LOCUS NC_017354 1568826 bp DNA circular BCT 24-DEC-2012
DEFINITION Helicobacter pylori 52 chromosome, complete genome.
ACCESSION NC_017354
VERSION NC_017354.1 GI:384887043
DBLINK Project: 159983
BioProject: PRJNA159983
KEYWORDS .
SOURCE Helicobacter pylori 52
ORGANISM Helicobacter pylori 52
Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1568826)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2012) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 2 (bases 1 to 1568826)
AUTHORS Kim,S., Lee,W.K., Choi,S.H., Kang,S., Park,H.S., Kim,Y.S.,
Lee,S.G., Byun,E.Y., Jeong,J.E., Park,Y.H., Lee,E.J., Kim,J.S.,
Ryu,B.D., Lee,Y.S., Hahn,Y., Yeom,Y.I., Park,S.G., Youn,H.S.,
Ko,G.H., Choi,M.B., Park,C.H., Lim,J.Y., Bae,D.W., Song,J.Y.,
Park,J.U., Kang,H.L., Baik,S.C., Cho,M.J., Yoo,H.S. and Rhee,K.H.
CONSRTM Gyeongsang National University College of Medicine and 21c Frontier
Human Genome Functional Research Project
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) KRIBB, 111 Gwahangno, Yuseong-gu, Daejeon
305-806, Korea
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP001680.
Bacteria available from Deapartment of Microbiology, Gyeongsang
National University College of Medicine, Korea (contact: Kwang Ho
Rhee, khrhee1@gnu.kr <khrhee@gaechuk.gsnu.ac.kr>).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1568826
/organism="Helicobacter pylori 52"
/mol_type="genomic DNA"
/strain="52"
/db_xref="taxon:684950"
gene complement(51..467)
/gene="nusB"
/locus_tag="HPKB_0001"
/db_xref="GeneID:12340065"
CDS complement(51..467)
/gene="nusB"
/locus_tag="HPKB_0001"
/note="Consensus COG by CONSORF: COG0781"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusB"
/protein_id="YP_005761555.1"
/db_xref="GI:384887044"
/db_xref="GeneID:12340065"
/translation="MATRTQARGAVVELLYAFESGNEEIKKIASSILEEKKIKNNQLA
FALSLFNGVLEKINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIII
NECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN"
misc_feature complement(72..458)
/gene="nusB"
/locus_tag="HPKB_0001"
/note="Transcription termination factor NusB (N
protein-Utilization Substance B). NusB plays a key role in
the regulation of ribosomal RNA biosynthesis in eubacteria
by modulating the efficiency of transcriptional
antitermination. NusB along with other Nus...; Region:
Terminator_NusB; cd00619"
/db_xref="CDD:29565"
misc_feature complement(order(444..446,456..458))
/gene="nusB"
/locus_tag="HPKB_0001"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:29565"
gene complement(469..939)
/gene="ribH"
/locus_tag="HPKB_0002"
/db_xref="GeneID:12340067"
CDS complement(469..939)
/gene="ribH"
/locus_tag="HPKB_0002"
/note="Consensus COG by CONSORF: COG0054"
/codon_start=1
/transl_table=11
/product="riboflavin synthase subunit beta"
/protein_id="YP_005761556.1"
/db_xref="GI:384887045"
/db_xref="GeneID:12340067"
/translation="MRIIEGKLQLQGNERVAILTSRFNHIITDRLQEGAIDCFKRHGG
DENLLDIVLVPGAYELPFILERLLGSEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIA
NAMLKYSMPVSFGVLTTDNIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLKG"
misc_feature complement(496..894)
/gene="ribH"
/locus_tag="HPKB_0002"
/note="lumazine synthase (6,7-dimethyl-8-ribityllumazine
synthase, LS), catalyzes the penultimate step in the
biosynthesis of riboflavin (vitamin B2); type-I; Region:
Lumazine_synthase-I; cd09209"
/db_xref="CDD:187742"
misc_feature complement(order(499..504,511..513,523..525,532..534,
556..558,568..570,580..582,586..588,592..594,598..600,
610..615,622..636,640..648,652..660,664..669,673..675,
679..684,688..690,721..723,733..735,739..747,751..759,
763..768,775..786,871..873,889..891))
/gene="ribH"
/locus_tag="HPKB_0002"
/note="homopentamer interface [polypeptide binding]; other
site"
/db_xref="CDD:187742"
misc_feature complement(order(523..525,532..534,556..558,589..603,
670..675,679..681,685..702,763..774,868..873))
/gene="ribH"
/locus_tag="HPKB_0002"
/note="active site"
/db_xref="CDD:187742"
gene complement(949..1779)
/locus_tag="HPKB_0003"
/db_xref="GeneID:12340069"
CDS complement(949..1779)
/locus_tag="HPKB_0003"
/note="Consensus COG by CONSORF: COG2877. Candidate starts
by CONSORF: 1833,1818,1809,1779"
/codon_start=1
/transl_table=11
/product="2-dehydro-3-deoxyphosphooctonate aldolase"
/protein_id="YP_005761557.1"
/db_xref="GI:384887046"
/db_xref="GeneID:12340069"
/translation="MKTSKTKTPKSVLIAGPCVIESLENLRSIATKLQPLANNERLDF
YFKASFDKANRTSLESYRGPGLEKGLEMLQIIKEEFGYKILTDVHESYQASVAAKVAD
ILQIPAFLCRQTDLIVEVSQTNAIINIKKGQFMNPKDMQYSVLKALKTRDKSIQSPTY
ETALKNGVWLCERGSSFGYGNLVVDMRSLKIMREFAPVIFDATHSVQMPGGANGKSSG
DSSFAPILARAAAAVGIDGLFAETHIDPKNALSDGANMLKPDELEYLVTDMLKIQNLF
"
misc_feature complement(955..1746)
/locus_tag="HPKB_0003"
/note="2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional; Region: PRK05198"
/db_xref="CDD:179961"
gene complement(1766..2431)
/locus_tag="HPKB_0004"
/db_xref="GeneID:12340076"
CDS complement(1766..2431)
/locus_tag="HPKB_0004"
/note="Consensus COG by CONSORF: COG0288"
/codon_start=1
/transl_table=11
/product="beta-carbonic anhydrase"
/protein_id="YP_005761558.1"
/db_xref="GI:384887047"
/db_xref="GeneID:12340076"
/translation="MEAFLGALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVV
PNLITGTKPGELYVIRNMGNVIPPKTSHKESLSTMASIEYAIVHVGVQNLIICGHSDC
GACGSIHLINDGITKAKTPYIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNVR
LQLNNLLSYDFIQERVMNNELKIFGWHYIIETGRIYNYNFESHFFEPIEETIKQRKSH
ENF"
misc_feature complement(1838..2356)
/locus_tag="HPKB_0004"
/note="Carbonic anhydrases (CA) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism in which the nucleophilic
attack of a zinc-bound hydroxide ion on carbon dioxide is
followed by the regeneration of an...; Region:
beta_CA_cladeB; cd00884"
/db_xref="CDD:48223"
misc_feature complement(order(1868..1870,2126..2128,2135..2137,
2165..2167,2180..2182,2261..2263,2270..2272,2306..2314,
2318..2320,2339..2341,2345..2347))
/locus_tag="HPKB_0004"
/note="active site clefts [active]"
/db_xref="CDD:48223"
misc_feature complement(order(2126..2128,2135..2137,2312..2314,
2318..2320))
/locus_tag="HPKB_0004"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:48223"
misc_feature complement(order(1847..1849,1853..1855,1859..1864,
1868..1870,2054..2056,2180..2185,2192..2197,2252..2254,
2258..2260,2264..2272,2285..2296,2300..2302,2306..2317))
/locus_tag="HPKB_0004"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48223"
gene 2553..3236
/locus_tag="HPKB_0005"
/db_xref="GeneID:12340078"
CDS 2553..3236
/locus_tag="HPKB_0005"
/note="Consensus COG by CONSORF: COG0284"
/codon_start=1
/transl_table=11
/product="orotidine 5'-phosphate decarboxylase"
/protein_id="YP_005761559.1"
/db_xref="GI:384887048"
/db_xref="GeneID:12340078"
/translation="MQLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFL
DEIRKIDGNFKIFLDLKLYDIPYTMANAALECAKLEVDMLTVHLSSAKSALTILMQRL
NALKKRPLIMGVSALTSFSEEEFLSVYNAPLKTQAIKLSAMGKESGIDGVVCSVFESL
AIKEALGKDFLTLTPGIRLNKNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPRE
VVLELLKDC"
misc_feature 2559..3221
/locus_tag="HPKB_0005"
/note="Orotidine 5'-phosphate decarboxylase (ODCase) is a
dimeric enzyme that decarboxylates orotidine
5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP),
an essential step in the pyrimidine biosynthetic pathway.
In mammals, UMP synthase contains two...; Region:
OMP_decarboxylase_like; cd04725"
/db_xref="CDD:73387"
misc_feature order(2568..2570,2574..2576,2640..2642,2646..2648,
2727..2729,2733..2735,2901..2906,3075..3077,3171..3176)
/locus_tag="HPKB_0005"
/note="active site"
/db_xref="CDD:73387"
misc_feature order(2646..2648,2652..2657,2730..2735,2739..2744,
2751..2756,2763..2768,2811..2819,2850..2852,2901..2903,
2958..2960,3174..3176)
/locus_tag="HPKB_0005"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73387"
gene 3237..4067
/gene="panC"
/locus_tag="HPKB_0006"
/db_xref="GeneID:12340237"
CDS 3237..4067
/gene="panC"
/locus_tag="HPKB_0006"
/note="Consensus COG by CONSORF: COG0414"
/codon_start=1
/transl_table=11
/product="pantoate--beta-alanine ligase"
/protein_id="YP_005761560.1"
/db_xref="GI:384887049"
/db_xref="GeneID:12340237"
/translation="MRVLETIAALREYRKSLKESVGFVPTMGALHKGHQSLIERSLKE
NSHTIVSVFVNPTQFGPNEDFNAYPRPLEKDLALCEGLGVNAVFLPKTNEMYPYEIEQ
RLKLYAPTFLSQSLEGAMRKGHFDGVVQVVLKLFHLVHPTRAYFGKKDAQQLLIIQHL
VKDLLLDIEITPCEIVRDDDNLALSSRNVYLNATQRKQALAIPKTLESIKQAIDKGEK
ACEKLKKLGFEILETLEVDYLEFCNHKLEPLKTIEPANTLVLVAARVGKTRLLDNLWV
"
misc_feature 3237..4064
/gene="panC"
/locus_tag="HPKB_0006"
/note="pantoate--beta-alanine ligase; Region: panC;
TIGR00018"
/db_xref="CDD:161666"
misc_feature 3237..4058
/gene="panC"
/locus_tag="HPKB_0006"
/note="Pantoate-beta-alanine ligase; Region: PanC;
cd00560"
/db_xref="CDD:185673"
misc_feature order(3309..3320,3327..3329,3333..3338,3345..3347,
3399..3401,3408..3410,3438..3440,3618..3620,3627..3632,
3672..3677,3681..3686,3693..3695,3756..3764,3786..3797)
/gene="panC"
/locus_tag="HPKB_0006"
/note="active site"
/db_xref="CDD:185673"
misc_feature order(3309..3317,3327..3329,3336..3338,3345..3347,
3408..3410,3627..3632,3672..3677,3681..3686,3693..3695,
3759..3764,3783..3788)
/gene="panC"
/locus_tag="HPKB_0006"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:185673"
misc_feature order(3309..3311,3315..3317,3399..3401,3408..3410,
3627..3632,3639..3641,3693..3695)
/gene="panC"
/locus_tag="HPKB_0006"
/note="pantoate-binding site; other site"
/db_xref="CDD:185673"
misc_feature 3327..3338
/gene="panC"
/locus_tag="HPKB_0006"
/note="HXXH motif; other site"
/db_xref="CDD:185673"
gene complement(4079..4154)
/gene="trnE"
/locus_tag="HPKB_0007"
/db_xref="GeneID:12340239"
tRNA complement(4079..4154)
/gene="trnE"
/locus_tag="HPKB_0007"
/product="tRNA-Glu"
/db_xref="GeneID:12340239"
gene complement(4218..4294)
/gene="trnD"
/locus_tag="HPKB_0008"
/db_xref="GeneID:12340271"
tRNA complement(4218..4294)
/gene="trnD"
/locus_tag="HPKB_0008"
/product="tRNA-Asp"
/db_xref="GeneID:12340271"
gene complement(4335..4410)
/gene="trnV"
/locus_tag="HPKB_0009"
/db_xref="GeneID:12340063"
tRNA complement(4335..4410)
/gene="trnV"
/locus_tag="HPKB_0009"
/product="tRNA-Val"
/db_xref="GeneID:12340063"
gene complement(4452..4526)
/gene="trnE"
/locus_tag="HPKB_0010"
/db_xref="GeneID:12340431"
tRNA complement(4452..4526)
/gene="trnE"
/locus_tag="HPKB_0010"
/product="tRNA-Glu"
/db_xref="GeneID:12340431"
gene complement(4537..4612)
/gene="trnK"
/locus_tag="HPKB_0011"
/db_xref="GeneID:12340432"
tRNA complement(4537..4612)
/gene="trnK"
/locus_tag="HPKB_0011"
/product="tRNA-Lys"
/db_xref="GeneID:12340432"
gene complement(5287..7434)
/locus_tag="HPKB_0012"
/db_xref="GeneID:12340433"
CDS complement(5287..7434)
/locus_tag="HPKB_0012"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005761561.1"
/db_xref="GI:384887050"
/db_xref="GeneID:12340433"
/translation="MKKTLLLSLSLASSLLNAEDNGFFISAGYQIGEAAQMVKNTGEL
KKLSDTYENLSNLLNNFNNLNQAVTNASSPSQINAAIDNLKANTQGLIGEKTNSPAYQ
AVSLALNAAVGLWNVIGYAIMCGNGNGTEGGPGSVVFNNQPGSYSTSITCNRYEATGP
GHSMSIDEFKKLNEAYQIIQQALKEGNGFPDLGGSGQKVSVTYIYECQQKAEINGGVN
KFCQANGSSSSGSNSNSTTTTKQDGVTITTTYGGNKATVKFDTTNNAQGLLAQAANIM
NVLNTQCPLIRSTNNENAPGGGEPWGIEKSGDACQVFQQEFSAVTNMIKNAQEIVAQA
QSLNTNQNNQNAPQDFNPYTSSDRAFAQNMLNHAQAQAKMLELADQIKTNLSAIPEKF
TKDYLAACKNGGGTLPNEGVTSNTWGAGCAYVEETITALNNSLAHFGTQAEQIKQSEL
LARTILDFRGSLSILNNTYNSITTTASNTPNSPFLKDLISQSTNPNNPGGLQAVYQVN
QSAYSQLLSATQELGHNPFRRFGLISSQTNNGAMNGIGVQIGYKQFFGEKKRWGARYY
GFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNSKISFGVFGGIALAGT
SWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLARNKKKASDHAAQHGMELGV
KIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAY"
misc_feature complement(5290..5799)
/locus_tag="HPKB_0012"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(7727..9367)
/gene="groEL"
/locus_tag="HPKB_0013"
/db_xref="GeneID:12340434"
CDS complement(7727..9367)
/gene="groEL"
/locus_tag="HPKB_0013"
/note="Consensus COG by CONSORF: COG0459"
/codon_start=1
/transl_table=11
/product="chaperonin GroEL"
/protein_id="YP_005761562.1"
/db_xref="GI:384887051"
/db_xref="GeneID:12340434"
/translation="MAKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYG
APSITKDGVSVAKEIELSCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEG
LRNITAGANPIEVKRGMDKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKL
IADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAY
ILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVK
APGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDG
KGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKK
DRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHLDLHDDEKVGYEIIMRAIKAPLAQ
IAINAGYDGGVVVNEVQKHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVS
SLLLTTEATVHEIKEEKATPAMPDMGGMGGMGGMGGMM"
misc_feature complement(7781..9367)
/gene="groEL"
/locus_tag="HPKB_0013"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12849"
/db_xref="CDD:183791"
misc_feature complement(7808..9361)
/gene="groEL"
/locus_tag="HPKB_0013"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:48161"
misc_feature complement(order(7811..7831,7838..7840,8000..8002,
8213..8215,8219..8221,8600..8602,8684..8686,8780..8782,
9143..9145,9152..9154,9164..9166,9188..9190,9194..9196,
9224..9226,9230..9235,9248..9250,9254..9265,9296..9298,
9347..9349,9359..9361))
/gene="groEL"
/locus_tag="HPKB_0013"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:48161"
misc_feature complement(order(7892..7894,7898..7900,8015..8017,
8126..8128,8177..8179,8921..8923,9098..9100,9110..9112,
9272..9280))
/gene="groEL"
/locus_tag="HPKB_0013"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:48161"
misc_feature complement(order(7976..7978,7985..7990,7994..7996,
8021..8023,8075..8077,9044..9046))
/gene="groEL"
/locus_tag="HPKB_0013"
/note="stacking interactions; other site"
/db_xref="CDD:48161"
misc_feature complement(order(8141..8146,8246..8248,8792..8794,
8813..8815,8948..8950))
/gene="groEL"
/locus_tag="HPKB_0013"
/note="hinge regions; other site"
/db_xref="CDD:48161"
gene complement(9392..9748)
/gene="groES"
/locus_tag="HPKB_0014"
/db_xref="GeneID:12340435"
CDS complement(9392..9748)
/gene="groES"
/locus_tag="HPKB_0014"
/note="Consensus COG by CONSORF: COG0234"
/codon_start=1
/transl_table=11
/product="co-chaperonin GroES"
/protein_id="YP_005761563.1"
/db_xref="GI:384887052"
/db_xref="GeneID:12340435"
/translation="MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAVS
HKISEGCKCVKEGDVIAFGKYKGAEIVLDGVEYMVLELEDILGIVGSGSCCHTNSHDH
KHAKEHEACCHDHKKH"
misc_feature complement(9482..9745)
/gene="groES"
/locus_tag="HPKB_0014"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:238197"
misc_feature complement(order(9485..9493,9539..9541,9545..9547,
9560..9562,9590..9592,9638..9643,9722..9724,9731..9733,
9737..9739,9743..9745))
/gene="groES"
/locus_tag="HPKB_0014"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:238197"
misc_feature complement(9656..9697)
/gene="groES"
/locus_tag="HPKB_0014"
/note="mobile loop; other site"
/db_xref="CDD:238197"
misc_feature complement(9614..9616)
/gene="groES"
/locus_tag="HPKB_0014"
/note="roof hairpin; other site"
/db_xref="CDD:238197"
gene 10023..11549
/gene="dnaG"
/locus_tag="HPKB_0015"
/db_xref="GeneID:12340436"
CDS 10023..11549
/gene="dnaG"
/locus_tag="HPKB_0015"
/note="Consensus COG by CONSORF: COG0358"
/codon_start=1
/transl_table=11
/product="DNA primase"
/protein_id="YP_005761564.1"
/db_xref="GI:384887053"
/db_xref="GeneID:12340436"
/translation="MILKSSIDRLLQTIDIVEVISSYVDLRKSGSSYMACCPFHEERS
ASFSVNQVKGFYHCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEYDKGAYY
DHKEDYHLLEMVSSLYQEELFNAPFFLNYLQKRGLSLESIRAFKLGLCTNRIDYGIEN
KGLNKDKLIELGVLGKSNKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTLKEKAAKYI
NSPQNKLFDKSSLLYGYHLAKEHIYKQKQVIVTEGYLDVILLHQAGFKNAIATLGTAL
TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRGGVILFENNLDPADMI
ANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNFSLLLQS
EYKPLIATLLQAPLHVLGIRERASFQPFYPKTEKPNHVQKLVNAPSTLSLEFLEKLVI
RYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLDDPKLVALLLDANLPLKKRGF
"
misc_feature 10023..11228
/gene="dnaG"
/locus_tag="HPKB_0015"
/note="DNA primase, catalytic core; Region: dnaG;
TIGR01391"
/db_xref="CDD:162334"
misc_feature 10026..10319
/gene="dnaG"
/locus_tag="HPKB_0015"
/note="CHC2 zinc finger; Region: zf-CHC2; pfam01807"
/db_xref="CDD:110780"
misc_feature 10374..10739
/gene="dnaG"
/locus_tag="HPKB_0015"
/note="DNA primase catalytic core, N-terminal domain;
Region: Toprim_N; pfam08275"
/db_xref="CDD:203896"
misc_feature 10758..10994
/gene="dnaG"
/locus_tag="HPKB_0015"
/note="TOPRIM_DnaG_primases: The topoisomerase-primase
(TORPIM) nucleotidyl transferase/hydrolase domain found in
the active site regions of proteins similar to Escherichia
coli DnaG. Primases synthesize RNA primers for the
initiation of DNA replication. DnaG...; Region:
TOPRIM_DnaG_primases; cd03364"
/db_xref="CDD:173784"
misc_feature order(10776..10781,10788..10790,10908..10910,10914..10916,
10920..10922)
/gene="dnaG"
/locus_tag="HPKB_0015"
/note="active site"
/db_xref="CDD:173784"
misc_feature order(10776..10778,10908..10910)
/gene="dnaG"
/locus_tag="HPKB_0015"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173784"
misc_feature order(10782..10787,10803..10808,10836..10838)
/gene="dnaG"
/locus_tag="HPKB_0015"
/note="interdomain interaction site; other site"
/db_xref="CDD:173784"
gene 11700..12752
/locus_tag="HPKB_0016"
/db_xref="GeneID:12340437"
CDS 11700..12752
/locus_tag="HPKB_0016"
/note="Consensus COG by CONSORF: COG0482"
