LOCUS NC_016944 3007450 bp DNA circular BCT 25-DEC-2012
DEFINITION Vibrio cholerae IEC224 chromosome I, complete sequence.
ACCESSION NC_016944
VERSION NC_016944.1 GI:379739908
DBLINK Project: 89389
BioProject: PRJNA89389
KEYWORDS .
SOURCE Vibrio cholerae IEC224
ORGANISM Vibrio cholerae IEC224
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Vibrio.
REFERENCE 1 (bases 1 to 3007450)
AUTHORS de Sa Morais,L.L., Garza,D.R., Loureiro,E.C., Nunes,K.N.,
Vellasco,R.S., da Silva,C.P., Nunes,M.R., Thompson,C.C.,
Vicente,A.C. and Santos,E.C.
TITLE Complete genome sequence of a sucrose-nonfermenting epidemic strain
of Vibrio cholerae O1 from Brazil
JOURNAL J. Bacteriol. 194 (10), 2772 (2012)
PUBMED 22535947
REFERENCE 2 (bases 1 to 3007450)
AUTHORS Garza,D.R., Thompson,C.C., Loureiro,E.C., Dutilh,B.E., Inada,D.T.,
Junior,E.C., Cardoso,J.F., Nunes,M.R., de Lima,C.P.,
Silvestre,R.V., Nunes,K.N., Santos,E.C., Edwards,R.A., Vicente,A.C.
and de Sa Morais,L.L.
TITLE Genome-wide study of the defective sucrose fermenter strain of
Vibrio cholerae from the Latin American cholera epidemic
JOURNAL PLoS ONE 7 (5), E37283 (2012)
PUBMED 22662140
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 3007450)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (29-FEB-2012) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 3007450)
AUTHORS Garza,D.R. Jr., Thompson,C.C., Loureiro,E.C.B., Dutilh,B.E.,
Inada,D.T., Junior,E.C.S., Cardoso,J.F., Nunes,M.R.T., de
Lima,C.P.S., Vellasco,R.S., Nunes,K.N.B., Santos,E.C.O.,
Edwards,R.A., Vicente,A.C.P. and Morais,L.L.C.S.
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2012) Bioinformatics Core - Center for
Technological Innovations, Evandro Chagas Institute, Rodovia BR-316
km 7 s/n - Levilandia, Ananindeua, Para 67030-000, Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP003330.
Annotation was added by the NCBI Prokaryotic Genomes Automatic
Annotation Pipeline Group. Information about the Pipeline can be
found here:
http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
aware that the annotation is done automatically with little or no
manual curation.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3007450
/organism="Vibrio cholerae IEC224"
/mol_type="genomic DNA"
/strain="IEC224"
/db_xref="taxon:1134456"
/chromosome="I"
/country="Brazil: Belem"
/note="from Amazon cholera epidemic of the 1990's"
gene complement(372..806)
/locus_tag="O3Y_00005"
/db_xref="GeneID:11915667"
CDS complement(372..806)
/locus_tag="O3Y_00005"
/note="COG0716 Flavodoxins"
/codon_start=1
/transl_table=11
/product="FMN-binding protein MioC"
/protein_id="YP_005331878.1"
/db_xref="GI:379739909"
/db_xref="GeneID:11915667"
/translation="MIHIITGSTLGGAEYVGDHLSDLLQEQGFDTKIHNQPNMSEIPA
KGTWLIITSTHGAGEYPDNIQPFIQALQNTPPNTSALRYAVVAIGDSSYDTFCAAGKH
AYQLLGDIGAKPLANCFTIDVQEHPVPEDAAEAWLKRVINRF"
misc_feature complement(375..806)
/locus_tag="O3Y_00005"
/note="FMN-binding protein MioC; Provisional; Region:
PRK09004"
/db_xref="CDD:181608"
gene complement(816..2177)
/gene="trmE"
/locus_tag="O3Y_00010"
/db_xref="GeneID:11915669"
CDS complement(816..2177)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="COG0486 Predicted GTPase"
/codon_start=1
/transl_table=11
/product="tRNA modification GTPase TrmE"
/protein_id="YP_005331879.1"
/db_xref="GI:379739910"
/db_xref="GeneID:11915669"
/translation="MTTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTLRPRY
AEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGV
RPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVE
SLIHLRIYVEAAIDFPEEEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKV
VIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA
SDAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRN
KADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQEGGFMARRRHL
DALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFC
IGK"
misc_feature complement(819..2177)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="tRNA modification GTPase TrmE; Reviewed; Region:
trmE; PRK05291"
/db_xref="CDD:235392"
misc_feature complement(1821..2165)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="GTP-binding protein TrmE N-terminus; Region:
TrmE_N; pfam10396"
/db_xref="CDD:204472"
misc_feature complement(1050..1541)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="trmE is a tRNA modification GTPase; Region: trmE;
cd04164"
/db_xref="CDD:206727"
misc_feature complement(1491..1514)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="G1 box; other site"
/db_xref="CDD:206727"
misc_feature complement(order(1101..1109,1167..1169,1173..1178,
1488..1499,1503..1505))
/gene="trmE"
/locus_tag="O3Y_00010"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206727"
misc_feature complement(1419..1469)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="Switch I region; other site"
/db_xref="CDD:206727"
misc_feature complement(1428..1430)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="G2 box; other site"
/db_xref="CDD:206727"
misc_feature complement(order(1296..1340,1344..1376))
/gene="trmE"
/locus_tag="O3Y_00010"
/note="Switch II region; other site"
/db_xref="CDD:206727"
misc_feature complement(1362..1373)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="G3 box; other site"
/db_xref="CDD:206727"
misc_feature complement(1167..1178)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="G4 box; other site"
/db_xref="CDD:206727"
misc_feature complement(1101..1109)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="G5 box; other site"
/db_xref="CDD:206727"
misc_feature complement(828..1046)
/gene="trmE"
/locus_tag="O3Y_00010"
/note="Catalytic cysteine-containing C-terminus of GTPase,
MnmE; Region: GTPase_Cys_C; pfam12631"
/db_xref="CDD:204989"
gene complement(2271..3896)
/locus_tag="O3Y_00015"
/db_xref="GeneID:11915671"
CDS complement(2271..3896)
/locus_tag="O3Y_00015"
/note="COG0706 Preprotein translocase subunit YidC"
/codon_start=1
/transl_table=11
/product="membrane protein insertase"
/protein_id="YP_005331880.1"
/db_xref="GI:379739911"
/db_xref="GeneID:11915671"
/translation="MDSQRNILLIALALVSFLLFQQWQVAKNPAPQATQQAQSTGAAP
APSFSDELDPTPAQNVAAKAKTITVSTDVLTLSIDTLGGDVVSAKLNQYSEELNSPES
FVLLQNTQGHQFIAQSGLVGPQGIDVTSNNRPAYQVSADSFTLAEGQDELRIPMTYQA
NGIDYTKTFILKRGSYAVDVVFDVANNSGSEATLGMYAHLRQNLLDSGGNLAMPTYRG
GAYSTSDVRYKKYSFDDMKDRNLSAPNDVTVNWVAMIQHYFASAWIPRDEPQAQLYSR
VINNLGDMGIRTPNKTIANGDKAEFEATLWVGPKLQDQMAATAPNLDLVVDYGWLWFI
AKPLHWLLSVIQTFVGNWGVAIICLTFIVRGAMYPLTKAQYTSMAKMRMLQPKLQAMR
ERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESVELRHSPFF
GWIHDLSAQDPYYILPLLMGASMFVIQKMSPTTITDPMQQKIMTFMPVMFTFFFLWFP
SGLVLYWLVSNIVTLIQQTLIYKALEKKGLHSK"
misc_feature complement(2274..3734)
/locus_tag="O3Y_00015"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:234942"
misc_feature complement(2304..2846)
/locus_tag="O3Y_00015"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:234272"
gene complement(3899..4156)
/locus_tag="O3Y_00020"
/db_xref="GeneID:11915673"
CDS complement(3899..4156)
/locus_tag="O3Y_00020"
/note="COG0759 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331881.1"
/db_xref="GI:379739912"
/db_xref="GeneID:11915673"
/translation="MATPLSPFSWLAIGIVKLYQWFISPLIGPRCRFTPTCSTYAIEA
LRAHGFIKGCWLSTKRLLKCHPLNEGGFDPVPPVQKQDRDK"
misc_feature complement(3932..4135)
/locus_tag="O3Y_00020"
/note="Haemolytic domain; Region: Haemolytic; pfam01809"
/db_xref="CDD:201984"
gene complement(4123..4479)
/gene="rnpA"
/locus_tag="O3Y_00025"
/db_xref="GeneID:11915675"
CDS complement(4123..4479)
/gene="rnpA"
/locus_tag="O3Y_00025"
/EC_number="3.1.26.5"
/note="COG0594 RNase P protein component"
/codon_start=1
/transl_table=11
/product="ribonuclease P"
/protein_id="YP_005331882.1"
/db_xref="GI:379739913"
/db_xref="GeneID:11915675"
/translation="MSTYAFNRELRLLTPEHYQKVFQQAHSAGSPHLTIIARANNLSH
PRLGLAVPKKQIKTAVGRNRFKRICRESFRLHQNQLANKDFVVIAKKSAQDLSNEELF
NLLGKLWQRLSRPSRG"
misc_feature complement(4138..4479)
/gene="rnpA"
/locus_tag="O3Y_00025"
/note="ribonuclease P; Reviewed; Region: rnpA; PRK01732"
/db_xref="CDD:179327"
gene complement(4492..4629)
/locus_tag="O3Y_00030"
/db_xref="GeneID:11915677"
CDS complement(4492..4629)
/locus_tag="O3Y_00030"
/note="COG0230 Ribosomal protein L34"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L34"
/protein_id="YP_005331883.1"
/db_xref="GI:379739914"
/db_xref="GeneID:11915677"
/translation="MSKRTFQPSVLKRKRTHGFRARMATANGRKVLNARRAKGRKRLS
K"
misc_feature complement(4498..4626)
/locus_tag="O3Y_00030"
/note="50S ribosomal protein L34; Reviewed; Region: rpmH;
PRK00399"
/db_xref="CDD:179004"
gene complement(4871..5608)
/locus_tag="O3Y_00035"
/db_xref="GeneID:11915679"
CDS complement(4871..5608)
/locus_tag="O3Y_00035"
/note="COG1126 ABC-type polar amino acid transport system,
ATPase component"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter ATP-binding protein"
/protein_id="YP_005331884.1"
/db_xref="GI:379739915"
/db_xref="GeneID:11915679"
/translation="MIKLQNIHKRFGTSEVLKGIDLEIQRGEIVVIIGSSGTGKSTLL
RCVNFLEQADQGSIRIDELTVDTQKHTKADVLALRRKTGFVFQNYALFAHLTARQNIA
EALITVRGWKKAQAHQRAQQILDDIGLGDKGDSYPAALSGGQQQRVGIGRAMALQPEL
LLFDEPTSALDPEWVGEVLALMKKLATQHQTMLVVTHEMQFAKEVADRVIFMAEGKIV
EQGSPQDIFDHPQDPRLRKFLNQVGIR"
misc_feature complement(4883..5608)
/locus_tag="O3Y_00035"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:224051"
misc_feature complement(4958..5605)
/locus_tag="O3Y_00035"
/note="ATP-binding cassette domain of the histidine and
glutamine transporters; Region: ABC_HisP_GlnQ; cd03262"
/db_xref="CDD:213229"
misc_feature complement(5486..5509)
/locus_tag="O3Y_00035"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213229"
misc_feature complement(order(5018..5020,5114..5119,5348..5350,
5483..5491,5495..5500))
/locus_tag="O3Y_00035"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213229"
misc_feature complement(5348..5359)
/locus_tag="O3Y_00035"
/note="Q-loop/lid; other site"
/db_xref="CDD:213229"
misc_feature complement(5162..5191)
/locus_tag="O3Y_00035"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213229"
misc_feature complement(5114..5131)
/locus_tag="O3Y_00035"
/note="Walker B; other site"
/db_xref="CDD:213229"
misc_feature complement(5096..5107)
/locus_tag="O3Y_00035"
/note="D-loop; other site"
/db_xref="CDD:213229"
misc_feature complement(5012..5032)
/locus_tag="O3Y_00035"
/note="H-loop/switch region; other site"
/db_xref="CDD:213229"
gene complement(5605..6276)
/locus_tag="O3Y_00040"
/db_xref="GeneID:11915681"
CDS complement(5605..6276)
/locus_tag="O3Y_00040"
/note="COG0765 ABC-type amino acid transport system,
permease component"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="YP_005331885.1"
/db_xref="GI:379739916"
/db_xref="GeneID:11915681"
/translation="MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIR
VFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVIGLTLHF
AAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMI
KSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLN
KAYAR"
misc_feature complement(5656..6222)
/locus_tag="O3Y_00040"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(5656..5658,5665..5670,5677..5682,
5686..5691,5698..5703,5731..5736,5773..5778,5785..5796,
5815..5817,5824..5829,5869..5871,5920..5922,5929..5934,
5944..5946,5950..5955,5962..5964,5968..5970,5974..5979,
6052..6054,6058..6063,6070..6099,6103..6114,6142..6144,
6157..6162,6169..6174))
/locus_tag="O3Y_00040"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(5779..5796,6052..6096))
/locus_tag="O3Y_00040"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(5701..5703,5731..5733,5740..5742,
5776..5778,5992..5994,6052..6054))
/locus_tag="O3Y_00040"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(5848..5850,5860..5865,5881..5919))
/locus_tag="O3Y_00040"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(6354..7100)
/locus_tag="O3Y_00045"
/db_xref="GeneID:11915683"
CDS complement(6354..7100)
/locus_tag="O3Y_00045"
/note="COG0834 ABC-type amino acid transport/signal
transduction systems, periplasmic component/domain"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter substrate-binding
protein"
/protein_id="YP_005331886.1"
/db_xref="GI:379739917"
/db_xref="GeneID:11915683"
/translation="MKHWFNIALAALALSSATVQAATEVKVGMSGRYFPFTFVKQDEL
QGFEVDVWNEIGKRNDYKVEFVTANFSGLLGLLETGRIDTISNQITITDARKAKYLFS
DPYVIDGAQITVRKGNEAIKGIDDLAGKTVAVNLGSNFEQLLRNHDKDGKINIKTYDT
GIEHDVALGRADAFVMDRLSALELIEKTGLPLQLAGSPFETIENAWPFVNNEKGQQLQ
GEVNKALAAMRADGTLSQIALKWFGTDISQ"
misc_feature complement(6369..7028)
/locus_tag="O3Y_00045"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:215950"
misc_feature complement(6375..7028)
/locus_tag="O3Y_00045"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature complement(order(6570..6572,6684..6686,6816..6818,
6891..6893,7002..7004))
/locus_tag="O3Y_00045"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature complement(order(6591..6593,6609..6611))
/locus_tag="O3Y_00045"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature complement(6480..6497)
/locus_tag="O3Y_00045"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene 7412..8815
/gene="dnaA"
/locus_tag="O3Y_00050"
/db_xref="GeneID:11912945"
CDS 7412..8815
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="COG0593 ATPase involved in DNA replication
initiation"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_005331887.1"
/db_xref="GI:379739918"
/db_xref="GeneID:11912945"
/translation="MSSSLWLQCLQRLQEELPAAEFSMWVRPLQAELNDNTLTLFAPN
RFVLDWVRDKYLNNINRLLMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESS
APAQLAQRKPIHKTWDDDSAAADITHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDN
PGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNA
IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIS
GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLPDEVAFFIAKRLRSNVR
ELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVA
DLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE
SHDIKEDYSNLIRTLSS"
misc_feature 7418..7606
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:221153"
misc_feature 7433..8713
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="chromosomal replication initiator protein DnaA;
Region: DnaA; TIGR00362"
/db_xref="CDD:232941"
misc_feature 7850..8281
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 7925..7948
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(7928..7951,8114..8116,8216..8218)
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature <8093..8503
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cl17189"
/db_xref="CDD:247743"
misc_feature 8102..8119
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 8252..8254
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 8537..8806
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(8606..8608,8630..8635,8654..8656,8672..8680,
8705..8719,8726..8728,8735..8740)
/gene="dnaA"
/locus_tag="O3Y_00050"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 8873..9973
/locus_tag="O3Y_00055"
/db_xref="GeneID:11912946"
CDS 8873..9973
/locus_tag="O3Y_00055"
/EC_number="2.7.7.7"
/note="COG0592 DNA polymerase sliding clamp subunit (PCNA
homolog)"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_005331888.1"
/db_xref="GI:379739919"
/db_xref="GeneID:11912946"
/translation="MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSM
TATDLEVELISRVTLEGEFEAGSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSG
RSRFSLATLPASDFPNIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLF
EIDGTTLRSVATDGHRMAVAQAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQI
GHSNLRAEVNHFVFTSKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNE
KFRGVRVNLADNGMRITANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCD
NVRVSMSDANASALVENVDDDSAMYVVMPIRL"
misc_feature 8873..9970
/locus_tag="O3Y_00055"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:235541"
misc_feature 8873..9967
/locus_tag="O3Y_00055"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:238082"
misc_feature order(8942..8944,9089..9091,9110..9112,9464..9466)
/locus_tag="O3Y_00055"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:238082"
misc_feature order(9092..9094,9101..9103,9179..9181,9185..9187,
9686..9688,9779..9784)
/locus_tag="O3Y_00055"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238082"
misc_feature order(9386..9388,9392..9403,9830..9832,9956..9967)
/locus_tag="O3Y_00055"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:238082"
misc_feature order(9386..9388,9392..9397,9611..9613,9716..9718,
9755..9760,9839..9841,9956..9967)
/locus_tag="O3Y_00055"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:238082"
gene 9991..11082
/gene="recF"
/locus_tag="O3Y_00060"
/db_xref="GeneID:11912947"
CDS 9991..11082
/gene="recF"
/locus_tag="O3Y_00060"
/note="COG1195 Recombinational DNA repair ATPase (RecF
pathway)"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_005331889.1"
/db_xref="GI:379739920"
/db_xref="GeneID:11912947"
/translation="MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIY
LLGHGRSFKSSLTGRIIQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKI
GGQTGQKLAQLAQILPLQLIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFK
RLSKQRNALLKSAQSYRELSYWDQELARLAEQIDQWRESYVNQLKNVAEQLCRTFLPE
FDIDLKYYRGWEKDQPYQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVLSR
GQLKLMVCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFV
SSITESQVADMLDESSKTFHVAHGVIEQG"
misc_feature 9991..11076
/gene="recF"
/locus_tag="O3Y_00060"
/note="Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair]; Region:
RecF; COG1195"
/db_xref="CDD:224116"
misc_feature 9997..>10503
/gene="recF"
/locus_tag="O3Y_00060"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 10078..10101
/gene="recF"
/locus_tag="O3Y_00060"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(10087..10092,10096..10104,10360..10362)
/gene="recF"
/locus_tag="O3Y_00060"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 10351..10362
/gene="recF"
/locus_tag="O3Y_00060"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature <10693..11073
/gene="recF"
/locus_tag="O3Y_00060"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 10810..10839
/gene="recF"
/locus_tag="O3Y_00060"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 10897..10914
/gene="recF"
/locus_tag="O3Y_00060"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 10921..10932
/gene="recF"
/locus_tag="O3Y_00060"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 10990..11010
/gene="recF"
/locus_tag="O3Y_00060"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 11103..13520
/gene="gyrB"
/locus_tag="O3Y_00065"
/db_xref="GeneID:11912948"
CDS 11103..13520
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="COG0187 Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_005331890.1"
/db_xref="GI:379739921"
/db_xref="GeneID:11912948"
/translation="MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
DNSIDEALAGYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGG
KFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET
ERTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMY
EGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQ
RDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFS
SQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREM
TRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK
ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIR
TLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAE
LHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADK
AAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKIQVRTHGVTHEYLLSADL
INSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRY
KGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNAL
KVANLDV"
misc_feature 11103..13517
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:237860"
misc_feature 11208..>11357
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature 11238..11240
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(11325..11327,11331..11333)
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 11760..12236
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:238419"
misc_feature 11916..11918
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="anchoring element; other site"
/db_xref="CDD:238419"
misc_feature order(12090..12092,12099..12104,12108..12110)
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238419"
misc_feature order(12108..12110,12114..12116)
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238419"
misc_feature 12357..12701
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(12375..12380,12387..12389,12597..12599,12603..12605,
12609..12611)
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(12375..12377,12597..12599)
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 13290..13484
/gene="gyrB"
/locus_tag="O3Y_00065"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 13945..14367
/locus_tag="O3Y_00070"
/db_xref="GeneID:11912949"
CDS 13945..14367
/locus_tag="O3Y_00070"
/note="COG0782 Transcription elongation factor"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331891.1"
/db_xref="GI:379739922"
/db_xref="GeneID:11912949"
/translation="MLNRLSLNIRRFLAGWWLRSRFLTYQSPLLLLELFEKLEHPRSP
IERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGRRQH
EVFTLSIWGQPHCFAITHVQHSMQGKPTKLCHACYVSN"
gene 14377..14493
/locus_tag="O3Y_00075"
/db_xref="GeneID:11912950"
CDS 14377..14493
/locus_tag="O3Y_00075"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331892.1"
/db_xref="GI:379739923"
/db_xref="GeneID:11912950"
/translation="MSKQEMKKPQLSLKEKRKLKQEKAQESSVIKPRKSKGR"
gene 14769..15206
/locus_tag="O3Y_00080"
/db_xref="GeneID:11912951"
CDS 14769..15206
/locus_tag="O3Y_00080"
/note="COG0071 Molecular chaperone (small heat shock
protein)"
/codon_start=1
/transl_table=11
/product="16 kDa heat shock protein A"
/protein_id="YP_005331893.1"
/db_xref="GI:379739924"
/db_xref="GeneID:11912951"
/translation="MRTVDFTPLYRNAIGFDRLLNMMENSAAKNAQGGYPPYNIEQKE
DNQYRITMAVAGFGDEEIDITQQENTLIVRGERKPEESKNYIYQGIAERDFERKFQLA
DYVKVTGATMEHGLLHIDLEREIPEAMQPRKIAINGKHLLENK"
misc_feature 14769..15179
/locus_tag="O3Y_00080"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:223149"
misc_feature 14874..15137
/locus_tag="O3Y_00080"
/note="Alpha-crystallin domain (ACD) found in Escherichia
coli inclusion body-associated proteins IbpA and IbpB, and
similar proteins. IbpA and IbpB are 16 kDa small heat
shock proteins (sHsps). sHsps are molecular chaperones
that suppress protein aggregation...; Region:
ACD_IbpA-B_like; cd06470"
/db_xref="CDD:107227"
misc_feature order(14880..14894,14919..14921,14925..14927,14931..14936,
15057..15059,15111..15116)
/locus_tag="O3Y_00080"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107227"
gene complement(15294..16550)
/gene="avtA"
/locus_tag="O3Y_00085"
/db_xref="GeneID:11912952"
CDS complement(15294..16550)
/gene="avtA"
/locus_tag="O3Y_00085"
/EC_number="2.6.1.66"
/note="COG3977 Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase"
/codon_start=1
/transl_table=11
/product="valine--pyruvate transaminase"
/protein_id="YP_005331894.1"
/db_xref="GI:379739925"
/db_xref="GeneID:11912952"
/translation="MQYSSFGEKFNRYSGITQLMDDLNDGLRTPGAIMLGGGNPAAIP
AMLDYFHNTSAEMLADGSLLNAMTNYDGPQGKDVFVKSLATLLRETYGWNISEKNITL
TNGSQSGFFYLFNLFAGKQPDGAHKKILLPLAPEYIGYGDAGIDDDIFVSYRPEIELL
DQGLFKYHVDFSELKVDESVAAICVSRPTNPTGNVLTEEEIHKLDQLARDNGVPLIID
NAYGVPFPNIIFEDIEPFWNDNTILCMSLSKLGLPGLRCGIVIANEAVTQALTNMNGI
ISLAPGSMGPALVQRMIEKGDLLRLSEQVIKPFYRQKAQHAVELLQSAITDPRFRIHK
PEGAIFLWLWFDELPITTMELYQRLKARGVLIVPGEYFFIGQPQEWPHAHECLRMNYV
QNEQAMEQGIAIIAEEVQKAYQQANV"
misc_feature complement(15303..16550)
/gene="avtA"
/locus_tag="O3Y_00085"
/note="valine--pyruvate transaminase; Provisional; Region:
avtA; PRK09440"
/db_xref="CDD:236517"
misc_feature complement(15330..16388)
/gene="avtA"
/locus_tag="O3Y_00085"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(15783..15785,15804..15809,15813..15815,
15888..15890,15981..15983,16101..16103,16230..16238))
/gene="avtA"
/locus_tag="O3Y_00085"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(15675..15677,15684..15686,15783..15791,
15909..15911,16227..16229))
/gene="avtA"
/locus_tag="O3Y_00085"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(15804..15806)
/gene="avtA"
/locus_tag="O3Y_00085"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene complement(16869..18935)
/gene="glyS"
/locus_tag="O3Y_00090"
/db_xref="GeneID:11912953"
CDS complement(16869..18935)
/gene="glyS"
/locus_tag="O3Y_00090"
/EC_number="6.1.1.14"
/note="COG0751 Glycyl-tRNA synthetase, beta subunit"
/codon_start=1
/transl_table=11
/product="glycyl-tRNA synthetase subunit beta"
/protein_id="YP_005331895.1"
/db_xref="GI:379739926"
/db_xref="GeneID:11912953"
/translation="MAKEFLIELGTEELPPKQLRTLAEAFAANFAAELATADIAHEGV
TWFATPRRLALKVANLAESQPDRVVEKRGPAVNVAFDADGKPTKAAEGWARGNGITVE
QAERLVTDKGEWLLFKEQVQGQQTASVVVEMAAKALANLPIAKPMRWGDKETQFIRPV
KTLTILFGSELIQGEILGVASARTLRGHRFMGEAEFTIESAEQYPAILEERGKVIADY
ATRKAMIIEGSQQAAQQLGGIADLEDALVEEVTSLVEWPVVMTAKFEEKFLKVPAEAL
VYTMKGDQKYFPVYDASKKLLPNFIFVSNIESKEPRHIVEGNEKVVRPRLADAEFFFN
TDRKRPLVDRLPLLENAIFQQQLGTIKDKTDRITELAGYIAEQIGADVEKSKRAGLLA
KCDLMTSMVFEFTDTQGVMGMHYARHDGEAEEVAVALNEQYMPRFAGDELPSRGVSAA
VAMADKLDTIVGIFGIGQAPKGSDPFALRRASLGVLRILVEYGYQLDLVDLIAKAKSL
FGDRLTNANVEQEVIEFMLGRFPTWYQDAGFSIDIIQAVLARNPTKPADFDQRVKAVS
HFRALEEAEALAAANKRVGNILAKYDGELGEEIDLALLQEDAEKALAEAVEIMAEALE
PAFATGNYQEALSKLAGLRAPVDAFFDNVMVMADDEALKKNRLTLLNKLRNLFLQIAD
ISLLQK"
misc_feature complement(16872..18932)
/gene="glyS"
/locus_tag="O3Y_00090"
/note="glycyl-tRNA synthetase subunit beta; Validated;
Region: glyS; PRK01233"
/db_xref="CDD:234925"
misc_feature complement(<16956..17192)
/gene="glyS"
/locus_tag="O3Y_00090"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:245839"
STS 17438..18199
/standard_name="ha2331"
/db_xref="UniSTS:515525"
gene complement(18950..19867)
/gene="glyQ"
/locus_tag="O3Y_00095"
/db_xref="GeneID:11912954"
CDS complement(18950..19867)
/gene="glyQ"
/locus_tag="O3Y_00095"
/EC_number="6.1.1.14"
/note="COG0752 Glycyl-tRNA synthetase, alpha subunit"
/codon_start=1
/transl_table=11
/product="glycyl-tRNA synthetase subunit alpha"
/protein_id="YP_005331896.1"
/db_xref="GI:379739927"
/db_xref="GeneID:11912954"
/translation="MQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMT
CLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSL
RVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
GEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDF
LFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRI
RNLTKSVAEAYYASREALGFPMCKKSEQK"
misc_feature complement(18992..19846)
/gene="glyQ"
/locus_tag="O3Y_00095"
/note="Class II Glycyl-tRNA synthetase (GlyRS) alpha
subunit core catalytic domain. GlyRS functions as a
homodimer in eukaryotes, archaea and some bacteria and as
a heterotetramer in the remainder of prokaryotes and in
arabidopsis. It is responsible for the...; Region:
GlyRS_alpha_core; cd00733"
/db_xref="CDD:238375"
misc_feature complement(order(19118..19120,19130..19132,19139..19150,
19154..19156,19166..19168,19175..19177,19184..19186,
19193..19195,19202..19207,19214..19216,19223..19225,
19229..19231,19250..19255,19262..19264,19313..19315,
19631..19633,19679..19681,19691..19693,19718..19720,
19766..19777,19781..19783,19787..19792,19814..19816,
19826..19828,19838..19840))
/gene="glyQ"
/locus_tag="O3Y_00095"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238375"
misc_feature complement(19772..19795)
/gene="glyQ"
/locus_tag="O3Y_00095"
/note="motif 1; other site"
/db_xref="CDD:238375"
misc_feature complement(order(19361..19366,19370..19375,19379..19384,
19430..19432,19442..19447,19610..19618,19622..19624,
19628..19630,19676..19678,19751..19753,19757..19759))
/gene="glyQ"
/locus_tag="O3Y_00095"
/note="active site"
/db_xref="CDD:238375"
misc_feature complement(19670..19681)
/gene="glyQ"
/locus_tag="O3Y_00095"
/note="motif 2; other site"
/db_xref="CDD:238375"
misc_feature complement(19361..19372)
/gene="glyQ"
/locus_tag="O3Y_00095"
/note="motif 3; other site"
/db_xref="CDD:238375"
gene 20283..20837
/locus_tag="O3Y_00100"
/db_xref="GeneID:11912955"
CDS 20283..20837
/locus_tag="O3Y_00100"
/note="COG2119 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331897.1"
/db_xref="GI:379739928"
/db_xref="GeneID:11912955"
/translation="MSVLAISITTVALAEIGDKTQLLSLLLASRYRKPIPIIAAIFLA
TLANHALAAWLGVVVADYLSPDILKWVLVVSFLAMAGWILIPDKLDGEESISTRGPFV
ASFIAFFMAEIGDKTQIATSILGAQYADALSWVIVGTTLGMLLANVPVVLIGKLSADK
MPLGLIRKVTAGLFLLMALATAFF"
misc_feature 20283..20792
/locus_tag="O3Y_00100"
/note="Predicted membrane protein [Function unknown];
Region: COG2119"
/db_xref="CDD:225030"
misc_feature 20292..20522
/locus_tag="O3Y_00100"
/note="Uncharacterized protein family UPF0016; Region:
UPF0016; pfam01169"
/db_xref="CDD:216341"
misc_feature 20583..20789
/locus_tag="O3Y_00100"
/note="Uncharacterized protein family UPF0016; Region:
UPF0016; pfam01169"
/db_xref="CDD:216341"
gene 20943..21200
/locus_tag="O3Y_00105"
/db_xref="GeneID:11912956"
CDS 20943..21200
/locus_tag="O3Y_00105"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit II-like protein"
/protein_id="YP_005331898.1"
/db_xref="GI:379739929"
/db_xref="GeneID:11912956"
/translation="MLTRYMGMTPKSQSYLFSFGLVLTLLGMALTDLWMPMVVGAIVM
TALAVESWIRVAHIIPLHDEVRTLQKQLNRLQAELRNLEEE"
misc_feature <21102..21197
/locus_tag="O3Y_00105"
/note="basic leucine zipper DNA-binding and
multimerization region of GCN4 and related proteins;
Region: B_zip1; cl02576"
/db_xref="CDD:243100"
gene complement(21287..21535)
/locus_tag="O3Y_00110"
/db_xref="GeneID:11912957"
CDS complement(21287..21535)
/locus_tag="O3Y_00110"
/note="COG0425 Predicted redox protein, regulator of
disulfide bond formation"
/codon_start=1
/transl_table=11
/product="sulfur transfer protein SirA"
/protein_id="YP_005331899.1"
/db_xref="GI:379739930"
/db_xref="GeneID:11912957"
/translation="MTFNPNIATHTLEAEGLRCPEPVMMVRKTIRTMLDGEVLLVTAD
DPSTTRDIPSFCRFMDHQLLGAQIDQLPYQYLIKKGLA"
misc_feature complement(21299..21505)
/locus_tag="O3Y_00110"
/note="SirA (also known as UvrY, and YhhP) belongs to a
family of two-component response regulators that controls
secondary metabolism and virulence. The other member of
this two-component system is a sensor kinase called BarA
which phosphorylates SirA. A...; Region: SirA; cd03423"
/db_xref="CDD:239515"
misc_feature complement(order(21464..21466,21470..21481,21488..21490,
21497..21502))
/locus_tag="O3Y_00110"
/note="CPxP motif; other site"
/db_xref="CDD:239515"
gene 21668..21856
/locus_tag="O3Y_00115"
/db_xref="GeneID:11912958"
CDS 21668..21856
/locus_tag="O3Y_00115"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331900.1"
/db_xref="GI:379739931"
/db_xref="GeneID:11912958"
/translation="MMLTTLDRLTIYAVLCFISLCALGLGETTQAQLMPVLGTAASIF
GIWLEMRSEQDTTQQPHR"
gene complement(22028..23008)
/locus_tag="O3Y_00120"
/db_xref="GeneID:11912959"
CDS complement(22028..23008)
/locus_tag="O3Y_00120"
/note="COG0604 NADPH:quinone reductase and related
Zn-dependent oxidoreductases"
/codon_start=1
/transl_table=11
/product="zinc-binding alcohol dehydrogenase"
/protein_id="YP_005331901.1"
/db_xref="GI:379739932"
/db_xref="GeneID:11912959"
/translation="MFNALLLTQQDKITHATVTQINDDQLPAGNVTVAVNYSSLNYKD
GLAITGKGKIIREFPMVPGIDFAGTVLESADARYQVGDAVVLTGWGVGENHWGGMAQK
ARLNADWLVKLPQGLTSQQAMMIGTAGFTAMLCVQALIDGGIKPEDGEILVTGASGGV
GSVAVTLLAQLGYKVVAVTGRVAQNGPLLEQLGASRVIDRQEFSEASRPLEKQLWVGA
VDTVGSKVLAKVLAQMHYNGVVAACGLAGGFDLPTTVMPFILRNVRLQGVDSVSCPVE
KRLAAWKKLAELLPASYYAQACHEISLSQVPEYAEAITNGQVTGRVVVKL"
misc_feature complement(22037..23005)
/locus_tag="O3Y_00120"
/note="Yhdh putative quinone oxidoreductases; Region:
MDR_yhdh; cd08288"
/db_xref="CDD:176248"
misc_feature complement(22031..23002)
/locus_tag="O3Y_00120"
/note="putative quinone oxidoreductase, YhdH/YhfP family;
Region: oxido_YhdH; TIGR02823"
/db_xref="CDD:234026"
misc_feature complement(order(22055..22057,22061..22063,22070..22072,
22196..22207,22268..22282,22343..22348,22409..22411,
22466..22474,22529..22540,22544..22546,22616..22618,
22625..22630,22883..22888))
/locus_tag="O3Y_00120"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:176248"
misc_feature complement(order(22190..22195,22202..22225,22229..22237,
22241..22252,22256..22258,22274..22285,22301..22303,
22382..22384))
/locus_tag="O3Y_00120"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176248"
gene complement(23256..24788)
/locus_tag="O3Y_00125"
/db_xref="GeneID:11912960"
CDS complement(23256..24788)
/locus_tag="O3Y_00125"
/EC_number="4.3.1.19"
/note="COG1171 Threonine dehydratase"
/codon_start=1
/transl_table=11
/product="threonine dehydratase"
/protein_id="YP_005331902.1"
/db_xref="GI:379739933"
/db_xref="GeneID:11912960"
/translation="MGLTNQTGAEYLRQILRSPVYEVANVTPLQTMPRLSARIGNQVQ
IKREDRQPVHSFKLRGAYNMVSHLTEAQKAAGVIAASAGNHAQGMALSGTKLGIKTTI
VMPRTTPDIKVEAVRGFGGEVLLHGSNFDEAKAEAERLSKEQGYTFVPPFDHPLVIAG
QGTIGMEMLQQNGHLDYIFVPVGGGGLAAGVAVLVKQLMPEIQVIAVEPEDSACLKAA
LDAGKPVVLDQVSMFADGVAVKRIGDETFRLCQQYIDGHVTVSSDEICAAVKDIFEDT
RAIAEPSGALALAGLKKFAEQQQLKGKQLGTVLSGANTNFHGLRYVSERCELGEKREG
LLAVTIPERKGAFFDFCQIIGNRAVTEFNYRYNDDQLANIFVGVRLVGGPDELKSIIH
ELRQSGYPVQDLSDDEMAKLHIRYMIGGRPSKPLTERLYSFEFPEYPGALLKFLSMLG
THWNISLFNYRNHGADYGRVLCGFELDTPDLVRFSEHLVELGYRYKDETDNPAYRFFL
AK"
misc_feature complement(23262..24770)
/locus_tag="O3Y_00125"
/note="threonine dehydratase; Reviewed; Region: PRK09224"
/db_xref="CDD:236417"
misc_feature complement(23844..24755)
/locus_tag="O3Y_00125"
/note="Threonine dehydratase: The first step in amino acid
degradation is the removal of nitrogen. Although the
nitrogen atoms of most amino acids are transferred to
alpha-ketoglutarate before removal, the alpha-amino group
of threonine can be directly...; Region: Thr-dehyd;
cd01562"
/db_xref="CDD:107205"
misc_feature complement(order(23844..23855,23952..23960,23970..23972,
23979..23984,23991..23993,24198..24203,24639..24644,
24729..24734,24741..24743,24750..24755))
/locus_tag="O3Y_00125"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:107205"
misc_feature complement(order(23859..23861,24228..24242,24537..24539,
24618..24620))
/locus_tag="O3Y_00125"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107205"
misc_feature complement(24618..24620)
/locus_tag="O3Y_00125"
/note="catalytic residue [active]"
/db_xref="CDD:107205"
misc_feature complement(23538..23792)
/locus_tag="O3Y_00125"
/note="First of two tandem C-terminal ACT domains of
threonine dehydratase I (ThrD-I; L-threonine hydrolyase);
Region: ACT_ThrD-I_1; cd04906"
/db_xref="CDD:153178"
misc_feature complement(23739..23756)
/locus_tag="O3Y_00125"
/note="putative Ile/Val binding site [chemical binding];
other site"
/db_xref="CDD:153178"
misc_feature complement(23265..23507)
/locus_tag="O3Y_00125"
/note="Second of two tandem C-terminal ACT domains of
threonine dehydratase I (ThrD-I; L-threonine hydrolyase);
Region: ACT_ThrD-I_2; cd04907"
/db_xref="CDD:153179"
misc_feature complement(23454..23471)
/locus_tag="O3Y_00125"
/note="putative Ile/Val binding site [chemical binding];
other site"
/db_xref="CDD:153179"
gene complement(24792..26633)
/locus_tag="O3Y_00130"
/db_xref="GeneID:11912961"
CDS complement(24792..26633)
/locus_tag="O3Y_00130"
/EC_number="4.2.1.9"
/note="COG0129 Dihydroxyacid dehydratase/phosphogluconate
dehydratase"
/codon_start=1
/transl_table=11
/product="dihydroxy-acid dehydratase"
/protein_id="YP_005331903.1"
/db_xref="GI:379739934"
/db_xref="GeneID:11912961"
/translation="MPKYRSATTTHGRNMAGARALWRATGVKEEDFGKPIIAVVNSFT
QFVPGHVHLKDLGQLVAREIEAAGGIAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPAIFVSGGPMEAGKTKLSDQII
KLDLVDAMMQGADPKVSDAQSEQIERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
GSLLATHADRKQLFLTAGQRIVELTKRYYEQDDASVLPRNIANKAAFENAIALDIAMG
GSTNTVLHLLAAAQEGEVEFDMTDIDRMSRQVPHLCKVAPSTQKYHMEDVHRAGGVMG
ILGELQRAGLLKDQTRTVLGISLQEQLAQYDVKQTQDPAVHTMFRAGPAGIRTTQAFS
QDCRWDTLDDDRQEGCIRDKAHAFSQDGGLAVLKGNLAIDGCIVKTAGVDESILKFRG
PAVVYESQEDAVNGILGGQVKAGDVVVIRYEGPKGGPGMQEMLYPTTYLKSMGLGKQC
ALLTDGRFSGGTSGLSIGHASPEAANGGTIGLVRSGDSIAIDIPNRSITLEVSESELA
ARRAEQDKLGWKPVDRQRTVSLALKAYASMATSADKGAVRDKSKLEG"
misc_feature complement(24795..26630)
/locus_tag="O3Y_00130"
/note="dihydroxy-acid dehydratase; Provisional; Region:
PRK12448"
/db_xref="CDD:237104"
gene complement(26643..27581)
/locus_tag="O3Y_00135"
/db_xref="GeneID:11912962"
CDS complement(26643..27581)
/locus_tag="O3Y_00135"
/EC_number="2.6.1.42"
/note="COG0115 Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid aminotransferase"
/protein_id="YP_005331904.1"
/db_xref="GI:379739935"
/db_xref="GeneID:11912962"
/translation="MATKTADYIWFNGEMIPWANATVHVLTHAMHYGTSVFEGVRCYN
TPKGPIIFRHREHAQRLLDSAKIYRFPIPYSIETIMEATRETLRVNKLDNAYIRPLAY
VGNVGLGVCPPVGTEMDLMIAAFPWGAYLGEEALENGVDAMVSSWHRAAPNTIPTAAK
AGGNYLSSLLVGGEARRHGYAEGIALSVDGYLSEGAGENIFVVKNGVILTPPTTSSIL
PGITRDSIMTLARDMGYEVREANISREALYLADEIFMTGTAAEVVPVRSVDKITVGAG
KRGPITKVVQDAYFGLFKGTTEDKWGWLDYVYPAAK"
misc_feature complement(26691..27566)
/locus_tag="O3Y_00135"
/note="Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism];
Region: IlvE; COG0115"
/db_xref="CDD:223193"
misc_feature complement(26697..27518)
/locus_tag="O3Y_00135"
/note="BCAT_beta_family: Branched-chain aminotransferase
catalyses the transamination of the branched-chain amino
acids leusine, isoleucine and valine to their respective
alpha-keto acids, alpha-ketoisocaproate,
alpha-keto-beta-methylvalerate and...; Region:
BCAT_beta_family; cd01557"
/db_xref="CDD:238798"
misc_feature complement(order(27063..27065,27075..27077,27081..27083,
27096..27098,27219..27221,27246..27248,27258..27266,
27282..27284,27288..27290,27381..27383,27471..27473,
27477..27479,27483..27497,27504..27518))
/locus_tag="O3Y_00135"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238798"
misc_feature complement(order(26808..26810,26916..26921,27000..27002,
27087..27089,27102..27104,27252..27254,27402..27404,
27471..27473,27486..27488))
/locus_tag="O3Y_00135"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:238798"
misc_feature complement(27102..27104)
/locus_tag="O3Y_00135"
/note="catalytic residue [active]"
/db_xref="CDD:238798"
gene complement(27593..27877)
/gene="ilvM"
/locus_tag="O3Y_00140"
/db_xref="GeneID:11912963"
CDS complement(27593..27877)
/gene="ilvM"
/locus_tag="O3Y_00140"
/EC_number="2.2.1.6"
/note="COG3978 Acetolactate synthase (isozyme II), small
(regulatory) subunit"
/codon_start=1
/transl_table=11
/product="acetolactate synthase 2 regulatory subunit"
/protein_id="YP_005331905.1"
/db_xref="GI:379739936"
/db_xref="GeneID:11912963"
/translation="MQRYLLDIKADDKPVLLERVLRVTHHRGFVIKQVAATQNHASKI
ASVEIIVDSDRPITTLTNQIEKLWDVRTVEVTAIRNDELPNNNLQQKICA"
misc_feature complement(27596..27877)
/gene="ilvM"
/locus_tag="O3Y_00140"
/note="Acetolactate synthase (isozyme II), small
(regulatory) subunit [Function unknown]; Region: COG3978"
/db_xref="CDD:226486"
gene complement(27889..29535)
/locus_tag="O3Y_00145"
/db_xref="GeneID:11912964"
CDS complement(27889..29535)
/locus_tag="O3Y_00145"
/EC_number="2.2.1.6"
/note="COG0028 Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase]"
/codon_start=1
/transl_table=11
/product="acetolactate synthase 2 catalytic subunit"
/protein_id="YP_005331906.1"
/db_xref="GI:379739937"
/db_xref="GeneID:11912964"
/translation="MTGAQLVVAALKQQGIKTVFGYPGGAIMPIYDALYDGGVEHILC
RHEQGAAMAAIGMARSTQKVAVCMATSGPGATNLVTGLADAFLDSVPLVAITGQVASS
HIGTDAFQEMDVIGMSLSCTKHSYLVTDINELAPTLAEAFEVAQTGRPGPVLVDIAKD
VQLGKAPVSALPSFTPPAMPHVDATHLANAQALLAQSKRPVLYVGGGVQLANATDTVR
EFLRLNPMPSVSTLKGLGTIERHDPHYLGMLGMHGTKAANLIVQECDLLIAVGARFDD
RVTGKLDTFAPHAKVIHVDIDAAEFNKLRHAHAALRGDINLILPQLELSHDISPWVHH
SESLRSGFKWRYDHPGDNIFAPLLLKQLSDMMPDSSIVSTDVGQHQMWAAQHIQPRAP
QNFISSAGLGTMGFGLPAAMGAAVARPDDQSILISGDGSFMMNVQELGTLKRRQIPVK
MVLLDNQRLGMVRQWQSLFFDGRHSETILDDNPDFVMLAKAFNIPGKTISRKEEVEPA
LREMLASKTAYLLHVLIDEEENVWPLVPPGASNTDMLENT"
misc_feature complement(27892..29535)
/locus_tag="O3Y_00145"
/note="acetolactate synthase 2 catalytic subunit;
Reviewed; Region: PRK08978"
/db_xref="CDD:181601"
misc_feature complement(29059..29523)
/locus_tag="O3Y_00145"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature complement(order(29272..29277,29284..29286,29296..29298,
29317..29319,29353..29361,29365..29370,29377..29382,
29389..29391,29398..29418,29440..29442,29452..29454,
29464..29469,29482..29484))
/locus_tag="O3Y_00145"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(order(29176..29178,29185..29187,29287..29289,
29296..29301,29305..29310,29317..29319,29392..29394,
29398..29409,29413..29415,29440..29442,29452..29454,
29461..29469))
/locus_tag="O3Y_00145"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(order(29305..29307,29317..29319,29395..29397,
29467..29469))
/locus_tag="O3Y_00145"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(28570..28977)
/locus_tag="O3Y_00145"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:215786"
misc_feature complement(27922..28464)
/locus_tag="O3Y_00145"
/note="Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the condensation
of two molecules of pyruvate to give the...; Region:
TPP_AHAS; cd02015"
/db_xref="CDD:238973"
misc_feature complement(order(28168..28170,28234..28236,28243..28251,
28324..28326,28330..28332,28399..28410))
/locus_tag="O3Y_00145"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:238973"
misc_feature complement(order(28063..28065,28072..28074,28084..28089,
28204..28206,28225..28230,28234..28239,28324..28326,
28330..28332,28339..28341))
/locus_tag="O3Y_00145"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238973"
gene 30069..31592
/locus_tag="O3Y_00150"
/db_xref="GeneID:11912965"
CDS 30069..31592
/locus_tag="O3Y_00150"
/note="COG0606 Predicted ATPase with chaperone activity"
/codon_start=1
/transl_table=11
/product="magnesium chelatase family protein"
/protein_id="YP_005331907.1"
/db_xref="GI:379739938"
/db_xref="GeneID:11912965"
/translation="MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKE
SRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGRFDLPIALGILAASDQIARNKLE
SYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQTRDLQDIIGQQQGKRALEIAAAGNHNLLFLG
PPGTGKTMLASRLCDLLPEMSDEEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSM
AALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLESGEIVISRAQGKTR
FPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKG
TLANGGDRGESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLES
ALHRLGLSIRAYHRIIKVARTIADLQGEAQIARPHLAEALGYRAMDRLLKQLSAQNV"
misc_feature 30111..31562
/locus_tag="O3Y_00150"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:223679"
misc_feature 30129..30494
/locus_tag="O3Y_00150"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature 30651..31229
/locus_tag="O3Y_00150"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 30720..30743
/locus_tag="O3Y_00150"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(30723..30746,30972..30974,31104..31106)
/locus_tag="O3Y_00150"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 30960..30977
/locus_tag="O3Y_00150"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 31203..31205
/locus_tag="O3Y_00150"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 31266..31547
/locus_tag="O3Y_00150"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:222052"
gene 31682..32566
/locus_tag="O3Y_00155"
/db_xref="GeneID:11912966"
CDS 31682..32566
/locus_tag="O3Y_00155"
/note="COG0204 1-acyl-sn-glycerol-3-phosphate
acyltransferase"
/codon_start=1
/transl_table=11
/product="acyltransferase"
/protein_id="YP_005331908.1"
/db_xref="GI:379739939"
/db_xref="GeneID:11912966"
/translation="MLAYLLLTLNVTVVVLNSAFHSLLICLIALIKLLLPSAAWKAQA
TQAANWVMWSWASVNAWVLQLSNRVEWDIQGGETLTKQGWYLLISNHLSWTDIVVLCC
VFKDRIPMPKFFLKQQLLYVPFIGMACWALDMPFMRRYSREYLLRHPHKRGQDLATTR
RSCEKFRAVPTTVVNYVEGTRFNTQKQQRSGVGYQHVLQPKTGGIAYTLAAMGEQFEH
IIDVTLAYPDNRQQPFRDLLMGRMQRIVVHIDLLPVDEQVQGDYFNDKQFKRQFQLWL
SEVWQRKDQRLEQIYKAD"
misc_feature 31826..32530
/locus_tag="O3Y_00155"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:223282"
misc_feature 31862..32431
/locus_tag="O3Y_00155"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LCLAT1-like; Region:
LPLAT_LCLAT1-like; cd07990"
/db_xref="CDD:153252"
misc_feature order(31952..31954,31961..31963,31967..31969,32024..32035,
32216..32224)
/locus_tag="O3Y_00155"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153252"
gene complement(32644..33246)
/locus_tag="O3Y_00160"
/db_xref="GeneID:11912967"
CDS complement(32644..33246)
/locus_tag="O3Y_00160"
/note="COG0526 Thiol-disulfide isomerase and thioredoxins"
/codon_start=1
/transl_table=11
/product="periplasmic thiol:disulfide interchange protein
DsbA"
/protein_id="YP_005331909.1"
/db_xref="GI:379739940"
/db_xref="GeneID:11912967"
/translation="MKKLFALVATLMLSVSAYAAQFKEGEHYQVLKTPASSSPVVNEF
FSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVED
KMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQ
DSGLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVNYLLTLK"
misc_feature complement(32662..33177)
/locus_tag="O3Y_00160"
/note="DsbA family, DsbA subfamily; DsbA is a monomeric
thiol disulfide oxidoreductase protein containing a redox
active CXXC motif imbedded in a TRX fold. It is involved
in the oxidative protein folding pathway in prokaryotes,
and is the strongest thiol...; Region: DsbA_DsbA; cd03019"
/db_xref="CDD:239317"
misc_feature complement(32674..33129)
/locus_tag="O3Y_00160"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:216433"
misc_feature complement(order(32743..32745,33091..33096,33100..33102))
/locus_tag="O3Y_00160"
/note="catalytic residues [active]"
/db_xref="CDD:239317"
misc_feature complement(33004..33012)
/locus_tag="O3Y_00160"
/note="hinge region; other site"
/db_xref="CDD:239317"
misc_feature complement(order(32809..32838,32854..32880,32890..32949,
32962..32988))
/locus_tag="O3Y_00160"
/note="alpha helical domain; other site"
/db_xref="CDD:239317"
gene complement(33277..34263)
/locus_tag="O3Y_00165"
/db_xref="GeneID:11912968"
CDS complement(33277..34263)
/locus_tag="O3Y_00165"
/note="COG2334 Putative homoserine kinase type II (protein
kinase fold)"
/codon_start=1
/transl_table=11
/product="serine/threonine protein kinase"
/protein_id="YP_005331910.1"
/db_xref="GI:379739941"
/db_xref="GeneID:11912968"
/translation="MTQTTFHFDALTPDLIWYALESIGIRAESGFLPLNSYENRVYQF
TDEERRRFVVKFYRPQRWTDEQIQEEHDFALELEQEEIPIVPPLRLNGATLHHYQGYR
FALFTSMGGRQYEVDNEEHLEWVGRFLGRIHKVGASKPFLHRPTLSLDEYLHQPRHTL
EYSHCIPAHLQRVFFHDLDILIAEIKQHWVPTQPQIRLHGDCHPGNILWRDGPMFVDL
DDARNGPAIQDLWMLLHGDRQDKLIQLDIVLEGYQEFCDFNPQQLKLIEPLRGLRMVH
YMAWLAKRWQDPAFPIAFPWFNDAKYWENQILAFKEQIATLQEPPLSLQPQW"
misc_feature complement(33289..34263)
/locus_tag="O3Y_00165"
/note="Putative homoserine kinase type II (protein kinase
fold) [General function prediction only]; Region: COG2334"
/db_xref="CDD:225213"
misc_feature complement(33292..34263)
/locus_tag="O3Y_00165"
/note="serine/threonine protein kinase; Provisional;
Region: PRK11768"
/db_xref="CDD:236974"
gene complement(34311..35735)
/locus_tag="O3Y_00170"
/db_xref="GeneID:11912969"
CDS complement(34311..35735)
/locus_tag="O3Y_00170"
/note="COG0348 Polyferredoxin"
/codon_start=1
/transl_table=11
/product="FixG-likeprotein"
/protein_id="YP_005331911.1"
/db_xref="GI:379739942"
/db_xref="GeneID:11912969"
/translation="MSQDKIDVKDVTPKVFNPKTHKGQGGDRFNPSNRIYVRESKGTY
QKLRRYGGWFLLLLFGLVPWISYGDRQAILLDIGNQQFNFFGTTLYPQDLTLLALLFM
IAAFGLFFITTFLGRVWCGYLCPQTVWTFMYIWFEEKLEGNANKRRKQDNSPMTAELV
ARKTLKHIAWLAIALVTGFTFVGYFVPIRALVIDFFTLSAAFWPVFWVLFFALCTYGN
AGWMRSIMCIHMCPYARFQSAMFDKDTFIVGYDVARGEQRGPRSRKADPKALGLGDCI
DCDLCVQVCPTGIDIRDGLQYECINCGACIDACDNTMERMGYAKGLISYTTEHRLSGK
HTKVMRPKLLGYGAVFLVMIGLFFAQVAAVDPAGLTVLRDRTQLFRTNSSGEIENTYN
LKVINKTQQPQTYQLSVKGLDPVSWYGKQSVVVQPGEVLNLPMTLGAKPENLSSAVTT
IQFILHDESHQFTLEVESRFIQKL"
misc_feature complement(34320..35606)
/locus_tag="O3Y_00170"
/note="cytochrome c oxidase accessory protein FixG;
Region: ccoG_rdxA_fixG; TIGR02745"
/db_xref="CDD:233993"
misc_feature complement(<35346..35447)
/locus_tag="O3Y_00170"
/note="4Fe-4S binding domain; Region: Fer4_5; pfam12801"
/db_xref="CDD:221777"
misc_feature complement(<34809..>34982)
/locus_tag="O3Y_00170"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:246686"
misc_feature complement(34323..34667)
/locus_tag="O3Y_00170"
/note="Ubp3 associated protein Bre5; Region: Bre5;
pfam11614"
/db_xref="CDD:221151"
gene complement(36152..36418)
/locus_tag="O3Y_00175"
/db_xref="GeneID:11912970"
CDS complement(36152..36418)
/locus_tag="O3Y_00175"
/note="COG3084 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331912.1"
/db_xref="GI:379739943"
/db_xref="GeneID:11912970"
/translation="MKCHRVEELLQLLEPEWHKDSELNLIQFLLKLAQEAGYQGALED
LTDDVLIYHLKMRNSAKDAVIPGLKKDYEDDFKTAILRARGIIK"
misc_feature complement(36161..36418)
/locus_tag="O3Y_00175"
/note="Protein of unknown function (DUF1040); Region:
DUF1040; pfam06288"
/db_xref="CDD:148100"
gene 36979..37770
/locus_tag="O3Y_00180"
/db_xref="GeneID:11912971"
CDS 36979..37770
/locus_tag="O3Y_00180"
/note="COG4326 Sporulation control protein"
/codon_start=1
/transl_table=11
/product="SpoOM-likeprotein"
/protein_id="YP_005331913.1"
/db_xref="GI:379739944"
/db_xref="GeneID:11912971"
/translation="MSFIKKTLASFGIGSAKVDSVLQQEVLYPGQSVKVIIHVYGGAT
AQVIDNIELKLCCCYIAEVADERGQQQGQPMRRVPHTYTLANWSLPYAFTIEAGETRN
FDIELSIPWNTPVTIGDAKVWLETGLDIALALDPTDKDILTVRPEPMMDGIFSALEAQ
GLRLRQVECEQAKGFALPFVQEFEFVPTTGPFQGRWREVEIVAYRDPEALQLWFEVDR
YQRGASGMLASLLGRGELKRHLTLPARTSPQEAGEQVLAFLDRSC"
misc_feature 36979..37767
/locus_tag="O3Y_00180"
/note="Sporulation control protein [General function
prediction only]; Region: Spo0M; COG4326"
/db_xref="CDD:226776"
misc_feature 36988..37665
/locus_tag="O3Y_00180"
/note="SpoOM protein; Region: Spo0M; pfam07070"
/db_xref="CDD:115706"
gene 37854..38495
/locus_tag="O3Y_00185"
/db_xref="GeneID:11912972"
CDS 37854..38495
/locus_tag="O3Y_00185"
/note="COG1272 Predicted membrane protein, hemolysin III
homolog"
/codon_start=1
/transl_table=11
/product="hemolysin"
/protein_id="YP_005331914.1"
/db_xref="GI:379739945"
/db_xref="GeneID:11912972"
/translation="MSNSYGFKEEVANAISHGVGLILGIVGLVLLLVKAVDQQADALT
ITSMSIYGGSMIALFLASTLYHAIPYQRAKRWLKTFDHCAIYLLIAGSYTPFLLVSLR
TPLAVGLMIVIWSLALIGILMKIAFVYRFKKLSLVTYLTMGWLSLIVIYQLAIHLEVG
GLTLLAAGGLIYSLGVIFYVAKRIPYNHAIWHAFVLAGCACHFLAIYLYVEPI"
misc_feature 37854..38492
/locus_tag="O3Y_00185"
/note="hemolysin; Provisional; Region: PRK15087"
/db_xref="CDD:185044"
misc_feature 37878..38483
/locus_tag="O3Y_00185"
/note="channel protein, hemolysin III family; Region:
hlyIII; TIGR01065"
/db_xref="CDD:233258"
gene complement(38534..39091)
/locus_tag="O3Y_00190"
/db_xref="GeneID:11912973"
CDS complement(38534..39091)
/locus_tag="O3Y_00190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331915.1"
/db_xref="GI:379739946"
/db_xref="GeneID:11912973"
/translation="MKKLILVASIVSLSTWASETLQLKDGRYIQLNDDFTWQYVPQET
QPQQTSELAPLVLAAPVIAQPTLSGVTITVGDHRPVLQLSDSGVDVVLSAPRYEHGQL
KLSSAITNQSSQSVIAVRLAIRVQDAQGVWSEEQEVTIWQSIKRMAETYLRPRTSVEG
KPLELNLAEQSQYTLHATIKQIETR"
misc_feature complement(38540..39091)
/locus_tag="O3Y_00190"
/note="Protein of unknown function (DUF3157); Region:
DUF3157; pfam11355"
/db_xref="CDD:221091"
gene complement(39103..40548)
/locus_tag="O3Y_00195"
/db_xref="GeneID:11912974"
CDS complement(39103..40548)
/locus_tag="O3Y_00195"
/note="COG0168 Trk-type K+ transport systems, membrane
components"
/codon_start=1
/transl_table=11
/product="potassium uptake protein TrkH"
/protein_id="YP_005331916.1"
/db_xref="GI:379739947"
/db_xref="GeneID:11912974"
/translation="MLNLRPITFIIGLVLSKLALFMYVPTLVAFFTGSGGFLDFAQAV
IITHLVAFLCLSIGRTEHFRLNVRDMFLITSLVWTIASAFAALPFVFINHISFTDAYF
ETMSGLTTTGSTVLSGLDDMPPSILLWRSILQWLGGVGFIVMAVAVLPMLNVGGMKLF
QTESSDWSDKSSPRAKTVAKNIVAVYLVLTGLCFLSYIATGMTPFEAINHAFTTLSTG
GYSTSDSSMNRFSHGAHWVGTLFMFLGGLPFLLFVQALRKQSARALLKDEQVRGFFWL
FMISSLLVAGWLWLKNDYAILDALRVSMFNIVSVVTTTGYGLDDFTAWGALPSTIFAF
LLMAGACSGSTSGGIKVFRFQIAMALLKKQLLNLIHPSGIFIQRYNKRPVNEEIIRSV
VAFGLTFFITIVVLAGALSAMGLDSVTSISGAVTAVANVGPGMGSIIGPTGNFAPLPD
AAKWLLSFGMLMGRLEILTILVLFFPAFWRH"
misc_feature complement(39106..40542)
/locus_tag="O3Y_00195"
/note="Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: TrkG;
COG0168"
/db_xref="CDD:223246"
misc_feature complement(39157..40299)
/locus_tag="O3Y_00195"
/note="potassium uptake protein, TrkH family; Region:
2a38; TIGR00933"
/db_xref="CDD:233196"
gene complement(40560..41936)
/gene="trkA"
/locus_tag="O3Y_00200"
/db_xref="GeneID:11912975"
CDS complement(40560..41936)
/gene="trkA"
/locus_tag="O3Y_00200"
/note="COG0569 K+ transport systems, NAD-binding
component"
/codon_start=1
/transl_table=11
/product="potassium transporter peripheral membrane
protein"
/protein_id="YP_005331917.1"
/db_xref="GI:379739948"
/db_xref="GeneID:11912975"
/translation="MKIIILGAGQVGGTLAENLVGENNDITVVDKNADRLRDLQDKYD
LRVVNGHASHPDVLREAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSP
QYLAEKEALFQSGAVPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEEKVSLVAVKA
YYGGPLVGNALSALRDHMPHIDTRVAAIFRQGRPIRPQGTTIIEADDEVFFVAASNHI
RSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIEHNYQRAEQLSEQLEN
TIVFCGDAADQELLSEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKAMVLIQRSG
YVDLVQGGVIDVAISPQQATISALLTHVRRADIVNVSSLRRGAAEAIEAIAHGDESTS
KVVGRAVGDIKLPPGTTIGAIVRGEEVLIAHDRTVIEQDDHVVMFLVDKKYVPDVETL
FQPSPFFL"
misc_feature complement(40569..41936)
/gene="trkA"
/locus_tag="O3Y_00200"
/note="potassium transporter peripheral membrane
component; Reviewed; Region: trkA; PRK09496"
/db_xref="CDD:236541"
misc_feature complement(41562..41930)
/gene="trkA"
/locus_tag="O3Y_00200"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:216949"
misc_feature complement(41259..41474)
/gene="trkA"
/locus_tag="O3Y_00200"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:216867"
misc_feature complement(40887..41234)
/gene="trkA"
/locus_tag="O3Y_00200"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:216949"
misc_feature complement(40581..40772)
/gene="trkA"
/locus_tag="O3Y_00200"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:216867"
gene complement(41998..43278)
/locus_tag="O3Y_00205"
/db_xref="GeneID:11912976"
CDS complement(41998..43278)
/locus_tag="O3Y_00205"
/note="COG0144 tRNA and rRNA cytosine-C5-methylases"
/codon_start=1
/transl_table=11
/product="16S rRNA methyltransferase B"
/protein_id="YP_005331918.1"
/db_xref="GI:379739949"
/db_xref="GeneID:11912976"
/translation="MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEIC
YGVLRQLPRLESISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGA
QDLKGPRLRGLINAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQ
IVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLP
GFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCD
ETRLKRVRENLQRLELTAQVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDI
KWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPD
ARLVGSDPAQPGRQILPGEEAMDGFYYAVLSKQH"
misc_feature complement(42004..43278)
/locus_tag="O3Y_00205"
/note="16S rRNA methyltransferase B; Provisional; Region:
PRK10901"
/db_xref="CDD:236790"
misc_feature complement(42904..43278)
/locus_tag="O3Y_00205"
/note="N-terminal RNA binding domain of the
methyltransferase Sun. The rRNA-specific 5-methylcytidine
transferase Sun, also known as RrmB or Fmu shares the
RNA-binding non-catalytic domain with the transcription
termination factor NusB. The precise biological...;
Region: Methyltransferase_Sun; cd00620"
/db_xref="CDD:238343"
misc_feature complement(43267..43278)
/locus_tag="O3Y_00205"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238343"
misc_feature complement(42172..42540)
/locus_tag="O3Y_00205"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(42322..42324,42376..42384,42454..42459,
42511..42531))
/locus_tag="O3Y_00205"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(43334..44281)
/gene="fmt"
/locus_tag="O3Y_00210"
/db_xref="GeneID:11912977"
CDS complement(43334..44281)
/gene="fmt"
/locus_tag="O3Y_00210"
/EC_number="2.1.2.9"
/note="COG0223 Methionyl-tRNA formyltransferase"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_005331919.1"
/db_xref="GI:379739950"
/db_xref="GeneID:11912977"
/translation="MSQSLRIVFAGTPDFAARHLAALLSSEHEIIAVYTQPERPAGRG
KKLTASPVKTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAYGLLLPKVVLDT
PKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIMQMDVGLDTGDMLKIATLPIE
ASDTSASMYDKLAELGPQALLECLQDIAQGTAVAVKQDDGLANYAHKLSKEEARINWS
DAATHIERCIRAFNPWPMSHFEVAENSIKVWQARVETRAVTQTPGTIIQADKSGIYVA
TGQDVLVLESLQIPGKKALPVQDILNARADWFSVGSQLS"
misc_feature complement(43337..44269)
/gene="fmt"
/locus_tag="O3Y_00210"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:234567"
misc_feature complement(43658..44269)
/gene="fmt"
/locus_tag="O3Y_00210"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature complement(order(43841..43846,43853..43858,43862..43864,
43922..43924,43946..43957,43982..43984,43997..44020,
44234..44239,44249..44251))
/gene="fmt"
/locus_tag="O3Y_00210"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature complement(order(43661..43663,43916..43924,43946..43951,
43955..43957,44006..44017,44147..44158,44162..44164,
44174..44176,44237..44239,44243..44248))
/gene="fmt"
/locus_tag="O3Y_00210"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature complement(order(43841..43846,43853..43858,43955..43957,
43982..43984,43997..44005,44009..44011,44018..44020))
/gene="fmt"
/locus_tag="O3Y_00210"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature complement(order(43841..43843,43949..43951,43955..43957))
/gene="fmt"
/locus_tag="O3Y_00210"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature complement(43391..43651)
/gene="fmt"
/locus_tag="O3Y_00210"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature complement(order(43397..43399,43403..43408,43412..43414,
43418..43420,43541..43543,43547..43549,43580..43582))
/gene="fmt"
/locus_tag="O3Y_00210"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene complement(44299..44808)
/gene="def"
/locus_tag="O3Y_00215"
/db_xref="GeneID:11912978"
CDS complement(44299..44808)
/gene="def"
/locus_tag="O3Y_00215"
/EC_number="3.5.1.88"
/note="COG0242 N-formylmethionyl-tRNA deformylase"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="YP_005331920.1"
/db_xref="GI:379739951"
/db_xref="GeneID:11912978"
/translation="MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEG
IGLAATQVDIHQRIVVIDISETRDQPMVLINPEIIEKRGEDGIEEGCLSVPGARALVP
RAAEVTVKALDRNGQEYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLE
KIKRFNEKK"
misc_feature complement(44380..44793)
/gene="def"
/locus_tag="O3Y_00215"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:238271"
misc_feature complement(order(44398..44400,44407..44412,44533..44541,
44656..44658,44671..44679))
/gene="def"
/locus_tag="O3Y_00215"
/note="active site"
/db_xref="CDD:238271"
misc_feature complement(order(44407..44409,44533..44535,44656..44658,
44671..44673))
/gene="def"
/locus_tag="O3Y_00215"
/note="catalytic residues [active]"
/db_xref="CDD:238271"
misc_feature complement(order(44398..44400,44410..44412,44536..44538))
/gene="def"
/locus_tag="O3Y_00215"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238271"
gene 44948..46075
/locus_tag="O3Y_00220"
/db_xref="GeneID:11912979"
CDS 44948..46075
/locus_tag="O3Y_00220"
/note="COG1652 Uncharacterized protein containing LysM
domain"
/codon_start=1
/transl_table=11
/product="LysM domain-containing protein"
/protein_id="YP_005331921.1"
/db_xref="GI:379739952"
/db_xref="GeneID:11912979"
/translation="MARLTRYITYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVK
GDTLWDISALYLDSPWLWPRLWQVNPEIDNPHLIYPGDKLTLFWRDGQPELSLKPMRK
LSPQVRVLEKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRVIGSSEGRQYLTKQDQL
YISGVHSEKKWGIYREVAQYQRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEIL
ANDIALPEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDG
VAQGSMFELYQAAVQVKAKQDSSTFLSERSNTDVQLPSVKVGALMVIRPYERFSLALI
TNSSAPISAEVHALSPQAEPQTEQPDVVQLSEQIDLVDDAS"
misc_feature <45005..45205
/locus_tag="O3Y_00220"
/note="Uncharacterized protein containing LysM domain
[Function unknown]; Region: XkdP; COG1652"
/db_xref="CDD:224566"
misc_feature 45059..45205
/locus_tag="O3Y_00220"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 45164..46063
/locus_tag="O3Y_00220"
/note="Uncharacterized protein containing LysM domain
[Function unknown]; Region: XkdP; COG1652"
/db_xref="CDD:224566"
gene 46075..47190
/locus_tag="O3Y_00225"
/db_xref="GeneID:11912980"
CDS 46075..47190
/locus_tag="O3Y_00225"
/note="COG0758 Predicted Rossmann fold nucleotide-binding
protein involved in DNA uptake"
/codon_start=1
/transl_table=11
/product="DNA processing protein"
/protein_id="YP_005331922.1"
/db_xref="GI:379739953"
/db_xref="GeneID:11912980"
/translation="MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWL
ACGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIVTPHCPLYPRLLKEINSSPPVLF
IEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRI
ISGLSLGVVVVEAAEKSGSLITARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACL
VQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQSDEELPFPELLANVGIEATPIDIL
ASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG"
misc_feature 46075..47178
/locus_tag="O3Y_00225"
/note="Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion];
Region: Smf; COG0758"
/db_xref="CDD:223829"
misc_feature 46276..46935
/locus_tag="O3Y_00225"
/note="DNA protecting protein DprA; Region: dprA;
TIGR00732"
/db_xref="CDD:129815"
gene 47196..47669
/locus_tag="O3Y_00230"
/db_xref="GeneID:11912981"
CDS 47196..47669
/locus_tag="O3Y_00230"
/note="COG2922 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331923.1"
/db_xref="GI:379739954"
/db_xref="GeneID:11912981"
/translation="MMDILMYLFETYVHSDADLQVDQDQLEDELLRAGFHQKDIYKAL
HWLEELAALQQTDAQTAIAKSAPTSMRIYAPEEIERLDLESRGFLLFLEHINVLTPET
REMVIDRVMGLETDEFELDDLKWIILMVLFNVPGNENAYTVMEELLYSKEQGILH"
misc_feature 47196..47666
/locus_tag="O3Y_00230"
/note="hypothetical protein; Validated; Region: PRK03430"
/db_xref="CDD:235125"
gene 47685..48251
/locus_tag="O3Y_00235"
/db_xref="GeneID:11912982"
CDS 47685..48251
/locus_tag="O3Y_00235"
/note="COG0551 Zn-finger domain associated with
topoisomerase type I"
/codon_start=1
/transl_table=11
/product="topoisomerase DNA-binding C4 zinc finger
domain-containing protein"
/protein_id="YP_005331924.1"
/db_xref="GI:379739955"
/db_xref="GeneID:11912982"
/translation="MSRKIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLGCTA
YPECDYIKPLHQNDGHIIKELGVPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESMD
SPSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNSKPIAQACAQCG
FTVMVEKKSAAGMRYQCANRQCGHIQEC"
misc_feature 47748..47855
/locus_tag="O3Y_00235"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 47868..48248
/locus_tag="O3Y_00235"
/note="Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair]; Region:
TopA; COG0551"
/db_xref="CDD:223625"
misc_feature 47880..47984
/locus_tag="O3Y_00235"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 48018..48140
/locus_tag="O3Y_00235"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
gene complement(48324..49457)
/locus_tag="O3Y_00240"
/db_xref="GeneID:11912983"
CDS complement(48324..49457)
/locus_tag="O3Y_00240"
/EC_number="4.1.1.21"
/note="COG0026 Phosphoribosylaminoimidazole carboxylase
(NCAIR synthetase)"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase ATPase
subunit"
/protein_id="YP_005331925.1"
/db_xref="GI:379739956"
/db_xref="GeneID:11912983"
/translation="MRVLVLGAGQLARMMSLAGAPLNIETIAFDVGSENIVHPLTQTV
LGHGLEQAIEQVDVITAEFEHIPHPILDLCARSGKLYPSAEAIKAGGDRRLEKALLDR
AQVANARYTMIRSRDDLTSAIAEIGLPMVLKSALGGYDGKGQWRLKEPTQIESVWQEL
AQYLAANPEQAIVAEEFVAFDREVSLVGARNLVGDVVVYPLAENVHTQGVLSLSTAID
APALQTQAKAMFKAVAEQLNYVGVLALEFFEVQGQLLVNEIAPRVHNSGHWTQQGAET
CQFENHLRAVCGLPLGSTKLVRETAMINILGEDQLPAEVLALEGCHVHWYGKAKRSGR
KMGHINVTADYSGELQRKLCQLATVLDEKAFPAVHAVAKEIQP"
misc_feature complement(48387..49457)
/locus_tag="O3Y_00240"
/note="phosphoribosylaminoimidazole carboxylase ATPase
subunit; Reviewed; Region: PRK06019"
/db_xref="CDD:235674"
misc_feature complement(48636..49160)
/locus_tag="O3Y_00240"
/note="ATP-grasp domain; Region: ATP-grasp; pfam02222"
/db_xref="CDD:216935"
gene complement(49461..49946)
/locus_tag="O3Y_00245"
/db_xref="GeneID:11912984"
CDS complement(49461..49946)
/locus_tag="O3Y_00245"
/note="COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR)
mutase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase
catalytic subunit"
/protein_id="YP_005331926.1"
/db_xref="GI:379739957"
/db_xref="GeneID:11912984"
/translation="MTVGIIMGSKSDWPTMKHAAEMLDQFGVAYETKVVSAHRTPHLL
ADYASSAKERGLQVIIAGAGGAAHLPGMTAAFTSLPVLGVPVQSRALSGLDSLYSIVQ
MPKGIAVGTLAIGEAGAANAGLLAAQIIGIHNPEVMSKVEAFRAKQTQSVLDNPNPAE
E"
misc_feature complement(49464..49946)
/locus_tag="O3Y_00245"
/note="Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
[Nucleotide transport and metabolism]; Region: PurE;
COG0041"
/db_xref="CDD:223119"
gene 50104..50670
/locus_tag="O3Y_00250"
/db_xref="GeneID:11912985"
CDS 50104..50670
/locus_tag="O3Y_00250"
/note="COG0009 Putative translation factor (SUA5)"
/codon_start=1
/transl_table=11
/product="Sua5/YciO/YrdC family protein"
/protein_id="YP_005331927.1"
/db_xref="GI:379739958"
/db_xref="GeneID:11912985"
/translation="MALVENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLL
AIKQRPVEKGVILIAASYAQLRPYVDETQLTAEQLTQVLASWPAPLTWVMPASGDTPS
WVRGQFDTVAVRVSDHPVVQKLCLAFGKPLTSTSANLSGQPACVTQQEVMVQLGNQIA
VVVEGKTSGRHGPSEIRDARSLQVLRQG"
misc_feature 50122..50667
/locus_tag="O3Y_00250"
/note="Telomere recombination; Region: Sua5_yciO_yrdC;
cl00305"
/db_xref="CDD:206970"
gene 50689..51606
/locus_tag="O3Y_00255"
/db_xref="GeneID:11912986"
CDS 50689..51606
/locus_tag="O3Y_00255"
/EC_number="1.3.3.3"
/note="COG0408 Coproporphyrinogen III oxidase"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_005331928.1"
/db_xref="GI:379739959"
/db_xref="GeneID:11912986"
/translation="MESIVDKQAVKHFLLQLQDKICQQLEATDGQAQFIEDAWQREPG
EKLGGGGRTRVMREGAVFEQGGVNFSHVFGEQMPASATAHRPELAGRRFEAMGVSLVM
HPKNPYVPTSHANVRFFIAEKEGEAPIWWFGGGFDLTPFYPFVEDGQHWHQTAKNICA
PFGSEIYNEHKAWCDRYFYLPHRNETRGIGGLFFDDLNEWSFEQCFAYMQAVGEGYTQ
AYVPIVEKRKNTPFTERERQFQLYRRGRYVEFNLVLDRGTLFGLQTGGRTESILMSMP
PLARWEYAYQPQAGTPEAKLSEFLVPREW"
misc_feature 50689..51603
/locus_tag="O3Y_00255"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK05330"
/db_xref="CDD:235413"
misc_feature 50710..51603
/locus_tag="O3Y_00255"
/note="Coproporphyrinogen III oxidase; Region:
Coprogen_oxidas; pfam01218"
/db_xref="CDD:216370"
gene 51668..52504
/gene="aroE"
/locus_tag="O3Y_00260"
/db_xref="GeneID:11912987"
CDS 51668..52504
/gene="aroE"
/locus_tag="O3Y_00260"
/EC_number="1.1.1.25"
/note="COG0169 Shikimate 5-dehydrogenase"
/codon_start=1
/transl_table=11
/product="shikimate 5-dehydrogenase"
/protein_id="YP_005331929.1"
/db_xref="GI:379739960"
/db_xref="GeneID:11912987"
/translation="MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPV
DGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILG
DNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKA
EQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMM
YGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEG
AL"
misc_feature 51668..52495
/gene="aroE"
/locus_tag="O3Y_00260"
/note="shikimate 5-dehydrogenase; Reviewed; Region: aroE;
PRK00258"
/db_xref="CDD:234703"
misc_feature 51695..51943
/gene="aroE"
/locus_tag="O3Y_00260"
/note="Shikimate dehydrogenase substrate binding domain;
Region: Shikimate_dh_N; pfam08501"
/db_xref="CDD:149523"
misc_feature 51980..52441
/gene="aroE"
/locus_tag="O3Y_00260"
/note="NAD(P) binding domain of Shikimate dehydrogenase;
Region: NAD_bind_Shikimate_DH; cd01065"
/db_xref="CDD:133443"
misc_feature order(51983..51985,52322..52324,52400..52402,52409..52411)
/gene="aroE"
/locus_tag="O3Y_00260"
/note="shikimate binding site; other site"
/db_xref="CDD:133443"
misc_feature order(52058..52060,52067..52069,52127..52132,52238..52246,
52316..52318,52388..52390,52397..52402)
/gene="aroE"
/locus_tag="O3Y_00260"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133443"
gene 52501..52776
/locus_tag="O3Y_00265"
/db_xref="GeneID:11912988"
CDS 52501..52776
/locus_tag="O3Y_00265"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331930.1"
/db_xref="GI:379739961"
/db_xref="GeneID:11912988"
/translation="MNQSILFPDLQHWDEAKQAVVFFAQQNGALIECLVARQVLQELS
GEALAESQHVMTAFSEWRFDLEELAEQAIENEMFNSLGQIEITRERF"
misc_feature 52510..52761
/locus_tag="O3Y_00265"
/note="Protein of unknown function (DUF1488); Region:
DUF1488; pfam07369"
/db_xref="CDD:191733"
gene complement(52757..53308)
/locus_tag="O3Y_00270"
/db_xref="GeneID:11912989"
CDS complement(52757..53308)
/locus_tag="O3Y_00270"
/note="COG0663 Carbonic anhydrases/acetyltransferases,
isoleucine patch superfamily"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase family 3"
/protein_id="YP_005331931.1"
/db_xref="GI:379739962"
/db_xref="GeneID:11912989"
/translation="MSSIRSYKGIVPKLGEGVYVDSSAVLVGDIELGDDASIWPLVAA
RGDVNHIRIGKRTNIQDGSVLHVTHKNAENPNGYPLCIGDDVTIGHKVMLHGCTIHDR
VLVGMGSIVLDGAVIENDVMIGAGSLVPPGKRLESGFLYMGSPVKQARPLNDKERAFL
VKSSSNYVQSKNDYLNDVKTVRE"
misc_feature complement(52760..53308)
/locus_tag="O3Y_00270"
/note="Carbonic anhydrases/acetyltransferases, isoleucine
patch superfamily [General function prediction only];
Region: PaaY; COG0663"
/db_xref="CDD:223735"
misc_feature complement(52802..53272)
/locus_tag="O3Y_00270"
/note="Gamma carbonic anhydrase-like: This family is
composed of gamma carbonic anhydrase (CA), Ferripyochelin
Binding Protein (FBP), E. coli paaY protein, and similar
proteins. CAs are zinc-containing enzymes that catalyze
the reversible hydration of carbon...; Region:
LbH_gamma_CA_like; cd04645"
/db_xref="CDD:100051"
misc_feature complement(order(52988..52990,53024..53026,53030..53041,
53111..53113,53123..53128,53168..53170,53174..53176,
53180..53185,53192..53194,53228..53230,53237..53242,
53246..53248,53252..53254))
/locus_tag="O3Y_00270"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100051"
misc_feature complement(order(53024..53026,53039..53041,53111..53113))
/locus_tag="O3Y_00270"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:100051"
gene 53497..53637
/locus_tag="O3Y_00275"
/db_xref="GeneID:11912990"
CDS 53497..53637
/locus_tag="O3Y_00275"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331932.1"
/db_xref="GI:379739963"
/db_xref="GeneID:11912990"
/translation="MIQLGVLGREIANENKLKKVFDTTVYLAKMAASSEADCKEERSL
TI"
gene 53817..55360
/locus_tag="O3Y_r13483"
/db_xref="GeneID:11912991"
rRNA 53817..55360
/locus_tag="O3Y_r13483"
/product="16S ribosomal RNA"
/db_xref="GeneID:11912991"
gene 55421..55496
/locus_tag="O3Y_t13277"
/db_xref="GeneID:11912992"
tRNA 55421..55496
/locus_tag="O3Y_t13277"
/product="tRNA-Ala"
/db_xref="GeneID:11912992"
gene 55782..58679
/locus_tag="O3Y_r13499"
/db_xref="GeneID:11912993"
rRNA 55782..58679
/locus_tag="O3Y_r13499"
/product="23S ribosomal RNA"
/db_xref="GeneID:11912993"
gene 58800..58915
/locus_tag="O3Y_r13465"
/db_xref="GeneID:11912994"
rRNA 58800..58915
/locus_tag="O3Y_r13465"
/product="5S ribosomal RNA"
/db_xref="GeneID:11912994"
gene 58941..59017
/locus_tag="O3Y_t13279"
/db_xref="GeneID:11912995"
tRNA 58941..59017
/locus_tag="O3Y_t13279"
/product="tRNA-Asp"
/db_xref="GeneID:11912995"
gene 59047..59123
/locus_tag="O3Y_t13281"
/db_xref="GeneID:11912996"
tRNA 59047..59123
/locus_tag="O3Y_t13281"
/product="tRNA-Trp"
/db_xref="GeneID:11912996"
gene 59356..59736
/locus_tag="O3Y_00280"
/db_xref="GeneID:11912997"
CDS 59356..59736
/locus_tag="O3Y_00280"
/note="COG0239 Integral membrane protein possibly involved
in chromosome condensation"
/codon_start=1
/transl_table=11
/product="camphor resistance protein CrcB"
/protein_id="YP_005331933.1"
/db_xref="GI:379739964"
/db_xref="GeneID:11912997"
/translation="MSFAILGFIALGGAVGACARFLVSEICVTLFGRGFPIGTLTVNV
VGSFIMGVLIACVENEWLSPYPWKQVIGLGFLGALTTFSTFSMDNVLLMQQGAFFKMG
ANVLLNVILSISAAWIGFHWLMKS"
misc_feature 59356..59733
/locus_tag="O3Y_00280"
/note="camphor resistance protein CrcB; Provisional;
Region: PRK14200"
/db_xref="CDD:237638"
gene 59988..61925
/locus_tag="O3Y_00285"
/db_xref="GeneID:11912998"
CDS 59988..61925
/locus_tag="O3Y_00285"
/note="COG0422 Thiamine biosynthesis protein ThiC"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiC"
/protein_id="YP_005331934.1"
/db_xref="GI:379739965"
/db_xref="GeneID:11912998"
/translation="MSNRKQARLEAKRFIDTLSVEPYPNSQKSYLLGSRPDIRVPVRE
ITLSDTLVGGSKDAPIFEPNEPICVYDTSGVYTDPSHDIDLYKGLPKLREEWIEERRD
THILPSMSSHFARERLADETLDELRYGHLPRIRRAMGQHRVTQLHYARQGIITPEMEF
VAIRENSRRLAHQDPSLLQQHAGQNFGAHLPDLITPEFVRREIAEGRAIIPCNINHPE
SEPMIIGRNFLVKVNANIGNSSVSSSIEEEVEKLVWATRWGADTVMDLSTGRNIHETR
EWILRNSPVPIGTVPMYQALEKVNGVAENLTWEVMRDTLLEQAEQGVDYFTIHAGLLL
RYVPMTAKRVTGIVSRGGSIIAKWCLSHHQENFLYTHFREICEICAQYDVALSLGDGL
RPGSIADANDEAQFAELRTLGELTQIAWEYDVQVMIEGPGHVPMHLIKANMDEQLKHC
HEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKT
GLITYKLAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLALDPVTARAFHDETL
PQESGKVAHFCSMCGPKFCSMKISQEVRDYANNQTLDTTVIDLVMPAESIQLAMQDKS
REFLASGAELYHPLVKEPIEE"
misc_feature 60000..61901
/locus_tag="O3Y_00285"
/note="thiamine biosynthesis protein ThiC; Provisional;
Region: PRK09284"
/db_xref="CDD:236451"
misc_feature 60048..60296
/locus_tag="O3Y_00285"
/note="ThiC-associated domain; Region: ThiC-associated;
pfam13667"
/db_xref="CDD:222303"
misc_feature 60408..61778
/locus_tag="O3Y_00285"
/note="Thiamine biosynthesis protein ThiC [Coenzyme
metabolism]; Region: ThiC; COG0422"
/db_xref="CDD:223499"
gene 61929..63251
/gene="thiE"
/locus_tag="O3Y_00290"
/db_xref="GeneID:11912999"
CDS 61929..63251
/gene="thiE"
/locus_tag="O3Y_00290"
/EC_number="2.5.1.3"
/note="COG0352 Thiamine monophosphate synthase"
/codon_start=1
/transl_table=11
/product="thiamine-phosphate pyrophosphorylase"
/protein_id="YP_005331935.1"
/db_xref="GI:379739966"
/db_xref="GeneID:11912999"
/translation="MVRLVFPRHLSALIGHVQYALLQAKEQGVAIQHIRLDVGSEAQF
ILEKSEESLRIGSSLCSQKEGFEPCDYYLDYVSENRVLPEAMMCNARCTVTVGLHDEY
GFTLDKWQYGHAAEQLIVYPSENHRLNSKVNQHLAWVLATLTLDFSIGDGLCIARAAI
TQGDSVSRETWPTQFERFPAVQSNIRSLSTQVFLTTRAFPTIDKAKFNLYPVVDDVNW
IEHLLKLGVRTVQLRIKDPKQGDLEAQIIRAIALGREFNAQVFINDHWQLAIKHQAYG
VHLGQEDLTSANLTELLDAGIRLGLSTHGYYELLIAAGIQPSYIALGHIFPTTTKQMP
SKPQGLVRLAAYQRLVNQMPYQGQHGIPTVAIGGIDCRNIRDVLDCGVTAVAVVRAIT
ESPDPSLAVQALSSAFADFVDAEYKLMPASESCEPLSYLAMEVADAHR"
misc_feature 61929..63242
/gene="thiE"
/locus_tag="O3Y_00290"
/note="thiamine-phosphate pyrophosphorylase; Reviewed;
Region: thiE; PRK12290"
/db_xref="CDD:237041"
misc_feature 62553..63140
/gene="thiE"
/locus_tag="O3Y_00290"
/note="Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution of
the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
Region: TMP_TenI; cd00564"
/db_xref="CDD:238317"
misc_feature order(62556..62558,62562..62564,62619..62621,62625..62627,
62760..62762,62832..62834,62883..62885,62889..62891,
62910..62912,62916..62918,63018..63020,63030..63032,
63084..63095)
/gene="thiE"
/locus_tag="O3Y_00290"
/note="thiamine phosphate binding site [chemical binding];
other site"
/db_xref="CDD:238317"
misc_feature order(62619..62621,62625..62627,62631..62633,62715..62720,
62775..62777,62832..62834,62910..62912,62916..62921,
63030..63032,63090..63095)
/gene="thiE"
/locus_tag="O3Y_00290"
/note="active site"
/db_xref="CDD:238317"
misc_feature order(62625..62627,62631..62633,62715..62720,62766..62768,
62775..62777,62832..62834,62919..62921)
/gene="thiE"
/locus_tag="O3Y_00290"
/note="pyrophosphate binding site [ion binding]; other
site"
/db_xref="CDD:238317"
gene 63238..64014
/locus_tag="O3Y_00295"
/db_xref="GeneID:11913000"
CDS 63238..64014
/locus_tag="O3Y_00295"
/note="COG0476 Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2"
/codon_start=1
/transl_table=11
/product="ThiF protein"
/protein_id="YP_005331936.1"
/db_xref="GI:379739967"
/db_xref="GeneID:11913000"
/translation="MLTDKQFLRYQRQISLAELGEEGQQKLLNSRVLIVGCGGLGNVV
APYLVGAGVGQVIIADSDRLELHNLHRQICYHEAQIGHNKAELLARYLRELNSEVRVR
VIAREVDELILNLEINQVDLVLDCSDNLPTRHAINRACYAAQRPLISGAVIGWEGHLM
AFDYRQSTPCYQCVVPDMAERQRCSDRGVIGPVVGMIGNGQALIALHALMGSAHFPAN
QLLRFDGKSMNWQSLQLHPDKVCPVCSVSSPAQPKEPQPC"
misc_feature 63262..63942
/locus_tag="O3Y_00295"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:238386"
misc_feature 63262..63864
/locus_tag="O3Y_00295"
/note="thiazole biosynthesis adenylyltransferase ThiF, E.
