705,
                     442799..442801,442805..442807,442874..442876,
                     442898..442900,442907..442909,442997..442999,
                     443006..443008,443102..443104,443174..443176)
                     /locus_tag="O3Y_01920"
                     /note="putative protofilament interaction site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:212668"
     misc_feature    order(442619..442624,442646..442648,443024..443032,
                     443105..443107,443111..443113,443120..443122)
                     /locus_tag="O3Y_01920"
                     /note="RodZ interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212668"
     gene            443266..444156
                     /locus_tag="O3Y_01925"
                     /db_xref="GeneID:11913358"
     CDS             443266..444156
                     /locus_tag="O3Y_01925"
                     /note="COG1792 Cell shape-determining protein"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="YP_005332260.1"
                     /db_xref="GI:379740291"
                     /db_xref="GeneID:11913358"
                     /translation="MKPIFGRGPSLQLRLFFAVMLSASLMLADSRLGAFSHVRFLLNS
                     LVAPIQYAADLPRVLFDDFYDSISSHQQLRENNQLLKREVLTLKSNLLLLEQYKEENQ
                     RLRKLLGSSFLRDEKKVVTEVMAVDTSPYRHQVVIDKGRVDGVYEGQPIINEKGIVGQ
                     VTFVAAHNSRVLLLIDPNTAIPVQNIRNDIRVIASGNGQTDQIQLEHIPTSTDIEVGD
                     MLVTSGLGGVYPEGYPVAIVSQVDKDTRREFASIKADPVVEFDRLRYLLLIWPNEDRL
                     QKVMQADPQVLLEEEANAQQ"
     misc_feature    443269..444090
                     /locus_tag="O3Y_01925"
                     /note="rod shape-determining protein MreC; Provisional;
                     Region: PRK13922"
                     /db_xref="CDD:237560"
     gene            444143..444631
                     /locus_tag="O3Y_01930"
                     /db_xref="GeneID:11913359"
     CDS             444143..444631
                     /locus_tag="O3Y_01930"
                     /note="COG2891 Cell shape-determining protein"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="YP_005332261.1"
                     /db_xref="GI:379740292"
                     /db_xref="GeneID:11913359"
                     /translation="MLSSDIKGRMVILASFLLALILQTIPWPGTLDLFRPPWLLLVCC
                     YWVLALPHRVNVGSALVMGLLWDLLLGSTLGIRGMMMSIIIYLVAMNFLVLRNMALWQ
                     QAIVIGLLSMGLEVLIFCGEYLIQNVTFNPLSLWSGVIACILWPWMFLLLRRVRRHWH
                     VK"
     misc_feature    444143..444628
                     /locus_tag="O3Y_01930"
                     /note="rod shape-determining protein MreD; Provisional;
                     Region: PRK11060"
                     /db_xref="CDD:182936"
     gene            444691..445191
                     /locus_tag="O3Y_01935"
                     /db_xref="GeneID:11913360"
     CDS             444691..445191
                     /locus_tag="O3Y_01935"
                     /note="COG0424 Nucleotide-binding protein implicated in
                     inhibition of septum formation"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf-like protein"
                     /protein_id="YP_005332262.1"
                     /db_xref="GI:379740293"
                     /db_xref="GeneID:11913360"
                     /translation="MGYQFEVVVPNVEEKRAAAESPAQYVERLSRDKALAGAALVAAE
                     AVVIGSDTIVVKDQQVLEKPRDFADAKRMLLKLSGSQHQVMTGVSVTCRGITHSVVVT
                     TEVWFKTLSEQEIEAYWQSGEPCDKAGSYGIQGLGGRFVTRIEGSYHAVVGLPLYETD
                     QLLHKF"
     misc_feature    444691..445179
                     /locus_tag="O3Y_01935"
                     /note="Nucleotide binding protein Maf. Maf has been
                     implicated in inhibition of septum formation in
                     eukaryotes, bacteria and archaea, but homologs in
                     B.subtilis and S.cerevisiae are nonessential for cell
                     division. Maf has been predicted to be a nucleotide-
                     or...; Region: Maf; cd00555"
                     /db_xref="CDD:238310"
     misc_feature    order(444730..444732,444787..444789,444841..444843,
                     444877..444879)
                     /locus_tag="O3Y_01935"
                     /note="active site"
                     /db_xref="CDD:238310"
     misc_feature    order(444769..444771,444973..444990)
                     /locus_tag="O3Y_01935"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238310"
     gene            445217..446686
                     /locus_tag="O3Y_01940"
                     /db_xref="GeneID:11913361"
     CDS             445217..446686
                     /locus_tag="O3Y_01940"
                     /note="COG1530 Ribonucleases G and E"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="YP_005332263.1"
                     /db_xref="GI:379740294"
                     /db_xref="GeneID:11913361"
                     /translation="MSAELLLNVTPSETRVAMIEGGILQEIHIEREAKRGIVGNIYKG
                     KVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAESEKQQFQVRDISELVRQGQD
                     IVVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKKIVSH
                     YCDEHGGFIIRTAAEGANEKELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQR
                     ILRDFVGTELTKILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEI
                     QRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQ
                     LRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKR
                     TRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVAD
                     TLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDVVMM"
     misc_feature    445217..446683
                     /locus_tag="O3Y_01940"
                     /note="ribonuclease G; Provisional; Region: PRK11712"
                     /db_xref="CDD:183285"
     misc_feature    445310..445600
                     /locus_tag="O3Y_01940"
                     /note="S1_RNase_E: RNase E and RNase G, S1-like
                     RNA-binding domain. RNase E is an essential
                     endoribonuclease in the processing and degradation of RNA.