/codon_start=1
/transl_table=11
/product="argininosuccinate synthase"
/protein_id="YP_005761565.1"
/db_xref="GI:384887054"
/db_xref="GeneID:12340437"
/translation="MKKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKD
KREYFENATAQIGAKLLVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYK
MLELNADFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDPILDRTQASAEKPQ
FLDELLLRPMSAKLLEPTFMEKKGWVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPG
GGCLLTDIQVSNKIKNLKEYREMVFEDSVIVKNGRYFVLPNNARLVVARNEEENHKLD
IEHPLMDKIELLGCKGPLSLVDKNASKEDKELAGRIALGYAKTLKNQAYLIQIGNEKR
ELYPLDKESAREYLFA"
misc_feature 11700..12728
/locus_tag="HPKB_0016"
/note="Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis]; Region:
TrmU; COG0482"
/db_xref="CDD:30830"
misc_feature 11712..12332
/locus_tag="HPKB_0016"
/note="ThiI is required for thiazole synthesis in the
thiamine biosynthesis pathway. It belongs to the Adenosine
Nucleotide Hydrolysis suoerfamily and predicted to bind to
Adenosine nucleotide; Region: ThiI; cd01712"
/db_xref="CDD:30167"
misc_feature order(11724..11732,11736..11747,11802..11804,11808..11810)
/locus_tag="HPKB_0016"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30167"
gene 12842..13669
/locus_tag="HPKB_0017"
/db_xref="GeneID:12340438"
CDS 12842..13669
/locus_tag="HPKB_0017"
/note="Consensus COG by CONSORF: COG0059"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761566.1"
/db_xref="GI:384887055"
/db_xref="GeneID:12340438"
/translation="MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFY
IPYENCYLGRCCIDNHKIILPSDPNLRVQAEPEIALECDVKYDEKHFVTKLVPNFFMA
FNDASVRNLDATKLSQKKNFSPASKGIGQKLPIDRFAYGGVCNNFSIASFLKYNNVWR
IYGENSKLLKYEFFYQKLLDWIKDRLNYQQDGDSLEALRPFLERHNFPTKMIFAIGAT
PYMPFAQEHFLQKGDEVVIVAYNHLQYSFEKIQNLLEEDALQTKEHANLSYVYQIVE"
gene 13814..14095
/locus_tag="HPKB_0018"
/db_xref="GeneID:12340439"
CDS 13814..14095
/locus_tag="HPKB_0018"
/note="Candidate starts by CONSORF: 13811,13814"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761567.1"
/db_xref="GI:384887056"
/db_xref="GeneID:12340439"
/translation="MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGIL
MVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANWFMGIF"
misc_feature <13886..14080
/locus_tag="HPKB_0018"
/note="TrbC/VIRB2 family; Region: TrbC; cl01583"
/db_xref="CDD:242590"
gene 14095..14358
/locus_tag="HPKB_0019"
/db_xref="GeneID:12340440"
CDS 14095..14358
/locus_tag="HPKB_0019"
/note="Candidate starts by CONSORF: 14074,14095"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761568.1"
/db_xref="GI:384887057"
/db_xref="GeneID:12340440"
/translation="MIILSASVRNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDL
LSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKTKTKCYRA"
gene 14361..16724
/locus_tag="HPKB_0020"
/db_xref="GeneID:12340441"
CDS 14361..16724
/locus_tag="HPKB_0020"
/note="Consensus COG by CONSORF: COG3451"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761569.1"
/db_xref="GI:384887058"
/db_xref="GeneID:12340441"
/translation="MLEKLLSAVKQKVSNYFLGVLPKSYSMSEENNILGLYDEHFLLT
KNENLVGILRLEGVSYTHLSTEQLQDLFTERQMALDSLEKVVARLVVKRRKIDHQQNI
QSDSKYLQAILNQFENKEVYENQYFLVLESAHSLQGVLEHKKKSLMHANRENFKDILS
YKAHFLQETLKSLEIQLKNYAPKLLNSKEVLNFYAEYINGFDLPLKPLVGGYLSDSYI
ASSITFEKDYFIQEGFNQKTYNRLIGIKAYESERITSIAIGALLYQETPLDIIFSIEP
MSVNKTLSFLKERAKFSMSNLVKNELLEYQELVKTKRLSMQKFALNILIKAPSLEDLD
AQTSLVLGLLFKENLVGVIETFGLKGGYFSFFPERIHLNHRLRFLTSKALACLMVFER
QNLGFKANSWGNSPLSVFKNLDYSPFLFNFHNQEVSHNNAKEIARANGHTLIIGATGS
GKSTLISFLMMSALKYQNMRLLAFDRMQGLYSFTKFFKGHYHDGKSFSINPFCLEPNL
QNLEFLQSFFLSMFDLAPSRDKEALEDMNAILSAIKSLYETLYPKAFSLLDFKETLKR
TSSNQLGLSLEPYLNNPLFNALNDAFNSNAFLNVINLDAITQNPKDLGLLAYYLFYKI
LEESRKNDSGFLVFLDEFKSYVENDLLNAKINALITQARKANGVVVLALQDIYQLSGV
KNAHSFLSNMGTLILYPQKNARELKHHFNVPLSETEISFLENTPLYARQVLVKNLGNG
SSNMIDVSLEGLGRYLKIFNSDSSHVNKVKALQKDYPTEWREKLLKS"
misc_feature 14421..16715
/locus_tag="HPKB_0020"
/note="type IV secretion/conjugal transfer ATPase, VirB4
family; Region: VirB4_CagE; TIGR00929"
/db_xref="CDD:200059"
misc_feature 14883..15485
/locus_tag="HPKB_0020"
/note="CagE, TrbE, VirB family, component of type IV
transporter system; Region: CagE_TrbE_VirB; pfam03135"
/db_xref="CDD:111973"
misc_feature 15681..>15866
/locus_tag="HPKB_0020"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature order(15696..15701,15711..15719)
/locus_tag="HPKB_0020"
/note="Walker A motif; other site"
/db_xref="CDD:29986"
misc_feature order(15699..15701,15711..15719,15777..15779,15783..15788)
/locus_tag="HPKB_0020"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29986"
misc_feature 16266..>16481
/locus_tag="HPKB_0020"
/note="TraM recognition site of TraD and TraG; Region:
TraG-D_C; pfam12696"
/db_xref="CDD:205025"
gene 16977..18386
/locus_tag="HPKB_0021"
/db_xref="GeneID:12340442"
CDS 16977..18386
/locus_tag="HPKB_0021"
/note="Consensus COG by CONSORF: COG3014. Candidate starts
by CONSORF: 16956,16977"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761570.1"
/db_xref="GI:384887059"
/db_xref="GeneID:12340442"
/translation="MKIFVLLMSVILGVSLTGCIGYRMDLEHFNTLYYEESPKKAYEY
SKQFTKKKKNALLWDLQNGLSALYARDYKTSLGVLEQAEQRFDKTQSAFTRGAGYVGA
TMINDNVRAYGGNIYESVLINYYKAIDYMLLNDSANARVQFNRANERQRRAKEFYYEE
VQKAIKEIDSSKKHNINMERSRVEVSEILNNTYSNLNKYEAYQGLLNPAVSYLSGLFY
ALNGDKNKGLGYLNEAYGISQSPFVAKDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKI
DVPIFMIDSIYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQ
LPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYL
MRIKNKAFENYEVQADSTDAFSFSLKPCKRSLENPKVIDARELLSGFVTAPQIFCSNR
HNILYVRSFKNGFVLNRLK"
misc_feature 16977..18326
/locus_tag="HPKB_0021"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3014"
/db_xref="CDD:32831"
gene 18487..19452
/locus_tag="HPKB_0022"
/db_xref="GeneID:12340443"
CDS 18487..19452
/locus_tag="HPKB_0022"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_005761571.1"
/db_xref="GI:384887060"
/db_xref="GeneID:12340443"
/translation="MADSLAGIDQVTSLHKNNELQLLCFRLGKNKDLYAVNVFKIREV
VKYHGNLTIISHENNSLVEGLIIIRELTIPLIDMKKWFYYDSQNKNKDLRPYRIEKEK
GEDDIVMICEFSRWTIGVRIYEADRILSKKWTEMEQSAGLGGSAGNNKLVSRTRYFDG
RLVQVVDIEKMLIDVFPWIEDEKHSDLETLSKIHSNQCVLLADDSPSVLKTMQTILDK
LSVKHIDFINGKTLLEYLFNPTTDVSSIGLIITDLEMPEASGFEVIKQVKNNPLTSKI
PIVVNSSMSGSSNEDMARSLKADDFISKSNPKDIQRVVKQFLESA"
misc_feature 18541..18999
/locus_tag="HPKB_0022"
/note="CheW-like domain. CheW proteins are part of the
chemotaxis signalling mechanism in bacteria. CheW
interacts with the methyl accepting chemotaxis proteins
(MCPs) and relays signals to CheY, which affects flageller
rotation. This family includes CheW and...; Region:
CheW_like; cd00588"
/db_xref="CDD:29680"
misc_feature 19081..19431
/locus_tag="HPKB_0022"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 19084..19440
/locus_tag="HPKB_0022"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(19093..19098,19240..19242,19264..19266,19330..19332,
19387..19389,19396..19401)
/locus_tag="HPKB_0022"
/note="active site"
/db_xref="CDD:29071"
misc_feature 19240..19242
/locus_tag="HPKB_0022"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(19249..19254,19258..19266)
/locus_tag="HPKB_0022"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 19396..19401
/locus_tag="HPKB_0022"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 19449..20666
/gene="nspC"
/locus_tag="HPKB_0023"
/db_xref="GeneID:12340444"
CDS 19449..20666
/gene="nspC"
/locus_tag="HPKB_0023"
/note="Consensus COG by CONSORF: COG0019"
/codon_start=1
/transl_table=11
/product="carboxynorspermidine decarboxylase (nspC)"
/protein_id="YP_005761572.1"
/db_xref="GI:384887061"
/db_xref="GeneID:12340444"
/translation="MKKYSAIPTPCYVLESERLEKNAKILEIVRQQSGAKVLLALKGY
AFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESQKEICVYSPAFKEAEMSAILPL
ATSIIFNSFYQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPVIYNPCSKV
SRLGITPSGFEKGVKEHGLEGVSGLHFHTHCEQNADALCRTLEHVERHFKPYLENMAW
VNFGGGHHITRSDYDVNLLIQTIKDFKERYHNIEVVLEPGEAIGWQCGFLIASVIDIV
KNDQEIAILDASFSAHMPDCLEMPYRPSILKISVENDEELIEIEKGENQGAFSYFLGG
PTCLAGDFMGSFSFDVPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLARLDQQGFKI
LKNFSYEDYKNRN"
misc_feature 19467..20663
/gene="nspC"
/locus_tag="HPKB_0023"
/note="carboxynorspermidine decarboxylase; Region: nspC;
TIGR01047"
/db_xref="CDD:188104"
misc_feature 19473..20606
/gene="nspC"
/locus_tag="HPKB_0023"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Carboxynorspermidine Decarboxylase; Region:
PLPDE_III_CANSDC; cd06829"
/db_xref="CDD:143502"
misc_feature order(19473..19475,19572..19574,19635..19640,19644..19649,
19725..19727,19773..19775,19782..19784,19794..19796,
19911..19922,20265..20276,20292..20294,20298..20300,
20304..20306,20313..20315,20448..20450,20454..20462,
20469..20471,20553..20561,20568..20576)
/gene="nspC"
/locus_tag="HPKB_0023"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143502"
misc_feature order(19566..19568,19572..19574,19629..19631,19710..19712,
19869..19871,20010..20012,20019..20021,20115..20120,
20214..20225,20457..20462,20544..20546,20556..20558,
20568..20570)
/gene="nspC"
/locus_tag="HPKB_0023"
/note="active site"
/db_xref="CDD:143502"
misc_feature order(19566..19568,19572..19574,19629..19631,19710..19712,
19869..19871,20010..20012,20019..20021,20115..20120,
20214..20225,20457..20459,20544..20546)
/gene="nspC"
/locus_tag="HPKB_0023"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143502"
misc_feature order(19572..19574,20457..20459)
/gene="nspC"
/locus_tag="HPKB_0023"
/note="catalytic residues [active]"
/db_xref="CDD:143502"
misc_feature order(20019..20021,20223..20225,20457..20462,20544..20546,
20556..20558,20568..20570)
/gene="nspC"
/locus_tag="HPKB_0023"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143502"
gene complement(20676..21248)
/locus_tag="HPKB_0024"
/db_xref="GeneID:12340445"
CDS complement(20676..21248)
/locus_tag="HPKB_0024"
/note="Consensus COG by CONSORF: COG0671"
/codon_start=1
/transl_table=11
/product="lipid A 1-phosphatase"
/protein_id="YP_005761573.1"
/db_xref="GI:384887062"
/db_xref="GeneID:12340445"
/translation="MKRFLFKQKFCESLPKSFSKTLLALSLGLILSGIFAPFPKVPKQ
HSVPLVFHFTEHYARFIPTILSVAIPLIQRDAIGLFQVANASIATTLLTHTTKRALNH
VTINEQRLGERPYGGNFNMPSGHSSMVGLAVVFLMRRYSFKKYWWLLPLIPLTMLARI
YLDMHTIGAVLAGLGVGMLCVSLFTSPKKP"
misc_feature complement(20679..21248)
/locus_tag="HPKB_0024"
/note="lipid A 1-phosphatase; Reviewed; Region: PRK09597"
/db_xref="CDD:181978"
misc_feature complement(20679..>21077)
/locus_tag="HPKB_0024"
/note="Membrane-associated phospholipid phosphatase [Lipid
metabolism]; Region: PgpB; COG0671"
/db_xref="CDD:31015"
misc_feature complement(order(20742..20744,20754..20756,20772..20774,
20874..20882,20922..20924,20958..20960))
/locus_tag="HPKB_0024"
/note="active site"
/db_xref="CDD:48084"
gene complement(21259..22830)
/locus_tag="HPKB_0025"
/db_xref="GeneID:12340446"
CDS complement(21259..22830)
/locus_tag="HPKB_0025"
/note="Consensus COG by CONSORF: COG2194"
/codon_start=1
/transl_table=11
/product="lipid A phosphoethanolamine transferase"
/protein_id="YP_005761574.1"
/db_xref="GI:384887063"
/db_xref="GeneID:12340446"
/translation="MTSLFHLKFLKPLNCLQAGLLYSLIFGVLYHFPLFAYVYKESNQ
VSFIAMIVVVLFCVNGALFLTLGLISIYLMRLSAIVFSLLNSIAFYFISAYGVFLNKS
MMGNVLNTNTHELLGFLSVKLFIFIVVFGVLPGYVIYKIPLKNSSKKVPFLAILALVF
IFIASALMNAKNWLWFDKNAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPN
RSHSFVVLVIGESARKHNYALYGYKKPTTPKLSKRLADNELTLFNATSCATYTTASLE
CILDSSFKNSLNAYDNLPTYLTKAGIKVFWYSANDGEKNVKVTSYLKNYELIQKCPNC
EAIAPYDESLLYNLPDLLKERSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSA
DLSSCSKESLINAYDNTIFYNDYLLDKIISMLKTAKQPTLMIYLSDHGESLGEGAFYL
HGIPKSIAPKEQYEIPFIVYANEPFKEKHSIIQTQTPIHQNVIFHSILGVFLDFKNPS
AVYRPSLDLLKHKKE"
misc_feature complement(21262..22830)
/locus_tag="HPKB_0025"
/note="lipid A phosphoethanolamine transferase; Reviewed;
Region: PRK09598"
/db_xref="CDD:181979"
misc_feature complement(22210..22671)
/locus_tag="HPKB_0025"
/note="Domain of unknown function (DUF1705); Region:
DUF1705; pfam08019"
/db_xref="CDD:149223"
misc_feature complement(21328..22161)
/locus_tag="HPKB_0025"
/note="Sulfatase; Region: Sulfatase; pfam00884"
/db_xref="CDD:201490"
gene complement(23272..25335)
/locus_tag="HPKB_0026"
/db_xref="GeneID:12340447"
CDS complement(23272..25335)
/locus_tag="HPKB_0026"
/codon_start=1
/transl_table=11
/product="outer membrane protein HopD"
/protein_id="YP_005761575.1"
/db_xref="GI:384887064"
/db_xref="GeneID:12340447"
/translation="MKKKFLSLTLGSLLVSTLSAEDNGFFVSAGYQIGESAQMVKNTK
GIQDLSDSYERLNNLLTSYSALNTLIRQSSDPNAINNARTNLNASAKNLINDKTNSPA
YQAVLLALNAAAGLWQVMSYAISPCGPGKDSSKNGGVQTFENTPTNQWGGTTITCGTT
NYEPGPYSIISTENYAKINKAYQIIQKAFGASGQDIPALSDTNTELKFTINKKNGNNN
NGEEIVTKNNAQELLKQASTILTTLNEACPWINNGGAGPASSGSLWEGIDKGDGSACG
IFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKTFNPYKDASFSQSMFANA
RAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKDGNGNLRGTPSGTVTSNTWGAGC
AYVGETVTNLKNSIAHFGDQAERIHNAQNLAYTLANFSSQYKKLGEHYDSITAAVSSL
PDTQSLQNMVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRTQELGSNPFRRAGLIAAST
TNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGS
DLLVNFINDKATKHNKISFGAFGGIAIAGTSWLNSQFVNLANVNNYYKAKINTSNFQF
LFNLGLRTNLARNKRRGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLN
YVFAY"
misc_feature complement(23275..23784)
/locus_tag="HPKB_0026"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 25581..25973
/locus_tag="HPKB_0027"
/db_xref="GeneID:12340448"
CDS 25581..25973
/locus_tag="HPKB_0027"
/note="Consensus COG by CONSORF: COG1864. Candidate starts
by CONSORF: 25563,25581"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761576.1"
/db_xref="GI:384887065"
/db_xref="GeneID:12340448"
/translation="MTNITPKAKNTNRHSVLSVEKEGRNLARKYHQVLVEELTIIKQG
YRTFSSKNIAIPSGFWYHYDISLTDSYENAKSECFYIPNDNQKYPLQKMRRDCKEYER
LEKQVVFKNNKNAELNELPKYLNNAKKY"
misc_feature <25581..25970
/locus_tag="HPKB_0027"
/note="DNA/RNA endonuclease G, NUC1 [Nucleotide transport
and metabolism]; Region: NUC1; COG1864"
/db_xref="CDD:32049"
misc_feature <25581..25913
/locus_tag="HPKB_0027"
/note="DNA/RNA non-specific endonuclease; Region:
Endonuclease_NS; smart00892"
/db_xref="CDD:197960"
gene complement(26221..27048)
/gene="tyrA"
/locus_tag="HPKB_0028"
/db_xref="GeneID:12340449"
CDS complement(26221..27048)
/gene="tyrA"
/locus_tag="HPKB_0028"
/note="Consensus COG by CONSORF: COG0287"
/codon_start=1
/transl_table=11
/product="prephenate dehydrogenase"
/protein_id="YP_005761577.1"
/db_xref="GI:384887066"
/db_xref="GeneID:12340449"
/translation="MKAGIIGLGLMGGSLGLALQEWGRFKSVIGYDHNALHAKLALTL
GLVDECVEFEKILECDVIFLAIPVEGIIACLKKMTPVKKSATIIDLGGAKAQIIHNIP
KSIRKNFIAAHPMCGTEFYGPKASVKGLYENALVILCDLEDSGTEQVEIAKEIFLGIK
ARLIKMKSNEHDTHVAYISHLPHVLSYALANSVLKQNDPEMILSLAGGGFRDMSRLSK
SSPLMWKDIFKQNRDNVLEAIKKCEKEIAQAKAWIENNDYESLAEWMAQANKLQEFM"
misc_feature complement(26224..26991)
/gene="tyrA"
/locus_tag="HPKB_0028"
/note="prephenate dehydrogenase; Validated; Region:
PRK08507"
/db_xref="CDD:181452"
misc_feature complement(26248..26991)
/gene="tyrA"
/locus_tag="HPKB_0028"
/note="Prephenate dehydrogenase; Region: PDH; pfam02153"
/db_xref="CDD:202132"
gene complement(27073..29568)
/locus_tag="HPKB_0029"
/db_xref="GeneID:12340450"
CDS complement(27073..29568)
/locus_tag="HPKB_0029"
/note="Consensus COG by CONSORF: COG0466"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease"
/protein_id="YP_005761578.1"
/db_xref="GI:384887067"
/db_xref="GeneID:12340450"
/translation="MTEDFPKILPLLVEEDTFLYPFMIAPIFLQNNASIKAVAYAKNN
KSLVFIACQKDKLNDNEAPYYDVGVIGSVMREANMPNGRVKLLFNGIAKGRILEPAKE
NEQGFLEAQISPIEYLEYDKENIQAIVEVLKEKVITLANVSSLFPPDLIKALEDNDDP
NRIADLIAAALHLKRDQAYSLFANNNTEQRLLDLIDIVIEETKTQKLQKEIKSKVHQK
MEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIKPFLKEEAFKEIKKQID
RLSRTHADSSDSATLQNYIETMLDVPFGQYGKKALDIKHVREQLDKDHYSLKRPKERI
VEYFATMQLLEMRHKKKQEKKDKAKGTILCFYGPPGVGKTSLANSIAKAIERPLVRIA
LGGLEDVNELRGHRRTYIGSMPGRIVQGLIEAKKMNPVMVLDEIDKVDRSVRGDPASA
LLEILDPEQNIAFRDHYANFSIDLSQVIFIATANNIDRIQAPLRDRMEFISVSSYTPN
EKEEIAKNYLIPQELEKHALKPSEVEISHECLKLIIEKYTREAGVRDLRRQIATIMRK
AALKYLEDGPHKKGRTKKGEDRKSENEENEKKGENKDFCVSVTPNNLKEYLERMVFEI
DPIDEENKIGIVNGLAWTPVGGDVLKIEALKIRGKGELKLTGSLGDVMKESAIIAFSV
VKALLDNETLKAPKIPSETPKDAEGKKKKKELKVYNAYDLHLHVPEGATPKDGPSAGI
AMASVIASILCDRATRSEVAMTGELTLSGEVLPIGGLKEKLIAAFKAGIKTALIPVKN
YERDLDEIPAEVRESLNIVAVKNIAEVLEKTLL"
misc_feature complement(27079..29541)
/locus_tag="HPKB_0029"
/note="ATP-dependent protease La; Region: lon; TIGR00763"
/db_xref="CDD:162028"
misc_feature complement(28069..28482)
/locus_tag="HPKB_0029"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(28447..28470)
/locus_tag="HPKB_0029"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(28123..28125,28267..28269,28444..28467))
/locus_tag="HPKB_0029"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(28264..28281)
/locus_tag="HPKB_0029"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(28081..28083)
/locus_tag="HPKB_0029"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(27076..27750)
/locus_tag="HPKB_0029"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
cl12214"
/db_xref="CDD:209472"
gene complement(29609..30271)
/locus_tag="HPKB_0030"
/db_xref="GeneID:12340451"
CDS complement(29609..30271)
/locus_tag="HPKB_0030"
/note="Consensus COG by CONSORF: COG4105"
/codon_start=1
/transl_table=11
/product="competence lipoprotein (comL)"
/protein_id="YP_005761579.1"
/db_xref="GI:384887068"
/db_xref="GeneID:12340451"
/translation="MRLKHFKTFLFITMAIIVIGTGCANKKKKKDEYNKPAIFWYQGI
LREILFANLETADNYYSSLQSEHINSPLVPEAMLALGQAHMKKKEYVLASFYFDEYIK