coli subfamily; Region: adenyl_thiF; TIGR02356"
/db_xref="CDD:162820"
misc_feature order(63343..63345,63349..63351,63355..63357,63415..63417,
63421..63423,63448..63450,63487..63489,63613..63615,
63631..63633)
/locus_tag="O3Y_00295"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238386"
misc_feature order(63355..63357,63616..63624,63634..63636,63688..63693,
63703..63705,63709..63711,63895..63897,63907..63909,
63928..63930,63934..63939)
/locus_tag="O3Y_00295"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:238386"
gene 64014..64214
/locus_tag="O3Y_00300"
/db_xref="GeneID:11913001"
CDS 64014..64214
/locus_tag="O3Y_00300"
/note="COG2104 Sulfur transfer protein involved in
thiamine biosynthesis"
/codon_start=1
/transl_table=11
/product="sulfur carrier protein ThiS"
/protein_id="YP_005331937.1"
/db_xref="GI:379739968"
/db_xref="GeneID:11913001"
/translation="MTIYLNQQAIQTDISSSLFHLHAQLSLPSQGCVFSLNGQVVPRS
EWQHTKLNSGDEISLFQAIAGG"
misc_feature 64017..64211
/locus_tag="O3Y_00300"
/note="ThiaminS ubiquitin-like sulfur carrier protein;
Region: ThiS; cd00565"
/db_xref="CDD:176353"
misc_feature order(64131..64133,64185..64193)
/locus_tag="O3Y_00300"
/note="thiS-thiF/thiG interaction site; other site"
/db_xref="CDD:176353"
gene 64220..64990
/gene="thiG"
/locus_tag="O3Y_00305"
/db_xref="GeneID:11913002"
CDS 64220..64990
/gene="thiG"
/locus_tag="O3Y_00305"
/note="COG2022 Uncharacterized enzyme of thiazole
biosynthesis"
/codon_start=1
/transl_table=11
/product="thiazole synthase"
/protein_id="YP_005331938.1"
/db_xref="GI:379739969"
/db_xref="GeneID:11913002"
/translation="MLKIADKTFQSRLFTGTGKFSNRHVMAEALAASGSELVTMALKR
IDLAQRDDDILAPLLSMQMNLLPNTSGAKNAADAVYAAELAREALATNWLKLEIHPDP
KYLMPDPIETLLAAEQLVKQGFIVLPYCHADPVLCKRLEEVGCAAVMPLGSPIGSNQG
LASKTFLEIIIDQAKVPVIVDAGIGSPSDAAQAMELGADAVLVNTAIAAAHDPIAMAK
AFKLAVEAGRMAYESGLPSRVKMATASSPLTGFLDFVS"
misc_feature 64223..64963
/gene="thiG"
/locus_tag="O3Y_00305"
/note="Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous cofactor
that plays an important role in carbohydrate and amino
acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728"
/db_xref="CDD:240079"
misc_feature order(64340..64342,64376..64378,64385..64387)
/gene="thiG"
/locus_tag="O3Y_00305"
/note="ThiS interaction site; other site"
/db_xref="CDD:240079"
misc_feature order(64502..64504,64508..64510,64760..64762)
/gene="thiG"
/locus_tag="O3Y_00305"
/note="putative active site [active]"
/db_xref="CDD:240079"
misc_feature order(64517..64519,64526..64528,64535..64543,64610..64612,
64616..64624,64631..64636,64688..64696,64703..64705,
64721..64723,64733..64735,64775..64783,64793..64795,
64802..64807,64832..64834,64847..64855,64862..64867,
64874..64876,64895..64897,64904..64909,64913..64927,
64931..64936,64940..64942,64946..64954,64958..64960)
/gene="thiG"
/locus_tag="O3Y_00305"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:240079"
gene 64987..66099
/gene="thiH"
/locus_tag="O3Y_00310"
/db_xref="GeneID:11913003"
CDS 64987..66099
/gene="thiH"
/locus_tag="O3Y_00310"
/note="COG1060 Thiamine biosynthesis enzyme ThiH and
related uncharacterized enzymes"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiH"
/protein_id="YP_005331939.1"
/db_xref="GI:379739970"
/db_xref="GeneID:11913003"
/translation="MSFITHFQQLGWDDSRLSIYGKTARDVERALSSPKRTLDDFKAL
ISPSAEPYLETMAQMAYQATRQRFGNTMSMYIPLYLSNLCSNSCTYCGFSMDNRIKRK
TLNEVEIEREIAAIKRMGFDSVLLVTGEHETKVGIEYFRRALPIIKQAFHYVAMEVQP
LQQEEYAELIGLGLDAVMVYQETYHPSTYAQHHLRGKKTDFWYRLETPDRLARAGIDK
IGIGALIGLEDWRTDSIFVAAHLDYLERQYWKTRYSISFPRLRPCEGALQPKSVMTDR
QLVQLICAFRLFNSEVELSLSTRESPMFRDQVAKLGITSMSAASKTQPGGYSDPKVEL
EQFAVSDERSAAEVSSALMEQGLQVVWHDWHRAYSG"
misc_feature 64987..66096
/gene="thiH"
/locus_tag="O3Y_00310"
/note="thiamine biosynthesis protein ThiH; Reviewed;
Region: thiH; PRK09240"
/db_xref="CDD:236425"
misc_feature 65218..65796
/gene="thiH"
/locus_tag="O3Y_00310"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(65236..65238,65242..65244,65248..65250,65254..65262,
65365..65367,65371..65376,65455..65463,65524..65526,
65656..65658,65761..65766)
/gene="thiH"
/locus_tag="O3Y_00310"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 65746..66063
/gene="thiH"
/locus_tag="O3Y_00310"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; pfam06968"
/db_xref="CDD:219245"
gene complement(66324..68117)
/locus_tag="O3Y_00315"
/db_xref="GeneID:11913004"
CDS complement(66324..68117)
/locus_tag="O3Y_00315"
/note="COG0006 Xaa-Pro aminopeptidase"
/codon_start=1
/transl_table=11
/product="aminopeptidase P"
/protein_id="YP_005331940.1"
/db_xref="GI:379739971"
/db_xref="GeneID:11913004"
/translation="MSNLHSQRLADFRHWLHTQQLDAFIVPHEDEYLGEYVPEHNERL
HWLTGFTGSAGAAIVTLSGAAIFVDGRYTVQVRKQVSSELFEYCHLIEQPYLNWLVTQ
LPAGAKVGYDPRMHRGSWLTQAQKQLAGKINLCAVSSNPIDLLWQDRPVPAASEMRLI
PLDRVGQSSLEKRQSIASTLRDKNADCVVLTELDSIAWLLNIRGLDVSRLPVLLSHAI
VHNDSSVDFFFDPARLATDFDAHVAGTVRVHHPDQLEAQLHQLSGRRVMLDSATSNAW
FTLTLQNAGAELLNEADPCLLPKAAKNNTEIAGMRACHIRDGAAMVQFLAWLDNEVAN
GRLHNEAELADRLEAFRRQDPTLVDLSFDTISAAGTNAAMCHYNHQNQPEPGQLSMDS
LYLVDSGGQYLDGTTDITRTVAIGQVSAEMKQQFTLVLKGHIALARARFPKGTTGSQL
DVLARQHLWAQGYDYDHGTGHGVGHFLSVHEGPQRIAKVHNSVALRPGMVLSNEPGYY
RADAFGIRIENLELVTEFATQGDFSVLGFESLTRCPIDKRAIEVNLLTKPELHWLNQY
HQKVWDEVSPLIKEAHVREWLQQATSPLSHV"
misc_feature complement(67728..68096)
/locus_tag="O3Y_00315"
/note="Creatinase/Prolidase N-terminal domain; Region:
Creatinase_N; pfam01321"
/db_xref="CDD:216431"
misc_feature complement(66465..67607)
/locus_tag="O3Y_00315"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:223085"
misc_feature complement(66522..67193)
/locus_tag="O3Y_00315"
/note="X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also
known as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid, including
proline, that is linked with proline; Region: APP;
cd01085"
/db_xref="CDD:238518"
misc_feature complement(order(66564..66566,66606..66608,66693..66695,
66894..66896,66927..66929,66990..66992))
/locus_tag="O3Y_00315"
/note="active site"
/db_xref="CDD:238518"
gene complement(68250..69191)
/locus_tag="O3Y_00320"
/db_xref="GeneID:11913005"
CDS complement(68250..69191)
/locus_tag="O3Y_00320"
/note="COG0583 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_005331941.1"
/db_xref="GI:379739972"
/db_xref="GeneID:11913005"
/translation="MQIEKLARIDLNLLVCLKVLIEELSVTRAAARLCLSQSAVSKSL
AKLREQFDDPLFVRTSYGLNATPKALFLKPKLDVLVNQLELLTQPAHFSPQSSEYRFQ
IAAVESVYPLIMPYFLPTIFRHGPHLSISTHAWTEQTFRKLQVGELDFGLTGKDIDIN
DAKLTLLPPADICEQEIYRDNQRCVVRRGHPVLQYDWNLSSYLNLRHVQVRCDGNDRW
LLDYRLADLGYERDIAITVPDFNSAASLCTYTDFIFTAPSHFTHWVAKQMDLVELPLP
MEFPPMAYTLFWHRERENDPALRWLRELIQTNTLHLR"
misc_feature complement(68271..69176)
/locus_tag="O3Y_00320"
/note="DNA-binding transcriptional regulator YidZ;
Provisional; Region: PRK10216"
/db_xref="CDD:182312"
misc_feature complement(68985..69161)
/locus_tag="O3Y_00320"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(68274..68894)
/locus_tag="O3Y_00320"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulators that involved in the
catabolism of nitroaromatic/naphthalene compounds and that
of related regulators; contains the type 2 periplasmic
binding fold; Region: PBP2_Nitroaromatics_like; cd08417"
/db_xref="CDD:176109"
misc_feature complement(order(68340..68342,68541..68543,68652..68654,
68853..68855,68865..68870,68874..68876))
/locus_tag="O3Y_00320"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:176109"
misc_feature complement(order(68445..68447,68454..68459,68466..68471,
68478..68492,68574..68576,68790..68792,68796..68810,
68814..68819,68826..68831,68835..68840,68847..68852,
68859..68864,68871..68873))
/locus_tag="O3Y_00320"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176109"
gene 69308..70498
/locus_tag="O3Y_00325"
/db_xref="GeneID:11913006"
CDS 69308..70498
/locus_tag="O3Y_00325"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein"
/protein_id="YP_005331942.1"
/db_xref="GI:379739973"
/db_xref="GeneID:11913006"
/translation="MPSQVSKQQMVLLTLLVLFSPLAIDIYLPALPQISQAFHVEHAL
AQDTITWFLFAMGVGQLFAGPLADKYGRRTVALGGISIYALSALLAWSAQSIEWMLMA
RLLQGLGACATSVAAFATVRDLFGPQRSGKMISYLNGAICFIPALAPILGSWLTQQFG
WRANFSFMTGFALLVGLAMALRLQESNPYMGSRPAVFKLSRYAAVLKAPTFLFHASLC
LLAMAVILAYVTSAPVILMERLQLSMNEFTFWFGVNAVINIIACMTAPKVMDKLGTRW
SLIIGITTLMIAGSLMLVLRNQASALAFMLPVFLSSIGFAWILGAAAGKALAPFGDKA
GTAAALLGLFQMSGSGLLVGTLQRIMPEPQLLIGLTMWLAAPALLILFSPLGFRWHAS
VSEC"
misc_feature 69362..70462
/locus_tag="O3Y_00325"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 69365..70456
/locus_tag="O3Y_00325"
/note="drug resistance transporter, Bcr/CflA subfamily;
Region: efflux_Bcr_CflA; TIGR00710"
/db_xref="CDD:233099"
misc_feature order(69377..69379,69386..69394,69398..69403,69452..69454,
69461..69466,69473..69475,69485..69490,69494..69499,
69635..69640,69647..69652,69659..69664,69671..69673,
69707..69712,69719..69724,69740..69742,69971..69973,
69980..69985,69992..69997,70004..70006,70046..70048,
70058..70060,70070..70072,70079..70081,70091..70093,
70235..70237,70244..70249,70256..70258,70268..70273,
70280..70282,70316..70321,70328..70333,70340..70345,
70352..70354)
/locus_tag="O3Y_00325"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 70602..70886
/locus_tag="O3Y_00330"
/db_xref="GeneID:11913007"
CDS 70602..70886
/locus_tag="O3Y_00330"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331943.1"
/db_xref="GI:379739974"
/db_xref="GeneID:11913007"
/translation="MSLTTYEMARILEQLDESPEKVMYGKLLNELGNQSSERIRSAAK
QVPLTVLRDLVYQFQQVIESRKGEQVETMAKELAKQGISAEELLNYLQKR"
gene complement(70975..71436)
/locus_tag="O3Y_00335"
/db_xref="GeneID:11913008"
CDS complement(70975..71436)
/locus_tag="O3Y_00335"
/note="COG1522 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator AsnC"
/protein_id="YP_005331944.1"
/db_xref="GI:379739975"
/db_xref="GeneID:11913008"
/translation="MQTTTKLDELDRAILKILMDDARTPYAEMAKQFNVSPATIHVRI
EKMKAADIIQGTEVVVNTKKLGYDVCCFIGINLNAARDYHSALAKLNALDEVVEAYYT
TGAYNIFVKLMCRSIEELQHVLIDKLQAIDEVQSTETLISLQNPISRNVNP"
misc_feature complement(70978..71436)
/locus_tag="O3Y_00335"
/note="DNA-binding transcriptional regulator AsnC;
Provisional; Region: PRK11179"
/db_xref="CDD:183019"
misc_feature complement(<71275..71415)
/locus_tag="O3Y_00335"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature complement(order(71290..71295,71299..71304,71311..71316,
71320..71331,71356..71358,71362..71367,71404..71412))
/locus_tag="O3Y_00335"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature complement(order(71353..71355,71365..71367))
/locus_tag="O3Y_00335"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
misc_feature complement(71005..71220)
/locus_tag="O3Y_00335"
/note="AsnC family; Region: AsnC_trans_reg; pfam01037"
/db_xref="CDD:216258"
gene 71524..73818
/locus_tag="O3Y_00340"
/db_xref="GeneID:11913009"
CDS 71524..73818
/locus_tag="O3Y_00340"
/note="COG2199 FOG: GGDEF domain"
/codon_start=1
/transl_table=11
/product="sensory box/GGDEF family protein"
/protein_id="YP_005331945.1"
/db_xref="GI:379739976"
/db_xref="GeneID:11913009"
/translation="MSRLRHWYNKYALPLAVGLGCFWTANLVAQEPTLSSQPLDNLGT
SRVPWDSELAANAMLWIVALVAIMVLSILTVRQYHYIQRLRTNQKLLESIFDQSTHYI
GIFDLEGRIISCNGKLQGLLYRHGESLLRPIWQHKGWEDSAVEHIQNYFSESVPQTRQ
FNAEIWHPELGAIVLECQFKPLPTREESQILLEAQDITWRKITEDKLFQREASLRHYY
DQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGHHIRDFYQDEEVLTPRQMLLLP
SRHASSVWRREVCYRHHSGETVWVRENIRPLVETGTLLIVGEDITETRQLADQLAYQA
RYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLYLDLDQLKVLNDTAGHDAGDGAI
QFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSIIHALSEVAFVWEHI
RFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYRQDDEDLRRRQLE
MESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEYVSPGIFVPAS
ERYNLAHRLDRKIVEQTFNWLEARPQVLDKLGRVSINLSGNSIGNPDFVAFLLERLRD
SRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFGYLQKLPV
DIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQIGVDY
AQGYLFSRPQPIADWVAEQLKEKA"
misc_feature 72151..72513
/locus_tag="O3Y_00340"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:232884"
misc_feature 72187..72483
/locus_tag="O3Y_00340"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature order(72232..72234,72244..72246,72262..72264,72301..72312,
72391..72393,72406..72408)
/locus_tag="O3Y_00340"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(72292..72294,72304..72306,72328..72330,72337..72339,
72343..72345,72427..72429,72433..72435)
/locus_tag="O3Y_00340"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature 72475..73008
/locus_tag="O3Y_00340"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:225109"
misc_feature 72526..72999
/locus_tag="O3Y_00340"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(72637..72639,72766..72768)
/locus_tag="O3Y_00340"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(72652..72654,72661..72666,72676..72678,72688..72690,
72754..72756,72760..72771)
/locus_tag="O3Y_00340"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(72742..72744,72826..72828)
/locus_tag="O3Y_00340"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 73060..73785
/locus_tag="O3Y_00340"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
gene 73881..74663
/locus_tag="O3Y_00345"
/db_xref="GeneID:11913010"
CDS 73881..74663
/locus_tag="O3Y_00345"
/note="COG0500 SAM-dependent methyltransferases"
/codon_start=1
/transl_table=11
/product="SAM-dependent methyltransferase"
/protein_id="YP_005331946.1"
/db_xref="GI:379739977"
/db_xref="GeneID:11913010"
/translation="MIQLICQAPQRAQELEQIAARWQLQASDDSPFALVLSEERLELR
KLDEPKLGAIYVDWVEGAVAHRRKFGGGKGQSIAKAAGLNKGVTPVVLDATAGLGRDA
FVLASLGCRVQMVERHPVVAALLEDGLQRAKQDDEIGAWVSERISLLHASSHDALQQL
ASDPNFTSPDVVYLDPMYPHPENKKKTALVKKEMRVFQSLVGADNDADALLEPALQLA
QKRVVVKRPDYAPWLGNRKPSMAMETKKNRFDVYVIAAMSGE"
misc_feature 74151..>74420
/locus_tag="O3Y_00345"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(74160..74180,74226..74231,74331..74339,74403..74405)
/locus_tag="O3Y_00345"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 74787..75170
/locus_tag="O3Y_00350"
/db_xref="GeneID:11913011"
CDS 74787..75170
/locus_tag="O3Y_00350"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331947.1"
/db_xref="GI:379739978"
/db_xref="GeneID:11913011"
/translation="MAKRLCKLSRHEIATSLSEIERLVAEPQFLCRACARVAGDKKSL
CKPQAMSLPAPVATVVALPAHESGVVSLLPKASLKKQRKFHKKLEKVLKKQRKLMKKQ
QLLEGKVGQRHPTPVVERATAQSMH"
gene complement(75266..76153)
/locus_tag="O3Y_00355"
/db_xref="GeneID:11913012"
CDS complement(75266..76153)
/locus_tag="O3Y_00355"
/note="COG0697 Permeases of the drug/metabolite
transporter (DMT) superfamily"
/codon_start=1
/transl_table=11
/product="MadN protein"
/protein_id="YP_005331948.1"
/db_xref="GI:379739979"
/db_xref="GeneID:11913012"
/translation="MVYLSAVTLLWAFSFSLIGVYLAGQVDSWFAVWMRVALASLVFI
PFLRFKGVPRALIAKLMAIGGVQLGLMYCFYYQSFLLLSVPEVLLFTVFTPIYVTLIY
DFLKGRFSPWYLVTAFIAVLGAVFIKFAGINEHFVTGFLVVQGANLCFAIGQVGYKYV
MEQESTELPQHTVFGYFYLGALLVASVAFLLLGNPEKLPTTSVQWSILVYLGLIASGL
GYFAWNKGACMVNAGALAIMNNALVPAGLVVNILIWNREVDLVRLSLGGAIILGSLWI
NETWVKRRVERDYQRQGLL"
misc_feature complement(75773..76129)
/locus_tag="O3Y_00355"
/note="EamA-like transporter family; Region: EamA;
cl17759"
/db_xref="CDD:248313"
misc_feature complement(75368..76123)
/locus_tag="O3Y_00355"
/note="Carboxylate/Amino Acid/Amine Transporter; Region:
2A78; TIGR00950"
/db_xref="CDD:233205"
gene complement(76210..76635)
/locus_tag="O3Y_00360"
/db_xref="GeneID:11913013"
CDS complement(76210..76635)
/locus_tag="O3Y_00360"
/note="COG0589 Universal stress protein UspA and related
nucleotide-binding proteins"
/codon_start=1
/transl_table=11
/product="universal stress protein A"
/protein_id="YP_005331949.1"
/db_xref="GI:379739980"
/db_xref="GeneID:11913013"
/translation="MSYQHLLVAVDLSEDSKLLVEKAVALAKPLNAEVSFIHIDVNYA
ELYTGLIDINLAETQHHAMEASQKQLQDLAQHANYPIKHTLVGSGDLTNELCETISEF
NVDLLVCGHHQDFWSKLLSSTRQLINSSPVDMLVIPLND"
misc_feature complement(76225..76623)
/locus_tag="O3Y_00360"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature complement(order(76267..76275,76300..76305,76306..76311,
76519..76521,76603..76611))
/locus_tag="O3Y_00360"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene 76800..77327
/locus_tag="O3Y_00365"
/db_xref="GeneID:11913014"
CDS 76800..77327
/locus_tag="O3Y_00365"
/note="COG1528 Ferritin-like protein"
/codon_start=1
/transl_table=11
/product="ferritin"
/protein_id="YP_005331950.1"
/db_xref="GI:379739981"
/db_xref="GeneID:11913014"
/translation="MLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDGAAEFLR
AHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQKITQQIN
KLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAA
LAKKGSSSVMDAPAE"
misc_feature 76806..77273
/locus_tag="O3Y_00365"
/note="nonheme-containing ferritins; Region:
Nonheme_Ferritin; cd01055"
/db_xref="CDD:153113"
misc_feature 76818..77231
/locus_tag="O3Y_00365"
/note="Ferritin-like domain; Region: Ferritin; pfam00210"
/db_xref="CDD:215791"
misc_feature order(76848..76850,76944..76949,76956..76958,77079..77081,
77175..77177,77184..77189)
/locus_tag="O3Y_00365"
/note="ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153113"
gene 77403..77726
/locus_tag="O3Y_00370"
/db_xref="GeneID:11913015"
CDS 77403..77726
/locus_tag="O3Y_00370"
/codon_start=1
/transl_table=11
/product="universal stress protein UspB"
/protein_id="YP_005331951.1"
/db_xref="GI:379739982"
/db_xref="GeneID:11913015"
/translation="MISGDTILFALMLVTAINVARYVTALRSLIYIMREAHPLLYQQV
DGRGFFTTHGNVTKQVRLYHYLKSREYHHHHDPVFTGKCDRVRELFILSGSLLVLTTV
VAFML"
misc_feature 77403..77723
/locus_tag="O3Y_00370"
/note="Universal stress protein B (UspB); Region: UspB;
pfam10625"
/db_xref="CDD:119145"
gene 77868..79055
/locus_tag="O3Y_00375"
/db_xref="GeneID:11913016"
CDS 77868..79055
/locus_tag="O3Y_00375"
/note="COG2081 Predicted flavoproteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331952.1"
/db_xref="GI:379739983"
/db_xref="GeneID:11913016"
/translation="MSKTVDVVIIGAGAAGLMCAAQAARRGRQVLLLDHAKKPGRKIL
ISGGGRCNFTNYDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQL
FCLDSAKEIVDMLLSECDQPNIEQRYQVEISAIAHTEQGFTLQTTIGEIECASLVVAT
GGLSMPKLGATPFGYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAPLSGVAIPVEMR
AECGKTFKEALLFTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHP
NQSLKNTLSKVLPKRLVEVLIERQLFADKPLKQYSPKELDAVQTRLEQWSIVPNGTEG
YRTAEVTLGGVDTDCLSSKTMECKTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAG
QWV"
misc_feature 77871..79052
/locus_tag="O3Y_00375"
/note="Predicted flavoproteins [General function
prediction only]; Region: COG2081"
/db_xref="CDD:224992"
gene complement(79052..79963)
/locus_tag="O3Y_00380"
/db_xref="GeneID:11913017"
CDS complement(79052..79963)
/locus_tag="O3Y_00380"
/note="COG0697 Permeases of the drug/metabolite
transporter (DMT) superfamily"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="YP_005331953.1"
/db_xref="GI:379739984"
/db_xref="GeneID:11913017"
/translation="MNEKRALSLGLASVLLWSTVATAFKLTLAELNPLQMVTVASIVS
ALALLVICAAMDKLKLIVPTLLANPFYYLLLGLINPLAYYLILFKAYSLLPASQAQAI
NYSWAITLTLMAALFLGQRIRKQDWIACAMSYLGVVVIATKGDLLGLQFESPLGVGLA
LLSTLLWAGYWILNTKNKADPIVGVLLGFLLAIPFALALCWHENLNWQGITTQGWLAV
TYVGLFEMGITFVLWLSALKNTQNTARISNLIFASPFISLFLLATIIGEAIHPTTLIG
LVLIIAGLVVQQWQGRKAQPSEAKLNP"
misc_feature complement(79145..79963)
/locus_tag="O3Y_00380"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
misc_feature complement(79538..79921)
/locus_tag="O3Y_00380"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
misc_feature complement(79145..79432)
/locus_tag="O3Y_00380"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
gene 80086..81618
/locus_tag="O3Y_00385"
/db_xref="GeneID:11913018"
CDS 80086..81618
/locus_tag="O3Y_00385"
/note="COG1322 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="DNA recombination protein RmuC"
/protein_id="YP_005331954.1"
/db_xref="GI:379739985"
/db_xref="GeneID:11913018"
/translation="MQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLEQQL
EQQSHWHAQQIQQLNEQLTTAQQELDELDALRDKNEFELKQSHGKLMAVLEKLRYFEA
VKQERQQYADELNQVRAAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLKQQF
EHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHE
LRNLQRLNEQMAKEAVNLTQALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSL
QNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAETDSERDSALREHLLALRN
HIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTT
LLVALRTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDKANQSYQG
AMNKLVTGRGNAIRQAESFKQLGVEIKRSIPQPLIERAQQAPDQENAPLVERHPIEDK
VN"
misc_feature 80257..81609
/locus_tag="O3Y_00385"
/note="Predicted nuclease of restriction endonuclease-like
fold, RmuC family [General function prediction only];
Region: COG1322"
/db_xref="CDD:224241"
misc_feature 80623..81534
/locus_tag="O3Y_00385"
/note="RmuC family; Region: RmuC; pfam02646"
/db_xref="CDD:217163"
gene 81663..82445
/gene="ubiE"
/locus_tag="O3Y_00390"
/db_xref="GeneID:11913019"
CDS 81663..82445
/gene="ubiE"
/locus_tag="O3Y_00390"
/EC_number="2.1.1.-"
/note="COG2226 Methylase involved in
ubiquinone/menaquinone biosynthesis"
/codon_start=1
/transl_table=11
/product="ubiquinone/menaquinone biosynthesis
methyltransferase"
/protein_id="YP_005331955.1"
/db_xref="GI:379739986"
/db_xref="GeneID:11913019"
/translation="MTDTNVLANSATDNQETTHFGFETVRKDEKVHKVAQVFHSVAAK
YDIMNDLMSGGIHRLWKRFTIDCSGARPGQRILDLGGGTGDLTAKFSRIVGEKGHVIL
ADINNSMLNVGRDKLRDSGVVGNVHYVQANAEELPFPDNYFDCITISFCLRNVTDKDK
ALRSMFRVLKPGGRLLVLEFSKPILEPLSKLYDTYSFHILPKMGQLIANDADSYRYLA
ESIRMHPDQETLKGMMEEAGFEQTTYYNLTGGIVALHRGYKF"
misc_feature 81726..82442
/gene="ubiE"
/locus_tag="O3Y_00390"
/note="Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
/db_xref="CDD:225136"
misc_feature 81945..82193
/gene="ubiE"
/locus_tag="O3Y_00390"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene 82472..83077
/locus_tag="O3Y_00395"
/db_xref="GeneID:11913020"
CDS 82472..83077
/locus_tag="O3Y_00395"
/note="COG3165 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331956.1"
/db_xref="GI:379739987"
/db_xref="GeneID:11913020"
/translation="MPLSPLLTAVIETTLNTLINDDPALGRKLLRLKGKVISLHLREL
NQSLTFVFSQRIDVMTGFEGQPDCYLALNLSILPQLREQANITQLIKQDKLELEGDIQ
LAQKFSELMTDCKPDVEEWLSRITGDVVAHSVVHGVKSIVGALKQQAHKHQNHLAQVL
TEEWRIAPPPLEIAYFCDQVDDVKSHAARLEARLNQLLEKA"
misc_feature 82472..83074
/locus_tag="O3Y_00395"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3165"
/db_xref="CDD:225706"
misc_feature 82514..82804
/locus_tag="O3Y_00395"
/note="SCP-2 sterol transfer family; Region: SCP2;
pfam02036"
/db_xref="CDD:216855"
gene 83074..84708
/gene="ubiB"
/locus_tag="O3Y_00400"
/db_xref="GeneID:11913021"
CDS 83074..84708
/gene="ubiB"
/locus_tag="O3Y_00400"
/note="COG0661 Predicted unusual protein kinase"
/codon_start=1
/transl_table=11
/product="ubiquinone biosynthesis protein UbiB"
/protein_id="YP_005331957.1"
/db_xref="GI:379739988"
/db_xref="GeneID:11913021"
/translation="MKPAELKRLYRIVKVQLEYGLDELLPEHHLTRAPLLARKSLFWL
RNQHADKALGDRLRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDG
LQAKQLIEEELGAPLETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRP
QIDADIKLMYRVARIVAKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRN
FENSEELYVPEVLTDFCNETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFT
QVFRDSFFHADMHPGNVFVNPNHPENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNR
DYRRVAQLHVDSGWVPLDTNVDEFEVAIRMVCEPIFAKPLCEISFGHVLLNLFNTARR
FNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPFLEKWMANQVGPQAFLHALK
ERAPLWFEKMPELPELLYDSLKQGRNLNQRLDNLYQGYRQSKRQQGTGKFLFGVGATL
VVCSAIWISNQLEPLAIGSATIGVLCWLLSWRAYRQ"
misc_feature 83080..84699
/gene="ubiB"
/locus_tag="O3Y_00400"
/note="putative ubiquinone biosynthesis protein UbiB;
Reviewed; Region: ubiB; PRK04750"
/db_xref="CDD:235310"
misc_feature 83089..84405
/gene="ubiB"
/locus_tag="O3Y_00400"
/note="2-polyprenylphenol 6-hydroxylase; Region: UbiB;
TIGR01982"
/db_xref="CDD:233667"
gene 84768..85016
/gene="tatA"
/locus_tag="O3Y_00405"
/db_xref="GeneID:11913022"
CDS 84768..85016
/gene="tatA"
/locus_tag="O3Y_00405"
/note="COG1826 Sec-independent protein secretion pathway
components"
/codon_start=1
/transl_table=11
/product="twin arginine translocase protein A"
/protein_id="YP_005331958.1"
/db_xref="GI:379739989"
/db_xref="GeneID:11913022"
/translation="MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMS
EEESNSAANQKDADFETKNLEQAKTNASAEVKKDKEQA"
misc_feature 84768..85013
/gene="tatA"
/locus_tag="O3Y_00405"
/note="twin arginine translocase protein A; Provisional;
Region: tatA; PRK04598"
/db_xref="CDD:179867"
gene 85020..85421
/locus_tag="O3Y_00410"
/db_xref="GeneID:11913023"
CDS 85020..85421
/locus_tag="O3Y_00410"
/note="COG1826 Sec-independent protein secretion pathway
components"
/codon_start=1
/transl_table=11
/product="sec-independent translocase"
/protein_id="YP_005331959.1"
/db_xref="GI:379739990"
/db_xref="GeneID:11913023"
/translation="MFDIGFWELVLIAIVALVVLGPERLPHAIRSVAKFVSAAKSMAN
SVKDELAHELKVQELQENLRKAEQMGMQNLSPELQKSVESLKQAAQEVQRPYAATPSS
EASSTSSNPSSATEPDVRLDSASQPAEKKAE"
misc_feature 85020..>85307
/locus_tag="O3Y_00410"
/note="sec-independent translocase; Provisional; Region:
PRK01770"
/db_xref="CDD:179334"
gene 85510..86262
/locus_tag="O3Y_00415"
/db_xref="GeneID:11913024"
CDS 85510..86262
/locus_tag="O3Y_00415"
/note="COG0805 Sec-independent protein secretion pathway
component TatC"
/codon_start=1
/transl_table=11
/product="sec-independent protein translocase protein
TatC"
/protein_id="YP_005331960.1"
/db_xref="GI:379739991"
/db_xref="GeneID:11913024"
/translation="MSSVEQTQPLISHLLELRNRLLKAVAAVVVIFIGLIYFSNEIYE
FVSKPLVERLPAGATMIATDVASPFFTPLKLTLIAAVFLAVPFILYQVWAFVAPGLYK
HERRLIFPLLVSSSLLFYCGVAFAYFVVFPLVFGFFTAISLGGVEFATDIASYLDFVL
ALFLAFGIAFEVPVAIILLCWTGATTPKSLSEKRPYIIVGAFVVGMLLTPPDMISQTL
LAIPMCLLFEVGLFFARFYTRDEADEGQEEEE"
misc_feature 85516..86223
/locus_tag="O3Y_00415"
/note="Sec-independent protein translocase protein (TatC);
Region: TatC; cl00521"
/db_xref="CDD:241922"
gene 86574..87575
/locus_tag="O3Y_00420"
/db_xref="GeneID:11913025"
CDS 86574..87575
/locus_tag="O3Y_00420"
/note="COG1858 Cytochrome c peroxidase"
/codon_start=1
/transl_table=11
/product="cytochrome c551 peroxidase"
/protein_id="YP_005331961.1"
/db_xref="GI:379739992"
/db_xref="GeneID:11913025"
/translation="MKVVLTSLSLAISLSLAGYAFAASPRNEPVSPILPAQEIHIGKA
ELGKKLYFDPRLSKSGFISCNSCHNLSMGGSDNLKTSIGHNWQQGPINSPTVLNSSLN
IAQFWDGRAADLKEQAGGPIANPGEMAFTHTLAIDVLQSIPAYVSEFRLVFGKPTLDI
DQVTEAIAEFEKTLVTPYSRFDQWLMGDDSAITAQELAGYELFKNSGCVACHNGSALG
GNSFQKMGLIEPYQTNNKVEGLSAVTGADADRFKFKVPTLRNVALTYPYFHDGEAATL
KDAVDIMGRLQLGRKFTDDENGKIVAFLHTLTGEQPSFALPILPPSNDNTPKPQPFD"
misc_feature 86700..87149
/locus_tag="O3Y_00420"
/note="Di-haem cytochrome c peroxidase; Region: CCP_MauG;
pfam03150"
/db_xref="CDD:217389"
misc_feature <87156..87494
/locus_tag="O3Y_00420"
/note="Predicted thiol oxidoreductase [Energy production
and conversion]; Region: COG3488"
/db_xref="CDD:226019"
gene complement(87681..89036)
/locus_tag="O3Y_00425"
/db_xref="GeneID:11913026"
CDS complement(87681..89036)
/locus_tag="O3Y_00425"
/note="COG0534 Na+-driven multidrug efflux pump"
/codon_start=1
/transl_table=11
/product="DNA-damage-inducible protein F"
/protein_id="YP_005331962.1"
/db_xref="GI:379739993"
/db_xref="GeneID:11913026"
/translation="MSLILQTLKQPNVHRQVLAIALPMVLSNITVPLLGLVDAAVIGH
LEHAWYLGGVALGSTMISVTFWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIA
LGLAALFLLFHRPVAELIFHFSDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLG
TQNARAPMWMVIITNLTNIVLDLLLVLGLGLKVEGAAIASVIADYAGLLFGLLCVGRY
WRQHQLPAPFSFIPSLTKELSRLVALNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAA
NAVLMSFLMMISYGMDGFAYAMEAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSL
IFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMPLIAVWCFLLDGVFIGATKGKEMRN
SMAVSAVAFFAIYGFMTHYGNHALWLAMLSFMALRGFTLGATFYTQWRAGTFLPARFS
I"
misc_feature complement(87726..88997)
/locus_tag="O3Y_00425"
/note="DinF and similar proteins, a subfamily of the
multidrug and toxic compound extrusion (MATE)-like
proteins; Region: MATE_DinF_like; cd13136"
/db_xref="CDD:240541"
misc_feature complement(87693..88979)
/locus_tag="O3Y_00425"
/note="DNA-damage-inducible SOS response protein;
Provisional; Region: PRK10367"
/db_xref="CDD:182413"
gene complement(89116..89928)
/locus_tag="O3Y_00430"
/db_xref="GeneID:11913027"
CDS complement(89116..89928)
/locus_tag="O3Y_00430"
/note="COG3315 O-Methyltransferase involved in polyketide
biosynthesis"
/codon_start=1
/transl_table=11
/product="O-methyltransferase-like protein"
/protein_id="YP_005331963.1"
/db_xref="GI:379739994"
/db_xref="GeneID:11913027"
/translation="MRHSDSPTSDSYQVPANLVQPLWLRSRESLVDNGLVYDPIAANA
CRRCALAQDCLTGDIAQKQLLHVTLTQLCDQQVRHFLDTHPDGWIINVGAGLDTRFYR
VDNGRCHWIEWDITENLLWREKLFHSSERYQLVCGDVMQPQGLAELPIPEFAPVLLVC
EHALLDCDAQQVARFVRSIGLHFAKASACLVVAGDKTSSYLGQKLGCEAYAHGFTCAG
DAIINCLPWAKSVRTFSPLDRHCDRWKFWQRAIARSGIYKTRLTPVVVNLDW"
misc_feature complement(89119..89892)
/locus_tag="O3Y_00430"
/note="O-Methyltransferase involved in polyketide
biosynthesis [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: COG3315"
/db_xref="CDD:225852"
misc_feature complement(89389..89877)
/locus_tag="O3Y_00430"
/note="Leucine carboxyl methyltransferase; Region: LCM;
pfam04072"
/db_xref="CDD:217872"
gene complement(90013..90642)
/locus_tag="O3Y_00435"
/db_xref="GeneID:11913028"
CDS complement(90013..90642)
/locus_tag="O3Y_00435"
/EC_number="3.4.21.88"
/note="COG1974 SOS-response transcriptional repressors
(RecA-mediated autopeptidases)"
/codon_start=1
/transl_table=11
/product="LexA repressor"
/protein_id="YP_005331964.1"
/db_xref="GI:379739995"
/db_xref="GeneID:11913028"
/translation="MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGFRSANAAE
EHLKALARKQVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPILAQEHVE
AHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVARVEDDV
TVKRLERKGSKVFLHAENEEFAPIEVDLAAQSLTIEGIAVGVIRNSTWM"
misc_feature complement(90028..90636)
/locus_tag="O3Y_00435"
/note="LexA repressor; Validated; Region: PRK00215"
/db_xref="CDD:234688"
misc_feature complement(90448..90636)
/locus_tag="O3Y_00435"
/note="LexA DNA binding domain; Region: LexA_DNA_bind;
pfam01726"
/db_xref="CDD:201938"
misc_feature complement(90043..90291)
/locus_tag="O3Y_00435"
/note="Peptidase S24 LexA-like proteins are involved in
the SOS response leading to the repair of single-stranded
DNA within the bacterial cell. This family includes: the
lambda repressor CI/C2 family and related bacterial
prophage repressor proteins; LexA (EC...; Region:
S24_LexA-like; cd06529"
/db_xref="CDD:119397"
misc_feature complement(order(90154..90156,90265..90267))
/locus_tag="O3Y_00435"
/note="Catalytic site [active]"
/db_xref="CDD:119397"
gene 90962..93388
/locus_tag="O3Y_00440"
/db_xref="GeneID:11913029"
CDS 90962..93388
/locus_tag="O3Y_00440"
/EC_number="2.3.1.15"
/note="COG2937 Glycerol-3-phosphate O-acyltransferase"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate acyltransferase"
/protein_id="YP_005331965.1"
/db_xref="GI:379739996"
/db_xref="GeneID:11913029"
/translation="MSSGHLLSRSLLKLPMSVLVKGTAIPSNPIQDLDIDTHKPVIYA
LPFRSNVDLLTLQTHAKEAGLPDPLEPLMLNGKAFQRYVFIASRPTLLSSDQHVPSDS
IALFSELLTEHKLDSELDVQVIPATVLWGRKPGKEGQERPYLQALNGPEKALAVLASG
RDCLVRFSPVVSMRYMADTHGTDASIAHKLARVARIHFSRQKLAASGPNLPQRAQLFA
RLMNSPAIEKAIADEAKSKQIPLEKARKEAHDILDEIAADFSYSLVKKGDRILGWLWN
RIYQGLNINNAATVRRLAQDGHEIVYVPCHRSHMDYLLLSYVLYHEGMVPPHIAAGIN
LNFFPAGPIFRRGGAFFIRRSFKGAPLYSTIFREYLAELFAKGYSVEYFSEGGRSRTG
RLLPAKTGMLAMTIQAMLRGLNRPVTLVPVYIGYEHVMEVGTYAKELRGKRKEKENAG
LVLRTLRKLRNFGQGYVNFGEPIPLNQFLNETVPQWTQDIDPMGESKPQWMTPTVNKL
ANRMMTHINDAAAVNAMTLCATALLASRQRALARDNLIKQVDCYLSLLRNVPYSATST
LPSESAEKLVEHAESLDKFVVETDTMGDIISLDRNQSILMTYYRNNIIHLLALPSLIA
QLLIRQQSVSLEKVQATVAQIYPFLKQELFLRFEAEELNDLVLRYVAELARQGLVTVE
GKTVTLNQAQTQVLMLLGRIISETLQRYAIALNLLVSCPHLGKAELEEKSQEVAQRLG
RLHGINAPEFFDKGVFASLFVTLQEQGYLDDQGRCVLETAKPLSRQLYALIYPEVRMT
IQESLCQVDA"
misc_feature 90992..93358
/locus_tag="O3Y_00440"
/note="glycerol-3-phosphate O-acyltransferase; Region:
plsB; TIGR03703"
/db_xref="CDD:234317"
misc_feature 91796..92401
/locus_tag="O3Y_00440"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: GPAT-like; Region:
LPLAT_DHAPAT-like; cd07993"
/db_xref="CDD:153255"
misc_feature order(91877..91879,91886..91888,91892..91894,91955..91966,
92117..92125)
/locus_tag="O3Y_00440"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153255"
gene complement(93464..94318)
/gene="ubiA"
/locus_tag="O3Y_00445"
/db_xref="GeneID:11913030"
CDS complement(93464..94318)
/gene="ubiA"
/locus_tag="O3Y_00445"
/note="COG0382 4-hydroxybenzoate polyprenyltransferase and
related prenyltransferases"
/codon_start=1
/transl_table=11
/product="4-hydroxybenzoate octaprenyltransferase"
/protein_id="YP_005331966.1"
/db_xref="GI:379739997"
/db_xref="GeneID:11913030"
/translation="MTAVKARAYWQLMRMDRPIGSLLLLWPTLWALLLAAQGLPDLRV
LVVFVLGVFLMRSAGCVINDYADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVS
SFLLVLTMNTLTIQLSFIGILLAFVYPFMKRFTHLPQLVLGLAFSWSIPMAWAAQANT
LTPQVWVLFLINALWTIAYDTQYAMVDRDDDVKIGIKSTAILFGRWDKRIIGLLQLAT
LSLLVALGQGLALGTSYYWGLLIAAGLFAYQQHLIRYRERMPCFQAFLNNNYVGMAIT
AGILLSVW"
misc_feature complement(93473..94306)
/gene="ubiA"
/locus_tag="O3Y_00445"
/note="4-hydroxybenzoate octaprenyltransferase; Reviewed;
Region: ubiA; PRK12848"
/db_xref="CDD:237229"
misc_feature complement(<93704..94156)
/gene="ubiA"
/locus_tag="O3Y_00445"
/note="UbiA prenyltransferase family; Region: UbiA;
pfam01040"
/db_xref="CDD:216260"
gene complement(94319..94870)
/locus_tag="O3Y_00450"
/db_xref="GeneID:11913031"
CDS complement(94319..94870)
/locus_tag="O3Y_00450"
/note="COG3161 4-hydroxybenzoate synthetase (chorismate
lyase)"
/codon_start=1
/transl_table=11
/product="chorismate--pyruvate lyase"
/protein_id="YP_005331967.1"
/db_xref="GI:379739998"
/db_xref="GeneID:11913031"
/translation="MNNSMNQLTSLYLAALNRVTWQQPDDIEFPAPLAQQWLLEQGSL
SRRMATQCEHLTVDLLSNQIMLADTLSYDETQLLASEEYLLRQVIIYGDQQPWVFGHT
LIPRSSMHNQPFDFTQQGKIPLGLTVFSADNVKRDALQVGWVETELGRLLARRSRLWM
NNKPMLVTELFLATSPIYSKERV"
misc_feature complement(94322..94828)
/locus_tag="O3Y_00450"
/note="Chorismate lyase; Region: Chor_lyase; pfam04345"
/db_xref="CDD:113128"
gene 95062..95472
/locus_tag="O3Y_00455"
/db_xref="GeneID:11913032"
CDS 95062..95472
/locus_tag="O3Y_00455"
/note="COG1580 Flagellar basal body-associated protein"
/codon_start=1
/transl_table=11
/product="flagellar basal body-associated protein
FliL-like protein"
/protein_id="YP_005331968.1"
/db_xref="GI:379739999"
/db_xref="GeneID:11913032"
/translation="MLKRYVVQIMLALSFIVPFHSHAEEKSAVPQLAYFTLEPDLTTN
FFTKGNKLGYIQVRIDIMVANAADLPVVEQHQPLIRDAVVELLGKQTEDTIKSLAGRE
DLRKSLVNRLNNILLPEVGRTVIADLLFTKYIYQ"
misc_feature 95065..95469
/locus_tag="O3Y_00455"
/note="flagellar basal body-associated protein FliL-like
protein; Validated; Region: PRK05697"
/db_xref="CDD:235565"
gene complement(95592..97571)
/locus_tag="O3Y_00460"
/db_xref="GeneID:11913033"
CDS complement(95592..97571)
/locus_tag="O3Y_00460"
/note="COG2202 FOG: PAS/PAC domain"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_005331969.1"
/db_xref="GI:379740000"
/db_xref="GeneID:11913033"
/translation="MGLLARLFSTAPHHPTQPAEVKPDPLMQSPVTTETTALQPEPQV
APYQTDLALTTPESDLTPQVNQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSA
EAMVGADFANLWRTHQQPSVQRLLQDAKKGHPVSAELQLSRSQEAIWIKADLYPIKAI
NGQLQNVVVLLQDITAAKLEKIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVG
YQLDEIQGRHHSMFVDEQYKQSQEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASY
NPIMDSEGKPYKVVKYATNVTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELG
EVISQFIVTLRQIITDINSVAATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEE
LNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTMASINESAQKIADIIGVID
GIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSANAAKDIKALISDSVSK
ISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQATGINEVNQAVNQMDEMTQ
QNAALVEEAAAASESLLAQAEQLYDHVAMFRLPDQDTSAPSLLKAVNKRPQSAPVTRH
PASHIAKTPAKITAKASSRAQPVMQVAHDEEWESF"
misc_feature complement(97044..97340)
/locus_tag="O3Y_00460"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:222120"
misc_feature complement(97050..97325)
/locus_tag="O3Y_00460"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature complement(order(97137..97139,97149..97151,97224..97235,
97272..97274,97290..97292,97302..97304))
/locus_tag="O3Y_00460"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature complement(order(97110..97112,97116..97118,97194..97199,
97206..97208,97230..97232,97242..97244))
/locus_tag="O3Y_00460"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature complement(96702..96995)
/locus_tag="O3Y_00460"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature complement(96678..96983)
/locus_tag="O3Y_00460"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:222120"
misc_feature complement(order(96771..96773,96783..96785,96867..96878,
96915..96917,96933..96935,96945..96947))
/locus_tag="O3Y_00460"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature complement(order(96744..96746,96750..96752,96831..96836,
96843..96845,96873..96875,96885..96887))
/locus_tag="O3Y_00460"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature complement(96525..96665)
/locus_tag="O3Y_00460"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:242275"
misc_feature complement(95883..96443)
/locus_tag="O3Y_00460"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(95889..95894,95898..95903,95910..95915,
95919..95924,95931..95933,95940..95945,95952..95954,
95961..95966,95973..95978,95982..95987,95994..95996,
96003..96008,96015..96017,96024..96029,96066..96071,
96078..96083,96087..96092,96099..96104,96111..96113,
96120..96125,96132..96134,96141..96143,96153..96155,
96174..96176,96183..96185,96195..96197,96204..96209,
96216..96218,96225..96227,96234..96239,96246..96251,
96258..96260,96267..96272,96276..96278,96288..96293,
96297..96302,96309..96311,96318..96323,96330..96335,
96342..96344,96351..96356,96363..96365,96372..96377,
96381..96386,96393..96395,96402..96407,96414..96419))
/locus_tag="O3Y_00460"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(96108..96209)
/locus_tag="O3Y_00460"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(97946..98779)
/locus_tag="O3Y_00465"
/db_xref="GeneID:11913034"
CDS complement(97946..98779)
/locus_tag="O3Y_00465"
/note="COG0705 Uncharacterized membrane protein (homolog
of Drosophila rhomboid)"
/codon_start=1
/transl_table=11
/product="GlpG protein"
/protein_id="YP_005331970.1"
/db_xref="GI:379740001"
/db_xref="GeneID:11913034"
/translation="MHLLTTFNNPRAAQAFIDYMAAHHIEIQMMPDAGGQFTLWVIQD
QHIETAQAELALFLENPYAEKYQAASWEVADQKRPQFHYASPNLLSLIKAKAGVFTLF
IMALCIIIFTLQTFGAGDEVFNALHFPALAGQQWQIWRWVSHALLHFSVMHIAFNLLW
WWQFGGDLEQRLGSVRLIKLFVVSAIISGAGQYWVEGANFGGLSGVVYALAGYLWILG
QRAPQLGLSIPRSLMGFMLIWLVLGYVQPFMAIANTAHLAGLISGVVLAWFDSQRDQQ
A"
misc_feature complement(98474..98779)
/locus_tag="O3Y_00465"
/note="Protein of unknown function (DUF3582); Region:
DUF3582; pfam12122"
/db_xref="CDD:221430"
misc_feature complement(97961..98773)
/locus_tag="O3Y_00465"
/note="rhomboid family protease GlpG; Region: rhombo_GlpG;
TIGR04239"
/db_xref="CDD:234518"
misc_feature complement(97949..98497)
/locus_tag="O3Y_00465"
/note="Membrane associated serine protease [Amino acid
transport and metabolism]; Region: COG0705"
/db_xref="CDD:223777"
gene complement(98786..99106)
/gene="glpE"
/locus_tag="O3Y_00470"
/db_xref="GeneID:11913035"
CDS complement(98786..99106)
/gene="glpE"
/locus_tag="O3Y_00470"
/EC_number="2.8.1.1"
/note="COG0607 Rhodanese-related sulfurtransferase"
/codon_start=1
/transl_table=11
/product="thiosulfate sulfurtransferase"
/protein_id="YP_005331971.1"
/db_xref="GI:379740002"
/db_xref="GeneID:11913035"
/translation="MDHFLHIDVNAAQAMMEQKQAHLVDIRDPQSFQLAHAKNAYHLT
NQSMVQFMEQAEFDQPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRANLP
IEAS"
misc_feature complement(98813..99091)
/gene="glpE"
/locus_tag="O3Y_00470"
/note="GlpE sulfurtransferase (ST) and homologs are
members of the Rhodanese Homology Domain superfamily.