                     In addition to its role in mRNA degradation, RNase E has
                     also been implicated in the processing of rRNA, and...;
                     Region: S1_RNase_E; cd04453"
                     /db_xref="CDD:239900"
     misc_feature    order(445343..445345,445508..445510,445520..445522)
                     /locus_tag="O3Y_01940"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:239900"
     misc_feature    order(445415..445417,445541..445543,445550..445552,
                     445559..445564,445592..445594)
                     /locus_tag="O3Y_01940"
                     /note="oligonucleotide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:239900"
     misc_feature    445586..446398
                     /locus_tag="O3Y_01940"
                     /note="Ribonuclease E/G family; Region: RNase_E_G;
                     pfam10150"
                     /db_xref="CDD:255792"
     gene            446735..450574
                     /locus_tag="O3Y_01945"
                     /db_xref="GeneID:11913362"
     CDS             446735..450574
                     /locus_tag="O3Y_01945"
                     /note="COG3164 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332264.1"
                     /db_xref="GI:379740295"
                     /db_xref="GeneID:11913362"
                     /translation="MWLLVSLLIVLALAVTALRILLPQMNRFQAEIQHWLNQNSSVQV
                     AIADVQGYWRNTHPSLSLQTLQAHWPDSNDIQLNAASVEIEFDLLQSLWQRQPVVADL
                     TVNGLVLDLRAIDWLALEQNPNPKQSRQGRVVKQLDDLLLRQLDDFTLKNSAILYRTF
                     AGDLRQLDIEKLRWQNQGLRHFAEGVVSIAGININSLLVSANFIDHGSLRDVSGDFYV
                     SADKVRVLPWLTRYLKDQTGIQKGQVSLNAWATLEHNQPKDGYVEFKPSELVWQNGEQ
                     THELLLESGIVELKPTEKGWQVNAHSLRLRSDDELWPLLDVAMDWQPDEWRLNLSQLN
                     IENLLPLAKLIPESQTLNHWLTTLKPKGTLEDVRIAKGATLESLRYSASLIDGGIAQW
                     ELLPQVNALQAQIQGSPSKALIKASMVDDVLPYGEVFQAPLNIRQGAVNLVWQQEQYG
                     WSLWSDKVTVATPDLQALGAFRLDFPDDASPFLSFYAEADLFNAGETWRYLPTLALGR
                     ELTDYLSTAIQAGQVNTAKLIWYGALDQFPYRMHNGVFQAWVGLKEAKFAFDTAWPPI
                     TDLQLDLLFENDAMYLDSRSATLMEVSAERITGRIPELAELGHIEIEAVASAQQGNAI
                     RNYMMATPLVDSVGAALTTIQVKGPVRSEFQLNIPFHSGAEPRAWGFAELSNNAVDID
                     TPPMSLTSVSGKIEFDNDRVSAAGLDARLLKQPVSIDFKGEDAKRGYAVGIDMVGDWE
                     VKPLIPFVGERWLSRVKGHAPWQASVDIQLNDVGFTYQLDGKADLRGLESRYPFPLKK
                     ALKVKGQALLQASGNQEMVSARLQLPQAKYQAEIDLTPKVPVLKATNLVLGQGSFKIS
                     PVVGHHVQLRSQAFNLDDWLSILNEKPAPKSRKSKLASLNTPAFPMPERVDAAVKELT
                     FAGLDWHDVDLNARRKDLGWLLNLDSQEIKGQANYIEPYDLSIALERLHLFLPQLEAG
                     EEALLVDLDRQKLPLITDFDRKFHQWMPNLTLTIKDFWLQGYKIGQANVDFQRQGDTL
                     LWKSIDFTSGTNQLHVNGTWTLTDTQSRTQMNLDMKGDNNSDLMARFGINSGIQRAPF
                     EITASTQWDGAPWSMQVNTLQGKVDTKLGKGVISDVSGAARLLGLFSLDSIIRKMQLD
                     FSDVFDKGMAFDSISGSGELSQGIFVTNNIKMDAVAGEMTIKGLADLNTRTVDAEVNF
                     VPDITSGIPVLTAFAVTPQTALYVLAITTVISPVVEVFTQVNYEVKGPLDSPTVKELS
                     RSKGEFKLPEKLRKLTE"
     misc_feature    446735..450538
                     /locus_tag="O3Y_01945"
                     /note="TIGR02099 family protein; Region: TIGR02099"
                     /db_xref="CDD:233726"
     misc_feature    448205..449071
                     /locus_tag="O3Y_01945"
                     /note="Protein of unknown function; Region: DUF3971;
                     pfam13116"
                     /db_xref="CDD:257507"
     misc_feature    449780..450505
                     /locus_tag="O3Y_01945"
                     /note="AsmA-like C-terminal region; Region: AsmA_2;
                     pfam13502"
                     /db_xref="CDD:257822"
     gene            450583..451410
                     /locus_tag="O3Y_01950"
                     /db_xref="GeneID:11913363"
     CDS             450583..451410
                     /locus_tag="O3Y_01950"
                     /note="COG0388 Predicted amidohydrolase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332265.1"
                     /db_xref="GI:379740296"
                     /db_xref="GeneID:11913363"
                     /translation="MQRVGLVQMTSGPEISRNLTYLKQEVAKLAQQGAQWIVTPENAL
                     LLGNREQYHQQAESLDHGPVQHALASLAKEYGVWLLIGSMPIRHAEGVTTSSLLWNAQ
                     GERVAVYDKLHMFDVDVADGHQRYRESETFTPGQQVVVTSTPFGALGLSICYDVRFPH
                     LYADLRRQGAQILLVPAAFTAVTGQAHWEVLLRARAIETQCWVIAVGQTGHHPCGRET
                     WGHSMVISPWGEVIANLGAEVQSKVVEFDLATLDSVRRAMPITQHTRFTHQLIENTH"
     misc_feature    450589..451377
                     /locus_tag="O3Y_01950"
                     /note="Nit1, Nit 2, and related proteins, and the
                     Nit1-like domain of NitFhit (class 10 nitrilases); Region:
                     nit; cd07572"
                     /db_xref="CDD:143596"
     misc_feature    order(450703..450705,450862..450864,450913..450915,
                     450925..450927,450964..450966,451039..451044,
                     451048..451053,451114..451116)
                     /locus_tag="O3Y_01950"
                     /note="putative active site [active]"
                     /db_xref="CDD:143596"
     misc_feature    order(450703..450705,450913..450915,451039..451041)
                     /locus_tag="O3Y_01950"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:143596"
     misc_feature    order(450916..450921,450982..450990,451042..451044,
                     451051..451065,451069..451074,451138..451143,
                     451150..451155,451159..451167,451171..451176,
                     451264..451266,451354..451359,451366..451371,
                     451375..451377)
                     /locus_tag="O3Y_01950"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143596"
     gene            451410..452855
                     /locus_tag="O3Y_01955"
                     /db_xref="GeneID:11913364"
     CDS             451410..452855
                     /locus_tag="O3Y_01955"
                     /note="COG0312 Predicted Zn-dependent proteases and their
                     inactivated homologs"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD protein"
                     /protein_id="YP_005332266.1"
                     /db_xref="GI:379740297"
                     /db_xref="GeneID:11913364"
                     /translation="MTMNQIETALLAPAGLTEQDIADTLSSIATRQIDYADIYFQSSW
                     HESLVLEDSIIKDGSFNIDCGVGVRAVSGEKTGFAYSDQIQLEGLKQSAIAARGIAQQ
                     GQNLTVQAFKRAQHPAFYGAHNPLESWEKQQKTELLKQLDAYIRTKEPLITEVSVSLS
                     GVHEQILVAATDGTYAGDIRPLVRLSISVLAQKGDRRERGSAGGGGRFGYDYFLQEEA
                     GQKIAFSFADEAIRQALVNLEAVAAPAGTMPVVLGSGWPGVLLHEAVGHGLEGDFNRK
                     GSSVFAGKVGKKVTSDLCTIVDDGTLKDLRGSLNVDDEGVSGQYNVLIEKGILKGYIQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLPGEHTPEEIIASVKKGIYAPNFG
                     GGQVDITSGKFVFSASEAYLIENGKITRPIKGATLIGSGIEAMQQVSMVGNDLALDRG
                     VGVCGKAGQSVPVGVGQPTLKLDALTVGGTE"
     misc_feature    451410..452849
                     /locus_tag="O3Y_01955"
                     /note="Putative modulator of DNA gyrase; Region:
                     PmbA_TldD; cl19356"
                     /db_xref="CDD:267709"
     gene            complement(452951..454174)
                     /locus_tag="O3Y_01960"
                     /db_xref="GeneID:11913365"
     CDS             complement(452951..454174)
                     /locus_tag="O3Y_01960"
                     /EC_number="3.5.3.6"
                     /note="COG2235 Arginine deiminase"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="YP_005332267.1"
                     /db_xref="GI:379740298"
                     /db_xref="GeneID:11913365"
                     /translation="MNRLYVGSEVGQLRRVLLNRPERALTHLTPSNCHELLFDDVLAV
                     EAAGVEHDAFANTLRTQDVEVLLLHDLLEETLAIPEARQWLLNTQISDFRFGPTFARE
                     LRHALNHLDDHHLTTLLLGGLAFSELHLESDSMLPKMRQPLDFVIEPLPNHLFTRDTS