RFGTKDNVDYLTFLKLQSHYYAFKNHSKDQEFISNSIVSLGEFIEKYPNSRYRPYVEY
MQIKFILGQNELNRAIANVYKKRHKPEGVKRYLERIDETLEKETKPKPSHMPWYVLIF
DW"
misc_feature complement(29612..30262)
/locus_tag="HPKB_0030"
/note="DNA uptake lipoprotein [General function prediction
only]; Region: ComL; COG4105"
/db_xref="CDD:226590"
gene 30678..31067
/locus_tag="HPKB_0031"
/db_xref="GeneID:12340452"
CDS 30678..31067
/locus_tag="HPKB_0031"
/note="Consensus COG by CONSORF: COG1699. Candidate starts
by CONSORF: 30666,30678"
/codon_start=1
/transl_table=11
/product="flagellar assembly protein FliW"
/protein_id="YP_005761580.1"
/db_xref="GI:384887069"
/db_xref="GeneID:12340452"
/translation="MIFDVKAPILGFETIHKMRLQKIDEIFLRLNSAEDNSVVSFTLV
NPFALRKYDFEVPTPLKILLELEGAKSVLIANIMVVQTPIELSTVNYLAPLIFNFDKQ
LMGQVVLDSNKYPHYHLRENILSHTHE"
misc_feature 30678..31064
/locus_tag="HPKB_0031"
/note="flagellar assembly protein FliW; Provisional;
Region: PRK13282"
/db_xref="CDD:183946"
gene 31240..31719
/gene="fabZ"
/locus_tag="HPKB_0032"
/db_xref="GeneID:12340453"
CDS 31240..31719
/gene="fabZ"
/locus_tag="HPKB_0032"
/note="Consensus COG by CONSORF: COG0764"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_005761581.1"
/db_xref="GI:384887070"
/db_xref="GeneID:12340453"
/translation="MEQNHQNLQSQFFIEHILQILPHRYPMLLVDRITELQANKKIVA
YKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFM
TIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERD"
misc_feature 31300..31707
/gene="fabZ"
/locus_tag="HPKB_0032"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene 31723..32535
/locus_tag="HPKB_0033"
/db_xref="GeneID:12340454"
CDS 31723..32535
/locus_tag="HPKB_0033"
/note="Consensus COG by CONSORF: COG1043"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine acyltransferase"
/protein_id="YP_005761582.1"
/db_xref="GI:384887071"
/db_xref="GeneID:12340454"
/translation="MSKIAKTAIISPKAEIGKGVEIGEFCVIGDHIKLNDGVKLHNNV
TLQGHTFIGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGI
KKTIIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDHVNIGGLTAIHQFVR
IAKGCMIAGKSALGKDVPPYCTAEGNRAFIRGLNRHRMRQLLESKDIDFIHALYKRLF
RPVLSLRESAKLELEEHANNPFVKEICSFILESSRGVAYKSSEYSSEEKQEE"
misc_feature 31723..32487
/locus_tag="HPKB_0033"
/note="UDP-N-acetylglucosamine acyltransferase;
Provisional; Region: PRK05289"
/db_xref="CDD:179994"
misc_feature 31729..32487
/locus_tag="HPKB_0033"
/note="UDP-N-acetylglucosamine O-acyltransferase
(UDP-GlcNAc acyltransferase): Proteins in this family
catalyze the transfer of (R)-3-hydroxymyristic acid from
its acyl carrier protein thioester to UDP-GlcNAc. It is
the first enzyme in the lipid A biosynthetic...; Region:
LbH_UDP-GlcNAc_AT; cd03351"
/db_xref="CDD:100042"
misc_feature order(31927..31929,31936..31938,32005..32007,32074..32076,
32083..32085,32140..32142,32188..32193,32227..32229,
32302..32304,32320..32325)
/locus_tag="HPKB_0033"
/note="active site"
/db_xref="CDD:100042"
gene 32537..33883
/gene="clpX"
/locus_tag="HPKB_0034"
/db_xref="GeneID:12340455"
CDS 32537..33883
/gene="clpX"
/locus_tag="HPKB_0034"
/note="Consensus COG by CONSORF: COG1219"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease ATP-binding subunit"
/protein_id="YP_005761583.1"
/db_xref="GI:384887072"
/db_xref="GeneID:12340455"
/translation="MNETLYCSFCKKPESRDPKKRRIIFASNLNKDVCVCEYCIDVMH
GELHKYDRMDSLLALKRERLRRMESSVHEEEFLLSHIPAPKELKAVLDNYVIGQEQAK
KVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLM
AQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEI
DKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDIL
FICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG
RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALE
RKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSKMLP"
misc_feature 32537..33853
/gene="clpX"
/locus_tag="HPKB_0034"
/note="endopeptidase Clp ATP-binding regulatory subunit
(clpX); Region: clpX; TIGR00382"
/db_xref="CDD:161849"
misc_feature 32549..32686
/gene="clpX"
/locus_tag="HPKB_0034"
/note="ClpX C4-type zinc finger; Region: zf-C4_ClpX;
smart00994"
/db_xref="CDD:198062"
misc_feature 32819..>33028
/gene="clpX"
/locus_tag="HPKB_0034"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature 32963..>33220
/gene="clpX"
/locus_tag="HPKB_0034"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 32987..33010
/gene="clpX"
/locus_tag="HPKB_0034"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(32990..33013,33182..33184)
/gene="clpX"
/locus_tag="HPKB_0034"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 33170..33187
/gene="clpX"
/locus_tag="HPKB_0034"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 33572..33820
/gene="clpX"
/locus_tag="HPKB_0034"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene 33925..34968
/locus_tag="HPKB_0035"
/db_xref="GeneID:12340456"
CDS 33925..34968
/locus_tag="HPKB_0035"
/note="Consensus COG by CONSORF: COG1077"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein"
/protein_id="YP_005761584.1"
/db_xref="GI:384887073"
/db_xref="GeneID:12340456"
/translation="MIFSKLIGLFSHDIAIDLGTANTIVLVKGQGIIINEPSIVAVRM
GLFDSKAYDILAVGSEAKEMLGKTPNSIRAIRPMKDGVIADYDITAKMIRYFIEKAHK
RKTWIRPRIMVCVPYGLTSVERNAVKESALSAGAREVFLIEEPMAAAIGAGLPVKEPQ
GSLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIRKKFNLLIGERTGEE
IKIEIGCAIKLDPPLTMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVL
EEVKPDLAKDIVQNGVVLTGGGALIKGLDKYLSDMVKLPVYVGDEPLLAVAKGTGEAI
QDLDLLSRVGFSE"
misc_feature 33943..34962
/locus_tag="HPKB_0035"
/note="rod shape-determining protein MreB; Provisional;
Region: PRK13927"
/db_xref="CDD:237562"
misc_feature 33964..34938
/locus_tag="HPKB_0035"
/note="MreB and similar proteins; Region: MreB_like;
cd10225"
/db_xref="CDD:212668"
misc_feature order(33973..33975,33979..33990,34165..34167,34354..34356,
34420..34422,34426..34437,34498..34503,34573..34575,
34582..34587,34810..34818,34822..34827,34891..34893,
34900..34902)
/locus_tag="HPKB_0035"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212668"
misc_feature order(33973..33975,34420..34422)
/locus_tag="HPKB_0035"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:212668"
misc_feature order(34066..34068,34114..34116,34138..34140,34399..34401,
34405..34407,34465..34467,34561..34563,34567..34569,
34636..34638,34660..34662,34669..34671,34759..34761,
34768..34770,34864..34866,34936..34938)
/locus_tag="HPKB_0035"
/note="putative protofilament interaction site
[polypeptide binding]; other site"
/db_xref="CDD:212668"
misc_feature order(34381..34386,34408..34410,34786..34794,34867..34869,
34873..34875,34882..34884)
/locus_tag="HPKB_0035"
/note="RodZ interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212668"
gene 34972..35718
/locus_tag="HPKB_0036"
/db_xref="GeneID:12340457"
CDS 34972..35718
/locus_tag="HPKB_0036"
/note="Consensus COG by CONSORF: COG1792"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein"
/protein_id="YP_005761585.1"
/db_xref="GI:384887074"
/db_xref="GeneID:12340457"
/translation="MRFYFKFLWLLGIFLIFYFLDFKGSSSYISDRIKNALMNTKNSL
LDNIQAYFFQAKNIKEFQKERLILEALKLENADLKERLNSVYPLEKPKMLYSPTFMTS
FISLEDTHSVSLNPIMNLEENKIYGLVSHNQAIGIAVLEKGRLNGFLNAHKRCAYSVM
IGKNQVLGFIGSNFKQELVVDFIVPSAEINIGDQVLTSGLDGIFGAGVFVGEVSSIED
HYTYKSAVLKNAFLSNAKLLRHVFLSDVKN"
misc_feature 34972..35712
/locus_tag="HPKB_0036"
/note="Cell shape-determining protein [Cell envelope
biogenesis, outer membrane]; Region: MreC; COG1792"
/db_xref="CDD:31977"
misc_feature 35293..35712
/locus_tag="HPKB_0036"
/note="rod shape-determining protein MreC; Region: MreC;
pfam04085"
/db_xref="CDD:202883"
gene 36046..36687
/locus_tag="HPKB_0037"
/db_xref="GeneID:12340458"
CDS 36046..36687
/locus_tag="HPKB_0037"
/note="Consensus COG by CONSORF: COG0745"
/codon_start=1
/transl_table=11
/product="putative transcriptional regulator"
/protein_id="YP_005761586.1"
/db_xref="GI:384887075"
/db_xref="GeneID:12340458"
/translation="MQKKIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSV
ERFNLLLLDVQVPEMNSLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYL
KKPFDLDELEARIKRFFNDDPIEIMPNIFYYQHSLNIKGKKEILAPKTAQLLEYFLEH
KGQIISSQALENNLWEQAIDDSTLRTYIKVLRKLLGKNCIETHKGVGYRFNPL"
misc_feature 36052..36681
/locus_tag="HPKB_0037"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature 36061..36402
/locus_tag="HPKB_0037"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(36070..36075,36202..36204,36226..36228,36289..36291,
36346..36348,36355..36360)
/locus_tag="HPKB_0037"
/note="active site"
/db_xref="CDD:238088"
misc_feature 36202..36204
/locus_tag="HPKB_0037"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(36211..36216,36220..36228)
/locus_tag="HPKB_0037"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 36355..36363
/locus_tag="HPKB_0037"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 36445..36675
/locus_tag="HPKB_0037"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(36484..36486,36541..36546,36592..36594,36601..36603,
36625..36630,36649..36651,36664..36666)
/locus_tag="HPKB_0037"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene 36743..37855
/locus_tag="HPKB_0038"
/db_xref="GeneID:12340459"
CDS 36743..37855
/locus_tag="HPKB_0038"
/note="Consensus COG by CONSORF: COG0642. Candidate starts
by CONSORF: 36722,36743"
/codon_start=1
/transl_table=11
/product="periplasmic sensor Signal transduction histidine
kinase"
/protein_id="YP_005761587.1"
/db_xref="GI:384887076"
/db_xref="GeneID:12340459"
/translation="MLVISVLAFNYEKNEKIKMIRMDMDKMASKIASEVVALHMQTHG
DYQNALNDLISRYKDASIALFDSKRRVLYSNIPESANLIKNHKEAGFFSFKGEYYLFS
DETFAHLGVAKMLFKNSKPLHFSSLYRNIVLVFVIAFLCVIGVSVFLGRLFLKPIRNE
ITRIDHFLKNTTHELNTPMSALVLSLKTLEDNQQHRRIKIAIQRMSFLYRSLSYLVMQ
DIERESPMLLDLKALITKENTLFSEMIDYHKLEFKSDLAGVEIKAKEQDFISLYSNLL
MNAIKYSVMHGYIHIELTHEFLKVKNLGYEIPKDKIAELSVRYARFNSSVLGYGIGLD
LVKKVCEKYKMRLEIHSEPSLKGSFYENSFCVQFQG"
misc_feature <37214..37822
/locus_tag="HPKB_0038"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 37241..37399
/locus_tag="HPKB_0038"
/note="His Kinase A (phospho-acceptor) domain; Region:
HisKA; pfam00512"
/db_xref="CDD:201275"
misc_feature order(37241..37243,37253..37255,37265..37267,37274..37276,
37286..37288,37295..37297,37322..37324,37334..37336,
37343..37345,37355..37357,37364..37366,37376..37378)
/locus_tag="HPKB_0038"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 37259..37261
/locus_tag="HPKB_0038"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 37559..37801
/locus_tag="HPKB_0038"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(37562..37564,37574..37576,37583..37585,37640..37642,
37646..37648,37652..37654,37658..37663,37730..37741,
37787..37789,37793..37795)
/locus_tag="HPKB_0038"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 37574..37576
/locus_tag="HPKB_0038"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(37652..37654,37658..37660,37730..37732,37736..37738)
/locus_tag="HPKB_0038"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 37858..39252
/locus_tag="HPKB_0039"
/db_xref="GeneID:12340460"
CDS 37858..39252
/locus_tag="HPKB_0039"
/note="Candidate starts by CONSORF: 37834,37858"
/codon_start=1
/transl_table=11
/product="putative sugar kinase"
/protein_id="YP_005761588.1"
/db_xref="GI:384887077"
/db_xref="GeneID:12340460"
/translation="MLSVYEKVNALDKRALEEFNLSEDILMENAAMALERAVLQNASL
GAKVIILCGSGDNGGDGYALARRLVGRFKTLVFEMKPAKSPMCQLQKERAKKVGVAIK
AWEEKNKDLECDVLIDCVIGSNFKGELEPFLNFESLSQKARFKIACDIPSGINSKGRV
DKRAFKAHMTISMGAIKSCLLSDRAKDYIGELKVGHLGVFNQTYEIPTDTFLLEKSDL
KLPLRDKKNAHKGDYGHVHILLGKHSGAGLLSALSALSFGSGVVSVQALECEITSNNK
PLELVFCENFPNLLSSFALGMGLENIPKDFNKWLELAPCVLDAGVFYHKEVLQALEKE
VVLTPHPKEFLSLLKLVGINISMLELLDNKLEIARDFSQKYPKVVLLLKGANTLIAHQ
GQVFINILGSVALAKAGSGDVLAGLILSLLSQNYTPLDAAINASLAHALASLEFKNNY
ALTPLDLIEKIKRL"
misc_feature 37858..38460
/locus_tag="HPKB_0039"
/note="yjeF N-terminal region; Region: yjeF_nterm;
TIGR00197"
/db_xref="CDD:161759"
misc_feature 38533..39240
/locus_tag="HPKB_0039"
/note="B.subtilis YXKO protein of unknown function and
related proteins. Based on the conservation of the ATP
binding site, the substrate binding site and the
Mg2+binding site and structural homology this group is a
member of the ribokinase-like superfamily; Region:
YXKO-related; cd01171"
/db_xref="CDD:29355"
misc_feature order(38608..38610,39082..39084,39091..39093)
/locus_tag="HPKB_0039"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:29355"
misc_feature order(38875..38877,39004..39006,39085..39090,39097..39099,
39175..39177)
/locus_tag="HPKB_0039"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:29355"
gene 39263..40729
/locus_tag="HPKB_0040"
/db_xref="GeneID:12340461"
CDS 39263..40729
/locus_tag="HPKB_0040"
/note="Consensus COG by CONSORF: COG0305"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="YP_005761589.1"
/db_xref="GI:384887078"
/db_xref="GeneID:12340461"
/translation="MDHLKHLQQLQNMERIVLSGIVFANHKIEEVHSVLEPSDFYYPP
NGLFFEIALKLHEENCPIDENFIRQKMPKDKQIKEEDLVAIFAASPIDNIEAYVEEIK
NASIKRKLFGLANTIREQALESAQKSSDILGAVEREVYALLNGSTIEGFRDIKEVLES
TMDLIVENQRRGSLEVTGIPTGFTQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVL
SALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCYDHLS
CKKLFFYDKSQVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGNKATKERHEQIAEI
SRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGY
IYQMRAEDNKIDKLKKEGKIEEAQELHLKVNEERRIHKQNGSIEEAEIIVAKNRNGAT
GTVYTRFNAPLTRYEDMPIDSHLEEGQETKVDYDIVTT"
misc_feature 39263..40726
/locus_tag="HPKB_0040"
/note="replicative DNA helicase; Provisional; Region:
PRK08506"
/db_xref="CDD:181451"
misc_feature 39281..39571
/locus_tag="HPKB_0040"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:201435"
misc_feature 39812..40639
/locus_tag="HPKB_0040"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:29985"
misc_feature 39872..39892
/locus_tag="HPKB_0040"
/note="Walker A motif; other site"
/db_xref="CDD:29985"
misc_feature order(39887..39892,40199..40201,40322..40324,40430..40432,
40598..40600,40631..40633)
/locus_tag="HPKB_0040"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29985"
misc_feature 40190..40201
/locus_tag="HPKB_0040"
/note="Walker B motif; other site"
/db_xref="CDD:29985"
misc_feature order(40214..40219,40238..40246,40319..40345,40427..40432,
40568..40573)
/locus_tag="HPKB_0040"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:29985"
gene 40726..42039
/locus_tag="HPKB_0041"
/db_xref="GeneID:12340462"
CDS 40726..42039
/locus_tag="HPKB_0041"
/note="Consensus COG by CONSORF: COG0658"
/codon_start=1
/transl_table=11
/product="competence locus E"
/protein_id="YP_005761590.1"
/db_xref="GI:384887079"
/db_xref="GeneID:12340462"
/translation="MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKL
DFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMIFYATIKEPLKNLQYRYAQFFGK
IKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGV
LVWVFLLGYLLLLDFLPSFFRAFLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPK
LLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLSALVFLNMLIIVHAF
FPMFSPYQLFSIPLGLIFIVFFPLSLILHAVDLGSLLDSILNMPLTIPTISVFSPLWL
LGTHLFLTILSARFFKVYVSMNVLSVGFFLYCCYQYIIMPSLIVG"
misc_feature 40924..42036
/locus_tag="HPKB_0041"
/note="Predicted membrane metal-binding protein [General
function prediction only]; Region: ComEC; COG0658"
/db_xref="CDD:31003"
misc_feature 41185..41862
/locus_tag="HPKB_0041"
/note="Competence protein; Region: Competence; pfam03772"
/db_xref="CDD:190745"
gene 42068..42952
/gene="ubiA"
/locus_tag="HPKB_0042"
/db_xref="GeneID:12340463"
CDS 42068..42952
/gene="ubiA"
/locus_tag="HPKB_0042"
/note="Consensus COG by CONSORF: COG0382"
/codon_start=1
/transl_table=11
/product="4-hydroxybenzoate polyprenyltransferase"
/protein_id="YP_005761591.1"
/db_xref="GI:384887080"
/db_xref="GeneID:12340463"
/translation="MLKKITHKIKALSELVALEHTIFSSMFLLMAMVISSYQKNQTLF
FGLETLILCFLALLGARNFAMGFNRLVDRDIDKDNPRTKNRPSVDGRISVKGMVVFSA
LNALLFVVVSYFINPLAFRLSLPFLIILGGYSYFKRFSSLAHFIVGLALGLAPIAGSV
AVLGDIPLWNVFLALGVMLWVAGFDLLYSLQDMEFDKERGLFSIPSQLGEKWCLNLSR
LSHLVALVCWLCFVKCYHGGLFAYLGLGVSALILLYEQILVARDYKNIPKAFFVSNGY
LGVVFFIFIVLDVGFKHA"
misc_feature 42071..42943
/gene="ubiA"
/locus_tag="HPKB_0042"
/note="prenyltransferase; Reviewed; Region: ubiA;
PRK12874"
/db_xref="CDD:183806"
gene 42921..43439
/locus_tag="HPKB_0043"
/db_xref="GeneID:12340464"
CDS 42921..43439
/locus_tag="HPKB_0043"
/note="Consensus COG by CONSORF: COG0382. Candidate starts
by CONSORF: 42888,42921"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761592.1"
/db_xref="GI:384887081"
/db_xref="GeneID:12340464"
/translation="MSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKTTRS
LAVLEEFDWLGSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKNRIT
ALGHGLICIKKSSLIAPQTYYGRCVLEGKILAFFGVARDKNFLEITRMHALDIKRYDS
FIVQSERKGLKL"
gene 43452..43955
/locus_tag="HPKB_0044"
/db_xref="GeneID:12340465"
CDS 43452..43955
/locus_tag="HPKB_0044"
/note="Consensus COG by CONSORF: COG0583"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761593.1"
/db_xref="GI:384887082"
/db_xref="GeneID:12340465"
/translation="MLSSNDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTL
DESYQENYIYSKRLKELEGRLEGLSLEKSVKEDSSLRTTLSHLYNQLQEIQKSMDKER
DYLEEKIIILENKFKDMGHYAANDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFV
LNMAGLK"
gene 43952..44755
/locus_tag="HPKB_0045"
/db_xref="GeneID:12340466"
CDS 43952..44755
/locus_tag="HPKB_0045"
/note="Consensus COG by CONSORF: COG0688"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="YP_005761594.1"
/db_xref="GI:384887083"
/db_xref="GeneID:12340466"
/translation="MIALSNALSRVFGSVAGYEFPSFIQKGINALYIKIFKIDLSEFE