Unlike other rhodanese sulfurtransferases, GlpE is a
single domain protein but indications are that it
functions as a dimer. The active site contains a...;
Region: GlpE_ST; cd01444"
/db_xref="CDD:238721"
misc_feature complement(98912..98914)
/gene="glpE"
/locus_tag="O3Y_00470"
/note="active site residue [active]"
/db_xref="CDD:238721"
gene complement(99867..100634)
/locus_tag="O3Y_00475"
/db_xref="GeneID:11913036"
CDS complement(99867..100634)
/locus_tag="O3Y_00475"
/note="COG0084 Mg-dependent DNase"
/codon_start=1
/transl_table=11
/product="TatD DNase family protein"
/protein_id="YP_005331972.1"
/db_xref="GI:379740003"
/db_xref="GeneID:11913036"
/translation="MIDTHAHVYASEFDHDRDEVIARARQVGIEKILMPNIDLNSIAP
MLATEKAYPDLCHSMMGLHPCYVDANVKQTLATIYEWFSRHTFIAVGEIGIDLYWDKT
FKAEQEMAFLTQLNWAKELDLPVVIHTRDSLNETLALLKQAQDGRLRGVFHCFGGSVD
EAKAINDLGFHLGIGGVSTFKNSGMDQVIPQLDLNYVILETDCPYLAPVPHRGKRNEP
MLTHLISEKVAQLRSLPLGEVIKITNNNSKALFGLDK"
misc_feature complement(99879..100634)
/locus_tag="O3Y_00475"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:238635"
misc_feature complement(order(100029..100031,100176..100178,
100251..100253,100614..100616,100620..100622))
/locus_tag="O3Y_00475"
/note="active site"
/db_xref="CDD:238635"
gene 100811..101854
/locus_tag="O3Y_00480"
/db_xref="GeneID:11913037"
CDS 100811..101854
/locus_tag="O3Y_00480"
/EC_number="4.2.1.24"
/note="COG0113 Delta-aminolevulinic acid dehydratase"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_005331973.1"
/db_xref="GI:379740004"
/db_xref="GeneID:11913037"
/translation="MSVSIQGQFPGRRLRRLRKHDFSRRLVAENQLSVNDLIYPMFIL
MGKDRREKVDSMPGVERLSIDLMLEEAQYLANLGVPAIALFPVVNQDAKSLCAAEAYN
PEGLVQRAVRALKEHVPQMGVITDVALDPFTTHGQDGIIDEQGYVLNDETTEVLVKQA
LSHAQAGADVVAPSDMMDGRIGRIRQALEEAGYIHTQIMAYSAKYASNYYGPFRDAVG
SSANLKGGNKKNYQMDPANSDEALHEVAMDINEGADMVMVKPGMPYLDVVRRVKTELQ
VPTFAYQVSGEYAMHKAAIMNGWLKERETVFESLLCFKRAGADGILTYFAKEVAEWLA
EDSAKAAQFLPKK"
misc_feature 100844..101812
/locus_tag="O3Y_00480"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region:
ALAD_PBGS_aspartate_rich; cd04823"
/db_xref="CDD:240127"
misc_feature order(100847..100855,100862..100867,100892..100900,
100970..100972,100979..100981,101255..101260,
101339..101344,101429..101437,101498..101503,
101510..101521,101528..101530,101537..101542,
101594..101608,101678..101680,101723..101725,
101732..101734,101744..101746,101753..101755)
/locus_tag="O3Y_00480"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240127"
misc_feature order(100847..100849,101342..101344,101540..101542,
101552..101554)
/locus_tag="O3Y_00480"
/note="allosteric magnesium binding site [ion binding];
other site"
/db_xref="CDD:240127"
misc_feature order(101186..101188,101192..101194,101198..101200,
101222..101224,101330..101332,101420..101422,
101438..101440,101447..101452,101465..101467,
101492..101494,101504..101506,101585..101587,
101654..101656,101663..101665,101780..101782)
/locus_tag="O3Y_00480"
/note="active site"
/db_xref="CDD:240127"
misc_feature order(101198..101200,101222..101224,101333..101335)
/locus_tag="O3Y_00480"
/note="aspartate-rich active site metal binding site;
other site"
/db_xref="CDD:240127"
misc_feature order(101420..101422,101585..101587)
/locus_tag="O3Y_00480"
/note="Schiff base residues; other site"
/db_xref="CDD:240127"
gene 101961..102389
/locus_tag="O3Y_00485"
/db_xref="GeneID:11913038"
CDS 101961..102389
/locus_tag="O3Y_00485"
/note="COG0454 Histone acetyltransferase HPA2 and related
acetyltransferases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331974.1"
/db_xref="GI:379740005"
/db_xref="GeneID:11913038"
/translation="MLIREGSLSEIVQIVEKIHEFAQKETEQSLQARLNDKTCLVLVA
ENESELLGFKMGYELDNKTFYSWFGGVTPAARGHGVAQRLLDVQEKWALEQGYQRIKV
KSRNQFPAMLRLLIKNGYLIEDYEKKESIIESRIHFVKVL"
misc_feature 102081..102260
/locus_tag="O3Y_00485"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(102168..102173,102201..102206)
/locus_tag="O3Y_00485"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 103098..105902
/locus_tag="O3Y_00490"
/db_xref="GeneID:11913039"
CDS 103098..105902
/locus_tag="O3Y_00490"
/note="COG0258 5'-3' exonuclease (including N-terminal
domain of PolI)"
/codon_start=1
/transl_table=11
/product="DNA polymerase I"
/protein_id="YP_005331975.1"
/db_xref="GI:379740006"
/db_xref="GeneID:11913039"
/translation="MAHIPDNPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVN
MIRSMMRQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAM
GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVL
DREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANL
DKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALM
SLYGKLAFKSWLTELLDGGTGIVTADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQ
YQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAH
DYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQ
SYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDAD
VTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIAL
RLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL
DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQ
NIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHA
ATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFE
RYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGT
AADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA
ELAVPLVAEAGHGDNWEQAH"
misc_feature 103116..105899
/locus_tag="O3Y_00490"
/note="DNA polymerase I; Provisional; Region: PRK05755"
/db_xref="CDD:235591"
misc_feature 103122..103622
/locus_tag="O3Y_00490"
/note="PIN domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: PIN_53EXO; cd09859"
/db_xref="CDD:189029"
misc_feature order(103134..103136,103284..103286,103434..103436,
103440..103445,103509..103511,103515..103517)
/locus_tag="O3Y_00490"
/note="active site"
/db_xref="CDD:189029"
misc_feature order(103134..103136,103440..103442,103509..103511)
/locus_tag="O3Y_00490"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 103302..103340
/locus_tag="O3Y_00490"
/note="putative 5' ssDNA interaction site; other site"
/db_xref="CDD:189029"
misc_feature order(103434..103436,103443..103445)
/locus_tag="O3Y_00490"
/note="metal binding site 3; metal-binding site"
/db_xref="CDD:189029"
misc_feature order(103509..103511,103515..103517)
/locus_tag="O3Y_00490"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 103614..103853
/locus_tag="O3Y_00490"
/note="H3TH domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: H3TH_53EXO; cd09898"
/db_xref="CDD:188618"
misc_feature order(103644..103667,103671..103700,103704..103715)
/locus_tag="O3Y_00490"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:188618"
misc_feature order(103650..103652,103659..103661)
/locus_tag="O3Y_00490"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:188618"
misc_feature 104145..104729
/locus_tag="O3Y_00490"
/note="DEDDy 3'-5' exonuclease domain of Escherichia coli
DNA polymerase I and similar bacterial family-A DNA
polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139"
/db_xref="CDD:176651"
misc_feature order(104175..104186,104193..104195,104367..104372,
104376..104384,104481..104486,104529..104534,
104601..104603,104613..104615)
/locus_tag="O3Y_00490"
/note="active site"
/db_xref="CDD:176651"
misc_feature order(104175..104177,104181..104183,104382..104384,
104601..104603,104613..104615)
/locus_tag="O3Y_00490"
/note="catalytic site [active]"
/db_xref="CDD:176651"
misc_feature order(104178..104186,104193..104195,104367..104372,
104376..104381,104481..104486,104529..104534,
104601..104603,104613..104615)
/locus_tag="O3Y_00490"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176651"
misc_feature 104766..105887
/locus_tag="O3Y_00490"
/note="Polymerase I functions primarily to fill DNA gaps
that arise during DNA repair, recombination and
replication; Region: DNA_pol_A_pol_I_C; cd08637"
/db_xref="CDD:176474"
misc_feature order(105003..105005,105015..105017,105024..105029,
105102..105110,105114..105116,105120..105131,
105225..105230,105312..105314,105372..105374,
105384..105386,105636..105638,105657..105659,
105753..105761)
/locus_tag="O3Y_00490"
/note="active site"
/db_xref="CDD:176474"
misc_feature order(105003..105005,105015..105017,105024..105029,
105102..105110,105114..105116,105120..105131,
105408..105410,105633..105638,105645..105647,
105657..105659,105753..105761)
/locus_tag="O3Y_00490"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176474"
misc_feature order(105225..105230,105234..105236,105312..105314,
105372..105374,105384..105386,105759..105761)
/locus_tag="O3Y_00490"
/note="catalytic site [active]"
/db_xref="CDD:176474"
gene complement(106649..107311)
/gene="engB"
/locus_tag="O3Y_00495"
/db_xref="GeneID:11913040"
CDS complement(106649..107311)
/gene="engB"
/locus_tag="O3Y_00495"
/note="COG0218 Predicted GTPase"
/codon_start=1
/transl_table=11
/product="GTP-binding protein YsxC"
/protein_id="YP_005331976.1"
/db_xref="GI:379740007"
/db_xref="GeneID:11913040"
/translation="MSVKIHYQNTHFITSAPDIRHLPEDEGIEIAFAGRSNAGKSSSL
NRLTNQKNLAKTSKTPGRTQLINLFKVADGCHIVDLPGYGFAQVPLEMKLKWQRALGE
YLQKRQSLKGLVVLMDIRHPMKDLDQQLIIWAVECGIPVQVMLTKADKLKSGARKAQV
LKVREEAKTFGGDVAVDAFSSLSGIGVDTLRAKLDEWYAPMLAALAEQEEGEQPESST
DQ"
misc_feature complement(106721..107227)
/gene="engB"
/locus_tag="O3Y_00495"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature complement(107189..107212)
/gene="engB"
/locus_tag="O3Y_00495"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(106769..106774,106865..106867,
106871..106873,107075..107077,107123..107131,
107138..107146,107186..107206))
/gene="engB"
/locus_tag="O3Y_00495"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature complement(107114..107134)
/gene="engB"
/locus_tag="O3Y_00495"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature complement(107123..107125)
/gene="engB"
/locus_tag="O3Y_00495"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature complement(107066..107077)
/gene="engB"
/locus_tag="O3Y_00495"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(106982..106987,106994..107038,
107057..107068))
/gene="engB"
/locus_tag="O3Y_00495"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature complement(106865..106876)
/gene="engB"
/locus_tag="O3Y_00495"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature complement(106766..106774)
/gene="engB"
/locus_tag="O3Y_00495"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene 107463..108080
/locus_tag="O3Y_00500"
/db_xref="GeneID:11913041"
CDS 107463..108080
/locus_tag="O3Y_00500"
/note="COG2863 Cytochrome c553"
/codon_start=1
/transl_table=11
/product="cytochrome c4"
/protein_id="YP_005331977.1"
/db_xref="GI:379740008"
/db_xref="GeneID:11913041"
/translation="MKKLALILSVLASCSVWAQGSIEAGKAKSLTCAACHGADGNSPL
TIYPKLAGQHEKYLEKQLKELKLGASSGGKQGRYDPVMSAMAMPLSDEDIADLAAYYA
SMPISGNTTPEDVVAQGKVLYTAGDASRGLTACIACHGPRGNGTELSGFPKISGQHAD
YIKAQLEKFRSGTRANDMNEMMRDVAHKLTDADIDILSKYVGGLH"
misc_feature 107463..107837
/locus_tag="O3Y_00500"
/note="Cytochrome c553 [Energy production and conversion];
Region: COG2863"
/db_xref="CDD:225418"
misc_feature 107835..>108062
/locus_tag="O3Y_00500"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:245607"
gene 108282..108920
/locus_tag="O3Y_00505"
/db_xref="GeneID:11913042"
CDS 108282..108920
/locus_tag="O3Y_00505"
/note="COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase"
/codon_start=1
/transl_table=11
/product="methyltransferase-like protein"
/protein_id="YP_005331978.1"
/db_xref="GI:379740009"
/db_xref="GeneID:11913042"
/translation="MHLCPLCHSENSQAYFADKQRDYFQCQQCELVYVNPEQRLSAER
EKGFYDLHQNIPSDEGYRRFLSRVCSPMLERVPPQSQGLDFGCGPGPTLSLMLEEAGH
SMALYDIFYHPDTQVLNRQYDFMTATEVIEHLHDPHRVWQQWLNLVKPGGWIGLMTKM
VKDLDAFAGWHYKNDLTHVIFFSRATFQYLAERDQLELEFIGNDVILLRKTQ"
misc_feature 108462..108878
/locus_tag="O3Y_00505"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:222171"
misc_feature 108528..108743
/locus_tag="O3Y_00505"
/note="Methyltransferase domain; Region: Methyltransf_11;
pfam08241"
/db_xref="CDD:219759"
gene 108920..109468
/locus_tag="O3Y_00510"
/db_xref="GeneID:11913043"
CDS 108920..109468
/locus_tag="O3Y_00510"
/note="COG3078 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="GTPase activator"
/protein_id="YP_005331979.1"
/db_xref="GI:379740010"
/db_xref="GeneID:11913043"
/translation="MSRSKKSRKPGTNSNDQLVVVRTRSESELESRLRKKLKKRKGLK
SGSRHSEGSESQVRQAAQKRDPRLGSKKPIPLIVAEPKKLNKQERKLAAEQELAMLEK
DAQLNVLLDRLDNGEKLGIGLQKYVDEKLDRIEVLMEQLGLLDDEPEPAPAPQSKPTK
KRKTEDDLLSEFEQLDVDKYQD"
misc_feature <109064..109462
/locus_tag="O3Y_00510"
/note="Der GTPase activator; Provisional; Region:
PRK05244"
/db_xref="CDD:235370"
gene 109478..109966
/locus_tag="O3Y_00515"
/db_xref="GeneID:11913044"
CDS 109478..109966
/locus_tag="O3Y_00515"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331980.1"
/db_xref="GI:379740011"
/db_xref="GeneID:11913044"
/translation="MNGMLLASVGGAIIVALASYAAYLLWQVKKQQALQRQQQQLAIE
KRNANIFDSVNILCMAGIQGQCDLSEISIRVYCIMDYVQGEQRINFEQEYPAISELYH
VVKNMPRGEARQQLPKQERMKQNLERTKAESRLQDAIIVELTALKQRIQPLNNQIAIQ
MV"
misc_feature 109517..109915
/locus_tag="O3Y_00515"
/note="Protein of unknown function (DUF2489); Region:
DUF2489; pfam10675"
/db_xref="CDD:220844"
gene 110105..111493
/locus_tag="O3Y_00520"
/db_xref="GeneID:11913045"
CDS 110105..111493
/locus_tag="O3Y_00520"
/note="COG0635 Coproporphyrinogen III oxidase and related
Fe-S oxidoreductases"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_005331981.1"
/db_xref="GI:379740012"
/db_xref="GeneID:11913045"
/translation="MSSYVVPSQQIVWDQAILDKYNYSGPRYTSYPTAVEFHEAFTIA
DFDMACTQYPERPLSLYIHIPFCHKLCYYCGCNKVITRHSHKADEYLDVLEHEIRQRA
SLLIGRNVTQLHFGGGTPTFLTNAQISRLMTLLHSEFHFADEAEISIEIDPREIQLEV
LDHLRQEGFNRVSIGVQDFNKEVQKLVNREQDEQFIFDLVERAKQLGFRSTNLDLIYG
LPKQTAVTFAQTLQQVLTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQ
QTITTLTGAGYQFIGMDHFALPDDELAIAQRSGILHRNFQGYTTQGECDLVGFGVSAI
SMVGDAYAQNQKELKKYYAQVNEMRHALWKGVTLDKDDLLRREVIKQLICNFKLDKTA
IEREFNLRFNHYFRQDLALLQTFIDDGLVTVDERMIEVTLRGRLLIRNICMCFDKYLR
ERARQQQFSRVI"
misc_feature 110129..111490
/locus_tag="O3Y_00520"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK09249"
/db_xref="CDD:236430"
misc_feature 110303..110860
/locus_tag="O3Y_00520"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(110303..110305,110309..110311,110315..110317,
110321..110329,110450..110452,110456..110461,
110552..110560,110627..110629,110750..110752,
110840..110845)
/locus_tag="O3Y_00520"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 111206..111412
/locus_tag="O3Y_00520"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(111557..112753)
/locus_tag="O3Y_00525"
/db_xref="GeneID:11913046"
CDS complement(111557..112753)
/locus_tag="O3Y_00525"
/note="COG3071 Uncharacterized enzyme of heme
biosynthesis"
/codon_start=1
/transl_table=11
/product="HemY protein"
/protein_id="YP_005331982.1"
/db_xref="GI:379740013"
/db_xref="GeneID:11913046"
/translation="MIRLIFLFVVLGLGLFVGTQYAGQQGYVLISIANRTIEMSVTTL
VIFIIGALAALFALEFLVKKILYTSFHTWNWFSVRKQRRSRRYTNEGIIKLLEGDWTQ
AEKKVTRWANHHDMPLLCYLVASEAANGMGDRAKRDRYLALAAQQNNSTLAVELTRAK
QQLGDGDNQAALETLTQLQRNHPHNTVVLNLLKQCYQALGEWQPLLALLPKLVKAKRL
SNEEAQQLEITAQRGILQDIASPKGSEGLMQHWAQLSRKLKAEPELLMCFITQLIQRK
ADYEAFSMIKESLKKQATPELYALLPELNISDRHPLIALLQEALRRDGNNAEAHSALG
QLYLREKHWADAQKHLEKALSLRSSVSDYAYLADALEKQNFTRAAHDVSRKALSLLES
PSAQSS"
misc_feature complement(111560..112753)
/locus_tag="O3Y_00525"
/note="Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism]; Region: HemY; COG3071"
/db_xref="CDD:225613"
misc_feature complement(112355..112678)
/locus_tag="O3Y_00525"
/note="HemY protein N-terminus; Region: HemY_N; pfam07219"
/db_xref="CDD:191703"
misc_feature complement(111578..111817)
/locus_tag="O3Y_00525"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature complement(order(111596..111598,111605..111607,
111617..111619,111653..111655,111695..111697,
111704..111706,111716..111718,111752..111754,
111797..111799,111806..111808))
/locus_tag="O3Y_00525"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature complement(order(111635..111640,111647..111652,
111659..111664,111737..111742,111749..111754,
111758..111763))
/locus_tag="O3Y_00525"
/note="binding surface"
/db_xref="CDD:238112"
gene complement(112750..113949)
/locus_tag="O3Y_00530"
/db_xref="GeneID:11913047"
CDS complement(112750..113949)
/locus_tag="O3Y_00530"
/note="COG2959 Uncharacterized enzyme of heme
biosynthesis"
/codon_start=1
/transl_table=11
/product="uroporphyrin-III C-methyltransferase"
/protein_id="YP_005331983.1"
/db_xref="GI:379740014"
/db_xref="GeneID:11913047"
/translation="MTNNNKPQQEPEITVNPSSAAVTPPTAPDKQDSPAPNQPAAKKT
LDSTPAQDKPPQPNSQGKKLASVALLLVLALGAGFAYVHQQQKSEFNNQLQAVRAELK
QTRDALNAQLEQTVSKATSQATEITHRAETVLEQQQKSIESLQLAVADIKGRRPNDWL
LAEADYLVKLAGRKLFLEHDVETATQLMESADQRIAALNDPSLTALRKAMANDITTLK
NIPLIDRDGLVLRLISLQQQIDSLPLANAILPADQPQTSQAVSENIDDWQTNLKNSLK
AFADNFITFRSRDGNVIPLLSPTQHFYLRENLQAKLETAIKGVYTEQQTLYRIALDTA
AQWSTSFFNPDDKAVQSFNAALAQLAEQQVQVEYPVKLQAQQQLADVINERLRRSVSP
LTTGAEQ"
misc_feature complement(112759..113853)
/locus_tag="O3Y_00530"
/note="HemX; Region: HemX; pfam04375"
/db_xref="CDD:113156"
misc_feature complement(112789..113814)
/locus_tag="O3Y_00530"
/note="putative uroporphyrinogen III C-methyltransferase;
Provisional; Region: PRK10920"
/db_xref="CDD:236795"
gene complement(113933..114700)
/gene="hemD"
/locus_tag="O3Y_00535"
/db_xref="GeneID:11913048"
CDS complement(113933..114700)
/gene="hemD"
/locus_tag="O3Y_00535"
/EC_number="4.2.1.75"
/note="COG1587 Uroporphyrinogen-III synthase"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen-III synthase"
/protein_id="YP_005331984.1"
/db_xref="GI:379740015"
/db_xref="GeneID:11913048"
/translation="MTVLVTRPDEQGAELCQLLHQQGIPALHHPLLAISASPQLAALA
EDLSSFDIIIAVSQHAVIFSDQFLQHRRICWPNNAIYLAVGQKTAHVFSKACQQSVDY
PEISDSEHLLALSMLRDVAGKKVLILRGNGGRELIYSTLVERGATVRYQEAYCRHERP
FAAAECVQKWQLAKVDSLVITSSEQLAFFIRQFETSHLPWVQQLTLLVPSQRIATLAH
QLGFHRIVVTLSAANRDLVAALMPEKPTGTLSNDQQQ"
misc_feature complement(113972..114700)
/gene="hemD"
/locus_tag="O3Y_00535"
/note="uroporphyrinogen-III synthase; Reviewed; Region:
hemD; PRK05928"
/db_xref="CDD:235647"
misc_feature complement(113981..114694)
/gene="hemD"
/locus_tag="O3Y_00535"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature complement(order(114146..114160,114233..114235,
114239..114241,114311..114313,114440..114442,
114524..114532,114680..114682))
/gene="hemD"
/locus_tag="O3Y_00535"
/note="active site"
/db_xref="CDD:119440"
gene complement(114761..115696)
/gene="hemC"
/locus_tag="O3Y_00540"
/db_xref="GeneID:11913049"
CDS complement(114761..115696)
/gene="hemC"
/locus_tag="O3Y_00540"
/EC_number="2.5.1.61"
/note="COG0181 Porphobilinogen deaminase"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_005331985.1"
/db_xref="GI:379740016"
/db_xref="GeneID:11913049"
/translation="MTETPIRIATRQSPLALWQANYVKDALMAAHPGLQVELVTMVTR
GDVILDTPLAKVGGKGLFVKELEIAMLEGRADLAVHSMKDVPVDFPDGLGLVTICERE
DPRDAFVSNTYAKIEDLPSGAIVGTCSLRRQCQLKAARPDLVIKELRGNVGTRLSKLD
AGEYDAIILAAAGLKRLELESRIRSFIEPEQSLPAVGQGAVGIECRVNDQRVRALLAP
LNHADTADRVRCERAMNLTLQGGCQVPIGSYALLEGDTIWLRALVGEPDGSQIVRGEI
RGPRTQAEQLGITLAEQLLSQGAKEILERLYCDHE"
misc_feature complement(114809..115684)
/gene="hemC"
/locus_tag="O3Y_00540"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:234612"
misc_feature complement(114809..115681)
/gene="hemC"
/locus_tag="O3Y_00540"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cd00494"
/db_xref="CDD:238276"
misc_feature complement(order(114878..114880,114884..114886,
114893..114895,114902..114904,114917..114919,
114953..114955,114959..114961,114971..114973,
114992..114994,115001..115006,115016..115018,
115025..115027,115046..115048,115100..115123,
115169..115174,115181..115183,115244..115246,
115283..115285,115295..115300,115304..115306,
115379..115396,115400..115405,115430..115432,
115436..115453,115643..115645,115658..115660))
/gene="hemC"
/locus_tag="O3Y_00540"
/note="domain interfaces; other site"
/db_xref="CDD:238276"
misc_feature complement(order(114971..114973,115100..115105,
115112..115114,115169..115171,115178..115180,
115187..115195,115232..115234,115253..115255,
115301..115306,115310..115318,115445..115450,
115454..115456,115640..115642,115652..115654))
/gene="hemC"
/locus_tag="O3Y_00540"
/note="active site"
/db_xref="CDD:238276"
gene 116053..118584
/gene="cyaA"
/locus_tag="O3Y_00545"
/db_xref="GeneID:11913050"
CDS 116053..118584
/gene="cyaA"
/locus_tag="O3Y_00545"
/EC_number="4.6.1.1"
/note="COG3072 Adenylate cyclase"
/codon_start=1
/transl_table=11
/product="adenylate cyclase"
/protein_id="YP_005331986.1"
/db_xref="GI:379740017"
/db_xref="GeneID:11913050"
/translation="MQAYTQTLIHRLDKLNRQRIERALALMDLQSQRVFHLIPALFQF
NHPLIPGYFSADTPFGIHLFEANPIQQQFIDDAQLTLGEPLTPADNPAILGLYTMGST
SSIGQSTSSDLDIWVCVSAQMSCEARDNLSSKCLLITDWAKSQGVEANFFIMNEERFR
HNHSEALSGENCGSSQHLLLLDEFYRSAVRLAGKRLLWQIVPPEMEECYDEYVHELCS
NGYLNCNEWIDFGKLNRIPAEEYFGANLWQLYKSIDSPYKSVLKAILLEAYSWEYPHT
QLLSIDSKRRFFADEPDLYGMDSYYQMLEKVTRYLVRIGDSTRLDLVRRCFYLKTHEK
LSREPGVGSMPWRREALRELTSEWQWSADLIAELDNRRHWKVEQVKVVHHALLDALML
SYRNLIQFARRNDITSAISPQDISILARKLYAAFEVLPGKVTLLNPQISPDLHEPDLS
FIEVCAGRTNKPGWYLYKQPLQAQRLIGQPYLEHNEYLSKLVAWAFFNGLITESTRLH
AVVREAQLDIDKFYQMVSDLRNTFSLRKRRPTMQALANPCEISQLAMFINFEHDPTSE
LSGKALKVDLKNIDIFSFGAEQKCLVGSVDLVYRNSWQEVRTLHFEGQTAMLDALKTV
LGKMHQDALPPESVDVFCYSKNLRGVMRNLVYQLLAECIDLRLKPMEQEKRRRFKALR
MGDQMYGLFFERRGVSVQKLENSVDFYRSISTNKLKGSPLLMLDRDQDYPLPAVVDSF
ASEGLVQFFFEDTEKGFNIYVLDEANRVEVYHQFNGEKDEMIASVNSFYTSMLDDSNK
LGAKSINFNLPQYYQIIHPEEGETYVVPYRNDSAVYSKPSQVVNA"
misc_feature 116053..118581
/gene="cyaA"
/locus_tag="O3Y_00545"
/note="Adenylate cyclase [Nucleotide transport and
metabolism]; Region: CyaA; COG3072"
/db_xref="CDD:225614"
misc_feature 116053..116649
/gene="cyaA"
/locus_tag="O3Y_00545"
/note="Adenylate cyclase NT domain; Region: Adenyl_cycl_N;
pfam12633"
/db_xref="CDD:221677"
misc_feature 116728..118548
/gene="cyaA"
/locus_tag="O3Y_00545"
/note="Adenylate cyclase, class-I; Region: Adenylate_cycl;
pfam01295"
/db_xref="CDD:216418"
gene complement(118690..119004)
/gene="cyaY"
/locus_tag="O3Y_00550"
/db_xref="GeneID:11913051"
CDS complement(118690..119004)
/gene="cyaY"
/locus_tag="O3Y_00550"
/note="COG1965 Protein implicated in iron transport,
frataxin homolog"
/codon_start=1
/transl_table=11
/product="frataxin-like protein"
/protein_id="YP_005331987.1"
/db_xref="GI:379740018"
/db_xref="GeneID:11913051"
/translation="MNETEFHQLVDSQLERIEAAIDEAGADIDYETSGNVMTLEFDDG
SQIIINRQEPMREIWLASKSGGYHFKSIDGEWICSKTGLELLTLLKQECDKHADEPID
WV"
misc_feature complement(118696..119004)
/gene="cyaY"
/locus_tag="O3Y_00550"
/note="Frataxin is a nuclear-encoded mitochondrial protein
implicated in Friedreich's ataxia (FRDA), an human
autosomal recessive neurodegenerative disease; Frataxin is
found in eukaryotes and in purple bacteria; lack of
frataxin causes iron to accumulate...; Region: Frataxin;
cd00503"
/db_xref="CDD:238280"
misc_feature complement(order(118918..118920,118936..118941,
118948..118950,118960..118962,118969..118974,
118996..118998))
/gene="cyaY"
/locus_tag="O3Y_00550"
/note="putative iron binding site [ion binding]; other
site"
/db_xref="CDD:238280"
gene 119080..119196
/locus_tag="O3Y_00555"
/db_xref="GeneID:11913052"
CDS 119080..119196
/locus_tag="O3Y_00555"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331988.1"
/db_xref="GI:379740019"
/db_xref="GeneID:11913052"
/translation="MKKKFTALFLLSALALAGCGQTGPLYMPDDAKQSEQSQ"
misc_feature <119131..119163
/locus_tag="O3Y_00555"
/note="Prokaryotic lipoprotein-attachment site; Region:
LPAM_2; cl02361"
/db_xref="CDD:243004"
gene 119229..120482
/locus_tag="O3Y_00560"
/db_xref="GeneID:11913053"
CDS 119229..120482
/locus_tag="O3Y_00560"
/note="COG0019 Diaminopimelate decarboxylase"
/codon_start=1
/transl_table=11
/product="diaminopimelate decarboxylase"
/protein_id="YP_005331989.1"
/db_xref="GI:379740020"
/db_xref="GeneID:11913053"
/translation="MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHA
FDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVF
SGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTH
PYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRL
LALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEP
GRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEA
QTYDLVGPVCETSDFLGKDRDLVLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVD
GNKTYLVRQREELSSLWALESVLPE"
misc_feature 119238..120467
/locus_tag="O3Y_00560"
/note="diaminopimelate decarboxylase; Region: lysA;
TIGR01048"
/db_xref="CDD:233248"
misc_feature 119304..120401
/locus_tag="O3Y_00560"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Diaminopimelate Decarboxylase; Region:
PLPDE_III_DapDC; cd06828"
/db_xref="CDD:143501"
misc_feature order(119403..119405,119409..119411,119466..119468,
119535..119537,119676..119678,119820..119822,
119826..119828,119835..119837,119943..119948,
120051..120062,120168..120170,120180..120182,
120258..120260,120342..120344,120354..120356,
120366..120368)
/locus_tag="O3Y_00560"
/note="active site"
/db_xref="CDD:143501"
misc_feature order(119403..119405,119409..119411,119466..119468,
119535..119537,119676..119678,119820..119822,
119826..119828,119835..119837,119943..119948,
120051..120062,120258..120260,120342..120344)
/locus_tag="O3Y_00560"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143501"
misc_feature order(119409..119411,119826..119828,119835..119837,
120060..120062,120168..120170,120180..120182,
120258..120263,120342..120344,120354..120356,
120366..120368)
/locus_tag="O3Y_00560"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143501"
misc_feature order(119409..119411,120258..120260)
/locus_tag="O3Y_00560"
/note="catalytic residues [active]"
/db_xref="CDD:143501"
misc_feature order(119424..119429,119472..119477,119481..119486,
119541..119549,119559..119561,119604..119606,
119613..119615,119736..119747,120105..120107,
120111..120113,120132..120134,120138..120140,
120249..120266,120270..120272,120351..120359,
120363..120374,120381..120383)
/locus_tag="O3Y_00560"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143501"
gene 120494..121324
/gene="dapF"
/locus_tag="O3Y_00565"
/db_xref="GeneID:11913054"
CDS 120494..121324
/gene="dapF"
/locus_tag="O3Y_00565"
/EC_number="5.1.1.7"
/note="COG0253 Diaminopimelate epimerase"
/codon_start=1
/transl_table=11
/product="diaminopimelate epimerase"
/protein_id="YP_005331990.1"
/db_xref="GI:379740021"
/db_xref="GeneID:11913054"
/translation="MHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGF
DQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTK
KGKMVLNVEEEDLITVNMGVPEFEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNP
HVVTVVDDIRTAAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQA
CGSGACAAVAVGILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQISC
"
misc_feature 120494..121321
/gene="dapF"
/locus_tag="O3Y_00565"
/note="diaminopimelate epimerase; Provisional; Region:
dapF; PRK00450"
/db_xref="CDD:234768"
misc_feature 120506..120868
/gene="dapF"
/locus_tag="O3Y_00565"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:216645"
misc_feature 120953..121300
/gene="dapF"
/locus_tag="O3Y_00565"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:216645"
gene 121338..122036
/locus_tag="O3Y_00570"
/db_xref="GeneID:11913055"
CDS 121338..122036
/locus_tag="O3Y_00570"
/note="COG3159 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331991.1"
/db_xref="GI:379740022"
/db_xref="GeneID:11913055"
/translation="MSQVTADALTAQVVAEYLYEHPDFFQHHPHLVERLALPTQTGAV
SLAHVQLARQRQRIDSLEEEITALMSLAANNDRTFHEFMDLQEQILKCSSLQAVLHAI
EAKARELNLRAYVRLLQRHDEKYGLASEDWQRFATNHFNGKSAYLGRLRQADRQRLLG
DRPAPEMGSYVVLPLQRQAPLGILAFASEDGGHFQPSMDTLFLRHLALVLAHLIETLP
WQSHDEERRTHPAS"
misc_feature 121347..122000
/locus_tag="O3Y_00570"
/note="Protein of unknown function, DUF484; Region:
DUF484; pfam04340"
/db_xref="CDD:202976"
gene 122005..122940
/gene="xerC"
/locus_tag="O3Y_00575"
/db_xref="GeneID:11913056"
CDS 122005..122940
/gene="xerC"
/locus_tag="O3Y_00575"
/note="COG4973 Site-specific recombinase XerC"
/codon_start=1
/transl_table=11
/product="site-specific tyrosine recombinase XerC"
/protein_id="YP_005331992.1"
/db_xref="GI:379740023"
/db_xref="GeneID:11913056"
/translation="MKNDERTPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLET
MTQYLVQVGLTHWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGEL
QANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAE
LVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFV
SKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGH
ENIATTQIYTHLDFQHLAQVYDQAHPRARKKNKDD"
misc_feature 122026..122925
/gene="xerC"
/locus_tag="O3Y_00575"
/note="Site-specific recombinase XerC [DNA replication,
recombination, and repair]; Region: XerC; COG4973"
/db_xref="CDD:227307"
misc_feature 122053..122895
/gene="xerC"
/locus_tag="O3Y_00575"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:241691"
misc_feature order(122473..122478,122545..122547,122746..122754,
122857..122859)
/gene="xerC"
/locus_tag="O3Y_00575"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238231"
misc_feature order(122473..122475,122545..122547,122752..122754,
122761..122763,122830..122832,122857..122859)
/gene="xerC"
/locus_tag="O3Y_00575"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:238231"
misc_feature order(122473..122475,122752..122754,122761..122763,
122830..122832,122857..122859)
/gene="xerC"
/locus_tag="O3Y_00575"
/note="active site"
/db_xref="CDD:238231"
gene 122943..123662
/locus_tag="O3Y_00580"
/db_xref="GeneID:11913057"
CDS 122943..123662
/locus_tag="O3Y_00580"
/note="COG1011 Predicted hydrolase (HAD superfamily)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331993.1"
/db_xref="GI:379740024"
/db_xref="GeneID:11913057"
/translation="MLFYRPLASIQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHP
ITATRPLAWWLAMKRDIARRFPEQCHDVSQWRYLQVQHGLLELGYAQPEAEQAASETL
EQVMRWRNQVDVPAETHRVLAQLAAKVPLIAITNGNVQIEKIGLSGYFQTVLRAGPDG
RAKPYPDLFAQAAQQLQLEPRSILHVGDHLQTDVLGARQNGFQACWFNDQGQSIRRLA
KASVLPDVEIERLSELLLIVN"
misc_feature 122943..123644
/locus_tag="O3Y_00580"
/note="flavin mononucleotide phosphatase; Provisional;
Region: PRK10748"
/db_xref="CDD:182696"
misc_feature <123363..123560
/locus_tag="O3Y_00580"
/note="REG-2-like, HAD superfamily (subfamily IA)
hydrolase; Region: DREG-2; TIGR02252"
/db_xref="CDD:200170"
gene 123772..126261
/locus_tag="O3Y_00585"
/db_xref="GeneID:11913058"
CDS 123772..126261
/locus_tag="O3Y_00585"
/note="COG2199 FOG: GGDEF domain"
/codon_start=1
/transl_table=11
/product="sensory box/GGDEF family protein"
/protein_id="YP_005331994.1"
/db_xref="GI:379740025"
/db_xref="GeneID:11913058"
/translation="MFTVSRLIPDLASANQVLETMDLPHGQSILVQIFSPLSREHVVQ
LARLIRSRHPQACLLGCSTEEVIFQGEVHHQVTLLQITVFEQTYLSRAVVDYSDDEAA
DAERLARQLELTSMSRAVVCFSWQMDTLQVARFALRDTQGAPVPVAGGAAKQTPSGRW
VLLDEACYQNASVAIALHGEALYVETGGYTEWQPVGRTYRVTAVEGDRVLRLDDEPIE
AIYQRNLGAQADLPHDWLISFPLMKGECRHQDLYLPLGLAEEGGLRFNRPLALQDEVR
FCFDHPSLTLERVYLTAQQLQAKQCQQVWVFNCALRLNFMHENHELQPLQAVAPTDGC
YCWGELLYEHGQQQVMHHSMTFLALREGAVRDDLVPIPLPSYPEGMTSPLFNLIRHAF
HDLDAMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLANFAANEHLIALKVT
NFNQINEKYGYPVGDKLLRDLSEQFQVFLDQKLAGQSGLYAIGVGEWATVFRAKLDGK
SIHSHFYQFVEQLEHVNFEPYGLPNVDYLSISLCAGLVSQGDFAEHSPDELLLRAIEA
RRYAFNNNHHFCNAARLKVQESVRQERLNWLSRVSRAVVRDDVVVYAQPICQARSHIV
ASYECLVRIEDEGEIILPGNFLPIITDTHLYTRLSRQMITHTFNMMRHRPEAFSINLS
PQDLMSERTLQHLEAAIKSVADPARVGLEVLESEQIKDYGRMIEVCNHFRTLGATIIV
DDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAE
FVHNQTVCRISEDMGVDYLQGYFLGRPSRLG"
misc_feature 123772..124839
/locus_tag="O3Y_00585"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3287"
/db_xref="CDD:225825"
misc_feature 123859..124419
/locus_tag="O3Y_00585"
/note="FIST N domain; Region: FIST; pfam08495"
/db_xref="CDD:219867"
misc_feature 124426..124791
/locus_tag="O3Y_00585"
/note="FIST C domain; Region: FIST_C; pfam10442"
/db_xref="CDD:220757"
misc_feature 124960..125478
/locus_tag="O3Y_00585"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:225109"
misc_feature 125023..125469
/locus_tag="O3Y_00585"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(125113..125115,125254..125256)
/locus_tag="O3Y_00585"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(125128..125130,125137..125142,125152..125154,
125164..125166,125248..125259)
/locus_tag="O3Y_00585"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(125233..125235,125329..125331)
/locus_tag="O3Y_00585"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 125605..126255
/locus_tag="O3Y_00585"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
gene complement(126294..126890)
/locus_tag="O3Y_00590"
/db_xref="GeneID:11913059"
CDS complement(126294..126890)
/locus_tag="O3Y_00590"
/note="COG3148 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331995.1"
/db_xref="GI:379740026"
/db_xref="GeneID:11913059"
/translation="MNAACPDCGLKFQCLCSAVPSFHAPFQLSLLTHDNEWQRETNTG
RWLVKSMAECQAYTWSRVAANTELQARLTQPNARSFLVYPSEESVELTDALRSLREDE
IAHFIVLDATWQEARKMERKSPWLADVPRVHLTTDHVSAYRLRRNQQPGNLCTLEVGL
MLLRHFNAEASAEALEQFYHYSMNAFKADKSGHRWIER"
misc_feature complement(126297..126890)
/locus_tag="O3Y_00590"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3148"
/db_xref="CDD:225690"
gene complement(126887..128431)
/locus_tag="O3Y_00595"
/db_xref="GeneID:11913060"
CDS complement(126887..128431)
/locus_tag="O3Y_00595"
/note="COG3650 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_005331996.1"
/db_xref="GI:379740027"
/db_xref="GeneID:11913060"
/translation="MRALPFCAMSLAMLLQACTNTTSVSVEPDSAPIIPATLDKPETI
QPQSFMLRGEVVVGHEVRRFTPCGSHQQYWLNLSPEQLNEAMALNRSPYQPLYGELVG
TLTPPSQTGFNGDYVARIEVQSINQLSNESRGCEQPLSPTRAFGNEPFWSMRFVDGGL
QFQPMGGDKQQFSITRSQLSQDKRRYQFDGGELLLEQGQCRDGMSDNLYQWRSKLTLK
GGQYQGCATLANLDPTLEWSGVYFASSTEQTGFSVSLTLEKDHTAQTRYEYANGEPAV
VEQGYWQQLNPNQIQVVMTRHQQQYLLSERIFTREGYQLTATQEKVGQSVYNIADGGL
VLFRSLVELNESAVPPAVGQAAIHAQQIAGRADYEEDVDQAIRRYFNLHQTSPDNTQY
RWLKYDLNGDEQPELLVQLDWCGTGGCTLLIFDQHNQQWRFNSRITLVQNPIRLGKQT
HHGWQDLLFSVSGGGAKPAIHRLQYNGISYPTNPSVAPEANAEQISQVVLFADGLSPR
QSGIKL"
misc_feature complement(127718..128161)
/locus_tag="O3Y_00595"
/note="Predicted membrane protein [Function unknown];
Region: COG3650"
/db_xref="CDD:226176"
gene complement(128715..129542)
/locus_tag="O3Y_00600"
/db_xref="GeneID:11913061"
CDS complement(128715..129542)
/locus_tag="O3Y_00600"
/note="COG0561 Predicted hydrolases of the HAD
superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005331997.1"
/db_xref="GI:379740028"
/db_xref="GeneID:11913061"
/translation="MTTSAHKHPYKIVASDLDGTLLAPNHQLSEFSKQTLKQLHDKGF
TFIFATGRHHIDVAGIREIAGIPAYMITSNGARVHDQNDQLMYSKNVPQDLVQAIIDV
VKHDKQLFVHLYRNDEWMLNKEDEILRDFHEDSGFTYRVFDVNNAPTDGIAKIFFTQE
DQDHEHLVQYETLLNQRFGDKLNVAFSTPWCLEVMCAGVSKGDALQAVAESLHLGLEN
CIAFGDGMNDVEMLSMAGKGLVMGTAHEKVFNALPDNEVIGSNADDAVAHYLHQHLF"
misc_feature complement(128733..129515)
/locus_tag="O3Y_00600"
/note="putative hydrolase; Provisional; Region: PRK10976"
/db_xref="CDD:182878"
misc_feature complement(<129273..129509)
/locus_tag="O3Y_00600"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(order(129390..129395,129489..129497))
/locus_tag="O3Y_00600"
/note="active site"
/db_xref="CDD:119389"
misc_feature complement(129480..129497)
/locus_tag="O3Y_00600"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature complement(129393..129395)
/locus_tag="O3Y_00600"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature complement(128835..>128963)
/locus_tag="O3Y_00600"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
cl17202"
/db_xref="CDD:247756"
gene complement(129657..130673)
/locus_tag="O3Y_00605"
/db_xref="GeneID:11913062"
CDS complement(129657..130673)
/locus_tag="O3Y_00605"
/note="COG2267 Lysophospholipase"
/codon_start=1
/transl_table=11
/product="lysophospholipase"
/protein_id="YP_005331998.1"
/db_xref="GI:379740029"
/db_xref="GeneID:11913062"
/translation="MNPEKNLYPYTQESSLEQALNFEIAQVWHTRSEGTYRSFDKTHI
YWCSLKHPEHQKAVVIVNGRIESAWKYQELCYDLFRQGFDVYTYDHRGQGRSERLTED
RQIGHVHEFQDYVTDLKALVEHFDLGHYQERFLLAHSMGGAIATRYIQTTPAHPFSAL
ALSAPMFGVNMPWYLRPWALLITQIMAAVTLKPSYAPGYGPYHAKPFHLNLLTHSETR
YQLFRELYEAHPELQIGGPSHRWVWQSLMATKQCLQLTRQIKIPMLILQAGEEAIVCN
RAQIRLFKKLSRTQKRAALCRIAGARHELLFEQDAYRNQTLDHILRFFADSTIDHKRQ
HHRP"
misc_feature complement(129696..130592)
/locus_tag="O3Y_00605"
/note="lysophospholipase L2; Provisional; Region:
PRK10749"
/db_xref="CDD:182697"
misc_feature complement(130305..130553)
/locus_tag="O3Y_00605"
/note="Putative lysophospholipase; Region: Hydrolase_4;
pfam12146"
/db_xref="CDD:221442"
gene 130748..131365
/gene="rhtB"
/locus_tag="O3Y_00610"
/db_xref="GeneID:11913063"
CDS 130748..131365
/gene="rhtB"
/locus_tag="O3Y_00610"
/note="COG1280 Putative threonine efflux protein"
/codon_start=1
/transl_table=11
/product="homoserine/homoserine lactone efflux protein"
/protein_id="YP_005331999.1"
/db_xref="GI:379740030"
/db_xref="GeneID:11913063"
/translation="MDIHVWLAYLLTAVVFSLAPGSGTVNSISNGLSYGTRHSLGAII
GLQIGLACHIVLVGIGIGALVAQSALAFTLIKWIGAAYLVWLGIQKWRDRAPLTATTT
SHELSQAALLRKAVLINLTNPKSIVFLVALFPQFIDPTRDHWPQFLVLGITTVTIDAI
VMFGYTALAAQLGRYIRSPNIMTRMNKLFGSMFMGCGMLLATAKA"
misc_feature 130748..131362
/gene="rhtB"
/locus_tag="O3Y_00610"
/note="homoserine/homoserine lactone efflux protein;
Provisional; Region: rhtB; PRK10520"
/db_xref="CDD:182514"
gene 131385..132611
/locus_tag="O3Y_00615"
/db_xref="GeneID:11913064"
CDS 131385..132611
/locus_tag="O3Y_00615"
/note="COG3434 Predicted signal transduction protein
containing EAL and modified HD-GYP domains"
/codon_start=1
/transl_table=11
/product="signal transduction protein"
/protein_id="YP_005332000.1"
/db_xref="GI:379740031"
/db_xref="GeneID:11913064"
/translation="MYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEYMDADRATY
RLIVENFLSLGTNPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQPTDDLF
EAVQELSQRGYLLALDDFVYSPAWERFLPYVQIVKIDIMAMGLDKACEFVRGRLAQGS
RRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREVCQ
PEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSL
AVASYISSKKPKELYNLSLQRAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSI
EQLVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGVEQHCLELGFDLEDVRQ
ELIEAQRWSQDINRLI"
misc_feature 131388..132608
/locus_tag="O3Y_00615"
/note="Predicted signal transduction protein containing
EAL and modified HD-GYP domains [Signal transduction
mechanisms]; Region: COG3434"
/db_xref="CDD:225968"
misc_feature 131409..131966
/locus_tag="O3Y_00615"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
gene complement(132791..133261)
/locus_tag="O3Y_00620"
/db_xref="GeneID:11913065"
CDS complement(132791..133261)
/locus_tag="O3Y_00620"
/note="COG0783 DNA-binding ferritin-like protein
(oxidative damage protectant)"
/codon_start=1
/transl_table=11
/product="starvation-inducible DNA-binding protein"
/protein_id="YP_005332001.1"
/db_xref="GI:379740032"
/db_xref="GeneID:11913065"
/translation="MATNLIGLDTTQSQKLANALNNLLANYQVFYMNTRGYHWNIQGK
EFFELHAKFEEIYTDLQLKIDELAERILTLSARPMHSFSGYLKAAQIKEHTDSIDGRS
SMQGLVDGFSILLHQQRDILELAGETGDEGTSALMSDYIREQEKLVWMLNAWLK"
misc_feature complement(132794..133261)
/locus_tag="O3Y_00620"
/note="DNA-binding ferritin-like protein (oxidative damage
protectant) [Inorganic ion transport and metabolism];
Region: Dps; COG0783"
/db_xref="CDD:223854"
misc_feature complement(132797..133183)
/locus_tag="O3Y_00620"
/note="DPS protein, ferritin-like diiron-binding domain;
Region: DPS; cd01043"
/db_xref="CDD:153102"
misc_feature complement(order(133055..133060,133067..133069,
133079..133081,133112..133114,133145..133150,
133154..133156,133166..133171))
/locus_tag="O3Y_00620"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153102"
misc_feature complement(order(133055..133057,133067..133069,
133100..133102,133112..133114,133148..133150))
/locus_tag="O3Y_00620"
/note="DPS ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153102"
misc_feature complement(order(132845..132850,132869..132871))
/locus_tag="O3Y_00620"
/note="ion pore; other site"
/db_xref="CDD:153102"
gene complement(133431..133760)
/locus_tag="O3Y_00625"
/db_xref="GeneID:11913066"
CDS complement(133431..133760)
/locus_tag="O3Y_00625"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332002.1"
/db_xref="GI:379740033"
/db_xref="GeneID:11913066"
/translation="MPFTLLISLALLIIAAVWFFSHFYRRHMQGENAPQRSAEVTILD
KQAIDIPHPLPGQDDQEFWIYVQKGRLGPKREFQVGIHYYHALNPGDKGVLTYQGQRF
LHFALKR"
misc_feature complement(133440..133712)
/locus_tag="O3Y_00625"
/note="Protein of unknown function (DUF2500); Region:
DUF2500; pfam10694"
/db_xref="CDD:151190"
gene 133965..134333
/locus_tag="O3Y_00630"
/db_xref="GeneID:11913067"
CDS 133965..134333
/locus_tag="O3Y_00630"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332003.1"
/db_xref="GI:379740034"
/db_xref="GeneID:11913067"
/translation="MSEIEQVVLRTRKLETLLREQYHAEGKGLHQLITSCEERLPHDV
IKKLRYVATIRNKVVHEDDYRLDDRKAFLAVCQECEDELTPRSGKFVWRIAFMLMMLM
TLGALFFYYWHWEELSQHFQ"
gene complement(134395..134475)
/locus_tag="O3Y_00635"
/db_xref="GeneID:11913068"
CDS complement(134395..134475)
/locus_tag="O3Y_00635"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332004.1"
/db_xref="GI:379740035"
/db_xref="GeneID:11913068"
/translation="MISSSQKQGLVMIAVIIGLMTLPMMY"
gene 134836..135093
/locus_tag="O3Y_00640"
/db_xref="GeneID:11913069"
CDS 134836..135093
/locus_tag="O3Y_00640"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332005.1"
/db_xref="GI:379740036"
/db_xref="GeneID:11913069"
/translation="MFLSFICFYIFKNGSYFSFICLVGCFQFFDFFVVVFIGFLFLFC
SFGLVDFSFFYFVLIVFHLFGVDLLSWFGWWQVFLFCNFIE"
gene 135216..135839
/locus_tag="O3Y_00645"
/db_xref="GeneID:11913070"
CDS 135216..135839
/locus_tag="O3Y_00645"
/note="COG3714 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332006.1"
/db_xref="GI:379740037"
/db_xref="GeneID:11913070"
/translation="MLSWISVVLSGFISISAYENQKLKQAIFFRIFSLLLLTIIVWEQ
HSHATPEVIFISLGLAVSMFAHGLRLNHRYHKASFVLFLVAQLLFSKAFWVQLSGSMV
WWLPALLVAASIVAFFLLLPQIDTLIFPVTIMGLMLVQMTWAAGELWLQEATVASGAG
FLGCLVYILSATLLAIHDYRRPLPWGHTLISSSYLIAQALISASIVF"
misc_feature 135216..135836
/locus_tag="O3Y_00645"
/note="Predicted membrane protein [Function unknown];
Region: COG3714"
/db_xref="CDD:33509"
gene complement(135888..136154)
/locus_tag="O3Y_00650"
/db_xref="GeneID:11913071"
CDS complement(135888..136154)
/locus_tag="O3Y_00650"
/note="COG3776 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332007.1"
/db_xref="GI:379740038"
/db_xref="GeneID:11913071"
/translation="MKALLWLAKAAIGFVWLVLLFNIVMPFPGNAAIALYIMTAFLLF
MHGLQMLIFIGAFGDKVPLKRWEKWSILIFGIFALLDIRRKYMM"
misc_feature complement(135891..136154)
/locus_tag="O3Y_00650"
/note="Predicted membrane protein [Function unknown];
Region: COG3776"
/db_xref="CDD:226299"
gene complement(136151..136750)
/locus_tag="O3Y_00655"
/db_xref="GeneID:11913072"
CDS complement(136151..136750)
/locus_tag="O3Y_00655"
/note="COG0742 N6-adenine-specific methylase"
/codon_start=1
/transl_table=11
/product="ribosomal RNA small subunit methyltransferase D"
/protein_id="YP_005332008.1"
/db_xref="GI:379740039"
/db_xref="GeneID:11913072"
/translation="MQRRRQPNPSQKKAPTGQVRIISGLWRGRKLPVHDAEGLRPTTD
RVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNV
QSLKAENIELIHTDALAFLRQSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAM
IYIECEKELPLTELPPHWHLHREKSAGQVCYRLFIREEQ"
misc_feature complement(136157..136699)
/locus_tag="O3Y_00655"
/note="N6-adenine-specific methylase [DNA replication,
recombination, and repair]; Region: COG0742"
/db_xref="CDD:223813"
misc_feature complement(<136340..136567)
/locus_tag="O3Y_00655"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(136349..136351,136400..136408,
136481..136486,136535..136555))
/locus_tag="O3Y_00655"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 136954..138129
/locus_tag="O3Y_00660"
/db_xref="GeneID:11913073"
CDS 136954..138129
/locus_tag="O3Y_00660"
/note="COG0552 Signal recognition particle GTPase"
/codon_start=1
/transl_table=11
/product="signal recognition particle-docking protein
FtsY"
/protein_id="YP_005332009.1"
/db_xref="GI:379740040"
/db_xref="GeneID:11913073"
/translation="MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVA
IQTETALTETETETETETETETETETATVEPARIVEQEKPTESFFARLKRSLSRTKAN
IGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEAL
YGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKV
MLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIAD
TAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPI
TGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE"
misc_feature 137194..138126
/locus_tag="O3Y_00660"
/note="signal recognition particle-docking protein FtsY;
Provisional; Region: PRK10416"
/db_xref="CDD:236686"
misc_feature <137344..137469
/locus_tag="O3Y_00660"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; smart00963"
/db_xref="CDD:214941"
misc_feature 137515..138051
/locus_tag="O3Y_00660"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:239389"
misc_feature 137533..137556
/locus_tag="O3Y_00660"
/note="P loop; other site"
/db_xref="CDD:239389"
misc_feature order(137623..137625,137788..137790,137971..137973,
137980..137985)
/locus_tag="O3Y_00660"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:239389"
gene 138178..138852
/locus_tag="O3Y_00665"
/db_xref="GeneID:11913074"
CDS 138178..138852
/locus_tag="O3Y_00665"
/note="COG2884 Predicted ATPase involved in cell division"
/codon_start=1
/transl_table=11
/product="cell division ATP-binding protein FtsE"
/protein_id="YP_005332010.1"
/db_xref="GI:379740041"
/db_xref="GeneID:11913074"
/translation="MIRFQQVSKAYRGGRQALQKVDFHLRRGEMAFLGGHSGAGKSTL
LKLICAIERPTDGKISFNGHDITRIPNKDIPFLRRNIGIVFQDHRLLMDRSIYDNVAL
PMRIESISENEIKRRVSAALDKTGLLDKARCLPSQLSGGEQQRVGIARAVVNRPTLLL
ADEPTGNLDPELSSRVLRLFEEFNRAGVTILLATHDIHLVNSRPQYRHLELNQGFLSE
VADYGR"
misc_feature 138178..138849
/locus_tag="O3Y_00665"
/note="Predicted ATPase involved in cell division [Cell
division and chromosome partitioning]; Region: FtsE;
COG2884"
/db_xref="CDD:225438"
misc_feature 138181..138825
/locus_tag="O3Y_00665"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 138280..138303
/locus_tag="O3Y_00665"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(138289..138294,138298..138306,138433..138435,
138661..138666,138760..138762)
/locus_tag="O3Y_00665"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 138424..138435
/locus_tag="O3Y_00665"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 138589..138618
/locus_tag="O3Y_00665"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 138649..138666
/locus_tag="O3Y_00665"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 138673..138684
/locus_tag="O3Y_00665"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 138748..138768
/locus_tag="O3Y_00665"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 138842..139834
/locus_tag="O3Y_00670"
/db_xref="GeneID:11913075"
CDS 138842..139834
/locus_tag="O3Y_00670"
/note="COG2177 Cell division protein"
/codon_start=1
/transl_table=11
/product="cell division protein FtsX"
/protein_id="YP_005332011.1"
/db_xref="GI:379740042"
/db_xref="GeneID:11913075"
/translation="MAVKPGNQKISKTTKSTKSKPRDVKRAKTDSFLAIHFKQAKASF
AALWRRPLGNILTLAVISMALALPASLYLLSKNIASVAERVAEPSQLSVYLHIDTPEP
RIIVLKDDLERRDEIAKVKYISPQQGLDDLSQYAGFEQAISLLDNATLPAVLVVTPKV
DSREQIQTLAKALQAEEGVTDVRMDEDWFARLDAIRHLATIVVISLSSLMLMSVFLIV
GNTLRFNVQANKEEIQTMKLIGATDAYILRPYLYSGMWFGLLGAVAAWLLTALMTILL
NGAVEALAQLYDSRFRLIGLGWDESLLLLMLGVFLGCVAAKVSAKRHLKEIEPV"
misc_feature 138932..139831
/locus_tag="O3Y_00670"
/note="Cell division protein [Cell division and chromosome
partitioning]; Region: FtsX; COG2177"
/db_xref="CDD:225088"
misc_feature 138962..139828
/locus_tag="O3Y_00670"
/note="cell division ABC transporter subunit FtsX;
Provisional; Region: ftsX; PRK11026"
/db_xref="CDD:182910"
gene 140004..140864
/locus_tag="O3Y_00675"
/db_xref="GeneID:11913076"
CDS 140004..140864
/locus_tag="O3Y_00675"
/note="COG0568 DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32)"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-32"
/protein_id="YP_005332012.1"
/db_xref="GI:379740043"
/db_xref="GeneID:11913076"
/translation="MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYK
GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLV
SFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARE
LGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENW
EAHTTQRLSMALASLDERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAM
RKLKEAVGEF"
misc_feature 140004..140861
/locus_tag="O3Y_00675"
/note="RNA polymerase factor sigma-32; Reviewed; Region:
PRK06596"
/db_xref="CDD:235838"
misc_feature 140040..>140123
/locus_tag="O3Y_00675"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature 140160..140372
/locus_tag="O3Y_00675"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature 140673..140843
/locus_tag="O3Y_00675"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(140703..140705,140733..140735,140760..140765,
140793..140795,140799..140804,140808..140816,
140820..140825,140829..140831)
/locus_tag="O3Y_00675"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(141066..142466)
/locus_tag="O3Y_00680"
/db_xref="GeneID:11913077"
CDS complement(141066..142466)
/locus_tag="O3Y_00680"
/EC_number="1.6.1.1"
/note="COG1249 Pyruvate/2-oxoglutarate dehydrogenase
complex, dihydrolipoamide dehydrogenase (E3) component,
and related enzymes"
/codon_start=1
/transl_table=11
/product="soluble pyridine nucleotide transhydrogenase"
/protein_id="YP_005332013.1"
/db_xref="GI:379740044"
/db_xref="GeneID:11913077"
/translation="MGQKNHFDVIVIGSGPGGEGAAMGLTKGGKNVAIIEKESSVGGG
CTHWGTIPSKALRHAVSRIIEFNSNPLFCKNNSSIHATFSTILSHAKSVIDKQTRLRQ
GFYDRNQCTLIFGAAHFIDAHTVAVKKADGSIDTYSADKFVIATGSRPYHPKDVDFGH
PRIYDSDSILNLEHDPRHIIIYGAGVIGCEYASIFRGLDVKTDLINTRDRLLSFLDNE
VSDALSYHFWNSGVVIRNDETYDKVEGTSDGVIVHLKSGKKMRADCLLYANGRTGNTD
KLNLESVGLQADSRGQLVVNANYQTQVEHIYAVGDVIGYPSLASAAYDQGRFVAQAII
HGQAAHLLTEDIPTGIYTIPEISSVGRTEQELTAAKVPYEVGRASFKHLARAQIAGKD
IGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTM
AEAFRVAALNGLNRLF"
misc_feature complement(141069..142460)
/locus_tag="O3Y_00680"
/note="soluble pyridine nucleotide transhydrogenase;
Provisional; Region: PRK05249"
/db_xref="CDD:235373"
misc_feature complement(141690..141935)
/locus_tag="O3Y_00680"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
misc_feature complement(141093..141431)
/locus_tag="O3Y_00680"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:217252"
gene 142774..143415
/locus_tag="O3Y_00685"
/db_xref="GeneID:11913078"
CDS 142774..143415
/locus_tag="O3Y_00685"
/note="COG1309 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional repressor FabR"
/protein_id="YP_005332014.1"
/db_xref="GI:379740045"
/db_xref="GeneID:11913078"
/translation="MKSLGIRAQQKEKTRRSLIDAAFSQLSADRSFSNLSLREVAREA
GIAPTSFYRHFKDMDELGLTMVDEGGLLLRQLMRQARQRIVKEGSVIRTSVETFMEFI
ESSPNVFRLLLRERSGTSCEFRAAVVREIQHFAAELTEYLVATGMTREEAMTQAEASV
TLVFSSGAEALDLDRRERDELAERLIMQLRMLAKGAHWYRKERERHRLKGALE"
misc_feature 142780..143385
/locus_tag="O3Y_00685"
/note="DNA-binding transcriptional repressor FabR;
Provisional; Region: PRK11202"
/db_xref="CDD:183037"
misc_feature 142825..142956
/locus_tag="O3Y_00685"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 143455..143826
/locus_tag="O3Y_00690"
/db_xref="GeneID:11913079"
CDS 143455..143826
/locus_tag="O3Y_00690"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332015.1"
/db_xref="GI:379740046"
/db_xref="GeneID:11913079"
/translation="MSRENNVQSTRAERKTLILALVAGMCSDALLSWLTMSSVPFSLF
ALIALVLSAQMLYQEYLAHPVAEEVPLVGLACFFVGAFGHSAFIKAQYPQEGSNFFSI
VIVLLLIFWIGRKLGYIGKPR"
misc_feature 143476..143823
/locus_tag="O3Y_00690"
/note="Protein of unknown function (DUF1422); Region:
DUF1422; pfam07226"
/db_xref="CDD:148685"
gene complement(143863..144972)
/locus_tag="O3Y_00695"
/db_xref="GeneID:11913080"
CDS complement(143863..144972)
/locus_tag="O3Y_00695"
/EC_number="2.1.1.35"
/note="COG2265 SAM-dependent methyltransferases related to
tRNA (uracil-5-)-methyltransferase"
/codon_start=1
/transl_table=11
/product="tRNA (uracil-5-)-methyltransferase"
/protein_id="YP_005332016.1"
/db_xref="GI:379740047"
/db_xref="GeneID:11913080"
/translation="MATLDVNPELYQAQLADKIARLKAMFVDYSMPELEVFESPVANY
RMRAEFRIWHEGDDMYYIMFNQETREKYRVDQFPAASRLINDLMPLLMDAMKGSPILR
HKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMK
VVLDRDYVVENLQVNGQPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQESKGDLLELY
CGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEG
KREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYISCNPETLQEN
LQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK"
misc_feature complement(143869..144972)
/locus_tag="O3Y_00695"
/note="tRNA (uracil-5-)-methyltransferase; Validated;
Region: PRK05031"
/db_xref="CDD:235332"
misc_feature complement(<144163..144336)
/locus_tag="O3Y_00695"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(144172..144180,144253..144258,
144304..144324))
/locus_tag="O3Y_00695"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 145370..147205
/locus_tag="O3Y_00700"
/db_xref="GeneID:11913081"
CDS 145370..147205
/locus_tag="O3Y_00700"
/note="COG4206 Outer membrane cobalamin receptor protein"
/codon_start=1
/transl_table=11
/product="vitamin B12 receptor"
/protein_id="YP_005332017.1"
/db_xref="GI:379740048"
/db_xref="GeneID:11913081"
/translation="MQKSALAIALASLLTPISYLHANEAQPQETVVVTANRFEQKASS
TLADVEIITRQDIEQTQAKTLPELLRRLTGVQITQNGGRGQLASLFVRGTSSDQVLVL
VDGIRFARAAKGAVDFNQIPLTYVDRIEYVRGARASLYGSEAIGGVINIITKARSQQQ
GTTVSAGLGSLDYQELSIASGVAIGEKGQMNVALGTESDKGYNVRPVPGVNDGDRHGF
RSDNALLGYVHQFDESWSLFANARAYENIYQYDNSYGTRDYKEAEKDDLSFTIGTQYQ
SERWVSELQLTTQKQKSWDYTQSKGKYSDTSDNLEQRNIQWINRYLVNDVWTFAGGVD
WRDESYIDKTADKEFDRSNTAAFAVVAAEWQQWLLEASLRFDDNQEYGSQTTHNIALG
YQFIPEFGVKASYGSAFKAPNLYQQYDPSYGNVNLQPEDADSAELSFYGLFSGIKWSI
TGYDYKINNLIDYNSTTKNYQNVIGESNIKGVEFTAEFATGIVQHQLSVDLKDADDSK
GKTLQRRAEHMYKWNALVAFEQVDWSIGYQYVGKRPDLDYNTYPTQNITLDAYSLVDT
SVSYYVTDSTTISARIDNLLDKEYETANGYPAAERAYYLNIGYQF"
misc_feature 145370..147202
/locus_tag="O3Y_00700"
/note="TonB-dependent vitamin B12 receptor; Region:
TonB-B12; TIGR01779"
/db_xref="CDD:233572"
misc_feature 145514..147202
/locus_tag="O3Y_00700"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:238657"
misc_feature order(145514..145540,145568..145597,145634..145651,
145670..145693,145736..145768,145802..145828)
/locus_tag="O3Y_00700"
/note="N-terminal plug; other site"
/db_xref="CDD:238657"
misc_feature 146264..146266
/locus_tag="O3Y_00700"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:238657"
gene complement(147278..148993)
/locus_tag="O3Y_00705"
/db_xref="GeneID:11913082"
CDS complement(147278..148993)
/locus_tag="O3Y_00705"
/note="COG1404 Subtilisin-like serine proteases"
/codon_start=1
/transl_table=11
/product="alkaline serine exoprotease A precursor"
/protein_id="YP_005332018.1"
/db_xref="GI:379740049"
/db_xref="GeneID:11913082"
/translation="MNNFFSSKDEIVIGVLNMIVVSHDPTIFIHFLRKLIMFKKFLSL
CIVSTFSVAATSALAQPNQLVGKSSPQQLAPLMKAASGKGIKNQYIVVLKQPTTIMSN
DLQAFQQFTQRSVNALANKHALEIKNVFDSALSGFSAELTAEQLQALRADPNVDYIEQ
NQIITVNPIISASANAAQDNVTWGIDRIDQRDLPLNRSYNYNYDGSGVTAYVIDTGIA
FNHPEFGGRAKSGYDFIDNDNDASDCQGHGTHVAGTIGGAQYGVAKNVNLVGVRVLGC
DGSGSTEAIARGIDWVAQNASGPSVANLSLGGGISQAMDQAVARLVQRGVTAVIAAGN
DNKDACQVSPAREPSGITVGSTTNNDGRSNFSNWGNCVQIFAPGSDVTSASHKGGTTT
MSGTSMASPHVAGVAALYLQENKNLSPNQIKTLLSDRSTKGKVSDTQGTPNKLLYSLT
DNNTTPNPEPNPQPEPQPQPDSQLTNGKVVTGISGKQGELKKFYIDVPAGRRLSIETN
GGTGNLDLYVRLGIEPEPFAWDCASYRNGNNEVCTFPNTREGRHFITLYGTTEFNNVS
LVARY"
misc_feature complement(148499..148732)
/locus_tag="O3Y_00705"
/note="Peptidase inhibitor I9; Region: Inhibitor_I9;
pfam05922"
/db_xref="CDD:203351"
misc_feature complement(147698..148447)
/locus_tag="O3Y_00705"
/note="Peptidase S8 family domain in ProteinaseK-like
proteins; Region: Peptidases_S8_PCSK9_ProteinaseK_like;
cd04077"
/db_xref="CDD:173790"
misc_feature complement(order(148424..148429,148436..148438))
/locus_tag="O3Y_00705"
/note="calcium binding site 2 [ion binding]; other site"
/db_xref="CDD:173790"
misc_feature complement(order(147803..147805,147812..147814,
147992..147994,148073..148078,148253..148255,
148352..148354))
/locus_tag="O3Y_00705"
/note="active site"
/db_xref="CDD:173790"
misc_feature complement(order(147803..147805,148253..148255,
148352..148354))
/locus_tag="O3Y_00705"
/note="catalytic triad [active]"
/db_xref="CDD:173790"
misc_feature complement(order(147875..147877,147944..147946,
147950..147952))
/locus_tag="O3Y_00705"
/note="calcium binding site 1 [ion binding]; other site"
/db_xref="CDD:173790"
misc_feature complement(147320..147517)
/locus_tag="O3Y_00705"
/note="Bacterial pre-peptidase C-terminal domain; Region:
PPC; pfam04151"
/db_xref="CDD:112942"
gene 149278..150075
/locus_tag="O3Y_00710"
/db_xref="GeneID:11913083"
CDS 149278..150075
/locus_tag="O3Y_00710"
/EC_number="5.1.1.3"
/note="COG0796 Glutamate racemase"
/codon_start=1
/transl_table=11
/product="glutamate racemase"
/protein_id="YP_005332019.1"
/db_xref="GI:379740050"
/db_xref="GeneID:11913083"
/translation="MSSPSFPRVLIFDSGVGGLSVYREIEARLPQLNYIYLFDNAAYP
YGELTQETLIARVDTLVTRMVEQERIDLVVIACNTASTIVLPVLRAKLTIPVVGVVPA
IKPASLIASKAIGLIATPATVKRQYTQELIRDFSANKNVELLGSTRLVNMAEEKLRGK
PLDLEELASILQPLKNTIDVAVLGCTHFPLIKEEIQQVLGEQVQLIDSGLAIARRVQE
LLGIEQAVGAKQKHRIYASAPPWEESALNIKLEQLGFNPVQPFLHPI"
misc_feature 149281..149997
/locus_tag="O3Y_00710"
/note="glutamate racemase; Provisional; Region: PRK00865"
/db_xref="CDD:234851"
gene complement(150041..150499)
/locus_tag="O3Y_00715"
/db_xref="GeneID:11913084"
CDS complement(150041..150499)
/locus_tag="O3Y_00715"
/note="COG0724 RNA-binding proteins (RRM domain)"
/codon_start=1
/transl_table=11
/product="RNA-binding protein"
/protein_id="YP_005332020.1"
/db_xref="GI:379740051"
/db_xref="GeneID:11913084"
/translation="MKSDKSMLWIALLAVIGAGILSQLTLHSSFAFLIGVVATALICK
LSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTG
KRRGFGFVVIAASQAQTAIDALNEKEYMQRTLKVRIANDPKSDEEMAEQD"
misc_feature complement(<150071..>150313)
/locus_tag="O3Y_00715"
/note="RNA-binding proteins (RRM domain) [General function
prediction only]; Region: COG0724"
/db_xref="CDD:223796"
misc_feature complement(150080..150307)
/locus_tag="O3Y_00715"
/note="RNA recognition motif in Helicobacter pylori HP0827
protein and similar proteins; Region: RRM_HP0827_like;
cd12399"
/db_xref="CDD:240845"
gene 151053..152596
/locus_tag="O3Y_r13485"
/db_xref="GeneID:11913085"
rRNA 151053..152596
/locus_tag="O3Y_r13485"
/product="16S ribosomal RNA"
/db_xref="GeneID:11913085"
gene 152663..152738
/locus_tag="O3Y_t13283"
/db_xref="GeneID:11913086"
tRNA 152663..152738
/locus_tag="O3Y_t13283"
/product="tRNA-Glu"
/db_xref="GeneID:11913086"
gene 153024..155921
/locus_tag="O3Y_r13501"
/db_xref="GeneID:11913087"
rRNA 153024..155921
/locus_tag="O3Y_r13501"
/product="23S ribosomal RNA"
/db_xref="GeneID:11913087"
gene 156043..156158
/locus_tag="O3Y_r13467"
/db_xref="GeneID:11913088"
rRNA 156043..156158
/locus_tag="O3Y_r13467"
/product="5S ribosomal RNA"
/db_xref="GeneID:11913088"
gene 156206..156296
/locus_tag="O3Y_t13285"
/db_xref="GeneID:11913089"
tRNA 156206..156296
/locus_tag="O3Y_t13285"
/product="tRNA-Ser"
/db_xref="GeneID:11913089"
gene complement(156407..157303)
/locus_tag="O3Y_00720"
/db_xref="GeneID:11913090"
CDS complement(156407..157303)
/locus_tag="O3Y_00720"
/note="COG0583 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator IlvY"
/protein_id="YP_005332021.1"
/db_xref="GI:379740052"
/db_xref="GeneID:11913090"
/translation="MNIKTLQLFMHLCDCKNFSKTASAMHLSPSALSRQIQKLEQDLG
HTLFLRDNRSVELTPAAHQLLPVAARIIHDWRQFTTELNDDSQELRGEIKLFCSVTAS
YSHLPELLSSFRLKHPYIEFKLLTGDPAQAIDKILHDEADIAISAMPEQLPSRIEFAT
ISEIPLSVIAPLGISSFMDELQKEQPDWNEIPFIVPESGTARDRANTWFKQMKIKPNI
YAQIAGHEAIVSLVALGCGVGIAPDVVINNSPVRDKIQRLSVTPIKPFMLGVCCKRSQ
LDNPLVQALWRVVSAKKSVVDK"
misc_feature complement(157118..157297)
/locus_tag="O3Y_00720"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(156428..157231)
/locus_tag="O3Y_00720"
/note="DNA-binding transcriptional regulator IlvY;
Provisional; Region: PRK11716"
/db_xref="CDD:236961"
misc_feature complement(156440..157030)
/locus_tag="O3Y_00720"
/note="The C-terminal substrate binding of LysR-type
transcriptional regulator IlvY, which activates the
expression of ilvC gene that encoding acetohydroxy acid
isomeroreductase for the biosynthesis of branched amino
acids; contains the type 2 periplasmic bindin; Region:
PBP2_IlvY; cd08430"
/db_xref="CDD:176121"
misc_feature complement(order(156602..156607,156611..156616,
156632..156649,156926..156946,156950..156952,
156962..156964,156971..156976,156980..156985))
/locus_tag="O3Y_00720"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176121"
gene 157441..158925
/locus_tag="O3Y_00725"
/db_xref="GeneID:11913091"
CDS 157441..158925
/locus_tag="O3Y_00725"
/EC_number="1.1.1.86"
/note="COG0059 Ketol-acid reductoisomerase"
/codon_start=1
/transl_table=11
/product="ketol-acid reductoisomerase"
/protein_id="YP_005332022.1"
/db_xref="GI:379740053"
/db_xref="GeneID:11913091"
/translation="MANYFNTLNLREQLDQLGRCRFMAREEFATEADYLKGKKVVIVG
CGAQGLNQGLNMRDSGLDVSYALRQAAIDEQRQSFKNAKNNGFNVGSYEQLIPTADLV
INLTPDKQHTSVVNAVMPLMKQGAALGYSHGFNIVEEGMQIRKDITVVMVAPKCPGTE
VREEYKRGFGVPTLIAVHPENDPQGEGWEIAKAWAAATGGHRAGCLASSFVAEVKSDL
MGEQTILCGMLQAGSIVCYEKMVADGIDPGYAGKLLQFGWETITEALKFGGITHMMDR
LSNPAKIKAFELSEELKDLMRPLYNKHMDDIISGHFSSTMMADWANDDKDLFGWRAET
AETAFENYPTTDVKIAEQEYFDNGILMIAMVRAGVELAFEAMTASGIIDESAYYESLH
ELPLIANTVARKRLYEMNVVISDTAEYGNYLFANVAVPLLREKFMPKVGTDVIGKGLG
VVSNQVDNATLIEVNSIIRNHPVEYIGEELRGYMKDMKRIAVGD"
misc_feature 157444..158913
/locus_tag="O3Y_00725"
/note="ketol-acid reductoisomerase; Validated; Region:
PRK05225"
/db_xref="CDD:235368"
misc_feature 157540..158052
/locus_tag="O3Y_00725"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvN; pfam07991"
/db_xref="CDD:116601"
misc_feature 158068..158460
/locus_tag="O3Y_00725"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvC; pfam01450"
/db_xref="CDD:216510"
misc_feature 158512..158904
/locus_tag="O3Y_00725"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvC; pfam01450"
/db_xref="CDD:216510"
gene complement(159052..159303)
/locus_tag="O3Y_00730"
/db_xref="GeneID:11913092"
CDS complement(159052..159303)
/locus_tag="O3Y_00730"
/note="COG2960 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332023.1"
/db_xref="GI:379740054"
/db_xref="GeneID:11913092"
/translation="MFDAKKLEQIAKQIHEAMPQPVKELGADVEQKVRQVIQGQLNKL
DVVSREEFDVQTQVLLRTRQKLTELEQKMAELEAKLADK"
misc_feature complement(159055..159303)
/locus_tag="O3Y_00730"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2960"
/db_xref="CDD:225508"
gene complement(159419..162529)
/locus_tag="O3Y_00735"
/db_xref="GeneID:11913093"
CDS complement(159419..162529)
/locus_tag="O3Y_00735"
/note="COG0841 Cation/multidrug efflux pump"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332024.1"
/db_xref="GI:379740055"
/db_xref="GeneID:11913093"
/translation="MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTV
ITVSTGYYGASADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPN
AALSDVLAKTNSVRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERV
VNPQLYAVNGVSSIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQ
AIGEFVLYNGSADTQVSTVEDLESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANG
REAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVI
KTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV
LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIAL
MGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDR
MTARYERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPS
NANLDYLANTMDDVNKILSDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQATV
TNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVK
ANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNG
RSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNS
ATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLAL
AIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLIT
KHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGA
AQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHKPLPVFVEDKDLEKLARIDEAK
AAHRQL"
misc_feature complement(159500..162529)
/locus_tag="O3Y_00735"
/note="multidrug efflux protein; Reviewed; Region:
PRK09579"
/db_xref="CDD:169983"
gene complement(162541..163647)
/locus_tag="O3Y_00740"
/db_xref="GeneID:11913094"
CDS complement(162541..163647)
/locus_tag="O3Y_00740"
/note="COG0845 Membrane-fusion protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332025.1"
/db_xref="GI:379740056"
/db_xref="GeneID:11913094"
/translation="MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPV
TVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS
AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKAT
IARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQ
EVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILP
KLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPG
DVVVTTGQVRLSNGAKVRIVESDATTPPAETPML"
misc_feature complement(162586..163518)
/locus_tag="O3Y_00740"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:233547"
misc_feature complement(<163144..>163389)
/locus_tag="O3Y_00740"
/note="ligand binding domain of Tar- and Tsr-related
chemoreceptors; Region: Tar_Tsr_LBD; cl00144"
/db_xref="CDD:241635"
misc_feature complement(162850..163155)
/locus_tag="O3Y_00740"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:222128"
gene complement(163666..164247)
/locus_tag="O3Y_00745"
/db_xref="GeneID:11913095"
CDS complement(163666..164247)
/locus_tag="O3Y_00745"
/note="COG1309 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_005332026.1"
/db_xref="GI:379740057"
/db_xref="GeneID:11913095"
/translation="MSEIVYGDKQLQILIAAEKLIAEQGFQGLSMHKVAKAANMATGT
IYRYFRDKDHLLIEVRLHVSQKIAEAVQANLRDDMSLQERFRTMWLNIWTLAGSCRDI
ISNRVQYESLPTTTCCNVRELEQKMFAKVELLFDQGKQQGIFKPLDNHLLSALSFETT
VTLARQYALGFYQLDDSTLDAMIQASWDAITQH"
misc_feature complement(163669..164226)
/locus_tag="O3Y_00745"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:224228"
misc_feature complement(164071..164211)
/locus_tag="O3Y_00745"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 164408..166423
/locus_tag="O3Y_00750"
/db_xref="GeneID:11913096"
CDS 164408..166423
/locus_tag="O3Y_00750"
/note="COG0210 Superfamily I DNA and RNA helicases"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase Rep"
/protein_id="YP_005332027.1"
/db_xref="GI:379740058"
/db_xref="GeneID:11913096"
/translation="MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCG
YKARNIAAVTFTNKAAREMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLK
AGFSLFDDQDQLALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQ
QLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQD
TNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQN
YRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAH
KFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRV
LVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGL
ENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSD
LYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLE
FPYVYLIGAEEGILPHQTSIDEENVEEERRLMYVGITRAQRELTFIVCKERRQFGELI
KPSQSRFLDELPQDDIEWEVKKKPVTQEERMAKGQAHIANLRAMFKK"
misc_feature 164411..166405
/locus_tag="O3Y_00750"
/note="ATP-dependent DNA helicase Rep; Region: rep;
TIGR01074"
/db_xref="CDD:130146"
misc_feature 164432..164671
/locus_tag="O3Y_00750"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:222005"
misc_feature <166076..166243
/locus_tag="O3Y_00750"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:222209"
gene complement(166490..166897)
/locus_tag="O3Y_00755"
/db_xref="GeneID:11913097"
CDS complement(166490..166897)
/locus_tag="O3Y_00755"
/note="COG3245 Cytochrome c5"
/codon_start=1
/transl_table=11
/product="cytochrome c5"
/protein_id="YP_005332028.1"
/db_xref="GI:379740059"
/db_xref="GeneID:11913097"
/translation="MDMSRSLLSVLFAALTFSTAAFALTEADKNAIAERIKPVGDVYL
AGSEPVQAAPTGPRDGATVYGTFCTACHSAGISGAPKTGNAADWGPRIAQGKDVLKNH
ALNGFNAMPPKGTCMDCSDDEIVAAIEHMIAGL"
misc_feature complement(166493..166810)
/locus_tag="O3Y_00755"
/note="Cytochrome c5 [Energy production and conversion];
Region: CycB; COG3245"
/db_xref="CDD:225784"
gene 167187..167263
/locus_tag="O3Y_t13287"
/db_xref="GeneID:11913098"
tRNA 167187..167263
/locus_tag="O3Y_t13287"
/product="tRNA-Arg"
/db_xref="GeneID:11913098"
gene 167299..167374
/locus_tag="O3Y_t13289"
/db_xref="GeneID:11913099"
tRNA 167299..167374
/locus_tag="O3Y_t13289"
/product="tRNA-His"
/db_xref="GeneID:11913099"
gene 167436..167512
/locus_tag="O3Y_t13291"
/db_xref="GeneID:11913100"
tRNA 167436..167512
/locus_tag="O3Y_t13291"
/product="tRNA-Pro"
/db_xref="GeneID:11913100"
gene 167581..167656
/locus_tag="O3Y_t13293"
/db_xref="GeneID:11913101"
tRNA 167581..167656
/locus_tag="O3Y_t13293"
/product="tRNA-His"
/db_xref="GeneID:11913101"
gene 167718..167794
/locus_tag="O3Y_t13295"
/db_xref="GeneID:11913102"
tRNA 167718..167794
/locus_tag="O3Y_t13295"
/product="tRNA-Pro"
/db_xref="GeneID:11913102"
gene 168029..168238
/locus_tag="O3Y_00760"
/db_xref="GeneID:11913103"
CDS 168029..168238
/locus_tag="O3Y_00760"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332029.1"
/db_xref="GI:379740060"
/db_xref="GeneID:11913103"
/translation="MNYFYDLSELNWEFFGFYDWIDAYHPEFYFVVCTQNLAIVSYLL
IVPFLRGEKLCVGCFISCYESRRLQ"
gene 168530..170245
/locus_tag="O3Y_00765"
/db_xref="GeneID:11913104"
CDS 168530..170245
/locus_tag="O3Y_00765"
/note="COG1123 ATPase components of various ABC-type
transport systems, contain duplicated ATPase"
/codon_start=1
/transl_table=11
/product="cell division transporter ATP-binding protein
FtsE"
/protein_id="YP_005332030.1"
/db_xref="GI:379740061"
/db_xref="GeneID:11913104"
/translation="MSLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGA
GKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSL
NPLFTVEHQLTETIHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQ
RVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVS
NVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEA
KELKPLDVKSHWLGQSQDHRKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSF
AVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQ
MQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLK
YPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTM
LFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEFTGLRE
STTAA"
misc_feature 168530..170206
/locus_tag="O3Y_00765"
/note="ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only]; Region: COG1123"
/db_xref="CDD:224048"
misc_feature 168536..169237
/locus_tag="O3Y_00765"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 168647..168670
/locus_tag="O3Y_00765"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(168656..168661,168665..168673,168815..168817,
169061..169066,169163..169165)
/locus_tag="O3Y_00765"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 168806..168817
/locus_tag="O3Y_00765"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 168989..169018