                     CWVYGGVSLNPMMKPARQRETNHLRAIYRWHPIFAQHPFIHYFGIDDLHYDNANIEGG
                     DVLVIGKGAVLIGMSERTSPQGVENLAAALFKHGQASKVIAINLPKHRSCMHLDTVMT
                     HMDVDTFSVYPEVMRKDLPTWRLTPKGNNGDMRVEQVPSYLHAIEQALGVDYLKIITT
                     GGNSYEAEREQWNDANNVLTVKPGVVIGYERNVYTNEKYDKAGIKVLTIPGNELGRGR
                     GGARCMSCPIERDGI"
     misc_feature    complement(452954..454174)
                     /locus_tag="O3Y_01960"
                     /note="arginine deiminase; Provisional; Region: PRK01388"
                     /db_xref="CDD:234949"
     gene            454901..455323
                     /locus_tag="O3Y_01965"
                     /db_xref="GeneID:11913366"
     CDS             454901..455323
                     /locus_tag="O3Y_01965"
                     /note="COG3076 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase E inhibitor protein"
                     /protein_id="YP_005332268.1"
                     /db_xref="GI:379740299"
                     /db_xref="GeneID:11913366"
                     /translation="MSHQDDYLSVEELIEIQKEETRDIIQALLEDGSDPDALYEIEHH
                     LFAEDFDKLEKAAVEAFKMGFEVLEAEETEDEDGNKLLCFDATMQSALDAKLIDEQVE
                     KLVNLAEKFDIIYDGWGTYYEGEDALYSDEDEDEDDEH"
     misc_feature    454922..455287
                     /locus_tag="O3Y_01965"
                     /note="RNase E inhibitor protein; Provisional; Region:
                     PRK11191"
                     /db_xref="CDD:236876"
     gene            455470..456267
                     /locus_tag="O3Y_01970"
                     /db_xref="GeneID:11913367"
     CDS             455470..456267
                     /locus_tag="O3Y_01970"
                     /note="COG3250 Beta-galactosidase/beta-glucuronidase"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase/beta-glucuronidase"
                     /protein_id="YP_005332269.1"
                     /db_xref="GI:379740300"
                     /db_xref="GeneID:11913367"
                     /translation="MQLSLAGLWQLSPLTDLSIPQDDITFPAPLSAVLPKTLSEDDIA
                     QQEWHLMHDIEVDDDLLSFAAIDLVIEGIDYHAEVRLNGVALFDCDGSQAIYRKEIRS
                     LLKPGRNRFEILFLEVDEDGLLDEEESELCFLGEQDVPSYDQRMGIWKAPYLQCIRHL
                     RLTHVSTEQIWHHSGCELLVNLFFTTYSPGLVSAAVKFDGRTYQVPIDVRSDHASVLF
                     QVDAPKIYDVRHPRAEDLYLITVQLDGQVKRFRLGLSEAHCVSHFPL"
     gene            complement(456336..456719)
                     /locus_tag="O3Y_01975"
                     /db_xref="GeneID:11913368"
     CDS             complement(456336..456719)
                     /locus_tag="O3Y_01975"
                     /note="COG3205 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332270.1"
                     /db_xref="GI:379740301"
                     /db_xref="GeneID:11913368"
                     /translation="MKKTLSFAAIHFTIAFTVAYVLTGDVIIGSLIAMLEPMVNTVAF
                     YFHEKAWVKSAALQRFAGDPRIKTASFATIHFTVAFSVAYLLTGSWLVGGVMAMIEPS
                     INTCAYYFHEKVWQSKHAGHLGCAH"
     misc_feature    complement(456489..456719)
                     /locus_tag="O3Y_01975"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG3205"
                     /db_xref="CDD:225746"
     misc_feature    complement(<456372..456524)
                     /locus_tag="O3Y_01975"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG3205"
                     /db_xref="CDD:225746"
     gene            complement(456870..457307)
                     /locus_tag="O3Y_01980"
                     /db_xref="GeneID:11913369"
     CDS             complement(456870..457307)
                     /locus_tag="O3Y_01980"
                     /note="COG0589 Universal stress protein UspA and related
                     nucleotide-binding proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332271.1"
                     /db_xref="GI:379740302"
                     /db_xref="GeneID:11913369"
                     /translation="MYKHILVPVDLNEQGFADKAVQLAVWHAKHSNAEIHLLNVLPGI
                     HMSMVATYFPKDAAAQMKNDVRAQLKAFAEKHIAEEVVYKLHIAEGKPYATILDYAER
                     LGADLIVMPSHKRSRIDKVMLGSVASKVVENSPINVMVVKPQG"
     misc_feature    complement(456885..457298)
                     /locus_tag="O3Y_01980"
                     /note="Usp: Universal stress protein family. The universal
                     stress protein Usp is a small cytoplasmic bacterial
                     protein whose expression is enhanced when the cell is
                     exposed to stress agents. Usp enhances the rate of cell
                     survival during prolonged exposure to...; Region:
                     USP_Like; cd00293"
                     /db_xref="CDD:238182"
     misc_feature    complement(order(456927..456938,456966..456971,
                     456975..456980,457188..457190,457278..457286))
                     /locus_tag="O3Y_01980"
                     /note="Ligand Binding Site [chemical binding]; other site"
                     /db_xref="CDD:238182"
     gene            complement(457429..459993)
                     /locus_tag="O3Y_01985"
                     /db_xref="GeneID:11913370"
     CDS             complement(457429..459993)
                     /locus_tag="O3Y_01985"
                     /note="COG4666 TRAP-type uncharacterized transport system,
                     fused permease components"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332272.1"
                     /db_xref="GI:379740303"
                     /db_xref="GeneID:11913370"
                     /translation="MTQTTTPSQDVQEMVAQADTGARAPKGLPGRVLWFVPLCWSLFQ
                     LWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRDRIPLTDWLLALA
                     GSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPPLMMVAALFLL
                     YTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVLFGAMLERA
                     GAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIPLMKRVG
                     FPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISYIALI
                     YIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFGDA
                     ATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLV
                     WCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVS
                     GARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILG
                     MGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAF
                     AAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITA
                     MLLFSAATQGWWLTKTKWWEVVALLVLTFTFFRPGFWWDMVYPAQVMYAGTKLEQIVE
                     QAPVGQPIQMIVAGENLKGEYTSKTVQLPFEDRAVSAQERIASMGLTLLNDKNRMLVE
                     MVEFGSPAEAAGIDFDWEIRSVVVDSDRPMKEWVFLPAILLTLLLAWNQKRRIKKA"
     misc_feature    complement(457759..459978)
                     /locus_tag="O3Y_01985"
                     /note="TRAP-type uncharacterized transport system, fused
                     permease components [General function prediction only];
                     Region: COG4666"
                     /db_xref="CDD:227012"
     misc_feature    complement(<458860..459375)
                     /locus_tag="O3Y_01985"
                     /note="Anion permease ArsB/NhaD.  These permeases have
                     been shown to translocate sodium, arsenate, antimonite,
                     sulfate and organic anions across biological membranes in
                     all three kingdoms of life.  A typical anion permease
                     contains 8-13 transmembrane helices...; Region:
                     ArsB_NhaD_permease; cl21473"
                     /db_xref="CDD:271893"
     misc_feature    complement(457432..457983)
                     /locus_tag="O3Y_01985"
                     /note="Domain of unknown function (DUF3394); Region:
                     DUF3394; pfam11874"
                     /db_xref="CDD:152310"
     gene            complement(460164..461132)
                     /locus_tag="O3Y_01990"