PLENYKSLNALFTRSLKKERPFDKAPNACIAPCDALITECAFLDNDSALQIKGMPYKA
HELVGEINPLSPSFFYVNFYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLYKN
KNLFVGNERVALVAKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKAHFTQTYSYN
PPIKVKKGDNLGNFEMGSTIVLFVQNTAFKDLKEKSVKFGESIGEFHAN"
misc_feature 43958..44743
/locus_tag="HPKB_0045"
/note="phosphatidylserine decarboxylase; Provisional;
Region: PRK03934"
/db_xref="CDD:179679"
gene 44745..45755
/locus_tag="HPKB_0046"
/db_xref="GeneID:12340467"
CDS 44745..45755
/locus_tag="HPKB_0046"
/note="Consensus COG by CONSORF: COG0379"
/codon_start=1
/transl_table=11
/product="quinolinate synthetase"
/protein_id="YP_005761595.1"
/db_xref="GI:384887084"
/db_xref="GeneID:12340467"
/translation="MPTDNDLKTSILELLRDLDALLVAHFYQKDEIVELAHYTGDSLE
LAKIASQSDKNLIVFCGVHFMGESVKALAFNKQVIMPKLSCCSMARMIDSHYYDRSVH
LLKEYGVKEFYPITYINSNAEVKAKVAKDGGVVCTSRNASKIFNHALKQNKKIFFLPD
KCLGENLALENGLKSAILGANSKEEIKNADVVCYNGFCSVHQLFKLEDIEFYRQKYPD
ILIAVHPECEPSVVQNADFSGSTSQIIEFVEKLSPHQKVAIGTESNLVNRLKAKRNHQ
NTFILSSTLALCPTMNETTLKDLFEVLKAYKNHRAFNAIELKDEVARLAKLALTKMME
LS"
misc_feature 44745..45752
/locus_tag="HPKB_0046"
/note="Quinolinate synthetase A protein; Region: NadA;
cl00420"
/db_xref="CDD:185987"
gene 45755..46576
/locus_tag="HPKB_0047"
/db_xref="GeneID:12340468"
CDS 45755..46576
/locus_tag="HPKB_0047"
/note="Consensus COG by CONSORF: COG0157"
/codon_start=1
/transl_table=11
/product="nicotinate-nucleotide pyrophosphorylase"
/protein_id="YP_005761596.1"
/db_xref="GI:384887085"
/db_xref="GeneID:12340468"
/translation="MEIKTFLEGALKEDLGHGDLFERVLEKDFKATAFVRAKQEGVFS
GEKYALALLEMTGIECVQTIKDKERFKPKDTLMEIRGDFSMLLKVERTLLNLLQHSSG
IATLTSRFVEALNSHEVRLLDTRKTRPLLRIFEKYSVLNGGASNHRLGLDDALMLKDT
HLKHIKDLKSFLTHARKNLPFTAKIEIECESFEEAKNAMNAGADIVMCDNMSVLETKE
IAAYRDMHYPFVLLEASGNISLESINAYAKSGVDAISVGALIHQATFIDMHMKMA"
misc_feature 45755..46573
/locus_tag="HPKB_0047"
/note="nicotinate-nucleotide pyrophosphorylase;
Provisional; Region: PRK05848"
/db_xref="CDD:180286"
misc_feature 45764..46567
/locus_tag="HPKB_0047"
/note="Quinolinate phosphoribosyl transferase (QAPRTase or
QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis of
NAD in both prokaryotes and eukaryotes. It catalyses the
reaction of quinolinic acid (QA) with...; Region: QPRTase;
cd01572"
/db_xref="CDD:29619"
misc_feature order(45815..45817,46022..46027,46037..46039,46127..46129,
46133..46135,46145..46150,46205..46210,46220..46222,
46226..46228,46232..46237,46244..46246,46277..46279,
46535..46537)
/locus_tag="HPKB_0047"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29619"
misc_feature order(46124..46132,46193..46198,46379..46381,46457..46462,
46517..46519,46523..46528,46535..46537)
/locus_tag="HPKB_0047"
/note="active site"
/db_xref="CDD:29619"
gene 46600..50106
/locus_tag="HPKB_0048"
/db_xref="GeneID:12340469"
CDS 46600..50106
/locus_tag="HPKB_0048"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761597.1"
/db_xref="GI:384887086"
/db_xref="GeneID:12340469"
/translation="MLKEYLESIKDLTTEKNELTHRPSLHNLLSRLKDHFNKEFKIEH
EPKKEQGSQPDFRVSFQGLNIGYIENKRAGANLSQLLKSDQIRKYLELNPNLMLTDYL
NFVWVGKDENNAPLIKKEISVASLDELSKPLKPKPQTERDLIELFKSFFNHEAAPITN
AKDFATHLSPRTRYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTLIY
SLFLAKLNHPFEKINLDNVRSSIPKNFAVIREMADFLKRLDGIKEIQWLLNEILSSIN
HVDMDSILKDLNDDKDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLL
KTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKY
QNLLKQFYGFEYLIAPYAIAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQPSETIA
YRGLQPIFETELKSAQEIKRDENILIITGNPPYSGASSNEGLFEWEVKATYGIEPEFQ
TIEIEKKVKLTDKIQTLLKNIQTQKESDSKNALKNGSKNALKNLKQLHSKYKLQNEKN
PKWLLDDYVKFMRFAQNKIKSLGHGLFGFISNNAFLDNPTFRGLRRSLLECYDELYIL
NLHGNARKKEKTPQGAKDENVFNIKQGVSINLFVKKAQTTKQKICYYDVYGERAEKYA
FLAQNDLNSIEWLELTPREPFYLLLPLKTRLLDEYEQGFSVKDMFQVGGTGICSKRDH
VVFHKTKESLLELLKDFSTLEPNELRRKYDIGDDSRDWRLEYAIREVKTNIKRLEKYI
VLCQYRPFDYRWTYYTPNSRTFLAYPVYDVFKHMLPLPPPTNPKTPNQTRKNVALITS
RRFCQSQKSGVGFVSNKISDLRTWTCPGMEGGDYVNPLYHNPNYTENFTPEFRSFIDK
RYNHSFEPLEVLGYIYALLYSPNYRKRYEEFLKADYPKILFTENKDLFRVLSLLGIEL
IGLHVLNQESLNYSFEKLKDATIGESVYKEERNPIIKKPSHNEPEKRLYINHSAYFSG
VSQEIYDYRIGGYCVLDKYLKSHKNEPCDFDHVTRIIKVIARTIEIQKTLGFLTSDLP
HLKGNDSKALTQEILQNPPPPPPHLIPISPLSYRAKPKPSETLTLMAHSSAKKQAITT
FTAEAGEQPSLYSALPSRSNLR"
misc_feature <47491..49827
/locus_tag="HPKB_0048"
/note="Predicted helicase [General function prediction
only]; Region: COG4889"
/db_xref="CDD:34498"
gene 50335..51414
/locus_tag="HPKB_0049"
/db_xref="GeneID:12340470"
CDS 50335..51414
/locus_tag="HPKB_0049"
/note="Consensus COG by CONSORF: COG0863. Candidate starts
by CONSORF: 50329,50335"
/codon_start=1
/transl_table=11
/product="adenine specific DNA methyltransferase (HINFIM)"
/protein_id="YP_005761598.1"
/db_xref="GI:384887087"
/db_xref="GeneID:12340470"
/translation="MDFLKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGE
LKRFEGTKFQGVEDHWDKFDSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRI
GFHLQNLGFWILNDIIWHKSNPVPNFAGKRLCNAHETLIWCAKHKNSKVSFNYKTMKY
LNNDKQEKSVWQIPICIGNERLKDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPF
FGTGTTGAVAKSMNRYFIGIEKDSFYIKEAAKRLNNTRDKSDFITNLGLETKPPKVPM
SLLISKQLLKIGDFLYSSNKEKICQVLENGQVRDNENHETSIHKMSAKYLNKTNHNGW
KFFYAYYQNQFLLLDELRYICQKEF"
misc_feature 50335..51201
/locus_tag="HPKB_0049"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature 50416..51084
/locus_tag="HPKB_0049"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene 51414..52316
/locus_tag="HPKB_0050"
/db_xref="GeneID:12340471"
CDS 51414..52316
/locus_tag="HPKB_0050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761599.1"
/db_xref="GI:384887088"
/db_xref="GeneID:12340471"
/translation="MDYQTFNEIFNRFVFGTSKAKLLENIAENPERYLGIFRPTKPKT
KLLQNLLTSQTSHEIKFGDAFERLIEESLKEHNFSPLSKKIPYYNKDKEKRESLELDQ
LAKKDNTYYFIEQKMRDDHDSAKKRGQIDNFERKLEALIHRYGENIQGYFYFIDESLN
KNQNYYKEELQKLSVGYGVPLSLCYGKELFENLNILQVWDEILNHLARWRETLPDLPS
LNFDEDPLESFEEIKDLAPSVYRKLLDNDGIFNLVLILFPEQKVLKRLAEYFKQQNKT
IYQQLASKLEERLSSKENHQKPLS"
gene 52670..54034
/locus_tag="HPKB_0051"
/db_xref="GeneID:12340472"
CDS 52670..54034
/locus_tag="HPKB_0051"
/note="Consensus COG by CONSORF: COG0793. Candidate starts
by CONSORF: 52655,52658,52670"
/codon_start=1
/transl_table=11
/product="carboxyl-terminal protease"
/protein_id="YP_005761600.1"
/db_xref="GI:384887089"
/db_xref="GeneID:12340472"
/translation="MTKRLFKGLLAISLAVSLHGGEVKEKKPVKPVKEDPQELAAKRV
EAFSRFSNVVTEIEKKYVDKITISEIMTKAIEGLLSNLDAHSAYLNEKKFKEFQAQTE
GEFGGLGITVGMRDGVLTVIAPLEGTPAYKAGVKAGDNILKINNESTLSMSIDDAINL
MRGKPKTPIQITIVRKNEPKPLVFNIVRDIIKVPSVYVKKIKDTSYLYVRVNSFDKNV
TKSVLDGLKANPKVKGIVLDLRGNPGGLLNQAVGLSNLFIKEGILVSQKGKNKEENLE
YKANGRAPYTNLPIAVLVNGGSASASEIVAGALQDHKRAVIIGEKTFGKGSVQVLLPV
NKDEAIKITTARYYLPSGRTIQAKGITPDIVIYPGKVPENENKFSLKEADLKHHLEQE
LKKIDDKTPNSKEADKDKKNEEEKEVTPKMINDDIQLKTAIDSLKTWSIVDEKMDEKA
PKKK"
misc_feature 52796..>52984
/locus_tag="HPKB_0051"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:207630"
misc_feature 52835..53827
/locus_tag="HPKB_0051"
/note="C-terminal peptidase (prc); Region: prc; TIGR00225"
/db_xref="CDD:161775"
misc_feature 52982..53239
/locus_tag="HPKB_0051"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:29045"
misc_feature order(52988..52999,53003..53005,53138..53143,53150..53155)
/locus_tag="HPKB_0051"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29045"
misc_feature 53216..53767
/locus_tag="HPKB_0051"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature order(53567..53569,53642..53644)
/locus_tag="HPKB_0051"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
gene 54067..55215
/locus_tag="HPKB_0052"
/db_xref="GeneID:12340473"
CDS 54067..55215
/locus_tag="HPKB_0052"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761601.1"
/db_xref="GI:384887090"
/db_xref="GeneID:12340473"
/translation="MTFCARSIKIVKTIGLILSFLATFLVADLVAENTHDPEEIKAKV
VYVKIPRLEDLENNPVYIGQTIGVTYDLLLFDAEFLEAKIKDELDKTQIELLSKMPKW
KKVEKELFRATYYYKIKGIKASIPSLEVSAFSNKDKYIDYSIAPKVTLQVTDLSKNPR
YANVMAKDLQVLQYKTKDYDDKNNILVVELAFKEATWEDFHIKEAIKQGFDNASLNQI
KAKEGSVFYYCVLPKTIQNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNF
LVFSNVALLALCVFFLVLFFIFGRKLIFLGLGILCLGFVLYHLLFTQKSALLLAHKKI
RILPTQNSTILGLSKNEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK"
gene 55202..55909
/gene="plsC"
/locus_tag="HPKB_0053"
/db_xref="GeneID:12340474"
CDS 55202..55909
/gene="plsC"
/locus_tag="HPKB_0053"
/note="Consensus COG by CONSORF: COG0204"
/codon_start=1
/transl_table=11
/product="1-acylglycerol-3-phosphate O-acyltransferase"
/protein_id="YP_005761602.1"
/db_xref="GI:384887091"
/db_xref="GeneID:12340474"
/translation="MKSNKKSLRAIYRALVIAIGLAVIIVFNYFNRKNNNARSSRRAC
SCFFPLTGVTLEKIGTFDTDAKLIVLNHQSLLDIIYLEAYHPSNICWIAKKELGEIPF
YGHALTDTGMILIDREDKKGIVSLLKACKEKLDQNRPLVIFPEGTRGKGGEKFLPFKQ
GAKIIAEKFQLKIQPMVLINSIKIFNSKPLEAYKARTRLVMLESYTPNFSSPTWYEEL
EERMQKEYLKHYHELNA"
misc_feature 55340..55870
/gene="plsC"
/locus_tag="HPKB_0053"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature <55400..55906
/gene="plsC"
/locus_tag="HPKB_0053"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:30553"
misc_feature order(55415..55417,55424..55426,55430..55432,55478..55489,
55637..55645)
/gene="plsC"
/locus_tag="HPKB_0053"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
gene 55936..56607
/locus_tag="HPKB_0054"
/db_xref="GeneID:12340475"
CDS 55936..56607
/locus_tag="HPKB_0054"
/note="Consensus COG by CONSORF: COG0692. Candidate starts
by CONSORF: 55906,55936"
/codon_start=1
/transl_table=11
/product="uracil-DNA glycosylase"
/protein_id="YP_005761603.1"
/db_xref="GI:384887092"
/db_xref="GeneID:12340475"
/translation="MAWREFLQSEFKKPYFLEIEKRYLEALKSPKTIFPKSSNLFYAL
NLTPPSAVKIILLGQDPYHSTYLENQQELPVAMGLSFSVEKNAPIPPSLKNIFKELHA
NLGVPVPCCGDLSAWAKRGMLLLNAILSVEKNQAASHKRIGWEAFSDQILMRLFEANA
PLIVVLLGKIAQKKIALIPKNKHIVITAPHPSPLSRGFLGSGVFTSVQKAYREIYHKD
FDFSL"
misc_feature 55975..56595
/locus_tag="HPKB_0054"
/note="Family 1 of Uracil-DNA glycosylase (UDG) enzymes;
Region: UDG_F1; cd10027"
/db_xref="CDD:198425"
misc_feature order(56107..56121,56173..56178,56209..56211,56311..56313,
56503..56505)
/locus_tag="HPKB_0054"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:198425"
misc_feature order(56110..56115,56119..56124,56203..56211,56437..56442,
56500..56505,56509..56520)
/locus_tag="HPKB_0054"
/note="active site"
/db_xref="CDD:198425"
misc_feature order(56110..56112,56119..56127,56203..56211,56338..56343,
56437..56442,56503..56505,56509..56517)
/locus_tag="HPKB_0054"
/note="UGI interface [polypeptide binding]; other site"
/db_xref="CDD:198425"
misc_feature order(56113..56115,56503..56505)
/locus_tag="HPKB_0054"
/note="catalytic site [active]"
/db_xref="CDD:198425"
gene 56696..57688
/locus_tag="HPKB_0055"
/db_xref="GeneID:12340476"
CDS 56696..57688
/locus_tag="HPKB_0055"
/note="Consensus COG by CONSORF: COG0057"
/codon_start=1
/transl_table=11
/product="glyceraldehyde-3-phosphate dehydrogenase"
/protein_id="YP_005761604.1"
/db_xref="GI:384887093"
/db_xref="GeneID:12340476"
/translation="MPIRIAINGTGRIGLCAIRVASQRKDVEIVAINSTAETETLLHL
IRHDSVHGHFEAKLNADRTLNIGHSKNILVLSERDINKLDFSIANAEIIIECTGKFNS
LEASSAHLKNSVKKVIISAPAQNAPTFVYGVNHKNYHNESVISNASCTTNASAPLLKI
LDEAFKVENALLTTIHSYTNDQNLLDTKHKDIRRARAAGLNLIPTSTGVSKAISLVLP
HLGPKITGLAIRVPTPNVSLVDLSLSFKKSVSKASVQHVLKDACKHAFKGIVSVDEER
LVSSDFISSPFSAIVIDDQIMTIGEKNAKVLAWYDNEMGYSERLIDMVQYIAQN"
misc_feature 56702..57139
/locus_tag="HPKB_0055"
/note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain; Region: Gp_dh_N; pfam00044"
/db_xref="CDD:200954"
misc_feature 56705..57661
/locus_tag="HPKB_0055"
/note="glyceraldehyde-3-phosphate dehydrogenase, type I;
Region: GAPDH-I; TIGR01534"
/db_xref="CDD:211668"
misc_feature 57158..57625
/locus_tag="HPKB_0055"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; pfam02800"
/db_xref="CDD:202402"
gene 57725..58912
/gene="pgk"
/locus_tag="HPKB_0056"
/db_xref="GeneID:12340477"
CDS 57725..58912
/gene="pgk"
/locus_tag="HPKB_0056"
/note="Consensus COG by CONSORF: COG0126. Candidate starts
by CONSORF: 57704,57716,57725"
/codon_start=1
/transl_table=11
/product="phosphoglycerate kinase"
/protein_id="YP_005761605.1"
/db_xref="GI:384887094"
/db_xref="GeneID:12340477"
/translation="MQNVKNIQEVEVGHKRVLIRVDFNVPLDENLNITDDTRIRESLP
TIQFCIDNKAKDIILVSHLGRPKGVEEKLSLKPFLKRLERLLNHEVVFSQNIAQLKQA
LNENAPTRIFLLENIRFLKGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTA
KFAPIKVSGFLLKKEIDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLIDKLII
AGAMSNTFLKALGYDVQDSSVEDALIKDALELLQSAKEKKVKVYLPIDAVTTDDILNP
KHIKISPVQDIEPKHKIADIGPASVKLFSEVIESAPTIIWNGPLGVHEKQEFARGTTF
LAHKIADTYAFSLIGGGDTIDAINRAGEKDNMSFISTGGGASLELLEGKILPCFEVLD
KRH"
misc_feature 57734..58903
/gene="pgk"
/locus_tag="HPKB_0056"
/note="phosphoglycerate kinase; Provisional; Region: pgk;
PRK00073"
/db_xref="CDD:178841"
misc_feature 57740..58873
/gene="pgk"
/locus_tag="HPKB_0056"
/note="Phosphoglycerate kinase; Region: PGK; pfam00162"
/db_xref="CDD:201047"
misc_feature order(57788..57790,57794..57796,57836..57838,57908..57910,
58076..58078)
/gene="pgk"
/locus_tag="HPKB_0056"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29400"
misc_feature order(58271..58282,58829..58837)
/gene="pgk"
/locus_tag="HPKB_0056"
/note="hinge regions; other site"
/db_xref="CDD:29400"
misc_feature order(58385..58387,58601..58603,58673..58675,58679..58681,
58685..58696,58775..58783)
/gene="pgk"
/locus_tag="HPKB_0056"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:29400"
misc_feature 58778..58780
/gene="pgk"
/locus_tag="HPKB_0056"
/note="catalytic site [active]"
/db_xref="CDD:29400"
gene 58928..59890
/gene="corA"
/locus_tag="HPKB_0057"
/db_xref="GeneID:12340478"
CDS 58928..59890
/gene="corA"
/locus_tag="HPKB_0057"
/note="Consensus COG by CONSORF: COG0598"
/codon_start=1
/transl_table=11
/product="magnesium/cobalt transporter CorA"
/protein_id="YP_005761606.1"
/db_xref="GI:384887095"
/db_xref="GeneID:12340478"
/translation="MVNVFFKQQKFVIKKRFNDFNGFDIEENEVLWFELINPTPNELA
TLSQEYAIHYNTDHSQRVSSVTKYWEDSSSVTINAFFTNQDENETFHTEMATFILSNN
ILFTIYYGTLEIFDSIQKKVLASPKKFEDGFDILTKIFEVYFEKGVECLEWINKQTSL
LRKNIIFKETSTPTHENVLMRLSNLQEFNVALRDSFFDKRRIITALLRSNKVDSDTKN
NLNIILTDFSSLVESTTVNLNSLDNIQNLFASQVNVEQNKIIKLFTVATMAMMPPTLI
GTIYGMNFKFMPELEWQYGYLFALIIMAISTILPVIYFKKKGWL"
misc_feature 58985..59887
/gene="corA"
/locus_tag="HPKB_0057"
/note="magnesium Mg(2+) and cobalt Co(2+) transport
protein (corA); Region: corA; TIGR00383"
/db_xref="CDD:129479"
misc_feature 59009..59887
/gene="corA"
/locus_tag="HPKB_0057"
/note="magnesium/nickel/cobalt transporter CorA;
Provisional; Region: PRK11085; cl00459"
/db_xref="CDD:200659"
gene 59897..60613
/locus_tag="HPKB_0058"
/db_xref="GeneID:12340479"
CDS 59897..60613
/locus_tag="HPKB_0058"
/note="Consensus COG by CONSORF: COG0861"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761607.1"
/db_xref="GI:384887096"
/db_xref="GeneID:12340479"
/translation="MEFLSSLLDALSTTHGIVSLTTLTLLEIILGIDNIIFITVMVYK
LPKHQQNKAMILGLGLAMIARIGLLGSLFFISHLQKPLFVIAGMSFSWRDVVLLVGGV
FLAFKALVELKEQIYPKEKRQEKAFGFFIALIEIMFLDIVFSLDSVITAIGIAKHLEV
MALAIILSVIVMMFFSKIVGDFIERHYRIKTLAFVFLLVVGVFLFLEGLHLHVDKNYL
YAGIGFALLIECLNIFIEKK"
misc_feature 59897..60610
/locus_tag="HPKB_0058"
/note="Membrane protein TerC, possibly involved in
tellurium resistance [Inorganic ion transport and
metabolism]; Region: TerC; COG0861"
/db_xref="CDD:31202"
gene complement(60948..61646)
/locus_tag="HPKB_0059"
/db_xref="GeneID:12340480"
CDS complement(60948..61646)
/locus_tag="HPKB_0059"
/note="Consensus COG by CONSORF: COG0863"
/codon_start=1
/transl_table=11
/product="adenine specific DNA methyltransferase (dpnA)"
/protein_id="YP_005761608.1"
/db_xref="GI:384887097"
/db_xref="GeneID:12340480"
/translation="MIQIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLK
NAKRQGIDFGEWDKNFKLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVV
KDFIQWVKNNPMPRNINRRYVQDTEFALWAVKKKAKWVFNKPKNEKYLRPLILKSPVV
SGLERVKHPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESE
KEYFQIAKKRLNLF"
misc_feature complement(60957..61646)
/locus_tag="HPKB_0059"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature complement(60966..61580)
/locus_tag="HPKB_0059"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(61643..62710)
/locus_tag="HPKB_0060"
/db_xref="GeneID:12340481"
CDS complement(61643..62710)
/locus_tag="HPKB_0060"
/note="Consensus COG by CONSORF: COG0270"
/codon_start=1
/transl_table=11
/product="cytosine specific DNA methyltransferase (DDEM)"
/protein_id="YP_005761609.1"
/db_xref="GI:384887098"
/db_xref="GeneID:12340481"
/translation="MNYKILDLFCGAGGFSTGLECLEEFDALIGLDCDKQALITFENN
HKNAIGVCGDITQTEIKEKVIKLAQTLEINMIIGGPPCQGFSNKGKNLGLKDPRNFLF
LEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKDYGV
PQNRERAFIVGASRFSFDFNLLEPSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSS
YQALMRKNSPKLYNHQATNHSQAALEKLKLINKEQGKECLPKNLHGRQQFKSTWGRLN
WNKVSPTIDTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIG
NAVPPLLALALGKAILKSLRK"
misc_feature complement(61694..62710)
/locus_tag="HPKB_0060"
/note="Site-specific DNA methylase [DNA replication,
recombination, and repair]; Region: Dcm; COG0270"
/db_xref="CDD:30619"
misc_feature complement(<62129..62704)
/locus_tag="HPKB_0060"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
misc_feature complement(order(62468..62470,62474..62476,62543..62554,
62609..62620,62669..62686))
/locus_tag="HPKB_0060"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature complement(order(62213..62215,62219..62221,62342..62347,
62351..62353,62417..62419,62435..62437,62444..62455,
62462..62467,62474..62476))