/locus_tag="O3Y_00765"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 169049..169066
/locus_tag="O3Y_00765"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 169073..169084
/locus_tag="O3Y_00765"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 169151..169171
/locus_tag="O3Y_00765"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 169226..>169336
/locus_tag="O3Y_00765"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:244611"
misc_feature 169433..170140
/locus_tag="O3Y_00765"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 169565..169588
/locus_tag="O3Y_00765"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(169574..169579,169583..169591,169721..169723,
169964..169969,170066..170068)
/locus_tag="O3Y_00765"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 169712..169723
/locus_tag="O3Y_00765"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 169892..169921
/locus_tag="O3Y_00765"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 169952..169969
/locus_tag="O3Y_00765"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 169976..169987
/locus_tag="O3Y_00765"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 170054..170074
/locus_tag="O3Y_00765"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 170132..>170212
/locus_tag="O3Y_00765"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:244611"
gene 170337..171893
/locus_tag="O3Y_00770"
/db_xref="GeneID:11913105"
CDS 170337..171893
/locus_tag="O3Y_00770"
/note="COG0747 ABC-type dipeptide transport system,
periplasmic component"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter substrate-binding
protein"
/protein_id="YP_005332031.1"
/db_xref="GI:379740062"
/db_xref="GeneID:11913105"
/translation="MKTMKNKLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLS
GGTLQLSHMVFDPLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTAD
DVVWTFNRLKESADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKF
YTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKG
NVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITF
QMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR
FDLNKAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPK
AQYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDK
LVNAANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDF
PYFGDLVVKE"
misc_feature 170337..171824
/locus_tag="O3Y_00770"
/note="ABC-type dipeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
DdpA; COG0747"
/db_xref="CDD:223818"
misc_feature 170409..171839
/locus_tag="O3Y_00770"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_2; cd08498"
/db_xref="CDD:173863"
gene 172048..173025
/locus_tag="O3Y_00775"
/db_xref="GeneID:11913106"
CDS 172048..173025
/locus_tag="O3Y_00775"
/note="COG0601 ABC-type dipeptide/oligopeptide/nickel
transport systems, permease components"
/codon_start=1
/transl_table=11
/product="peptide/nickel transport system permease
protein"
/protein_id="YP_005332032.1"
/db_xref="GI:379740063"
/db_xref="GeneID:11913106"
/translation="MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSE
AERQALRDELGLNDPFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVF
GATLIIIVFSIPLGVYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGW
LPSYGRGETVNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSE
YIKFAQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFL
FLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTVNLTGKGA"
misc_feature 172048..172995
/locus_tag="O3Y_00775"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:223674"
misc_feature 172327..172953
/locus_tag="O3Y_00775"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(172375..172380,172387..172392,172405..172407,
172438..172449,172453..172482,172489..172494,
172498..172500,172639..172644,172648..172650,
172654..172656,172663..172668,172672..172674,
172684..172689,172696..172698,172747..172749,
172789..172794,172801..172803,172822..172833,
172840..172845,172870..172875,172903..172908,
172915..172920,172924..172929,172936..172941,
172948..172953)
/locus_tag="O3Y_00775"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(172456..172500,172822..172839)
/locus_tag="O3Y_00775"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(172498..172500,172624..172626,172840..172842,
172864..172866,172873..172875,172903..172905)
/locus_tag="O3Y_00775"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(172699..172737,172753..172758,172768..172770)
/locus_tag="O3Y_00775"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 173028..173966
/locus_tag="O3Y_00780"
/db_xref="GeneID:11913107"
CDS 173028..173966
/locus_tag="O3Y_00780"
/note="COG1173 ABC-type dipeptide/oligopeptide/nickel
transport systems, permease components"
/codon_start=1
/transl_table=11
/product="peptide/nickel transport system permease
protein"
/protein_id="YP_005332033.1"
/db_xref="GI:379740064"
/db_xref="GeneID:11913107"
/translation="MSAVSIAPSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAI
SAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSL
TIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKAS
FGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMF
RHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGA
WWITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYKG"
misc_feature 173043..173951
/locus_tag="O3Y_00780"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:224094"
misc_feature 173322..173858
/locus_tag="O3Y_00780"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(173367..173372,173379..173384,173397..173399,
173427..173438,173442..173471,173478..173483,
173487..173489,173568..173573,173577..173579,
173583..173585,173592..173597,173601..173603,
173613..173618,173625..173627,173676..173678,
173718..173723,173730..173732,173751..173762,
173769..173774,173820..173825,173853..173858)
/locus_tag="O3Y_00780"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(173445..173489,173751..173768)
/locus_tag="O3Y_00780"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(173487..173489,173553..173555,173769..173771,
173814..173816,173823..173825,173853..173855)
/locus_tag="O3Y_00780"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(173628..173666,173682..173687,173697..173699)
/locus_tag="O3Y_00780"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 174141..175088
/locus_tag="O3Y_00785"
/db_xref="GeneID:11913108"
CDS 174141..175088
/locus_tag="O3Y_00785"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332034.1"
/db_xref="GI:379740065"
/db_xref="GeneID:11913108"
/translation="MPKWILCCNLSVALLLFAPIASAESDYLCDAQQAAVNQLPVLDA
ACPIGDGLWGKKPKRGDSLFWIQCGMLSKPMPLATVKTLYEHISTDIWVKPEPKGARC
LIGPYSDFALASKELKKVKKLATFEQAFIRQVVKTSAQQPVMKAKPTTAAVAPAANTA
VSEASAPKPASKPKSEEKSAPTVVPAAVPTKPVAKLISTPKPSGNSGFVLRQQVKVGS
QTFALPYSDNPKVQFYMEHDQAWNRLDYDAAQIVCRDLGMRLATEQEWSALLQSKQMQ
QYQWPVQLPYWGEGRKGMFTTGKVNVLKGSSLLNVVCVK"
gene complement(175341..176930)
/locus_tag="O3Y_00790"
/db_xref="GeneID:11913109"
CDS complement(175341..176930)
/locus_tag="O3Y_00790"
/note="COG2131 Deoxycytidylate deaminase"
/codon_start=1
/transl_table=11
/product="deoxycytidylate deaminase-likeprotein"
/protein_id="YP_005332035.1"
/db_xref="GI:379740066"
/db_xref="GeneID:11913109"
/translation="MNKSSAKKILSTVPSPTKSNSSSSNDLQKRILERRSRELVIGLC
GAIGSGVKALKESLVSSLETYGYEVVDIRISKIISEKTQTSLDGLSAFKRYNRLQDLG
NSLRETHKSSILAACAIEEIALERTLICQNEIDETSEENDNEPSLIKTTKKIAYIIDQ
LKHPDEIKFLRSVYPRNFYLIGLIRTEGERRLNLEEEKISPSEIDTLMRRDRKDVSHG
QQVEKSLFNADYFIHNIHNQKQMLDKSVERFIKLVHGINGISPTIDEIGMHAAYSAAL
RSACLSRQVGAAILDNQGNIISTGCNDVPSFGGGLYNSNSLADFRCVHTGRCSNDKHK
DILKEEITDILKKSITNTLELKEIVNQITSETKIKTLIEYSRAVHAEMDSLIALARNN
KETSVDKTLYVTTYPCHNCARHIVAAGIKKVVYVEPYEKSLAMKLHDDSISDNADAKN
KVCFLPFEGVSSRRYEVFFQMHGDRKDDKTGKVLNINIQDSYHADSEFLDNYAEMEAK
IAQSVNALLNVPSSEEESIQD"
misc_feature complement(176169..>176489)
/locus_tag="O3Y_00790"
/note="hypothetical protein; Provisional; Region:
PRK01184"
/db_xref="CDD:234914"
misc_feature complement(175635..176141)
/locus_tag="O3Y_00790"
/note="Deoxycytidylate deaminase domain. Deoxycytidylate
deaminase catalyzes the deamination of dCMP to dUMP,
providing the nucleotide substrate for thymidylate
synthase. The enzyme binds Zn++, which is required for
catalytic activity. The activity of the...; Region:
deoxycytidylate_deaminase; cd01286"
/db_xref="CDD:238613"
misc_feature complement(order(175698..175700,175707..175712,
175788..175790,175794..175796,176004..176006))
/locus_tag="O3Y_00790"
/note="catalytic motif [active]"
/db_xref="CDD:238613"
misc_feature complement(order(175698..175700,175707..175709,
175788..175790,175794..175796))
/locus_tag="O3Y_00790"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:238613"
gene complement(177006..177239)
/locus_tag="O3Y_00795"
/db_xref="GeneID:11913110"
CDS complement(177006..177239)
/locus_tag="O3Y_00795"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332036.1"
/db_xref="GI:379740067"
/db_xref="GeneID:11913110"
/translation="MRTLLFANHTLVNGYFGGKQMITSIHEYRNASNSDKNRLSHNSK
SDTSGNVVLFSQKDAKKEKARANLLRAAQKIHW"
gene complement(177448..177756)
/locus_tag="O3Y_00800"
/db_xref="GeneID:11913111"
CDS complement(177448..177756)
/locus_tag="O3Y_00800"
/note="COG1396 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332037.1"
/db_xref="GI:379740068"
/db_xref="GeneID:11913111"
/translation="MSFQNPIPLRLKEARKKAKLSQKALGVRIGMDESSASPRMNQYE
KGKHTPDVQTLKLIADELGVPLNYFFCEDDESAELACLIHRMSPEEKKNLLKDLISKK
"
misc_feature complement(<177523..177696)
/locus_tag="O3Y_00800"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:224314"
misc_feature complement(177550..>177696)
/locus_tag="O3Y_00800"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature complement(order(177619..177624,177634..177636,
177655..177657,177688..177693))
/locus_tag="O3Y_00800"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
misc_feature complement(177625..177627)
/locus_tag="O3Y_00800"
/note="salt bridge; other site"
/db_xref="CDD:238045"
gene 177871..178422
/locus_tag="O3Y_00805"
/db_xref="GeneID:11913112"
CDS 177871..178422
/locus_tag="O3Y_00805"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332038.1"
/db_xref="GI:379740069"
/db_xref="GeneID:11913112"
/translation="MKISAEMYKLLIERTLDGFSVIELRDEFIVIKDSLIDPDEAYKK
VYRQILRFIKKGWLNGEGSGRQKRYFQTDTFKALHAEPKSENVDIEIVLNQDYSVLVS
ERNQYKGELEIVLGEIDEYQSLNIRFPELEPKLITLLDEAKERSACLLGKVNGLTNVL
KVLSGQKIVHQKFKTKALLFERT"
gene 178909..179157
/locus_tag="O3Y_00810"
/db_xref="GeneID:11913113"
CDS 178909..179157
/locus_tag="O3Y_00810"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332039.1"
/db_xref="GI:379740070"
/db_xref="GeneID:11913113"
/translation="MLQRSQKRLLVRLYHKLQPPGRLALKWKAERLKRCRALNTVKKR
KLSLLLFYLNQAKIGRKKYMSRKDLLTDIADTLKSMVQ"
gene 179336..180403
/locus_tag="O3Y_00815"
/db_xref="GeneID:11913114"
CDS 179336..180403
/locus_tag="O3Y_00815"
/note="COG3621 Patatin"
/codon_start=1
/transl_table=11
/product="patatin-likeprotein"
/protein_id="YP_005332040.1"
/db_xref="GI:379740071"
/db_xref="GeneID:11913114"
/translation="MPNPPEYEHLKNQVRILSLNGGGARGLFTISLLAEIERIIEEKQ
GINGFKVGDYFDLITGTSIGGILALGLAYGKSARELEDVFRKQAGYIFPEQKYPRFFP
VFRRRYRLARGPLYDSKPLAKTIASMVGEESTFNDLKCRVLIPTVNLSTGKPQFFKTP
HNPEFHRDGRIKLIDAALATSAAPTYFAPHYCVDLDSYFADGGLVANNPSFIGLHEVF
RDMATDFPEAKVSDVKILNVGTLGEEYSLSPSSLAGKSGYLGLWGMGERLVLSAMAAN
QELHKAMLLREFATHDAIGNFVRLDNNIPHEAASDITLDNASASSLSNLASRGRQLAT
EEFTKNKALADFFKVPARKFK"
misc_feature 179351..180400
/locus_tag="O3Y_00815"
/note="Patatin [General function prediction only]; Region:
COG3621"
/db_xref="CDD:226148"
misc_feature 179381..180253
/locus_tag="O3Y_00815"
/note="Patatin-like phospholipase; includes PNPLA8,
PNPLA9, and Pat17; Region: Pat17_PNPLA8_PNPLA9_like;
cd07199"
/db_xref="CDD:132838"
misc_feature order(179399..179404,179408..179410,179519..179521,
179936..179938)
/locus_tag="O3Y_00815"
/note="active site"
/db_xref="CDD:132838"
misc_feature 179513..179527
/locus_tag="O3Y_00815"
/note="nucleophile elbow; other site"
/db_xref="CDD:132838"
gene 180423..181727
/locus_tag="O3Y_00820"
/db_xref="GeneID:11913115"
CDS 180423..181727
/locus_tag="O3Y_00820"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332041.1"
/db_xref="GI:379740072"
/db_xref="GeneID:11913115"
/translation="MTWNFHQYYTNRNDGLMGKLVLTDEEKNNLKALRKIIRLRTRDV
FEEAKGIAKAVKKSALTFEIIQEKVSTTQIKHLSDSEQREVAKLIYEMDDDARDEFLG
LTPRFWTQGSFQYDTLNRPFQPGQEMDIDDGTYMPMPIFESEPKIGHSLLILLVDASL
KSLVAENHGWKFEAKQTCGRIKIEAEKTHIDVPMYAIPKDEFQKKQIALEANRSFVKG
AIFESYVADSITDDSETYELDSENVNLALREGDRKWINSDPKIVEDWFNDSCIRIGKH
LRKVCRFMKAWRDAQWDVGGPSSISLMAATVNILDSVAHDASDLGETMKIIAKHLPSE
FARGVESPDSTDEKPLFPPSYKHGPREMDIMSKLERLPEILSSAESADSKSEALKKIN
MAFGNRVTNSELIVLAKALPAFAQEPSSASKPEKISSTMVSG"
gene 181730..183484
/locus_tag="O3Y_00825"
/db_xref="GeneID:11913116"
CDS 181730..183484
/locus_tag="O3Y_00825"
/note="COG0476 Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332042.1"
/db_xref="GI:379740073"
/db_xref="GeneID:11913116"
/translation="MKQELHHTLLGCGFRYTPAKQMPKGILLDTKSRRKGYYVKEYST
KGGVFVIALVLWNDPHIQLPFAYILQQPEQYKGRLLPHINFGFCLCYVTQMEADWNSN
DLKSTYQDVDEQIQLTLDNSVASVESGTSNDVELEGEFSAYWQSEEELYLLAKPSRKA
QLKAHLVEAELSSGSIRREYVAACSEQSEELVKWLNQRKFDESSLQEVSITTHCISVK
PNRLAGVNWPPSCLREVLSWLKLVDYSAHARTVTLLMAKRTKRHILLFDVEGQDELAV
YLELNLDVIGKRYFGRNAARKRNINNEAALLGGKFVSANFKRLGVTRADRDTLLSRNQ
SRPDVGNLSQKRIALIGCGTIGGYLAELLLRSGAGCGENYFHLYDNDSFKPHNFARHS
LTAHNFGLAKSIALANSLKEAVHIAQSIKGIDRQFPIQADVLSKYDIVIDATGRPPVS
KRLAAVARTLIADIRPVLIHAFNDGNGRASKVLVDDGRCCYGCMMADPAVYRNNIDLR
FEGIDLAKEKHISCGSTYTPYDAAVSHITAALAQEAVLNTLEHTLPWNYSEHMLDGSR
SKKPRTLKRFSGCNICDE"
misc_feature 181763..182185
/locus_tag="O3Y_00825"
/note="Prokaryotic E2 family B; Region: Prok-E2_B;
pfam14461"
/db_xref="CDD:222765"
misc_feature 182765..183181
/locus_tag="O3Y_00825"
/note="Superfamily of activating enzymes (E1) of the
ubiquitin-like proteins. This family includes classical
ubiquitin-activating enzymes E1, ubiquitin-like (ubl)
activating enzymes and other mechanistic homologes, like
MoeB, Thif1 and others. The common...; Region:
E1_enzyme_family; cd01483"
/db_xref="CDD:238760"
misc_feature order(182780..182782,182786..182788,182792..182794,
182864..182866,182870..182872,182897..182899,
182933..182935,183056..183058,183074..183076)
/locus_tag="O3Y_00825"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238760"
misc_feature order(182792..182794,183077..183079,183140..183145,
183161..183163)
/locus_tag="O3Y_00825"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:238760"
gene 183477..183944
/locus_tag="O3Y_00830"
/db_xref="GeneID:11913117"
CDS 183477..183944
/locus_tag="O3Y_00830"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332043.1"
/db_xref="GI:379740074"
/db_xref="GeneID:11913117"
/translation="MSDVELVFKDESDCLVVIMGHVVTRLLSYRQLHHLTPESAGVLI
GERRGQHLVVCDISEPGSGDIRQRCRVDRRGVHHQSRVNEAFERSAGTHLYLGEWHTH
PEDRPFPSATDRHSWRRNIVSDESMLLLIVGRKDFWLGKKERELITVFKKIES"
misc_feature 183537..183929
/locus_tag="O3Y_00830"
/note="integrative and conjugative element protein, VC0181
family; Region: ICE_VC0181; TIGR02256"
/db_xref="CDD:131309"
gene complement(183955..184386)
/locus_tag="O3Y_00835"
/db_xref="GeneID:11913118"
CDS complement(183955..184386)
/locus_tag="O3Y_00835"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332044.1"
/db_xref="GI:379740075"
/db_xref="GeneID:11913118"
/translation="MSKSQITKVELEQALGRILSGKTHRVDPARKISVKAVEEEAGLG
DGSAYYYKDIVQKIKESAIRNSPKIRNQNAYEDKISSLRDRLNKEIKLKEKYREQVED
LKEQLSSMASQHNQLTLMIQQYQYKISEFESDIEQLPKYSE"
gene complement(184358..186469)
/locus_tag="O3Y_00840"
/db_xref="GeneID:11913119"
CDS complement(184358..186469)
/locus_tag="O3Y_00840"
/codon_start=1
/transl_table=11
/product="phage integrase"
/protein_id="YP_005332045.1"
/db_xref="GI:379740076"
/db_xref="GeneID:11913119"
/translation="MTPLFELPKNILKENLSEYKNIVQLYSDGKLKKLDDVVVTKNFD
GSPNSHFGDEEWDFRAYLDARIVYKKRIVFSKIVSDDLAREMKLICFCWLYIAGHHRK
GAVIKPSTLIARFSKLSILYKFIDSKGFQSINSLSSEIVFSEFCEYLKGQNYSSGQVE
GIYNALMHVKKAARYLPIQFEIPQGRTQCKFGREITGRLYEGKNQFYAIPTRLMEKIY
RYCFDVVETYHPYKEEIHELLYDMRQNYEEGKRRVDDKIQSGIWQWISEESNEYRVEV
NKHQPASYSSIIDAHIKDTHLESLLPKSALRIQGTIIEIQTICFIVCGALTGMRRSEL
FCLHSNSFKEKEMYGKKYYTLQSEQHKFSQGRGKMAEWVTTKFTQKAIELAEAISRYM
RIQLLEDDDPMSVHNSSCLWLGQGRKSQKPIIRQDNNMRTHFLKICEKAGALITEDDL
DEFRVINQNREPNNADERLKVGNVWPLTTHQLRRTFAVFSKRHNLCHDIAIKEQFKHL
DLPTTEWYGEGGLASKIKALQIDTELQSFLNDVIQESTTQKIHEWYKGCDSGQLMGHM
AGSINKNRISLHKKYKSWDAINEHVKAGRLTLVGTLHSYCMAGYECQMHKVSSPANCM
SCENQLIDKEKAENWDKRYQWVCKQVTDMEAIGSLTSSMYSHFITQIRAAEKVLHKFQ
IPFTRFEIGNDRYEQIPNYEG"
gene complement(186479..188167)
/locus_tag="O3Y_00845"
/db_xref="GeneID:11913120"
CDS complement(186479..188167)
/locus_tag="O3Y_00845"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332046.1"
/db_xref="GI:379740077"
/db_xref="GeneID:11913120"
/translation="MTYTPPKLTIKLRTGIKQTFTYDFTRFFYKGVAFKRDLQRAEPA
HRDADVLRWYRIFTETNEYSDLTKQSYLRDFAKYVRFCDTKRLNPESSAAVESWERHL
IEQVRISSMNVNSARKMISCSKKCLEMLGNPSSEWFSPYGLFRSEPNPTQGYSDRELS
SLIKIINSFFRQVSKQIMENPSIHLNASTNKRTATFTYNNHTHEIASPITKCFSAAYF
MLSYYTWGNTTVLLNMTKPKEKIFDGGKWFEQSVLKPRANKYVSISIGDNGTFHVPKI
ALRFFEQLLQLSSLISSDPHLLWQTKRDHIAPLEQGHIQTFSKWLYETFDLKSDDGEP
LRPMASKFRASGSCRYLAKTGNTTETALLLGNTPYTLSKHYSSGNQVENQKQLLAATH
TIEGAARCSDINSAKEFAKKELGVEVLPYEEFLAKYADKHGEKTIIGTGCKNVYSSQA
DKYRRRNHFSPKDFNVDHLACSDIHNCFDCENQVIIESVEDIWCLLSYRESIIDSKVH
HLNEQHFNKNYSDLLNSINRIVFTIHPKVKRLAEKKLQNEGRHPLWPEGINIDF"
gene complement(188164..189378)
/locus_tag="O3Y_00850"
/db_xref="GeneID:11913121"
CDS complement(188164..189378)
/locus_tag="O3Y_00850"
/note="COG0582 Integrase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332047.1"
/db_xref="GI:379740078"
/db_xref="GeneID:11913121"
/translation="MVTVVNSNNFDVPRIYPPSSKSTSIHLTGFPTFYSKDHEYLLPV
NLWFNYLVNIRKAVDITASVRALKRYWQFLETNNYSWDNFPANDYLKPTYRFRNDDLL
KAARSGEIAFSTASMYILHVISTTIKFYEWAAHERFITFTEENKPFNYQIVHIANSGM
MSHNNPRFTVRSTDLRIRKPARNEQQKLNPLSQQELLFFADCLKECSDEFIIHQLLQI
QSGLRVEEACTFPFSIVEMPNPHIHRYEVEIGIHNGVHTKFNKTRKVEIPNQLMRKMY
DYSVSERRLKREKKTDGVNKTLLLNNLGNPLCSNNIQQHFRRLRHHIQNKHNIVFSHR
THDLRATYGTYRLDSLLDHLPVGDALALIMGWMGHKDDKTTWKYLRYLRKEKANQNAI
VMLDQILEEAML"
misc_feature complement(188239..188787)
/locus_tag="O3Y_00850"
/note="DNA breaking-rejoining enzymes,
intergrase/recombinases, C-terminal catalytic domain. The
tyrosine recombinase/integrase family share the same
catalytic domain containing six conserved active site
residues. The best-studied members of this diverse
family...; Region: INT_REC_C; cd01182"
/db_xref="CDD:29503"
misc_feature complement(order(188245..188247,188371..188376,
188605..188607,188707..188712))
/locus_tag="O3Y_00850"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29503"
misc_feature complement(order(188245..188247,188272..188274,
188362..188364,188371..188373,188605..188607,
188710..188712))
/locus_tag="O3Y_00850"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29503"
misc_feature complement(order(188245..188247,188272..188274,
188362..188364,188371..188373,188710..188712))
/locus_tag="O3Y_00850"
/note="active site"
/db_xref="CDD:29503"
misc_feature complement(order(188245..188247,188362..188364,
188710..188712))
/locus_tag="O3Y_00850"
/note="catalytic residues [active]"
/db_xref="CDD:29503"
gene complement(189467..190819)
/locus_tag="O3Y_00855"
/db_xref="GeneID:11913122"
CDS complement(189467..190819)
/locus_tag="O3Y_00855"
/EC_number="1.8.1.7"
/note="COG1249 Pyruvate/2-oxoglutarate dehydrogenase
complex, dihydrolipoamide dehydrogenase (E3) component,
and related enzymes"
/codon_start=1
/transl_table=11
/product="glutathione reductase"
/protein_id="YP_005332048.1"
/db_xref="GI:379740079"
/db_xref="GeneID:11913122"
/translation="MATHFDYLCIGGGSGGIASANRAAMYGAKVALIEAKDLGGTCVN
VGCVPKKVMWHGAQIAEAMHLYAEDYGFDVDVKNFNWAKLVESRQAYIGRIHQSYDRV
LGNNKVHVIKGFAKFVDAKTVEVNGELYTADHILIAVGGRPSIPNIPGAEYGIDSNGF
FELSEQPKRVAVIGAGYIAVEIAGVLNALGTETHLFCRKESPLRSFDPMIIETLVEVM
NSEGPQLHTHSVPKQVVKEADGSLTLHLENGQTYNVDTLIWAIGRHPATDAINLAATG
VATNEQGYIKVDEFQNTNVAGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNKLNAK
MDYQLVPTVVFSHPPIGTIGLTEPQAIAQYGAENVKVYKSSFTAMYTAVTSHRQPCKM
KLVCAGPEETVVGLHGIGFAVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEEFVTM
"
misc_feature complement(189470..190819)
/locus_tag="O3Y_00855"
/note="glutathione reductase; Validated; Region: PRK06116"
/db_xref="CDD:235701"
misc_feature complement(190217..>190444)
/locus_tag="O3Y_00855"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; cl17500"
/db_xref="CDD:248054"
misc_feature complement(190073..190315)
/locus_tag="O3Y_00855"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
misc_feature complement(189470..189802)
/locus_tag="O3Y_00855"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:217252"
gene complement(190925..191764)
/locus_tag="O3Y_00860"
/db_xref="GeneID:11913123"
CDS complement(190925..191764)
/locus_tag="O3Y_00860"
/note="COG2961 Protein involved in catabolism of external
DNA"
/codon_start=1
/transl_table=11
/product="DNA processing protein"
/protein_id="YP_005332049.1"
/db_xref="GI:379740080"
/db_xref="GeneID:11913123"
/translation="MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSG
VGRYDLTHEWSEKTGEYKQGIARIWQQDNIPAELDSYLDAIRQLNQGETLRYYPGSPR
VARAHLREQDRMVLTELHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGL
VLIDPPYELAKEYRDVVRAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRK
ILQIELGVAPDTNERGMTASGMIVINPPWTLESQMQTILPFLKQAIAPATGHYKVEWV
VPE"
misc_feature complement(190928..191761)
/locus_tag="O3Y_00860"
/note="Protein involved in catabolism of external DNA
[General function prediction only]; Region: ComJ; COG2961"
/db_xref="CDD:225509"
gene 192044..194086
/locus_tag="O3Y_00865"
/db_xref="GeneID:11913124"
CDS 192044..194086
/locus_tag="O3Y_00865"
/note="COG0339 Zn-dependent oligopeptidases"
/codon_start=1
/transl_table=11
/product="oligopeptidase A"
/protein_id="YP_005332050.1"
/db_xref="GI:379740081"
/db_xref="GeneID:11913124"
/translation="MSNPLLTFTDLPPFSAIKPEHVKPAVEQAIADCRHTIDKVLAEN
PQPSWESVIAPIEEVDDRLSRIWSPVSHMNSVVNSDELREAYESCLPLLSEYSTWVGQ
HKGLFEAYKTIKESAEFAKLDRAQQKNISDSLRDFELSGIGLPLQEQKRYGEISKRMS
ELGSKFSNNVLDATMGWTKQITDVNLLAGMPESALAAAQAAAEAKGLEGYLLTLDIPS
YLPVMTYCDNQALRKEVYEAYVTRASDRGPNAGKWDNSEIIAEQLKLRHEIARMLGFS
TYSEKSLATKMAQTTDQVLGFLNDLANKAKPQGEREVEELRQFAESEFGVKQLELWDI
AYYSEKQKQHLFEISDEELRPYFPEQKVVNGLFEVLSRLFGMQVKERQGVDVWHESVR
FFDIFDAQGTLRGSFYLDLYAREHKRGGAWMDECRVRRTTDSGALQTPVAYLTCNFNR
PVGDKPALFTHDEVTTLFHEFGHGIHHMLTQVEVGAVSGINGVPWDAVELPSQFLENW
CWQEEALAFISGHYQTGEPLPKAMLDKMLAAKNFQSAMFILRQLEFGLFDFTLHTTYD
PEVGPKVLETLAEVKKKVAVLPGLEWNRFSHSFSHIFAGGYSAGYYSYLWAEVLSADA
FSRFEEEGIFNRETGQSFLNNILEMGGSEEPMELFKRFRGREPQIDALLRHAGIAA"
misc_feature 192044..194077
/locus_tag="O3Y_00865"
/note="oligopeptidase A; Provisional; Region: PRK10911"
/db_xref="CDD:182832"
misc_feature 192101..194077
/locus_tag="O3Y_00865"
/note="Peptidase family M3 dipeptidyl carboxypeptidase
(DCP); Region: M3A_DCP; cd06456"
/db_xref="CDD:188995"
misc_feature order(193304..193312,193448..193453,193460..193462,
193538..193540,193547..193549,193694..193696,
193820..193825,193841..193846,193856..193864,
193874..193876,193883..193885)
/locus_tag="O3Y_00865"
/note="active site"
/db_xref="CDD:188995"
misc_feature order(193448..193450,193460..193462,193538..193540)
/locus_tag="O3Y_00865"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:188995"
gene 194224..196395
/gene="uvrD"
/locus_tag="O3Y_00870"
/db_xref="GeneID:11913125"
CDS 194224..196395
/gene="uvrD"
/locus_tag="O3Y_00870"
/note="COG0210 Superfamily I DNA and RNA helicases"
/codon_start=1
/transl_table=11
/product="DNA-dependent helicase II"
/protein_id="YP_005332051.1"
/db_xref="GI:379740082"
/db_xref="GeneID:11913125"
/translation="MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRI
AWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAH
YLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHI
NAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHIL
VDEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNT
IRLEQNYRSTKTILEASNTLIANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVV
SKIKGWQEQGGTLTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDAL
SYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVL
TGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIEN
LEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLE
FPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQD
KYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFSQTVVKESFNETGFNLGSRVRHP
KFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARLEKV"
misc_feature 194227..196392
/gene="uvrD"
/locus_tag="O3Y_00870"
/note="DNA-dependent helicase II; Provisional; Region:
uvrD; PRK11773"
/db_xref="CDD:236976"
misc_feature 194272..194508
/gene="uvrD"
/locus_tag="O3Y_00870"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:222005"
misc_feature <195892..196062
/gene="uvrD"
/locus_tag="O3Y_00870"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:222209"
gene complement(197140..197808)
/locus_tag="O3Y_00875"
/db_xref="GeneID:11913126"
CDS complement(197140..197808)
/locus_tag="O3Y_00875"
/note="COG1280 Putative threonine efflux protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332052.1"
/db_xref="GI:379740083"
/db_xref="GeneID:11913126"
/translation="MNEMSILATLAGVHFIALLSPGPDVALVVQNATQHGRKTGVMIA
LGLSCGILVHLILSLSGISYLVKQQPMLFNLLQLAGGSYLLYLGAGALQSVMAQKNAS
TPTHSPAPSILGNRRQAFTKGMMTNLLNPKALVFFVSLLSSLIPASMSVSGKVSAAAI
LVGLSLTWFSCLAWLLTTSAMQQRMQRITRSVDSICAAVFILAGGVILWQASRAIAQT
FGWL"
misc_feature complement(197173..197802)
/locus_tag="O3Y_00875"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:224199"
gene complement(197883..198695)
/locus_tag="O3Y_00880"
/db_xref="GeneID:11913127"
CDS complement(197883..198695)
/locus_tag="O3Y_00880"
/note="COG2207 AraC-type DNA-binding domain-containing
proteins"
/codon_start=1
/transl_table=11
/product="AraC/XylS family transcriptional regulator"
/protein_id="YP_005332053.1"
/db_xref="GI:379740084"
/db_xref="GeneID:11913127"
/translation="MVSMDTVNYRPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQ
GVQRFYHQGAWHQVGQGGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQ
IEQVIGFEQLIVQDPTLFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQ
PTVKPLGQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWL
RRLRLEQAMKLLQSGKPGTDVAYQVGFYDQAHFSKAFKATYGLSPSLITRFS"
misc_feature complement(<198342..198656)
/locus_tag="O3Y_00880"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature complement(198039..198164)
/locus_tag="O3Y_00880"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature complement(197904..198143)
/locus_tag="O3Y_00880"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(197892..>197987)
/locus_tag="O3Y_00880"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene complement(198843..200597)
/locus_tag="O3Y_00885"
/db_xref="GeneID:11913128"
CDS complement(198843..200597)
/locus_tag="O3Y_00885"
/note="COG0405 Gamma-glutamyltransferase"
/codon_start=1
/transl_table=11
/product="gamma-glutamyltranspeptidase"
/protein_id="YP_005332054.1"
/db_xref="GI:379740085"
/db_xref="GeneID:11913128"
/translation="MNWTHTPLALSALMFAMAAQATPNQATDAVAPEQATGFEHKSLV
KAKNWMVTAANPLASEAGASILRQGGNAIDAMVTTQLMLGLVEPQSSGIGGGSFLVYW
DAKKKALTTFDGRETAPLNATPELFLDSTGQPMKFYDAVVGGRSVGTPGTVKLLWETH
RQYGKLEWARLIEPVAKLAEQGFEVSPRLAALIAEDKERLGRFPATKAYFFDAQGEPL
TAGTLLKNPDYAATLRAIAQQGASAFYQGDIAKDIIATVQNAPGNPGVLAQQDFDTYQ
VKQRAPVCAAYQSYQVCGMGLPSSGGLTVGQILALTEQYDLKGWGAQDVKSWQVLGDA
SQLAFADRGLYMADQDYVPVPTQGLLDKTYLAERAKLIQPGKALTSAPAGNPPWHHAQ
LRSPDQSIELPSTSHFNIVDREGNVVSFTTSIENAFGSRLLVRGFLLNNELTDFSFAT
QSEGRPIANRLEPGKRPRSSMAPTIVLQDNQPYLAIGSPGGSRIIGYVAQAIVAHTQW
GMNIQAAINQPHVLNRFGEIELEQGTSAEQFKPALESLGAKVGIKELNSGLHAIRITA
QGLEGAADPRREGVAIGE"
misc_feature complement(198849..200480)
/locus_tag="O3Y_00885"
/note="Gamma-glutamyltransferase [Amino acid transport and
metabolism]; Region: Ggt; COG0405"
/db_xref="CDD:223482"
misc_feature complement(198861..200411)
/locus_tag="O3Y_00885"
/note="Gamma-glutamyltranspeptidase; Region:
G_glu_transpept; pfam01019"
/db_xref="CDD:216247"
gene complement(200771..201673)
/locus_tag="O3Y_00890"
/db_xref="GeneID:11913129"
CDS complement(200771..201673)
/locus_tag="O3Y_00890"
/note="COG2962 Predicted permeases"
/codon_start=1
/transl_table=11
/product="RarD protein"
/protein_id="YP_005332055.1"
/db_xref="GI:379740086"
/db_xref="GeneID:11913129"
/translation="MTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHR
VVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHML
DASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALA
TSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLL
VCAGVVTTLPLLCFTGAAARLKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFA
FIWSALVIFSVDGLKAGHAARRAR"
misc_feature complement(200780..201664)
/locus_tag="O3Y_00890"
/note="putative chloramphenical resistance permease RarD;
Provisional; Region: PRK15430"
/db_xref="CDD:185328"
gene 201840..203675
/locus_tag="O3Y_00895"
/db_xref="GeneID:11913130"
CDS 201840..203675
/locus_tag="O3Y_00895"
/note="COG0514 Superfamily II DNA helicase"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecQ"
/protein_id="YP_005332056.1"
/db_xref="GI:379740087"
/db_xref="GeneID:11913130"
/translation="MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGR
DSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLMKDQVDQLKANGVAAECVNSTL
AREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRY
MLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDAD
ERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG
LPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYF
GEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRI
REHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITRNSTLQLTEEARPLLRGE
MNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYVVFSDAT
LIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG"
misc_feature 201849..203672
/locus_tag="O3Y_00895"
/note="ATP-dependent DNA helicase RecQ; Provisional;
Region: PRK11057"
/db_xref="CDD:182933"
misc_feature 201969..202397
/locus_tag="O3Y_00895"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature 201996..202010
/locus_tag="O3Y_00895"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature 202284..202295
/locus_tag="O3Y_00895"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature 202479..202865
/locus_tag="O3Y_00895"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature order(202578..202589,202647..202652,202725..202733)
/locus_tag="O3Y_00895"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature order(202749..202751,202812..202814,202824..202826,
202833..202835)
/locus_tag="O3Y_00895"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
misc_feature 203079..203354
/locus_tag="O3Y_00895"
/note="This DNA-binding domain is found in the RecQ
helicase among others and has a helix-turn-helix
structure; Region: RQC; smart00956"
/db_xref="CDD:214936"
misc_feature 203484..203648
/locus_tag="O3Y_00895"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
gene 203668..203967
/locus_tag="O3Y_00900"
/db_xref="GeneID:11913131"
CDS 203668..203967
/locus_tag="O3Y_00900"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332057.1"
/db_xref="GI:379740088"
/db_xref="GeneID:11913131"
/translation="MAEFGLGDYLAAEGRLIVRAENFDFEAFAETALRLVNLLSARVL
EKQCDADLHTWLIDFEGCHLLLRGEHYSQSLWLETLTAGQGDEELAFIAKLLQRI"
misc_feature 203677..203961
/locus_tag="O3Y_00900"
/note="Protein of unknown function (DUF3630); Region:
DUF3630; pfam12305"
/db_xref="CDD:152740"
gene 204138..204500
/locus_tag="O3Y_00905"
/db_xref="GeneID:11913132"
CDS 204138..204500
/locus_tag="O3Y_00905"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332058.1"
/db_xref="GI:379740089"
/db_xref="GeneID:11913132"
/translation="MRLESIHQEVISFERFVWRCLRYALIALLVLLVGLLPGVIGFML
LAELAAAQAWLNALSMVSGLELPYPVADFHQSAALHLFLAFYSLFIETVFFVSLATLF
APAIHRVFHRMHCAEEAQ"
gene complement(204536..206365)
/locus_tag="O3Y_00910"
/db_xref="GeneID:11913133"
CDS complement(204536..206365)
/locus_tag="O3Y_00910"
/note="COG1132 ABC-type multidrug transport system, ATPase
and permease components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332059.1"
/db_xref="GI:379740090"
/db_xref="GeneID:11913133"
/translation="MFQWFEKLTEPFPAQEPQTPPKSLVAFCRYYTQGFEKPLLLMSL
LSACVAMAEVTLVRYMGEIVDILSTQERHQFWEMHGERLWTMAALVLVVMPILALVHS
MLLHQTILGNYPMSIRWSTHRYLLKQSIGFFQRDFAGRVATKVMQNANSVRETVLKLV
DLSVYIAVYMVSMLVMIAEADKILVVPILVWLLFYIAIQVYFVPRLKTISTDQANAQS
QMTGRIVDTYTNITTVKLFSHSQRETTYAKSGMKQFLHTVYRQMRTLTSLLYSVDLIN
YLLLFSIAALSIQLWLAETVTVGVIAIGITIALRMQGMSKWIMWEIRALFESVGTVID
SMNTIANPVEIEDRPQAKSLQVKFGELSFSQVRFGYSAQKTVFDDLNLVIQAGEKVGI
VGRSGAGKSTLVNLLLRFYDVQSGQIRIDGQDISHVSQESLRRHIGMITQDTSLLHRS
IRDNILYGNPDADQAAIEEAARQAHAHDFIQELQDEQGRTGYDVQVGERGVKLSGGQR
QRIAIARVLLKNAPILIMDEATSALDSEVESAIQENLHTLMAGKTVIAIAHRLSTIAA
MDRLIVMDEGKIVEQGTHQELLAHKGIYAQLWAHQTGGFIGEA"
misc_feature complement(204554..206305)
/locus_tag="O3Y_00910"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:224055"
misc_feature complement(205499..206251)
/locus_tag="O3Y_00910"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature complement(204563..205285)
/locus_tag="O3Y_00910"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(205163..205186)
/locus_tag="O3Y_00910"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(204689..204691,204782..204787,
205040..205042,205160..205168,205172..205177))
/locus_tag="O3Y_00910"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature complement(205040..205051)
/locus_tag="O3Y_00910"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature complement(204830..204859)
/locus_tag="O3Y_00910"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(204782..204799)
/locus_tag="O3Y_00910"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature complement(204764..204775)
/locus_tag="O3Y_00910"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(204683..204703)
/locus_tag="O3Y_00910"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 206500..208599
/locus_tag="O3Y_00915"
/db_xref="GeneID:11913134"
CDS 206500..208599
/locus_tag="O3Y_00915"
/note="COG1629 Outer membrane receptor proteins, mostly Fe
transport"
/codon_start=1
/transl_table=11
/product="iron(III) compound receptor"
/protein_id="YP_005332060.1"
/db_xref="GI:379740091"
/db_xref="GeneID:11913134"
/translation="MRNIRPSQLGQYIRRALRLHFIPVVLVAAPSVMANTNQETEQLE
TLVVTASALKVETPAQETPKALSIVTQEEIVARAPQKLDEALRYTSGVTAQPYGADND
TDWLKVRGFDAATYQDGSRLFRDGYYTWLIEPYALERIEVLKGPASILYGEAPPGGVV
NAVQKKPTDIPQGEVGLQVGNDALRTLTLDISDYANQDGSVRYRLVALMKENDGQLNG
TQTSRNYLAPSLSIDISEQTRLTLLASFLEDSGVPTNPFFPAAGTLIDSNFGHIDPST
NLGQPDYDKYERRQVSLGYLFEHDLNDVWALSQTFNYGDNDLYLRSSYAFSNDDPSKD
TLTQGIVFRDGSTESLSLDNKAVAKWDSARVENTLLMGLELQRHQTQGVELDNYSFGT
INPFNPNYGNFTPIDESSAADRTITKEQASLYAQYQIKLDQQWIGLIGGRMDWVDTEN
ESQKNMQRKSRSDAEFSFNAGLMYLASNGVSPYLSYSQSFDVLSTIDSAKGELYKPLK
GEQTEVGVKYQPEFYDGYINLAWFDITQQNALVTNPTTFVATQTGEMTAQGIEVESVG
YVTDSLKLTASYTFTDAKTDETGGKGTQQAGLIPKHQASAWLDYDAAQLGLQGWTFGS
GVRYIGESKDNPRSSDRTVPSVTLVDLMAGYEITENWQVQLNINNLFDREFVSGCDYW
CYYGQSRSAVLSANYRW"
misc_feature 206575..208596
/locus_tag="O3Y_00915"
/note="ferrichrome receptor precursor protein;
Provisional; Region: PRK14050"
/db_xref="CDD:237595"
misc_feature 206698..208596
/locus_tag="O3Y_00915"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:238657"
misc_feature order(206698..206721,206749..206778,206815..206832,
206842..206865,206899..206931,206965..206991)
/locus_tag="O3Y_00915"
/note="N-terminal plug; other site"
/db_xref="CDD:238657"
misc_feature order(207451..207453,207532..207534)
/locus_tag="O3Y_00915"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:238657"
gene 208730..209515
/locus_tag="O3Y_00920"
/db_xref="GeneID:11913135"
CDS 208730..209515
/locus_tag="O3Y_00920"
/note="COG1120 ABC-type cobalamin/Fe3+-siderophores
transport systems, ATPase components"
/codon_start=1
/transl_table=11
/product="iron(III) ABC transporter ATP-binding protein"
/protein_id="YP_005332061.1"
/db_xref="GI:379740092"
/db_xref="GeneID:11913135"
/translation="MFQLADIQMVRGGRTILAIDHLTIPTHELTVVLGHNGSGKSTLV
SLLSGQQSPDNGQVTLNGQSLSSLPSKTLAKAVAFLPQKLPTSAGLTVRELVRLGRFP
WRGTLGRWRKEDELIIDAALEKTGVSGFAHNLADELSGGERQRAWVAMLLAQQSPVLI
LDEPTSALDVHHQYQLMALLAELNQTQGVGIIVILHDLNLALRYATHIVALKQGQIAF
EGGAELLLDEQRLSDLYHSPIRLIDHPNPISHSSTNKVSIVCA"
misc_feature 208730..209467
/locus_tag="O3Y_00920"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:224045"
misc_feature 208760..209389
/locus_tag="O3Y_00920"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature 208829..208852
/locus_tag="O3Y_00920"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature order(208838..208843,208847..208855,208973..208975,
209213..209218,209315..209317)
/locus_tag="O3Y_00920"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature 208964..208975
/locus_tag="O3Y_00920"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature 209141..209170
/locus_tag="O3Y_00920"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature 209201..209218
/locus_tag="O3Y_00920"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature 209225..209236
/locus_tag="O3Y_00920"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature 209303..209323
/locus_tag="O3Y_00920"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene 209506..210465
/locus_tag="O3Y_00925"
/db_xref="GeneID:11913136"
CDS 209506..210465
/locus_tag="O3Y_00925"
/note="COG0614 ABC-type Fe3+-hydroxamate transport system,
periplasmic component"
/codon_start=1
/transl_table=11
/product="iron complex transport system substrate-binding
protein"
/protein_id="YP_005332062.1"
/db_xref="GI:379740093"
/db_xref="GeneID:11913136"
/translation="MCLMSLWNVRLRNICRPKAVFGWLAALCLFALPVQAQIVLTDSQ
GTHTFAEVPQRVVVLNWDLLEQVLELGIQPVGAPELSSYVQWVVQPEVPSSVQDIGTR
TEPNLEKIAALKPDVILAAGPQQDLLATLGRIAPVVYLPNFSEQDNAAQVAISHFKTL
ATLFGKEAVAQQKLEAMYARFSELKASLQHAFGDTLPAVVTLRFANPTSVFLYTENST
PQYVLEQLGLSSALPQPPKEWGIVQKRLSELQHVEQGYVLYFLPFAEEKKVQKSVLWR
AMPFVQAGRVNSVRPVWSYGGAMSLRYSAEAITESLLAVAPQS"
misc_feature 209575..210450
/locus_tag="O3Y_00925"
/note="iron-dicitrate transporter substrate-binding
subunit; Provisional; Region: fecB; PRK11411"
/db_xref="CDD:183123"
misc_feature 209656..210405
/locus_tag="O3Y_00925"
/note="Fe3+-siderophore binding domain FhuD. These
proteins have been shown to function as initial receptors
in ABC transport of Fe3+-siderophores in many eubacterial
species. They belong to the TroA-like superfamily of
helical backbone metal receptor proteins...; Region: FhuD;
cd01146"
/db_xref="CDD:238566"
misc_feature order(209761..209763,209809..209814,209872..209874,
210136..210138)
/locus_tag="O3Y_00925"
/note="siderophore binding site; other site"
/db_xref="CDD:238566"
gene 210462..212423
/locus_tag="O3Y_00930"
/db_xref="GeneID:11913137"
CDS 210462..212423
/locus_tag="O3Y_00930"
/note="COG0609 ABC-type Fe3+-siderophore transport system,
permease component"
/codon_start=1
/transl_table=11
/product="iron-hydroxamate transporter permease subunit"
/protein_id="YP_005332063.1"
/db_xref="GI:379740094"
/db_xref="GeneID:11913137"
/translation="MSVLRLTGLGALTLLLALVSLQWGHNLTLNEQWQLVLGHQAAQS
FAQVNFIYAQLPRAVMAIVVGAVLGLVGSLMQQLTQNRLTSPLTLGTSSGAWLGLIIV
NIWFSDWVADYSALAAMAGALLAFALIISIAGLRNLTGLPLVVSGMVVNILLGSIATA
LVLLNEEFAQNVFMWGAGDLAQNGWEWLTWLLPRLALVFPLLLFAPRVLTLLRLGHEG
AAARGLAVLPAFLFLMAGGIWLVSASITAVGVIGFIGLLTPNIARSLGARTTKMELYS
SALLGALLLLATDMLAMGLSVWAEEVVPSGITAAVIGAPALIWFSRRQLQAQDSLSIS
LSSHRRSPSRWAVMLIAAALLLALSLHIGWQMESASWALPSEFQWPLRWPRMLTALFA
GVGLAIAGTLLQRLIYNPLASPDILGVSSGATFALVFASLFLGQSLQSTHWMTALLGS
AAVLVALLLLGRRHHYAPSSLILTGIAITALLEALVQFTLAKGTGDSYQILLWLSGST
YRATGEQALLLSVGVVGLTLLALGLSRWLTLISIGRGFASARGLSASRASLVLLILVA
LLCALVTATMGPVSFVGLIAPHMAMMLGAQRAPSQLLLAALVGGTLMLWADWLGQALL
FPAQIAAGTLVAIIGGSYFLLLLLSQRAR"
misc_feature 210525..212420
/locus_tag="O3Y_00930"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:236720"
misc_feature 210684..211421
/locus_tag="O3Y_00930"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(210687..210689,210699..210707,211068..211073,
211077..211085,211089..211094,211098..211115,
211119..211127,211248..211250,211266..211268)
/locus_tag="O3Y_00930"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(210702..210704,210708..210710,210723..210725,
210885..210887,210891..210896,210903..210908,
210915..210920,210927..210929,210936..210941,
210945..210947,210978..210983,210990..210992,
211218..211220,211380..211382,211389..211394,
211401..211403,211410..211415)
/locus_tag="O3Y_00930"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(210945..210947,211020..211022,211194..211196,
211206..211208,211335..211337,211371..211373)
/locus_tag="O3Y_00930"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature 211617..212402
/locus_tag="O3Y_00930"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(211671..211673,211683..211691,212052..212057,
212061..212069,212073..212078,212082..212099,
212103..212111,212232..212234,212253..212255)
/locus_tag="O3Y_00930"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(211686..211688,211692..211694,211707..211709,
211869..211871,211875..211880,211887..211892,
211899..211904,211911..211913,211920..211925,
211929..211931,211962..211967,211974..211976,
212202..212204,212358..212360,212367..212372,
212379..212381,212388..212393,212400..212402)
/locus_tag="O3Y_00930"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(211929..211931,212004..212006,212178..212180,
212190..212192,212322..212324,212349..212351)
/locus_tag="O3Y_00930"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(212450..213298)
/locus_tag="O3Y_00935"
/db_xref="GeneID:11913138"
CDS complement(212450..213298)
/locus_tag="O3Y_00935"
/note="COG1737 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="transcriptional regulator RpiR family protein"
/protein_id="YP_005332064.1"
/db_xref="GI:379740095"
/db_xref="GeneID:11913138"
/translation="MSVLQRIVSRRTQLSESGRQIGDWVLANAAQAAAMTSQDLAAWA
NVSQSSIVKFTQRLGFKGYSEFKLALTEELGRKQVMVNQPLHSNILADDPVAVIAQKL
VQTKTEAMFHTTNALRLDEFSEAISWIQQAVRVQIIGIGGSALVAKDLAFKLLKLGIT
ALTEQDSHVQIATARTLHSQDVLIAISFSGEKREILIAAEAAKQQGAKVIALTTPNKN
RLREIADLALDTIADETQHRSSAIASRTAQNVLTDLIFLTLTQQRETSARQLIDDISS
DIRQMR"
misc_feature complement(212453..213298)
/locus_tag="O3Y_00935"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:224651"
misc_feature complement(213077..213298)
/locus_tag="O3Y_00935"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature complement(212528..212941)
/locus_tag="O3Y_00935"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:240144"
misc_feature complement(order(212738..212740,212870..212872))
/locus_tag="O3Y_00935"
/note="putative active site [active]"
/db_xref="CDD:240144"
gene 213529..214431
/gene="murQ"
/locus_tag="O3Y_00940"
/db_xref="GeneID:11913139"
CDS 213529..214431
/gene="murQ"
/locus_tag="O3Y_00940"
/note="COG2103 Predicted sugar phosphate isomerase"
/codon_start=1
/transl_table=11
/product="N-acetylmuramic acid 6-phosphate etherase"
/protein_id="YP_005332065.1"
/db_xref="GI:379740096"
/db_xref="GeneID:11913139"
/translation="MKIDLTRLVTESRNPASEQIDTLPTLDMLKVINQQDQLVALAVA
QTLPQVAQAVEAIATAFAQGGRLIYMGAGTSGRLGILDASECPPTYGSQPEQVIGLIA
GGHTAILKAVENAEDNRELGQSDLKALHLSEKDVLVGIAASGRTPYVIAGMEYARSVG
ATVVSLACNPGCPMEAYADIVITPVVGAEVVTGSSRMKAGTAQKLVLNMLTTGAMIKS
GKVFGNLMVDVEATNAKLIQRQTNIVVEATGVSAEQAEAALAACGRHCKTAILMILGG
FSAEQAAQKLTQHQGFIRAALNQE"
misc_feature 213535..214425
/gene="murQ"
/locus_tag="O3Y_00940"
/note="N-acetylmuramic acid-6-phosphate etherase;
Reviewed; Region: murQ; PRK05441"
/db_xref="CDD:235467"
misc_feature 213574..214344
/gene="murQ"
/locus_tag="O3Y_00940"
/note="N-acetylmuramic acid 6-phosphate etherase. Members
of this family contain the SIS (Sugar ISomerase) domain.
The SIS domain is found in many phosphosugar isomerases
and phosphosugar binding proteins. The bacterial cell wall
sugar N-acetylmuramic acid...; Region: SIS_Etherase;
cd05007"
/db_xref="CDD:240140"
misc_feature order(213751..213753,213949..213951)
/gene="murQ"
/locus_tag="O3Y_00940"
/note="putative active site [active]"
/db_xref="CDD:240140"
gene 214462..215907
/gene="murP"
/locus_tag="O3Y_00945"
/db_xref="GeneID:11913140"
CDS 214462..215907
/gene="murP"
/locus_tag="O3Y_00945"
/note="COG1264 Phosphotransferase system IIB components"
/codon_start=1
/transl_table=11
/product="PTS system N-acetylmuramic acid transporter
subunit IIBC"
/protein_id="YP_005332066.1"
/db_xref="GI:379740097"
/db_xref="GeneID:11913140"
/translation="MAKITQTMMAQVLSLVGGSGNVAKCGNCMTRLRLTLNNSALADH
AALKKISGVMGVVESDAQLQIILGPGKAQTAADMMNALIESGDNVAPAVSEADLSTIA
AQQKKQMKSKQTSAVQRFLSKFATIFTPLIPGFIAAGLLLGIATLLEQIYVVGQTPSE
FMLDLVAYLKVFGKGLFAFLSILIGYNAQQAFGGSGVNGAILASLFVLGYDPEATKGI
YSGMSEFFGFAIDPRGNIIGVLLAAILGAQVERKVREYMPDDLDMILTSVVTLLIMGA
VTFLIIMPIGGELFKGMSWLFLNLNDNPLGAAILAGLFLISVVFGIHQGFVPVYFALM
EAQGFNSLFPILAMAGAGQVGASLALYARAKKETTIRTQIKGAIIPGILGIGEPLIYG
VTLPRVKPFVTACIGGAAGGFFIGLISYLGLPVGLNTVFGPSGVVAIPLMTSADGIFA
GMAVFVGGLLISYTVGFAATYFFGCKDVDLS"
misc_feature 214462..215904
/gene="murP"
/locus_tag="O3Y_00945"
/note="PTS system N-acetylmuramic acid transporter
subunits EIIBC; Reviewed; Region: murP; PRK09586"
/db_xref="CDD:181971"
misc_feature 214477..214710
/gene="murP"
/locus_tag="O3Y_00945"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cd00212"
/db_xref="CDD:238130"
misc_feature 214540..214560
/gene="murP"
/locus_tag="O3Y_00945"
/note="active site turn [active]"
/db_xref="CDD:238130"
misc_feature 214543..214545
/gene="murP"
/locus_tag="O3Y_00945"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238130"
misc_feature 214810..215898
/gene="murP"
/locus_tag="O3Y_00945"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:224183"
gene complement(216014..216502)
/locus_tag="O3Y_00950"
/db_xref="GeneID:11913141"
CDS complement(216014..216502)
/locus_tag="O3Y_00950"
/note="COG2862 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332067.1"
/db_xref="GI:379740098"
/db_xref="GeneID:11913141"
/translation="MERLIEKLLYSSRWIMAPIYLGLSLLLLALGIKFFQEIFHLLPN
IFTIKEVDLILVALSLIDVSLVGGLIVMVMFSGYENFVSKLDVDESEDKLGWLGKLDT
SSLKNKVSASIVAISSIHLLKVFMNTENIESDKIKWYLLLHITFVVSAFAMGYLDKIT
KK"
misc_feature complement(216017..216502)
/locus_tag="O3Y_00950"
/note="hypothetical protein; Provisional; Region:
PRK05208"
/db_xref="CDD:179964"
gene complement(216568..217434)
/locus_tag="O3Y_00955"
/db_xref="GeneID:11913142"
CDS complement(216568..217434)
/locus_tag="O3Y_00955"
/note="COG1561 Uncharacterized stress-induced protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332068.1"
/db_xref="GI:379740099"
/db_xref="GeneID:11913142"
/translation="MIYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRG
LEPLLRERFRQRLSRGKIECHLRFEANPAAQSHLTINEGLAQQVINAANQIMHMTGEL
SRINPFQVMQWPGVMETPEQDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQR
LQAISAEVVKVRARMPEILEWQRERLFSKFEEAKIELDASRVEQELILLAQKSDVAEE
LDRLDSHVKEAREVLKKGGSCGRKLDFMMQEFNRESNTLASKSISTDITASGVELKVL
IEQMREQIQNIE"
misc_feature complement(216571..217434)
/locus_tag="O3Y_00955"
/note="hypothetical protein; Provisional; Region:
PRK11820"
/db_xref="CDD:236993"
misc_feature complement(216970..217431)
/locus_tag="O3Y_00955"
/note="YicC-like family, N-terminal region; Region:
YicC_N; pfam03755"
/db_xref="CDD:217714"
misc_feature complement(216571..216828)
/locus_tag="O3Y_00955"
/note="Domain of unknown function (DUF1732); Region:
DUF1732; pfam08340"
/db_xref="CDD:149411"
gene 217598..218314
/gene="rph"
/locus_tag="O3Y_00960"
/db_xref="GeneID:11913143"
CDS 217598..218314
/gene="rph"
/locus_tag="O3Y_00960"
/EC_number="2.7.7.56"
/note="COG0689 RNase PH"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="YP_005332069.1"
/db_xref="GI:379740100"
/db_xref="GeneID:11913143"
/translation="MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIE
EGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVV
DLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVA
AVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELL
AVAKKGIADIVAVQKASLLD"
misc_feature 217598..218305
/gene="rph"
/locus_tag="O3Y_00960"
/note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
/db_xref="CDD:178914"
misc_feature 217625..218305
/gene="rph"
/locus_tag="O3Y_00960"
/note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
/db_xref="CDD:206767"
misc_feature order(217655..217669,217697..217699,217703..217705,
217709..217711,217715..217717,217721..217723,
217781..217783,217787..217789,217793..217810,
217814..217816,217823..217828,217850..217855,
217859..217864,217871..217873,217883..217885,
217892..217894,217934..217936,217940..217942,
217946..217948,217952..217960,218183..218197,
218201..218203,218207..218224,218228..218230,
218237..218242,218249..218254,218261..218263)
/gene="rph"
/locus_tag="O3Y_00960"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:206767"
misc_feature order(217790..217792,217853..217855,217958..217975,
218135..218137,218153..218155)
/gene="rph"
/locus_tag="O3Y_00960"
/note="active site"
/db_xref="CDD:206767"
gene 218681..219322
/gene="pyrE"
/locus_tag="O3Y_00965"
/db_xref="GeneID:11913144"
CDS 218681..219322
/gene="pyrE"
/locus_tag="O3Y_00965"
/EC_number="2.4.2.10"
/note="COG0461 Orotate phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase"
/protein_id="YP_005332070.1"
/db_xref="GI:379740101"
/db_xref="GeneID:11913144"
/translation="MKAYQREFIEFALEKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
DLARLGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRKEA
KNHGEGGNLVGSKLEGRVMLVDDVITAGTAIRESMELIQANKADLAGVLVAIDRQEKG
KGELSAIQEVERDFGCAVISIVSLTDLITYLEQQGNNTEHLEAVKAYRAQYGI"
misc_feature 218825..219178
/gene="pyrE"
/locus_tag="O3Y_00965"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(218891..218893,218897..218899,219050..219058,
219062..219076,219146..219148)
/gene="pyrE"
/locus_tag="O3Y_00965"
/note="active site"
/db_xref="CDD:206754"
gene complement(219408..220385)
/locus_tag="O3Y_00970"
/db_xref="GeneID:11913145"
CDS complement(219408..220385)
/locus_tag="O3Y_00970"
/note="COG1560 Lauroyl/myristoyl acyltransferase"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
acyltransferase"
/protein_id="YP_005332071.1"
/db_xref="GI:379740102"
/db_xref="GeneID:11913145"
/translation="MSDQDNGIARHLHNPQFEWRFLHPKHWGTWIGIAFAALLAFIPW
RLRDRLAKPLVPLIIKKNGRVVRRARVNLAYCFPEKSEQEREQILHDTFVKASQFMLG
YSELLVRSTRYNNARGELIGEENLLPLLDSGERVILLVPHSWAIDYAAVMLAARGYKV
ANIMKPQRNPIADWLMHVQRMQYGGRIFTRESGIKPFLRSIQSGYVGYWVPDEDHGPQ
NSVFVPFFATEKATLKGFGKMAKLCKAHVVPLMSCYNSDSGRYEVHILPALQNFPTGD
EEADALAMNRAIEALVTPQPEQYMWNLSLLKTQRDGSEIYDNSHHGDQS"
misc_feature complement(219462..220343)
/locus_tag="O3Y_00970"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature complement(<219885..220256)
/locus_tag="O3Y_00970"
/note="Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis; Region: LPLAT; cl17185"
/db_xref="CDD:247739"
misc_feature complement(219483..220031)
/locus_tag="O3Y_00970"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature complement(order(219741..219749,219885..219896,
219945..219947,219951..219953,219960..219962))
/locus_tag="O3Y_00970"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene complement(220396..221343)
/locus_tag="O3Y_00975"
/db_xref="GeneID:11913146"
CDS complement(220396..221343)
/locus_tag="O3Y_00975"
/note="COG1560 Lauroyl/myristoyl acyltransferase"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis lauroyl acyltransferase"
/protein_id="YP_005332072.1"
/db_xref="GI:379740103"
/db_xref="GeneID:11913146"
/translation="MSQDKYSKPEFSFSLLHPKYWGVWLGFGLLALLVNLLPYPVLLK
IGRGLGQFSMRFGKKRVHIARRNLELAFPTMSQSEIDAFVLENFKNTGAALIETGITW
FWPTWRFKRILIDKDTQAIRQHAKTGQGVLLCCVHALNLEITARAFAVLGIGGYGVYR
PHSNPAYEFIQYRGRTRNGNQLINRTDIKQMIRVLRQGERLFYLPDQDYGHNKSVFVP
FFAVEEACTTTGTSILAYTSHCAIVIGSGFRNAQGRYEIMADKSIEADYPQKDETAAA
AYMNKFVEEIILRAPEQWMWLHKRFKSLPDYELTNSRYQ"
misc_feature complement(220435..221322)
/locus_tag="O3Y_00975"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature complement(220438..221025)
/locus_tag="O3Y_00975"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature complement(order(220717..220725,220858..220869,
220918..220920,220924..220926,220933..220935))
/locus_tag="O3Y_00975"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene complement(221349..221939)
/gene="slmA"
/locus_tag="O3Y_00980"
/db_xref="GeneID:11913147"
CDS complement(221349..221939)
/gene="slmA"
/locus_tag="O3Y_00980"
/note="COG1309 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="division inhibitor protein"
/protein_id="YP_005332073.1"
/db_xref="GI:379740104"
/db_xref="GeneID:11913147"
/translation="MAGNKKINRREEILQALAEMLESNEGASRITTAKLAKQVGVSEA
ALYRHFPSKARMFEGLIEFIEESLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNPG
LTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQL
LGQVEGSLNRFVRSDFKYLPTANFDEYWALLSAQIK"
misc_feature complement(221361..221939)
/gene="slmA"
/locus_tag="O3Y_00980"
/note="division inhibitor protein; Provisional; Region:
slmA; PRK09480"
/db_xref="CDD:181894"
misc_feature complement(221760..221903)
/gene="slmA"
/locus_tag="O3Y_00980"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(222098..223297)
/locus_tag="O3Y_00985"
/db_xref="GeneID:11913148"
CDS complement(222098..223297)
/locus_tag="O3Y_00985"
/EC_number="6.3.2.5"
/note="COG0452 Phosphopantothenoylcysteine
synthetase/decarboxylase"
/codon_start=1
/transl_table=11
/product="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase"
/protein_id="YP_005332074.1"
/db_xref="GI:379740105"
/db_xref="GeneID:11913148"
/translation="MQSLAGKKILLGISGGIAAYKCAELTRRLVERGATVQVVMTHAA
KEFITPLTMQAVSGRPVSDSLLDPAAEASMGHIELAKWADLVLLAPATADLIARMAAG
MGNDLLTTLILATSAPVAIAPAMNQQMYRNIATQENLQTLIRRGYLTWGPAAGEQACG
DVGPGRMLEPMELVAHCENFFAPKILVGKRVLITAGPTREALDPVRYITNHSSGKMGF
ALAKAAAQLGADVTLVSGPVHLPTPVGVNRIDVQSGLEMHSAVMKEATSHQIFIACAA
VADYRPQTVAEQKIKKSRDNDTLTIEMVKNPDIVASVAALTENRPFTVGFAAETQDVE
TYARSKLVRKNLDMICANDVSIAGQGFNSNDNALTLFWKEGQHSLPLTSKDALASAVM
HLIHEQM"
misc_feature complement(222107..223240)
/locus_tag="O3Y_00985"
/note="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated;
Region: PRK05579"
/db_xref="CDD:235513"
misc_feature complement(222893..223240)
/locus_tag="O3Y_00985"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:217035"
misc_feature complement(222185..222742)
/locus_tag="O3Y_00985"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:217913"
gene 223480..225159
/locus_tag="O3Y_00990"
/db_xref="GeneID:11913149"
CDS 223480..225159
/locus_tag="O3Y_00990"
/note="COG0840 Methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_005332075.1"
/db_xref="GI:379740106"
/db_xref="GeneID:11913149"
/translation="MLSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELEN
YRTDLIDAKKKELQAYLMMGVTAVKPLYESDKAGENQAQAKQILKAMRFDSDGYFFAY
DSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQ
APKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVF
TIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDK
LHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVA
SNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQV
LKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLN
ALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQ
SAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFKL"
misc_feature 223615..223884
/locus_tag="O3Y_00990"
/note="Cache domain; Region: Cache_2; pfam08269"
/db_xref="CDD:219770"
misc_feature 224170..224313
/locus_tag="O3Y_00990"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(224170..224172,224179..224184,224188..224193,
224200..224205,224209..224211,224263..224268,
224272..224277,224284..224289,224293..224298,
224305..224310)
/locus_tag="O3Y_00990"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 224347..225153
/locus_tag="O3Y_00990"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:214599"
misc_feature 224449..224952
/locus_tag="O3Y_00990"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(224473..224478,224485..224490,224497..224499,
224506..224511,224515..224520,224527..224529,
224536..224541,224548..224550,224557..224562,
224569..224574,224581..224583,224590..224595,
224599..224604,224614..224616,224620..224625,
224632..224634,224641..224646,224653..224658,
224665..224667,224674..224676,224683..224688,
224695..224697,224707..224709,224716..224718,
224737..224739,224749..224751,224758..224760,
224767..224772,224779..224781,224788..224793,
224800..224805,224809..224814,224821..224826,
224863..224868,224875..224877,224884..224889,
224896..224898,224905..224910,224914..224919,
224926..224931,224938..224940,224947..224952)
/locus_tag="O3Y_00990"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 224683..224784
/locus_tag="O3Y_00990"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 225271..225945
/locus_tag="O3Y_00995"
/db_xref="GeneID:11913150"
CDS 225271..225945
/locus_tag="O3Y_00995"
/note="COG2003 DNA repair proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332076.1"
/db_xref="GI:379740107"
/db_xref="GeneID:11913150"
/translation="MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVL
ALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFVQLQAVLEMTQRYLAETLKRGDA
LTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSF
AERGWI"
misc_feature 225271..225942
/locus_tag="O3Y_00995"
/note="hypothetical protein; Reviewed; Region: PRK00024"
/db_xref="CDD:178801"
misc_feature 225604..225927
/locus_tag="O3Y_00995"
/note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466;
cd08071"
/db_xref="CDD:163702"
misc_feature order(225637..225639,225787..225789,225793..225795,
225817..225819,225826..225828)
/locus_tag="O3Y_00995"
/note="MPN+ (JAMM) motif; other site"
/db_xref="CDD:163702"
misc_feature order(225787..225789,225793..225795,225826..225828)
/locus_tag="O3Y_00995"
/note="Zinc-binding site [ion binding]; other site"
/db_xref="CDD:163702"
gene 226240..226476
/gene="rpmB"
/locus_tag="O3Y_01000"
/db_xref="GeneID:11913151"
CDS 226240..226476
/gene="rpmB"
/locus_tag="O3Y_01000"
/note="COG0227 Ribosomal protein L28"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="YP_005332077.1"
/db_xref="GI:379740108"
/db_xref="GeneID:11913151"
/translation="MSRVCQVTGKRPAVGNNRSHAKNATKRRFLPNLQTHRFWVESEK
RFVKLRLTAKGMRIIDKKGIDAVLVEIRARGENV"
misc_feature 226240..226467
/gene="rpmB"
/locus_tag="O3Y_01000"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:234736"
gene 226490..226657
/gene="rpmG"
/locus_tag="O3Y_01005"
/db_xref="GeneID:11913152"
CDS 226490..226657
/gene="rpmG"
/locus_tag="O3Y_01005"
/note="COG0267 Ribosomal protein L33"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="YP_005332078.1"
/db_xref="GI:379740109"
/db_xref="GeneID:11913152"
/translation="MAKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKYDPVVR
QHVVYKEAKIK"
misc_feature 226490..226648
/gene="rpmG"
/locus_tag="O3Y_01005"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00595"
/db_xref="CDD:179075"
gene 226884..227366
/locus_tag="O3Y_01010"
/db_xref="GeneID:11913153"
CDS 226884..227366
/locus_tag="O3Y_01010"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332079.1"
/db_xref="GI:379740110"
/db_xref="GeneID:11913153"
/translation="MRVSPNRRRRWNNILILSVIAFIAVINLPTVIKSYLLPDPASQF
PSLLRTDATLQALYFPAFSLEKSREEWQSEPELSVDGQELVQRWHALTGTEVDEATYR
ALQPTLPNAQTIEVWYADREEPQRITFYQTPQFWLLKNWQDRWIAVSAEASYLFPAPL
"
gene 227376..228185
/locus_tag="O3Y_01015"
/db_xref="GeneID:11913154"
CDS 227376..228185
/locus_tag="O3Y_01015"
/EC_number="3.2.2.23"
/note="COG0266 Formamidopyrimidine-DNA glycosylase"
/codon_start=1
/transl_table=11
/product="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase"
/protein_id="YP_005332080.1"
/db_xref="GI:379740111"
/db_xref="GeneID:11913154"
/translation="MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELKQL
EGQTILAIHRRAKYLIIETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKR
LRYNDPRRFGAWLWCAPDESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIMD
NAAVVGVGNIYANESLFTSRLHPLRPAHSLSLEEWQTLVANIKQVLQVAIKQGGTTLK
DFTQSDGKPGYFAQELQVYGKAKQPCPHCGEPLCEQKIAQRNTFFCPQCQH"
misc_feature 227376..228182
/locus_tag="O3Y_01015"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:234899"
misc_feature 227379..227729
/locus_tag="O3Y_01015"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature order(227379..227384,227544..227546,227586..227588,
227592..227600,227640..227645,227697..227708)
/locus_tag="O3Y_01015"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature 227379..227381
/locus_tag="O3Y_01015"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature order(227382..227393,227397..227402,227409..227411,
227535..227546,227598..227600)
/locus_tag="O3Y_01015"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature order(227382..227384,227544..227546)
/locus_tag="O3Y_01015"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature 227586..227588
/locus_tag="O3Y_01015"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature order(227595..227597,227700..227702,227706..227708)
/locus_tag="O3Y_01015"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature 227598..227600
/locus_tag="O3Y_01015"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature order(227643..227645,227703..227705)
/locus_tag="O3Y_01015"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature 227760..228038
/locus_tag="O3Y_01015"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
misc_feature 228096..228182
/locus_tag="O3Y_01015"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene complement(228282..228776)
/gene="coaD"
/locus_tag="O3Y_01020"
/db_xref="GeneID:11913155"
CDS complement(228282..228776)
/gene="coaD"
/locus_tag="O3Y_01020"
/EC_number="2.7.7.3"
/note="COG0669 Phosphopantetheine adenylyltransferase"
/codon_start=1
/transl_table=11
/product="phosphopantetheine adenylyltransferase"
/protein_id="YP_005332081.1"
/db_xref="GI:379740112"
/db_xref="GeneID:11913155"
/translation="MSQKRLSRVIYPGTFDPITNGHLDLIERAAQMFDEVIIAVAASP
SKNTLFTLEERVEFARQVTSHLDNVSAKGFSGLLVDFAKAEKANVLIRGLRTTVDFEY
EFGLTNMYRRLMPGLESVFLTPAEEHAFISSTLVREVAIHGGNVDEFVPAIVANALHQ
KKKI"
misc_feature complement(228288..228755)
/gene="coaD"
/locus_tag="O3Y_01020"
/note="phosphopantetheine adenylyltransferase;
Provisional; Region: coaD; PRK00168"
/db_xref="CDD:234674"
misc_feature complement(228297..228755)
/gene="coaD"
/locus_tag="O3Y_01020"
/note="Phosphopantetheine adenylyltransferase; Region:
PPAT; cd02163"
/db_xref="CDD:173914"
misc_feature complement(order(228384..228386,228393..228395,
228405..228407,228447..228449,228459..228461,
228468..228473,228492..228494,228498..228503,
228543..228551,228639..228641,228654..228656,
228702..228704,228711..228716,228732..228746))
/gene="coaD"
/locus_tag="O3Y_01020"
/note="active site"
/db_xref="CDD:173914"
misc_feature complement(228711..228722)
/gene="coaD"
/locus_tag="O3Y_01020"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:173914"
gene 228887..229924
/locus_tag="O3Y_01025"
/db_xref="GeneID:11913156"
CDS 228887..229924
/locus_tag="O3Y_01025"
/note="COG0859 ADP-heptose:LPS heptosyltransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332082.1"
/db_xref="GI:379740113"
/db_xref="GeneID:11913156"
/translation="MKKLLVIRNDKIGDFMLAWPSFAMLKASLPDCHITALVPKYTAA
LAELCPWIDAVIIDPGQQADKAQHKQLVQTVKAQQFDASINLFSTMYNALLVWKARIP
YRLAPATKLAQIFYQHRIKQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTF
PAEQLAAQRSKLAEQLDIGPDKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHKQVV
LTAGPGEEEKAAQLQSLLAEQGVLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIA
AALDVPTVGFFPAKRSATPLRWRPLNSQGKHIAFCPPPADDKANQENMGRIDMKSVLT
ELAPWLRSVQL"
misc_feature 228887..229909
/locus_tag="O3Y_01025"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature 228893..229828
/locus_tag="O3Y_01025"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature order(229364..229369,229544..229546,229649..229654,
229688..229690,229697..229702,229709..229711)
/locus_tag="O3Y_01025"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(229986..230765)
/locus_tag="O3Y_01030"
/db_xref="GeneID:11913157"
CDS complement(229986..230765)
/locus_tag="O3Y_01030"
/note="COG0463 Glycosyltransferases involved in cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="(heptosyl)LPS beta-1,4-glucosyltransferase"
/protein_id="YP_005332083.1"
/db_xref="GI:379740114"
/db_xref="GeneID:11913157"
/translation="MSKPTLAVALIVKNEARHLDECLQTVHDWVDEIVVLDSGSHDET
EQVARRYTEKFYVNAKWPGFGLQRQLAQSYVQSDYVLWLDADERVTPELKQSILQAVA
ANKPDTLYQFARLSWVFGRFIRHSGWYPDRVLRLYPTQLTRYNDALVHEKVHVEPSMK
VETLAGDAIHYTYNDVHHYLVKSAGYAKAWADQRQAKGKKASLSQGIVHAVGCFLKMY
LLKRGFLDGKQGFLIALLSAHSTFVKYADLWARDNDEHYKR"
misc_feature complement(229989..230762)
/locus_tag="O3Y_01030"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:223539"
misc_feature complement(230064..230753)
/locus_tag="O3Y_01030"
/note="UDP-glucose LOS-beta-1,4 glucosyltransferase is
required for biosynthesis of lipooligosaccharide; Region:
Beta4Glucosyltransferase; cd02511"
/db_xref="CDD:133005"
misc_feature complement(order(230508..230510,230514..230516))
/locus_tag="O3Y_01030"
/note="putative metal binding site; other site"
/db_xref="CDD:133005"
gene complement(230808..231875)
/locus_tag="O3Y_01035"
/db_xref="GeneID:11913158"
CDS complement(230808..231875)
/locus_tag="O3Y_01035"
/note="COG0859 ADP-heptose:LPS heptosyltransferase"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide heptosyltransferase I"
/protein_id="YP_005332084.1"
/db_xref="GI:379740115"
/db_xref="GeneID:11913158"
/translation="MALFQSAPHSLCILRLSAIGDVCNTIAAVQAIQRQWPQTRITWV
TGKLEAELIQSLPDIQVIVFDKKLGWRAYTQLWQQLKSERFDALLHMQYAFRASIATL
GIKARYKLGFDAARSQDFQTWFTNVKVPSPDKMHVLDGLLAFVEHLGIRDIEPKWSLT
CQPDDLTWAEAQFQPEQPRLVVVPGASKAYKNWTAEGYAAVIEHAQQQGWQVILAGSP
AQVERDLAAQVEQALAHPVLNLVGKSTLQQMLALLAKADLVIAPDTGPAHMANAMHTP
IIGLYAHHNPERTGPYHYRHYVVSAYQEALLAETGKMPQQVDWRTRVKDPNAMQRITA
QQVIAMFERAAADIMATQVND"
misc_feature complement(230847..231854)
/locus_tag="O3Y_01035"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature complement(230859..231848)
/locus_tag="O3Y_01035"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(231069..231071,231078..231083,
231090..231092,231126..231131,231231..231233,
231327..231332))
/locus_tag="O3Y_01035"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene 232009..232716
/locus_tag="O3Y_01040"
/db_xref="GeneID:11913159"
CDS 232009..232716
/locus_tag="O3Y_01040"
/note="COG0515 Serine/threonine protein kinase"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid kinase"
/protein_id="YP_005332085.1"
/db_xref="GI:379740116"
/db_xref="GeneID:11913159"
/translation="MIQTFNDAQQKVWFDDALLHEDPSQCCNPEFWQQNGKVLGSATG
RGTTWFVQLQQTQGALRHYRRGGLFGKLVADSYWFTGWEKTRSYQEFMLLNHLRDAGV
NVPRPIAARVQKHGLLYKADLLSEKVPNARDLVSILQESPISDELYRKIGREIRKMHD
AQVNHTDLNIHNILIDDQEKVWIIDFDKCYVQIGDSWKQGNLKRLKRSFEKEVCKRGI
NWSLEAFAIISSYKHEE"
misc_feature 232009..232707
/locus_tag="O3Y_01040"
/note="3-deoxy-D-manno-octulosonic-acid kinase; Reviewed;
Region: PRK01723"
/db_xref="CDD:234975"
misc_feature <232273..232569
/locus_tag="O3Y_01040"
/note="Aminoglycoside 3'-phosphotransferase (APH) and
Choline Kinase (ChoK) family. The APH/ChoK family is part
of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs)...;
Region: APH_ChoK_like; cd05120"
/db_xref="CDD:240159"
misc_feature order(232321..232323,232381..232392,232507..232509,
232519..232524,232528..232530,232558..232563)
/locus_tag="O3Y_01040"
/note="active site"
/db_xref="CDD:240159"
misc_feature order(232321..232323,232381..232392,232507..232509,
232519..232524,232528..232530,232558..232563)
/locus_tag="O3Y_01040"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:240159"
gene 232720..233679
/locus_tag="O3Y_01045"
/db_xref="GeneID:11913160"
CDS 232720..233679
/locus_tag="O3Y_01045"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332086.1"
/db_xref="GI:379740117"
/db_xref="GeneID:11913160"
/translation="MLFDQITFVIQGPITPSITSTSVRRLRSIFPGCQIIVSTWEGEN
TQDIEADLIIYNKDPGSTIFVYSKRNDAIPVNINRQIVSTVSGLRHVKTKFAAKLRAD
NILNKRRVLEIFEQFPLRKEGYAVLNNRLVCSNYFAKEFERGLSVPFFFSDFFQFGEV
EDLLKVWDCDLYSDYDFKSTLSGKKQHKYYPNDSVNVEQKIWSNAARKLYPYELKDEH
GDHFARQQSYNFMINNLIIVDGDELGLDVPQRLRHSNSYPYDFFTFQRWKWLYENEFL
KTKNTPLNFKFFWYLSLIIKTIRKGVRLKLRKTLTPIFIKVRE"
misc_feature 232735..233655
/locus_tag="O3Y_01045"
/note="WavE lipopolysaccharide synthesis; Region: WavE;
pfam07507"
/db_xref="CDD:219438"
gene complement(233683..234612)
/locus_tag="O3Y_01050"
/db_xref="GeneID:11913161"
CDS complement(233683..234612)
/locus_tag="O3Y_01050"
/note="COG1887 Putative glycosyl/glycerophosphate
transferases involved in teichoic acid biosynthesis
TagF/TagB/EpsJ/RodC"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332087.1"
/db_xref="GI:379740118"
/db_xref="GeneID:11913161"
/translation="MIKIDDEAITFVVQGPVQASASRQQIAGITEQCLNSIRRFFPKS
TIILSTWKGQPLDGLDYDQVLELDDPGANTVFYDGQPIKLNNNRQMYSTHMGLKAVKT
PYAVKLRTDNLLTGRQFVELYERYADLPRAQNYQFLTQRVLTSSTFFISSHYGHPVHF
HKSDLFDFGLTQDLLTIWSDRWIPELHFTLKPGYKARHPATEQVLCLNWISALLDEEH
HIESKTCDHAGLGENFWPQFMANNLLMDCPENIGLDVTERFYKRGNLALEYDLKDWLH
LNQITSIPYDKKRLYRYYRNQIGRILKKIHSFN"
misc_feature complement(233689..234588)
/locus_tag="O3Y_01050"
/note="WavE lipopolysaccharide synthesis; Region: WavE;
pfam07507"
/db_xref="CDD:219438"
gene complement(234609..235352)
/locus_tag="O3Y_01055"
/db_xref="GeneID:11913162"
CDS complement(234609..235352)
/locus_tag="O3Y_01055"
/note="COG1209 dTDP-glucose pyrophosphorylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332088.1"
/db_xref="GI:379740119"
/db_xref="GeneID:11913162"
/translation="MIVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYF
ASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQG
VDYQGSITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVIQT
AEKNPISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNLLIQKGLN
IHYHLIARHEVIFCGVPDEYTDFLRQPQP"
misc_feature complement(234636..235349)
/locus_tag="O3Y_01055"
/note="GT2_BcbE_like is likely involved in the
biosynthesis of the polysaccharide capsule; Region:
GT2_BcE_like; cd04183"
/db_xref="CDD:133026"
misc_feature complement(order(235008..235010,235332..235334,
235338..235340))
/locus_tag="O3Y_01055"
/note="Ligand binding site; other site"
/db_xref="CDD:133026"
gene complement(235349..236932)
/locus_tag="O3Y_01060"
/db_xref="GeneID:11913163"
CDS complement(235349..236932)
/locus_tag="O3Y_01060"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332089.1"
/db_xref="GI:379740120"
/db_xref="GeneID:11913163"
/translation="MFLIMSGAYVGQELESEFGRIPPSFLPLGNRRLFQHQVALAPQG
VKVYLSLPESYVVSEIDLQWLEQNQVTIIATPDGLSLGASLVAALNISGHSLNAPLHI
LYGDTLFNQLPVGDDIVSVSTAKDSYNWAVLTNDDVDWLQDANTPMSHESQRIIDGYF
KFSHPRELVRCITQSEWKFIAGLNRYHKSVGLSAVNSIGWLDFGHVNTYYHSKAEFTT
QRAFNELTITAKWIEKSSIKNQKIAAEAYWFDNLPMAMRGFIPQYLGSQNSEGKISYR
LEYLYLTALNELFVFSRLPSQIWQKILASAVEFLSLCLEQAVEPNAPINTLDILFADK
TALRLNEFCAARHITLEDQWQFAGQDISLAQILRDSQKHLPDGKPLLGVLHGDFCFSN
ILYDFRANKIKTIDPRGMTPDGQKTLYGDIRYDLAKLSHSILGLYDWIIAGYYHVEIA
DNAIELKIAEQSHHKETQQGFIELIEQTFGLTAKNLYAMQIQLFLSMLPLHADDRRRQ
DALFANAFRLHQILLRLDQ"
gene complement(236923..237303)
/locus_tag="O3Y_01065"
/db_xref="GeneID:11913164"
CDS complement(236923..237303)
/locus_tag="O3Y_01065"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332090.1"
/db_xref="GI:379740121"
/db_xref="GeneID:11913164"