                     /db_xref="GeneID:11913371"
     CDS             complement(460164..461132)
                     /locus_tag="O3Y_01990"
                     /note="COG2358 TRAP-type uncharacterized transport system,
                     periplasmic component"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332273.1"
                     /db_xref="GI:379740304"
                     /db_xref="GeneID:11913371"
                     /translation="MSLPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGG
                     AICKLVNKDRKDHNIRCSVESTGGSIYNVNTIRSGELDFGIVQSDWQYHGYNGTSEFA
                     EQGPYKKLRAVFSMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRATMQVVMD
                     AFGWNNDSFKLAAELKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKLVPAT
                     GPEIEKIVANNPYYAYSVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAV
                     FENFDTFTRLHPAFANLKKEDMVTAGNSIPLHPGAVKYYKEAGLIK"
     misc_feature    complement(<460515..461132)
                     /locus_tag="O3Y_01990"
                     /note="ABC-type nitrate/sulfonate/bicarbonate transport
                     systems, periplasmic components [Inorganic ion transport
                     and metabolism]; Region: TauA; COG0715"
                     /db_xref="CDD:223787"
     misc_feature    complement(460188..461054)
                     /locus_tag="O3Y_01990"
                     /note="Substrate binding domain of putative TAXI proteins
                     of the tripartite ATP-independent periplasmic
                     transporters; the type 2 periplasmic binding protein fold;
                     Region: PBP2_TAXI_TRAP_like_3; cd13568"
                     /db_xref="CDD:270286"
     misc_feature    complement(order(460548..460553,460680..460688,
                     460776..460778,460872..460874,460926..460934,
                     461016..461024,461034..461036))
                     /locus_tag="O3Y_01990"
                     /note="putative chemical substrate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270286"
     gene            complement(461456..461926)
                     /locus_tag="O3Y_01995"
                     /db_xref="GeneID:11913372"
     CDS             complement(461456..461926)
                     /locus_tag="O3Y_01995"
                     /note="COG1438 Arginine repressor"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="YP_005332274.1"
                     /db_xref="GI:379740305"
                     /db_xref="GeneID:11913372"
                     /translation="MRNVDKQDNLVRAFKALLKEERFGSQGDIVEALKNEGFDNINQS
                     KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTASSSLRELVLDVDYNNALVVIRTGP
                     GAAQLIARLLDSLGKSEGILGVVAGDDTIFITPTLDVPVKELFHSVCELFEYAG"
     misc_feature    complement(461459..461926)
                     /locus_tag="O3Y_01995"
                     /note="arginine repressor; Provisional; Region: PRK05066"
                     /db_xref="CDD:179922"
     misc_feature    complement(461702..461911)
                     /locus_tag="O3Y_01995"
                     /note="Arginine repressor, DNA binding domain; Region:
                     Arg_repressor; pfam01316"
                     /db_xref="CDD:250529"
     misc_feature    complement(461474..461686)
                     /locus_tag="O3Y_01995"
                     /note="Arginine repressor, C-terminal domain; Region:
                     Arg_repressor_C; pfam02863"
                     /db_xref="CDD:251575"
     gene            462254..463189
                     /locus_tag="O3Y_02000"
                     /db_xref="GeneID:11913373"
     CDS             462254..463189
                     /locus_tag="O3Y_02000"
                     /EC_number="1.1.1.37"
                     /note="COG0039 Malate/lactate dehydrogenases"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="YP_005332275.1"
                     /db_xref="GI:379740306"
                     /db_xref="GeneID:11913373"
                     /translation="MKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAA
                     DLSHIPTPVTIKGYAGEDPTPALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALA
                     EKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAA
                     LKDKDPGQVRVPVIGGHSGVTILPLLSQVEGVSFTDEEVAALTKRIQNAGTEVVEAKA
                     GGGSATLSMGQAACRFGLALVKALQGESDVVEYAYVEGEGEYAPFFAQPIKLGKNGVE
                     ALLDIGKLSAYEQAALDGMLDTLKGDIQIGVEFVK"
     misc_feature    462254..463186
                     /locus_tag="O3Y_02000"
                     /note="malate dehydrogenase; Provisional; Region:
                     PRK05086"
                     /db_xref="CDD:235340"
     misc_feature    462254..463183
                     /locus_tag="O3Y_02000"
                     /note="Glyoxysomal and mitochondrial malate
                     dehydrogenases; Region: MDH_glyoxysomal_mitochondrial;
                     cd01337"
                     /db_xref="CDD:133422"
     misc_feature    order(462278..462289,462353..462355,462479..462481,
                     462485..462490,462521..462523,462533..462535,
                     462542..462544,462602..462604,462608..462610,
                     462689..462691,462698..462700,462782..462784,
                     462920..462922,462932..462934)
                     /locus_tag="O3Y_02000"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:133422"
     misc_feature    order(462293..462295,462383..462388,462392..462400,
                     462707..462712,462719..462721,462878..462880,
                     462887..462889,462899..462904,462920..462931,
                     462938..462940)
                     /locus_tag="O3Y_02000"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:133422"
     misc_feature    order(462494..462496,462512..462514,462608..462610,
                     462710..462712,462782..462784,462881..462883)
                     /locus_tag="O3Y_02000"
                     /note="Substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133422"
     gene            463663..465069
                     /locus_tag="O3Y_02005"
                     /db_xref="GeneID:11913374"
     CDS             463663..465069
                     /locus_tag="O3Y_02005"
                     /note="COG0531 Amino acid transporters"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/ornithine antiporter"
                     /protein_id="YP_005332276.1"
                     /db_xref="GI:379740307"
                     /db_xref="GeneID:11913374"
                     /translation="MDKKLGLGSLTALVIGSMIGAGVFSLPQNMAAVASPLAVMIGWS
                     ITGIGMIFLALSFQYLAVNKPHVNSGVFGFAREGFGDFAGFCSAWGYWFSAMVANVSY
                     LVIVFSTLGLLFDTPDQIIFGSGNTWWSIGGASLLLWAVHSLVLRGVQTAALINLITT
                     MTKMVPLLLFIVSAIAAFNWSTFSLDFAGLHHISGADLLGQVKATMLITVWVFVGIEG
                     AVVVSSRARQRKDIGRATILGLLTALSIYVLVTLLSMGVIQVNQLAQYPNPSMAQVLT
                     TIIGPWGKYIIAVGLLISVCGAFLSWTVLASEAPFLAAKDKMFPRHFAKQNQAGSPVN
                     ALFLTTLCIQVSLILVRYTSSTYDSLLIFASEMILVPYFLVGAFTLKLALEQRDRGKL
                     LLIGFGATAYGLWLLYASGLHYLMLSTLLYVPGFAFYLKAKREQGVKAFCGREMVGAS
                     TLLLFAVGAAGMLWQGAW"
     misc_feature    463669..465063
                     /locus_tag="O3Y_02005"
                     /note="arginine-ornithine antiporter; Region:
                     arg_ornith_anti; TIGR03810"
                     /db_xref="CDD:163522"
     misc_feature    463690..>464487
                     /locus_tag="O3Y_02005"
                     /note="Spore germination protein; Region: Spore_permease;
                     cl17796"
                     /db_xref="CDD:266844"
     gene            complement(465218..466189)
                     /locus_tag="O3Y_02010"
                     /db_xref="GeneID:11913375"
     CDS             complement(465218..466189)
                     /locus_tag="O3Y_02010"
                     /note="COG0142 Geranylgeranyl pyrophosphate synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl-diphosphate synthase"