/locus_tag="HPKB_0060"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature complement(order(62213..62215,62219..62221,62345..62347,
62351..62353,62453..62455,62465..62467,62474..62476))
/locus_tag="HPKB_0060"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
misc_feature complement(61694..>61936)
/locus_tag="HPKB_0060"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(62707..63939)
/locus_tag="HPKB_0061"
/db_xref="GeneID:12340482"
CDS complement(62707..63939)
/locus_tag="HPKB_0061"
/note="Consensus COG by CONSORF: COG0270. Candidate starts
by CONSORF: 63942,63939"
/codon_start=1
/transl_table=11
/product="restriction endonuclease"
/protein_id="YP_005761610.1"
/db_xref="GI:384887099"
/db_xref="GeneID:12340482"
/translation="MFVSRFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFICGY
EESKAQVLSALNTLSAHQIWRFNQENDTKIKGTFVFILENDLHLDENSFYKKLLNSLI
DNDFFNRSRSMTPNQRLFLSGFFASRGSIDTTRNFLTLDYFFHSPLEFKKFHYLIDFF
NIPSEALNFNFRELQPEYTQGINQRNAQFRIYLDWYSHHIGLFNPYKARIAEHVFKTT
LVRDGIYGIYYKLRDQPKTGYRGNSFTERAHFYLKSVYQQDLDDKNIEKLREQLGFIQ
KSEEFRRDSKIINFYRISTPNVCSACCGDYDIKERSFISLPLYKITQKPDSYYTEIHH
VISLGKDQELDVLANLAKLCPACHRALKKGASEEGFQKSLIRNILNRNKDNLEFAQLR
FETDDLSTLVNRIHESLK"
misc_feature complement(62860..62964)
/locus_tag="HPKB_0061"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cl00083"
/db_xref="CDD:213079"
gene complement(64167..65666)
/gene="putP"
/locus_tag="HPKB_0062"
/db_xref="GeneID:12340483"
CDS complement(64167..65666)
/gene="putP"
/locus_tag="HPKB_0062"
/note="Consensus COG by CONSORF: COG0591"
/codon_start=1
/transl_table=11
/product="sodium/proline symporter"
/protein_id="YP_005761611.1"
/db_xref="GI:384887100"
/db_xref="GeneID:12340483"
/translation="MGHVVLSTPIVTMFVAYSLLMLYIGFYFYKQNETTEDYFLGDRS
MGPIISALSAGASDMSGWLLMGLPGALYVGGLINSHIAIGLSLGALINWVFVAKRLRI
YTSVIANSITISDYFETRFSDDRHILRLISAFVILIFFIFYISSGLVSGAKLFEATFG
IQYTYALSIGTLIIVSYTFLGGYRAVCWTDLIQGLLMMSALIVVPVVMIIHLGGIGEG
IKIIREIKPENLSFLQGSSVVAIISSLAWGLGYFGQPHILVRFMSIRSIKDVPKATTI
GISWMVISLIGACAMGLLGVAYAHKFDLSLEDPEKIFIVMSQLLFNPWITGILLSAIL
AAVMSTASSQLLVSSSTIAEDFYATIFNKNAPQKLVMVISRLSVLGVACIAFFISTDR
NASILSIVSYAWAGFGASFGSVILFSLFWSRMTRVGAIAGMLSGASTVILYDKFGKSF
LDIYEIVPGFIVASIAIVVFSLFSSVRAGTKEAFETMLKEIKEIESLKY"
misc_feature complement(64245..65642)
/gene="putP"
/locus_tag="HPKB_0062"
/note="Predicted symporter [General function prediction
only]; Region: DhlC; COG4147"
/db_xref="CDD:33899"
misc_feature complement(64248..65636)
/gene="putP"
/locus_tag="HPKB_0062"
/note="Na(+)/proline cotransporter PutP and related
proteins; solute binding domain; Region: SLC5sbd_PutP;
cd11475"
/db_xref="CDD:212045"
misc_feature complement(order(64647..64652,64659..64661,65490..65492,
65499..65501))
/gene="putP"
/locus_tag="HPKB_0062"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212045"
gene complement(65693..69250)
/locus_tag="HPKB_0063"
/db_xref="GeneID:12340484"
CDS complement(65693..69250)
/locus_tag="HPKB_0063"
/codon_start=1
/transl_table=11
/product="NAD-dependent aldehyde dehydrogenase"
/protein_id="YP_005761612.1"
/db_xref="GI:384887101"
/db_xref="GeneID:12340484"
/translation="MQKIIDDSLELAKKLQDSISNHLSEQEKAFHSKMQKLLNNPENK
VMLIELMDRSFRCLDNKARFEMIEHVLDKYKSREIFSSFEKLLLMGFLSFGKMLPDMS
VPFFVNKIRSDTKAMVLDQEESRLKERILKRKNEKIILNVNFIGEEVLGEEEASARFE
KYSQALKSNYIQYISIKITTIFSQINILDFEYSKKEIVKRLDALYALALEEEKKQGMP
KFINLDMEEFRDLELTVESFMESIAKFDLNAGIVLQAYIPDSYEYLKKLHAFSKERVL
KGLKPIKIRFVKGANMESEETIASMKDWALPTFSNKQDTDSNYNKMLDFVLEGDNYKY
IHIGAASHNIFEIAYVYTRIHALNDPVVLEHFSFEMLEGMSLQASQELKEMHKLILYA
PVCDEAHFNNAIAYLVRRLDENTSSDNFMKAFFNLKVGTSEWKDQEQRFLNSLKGIAT
LDNATHRTQDRNAKQSGHTTYPNHSFKNESDTDFILKANREWAKKVREKMHNAPILEL
YPEMDGRFEDPNLTPLEVFDKIHHRKIASVHLADKGAILKALEVAKSDKSRFSQKSFT
EIHALMSQTAQLFRERRGDLIGISALEVGKTFAETDAEVSEAIDFLEFYPYSLRVLQE
QNKKTKFTPKGVGVVIAPWNFPVGISVGTIAAPLAAGNRVIYKPSSLSSVTGYKLCEC
FWDAGVPRDALIYLPSKGSDISEHLLKDESIKFAILTGGEDTAYKMLEANPTLALSAE
TGGKNATIVSKMADRDQAIKNVIHSAFSNSGQKCSATSLLVLEKEVYEDENFKKTLID
ATLSLSVGDPFDFKNKIGTLADKPNEKVIKAIGELKSYENYEIPVSFVNDNPYLMKPS
IKYGTKKGDFTHQTELFTPILSVMEAQDLDEAIDIVNSTGYGLTSALESLDEREWEYY
LERIEAGNIYINKPTTGAIVLRQPFGGVKKSAVGFGRKVGIFNYITQFVNIHQEEEDE
NALKNPLSEALEGLIQKGYDEHTHELKRAIFMAKSYAYHYKHEFSQAKDYVKIRGEDN
LFSYTKVKSVGYRITEKDTLSDMLGVALACLISQIPLTLSTENERANKDLTFFLECLK
ALQANAPIVYESLQKFSEKLNAFNRVRYLKSDLDLLHEQASRLGIVLATAKPCLNGRF
ELLYYHLERSVSISYHRYGNLGSRVLRQPTCHKSCCAEK"
misc_feature complement(67967..68992)
/locus_tag="HPKB_0063"
/note="Proline dehydrogenase; Region: Pro_dh; pfam01619"
/db_xref="CDD:201891"
misc_feature complement(66311..67834)
/locus_tag="HPKB_0063"
/note="Delta(1)-pyrroline-5-carboxylate dehydrogenase,
PutA; Region: ALDH_PutA-P5CDH; cd07125"
/db_xref="CDD:143443"
misc_feature complement(66356..67705)
/locus_tag="HPKB_0063"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature complement(order(66434..66436,66479..66481,66926..66937,
67031..67033,67316..67321,67430..67432))
/locus_tag="HPKB_0063"
/note="Glutamate binding site [chemical binding]; other
site"
/db_xref="CDD:143443"
misc_feature complement(order(67079..67081,67088..67090,67097..67099,
67151..67153,67241..67246,67250..67252,67328..67333))
/locus_tag="HPKB_0063"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:143443"
misc_feature complement(order(66929..66931,66938..66940,67031..67033,
67319..67321))
/locus_tag="HPKB_0063"
/note="catalytic residues [active]"
/db_xref="CDD:143443"
gene 69568..69777
/locus_tag="HPKB_0064"
/db_xref="GeneID:12340485"
CDS 69568..69777
/locus_tag="HPKB_0064"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761613.1"
/db_xref="GI:384887102"
/db_xref="GeneID:12340485"
/translation="MKTIKNGIMIGTLGALLLSGCSSFDTQRFACLPKDHSLKDASTK
KEAQYTPKGFFDPYSSSLNHWDSTF"
gene 69885..70556
/locus_tag="HPKB_0065"
/db_xref="GeneID:12340486"
CDS 69885..70556
/locus_tag="HPKB_0065"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761614.1"
/db_xref="GI:384887103"
/db_xref="GeneID:12340486"
/translation="MSGAHIVENTNTEKNTNISNTTASTPPPHNNEESLNNDLKDLTD
RFKKLEDKLEDLEPLIKISRCIGFFFRKSSNDTQENSKDAQKKEEALKGVKEEINKLK
EENTALTIDKDNLTKANTDLIDKNKALTTEKENLTTDLSNAKNQVIQAKEEKDKLAEK
NKELDSQVGLLKEQIKSLEQSQQALKNEKAELLKDKDNLTKANAELKRENDKLNHQII
TLTKE"
misc_feature <70149..70451
/locus_tag="HPKB_0065"
/note="SH3 domain protein; Region: SH3_and_anchor;
TIGR04211"
/db_xref="CDD:211934"
gene 70584..70922
/locus_tag="HPKB_0066"
/db_xref="GeneID:12340487"
CDS 70584..70922
/locus_tag="HPKB_0066"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761615.1"
/db_xref="GI:384887104"
/db_xref="GeneID:12340487"
/translation="MQDAHGSLKELCANSEKDNQHLTDKLKKLESAQKNLENSNDQLL
QAREKITKEKIELERKMARLKGLEATDKSELDLQNRRFKSTIEDLKRQNRKLEEENIA
LKERVDGLKE"
misc_feature <70602..70907
/locus_tag="HPKB_0066"
/note="SH3 domain protein; Region: SH3_and_anchor;
TIGR04211"
/db_xref="CDD:211934"
gene 71017..72450
/locus_tag="HPKB_0067"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340488"
gene 72963..73274
/locus_tag="HPKB_0070"
/db_xref="GeneID:12340489"
CDS 72963..73274
/locus_tag="HPKB_0070"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761616.1"
/db_xref="GI:384887105"
/db_xref="GeneID:12340489"
/translation="MGGYVKPTCKTGVAFGLLESRNKPNGIEMPSIDSNPVFKYDLGI
ERERKFHTRISRDSLKPNEYQIFQTKEEWGGFDGVEIRYSDKPLANTNTLDIEDTQLI
L"
gene 73390..73776
/locus_tag="HPKB_0071"
/db_xref="GeneID:12340490"
CDS 73390..73776
/locus_tag="HPKB_0071"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761617.1"
/db_xref="GI:384887106"
/db_xref="GeneID:12340490"
/translation="MMTKNAYAFVVIEESVMVFKHAKDEGLIPITEGFVPLKEGFLKS
FKERCNLEFLENLDLLFLYDYPFSSEVFSLCKELKNSIWDRKLVVALVEALEGFKDWN
LSLQIEDKRSNSSWVMAPKNCSPTLI"
gene 73977..74237
/locus_tag="HPKB_0072"
/db_xref="GeneID:12340491"
CDS 73977..74237
/locus_tag="HPKB_0072"
/note="Consensus COG by CONSORF: COG4842"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761618.1"
/db_xref="GI:384887107"
/db_xref="GeneID:12340491"
/translation="MSRVQMDTEEVREFVNHLERFKELLNDEVNGLSSHFNNLDSWQD
ARRDRFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDY"
misc_feature 73983..74207
/locus_tag="HPKB_0072"
/note="Proteins of 100 residues with WXG; Region: WXG100;
cl02005"
/db_xref="CDD:212265"
gene 74247..75743
/locus_tag="HPKB_0073"
/db_xref="GeneID:12340492"
CDS 74247..75743
/locus_tag="HPKB_0073"
/note="Consensus COG by CONSORF: COG0457"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761619.1"
/db_xref="GI:384887108"
/db_xref="GeneID:12340492"
/translation="MAEWKTDTEEVRQIVKACRDFKRSLQEEKCAQFIKNLDGYARKE
TLLERRKIELQLQDAREGLRRAKKDRGGFWSSVLEGVRDVCSMVSRVIPPVELGVKAC
DKALNYMKENTEKYEKNVKLLEQALEIYSIQAKASRELVEGAWEGVKKALNFYTDKHQ
EFIKRLNKVSEAIDNEYNIAPPEILKERDFESPTIVYRPKKSVYDEHLKDLREDFSFS
LYADLKDRFQRSSSGGLDHAKAPRDHGKDLMSGAYSFDGGLSLAKKNSVKNFKEALKD
FGEKIKESPNDLNAMNEAFNYLKTELERVSGDECLKGLRENLDSLHADLKDKIHHNAL
SSDDLERMASFREQEFEKNLEDLMPSSLGVSSYDESLSLAKKHCVKNCKKALQDFAEK
IKESPNDLNAVNEAFDNLETELERATENLSQKIAPILERYENDKHHALGYGEFLEKEK
EGFMVDEQNPYPEEVRFNELRLAEFDSVFSAIVPLEDLDKTTCAHHMP"
misc_feature <75045..>75620
/locus_tag="HPKB_0073"
/note="chromosome segregation protein; Provisional;
Region: PRK03918"
/db_xref="CDD:179675"
gene 76356..76706
/locus_tag="HPKB_0074"
/db_xref="GeneID:12340493"
CDS 76356..76706
/locus_tag="HPKB_0074"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761620.1"
/db_xref="GI:384887109"
/db_xref="GeneID:12340493"
/translation="MFSHEVYLEGCTLELKKICDDFEKNAMQDDLGQKLRSEVLEDML
KIAHDLENLEQETQYQRRRIDEQIEEAQSLMKKIDMNFHSSSEIDKLVREAKEHEKEA
NRRYDEYLKSKDKE"
gene 76703..79139
/locus_tag="HPKB_0075"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340494"
gene complement(79218..80015)
/locus_tag="HPKB_0079"
/db_xref="GeneID:12340495"
CDS complement(79218..80015)
/locus_tag="HPKB_0079"
/note="Consensus COG by CONSORF: COG0829. Candidate starts
by CONSORF: 80048,80018,80015"
/codon_start=1
/transl_table=11
/product="urease accessory protein (ureH)"
/protein_id="YP_005761621.1"
/db_xref="GI:384887110"
/db_xref="GeneID:12340495"
/translation="MNTYAQESKLRLKTKIGADGRCVIEDNFFTPPFKLMAPFYPKDD
LAEIMLLAVSPGMMRGDAQDMQLNIGPNCKLRITSQSFEKIHNTEDGFASRDMHIVVG
ENAFLDFAPFPLIPFENAHFKGNTTISLHSSSQLLYSEIIVAGRVARNELFQFNRLHT
KISILQDEKPIYYDNTILDPKTTDLNSMCMFDGYTHYLNLVLVNCPIELSGVREWIEE
SQGVDGAVSEIASSHLCVKALAKGSEPLLHLREKIARSITQTITQKI"
misc_feature complement(79239..80015)
/locus_tag="HPKB_0079"
/note="Urease accessory protein UreH [Posttranslational
modification, protein turnover, chaperones]; Region: UreH;
COG0829"
/db_xref="CDD:31171"
gene complement(80015..80614)
/locus_tag="HPKB_0080"
/db_xref="GeneID:12340496"
CDS complement(80015..80614)
/locus_tag="HPKB_0080"
/note="Consensus COG by CONSORF: COG0378"
/codon_start=1
/transl_table=11
/product="urease accessory protein UreG"
/protein_id="YP_005761622.1"
/db_xref="GI:384887111"
/db_xref="GeneID:12340496"
/translation="MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDA
EFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGD
NLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVGADLKVM
ERDSKKMRGEKPFIFTNIRAKEGLDDVIAWIKRNALLED"
misc_feature complement(80042..80602)
/locus_tag="HPKB_0080"
/note="Rat sarcoma (Ras)-like superfamily of small
guanosine triphosphatases (GTPases); Region:
Ras_like_GTPase; cd00882"
/db_xref="CDD:206648"
misc_feature complement(80570..80593)
/locus_tag="HPKB_0080"
/note="G1 box; other site"
/db_xref="CDD:206648"
misc_feature complement(order(80078..80086,80171..80173,80177..80182,
80420..80422,80567..80587))
/locus_tag="HPKB_0080"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206648"
misc_feature complement(80492..80494)
/locus_tag="HPKB_0080"
/note="G2 box; other site"
/db_xref="CDD:206648"
misc_feature complement(80474..80482)
/locus_tag="HPKB_0080"
/note="Switch I region; other site"
/db_xref="CDD:206648"
misc_feature complement(80420..80431)
/locus_tag="HPKB_0080"
/note="G3 box; other site"
/db_xref="CDD:206648"
misc_feature complement(order(80333..80338,80420..80425))
/locus_tag="HPKB_0080"
/note="Switch II region; other site"
/db_xref="CDD:206648"
misc_feature complement(80171..80182)
/locus_tag="HPKB_0080"
/note="G4 box; other site"
/db_xref="CDD:206648"
misc_feature complement(80078..80086)
/locus_tag="HPKB_0080"
/note="G5 box; other site"
/db_xref="CDD:206648"
gene complement(80643..81323)
/gene="ureF"
/locus_tag="HPKB_0081"
/db_xref="GeneID:12340497"
CDS complement(80643..81323)
/gene="ureF"
/locus_tag="HPKB_0081"
/note="Consensus COG by CONSORF: COG0830. Candidate starts
by CONSORF: 81395,81374,81368,81323"
/codon_start=1
/transl_table=11
/product="urease accessory protein UreF"
/protein_id="YP_005761623.1"
/db_xref="GI:384887112"
/db_xref="GeneID:12340497"
/translation="MDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVTNKESALEY
LKANLSSQFLYTEMLSLKLTYESALQQDLKKILGVEEIITLSTSPMELRLANQKLGNR
FIKTLQAMNELNMGEFFNAYAQKTKDPTHATSYGVFAASLDIELKKALRHYLYAQTSN
MVINCVKSVPLSQNDGQKILLSLQSPFNQLIERTLELDESHLCAASVQNDIKAMQHES
LYSRLYMS"
misc_feature complement(80646..81323)
/gene="ureF"
/locus_tag="HPKB_0081"
/note="Urease accessory protein UreF [Posttranslational
modification, protein turnover, chaperones]; Region: UreF;
COG0830"
/db_xref="CDD:31172"
misc_feature complement(80766..81224)
/gene="ureF"
/locus_tag="HPKB_0081"
/note="UreF; Region: UreF; pfam01730"
/db_xref="CDD:201941"
gene complement(81425..81937)
/gene="ureE"
/locus_tag="HPKB_0082"
/db_xref="GeneID:12340498"
CDS complement(81425..81937)
/gene="ureE"
/locus_tag="HPKB_0082"
/note="Consensus COG by CONSORF: COG2371"
/codon_start=1
/transl_table=11
/product="urease accessory protein"
/protein_id="YP_005761624.1"
/db_xref="GI:384887113"
/db_xref="GeneID:12340498"
/translation="MIIERLTGNLRDLNPLDFSVDYVDLEWFETRKKIARFKTRQGKD
IAIRLKDAPKLGLSQGDILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRH
AALYYGDSQFEFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEPNFKVS
LASDFKVVMK"
misc_feature complement(81482..81937)
/gene="ureE"
/locus_tag="HPKB_0082"
/note="urease accessory protein UreE; Provisional; Region:
ureE; PRK13261"
/db_xref="CDD:183927"
misc_feature complement(81518..81937)
/gene="ureE"
/locus_tag="HPKB_0082"
/note="UreE urease accessory protein. UreE is a
metallochaperone assisting the insertion of a Ni2+ ion in
the active site of urease, an important step in the in
vivo assembly of urease, an enzyme that hydrolyses urea
into ammonia and carbamic acid. The...; Region: UreE;
cd00571"
/db_xref="CDD:29664"
misc_feature complement(order(81611..81613,81629..81634,81638..81643,
81647..81655))
/gene="ureE"
/locus_tag="HPKB_0082"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29664"
misc_feature complement(order(81581..81583,81632..81634))
/gene="ureE"
/locus_tag="HPKB_0082"
/note="catalytic residues [active]"
/db_xref="CDD:29664"
gene complement(81939..82526)
/gene="ureI"
/locus_tag="HPKB_0083"
/db_xref="GeneID:12340499"
CDS complement(81939..82526)
/gene="ureI"
/locus_tag="HPKB_0083"
/note="Consensus COG by CONSORF: COG1138. Candidate starts
by CONSORF: 82547,82526"
/codon_start=1
/transl_table=11
/product="urease accessory protein / pH-dependent
urea-transporter"
/protein_id="YP_005761625.1"
/db_xref="GI:384887114"
/db_xref="GeneID:12340499"
/translation="MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSIICN
VVVITYSALNPTAPVEGAEDIAQVSHHLTNFYGPATGLLFGFTYLYAAINHTFGLDWR
PYSWYSLFVAINTVPAAILSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIEN
ILKIPLGKFTPWLAIIEGILTAWIPAWLLFIQHWV"
misc_feature complement(81945..82484)
/gene="ureI"
/locus_tag="HPKB_0083"
/note="AmiS/UreI family transporter; Region: AmiS_UreI;
pfam02293"
/db_xref="CDD:216963"
gene complement(82720..84429)
/gene="ureB"
/locus_tag="HPKB_0084"
/db_xref="GeneID:12340500"
CDS complement(82720..84429)
/gene="ureB"
/locus_tag="HPKB_0084"
/note="Consensus COG by CONSORF: COG0804"
/codon_start=1
/transl_table=11
/product="urease B"
/protein_id="YP_005761626.1"
/db_xref="GI:384887115"
/db_xref="GeneID:12340500"
/translation="MKKISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELK
FGGGKTLREGMSQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNK
DTQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGG
TGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGF
KIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTE
GAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKNIKEDVQF
ADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKE
EKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMII
KGGFIALSQMGDANASIPTPQPVYYREMFAHHGKAKYDANITFVSQAAYDKGIKEELG
LERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLF
SIF"
misc_feature complement(82723..84426)
/gene="ureB"
/locus_tag="HPKB_0084"
/note="urease subunit beta; Provisional; Region: ureB;
PRK13985"
/db_xref="CDD:184438"
misc_feature complement(82726..84423)
/gene="ureB"
/locus_tag="HPKB_0084"
/note="Urease alpha-subunit; Urease is a nickel-dependent
metalloenzyme that catalyzes the hydrolysis of urea to
form ammonia and carbon dioxide. Nickel-dependent ureases
are found in bacteria, fungi and plants. Their primary
role is to allow the use of...; Region: Urease_alpha;
cd00375"
/db_xref="CDD:30031"
misc_feature complement(order(82726..82740,83002..83004,83017..83025,
83029..83046,83110..83112,84055..84057,84112..84126,
84265..84273,84280..84282,84298..84300,84304..84315,
84358..84360,84364..84366,84370..84375,84391..84393,
84412..84414,84418..84423))
/gene="ureB"
/locus_tag="HPKB_0084"
/note="subunit interactions [polypeptide binding]; other
site"
/db_xref="CDD:30031"
misc_feature complement(order(83332..83337,83344..83346,83464..83466,
83593..83595,83608..83610,83686..83688,83767..83769,