/translation="MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIV
ISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAV
RPSEFASMNLEEIHQLFEKEKSCS"
misc_feature complement(<237040..237294)
/locus_tag="O3Y_01065"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(order(237160..237165,237277..237285))
/locus_tag="O3Y_01065"
/note="active site"
/db_xref="CDD:119389"
misc_feature complement(237268..237285)
/locus_tag="O3Y_01065"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature complement(237163..237165)
/locus_tag="O3Y_01065"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(237300..238580)
/locus_tag="O3Y_01070"
/db_xref="GeneID:11913165"
CDS complement(237300..238580)
/locus_tag="O3Y_01070"
/note="COG1519 3-deoxy-D-manno-octulosonic-acid
transferase"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_005332091.1"
/db_xref="GI:379740122"
/db_xref="GeneID:11913165"
/translation="MLLRTLYTLLLTLAAPFLLYGLYRRRQGKPSVGKRWKEHFGITP
PLKTTTPPIWIHAASVGETLAVTPLIKQIKQRSPNTPILLTTTTPTGAEQAEKLADWV
EHRYTPIDFSFAVRGFLRRVRPCQLIIVETELWPNTLHTVAKAGLPITLVNARLSEKS
YRGYQRIHPFFNSMAKPLSLVLCQFADDAQRFIQLGVAETKIKITGSIKFDINITYEV
IAQGEALRTALGKHRPVWIAASTHQGEDEIVLAAHQEILKQHPNALLILVPRHPERFA
AVHKLAASLFSVQTRSSQQTITSDTQVYLGDTMGEMLVLLGASDVCFMGGSLVGKKVG
GHNLLEPAALAKPIVTGPSFYNFTDITHALINAHACVIADQPETIAKQVNHWFSDAQE
RQQCGKNALAIVMQNRGALENTLTELGFTKEFAQ"
misc_feature complement(237327..238514)
/locus_tag="O3Y_01070"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:235589"
misc_feature complement(237939..238481)
/locus_tag="O3Y_01070"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:218074"
misc_feature complement(237381..237857)
/locus_tag="O3Y_01070"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:245227"
gene complement(238580..239362)
/locus_tag="O3Y_01075"
/db_xref="GeneID:11913166"
CDS complement(238580..239362)
/locus_tag="O3Y_01075"
/note="COG3774 Mannosyltransferase OCH1 and related
enzymes"
/codon_start=1
/transl_table=11
/product="mannosyltransferase OCH1-like enzyme"
/protein_id="YP_005332092.1"
/db_xref="GI:379740123"
/db_xref="GeneID:11913166"
/translation="MSKVTVLIANRLIRLTGNLFKMLSYPFHWVFPKLRFTIPAYSPA
KLKMRANATIPRTIWQTNFTDQASLPVYLNYLFNRLMSLNCDYRYVSTEARGEFLKEH
TSPEVYDAYSRLTNGAAQADLWRLVVLNTYGGVYMDIDATLVWPLDKLLGDSQELYIR
IKNNTEITNYFIATAPNNPDLQATIEQVVYNVNHYEPSMGVYHSTGPTVLNNILSAKA
VIHTQDRKYVCIQGTFTNEHFQYIDKPRGKWTHINPEDLVKK"
misc_feature complement(238583..239362)
/locus_tag="O3Y_01075"
/note="Mannosyltransferase OCH1 and related enzymes [Cell
envelope biogenesis, outer membrane]; Region: OCH1;
COG3774"
/db_xref="CDD:226297"
misc_feature complement(238898..239155)
/locus_tag="O3Y_01075"
/note="Glycosyltransferase sugar-binding region containing
DXD motif; Region: Gly_transf_sug; pfam04488"
/db_xref="CDD:218109"
gene complement(239365..240414)
/locus_tag="O3Y_01080"
/db_xref="GeneID:11913167"
CDS complement(239365..240414)
/locus_tag="O3Y_01080"
/note="COG0859 ADP-heptose:LPS heptosyltransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332093.1"
/db_xref="GI:379740124"
/db_xref="GeneID:11913167"
/translation="MKHLWFEKGAYASKAARQYLNDHFNPLAVKKTAVIRHAALGDQV
IVRPFLVEARKFFPNAEITLVTVSNYLYGTPSDLADKTVIMKSRDDSKQLSLRQKWQD
YNQLEAQDIIFDVAGTNRSYWMTLLTKAKLKVGFPYKPFLCGTLYNLAVFRSDFQPEV
ECMLDMLKILGHNPSYPLDFAYPDNRQICDHAAPYIVYFSGASQLRKILTKPEMRAVI
EQTIQQQPNVKHVFLEGKNEFEKGEYLQDLADNGSLTIQPCLPLDDLVTFIAKATLVI
APDTGIRNVAISTHTPTVGIFYATVPFRYTPLYEAHTIVMNANGEKPSTEQITSAIDT
TLKMRLAAAKNTQEQ"
misc_feature complement(239368..240330)
/locus_tag="O3Y_01080"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature complement(239470..240324)
/locus_tag="O3Y_01080"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(239560..239562,239569..239574,
239581..239583,239617..239622,239716..239718,
239818..239823))
/locus_tag="O3Y_01080"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(240411..241448)
/locus_tag="O3Y_01085"
/db_xref="GeneID:11913168"
CDS complement(240411..241448)
/locus_tag="O3Y_01085"
/note="COG0859 ADP-heptose:LPS heptosyltransferase"
/codon_start=1
/transl_table=11
/product="ADP-heptose--LPS-heptosyltransferase II"
/protein_id="YP_005332094.1"
/db_xref="GI:379740125"
/db_xref="GeneID:11913168"
/translation="MKILVIGPSWVGDMVMSQSLYQRLKQQHPDAQIDVLAPAWCKPI
LERMPEVNQAIEMTIGHGAFNLLGRRAIGCELRDNRYTHAIVLPNSAKSALIPWFANI
PKRTGWKGEFRYGLLNDLRPDKRVFQYMVERYVALAHPKATMLADVSLEHCPRPKLVI
DAIVQQAARQRLSLVSSRPVIGLCPGAEFGPAKRWPDHYYAEVARYAIEQGFQVWLFG
SAKDHSVTTQIQQALSEEQREYCANLAGETSLIEAVDLLAACHTVVSNDSGLMHVSAA
VGCNIVAIYGSSSPKYTPPLTDKLAVVHTEIECRPCFKRVCPLEHLNCLNQLKPAQVI
KALDKFIGKDS"
misc_feature complement(240414..241448)
/locus_tag="O3Y_01085"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature complement(240432..241445)
/locus_tag="O3Y_01085"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(240630..240632,240639..240644,
240651..240653,240687..240692,240798..240800,
240897..240899,241038..241040))
/locus_tag="O3Y_01085"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(241448..242647)
/locus_tag="O3Y_01090"
/db_xref="GeneID:11913169"
CDS complement(241448..242647)
/locus_tag="O3Y_01090"
/note="COG3307 Lipid A core - O-antigen ligase and related
enzymes"
/codon_start=1
/transl_table=11
/product="O-antigen ligase"
/protein_id="YP_005332095.1"
/db_xref="GI:379740126"
/db_xref="GeneID:11913169"
/translation="MNNKITKTSIFLTISLLLITPGFSVVAVGLLTLYSSVKLIKNGL
NLNKFDIIPLITLSAYFLSNLPITIIDGDTLRYLDAGIRALLCIPMYFFIKNEISKGA
NLDNTLCTSTILASFGALAFAFYQFFILNMPRVDGFLFSINFGYLAAALAILSFGLSF
TQTRFKYYLYLSVVAATVATILTLTRGAILTLLFVFILFFIVNVRKIKFKQTLVFTLI
SFLLVSVSYQFSPRIQERVDFTIFEISSIASNNIHAAASSGGRLQLWYAAVEAFKHNP
IWGTTYSERESLNIELFKEGKVDEWTSTVPRGHAHSQYFEAIASNGTLGILAIFAMLI
LPFGVFLNDYRKTGSPISQTGYLFAFGFIIFCLTEAPLQANLIGTFYGFMVAIFYAYI
AAKRAKN"
misc_feature complement(241454..242587)
/locus_tag="O3Y_01090"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:225844"
misc_feature complement(241658..>242035)
/locus_tag="O3Y_01090"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:218334"
gene complement(242649..243209)
/locus_tag="O3Y_01095"
/db_xref="GeneID:11913170"
CDS complement(242649..243209)
/locus_tag="O3Y_01095"
/note="COG0110 Acetyltransferase (isoleucine patch
superfamily)"
/codon_start=1
/transl_table=11
/product="hexapaptide repeat-containing transferase"
/protein_id="YP_005332096.1"
/db_xref="GI:379740127"
/db_xref="GeneID:11913170"
/translation="MAGFGLIAKLRNKIRVKPNNKIQIGKNTRIRYCDIYVNGNNNQL
IIHNGANLKGVSIELNGNNCLLEIGENCVIGENCFLSCRESGTKLVIGKECMFSRNVK
LMTSDGHDILRDGKRINPAKSIYIGSHVWLADNVTILKGVDIGSGSIIGINSTVTKSI
GQYCIAAGNPARKIKDNISWNTTLSY"
misc_feature complement(242685..243206)
/locus_tag="O3Y_01095"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:223188"
misc_feature complement(242688..243014)
/locus_tag="O3Y_01095"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature complement(order(242703..242705,242751..242753,
242808..242810,242817..242819,242823..242825,
242877..242885,242904..242906,242922..242924,
242928..242930,242967..242969,242991..242993,
242997..242999))
/locus_tag="O3Y_01095"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature complement(order(242700..242702,242706..242711,
242736..242741,242754..242759,242793..242795,
242808..242813,242817..242819,242877..242879,
242883..242885,242985..242987,242991..242993))
/locus_tag="O3Y_01095"
/note="active site"
/db_xref="CDD:100053"
misc_feature complement(order(242883..242885,242985..242987,
242991..242993))
/locus_tag="O3Y_01095"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature complement(order(242688..242690,242700..242702,
242706..242711,242715..242717,242736..242741,
242754..242759,242763..242765,242793..242795,
242808..242813,242817..242819,242877..242879,
242883..242885))
/locus_tag="O3Y_01095"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
gene complement(243223..244995)
/locus_tag="O3Y_01100"
/db_xref="GeneID:11913171"
CDS complement(243223..244995)
/locus_tag="O3Y_01100"
/note="COG0438 Glycosyltransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332097.1"
/db_xref="GI:379740128"
/db_xref="GeneID:11913171"
/translation="MNILMALSQLEVTGAEVYATSVGNELTRRGHQVFYVSDTLTKAH
DGLFFKLRFNKRSIPRRFWHVAYLVYLIKKHQIQLVHAHSRASSWSCHIACRLTNTPM
VTTVHGRQPVHVSRKKFHAMGDKALPVCEAIREQLIKDLNVPESQLHVSRNGIETSIF
KRSAAPNNPKPVISIIGRLSGPKGELCYRLLTECLDLDRYQVQVITGTPLTERFSALQ
DKVSFPGYSANVEQIMAQSDLVIGAGRVAMEALLCGRPTLAIGEASCVGIIELDNLNQ
AMATNFGDIGPHDLAIDFQQIPALIEQGLSQPHCTQEITEQIKLNYDLQVIVNELENL
YQTFYVNKLQREVPIIMYHRFIRDDSEKGVHGTYLHVQQLEKHFQLLKKMGFETLTFK
DLSEKGFIHRLQPGKRFIIITVDDGYRDNYDLLLPLLKKYQFKAVVYVVTGENFNRWD
VEVSDNPEKVVPLMSPEQVKALHDSGLVEIGGHTMTHPFLSKLSESEQREEILRNKLE
LEALIGEPLTSFAYPYGDHDATSKQLAQDLGYPFAVATNSGPLLMHQDPYQIRRIAIF
PRTDTFGLWRKVKGNYLFRKMNKK"
misc_feature complement(244024..244995)
/locus_tag="O3Y_01100"
/note="This family is most closely related to the GT1
family of glycosyltransferases. WavL in Vibrio cholerae
has been shown to be involved in the biosynthesis of the
lipopolysaccharide core; Region: GT1_WavL_like; cd03819"
/db_xref="CDD:99989"
misc_feature complement(244513..244989)
/locus_tag="O3Y_01100"
/note="Glycosyltransferase Family 4; Region:
Glyco_transf_4; pfam13439"
/db_xref="CDD:222130"
misc_feature complement(order(244246..244248,244306..244308,
244462..244470,244954..244956))
/locus_tag="O3Y_01100"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99989"
misc_feature complement(<243364..243954)
/locus_tag="O3Y_01100"
/note="Predicted xylanase/chitin deacetylase [Carbohydrate
transport and metabolism]; Region: CDA1; COG0726"
/db_xref="CDD:223798"
misc_feature complement(243292..243768)
/locus_tag="O3Y_01100"
/note="Putative catalytic NodB homology domain of PgaB,
IcaB, and similar proteins which consist of a deformed
(beta/alpha)8 barrel fold with 5- or 6-strands; Region:
CE4_NodB_like_5s_6s; cd10918"
/db_xref="CDD:213023"
misc_feature complement(order(243421..243429,243535..243537,
243547..243549,243748..243753))
/locus_tag="O3Y_01100"
/note="putative active site [active]"
/db_xref="CDD:213023"
misc_feature complement(order(243535..243537,243547..243549,
243748..243750))
/locus_tag="O3Y_01100"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:213023"
gene complement(245154..246098)
/gene="rfaD"
/locus_tag="O3Y_01105"
/db_xref="GeneID:11913172"
CDS complement(245154..246098)
/gene="rfaD"
/locus_tag="O3Y_01105"
/EC_number="5.1.3.20"
/note="COG0451 Nucleoside-diphosphate-sugar epimerases"
/codon_start=1
/transl_table=11
/product="ADP-L-glycero-D-manno-heptose-6-epimerase"
/protein_id="YP_005332098.1"
/db_xref="GI:379740129"
/db_xref="GeneID:11913172"
/translation="MIIVTGGAGMIGSNIIKALNERGITDILVVDHLKNGRKFKNLVD
LQIADYMDRDDFLAQIMAGDDFGFIDAIFHEGACSATTEWDGKYVMLNNYEYSKELLH
YCLDREIPFLYASSAATYGETDTFIEEPQYEGALNVYGYSKQQFDNYVRRLWLDAKQH
DETLSQITGFRYFNVYGPREQHKGSMASVAFHLNNQMNAGENPKLFAGSENFKRDFVY
VGDVAAVNLWFLDHGVSGIFNCGTGKAESFNEVAKAVIAFHGRGEVETIPFPDHLKGA
YQEFTEADLTKLRAAGCDVQFKSVAEGVAEYMALINRK"
misc_feature complement(245160..246098)
/gene="rfaD"
/locus_tag="O3Y_01105"
/note="ADP-L-glycero-D-mannoheptose 6-epimerase (GME),
extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248"
/db_xref="CDD:187559"
misc_feature complement(245160..246098)
/gene="rfaD"
/locus_tag="O3Y_01105"
/note="ADP-L-glycero-D-mannoheptose-6-epimerase;
Provisional; Region: rfaD; PRK11150"
/db_xref="CDD:182998"
misc_feature complement(order(245550..245555,245574..245576,
245580..245585,245670..245672,245682..245684,
245751..245759,245811..245813,245823..245825,
245835..245837,245862..245864,245868..245876,
245940..245942,245985..245987,246003..246011,
246066..246074,246081..246086))
/gene="rfaD"
/locus_tag="O3Y_01105"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187559"
misc_feature complement(order(245643..245645,245652..245657,
245664..245666,245676..245678,245685..245699,
245805..245807,245817..245819,245829..245831,
245838..245849,245943..245945,245949..245966,
245970..245975,245982..245984,245988..245993,
245997..246002))
/gene="rfaD"
/locus_tag="O3Y_01105"
/note="homopentamer interface [polypeptide binding]; other
site"
/db_xref="CDD:187559"
misc_feature complement(order(245355..245357,245457..245459,
245523..245525,245532..245534,245538..245546,
245577..245579,245856..245858))
/gene="rfaD"
/locus_tag="O3Y_01105"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187559"
misc_feature complement(order(245670..245672,245682..245684,
245751..245753,245820..245822))
/gene="rfaD"
/locus_tag="O3Y_01105"
/note="active site"
/db_xref="CDD:187559"
gene 246651..247937
/locus_tag="O3Y_01110"
/db_xref="GeneID:11913173"
CDS 246651..247937
/locus_tag="O3Y_01110"
/note="COG0836 Mannose-1-phosphate guanylyltransferase"
/codon_start=1
/transl_table=11
/product="mannose-1-phosphate guanylyltransferase"
/protein_id="YP_005332099.1"
/db_xref="GI:379740130"
/db_xref="GeneID:11913173"
/translation="MLQATIERLQGLPIAEPIVISNEDHRFIVAEQIRRYGKKSRIIL
EPAGRNTAPAIALAAFTAIEQEDDPVLLVLAADHFVKNKSAFQAAISQAAQQAEAGKL
ATFGIVPTTPETGYGYIHRGEEVTQGTYEINSFVEKPQLNIAEQYLASGEYYWNSGCF
MFKASVFLNELKQHSPEIYRQCELAMQGLSHDYDFIRVGVEEFLKCPDDSIDYAVMEH
TKLGVVVSMDAGWSDVGSWSALWEVSDKDADGNVCQGDAILSGTSNCYIYAPNKLVAA
VGLKDIVVVETKDAVLVADKNQVQEVKKIVEHLKAENRAEYREHRERYRPWGKSDAID
KGERYKVNRITVEPGKKQSLQMHYHRAEHWVVVSGTAKVTCEGNVKVITENQSLYIPI
GTNHMIENPGKIPLELIEIQSGSYLNEDDVVRFEDK"
misc_feature 246651..247934
/locus_tag="O3Y_01110"
/note="mannose-1-phosphate
guanylyltransferase/mannose-6-phosphate isomerase; Region:
GMP_PMI; TIGR01479"
/db_xref="CDD:233431"
misc_feature 246651..247370
/locus_tag="O3Y_01110"
/note="GDP-M1P_Guanylyltransferase catalyzes the formation
of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase;
cd02509"
/db_xref="CDD:133003"
misc_feature 247479..247931
/locus_tag="O3Y_01110"
/note="Mannose-6-phosphate isomerase; Region:
MannoseP_isomer; pfam01050"
/db_xref="CDD:144587"
gene 247940..249331
/locus_tag="O3Y_01115"
/db_xref="GeneID:11913174"
CDS 247940..249331
/locus_tag="O3Y_01115"
/note="COG1109 Phosphomannomutase"
/codon_start=1
/transl_table=11
/product="phosphomannomutase"
/protein_id="YP_005332100.1"
/db_xref="GI:379740131"
/db_xref="GeneID:11913174"
/translation="MKELTCFKAYDIRGQLGSELDNEIAYRIGRSYGQFLKSENDADK
TVVVGGDVRLTSEALKQALANGLMDAGINVIDIGVTGTEEIYFATFYLGVDGGIEVTA
SHNPMDYNGMKLVREGSKPISGDTGLREIQALAEKNEFMDVEVKGNYKKVSLLPEYVD
HLISYITPAKIKPMKLVINSGNGAAGHVIDELEKRFIELSIPLEIIKVHHEEDGNFPN
GIPNPLLPECRADTANAVKEHKADMGIAFDGDFDRCFLFDENGDFIEGYYIVGLLAEA
FLQKEQGAKIIHDPRLSWNTIDVVTKSGGVPVMSKTGHAFIKERMRKEDAIYGGEMSA
HHYFRDFGYCDSGMIPWLLITELLSLAPDISLSKLISAKRFLFPCSGEINFKVKQAKL
IMEQVYLHYYENSIHFSAIDGISLEFEGWRFNLRDSNTEPLLRLNVESKQNIALMNDK
VEELTKLIKKLDI"
misc_feature 247940..249319
/locus_tag="O3Y_01115"
/note="phosphomannomutase CpsG; Provisional; Region:
PRK15414"
/db_xref="CDD:185312"
misc_feature 247955..249313
/locus_tag="O3Y_01115"
/note="The phosphomannomutase/phosphoglucomutase (PMM/PGM)
bifunctional enzyme catalyzes the reversible conversion of
1-phospho to 6-phospho-sugars (e.g. between
mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a...;
Region: PMM_PGM; cd03089"
/db_xref="CDD:100091"
misc_feature order(247961..247963,247967..247969,247976..247978,
248246..248254,248276..248278,248681..248683,
248687..248689,248693..248698,248810..248812,
248873..248881,248930..248932,248936..248938,
248942..248944,249215..249217,249221..249229)
/locus_tag="O3Y_01115"
/note="active site"
/db_xref="CDD:100091"
misc_feature order(247967..247969,247976..247978,248246..248248,
248696..248698,248810..248812,248873..248875,
248879..248881,248930..248932,248936..248938,
248942..248944,249215..249217,249221..249229)
/locus_tag="O3Y_01115"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100091"
misc_feature order(248246..248248,248681..248683,248687..248689,
248693..248695)
/locus_tag="O3Y_01115"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100091"
gene 249334..250455
/locus_tag="O3Y_01120"
/db_xref="GeneID:11913175"
CDS 249334..250455
/locus_tag="O3Y_01120"
/note="COG1089 GDP-D-mannose dehydratase"
/codon_start=1
/transl_table=11
/product="GDP-mannose 4,6-dehydratase"
/protein_id="YP_005332101.1"
/db_xref="GI:379740132"
/db_xref="GeneID:11913175"
/translation="MNKKVALITGITGQDGSYLAEFLLEKGYEVHGIKRRSSLFNTQR
VDHLYKDPHEEDVNFKLHYGDLTDSSNLTRILAEVQPDEVYNLGAQSHVAVSFQSPEY
TADVDAIGTLRLLEAIRFLGLTKKTKFYQASTSELYGLVQEIPQKETTPFYPRSPYAV
AKMYAYWITINYRESYGIYACNGILFNHESPRRGETFVTRKITRGMANIAQGLEKCLF
MGNLDALRDWGHAKDYVKMQWMMLQQDEPRDFVIATGVQYSVREFIDMSARELGIELE
FVGKGVDEKAVVKSVIGTKAPAIKVGDIIVAVDPAYFRPAEVETLLGDPSLAKKELGW
VPEITLQQMVSEMVASDLEQAQSHALLKKHGYNVNVSVE"
misc_feature 249340..250407
/locus_tag="O3Y_01120"
/note="GDP-D-mannose dehydratase [Cell envelope
biogenesis, outer membrane]; Region: Gmd; COG1089"
/db_xref="CDD:224014"
misc_feature 249346..250392
/locus_tag="O3Y_01120"
/note="GDP-mannose 4,6 dehydratase, extended (e) SDRs;
Region: GDP_MD_SDR_e; cd05260"
/db_xref="CDD:187570"
misc_feature order(249361..249378,249436..249444,249523..249531,
249592..249600,249604..249606,249649..249651,
249727..249735,249805..249807,249817..249819,
249886..249900)
/locus_tag="O3Y_01120"
/note="NADP-binding site; other site"
/db_xref="CDD:187570"
misc_feature order(249367..249372,249436..249453,249460..249465,
249520..249528,249532..249546,249550..249558,
249562..249564,249598..249609,249616..249618,
249622..249633,249643..249648,249658..249660,
249667..249672,249679..249681,249688..249693,
249784..249795,249799..249804,249811..249816,
249820..249825,249832..249837,249841..249849,
249853..249861,249919..249924,250276..250281)
/locus_tag="O3Y_01120"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(249604..249612,249733..249741,249805..249807,
249892..249894,249919..249927,249934..249936,
249985..249996,250003..250005,250009..250011,
250111..250113,250267..250269,250273..250275,
250282..250287)
/locus_tag="O3Y_01120"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(249622..249624,249631..249633,249643..249648,
249655..249660,249667..249672,249679..249681,
249784..249795,249799..249804,249811..249816,
249820..249825,249832..249837,249841..249849,
249853..249861,250276..250281)
/locus_tag="O3Y_01120"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(249652..249654,249733..249735,249805..249807,
249817..249819)
/locus_tag="O3Y_01120"
/note="active site"
/db_xref="CDD:187570"
gene 250466..251569
/locus_tag="O3Y_01125"
/db_xref="GeneID:11913176"
CDS 250466..251569
/locus_tag="O3Y_01125"
/note="COG0399 Predicted pyridoxal phosphate-dependent
enzyme apparently involved in regulation of cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="perosamine synthase"
/protein_id="YP_005332102.1"
/db_xref="GI:379740133"
/db_xref="GeneID:11913176"
/translation="MIPVYEPSLDGNERKYLNDCIDSGWVSSRGKYIDRFETEFAEFL
KVKHATTVSNGTVALHLAMSALGITQGDEVIVPTFTYVASVNTIVQCGALPVFAEIEG
ESLQVSVEDVKRKINKKTKAVMAVHIYGQACDIQSLRDLCDEHGLYLIEDCAEAIGTA
VNGKKVGTFGDVSTFSFFGNKTITSGEGGMVVSNSDIIIDKCLRLKNQGVVAGKRYWH
DLVAYNYRMTNLCAAIGVAQLERVDKIIKRKRDIAEIYRSELAGLPMQVHKESNGTFH
SYWLTSIILDQEFEVHRDGLMTFLENNDIESRPFFYPAHTLPMYEHLAEKTAFPLSNS
YSHRGINLPSWPGLCDDQVKEICNCIKNYFNCI"
misc_feature 250466..251566
/locus_tag="O3Y_01125"
/note="Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall biogenesis
[Cell envelope biogenesis, outer membrane]; Region: WecE;
COG0399"
/db_xref="CDD:223476"
misc_feature 250502..251548
/locus_tag="O3Y_01125"
/note="3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The members of this CD are involved in various
biosynthetic pathways for secondary...; Region: AHBA_syn;
cd00616"
/db_xref="CDD:99740"
misc_feature order(250628..250633,250919..250921,250928..250930,
250991..250993,251003..251008,251393..251395)
/locus_tag="O3Y_01125"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99740"
misc_feature order(250628..250633,250703..250705,250919..250921,
250928..250930,250991..250993,251006..251008)
/locus_tag="O3Y_01125"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99740"
misc_feature 251006..251008
/locus_tag="O3Y_01125"
/note="catalytic residue [active]"
/db_xref="CDD:99740"
gene 251575..252957
/locus_tag="O3Y_01130"
/db_xref="GeneID:11913177"
CDS 251575..252957
/locus_tag="O3Y_01130"
/note="COG0438 Glycosyltransferase"
/codon_start=1
/transl_table=11
/product="rfbG protein"
/protein_id="YP_005332103.1"
/db_xref="GI:379740134"
/db_xref="GeneID:11913177"
/translation="MTEKKKLVVWVPLPPNSSWRGEGIAQTIENIVRNISPERKIEIV
VSSKHAEMLVGLEKSNPNISVLTLGFRGKSTKKTIGYVSLNEVEKDSLWDLVIAKLPI
IPAIFRKVGMYVSQLEYLLSLYIYSHLQRRGRFSSNNCRVWLPTPIIPYTHLLGGEKF
VSFWDPFVFEYNKEFPLTAEYFVKKLSKHFSNASAIITQSRANKDYLETVMGIESSKI
NVIYNGSPDYSEFKKQQSNLSFSEVWSKSEFSGASKKAAFEALVNHQLNFSVLWRLLT
KNKVSNRKIVLISTQNRPYKGFDQLFVLINELCLRRDNYDFIFTCNVPTKLKERYPSL
YERIHEVTRVDNYLHASLYLMSDIVLHPSNVEGGLGAYPQYEASSVGKPSLINTGRHV
NEMAEEGFDVDLLSSNFVNTKETVDKIEKLINSEEYMRQNIDAINRLKISWKESASNY
ENVFFGNENA"
misc_feature 251758..252936
/locus_tag="O3Y_01130"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
misc_feature <252142..>252246
/locus_tag="O3Y_01130"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:245227"
misc_feature 252418..252879
/locus_tag="O3Y_01130"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:245227"
gene 252929..253723
/locus_tag="O3Y_01135"
/db_xref="GeneID:11913178"
CDS 252929..253723
/locus_tag="O3Y_01135"
/note="COG1682 ABC-type polysaccharide/polyol phosphate
export systems, permease component"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide/O-antigen transport protein"
/protein_id="YP_005332104.1"
/db_xref="GI:379740135"
/db_xref="GeneID:11913178"
/translation="MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWL
SITMFVQILCIGLIWSLIWRMGVDDYLPYVGVGHIIYLFYTQTINESTGIFVADARVY
LNDRQPFMLSVGAHIYRNVLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFV
LFASYFCAVISTRFRDLIQLIGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLL
ELIRNPIIGIDVNPLAFVSLVAWTFIIGMVSYFSYKVLDKKVIFWV"
misc_feature 252935..253720
/locus_tag="O3Y_01135"
/note="ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagG; COG1682"
/db_xref="CDD:224596"
gene 253851..254477
/locus_tag="O3Y_01140"
/db_xref="GeneID:11913179"
CDS 253851..254477
/locus_tag="O3Y_01140"
/note="COG1134 ABC-type polysaccharide/polyol phosphate
transport system, ATPase component"
/codon_start=1
/transl_table=11
/product="O-antigen export system ATP-binding protein"
/protein_id="YP_005332105.1"
/db_xref="GI:379740136"
/db_xref="GeneID:11913179"
/translation="MKYVHALRDINLKLEDSSRLGIIGHNGAGKTTLLRLLSQVYPPT
SGKVTIEGKISALTDFTLGMDPNATGLKNIEFRLVFMGCTFKEAQQAVEEIVAFSELG
EFINLPVRTYSTGMFLRLAFAISTHFTPDILILDEVIGAGDETFREKALSRLESLIKK
SRMVVLSSHDLNAIKQYCDQAIVMEKGEIVFNGTPQSCIDYYLNSVKK"
misc_feature 253851..254429
/locus_tag="O3Y_01140"
/note="ATP-binding cassette component of polysaccharide
transport system; Region: ABC_KpsT_Wzt; cd03220"
/db_xref="CDD:213187"
misc_feature 253854..254417
/locus_tag="O3Y_01140"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:31331"
misc_feature 253920..253943
/locus_tag="O3Y_01140"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213187"
misc_feature order(253929..253934,253938..253946,254148..254150,
254256..254261,254355..254357)
/locus_tag="O3Y_01140"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213187"
misc_feature 254139..254150
/locus_tag="O3Y_01140"
/note="Q-loop/lid; other site"
/db_xref="CDD:213187"
misc_feature 254184..254213
/locus_tag="O3Y_01140"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213187"
misc_feature 254244..254261
/locus_tag="O3Y_01140"
/note="Walker B; other site"
/db_xref="CDD:213187"
misc_feature 254268..254279
/locus_tag="O3Y_01140"
/note="D-loop; other site"
/db_xref="CDD:213187"
misc_feature 254343..254363
/locus_tag="O3Y_01140"
/note="H-loop/switch region; other site"
/db_xref="CDD:213187"
gene 254525..254758
/locus_tag="O3Y_01145"
/db_xref="GeneID:11913180"
CDS 254525..254758
/locus_tag="O3Y_01145"
/note="COG0236 Acyl carrier protein"
/codon_start=1
/transl_table=11
/product="acyl carrier protein"
/protein_id="YP_005332106.1"
/db_xref="GI:379740137"
/db_xref="GeneID:11913180"
/translation="MSISEEKIINLIAGILEVEIGIINKELAVGDIPEWDSLAHMRII
AALESDLGVVLDIEQVLEIEDVEDIIDAVINNE"
misc_feature 254525..>254689
/locus_tag="O3Y_01145"
/note="Phosphopantetheine attachment site; Region:
PP-binding; cl09936"
/db_xref="CDD:245209"
gene 254764..256179
/locus_tag="O3Y_01150"
/db_xref="GeneID:11913181"
CDS 254764..256179
/locus_tag="O3Y_01150"
/note="COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid
ligases II"
/codon_start=1
/transl_table=11
/product="rfbL protein"
/protein_id="YP_005332107.1"
/db_xref="GI:379740138"
/db_xref="GeneID:11913181"
/translation="MSVVERIFNHSESRPDCIAVYENDRTISYENLASDIKKTAAKLV
SLGVTSEDAVLVRSNNSYSFILLYFSIHYVGAKFVNVAPDSDVSYVSFIEDKVNPKLF
IEKSQDFIRNIDSYTFDNIFPPQARGIADIMFTSGTTGEPKGVLLSHKSLVLATEHII
SHVKNTNEDVELLLMPLSHSFAMARMRTSLFAGGAIVVGCSFKQLKSVFKAIEFYKVT
GLGLVPSAWSYITLMTKDLIRKYSEQLNFIEFGSAHFPFEDKKQVAEWFPNTNVVMHY
GLTEVSRATFIDFHNDDINAVGHRYRGADFKIIDNKGAEVIEGEEGEIVFKAPWMLDG
YFENSQLTSDCFVEGYFKTGDLGRVVGDYLFLTGRLKEIINVGGKKVSPDQVEKVLSE
ALGVQECACAALSDANMGEVVQAYIVVKSGWDCENVISNIKETINGQLPMHMRPKKYS
IVSALPKTVSGKVQRYKLSSE"
misc_feature 254764..256167
/locus_tag="O3Y_01150"
/note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites biosynthesis,
transport, and catabolism]; Region: CaiC; COG0318"
/db_xref="CDD:223395"
misc_feature 254815..>255315
/locus_tag="O3Y_01150"
/note="Adenylate forming domain, Class I; Region:
AFD_class_I; cl17068"
/db_xref="CDD:247692"
misc_feature 255148..256167
/locus_tag="O3Y_01150"
/note="Adenylate forming domain, Class I; Region:
AFD_class_I; cl17068"
/db_xref="CDD:247692"
misc_feature order(255157..255159,255166..255183,255187..255192)
/locus_tag="O3Y_01150"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213270"
misc_feature order(255157..255159,255166..255183,255187..255192)
/locus_tag="O3Y_01150"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213270"
misc_feature order(255166..255168,255514..255519,255583..255600,
255826..255828,255859..255861,255868..255870,
255901..255903,256147..256149)
/locus_tag="O3Y_01150"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213270"
misc_feature order(255166..255168,255286..255291,255430..255432,
255436..255441,255454..255456,255514..255519,
255583..255600,255826..255828,255859..255861,
255868..255870,255892..255903,256090..256092)
/locus_tag="O3Y_01150"
/note="active site"
/db_xref="CDD:213270"
misc_feature order(255286..255288,255436..255441,255454..255456,
255514..255516,255892..255900,256072..256074,
256090..256092)
/locus_tag="O3Y_01150"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:213270"
gene 256260..257312
/locus_tag="O3Y_01155"
/db_xref="GeneID:11913182"
CDS 256260..257312
/locus_tag="O3Y_01155"
/note="COG1454 Alcohol dehydrogenase, class IV"
/codon_start=1
/transl_table=11
/product="acetaldehyde dehydrogenase"
/protein_id="YP_005332108.1"
/db_xref="GI:379740139"
/db_xref="GeneID:11913182"
/translation="MALKGLVANRAALIISPSFGSSQYFEQVVRLINAQSVRVIERSW
QGEPSVEELSGVIGELEDFKPDYILALGGGSIIDGAKLAWLFYECPTLESELLYRPFA
LPSLRGRAKFAAIPTTVGAGSEVSSAAVMLDSVTNSKKAVVTHDFLPDLVILDPDLVS
EVPPKVLKTTVADALSHAIEGYVSLIDNPLMNTFAEQAVSIIYRYRHQFSNDNWSSEM
LSELQQAAMFAGWVQNHCIVGLSHAIAHQLGTFNIGHGLANGLLMPAVINFNYREHTA
ATKYEQLIYKSGLPNKEALLELFEVLVGEQKTDMHFSEQQLTTIAENALLDPAAKSNP
VRFTENDVKEIVKQCL"
misc_feature 256263..257306
/locus_tag="O3Y_01155"
/note="Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH); Region:
DHQ_Fe-ADH; cl02872"
/db_xref="CDD:243222"
misc_feature 256266..257309
/locus_tag="O3Y_01155"
/note="Alcohol dehydrogenase, class IV [Energy production
and conversion]; Region: EutG; COG1454"
/db_xref="CDD:224371"
misc_feature order(256305..256307,256476..256484,256491..256493,
256500..256502,256608..256613,256617..256619,
256674..256679,256731..256733,256755..256757,
256776..256778,256788..256790,256983..256985,
256995..256997,257022..257024)
/locus_tag="O3Y_01155"
/note="active site"
/db_xref="CDD:173927"
misc_feature order(256305..256307,256476..256484,256608..256613,
256617..256619,256731..256733,257022..257024)
/locus_tag="O3Y_01155"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:173927"
misc_feature order(256776..256778,256983..256985,257022..257024)
/locus_tag="O3Y_01155"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173927"
gene 257303..259780
/locus_tag="O3Y_01160"
/db_xref="GeneID:11913183"
CDS 257303..259780
/locus_tag="O3Y_01160"
/note="COG1541 Coenzyme F390 synthetase"
/codon_start=1
/transl_table=11
/product="acyl protein synthase/acyl-CoA reductase RfbN"
/protein_id="YP_005332109.1"
/db_xref="GI:379740140"
/db_xref="GeneID:11913183"
/translation="MPVNNENLTSVLDARPFELSEEQKSPLFKANLLAELVHHYQCNE
MYRKFCQKNKFDPLVFDGEVADIPPIPVHIFKAIGHKLSSVSDDTIKAKLQSSATSGV
PSTILLDKVTARRQTRAMARVMQEVLGPKRRPFCIMDIDPTSPNATNLGARIAAVKGY
LNFASTSKYFIDADSPSAPLEFLEQKFVEHLNSLASEEPLIIFGFTFVLYHTVFKTLK
DKGISFQLPKGSQVIHIGGWKKLESEKVDKITFNRDIASVLGISPDDVVDIYGFTEQM
GLNYPDCKAGWKHIHAYSDVIIRDESNLEVCGPGKVGLLEFVSPLPHSYPGNVVLTDD
LGVIEESLCECGKAGKRFKVIGRAKKAEVRGCGDVMSEKLTKKPSYKPLSQQEERLTI
YHSPIFLDDTMSASQQLDQIFCSLKRKQKWLANQPLEAILGLINEARKSWSSTPELDP
YRHTGLNFLADWCEPNRLKNLLDSALNGQRAFLDNFLPRKDISHSSQKAMPRGIVSHW
LSGNVPLLGMFALVQSILSKNANILKVSASESQALPVLLATFKGLSYTTPGGYTIHGD
DLLGTLAVVYFDRHQTKIAEKFSANADVRIAWGGREAIESVSGLPKKYNSQDILFGPK
LSMMVVGSDALDSDKAIRKLIRRAATDSSVFDQFACASPHTIFVEKGGLITPKEFAEK
LASAMDKALVRLPTQVPDIGQANKIRSKIAEYAFIGEYWHDKHLRWTVLFDEGIELVE
PTYQRVITVKAVDNVFDVVDSVHEDIQTVGLAMNGEKRLRFANEIMLKGAMRCPDVGY
MTHFDSPWDGVVALDRMVRWVTLGGPL"
misc_feature 257303..258427
/locus_tag="O3Y_01160"
/note="Acyl-protein synthetase, LuxE; Region: LuxE;
pfam04443"
/db_xref="CDD:113222"
misc_feature 258521..259759
/locus_tag="O3Y_01160"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:245815"
misc_feature 258569..259756
/locus_tag="O3Y_01160"
/note="Acyl-CoA reductase (LuxC); Region: LuxC; pfam05893"
/db_xref="CDD:218799"
misc_feature order(258824..258838,258857..258859,258902..258904,
258908..258913,259091..259102,259109..259111,
259118..259123,259163..259171,259280..259282,
259529..259531,259682..259684)
/locus_tag="O3Y_01160"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143395"
misc_feature order(258836..258838,259163..259165,259271..259273,
259280..259282)
/locus_tag="O3Y_01160"
/note="catalytic residues [active]"
/db_xref="CDD:143395"
gene 259850..260416
/locus_tag="O3Y_01165"
/db_xref="GeneID:11913184"
CDS 259850..260416
/locus_tag="O3Y_01165"
/note="COG0110 Acetyltransferase (isoleucine patch
superfamily)"
/codon_start=1
/transl_table=11
/product="galactoside O-acetyltransferase"
/protein_id="YP_005332110.1"
/db_xref="GI:379740141"
/db_xref="GeneID:11913184"
/translation="MSGNGYYSEDVLKQMGFSSLGKNVKISEKASLYGISRISIGSNV
RIDDYVTISAGVGGVEIGSHVHIGVYSSLIGAGKITLEDFVGVSGRVSIYSSSDDYTG
MAMSNPTVPEELTKVTSLPVLIKKHSILGAGCVVLPKVIVGEGVSVGALSLVNKSLDD
WHIYSGNPIQKFIRKARKPLELEKKLIL"
misc_feature 259850..260407
/locus_tag="O3Y_01165"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:223188"
misc_feature 260021..260353
/locus_tag="O3Y_01165"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature order(260039..260041,260045..260047,260069..260071,
260099..260101,260105..260107,260123..260125,
260141..260149,260228..260230,260234..260236,
260243..260245,260300..260302,260348..260350)
/locus_tag="O3Y_01165"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature order(260045..260047,260051..260053,260141..260143,
260147..260149,260234..260236,260240..260245,
260258..260260,260294..260299,260312..260317,
260342..260347,260351..260353)
/locus_tag="O3Y_01165"
/note="active site"
/db_xref="CDD:100053"
misc_feature order(260045..260047,260051..260053,260141..260143)
/locus_tag="O3Y_01165"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature order(260141..260143,260147..260149,260234..260236,
260240..260245,260258..260260,260288..260290,
260294..260299,260312..260317,260336..260338,
260342..260347,260351..260353)
/locus_tag="O3Y_01165"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
misc_feature 260804..261712
/note="potential frameshift: common BLAST hit:
gi|54302878|ref|YP_132871.1| RfbQRSO155-1"
gene 261725..261931
/locus_tag="O3Y_01180"
/db_xref="GeneID:11913185"
CDS 261725..261931
/locus_tag="O3Y_01180"
/note="COG5433 Transposase"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_005332111.1"
/db_xref="GI:379740142"
/db_xref="GeneID:11913185"
/translation="MDWSLDTAFCEDNSRIRADDRAEAFARIRQICLNLLKSEPTFKG
GIKRKRMNCAMNEKYLSKVLESLT"
gene 262067..262330
/locus_tag="O3Y_01185"
/db_xref="GeneID:11913186"
CDS 262067..262330
/locus_tag="O3Y_01185"
/codon_start=1
/transl_table=11
/product="RfbT-likeprotein"
/protein_id="YP_005332112.1"
/db_xref="GI:379740143"
/db_xref="GeneID:11913186"
/translation="MLFFTLILFKIEVVMKHLIKNYVQKLIKTELDAIQSKSVHDNRN
FIYNGEFLILESEFGWHCFPRVQLNHALSYKNPNCSGIVNLVT"
misc_feature 262109..>262300
/locus_tag="O3Y_01185"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene 262337..262681
/locus_tag="O3Y_01190"
/db_xref="GeneID:11913187"
CDS 262337..262681
/locus_tag="O3Y_01190"
/note="COG2963 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase OrfAB subunit A"
/protein_id="YP_005332113.1"
/db_xref="GI:379740144"
/db_xref="GeneID:11913187"
/translation="MISSPHKLTGDIMTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAA
QAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKA
TALLMSDSLNNS"
misc_feature 262373..262666
/locus_tag="O3Y_01190"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG2963"
/db_xref="CDD:32783"
misc_feature 262379..262609
/locus_tag="O3Y_01190"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 262678..263550
/locus_tag="O3Y_01195"
/db_xref="GeneID:11913188"
CDS 262678..263550
/locus_tag="O3Y_01195"
/note="COG2801 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase OrfAB subunit B"
/protein_id="YP_005332114.1"
/db_xref="GI:379740145"
/db_xref="GeneID:11913188"
/translation="MIIKKLKQSHSVKILCEVFNVHRSSYHYWLKRPALINAETIKLR
SLISEAHAASNGSAGARTIADIVTNQGVKLSRYRATKLMRTLGLVSCQEPKHRYRKAS
QEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLS
PDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCW
DNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESE
RLYWENSKTVANFS"
misc_feature 262732..263529
/locus_tag="O3Y_01195"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:222853"
misc_feature 262801..262977
/locus_tag="O3Y_01195"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:222019"
misc_feature 263038..263379
/locus_tag="O3Y_01195"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature 263293..263493
/locus_tag="O3Y_01195"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
gene 263574..264230
/locus_tag="O3Y_01200"
/db_xref="GeneID:11913189"
CDS 263574..264230
/locus_tag="O3Y_01200"
/note="COG0500 SAM-dependent methyltransferases"
/codon_start=1
/transl_table=11
/product="rfbT protein"
/protein_id="YP_005332115.1"
/db_xref="GI:379740146"
/db_xref="GeneID:11913189"
/translation="MRHWIVNHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPL
TEMENSIRMNVQLNNPLVEFHHFGCAIGENEGENIFEVYEFDNRVSSLYFSKNTDIAD
KVKNSQVLVRKLSSLDISPTNSVVIKIDAEGAEIEILNQIYEFTEKHNGIEYYICFEF
AMGHIQRSNRTFDEIFNIINSKFGSKAYFIHPLSSAEHPEFNKATQDINGNICFKYVS
"
misc_feature <263574..264227
/locus_tag="O3Y_01200"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(264265..265377)
/locus_tag="O3Y_01205"
/db_xref="GeneID:11913190"
CDS complement(264265..265377)
/locus_tag="O3Y_01205"
/note="COG0438 Glycosyltransferase"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide biosynthesis protein RfbV"
/protein_id="YP_005332116.1"
/db_xref="GI:379740147"
/db_xref="GeneID:11913190"
/translation="MKVLHVYRTCYPETKGGVEQVIRFIASGTKPLGIETKILTLSDN
QTSSYYCEGTEIISVKKSIEISSNGFSWKLIRQFKKLSKWADIIHYHYPWPTGDFLSL
FGSSNPSIVTYHSDIIRQKCLKKLYQPLESHFLNQANILVATSPQYAHTSENLLRHKN
KVKIIPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVLRYYKGLDFLLEAAKINQL
PVIIAGDGPERVKLESYIAKHNLENVKLVGFISEEDKVILHLLSKAFVFPSHLRSEAF
GISLIEAQMYCKAIISSDIGTGSSYVNINGETGLVVPPADSQSFSDAMLKIEHDTKLC
EKLGINARKRFEQEFTAHRYAQSYTKLYSELFGNVC"
misc_feature complement(264274..265377)
/locus_tag="O3Y_01205"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
misc_feature complement(264313..265374)
/locus_tag="O3Y_01205"
/note="This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can...; Region:
GT1_like_4; cd03795"
/db_xref="CDD:99969"
misc_feature complement(order(264541..264543,264613..264615,
264781..264789,265327..265329))
/locus_tag="O3Y_01205"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99969"
gene complement(265385..267250)
/locus_tag="O3Y_01210"
/db_xref="GeneID:11913191"
CDS complement(265385..267250)
/locus_tag="O3Y_01210"
/note="COG1086 Predicted nucleoside-diphosphate sugar
epimerases"
/codon_start=1
/transl_table=11
/product="mannosyl-transferase"
/protein_id="YP_005332117.1"
/db_xref="GI:379740148"
/db_xref="GeneID:11913191"
/translation="MFTPIQLLLSAQRHHKRMITLLYDVFALMFSLYAAIALRLDTLA
FTFSFPEFLSMMTTVGVTLYCFVRLGMYRAVLRYMMLPAIGYIFLSVIISAVTLALSG
FFFQAFIPRSVPFIYAGLATLTLGGPRIFIRTIYYHYYKRQKPNVFIYGAGSTGRDLA
YALIQGDEYHPVIFLDDDPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK
NTRIKLLERLSHWPIEIQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQ
KNITEKSVMVTGAGGSIGSELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLK
LNTKIVAALGSVQRENRVKKLMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTL
ACANAAIEAGVKNFTLISTDKAVRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFG
NVLGSSGSVVPLFKKQIRAGGPVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFV
LDMGEPVKIVDLAKRMIHLMGMKEFCDGRSDEGDIEIKFTGLRPGEKLYEELLIGENV
EGTSHQKIMTACEEKLSWDAMEDLLTELDVCCHNFDVECIKRILLDAPTGYSPQK"
misc_feature complement(265388..267196)
/locus_tag="O3Y_01210"
/note="Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: COG1086"
/db_xref="CDD:224011"
misc_feature complement(<266567..266806)
/locus_tag="O3Y_01210"
/note="Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes...; Region: LbetaH;
cl00160"
/db_xref="CDD:193687"
misc_feature complement(265526..266407)
/locus_tag="O3Y_01210"
/note="UDP-Glcnac (UDP-linked N-acetylglucosamine)
inverting 4,6-dehydratase, extended (e) SDRs; Region:
UDP_invert_4-6DH_SDR_e; cd05237"
/db_xref="CDD:187548"
misc_feature complement(order(265883..265888,265895..265906,
265976..265978,266024..266026,266093..266095,
266138..266140,266144..266152,266213..266221,
266309..266314,266372..266383,266387..266389))
/locus_tag="O3Y_01210"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187548"
misc_feature complement(order(265865..265867,265880..265885,
266096..266098,266105..266107,266114..266116,
266126..266128,266135..266146,266198..266200,
266207..266209,266216..266227,266279..266281,
266291..266293,266303..266305,266309..266311))
/locus_tag="O3Y_01210"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187548"
misc_feature complement(order(265589..265591,265598..265600,
265700..265702,265805..265807,265811..265813,
265823..265831,265862..265867,265874..265882,
265898..265903,265988..265990,266012..266020,
266138..266140))
/locus_tag="O3Y_01210"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187548"
misc_feature complement(order(265976..265978,265988..265990,
266018..266020,266090..266092))
/locus_tag="O3Y_01210"
/note="active site"
/db_xref="CDD:187548"
gene complement(267311..267427)
/locus_tag="O3Y_01215"
/db_xref="GeneID:11913192"
CDS complement(267311..267427)
/locus_tag="O3Y_01215"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332118.1"
/db_xref="GI:379740149"
/db_xref="GeneID:11913192"
/translation="MVFDYLVPSYPIFLQNYANDQHHESGKRYSSKLQFGRY"
gene 267403..268374
/locus_tag="O3Y_01220"
/db_xref="GeneID:11913193"
CDS 267403..268374
/locus_tag="O3Y_01220"
/note="COG0451 Nucleoside-diphosphate-sugar epimerases"
/codon_start=1
/transl_table=11
/product="UDP-glucose 4-epimerase"
/protein_id="YP_005332119.1"
/db_xref="GI:379740150"
/db_xref="GeneID:11913193"
/translation="MEPDNQTPLKILVTGASGFVGLRVLTQAQNIGYALVAQSRSQQP
YSFEQVLLDITPNTDWERALVGVDCVVHCAARVHQMQETEADALKAYRDVNTQGTLNL
AKQAVSAGVKRFIFLSSIKVNGEQTKAGSAFQHDDQHIPSDPYGLSKYEAEQQLLELA
AETGLEVVIIRPPLVYGEGVKANFLSMMNWVKKQIPLPLGAVGNMRSLVYLDNLVDLI
LVCCQHPKAAGEIFLVSDNHDVSLTTLLRTIAQAMQIRPRLLPIPQTGLQWLLRLLGK
PELGQRLCGNLQLDIAHTQKTLHWSPPVSFEQGIARTVNFYLSQSSK"
misc_feature 267430..268371
/locus_tag="O3Y_01220"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:223528"
misc_feature 267430..268341
/locus_tag="O3Y_01220"
/note="UDP-glucose 4 epimerase, subgroup 4, extended (e)
SDRs; Region: UDP_G4E_4_SDR_e; cd05232"
/db_xref="CDD:187543"
misc_feature order(267445..267447,267451..267462,267517..267525,
267619..267627,267682..267684,267751..267759,
267835..267837,267847..267849,267916..267927)
/locus_tag="O3Y_01220"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187543"
misc_feature order(267685..267687,267757..267759,267835..267837,
267847..267849)
/locus_tag="O3Y_01220"
/note="active site"
/db_xref="CDD:187543"
misc_feature order(267757..267759,267835..267837,267922..267924,
267961..267963,267991..267993,268018..268020)
/locus_tag="O3Y_01220"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187543"
gene 268382..268936
/locus_tag="O3Y_01225"
/db_xref="GeneID:11913194"
CDS 268382..268936
/locus_tag="O3Y_01225"
/note="COG2148 Sugar transferases involved in
lipopolysaccharide synthesis"
/codon_start=1
/transl_table=11
/product="lipid carrier :
UDP-N-acetylgalactosaminyltransferase"
/protein_id="YP_005332120.1"
/db_xref="GI:379740151"
/db_xref="GeneID:11913194"
/translation="MVIRFLDFIFALAGLLLLWPVLLIVCILGYFDTGSPIFCQQRVG
KNQRPFTLIKFRTMPKNTASVATHLVGASSVTRLGQFLRKTKLDELPQLINVLKGEMS
LVGPRPCLFNQQDLIAERESRGVFTVLPGITGLAQVNEVDMSTPVKLAELDQQMIQTL
NLKNYFTYIIQTVLGKGAGDRVKP"
misc_feature <268469..268903
/locus_tag="O3Y_01225"
/note="Sugar transferases involved in lipopolysaccharide
synthesis [Cell envelope biogenesis, outer membrane];
Region: WcaJ; COG2148"
/db_xref="CDD:225059"
gene 269130..270446
/locus_tag="O3Y_01230"
/db_xref="GeneID:11913195"
CDS 269130..270446
/locus_tag="O3Y_01230"
/note="COG1236 Predicted exonuclease of the beta-lactamase
fold involved in RNA processing"
/codon_start=1
/transl_table=11
/product="metallo-beta-lactamase family protein
RNA-specific"
/protein_id="YP_005332121.1"
/db_xref="GI:379740152"
/db_xref="GeneID:11913195"
/translation="MEVVHHGGKASVTGSCHELRADGQALLIDCGLFQGADERPLAVE
FALGHVDALILTHAHIDHIGRLPWLLAAGLKQPIYSTAATAELVPLMLEDGLKLQLGM
SPKQSERVLTEVRRLLRVQDYQKWFAVQPKRADSLWVRFQPAGHILGSAYVEIRRPNG
EVVVFSGDLGPSHTPLLPDPQSPERADYLFIETTYGDKQHEDVQSRGQRLRAMIERSL
TDGGAILIPAFSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRFKQL
WGREAKARLQMHRHPLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGRI
MDYLKALLPDKRTDLILAGFQAEGTLGRSIQSGQPSVWIEGTEVEVNAHIHTMSGYSA
HADKADLLRFITGIPEKPKQVHLIHGEAPAKQAFAAELTQLGYSVL"
misc_feature 269130..270440
/locus_tag="O3Y_01230"
/note="Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis]; Region: YSH1; COG1236"
/db_xref="CDD:224157"
misc_feature 269163..269648
/locus_tag="O3Y_01230"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; pfam00753"
/db_xref="CDD:216099"
misc_feature 269829..270221
/locus_tag="O3Y_01230"
/note="Beta-Casp domain; Region: Beta-Casp; smart01027"
/db_xref="CDD:214983"
misc_feature 270255..270392
/locus_tag="O3Y_01230"
/note="RNA-metabolising metallo-beta-lactamase; Region:
RMMBL; pfam07521"
/db_xref="CDD:203663"
gene complement(270708..271946)
/locus_tag="O3Y_01235"
/db_xref="GeneID:11913196"
CDS complement(270708..271946)
/locus_tag="O3Y_01235"
/note="COG0668 Small-conductance mechanosensitive channel"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332122.1"
/db_xref="GI:379740153"
/db_xref="GeneID:11913196"
/translation="MLETLTLWLQKFDIEIERVIQLAEALGLIAAISIAIHLVLHRGV
LLWLKRHTHHEQSVWRNALFKEHLFSRVALLIQGVVIAVQTQLWLSPNTFAYDVLHTL
TSLWIVVFGMLATYSVLNVLELLISRTQVGKNLPTRGILQSIKLIVFIIAALFFTSIL
IGKSPVILLSGLGAMTAVFMLVFKDPILGLVAGVQLSANKMLSVGDWLEMPKYGADGS
VIDISLTTVKVQNWDKTITTIPSYALISDSFKNWKGMQESGGRRIKRSILIDATSVHF
LTEEEKQALKKAQLLEPYLVEKEQEISSYNQQKHWDLACRINGRRLTNIGSFRAYLER
YLRTHPNIHQDMTLMVRQLAPTHDGISLEVYCFTSTTVWVEYERIQSDIFDHIYAVLP
EFDLRVSQAPTGNDFRALRG"
misc_feature complement(270741..271727)
/locus_tag="O3Y_01235"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:223740"
misc_feature complement(270753..271517)
/locus_tag="O3Y_01235"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene complement(272001..272573)
/locus_tag="O3Y_01240"
/db_xref="GeneID:11913197"
CDS complement(272001..272573)
/locus_tag="O3Y_01240"
/note="COG1573 Uracil-DNA glycosylase"
/codon_start=1
/transl_table=11
/product="uracil-DNA glycosylase"
/protein_id="YP_005332123.1"
/db_xref="GI:379740154"
/db_xref="GeneID:11913197"
/translation="MLESLLTEIRQCTVCEPHLPLGANPVIRAHPAAKILIIGQAPGT
KVHQTSIPWNDASGERLRQWLGLDREAFYCEENIAIMPMGLCYPGKGRSGDLPPRKEC
APLWHAKVLEQLPNRQLTLLIGQYAQHYYLSDKPSTLTETVQQWQRWAPSVLPLPHPS
PRNTLWLKNHPWFEQDIVPYLRQRVKQVLT"
misc_feature complement(272007..272519)
/locus_tag="O3Y_01240"
/note="Uncharacterized subfamily of Uracil-DNA
glycosylases; Region: UDG_like_1; cd10033"
/db_xref="CDD:198431"
misc_feature complement(order(272100..272102,272328..272330,
272451..272459))
/locus_tag="O3Y_01240"
/note="putative uracil binding site [chemical binding];
other site"
/db_xref="CDD:198431"
misc_feature complement(order(272094..272096,272100..272105,
272196..272204,272445..272447,272451..272456))
/locus_tag="O3Y_01240"
/note="putative active site [active]"
/db_xref="CDD:198431"
gene complement(272573..273496)
/locus_tag="O3Y_01245"
/db_xref="GeneID:11913198"
CDS complement(272573..273496)
/locus_tag="O3Y_01245"
/note="COG0111 Phosphoglycerate dehydrogenase and related
dehydrogenases"
/codon_start=1
/transl_table=11
/product="D-isomer specific 2-hydroxyacid dehydrogenase
family protein"
/protein_id="YP_005332124.1"
/db_xref="GI:379740155"
/db_xref="GeneID:11913198"
/translation="MNNFHQLYILTEHDEHYREQILERQLEGLALTEDRAKATILLAA
PPMAARRLDEFPRLQWLHSAYAGVDTLMDPKLRKNYLLTNVKGIFGHLIAEYVMGYAI
QYQRDFRLYQTQQAERLWQPRPYSSLANQTLVILGTGSIGSHLAHVAKQFGLRVVGVN
RTGIPAKEGHFDATYHISELPAALMRADLLVNTLPNTPATEGLLNQENLRHCHQALLF
NVGRGKTLVEQGLPDLIAAGHIRHAFLDVFIKEPLAQDHPFWDNPAITITPHIAAVSF
PEQVVDIFADNYQRWCDNLPLRNQIDFEKGY"
misc_feature complement(272576..273487)
/locus_tag="O3Y_01245"
/note="Phosphoglycerate dehydrogenase and related
dehydrogenases [Amino acid transport and metabolism];
Region: SerA; COG0111"
/db_xref="CDD:223189"
misc_feature complement(272576..273484)
/locus_tag="O3Y_01245"
/note="Putative D-isomer specific 2-hydroxyacid
dehydrogenase; Region: 2-Hacid_dh_1; cd05300"
/db_xref="CDD:240625"
misc_feature complement(order(272678..272683,272687..272689,
272756..272761,272831..272839,272897..272899,
272912..272920,273014..273022,273074..273088,
273218..273220,273230..273232,273299..273301))
/locus_tag="O3Y_01245"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:240625"
misc_feature complement(order(272678..272680,272687..272689,
272834..272839,273074..273076,273230..273232,
273299..273301))
/locus_tag="O3Y_01245"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:240625"
misc_feature complement(order(272687..272689,272744..272746,
272831..272833))
/locus_tag="O3Y_01245"
/note="catalytic site [active]"
/db_xref="CDD:240625"
gene 273570..274157
/locus_tag="O3Y_01250"
/db_xref="GeneID:11913199"
CDS 273570..274157
/locus_tag="O3Y_01250"
/note="COG3068 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332125.1"
/db_xref="GI:379740156"
/db_xref="GeneID:11913199"
/translation="MLQNPLQLRLEKFEPWQQITFMACLCERMYPNYAMFCEHTQFAE
ARIYRDILDSVWELMTVKNAKVNFEHQLEKLEELIPTSDAFDLYAVYPAIDACEGLAT
LLHGLLDRDDLAESMIKVSQISVQTVAQLEEAQTGEAITNDNQKENEAVCAEWDVQWA
IFRPLREAVERDIDLIKDLRKELREEGVSNIGVEL"
misc_feature 273570..274154
/locus_tag="O3Y_01250"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3068"
/db_xref="CDD:225610"
gene 274520..275719
/locus_tag="O3Y_01255"
/db_xref="GeneID:11913200"
CDS 274520..275719
/locus_tag="O3Y_01255"
/note="COG1482 Phosphomannose isomerase"
/codon_start=1
/transl_table=11
/product="mannose-6-phosphate isomerase"
/protein_id="YP_005332126.1"
/db_xref="GI:379740157"
/db_xref="GeneID:11913200"
/translation="MNTAIPAPFFIMHNVIQSYAWGSIDSINQLFDIPNPKGEPQAEV
WMGTHPNGCSYVEFSGEKIKLSTLIEQKKTDFLSIQTVEQFGELPYLFKILAANQALS
IQVHPSKAEAEEGFARENAQGILINATNRNYKDPNHKPELVYALTNYQAMNGFRPLSD
IISLFSALAIDEIASLLSHLKRNQNETGLEHFFTKLLSLCGEKKRRVLEQLLSYARSH
AKQPIFALIEELATQYPNDIGLFAPLMLHVLTLQPGEAMFLDARTPHAYLKGTALEIM
ANSDNVLRAGLTPKHIDVVELAKCTLFKEKSEATLLLTPIQQGDMLSFPVPVADFKFA
IFPRPQQANITVSSAEILLPIDCDATLVSPCGTVLTVHKGQSVFIPAYTEKYCLSAAG
RVARAYN"
misc_feature 274535..>274888
/locus_tag="O3Y_01255"
/note="Alpha-Mannosidase Binding Domain of Atg19/34;
Region: ABD; cl15429"
/db_xref="CDD:246961"
misc_feature 274553..275716
/locus_tag="O3Y_01255"
/note="mannose-6-phosphate isomerase; Provisional; Region:
PRK15131"
/db_xref="CDD:185085"
misc_feature <274988..275164
/locus_tag="O3Y_01255"
/note="MgtE intracellular N domain; Region: MgtE_N;
cl15244"
/db_xref="CDD:246905"
misc_feature <275234..275671
/locus_tag="O3Y_01255"
/note="Alpha-Mannosidase Binding Domain of Atg19/34;
Region: ABD; cl15429"
/db_xref="CDD:246961"
gene 275778..276665
/locus_tag="O3Y_01260"
/db_xref="GeneID:11913201"
CDS 275778..276665
/locus_tag="O3Y_01260"
/note="COG1940 Transcriptional regulator/sugar kinase"
/codon_start=1
/transl_table=11
/product="ROK family protein"
/protein_id="YP_005332127.1"
/db_xref="GI:379740158"
/db_xref="GeneID:11913201"
/translation="MLIGLDIGGTKIEICVLDKQGSMLYRQRIATPDNYSQFVDCVCS
LIVDAEQATQPVDSIGIGLPGAVSPVTGLIKNANCTFLNGQDLSSDLQYRLGREVKLA
NDANCFALSEAIDGAGKESMVVFGAILGTGCGGSIVVNRQVLVGPNAICGEWGHNPLP
GYHLEQDGAARYCYCGRQNCIERFISGSGFQDSYQALTGECITASEIMKRYKQQEPEA
IHCYTQLIDHMARSFAGLVNVLDPDIIVLGGGLSNIDELYRDLPTATARHVFSDSAQV
HFAKAVFGDSSGIRGAAWL"
misc_feature 275778..276662
/locus_tag="O3Y_01260"
/note="fructokinase; Reviewed; Region: PRK09557"
/db_xref="CDD:236565"
misc_feature 275784..>276194
/locus_tag="O3Y_01260"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(275793..275804,275808..275810,275814..275816,
276087..276089,276159..276170)
/locus_tag="O3Y_01260"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(277013..278071)
/locus_tag="O3Y_01265"
/db_xref="GeneID:11913202"
CDS complement(277013..278071)
/locus_tag="O3Y_01265"
/note="COG1253 Hemolysins and related proteins containing
CBS domains"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332128.1"
/db_xref="GI:379740159"
/db_xref="GeneID:11913202"
/translation="MFLLAIYISVAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAA
NRLAGLKADIDRPLASILTLNTIAHTIGAATAGAQAAVVFGSQWLGLFSAVLTLGILV
LSEIVPKTIGATYWRELAPQASLVLRWMVWALTPFVWFSEQITKRLARKVEAPKLRDE
ISAMAMLANENGEFAEGESKMLNNLLAIQNVPVTQVMTPRPVLFRVSADLTIDEFIEQ
HRDTPFSRPLIYSEEKDNIVGFVHRLELFKEQQNGQGNLLLGDVMRPIHVVLNTLSLP
KAFDQMMQKRLQLSVVVDEYGSVQGLLTLEDIFEHLLGEEIIDEADRTTDMQQLATER
WEHWKRQHRMIESRDEVE"
misc_feature complement(277538..278065)
/locus_tag="O3Y_01265"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:216595"
misc_feature complement(277145..277495)
/locus_tag="O3Y_01265"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:223591"
misc_feature complement(277142..277471)
/locus_tag="O3Y_01265"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:239963"
gene 278443..278715
/locus_tag="O3Y_01270"
/db_xref="GeneID:11913203"
CDS 278443..278715
/locus_tag="O3Y_01270"
/note="COG0776 Bacterial nucleoid DNA-binding protein"
/codon_start=1
/transl_table=11
/product="DNA-binding protein HU"
/protein_id="YP_005332129.1"
/db_xref="GI:379740160"
/db_xref="GeneID:11913203"
/translation="MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQL
IGFGTFKVNHRSARTGRNPKTGEEIKIAAANVPAFVAGKALKDAIK"
misc_feature 278446..278706
/locus_tag="O3Y_01270"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature order(278446..278451,278458..278460,278467..278469,
278479..278481,278521..278523,278530..278535,
278542..278547,278557..278571,278578..278583,
278596..278598,278662..278667,278677..278679,
278683..278685,278704..278706)
/locus_tag="O3Y_01270"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
misc_feature order(278446..278454,278518..278520,278563..278565,
278569..278571,278575..278580,278587..278589,
278599..278601,278605..278610,278614..278616,
278623..278634,278662..278664,278674..278676,
278680..278682,278689..278691)
/locus_tag="O3Y_01270"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
gene 278761..279450
/locus_tag="O3Y_01275"
/db_xref="GeneID:11913204"
CDS 278761..279450
/locus_tag="O3Y_01275"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332130.1"
/db_xref="GI:379740161"
/db_xref="GeneID:11913204"
/translation="MKQQLSFLFLLSGLLAGCSSTPNPNLEQINQFTGGKTIGDATSF
YWYTESFQKPSSASDYVTSGDYGSYQTSYRWEEGQVREIRREGEHLDGKKLVPFRVHI
RFSKEGEAVYQQYRLGGKVLPMNEEQLAHYVLQAKAVAEATKEQDKQGLELIQGYWNG
KTFETCQGVEYQRVEFNQSLPSFVFNRLASIESYVAFLGKIRNGKVHIDELLLLDDAG
HDCVKEPELLD"
misc_feature 278857..279438
/locus_tag="O3Y_01275"
/note="Protein of unknown function (DUF1481); Region:
DUF1481; pfam07356"
/db_xref="CDD:148775"
gene complement(279550..280839)
/locus_tag="O3Y_01280"
/db_xref="GeneID:11913205"
CDS complement(279550..280839)
/locus_tag="O3Y_01280"
/EC_number="6.3.4.13"
/note="COG0151 Phosphoribosylamine-glycine ligase"
/codon_start=1
/transl_table=11
/product="phosphoribosylamine--glycine ligase"
/protein_id="YP_005332131.1"
/db_xref="GI:379740162"
/db_xref="GeneID:11913205"
/translation="MQVLIIGSGGREHALAWKVAQNPQVDTIYVAPGNAGTALEHKVQ
NVNIGITDIPALVAFAQDKAIELTIVGPEAPLVIGVVDAFRAAGLPIFGPTQGAAQLE
GSKAFTKDFLARHNIPTAAYANFTEIEPALAYVREKGAPIVVKADGLAAGKGVIVAMT
LQEAEDAIQDMLAGNAFGSAGSRVVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRV
GDADTGPNTGGMGAYSPAPVVTQDVHDRVMREVIDPTVRGMAAEGNTYTGFLYAGLMI
DSTGAPKVIEYNCRFGDPETQPIMMRLQSDLVELCQAAIAGKLDQVESKWDPRASIGV
VLAAGGYPGDYAKGEVISGLPTQESAGQKVFHAGTETQGDQVVTNGGRVLCATALGNT
VLEAQQRAYQLADQIHWNGMFCRRDIGYRAIAREQAK"
misc_feature complement(279565..280839)
/locus_tag="O3Y_01280"
/note="phosphoribosylamine--glycine ligase; Provisional;
Region: PRK00885"
/db_xref="CDD:234856"
misc_feature complement(280534..280839)
/locus_tag="O3Y_01280"
/note="Phosphoribosylglycinamide synthetase, N domain;
Region: GARS_N; pfam02844"
/db_xref="CDD:217251"
misc_feature complement(279952..280533)
/locus_tag="O3Y_01280"
/note="Phosphoribosylglycinamide synthetase, ATP-grasp (A)
domain; Region: GARS_A; pfam01071"
/db_xref="CDD:216282"
misc_feature complement(279571..279852)
/locus_tag="O3Y_01280"
/note="Phosphoribosylglycinamide synthetase, C domain;
Region: GARS_C; pfam02843"
/db_xref="CDD:217250"
gene complement(280898..282490)
/gene="purH"
/locus_tag="O3Y_01285"
/db_xref="GeneID:11913206"
CDS complement(280898..282490)
/gene="purH"
/locus_tag="O3Y_01285"
/EC_number="2.1.2.3"
/note="COG0138 AICAR transformylase/IMP cyclohydrolase
PurH (only IMP cyclohydrolase domain in Aful)"
/codon_start=1
/transl_table=11
/product="bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase"
/protein_id="YP_005332132.1"
/db_xref="GI:379740163"
/db_xref="GeneID:11913206"
/translation="MNNARPIHRALLSVSDKTGIVEFAKALAERGVELLSTGGTARLL
AEQGLTVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAVMNTHGIQPIDMVV
VNLYPFAQTVANPNCTLADAVENIDIGGPTMVRSAAKNHKDVAIVVNAHDYDRVIREM
DANHNSLTLATRFDLAIAAFEHTAAYDGMIANYFGTLVPSYGDNKEGDEESKFPRTFN
AQFIKKQDMRYGENSHQAAAFYVEANPQEASVATARQIQGKALSYNNIADTDAALECV
KEFSEPACVIVKHANPCGVALGDDLLQAYNRAYQTDPTSAFGGIIAFNRELDGETARA
IIERQFVEVIIAPKVSQAAIDIVAAKQNVRLLECGEWQGQTTGFDLKRVNGGLLVQDR
DQGMVAQDDLQVVSTRQPSDAELKDALFCWKVAKYVKSNAIVYAKGDMTIGIGAGQMS
RVYSAKIAGIKAADEGLEVAGSVMASDAFFPFRDGIDAAAEAGITCVIQPGGSMRDQE
VIDAANEHGMAMIFTGMRHFRH"
misc_feature complement(280901..282478)
/gene="purH"
/locus_tag="O3Y_01285"
/note="bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional; Region:
purH; PRK00881"
/db_xref="CDD:234854"
misc_feature complement(281909..282466)
/gene="purH"
/locus_tag="O3Y_01285"
/note="Inosine monophosphate cyclohydrolase domain. This
is the N-terminal domain in the purine biosynthesis
pathway protein ATIC (purH). The bifunctional ATIC protein
contains a C-terminal ATIC formylase domain that
formylates...; Region: IMPCH; cd01421"
/db_xref="CDD:238709"
misc_feature complement(order(282110..282112,282179..282181,
282281..282286,282371..282373,282380..282382,
282440..282442,282446..282448))
/gene="purH"
/locus_tag="O3Y_01285"
/note="purine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:238709"
misc_feature complement(order(281909..281911,281918..281923,
281927..281935,281957..281965,281972..281974,
282074..282076,282083..282088,282098..282100,
282107..282115,282251..282253,282260..282265,
282272..282280,282287..282292,282299..282304,
282311..282313))
/gene="purH"
/locus_tag="O3Y_01285"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238709"
misc_feature complement(order(282110..282112,282284..282286))
/gene="purH"
/locus_tag="O3Y_01285"
/note="putative catalytic residues [active]"
/db_xref="CDD:238709"
misc_feature complement(281105..282082)
/gene="purH"
/locus_tag="O3Y_01285"
/note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
smart00798"
/db_xref="CDD:214822"
misc_feature complement(280901..>281206)
/gene="purH"
/locus_tag="O3Y_01285"
/note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
cl03362"
/db_xref="CDD:243400"
gene 282779..283177
/gene="zntR"
/locus_tag="O3Y_01290"
/db_xref="GeneID:11913207"
CDS 282779..283177
/gene="zntR"
/locus_tag="O3Y_01290"
/note="COG0789 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="zinc-responsive transcriptional regulator"
/protein_id="YP_005332133.1"
/db_xref="GI:379740164"
/db_xref="GeneID:11913207"
/translation="MFQIGELAKRCGVSTDTLRFYEKNELIAPATRTESGYRLYDEKS
QQQVTFILKAKELGLSLEEIKELLEIRLEATEHSCAEVKAITSAKLAVIDQKIEELTR
IRSALKKINDACCGHVEDNASHCSILAALE"
misc_feature 282779..283174
/gene="zntR"
/locus_tag="O3Y_01290"
/note="zinc-responsive transcriptional regulator;
Provisional; Region: zntR; PRK09514"
/db_xref="CDD:181924"
misc_feature 282782..283162
/gene="zntR"
/locus_tag="O3Y_01290"
/note="Helix-Turn-Helix DNA binding domain of Heavy Metal
Resistance transcription regulators; Region: HTH_HMRTR;
cd04770"
/db_xref="CDD:133398"
misc_feature order(282785..282793,282833..282835,282884..282892)
/gene="zntR"
/locus_tag="O3Y_01290"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133398"
misc_feature order(282926..282928,282935..282937,282947..282952,
282977..282979,283013..283018,283025..283027,
283034..283036,283046..283048,283064..283066,
283076..283078,283085..283090,283109..283111,
283124..283126,283136..283138,283151..283153,
283157..283159)
/gene="zntR"
/locus_tag="O3Y_01290"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133398"
misc_feature order(283013..283015,283118..283120,283151..283153)
/gene="zntR"
/locus_tag="O3Y_01290"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:133398"
gene 283404..284963
/locus_tag="O3Y_01295"
/db_xref="GeneID:11913208"
CDS 283404..284963
/locus_tag="O3Y_01295"
/note="COG3710 DNA-binding winged-HTH domains"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional activator CadC"
/protein_id="YP_005332134.1"
/db_xref="GI:379740165"
/db_xref="GeneID:11913208"
/translation="MIGICFQINDWVLCIDENKLYRQDREVSAEPRLINLLHFLAEHA
GEVFGREELIQHVWDGAIVTDQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVA
NVQRLDGNPYVSRQEESTASDVCLADDIDDVEDAVPEIVFPAGPLTRAVCQSQQPKKS
SKPNVSRWRLNLLNAIWIGLVIVAMGFFTVQQSQVRITQVVDTHLIEFKFQDGFHAQA
LTHELADGIAQKLMADLTQVSDYRVILGKTAYSSGILPGKSIMVRVNDQDGHEFLDLE
LKNNSSDAVLFSRQYPLDSQHLASVLKSAEWDVMQALKIPNAEQQAQRLLVDFPRQPA
ALGLYVRANHYLNVADRPQFQKGIYLLEQVLKLEPDNHYVQAELLIAYHVQQAISPDQ
ALNQDRMLVLSEQLQQVSYSPQAVVQPRIYEALALQATVENQVETATHYLAQAQGLRE
SVLSYVLQGKHAELKGDLDGASDAYSEAFYMDTSLETYLLCENLVFHSNLKSIDYAMY
RSVHPSVVRLL"
misc_feature 283404..284951
/locus_tag="O3Y_01295"
/note="DNA-binding transcriptional activator CadC;
Provisional; Region: PRK10153"
/db_xref="CDD:236658"
misc_feature 283419..283703
/locus_tag="O3Y_01295"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(283491..283493,283548..283553,283602..283604,
283611..283613,283635..283640,283677..283679,
283692..283694)
/locus_tag="O3Y_01295"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene 285663..287000
/gene="cadB"
/locus_tag="O3Y_01300"
/db_xref="GeneID:11913209"
CDS 285663..287000
/gene="cadB"
/locus_tag="O3Y_01300"
/note="COG0531 Amino acid transporters"
/codon_start=1
/transl_table=11
/product="lysine/cadaverine antiporter"
/protein_id="YP_005332135.1"
/db_xref="GI:379740166"
/db_xref="GeneID:11913209"
/translation="MSSNAKKIGLIACTGVVAGNMMGSGIALLPSTLASVGSISIYSW
LICIVGALSLAFVFARLATKNPQEGGPIAYAGEVSPVFGFQTGVLYYHANWIGNLAIA
ITGVSYLSVFFPVLNNPIPAGLATIASVWLFTLVNLLGGSWVSRLCTIGLVLILIPVV
GTALFGWTHFDSALYSQNWNVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPK
RTVPLATMLGIGLAGLIYVLSTQMISGMFPASEVAASGAPFALATTALFGSWTAPFVS
AFTALACFTSLGSWMMLVGEAGKRAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLL
MLVLMFFSSETAHASDLFNQLTTDAVLLTMLPYFYSSINLIRFEGMTTRNTFVMLFSG
IASLFCMVALAGAEGSTLTATFIMSLIILMFYSKKAGLDKYLETHPQQASAQF"
misc_feature 285666..286970
/gene="cadB"
/locus_tag="O3Y_01300"
/note="lysine/cadaverine antiporter; Provisional; Region:
cadB; PRK10435"
/db_xref="CDD:182458"
gene 287110..289245
/locus_tag="O3Y_01305"
/db_xref="GeneID:11913210"
CDS 287110..289245
/locus_tag="O3Y_01305"
/note="COG1982 Arginine/lysine/ornithine decarboxylases"
/codon_start=1
/transl_table=11
/product="lysine decarboxylase CadA"
/protein_id="YP_005332136.1"
/db_xref="GI:379740167"
/db_xref="GeneID:11913210"
/translation="MNIFAILNHMGVFFKEEPVRQLHAALEKAGYDVVYPVDDKDLIK
MIEMNPRICGVLFDWDKYSLELCERISKVNEKLPVHAFANEQSTLDISLTDLRLNVHF
FEYALGMADDIAIKINQATQEYKDAIMPPFTKALFKYVEEGKYTFCTPGHMGGTAFQK
SPVGSIFYDFYGPNTFKADVSISMPELGSLLDHSGPHKEAEEYIARTFNADASYIVTN
GTSTSNKIVGMFSAPAGSTVLVDRNCHKSLTHLMMMTDVTPIYFRPTRNAYGILGGIP
QNEFSREVIAEKVANTPGASAPSYAVITNSTYDGLLYNTQFIKESLDCKHIHFDSAWV
PYTNFNRIYEGKCGMSGEAMPGKVFYETQSTHKLLAAFSQASMIHVKGEFDRESFNEA
FMMHTSTSPQYGIVASTETAAAMMRGNTGRKLMQDSIDRAIRFRKEIKRLKGESEGWF
FDVWQPENIETTECWKLDPNQDWHGFKNLDDNHMYLDPIKITLLTPGMSKDGELEQSG
IPASLVSKYLDEHGIVVEKTGPYNLLFLFSIGIDKSKAMQLLRGLTEFKRGYDLNLTI
RTMLPSLYREDPVFYEGMRIQELAQGIHDLTRKYQLPELMYKAFDVLPEMKVTPHVAW
QQELRGQTEEILLNEMVGRVSANMILPYPPGVPLVLPGEMVTDSSRPVLDFLEMLCEI
GAHYPGFETDIHGLYRQKDGSYTVKVLKD"
misc_feature 287110..289242
/locus_tag="O3Y_01305"
/note="lysine decarboxylase CadA; Provisional; Region:
PRK15400"
/db_xref="CDD:185298"
misc_feature 287149..287481
/locus_tag="O3Y_01305"
/note="Orn/Lys/Arg decarboxylase, N-terminal domain;
Region: OKR_DC_1_N; pfam03709"
/db_xref="CDD:217683"
misc_feature 287500..288432
/locus_tag="O3Y_01305"
/note="Ornithine decarboxylase family. This family belongs
to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups in
this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine...; Region:
Orn_deC_like; cd00615"
/db_xref="CDD:99739"
misc_feature order(287644..287646,287659..287661,287683..287685,
287758..287766,287770..287775,287782..287784,
287794..287802,287806..287811,287842..287847,
288205..288210,288217..288231,288280..288285,
288289..288297,288301..288303,288322..288324,
288331..288333,288340..288342,288379..288384)
/locus_tag="O3Y_01305"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99739"
misc_feature order(287764..287772,287842..287844,287848..287850,
288019..288021,288097..288099,288103..288108,
288199..288201,288205..288210)
/locus_tag="O3Y_01305"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99739"
misc_feature 288208..288210
/locus_tag="O3Y_01305"
/note="catalytic residue [active]"
/db_xref="CDD:99739"
misc_feature 288817..289221
/locus_tag="O3Y_01305"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene complement(289363..291003)
/locus_tag="O3Y_01310"
/db_xref="GeneID:11913211"
CDS complement(289363..291003)
/locus_tag="O3Y_01310"
/note="COG0840 Methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_005332137.1"
/db_xref="GI:379740168"
/db_xref="GeneID:11913211"
/translation="MTSVSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLE
KQVQTQHLVESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQ
PAMVMHPMKPDLNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVD
KVSYVKLFKPWGWIIGTGIYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLIGRSIT
QPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITE
SVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSA
NQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNL
LALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSM
TQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQ
IAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI"
misc_feature complement(290608..290892)
/locus_tag="O3Y_01310"
/note="Cache domain; Region: Cache_2; pfam08269"
/db_xref="CDD:219770"
misc_feature complement(290206..290355)
/locus_tag="O3Y_01310"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(290212..290217,290224..290229,
290233..290238,290245..290250,290254..290259,
290311..290313,290317..290322,290329..290334,
290338..290343,290350..290355))
/locus_tag="O3Y_01310"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(289369..290154)
/locus_tag="O3Y_01310"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:214599"
misc_feature complement(289474..289983)
/locus_tag="O3Y_01310"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(289477..289482,289489..289491,
289498..289503,289510..289512,289519..289524,
289528..289533,289540..289545,289549..289554,
289561..289563,289570..289575,289582..289584,
289591..289596,289603..289608,289612..289617,
289624..289626,289633..289638,289645..289647,
289654..289659,289696..289701,289708..289713,
289717..289722,289729..289734,289741..289743,
289750..289755,289762..289764,289771..289773,
289783..289785,289804..289806,289813..289815,
289825..289827,289834..289839,289846..289848,
289855..289857,289864..289869,289876..289881,
289888..289890,289897..289902,289906..289908,
289918..289923,289927..289932,289939..289941,
289948..289953,289960..289965,289972..289974,
289981..289983))
/locus_tag="O3Y_01310"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(289738..289839)
/locus_tag="O3Y_01310"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(291268..291945)
/locus_tag="O3Y_01315"
/db_xref="GeneID:11913212"
CDS complement(291268..291945)
/locus_tag="O3Y_01315"
/note="COG3295 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332138.1"
/db_xref="GI:379740169"
/db_xref="GeneID:11913212"
/translation="MQRQVKGDNHRRAGLTASLIMQRRRLPLHNNKWIRRLHAWCGFF
TLLLMLLYGLTGLWLSHRAVWPLPGPHTSKSEWQLSLTEPIDSVSTFQAQLNTEYGEH
EWTIREIAAQQLPTPQQPLLIPARWEARATSVTDTFSAQYVPGTLVIQAQHQKANWAA
VLNRLHRGMGTGLGWQLFSDLAAVAMLLLALTSLLMWTKLHGSPKRAGWLLIGGSVAT
TLFAIFG"
misc_feature complement(291271..291936)
/locus_tag="O3Y_01315"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3295"
/db_xref="CDD:225832"
gene complement(291966..292442)
/locus_tag="O3Y_01320"
/db_xref="GeneID:11913213"
CDS complement(291966..292442)
/locus_tag="O3Y_01320"
/note="COG1629 Outer membrane receptor proteins, mostly Fe
transport"
/codon_start=1
/transl_table=11
/product="TonB system receptor"
/protein_id="YP_005332139.1"
/db_xref="GI:379740170"
/db_xref="GeneID:11913213"
/translation="MRDPNDQERIILTGLQRTDGIELSSRALLTDEFSLRGGIGLQDA
KYVEADASEQGKRPTNVSRLNGELFVAYQSASDGWFGETGFVAVGDRYADRTNTTKLP
GYARFDARLGYQWQAWRTQLSVENLLDKDYYLSATSSTQIQPGAPREFYLTASYQF"
misc_feature complement(291969..>292397)
/locus_tag="O3Y_01320"
/note="Porin superfamily. These outer membrane channels
share a beta-barrel structure that differ in strand and
shear number. Classical (gram-negative ) porins are
non-specific channels for small hydrophillic molecules and
form 16 beta-stranded barrels (16,20)...; Region:
OM_channels; cl17244"
/db_xref="CDD:247798"
gene complement(292524..294008)
/locus_tag="O3Y_01325"
/db_xref="GeneID:11913214"
CDS complement(292524..294008)
/locus_tag="O3Y_01325"
/note="COG1629 Outer membrane receptor proteins, mostly Fe
transport"
/codon_start=1
/transl_table=11
/product="iron complex outermembrane recepter protein"
/protein_id="YP_005332140.1"
/db_xref="GI:379740171"
/db_xref="GeneID:11913214"
/translation="MSHFTRSRTWVSLAVFAACAPAYAEQETLVITSQQSQLPEVATA
TRTATPAKLVPQTIDSLSAEELTAFGAPSLSEALAGVPGVNANGDTRFDGINIRGFSA
SNDFYLDGFRDDMQYTRDLGNIERIEVLKGPAAVLYGRGSTGGIVNRVSKVPHAGDAA
SVSARIGSHDYQRLAADLNGEVNQQVQVRLNIAQEDYGSFRHGVEGKRTLLAPSLNWD
INDDVSWLIQYEQHSHNRVPDRGIPAVNGSPAEVPASSVYSDTSRDFIDDDVATTRSR
ITWAFHPEWQLRQQLSYTKLDSQFDNTYVARVSGDQVTRQRFQQDLQANNLISNTETE
GTFNTGPIAHRILIGLEQGWQERSPKLYRNANSIPSGNLYQPESLPTYNGPMSVFSDA
THKVRSYGIYVQDQLQWGDWIVLAGLRHDDFTVTTHRHDTNKEETISSNSLSPRLGVV
WTPVQEHALYASYSQTYSPVGGGVIGITPGDKHNHLDPEHSRLY"
misc_feature complement(<292608..293840)
/locus_tag="O3Y_01325"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:238657"
misc_feature complement(order(293556..293582,293616..293648,
293679..293693,293709..293726,293754..293783,
293811..293840))
/locus_tag="O3Y_01325"
/note="N-terminal plug; other site"
/db_xref="CDD:238657"
misc_feature complement(order(293043..293045,293115..293117))
/locus_tag="O3Y_01325"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:238657"
gene complement(294230..294835)
/locus_tag="O3Y_01330"
/db_xref="GeneID:11913215"
CDS complement(294230..294835)
/locus_tag="O3Y_01330"
/EC_number="4.1.3.16"
/note="COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase"
/codon_start=1
/transl_table=11
/product="keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase"
/protein_id="YP_005332141.1"
/db_xref="GI:379740172"
/db_xref="GeneID:11913215"
/translation="MTIEQRLRAIKIVPVIAINDVAHALPLAKVLVENGLPCAEVTFR
TAAAAESIRIMRKAYPDLLIGAGTVLTTAQVDEAIAAGADFIVSPGLNPTTVKYCQQR
NIAIIPGVNNPSLVEQAMEMGLRTLKFFPAEPSGGIAMLKALSAVYPVSFMPTGGINP
NNAQEYLALKSVVACGGTWMVPTDLMDKGDWDTLAELVRNV"
misc_feature complement(294233..294835)
/locus_tag="O3Y_01330"
/note="keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional; Region: PRK05718"
/db_xref="CDD:235577"
misc_feature complement(294245..294817)
/locus_tag="O3Y_01330"
/note="KDPG and KHG aldolase; Region: KDPG_aldolase;
cd00452"
/db_xref="CDD:188632"
misc_feature complement(order(294371..294373,294446..294448,
294452..294454,294632..294634,294704..294706,
294716..294718,294791..294793))
/locus_tag="O3Y_01330"
/note="active site"
/db_xref="CDD:188632"
misc_feature complement(order(294392..294397,294407..294409,
294443..294448,294473..294475,294485..294487,
294491..294502,294560..294571,294626..294628,
294632..294634,294704..294706))
/locus_tag="O3Y_01330"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:188632"
misc_feature complement(294452..294454)
/locus_tag="O3Y_01330"
/note="catalytic residue [active]"
/db_xref="CDD:188632"
gene complement(294848..296224)
/locus_tag="O3Y_01335"
/db_xref="GeneID:11913216"
CDS complement(294848..296224)
/locus_tag="O3Y_01335"
/note="COG2610 H+/gluconate symporter and related
permeases"
/codon_start=1
/transl_table=11