                     /protein_id="YP_005332277.1"
                     /db_xref="GI:379740308"
                     /db_xref="GeneID:11913375"
                     /translation="MDFKAIQALTANDMAKVNETIHAQLNSDVSLINQLGFYIISGGG
                     KRLRPLLAVLSAKALGYQGSHHTTAAAFIEFIHTATLLHDDVVDESDLRRGKATANAA
                     FGNAASVLVGDFIYTRSFQMMTELGSMKILKLMSDAVNVIAEGEVQQLMNCNDPDTTE
                     ASYMQVIYSKTARLFEAATQIGAILCDASPEVELAMQNYGKYLGTAFQLIDDVMDYTS
                     DGDEMGKNVGDDLAEGKPTLPLLYAMQHGNPEQAAMIREAIEKANGMSRLNEILAAME
                     QTGSLQYTIEKALHEADKAIAELAILPESEYKQALITLAHMAVNRSK"
     misc_feature    complement(465227..466111)
                     /locus_tag="O3Y_02010"
                     /note="Trans-Isoprenyl Diphosphate Synthases,
                     head-to-tail; Region: Trans_IPPS_HT; cd00685"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(465485..465487,465500..465502,
                     465515..465517,465545..465547,465554..465559,
                     465668..465670,465677..465682,465743..465745,
                     465752..465754,465908..465913,465926..465931,
                     465935..465943,465947..465955,465962..465964))
                     /locus_tag="O3Y_02010"
                     /note="substrate binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:173833"
     misc_feature    complement(465926..465955)
                     /locus_tag="O3Y_02010"
                     /note="chain length determination region; other site"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(465485..465487,465500..465502,
                     465515..465517,465545..465547,465554..465559,
                     465680..465682,465743..465745,465908..465913,
                     465926..465928,465935..465940))
                     /locus_tag="O3Y_02010"
                     /note="substrate-Mg2+ binding site; other site"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(465554..465559,465680..465682,
                     465908..465913,465926..465928,465935..465940))
                     /locus_tag="O3Y_02010"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(465680..465682,465743..465745,
                     465908..465913,465926..465928,465935..465940))
                     /locus_tag="O3Y_02010"
                     /note="aspartate-rich region 1; other site"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(465479..465493,465500..465517,
                     465533..465538,465878..465922))
                     /locus_tag="O3Y_02010"
                     /note="active site lid residues [active]"
                     /db_xref="CDD:173833"
     misc_feature    complement(order(465485..465487,465500..465502,
                     465515..465517,465545..465547,465554..465559))
                     /locus_tag="O3Y_02010"
                     /note="aspartate-rich region 2; other site"
                     /db_xref="CDD:173833"
     gene            466460..466771
                     /gene="rplU"
                     /locus_tag="O3Y_02015"
                     /db_xref="GeneID:11913376"
     CDS             466460..466771
                     /gene="rplU"
                     /locus_tag="O3Y_02015"
                     /note="COG0261 Ribosomal protein L21"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="YP_005332278.1"
                     /db_xref="GI:379740309"
                     /db_xref="GeneID:11913376"
                     /translation="MYAVFQSGGKQHRVSEGQTLRLEKLDVETGATVEFDKVLLVANG
                     EDIKVGAPLVEGGKVVAEVVQHGRGDKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIN
                     A"
     misc_feature    466460..466768
                     /gene="rplU"
                     /locus_tag="O3Y_02015"
                     /note="50S ribosomal protein L21; Validated; Region: rplU;
                     PRK05573"
                     /db_xref="CDD:235510"
     gene            466792..467052
                     /gene="rpmA"
                     /locus_tag="O3Y_02020"
                     /db_xref="GeneID:11913377"
     CDS             466792..467052
                     /gene="rpmA"
                     /locus_tag="O3Y_02020"
                     /note="COG0211 Ribosomal protein L27"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="YP_005332279.1"
                     /db_xref="GI:379740310"
                     /db_xref="GeneID:11913377"
                     /translation="MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTK
                     FHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE"
     misc_feature    466792..467040
                     /gene="rpmA"
                     /locus_tag="O3Y_02020"
                     /note="50S ribosomal protein L27; Validated; Region: rpmA;
                     PRK05435"
                     /db_xref="CDD:235464"
     gene            467275..468447
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /db_xref="GeneID:11913378"
     CDS             467275..468447
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="COG0536 Predicted GTPase"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase CgtA"
                     /protein_id="YP_005332280.1"
                     /db_xref="GI:379740311"
                     /db_xref="GeneID:11913378"
                     /translation="MKFVDEAVIKVQAGDGGNGVVSFWREKFVTNGGPDGGDGGDGGD
                     VYMVADENLNTLIDYRFQRFYEAERGKNGGGGNCTGKSGKDKELRVPVGTRAVDIHTN
                     EIIGEVAEHGKKVMIAKGGWHGLGNARFKSSVNRSPRQKTLGTKGELRDIRLELLLLA
                     DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVSVLPEKSFVVADIPGLI
                     EGAAEGAGLGIRFLKHLERCRVLLHMIDIMPADQSDPAHNALTIIDELEQYSEKLAKK
                     PRWLVFNKVDLMSEEEADEIIQNIIDALAWEGDYFKISAANRQGTKELCMKLAEFMDT
                     LPREAEEKTEAEKVDFTWDYNHKDGLAGREVITEDDDDWDDWDDEEDDGHVIYVRD"
     misc_feature    467275..468369
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="GTPase CgtA; Reviewed; Region: obgE; PRK12298"
                     /db_xref="CDD:237047"
     misc_feature    467281..467748
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="GTP1/OBG; Region: GTP1_OBG; pfam01018"
                     /db_xref="CDD:110047"
     misc_feature    467752..468267
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="Obg GTPase; Region: Obg; cd01898"
                     /db_xref="CDD:206685"
     misc_feature    467770..467793
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="G1 box; other site"
                     /db_xref="CDD:206685"
     misc_feature    order(467779..467796,468121..468126,468130..468132,
                     468214..468219)
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206685"
     misc_feature    467815..467862
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206685"
     misc_feature    467851..467853
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="G2 box; other site"
                     /db_xref="CDD:206685"
     misc_feature    467911..467922
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="G3 box; other site"
                     /db_xref="CDD:206685"
     misc_feature    order(467920..467943,467950..467988)
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206685"
     misc_feature    468121..468132
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="G4 box; other site"
                     /db_xref="CDD:206685"
     misc_feature    468214..468222
                     /gene="obgE"
                     /locus_tag="O3Y_02025"
                     /note="G5 box; other site"
                     /db_xref="CDD:206685"
     gene            468569..469330
                     /locus_tag="O3Y_02030"
                     /db_xref="GeneID:11913379"
     CDS             468569..469330
                     /locus_tag="O3Y_02030"
                     /note="COG2966 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332281.1"
                     /db_xref="GI:379740312"