83773..83775,83923..83925,84016..84018,84022..84024))
/gene="ureB"
/locus_tag="HPKB_0084"
/note="active site"
/db_xref="CDD:30031"
misc_feature complement(83431..83481)
/gene="ureB"
/locus_tag="HPKB_0084"
/note="flap region; other site"
/db_xref="CDD:30031"
gene complement(84433..85149)
/locus_tag="HPKB_0085"
/db_xref="GeneID:12340501"
CDS complement(84433..85149)
/locus_tag="HPKB_0085"
/codon_start=1
/transl_table=11
/product="urease subunit alpha"
/protein_id="YP_005761627.1"
/db_xref="GI:384887116"
/db_xref="GeneID:12340501"
/translation="MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIM
EEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPIEA
NGKLVPGELFLKNEDITINEGKKAISVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREK
TFGKRLDIASGTAVRFEPGEEKSVELIDIGGSRRIFGFNALVDRQADNESKKIALHRA
KERGFHGAKSDDNYVKTIKE"
misc_feature complement(84475..85149)
/locus_tag="HPKB_0085"
/note="urease subunit alpha; Provisional; Region:
PRK13986"
/db_xref="CDD:184439"
misc_feature complement(84850..85140)
/locus_tag="HPKB_0085"
/note="Urease gamma-subunit; Urease is a nickel-dependent
metalloenzyme that catalyzes the hydrolysis of urea to
form ammonia and carbon dioxide. Nickel-dependent ureases
are found in bacteria, archaea, fungi and plants. Their
primary role is to allow the use...; Region: Urease_gamma;
cd00390"
/db_xref="CDD:63883"
misc_feature complement(order(84898..84900,84904..84906,84919..84921,
84934..84936,85030..85032,85051..85059,85081..85083,
85093..85095,85120..85125))
/locus_tag="HPKB_0085"
/note="alpha-gamma subunit interface [polypeptide
binding]; other site"
/db_xref="CDD:63883"
misc_feature complement(84934..84936)
/locus_tag="HPKB_0085"
/note="beta-gamma subunit interface [polypeptide binding];
other site"
/db_xref="CDD:63883"
misc_feature complement(84541..84834)
/locus_tag="HPKB_0085"
/note="Urease beta-subunit; Urease is a nickel-dependent
metalloenzyme that catalyzes the hydrolysis of urea to
form ammonia and carbon dioxide. Nickel-dependent ureases
are found in bacteria, archaea, fungi and plants. Their
primary role is to allow the use of...; Region:
Urease_beta; cd00407"
/db_xref="CDD:73201"
misc_feature complement(84832..84834)
/locus_tag="HPKB_0085"
/note="gamma-beta subunit interface [polypeptide binding];
other site"
/db_xref="CDD:73201"
misc_feature complement(order(84556..84564,84568..84582,84637..84645,
84649..84651,84655..84657,84718..84720,84787..84804,
84808..84831))
/locus_tag="HPKB_0085"
/note="alpha-beta subunit interface [polypeptide binding];
other site"
/db_xref="CDD:73201"
gene complement(85400..85475)
/gene="trnV"
/locus_tag="HPKB_0086"
/db_xref="GeneID:12340502"
tRNA complement(85400..85475)
/gene="trnV"
/locus_tag="HPKB_0086"
/product="tRNA-Val"
/db_xref="GeneID:12340502"
gene complement(85496..85969)
/gene="lspA"
/locus_tag="HPKB_0087"
/db_xref="GeneID:12340503"
CDS complement(85496..85969)
/gene="lspA"
/locus_tag="HPKB_0087"
/note="Consensus COG by CONSORF: COG0597"
/codon_start=1
/transl_table=11
/product="lipoprotein signal peptidase"
/protein_id="YP_005761628.1"
/db_xref="GI:384887117"
/db_xref="GeneID:12340503"
/translation="MLKTTKKSLLIFIGVFFLIFGADQAIKYAILEGFRYESLMIDIV
LVFNKGVAFSLLSFLEGGLKYLQILLILGLFIYLMRQKELFKNHAIEFGMVFGAGVSN
VLDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVGVLLLRQFFFKQKQNKIKA"
misc_feature complement(85550..85906)
/gene="lspA"
/locus_tag="HPKB_0087"
/note="lipoprotein signal peptidase; Reviewed; Region:
lspA; PRK00376"
/db_xref="CDD:178992"
gene complement(85963..87300)
/locus_tag="HPKB_0088"
/db_xref="GeneID:12340504"
CDS complement(85963..87300)
/locus_tag="HPKB_0088"
/note="Consensus COG by CONSORF: COG1109"
/codon_start=1
/transl_table=11
/product="phosphoglucosamine mutase"
/protein_id="YP_005761629.1"
/db_xref="GI:384887118"
/db_xref="GeneID:12340504"
/translation="MKIFGTDGVRGKAGVKLTPMFVMRLGVAAGLYFKKHSQTNKILI
GKDTRKSGYMVENALVSALTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
FEDNGIKFFNSYGYKLKEEEERAIEEIFHDEGLLHSSYKVGESVGSAKRIDDVIGRYI
VHLKHSFPKHLNLQSLRIVLDTANGAAYKVAPVVFSELGADVLVINDEPNGCNINEQC
GALHPNQLSQEVKKYRADLGFAFDGDADRLVVVDNLGNIVHGDKLLGVLGVYQKSKNA
LSSQAIVATSMSNLALKEYLKSQDLELKHCAIGDKFVSECMRLNKANFGGEQSGHIIF
SDYAKTGDGLVCALQVSALVLESKQVSSVALNPFELYPQSLVNLNVQKKPPLESLKGY
SALLKELDKLEIRHLIRYSGTENKLRILLEAKDEKLLESKMQELKEFFEGHLC"
misc_feature complement(85966..87300)
/locus_tag="HPKB_0088"
/note="phosphoglucosamine mutase; Provisional; Region:
glmM; PRK14324"
/db_xref="CDD:184621"
misc_feature complement(85993..87294)
/locus_tag="HPKB_0088"
/note="GlmM is a bacterial phosphoglucosamine mutase
(PNGM) that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in the
biosynthetic pathway of...; Region: GlmM; cd05802"
/db_xref="CDD:100095"
misc_feature complement(order(86047..86049,86062..86070,86074..86076,
86308..86310,86314..86316,86320..86322,86371..86379,
86440..86442,86560..86565,86569..86571,86575..86577,
86974..86976,86998..87006,87271..87273,87280..87282,
87286..87288))
/locus_tag="HPKB_0088"
/note="active site"
/db_xref="CDD:100095"
misc_feature complement(order(86047..86049,86062..86070,86074..86076,
86308..86310,86314..86316,86320..86322,86371..86373,
86377..86379,86440..86442,86560..86562,87004..87006,
87280..87282))
/locus_tag="HPKB_0088"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100095"
misc_feature complement(order(86563..86565,86569..86571,86575..86577,
87004..87006))
/locus_tag="HPKB_0088"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100095"
gene 87390..87659
/gene="rpsT"
/locus_tag="HPKB_0089"
/db_xref="GeneID:12340505"
CDS 87390..87659
/gene="rpsT"
/locus_tag="HPKB_0089"
/note="Consensus COG by CONSORF: COG0268"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="YP_005761630.1"
/db_xref="GI:384887119"
/db_xref="GeneID:12340505"
/translation="MANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAINDV
AKAQERLKIANKELHKFVSKGILKKNTASRKVSRLNASVKKIALA"
misc_feature 87390..87650
/gene="rpsT"
/locus_tag="HPKB_0089"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene 87776..88834
/gene="prfA"
/locus_tag="HPKB_0090"
/db_xref="GeneID:12340506"
CDS 87776..88834
/gene="prfA"
/locus_tag="HPKB_0090"
/note="Consensus COG by CONSORF: COG0216"
/codon_start=1
/transl_table=11
/product="peptide chain release factor RF-1"
/protein_id="YP_005761631.1"
/db_xref="GI:384887120"
/db_xref="GeneID:12340506"
/translation="MSILAEKLSSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSI
EEISITSKEYLSVLENIKENKELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPK
DPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKE
IIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSLNPS
DLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARL
YEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSG
NLDEVINPLIAHAQSQFE"
misc_feature 87776..88825
/gene="prfA"
/locus_tag="HPKB_0090"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:179074"
misc_feature <88058..88306
/gene="prfA"
/locus_tag="HPKB_0090"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature 88391..88732
/gene="prfA"
/locus_tag="HPKB_0090"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 89512..90246
/locus_tag="HPKB_0091"
/note="partial gene fragment"
/pseudo
/db_xref="GeneID:12340507"
gene 90271..91089
/locus_tag="HPKB_0092"
/db_xref="GeneID:12340508"
CDS 90271..91089
/locus_tag="HPKB_0092"
/note="Consensus COG by CONSORF: COG5295"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761632.1"
/db_xref="GI:384887121"
/db_xref="GeneID:12340508"
/translation="MNSSTDLSSVIPNAQGLSSAFSALESAQNTLKGYLDSSSATIGQ
LTNGSNAVVGALDKAINQVDTALADFVTTDTQKTQAVTLTTTGSSANSTTTDAIAFLS
ALKTNLMAQKAAFMNVHKNIQTAVAQAQATYTPSVMNTNNYGQMYGVDAMAGYKWFFG
QTKRFGFRTYGYYSYNHANLSFVGSKLGIMDGASQANNFAYGVGFDALYNFYENKEGY
NTAGLFLCFGLGGGFVHRARRELLEISDANLQQHRRLFSEHEHKLFPNACGIWL"
misc_feature 90718..>90915
/locus_tag="HPKB_0092"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 91482..93245
/locus_tag="HPKB_0093"
/db_xref="GeneID:12340509"
CDS 91482..93245
/locus_tag="HPKB_0093"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761633.1"
/db_xref="GI:384887122"
/db_xref="GeneID:12340509"
/translation="MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGG
YKSSTTEWGATALNYINAANGDAKKFSALVEKMRFNSGILGNLRVHVHLRQALKLQKN
LKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQ
SPYYRSNNYYNSYYSPYYGMYGMYGMGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQD
YLMLENYMYAIDQEEILDHDASVNQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSK
GIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAITSQAKELNHLVGQIKEMKQ
DGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLS
HSSDVVGNYLDGSLKIDGDDRDDLNDAMNNPMQQPAQQMPTNNMGNTHANDSKDQGGN
ALINPNSATNTDDTHTDDTHTDTNTTNDTSTTDTPTDDKDAGGMNNTGDMNNTDTGNT
DTGNTDTGNTDDMSNMNNGNDDMGNANDDMSNGNDMGDDMNNANDMNDDMGNSNDDMG
DMGDMNDDMGGDMGDMGDMGN"
gene complement(93670..95691)
/locus_tag="HPKB_0094"
/db_xref="GeneID:12340510"
CDS complement(93670..95691)
/locus_tag="HPKB_0094"
/note="Consensus COG by CONSORF: COG0840"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_005761634.1"
/db_xref="GI:384887123"
/db_xref="GeneID:12340510"
/translation="MKSTRIGSKIVMMVCAVVIAISAVMGVIISYKVESVLQSQATEL
LQKKAQLVSFKIQSIMKRIFIGANTLEKFLSDENSAINDTLKRRMLSEFLLANPHVLL
ISAIYTNNNERIITAMKMDSKIAYPNTVLNENMTNQIHSLKDTTHSDPYYKEVNGDKI
YGMDITLPLMGKNQKTIGALNFFLNIDAFYTDVVGEKKSNTFLMGKDGRLLINPNRKI
QDKILSAINPYKRVAKAVEYYNQNEAGTLSYHSLSGNTETFLAIQPFDFFEEKGNSGN
QWRWAIGKYVNKSLVFKEATNTKYIIITTLILGVLVLALLVFIIVSNLITKRISRVNN
TLNDFFNLLNNPKNNHAISLTPPSAYDEIGQMQASINENILKTQESIQADNQAIQNSI
EVTNHVENGDFTQEIACVPKNKDLQALKNTINSIIQYFRNQIGANIEALNNALEHYKN
LDFTHHIQNPKANMEKALNTLGQEISSMLKASLGFANALNHESKDLKTCVDNLTKTAH
KQERSLKNTTQSLEEITNIITTIDSKSQEMISQGEDIKSVVDMIREIADQTNLLALNA
AIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSIADNAESIKMQNK
GVENIHNSINALQQDVQDNLTIANHSLQVSTKIDGISQDILEDVSKKKF"
misc_feature complement(93694..94194)
/locus_tag="HPKB_0094"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(93694..93696,93700..93705,93712..93717,
93721..93726,93733..93735,93742..93747,93754..93756,
93763..93768,93775..93780,93784..93789,93796..93798,
93805..93810,93817..93819,93835..93840,93877..93882,
93889..93894,93898..93903,93910..93915,93922..93924,
93931..93936,93943..93945,93952..93954,93964..93966,
93985..93987,93994..93996,94006..94008,94015..94020,
94027..94029,94036..94038,94045..94050,94057..94062,
94069..94071,94078..94083,94087..94089,94099..94104,
94108..94113,94120..94122,94129..94134,94141..94146,
94153..94155,94162..94167,94174..94176,94183..94188,
94192..94194))
/locus_tag="HPKB_0094"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(93919..94020)
/locus_tag="HPKB_0094"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(95846..96235)
/gene="rpsI"
/locus_tag="HPKB_0095"
/db_xref="GeneID:12340511"
CDS complement(95846..96235)
/gene="rpsI"
/locus_tag="HPKB_0095"
/note="Consensus COG by CONSORF: COG0103"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="YP_005761635.1"
/db_xref="GI:384887124"
/db_xref="GeneID:12340511"
/translation="MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIK
MKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAVLKPKGL
LTRDSRVVERKKYGKRKARRSPQFSKR"
misc_feature complement(95849..96229)
/gene="rpsI"
/locus_tag="HPKB_0095"
/note="30S ribosomal protein S9; Reviewed; Region: rpsI;
PRK00132"
/db_xref="CDD:178888"
gene complement(96232..96657)
/gene="rplM"
/locus_tag="HPKB_0096"
/db_xref="GeneID:12340512"
CDS complement(96232..96657)
/gene="rplM"
/locus_tag="HPKB_0096"
/note="Consensus COG by CONSORF: COG0102"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L13"
/protein_id="YP_005761636.1"
/db_xref="GI:384887125"
/db_xref="GeneID:12340512"
/translation="MTKTAKVNDIVRDWVVLDAKDKVFGRLITEIAVLLRGKHRPFYT
PNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHL
AVRGMLPKTKLGKAMIKKLKVYRDDKHPHTAQTSKKDAK"
misc_feature complement(96277..96618)
/gene="rplM"
/locus_tag="HPKB_0096"
/note="Ribosomal protein L13. Protein L13, a large
ribosomal subunit protein, is one of five proteins
required for an early folding intermediate of 23S rRNA in
the assembly of the large subunit. L13 is situated on the
bottom of the large subunit, near the...; Region:
Ribosomal_L13; cd00392"
/db_xref="CDD:238230"
misc_feature complement(order(96289..96294,96301..96303,96313..96315,
96319..96321,96325..96333,96337..96345,96349..96357,
96373..96378,96460..96462,96466..96468,96550..96552,
96562..96564,96571..96573,96580..96585,96589..96591))
/gene="rplM"
/locus_tag="HPKB_0096"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238230"
misc_feature complement(96373..96375)
/gene="rplM"
/locus_tag="HPKB_0096"
/note="L3 interface [polypeptide binding]; other site"
/db_xref="CDD:238230"
gene complement(96842..97030)
/locus_tag="HPKB_0097"
/db_xref="GeneID:12340513"
CDS complement(96842..97030)
/locus_tag="HPKB_0097"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761637.1"
/db_xref="GI:384887126"
/db_xref="GeneID:12340513"
/translation="MQKEQEALEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASA
QMSHQIKKIEERLNQEQK"
gene complement(97037..98383)
/locus_tag="HPKB_0098"
/db_xref="GeneID:12340514"
CDS complement(97037..98383)
/locus_tag="HPKB_0098"
/note="Consensus COG by CONSORF: COG0579. Candidate starts
by CONSORF: 98389,98383"
/codon_start=1
/transl_table=11
/product="malate:quinone oxidoreductase"
/protein_id="YP_005761638.1"
/db_xref="GI:384887127"
/db_xref="GeneID:12340514"
/translation="MEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISS
SAKANSQTIHDGSIETNYTPEKAKKVRLSAYKTRRYALNKGLQNEVIFETQKMAIGVG
DEECEFMKKRYESFKEIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDW
STMNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLV
NAGSYALPLAQSMGYGLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDA
IIKGKTRIGPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYV
FKNMVFELPVIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKQKLELGEK
KICTHKGITFNMTPSPGATSCLQNALVDSQEIAAYLGESFELERFYKDLSPEELEN"
misc_feature complement(97040..98383)
/locus_tag="HPKB_0098"
/note="Predicted dehydrogenase [General function
prediction only]; Region: COG0579"
/db_xref="CDD:30924"
misc_feature complement(97061..98380)
/locus_tag="HPKB_0098"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene complement(98443..99807)
/locus_tag="HPKB_0099"
/db_xref="GeneID:12340515"
CDS complement(98443..99807)
/locus_tag="HPKB_0099"
/note="Consensus COG by CONSORF: COG0791. Candidate starts
by CONSORF: 99831,99828,99807"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761639.1"
/db_xref="GI:384887128"
/db_xref="GeneID:12340515"
/translation="MRYFFVVFLFLFVGCMQKDFTLKDLSLPQEASSYLASSQNGGNN
IDPQALRENLKESYLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAF
NDELVKSMDIEHYPSVKIKAVVARDSDVRAVPTNKPFYLSQKGYPFDRYQNSLIFQGT
PVLITHFNTDKTYAHIQSSFVYGWIKVSDLAYMHDKDIELLIHLKDYVMPIKDKIPLY
TDYGDFYTNARVGELFALIPQSQKTPEKPQKKELKAYGFLRDAKGYATLQSVILEEKD
FFVFPKAFTSENMAYFIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQ
SRYANNYVDLSSMKAKEKEDYILKNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWS
VQTQKHFKTLSHKIGGVVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKDFANKTSSP
LKAN"
misc_feature complement(99463..>99747)
/locus_tag="HPKB_0099"
/note="NLPC_P60 stabilising domain, N term; Region:
N_NLPC_P60; pfam12912"
/db_xref="CDD:205143"
misc_feature complement(99247..99396)
/locus_tag="HPKB_0099"
/note="SH3 domain of the SH3b1 type; Region: SH3_6;
pfam12913"
/db_xref="CDD:205144"
misc_feature complement(99085..99228)
/locus_tag="HPKB_0099"
/note="SH3 domain of SH3b2 type; Region: SH3_7; pfam12914"
/db_xref="CDD:205145"
misc_feature complement(98566..>98967)
/locus_tag="HPKB_0099"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature complement(98506..98916)
/locus_tag="HPKB_0099"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene complement(99828..101885)
/gene="rpoD"
/locus_tag="HPKB_0100"
/db_xref="GeneID:12340516"
CDS complement(99828..101885)
/gene="rpoD"
/locus_tag="HPKB_0100"
/note="Consensus COG by CONSORF: COG0568. Candidate starts
by CONSORF: 101924,101912,101897,101885"
/codon_start=1
/transl_table=11
/product="sigma 70 (RpoD)"
/protein_id="YP_005761640.1"
/db_xref="GI:384887129"
/db_xref="GeneID:12340516"
/translation="MKKKANEEKASKRAKQEAKTEATQENKAKENKIKESKIKEAKTK
ESKIKEAKTKESKIKETKAKEPVPVKKLSFNEALEELFANSLSDCVSYESIIQISAKV
PTLAQVKKIKELCQKYQKKLVSSSEYAKKLNAIDKIKKTEEKQKVLDEELEDGYDFLR
EKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLID
FIYAYKDALINRERRVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKVVSEKDR
KRVEKVQESFKALDKAKKEWLKALEAPVDEKEDELVRLLTLAYKRQTLKDRLYDLEPT
SKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKKILANITNMTKEDI
IAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEILEQIKRGKLISDRAKNKM
AKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQ
AISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVK
NVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNE
REKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNY
LRI"
misc_feature complement(99837..101657)
/gene="rpoD"
/locus_tag="HPKB_0100"
/note="RNA polymerase sigma factor RpoD; Validated;
Region: PRK05658"
/db_xref="CDD:180186"
misc_feature complement(101268..101375)
/gene="rpoD"
/locus_tag="HPKB_0100"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature complement(100326..100538)
/gene="rpoD"
/locus_tag="HPKB_0100"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(100068..100301)
/gene="rpoD"