/product="gluconate:H+ symporter, GntP family protein"
/protein_id="YP_005332142.1"
/db_xref="GI:379740173"
/db_xref="GeneID:11913216"
/translation="MDPLLQTSDPTYLLTVAAVAIIALLLLIIRFKIHAFASLTLVSL
GTAIATGVASDKVVSTMMTGFGGTLASVALLVGLGAMIGKILEVTGGAKVLADTLIGR
FGEQRAPFALGVASLLFGFPIFFDAGLIVMMPIIFSVAKRFGGSPLKYALPSAGAFAV
MHAFVPPHPGPVAAAELLGANIGLLLIVGLLVAIPTWYLGAYLFGLYAGKKFDIPLSK
AFFNTDAIIDEAKLPKFATVMTILVLPVLLIFMDTGLNTLAVAGMIDGKAPAVEFLRM
LGKTPIALLITLLVCIAAFAKDYGMARLEKLCGDSLAPICAVILVTGAGGMFGGVLRA
SGIGSALAGVLSDTGMPVVVAAFVIATCLRVAQGSATVALTTTAALIAPTVAATTGLS
DLDLCFIVISIAGGATVLSHFNDSGFWLVSRLMEMDEKTTLKTWTVMETLLGGIAFLI
VATLSFIL"
misc_feature complement(294851..296137)
/locus_tag="O3Y_01335"
/note="H+/gluconate symporter and related permeases
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism]; Region: GntT; COG2610"
/db_xref="CDD:225330"
misc_feature complement(294851..296137)
/locus_tag="O3Y_01335"
/note="fructuronate transporter; Provisional; Region:
PRK10034; cl15264"
/db_xref="CDD:246912"
gene 296378..296893
/locus_tag="O3Y_01340"
/db_xref="GeneID:11913217"
CDS 296378..296893
/locus_tag="O3Y_01340"
/note="COG3265 Gluconate kinase"
/codon_start=1
/transl_table=11
/product="thermoresistant gluconokinase"
/protein_id="YP_005332143.1"
/db_xref="GI:379740174"
/db_xref="GeneID:11913217"
/translation="MAGSSIIVMGVCACGKSTIGELLAKQTGRKFIDGDDLHPRANIQ
KMASGQPLNDEDRKPWLERIRDAAYSLESKNEHGVIVCSALKKQYRDQIREGNQNVTF
LFLDGSKELIMERMRARQGHFMKENMVNSQFETLERPDGEPQTLIIPIDCSVQEVVSC
AIQALQEQEGL"
misc_feature 296390..296875
/locus_tag="O3Y_01340"
/note="Shikimate kinase [Amino acid transport and
metabolism]; Region: AroK; COG0703"
/db_xref="CDD:223775"
misc_feature 296393..296830
/locus_tag="O3Y_01340"
/note="Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits; Region: GntK; cd02021"
/db_xref="CDD:238979"
misc_feature order(296405..296428,296474..296476,296480..296482,
296720..296722,296732..296734)
/locus_tag="O3Y_01340"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238979"
misc_feature order(296411..296416,296732..296734)
/locus_tag="O3Y_01340"
/note="Gluconate-6-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:238979"
gene 296890..298686
/locus_tag="O3Y_01345"
/db_xref="GeneID:11913218"
CDS 296890..298686
/locus_tag="O3Y_01345"
/EC_number="4.2.1.12"
/note="COG0129 Dihydroxyacid dehydratase/phosphogluconate
dehydratase"
/codon_start=1
/transl_table=11
/product="phosphogluconate dehydratase"
/protein_id="YP_005332144.1"
/db_xref="GI:379740175"
/db_xref="GeneID:11913218"
/translation="MIHPILAKVTQNLTERSREARAAFIARSQAQEKAGKGRTSLSCG
NLAHAVAASCSTEKKAILDFTRSNVAIVTSYNDMLSAHQPYQHYPDRIKMVLAEYGHT
AQVAGGVPAMCDGVTQGQPGMDMSLFSRDLIAQATALSLSHNVFDATLLLGICDKIAP
GQLMGALSYAHLPTAFMPAGLMATGISNEEKVDIRQKYAAGEVGKDALLNMECQAYHA
PGTCTFYGTANTNQLVFEAMGLMLPGSAFVHPHSALRQALNDDATVKIASMTQGSAQY
RPLYQVVTEKSLLNGIVALLASGGSTNHTIHMLAVARAAGILLTWQDISDLSDVVPLL
AKVYPNGPADMNAFQQAGGVPALMKRLHESKLLHSDVTPVFGEFRDQLTLPELVDGEL
CWKACEGTRDAQVIAASGECFQTTGGTKMLNGNLGRAVIKVSAVKEEQRIIEAPAVVF
QCQHQVEAAYQRGELNKDCIVVVTHNGPAANGMPELHKLMPILGNVQKAGFKVALVTD
GRLSGASGKIPSAIHVSPEAVRGGAIGLVRDGDLLRLDCTTGTLENLTDMSHRQALAL
DTERDQQMWGRELFKVMRQAVSSAEQGASFIV"
misc_feature 296893..298680
/locus_tag="O3Y_01345"
/note="phosphogluconate dehydratase; Validated; Region:
PRK09054"
/db_xref="CDD:181628"
misc_feature 296896..298674
/locus_tag="O3Y_01345"
/note="6-phosphogluconate dehydratase; Region: edd;
TIGR01196"
/db_xref="CDD:130264"
gene complement(298763..299761)
/locus_tag="O3Y_01350"
/db_xref="GeneID:11913219"
CDS complement(298763..299761)
/locus_tag="O3Y_01350"
/note="COG1609 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="gluconate utilization system gnt-I
transcriptional repressor"
/protein_id="YP_005332145.1"
/db_xref="GI:379740176"
/db_xref="GeneID:11913219"
/translation="MTKKQRATLQDVADQVGVTKMTVSRYLRSPDSVAAATREKIALA
VEALGYIENRAPAMLSKSSSKAIGILLPSLSNQIFASFVQGIEAVTKANGYETLLAHF
GYDEEEEERKIASLLAYQVDGLILTESHHTQRTLQMIASSGVPVVETMELPANPIDMA
VGMDHVEASYQAVKKIIAAGKRSIAYFGARLDTRTKLRMQGYDQAMQEAGLPIKHVLT
GSHSSFSLAAQLLDEAFARYPDLDGVFCTNDDIAIGTLLVAQQRGIRVPEQLSVIGYN
ALDIGRTITPKLTSVDSPRYAIGEKSAELLIAALKGERAEQQVVDMGYRFTAGESV"
misc_feature complement(298766..299755)
/locus_tag="O3Y_01350"
/note="gluconate operon transcriptional regulator;
Provisional; Region: PRK14987"
/db_xref="CDD:184949"
misc_feature complement(299579..299734)
/locus_tag="O3Y_01350"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature complement(order(299582..299587,299591..299596,
299603..299605,299612..299614,299651..299653,
299660..299665,299678..299680,299687..299692,
299696..299710,299732..299734))
/locus_tag="O3Y_01350"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature complement(299585..299614)
/locus_tag="O3Y_01350"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature complement(298769..299563)
/locus_tag="O3Y_01350"
/note="Ligand-binding domain of DNA transcription
repressor GntR specific for gluconate, a member of the
LacI-GalR family of bacterial transcription regulators;
Region: PBP1_GntR; cd01575"
/db_xref="CDD:107260"
misc_feature complement(order(298883..298885,298934..298936,
299096..299098,299168..299170,299273..299275,
299312..299314,299381..299383,299516..299518,
299525..299530))
/locus_tag="O3Y_01350"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107260"
misc_feature complement(order(298979..298984,298991..298993,
299003..299005,299087..299089,299402..299410,
299417..299419,299426..299428,299459..299461,
299465..299479,299498..299503,299507..299512,
299519..299527))
/locus_tag="O3Y_01350"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:107260"
gene complement(299900..300196)
/gene="fis"
/locus_tag="O3Y_01355"
/db_xref="GeneID:11913220"
CDS complement(299900..300196)
/gene="fis"
/locus_tag="O3Y_01355"
/note="COG2901 Factor for inversion stimulation Fis,
transcriptional activator"
/codon_start=1
/transl_table=11
/product="global DNA-binding transcriptional dual
regulator Fis"
/protein_id="YP_005332146.1"
/db_xref="GI:379740177"
/db_xref="GeneID:11913220"
/translation="MFEQNLTSEALTVTTVTSQDQITQKPLRDSVKASLKNYLAQLNG
QEVTELYELVLAEVEQPLLDTIMQYTRGNQTRAATMMGINRGTLRKKLKKYGMN"
misc_feature complement(299903..300196)
/gene="fis"
/locus_tag="O3Y_01355"
/note="Factor for inversion stimulation Fis,
transcriptional activator [Transcription / DNA
replication, recombination, and repair]; Region: Fis;
COG2901"
/db_xref="CDD:225454"
misc_feature complement(299903..300187)
/gene="fis"
/locus_tag="O3Y_01355"
/note="global DNA-binding transcriptional dual regulator
Fis; Provisional; Region: fis; PRK00430"
/db_xref="CDD:179020"
gene complement(300220..301188)
/locus_tag="O3Y_01360"
/db_xref="GeneID:11913221"
CDS complement(300220..301188)
/locus_tag="O3Y_01360"
/note="COG0042 tRNA-dihydrouridine synthase"
/codon_start=1
/transl_table=11
/product="NifR3/Smm1 family protein"
/protein_id="YP_005332147.1"
/db_xref="GI:379740178"
/db_xref="GeneID:11913221"
/translation="MKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSC
NPALWKTAKSQNRMVHEGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPA
KKVNKKLAGSALLRYPDVIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAED
CGIQALALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGA
DALMIGRPAQGRPWIFQEIQHFLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGP
RIARKHVSWYLQEHEQASAFRRTFNAIETADQQLDALEGYFDNVAS"
misc_feature complement(300226..301188)
/locus_tag="O3Y_01360"
/note="tRNA-dihydrouridine synthase B; Provisional;
Region: PRK10415"
/db_xref="CDD:182440"
misc_feature complement(300463..301158)
/locus_tag="O3Y_01360"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:239200"
misc_feature complement(order(300514..300519,300583..300585,
300589..300591,300682..300684,300772..300774,
300898..300900,300979..300981,301066..301068,
301138..301146))
/locus_tag="O3Y_01360"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239200"
misc_feature complement(order(300514..300516,300583..300588,
300673..300678,300682..300687,300766..300768,
300772..300774,300886..300891,300979..300981))
/locus_tag="O3Y_01360"
/note="active site"
/db_xref="CDD:239200"
misc_feature complement(order(300676..300678,300682..300684,
300766..300768,300889..300891))
/locus_tag="O3Y_01360"
/note="catalytic residues [active]"
/db_xref="CDD:239200"
misc_feature complement(order(300583..300588,300673..300675,
300685..300687,300772..300774,300886..300888))
/locus_tag="O3Y_01360"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239200"
gene complement(301328..302215)
/gene="prmA"
/locus_tag="O3Y_01365"
/db_xref="GeneID:11913222"
CDS complement(301328..302215)
/gene="prmA"
/locus_tag="O3Y_01365"
/EC_number="2.1.1.-"
/note="COG2264 Ribosomal protein L11 methylase"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11 methyltransferase"
/protein_id="YP_005332148.1"
/db_xref="GI:379740179"
/db_xref="GeneID:11913222"
/translation="MPWIQIKLNATNDNAEAIGDMLMEETGAVSVTFLDAKDTPVFEP
LPGETRLWGDTDVVALYEADMDTSLILQQIKASNMLAEGFAHKVEQVEDKDWEREWMD
NFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSG
KTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIEVYLPKD
QPEGLVADVVVANILAGPLRELSPIIKGLLKPGGQLAMSGILDTQAESVAEFYRDDLE
LDPIAEKSEWCRISGRKLG"
misc_feature complement(301337..302212)
/gene="prmA"
/locus_tag="O3Y_01365"
/note="Ribosomal protein L11 methyltransferase (PrmA);
Region: PrmA; pfam06325"
/db_xref="CDD:218990"
misc_feature complement(301445..301741)
/gene="prmA"
/locus_tag="O3Y_01365"
/note="Methyltransferase domain; Region: Methyltransf_18;
pfam12847"
/db_xref="CDD:221804"
gene complement(302424..303767)
/locus_tag="O3Y_01370"
/db_xref="GeneID:11913223"
CDS complement(302424..303767)
/locus_tag="O3Y_01370"
/EC_number="6.4.1.2"
/note="COG0439 Biotin carboxylase"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase biotin carboxylase
subunit"
/protein_id="YP_005332149.1"
/db_xref="GI:379740180"
/db_xref="GeneID:11913223"
/translation="MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLL
ADESICIGPAKSIDSYLNIPRIISAAEVTGAVAIHPGYGFLSENADFAEQVERSGFIF
VGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDGPLDNDEAKNKAHAKRIGYPVIIKA
SGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADG
QGNAIHLAERDCSMQRRHQKVVEEAPAPGITEEMRKFIGERCTRACIEIGYRGAGTFE
FLYENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSFKQEDIKIRGHA
VECRINAEDPERFLPCPGKIERFHAPGGMGVRWESHIYSGYTVPAHYDSMIGKLITYG
ENRDVAIARMRNALNEMIVEGIKTNIPLQQAIMADENFQKGGTNIHYLEKKLGIK"
misc_feature complement(302433..303767)
/locus_tag="O3Y_01370"
/note="acetyl-CoA carboxylase biotin carboxylase subunit;
Validated; Region: PRK08591"
/db_xref="CDD:236307"
misc_feature complement(303441..303764)
/locus_tag="O3Y_01370"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(302796..303425)
/locus_tag="O3Y_01370"
/note="Carbamoyl-phosphate synthase L chain, ATP binding
domain; Region: CPSase_L_D2; pfam02786"
/db_xref="CDD:190425"
misc_feature complement(302445..302762)
/locus_tag="O3Y_01370"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:214878"
gene complement(303782..304243)
/locus_tag="O3Y_01375"
/db_xref="GeneID:11913224"
CDS complement(303782..304243)
/locus_tag="O3Y_01375"
/EC_number="6.4.1.2"
/note="COG0511 Biotin carboxyl carrier protein"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit"
/protein_id="YP_005332150.1"
/db_xref="GI:379740181"
/db_xref="GeneID:11913224"
/translation="MDIRKIKKLIELVEESGIAELEISEGEESVRISRYGQPAPAPQV
HYAAAPAPVAAPAPVAQAAAVAEAPAAAKVPAGHKVLSPMVGTFYRSPSPDAKAFIEV
GQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQTVEFDQPLVVIE"
misc_feature complement(303785..304243)
/locus_tag="O3Y_01375"
/note="acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated; Region: PRK06302"
/db_xref="CDD:235777"
misc_feature complement(303788..304006)
/locus_tag="O3Y_01375"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature complement(order(303863..303865,303884..303892,
303917..303919))
/locus_tag="O3Y_01375"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature complement(303887..303889)
/locus_tag="O3Y_01375"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(304300..304752)
/locus_tag="O3Y_01380"
/db_xref="GeneID:11913225"
CDS complement(304300..304752)
/locus_tag="O3Y_01380"
/EC_number="4.2.1.10"
/note="COG0757 3-dehydroquinate dehydratase II"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate dehydratase"
/protein_id="YP_005332151.1"
/db_xref="GI:379740182"
/db_xref="GeneID:11913225"
/translation="MTAKSRILVLNGPNLNLLGLREPTHYGSQTLEQIVAILRDQAQK
ADIELEHLQSNREYELIEAIHQAFGKVDFIIINPAAFTHTSVALRDALLGVAIPFIEV
HLSNVHAREPFRHHSYLSDKAQGVICGLGAQGYEFALSAAIRALQAKQ"
misc_feature complement(304321..304692)
/locus_tag="O3Y_01380"
/note="Dehydroquinase (DHQase), type II. Dehydroquinase
(or 3-dehydroquinate dehydratase) catalyzes the reversible
dehydration of 3-dehydroquinate to form
3-dehydroshikimate. This reaction is part of two metabolic
pathways: the biosynthetic shikimate pathway...; Region:
DHQase_II; cd00466"
/db_xref="CDD:238262"
misc_feature complement(304321..304692)
/locus_tag="O3Y_01380"
/note="Dehydroquinase class II; Region: DHquinase_II;
pfam01220"
/db_xref="CDD:189894"
misc_feature complement(order(304411..304413,304438..304446,
304483..304485,304504..304506,304513..304518,
304522..304524,304675..304677,304690..304692))
/locus_tag="O3Y_01380"
/note="active site"
/db_xref="CDD:238262"
misc_feature complement(order(304411..304413,304471..304473,
304480..304485,304492..304494,304513..304515,
304558..304560,304567..304569,304576..304590))
/locus_tag="O3Y_01380"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:238262"
misc_feature complement(order(304321..304323,304330..304332,
304342..304344,304354..304356,304363..304371,
304375..304386,304390..304395,304426..304431,
304435..304437))
/locus_tag="O3Y_01380"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238262"
gene complement(305132..307081)
/locus_tag="O3Y_01385"
/db_xref="GeneID:11913226"
CDS complement(305132..307081)
/locus_tag="O3Y_01385"
/EC_number="6.2.1.1"
/note="COG0365 Acyl-coenzyme A synthetases/AMP-(fatty)
acid ligases"
/codon_start=1
/transl_table=11
/product="acetyl-CoA synthetase"
/protein_id="YP_005332152.1"
/db_xref="GI:379740183"
/db_xref="GeneID:11913226"
/translation="MSEAHIYPVKQNIKAHTHADNDTYLAMYQQSIKDPEGFWSEHGK
IVDWIKPFTKVKHTSFDPGHIDIRWFEDGTLNVSANCIDRHLATRGDQVAIIWEGDDP
TQDKTLTYKQLHQEVCRFANALKEQGVRKGDVVCIYMPMVPEAAVAMLACTRIGAVHT
IVFGGFSPEALAGRIIDSNAKLVITADEGVRGGRAVPLKKNVDEALCNPEVKNISKVM
VLKRTGGNVAWHEHRDIWWHEATAKASDNCPPEEMKAEDPLFILYTSGSTGKPKGVLH
TTGGYLVYATMTFKYVFDYQPNEVFWCTADVGWITGHSYLVYGPLANGAKTILFEGVP
NYPTTARMSEVVDKHKVNILYTAPTAIRALMAKGDEAIKGTSRDSLRIMGSVGEPINP
EAWEWYYRTIGNEKSPIVDTWWQTETGGILITPLPGATALKPGSATRPFFGVQPALVD
NMGEIVEGATEGNLVLLDSWPGQMRTVYGDHDRFEQTYFSTFKGMYFTGDGARRDEDG
YYWITGRVDDVLNVSGHRMGTAEIESALVAFNKIAEAAVVGVPHDIKGQAIYAYITLN
DGVYPSAELHKEVKDWVRKEIGAIATPDVLHWTDALPKTRSGKIMRRILRKIATGDTS
NLGDTSTLADPSVVDRLIAEKAQLK"
misc_feature complement(305135..307066)
/locus_tag="O3Y_01385"
/note="acetyl-CoA synthetase; Provisional; Region:
PRK00174"
/db_xref="CDD:234677"
misc_feature complement(305180..307000)
/locus_tag="O3Y_01385"
/note="Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme); Region: ACS;
cd05966"
/db_xref="CDD:213313"
misc_feature complement(order(305312..305317,305330..305332,
305504..305515,305537..305539,305546..305548,
305582..305584,305834..305851,305915..305926,
305993..305995,306002..306007,306077..306085,
306149..306154,306167..306169,306494..306496,
306500..306502,306509..306511,306587..306595))
/locus_tag="O3Y_01385"
/note="active site"
/db_xref="CDD:213313"
misc_feature complement(order(305315..305317,305330..305332,
305507..305515,305993..305995,306002..306007,
306077..306085,306149..306151,306167..306169,
306494..306496,306500..306502,306509..306511,
306587..306595))
/locus_tag="O3Y_01385"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:213313"
misc_feature complement(order(306266..306271,306275..306292,
306299..306301))
/locus_tag="O3Y_01385"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213313"
misc_feature complement(order(305504..305506,305537..305539,
305546..305548,305582..305584,305834..305851,
305915..305926,306149..306154))
/locus_tag="O3Y_01385"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213313"
misc_feature complement(order(305840..305842,305921..305926,
306149..306154))
/locus_tag="O3Y_01385"
/note="acetate binding site [chemical binding]; other
site"
/db_xref="CDD:213313"
gene complement(307284..307913)
/locus_tag="O3Y_01390"
/db_xref="GeneID:11913227"
CDS complement(307284..307913)
/locus_tag="O3Y_01390"
/note="COG0847 DNA polymerase III, epsilon subunit and
related 3'-5' exonucleases"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="YP_005332153.1"
/db_xref="GI:379740184"
/db_xref="GeneID:11913227"
/translation="MNWLLRRYWHAKLKGSPYQRLFETARHHEYVSLDCETTSLDPKR
AELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQDLHDGLSEKEALL
QLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYHDKLEKHLPNAY
FDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLTKGDLPQFIAPGV"
misc_feature complement(<307305..307868)
/locus_tag="O3Y_01390"
/note="DNA polymerase III, epsilon subunit and related
3'-5' exonucleases [DNA replication, recombination, and
repair]; Region: DnaQ; COG0847"
/db_xref="CDD:223916"
misc_feature complement(307335..307823)
/locus_tag="O3Y_01390"
/note="DEDDh 3'-5' exonuclease domain family; Region:
DEDDh; cd06127"
/db_xref="CDD:176648"
misc_feature complement(order(307359..307361,307374..307376,
307551..307559,307563..307568,307797..307799,
307803..307814))
/locus_tag="O3Y_01390"
/note="active site"
/db_xref="CDD:176648"
misc_feature complement(order(307359..307361,307374..307376,
307554..307559,307563..307568,307797..307799,
307803..307814))
/locus_tag="O3Y_01390"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176648"
misc_feature complement(order(307359..307361,307374..307376,
307551..307553,307806..307808,307812..307814))
/locus_tag="O3Y_01390"
/note="catalytic site [active]"
/db_xref="CDD:176648"
gene complement(307922..309745)
/locus_tag="O3Y_01395"
/db_xref="GeneID:11913228"
CDS complement(307922..309745)
/locus_tag="O3Y_01395"
/note="COG2905 Predicted signal-transduction protein
containing cAMP-binding and CBS domains"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332154.1"
/db_xref="GI:379740185"
/db_xref="GeneID:11913228"
/translation="MPDKFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHP
VTHLHILIKGTVEERSPDGKEVFAHYANDDLFDVRAMFEELSKHQYMALEDTLSYLLP
KSIFLQLYEQNGEFAAYFDNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILS
PEQPIHSVTQQLKERGIDAALVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPL
DTPVGEIATFPVLHVDEGDFLFNAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFS
THSHVLTLAIARAASIDELALAANKQRELVESLMSRGVRTRFVMELIAAVNEQIIEKA
FELVVPPALHDQCCLVVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTL
LQLGYPLCPGKVMVNNPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNR
ALLAPVKAHLQHLMAGQELILAEFTRPALNFSVPLTLFGNVKSSKQGIDIKQGGIFPI
VHGVRALSLEHAIDANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRLAQQLGNQ
HSTNQLDFKQLDRTERDLLRHSLHVVKKFKQWLGYHYQIRD"
misc_feature complement(307928..309745)
/locus_tag="O3Y_01395"
/note="Predicted signal-transduction protein containing
cAMP-binding and CBS domains [Signal transduction
mechanisms]; Region: COG2905"
/db_xref="CDD:225457"
misc_feature complement(309386..309715)
/locus_tag="O3Y_01395"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:237999"
misc_feature complement(order(309482..309490,309512..309517))
/locus_tag="O3Y_01395"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:237999"
misc_feature complement(order(309398..309406,309416..309424))
/locus_tag="O3Y_01395"
/note="flexible hinge region; other site"
/db_xref="CDD:237999"
misc_feature complement(308927..309286)
/locus_tag="O3Y_01395"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the bacterial CAP_ED (cAMP receptor protein effector
domain) family of transcription factors and the DUF294
domain. Members of CAP_ED, include CAP...; Region:
CBS_pair_CAP-ED_DUF294_assoc_bac; cd04589"
/db_xref="CDD:239962"
misc_feature complement(308360..308842)
/locus_tag="O3Y_01395"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature complement(order(308537..308539,308645..308647,
308651..308653))
/locus_tag="O3Y_01395"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
gene 310005..311195
/locus_tag="O3Y_01400"
/db_xref="GeneID:11913229"
CDS 310005..311195
/locus_tag="O3Y_01400"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="3-phenylpropionic acid transporter"
/protein_id="YP_005332155.1"
/db_xref="GI:379740186"
/db_xref="GeneID:11913229"
/translation="MFTPTPYGWISQYFIGFFFAYGVYLPFWSLWFEDQGVSATDIGV
LVGIGFATRCVANLVLTPRLHRVEQLMPALRWLSFAAMLFVGFHFFTGGSFWLMALAT
VLFNLCCGPVVPISDAMANYYAKLKMLDYGRTRLWGSIAFIAGSTVVGFLVAKWGSLM
ILYTALVGVAVSWLLSLRQITPMPVTEHEAHAVRPKLKELLTEWPVVKFLLLVALIQG
SHAAYYSFGSIYWKQAGHSEDIIGYLWSLGVVAEVLVFAFSKRWFAGWSLRTLFFVAS
LGVIARWGLTASTTTILALVAIQLLHGVTFAIAHIAAIQYIQHAPQNKMVALQALYNA
IPLGAVIAAVTTLSGWGYEHWGAAVFWAMAAMGGLALLIRVDTPPSTVQDGNALKAEP
EAQN"
misc_feature 310008..311147
/locus_tag="O3Y_01400"
/note="putative 3-phenylpropionic acid transporter;
Provisional; Region: PRK11128"
/db_xref="CDD:236856"
misc_feature 310020..310250
/locus_tag="O3Y_01400"
/note="MFS_1 like family; Region: MFS_1_like; pfam12832"
/db_xref="CDD:193307"
gene 311288..314731
/locus_tag="O3Y_01405"
/db_xref="GeneID:11913230"
CDS 311288..314731
/locus_tag="O3Y_01405"
/note="COG0591 Na+/proline symporter"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="YP_005332156.1"
/db_xref="GI:379740187"
/db_xref="GeneID:11913230"
/translation="MQGWLVIPVSLAYLGVLFLIAWYGDRQTRWLANWRPWIYSLSIA
VYCTSWTFYGTVGQASVNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADF
IAARYGKSQGLAVAVTVIAVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSW
FVVLALALFTMLFGTRHIDNTEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG
LELSTIAASTYQAPNWPTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFP
VYLLLMSLFVLPIAWTGQGLLPNTSPDTFVISLPVFAGAHDIALLAFLGGTSAASGMV
IVSTIALAIMVSNDLVMPLLLRRMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYL
VLDSIPSLSAIGFLSFSAITQFAPAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSA
TDMLAGDASNNVLLWVITPPDWLVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLS
ERLQAAAFVGTPLPENENMSLYQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRET
LLPNQQASSALIRHTERVLAGVFGASSAKLVLTSALQGRKMQLEEVATIVDEASELYD
FSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNA
QQGLCGPGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDI
TVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVTATQRSERESQSKSRFLAAVSH
DLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESALGAAEDLISDLLDISRLESGKID
LHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSLLWVHSDPKLLRRVIQNFLTNAF
RYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQQEIFEEFNRGGQVRSDQGLGLG
LAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQPMPSSLTQTVAMVNEKGSELQHL
RVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKALEGQWIPDVILSDYRLDNGR
TGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFRFMAKPIKPLKLRALLNSL
S"
misc_feature 311288..312802
/locus_tag="O3Y_01405"
/note="Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only]; Region:
PutP; COG0591"
/db_xref="CDD:223664"
misc_feature order(311417..311419,311426..311428,312287..312289,
312296..312301)
/locus_tag="O3Y_01405"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212031"
misc_feature 313187..313531
/locus_tag="O3Y_01405"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:221813"
misc_feature 313196..313507
/locus_tag="O3Y_01405"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature order(313244..313246,313256..313258,313274..313276,
313316..313324,313352..313354,313439..313441)
/locus_tag="O3Y_01405"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(313307..313309,313319..313321,313370..313372,
313382..313387)
/locus_tag="O3Y_01405"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature <313661..314317
/locus_tag="O3Y_01405"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature 313661..>313789
/locus_tag="O3Y_01405"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(313661..313663,313673..313675,313685..313687,
313694..313696,313706..313708,313715..313717,
313763..313765,313775..313777,313784..313786)
/locus_tag="O3Y_01405"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 313679..313681
/locus_tag="O3Y_01405"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 313991..314296
/locus_tag="O3Y_01405"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(314009..314011,314021..314023,314030..314032,
314099..314101,314105..314107,314111..314113,
314117..314122,314195..314206,314252..314254,
314258..314260,314273..314278,314282..314284)
/locus_tag="O3Y_01405"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 314021..314023
/locus_tag="O3Y_01405"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(314111..314113,314117..314119,314195..314197,
314201..314203)
/locus_tag="O3Y_01405"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 314381..314719
/locus_tag="O3Y_01405"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 314384..314725
/locus_tag="O3Y_01405"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(314393..314398,314528..314530,314555..314557,
314618..314620,314672..314674,314681..314686)
/locus_tag="O3Y_01405"
/note="active site"
/db_xref="CDD:238088"
misc_feature 314528..314530
/locus_tag="O3Y_01405"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(314537..314542,314549..314557)
/locus_tag="O3Y_01405"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 314681..314689
/locus_tag="O3Y_01405"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene complement(314854..316347)
/locus_tag="O3Y_01410"
/db_xref="GeneID:11913231"
CDS complement(314854..316347)
/locus_tag="O3Y_01410"
/EC_number="3.6.1.40"
/note="COG0248 Exopolyphosphatase"
/codon_start=1
/transl_table=11
/product="guanosine pentaphosphate phosphohydrolase"
/protein_id="YP_005332157.1"
/db_xref="GI:379740188"
/db_xref="GeneID:11913231"
/translation="MSQAVSSPLYAAIDLGSNSFHMLVVRHIDGSVQTMAKIKRKVRL
AAGLDEHNALSLDAMQRGWDCLSLFAERLQDIPAENIRIVGTATLRTATNAGEFIAKA
NQILGHPIDVISGEEEAATIYKGVAHTSGGLGRRLVVDIGGASTELIIGEGFEAKALT
SLKMGCVTWLERHFKDRQLTATNFNNAILAAKQMLDPILTQYTELGWNVCVGASGTVQ
ALQEIMLAQGMDEVITLTKLKRLQKQAMLADHLEELDIEGLTLERALVFPSGLSILIA
IFESLNIEAMTLAGGALREGLVYEMVQDLRQEDIRARTIRCVQTRYQIDSAYGDQVAT
LASKLLAQCGGEAWINEPQAEMLLRTAAKLHEIGLTIDFKKGGEHSAYLLQHLDLPGY
TRAQKHYLGEIVRRYREQLTSLPEQYALSGTSGKRVLRLLRLAVLLSHRRSPALEPMV
ELSAQEDKLTLTLDGEWLAKNPLTRTELELEANRQTDIGWPLSIECH"
misc_feature complement(314857..316341)
/locus_tag="O3Y_01410"
/note="guanosine pentaphosphate phosphohydrolase;
Provisional; Region: PRK11031"
/db_xref="CDD:236826"
misc_feature complement(315445..316281)
/locus_tag="O3Y_01410"
/note="Ppx/GppA phosphatase family; Region: Ppx-GppA;
pfam02541"
/db_xref="CDD:202276"
gene complement(316355..317671)
/locus_tag="O3Y_01415"
/db_xref="GeneID:11913232"
CDS complement(316355..317671)
/locus_tag="O3Y_01415"
/note="COG0513 Superfamily II DNA and RNA helicases"
/codon_start=1
/transl_table=11
/product="ATP-dependent RNA helicase RhlB"
/protein_id="YP_005332158.1"
/db_xref="GI:379740189"
/db_xref="GeneID:11913232"
/translation="MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLL
SGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFN
DAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQ
AVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEH
VVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHL
AADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLP
DDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSALLTD
LPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPKKEA"
misc_feature complement(316457..317668)
/locus_tag="O3Y_01415"
/note="ATP-dependent RNA helicase RhlB; Provisional;
Region: PRK04837"
/db_xref="CDD:235314"
misc_feature complement(317015..317641)
/locus_tag="O3Y_01415"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:238167"
misc_feature complement(317492..317506)
/locus_tag="O3Y_01415"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238167"
misc_feature complement(317168..317179)
/locus_tag="O3Y_01415"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:238167"
misc_feature complement(317072..317080)
/locus_tag="O3Y_01415"
/note="motif III; other site"
/db_xref="CDD:238167"
misc_feature complement(316595..316975)
/locus_tag="O3Y_01415"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature complement(order(316727..316735,316808..316813,
316871..316882))
/locus_tag="O3Y_01415"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature complement(order(316625..316627,316634..316636,
316646..316648,316709..316711))
/locus_tag="O3Y_01415"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
gene 317783..318109
/locus_tag="O3Y_01420"
/db_xref="GeneID:11913233"
CDS 317783..318109
/locus_tag="O3Y_01420"
/note="COG0526 Thiol-disulfide isomerase and thioredoxins"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_005332159.1"
/db_xref="GI:379740190"
/db_xref="GeneID:11913233"
/translation="MSDKILQLTDDGFENDVIKAAGPVLVDFWAEWCGPCKMIAPILD
EVADEYAGKLTIGKLNIDHNAGTPPKFGIRGIPTLLLFKDGSVVATKVGALSKTQLKE
FLDANL"
misc_feature 317825..318097
/locus_tag="O3Y_01420"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:239245"
misc_feature 317849..318043
/locus_tag="O3Y_01420"
/note="Thioredoxin-like; Region: Thioredoxin_8; pfam13905"
/db_xref="CDD:222448"
misc_feature order(317879..317881,317888..317890)
/locus_tag="O3Y_01420"
/note="catalytic residues [active]"
/db_xref="CDD:239245"
gene 318307..319566
/gene="rho"
/locus_tag="O3Y_01425"
/db_xref="GeneID:11913234"
CDS 318307..319566
/gene="rho"
/locus_tag="O3Y_01425"
/note="COG1158 Transcription termination factor"
/codon_start=1
/transl_table=11
/product="transcription termination factor Rho"
/protein_id="YP_005332160.1"
/db_xref="GI:379740191"
/db_xref="GeneID:11913234"
/translation="MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAK
SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR
PPKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITAR
VLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTE
MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNT
VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEE
FKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGE
TDAMEFLIDKLAMTKTNDEFFDAMRRQ"
misc_feature 318307..319560
/gene="rho"
/locus_tag="O3Y_01425"
/note="transcription termination factor Rho; Provisional;
Region: rho; PRK09376"
/db_xref="CDD:236490"
misc_feature 318319..318447
/gene="rho"
/locus_tag="O3Y_01425"
/note="Rho termination factor, N-terminal domain; Region:
Rho_N; smart00959"
/db_xref="CDD:198027"
misc_feature 318457..318660
/gene="rho"
/locus_tag="O3Y_01425"
/note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
protein is a transcription termination factor in most
bacteria. In bacteria, there are two distinct mechanisms
for mRNA transcription termination. In intrinsic
termination, RNA polymerase and nascent mRNA...; Region:
Rho_CSD; cd04459"
/db_xref="CDD:239906"
misc_feature order(318472..318474,318478..318480,318490..318492,
318496..318498,318502..318504,318538..318540,
318544..318546,318619..318621,318628..318636)
/gene="rho"
/locus_tag="O3Y_01425"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239906"
misc_feature 318772..319518
/gene="rho"
/locus_tag="O3Y_01425"
/note="Transcription termination factor rho is a bacterial
ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
monomer consists of an N-terminal domain of the OB fold,
which is responsible for binding to cysteine rich
nucleotides. This alignment is of the...; Region:
rho_factor; cd01128"
/db_xref="CDD:238548"
misc_feature order(318823..318825,319156..319158,319189..319191,
319198..319203,319210..319212,319219..319221,
319228..319230,319303..319308,319312..319326,
319330..319332,319402..319407,319447..319449,
319459..319461)
/gene="rho"
/locus_tag="O3Y_01425"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238548"
misc_feature 318838..318861
/gene="rho"
/locus_tag="O3Y_01425"
/note="Walker A motif; other site"
/db_xref="CDD:238548"
misc_feature order(318847..318849,318853..318864,319369..319371)
/gene="rho"
/locus_tag="O3Y_01425"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238548"
misc_feature 319087..319101
/gene="rho"
/locus_tag="O3Y_01425"
/note="Walker B motif; other site"
/db_xref="CDD:238548"
gene 319665..320657
/locus_tag="O3Y_01430"
/db_xref="GeneID:11913235"
CDS 319665..320657
/locus_tag="O3Y_01430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332161.1"
/db_xref="GI:379740192"
/db_xref="GeneID:11913235"
/translation="MQQGWLCLVLLFLLGLPPYALGGDITATERELWLAEPQTQQKAE
ELYLLALHNEVDRLQFNLQRISYPAQEVVRFLLLQKFEQGQLILTEELAVFIAAQKSQ
TPNYLIAERGDGYEFSVPAFDYAAIAHRLLKQAQQQQDIMMFVLQAENGELNLREWIS
GSSAQSVDVRQRLLLTELHRLSPQAMERLIAQITTEQVTSWLPSATVMVQFARRSQSH
ALYQRLWLMKANDEIRQEVARLGAQADGFAKQQLMLAVENPSLKQEALQALIEIRPMS
MEVEQFLIEKLGQSENASQVASMLAQSGYQGWLHELVSSNRAVKQQAILAVLNP"
gene 320739..322580
/locus_tag="O3Y_01435"
/db_xref="GeneID:11913236"
CDS 320739..322580
/locus_tag="O3Y_01435"
/note="COG0043 3-polyprenyl-4-hydroxybenzoate
decarboxylase and related decarboxylases"
/codon_start=1
/transl_table=11
/product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase"
/protein_id="YP_005332162.1"
/db_xref="GI:379740193"
/db_xref="GeneID:11913236"
/translation="MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKG
PALLFENPLGYDFPVLTNLFGTPERVAMGMGRQQVQELRDVGQWLAYLKEPEPPRGLK
ELIEKLPVFKQVLNMPVKRLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGL
TITRGPHKKRQNLGIYRQQKIARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAF
GADPATILGAVTPVPDTLSEYAFAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDP
NEFADEGPYGDHTGYYNEVERHHVFTVTHVTMRNKPIYHSTYTGRPPDEPAVLGVALN
EVFVPILQKQFPEIADFYLPPEGCSYRMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYT
KFVIVCDEQVNARDWPQVIAAMVNHMSPLRDTLFIEHTPIDSLDFASPVVGLGSKIGL
DATAKWPAELAVSNSDQSDKTTELSLEALKACLSDEADVLDVALPEAANDKLVLLLIN
KQEAGQAQQLLQRVVDKLNGDSPLKFVILCDDDVNIHDWNDVIWAMTTRMDPARDSLR
IVGQDLICFDATNKLPDEVEREWGTPIRKDPKLVAKIDSLWDELGIV"
misc_feature 320739..322115
/locus_tag="O3Y_01435"
/note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
Region: UbiD; cl00311"
/db_xref="CDD:241772"
misc_feature <322221..322577
/locus_tag="O3Y_01435"
/note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
Region: UbiD; cl00311"
/db_xref="CDD:241772"
gene 322577..322846
/locus_tag="O3Y_01440"
/db_xref="GeneID:11913237"
CDS 322577..322846
/locus_tag="O3Y_01440"
/note="COG0633 Ferredoxin"
/codon_start=1
/transl_table=11
/product="ferredoxin"
/protein_id="YP_005332163.1"
/db_xref="GI:379740194"
/db_xref="GeneID:11913237"
/translation="MTYTVRIVPNDRQFIIHSGETVLDAALNQQIAFPHRCRIGACAA
CLCKLVEGEVEYELEPLLTEQEKATGWIFACQACAITDLVLTFEE"
misc_feature 322580..322843
/locus_tag="O3Y_01440"
/note="Ferredoxin [Energy production and conversion];
Region: Fdx; COG0633"
/db_xref="CDD:223706"
misc_feature 322586..322834
/locus_tag="O3Y_01440"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:238126"
misc_feature order(322673..322678,322685..322687,322694..322696,
322700..322711,322796..322801)
/locus_tag="O3Y_01440"
/note="catalytic loop [active]"
/db_xref="CDD:238126"
misc_feature order(322685..322687,322700..322702,322709..322711,
322799..322801)
/locus_tag="O3Y_01440"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:238126"
gene 322862..323572
/gene="fre"
/locus_tag="O3Y_01445"
/db_xref="GeneID:11913238"
CDS 322862..323572
/gene="fre"
/locus_tag="O3Y_01445"
/note="COG0543 2-polyprenylphenol hydroxylase and related
flavodoxin oxidoreductases"
/codon_start=1
/transl_table=11
/product="FMN reductase"
/protein_id="YP_005332164.1"
/db_xref="GI:379740195"
/db_xref="GeneID:11913238"
/translation="MIIQCQVKSVQPLATHTYQILLQPEHAVAYQAGQYLMVVMGEKD
KRPFSLASSPCRSNGELELHIGAADHSAFAHQVVEKFQQAHLNQTWVEVDVPHGNAAL
QESERPLLLIAGGTGFSYVRSILDHCLSQGKTQPIYLYWGARDAAQLYALNELQELAK
QHAHLQVVPVVEQAQDDWAGKVGNVLQAINNDFASLEAFDIYIAGRFEMAGAAREQFT
QNKQARRDRMFADAYAFI"
misc_feature 322862..323569
/gene="fre"
/locus_tag="O3Y_01445"
/note="FMN reductase; Validated; Region: fre; PRK08051"
/db_xref="CDD:236142"
misc_feature 322874..323560
/gene="fre"
/locus_tag="O3Y_01445"
/note="NAD(P)H dependent flavin oxidoreductases use flavin
as a substrate in mediating electron transfer from iron
complexes or iron proteins. Structurally similar to
ferredoxin reductases, but with only 15% sequence
identity, flavin reductases reduce FAD, FMN; Region:
flavin_oxioreductase; cd06189"
/db_xref="CDD:99786"
misc_feature order(322964..322966,322997..323008,323051..323059,
323063..323065,323075..323083,323207..323209,
323216..323218,323552..323554,323558..323560)
/gene="fre"
/locus_tag="O3Y_01445"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99786"
misc_feature order(322997..322999,323003..323008)
/gene="fre"
/locus_tag="O3Y_01445"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99786"
misc_feature order(323072..323074,323081..323083,323090..323092,
323111..323113,323147..323149,323153..323155)
/gene="fre"
/locus_tag="O3Y_01445"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99786"
misc_feature order(323192..323194,323204..323215,323219..323221)
/gene="fre"
/locus_tag="O3Y_01445"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99786"
misc_feature order(323207..323212,323285..323293,323474..323479)
/gene="fre"
/locus_tag="O3Y_01445"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99786"
gene 324152..325695
/locus_tag="O3Y_r13487"
/db_xref="GeneID:11913239"
rRNA 324152..325695
/locus_tag="O3Y_r13487"
/product="16S ribosomal RNA"
/db_xref="GeneID:11913239"
gene 325756..325832
/locus_tag="O3Y_t13297"
/db_xref="GeneID:11913240"
tRNA 325756..325832
/locus_tag="O3Y_t13297"
/product="tRNA-Ile"
/db_xref="GeneID:11913240"
gene 325841..325916
/locus_tag="O3Y_t13299"
/db_xref="GeneID:11913241"
tRNA 325841..325916
/locus_tag="O3Y_t13299"
/product="tRNA-Ala"
/db_xref="GeneID:11913241"
gene 326202..329099
/locus_tag="O3Y_r13503"
/db_xref="GeneID:11913242"
rRNA 326202..329099
/locus_tag="O3Y_r13503"
/product="23S ribosomal RNA"
/db_xref="GeneID:11913242"
gene 329220..329335
/locus_tag="O3Y_r13469"
/db_xref="GeneID:11913243"
rRNA 329220..329335
/locus_tag="O3Y_r13469"
/product="5S ribosomal RNA"
/db_xref="GeneID:11913243"
gene 329361..329437
/locus_tag="O3Y_t13301"
/db_xref="GeneID:11913244"
tRNA 329361..329437
/locus_tag="O3Y_t13301"
/product="tRNA-Asp"
/db_xref="GeneID:11913244"
gene complement(329722..331062)
/gene="pssA"
/locus_tag="O3Y_01450"
/db_xref="GeneID:11913245"
CDS complement(329722..331062)
/gene="pssA"
/locus_tag="O3Y_01450"
/EC_number="2.7.8.8"
/note="COG1502
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi
n synthases and related enzymes"
/codon_start=1
/transl_table=11
/product="phosphatidylserine synthase"
/protein_id="YP_005332165.1"
/db_xref="GI:379740196"
/db_xref="GeneID:11913245"
/translation="MIARRNPIEQLPAIAQDPDKFGVLLSAAEFRTHLVESIRQARKR
IYLVALYLENDDAGREILTELYAAKQRNPGLEIHICVDWHRAQRGLIGAAESEGNAAM
YRDFAQQHEHCIPVYGIPVRGREVFGVLHLKGFIIDDQVIYSGASLNNVYLQFHGRYR
FDRYHTLENAELADSMVHFIQQEMLAHPAVNNLACGSKPTTKEIKSDIRQFRASLAQA
NYQFAKQKVNEGQVAVTPLVGLGRRRNRLNQSIIQLLASAKDEVFICTPYFNFPPSIA
KEVKKALRRGVKVHIVIGDKTANDFYIAPEEPFKTIGGLPYLYELNLRRFAKANEAHI
ASRKLSIHLWKHENHSFHLKGIWVDKRYMLITGNNLNPRAWKLDLENAILIRDDYHHL
TTKFEAEIDNILQHTQLICTYKQIEKPEHYPEKVQRLVRRIMRLKADRVLKQIL"
misc_feature complement(329725..331050)
/gene="pssA"
/locus_tag="O3Y_01450"
/note="phosphatidylserine synthase; Provisional; Region:
pssA; PRK09428"
/db_xref="CDD:236510"
misc_feature complement(330514..331032)
/gene="pssA"
/locus_tag="O3Y_01450"
/note="Catalytic domain, repeat 1, of phosphatidylserine
synthases from gram-negative bacteria; Region:
PLDc_PSS_G_neg_1; cd09134"
/db_xref="CDD:197232"
misc_feature complement(order(330514..330516,330526..330528,
330535..330540,330550..330552,330562..330564,
330568..330570,330574..330588,330628..330630,
330634..330636,330664..330684,330694..330708,
330994..330996,331000..331002))
/gene="pssA"
/locus_tag="O3Y_01450"
/note="domain interface [polypeptide binding]; other site"
/db_xref="CDD:197232"
misc_feature complement(order(330577..330579,330622..330624,
330628..330630,330664..330666,330670..330672))
/gene="pssA"
/locus_tag="O3Y_01450"
/note="putative active site [active]"
/db_xref="CDD:197232"
misc_feature complement(330670..330672)
/gene="pssA"
/locus_tag="O3Y_01450"
/note="catalytic site [active]"
/db_xref="CDD:197232"
misc_feature complement(329725..330369)
/gene="pssA"
/locus_tag="O3Y_01450"
/note="Catalytic domain, repeat 2, of phosphatidylserine
synthases from gram-negative bacteria; Region:
PLDc_PSS_G_neg_2; cd09136"
/db_xref="CDD:197234"
misc_feature complement(order(329854..329859,329866..329868,
329878..329880,329887..329889,329905..329907,
329911..329934,329944..329946,329962..329973,
330004..330018,330343..330345,330349..330369))
/gene="pssA"
/locus_tag="O3Y_01450"
/note="domain interface [polypeptide binding]; other site"
/db_xref="CDD:197234"
misc_feature complement(order(329923..329925,329956..329958,
329962..329964,330001..330003,330007..330009))
/gene="pssA"
/locus_tag="O3Y_01450"
/note="putative active site [active]"
/db_xref="CDD:197234"
misc_feature complement(330007..330009)
/gene="pssA"
/locus_tag="O3Y_01450"
/note="catalytic site [active]"
/db_xref="CDD:197234"
gene complement(331157..331579)
/locus_tag="O3Y_01455"
/db_xref="GeneID:11913246"
CDS complement(331157..331579)
/locus_tag="O3Y_01455"
/note="COG0454 Histone acetyltransferase HPA2 and related
acetyltransferases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332166.1"
/db_xref="GI:379740197"
/db_xref="GeneID:11913246"
/translation="MLEFQQFAPIKLPLIKRFYKNHYPGSKPKSDEQVIVALKDREIV
GVVRFRMIGQYRLLTGMAVEAQSRQQGIGKQLLDYCQKQWLNPATFCFAYTHLEHFYQ
QGHFIQIAPHALPAELHLLFERYSRSGKDLIPMQYQAK"
misc_feature complement(331331..331480)
/locus_tag="O3Y_01455"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(331358..331363,331391..331399))
/locus_tag="O3Y_01455"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
misc_feature complement(331253..>331393)
/locus_tag="O3Y_01455"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cl17182"
/db_xref="CDD:247736"
gene 331616..332689
/gene="murB"
/locus_tag="O3Y_01460"
/db_xref="GeneID:11913247"
CDS 331616..332689
/gene="murB"
/locus_tag="O3Y_01460"
/EC_number="1.1.1.158"
/note="COG0812 UDP-N-acetylmuramate dehydrogenase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylenolpyruvoylglucosamine reductase"
/protein_id="YP_005332167.1"
/db_xref="GI:379740198"
/db_xref="GeneID:11913247"
/translation="MASLSYPKTTMQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLK
ALYCSAEWASLPKLIIGKGSNMLFTCHYTGMIVVNRLNGIEHQQDDDYHRLHVAGGED
WPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNIGAYGVEFKDVCDYVEYLCLETGTV
KRLTMEECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHD
VYQRVCATRMEKLPDPAVMGNAGSFFKNPVISQQAFARLQIEHPDVVAYPAEQGVKVA
AGWLIDQAGLKGHQIGGAKVHPKQALVIVNTGDASAQDVLMLAADIQQRVFNCYGIEL
EHEVRFIGESEETNLKQWMSEQA"
misc_feature 331646..332638
/gene="murB"
/locus_tag="O3Y_01460"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional; Region: murB; PRK00046"
/db_xref="CDD:234593"
misc_feature 331706..332107
/gene="murB"
/locus_tag="O3Y_01460"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:216574"
misc_feature 332270..332641
/gene="murB"
/locus_tag="O3Y_01460"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase,
C-terminal domain; Region: MurB_C; pfam02873"
/db_xref="CDD:111727"
gene 332686..333648
/locus_tag="O3Y_01465"
/db_xref="GeneID:11913248"
CDS 332686..333648
/locus_tag="O3Y_01465"
/EC_number="6.3.4.15"
/note="COG1654 Biotin operon repressor"
/codon_start=1
/transl_table=11
/product="bifunctional biotin--[acetyl-CoA-carboxylase]
synthetase/biotin operon repressor"
/protein_id="YP_005332168.1"
/db_xref="GI:379740199"
/db_xref="GeneID:11913248"
/translation="MKEHSAKLAILKQLADGDFHSGEVLGAQLGISRAAISKHIQGIR
DWGVDVFRVQGKGYQLAQAMTLLDQSVIQSQVNNPVELHPIIGSTNQYLLDHVETLVS
GTVCLAEYQASGRGRRGRHWVSPFGANLYLSIYWRLDAGMAAAMGLSLVVGVAIVEAL
EAMGVDGVKLKWPNDLYYQDKKLAGILVEMSGQAGAAAHLVIGMGINLAMRDNEGNID
QPWISLAEVTGQSRIDRNALAINLIAALDRTLRQYEISGMQNFVERWNRWDNFIGRPV
KLLMGANEVRGIERGIDEHGGVLLETEEGLKSFIGGEISLRKND"
misc_feature 332689..333645
/locus_tag="O3Y_01465"
/note="bifunctional biotin--[acetyl-CoA-carboxylase]
synthetase/biotin operon repressor; Provisional; Region:
PRK11886"
/db_xref="CDD:237010"
misc_feature 332695..332889
/locus_tag="O3Y_01465"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature order(332698..332700,332707..332712,332719..332724,
332731..332733,332824..332826,332878..332883,
332887..332889)
/locus_tag="O3Y_01465"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238042"
misc_feature order(332698..332706,332743..332751,332779..332790,
332794..332799,332806..332811,332815..332820,
332836..332844,332857..332859)
/locus_tag="O3Y_01465"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature order(332743..332745,332752..332754,332878..332880)
/locus_tag="O3Y_01465"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
misc_feature 332941..333306
/locus_tag="O3Y_01465"
/note="Biotin/lipoate A/B protein ligase family; Region:
BPL_LplA_LipB; pfam03099"
/db_xref="CDD:217367"
misc_feature 333496..333636
/locus_tag="O3Y_01465"
/note="Biotin protein ligase C terminal domain; Region:
BPL_C; pfam02237"
/db_xref="CDD:216943"
gene complement(333698..334621)
/locus_tag="O3Y_01470"
/db_xref="GeneID:11913249"
CDS complement(333698..334621)
/locus_tag="O3Y_01470"
/EC_number="2.7.1.33"
/note="COG1072 Panthothenate kinase"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="YP_005332169.1"
/db_xref="GI:379740200"
/db_xref="GeneID:11913249"
/translation="MSPYLTFDRQHWAQLRNSVPMTLSESDLKELQGINDHLSMTEAV
EIYLPLARLLNLYVAARQSRNGVLHQFLGNTESAPPFVIGIAGSVAVGKSTTARLLKA
LLSRWENHPKVELITTDGFLYPNKVLTERGIMHKKGFPESYDIRRLVEFVSEVKAGQP
NVTAPVYSHLTYDITDEMKVVDRPDVLIIEGLNVLQSGMDYPHDPHRVFISDFLDFSI
YVDADSQLIEKWYIERFMKFRQGAFKKPGSYFSHYTALTEAQAEQKARSIWETINGKN
LVENILPTKGRAHLILRKGLNHTVEEVLLRK"
misc_feature complement(333701..334621)
/locus_tag="O3Y_01470"
/note="pantothenate kinase; Provisional; Region: PRK05439"
/db_xref="CDD:235466"
misc_feature complement(333707..334378)
/locus_tag="O3Y_01470"
/note="Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps in
coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point...;
Region: PanK; cd02025"
/db_xref="CDD:238983"
misc_feature complement(order(333728..333730,333740..333742,
333920..333922,333932..333934,334334..334345,
334352..334354))
/locus_tag="O3Y_01470"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238983"
misc_feature complement(order(333728..333730,333908..333910,
333920..333922,334115..334117,334328..334330,
334340..334345))
/locus_tag="O3Y_01470"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:238983"
misc_feature complement(order(334052..334054,334340..334342))
/locus_tag="O3Y_01470"
/note="Mg2+-binding site [ion binding]; other site"
/db_xref="CDD:238983"
gene 334830..334905
/locus_tag="O3Y_t13303"
/db_xref="GeneID:11913250"
tRNA 334830..334905
/locus_tag="O3Y_t13303"
/product="tRNA-Thr"
/db_xref="GeneID:11913250"
gene 334941..335025
/locus_tag="O3Y_t13305"
/db_xref="GeneID:11913251"
tRNA 334941..335025
/locus_tag="O3Y_t13305"
/product="tRNA-Tyr"
/db_xref="GeneID:11913251"
gene 335061..335135
/locus_tag="O3Y_t13307"
/db_xref="GeneID:11913252"
tRNA 335061..335135
/locus_tag="O3Y_t13307"
/product="tRNA-Gly"
/db_xref="GeneID:11913252"
gene 335149..335224
/locus_tag="O3Y_t13309"
/db_xref="GeneID:11913253"
tRNA 335149..335224
/locus_tag="O3Y_t13309"
/product="tRNA-Thr"
/db_xref="GeneID:11913253"
gene 335337..336521
/locus_tag="O3Y_01475"
/db_xref="GeneID:11913254"
CDS 335337..336521
/locus_tag="O3Y_01475"
/note="COG0050 GTPases - translation elongation factors"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_005332170.1"
/db_xref="GI:379740201"
/db_xref="GeneID:11913254"
/translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGGKA
RDFASIDNAPEERERGITINTSHVEYDTPNRHYAHVDCPGHADYVKNMITGAAQMDGG
ILVVAATDGRMPQTREHILLGRQVGIPYIIVFMNKCDMVDDEELLELVEMEVRELLSE
YDFPGDDLPVIQGSALGALNGEAQWEAKIVELAEALDTYIPEPERAVDMAFLMPIEDV
FSIQGRGTVVTGRIERGILKVGDEVAIVGIKETVKTTCTGVEMFRKLLDEGRAGENVG
ALLRGTKREEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFR
TTDVTGSIELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKI
IA"
misc_feature 335337..336518
/locus_tag="O3Y_01475"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 335367..335945
/locus_tag="O3Y_01475"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 335391..335414
/locus_tag="O3Y_01475"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(335394..335396,335400..335402,335412..335417,
335424..335426,335433..335438,335448..335450,
335532..335537,335589..335594,335661..335666,
335670..335681,335688..335690,335781..335783,
335793..335795,335871..335876)
/locus_tag="O3Y_01475"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(335400..335417,335475..335477,335742..335747,
335751..335753,335856..335864)
/locus_tag="O3Y_01475"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 335502..335534
/locus_tag="O3Y_01475"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 335520..335522
/locus_tag="O3Y_01475"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 335577..335588
/locus_tag="O3Y_01475"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 335583..335639
/locus_tag="O3Y_01475"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 335742..335753
/locus_tag="O3Y_01475"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 335856..335864
/locus_tag="O3Y_01475"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 335967..336227
/locus_tag="O3Y_01475"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 336234..336503
/locus_tag="O3Y_01475"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(336270..336272,336276..336284,336336..336338,
336456..336464,336492..336494)
/locus_tag="O3Y_01475"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 336745..337125
/gene="secE"
/locus_tag="O3Y_01480"
/db_xref="GeneID:11913255"
CDS 336745..337125
/gene="secE"
/locus_tag="O3Y_01480"
/note="COG0690 Preprotein translocase subunit SecE"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_005332171.1"
/db_xref="GI:379740202"
/db_xref="GeneID:11913255"
/translation="MKANNAEAPDSSNAADTLKWVATFVLLVAAVVGNYLYGELSVVA
RAAGVIVLIAAALGVAATTTKGKEAIVFARESRMEVRKVVWPTRQETMQTTLIVLAVS
IVMALALWGIDGIMVRLVAFATGV"
misc_feature 336844..337119
/gene="secE"
/locus_tag="O3Y_01480"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK05740"
/db_xref="CDD:235587"
gene 337141..337689
/gene="nusG"
/locus_tag="O3Y_01485"
/db_xref="GeneID:11913256"
CDS 337141..337689
/gene="nusG"
/locus_tag="O3Y_01485"
/note="COG0250 Transcription antiterminator"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusG"
/protein_id="YP_005332172.1"
/db_xref="GI:379740203"
/db_xref="GeneID:11913256"
/translation="MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLV
PTEEVVEMRAGQRRKSERKFFPGYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAP
ITDKEADAILNRLEKASEAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKV
SVSIFGRATPVELEFGQVEKLD"
misc_feature 337144..337686
/gene="nusG"
/locus_tag="O3Y_01485"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 337162..337485
/gene="nusG"
/locus_tag="O3Y_01485"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(337171..337173,337273..337275,337333..337335,
337342..337344,337348..337350,337447..337449,
337471..337473)
/gene="nusG"
/locus_tag="O3Y_01485"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 337513..337680
/gene="nusG"
/locus_tag="O3Y_01485"
/note="NusG contains an NGN domain at its N-terminus and
KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
/db_xref="CDD:240515"
misc_feature order(337549..337563,337570..337572,337606..337608,
337633..337641,337645..337656,337666..337671)
/gene="nusG"
/locus_tag="O3Y_01485"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
misc_feature 337549..337560
/gene="nusG"
/locus_tag="O3Y_01485"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
gene 337820..338248
/gene="rplK"
/locus_tag="O3Y_01490"
/db_xref="GeneID:11913257"
CDS 337820..338248
/gene="rplK"
/locus_tag="O3Y_01490"
/note="COG0080 Ribosomal protein L11"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_005332173.1"
/db_xref="GI:379740204"
/db_xref="GeneID:11913257"
/translation="MAKKVEAYVKLQVAAGMANPSPPVGPALGQRGVNIMEFCKAFNA
RTESLEKGLPIPVVITVYSDRSFTFETKTPPASVLLKKAAGIKSGSARPNTAKVGTIT
DAQIQEIAATKAADMTGADIEAMKRSIAGTARSMGLVVEG"
misc_feature 337820..338245
/gene="rplK"
/locus_tag="O3Y_01490"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:234661"
misc_feature 337844..338239
/gene="rplK"
/locus_tag="O3Y_01490"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(337847..337849,337907..337909,338042..338050,
338060..338062,338081..338083,338156..338158,
338171..338179,338189..338191,338198..338203,
338210..338215,338219..338227)
/gene="rplK"
/locus_tag="O3Y_01490"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(337847..337849,337991..337993,337997..338008,
338018..338020,338024..338029,338159..338164,
338171..338176)
/gene="rplK"
/locus_tag="O3Y_01490"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(337895..337897,337907..337909)
/gene="rplK"
/locus_tag="O3Y_01490"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(338099..338101,338108..338110)
/gene="rplK"
/locus_tag="O3Y_01490"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 338253..338954
/gene="rplA"
/locus_tag="O3Y_01495"
/db_xref="GeneID:11913258"
CDS 338253..338954
/gene="rplA"
/locus_tag="O3Y_01495"
/note="COG0081 Ribosomal protein L1"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_005332174.1"
/db_xref="GI:379740205"
/db_xref="GeneID:11913258"
/translation="MAKLTKRMRTIRAKVDVTKEYDINEAVALLKELATAKFVESVDV
AVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQGANAEAAKAAGAELVGMEDLAD
LVKKGEMNFDVVIASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
VRYRNDKNGIIHTTIGKVTFEADQLKENLEALLVALKKAKPSSAKGVFVKKVSISTTM
GAGVAVDQNTLSAQV"
misc_feature 338319..338924
/gene="rplA"
/locus_tag="O3Y_01495"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:238235"
misc_feature order(338358..338366,338373..338375,338379..338381,
338385..338387,338391..338393,338754..338756,
338760..338762,338766..338768,338904..338909,
338913..338915)
/gene="rplA"
/locus_tag="O3Y_01495"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238235"
gene 339224..339712
/gene="rplJ"
/locus_tag="O3Y_01500"
/db_xref="GeneID:11913259"
CDS 339224..339712
/gene="rplJ"
/locus_tag="O3Y_01500"
/note="COG0244 Ribosomal protein L10"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_005332175.1"
/db_xref="GI:379740206"
/db_xref="GeneID:11913259"
/translation="MALNLQDKKAIVAEVNEAASGALSAVVADSRGVQVAAMTNLRKQ
AREAGVYLKVVRNTLARRAVEGTAYECLKDVFVGPTLIGFSNEHPGAAARLFKDFAKE
NKAFEIKAAAFEGVLTDPEVLATLPTYDEAIARLMMCMKEASAGKLVRTIAAVRDQKE
AA"
misc_feature 339233..339697
/gene="rplJ"
/locus_tag="O3Y_01500"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:240223"
misc_feature order(339245..339250,339257..339259,339389..339400,
339407..339409)
/gene="rplJ"
/locus_tag="O3Y_01500"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:240223"
misc_feature order(339491..339493,339560..339562,339608..339610,
339617..339622,339629..339634,339638..339646,
339650..339658,339662..339670,339677..339682,
339686..339691,339695..339697)
/gene="rplJ"
/locus_tag="O3Y_01500"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:240223"
gene 339779..340144
/gene="rplL"
/locus_tag="O3Y_01505"
/db_xref="GeneID:11913260"
CDS 339779..340144
/gene="rplL"
/locus_tag="O3Y_01505"
/note="COG0222 Ribosomal protein L7/L12"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_005332176.1"
/db_xref="GI:379740207"
/db_xref="GeneID:11913260"
/translation="MSITNEQILDAIAEMSVMQVVELISAMEEKFGVSAAAAVVSGPA
AAAAVEEQTEFNVILAAAGANKVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKE
EAEALKKELEEAGATVEVK"
misc_feature 339785..340138
/gene="rplL"
/locus_tag="O3Y_01505"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(339785..339787,339824..339832,339839..339844,
339851..339853,339860..339862,339905..339907,
339914..339919,339923..339925,339935..339940,
340001..340003,340007..340012,340016..340018,
340022..340027,340067..340072,340076..340078,
340085..340087)
/gene="rplL"
/locus_tag="O3Y_01505"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(339794..339796,339803..339805,339815..339817,
339854..339856,339869..339871)
/gene="rplL"
/locus_tag="O3Y_01505"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(339836..339838,339845..339850,339860..339862,
339869..339871)
/gene="rplL"
/locus_tag="O3Y_01505"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(339974..339979,339986..339991,339998..340000,
340019..340024,340031..340033)
/gene="rplL"
/locus_tag="O3Y_01505"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(339977..339979,339989..339991,339998..340000,
340019..340024,340031..340033)
/gene="rplL"
/locus_tag="O3Y_01505"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(339977..339979,339986..339991,339998..340000)
/gene="rplL"
/locus_tag="O3Y_01505"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 340385..344410
/gene="rpoB"
/locus_tag="O3Y_01510"
/db_xref="GeneID:11913261"
CDS 340385..344410
/gene="rpoB"
/locus_tag="O3Y_01510"
/EC_number="2.7.7.6"
/note="COG0085 DNA-directed RNA polymerase, beta
subunit/140 kD subunit"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_005332177.1"
/db_xref="GI:379740208"
/db_xref="GeneID:11913261"
/translation="MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPE
GQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRL
VIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD
KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSA
EILDIFFEKVNFEVKDQTLMMELVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQ
LEKDGVNFIEVPVEYIVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLE
VLFTNDLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSA
ERYDLSTVGRMKFNSSIGREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGS
SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEG
PNIGLINSLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLT
EEGGFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMG
ANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEE
LIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQ
NMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPN
VGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
DTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLL
ARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFE
AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYD
ENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQ
KVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLP
ASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPE
SFNVLLKEIRSLGINIELEDE"
misc_feature 340385..>343207
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="DNA-directed RNA polymerase subunit beta; Reviewed;
Region: rpoB; PRK00405"
/db_xref="CDD:234749"
misc_feature 340463..>341002
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl17585"
/db_xref="CDD:248139"
misc_feature <341372..341746
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:218151"
misc_feature <341654..>342517
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature 342527..>343207
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:215994"
misc_feature <343505..344401
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature order(343547..343549,343553..343555,343628..343636,
343643..343645,343649..343654,344024..344047,
344051..344053)
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(343601..343603,343607..343609,343613..343615,
343679..343681,343685..343687,343694..343696,
343703..343705,343718..343720,343730..343732,
343940..343942,344021..344023,344045..344053,
344057..344059,344096..344098,344105..344113,
344117..344122,344183..344191,344201..344203,
344207..344212,344216..344218,344222..344239,
344243..344260,344270..344272,344339..344341,
344351..344353,344357..344359,344363..344368,
344372..344374,344378..344389,344393..344395,
344399..344401)
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(343625..343627,344027..344029)
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(343628..343630,343667..343669,343748..343750,
343814..343816,343820..343822,344009..344011,
344060..344062)
/gene="rpoB"
/locus_tag="O3Y_01510"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
gene 344515..348720
/locus_tag="O3Y_01515"
/db_xref="GeneID:11913262"
CDS 344515..348720
/locus_tag="O3Y_01515"
/EC_number="2.7.7.6"
/note="COG0086 DNA-directed RNA polymerase, beta'
subunit/160 kD subunit"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_005332178.1"
/db_xref="GI:379740209"
/db_xref="GeneID:11913262"
/translation="MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETI
NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRM
GHIELASPVAHIWFLKSLPSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQML
TEEEYLDRLEEWGDEFTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLT
KRLKLVEAFVASGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
NRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGLAT
TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVL
GLYYMTREKINAKGEGMYLTGPAEAEKAYRTKTAELHARVKVRITETIKHENGKLTTE
TKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQISNLLNEAYRKLGLKDTVIFADQI
MYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEEVREIQEQFQSGLVTAGERYNKV
IDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQL
AGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTR
RLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGTDEV
LIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGEA
VGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKLHNAKFVTNKDGK
LVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITE
VAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDV
LIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFE
ARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIE
RGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRK
CTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQG
PSAEQATDNLAALLNAGFSSDDE"
misc_feature 344554..345540
/locus_tag="O3Y_01515"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:218370"
misc_feature 344572..347073
/locus_tag="O3Y_01515"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:223164"
misc_feature 345217..346047
/locus_tag="O3Y_01515"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:214767"
misc_feature 345979..346446
/locus_tag="O3Y_01515"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:218361"
misc_feature 346531..346806
/locus_tag="O3Y_01515"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:218372"
misc_feature 346810..>347667
/locus_tag="O3Y_01515"
/note="RNA polymerase Rpb1, domain 5; Region:
RNA_pol_Rpb1_5; pfam04998"
/db_xref="CDD:147266"
misc_feature 347233..>347340
/locus_tag="O3Y_01515"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 347251..347253
/locus_tag="O3Y_01515"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature 347908..>347964
/locus_tag="O3Y_01515"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature <348157..348600
/locus_tag="O3Y_01515"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(348442..348444,348487..348492)
/locus_tag="O3Y_01515"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(348532..348534,348550..348552,348568..348570,
348577..348582,348592..348594)
/locus_tag="O3Y_01515"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(348831..349325)
/locus_tag="O3Y_01520"
/db_xref="GeneID:11913263"
CDS complement(348831..349325)
/locus_tag="O3Y_01520"
/note="COG3160 Regulator of sigma D"
/codon_start=1
/transl_table=11
/product="anti-RNA polymerase sigma 70 factor"
/protein_id="YP_005332179.1"
/db_xref="GI:379740210"
/db_xref="GeneID:11913263"
/translation="MVMLRKFKNVQEQWGGSSDIIDHWLDKRQHVIVEYCKLAALQPC
TTKAAVSELPSPQALLYFCQELVDYISEGHFKIYDMVMDKWHATGFKATDEINQVYGK
IVATTEPLLNFNDQYATVTEYDELLDLDRDLSKVGEVLELRFSLEDQLIQLIADSLAV
PPGA"
misc_feature complement(348834..349319)
/locus_tag="O3Y_01520"
/note="Regulator of sigma D [Transcription]; Region: Rsd;
COG3160"
/db_xref="CDD:225702"
gene 349503..350279
/gene="nudC"
/locus_tag="O3Y_01525"
/db_xref="GeneID:11913264"
CDS 349503..350279
/gene="nudC"
/locus_tag="O3Y_01525"
/note="COG2816 NTP pyrophosphohydrolases containing a
Zn-finger, probably nucleic-acid-binding"
/codon_start=1
/transl_table=11
/product="NADH pyrophosphatase"
/protein_id="YP_005332180.1"
/db_xref="GI:379740211"
/db_xref="GeneID:11913264"
/translation="MEKSDGKNAYWCVVSGSDLWLVDGQIPYGSAEQWDLPQEKAILV
DRYQNSPVYWLNAADIEQDRPLTSLRELLGVDEALFLAASKAVQYGHMSQTIRFCPQC
GGRNYLNHQQLAMQCHDCRTLHYPRIFPCIIVAVRKQQQILLAQHPRHRNGMYTVIAG
FVEVGETLEQCVAREVLEETGIVVTNIRYFGSQPWAFPSSMMMAFLADYDTGELKPDY
SELSDANWFGIENLPPVAPRGTIARALIEQTLADIAQDQA"
misc_feature 349521..350261
/gene="nudC"
/locus_tag="O3Y_01525"
/note="NADH pyrophosphatase; Reviewed; Region: nudC;
PRK00241"
/db_xref="CDD:234699"
misc_feature 349524..349778
/gene="nudC"
/locus_tag="O3Y_01525"
/note="NADH pyrophosphatase-like rudimentary NUDIX domain;
Region: NUDIX-like; pfam09296"
/db_xref="CDD:220167"
misc_feature 349791..349877
/gene="nudC"
/locus_tag="O3Y_01525"
/note="NADH pyrophosphatase zinc ribbon domain; Region:
zf-NADH-PPase; pfam09297"
/db_xref="CDD:204192"
misc_feature 349890..350255
/gene="nudC"
/locus_tag="O3Y_01525"
/note="NADH pyrophosphatase, a member of the Nudix
hydrolase superfamily, catalyzes the cleavage of NADH into
reduced nicotinamide mononucleotide (NMNH) and AMP. Like
other members of the Nudix family, it requires a divalent
cation, such as Mg2+ or Mn2+, for...; Region:
NADH_pyrophosphatase; cd03429"
/db_xref="CDD:239521"
misc_feature order(349893..349895,349977..349985,350085..350087,
350094..350096,350100..350102,350106..350108)
/gene="nudC"
/locus_tag="O3Y_01525"
/note="putative NADH binding site [chemical binding];
other site"
/db_xref="CDD:239521"
misc_feature order(349980..349985,349989..349991,350025..350027,
350034..350039,350085..350087,350094..350096,
350100..350102,350106..350108)
/gene="nudC"
/locus_tag="O3Y_01525"
/note="putative active site [active]"
/db_xref="CDD:239521"
misc_feature 349980..350048
/gene="nudC"
/locus_tag="O3Y_01525"
/note="nudix motif; other site"
/db_xref="CDD:239521"
misc_feature order(350025..350027,350034..350039,350160..350162)
/gene="nudC"
/locus_tag="O3Y_01525"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:239521"
gene 350534..351601
/gene="hemE"
/locus_tag="O3Y_01530"
/db_xref="GeneID:11913265"
CDS 350534..351601
/gene="hemE"
/locus_tag="O3Y_01530"
/EC_number="4.1.1.37"
/note="COG0407 Uroporphyrinogen-III decarboxylase"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen decarboxylase"
/protein_id="YP_005332181.1"
/db_xref="GI:379740212"
/db_xref="GeneID:11913265"
/translation="MTELKNDRYLRALLKQPVDYTPVWMMRQAGRYLPEYRATRAQAG
DFMALCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPVFERP
ITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGS
SKAFTKIKKMMYSEPTVLHALLDKLADSVISYLNAQIKAGAQAVMVFDTWGGVLTPRD
YQQFSLQYMHKIVDGLIRENEGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWTINIA
DAKARVGDKVALQGNMDPSILYAPAPRIREEVASILAGFGQGGTGHVFNLGHGIHLDV
PPENAGVFVEAVHELSKPYHP"
misc_feature 350549..351577
/gene="hemE"
/locus_tag="O3Y_01530"
/note="methylcobalamin:coenzyme M methyltransferase;
Validated; Region: PRK06252"
/db_xref="CDD:235753"
misc_feature 350561..351577
/gene="hemE"
/locus_tag="O3Y_01530"
/note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate side
chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction...; Region: URO-D;
cd00717"
/db_xref="CDD:238368"
misc_feature order(350609..350626,350639..350641,350651..350653,
350669..350671,350750..350770,350804..350806,
350819..350821,350963..350965,350993..350995,
351011..351013,351152..351154,351158..351163,
351275..351277,351515..351517)
/gene="hemE"
/locus_tag="O3Y_01530"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238368"
misc_feature order(350612..350614,350624..350626,350762..350764,
350993..350995,351158..351160,351515..351517)
/gene="hemE"
/locus_tag="O3Y_01530"
/note="active site"
/db_xref="CDD:238368"
gene 351700..352335
/locus_tag="O3Y_01535"
/db_xref="GeneID:11913266"
CDS 351700..352335
/locus_tag="O3Y_01535"
/note="COG1309 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_005332182.1"
/db_xref="GI:379740213"
/db_xref="GeneID:11913266"
/translation="MKTKDRIVHAALELFNQQGERNITTNHIAAHIEISPGNLYYHFR
NKQEIVRDIFALYSAELIERFTPLQGQYESLSLLKHYLDSIFTLMWKYRFFYANLPEI
LQRDEELHADYIRVQERLQTNLIDIVRNFVNLQLLELNEDEMPKLVRTLHLIASSWLG
YQSAMSHKTQITEEVIHQGMLQMISVVKPCATKAGREQLQLLEEGVRAMHA"
misc_feature 351703..352200
/locus_tag="O3Y_01535"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:224228"
misc_feature 351718..351858
/locus_tag="O3Y_01535"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature 351862..352299
/locus_tag="O3Y_01535"
/note="Bacterial transcriptional repressor; Region: TetR;
pfam13972"
/db_xref="CDD:206142"
gene 352422..353381
/locus_tag="O3Y_01540"
/db_xref="GeneID:11913267"
CDS 352422..353381
/locus_tag="O3Y_01540"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332183.1"
/db_xref="GI:379740214"
/db_xref="GeneID:11913267"
/translation="MDYDVFNGDADGILSLVQWRLVHPKSTQLVTGVKRDIALLERLT
VTAGDELVVLDISMAKNQLGLQRALQAGAHVFYADHHQPGDIPAHSALQAHIDTDANL
CTALIIDRLLKGRFRDWAITAAFGDNLHRVAHTLAEEAGFDAAQTDALCELGTLINYN
GYGRTVSELHFAPDTLYQTLLAYQTPWAVLADLNSPFYQLRSAYQQDFAFALAQPAYY
RSSSVTVVILPDCAAAQRVSGAFANHLANQDMQRAHLIVTYADEQHYTLSLRAPLSDK
RGAGALCAQFPSGGGRESAGGINQLPYALLDNVIAVVEAFYAS"
gene complement(353378..354526)
/locus_tag="O3Y_01545"
/db_xref="GeneID:11913268"
CDS complement(353378..354526)
/locus_tag="O3Y_01545"
/note="COG4942 Membrane-bound metallopeptidase"
/codon_start=1
/transl_table=11
/product="NlpD-likeprotein"
/protein_id="YP_005332184.1"
/db_xref="GI:379740215"
/db_xref="GeneID:11913268"
/translation="MTATDPHAIFSDFLGKTLTRRLLVCLLFMVSPSLFAATQQELTG
VKSEISRQQQSLAEQQKSLDQLQQALKQQELGINSIENQITKTKNDLENANRNIAQLN
SNIQALETQKQQQADKLERLLQTYYLTKRSLTNGQFFHRSADEDRISQYYQHLAKSRA
QAIEALEKTQADLNASQQQRQAEREQIEKLLAEQTQQRDKLAKTQSERKQTVKKIESS
ISGDKVYLAELQRNETRLKAEIAKAAKRNAVLMNGIASQRGKLPWPLKGRVLHNFGER
QTGQIDWKGLVIDANYGQEVKAVYPGTIVFAEYLRGYGLVVLLDHGKGDMTLYGFNQT
LLKKEGDKVIAGETIALAGDTGGQSRPALYFEIRRNSRAENPSQWLQR"
misc_feature complement(353381..354526)
/locus_tag="O3Y_01545"