                     /db_xref="GeneID:11913379"
                     /translation="MESKQRAVSRLIAQAGQMLLAHGAESTLVGDIMRRMGLASGMSE
                     VEVSLSASSLVVTTVYKEHCITTARRSPDRGINMRVVTQIQRICIMMEKGILDHSLAQ
                     RKLNHISPERYNRWLVVVMIGLSCAAFSRLAGGDWMVFLITLIASSVGMIVRQEIGHR
                     QFNPLINFAATAFVTSVISAQAVIYQLGNKPTIVMASSVLMLVPGFPLINAVADMLKG
                     YINMGIARFVMASLLTLATALGIVAAMSITGIWGW"
     misc_feature    468572..469288
                     /locus_tag="O3Y_02030"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG2966"
                     /db_xref="CDD:225514"
     misc_feature    468611..469183
                     /locus_tag="O3Y_02030"
                     /note="Protein of unknown function (DUF1212); Region:
                     DUF1212; pfam06738"
                     /db_xref="CDD:253886"
     gene            469318..469803
                     /locus_tag="O3Y_02035"
                     /db_xref="GeneID:11913380"
     CDS             469318..469803
                     /locus_tag="O3Y_02035"
                     /note="COG3610 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005332282.1"
                     /db_xref="GI:379740313"
                     /db_xref="GeneID:11913380"
                     /translation="MGVVMLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCAL
                     GGALGHGSRYLMMHFGVPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVP
                     GVFAFKAMIALVEINHVGFSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPI
                     I"
     misc_feature    469330..469794
                     /locus_tag="O3Y_02035"
                     /note="Protein of unknown function (DUF3815); Region:
                     DUF3815; cl01118"
                     /db_xref="CDD:260795"
     gene            469816..470313
                     /locus_tag="O3Y_02040"
                     /db_xref="GeneID:11913381"
     CDS             469816..470313
                     /locus_tag="O3Y_02040"
                     /note="COG0262 Dihydrofolate reductase"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="YP_005332283.1"
                     /db_xref="GI:379740314"
                     /db_xref="GeneID:11913381"
                     /translation="MMISMIAAMADQRIIGKDNQMPWHLPADFAWFKRCTLGKPVVMG
                     RKTYQSIGRPLPGRHNIVISRDASLQIEGVDVVTSIEAALAKAGEVDEVMIIGGGSLY
                     AACLPMAHKLYITEIHAKLDGDTQFPEWGSDWLERSREHYPADEKNAYGMDFVIFERQ
                     YPLPT"
     misc_feature    469822..470289
                     /locus_tag="O3Y_02040"
                     /note="Dihydrofolate reductase (DHFR). Reduces
                     7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
                     as a cofactor. This is an essential step in the
                     biosynthesis of deoxythymidine phosphate since
                     5,6,7,8-tetrahydrofolate is required to regenerate 5;
                     Region: DHFR; cd00209"
                     /db_xref="CDD:238127"
     misc_feature    order(469831..469833,469882..469884,469897..469899,
                     469987..469989,470101..470103,470119..470121,
                     470158..470160)
                     /locus_tag="O3Y_02040"
                     /note="folate binding site [chemical binding]; other site"
                     /db_xref="CDD:238127"
     misc_feature    order(469837..469839,469858..469860,469948..469956,
                     470008..470010,470104..470115)
                     /locus_tag="O3Y_02040"
                     /note="NADP+ binding site [chemical binding]; other site"
                     /db_xref="CDD:238127"
     gene            complement(470462..471271)
                     /gene="apaH"
                     /locus_tag="O3Y_02045"
                     /db_xref="GeneID:11913382"
     CDS             complement(470462..471271)
                     /gene="apaH"
                     /locus_tag="O3Y_02045"
                     /EC_number="3.6.1.41"
                     /note="COG0639 Diadenosine tetraphosphatase and related
                     serine/threonine protein phosphatases"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenosine tetraphosphatase"
                     /protein_id="YP_005332284.1"
                     /db_xref="GI:379740315"
                     /db_xref="GeneID:11913382"
                     /translation="MANYIVGDIQGCFDELQQLLKQAEFNSQLDTLWFAGDLVARGPK
                     SLETLRFVYQLGDAARVVLGNHDLHLLSVALGHHSAKRRDQTQAVLDAPDAAPLLDWL
                     RQQPLLAEHQEFVLCHAGISPQWDLATARQAAQEVESVLRSPEWSTLIEQMYSDQPDA
                     WHPTLQGIDRLRYIVNAFTRMRFCFPDGRLDMQCKLPPKEVTDGSLLPWFQLPQRIAL
                     EKTVIFGHWAALEGYVSETVIGLDTGCVWGGTLTMLRWEDKHYFSQAALPA"
     misc_feature    complement(470465..471271)
                     /gene="apaH"
                     /locus_tag="O3Y_02045"
                     /note="diadenosine tetraphosphatase; Reviewed; Region:
                     apaH; PRK00166"
                     /db_xref="CDD:234673"
     misc_feature    complement(470501..471265)
                     /gene="apaH"
                     /locus_tag="O3Y_02045"
                     /note="Escherichia coli ApaH and related proteins,
                     metallophosphatase domain; Region: MPP_ApaH; cd07422"
                     /db_xref="CDD:163665"
     misc_feature    complement(order(470531..470533,470546..470548,
                     470594..470596,470918..470920,471074..471079,
                     471149..471154,471161..471163,471242..471244,
                     471248..471250))
                     /gene="apaH"
                     /locus_tag="O3Y_02045"
                     /note="active site"
                     /db_xref="CDD:163665"
     misc_feature    complement(order(470594..470596,470918..470920,
                     471077..471079,471161..471163,471242..471244,
                     471248..471250))
                     /gene="apaH"
                     /locus_tag="O3Y_02045"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:163665"
     gene            complement(471282..471662)
                     /gene="apaG"
                     /locus_tag="O3Y_02050"
                     /db_xref="GeneID:11913383"
     CDS             complement(471282..471662)
                     /gene="apaG"
                     /locus_tag="O3Y_02050"
                     /note="COG2967 Uncharacterized protein affecting Mg2+/Co2+
                     transport"
                     /codon_start=1
                     /transl_table=11
                     /product="CO2+/MG2+ efflux protein ApaG"
                     /protein_id="YP_005332285.1"
                     /db_xref="GI:379740316"
                     /db_xref="GeneID:11913383"
                     /translation="MDVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTV
                     QLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLM
                     IDEQGESFTVEIEPFRLAVPHVLN"
     misc_feature    complement(471285..471662)
                     /gene="apaG"
                     /locus_tag="O3Y_02050"
                     /note="CO2+/MG2+ efflux protein ApaG; Reviewed; Region:
                     apaG; PRK05461"
                     /db_xref="CDD:180098"
     gene            complement(471734..472549)
                     /gene="ksgA"
                     /locus_tag="O3Y_02055"
                     /db_xref="GeneID:11913384"
     CDS             complement(471734..472549)
                     /gene="ksgA"
                     /locus_tag="O3Y_02055"
                     /EC_number="2.1.1.-"
                     /note="COG0030 Dimethyladenosine transferase (rRNA
                     methylation)"
                     /codon_start=1
                     /transl_table=11
                     /product="KsgA/Dim1 family 16S ribosomal RNA
                     methyltransferase"
                     /protein_id="YP_005332286.1"
                     /db_xref="GI:379740317"
                     /db_xref="GeneID:11913384"