/locus_tag="HPKB_0100"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature complement(99873..100052)
/gene="rpoD"
/locus_tag="HPKB_0100"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(99885..99887,99891..99896,99900..99908,
99912..99917,99921..99923,99951..99956,99987..99989,
100017..100019))
/gene="rpoD"
/locus_tag="HPKB_0100"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(102078..102773)
/locus_tag="HPKB_0101"
/db_xref="GeneID:12340517"
CDS complement(102078..102773)
/locus_tag="HPKB_0101"
/note="Consensus COG by CONSORF: COG0775. Candidate starts
by CONSORF: 102791,102773"
/codon_start=1
/transl_table=11
/product="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase"
/protein_id="YP_005761641.1"
/db_xref="GI:384887130"
/db_xref="GeneID:12340517"
/translation="MVQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNK
EIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLNKDLKINDLLVAIQLVQHD
VDLSAFNHPLGFIPESAIFIETSESLNALAKKVANEQHIALKEGVIASGDQFVHSKER
KEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKANMSFDAFLEKSAQ
TSAKFLKSMVDKL"
misc_feature complement(102081..102764)
/locus_tag="HPKB_0101"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Region: MTA/SAH-Nsdase; TIGR01704"
/db_xref="CDD:130765"
misc_feature complement(102081..102764)
/locus_tag="HPKB_0101"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Validated; Region: PRK05584"
/db_xref="CDD:180148"
gene complement(102784..103713)
/gene="fabD"
/locus_tag="HPKB_0102"
/db_xref="GeneID:12340518"
CDS complement(102784..103713)
/gene="fabD"
/locus_tag="HPKB_0102"
/note="Consensus COG by CONSORF: COG0331"
/codon_start=1
/transl_table=11
/product="malonylcoenzymeA-acyl carrier protein
transacylase"
/protein_id="YP_005761642.1"
/db_xref="GI:384887131"
/db_xref="GeneID:12340518"
/translation="MQYALLFPGQGSQCIGMGKSFYESHTLAKELFERASNALKADMK
KTLFEENELLKESAYTQPAIYLVSYIAYQLLNKQVNGGLKPVFALGHSLGEVSAVSLS
GALDFEKALKLTHQRGKMMQEACANKDASMMVVLGVSEESLLSLCQRTKNVWCANFNG
GMQVVLAGIKDDLKALEPTLKEMGAKRVVFLEMSVASHCPFLEPMTFKFQELLEKSLK
DKFHFEIISNATNEAYHSKAKAVELLSLQLTQPVRYQDCVKSNNNRVDVFFELGCGSV
LKGLNKRLSNKPTISVGDNKGLDEAIEFLEEYV"
misc_feature complement(102805..103713)
/gene="fabD"
/locus_tag="HPKB_0102"
/note="(acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism]; Region: FabD; COG0331"
/db_xref="CDD:30679"
misc_feature complement(102856..103713)
/gene="fabD"
/locus_tag="HPKB_0102"
/note="malonyl CoA-acyl carrier protein transacylase;
Region: fabD; TIGR00128"
/db_xref="CDD:199994"
gene 103845..103936
/gene="trnS"
/locus_tag="HPKB_0103"
/db_xref="GeneID:12340519"
tRNA 103845..103936
/gene="trnS"
/locus_tag="HPKB_0103"
/product="tRNA-Ser"
/db_xref="GeneID:12340519"
gene 104141..104974
/locus_tag="HPKB_0104"
/db_xref="GeneID:12340520"
CDS 104141..104974
/locus_tag="HPKB_0104"
/note="Consensus COG by CONSORF: COG3839"
/codon_start=1
/transl_table=11
/product="type II restriction enzyme R protein (hsdR)"
/protein_id="YP_005761643.1"
/db_xref="GI:384887132"
/db_xref="GeneID:12340520"
/translation="MKNHLPFDIFLQSLKISNRNLGFFTDWQKCLKNKNEISIALNHL
NFLLGKDTKELKGCVKSLFEEYPKAFNVLNILIAVRNKDEVVLDADGNFYPLHSYFEN
DEKVYEFICQTGLEQIFCNRNIKDLNDFVFGIEVGLDSNARKNRSGKAMENHLSSLFF
QAQLNFKEQVDIREFEDLYQAFGDDIKKFDFVVCGKDTTYFIEANFYTISGSKLNEVA
RSYQDLALKFEAFPNYEFIWITDGIGWLDAKSKLQEAYKSVEIYNLSNVNDFISKAQK
W"
misc_feature 104153..104959
/locus_tag="HPKB_0104"
/note="DpnII restriction endonuclease; Region: DpnII;
pfam04556"
/db_xref="CDD:146948"
gene 104968..105801
/locus_tag="HPKB_0105"
/db_xref="GeneID:12340521"
CDS 104968..105801
/locus_tag="HPKB_0105"
/note="Consensus COG by CONSORF: COG0863"
/codon_start=1
/transl_table=11
/product="typeII adenine methyltransferase"
/protein_id="YP_005761644.1"
/db_xref="GI:384887133"
/db_xref="GeneID:12340521"
/translation="MVIAPSNEIARPIFKSQDQLFTLYQGDCNEILPQFENQFDLIFA
DPPYFLSNDGLSIQSGKIVSVNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLI
SGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK
HVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGKHPTQKPLALLVRLLLMASDGNSL
IGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKISMDRKLELDIRFKEIRSKIKDLNL
K"
misc_feature 104980..105792
/locus_tag="HPKB_0105"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature 105082..105732
/locus_tag="HPKB_0105"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(105824..106722)
/locus_tag="HPKB_0106"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340522"
gene complement(106821..107351)
/locus_tag="HPKB_0108"
/db_xref="GeneID:12340523"
CDS complement(106821..107351)
/locus_tag="HPKB_0108"
/note="Consensus COG by CONSORF: COG0444"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761645.1"
/db_xref="GI:384887134"
/db_xref="GeneID:12340523"
/translation="MPKPKKNTLPCSLSIKMSYFMRLLIKWRTRSLSHKMMTLIQILS
ILALASKASEDLEEQLKKVKDYIYRTLNAKIASDVYNRVLILVNEYCANEELFDKESV
KISDLLIQDIQLYALVDEMLKEDKYQVQHTILKGIIKCKYDEAYSLNSEDRILLEYQE
RLLEPSYASFSNKKFK"
gene 107424..108368
/locus_tag="HPKB_0109"
/db_xref="GeneID:12340524"
CDS 107424..108368
/locus_tag="HPKB_0109"
/codon_start=1
/transl_table=11
/product="putative D-2-hydroxyacidde hydrogenase"
/protein_id="YP_005761646.1"
/db_xref="GI:384887135"
/db_xref="GeneID:12340524"
/translation="MKTFKKGVVLDAKSVGLKALEVLKEVADFDFYGITSPNQVVERC
KEAEIVVLNKVVITQEILSQLPELKLVCITATGTDNVDIKSAKALGIEVKNVSAYSTE
SVAQHTLACALSLLGRINDYDHYCKSGEYSQSDIFTHISGIKMGLIKGSQWGVIGLGT
IGKRVANLAQAFGAKVVYYSPNDKKEEYERLSLKDLLTTSDIISIHAPLNESTRDLIA
LKELQSLKDGAILINVGRGGIVNEKDLAGILETKDLYYGSDVFVKEPFEKDHAFLNPK
IQNKLLLTPHIAWAYSDSLKTLVEKTKENIQDFLASQK"
misc_feature 107436..108365
/locus_tag="HPKB_0109"
/note="2-hydroxyacid dehydrogenase; Provisional; Region:
PRK08410"
/db_xref="CDD:181414"
misc_feature 107454..>107771
/locus_tag="HPKB_0109"
/note="S-AdoMet dependent tetrapyrrole methylases; Region:
TP_methylase; cl00304"
/db_xref="CDD:212602"
misc_feature 107748..108287
/locus_tag="HPKB_0109"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
misc_feature order(107892..107894,107898..107906,107958..107966,
108042..108047,108069..108071,108123..108131)
/locus_tag="HPKB_0109"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29522"
gene complement(108810..109442)
/locus_tag="HPKB_0110"
/db_xref="GeneID:12340525"
CDS complement(108810..109442)
/locus_tag="HPKB_0110"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761647.1"
/db_xref="GI:384887136"
/db_xref="GeneID:12340525"
/translation="MKKIVLVAIALLMSACASYKITPEHVTSYNNGIQVMTSTQAKSK
VQLEIAQSKLKGLSESPLVLYVAAQVLEGNPVAFGRKAISVSINQTNLPVLSLRQVMK
SSFDFEGILQSFNIAVPTTPIDNVNMITPPMFYYGQGGFLAYDIMYGGMGLYGPGFGM
MMMDDVEEQEVMQESRQALKILAINYLKKNTLNVEGKAKWRVCGSGYQKP"
gene complement(109548..111008)
/locus_tag="HPKB_0111"
/db_xref="GeneID:12340526"
CDS complement(109548..111008)
/locus_tag="HPKB_0111"
/note="Consensus COG by CONSORF: COG0498"
/codon_start=1
/transl_table=11
/product="threonine synthase"
/protein_id="YP_005761648.1"
/db_xref="GI:384887137"
/db_xref="GeneID:12340526"
/translation="MPFAPTRSLKEKKIDFIEAILNPNAPKGGLYTLEHFETLQWQDC
LNLSYNELVECVFECLGLEIPKGLLTSALKRYENFDNPKNPAPIFALNERLFVQELYH
GPSLAFKDMALQPLASLFSNLAVGKNEKYLMLVSTSGDTGPATLESLAGMPNVFVVCL
YPKDGTSLVQKLQMVTQSASNLKVFGISGDFDDAQNALKNLLKDDDFNGALKARQLKL
SVANSVNFGRIAFQIVYHIWGFLELYKKGAINSKEKITLAIPSGNFGNALGAFYAKKM
GLNIAKIKVVTNSNDVLREFIETGRYDLTHRSLKQTYSPAMDILKSSNVERVLFDLFG
FERTLELMQALEEEKFYALKHKELALLQEHFSCASCSDEACLKTIQEVYAEHQYLIDP
HTATALNASLKTNEKTLVSATASYEKFPRTTLLALNEQKKNDNDKTALETLKNSYNTP
DSQRLDDLFEKGIKHQEVLKLNEIKSSILLWLENTH"
misc_feature complement(109677..111008)
/locus_tag="HPKB_0111"
/note="Threonine synthase [Amino acid transport and
metabolism]; Region: ThrC; COG0498"
/db_xref="CDD:30844"
misc_feature complement(109581..111002)
/locus_tag="HPKB_0111"
/note="Threonine synthase catalyzes the final step of
threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic phosphate
is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD
includes members from higher plants, cyanobacteria;
Region: Thr-synth_2; cd01560"
/db_xref="CDD:107203"
misc_feature complement(order(109770..109772,110220..110225,
110682..110684))
/locus_tag="HPKB_0111"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107203"
misc_feature complement(110682..110684)
/locus_tag="HPKB_0111"
/note="catalytic residue [active]"
/db_xref="CDD:107203"
gene 111212..113239
/locus_tag="HPKB_0112"
/db_xref="GeneID:12340527"
CDS 111212..113239
/locus_tag="HPKB_0112"
/note="Consensus COG by CONSORF: COG0840"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis transmembrane
sensory protein"
/protein_id="YP_005761649.1"
/db_xref="GI:384887138"
/db_xref="GeneID:12340527"
/translation="MSKGLSIGNKIILFVALIVIVCVSILGVSLNSRVKEILKENALR
SMQDSLHFKVKEVQGVLENTYTSMGIVKEMLPKDTKREIKIHLLKNFILANSHVAGVS
MFFKDREDLRLTLLRDNDTIKLMENPSLGNNSLVQKTMKNKEISKSLAYYRKMPNGKE
VYGVDILLPLLSENAKEVVGALMIFFSIDSFSNEITKNRSDLFLIGVKGKVLLSANKS
LQDRSIAEIYKSVPKATNEVMAILENGSKATLEYLDPFSHKENFLAVETFKMLGKTES
KDNLNWMIALIIEKDKVYEQVGSVRFVVIVASAIMVLALIIAITLLMRAIVSNRLEVV
SSTLSHFFKLLNNQANSSDIKLVEAKSNDELGRMQTAINKNILQTQKTMQEDKQAVQD
TIKVVSDVKKGNFAVRITAEPASPDLKELRDALNGIMDYLQESVGTHMPSIFKIFESY
SGLDFRGRIQNASGRVELVTNALGQEIQKMLETSSNFAKDLANDSTNLKECVQNLEKA
SNSQHKSLMETSKTIENITTSIQGVSSQSEAMIEQGQDIKSIVEIIRDIADQTNLLAL
NAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSISDTSESIKNQ
VKEVEEINASIEALRSVTEGNLKIASDSLEISQEIDKVSNDILEDVNKKQF"
misc_feature 112040..113236
/locus_tag="HPKB_0112"
/note="Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms]; Region:
Tar; COG0840"
/db_xref="CDD:31182"
misc_feature 112673..113215
/locus_tag="HPKB_0112"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(112679..112684,112691..112696,112703..112705,
112712..112717,112721..112726,112733..112735,
112742..112747,112754..112756,112763..112768,
112775..112780,112787..112789,112796..112801,
112805..112810,112820..112822,112826..112831,
112838..112840,112847..112852,112859..112864,
112871..112873,112880..112882,112889..112894,
112901..112903,112913..112915,112922..112924,
112943..112945,112955..112957,112964..112966,
112973..112978,112985..112987,112994..112999,
113006..113011,113015..113020,113027..113032,
113069..113074,113081..113083,113090..113095,
113102..113104,113111..113116,113117..113122,
113129..113134,113153..113155,113162..113167,
113174..113176,113183..113188,113192..113197,
113204..113209,113213..113215)
/locus_tag="HPKB_0112"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 112889..112990
/locus_tag="HPKB_0112"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 113239..114345
/locus_tag="HPKB_0113"
/db_xref="GeneID:12340528"
CDS 113239..114345
/locus_tag="HPKB_0113"
/note="Consensus COG by CONSORF: COG1636"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761650.1"
/db_xref="GI:384887139"
/db_xref="GeneID:12340528"
/translation="MLIHICCSVDNLYFLKKAKEAFVGEKIIGFFYNPNIHPYSEYLL
RLEDVKRTCEMLGIELLEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKA
FELGEEKFTTTLLTSPKKDPNQLIAKGQHIAQRHNLEFVVFRNDNFEHFKSELDLNLQ
ALARENELYRQNYCGCQFALKIQKESQNRSPFELYSPLKRQILPASVEERTQVFRELD
TAKKDANKPSLAQKTIATYRLLNGGVWLSKNSNPLNCYILARSKSKARVRINDLRWVF
SQRLNALVGYSQRDETLFLTLESLNTLMAKNYDNLKELNLNPLNYEEELSLRVLVSGS
ESINPIIVLEERTEKTLFVEIKSIFQEEKVFYLL"
misc_feature 113239..>113448
/locus_tag="HPKB_0113"
/note="Adenine nucleotide alpha hydrolases superfamily
including N type ATP PPases and ATP sulphurylases. The
domain forms a apha/beta/apha fold which binds to
Adenosine group; Region: Alpha_ANH_like; cd01986"
/db_xref="CDD:73292"
misc_feature order(113248..113256,113260..113271,113329..113331,
113335..113337)
/locus_tag="HPKB_0113"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:73292"
gene 114478..115239
/locus_tag="HPKB_0114"
/db_xref="GeneID:12340529"
CDS 114478..115239
/locus_tag="HPKB_0114"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761651.1"
/db_xref="GI:384887140"
/db_xref="GeneID:12340529"
/translation="MKTLFSVYLFLSLNPLFLEAKEVTWSQFLENFKNKNEDDKPKPL
TLDKNNEKQKVLDKNQEILKRALEKSLKFFFIFGYNYSQAAYSTTNQNLTILANSIGF
NTATGLEHFLRNHPKVGFRIFSVYNYSHSVSLSQPQILMVQNYGGALDFSWIFVDKKT
YRFRSYLGIALEQGVLLVDTIKSGAITTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQF
GIEMPLVRNVFYTYNNHQERFKPRFNANLSLIVSF"
misc_feature 114793..115236
/locus_tag="HPKB_0114"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(115222..116004)
/locus_tag="HPKB_0115"
/db_xref="GeneID:12340530"
CDS complement(115222..116004)
/locus_tag="HPKB_0115"
/note="Consensus COG by CONSORF: COG0463"
/codon_start=1
/transl_table=11
/product="glycosyltransferase"
/protein_id="YP_005761652.1"
/db_xref="GI:384887141"
/db_xref="GeneID:12340530"
/translation="MLKVSVITACFNSEKTLEDTILSVLNQTYKNIEYIIIDGASTDS
TLEIIQKYKDKIACAISEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVEKVV
HEFENKNCDSVYADLVFVKPDCLEKVVRYYESGEFNPKTLLYGVVPAHPTLFVKKAIH
ERYGLYKTDYKISADFEMIIRLFVVQKISFSYLKEVLVIMRTGGVSARGFKSLLLRNK
ENLRACQENGIQANVFSMLLKYPRKIMGLFKRGSKGSLKRND"
misc_feature complement(<115351..116004)
/locus_tag="HPKB_0115"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:30811"
misc_feature complement(115381..115992)
/locus_tag="HPKB_0115"
/note="WfgS and WfeV are involved in O-antigen
biosynthesis; Region: GT_2_WfgS_like; cd06433"
/db_xref="CDD:133055"
misc_feature complement(order(115474..115476,115480..115482,
115891..115893))
/locus_tag="HPKB_0115"
/note="metal-binding site"
/db_xref="CDD:133055"
gene complement(116035..117732)
/locus_tag="HPKB_0116"
/db_xref="GeneID:12340531"
CDS complement(116035..117732)
/locus_tag="HPKB_0116"
/note="Consensus COG by CONSORF: COG0840"
/codon_start=1
/transl_table=11
/product="transducer (chemotactic transducer PCTA)"
/protein_id="YP_005761653.1"
/db_xref="GI:384887142"
/db_xref="GeneID:12340531"
/translation="MVFFSMFSSLGTRIMFVVLAALLGLGGLFIGFVKVMQKDVLTQL
MEHLETGQYKKREKTLAYMTEIIEQGIHEYYKSFDNATARKMALDYFKRINDDKGMIY
MVVVDKNGVVLFDPVNPKTVGQSGLDAQSVDGVYYVRGYLEAAKKGGGYTYYKMPKYD
GGVPEKKFAYSHYDEVSQMVIAATSYYTDINTENKAITEGVGKVFNENTTKLFLWILT
ATIALVVLTLIYAKLRIVKRIDELVFKINAFSHGDKDLRTKIDVGDRNDEISQVGRGV
NLFVENARLIMEEIKGISTLNKTSMGKLVQITQETQKNMKNSSTTLNSVKNKATDIAS
MMNASIEQSQGLRKRLIETQAFVKESKDAIGDLFSQITESAHTEEELSSQVEQLSRNA
DDVKSILDIINDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAGRTQKSLAE
INSTIMVIVQEINAVSSQMNLNSQKMERLSDMSKSVQETYEKMSSNLSSVVSDSNQSM
DDYAKSGHQIEAMISDFVEVEKVASKTLADSSDILNIVTHVSETTMNLDKQVNLFKT"
misc_feature complement(117319..117576)
/locus_tag="HPKB_0116"
/note="Cache is an extracellular domain that is predicted
to have a role in small-molecule recognition in a wide
range of proteins; Region: Cache_2; smart01049"
/db_xref="CDD:198117"
misc_feature complement(116869..117033)
/locus_tag="HPKB_0116"
/note="HAMP (Histidine kinases, Adenylyl cyclases, Methyl
binding proteins, Phosphatases) domain; Region: HAMP;
smart00304"
/db_xref="CDD:197640"
misc_feature complement(116041..116826)
/locus_tag="HPKB_0116"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(<116260..116727)
/locus_tag="HPKB_0116"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(116266..116271,116275..116280,
116287..116289,116296..116301,116317..116319,
116326..116331,116368..116373,116380..116385,
116389..116394,116401..116406,116413..116415,
116422..116427,116434..116436,116443..116445,
116455..116457,116476..116478,116485..116487,
116497..116499,116506..116511,116518..116520,
116527..116529,116536..116541,116548..116553,
116560..116562,116569..116574,116578..116580,
116590..116595,116599..116604,116611..116613,
116620..116625,116632..116637,116644..116646,
116653..116658,116665..116667,116674..116679,
116683..116688,116695..116697,116704..116706,
116707..116709))
/locus_tag="HPKB_0116"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(116410..116511)
/locus_tag="HPKB_0116"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(117940..119685)
/locus_tag="HPKB_0117"
/db_xref="GeneID:12340532"
CDS complement(117940..119685)
/locus_tag="HPKB_0117"
/note="Consensus COG by CONSORF: COG0737"
/codon_start=1
/transl_table=11
/product="2`,3`-cyclic-nucleotide 2`-phosphodiesterase"
/protein_id="YP_005761654.1"
/db_xref="GI:384887143"
/db_xref="GeneID:12340532"
/translation="MKKLVLIIFLTLTLSISAKEVKIVFLETSDIHGRLFSYDYATGE
QKPNNGLTRIATLIKKQRAENKNVVLIDSGDLLQGNSAELFNDEPIHPLILAENDLKF
DIRVLGNHEFNFSKDFLEKNIKGFNGDVVNANIIKTNDNQPFVKPYAVKKIDGVRVAI
VGYVVPHIPTWEASTPEHFAGLEFLDAEKALKKTLKELKGKYDILIGAFHLGREDEKG
GDGIPDLAKKFPQFDIIFAGHEHAVYNTKIGKVHTIEPGAYGAYLAKGVVVFDTKTKK
KIVTTENLPTKGVPEDEELAKKYAYVDKKSKEYANEVVGEVTKTFIDRPDFITGEEKI
TTMPTAALQETPVIELINKVQKYYAKADVSAAALFNFGANLKKGPFKRKDVAYIYKFA
NTLIGVNITGENLLKYMEWSYRFYNQLQPGDLTISFNENIRGYNFDMFSGVKYQVDVT
KPAGSRIINPTINNKPIDPKAVYKLAINNYRFGTLSKTLNLVTDANRYYNSYDGLQDN
GQIRDLIIKYITEEKGGKVTPELEHNWEIINYNFKNPLLEKLREKLKEGSIKIPTSKD
GRTLNVKSIKESEVK"
misc_feature complement(118183..119634)
/locus_tag="HPKB_0117"
/note="5'-nucleotidase/2',3'-cyclic phosphodiesterase and
related esterases [Nucleotide transport and metabolism];
Region: UshA; COG0737"
/db_xref="CDD:31080"
misc_feature complement(118828..119619)
/locus_tag="HPKB_0117"
/note="Escherichia coli CpdB and related proteins,
N-terminal metallophosphatase domain; Region: MPP_CpdB_N;
cd07410"
/db_xref="CDD:163653"
misc_feature complement(order(118963..118965,118969..118971,
119056..119058,119356..119361,119461..119463,
119590..119592,119596..119598))
/locus_tag="HPKB_0117"
/note="active site"
/db_xref="CDD:163653"
misc_feature complement(order(118963..118965,118969..118971,
119056..119058,119359..119361,119461..119463,
119590..119592,119596..119598))
/locus_tag="HPKB_0117"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163653"