/note="Membrane-bound metallopeptidase [Cell division and
chromosome partitioning]; Region: COG4942"
/db_xref="CDD:227278"
misc_feature complement(353399..353680)
/locus_tag="O3Y_01545"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:216566"
gene complement(354695..356227)
/locus_tag="O3Y_01550"
/db_xref="GeneID:11913269"
CDS complement(354695..356227)
/locus_tag="O3Y_01550"
/EC_number="5.4.2.1"
/note="COG0696 Phosphoglyceromutase"
/codon_start=1
/transl_table=11
/product="phosphoglyceromutase"
/protein_id="YP_005332185.1"
/db_xref="GI:379740216"
/db_xref="GeneID:11913269"
/translation="MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT
LISASGMDVGLPDGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAI
DKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRS
AEASLKRFQDLFAKLGKGRIASIVGRYYAMDRDNNWDRVEKAYDLLTLAQGEFTYDSA
VEALQAAYAREENDEFVKATEIRAAGQESAAMQDGDALLFMNYRADRARQITRTFVPD
FAGFSRKAFPALDFVMLTQYAADIPLQCAFGPASLENTYGEWLSKAGKTQLRISETEK
YAHVTFFFNGGVENEFPGEERQLVASPKVATYDLQPEMSSKELTDKLVAAIKSGKYDA
IICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMI
DPETGGVHTAHTSLPVPLIYVGNKAISLKEGGKLSDLAPTMLALSDLDIPADMSGQVL
YS"
misc_feature complement(354704..356227)
/locus_tag="O3Y_01550"
/note="phosphoglyceromutase; Provisional; Region:
PRK05434"
/db_xref="CDD:235463"
misc_feature complement(354701..356224)
/locus_tag="O3Y_01550"
/note="Phosphoglyceromutase [Carbohydrate transport and
metabolism]; Region: GpmI; COG0696"
/db_xref="CDD:223768"
gene complement(356370..357257)
/locus_tag="O3Y_01555"
/db_xref="GeneID:11913270"
CDS complement(356370..357257)
/locus_tag="O3Y_01555"
/note="COG0697 Permeases of the drug/metabolite
transporter (DMT) superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332186.1"
/db_xref="GI:379740217"
/db_xref="GeneID:11913270"
/translation="MGYEWLALAAACLWAIASLLSITPAKHLGSFAYSRWRMGCTSVI
LTTIALFSGGWSTVHSSAIPAMMLSGFIGIFIGDTALFACLNRMGPRQSGLLFSCHAV
FSAVLGYFLFSESMTKQELFGSTLVFSGVLMAIFFGRRGQTGPSLDSINGSVWVGIGL
GLTAALCQALGGIIAKPVMQTEIDPIAASAMRMITAFAAHSLLRLTGARIARPTQIIT
LNIFLVTALNGFIAMAVGMTLILYALREGNVGMVALLSSTTPIMLLPLLWIYTKQCPN
RYAWLGAILAVGGTSLLVS"
misc_feature complement(356850..357182)
/locus_tag="O3Y_01555"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
misc_feature complement(356379..357152)
/locus_tag="O3Y_01555"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
misc_feature complement(356376..356762)
/locus_tag="O3Y_01555"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
gene complement(357409..358824)
/locus_tag="O3Y_01560"
/db_xref="GeneID:11913271"
CDS complement(357409..358824)
/locus_tag="O3Y_01560"
/note="COG0471 Di- and tricarboxylate transporters"
/codon_start=1
/transl_table=11
/product="transporter"
/protein_id="YP_005332187.1"
/db_xref="GI:379740218"
/db_xref="GeneID:11913271"
/translation="MPQLERGLLVKLLICFLLPLGVLLMPIDAIPIQDLTLVQHRLLA
IFLLAALLWVLEPVPVFATSILIIALELVMISDKGLHGFRVPDPHHPLGELLKYTDIF
SAFSSPIIILFMGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLGLMLITSVFSM
FMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIGTPPNAIAL
QYLTGENSIDFLSWMMMGLPFVLVQLTIAWFLLQKLFPSSQATMTLKLKGEFQRGWRA
MLVYITFALTIVLWMTTSWHGMNTYVVAIIPLAVFTLTGIMGKEELKQINWDVLWLVA
GGIAIGIGLEQTGLAQALAHSIDYQSLSPMLIVIALSLVCWLMANFMSNTATANLIMP
IAAAIGTSMSSLEQVGGLQALLVVVAFSASLGMILPVSTPPNSLAYSTGLIESKDMAK
TGLVIGGIGLGIVYLMVFLLG"
misc_feature complement(357472..358803)
/locus_tag="O3Y_01560"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:223547"
misc_feature complement(357475..358542)
/locus_tag="O3Y_01560"
/note="Permease SLC13 (solute carrier 13). The
sodium/dicarboxylate cotransporter NaDC-1 has been shown
to translocate Krebs cycle intermediates such as
succinate, citrate, and alpha-ketoglutarate across plasma
membranes rabbit, human, and rat kidney. It is...; Region:
SLC13_permease; cd01115"
/db_xref="CDD:238535"
misc_feature complement(order(357556..357606,357622..357630,
357682..357729,357796..357852,357895..357915,
357916..357930,357952..357990,358084..358128,
358186..358257,358267..358281,358291..358329,
358333..358383,358453..358506))
/locus_tag="O3Y_01560"
/note="transmembrane helices; other site"
/db_xref="CDD:238535"
gene complement(359032..359889)
/gene="psd"
/locus_tag="O3Y_01565"
/db_xref="GeneID:11913272"
CDS complement(359032..359889)
/gene="psd"
/locus_tag="O3Y_01565"
/EC_number="4.1.1.65"
/note="COG0688 Phosphatidylserine decarboxylase"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="YP_005332188.1"
/db_xref="GI:379740219"
/db_xref="GeneID:11913272"
/translation="MDKIKVGLQYWIPQHALTRLVGKLASARAGSLTTAIIRWFIKQY
NVNMDEALHSDPTHFKTFNEFFVRELKAGVRPIAEGEKVITHPADACVSQFGAIEYGK
LIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIELVWAGTVTP
PRGNTVYRWDYPANGNQAVVLKKGEEMGRFKLGSTVINLFAKQAIRFDDSMALGAPTR
MGEPYAHQA"
misc_feature complement(359035..359889)
/gene="psd"
/locus_tag="O3Y_01565"
/note="phosphatidylserine decarboxylase; Reviewed; Region:
psd; PRK00044"
/db_xref="CDD:234591"
gene complement(359985..361046)
/locus_tag="O3Y_01570"
/db_xref="GeneID:11913273"
CDS complement(359985..361046)
/locus_tag="O3Y_01570"
/note="COG1162 Predicted GTPases"
/codon_start=1
/transl_table=11
/product="GTPase RsgA"
/protein_id="YP_005332189.1"
/db_xref="GI:379740220"
/db_xref="GeneID:11913273"
/translation="MTKKKKLTHGQVRRVRNNQHKKLKQEESIVWDEALLGSAQPGLV
ITRFGQHADIEDPVTGEIHRCNLRRGIESLVSGDNVLWRPGAETLAGISGVVEAVEAR
SSVLVRPDYYDGLKPVAANVDQMVIVSSVLPELSLNIIDRYLIASETLGIAPLIVLNK
IDLLSPELREQYSTWLNDYRAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVG
KSSLVNALLPELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLW
HLETDDVTKAYVEFRPYLGGCKFRDCKHGDDPGCLLREAVSKGEISALRFDNYHRIVQ
SMTENKANRQYSRSKKADL"
misc_feature complement(359997..361040)
/locus_tag="O3Y_01570"
/note="GTPase RsgA; Reviewed; Region: PRK12288"
/db_xref="CDD:237039"
misc_feature complement(360723..360929)
/locus_tag="O3Y_01570"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
misc_feature complement(order(360855..360857,360888..360890,
360912..360914))
/locus_tag="O3Y_01570"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:238094"
misc_feature complement(360045..360689)
/locus_tag="O3Y_01570"
/note="Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases; Region:
YjeQ_EngC; cd01854"
/db_xref="CDD:206747"
misc_feature complement(order(360051..360053,360063..360065,
360072..360074,360183..360185,360189..360191,
360201..360203,360495..360497,360600..360605,
360612..360617,360621..360626,360633..360638))
/locus_tag="O3Y_01570"
/note="GTPase/Zn-binding domain interface [polypeptide
binding]; other site"
/db_xref="CDD:206747"
misc_feature complement(order(360384..360401,360474..360479,
360558..360563,360567..360572))
/locus_tag="O3Y_01570"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206747"
misc_feature complement(360561..360572)
/locus_tag="O3Y_01570"
/note="G4 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360471..360479)
/locus_tag="O3Y_01570"
/note="G5 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360387..360410)
/locus_tag="O3Y_01570"
/note="G1 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360285..360308)
/locus_tag="O3Y_01570"
/note="Switch I region; other site"
/db_xref="CDD:206747"
misc_feature complement(360297..360299)
/locus_tag="O3Y_01570"
/note="G2 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360240..360251)
/locus_tag="O3Y_01570"
/note="G3 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360237..360245)
/locus_tag="O3Y_01570"
/note="Switch II region; other site"
/db_xref="CDD:206747"
gene 361169..361714
/locus_tag="O3Y_01575"
/db_xref="GeneID:11913274"
CDS 361169..361714
/locus_tag="O3Y_01575"
/EC_number="3.1.-.-"
/note="COG1949 Oligoribonuclease (3'->5' exoribonuclease)"
/codon_start=1
/transl_table=11
/product="oligoribonuclease"
/protein_id="YP_005332190.1"
/db_xref="GI:379740221"
/db_xref="GeneID:11913274"
/translation="MSFSDQNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGP
VIAIHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKS
PICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRWQPEVLKEFSKTGSHLA
LDDIRESIAELQFYRKAVFKI"
misc_feature 361190..361705
/locus_tag="O3Y_01575"
/note="DEDDh 3'-5' exonuclease domain of oligoribonuclease
and similar proteins; Region: Orn; cd06135"
/db_xref="CDD:99838"
misc_feature order(361202..361213,361217..361219,361487..361492,
361496..361504,361640..361642,361655..361657)
/locus_tag="O3Y_01575"
/note="putative active site [active]"
/db_xref="CDD:99838"
misc_feature order(361202..361213,361217..361219,361487..361492,
361496..361501,361640..361642,361655..361657)
/locus_tag="O3Y_01575"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:99838"
misc_feature order(361202..361204,361208..361210,361502..361504,
361640..361642,361655..361657)
/locus_tag="O3Y_01575"
/note="catalytic site [active]"
/db_xref="CDD:99838"
misc_feature order(361271..361273,361496..361501,361508..361510,
361517..361519,361556..361561,361565..361567,
361574..361576,361583..361585,361598..361603,
361694..361696,361700..361705)
/locus_tag="O3Y_01575"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99838"
gene 361873..361948
/locus_tag="O3Y_t13311"
/db_xref="GeneID:11913275"
tRNA 361873..361948
/locus_tag="O3Y_t13311"
/product="tRNA-Gly"
/db_xref="GeneID:11913275"
gene 361983..362058
/locus_tag="O3Y_t13313"
/db_xref="GeneID:11913276"
tRNA 361983..362058
/locus_tag="O3Y_t13313"
/product="tRNA-Gly"
/db_xref="GeneID:11913276"
gene 362215..362290
/locus_tag="O3Y_t13315"
/db_xref="GeneID:11913277"
tRNA 362215..362290
/locus_tag="O3Y_t13315"
/product="tRNA-Gly"
/db_xref="GeneID:11913277"
gene 362330..362406
/locus_tag="O3Y_t13317"
/db_xref="GeneID:11913278"
tRNA 362330..362406
/locus_tag="O3Y_t13317"
/product="tRNA-Met"
/db_xref="GeneID:11913278"
gene 362441..362516
/locus_tag="O3Y_t13319"
/db_xref="GeneID:11913279"
tRNA 362441..362516
/locus_tag="O3Y_t13319"
/product="tRNA-Gly"
/db_xref="GeneID:11913279"
gene 362703..362779
/locus_tag="O3Y_t13321"
/db_xref="GeneID:11913280"
tRNA 362703..362779
/locus_tag="O3Y_t13321"
/product="tRNA-Met"
/db_xref="GeneID:11913280"
gene 362822..362898
/locus_tag="O3Y_t13323"
/db_xref="GeneID:11913281"
tRNA 362822..362898
/locus_tag="O3Y_t13323"
/product="tRNA-Met"
/db_xref="GeneID:11913281"
gene 362941..363017
/locus_tag="O3Y_t13325"
/db_xref="GeneID:11913282"
tRNA 362941..363017
/locus_tag="O3Y_t13325"
/product="tRNA-Met"
/db_xref="GeneID:11913282"
gene complement(363587..364696)
/locus_tag="O3Y_01580"
/db_xref="GeneID:11913283"
CDS complement(363587..364696)
/locus_tag="O3Y_01580"
/note="COG1600 Uncharacterized Fe-S protein"
/codon_start=1
/transl_table=11
/product="iron-sulfur cluster-binding protein"
/protein_id="YP_005332191.1"
/db_xref="GI:379740222"
/db_xref="GeneID:11913283"
/translation="MDYQQLANQIKQWAIELGFEKVGICDVDLSEHEPALQAWLDAGY
HCEMDWMARHGMMRARPAELLPGTLRVISARINYLPPQAQFASNLSDPNQAYISRYAL
GRDYHKLVRNQLKKLGEKIEQEVGKLGYRPFVDSAPILERPLAQKAGLGWTGKHSLIL
DKENGSWFFLGELLVDIPLPVDEPSENQCGKCTACITSCPTNAIVAEGVVDARRCVSY
LTIEYSGVIPLEFRRAMGNRIYGCDDCQLVCPWNRFAPLTQQSDFHRRQSLNNADLVV
LFEWDEATFLKNMEGSAIRRIGHQQWRRNLIIAMGNAPYSPRIIDTLQRHLGQSELLD
EHIHWALEEQTQKTATPRQHARLIRIIEKGLPRDA"
misc_feature complement(363665..364669)
/locus_tag="O3Y_01580"
/note="epoxyqueuosine reductase; Region: TIGR00276"
/db_xref="CDD:213520"
misc_feature complement(364289..364525)
/locus_tag="O3Y_01580"
/note="Domain of unknown function (DUF1730); Region:
DUF1730; pfam08331"
/db_xref="CDD:149403"
gene 364901..365365
/locus_tag="O3Y_01585"
/db_xref="GeneID:11913284"
CDS 364901..365365
/locus_tag="O3Y_01585"
/note="COG0802 Predicted ATPase or kinase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332192.1"
/db_xref="GI:379740223"
/db_xref="GeneID:11913284"
/translation="MNSKIFSLKDEQATIELGRALALICSQQTTLYLHGDLGAGKTTF
SRGFIRALGHQGNVKSPTYTLVEPYQLGMWQVYHFDLYRLADPEELEFMGIRDYFSAD
AICLVEWPEKGHGLLPNADLDIDLRYDGDQRVATLTANNHYGCDLLSQLELC"
misc_feature 364901..365353
/locus_tag="O3Y_01585"
/note="Uncharacterized P-loop hydrolase UPF0079; Region:
UPF0079; cl00520"
/db_xref="CDD:241921"
gene 365359..367077
/locus_tag="O3Y_01590"
/db_xref="GeneID:11913285"
CDS 365359..367077
/locus_tag="O3Y_01590"
/note="COG0860 N-acetylmuramoyl-L-alanine amidase"
/codon_start=1
/transl_table=11
/product="N-acetylmuramoyl-L-alanine amidase"
/protein_id="YP_005332193.1"
/db_xref="GI:379740224"
/db_xref="GeneID:11913285"
/translation="MLNVSRFVFLLFGFVLLAIAPQTWANVLEGVRVWPSPDETRVVL
DVKSEVDYSYFTLSSPERLVVDLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRL
VFELKQKTTPTLFKLAPTPGGQYGHRLVIDMPHGKVSESSSASTPSSPAQVSKDASQL
LGNDDIVVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRG
DYFVNLNKRTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENH
EQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHK
TEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFED
NPPEGTLFANRGKAQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTI
PASSAPNPVPVPVMANPVETETITHVVKTGDFLGKLATTYKVSVASIKKENNLKSDTL
VLGQKLKITVSLKDKPLRKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQ
LIIPNK"
misc_feature 365449..365754
/locus_tag="O3Y_01590"
/note="AMIN domain; Region: AMIN; pfam11741"
/db_xref="CDD:221199"
misc_feature 365656..366537
/locus_tag="O3Y_01590"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:223929"
misc_feature 365857..366519
/locus_tag="O3Y_01590"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature order(365878..365880,365923..365925,366085..366087,
366424..366426)
/locus_tag="O3Y_01590"
/note="active site"
/db_xref="CDD:119407"
misc_feature order(365878..365880,365923..365925,366085..366087)
/locus_tag="O3Y_01590"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
misc_feature 366577..366708
/locus_tag="O3Y_01590"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 366616..366930
/locus_tag="O3Y_01590"
/note="FOG: LysM repeat [Cell envelope biogenesis, outer
membrane]; Region: LytE; COG1388"
/db_xref="CDD:224306"
misc_feature 366775..366906
/locus_tag="O3Y_01590"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 366940..367065
/locus_tag="O3Y_01590"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
gene 367084..369045
/gene="mutL"
/locus_tag="O3Y_01595"
/db_xref="GeneID:11913286"
CDS 367084..369045
/gene="mutL"
/locus_tag="O3Y_01595"
/note="COG0323 DNA mismatch repair enzyme (predicted
ATPase)"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein"
/protein_id="YP_005332194.1"
/db_xref="GI:379740225"
/db_xref="GeneID:11913286"
/translation="MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
DLEKGGAKLIRIRDNGSGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASI
SSVSRLTLTSRTVAQEEAWSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKF
LRTEKTEFTHIDELLKRIALSRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGN
PFVQHMLRIELEHQGLKLHGWITTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYE
TSLRVDQFATYVLFIELDPHQVDVNVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQ
VMAPTINEGAFHLPHCAEEVNPPVVPMIDTTQQERVWQAVQNTPDYPRKAPRDNDRDE
SDNPQVRERAVSNPWVASPKTASTGKERYGSASVSKKEAAVYQTLMQTPDLSDEEPST
ASTIVSSIEAVKANIAIEKLGKAIQVVAGQYLLMSSPQGCVLISLYQAQQLKLRGLLN
AQHGALKAQPLLVPLALKLNESEWQVAQRHSSALLQLGIELKSRTNHSIMVMAVPQPL
RQQNLQQLLPDLLSYAASCSESQALSHQALADWLTQRIVVEKRDYTLAEAIGLIAELE
QLWQGNLPLQDPHFITLVDFSASITALHS"
misc_feature 367084..369018
/gene="mutL"
/locus_tag="O3Y_01595"
/note="DNA mismatch repair protein; Reviewed; Region:
mutL; PRK00095"
/db_xref="CDD:234630"
misc_feature 367150..>367389
/gene="mutL"
/locus_tag="O3Y_01595"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(367168..367170,367180..367182,367189..367191,
367249..367251,367255..367257,367261..367263,
367267..367272,367369..367380)
/gene="mutL"
/locus_tag="O3Y_01595"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 367180..367182
/gene="mutL"
/locus_tag="O3Y_01595"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(367261..367263,367267..367269,367369..367371,
367375..367377)
/gene="mutL"
/locus_tag="O3Y_01595"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 367705..368070
/gene="mutL"
/locus_tag="O3Y_01595"
/note="MutL_Trans_MutL: transducer domain, having a
ribosomal S5 domain 2-like fold, found in proteins similar
to Escherichia coli MutL. EcMutL belongs to the DNA
mismatch repair (MutL/MLH1/PMS2) family. This transducer
domain is homologous to the second...; Region:
MutL_Trans_MutL; cd03482"
/db_xref="CDD:239564"
misc_feature 367999..368001
/gene="mutL"
/locus_tag="O3Y_01595"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:239564"
misc_feature 368491..368916
/gene="mutL"
/locus_tag="O3Y_01595"
/note="MutL C terminal dimerisation domain; Region:
MutL_C; pfam08676"
/db_xref="CDD:219965"
gene 369042..369989
/gene="miaA"
/locus_tag="O3Y_01600"
/db_xref="GeneID:11913287"
CDS 369042..369989
/gene="miaA"
/locus_tag="O3Y_01600"
/EC_number="2.5.1.75"
/note="COG0324 tRNA delta(2)-isopentenylpyrophosphate
transferase"
/codon_start=1
/transl_table=11
/product="tRNA delta(2)-isopentenylpyrophosphate
transferase"
/protein_id="YP_005332195.1"
/db_xref="GI:379740226"
/db_xref="GeneID:11913287"
/translation="MTQKLPLALFLMGPTASGKTDLAIRLRQKYPVEIISVDSALIYR
GMDIGTAKPDAQELALAPHRLIDILDPSEAYSAADFRRDALKEMADIVAQGKIPLLVG
GTMLYFKALLEGLSPLPAADPVIRQQIELEAEKLGWQALHDQLQQIDPVSAQRIHPND
PQRLSRALEVYRISGKTLTELTQTKGEAIPYRVLQFAIAPKERAELHRRIELRFEKMV
ESGFEEEVKALYARDDLHPDLPSIRCVGYRQMWDYLDGHGTLDEAIYRGICATRQLAK
RQITWLRSWDDLTWLDSENVDQAVETLSNAIASNEISCV"
misc_feature 369051..369971
/gene="miaA"
/locus_tag="O3Y_01600"
/note="tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis]; Region:
MiaA; COG0324"
/db_xref="CDD:223401"
misc_feature 369051..369968
/gene="miaA"
/locus_tag="O3Y_01600"
/note="tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed; Region: miaA; PRK00091"
/db_xref="CDD:234626"
gene 370161..370424
/gene="hfq"
/locus_tag="O3Y_01605"
/db_xref="GeneID:11913288"
CDS 370161..370424
/gene="hfq"
/locus_tag="O3Y_01605"
/note="COG1923 Uncharacterized host factor I protein"
/codon_start=1
/transl_table=11
/product="RNA-binding protein Hfq"
/protein_id="YP_005332196.1"
/db_xref="GI:379740227"
/db_xref="GeneID:11913288"
/translation="MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
LLKNTVNQMVYKHAISTVVPARPVSHHSGDRPASDRPAEKSEE"
misc_feature 370176..370352
/gene="hfq"
/locus_tag="O3Y_01605"
/note="bacterial Hfq-like; Region: Hfq; cd01716"
/db_xref="CDD:212463"
misc_feature order(370176..370184,370191..370193,370236..370250,
370272..370280,370284..370289,370308..370352)
/gene="hfq"
/locus_tag="O3Y_01605"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:212463"
misc_feature order(370224..370244,370248..370301)
/gene="hfq"
/locus_tag="O3Y_01605"
/note="Sm1 motif; other site"
/db_xref="CDD:212463"
misc_feature order(370233..370235,370245..370259,370296..370298,
370314..370316,370338..370343,370347..370349)
/gene="hfq"
/locus_tag="O3Y_01605"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:212463"
misc_feature 370311..370346
/gene="hfq"
/locus_tag="O3Y_01605"
/note="Sm2 motif; other site"
/db_xref="CDD:212463"
gene 370457..371746
/locus_tag="O3Y_01610"
/db_xref="GeneID:11913289"
CDS 370457..371746
/locus_tag="O3Y_01610"
/note="COG2262 GTPases"
/codon_start=1
/transl_table=11
/product="GTPase HflX"
/protein_id="YP_005332197.1"
/db_xref="GI:379740228"
/db_xref="GeneID:11913289"
/translation="MFDRYEAGERAVLVHVNFTQRGEWEDLSECKMLISSAGVTTLHV
VTGSRQTPHPKYFVGEGKAQEIAEAVQMHVANVVIFNHALSPAQERNLERLCQCRVID
RTGLILDIFAQRARTHEGKLQVELAQLRHISTRLIRGWTHLERQKGGIGLRGPGETQL
ETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFNRIT
EAGVYAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQETQE
ADILLHVVDASDERFRENIQAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDE
GVPRVVWISAMQGAGTELLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQ
EEYDPEGNLLITVRMQQVDWARLEKREQADLCDFIVT"
misc_feature 370457..371740
/locus_tag="O3Y_01610"
/note="GTPase HflX; Provisional; Region: PRK11058"
/db_xref="CDD:182934"
misc_feature 370529..370792
/locus_tag="O3Y_01610"
/note="GTP-binding GTPase N-terminal; Region: GTP-bdg_N;
pfam13167"
/db_xref="CDD:205348"
misc_feature 370925..371539
/locus_tag="O3Y_01610"
/note="HflX GTPase family; Region: HflX; cd01878"
/db_xref="CDD:206666"
misc_feature 371066..371089
/locus_tag="O3Y_01610"
/note="G1 box; other site"
/db_xref="CDD:206666"
misc_feature order(371075..371077,371081..371092,371405..371410,
371414..371416,371483..371491)
/locus_tag="O3Y_01610"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206666"
misc_feature 371129..371170
/locus_tag="O3Y_01610"
/note="Switch I region; other site"
/db_xref="CDD:206666"
misc_feature 371159..371161
/locus_tag="O3Y_01610"
/note="G2 box; other site"
/db_xref="CDD:206666"
misc_feature 371207..371218
/locus_tag="O3Y_01610"
/note="G3 box; other site"
/db_xref="CDD:206666"
misc_feature 371216..371287
/locus_tag="O3Y_01610"
/note="Switch II region; other site"
/db_xref="CDD:206666"
misc_feature 371405..371416
/locus_tag="O3Y_01610"
/note="G4 box; other site"
/db_xref="CDD:206666"
misc_feature 371483..371491
/locus_tag="O3Y_01610"
/note="G5 box; other site"
/db_xref="CDD:206666"
gene 371792..372979
/locus_tag="O3Y_01615"
/db_xref="GeneID:11913290"
CDS 371792..372979
/locus_tag="O3Y_01615"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="HflK protein"
/protein_id="YP_005332198.1"
/db_xref="GI:379740229"
/db_xref="GeneID:11913290"
/translation="MAWNEPGNNNGNNGRDNDPWGNNNRGNKGGRDQGPPDLDEVFNK
LSQKLGGKFGGKGGKGPSFSGGGAIGFGVIAAIAVAVWFFTGFYTIGEAERGVVLRLG
KYDRIVDPGLNWRPRFIDEVTPVNVQAIRSLRASGLMLTKDENVVTVSMDVQYRIADP
YKYLYRVTNADDSLRQATDSALRAVVGDSLMDSILTSGRQQIRQSTQQTLNQVIDSYD
MGLMIVDVNFQSARPPEQVKDAFDDAIAAREDEERFIREAEAYKNEILPKATGRAERL
KKEAQGYNERTINEALGQVAQFEKLLPEYQAAPKVTRDRLYLDAMEQVYSNTSKVLID
SESSGNLLYLPIDKLAGQDNKTAQPRPNKSSSAYDQIELESQTTETNTDTQSRSTTRQ
GRY"
misc_feature <371885..371938
/locus_tag="O3Y_01615"
/note="Bacterial membrane protein N terminal; Region:
HflK_N; pfam12221"
/db_xref="CDD:221467"
misc_feature 372035..372766
/locus_tag="O3Y_01615"
/note="Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflK; cd03404"
/db_xref="CDD:239498"
misc_feature 372050..372832
/locus_tag="O3Y_01615"
/note="HflK protein; Region: hflK; TIGR01933"
/db_xref="CDD:130988"
gene 372982..373962
/locus_tag="O3Y_01620"
/db_xref="GeneID:11913291"
CDS 372982..373962
/locus_tag="O3Y_01620"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="HflC protein"
/protein_id="YP_005332199.1"
/db_xref="GI:379740230"
/db_xref="GeneID:11913291"
/translation="MRKLLIPSIVLIIAALLMSMFVIPEGERGIVIRFGRVLKDNNDL
ARIYEPGLHFKMPLFDRVKTLDARIQTMDGRSDRFVTSEKKDVIIDTYVKWRIEDFGQ
YYLATGGGNALTAEALLERKVTDVLRSEIGAREIKQIVSGPRNVAVLPENADSSELTT
EAAKEAMEIDGQRDQIMSEVLNDTRESAMKDLGVYVVDFRMKKINLPDEISESIYRRM
RAERESVARKHRSQGREKAEVIRAQAELEVATILAEADKTARVTRGTADAEAAKIYSD
AYKKDPEFFSFLRSLRAYEKSFNSKNDILVLDPNSEFFQYMNNAKGAAAK"
misc_feature 372982..373935
/locus_tag="O3Y_01620"
/note="HflC protein; Region: hflC; TIGR01932"
/db_xref="CDD:233644"
misc_feature 373039..373875
/locus_tag="O3Y_01620"
/note="Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflC; cd03405"
/db_xref="CDD:239499"
gene 374023..374211
/locus_tag="O3Y_01625"
/db_xref="GeneID:11913292"
CDS 374023..374211
/locus_tag="O3Y_01625"
/note="COG3242 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332200.1"
/db_xref="GI:379740231"
/db_xref="GeneID:11913292"
/translation="MSQTLWVALGLVLIVEGLGPLFAPRGWRQMVAQLSLQPDNQLRR
IGGCLVVAGAVIAYVFAR"
misc_feature 374023..374208
/locus_tag="O3Y_01625"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3242"
/db_xref="CDD:225782"
gene complement(374252..374479)
/locus_tag="O3Y_01630"
/db_xref="GeneID:11913293"
CDS complement(374252..374479)
/locus_tag="O3Y_01630"
/note="COG2900 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332201.1"
/db_xref="GI:379740232"
/db_xref="GeneID:11913293"
/translation="MQEMSLTQLQERIEDLECKLAFQEQTIETLNDALTQQQLLLSKM
QDQMKYVVGKVKNMDTSTLADPAHETPPPHY"
misc_feature complement(374255..374479)
/locus_tag="O3Y_01630"
/note="hypothetical protein; Provisional; Region:
PRK04406"
/db_xref="CDD:235296"
gene complement(374482..375465)
/locus_tag="O3Y_01635"
/db_xref="GeneID:11913294"
CDS complement(374482..375465)
/locus_tag="O3Y_01635"
/note="COG2319 FOG: WD40 repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332202.1"
/db_xref="GI:379740233"
/db_xref="GeneID:11913294"
/translation="MMRRIYHSLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLS
RDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQANPVSVIRIADSERFAVTASQNN
FAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLA
HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLA
FTSDGGNQALIWDLTADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNT
QDGKKIASFESENKKDHGPTQAVVYDAAFDAQQRAVAGSSAGIAQAWRMEN"
misc_feature complement(374494..375219)
/locus_tag="O3Y_01635"
/note="WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions including
adaptor/regulatory modules in signal transduction,
pre-mRNA processing and cytoskeleton assembly; typically
contains a GH dipeptide 11-24 residues from...; Region:
WD40; cl02567"
/db_xref="CDD:207648"
misc_feature complement(374596..>375198)
/locus_tag="O3Y_01635"
/note="FOG: WD40 repeat [General function prediction
only]; Region: COG2319"
/db_xref="CDD:32473"
misc_feature complement(order(374494..374499,374515..374517,
374527..374529,374602..374607,374641..374646,
374662..374664,374677..374679,374734..374739,
374773..374778,374794..374796,374806..374808,
374860..374862,374896..374901,374917..374919,
374932..374934,374983..374985,375019..375024,
375040..375042,375055..375057,375145..375150,
375166..375168,375178..375180))
/locus_tag="O3Y_01635"
/note="structural tetrad; other site"
/db_xref="CDD:29257"
gene 375602..376381
/locus_tag="O3Y_01640"
/db_xref="GeneID:11913295"
CDS 375602..376381
/locus_tag="O3Y_01640"
/note="COG0545 FKBP-type peptidyl-prolyl cis-trans
isomerases 1"
/codon_start=1
/transl_table=11
/product="FKBP-type peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_005332203.1"
/db_xref="GI:379740234"
/db_xref="GeneID:11913295"
/translation="MKSLFKVSLLAATVMLAVGCQKEEAPKTETTPAAQTAAAKTVEF
KSEDDKAAYAIGVSFANYLKTSIEKPSEIGIDLNKDLVLKGIEHVFAGNPEMSEEETR
AALEALDKRVAETMQAKAAEKAAENKKKGDEFRAQFEKESGVVKTQSGLLYQVMTPAE
GDKPKDTDTVQVHYKGTLIDGSQFDSSYERGEPATFPLNRVIPGWTEGVQLMSVGSKF
KLVIPPELAYGEQDTPTIPANSTLVFEVELLKIENGKDAAQ"
misc_feature 375602..376372
/locus_tag="O3Y_01640"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional; Region: PRK10902"
/db_xref="CDD:236791"
misc_feature 375725..376066
/locus_tag="O3Y_01640"
/note="Domain amino terminal to FKBP-type peptidyl-prolyl
isomerase; Region: FKBP_N; pfam01346"
/db_xref="CDD:216447"
misc_feature 376085..376348
/locus_tag="O3Y_01640"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; pfam00254"
/db_xref="CDD:215821"
gene 376580..377302
/locus_tag="O3Y_01645"
/db_xref="GeneID:11913296"
CDS 376580..377302
/locus_tag="O3Y_01645"
/note="COG2964 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332204.1"
/db_xref="GI:379740235"
/db_xref="GeneID:11913296"
/translation="MTMTETMNVDLLLEMESVHVKPFTEHDKVILRSYEAVVDGIASL
IGPFCEIVLHSLEDLNTSAIKIANGENTGRQVGSPITDMALKMLRDIEGSERNFSRSY
FTRAKGGVLMKSITVAIRNGENRVIGLLCINVNLDAPFSQVLKSFMPTQEAQEAASSV
NFASDVEELVDQTVERTIEEINGDKSVSNNTKNRQIVMALFDKGIFDIKDAINRVADR
LNISKHTVYLYIRQRKTEDDEK"
misc_feature 376640..377293
/locus_tag="O3Y_01645"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2964"
/db_xref="CDD:32784"
misc_feature 376667..377017
/locus_tag="O3Y_01645"
/note="YheO-like PAS domain; Region: PAS_6; pfam08348"
/db_xref="CDD:116929"
misc_feature 377081..377272
/locus_tag="O3Y_01645"
/note="HTH domain; Region: HTH_22; pfam13309"
/db_xref="CDD:205489"
gene 377299..377694
/locus_tag="O3Y_01650"
/db_xref="GeneID:11913297"
CDS 377299..377694
/locus_tag="O3Y_01650"
/note="COG1553 Uncharacterized conserved protein involved
in intracellular sulfur reduction"
/codon_start=1
/transl_table=11
/product="sulfur transfer complex subunit TusD"
/protein_id="YP_005332205.1"
/db_xref="GI:379740236"
/db_xref="GeneID:11913297"
/translation="MKPLTYTLVVNGPQYGTQSARNAYLFAKALIEKGHILKSVFFYQ
DGVLNGSSTHVPANDEFNLLQGWQSLAQSHQVQLETCVAAALRRGVVSEQEASQHGLA
SHNLAAHFTQAGLGSLAQALLEQDRVVQF"
misc_feature 377308..377691
/locus_tag="O3Y_01650"
/note="sulfur transfer complex subunit TusD; Validated;
Region: PRK00207"
/db_xref="CDD:178928"
gene 377691..378047
/locus_tag="O3Y_01655"
/db_xref="GeneID:11913298"
CDS 377691..378047
/locus_tag="O3Y_01655"
/note="COG2923 Uncharacterized protein involved in the
oxidation of intracellular sulfur"
/codon_start=1
/transl_table=11
/product="tRNA 2-thiouridine synthesizing protein C"
/protein_id="YP_005332206.1"
/db_xref="GI:379740237"
/db_xref="GeneID:11913298"
/translation="MNKVAWVFHTPPHGSTAGREGLDAILATSAYSEEQALFFVGEGV
LQLVNHQHPESILSRDYISAFKLLDLYDIEARYVCQQSLVSWGLSEQDLLIEVEVVDA
QALAQLLHHYDQLLTF"
misc_feature 377697..378044
/locus_tag="O3Y_01655"
/note="sulfur relay protein TusC/DsrF; Region:
sulf_tusC_dsrF; TIGR03010"
/db_xref="CDD:200229"
gene 378057..378332
/locus_tag="O3Y_01660"
/db_xref="GeneID:11913299"
CDS 378057..378332
/locus_tag="O3Y_01660"
/note="COG2168 Uncharacterized conserved protein involved
in oxidation of intracellular sulfur"
/codon_start=1
/transl_table=11
/product="tRNA 2-thiouridine synthesizing protein B"
/protein_id="YP_005332207.1"
/db_xref="GI:379740238"
/db_xref="GeneID:11913299"
/translation="MLHIVKHLEKLPLLSAYLLDGDVVLLTENAVYAAAVHSPYQASI
NDQNLWLVLYEDLHARGWLEKCDPRISVVTMSDFVDLTVTHDKSITW"
misc_feature 378057..378329
/locus_tag="O3Y_01660"
/note="Uncharacterized conserved protein involved in
oxidation of intracellular sulfur [Inorganic ion transport
and metabolism]; Region: DsrH; COG2168"
/db_xref="CDD:225079"
gene 378517..378891
/gene="rpsL"
/locus_tag="O3Y_01665"
/db_xref="GeneID:11913300"
CDS 378517..378891
/gene="rpsL"
/locus_tag="O3Y_01665"
/note="COG0048 Ribosomal protein S12"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_005332208.1"
/db_xref="GI:379740239"
/db_xref="GeneID:11913300"
/translation="MATINQLVRKPRAKQVVKSNVPALAACPQKRGVCTRVYTTTPKK
PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
DCAGVNDRKQARSKYGVKRPKS"
misc_feature 378523..378846
/gene="rpsL"
/locus_tag="O3Y_01665"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:239466"
misc_feature order(378526..378531,378535..378540,378547..378552)
/gene="rpsL"
/locus_tag="O3Y_01665"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:239466"
misc_feature 378526..378528
/gene="rpsL"
/locus_tag="O3Y_01665"
/note="S8 interaction site; other site"
/db_xref="CDD:239466"
misc_feature order(378550..378558,378592..378594,378598..378603,
378607..378609,378652..378657,378661..378669,
378688..378690,378712..378714,378721..378726,
378763..378768,378778..378783,378844..378846)
/gene="rpsL"
/locus_tag="O3Y_01665"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(378643..378648,378778..378780)
/gene="rpsL"
/locus_tag="O3Y_01665"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:239466"
misc_feature 378646..378651
/gene="rpsL"
/locus_tag="O3Y_01665"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(378649..378666,378724..378750)
/gene="rpsL"
/locus_tag="O3Y_01665"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:239466"
gene 379007..379477
/locus_tag="O3Y_01670"
/db_xref="GeneID:11913301"
CDS 379007..379477
/locus_tag="O3Y_01670"
/note="COG0049 Ribosomal protein S7"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_005332209.1"
/db_xref="GI:379740240"
/db_xref="GeneID:11913301"
/translation="MPRRRVIGQRKILPDPKFKSELLAKFVNILMVDGKKSTAEKIVY
TALDTMAEKSGKDHLAVFEEALENVRPAVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
WLVEAARKRGEKSMAARLAAEMLDAAENKGSAVKKREDVHRMAEANKAFAHYRW"
misc_feature 379007..379474
/locus_tag="O3Y_01670"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:235398"
gene 379553..381649
/locus_tag="O3Y_01675"
/db_xref="GeneID:11913302"
CDS 379553..381649
/locus_tag="O3Y_01675"
/note="COG0480 Translation elongation factors (GTPases)"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_005332210.1"
/db_xref="GI:379740241"
/db_xref="GeneID:11913302"
/translation="MARKTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVH
DGAATMDWMVQEQERGITITSAATTTFWRGMEAQFQEHRINIIDTPGHVDFTIEVERS
LRVLDGAVVVFCGTSGVEPQSETVWRQADKYGVPRMVFVNKMDRAGADFLRVVGQIKH
RLGANPVPIQLNIGAEEEFKGVIDLIKMKAINWNEADQGMSFTYEEIPADMLELAQEW
RNHLVEAAAEASEELMEKYLEDGELSEVEIKQALRQRTINNEIVLAACGSAFKNKGVQ
AVLDAVIEFLPSPTDVPAIKGIDDRENSVERHADDNEPFSSLAFKIATDPFVGSLTFI
RVYSGVVNSGDAVYNSVKQKKERFGRIVQMHANKRDEIKEIRAGDIAAAIGLKDVTTG
DTLCDPNHVVILERMEFPEPVIQIAVEPRSKADQEKMGIALGKLAAEDPSFRVETDAE
TGQTLISGMGELHLDIIVDRMKREFGVDCNVGKPQVAYRETIRGKSEVEGKFVRQSGG
RGQYGHVWLKIEPAEPGQGFVFVDAIAGGVIPKEFINPVAKGIEEQMNNGVLAGYPVL
DVKATLFDGSFHDVDSSEMAFKIAGSMAFKKGALEAQPVLLEPLMKVEITTPEDWMGD
VVGDLNRRRGIIEGMDEGPAGLKIIHAKVPLSEMFGYATDLRSATQGRASYSMEFAEY
ADVPKNIADAIIAEHG"
misc_feature 379553..381640
/locus_tag="O3Y_01675"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:234569"
misc_feature 379586..380419
/locus_tag="O3Y_01675"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 379601..379624
/locus_tag="O3Y_01675"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(379604..379606,379610..379612,379622..379627,
379634..379636,379643..379648,379748..379753,
379826..379831,379898..379903,380009..380011,
380021..380023)
/locus_tag="O3Y_01675"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(379610..379612,379616..379627,379976..379981,
379985..379987,380354..380362)
/locus_tag="O3Y_01675"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 379691..379750
/locus_tag="O3Y_01675"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 379736..379738
/locus_tag="O3Y_01675"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 379814..379825
/locus_tag="O3Y_01675"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 379820..379876
/locus_tag="O3Y_01675"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 379976..379987
/locus_tag="O3Y_01675"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 380354..380362
/locus_tag="O3Y_01675"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 380495..380743
/locus_tag="O3Y_01675"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:239755"
misc_feature 381014..381361
/locus_tag="O3Y_01675"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:238715"
misc_feature 381374..381610
/locus_tag="O3Y_01675"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:239683"
gene 381772..382956
/locus_tag="O3Y_01680"
/db_xref="GeneID:11913303"
CDS 381772..382956
/locus_tag="O3Y_01680"
/note="COG0050 GTPases - translation elongation factors"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_005332211.1"
/db_xref="GI:379740242"
/db_xref="GeneID:11913303"
/translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGGKA
RDFASIDNAPEERERGITINTSHVEYDTPNRHYAHVDCPGHADYVKNMITGAAQMDGG
ILVVAATDGPMPQTREHILLGRQVGIPYIIVFMNKCDMVDDEELLELVEMEVRELLSE
YDFPGDDLPVIQGSALGALNGEAQWEAKIVELAEALDTYIPEPERAVDMAFLMPIEDV
FSIQGRGTVVTGRIERGILKVGDEVAIVGIKETVKTTCTGVEMFRKLLDEGRAGENVG
ALLRGTKREEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFR
TTDVTGSIELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKI
IA"
misc_feature 381772..382953
/locus_tag="O3Y_01680"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 381802..382380
/locus_tag="O3Y_01680"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 381826..381849
/locus_tag="O3Y_01680"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(381829..381831,381835..381837,381847..381852,
381859..381861,381868..381873,381883..381885,
381967..381972,382024..382029,382096..382101,
382105..382116,382123..382125,382216..382218,
382228..382230,382306..382311)
/locus_tag="O3Y_01680"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(381835..381852,381910..381912,382177..382182,
382186..382188,382291..382299)
/locus_tag="O3Y_01680"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 381937..381969
/locus_tag="O3Y_01680"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 381955..381957
/locus_tag="O3Y_01680"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 382012..382023
/locus_tag="O3Y_01680"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 382018..382074
/locus_tag="O3Y_01680"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 382177..382188
/locus_tag="O3Y_01680"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 382291..382299
/locus_tag="O3Y_01680"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 382402..382662
/locus_tag="O3Y_01680"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 382669..382938
/locus_tag="O3Y_01680"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(382705..382707,382711..382719,382771..382773,
382891..382899,382927..382929)
/locus_tag="O3Y_01680"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 383259..383447
/locus_tag="O3Y_01685"
/db_xref="GeneID:11913304"
CDS 383259..383447
/locus_tag="O3Y_01685"
/note="COG2906 Bacterioferritin-associated ferredoxin"
/codon_start=1
/transl_table=11
/product="bacterioferritin-associated ferredoxin"
/protein_id="YP_005332212.1"
/db_xref="GI:379740243"
/db_xref="GeneID:11913304"
/translation="MYVCLCHGVSDKKIRRLVAEQGITDIKGIKRCTALGSQCGKCVR
QAKEIIEESLIAQFKLAS"
misc_feature 383259..383444
/locus_tag="O3Y_01685"
/note="Bacterioferritin-associated ferredoxin [Inorganic
ion transport and metabolism]; Region: Bfd; COG2906"
/db_xref="CDD:225458"
gene 383517..383993
/locus_tag="O3Y_01690"
/db_xref="GeneID:11913305"
CDS 383517..383993
/locus_tag="O3Y_01690"
/note="COG2193 Bacterioferritin (cytochrome b1)"
/codon_start=1
/transl_table=11
/product="bacterioferritin"
/protein_id="YP_005332213.1"
/db_xref="GI:379740244"
/db_xref="GeneID:11913305"
/translation="MKGDPVIIQHLNKVLANELIAINQYFLHARMYKDWGLKHLADKE
YHESIDEMKHADHIVERILFLEGIPNLQDLGKLMIGEDVQEMLECDLKLELIAIPDLK
EAIAYAEKVRDYVSRDLFQEILEDEEEHVDWLETQLGLIDMTGIQNYLQAQFVDDE"
misc_feature 383517..383987
/locus_tag="O3Y_01690"
/note="Bacterioferritin (cytochrome b1) [Inorganic ion
transport and metabolism]; Region: Bfr; COG2193"
/db_xref="CDD:225104"
misc_feature 383520..383975
/locus_tag="O3Y_01690"
/note="Bacterioferritin, ferritin-like diiron-binding
domain; Region: Bacterioferritin; cd00907"
/db_xref="CDD:153099"
misc_feature order(383559..383561,383583..383585,383604..383606,
383649..383651,383670..383672,383682..383684)
/locus_tag="O3Y_01690"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:153099"
misc_feature order(383565..383570,383574..383579,383589..383591,
383667..383669,383676..383678,383793..383798,
383805..383807,383817..383819,383892..383897)
/locus_tag="O3Y_01690"
/note="ferroxidase pore; other site"
/db_xref="CDD:153099"
misc_feature order(383568..383570,383589..383591,383667..383669,
383676..383678,383796..383798,383817..383819,
383895..383897,383904..383906)
/locus_tag="O3Y_01690"
/note="ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153099"
gene 384205..384573
/gene="rpsF"
/locus_tag="O3Y_01695"
/db_xref="GeneID:11913306"
CDS 384205..384573
/gene="rpsF"
/locus_tag="O3Y_01695"
/note="COG0360 Ribosomal protein S6"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_005332214.1"
/db_xref="GI:379740245"
/db_xref="GeneID:11913306"
/translation="MRHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGR
RQLAYPINKLHKAHYVLMNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITEPSIM
LKAREERVKRDEMKFDADVE"
misc_feature 384205..384525
/gene="rpsF"
/locus_tag="O3Y_01695"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 384581..384883
/locus_tag="O3Y_01700"
/db_xref="GeneID:11913307"
CDS 384581..384883
/locus_tag="O3Y_01700"
/note="COG2965 Primosomal replication protein N"
/codon_start=1
/transl_table=11
/product="primosomal replication protein N"
/protein_id="YP_005332215.1"
/db_xref="GI:379740246"
/db_xref="GeneID:11913307"
/translation="MTNRIELSGVVAKALVRSQSPSGVKHCHFWLEHRSTMVEADLPR
QVFCRLPVVVSGARSEALTQNLVQGSSILVSGFLAYQTSRNGVGKLVLHADKISQI"
misc_feature 384593..384871
/locus_tag="O3Y_01700"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:239942"
misc_feature order(384593..384604,384677..384685,384722..384724,
384728..384730,384791..384793,384818..384820,
384848..384850)
/locus_tag="O3Y_01700"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239942"
misc_feature order(384608..384616,384632..384634,384662..384664,
384683..384688,384716..384721,384725..384727,
384731..384733,384737..384739,384743..384745,
384782..384787,384809..384811,384815..384817,
384821..384826,384851..384853,384857..384859)
/locus_tag="O3Y_01700"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:239942"
misc_feature order(384791..384793,384797..384799,384803..384805)
/locus_tag="O3Y_01700"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239942"
gene 384899..385126
/gene="rpsR"
/locus_tag="O3Y_01705"
/db_xref="GeneID:11913308"
CDS 384899..385126
/gene="rpsR"
/locus_tag="O3Y_01705"
/note="COG0238 Ribosomal protein S18"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_005332216.1"
/db_xref="GI:379740247"
/db_xref="GeneID:11913308"
/translation="MARFFRRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRI
TGTSAKYQRQLARAIKRARYLALLPYTDKHQ"
misc_feature <384938..385117
/gene="rpsR"
/locus_tag="O3Y_01705"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene 385160..385609
/gene="rplI"
/locus_tag="O3Y_01710"
/db_xref="GeneID:11913309"
CDS 385160..385609
/gene="rplI"
/locus_tag="O3Y_01710"
/note="COG0359 Ribosomal protein L9"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_005332217.1"
/db_xref="GI:379740248"
/db_xref="GeneID:11913309"
/translation="MQVILLDKIGNLGSLGDTVNVKSGYARNFLIPQGKAVMATKANV
AMFESRRAELEAKVAEQLAAAQTRADQVNALEAVVIASKAGDEGKLFGSIGTRDIADA
ITAAGVKVSKSEVRLPEGALRNVGAYEVSVQLHSEVFATAKVQVVAE"
misc_feature 385160..385606
/gene="rplI"
/locus_tag="O3Y_01710"
/note="50S ribosomal protein L9; Reviewed; Region: rplI;
PRK00137"
/db_xref="CDD:234659"
misc_feature 385160..385303
/gene="rplI"
/locus_tag="O3Y_01710"
/note="Ribosomal protein L9, N-terminal domain; Region:
Ribosomal_L9_N; pfam01281"
/db_xref="CDD:201708"
misc_feature 385343..385606
/gene="rplI"
/locus_tag="O3Y_01710"
/note="Ribosomal protein L9, C-terminal domain; Region:
Ribosomal_L9_C; pfam03948"
/db_xref="CDD:146531"
gene complement(385671..386435)
/locus_tag="O3Y_01715"
/db_xref="GeneID:11913310"
CDS complement(385671..386435)
/locus_tag="O3Y_01715"
/note="COG3137 Putative salt-induced outer membrane
protein"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_005332218.1"
/db_xref="GI:379740249"
/db_xref="GeneID:11913310"
/translation="MSTKWLLGISLMLSTVAQANENSNQDTDISIPSPWKHQVEFGYQ
AHSGNTESESLNSRLKSEYTMGRHRTYGEWKFYKLDKNGKEDKRQSTFAFQSDYKLGP
KTYLYGSFYGTNSRYTAYFKDHTLSGGLGYQFAYTDEMVLELELGPGFRYQKPNLDEI
DDDDIVFPDLVQEAIFRSNLKAEWQALNNLRFEAEMTMVSGRSNTSLDSNISLTNDIT
DHIALKIRQSRQYHNRMPEGLSKADSVISVNLLFEF"
misc_feature complement(385674..386432)
/locus_tag="O3Y_01715"
/note="Putative salt-induced outer membrane protein [Cell
envelope biogenesis, outer membrane]; Region: COG3137"
/db_xref="CDD:225679"
gene 386606..388012
/locus_tag="O3Y_01720"
/db_xref="GeneID:11913311"
CDS 386606..388012
/locus_tag="O3Y_01720"
/note="COG0305 Replicative DNA helicase"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="YP_005332219.1"
/db_xref="GI:379740250"
/db_xref="GeneID:11913311"
/translation="MADPRTDNRNRKIPDAQVDAIKVPPHSLEAEQSVIGGLLLDNER
WDTVSEHVMTQDFYSRPHRLIFDGVKSILEAGKPLDLITLSEYLEQREQLEDVGGFAY
LADLAKNTPSAANINAYAEIVAERALVRNLIGVANEIADAGYDPQGRNAEDLLDLAES
KVFAIAEARTSENEGPKNVDSILERTLERIELLYKTPQDGVTGVNTGFTDLNKKTAGL
QGSDLIIVAARPSMGKTTFAMNLCENAAMEQDKPVLIFSLEMPAEQIMMRMLASLSRV
DQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGL
SLIMVDYLQLMRVPALTDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADK
RPVNSDLRESGSIEQDADLIMFIYRDEVYHPDSPLKGTAEIIIGKQRNGPIGSVRLTF
QGHYSRFDNYAGPAFDDE"
misc_feature 386618..388009
/locus_tag="O3Y_01720"
/note="replicative DNA helicase; Provisional; Region:
PRK08840"
/db_xref="CDD:181562"
misc_feature 386672..386980
/locus_tag="O3Y_01720"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:216111"
misc_feature 387230..387961
/locus_tag="O3Y_01720"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:238484"
misc_feature 387290..387310
/locus_tag="O3Y_01720"
/note="Walker A motif; other site"
/db_xref="CDD:238484"
misc_feature order(387305..387310,387623..387625,387746..387748,
387854..387856,387920..387922,387953..387955)
/locus_tag="O3Y_01720"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238484"
misc_feature 387614..387625
/locus_tag="O3Y_01720"
/note="Walker B motif; other site"
/db_xref="CDD:238484"
misc_feature order(387638..387643,387662..387670,387743..387769,
387851..387856,387890..387895)
/locus_tag="O3Y_01720"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:238484"
gene 388026..389111
/gene="alr"
/locus_tag="O3Y_01725"
/db_xref="GeneID:11913312"
CDS 388026..389111
/gene="alr"
/locus_tag="O3Y_01725"
/EC_number="5.1.1.1"
/note="COG0787 Alanine racemase"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_005332220.1"
/db_xref="GI:379740251"
/db_xref="GeneID:11913312"
/translation="MKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRH
IARHALGADAFGVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCE
EQLQALEQAQLETPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHF
GCADELDKSTTVEQTELFLSLTQGCQGERSLAASAGLLAWPQSQLEWVRPGIIMYGVS
PFVEKSAVQLGYQPVMTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDG
YPRTAPNGTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVA
AHIGTIGYELVTKLTSRVEMSYYGAGV"
misc_feature 388026..389093
/gene="alr"
/locus_tag="O3Y_01725"
/note="alanine racemase; Reviewed; Region: alr; PRK00053"
/db_xref="CDD:234600"
misc_feature 388032..389093
/gene="alr"
/locus_tag="O3Y_01725"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzymes, Proteobacterial Alanine Racemases; Region:
PLPDE_III_AR_proteobact; cd06827"
/db_xref="CDD:143500"
misc_feature order(388119..388121,388125..388127,388137..388139,
388257..388259,388389..388391,388410..388412,
388494..388496,388500..388502,388602..388610,
388650..388661,389049..389051)
/gene="alr"
/locus_tag="O3Y_01725"
/note="active site"
/db_xref="CDD:143500"
misc_feature order(388119..388121,388125..388127,388137..388139,
388257..388259,388500..388502,388602..388607,
388650..388652,388656..388661,389049..389051)
/gene="alr"
/locus_tag="O3Y_01725"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143500"
misc_feature order(388125..388127,388137..388139,388410..388412,
388500..388502,389049..389051)
/gene="alr"
/locus_tag="O3Y_01725"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143500"
misc_feature order(388125..388127,388785..388787)
/gene="alr"
/locus_tag="O3Y_01725"
/note="catalytic residues [active]"
/db_xref="CDD:143500"
misc_feature order(388746..388748,388755..388757,388773..388778,
388782..388790,388827..388829,388842..388844,
388860..388862,388926..388928,388932..388934,
389043..389045,389049..389054,389067..389069,
389076..389078)
/gene="alr"
/locus_tag="O3Y_01725"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143500"
gene complement(389194..389613)
/locus_tag="O3Y_01730"
/db_xref="GeneID:11913313"
CDS complement(389194..389613)
/locus_tag="O3Y_01730"
/note="COG0432 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332221.1"
/db_xref="GI:379740252"
/db_xref="GeneID:11913313"
/translation="MWHQHTIQLRPRARGFHLITDEIEQQLPQIKRLNVGLLHLFVQH
TSASLTINENADPTVRQDMEAHFNHAAPEGAPYYRHIDEGDDDMPAHIKSSLLGCSVS
IPIQQGRLALGTWQGIYLGEHRNHGGIRRVIATIQGE"
misc_feature complement(389200..389613)
/locus_tag="O3Y_01730"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG0432"
/db_xref="CDD:223509"
gene 389901..391550
/gene="pgi"
/locus_tag="O3Y_01735"
/db_xref="GeneID:11913314"
CDS 389901..391550
/gene="pgi"
/locus_tag="O3Y_01735"
/EC_number="5.3.1.9"
/note="COG0166 Glucose-6-phosphate isomerase"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate isomerase"
/protein_id="YP_005332222.1"
/db_xref="GI:379740253"
/db_xref="GeneID:11913314"
/translation="MKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSAR
FGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALR
NRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDL
GPYMVTEALVPYKNHLTMHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTN
AHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSA
IGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEA
ILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLI
HQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKS
AAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQW
GVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA"
misc_feature 389904..391547
/gene="pgi"
/locus_tag="O3Y_01735"
/note="glucose-6-phosphate isomerase; Reviewed; Region:
pgi; PRK00179"
/db_xref="CDD:234679"
misc_feature 390261..390728
/gene="pgi"
/locus_tag="O3Y_01735"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_1; cd05015"
/db_xref="CDD:240146"
misc_feature order(390363..390365,390369..390374,390519..390527,
390534..390536,390705..390707)
/gene="pgi"
/locus_tag="O3Y_01735"
/note="active site"
/db_xref="CDD:240146"
misc_feature order(390444..390455,390540..390542,390552..390554,
390561..390563)
/gene="pgi"
/locus_tag="O3Y_01735"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240146"
misc_feature 390891..391460
/gene="pgi"
/locus_tag="O3Y_01735"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_2; cd05016"
/db_xref="CDD:240147"
misc_feature order(390891..390893,390915..390917,390951..390953,
390963..390965,390972..390977,391035..391037,
391041..391049,391056..391061,391068..391073,
391080..391082,391146..391148,391152..391154,
391176..391178,391185..391187)
/gene="pgi"
/locus_tag="O3Y_01735"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240147"
misc_feature order(390951..390953,390963..390965)
/gene="pgi"
/locus_tag="O3Y_01735"
/note="active site"
/db_xref="CDD:240147"
gene 391753..392931
/locus_tag="O3Y_01740"
/db_xref="GeneID:11913315"
CDS 391753..392931
/locus_tag="O3Y_01740"
/note="COG2220 Predicted Zn-dependent hydrolases of the
beta-lactamase fold"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_005332223.1"
/db_xref="GI:379740254"
/db_xref="GeneID:11913315"
/translation="MSETAIQTKTQARQRKVFAHHHVQHYRSQLERRISHSPQFREGK
VINAMPHITATPSWWQTAWSYFGGRAQLKPNAQLPVAPLNLQALQTRSKALRVTWLGH
SSLFIEVDGLRVLTDPVFDYASPWIAKAWFARNLPNSGVREQLPLPDVIVISHDHYDH
LEQASVVYYAAHSVTFYVPLGVGQHLIRWGVSPERIIEFDWWEQIKREGVEFICTPAN
HNSGRYYLDHNATLWCSWVIKGHQETLYFSGDSAYDTHFAKIAERCGPIDLACLEVAA
DVKQHQGYPVENWGHMQAKHTVQAFRDLQAKKLLPIHWATYELFTHQWDEPIADLVKH
CQEQSITLLTPMAGESLTMANHSASHAWWQGLETEPMSGARYWQMGLACSLLLLLMVV
"
misc_feature 392035..392832
/locus_tag="O3Y_01740"
/note="Predicted Zn-dependent hydrolases of the
beta-lactamase fold [General function prediction only];
Region: COG2220"
/db_xref="CDD:225130"
misc_feature 392089..392691
/locus_tag="O3Y_01740"
/note="Beta-lactamase superfamily domain; Region:
Lactamase_B_2; pfam12706"
/db_xref="CDD:221727"
gene complement(393048..393509)
/locus_tag="O3Y_01745"
/db_xref="GeneID:11913316"
CDS complement(393048..393509)
/locus_tag="O3Y_01745"
/note="COG1406 Predicted inhibitor of MCP methylation,
homolog of CheC"
/codon_start=1
/transl_table=11
/product="chemotaxis protein CheX"
/protein_id="YP_005332224.1"
/db_xref="GI:379740255"
/db_xref="GeneID:11913316"
/translation="MRAEFVNPFLASLMNVLKTMASLELKPQKPRIKKDEIARGDVSG
LIGMIGPTTRGSMSITFDESLALEIMQNMLGERPNGLNEEVTDMVGEITNMVTGGAKR
ILAESGFDFDMATPVVVSGRGHTIRHKCEGAIILMPFSSPWGNAFIEICFE"
misc_feature complement(393051..393509)
/locus_tag="O3Y_01745"
/note="Predicted inhibitor of MCP methylation, homolog of
CheC [Cell motility and secretion]; Region: COG1406"
/db_xref="CDD:224324"
misc_feature complement(393090..393386)
/locus_tag="O3Y_01745"
/note="Chemotaxis phosphatase CheX; Region: CheX;
pfam13690"
/db_xref="CDD:222321"
gene complement(393519..393983)
/locus_tag="O3Y_01750"
/db_xref="GeneID:11913317"
CDS complement(393519..393983)
/locus_tag="O3Y_01750"
/note="COG0735 Fe2+/Zn2+ uptake regulation proteins"
/codon_start=1
/transl_table=11
/product="zinc uptake regulation protein"
/protein_id="YP_005332225.1"
/db_xref="GI:379740256"
/db_xref="GeneID:11913317"
/translation="MVMVLDNKLTKQIEEICAARGVRLTSQRKTVFELICASKRSSSA
YELLEDLKKSEPQAKPPTVYRALDFLLEQGFIHRVESTNSFISCCSCNAHKHFSHLLI
CDQCGNVIESRDDSLVALLASNAEKHGFTISNHVIESHGVCQTCLSKEKKQQ"
misc_feature complement(393555..393905)
/locus_tag="O3Y_01750"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(393651..393653,393684..393686,
393696..393698,393717..393719,393861..393863))
/locus_tag="O3Y_01750"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(393765..393809)
/locus_tag="O3Y_01750"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(393579..393581,393630..393632,
393687..393689,393699..393701))
/locus_tag="O3Y_01750"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(393558..393584,393588..393596,
393621..393626,393672..393680))
/locus_tag="O3Y_01750"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(393555..393557,393666..393668,
393675..393677))
/locus_tag="O3Y_01750"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 394341..395324
/locus_tag="O3Y_01755"
/db_xref="GeneID:11913318"
CDS 394341..395324
/locus_tag="O3Y_01755"
/note="COG0042 tRNA-dihydrouridine synthase"
/codon_start=1
/transl_table=11
/product="tRNA-dihydrouridine synthase A"
/protein_id="YP_005332226.1"
/db_xref="GI:379740257"
/db_xref="GeneID:11913318"
/translation="MTHSCRLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAII
HGRGDFLAYNQEEHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGR
FGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCE
QFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHL
QHLDGVMIGREAYQNPYLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERELSQGTHLG
HMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIPYQELGV"
misc_feature 394341..395303
/locus_tag="O3Y_01755"
/note="tRNA-dihydrouridine synthase A; Provisional;
Region: PRK11815"
/db_xref="CDD:236991"
misc_feature 394356..395075
/locus_tag="O3Y_01755"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:239200"
misc_feature order(394368..394376,394449..394451,394527..394529,
394608..394610,394734..394736,394833..394835,
394953..394955,394959..394961,395019..395024)
/locus_tag="O3Y_01755"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239200"
misc_feature order(394527..394529,394617..394622,394734..394736,
394740..394742,394830..394835,394839..394844,
394956..394961,395022..395024)
/locus_tag="O3Y_01755"
/note="active site"
/db_xref="CDD:239200"
misc_feature order(394617..394619,394740..394742,394833..394835,
394839..394841)
/locus_tag="O3Y_01755"
/note="catalytic residues [active]"
/db_xref="CDD:239200"
misc_feature order(394620..394622,394734..394736,394830..394832,
394842..394844,394956..394961)
/locus_tag="O3Y_01755"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239200"
gene 395488..395697
/gene="pspG"
/locus_tag="O3Y_01760"
/db_xref="GeneID:11913319"
CDS 395488..395697
/gene="pspG"
/locus_tag="O3Y_01760"
/codon_start=1
/transl_table=11
/product="phage shock protein G"
/protein_id="YP_005332227.1"
/db_xref="GI:379740258"
/db_xref="GeneID:11913319"
/translation="MFELIFIFVFAATLLVTGITLMSVFGAMALAFLIMALFGMLGIV
LKLLPWLLVVLVVVWLMRDKAKAAR"
gene 395786..396451
/locus_tag="O3Y_01765"
/db_xref="GeneID:11913320"
CDS 395786..396451
/locus_tag="O3Y_01765"
/codon_start=1
/transl_table=11
/product="ABC-type Fe3+-hydroxamate transport system
component"
/protein_id="YP_005332228.1"
/db_xref="GI:379740259"
/db_xref="GeneID:11913320"
/translation="MNRTASAALVTALMVMPLSASAAESFYTASVGAEMWLASTKIDN
TRRDDANAPNLYFTFEHGFPYLPNVGLRYTNLEADFASFDKIDYTFYYPLLNRELMKF
DVGITLTQYANSDYRAPDARRYDFDQTTFNWYASAEITIPHTPFDVIGQFDFGNNSDL
KSSDVMAGLQYHLPIRAGDLAFKAGYRVVDLEFTELAKQSTDVKQSFVFADGWFVGAQ
FSF"
misc_feature 395792..396448
/locus_tag="O3Y_01765"
/note="outer membrane protein; Region: OMP_w_GlyGly;
TIGR04219"
/db_xref="CDD:234505"
gene 396572..396802
/locus_tag="O3Y_01770"
/db_xref="GeneID:11913321"
CDS 396572..396802
/locus_tag="O3Y_01770"
/note="COG0125 Thymidylate kinase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332229.1"
/db_xref="GI:379740260"
/db_xref="GeneID:11913321"
/translation="MTIPELRELYQTQQLVEAIIEPSFQEGEWIVEFRHQMGGFVLLT
DENGEECRYIDLDSASQSAMAVGFRQVRIENQ"
gene 396909..398732
/locus_tag="O3Y_01775"
/db_xref="GeneID:11913322"
CDS 396909..398732
/locus_tag="O3Y_01775"
/note="COG0369 Sulfite reductase, alpha subunit
(flavoprotein)"
/codon_start=1
/transl_table=11
/product="sulfite reductase [NADPH] flavoprotein
alpha-component"
/protein_id="YP_005332230.1"
/db_xref="GI:379740261"
/db_xref="GeneID:11913322"
/translation="MSTGNTLPPALAALASPLNDAQLNQLQQTVTQLNAQQLAWVSGY
FWGLSQSNALSVPHISAGQTASAASGKLTIIFASQTGNAKGVAQALLKEAQAAGIQAQ
LFDASDYKGKDLAKETHVIFVASTNGEGEAPDNALALHEFLKSKKAPKLPNLKYGVLG
LGDSSYQFFCQTGKDFDQFLENLGAQRLVERLDADVDYQAAATEWRKQVLSILKDELT
GAAAVTSVATFAVSQTAESHYSKEQPYTASLSTSQKITGRDSGKDVRHIEIDLADSGI
TYQPGDALGVWYENRPQLVNALLDSVGLSGHEEVQVDGETLSLHSALTHHYEITAANP
QLVAQFAELAQSEKLTSLAQDKEALREYATRTQVIDVLREEKVTLSAIQLLSLLRRLT
PRLYSIASSQSEVGEEVHLTVGVVEYEYEGEQRLGGASSFLAHQLEEGAPVKVFVEHN
NNFKLPSDDNAPLIMVGPGTGIAPFRSFIQERENRGAAGKNWLLFGDRTFTQDFLYQV
EWQKYLKSGVLNRLDVAFSRDQHEKVYVQHRLLEQAELVWQWLQEGAYFYVCGDASRM
AKDVHQALITVVEQQGGLNREQAEEYVSELRKAKRYQRDVY"
misc_feature 397026..398729
/locus_tag="O3Y_01775"
/note="sulfite reductase [NADPH] flavoprotein,
alpha-component; Region: cysJ; TIGR01931"
/db_xref="CDD:233643"
misc_feature 397128..397520
/locus_tag="O3Y_01775"
/note="Flavodoxin; Region: Flavodoxin_1; pfam00258"
/db_xref="CDD:215823"
misc_feature 397653..398729
/locus_tag="O3Y_01775"
/note="Cytochrome p450- like alpha subunits of E. coli
sulfite reductase (SiR) multimerize with beta subunits to
catalyze the NADPH dependent reduction of sulfite to
sulfide. Beta subunits have an Fe4S4 cluster and a
siroheme, while the alpha subunits (cysJ...; Region: SiR;
cd06199"
/db_xref="CDD:99796"
misc_feature order(397755..397757,398088..398099,398142..398144,
398148..398150,398187..398198)
/locus_tag="O3Y_01775"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99796"
misc_feature order(398088..398090,398094..398099)
/locus_tag="O3Y_01775"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99796"
misc_feature order(398097..398099,398586..398588,398721..398723,
398727..398729)
/locus_tag="O3Y_01775"
/note="catalytic residues [active]"
/db_xref="CDD:99796"
misc_feature order(398148..398159,398310..398312,398316..398318,
398397..398402,398487..398492,398511..398513,
398517..398519,398604..398606)
/locus_tag="O3Y_01775"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99796"
misc_feature order(398187..398189,398196..398198,398205..398207)
/locus_tag="O3Y_01775"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99796"
misc_feature order(398301..398303,398313..398324,398328..398330)
/locus_tag="O3Y_01775"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99796"
gene 398732..400465
/locus_tag="O3Y_01780"
/db_xref="GeneID:11913323"
CDS 398732..400465
/locus_tag="O3Y_01780"
/note="COG0155 Sulfite reductase, beta subunit
(hemoprotein)"
/codon_start=1
/transl_table=11
/product="sulfite reductase subunit beta"
/protein_id="YP_005332231.1"
/db_xref="GI:379740262"
/db_xref="GeneID:11913323"
/translation="MSANQNPSVQEVLGEVLGPWSDNERLKRESHFLRGTIEQDLQDR
ITGGFTADNFQLIRFHGMYQQDDRDIRAERSKQKLEPLHNVMLRARMPGGIITPHQWL
AIDKFATEHTLYGSIRLTTRQTFQFHGVLKPNIKLMHQTLNSIGIDSIATAGDVNRNV
LCTSNPVESELHLQAYEWAKKISEHLLPKTRAYAEIWLDGEKIEGPDEEPILGSNYLP
RKFKTTVVIPPHNDVDVHANDLNFVAIGENGQLVGFNVLVGGGLAMTHGDTSTYPRRA
DDFGFIPLEKTLEVAAAVVSTQRDWGNRSNRKNAKTKYTLDRVGVEVFKAEVEKRAGI
TFAPSRAYEFTSRGDRIGWVEGIDGKHHLTLFIENGRILDFPGKPLKTGVAEIAKVHQ
GDFRMTANQNLIVAGVPADQKPHIEQLAREHGLIDDGVSEQRINSMACVAFPTCPLAM
AEAERFLPSFVTEVEGILAKHALPKEENIILRVTGCPNGCGRAMLAEIGLVGKAPGRY
NLHLGGNRNGTRIPKMYKENITDTQILQEIDELVGRWASERLDGEGFGDFTIRAGIIE
EVIISKRDFYA"
misc_feature 398759..400459
/locus_tag="O3Y_01780"
/note="sulfite reductase subunit beta; Provisional;
Region: PRK13504"
/db_xref="CDD:184095"
misc_feature 398984..399166
/locus_tag="O3Y_01780"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:202646"
misc_feature 399803..400000
/locus_tag="O3Y_01780"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:202646"
gene 400458..401219
/locus_tag="O3Y_01785"
/db_xref="GeneID:11913324"
CDS 400458..401219
/locus_tag="O3Y_01785"
/EC_number="1.8.4.8"
/note="COG0175 3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes"
/codon_start=1
/transl_table=11
/product="phosphoadenosine phosphosulfate reductase"
/protein_id="YP_005332232.1"
/db_xref="GI:379740263"
/db_xref="GeneID:11913324"
/translation="MPNRTVPTLEELLTLNKVQQTLRLTEVNQHLESLTAQERVVWGL
ENLQGNHALSSSFGIQAAVMLHLLTSVKSDIPVVLTDTGYLFPETYQFIDELTERLNL
NLKVYSAPVSAAWQEARYGKLWEQGVEGIERYNQINKVEPMRRALDELNIGTWFSGLR
REQSQSRASLPILSVQNGVFKFLPVIDWTNKEVHYYLKDNDLPYHPLWEQGYLSVGDT
HTTQKWQPGMNEEQTRFFGLKRECGLHEDHNDTHQ"
misc_feature 400503..401195
/locus_tag="O3Y_01785"
/note="3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism]; Region: CysH; COG0175"
/db_xref="CDD:223253"
misc_feature 400605..401105
/locus_tag="O3Y_01785"
/note="This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly...;
Region: PAPS_reductase; cd01713"
/db_xref="CDD:238846"
misc_feature order(400872..400874,400956..400958,400986..400988,
400998..401000)
/locus_tag="O3Y_01785"
/note="Active Sites [active]"
/db_xref="CDD:238846"
gene 401757..403300
/locus_tag="O3Y_r13489"
/db_xref="GeneID:11913325"
rRNA 401757..403300
/locus_tag="O3Y_r13489"
/product="16S ribosomal RNA"
/db_xref="GeneID:11913325"
gene 403361..403437
/locus_tag="O3Y_t13327"
/db_xref="GeneID:11913326"
tRNA 403361..403437
/locus_tag="O3Y_t13327"
/product="tRNA-Ile"
/db_xref="GeneID:11913326"
gene 403446..403522
/locus_tag="O3Y_t13329"
/db_xref="GeneID:11913327"
tRNA 403446..403522
/locus_tag="O3Y_t13329"
/product="tRNA-Ala"
/db_xref="GeneID:11913327"
gene 403808..406705
/locus_tag="O3Y_r13505"
/db_xref="GeneID:11913328"
rRNA 403808..406705
/locus_tag="O3Y_r13505"
/product="23S ribosomal RNA"
/db_xref="GeneID:11913328"
gene 406826..406941
/locus_tag="O3Y_r13471"
/db_xref="GeneID:11913329"
rRNA 406826..406941
/locus_tag="O3Y_r13471"
/product="5S ribosomal RNA"
/db_xref="GeneID:11913329"
gene 406967..407043
/locus_tag="O3Y_t13331"
/db_xref="GeneID:11913330"
tRNA 406967..407043
/locus_tag="O3Y_t13331"
/product="tRNA-Asp"
/db_xref="GeneID:11913330"
gene complement(407517..408851)
/locus_tag="O3Y_01790"
/db_xref="GeneID:11913331"
CDS complement(407517..408851)
/locus_tag="O3Y_01790"
/note="COG0025 NhaP-type Na+/H+ and K+/H+ antiporters"
/codon_start=1
/transl_table=11
/product="monovalent cation:H+ antiporter, CPA1 family
protein"
/protein_id="YP_005332233.1"
/db_xref="GI:379740264"
/db_xref="GeneID:11913331"
/translation="MSVYYTLCFLSAAAMLIAFINSKISRMQTTIAITAGSMMLSLLI
LIAGQNDWFHLNQIATETVTSINFENFLLKGILGFLLFAGGLGIKLPNLKDQKWEITV
LALGATLFSTFFIGFTLYGFCQLIGIQFDLVYCLLFGALISPTDPIAVLAIVKKLKAP
KRISTQIEGESLFNDGFGLVIFVTIFTIAFGHETPTVGSVTLLFIQEAIGGIVYGFLL
GLLFHYLISATDDHSMELLLTIGIPTAGYAFADVIHVSGPLAMVVSGIMIGNWTRFIG
FSKESEEHLDHFWELVDEFLNGVLFLLIGMSMLLFEFHQEDWILMAFAVPLVLCGRYL
SVFVSYIGFKRYRSYNPWSIRILTWGGLRGGLALAMALSIPSGIMVIPEKLIDVKELI
LVMTYAVVVFSILVQGSTITPMIEKAKKAEKALQAERNTDNQSPMPQQEQQH"
misc_feature complement(407607..408821)
/locus_tag="O3Y_01790"
/note="NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism]; Region: NhaP; COG0025"
/db_xref="CDD:223104"
gene 409048..412728
/gene="metH"
/locus_tag="O3Y_01795"
/db_xref="GeneID:11913332"
CDS 409048..412728
/gene="metH"
/locus_tag="O3Y_01795"
/EC_number="2.1.1.13"
/note="COG0646 Methionine synthase I
(cobalamin-dependent), methyltransferase domain"
/codon_start=1
/transl_table=11
/product="B12-dependent methionine synthase"
/protein_id="YP_005332234.1"
/db_xref="GI:379740265"
/db_xref="GeneID:11913332"
/translation="MGKEVRQQLEQQLKQRILLIDGGMGTMIQSYKLQEEDYRGARFV
DWHCDLKGNNDLLVLTQPQIIKEIHSAYLEAGADILETNTFNSTTIAMADYDMQSLSA
EINFAAAKLAREVADEWTAKDPSRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGL
VEAYSESTRALIKGGSDLILIETIFDTLNAKACAFAVDSVFEELGISLPVMISGTITD
ASGRTLSGQTTEAFYNALRHVRPISFGLNCALGPDELRQYVEELSRISECYVSAHPNA
GLPNAFGEYDLSAEEMAEHIAEWAQAGFLNLVGGCCGTTPEHIAAIAKAVEGVKPRAL
PDLKVECRLSGLEPLNIGPETLFVNVGERTNVTGSARFKRLIKEEQYDEALDVAREQV
ENGAQIIDINMDEGMLDAEACMVRFLNLCASEPEISKVPVMVDSSKWEVIEAGLKCIQ
GKGIVNSISLKEGKEKFIAQAKLVRRYGAAVIVMAFDEVGQADTRERKLEICRRAYHI
LVDEVGFPPEDIIFDPNIFAVATGIDEHNNYALDFINAVADIKRELPHAMISGGVSNV
SFSFRGNNYVREAIHAVFLYHCFKHGMDMGIVNAGQLEIYDNVPLKLREAVEDVILNR
RSDGTERLLEIAEAYRENSVGKEEDASALEWRAWPVAKRLEHALVKGITEFIVQDTEE
ARQQASKPLEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFINAQ
KSGSTSNGKILLATVKGDVHDIGKNIVGVVLQCNNFEIIDLGVMVPCEQILKVAREQN
VDIIGLSGLITPSLDEMVHVAKEMERQGFELPLLIGGATTSKAHTAVKIEQNYHAPVV
YVNNASRAVGVCTSLLSDEQRPGFIERLDLDYERTRDQHARKTPKSRPVTLEQARANK
AALDWANYTPPAPAKPGVHVFENIALATLRPYIDWTPFFMTWSLMGKYPAILEHEEVG
EEAKRLFHDANALLDKVEREGLLKASGMCALFPAASVGDDIEVYSDESRTQVAHVLYN
LRQQTEKPKGANYCLSDYVAPKESGKRDWIGAFAVTGGIGERALADAYKAQGDDYNAI
MIQAVADRLAEAFAEYLHEKVRKEIWGYASDENLSNDDLIRERYQGIRPAPGYPACPE
HTEKATLWQMLNVEETIGMSLTTSYAMWPGASVSGWYFSHPDSRYFAVAQIQPDQLHS
YAERKGWRLEEAEKWLAPNLDA"
misc_feature 409048..412722
/gene="metH"
/locus_tag="O3Y_01795"
/note="B12-dependent methionine synthase; Provisional;
Region: metH; PRK09490"
/db_xref="CDD:236539"
misc_feature 409051..410031
/gene="metH"
/locus_tag="O3Y_01795"
/note="Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism]; Region: MetH; COG0646"
/db_xref="CDD:223719"
misc_feature 410116..410877
/gene="metH"
/locus_tag="O3Y_01795"
/note="MeTr subgroup of pterin binding enzymes. This
family includes cobalamin-dependent methyltransferases
such as methyltetrahydrofolate, corrinoid iron-sulfur
protein methyltransferase (MeTr) and methionine synthase
(MetH). Cobalamin-dependent...; Region: MeTr; cd00740"
/db_xref="CDD:238381"
misc_feature order(410140..410142,410350..410352,410413..410415,
410419..410421,410497..410499,410614..410616,
410731..410733,410743..410745,410836..410838,
410842..410844)
/gene="metH"
/locus_tag="O3Y_01795"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238381"
misc_feature 411025..411663
/gene="metH"
/locus_tag="O3Y_01795"
/note="B12 binding domain of methionine synthase. This
domain binds methylcobalamin, which it uses as an
intermediate methyl carrier from methyltetrahydrofolate
(CH3H4folate) to homocysteine (Hcy); Region:
methionine_synthase_B12_BD; cd02069"
/db_xref="CDD:239020"
misc_feature order(411130..411132,411142..411144,411193..411195,
411202..411204,411316..411336,411343..411345,
411454..411462,411466..411474,411553..411555,
411619..411621,411628..411630,411637..411639)
/gene="metH"
/locus_tag="O3Y_01795"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:239020"
misc_feature 411325..411327
/gene="metH"
/locus_tag="O3Y_01795"
/note="cobalt ligand [ion binding]; other site"
/db_xref="CDD:239020"
misc_feature 412216..412629
/gene="metH"
/locus_tag="O3Y_01795"
/note="Vitamin B12 dependent methionine synthase,
activation domain; Region: Met_synt_B12; pfam02965"
/db_xref="CDD:111813"
gene complement(412801..414156)
/locus_tag="O3Y_01800"
/db_xref="GeneID:11913333"
CDS complement(412801..414156)
/locus_tag="O3Y_01800"
/EC_number="2.7.2.4"
/note="COG0527 Aspartokinases"
/codon_start=1
/transl_table=11
/product="aspartate kinase III"
/protein_id="YP_005332235.1"
/db_xref="GI:379740266"
/db_xref="GeneID:11913333"
/translation="MSTFNVAKFGGTSVANFEAMSRCSAIIENNPQTRLVVSSACSGV
TNLLVELANGVASTERRQAILQQLADIHYVIIDQLADPTRVEKEVKAVLDSVASAAEA
ASFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDDHYGRAEPQL
KEIAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGL
EIWTDVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVF
VGSSKEPEKGGTWIRKQVESAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILA
KHKISVDLITTSEISVSLTLDKTDTSGGAPELPEAVRAELEELCTVEVEYNLCLIALI
GNKMKESRGYAKQVFSVLEDYNLRMICYGASAHNLCFLLHESVSKQAVQKLHKELFEQ
E"
misc_feature complement(412807..414147)
/locus_tag="O3Y_01800"
/note="aspartate kinase III; Validated; Region: PRK09084"
/db_xref="CDD:236376"
misc_feature complement(413284..414147)
/locus_tag="O3Y_01800"
/note="Amino Acid Kinases (AAK) superfamily, catalytic
domain; present in such enzymes like N-acetylglutamate
kinase (NAGK), carbamate kinase (CK), aspartokinase (AK),
glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK
superfamily includes kinases that...; Region: AAK;
cl00452"
/db_xref="CDD:241871"
misc_feature complement(order(413473..413478,413485..413490,
414121..414129,414133..414135))
/locus_tag="O3Y_01800"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:239033"
misc_feature complement(order(413548..413556,414034..414042,
414124..414129,414133..414135))
/locus_tag="O3Y_01800"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239033"
misc_feature complement(413008..413232)
/locus_tag="O3Y_01800"
/note="ACT domains located C-terminal to the catalytic
domain of the lysine-sensitive aspartokinase isoenzyme
AKIII; Region: ACT_AKiii-LysC-EC_1; cd04932"
/db_xref="CDD:153204"
misc_feature complement(order(413116..413121,413134..413142,
413179..413184,413191..413193,413200..413202))
/locus_tag="O3Y_01800"
/note="lysine allosteric regulatory site; other site"
/db_xref="CDD:153204"
misc_feature complement(order(413086..413088,413092..413094,
413116..413118,413122..413136,413140..413142,
413146..413148,413167..413169,413176..413181,
413188..413196))
/locus_tag="O3Y_01800"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153204"
misc_feature complement(412810..413001)
/locus_tag="O3Y_01800"
/note="ACT domains located C-terminal to the catalytic
domain of the lysine-sensitive aspartokinase isoenzyme
AKIII; Region: ACT_AKiii-LysC-EC_2; cd04917"
/db_xref="CDD:153189"
misc_feature complement(order(412888..412917,412921..412926,
412936..412938,412945..412959,412963..412968))
/locus_tag="O3Y_01800"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153189"
gene 414620..415738
/locus_tag="O3Y_01805"
/db_xref="GeneID:11913334"
CDS 414620..415738
/locus_tag="O3Y_01805"
/note="COG0075 Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase"
/codon_start=1
/transl_table=11
/product="alanine--glyoxylate transaminase /
serine--pyruvate aminotransferase"
/protein_id="YP_005332236.1"
/db_xref="GI:379740267"
/db_xref="GeneID:11913334"
/translation="MTIRSFIPPHRILMGPGPSAISPQVLQALSRPTVGHLDPLFIGM
MDELKQLLKYAFQTENEFTIAVSAPGSAGMEACFVNLVEPGDKVIVCRNGVFGERMRD
NAVRCGAEVVVVDDEWGCPVSVEKVQATIDEHPDAKILAFVQAETSTGALSDAQALGA
LAKQHGLLTIVDAVTSLGGVPLLVDEWQLDAVYSGSQKCLSCVPGLAPLTFSPRAIEK
IQSRKTPIQSWFLDQSLVLGYWSGAGKRSYHHTAPVNSLYALHEALLLLQQEGLEHAW
QRHRLMHEKLKQGLEQLGFQFVVAEPYRLPQLNAIYVPEGIEEAKVRSHLLNEYNLEI
GAGLGALAGKAWRIGVMGYGARSENIALCLRALEESLR"
misc_feature 414653..415735
/locus_tag="O3Y_01805"
/note="Alanine-glyoxylate aminotransferase (AGAT) family.