                     /translation="MRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEI
                     GPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVK
                     PNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLT
                     VMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFN
                     QRRKTVRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWLDATHKTHA"
     misc_feature    complement(471749..472549)
                     /gene="ksgA"
                     /locus_tag="O3Y_02055"
                     /note="16S ribosomal RNA methyltransferase KsgA/Dim1
                     family protein; Reviewed; Region: ksgA; PRK00274"
                     /db_xref="CDD:234708"
     gene            complement(472563..473555)
                     /gene="pdxA"
                     /locus_tag="O3Y_02060"
                     /db_xref="GeneID:11913385"
     CDS             complement(472563..473555)
                     /gene="pdxA"
                     /locus_tag="O3Y_02060"
                     /EC_number="1.1.1.262"
                     /note="COG1995 Pyridoxal phosphate biosynthesis protein"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="YP_005332287.1"
                     /db_xref="GI:379740318"
                     /db_xref="GeneID:11913385"
                     /translation="MSSKRIIVTAGEPAGIGPDLVLALSAQDWPHQLVVCADKALLAQ
                     RATQLGIQVKLLDYQRDNPVQAQQAGTLLVEHIPLAEPVVAGQLNPANGHYVLKTLER
                     AAKGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSKTPLVVMMLATEGLRTA
                     LVTTHLPLAEVPQAITCERLEQIVHILHKDLVEKFAIAEPKIYVCGLNPHAGEDGVLG
                     MDEIETITPTLQRLREQYGMQLVGPLPADTIFSEKYLQQADAVLGMYHDQVLPVLKYK
                     GFGRSVNITLGLPFIRTSVDHGTALDLAGTGQADAGSFWTALAYAIELVDKKAQ"
     misc_feature    complement(472566..473555)
                     /gene="pdxA"
                     /locus_tag="O3Y_02060"
                     /note="4-hydroxythreonine-4-phosphate dehydrogenase;
                     Reviewed; Region: pdxA; PRK00232"
                     /db_xref="CDD:234696"
     gene            complement(473545..474840)
                     /locus_tag="O3Y_02065"
                     /db_xref="GeneID:11913386"
     CDS             complement(473545..474840)
                     /locus_tag="O3Y_02065"
                     /note="COG0760 Parvulin-like peptidyl-prolyl isomerase"
                     /codon_start=1
                     /transl_table=11
                     /product="survival protein SurA"
                     /protein_id="YP_005332288.1"
                     /db_xref="GI:379740319"
                     /db_xref="GeneID:11913386"
                     /translation="MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDV
                     DSALKTIKANAKQNKQPLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAI
                     KEIAKNNQQTQEQLIASVAQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVD
                     TLAELLAQETDATVQYKISHIQLRVDDGQDKSTAETLANKLVNDLRNGADFAQMAYAY
                     SKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLE
                     TVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAA
                     QKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALK
                     NKAYRILFNRKFNEEASAWLQELRASAFVEVLKDEKDEQ"
     misc_feature    complement(473569..474777)
                     /locus_tag="O3Y_02065"
                     /note="peptidyl-prolyl cis-trans isomerase SurA;
                     Provisional; Region: PRK10770"
                     /db_xref="CDD:236758"
     misc_feature    complement(474409..474762)
                     /locus_tag="O3Y_02065"
                     /note="SurA N-terminal domain; Region: SurA_N; pfam09312"
                     /db_xref="CDD:150092"
     misc_feature    complement(474028..474303)
                     /locus_tag="O3Y_02065"
                     /note="PPIC-type PPIASE domain; Region: Rotamase;
                     pfam00639"
                     /db_xref="CDD:250020"
     misc_feature    complement(473701..473982)
                     /locus_tag="O3Y_02065"
                     /note="PPIC-type PPIASE domain; Region: Rotamase;
                     pfam00639"
                     /db_xref="CDD:250020"
     gene            complement(474893..477244)
                     /locus_tag="O3Y_02070"
                     /db_xref="GeneID:11913387"
     CDS             complement(474893..477244)
                     /locus_tag="O3Y_02070"
                     /note="COG1452 Organic solvent tolerance protein OstA"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly outer membrane complex protein
                     LptD"
                     /protein_id="YP_005332289.1"
                     /db_xref="GI:379740320"
                     /db_xref="GeneID:11913387"
                     /translation="MSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVN
                     QPEPTNPGQQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVA
                     EGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEI
                     EDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDT
                     RKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDF
                     GAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSG
                     VGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAP
                     ETMKYLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYY
                     QQDLDKTTDAKLEESVTRVIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKY
                     QDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAF
                     GQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQL
                     GNSTLEYRVASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSR
                     KWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIY
                     ENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN"
     misc_feature    complement(474908..477244)
                     /locus_tag="O3Y_02070"
                     /note="LPS assembly outer membrane complex protein LptD;
                     Provisional; Region: PRK03761"
                     /db_xref="CDD:235158"
     misc_feature    complement(476678..477076)
                     /locus_tag="O3Y_02070"
                     /note="OstA-like protein; Region: OstA; cl21541"
                     /db_xref="CDD:271961"
     misc_feature    complement(475193..476356)
                     /locus_tag="O3Y_02070"
                     /note="Organic solvent tolerance protein; Region: OstA_C;
                     pfam04453"
                     /db_xref="CDD:252606"
     gene            477403..478257
                     /gene="djlA"
                     /locus_tag="O3Y_02075"
                     /db_xref="GeneID:11913388"
     CDS             477403..478257
                     /gene="djlA"
                     /locus_tag="O3Y_02075"
                     /note="COG1076 DnaJ-domain-containing proteins 1"
                     /codon_start=1
                     /transl_table=11
                     /product="Dna-J like membrane chaperone protein"
                     /protein_id="YP_005332290.1"
                     /db_xref="GI:379740321"
                     /db_xref="GeneID:11913388"
                     /translation="MHIFGKILGAFFGFLFGGPFGAIFGIFLGHQFDKARRLNQAGFQ
                     SGTFGAGPSQAERQEEFFKSAFSVMGHVAKAKGQVTKEEIQLATIMMDRMNLTLEQKR
                     AAQDAFRDGKESDFPLEQVLERVKIATGGRFDLLQFFLELQVSSAFADGDVHPSERQV
                     LHRIARGLGFSSEQLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPSSRHQLAD
                     AYEVLGVSESASAQEVKRAYRKLMNEHHPDKLMAKGLPPEMMNVAKEKSQQIQHAYEL
                     IRKEKGIK"
     misc_feature    477403..478254
                     /gene="djlA"
                     /locus_tag="O3Y_02075"
                     /note="Dna-J like membrane chaperone protein; Provisional;
                     Region: djlA; PRK09430"
                     /db_xref="CDD:236512"
     misc_feature    477592..477909
                     /gene="djlA"
                     /locus_tag="O3Y_02075"
                     /note="N-terminal tellurium resistance protein terB-like
                     domain of heat shock DnaJ-like proteins; Region:
                     terB_like_DjlA; cd07316"
                     /db_xref="CDD:143585"
     misc_feature    order(477628..477630,477649..477651,477850..477852,
                     477871..477873)
                     /gene="djlA"
                     /locus_tag="O3Y_02075"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:143585"
     misc_feature    478054..478227
                     /gene="djlA"
                     /locus_tag="O3Y_02075"
                     /note="DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; Region: DnaJ;
                     cd06257"
                     /db_xref="CDD:99751"
     misc_feature    order(478138..478146,478192..478194,478201..478206,
                     478213..478218)
                     /gene="djlA"
                     /locus_tag="O3Y_02075"
                     /note="HSP70 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99751"
     gene            complement(478412..478487)
                     /locus_tag="O3Y_t13333"
                     /db_xref="GeneID:11913389"
     tRNA            complement(478412..478487)
                     /locus_tag="O3Y_t13333"
                     /product="tRNA-Asn"
                     /db_xref="GeneID:11913389"
     gene            complement(478502..478577)
                     /locus_tag="O3Y_t13335"
                     /db_xref="GeneID:11913390"
     tRNA            complement(478502..478577)
                     /locus_tag="O3Y_t13335"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:11913390"
     gene            complement(478606..478681)
                     /locus_tag="O3Y_t13337"
                     /db_xref="GeneID:11913391"
     tRNA            complement(478606..478681)
                     /locus_tag="O3Y_t13337"
                     /product="tRNA-Asn"
                     /db_xref="GeneID:11913391"
     gene            complement(478697..478772)
                     /locus_tag="O3Y_t13339"
                     /db_xref="GeneID:11913392"
     tRNA            complement(478697..478772)
                     /locus_tag="O3Y_t13339"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:11913392"
     gene            complement(478814..478889)
                     /locus_tag="O3Y_t13341"
                     /db_xref="GeneID:11913393"
     tRNA            complement(478814..478889)
                     /locus_tag="O3Y_t13341"
                     /product="tRNA-Phe"
                     /db_xref="GeneID:11913393"
     gene            complement(479304..480929)
                     /locus_tag="O3Y_02080"
                     /db_xref="GeneID:11913394"
     CDS             complement(479304..480929)
                     /locus_tag="O3Y_02080"
                     /note="COG0840 Methyl-accepting chemotaxis protein"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="YP_005332291.1"
                     /db_xref="GI:379740322"
                     /db_xref="GeneID:11913394"
                     /translation="MKLKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTEL
                     FNSAYSILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPL
                     DPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARK
                     TPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEP
                     NEVRSAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELA
                     GAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHT
                     QKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAI
                     EAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTS
                     QSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSK
                     LSRVVMESHNSTQTLTKLARELEQWAAHFEVTR"
     misc_feature    complement(480558..480842)
                     /locus_tag="O3Y_02080"
                     /note="Cache domain; Region: Cache_2; pfam08269"
                     /db_xref="CDD:254697"
     misc_feature    complement(479319..480092)
                     /locus_tag="O3Y_02080"
                     /note="Methyl-accepting chemotaxis-like domains
                     (chemotaxis sensory transducer); Region: MA; smart00283"
                     /db_xref="CDD:214599"
     misc_feature    complement(479424..480020)
                     /locus_tag="O3Y_02080"
                     /note="Methyl-accepting chemotaxis protein (MCP),
                     signaling domain; Region: MCP_signal; cd11386"
                     /db_xref="CDD:206779"
     misc_feature    complement(order(479424..479429,479436..479438,
                     479445..479450,479457..479459,479466..479471,
                     479475..479480,479487..479492,479496..479501,
                     479508..479510,479517..479522,479529..479531,
                     479538..479543,479550..479555,479559..479564,
                     479571..479573,479580..479585,479592..479594,
                     479601..479606,479643..479648,479655..479660,
                     479664..479669,479676..479681,479688..479690,
                     479697..479702,479709..479711,479718..479720,
                     479730..479732,479751..479753,479760..479762,
                     479772..479774,479781..479786,479793..479795,
                     479802..479804,479811..479816,479823..479828,
                     479835..479837,479844..479849,479853..479855,
                     479865..479870,479874..479879,479886..479888,
                     479895..479900,479907..479912,479919..479921,
                     479928..479933,479940..479942,479949..479954,
                     479958..479963,479970..479972,479979..479984,
                     479991..479996))
                     /locus_tag="O3Y_02080"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:206779"
     misc_feature    complement(479685..479786)
                     /locus_tag="O3Y_02080"
                     /note="putative CheW interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:206779"
     gene            complement(481185..481260)
                     /locus_tag="O3Y_t13343"
                     /db_xref="GeneID:11913395"
     tRNA            complement(481185..481260)
                     /locus_tag="O3Y_t13343"
                     /product="tRNA-Asn"
                     /db_xref="GeneID:11913395"
     gene            complement(481298..481373)
                     /locus_tag="O3Y_t13345"
                     /db_xref="GeneID:11913396"
     tRNA            complement(481298..481373)
                     /locus_tag="O3Y_t13345"
                     /product="tRNA-Phe"
                     /db_xref="GeneID:11913396"
     gene            complement(481384..481459)
                     /locus_tag="O3Y_t13347"
                     /db_xref="GeneID:11913397"
     tRNA            complement(481384..481459)
                     /locus_tag="O3Y_t13347"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:11913397"
     gene            complement(481508..481583)
                     /locus_tag="O3Y_t13349"
                     /db_xref="GeneID:11913398"
     tRNA            complement(481508..481583)
                     /locus_tag="O3Y_t13349"
                     /product="tRNA-Phe"
                     /db_xref="GeneID:11913398"
     gene            complement(481693..482820)
                     /locus_tag="O3Y_02085"
                     /db_xref="GeneID:11913399"
     CDS             complement(481693..482820)
                     /locus_tag="O3Y_02085"
                     /note="COG0741 Soluble lytic murein transglycosylase and
                     related regulatory proteins (some contain LysM/invasin