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to alanine-glyoxylate
aminotransferase (AGAT); Region: AGAT_like; cd06451"
/db_xref="CDD:99744"
misc_feature order(414695..414697,414704..414706,414725..414727,
414731..414733,414821..414826,414842..414844,
414914..414916,414923..414925,414935..414940,
415208..415210,415229..415231,415307..415309,
415367..415378,415598..415600)
/locus_tag="O3Y_01805"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99744"
misc_feature order(414824..414832,414905..414907,415058..415060,
415133..415135,415139..415141,415208..415213)
/locus_tag="O3Y_01805"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99744"
misc_feature 415211..415213
/locus_tag="O3Y_01805"
/note="catalytic residue [active]"
/db_xref="CDD:99744"
gene complement(415817..417601)
/locus_tag="O3Y_01810"
/db_xref="GeneID:11913335"
CDS complement(415817..417601)
/locus_tag="O3Y_01810"
/note="COG3307 Lipid A core - O-antigen ligase and related
enzymes"
/codon_start=1
/transl_table=11
/product="O-antigen polymerase"
/protein_id="YP_005332237.1"
/db_xref="GI:379740268"
/db_xref="GeneID:11913335"
/translation="MATLLLSGTRLEPHAPNLPLNKPFLFALAVVYLLAMHFFMPNPG
GAGLALSFNTTVWIATSITLAIGLYQLANNQALRYSKLTIGLWLSCALLTLPITYSNA
DWFHTLGRLVGLWAGFTLFLVLQQFRFSNKHKQRLLWFILLGSVIEAVIGLIQYFWLE
PGNPFGYDTEANRPYGIFQQPNVMASFLATGLVLSGYLLARQPEKYDSRWSKIGILYA
TPLLTAPLLVVLASRTGWLASLLSIALVAPYLYRFASRRRFTLWLLAITLGICAGFTA
MYGQGTSGFVANKADLESPRRFTFPQTIDMIIEKPFTGYGYGKFEAQYLLYTARQHQL
NSSYPAGLASMDHPHNELLYWGVEGGLLPVMGILLAACFCALRIYAAKRGTRMAMLAL
FVPITLHAQLEYPFYHSAIHWITFIILIYWVDQRVARYRLASFTTLTKSLLRITSLVL
PIVTSLYMVTALHTNYVLTQFEKSQPLNPELLKNVTNPLVWQDRFDWDIYSTYLNIGL
HEQKAELIQPYIDWSLQIIQHKPRPAFYSNLILAYQGLGDTSRAQQIRREAEFLFPNQ
DFSTVQYHPSIKVNSATSDAEVPSAATP"
misc_feature complement(416333..417496)
/locus_tag="O3Y_01810"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:225844"
misc_feature complement(416516..416908)
/locus_tag="O3Y_01810"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:218334"
misc_feature complement(415883..416443)
/locus_tag="O3Y_01810"
/note="Domain of unknown function (DUF3366); Region:
DUF3366; pfam11846"
/db_xref="CDD:221262"
gene complement(417666..420488)
/gene="uvrA"
/locus_tag="O3Y_01815"
/db_xref="GeneID:11913336"
CDS complement(417666..420488)
/gene="uvrA"
/locus_tag="O3Y_01815"
/note="COG0178 Excinuclease ATPase subunit"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit A"
/protein_id="YP_005332238.1"
/db_xref="GI:379740269"
/db_xref="GeneID:11913336"
/translation="MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDT
LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
EVYDYLRLLYARVGEPRCPEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKG
EHVKTLENLAAQGFIRARIDGETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLA
ESFETALELSGGIVVVAPMEGDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGAC
PTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTP
FNKLSKKIQEIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSV
REELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQ
RAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVM
YVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVH
GGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKN
VDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFD
KVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCE
ACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREF
FDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILD
EPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLI
IAEGTPEDVAQIEASHTARFLKPLLN"
misc_feature complement(417669..420488)
/gene="uvrA"
/locus_tag="O3Y_01815"
/note="excinuclease ABC subunit A; Reviewed; Region: uvrA;
PRK00349"
/db_xref="CDD:234734"
misc_feature complement(<420141..420479)
/gene="uvrA"
/locus_tag="O3Y_01815"
/note="ATP-binding cassette domain I of the excision
repair protein UvrA; Region: ABC_UvrA_I; cd03270"
/db_xref="CDD:213237"
misc_feature complement(<419538..419741)
/gene="uvrA"
/locus_tag="O3Y_01815"
/note="Cysteine-rich CPCC; Region: Cys_rich_CPCC;
pfam14206"
/db_xref="CDD:222593"
misc_feature complement(418767..>419105)
/gene="uvrA"
/locus_tag="O3Y_01815"
/note="ATP-binding cassette domain I of the excision
repair protein UvrA; Region: ABC_UvrA_I; cd03270"
/db_xref="CDD:213237"
misc_feature complement(417792..418652)
/gene="uvrA"
/locus_tag="O3Y_01815"
/note="ATP-binding cassette domain II of the excision
repair protein UvrA; Region: ABC_UvrA_II; cd03271"
/db_xref="CDD:213238"
gene complement(420644..421516)
/locus_tag="O3Y_01820"
/db_xref="GeneID:11913337"
CDS complement(420644..421516)
/locus_tag="O3Y_01820"
/note="COG1210 UDP-glucose pyrophosphorylase"
/codon_start=1
/transl_table=11
/product="UTP--glucose-1-phosphate uridylyltransferase"
/protein_id="YP_005332239.1"
/db_xref="GI:379740270"
/db_xref="GeneID:11913337"
/translation="MIKKCLFPAAGYGTRFLPATKSMPKEMMPVVNKPLIEYGVDEAI
QAGITGMCIVTGRGKHSIMDHFDMNYELEHQIRGTNKEELLGDIRKIIESANFTFIRQ
REMKGLGHAILTGKELVGDEPFAVVLADDLCVNEEQGVLAQMVALYKQFRCSIVAVQE
VPENETHKYGVIAGEMIKDDLFRVDNMVEKPEPGTAPSNLAIIGRYILTPDIFDLIEQ
TEPGKGGEIQITDALLKQAKAGCVLAYKFKGKRFDCGSVEGYIEATNFCYENMYKKND
QKVELAKKSTHKGQ"
misc_feature complement(420725..421510)
/locus_tag="O3Y_01820"
/note="Prokaryotic UGPase catalyses the synthesis of
UDP-glucose; Region: UGPase_prokaryotic; cd02541"
/db_xref="CDD:133021"
misc_feature complement(420674..421507)
/locus_tag="O3Y_01820"
/note="dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane]; Region: RfbA; COG1209"
/db_xref="CDD:224130"
misc_feature complement(order(420827..420829,420911..420913,
420947..420952,421007..421012,421124..421129,
421133..421135,421193..421204,421211..421213,
421439..421444,421484..421495))
/locus_tag="O3Y_01820"
/note="active site"
/db_xref="CDD:133021"
misc_feature complement(order(420725..420727,420731..420739,
420743..420751,420767..420769,420839..420841,
421013..421015,421202..421204,421208..421210,
421214..421219,421301..421306,421316..421318,
421322..421330,421334..421336,421406..421408,
421418..421426,421430..421438,421448..421456,
421460..421474,421481..421483))
/locus_tag="O3Y_01820"
/note="tetramer interface; other site"
/db_xref="CDD:133021"
gene complement(421689..422333)
/locus_tag="O3Y_01825"
/db_xref="GeneID:11913338"
CDS complement(421689..422333)
/locus_tag="O3Y_01825"
/note="COG2771 DNA-binding HTH domain-containing proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332240.1"
/db_xref="GI:379740271"
/db_xref="GeneID:11913338"
/translation="MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLL
REYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFETILFNVEKRLRTEDLLTFGNLK
GLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL"
misc_feature complement(421695..422318)
/locus_tag="O3Y_01825"
/note="DNA-binding transcriptional regulator CsgD;
Provisional; Region: PRK10100"
/db_xref="CDD:182241"
misc_feature complement(421701..421871)
/locus_tag="O3Y_01825"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature complement(order(421728..421730,421761..421775,
421779..421784,421788..421793,421815..421823,
421860..421868))
/locus_tag="O3Y_01825"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(order(421701..421706,421713..421715,
421722..421730,421821..421823,421827..421829,
421833..421835))
/locus_tag="O3Y_01825"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 422625..423158
/locus_tag="O3Y_01830"
/db_xref="GeneID:11913339"
CDS 422625..423158
/locus_tag="O3Y_01830"
/note="COG0629 Single-stranded DNA-binding protein"
/codon_start=1
/transl_table=11
/product="single-stranded DNA-binding protein"
/protein_id="YP_005332241.1"
/db_xref="GI:379740272"
/db_xref="GeneID:11913339"
/translation="MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDK
ATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEV
VVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF"
misc_feature 422637..423155
/locus_tag="O3Y_01830"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:223702"
misc_feature 422649..422939
/locus_tag="O3Y_01830"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:239942"
misc_feature order(422649..422660,422733..422741,422784..422786,
422790..422792,422853..422855,422880..422882,
422913..422915,422922..422924)
/locus_tag="O3Y_01830"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239942"
misc_feature order(422664..422672,422688..422690,422718..422720,
422739..422744,422778..422783,422787..422789,
422793..422795,422799..422801,422805..422807,
422844..422849,422871..422873,422877..422879,
422883..422888,422925..422927,422931..422933)
/locus_tag="O3Y_01830"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:239942"
misc_feature order(422853..422855,422859..422861,422865..422867)
/locus_tag="O3Y_01830"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239942"
gene 423336..425294
/locus_tag="O3Y_01835"
/db_xref="GeneID:11913340"
CDS 423336..425294
/locus_tag="O3Y_01835"
/note="COG2199 FOG: GGDEF domain"
/codon_start=1
/transl_table=11
/product="regulatory protein CsrD"
/protein_id="YP_005332242.1"
/db_xref="GI:379740273"
/db_xref="GeneID:11913340"
/translation="MTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDP
DAAYSMQRWMPKMLQASGIIEMQLTSEAGPIYRFKDTTNTIEASRLHQVALPLKRNPG
YVMHFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRM
ILAGRVEQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGT
ANRVLYDSKLESALLESGAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIV
QRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGV
TMYQEGERRGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLR
PEEILLYRQACYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLD
RAVFSSVVSFLKRSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFS
EAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKI
DQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQML
PPLPPEPLKRPPRLSVKPIGKRNRWRTK"
misc_feature 423336..425204
/locus_tag="O3Y_01835"
/note="regulatory protein CsrD; Provisional; Region:
PRK11059"
/db_xref="CDD:236833"
misc_feature 423972..424430
/locus_tag="O3Y_01835"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(424068..424070,424203..424205)
/locus_tag="O3Y_01835"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(424107..424109,424119..424121,424191..424193,
424197..424208)
/locus_tag="O3Y_01835"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(424179..424181,424263..424265)
/locus_tag="O3Y_01835"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 424500..425186
/locus_tag="O3Y_01835"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
gene 425307..426746
/locus_tag="O3Y_01840"
/db_xref="GeneID:11913341"
CDS 425307..426746
/locus_tag="O3Y_01840"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshI"
/protein_id="YP_005332243.1"
/db_xref="GI:379740274"
/db_xref="GeneID:11913341"
/translation="MKKPSWIEKLIAPKVASQQLYVVVQPEHLYFTSDDLSPIPPQPL
QQQSWQAVLVQTLQKHAVHDVQIHLVLHSQLYQTYQIEQPSIPREEWSAALPFLLKDM
LSEKVTDVVADAHPLPGSGKVQAYVISKRTILELQSMAVSAGLTLGRVIPEQAIWGLV
GGELSHFLLLHRSMGGSFKLDAFVDRQCSFQRTLRGITAPVTDNAASALQLDSLALEL
QRSIDYLSAQLKGGSLQQLKVCCDGEDQQALITGLNERLSVRASGLDGEATICGEQLA
RYARNIPQETINFYQDHLKPKREKFTLTNLLLAWLALSVVLLLGYAGVGYQNWVIQQQ
WQEQQQHNQSLTEQAAHLRQQVAVHLPSPAKQAAIGRIKQEISSKQQALDAIGQFDVA
QQTGYSGVLNSLAQLARSDISLSSITLDSSQLNVQGLARDPAAIPNWISQFKQELHLM
GRSFEQLKIGRNDQDMITFELNTQRGEQR"
gene 426743..427393
/locus_tag="O3Y_01845"
/db_xref="GeneID:11913342"
CDS 426743..427393
/locus_tag="O3Y_01845"
/note="COG0086 DNA-directed RNA polymerase, beta'
subunit/160 kD subunit"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshJ"
/protein_id="YP_005332244.1"
/db_xref="GI:379740275"
/db_xref="GeneID:11913342"
/translation="MKSGWQNFESRFSALSQREKVLITLCGSVLIVMMLLLGLIEPAL
KQGQARQLQMQTLTSSNLQLQGEIMALQAQLAKNPDQELDVELSQLTLQSQEISELLA
AKMTSMVAPSEMPNLLESVLKQGQQLKLVSLESLPAEPIVRATESRSESEYYIHPVRM
ELTGSYFAIRDYLQALEALPVKYYWRHFHYRVESYPQARVILEVYTLGSREEFIGG"
misc_feature 426929..>427282
/locus_tag="O3Y_01845"
/note="Pilus assembly protein, PilO; Region: PilO;
cl01234"
/db_xref="CDD:242380"
gene 427386..427703
/locus_tag="O3Y_01850"
/db_xref="GeneID:11913343"
CDS 427386..427703
/locus_tag="O3Y_01850"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshK"
/protein_id="YP_005332245.1"
/db_xref="GI:379740276"
/db_xref="GeneID:11913343"
/translation="MVRYGVLLALIAVTYSYAGEDPTAPLGWVSPAKPELQKPSYPVP
TLQSIVCAEGRSCYAIIEQRVVAQGDVVNGYRVATIHPDQVKLTRAGKEWRLALFTLD
IKQ"
misc_feature 427476..427673
/locus_tag="O3Y_01850"
/note="Type IV pilus biogenesis; Region: Pilus_PilP;
pfam11356"
/db_xref="CDD:221092"
gene 427718..429397
/locus_tag="O3Y_01855"
/db_xref="GeneID:11913344"
CDS 427718..429397
/locus_tag="O3Y_01855"
/note="COG4796 Type II secretory pathway, component HofQ"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshL"
/protein_id="YP_005332246.1"
/db_xref="GI:379740277"
/db_xref="GeneID:11913344"
/translation="MRKIVLASVVTSLVGCSMGHRDPVEAKQALNQAINETNSRQIDQ
LPPSVEADLMPDMDTLTASEPKTLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVT
GRITLNLTDVTLDEALGVVRDLYGFEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGR
SLTSITTGTITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTN
ESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR
QVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLD
AIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY
VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQT
KKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVP
ALGHLFRNTTKLTQKTELVILLKPTVVGVNTWQKELERSRSLLQEWFPDSQ"
misc_feature <428339..428461
/locus_tag="O3Y_01855"
/note="Secretin N-terminal domain; Region: Secretin_N_2;
pfam07655"
/db_xref="CDD:219500"
misc_feature 428441..429322
/locus_tag="O3Y_01855"
/note="pilus (MSHA type) biogenesis protein MshL; Region:
pilus_MshL; TIGR02519"
/db_xref="CDD:233908"
misc_feature 428792..429325
/locus_tag="O3Y_01855"
/note="Bacterial type II and III secretion system protein;
Region: Secretin; pfam00263"
/db_xref="CDD:215826"
gene 429402..430247
/locus_tag="O3Y_01860"
/db_xref="GeneID:11913345"
CDS 429402..430247
/locus_tag="O3Y_01860"
/note="COG3267 Type II secretory pathway, component ExeA
(predicted ATPase)"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshM"
/protein_id="YP_005332247.1"
/db_xref="GI:379740278"
/db_xref="GeneID:11913345"
/translation="MYLSHFGLEQLPFHLTPDTELFLGLAPHFEAIQTLSAAIEMGEG
VSKLTGEVGTGKTMVCRMLLTHLGDEVALIYLPNPMLSGEELRQAVAAELQLDVASPV
RVVEQIQTRLIELHQQGKRVVALVDEAQALSDEALETLRLFGNLETEQTKLLQIVLIG
QPELDVRLAQHHLRQFRQRITFNANLRPLTQAETEVYIESRLQKAQAPYPLFNATLKK
AVWRASQGIPRLINQICHKALLLAWHEQSPLVNQHHLFAAIHDTYDSCKPRFKTPILW
GWSKP"
misc_feature 429402..430175
/locus_tag="O3Y_01860"
/note="Type II secretory pathway, component ExeA
(predicted ATPase) [Intracellular trafficking and
secretion]; Region: ExeA; COG3267"
/db_xref="CDD:225806"
misc_feature 429543..429950
/locus_tag="O3Y_01860"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 429549..429572
/locus_tag="O3Y_01860"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(429552..429575,429780..429782,429882..429884)
/locus_tag="O3Y_01860"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 429768..429785
/locus_tag="O3Y_01860"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 429924..429926
/locus_tag="O3Y_01860"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 430244..431395
/locus_tag="O3Y_01865"
/db_xref="GeneID:11913346"
CDS 430244..431395
/locus_tag="O3Y_01865"
/note="COG0457 FOG: TPR repeat"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshN"
/protein_id="YP_005332248.1"
/db_xref="GI:379740279"
/db_xref="GeneID:11913346"
/translation="MSVVNEALAKSAQRSHSRLSNIERIDVAKPKARPAWLWVMLGFG
VSLAVGGWSISLQSVDTIPSSAEVVRPEVPSPTQKTTQQSIALYQAPVNSEALVKNET
LVQKETLPKNETSVKNAVLAKVEGSPTSLKQTANRQREQTALGSELNAEPVLNLVDNS
EPSFFEEEVSSLPSSSPVMIVEQVSLTPEQLAQKALQRAQKAMESNELQTAVSAYTEA
LRYTPHDEMARQKLAALYYGKGDGRKAFDLMQAGIERNPDGEVLRLALAKLLVKEKQE
ASALVPLAYLPSQPSIEYLSLRAALAQKTKQDEIARESYQQLTEKDPNNGRWWLGLAI
QQERALQWPAAQHAYQQALNKVGLSSQSQAFIHQRLQLLASLEETQSAN"
misc_feature 430850..431014
/locus_tag="O3Y_01865"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:222112"
misc_feature 430934..431305
/locus_tag="O3Y_01865"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(430934..430936,430943..430948,431129..431134,
431138..431143,431150..431155,431231..431236,
431243..431248,431255..431260)
/locus_tag="O3Y_01865"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature order(430940..430942,430976..430978,430988..430990,
430997..430999,431138..431140,431174..431176,
431186..431188,431195..431197,431240..431242,
431276..431278,431288..431290,431297..431299)
/locus_tag="O3Y_01865"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature 431114..431305
/locus_tag="O3Y_01865"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:222112"
gene 431385..433112
/locus_tag="O3Y_01870"
/db_xref="GeneID:11913347"
CDS 431385..433112
/locus_tag="O3Y_01870"
/note="COG2804 Type II secretory pathway, ATPase PulE/Tfp
pilus assembly pathway, ATPase PilB"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshE"
/protein_id="YP_005332249.1"
/db_xref="GI:379740280"
/db_xref="GeneID:11913347"
/translation="MPINKLRKRLGDLLVEEGIVSEAQLEQALNAQKNTGRRLGDTLI
SLGFLSETQLLNFLAQQLSLPVIDLSRAHVDIDAVPLLPEVHARRLRALVIGRSGDTL
RIAMSDPADLFAQEALLNQLPDYGFEFVIAPEKQLVDGFDRYYRRTKEIVSFAEQLHA
EHKTNDSFDFEITDSDSDEVTVVKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDG
VLHETLLHEVNIASALVLRLKLMANLDISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQ
HGESVVMRLLNQSAGVRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLY
GALNELNTSGKKIITAEDPVEYRISRINQVQVNPKINLDFSTLLRTFLRQDPDIILVG
EMRDQETVEIGLRAALTGHLVLSTLHTNDAVDSALRLIDMGAPGYLVASAVRAVVAQR
LVRKVCPDCSGHDEVDEARRQWLVTRFPNQAAAKFTRGRGCQNCNLTGYRGRIGVFEM
LELDQPMMDCLRANDAVAFSKAARSNTDYKPLLASAMELALQGIVSLDEVMSLGEGDS
SGLVEPIYL"
misc_feature 431511..431837
/locus_tag="O3Y_01870"
/note="Type II secretion system (T2SS), protein E,
N-terminal domain; Region: T2SE_Nter; pfam05157"
/db_xref="CDD:218471"
misc_feature 431574..433067
/locus_tag="O3Y_01870"
/note="Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and secretion
/ Intracellular trafficking and secretion]; Region: PulE;
COG2804"
/db_xref="CDD:225363"
misc_feature 432093..432890
/locus_tag="O3Y_01870"
/note="RecA-like NTPases. This family includes the NTP
binding domain of F1 and V1 H+ATPases, DnaB and related
helicases as well as bacterial RecA and related eukaryotic
and archaeal recombinases. This group also includes
bacterial conjugation proteins and...; Region:
RecA-like_NTPases; cl17233"
/db_xref="CDD:247787"
misc_feature order(432351..432356,432366..432374)
/locus_tag="O3Y_01870"
/note="Walker A motif; other site"
/db_xref="CDD:238540"
misc_feature order(432354..432356,432366..432374,432429..432431,
432435..432440,432558..432563)
/locus_tag="O3Y_01870"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238540"
misc_feature 432546..432560
/locus_tag="O3Y_01870"
/note="Walker B motif; other site"
/db_xref="CDD:238540"
gene 433121..434344
/locus_tag="O3Y_01875"
/db_xref="GeneID:11913348"
CDS 433121..434344
/locus_tag="O3Y_01875"
/note="COG1459 Type II secretory pathway, component PulF"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshG"
/protein_id="YP_005332250.1"
/db_xref="GI:379740281"
/db_xref="GeneID:11913348"
/translation="MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQ
GAAEKSAFDFNWKALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQL
KAALDSVCNELTNGRNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQ
EVETRKRIKTAMRYPTFVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITT
SDFFVNYWGLLLGIIVGLLFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFA
RTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTP
LVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLAL
GIFLPMWGMMDALKG"
misc_feature 433121..434338
/locus_tag="O3Y_01875"
/note="Type II secretory pathway, component PulF [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PulF; COG1459"
/db_xref="CDD:224376"
misc_feature 433334..433705
/locus_tag="O3Y_01875"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
misc_feature 433943..434311
/locus_tag="O3Y_01875"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
gene 434347..434799
/locus_tag="O3Y_01880"
/db_xref="GeneID:11913349"
CDS 434347..434799
/locus_tag="O3Y_01880"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshF"
/protein_id="YP_005332251.1"
/db_xref="GI:379740282"
/db_xref="GeneID:11913349"
/translation="MKIGFERVRFVLWFVLVVVLLTAMFSVWRSMFSDMLHTALEMTR
LQLIDRANTYKQEWVLQGRPALLQIEQAEIPMQHGWVFPKLDQGVDCEKVLFLLYPDR
KVLDWLPRVTALQRANGYQCRYQYGDRVQLDVELKDRYFAINASFLMR"
gene 434880..435434
/locus_tag="O3Y_01885"
/db_xref="GeneID:11913350"
CDS 434880..435434
/locus_tag="O3Y_01885"
/codon_start=1
/transl_table=11
/product="MSHA pilin protein MshB"
/protein_id="YP_005332252.1"
/db_xref="GI:379740283"
/db_xref="GeneID:11913350"
/translation="MKKMQQGFSLVELVIVIVVVGLLAVAALPRFLDVTDEAKKASIE
GVAGGFATGVLSARAQWEAQARPTLTANNYPSINYDGVNFWLTTSATSGYRDGYPLGL
NTDDATYPSGLTDQACIDLMNNLLQNPPQVGTETQAASNSNYKYSAKANSGAATCTYA
QNEKGSQHEFVYEVNTGRVTVTLQ"
gene 435469..435996
/locus_tag="O3Y_01890"
/db_xref="GeneID:11913351"
CDS 435469..435996
/locus_tag="O3Y_01890"
/codon_start=1
/transl_table=11
/product="MSHA pilin protein MshA"
/protein_id="YP_005332253.1"
/db_xref="GI:379740284"
/db_xref="GeneID:11913351"
/translation="MKRQGGFTLIELVVVIVILGILAVTAAPRFLNLQGDAREASLEG
LRGAVAGAMGISYGRAAIKGIETLDYTAYTDANTPGTVIDGIAHKFGYPTAVNDSTAN
LGGIMQTLDTSSEFIALQSSTGTNSNQANLWIDIGFNGYNDLCVRYTAATSNNPATVA
MQTGVAGTACGKPAQ"
misc_feature 435469..>435720
/locus_tag="O3Y_01890"
/note="Type II secretory pathway, pseudopilin PulG [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PulG; COG2165"
/db_xref="CDD:225076"
gene 436033..436521
/locus_tag="O3Y_01895"
/db_xref="GeneID:11913352"
CDS 436033..436521
/locus_tag="O3Y_01895"
/codon_start=1
/transl_table=11
/product="MSHA pilin protein MshC"
/protein_id="YP_005332254.1"
/db_xref="GI:379740285"
/db_xref="GeneID:11913352"
/translation="MKIIGKGFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQS
EILASLRLTQSRAMQRTGYCNRWLLTSNAAIQVSPQAMQGSCLSVFPSNPTDPSWVDA
AVSGVALSLAGSGGASFLDFDSLGRATQCISAGCTVSISSSTHNEVRQVCINTEGYIY
AC"
gene 436511..437080
/locus_tag="O3Y_01900"
/db_xref="GeneID:11913353"
CDS 436511..437080
/locus_tag="O3Y_01900"
/codon_start=1
/transl_table=11
/product="MSHA pilin protein MshD"
/protein_id="YP_005332255.1"
/db_xref="GI:379740286"
/db_xref="GeneID:11913353"
/translation="MPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAE
QVLSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTG
ESNNTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPAT
ERTHYKRIALVIYDPQGNAYPFAAIKGNY"
gene 437080..437850
/locus_tag="O3Y_01905"
/db_xref="GeneID:11913354"
CDS 437080..437850
/locus_tag="O3Y_01905"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshO"
/protein_id="YP_005332256.1"
/db_xref="GI:379740287"
/db_xref="GeneID:11913354"
/translation="MSRGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREAL
IQQGRFLTERMSRELREAVPNSVIVANGCIEFLPIVNSAIYQSLPTNTVNTLRLLPIT
KSIQAGERLVISPNDPAALRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLF
TLQSPANRAYFYTTPVAYCYQGNSIYRYAGYSLNRTALSPAYLGNGVLMAQSLSGANF
SVLAPQLQRNGLVKIELTFADKGEQVRFDHDALVYNTP"
gene 437825..438247
/locus_tag="O3Y_01910"
/db_xref="GeneID:11913355"
CDS 437825..438247
/locus_tag="O3Y_01910"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshP"
/protein_id="YP_005332257.1"
/db_xref="GI:379740288"
/db_xref="GeneID:11913355"
/translation="MLWSTTHRKQQGNALILVVFIIVVVGFVALVANRNQARSSQQLV
SMVLGTRAEMAARSALNIELSRFYQSNKSAGSCYTTSPQSMDFAGEGLAQCEATVSCL
SLGALDNGQAVYQLSATGRCQVGDWSLQRIIEVGVKSE"
gene 438714..441998
/locus_tag="O3Y_01915"
/db_xref="GeneID:11913356"
CDS 438714..441998
/locus_tag="O3Y_01915"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshQ"
/protein_id="YP_005332258.1"
/db_xref="GI:379740289"
/db_xref="GeneID:11913356"
/translation="MGSGATLVLSSGDYWIESLQLNQGGEVVVDGDVRLFIRNNSDWN
SAQINVSGSGNLTIVGYNNITLNQSNQVKAYLYVGGTLTLHNTSVINGRVTSRRLFME
ANTEINQNEQQGYACFTDDFNRSSLGQNWIPYTSSGNFTPSIISNRMRLTEAITNQAT
AVTYQRIFPAAGNLVTVEFDYYAWANLTGNGADGVSVIFSDATVTPRTGGFGGSLGYA
QRTDTNPDTPGFAGGWLGVGLDEWGNYSNATEGRQGGPGFRQQAVAIRGSESANYQYL
VGTAANLNPKLDVRRTCQWWGCSFSGAGPGHRYFITIDSRSGGGVWVRVDRSVNGTMQ
TVIDWHNVLSNPNQGATPADFLLSLAGSTGASVNNHEIENFKVCALKSRPVGQLIDHF
RFTLPQQGLTCSASEVQIKACANDNCSQLYTDPVTATLSPNSAPSATGGWLGGSQVNF
NNGIATAQLRRNSVGNVSVNVLGSTPASKPFQVNLCSYTNNPNSYSTANCTVNFADSG
FIVDVPNAYANQTVTGTIKAVRKDNASQQCLPSFGNVQKSVAFWSEYLNPTANNSGFQ
SVSVGVNGTPIGQSANNATSISLNFNQNGEASFPISYREVGSLALHARFTGSGDEQDL
LLEGQDSFIRVPRALVLSANNPYNPTHPNGQCSAENISCNVFARADENFDLIIRAVVA
APIEDNDFTNNLTAYNYQQQNIALQHTLVQPSAGQSGVLGVNEYTHLLGGTTTIAQKV
SEVGVFDFSLFAPTHYLGLDLASANLPIAVTSTGSIGRFIPAYFSVSPMSNVTLDAAC
KTGNAFSYLGQPFEYSNSPGLYLQPKSANNADTQNYLIDPWWRYNNQWNGRTYSDSAN
GVNLGFDNLQTSPISRQALNNSGIVLNGERVWYQKPLQPKPVFNSAFDLTLNASNLTD
QDGVCYRQNASSPCLGYTFSHIDGAMPLYWGKLVIQDVYGPETQASEQPIYVEHFTNN
GFVRTIEDSCTALPAITGFTLQSDPNNNGYTVLTTGVAVPPQVLAEHSAANLNSGQRA
IRFSAPGAGALGVIDSVLDLNAHNLLWLAEDKDGDNNFDQTTQGRAQFGLYRGSDRVI
WWRESN"
misc_feature 439062..439850
/locus_tag="O3Y_01915"
/note="legume lectins; Region: lectin_L-type; cl14058"
/db_xref="CDD:209860"
misc_feature order(439062..439064,439068..439070,439101..439103,
439203..439205,439212..439214,439527..439529,
439641..439643,439677..439679,439683..439688,
439734..439736)
/locus_tag="O3Y_01915"
/note="homotetramer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:173886"
misc_feature order(439062..439070,439101..439103,439203..439205,
439209..439211)
/locus_tag="O3Y_01915"
/note="homodimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:173886"
misc_feature order(439290..439292,439803..439805)
/locus_tag="O3Y_01915"
/note="carbohydrate binding site [chemical binding]; other
site"
/db_xref="CDD:173886"
misc_feature order(439425..439427,439431..439433,439503..439505)
/locus_tag="O3Y_01915"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173886"
gene 442166..443209
/locus_tag="O3Y_01920"
/db_xref="GeneID:11913357"
CDS 442166..443209
/locus_tag="O3Y_01920"
/note="COG1077 Actin-like ATPase involved in cell
morphogenesis"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein MreB"
/protein_id="YP_005332259.1"
/db_xref="GI:379740290"
/db_xref="GeneID:11913357"
/translation="MFKKLRGMFSNDLSIDLGTANTLIYVKGQGIVLDEPSVVAIRQD
KGRGGKTVAAVGHAAKQMLGRTPGNISAIRPMKDGVIADFYVTEKMLQHFIRQVHDNS
VLKPSPRVLVCVPCGSTQVERRAIRESALGAGAREVYLIDEPMAAAIGAGLRVSEPTG
SMVIDIGGGTTEVAVISLNGVVYSSPVRIGGDRFDEAIINYVRRNYGSLIGEATAEKI
KHEIGSAYPGDDVQEIEVRGRNLAEGVPRSFTLNSNEILEALQEPLTGIVSAVMVALE
QCPPELASDISENGMVLTGGGALLKDLDRLLMEETGIPVVIADDPLTCVARGGGKALE
MIDMHGGDLFSEE"
misc_feature 442181..443200
/locus_tag="O3Y_01920"
/note="rod shape-determining protein MreB; Provisional;
Region: PRK13927"
/db_xref="CDD:184401"
misc_feature 442202..443176
/locus_tag="O3Y_01920"
/note="MreB and similar proteins; Region: MreB_like;
cd10225"
/db_xref="CDD:212668"
misc_feature order(442211..442213,442217..442228,442400..442402,
442592..442594,442658..442660,442664..442675,
442736..442741,442811..442813,442820..442825,
443048..443056,443060..443065,443129..443131,
443138..443140)
/locus_tag="O3Y_01920"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212668"
misc_feature order(442211..442213,442658..442660)
/locus_tag="O3Y_01920"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:212668"
misc_feature order(442289..442291,442349..442351,442373..442375,
442637..442639,442643..442645,442703..442705,
442799..442801,442805..442807,442874..442876,
442898..442900,442907..442909,442997..442999,
443006..443008,443102..443104,443174..443176)
/locus_tag="O3Y_01920"
/note="putative protofilament interaction site
[polypeptide binding]; other site"
/db_xref="CDD:212668"
misc_feature order(442619..442624,442646..442648,443024..443032,
443105..443107,443111..443113,443120..443122)
/locus_tag="O3Y_01920"
/note="RodZ interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212668"
gene 443266..444156
/locus_tag="O3Y_01925"
/db_xref="GeneID:11913358"
CDS 443266..444156
/locus_tag="O3Y_01925"
/note="COG1792 Cell shape-determining protein"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein MreC"
/protein_id="YP_005332260.1"
/db_xref="GI:379740291"
/db_xref="GeneID:11913358"
/translation="MKPIFGRGPSLQLRLFFAVMLSASLMLADSRLGAFSHVRFLLNS
LVAPIQYAADLPRVLFDDFYDSISSHQQLRENNQLLKREVLTLKSNLLLLEQYKEENQ
RLRKLLGSSFLRDEKKVVTEVMAVDTSPYRHQVVIDKGRVDGVYEGQPIINEKGIVGQ
VTFVAAHNSRVLLLIDPNTAIPVQNIRNDIRVIASGNGQTDQIQLEHIPTSTDIEVGD
MLVTSGLGGVYPEGYPVAIVSQVDKDTRREFASIKADPVVEFDRLRYLLLIWPNEDRL
QKVMQADPQVLLEEEANAQQ"
misc_feature 443269..444090
/locus_tag="O3Y_01925"
/note="rod shape-determining protein MreC; Provisional;
Region: PRK13922"
/db_xref="CDD:237560"
misc_feature 443629..444081
/locus_tag="O3Y_01925"
/note="rod shape-determining protein MreC; Region: MreC;
pfam04085"
/db_xref="CDD:217883"
gene 444143..444631
/locus_tag="O3Y_01930"
/db_xref="GeneID:11913359"
CDS 444143..444631
/locus_tag="O3Y_01930"
/note="COG2891 Cell shape-determining protein"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein MreD"
/protein_id="YP_005332261.1"
/db_xref="GI:379740292"
/db_xref="GeneID:11913359"
/translation="MLSSDIKGRMVILASFLLALILQTIPWPGTLDLFRPPWLLLVCC
YWVLALPHRVNVGSALVMGLLWDLLLGSTLGIRGMMMSIIIYLVAMNFLVLRNMALWQ
QAIVIGLLSMGLEVLIFCGEYLIQNVTFNPLSLWSGVIACILWPWMFLLLRRVRRHWH
VK"
misc_feature 444143..444628
/locus_tag="O3Y_01930"
/note="rod shape-determining protein MreD; Provisional;
Region: PRK11060"
/db_xref="CDD:182936"
gene 444691..445191
/locus_tag="O3Y_01935"
/db_xref="GeneID:11913360"
CDS 444691..445191
/locus_tag="O3Y_01935"
/note="COG0424 Nucleotide-binding protein implicated in
inhibition of septum formation"
/codon_start=1
/transl_table=11
/product="Maf-like protein"
/protein_id="YP_005332262.1"
/db_xref="GI:379740293"
/db_xref="GeneID:11913360"
/translation="MGYQFEVVVPNVEEKRAAAESPAQYVERLSRDKALAGAALVAAE
AVVIGSDTIVVKDQQVLEKPRDFADAKRMLLKLSGSQHQVMTGVSVTCRGITHSVVVT
TEVWFKTLSEQEIEAYWQSGEPCDKAGSYGIQGLGGRFVTRIEGSYHAVVGLPLYETD
QLLHKF"
misc_feature 444691..445179
/locus_tag="O3Y_01935"
/note="Nucleotide binding protein Maf. Maf has been
implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea, but homologs in
B.subtilis and S.cerevisiae are nonessential for cell
division. Maf has been predicted to be a nucleotide-
or...; Region: Maf; cd00555"
/db_xref="CDD:238310"
misc_feature order(444730..444732,444787..444789,444841..444843,
444877..444879)
/locus_tag="O3Y_01935"
/note="active site"
/db_xref="CDD:238310"
misc_feature order(444769..444771,444973..444990)
/locus_tag="O3Y_01935"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238310"
gene 445217..446686
/locus_tag="O3Y_01940"
/db_xref="GeneID:11913361"
CDS 445217..446686
/locus_tag="O3Y_01940"
/note="COG1530 Ribonucleases G and E"
/codon_start=1
/transl_table=11
/product="ribonuclease G"
/protein_id="YP_005332263.1"
/db_xref="GI:379740294"
/db_xref="GeneID:11913361"
/translation="MSAELLLNVTPSETRVAMIEGGILQEIHIEREAKRGIVGNIYKG
KVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAESEKQQFQVRDISELVRQGQD
IVVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKKIVSH
YCDEHGGFIIRTAAEGANEKELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQR
ILRDFVGTELTKILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEI
QRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQ
LRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKR
TRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVAD
TLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDVVMM"
misc_feature 445217..446683
/locus_tag="O3Y_01940"
/note="ribonuclease G; Provisional; Region: PRK11712"
/db_xref="CDD:183285"
misc_feature 445310..445600
/locus_tag="O3Y_01940"
/note="S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of RNA.
In addition to its role in mRNA degradation, RNase E has
also been implicated in the processing of rRNA, and...;
Region: S1_RNase_E; cd04453"
/db_xref="CDD:239900"
misc_feature order(445343..445345,445508..445510,445520..445522)
/locus_tag="O3Y_01940"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239900"
misc_feature order(445415..445417,445541..445543,445550..445552,
445559..445564,445592..445594)
/locus_tag="O3Y_01940"
/note="oligonucleotide binding site [chemical binding];
other site"
/db_xref="CDD:239900"
gene 446735..450574
/locus_tag="O3Y_01945"
/db_xref="GeneID:11913362"
CDS 446735..450574
/locus_tag="O3Y_01945"
/note="COG3164 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332264.1"
/db_xref="GI:379740295"
/db_xref="GeneID:11913362"
/translation="MWLLVSLLIVLALAVTALRILLPQMNRFQAEIQHWLNQNSSVQV
AIADVQGYWRNTHPSLSLQTLQAHWPDSNDIQLNAASVEIEFDLLQSLWQRQPVVADL
TVNGLVLDLRAIDWLALEQNPNPKQSRQGRVVKQLDDLLLRQLDDFTLKNSAILYRTF
AGDLRQLDIEKLRWQNQGLRHFAEGVVSIAGININSLLVSANFIDHGSLRDVSGDFYV
SADKVRVLPWLTRYLKDQTGIQKGQVSLNAWATLEHNQPKDGYVEFKPSELVWQNGEQ
THELLLESGIVELKPTEKGWQVNAHSLRLRSDDELWPLLDVAMDWQPDEWRLNLSQLN
IENLLPLAKLIPESQTLNHWLTTLKPKGTLEDVRIAKGATLESLRYSASLIDGGIAQW
ELLPQVNALQAQIQGSPSKALIKASMVDDVLPYGEVFQAPLNIRQGAVNLVWQQEQYG
WSLWSDKVTVATPDLQALGAFRLDFPDDASPFLSFYAEADLFNAGETWRYLPTLALGR
ELTDYLSTAIQAGQVNTAKLIWYGALDQFPYRMHNGVFQAWVGLKEAKFAFDTAWPPI
TDLQLDLLFENDAMYLDSRSATLMEVSAERITGRIPELAELGHIEIEAVASAQQGNAI
RNYMMATPLVDSVGAALTTIQVKGPVRSEFQLNIPFHSGAEPRAWGFAELSNNAVDID
TPPMSLTSVSGKIEFDNDRVSAAGLDARLLKQPVSIDFKGEDAKRGYAVGIDMVGDWE
VKPLIPFVGERWLSRVKGHAPWQASVDIQLNDVGFTYQLDGKADLRGLESRYPFPLKK
ALKVKGQALLQASGNQEMVSARLQLPQAKYQAEIDLTPKVPVLKATNLVLGQGSFKIS
PVVGHHVQLRSQAFNLDDWLSILNEKPAPKSRKSKLASLNTPAFPMPERVDAAVKELT
FAGLDWHDVDLNARRKDLGWLLNLDSQEIKGQANYIEPYDLSIALERLHLFLPQLEAG
EEALLVDLDRQKLPLITDFDRKFHQWMPNLTLTIKDFWLQGYKIGQANVDFQRQGDTL
LWKSIDFTSGTNQLHVNGTWTLTDTQSRTQMNLDMKGDNNSDLMARFGINSGIQRAPF
EITASTQWDGAPWSMQVNTLQGKVDTKLGKGVISDVSGAARLLGLFSLDSIIRKMQLD
FSDVFDKGMAFDSISGSGELSQGIFVTNNIKMDAVAGEMTIKGLADLNTRTVDAEVNF
VPDITSGIPVLTAFAVTPQTALYVLAITTVISPVVEVFTQVNYEVKGPLDSPTVKELS
RSKGEFKLPEKLRKLTE"
misc_feature 446801..450538
/locus_tag="O3Y_01945"
/note="TIGR02099 family protein; Region: TIGR02099"
/db_xref="CDD:233726"
misc_feature 449780..450505
/locus_tag="O3Y_01945"
/note="AsmA-like C-terminal region; Region: AsmA_2;
pfam13502"
/db_xref="CDD:222180"
gene 450583..451410
/locus_tag="O3Y_01950"
/db_xref="GeneID:11913363"
CDS 450583..451410
/locus_tag="O3Y_01950"
/note="COG0388 Predicted amidohydrolase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332265.1"
/db_xref="GI:379740296"
/db_xref="GeneID:11913363"
/translation="MQRVGLVQMTSGPEISRNLTYLKQEVAKLAQQGAQWIVTPENAL
LLGNREQYHQQAESLDHGPVQHALASLAKEYGVWLLIGSMPIRHAEGVTTSSLLWNAQ
GERVAVYDKLHMFDVDVADGHQRYRESETFTPGQQVVVTSTPFGALGLSICYDVRFPH
LYADLRRQGAQILLVPAAFTAVTGQAHWEVLLRARAIETQCWVIAVGQTGHHPCGRET
WGHSMVISPWGEVIANLGAEVQSKVVEFDLATLDSVRRAMPITQHTRFTHQLIENTH"
misc_feature 450589..451380
/locus_tag="O3Y_01950"
/note="nitrilase; Region: PLN02798"
/db_xref="CDD:215428"
misc_feature 450589..451377
/locus_tag="O3Y_01950"
/note="Nit1, Nit 2, and related proteins, and the
Nit1-like domain of NitFhit (class 10 nitrilases); Region:
nit; cd07572"
/db_xref="CDD:143596"
misc_feature order(450703..450705,450862..450864,450913..450915,
450925..450927,450964..450966,451039..451044,
451048..451053,451114..451116)
/locus_tag="O3Y_01950"
/note="putative active site [active]"
/db_xref="CDD:143596"
misc_feature order(450703..450705,450913..450915,451039..451041)
/locus_tag="O3Y_01950"
/note="catalytic triad [active]"
/db_xref="CDD:143596"
misc_feature order(450916..450921,450982..450990,451042..451044,
451051..451065,451069..451074,451138..451143,
451150..451155,451159..451167,451171..451176,
451264..451266,451354..451359,451366..451371,
451375..451377)
/locus_tag="O3Y_01950"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143596"
gene 451410..452855
/locus_tag="O3Y_01955"
/db_xref="GeneID:11913364"
CDS 451410..452855
/locus_tag="O3Y_01955"
/note="COG0312 Predicted Zn-dependent proteases and their
inactivated homologs"
/codon_start=1
/transl_table=11
/product="TldD protein"
/protein_id="YP_005332266.1"
/db_xref="GI:379740297"
/db_xref="GeneID:11913364"
/translation="MTMNQIETALLAPAGLTEQDIADTLSSIATRQIDYADIYFQSSW
HESLVLEDSIIKDGSFNIDCGVGVRAVSGEKTGFAYSDQIQLEGLKQSAIAARGIAQQ
GQNLTVQAFKRAQHPAFYGAHNPLESWEKQQKTELLKQLDAYIRTKEPLITEVSVSLS
GVHEQILVAATDGTYAGDIRPLVRLSISVLAQKGDRRERGSAGGGGRFGYDYFLQEEA
GQKIAFSFADEAIRQALVNLEAVAAPAGTMPVVLGSGWPGVLLHEAVGHGLEGDFNRK
GSSVFAGKVGKKVTSDLCTIVDDGTLKDLRGSLNVDDEGVSGQYNVLIEKGILKGYIQ
DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLPGEHTPEEIIASVKKGIYAPNFG
GGQVDITSGKFVFSASEAYLIENGKITRPIKGATLIGSGIEAMQQVSMVGNDLALDRG
VGVCGKAGQSVPVGVGQPTLKLDALTVGGTE"
misc_feature 451410..452849
/locus_tag="O3Y_01955"
/note="protease TldD; Provisional; Region: tldD; PRK10735"
/db_xref="CDD:182685"
gene complement(452951..454174)
/locus_tag="O3Y_01960"
/db_xref="GeneID:11913365"
CDS complement(452951..454174)
/locus_tag="O3Y_01960"
/EC_number="3.5.3.6"
/note="COG2235 Arginine deiminase"
/codon_start=1
/transl_table=11
/product="arginine deiminase"
/protein_id="YP_005332267.1"
/db_xref="GI:379740298"
/db_xref="GeneID:11913365"
/translation="MNRLYVGSEVGQLRRVLLNRPERALTHLTPSNCHELLFDDVLAV
EAAGVEHDAFANTLRTQDVEVLLLHDLLEETLAIPEARQWLLNTQISDFRFGPTFARE
LRHALNHLDDHHLTTLLLGGLAFSELHLESDSMLPKMRQPLDFVIEPLPNHLFTRDTS
CWVYGGVSLNPMMKPARQRETNHLRAIYRWHPIFAQHPFIHYFGIDDLHYDNANIEGG
DVLVIGKGAVLIGMSERTSPQGVENLAAALFKHGQASKVIAINLPKHRSCMHLDTVMT
HMDVDTFSVYPEVMRKDLPTWRLTPKGNNGDMRVEQVPSYLHAIEQALGVDYLKIITT
GGNSYEAEREQWNDANNVLTVKPGVVIGYERNVYTNEKYDKAGIKVLTIPGNELGRGR
GGARCMSCPIERDGI"
misc_feature complement(452954..454174)
/locus_tag="O3Y_01960"
/note="arginine deiminase; Provisional; Region: PRK01388"
/db_xref="CDD:234949"
gene 454901..455323
/locus_tag="O3Y_01965"
/db_xref="GeneID:11913366"
CDS 454901..455323
/locus_tag="O3Y_01965"
/note="COG3076 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="RNase E inhibitor protein"
/protein_id="YP_005332268.1"
/db_xref="GI:379740299"
/db_xref="GeneID:11913366"
/translation="MSHQDDYLSVEELIEIQKEETRDIIQALLEDGSDPDALYEIEHH
LFAEDFDKLEKAAVEAFKMGFEVLEAEETEDEDGNKLLCFDATMQSALDAKLIDEQVE
KLVNLAEKFDIIYDGWGTYYEGEDALYSDEDEDEDDEH"
misc_feature 454922..455287
/locus_tag="O3Y_01965"
/note="RNase E inhibitor protein; Provisional; Region:
PRK11191"
/db_xref="CDD:236876"
misc_feature 454949..455260
/locus_tag="O3Y_01965"
/note="Protein of unknown function (DUF1260); Region:
DUF1260; pfam06877"
/db_xref="CDD:219212"
gene 455470..456267
/locus_tag="O3Y_01970"
/db_xref="GeneID:11913367"
CDS 455470..456267
/locus_tag="O3Y_01970"
/note="COG3250 Beta-galactosidase/beta-glucuronidase"
/codon_start=1
/transl_table=11
/product="beta-galactosidase/beta-glucuronidase"
/protein_id="YP_005332269.1"
/db_xref="GI:379740300"
/db_xref="GeneID:11913367"
/translation="MQLSLAGLWQLSPLTDLSIPQDDITFPAPLSAVLPKTLSEDDIA
QQEWHLMHDIEVDDDLLSFAAIDLVIEGIDYHAEVRLNGVALFDCDGSQAIYRKEIRS
LLKPGRNRFEILFLEVDEDGLLDEEESELCFLGEQDVPSYDQRMGIWKAPYLQCIRHL
RLTHVSTEQIWHHSGCELLVNLFFTTYSPGLVSAAVKFDGRTYQVPIDVRSDHASVLF
QVDAPKIYDVRHPRAEDLYLITVQLDGQVKRFRLGLSEAHCVSHFPL"
gene complement(456336..456719)
/locus_tag="O3Y_01975"
/db_xref="GeneID:11913368"
CDS complement(456336..456719)
/locus_tag="O3Y_01975"
/note="COG3205 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332270.1"
/db_xref="GI:379740301"
/db_xref="GeneID:11913368"
/translation="MKKTLSFAAIHFTIAFTVAYVLTGDVIIGSLIAMLEPMVNTVAF
YFHEKAWVKSAALQRFAGDPRIKTASFATIHFTVAFSVAYLLTGSWLVGGVMAMIEPS
INTCAYYFHEKVWQSKHAGHLGCAH"
misc_feature complement(456489..456719)
/locus_tag="O3Y_01975"
/note="Predicted membrane protein [Function unknown];
Region: COG3205"
/db_xref="CDD:225746"
misc_feature complement(456372..456524)
/locus_tag="O3Y_01975"
/note="Predicted membrane protein (DUF2061); Region:
DUF2061; pfam09834"
/db_xref="CDD:150497"
gene complement(456870..457307)
/locus_tag="O3Y_01980"
/db_xref="GeneID:11913369"
CDS complement(456870..457307)
/locus_tag="O3Y_01980"
/note="COG0589 Universal stress protein UspA and related
nucleotide-binding proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332271.1"
/db_xref="GI:379740302"
/db_xref="GeneID:11913369"
/translation="MYKHILVPVDLNEQGFADKAVQLAVWHAKHSNAEIHLLNVLPGI
HMSMVATYFPKDAAAQMKNDVRAQLKAFAEKHIAEEVVYKLHIAEGKPYATILDYAER
LGADLIVMPSHKRSRIDKVMLGSVASKVVENSPINVMVVKPQG"
misc_feature complement(456885..457298)
/locus_tag="O3Y_01980"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature complement(order(456927..456938,456966..456971,
456975..456980,457188..457190,457278..457286))
/locus_tag="O3Y_01980"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene complement(457429..459993)
/locus_tag="O3Y_01985"
/db_xref="GeneID:11913370"
CDS complement(457429..459993)
/locus_tag="O3Y_01985"
/note="COG4666 TRAP-type uncharacterized transport system,
fused permease components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332272.1"
/db_xref="GI:379740303"
/db_xref="GeneID:11913370"
/translation="MTQTTTPSQDVQEMVAQADTGARAPKGLPGRVLWFVPLCWSLFQ
LWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRDRIPLTDWLLALA
GSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPPLMMVAALFLL
YTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVLFGAMLERA
GAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIPLMKRVG
FPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISYIALI
YIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFGDA
ATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLV
WCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVS
GARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILG
MGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAF
AAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITA
MLLFSAATQGWWLTKTKWWEVVALLVLTFTFFRPGFWWDMVYPAQVMYAGTKLEQIVE
QAPVGQPIQMIVAGENLKGEYTSKTVQLPFEDRAVSAQERIASMGLTLLNDKNRMLVE
MVEFGSPAEAAGIDFDWEIRSVVVDSDRPMKEWVFLPAILLTLLLAWNQKRRIKKA"
misc_feature complement(<458779..459978)
/locus_tag="O3Y_01985"
/note="TRAP-type uncharacterized transport system, fused
permease components [General function prediction only];
Region: COG4666"
/db_xref="CDD:227012"
misc_feature complement(457759..>458709)
/locus_tag="O3Y_01985"
/note="TRAP-type uncharacterized transport system, fused
permease components [General function prediction only];
Region: COG4666"
/db_xref="CDD:227012"
misc_feature complement(457432..457983)
/locus_tag="O3Y_01985"
/note="Domain of unknown function (DUF3394); Region:
DUF3394; pfam11874"
/db_xref="CDD:152310"
gene complement(460164..461132)
/locus_tag="O3Y_01990"
/db_xref="GeneID:11913371"
CDS complement(460164..461132)
/locus_tag="O3Y_01990"
/note="COG2358 TRAP-type uncharacterized transport system,
periplasmic component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332273.1"
/db_xref="GI:379740304"
/db_xref="GeneID:11913371"
/translation="MSLPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGG
AICKLVNKDRKDHNIRCSVESTGGSIYNVNTIRSGELDFGIVQSDWQYHGYNGTSEFA
EQGPYKKLRAVFSMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRATMQVVMD
AFGWNNDSFKLAAELKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKLVPAT
GPEIEKIVANNPYYAYSVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAV
FENFDTFTRLHPAFANLKKEDMVTAGNSIPLHPGAVKYYKEAGLIK"
misc_feature complement(460173..461060)
/locus_tag="O3Y_01990"
/note="TRAP-type uncharacterized transport system,
periplasmic component [General function prediction only];
Region: Imp; COG2358"
/db_xref="CDD:225233"
misc_feature complement(460176..461054)
/locus_tag="O3Y_01990"
/note="TRAP transporter solute receptor, TAXI family;
Region: TRAP_TAXI; TIGR02122"
/db_xref="CDD:233736"
gene complement(461456..461926)
/locus_tag="O3Y_01995"
/db_xref="GeneID:11913372"
CDS complement(461456..461926)
/locus_tag="O3Y_01995"
/note="COG1438 Arginine repressor"
/codon_start=1
/transl_table=11
/product="arginine repressor"
/protein_id="YP_005332274.1"
/db_xref="GI:379740305"
/db_xref="GeneID:11913372"
/translation="MRNVDKQDNLVRAFKALLKEERFGSQGDIVEALKNEGFDNINQS
KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTASSSLRELVLDVDYNNALVVIRTGP
GAAQLIARLLDSLGKSEGILGVVAGDDTIFITPTLDVPVKELFHSVCELFEYAG"
misc_feature complement(461459..461926)
/locus_tag="O3Y_01995"
/note="arginine repressor; Provisional; Region: PRK05066"
/db_xref="CDD:179922"
misc_feature complement(461702..461911)
/locus_tag="O3Y_01995"
/note="Arginine repressor, DNA binding domain; Region:
Arg_repressor; pfam01316"
/db_xref="CDD:201725"
misc_feature complement(461474..461677)
/locus_tag="O3Y_01995"
/note="Arginine repressor, C-terminal domain; Region:
Arg_repressor_C; pfam02863"
/db_xref="CDD:202435"
gene 462254..463189
/locus_tag="O3Y_02000"
/db_xref="GeneID:11913373"
CDS 462254..463189
/locus_tag="O3Y_02000"
/EC_number="1.1.1.37"
/note="COG0039 Malate/lactate dehydrogenases"
/codon_start=1
/transl_table=11
/product="malate dehydrogenase"
/protein_id="YP_005332275.1"
/db_xref="GI:379740306"
/db_xref="GeneID:11913373"
/translation="MKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAA
DLSHIPTPVTIKGYAGEDPTPALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALA
EKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAA
LKDKDPGQVRVPVIGGHSGVTILPLLSQVEGVSFTDEEVAALTKRIQNAGTEVVEAKA
GGGSATLSMGQAACRFGLALVKALQGESDVVEYAYVEGEGEYAPFFAQPIKLGKNGVE
ALLDIGKLSAYEQAALDGMLDTLKGDIQIGVEFVK"
misc_feature 462254..463186
/locus_tag="O3Y_02000"
/note="malate dehydrogenase; Provisional; Region:
PRK05086"
/db_xref="CDD:235340"
misc_feature 462254..463183
/locus_tag="O3Y_02000"
/note="Glyoxysomal and mitochondrial malate
dehydrogenases; Region: MDH_glyoxysomal_mitochondrial;
cd01337"
/db_xref="CDD:133422"
misc_feature order(462278..462289,462353..462355,462479..462481,
462485..462490,462521..462523,462533..462535,
462542..462544,462602..462604,462608..462610,
462689..462691,462698..462700,462782..462784,
462920..462922,462932..462934)
/locus_tag="O3Y_02000"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:133422"
misc_feature order(462293..462295,462383..462388,462392..462400,
462707..462712,462719..462721,462878..462880,
462887..462889,462899..462904,462920..462931,
462938..462940)
/locus_tag="O3Y_02000"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:133422"
misc_feature order(462494..462496,462512..462514,462608..462610,
462710..462712,462782..462784,462881..462883)
/locus_tag="O3Y_02000"
/note="Substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133422"
gene 463663..465069
/locus_tag="O3Y_02005"
/db_xref="GeneID:11913374"
CDS 463663..465069
/locus_tag="O3Y_02005"
/note="COG0531 Amino acid transporters"
/codon_start=1
/transl_table=11
/product="arginine/ornithine antiporter"
/protein_id="YP_005332276.1"
/db_xref="GI:379740307"
/db_xref="GeneID:11913374"
/translation="MDKKLGLGSLTALVIGSMIGAGVFSLPQNMAAVASPLAVMIGWS
ITGIGMIFLALSFQYLAVNKPHVNSGVFGFAREGFGDFAGFCSAWGYWFSAMVANVSY
LVIVFSTLGLLFDTPDQIIFGSGNTWWSIGGASLLLWAVHSLVLRGVQTAALINLITT
MTKMVPLLLFIVSAIAAFNWSTFSLDFAGLHHISGADLLGQVKATMLITVWVFVGIEG
AVVVSSRARQRKDIGRATILGLLTALSIYVLVTLLSMGVIQVNQLAQYPNPSMAQVLT
TIIGPWGKYIIAVGLLISVCGAFLSWTVLASEAPFLAAKDKMFPRHFAKQNQAGSPVN
ALFLTTLCIQVSLILVRYTSSTYDSLLIFASEMILVPYFLVGAFTLKLALEQRDRGKL
LLIGFGATAYGLWLLYASGLHYLMLSTLLYVPGFAFYLKAKREQGVKAFCGREMVGAS
TLLLFAVGAAGMLWQGAW"
misc_feature 463669..465063
/locus_tag="O3Y_02005"
/note="arginine-ornithine antiporter; Region:
arg_ornith_anti; TIGR03810"
/db_xref="CDD:163522"
misc_feature 463690..>464487
/locus_tag="O3Y_02005"
/note="Spore germination protein; Region: Spore_permease;
cl17796"
/db_xref="CDD:248350"
gene complement(465218..466189)
/locus_tag="O3Y_02010"
/db_xref="GeneID:11913375"
CDS complement(465218..466189)
/locus_tag="O3Y_02010"
/note="COG0142 Geranylgeranyl pyrophosphate synthase"
/codon_start=1
/transl_table=11
/product="octaprenyl-diphosphate synthase"
/protein_id="YP_005332277.1"
/db_xref="GI:379740308"
/db_xref="GeneID:11913375"
/translation="MDFKAIQALTANDMAKVNETIHAQLNSDVSLINQLGFYIISGGG
KRLRPLLAVLSAKALGYQGSHHTTAAAFIEFIHTATLLHDDVVDESDLRRGKATANAA
FGNAASVLVGDFIYTRSFQMMTELGSMKILKLMSDAVNVIAEGEVQQLMNCNDPDTTE
ASYMQVIYSKTARLFEAATQIGAILCDASPEVELAMQNYGKYLGTAFQLIDDVMDYTS
DGDEMGKNVGDDLAEGKPTLPLLYAMQHGNPEQAAMIREAIEKANGMSRLNEILAAME
QTGSLQYTIEKALHEADKAIAELAILPESEYKQALITLAHMAVNRSK"
misc_feature complement(465221..466180)
/locus_tag="O3Y_02010"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:223220"
misc_feature complement(465227..466111)
/locus_tag="O3Y_02010"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(465485..465487,465500..465502,
465515..465517,465545..465547,465554..465559,
465668..465670,465677..465682,465743..465745,
465752..465754,465908..465913,465926..465931,
465935..465943,465947..465955,465962..465964))
/locus_tag="O3Y_02010"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(465926..465955)
/locus_tag="O3Y_02010"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(465485..465487,465500..465502,
465515..465517,465545..465547,465554..465559,
465680..465682,465743..465745,465908..465913,
465926..465928,465935..465940))
/locus_tag="O3Y_02010"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(465554..465559,465680..465682,
465908..465913,465926..465928,465935..465940))
/locus_tag="O3Y_02010"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(465680..465682,465743..465745,
465908..465913,465926..465928,465935..465940))
/locus_tag="O3Y_02010"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(465479..465493,465500..465517,
465533..465538,465878..465922))
/locus_tag="O3Y_02010"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(465485..465487,465500..465502,
465515..465517,465545..465547,465554..465559))
/locus_tag="O3Y_02010"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene 466460..466771
/gene="rplU"
/locus_tag="O3Y_02015"
/db_xref="GeneID:11913376"
CDS 466460..466771
/gene="rplU"
/locus_tag="O3Y_02015"
/note="COG0261 Ribosomal protein L21"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L21"
/protein_id="YP_005332278.1"
/db_xref="GI:379740309"
/db_xref="GeneID:11913376"
/translation="MYAVFQSGGKQHRVSEGQTLRLEKLDVETGATVEFDKVLLVANG
EDIKVGAPLVEGGKVVAEVVQHGRGDKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIN
A"
misc_feature 466460..>466768
/gene="rplU"
/locus_tag="O3Y_02015"
/note="50S ribosomal protein L21/unknown domain fusion
protein; Provisional; Region: PRK12278"
/db_xref="CDD:237034"
misc_feature 466460..466768
/gene="rplU"
/locus_tag="O3Y_02015"
/note="50S ribosomal protein L21; Validated; Region: rplU;
PRK05573"
/db_xref="CDD:235510"
gene 466792..467052
/gene="rpmA"
/locus_tag="O3Y_02020"
/db_xref="GeneID:11913377"
CDS 466792..467052
/gene="rpmA"
/locus_tag="O3Y_02020"
/note="COG0211 Ribosomal protein L27"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L27"
/protein_id="YP_005332279.1"
/db_xref="GI:379740310"
/db_xref="GeneID:11913377"
/translation="MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTK
FHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE"
misc_feature 466792..467040
/gene="rpmA"
/locus_tag="O3Y_02020"
/note="50S ribosomal protein L27; Validated; Region: rpmA;
PRK05435"
/db_xref="CDD:235464"
gene 467275..468447
/gene="obgE"
/locus_tag="O3Y_02025"
/db_xref="GeneID:11913378"
CDS 467275..468447
/gene="obgE"
/locus_tag="O3Y_02025"
/note="COG0536 Predicted GTPase"
/codon_start=1
/transl_table=11
/product="GTPase CgtA"
/protein_id="YP_005332280.1"
/db_xref="GI:379740311"
/db_xref="GeneID:11913378"
/translation="MKFVDEAVIKVQAGDGGNGVVSFWREKFVTNGGPDGGDGGDGGD
VYMVADENLNTLIDYRFQRFYEAERGKNGGGGNCTGKSGKDKELRVPVGTRAVDIHTN
EIIGEVAEHGKKVMIAKGGWHGLGNARFKSSVNRSPRQKTLGTKGELRDIRLELLLLA
DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVSVLPEKSFVVADIPGLI
EGAAEGAGLGIRFLKHLERCRVLLHMIDIMPADQSDPAHNALTIIDELEQYSEKLAKK
PRWLVFNKVDLMSEEEADEIIQNIIDALAWEGDYFKISAANRQGTKELCMKLAEFMDT
LPREAEEKTEAEKVDFTWDYNHKDGLAGREVITEDDDDWDDWDDEEDDGHVIYVRD"
misc_feature 467275..468441
/gene="obgE"
/locus_tag="O3Y_02025"
/note="GTPase CgtA; Reviewed; Region: obgE; PRK12298"
/db_xref="CDD:237047"
misc_feature 467281..467715
/gene="obgE"
/locus_tag="O3Y_02025"
/note="GTP1/OBG; Region: GTP1_OBG; pfam01018"
/db_xref="CDD:110047"
misc_feature 467752..468267
/gene="obgE"
/locus_tag="O3Y_02025"
/note="Obg GTPase; Region: Obg; cd01898"
/db_xref="CDD:206685"
misc_feature 467770..467793
/gene="obgE"
/locus_tag="O3Y_02025"
/note="G1 box; other site"
/db_xref="CDD:206685"
misc_feature order(467779..467796,468121..468126,468130..468132,
468214..468219)
/gene="obgE"
/locus_tag="O3Y_02025"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206685"
misc_feature 467815..467862
/gene="obgE"
/locus_tag="O3Y_02025"
/note="Switch I region; other site"
/db_xref="CDD:206685"
misc_feature 467851..467853
/gene="obgE"
/locus_tag="O3Y_02025"
/note="G2 box; other site"
/db_xref="CDD:206685"
misc_feature 467911..467922
/gene="obgE"
/locus_tag="O3Y_02025"
/note="G3 box; other site"
/db_xref="CDD:206685"
misc_feature order(467920..467943,467950..467988)
/gene="obgE"
/locus_tag="O3Y_02025"
/note="Switch II region; other site"
/db_xref="CDD:206685"
misc_feature 468121..468132
/gene="obgE"
/locus_tag="O3Y_02025"
/note="G4 box; other site"
/db_xref="CDD:206685"
misc_feature 468214..468222
/gene="obgE"
/locus_tag="O3Y_02025"
/note="G5 box; other site"
/db_xref="CDD:206685"
gene 468569..469330
/locus_tag="O3Y_02030"
/db_xref="GeneID:11913379"
CDS 468569..469330
/locus_tag="O3Y_02030"
/note="COG2966 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332281.1"
/db_xref="GI:379740312"
/db_xref="GeneID:11913379"
/translation="MESKQRAVSRLIAQAGQMLLAHGAESTLVGDIMRRMGLASGMSE
VEVSLSASSLVVTTVYKEHCITTARRSPDRGINMRVVTQIQRICIMMEKGILDHSLAQ
RKLNHISPERYNRWLVVVMIGLSCAAFSRLAGGDWMVFLITLIASSVGMIVRQEIGHR
QFNPLINFAATAFVTSVISAQAVIYQLGNKPTIVMASSVLMLVPGFPLINAVADMLKG
YINMGIARFVMASLLTLATALGIVAAMSITGIWGW"
misc_feature 468572..469288
/locus_tag="O3Y_02030"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2966"
/db_xref="CDD:225514"
misc_feature 468611..469183
/locus_tag="O3Y_02030"
/note="Protein of unknown function (DUF1212); Region:
DUF1212; pfam06738"
/db_xref="CDD:219154"
gene 469318..469803
/locus_tag="O3Y_02035"
/db_xref="GeneID:11913380"
CDS 469318..469803
/locus_tag="O3Y_02035"
/note="COG3610 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005332282.1"
/db_xref="GI:379740313"
/db_xref="GeneID:11913380"
/translation="MGVVMLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCAL
GGALGHGSRYLMMHFGVPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVP
GVFAFKAMIALVEINHVGFSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPI
I"
misc_feature 469330..469794
/locus_tag="O3Y_02035"
/note="Protein of unknown function (DUF1212); Region:
DUF1212; cl01118"
/db_xref="CDD:207314"
gene 469816..470313
/locus_tag="O3Y_02040"
/db_xref="GeneID:11913381"
CDS 469816..470313
/locus_tag="O3Y_02040"
/note="COG0262 Dihydrofolate reductase"
/codon_start=1
/transl_table=11
/product="dihydrofolate reductase"
/protein_id="YP_005332283.1"
/db_xref="GI:379740314"
/db_xref="GeneID:11913381"
/translation="MMISMIAAMADQRIIGKDNQMPWHLPADFAWFKRCTLGKPVVMG
RKTYQSIGRPLPGRHNIVISRDASLQIEGVDVVTSIEAALAKAGEVDEVMIIGGGSLY
AACLPMAHKLYITEIHAKLDGDTQFPEWGSDWLERSREHYPADEKNAYGMDFVIFERQ
YPLPT"
misc_feature 469819..470292
/locus_tag="O3Y_02040"
/note="Dihydrofolate reductase [Coenzyme metabolism];
Region: FolA; COG0262"
/db_xref="CDD:223340"
misc_feature 469822..470289
/locus_tag="O3Y_02040"
/note="Dihydrofolate reductase (DHFR). Reduces
7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
as a cofactor. This is an essential step in the
biosynthesis of deoxythymidine phosphate since
5,6,7,8-tetrahydrofolate is required to regenerate 5;
Region: DHFR; cd00209"
/db_xref="CDD:238127"
misc_feature order(469831..469833,469882..469884,469897..469899,
469987..469989,470101..470103,470119..470121,
470158..470160)
/locus_tag="O3Y_02040"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:238127"
misc_feature order(469837..469839,469858..469860,469948..469956,
470008..470010,470104..470115)
/locus_tag="O3Y_02040"
/note="NADP+ binding site [chemical binding]; other site"
/db_xref="CDD:238127"
gene complement(470462..471271)
/gene="apaH"
/locus_tag="O3Y_02045"
/db_xref="GeneID:11913382"
CDS complement(470462..471271)
/gene="apaH"
/locus_tag="O3Y_02045"
/EC_number="3.6.1.41"
/note="COG0639 Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases"
/codon_start=1
/transl_table=11
/product="diadenosine tetraphosphatase"
/protein_id="YP_005332284.1"
/db_xref="GI:379740315"
/db_xref="GeneID:11913382"
/translation="MANYIVGDIQGCFDELQQLLKQAEFNSQLDTLWFAGDLVARGPK
SLETLRFVYQLGDAARVVLGNHDLHLLSVALGHHSAKRRDQTQAVLDAPDAAPLLDWL
RQQPLLAEHQEFVLCHAGISPQWDLATARQAAQEVESVLRSPEWSTLIEQMYSDQPDA
WHPTLQGIDRLRYIVNAFTRMRFCFPDGRLDMQCKLPPKEVTDGSLLPWFQLPQRIAL
EKTVIFGHWAALEGYVSETVIGLDTGCVWGGTLTMLRWEDKHYFSQAALPA"
misc_feature complement(470465..471271)
/gene="apaH"
/locus_tag="O3Y_02045"
/note="diadenosine tetraphosphatase; Reviewed; Region:
apaH; PRK00166"
/db_xref="CDD:234673"
misc_feature complement(470501..471265)
/gene="apaH"
/locus_tag="O3Y_02045"
/note="Escherichia coli ApaH and related proteins,
metallophosphatase domain; Region: MPP_ApaH; cd07422"
/db_xref="CDD:163665"
misc_feature complement(order(470531..470533,470546..470548,
470594..470596,470918..470920,471074..471079,
471149..471154,471161..471163,471242..471244,
471248..471250))
/gene="apaH"
/locus_tag="O3Y_02045"
/note="active site"
/db_xref="CDD:163665"
misc_feature complement(order(470594..470596,470918..470920,
471077..471079,471161..471163,471242..471244,
471248..471250))
/gene="apaH"
/locus_tag="O3Y_02045"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163665"
gene complement(471282..471662)
/gene="apaG"
/locus_tag="O3Y_02050"
/db_xref="GeneID:11913383"
CDS complement(471282..471662)
/gene="apaG"
/locus_tag="O3Y_02050"
/note="COG2967 Uncharacterized protein affecting Mg2+/Co2+
transport"
/codon_start=1
/transl_table=11
/product="CO2+/MG2+ efflux protein ApaG"
/protein_id="YP_005332285.1"
/db_xref="GI:379740316"
/db_xref="GeneID:11913383"
/translation="MDVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTV
QLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLM
IDEQGESFTVEIEPFRLAVPHVLN"
misc_feature complement(471285..471662)
/gene="apaG"
/locus_tag="O3Y_02050"
/note="CO2+/MG2+ efflux protein ApaG; Reviewed; Region:
apaG; PRK05461"
/db_xref="CDD:180098"
gene complement(471734..472549)
/gene="ksgA"
/locus_tag="O3Y_02055"
/db_xref="GeneID:11913384"
CDS complement(471734..472549)
/gene="ksgA"
/locus_tag="O3Y_02055"
/EC_number="2.1.1.-"
/note="COG0030 Dimethyladenosine transferase (rRNA
methylation)"
/codon_start=1
/transl_table=11
/product="KsgA/Dim1 family 16S ribosomal RNA
methyltransferase"
/protein_id="YP_005332286.1"
/db_xref="GI:379740317"
/db_xref="GeneID:11913384"
/translation="MRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEI
GPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVK
PNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLT
VMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFN
QRRKTVRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWLDATHKTHA"
misc_feature complement(471749..472549)
/gene="ksgA"
/locus_tag="O3Y_02055"
/note="16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed; Region: ksgA; PRK00274"
/db_xref="CDD:234708"
misc_feature complement(471746..472522)
/gene="ksgA"
/locus_tag="O3Y_02055"
/note="Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis]; Region:
KsgA; COG0030"
/db_xref="CDD:223109"
gene complement(472563..473555)
/gene="pdxA"
/locus_tag="O3Y_02060"
/db_xref="GeneID:11913385"
CDS complement(472563..473555)
/gene="pdxA"
/locus_tag="O3Y_02060"
/EC_number="1.1.1.262"
/note="COG1995 Pyridoxal phosphate biosynthesis protein"
/codon_start=1
/transl_table=11
/product="4-hydroxythreonine-4-phosphate dehydrogenase"
/protein_id="YP_005332287.1"
/db_xref="GI:379740318"
/db_xref="GeneID:11913385"
/translation="MSSKRIIVTAGEPAGIGPDLVLALSAQDWPHQLVVCADKALLAQ
RATQLGIQVKLLDYQRDNPVQAQQAGTLLVEHIPLAEPVVAGQLNPANGHYVLKTLER
AAKGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSKTPLVVMMLATEGLRTA
LVTTHLPLAEVPQAITCERLEQIVHILHKDLVEKFAIAEPKIYVCGLNPHAGEDGVLG
MDEIETITPTLQRLREQYGMQLVGPLPADTIFSEKYLQQADAVLGMYHDQVLPVLKYK
GFGRSVNITLGLPFIRTSVDHGTALDLAGTGQADAGSFWTALAYAIELVDKKAQ"
misc_feature complement(472566..473555)
/gene="pdxA"
/locus_tag="O3Y_02060"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Reviewed; Region: pdxA; PRK00232"
/db_xref="CDD:234696"
misc_feature complement(472617..473555)
/gene="pdxA"
/locus_tag="O3Y_02060"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Validated; Region: pdxA; PRK03743"
/db_xref="CDD:179641"
gene complement(473545..474840)
/locus_tag="O3Y_02065"
/db_xref="GeneID:11913386"
CDS complement(473545..474840)
/locus_tag="O3Y_02065"
/note="COG0760 Parvulin-like peptidyl-prolyl isomerase"
/codon_start=1
/transl_table=11
/product="survival protein SurA"
/protein_id="YP_005332288.1"
/db_xref="GI:379740319"
/db_xref="GeneID:11913386"
/translation="MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDV
DSALKTIKANAKQNKQPLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAI
KEIAKNNQQTQEQLIASVAQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVD
TLAELLAQETDATVQYKISHIQLRVDDGQDKSTAETLANKLVNDLRNGADFAQMAYAY
SKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLE
TVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAA
QKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALK
NKAYRILFNRKFNEEASAWLQELRASAFVEVLKDEKDEQ"
misc_feature complement(473569..474777)
/locus_tag="O3Y_02065"
/note="peptidyl-prolyl cis-trans isomerase SurA;
Provisional; Region: PRK10770"
/db_xref="CDD:236758"
misc_feature complement(474409..474762)
/locus_tag="O3Y_02065"
/note="SurA N-terminal domain; Region: SurA_N; pfam09312"
/db_xref="CDD:150092"
misc_feature complement(474028..474303)
/locus_tag="O3Y_02065"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
misc_feature complement(473701..473982)
/locus_tag="O3Y_02065"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
gene complement(474893..477244)
/locus_tag="O3Y_02070"
/db_xref="GeneID:11913387"
CDS complement(474893..477244)
/locus_tag="O3Y_02070"
/note="COG1452 Organic solvent tolerance protein OstA"
/codon_start=1
/transl_table=11
/product="LPS assembly outer membrane complex protein
LptD"
/protein_id="YP_005332289.1"
/db_xref="GI:379740320"
/db_xref="GeneID:11913387"
/translation="MSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVN
QPEPTNPGQQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVA
EGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEI
EDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDT
RKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDF
GAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSG
VGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAP
ETMKYLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYY
QQDLDKTTDAKLEESVTRVIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKY
QDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAF
GQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQL
GNSTLEYRVASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSR
KWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIY
ENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN"
misc_feature complement(474908..477244)
/locus_tag="O3Y_02070"
/note="LPS assembly outer membrane complex protein LptD;
Provisional; Region: PRK03761"
/db_xref="CDD:235158"
misc_feature complement(476678..477076)
/locus_tag="O3Y_02070"
/note="OstA-like protein; Region: OstA; pfam03968"
/db_xref="CDD:217820"
misc_feature complement(475193..476356)
/locus_tag="O3Y_02070"
/note="Organic solvent tolerance protein; Region: OstA_C;
pfam04453"
/db_xref="CDD:218093"
gene 477403..478257
/gene="djlA"
/locus_tag="O3Y_02075"
/db_xref="GeneID:11913388"
CDS 477403..478257
/gene="djlA"
/locus_tag="O3Y_02075"
/note="COG1076 DnaJ-domain-containing proteins 1"
/codon_start=1
/transl_table=11
/product="Dna-J like membrane chaperone protein"
/protein_id="YP_005332290.1"
/db_xref="GI:379740321"
/db_xref="GeneID:11913388"
/translation="MHIFGKILGAFFGFLFGGPFGAIFGIFLGHQFDKARRLNQAGFQ
SGTFGAGPSQAERQEEFFKSAFSVMGHVAKAKGQVTKEEIQLATIMMDRMNLTLEQKR
AAQDAFRDGKESDFPLEQVLERVKIATGGRFDLLQFFLELQVSSAFADGDVHPSERQV
LHRIARGLGFSSEQLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPSSRHQLAD
AYEVLGVSESASAQEVKRAYRKLMNEHHPDKLMAKGLPPEMMNVAKEKSQQIQHAYEL
IRKEKGIK"
misc_feature 477592..477909
/gene="djlA"
/locus_tag="O3Y_02075"
/note="N-terminal tellurium resistance protein terB-like
domain of heat shock DnaJ-like proteins; Region:
terB_like_DjlA; cd07316"
/db_xref="CDD:143585"
misc_feature 477625..478236
/gene="djlA"
/locus_tag="O3Y_02075"
/note="DnaJ-domain-containing proteins 1
[Posttranslational modification, protein turnover,
chaperones]; Region: DjlA; COG1076"
/db_xref="CDD:224002"
misc_feature order(477628..477630,477649..477651,477850..477852,
477871..477873)
/gene="djlA"
/locus_tag="O3Y_02075"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:143585"
misc_feature 478054..478227
/gene="djlA"
/locus_tag="O3Y_02075"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(478138..478146,478192..478194,478201..478206,
478213..478218)
/gene="djlA"
/locus_tag="O3Y_02075"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
gene complement(478412..478487)
/locus_tag="O3Y_t13333"
/db_xref="GeneID:11913389"
tRNA complement(478412..478487)
/locus_tag="O3Y_t13333"
/product="tRNA-Asn"
/db_xref="GeneID:11913389"
gene complement(478502..478577)
/locus_tag="O3Y_t13335"
/db_xref="GeneID:11913390"
tRNA complement(478502..478577)
/locus_tag="O3Y_t13335"
/product="tRNA-Thr"
/db_xref="GeneID:11913390"
gene complement(478606..478681)
/locus_tag="O3Y_t13337"
/db_xref="GeneID:11913391"
tRNA complement(478606..478681)
/locus_tag="O3Y_t13337"
/product="tRNA-Asn"
/db_xref="GeneID:11913391"
gene complement(478697..478772)
/locus_tag="O3Y_t13339"
/db_xref="GeneID:11913392"
tRNA complement(478697..478772)
/locus_tag="O3Y_t13339"
/product="tRNA-Thr"
/db_xref="GeneID:11913392"
gene complement(478814..478889)
/locus_tag="O3Y_t13341"
/db_xref="GeneID:11913393"
tRNA complement(478814..478889)
/locus_tag="O3Y_t13341"
/product="tRNA-Phe"
/db_xref="GeneID:11913393"
gene complement(479304..480929)
/locus_tag="O3Y_02080"
/db_xref="GeneID:11913394"
CDS complement(479304..480929)
/locus_tag="O3Y_02080"
/note="COG0840 Methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_005332291.1"
/db_xref="GI:379740322"
/db_xref="GeneID:11913394"
/translation="MKLKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTEL
FNSAYSILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPL
DPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARK
TPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEP
NEVRSAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELA
GAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHT
QKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAI
EAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTS
QSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSK
LSRVVMESHNSTQTLTKLARELEQWAAHFEVTR"
misc_feature complement(480558..480842)
/locus_tag="O3Y_02080"
/note="Cache domain; Region: Cache_2; pfam08269"
/db_xref="CDD:219770"
misc_feature complement(479319..480092)
/locus_tag="O3Y_02080"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:214599"
misc_feature complement(479424..479996)
/locus_tag="O3Y_02080"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(479424..479429,479436..479438,
479445..479450,479457..479459,479466..479471,
479475..479480,479487..479492,479496..479501,
479508..479510,479517..479522,479529..479531,
479538..479543,479550..479555,479559..479564,
479571..479573,479580..479585,479592..479594,
479601..479606,479643..479648,479655..479660,
479664..479669,479676..479681,479688..479690,
479697..479702,479709..479711,479718..479720,
479730..479732,479751..479753,479760..479762,
479772..479774,479781..479786,479793..479795,
479802..479804,479811..479816,479823..479828,
479835..479837,479844..479849,479853..479855,
479865..479870,479874..479879,479886..479888,
479895..479900,479907..479912,479919..479921,
479928..479933,479940..479942,479949..479954,
479958..479963,479970..479972,479979..479984,
479991..479996))
/locus_tag="O3Y_02080"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(479685..479786)
/locus_tag="O3Y_02080"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(481185..481260)
/locus_tag="O3Y_t13343"
/db_xref="GeneID:11913395"
tRNA complement(481185..481260)
/locus_tag="O3Y_t13343"
/product="tRNA-Asn"
/db_xref="GeneID:11913395"
gene complement(481298..481373)
/locus_tag="O3Y_t13345"
/db_xref="GeneID:11913396"
tRNA complement(481298..481373)
/locus_tag="O3Y_t13345"
/product="tRNA-Phe"
/db_xref="GeneID:11913396"
gene complement(481384..481459)
/locus_tag="O3Y_t13347"
/db_xref="GeneID:11913397"
tRNA complement(481384..481459)
/locus_tag="O3Y_t13347"
/product="tRNA-Thr"
/db_xref="GeneID:11913397"
gene complement(481508..481583)
/locus_tag="O3Y_t13349"
/db_xref="GeneID:11913398"
tRNA complement(481508..481583)
/locus_tag="O3Y_t13349"
/product="tRNA-Phe"
/db_xref="GeneID:11913398"
gene complement(481693..482820)
/locus_tag="O3Y_02085"
/db_xref="GeneID:11913399"
CDS complement(481693..482820)
/locus_tag="O3Y_02085"
/note="COG0741 Soluble lytic murein transglycosylase and
related regulatory proteins (some contain LysM/invasin
domains)"
/codon_start=1
/transl_table=11
/product="membrane-bound lytic murein transglycosylase C"
/protein_id="YP_005332292.1"
/db_xref="GI:379740323"
/db_xref="GeneID:11913399"
/translation="MRKLVLCITALLLSGCSREFIEKIYDVDYEPTNRFAKNLAELPG
QFQKDTAALDALINSFSGNIEKRWGRRELKIAGKNNYVKYIDNYLSRSEVNFTEGRII
VETVSPIDPKAHLRNAIITTLLTPDDPAHVDLFSSKDIELKGQPFLYQQVLDQDGQPI
QWSWRANRYADYLIANHLKVKQVDFKKAYYVEIPMVKDQIDIRGYKYASIVRKASRKY
DIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGEPSPEYL
FNPENNIDTGTAYFYILKNRYLKEVRHPTSLEYSMISAYNGGTGGVLSTFSSDRQRAM
RDLNALQPNQVYWALTKKHPNAEARRYLEKVTKFKKEFNAG"
misc_featu 