misc_feature complement(118237..118686)
/locus_tag="HPKB_0117"
/note="5'-nucleotidase, C-terminal domain; Region:
5_nucleotid_C; pfam02872"
/db_xref="CDD:202440"
gene complement(119828..120295)
/locus_tag="HPKB_0118"
/db_xref="GeneID:12340533"
CDS complement(119828..120295)
/locus_tag="HPKB_0118"
/note="Consensus COG by CONSORF: COG1854"
/codon_start=1
/transl_table=11
/product="S-ribosylhomocysteinase"
/protein_id="YP_005761655.1"
/db_xref="GI:384887144"
/db_xref="GeneID:12340533"
/translation="MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRF
KQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILE
VLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV"
misc_feature complement(119834..120280)
/locus_tag="HPKB_0118"
/note="S-Ribosylhomocysteinase (LuxS); Region: LuxS;
pfam02664"
/db_xref="CDD:217172"
gene complement(120330..121472)
/locus_tag="HPKB_0119"
/db_xref="GeneID:12340534"
CDS complement(120330..121472)
/locus_tag="HPKB_0119"
/note="Consensus COG by CONSORF: COG0626"
/codon_start=1
/transl_table=11
/product="cystathionine gamma-synthase"
/protein_id="YP_005761656.1"
/db_xref="GI:384887145"
/db_xref="GeneID:12340534"
/translation="MRMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDAIGRHKGYEY
SRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLLQSGDHVLLGDDVYGGTF
RLFNKVLVKNNLSCTIIDTSDISQIKKAIKPNTKALYLETPSNPLLKITDLVQCASVA
KDHGLLTIVDNTFATPYCQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQE
IAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPG
LPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGGVESLVGIPA
LMTHACIPKVQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKIG"
misc_feature complement(120333..121472)
/locus_tag="HPKB_0119"
/note="cystathionine gamma-synthase/cystathionine
beta-lyase; Validated; Region: PRK06176"
/db_xref="CDD:180443"
misc_feature complement(120342..121418)
/locus_tag="HPKB_0119"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature complement(order(120537..120539,120771..120776,
120780..120782,120810..120812,120861..120863,
120867..120869,120891..120893,121155..121157,
121164..121166,121179..121181,121245..121250,
121254..121259,121335..121337,121341..121343,
121374..121379,121383..121394))
/locus_tag="HPKB_0119"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature complement(order(120861..120863,120888..120893,
120897..120899,120963..120965,121050..121052,
121179..121181,121248..121256))
/locus_tag="HPKB_0119"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature complement(order(120888..120893,120897..120899,
120954..120956,120963..120965,121179..121181,
121248..121256))
/locus_tag="HPKB_0119"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature complement(120888..120890)
/locus_tag="HPKB_0119"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
gene complement(121493..122413)
/locus_tag="HPKB_0120"
/db_xref="GeneID:12340535"
CDS complement(121493..122413)
/locus_tag="HPKB_0120"
/note="Consensus COG by CONSORF: COG0031"
/codon_start=1
/transl_table=11
/product="cysteine synthetase"
/protein_id="YP_005761657.1"
/db_xref="GI:384887146"
/db_xref="GeneID:12340535"
/translation="MMIITTMQDAIGRTPVFKFTSKDYPIPIKSAIYAKLEHLNPGGS
IKDRLGQYLIEEGFKTGKITSKTTIIEPTAGNTGIALALVALKHHLKTIFVVPEKFST
EKQQIMRALGAKVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTL
APEIVQELGTNLTSFVAGIGSGGTFVGTARYLKEHIPAIRLIGVEPEGSILNGGEPGP
HEIEGIGVEFIPPFFANLDIDGFETISDEEGFSYTRELAKKNGLLVGSSSGAAFVAAL
KEAQRLPEGSQVLTIFPDVADRYLSKGIYL"
misc_feature complement(121508..122407)
/locus_tag="HPKB_0120"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:30381"
misc_feature complement(121511..122380)
/locus_tag="HPKB_0120"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature complement(order(121514..121516,121523..121525,
121553..121555,121625..121633,121637..121645,
121913..121918,122081..122086,122093..122098,
122105..122110,122156..122158,122165..122167,
122291..122293,122297..122299,122315..122317,
122360..122368))
/locus_tag="HPKB_0120"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature complement(order(121532..121537,121613..121615,
121745..121747,121862..121879,122186..122188,
122276..122278))
/locus_tag="HPKB_0120"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature complement(122276..122278)
/locus_tag="HPKB_0120"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene complement(122667..124529)
/gene="dnaK"
/locus_tag="HPKB_0121"
/db_xref="GeneID:12340536"
CDS complement(122667..124529)
/gene="dnaK"
/locus_tag="HPKB_0121"
/note="Consensus COG by CONSORF: COG0443"
/codon_start=1
/transl_table=11
/product="chaperone and heatshock protein 70"
/protein_id="YP_005761658.1"
/db_xref="GI:384887147"
/db_xref="GeneID:12340536"
/translation="MGKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTD
KGEILVGESAKRQAVTNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAI
EISGKVYTPQEISAKILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIA
GLNVLRIINEPTSAALAYGLDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGD
AFLGGDDFDNRVIDFLASEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEIN
LPFITADATGPKHLVKKLTRAKFESLTEDLVEETISKIESVIKDAGLTKNEISEVVMV
GGSTRIPKVQERVKAFINKDLNKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLS
LGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGK
FDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLSDSEIEK
MVKDAELHKEEDARKKEVIEARNHADSLAHQTQKSLDEHKTNLNENDANEIQNAINAL
KECVKNDNATKAELEDKTKALAQAAQKLGEAMANKNNAEQPKKKDDDVIDAEVE"
misc_feature complement(122670..124529)
/gene="dnaK"
/locus_tag="HPKB_0121"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature complement(123414..124529)
/gene="dnaK"
/locus_tag="HPKB_0121"
/note="Nucleotide-binding domain of human HSPA9 and
similar proteins; Region: HSPA9-Ssq1-like_NBD; cd10234"
/db_xref="CDD:212676"
misc_feature complement(order(123513..123515,123519..123527,
123726..123728,123738..123740,123747..123749,
123861..123863,123939..123941,123945..123950,
124020..124022,124320..124322,124491..124502))
/gene="dnaK"
/locus_tag="HPKB_0121"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212676"
misc_feature complement(order(123693..123698,123702..123704,
123756..123758,123765..123770,123777..123779,
124137..124148,124350..124355,124359..124364,
124371..124373,124383..124385,124437..124439,
124446..124448))
/gene="dnaK"
/locus_tag="HPKB_0121"
/note="NEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212676"
misc_feature complement(order(123891..123902,124023..124025,
124029..124034,124077..124082,124086..124091))
/gene="dnaK"
/locus_tag="HPKB_0121"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212676"
gene complement(124560..125135)
/locus_tag="HPKB_0122"
/db_xref="GeneID:12340537"
CDS complement(124560..125135)
/locus_tag="HPKB_0122"
/note="Consensus COG by CONSORF: COG0576"
/codon_start=1
/transl_table=11
/product="co-chaperone and heat shock protein 24"
/protein_id="YP_005761659.1"
/db_xref="GI:384887148"
/db_xref="GeneID:12340537"
/translation="MKDKHNQEHDHLSQEELESCKKACACKEQQGEEMQEASEKECEI
KEDFELKYQEMHEKYLRAHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGA
HKSAAEENKESALTKGLELTMEKLHEVLARHGIEGIECLEEFDPNFHNAIMQVKSEEK
ENGKIVQVLQQGYKYKGRVLRPAMVSIAKND"
misc_feature complement(124569..125051)
/locus_tag="HPKB_0122"
/note="GrpE; Region: GrpE; pfam01025"
/db_xref="CDD:201556"
misc_feature complement(124575..124979)
/locus_tag="HPKB_0122"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cd00446"
/db_xref="CDD:73207"
misc_feature complement(order(124737..124739,124770..124772,
124779..124781,124830..124832,124842..124844,
124863..124865,124872..124874,124884..124886,
124926..124931,124938..124940,124950..124952,
124959..124964,124971..124976))
/locus_tag="HPKB_0122"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73207"
misc_feature complement(order(124590..124592,124602..124604,
124629..124631,124677..124691,124698..124700,
124923..124925))
/locus_tag="HPKB_0122"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:73207"
gene complement(125135..125965)
/locus_tag="HPKB_0123"
/db_xref="GeneID:12340538"
CDS complement(125135..125965)
/locus_tag="HPKB_0123"
/note="Consensus COG by CONSORF: COG1420. Candidate starts
by CONSORF: 125998,125965"
/codon_start=1
/transl_table=11
/product="putative heat shock regulator"
/protein_id="YP_005761660.1"
/db_xref="GI:384887149"
/db_xref="GeneID:12340538"
/translation="MVIDEIFQIMMLKRIKVGSDLNKKESLLDAFVKTYLQILEPISS
KRLKELANLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKSLRFEVL
KVNEKRLKSASENFGLFTLLKKPSLERLERVIECEKRFLILDFLAFSCVLSYSVKMEK
FLLELVGRSVKEVRSIAASVNALSLARQLERLEYSNTQITRFNLMGLKTLLNSPLFFD
ILGGKVLERLKKPLDFIEPDCMLVTRPIEFQNKRIQLLCVGKLECDYEGFFQTISKEE
"
misc_feature complement(125144..125908)
/locus_tag="HPKB_0123"
/note="heat-inducible transcription repressor;
Provisional; Region: PRK03911"
/db_xref="CDD:179674"
gene 126185..126823
/locus_tag="HPKB_0124"
/db_xref="GeneID:12340539"
CDS 126185..126823
/locus_tag="HPKB_0124"
/note="Consensus COG by CONSORF: COG0235"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761661.1"
/db_xref="GI:384887150"
/db_xref="GeneID:12340539"
/translation="MLNMNTHTRGIDSNLIHSLQSISLSMFRKGFFGLYQGSISARIG
TNQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYA
RPPYSLAYSLRHNRLLPRDYLGYRSLGEEISIFNPKDYDSWQERADTEILRQLQESKK
YFVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV"
misc_feature 126212..126787
/locus_tag="HPKB_0124"
/note="hypothetical protein; Provisional; Region:
PRK05834"
/db_xref="CDD:180279"
misc_feature order(126245..126247,126257..126259,126281..126283,
126350..126352,126356..126361,126491..126493,
126497..126502,126515..126523)
/locus_tag="HPKB_0124"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29521"
misc_feature order(126296..126298,126341..126346,126422..126430,
126485..126487,126491..126493)
/locus_tag="HPKB_0124"
/note="active site"
/db_xref="CDD:29521"
misc_feature order(126485..126487,126491..126493)
/locus_tag="HPKB_0124"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:29521"
gene 126844..127140
/locus_tag="HPKB_0125"
/db_xref="GeneID:12340540"
CDS 126844..127140
/locus_tag="HPKB_0125"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761662.1"
/db_xref="GI:384887151"
/db_xref="GeneID:12340540"
/translation="MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQNSVQDG
FSQDNAQNAPDFDRLQALNTINNDGEIKDKSQVEKNLASGENTPEIYSSLDTYA"
gene complement(127165..129048)
/locus_tag="HPKB_0126"
/db_xref="GeneID:12340541"
CDS complement(127165..129048)
/locus_tag="HPKB_0126"
/note="Consensus COG by CONSORF: COG2604. Candidate starts
by CONSORF: 129051,129048"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761663.1"
/db_xref="GI:384887152"
/db_xref="GeneID:12340541"
/translation="MDIYQKNLQALFKKDPLLFAKLKAIKENKKYEVFLGNDSANFNL
LDKETNTPLFEKSPLDSSLELYKNSEIYMLYPYLYYFGLGNGVFYRLLLGNENLKRLV
VIEPEIEVIFIVLNLLDFSTEILENRLILLHANFCNYNMIASLFDMDKKSRLYARMYD
LKLFNAYYERYSHQMIEINQHFTRALEHGAISVGNDAKDALIGIKQHAANLPEVIKSP
SLVDFVNALKNRDTAIIVSTGPSLNKQLPLLKEIAPYATLFCIDASFPILAKAGIKPD
IVLSLERVDLTAKFYEETPLDFQEGVIFALTSIVHKRLIQAIKKGVKQFSFRPFGYTN
LFGLHQYGYVGIGMSAANMAYELVVHSRFKRCVFIGQDLSFSQSGNSHASGAIYGDRE
IKPKKDKDKIFTEKYGGNGEVETTLVWKLFLEFFEKDIFNTPYKLEVINATEGGARIK
GTKEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIAKQKCEEIIKYTNEKKTQV
EEVFLKVAPFLEEVEKLHEEKKLEELDFKKLENLSAEIDNIKELFDDKRFNSYFMDAI
QSYIFHQELHIAEIVCKKTNNEDELRAKQLEYIYAHKYWLFSLAGGMDCVIEAIKMAL
KEW"
misc_feature complement(127186..129048)
/locus_tag="HPKB_0126"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2604"
/db_xref="CDD:32596"
gene complement(129111..130655)
/locus_tag="HPKB_0127"
/db_xref="GeneID:12340542"
CDS complement(129111..130655)
/locus_tag="HPKB_0127"
/note="Consensus COG by CONSORF: COG1344"
/codon_start=1
/transl_table=11
/product="flagellin B"
/protein_id="YP_005761664.1"
/db_xref="GI:384887153"
/db_xref="GeneID:12340542"
/translation="MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADD
SSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQD
GQTLESRKALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKAS
IGSTSSDKIGHVRMETSSFSAEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRIST
SAGTGIGALSEIINRFSNTLGVRASYNVMATGGTPVQSGTVKDLTINGVEIGTVNDVH
KNDADGRLVNAINSVKDRTGVEASLDIQGRINLHSIDGRAISVHATSASGQVFGGGNF
AGISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDA
NVASAAGANANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQM
ELVTTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQN
VLRLLQ"
misc_feature complement(129114..130655)
/locus_tag="HPKB_0127"
/note="flagellin B; Provisional; Region: PRK13588"
/db_xref="CDD:184167"
misc_feature complement(130227..130643)
/locus_tag="HPKB_0127"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
misc_feature complement(129909..130064)
/locus_tag="HPKB_0127"
/note="Flagellin hook IN motif; Region: Flagellin_IN;
pfam07196"
/db_xref="CDD:148666"
misc_feature complement(129717..129875)
/locus_tag="HPKB_0127"
/note="Flagellin hook IN motif; Region: Flagellin_IN;
pfam07196"
/db_xref="CDD:148666"
misc_feature complement(129159..129374)
/locus_tag="HPKB_0127"
/note="Bacterial flagellin C-terminal helical region;
Region: Flagellin_C; pfam00700"
/db_xref="CDD:144340"
gene 130821..133031
/locus_tag="HPKB_0128"
/db_xref="GeneID:12340543"
CDS 130821..133031
/locus_tag="HPKB_0128"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase I"
/protein_id="YP_005761665.1"
/db_xref="GI:384887154"
/db_xref="GeneID:12340543"
/translation="MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIK
IDETGFTPNYVVDKDHKELVKQIIELSKKASTTYIATDEDREGEAIGYHVACLIGGKL
ESYPRIVFHEITQNAILNALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITK
GLSAGRVQSAALKLVIDREREIKAFKPLTYFTLDAYFEPHLEAQLISYRGNKLKAQEL
IDERKAQEIKNELEKESYTISSIIKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMS
IAQKLYEGVATPQGVMGVITYMRTDSLNIAKEALEEARNKILKDYGKDYLPPKAKVYS
SKNKNAQEAHEAIRPTSIVLEPNALKDYLKPEELKLYTLIYKRFLASQMQDALFESQS
VVVACEKGEFKASGRKLLFDGYYKILGNDDKDKLLPNLKENDPIKLEKLESNAHVTEP
PARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVMEILE
KHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQKVHE
KTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYVKQTENANDGAKQESCEKCGGEMV
QKFSKNGAFLACNNYPECKNTKSLKNTPNANEIIEGVKCPECGGDIALKRSKKGSFYG
CNNYPKCRFLSNHKPINKRCEKCRYLMSERIYRKKKAHECIQCKERVFLEEDDG"
misc_feature 130821..132914
/locus_tag="HPKB_0128"
/note="DNA topoisomerase I; Validated; Region: PRK05582"
/db_xref="CDD:180146"
misc_feature 130824..131195
/locus_tag="HPKB_0128"
/note="TOPRIM_TopoIA_TopoI: The topoisomerase-primase
(TORPIM) domain found in members of the type IA family of
DNA topoisomerases (Topo IA) similar to Escherichia coli
DNA topoisomerase I. Type IA DNA topoisomerases remove
(relax) negative supercoils in the...; Region:
TOPRIM_TopoIA_TopoI; cd03363"
/db_xref="CDD:173783"
misc_feature order(130842..130847,130854..130856,131064..131066,
131070..131072,131076..131078)
/locus_tag="HPKB_0128"
/note="active site"
/db_xref="CDD:173783"
misc_feature order(130863..130865,131067..131069,131073..131075,
131094..131099,131103..131108)
/locus_tag="HPKB_0128"
/note="interdomain interaction site; other site"
/db_xref="CDD:173783"
misc_feature order(131064..131066,131070..131072)
/locus_tag="HPKB_0128"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173783"
misc_feature 131073..131075
/locus_tag="HPKB_0128"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173783"
misc_feature 131208..132476
/locus_tag="HPKB_0128"
/note="DNA Topoisomerase, subtype IA; DNA-binding,
ATP-binding and catalytic domain of bacterial DNA
topoisomerases I and III, and eukaryotic DNA topoisomerase
III and eubacterial and archael reverse gyrases.
Topoisomerases clevage single or double stranded DNA...;
Region: TOP1Ac; cd00186"
/db_xref="CDD:73184"
misc_feature order(131208..131291,131310..131366)
/locus_tag="HPKB_0128"
/note="domain I; other site"
/db_xref="CDD:73184"
misc_feature order(131235..131240,131247..131249,131259..131261,
131271..131273,131655..131657,131667..131669,
131715..131717,132234..132239,132246..132251,
132255..132257,132267..132272)
/locus_tag="HPKB_0128"
/note="DNA binding groove [nucleotide binding]"
/db_xref="CDD:73184"
misc_feature order(131337..131339,131349..131351,132342..132344)
/locus_tag="HPKB_0128"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:73184"
misc_feature order(131379..131408,131496..131534,131970..132014,
132018..132074,132135..132167)
/locus_tag="HPKB_0128"
/note="domain II; other site"
/db_xref="CDD:73184"
misc_feature order(131535..131546,131580..131588,131592..131672,
131697..131783,131847..131873,131907..131969)
/locus_tag="HPKB_0128"
/note="domain III; other site"
/db_xref="CDD:73184"
misc_feature order(131601..131603,131613..131621,131850..131852,
131925..131927,131934..131936,131946..131948,
132228..132230,132234..132236,132300..132302)
/locus_tag="HPKB_0128"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:73184"
misc_feature order(131709..131711,131715..131717,131850..131852)
/locus_tag="HPKB_0128"
/note="catalytic site [active]"
/db_xref="CDD:73184"
misc_feature order(132168..132290,132300..132344,132360..132476)
/locus_tag="HPKB_0128"
/note="domain IV; other site"
/db_xref="CDD:73184"
misc_feature 132525..132638
/locus_tag="HPKB_0128"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 132657..132770
/locus_tag="HPKB_0128"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 132798..132914
/locus_tag="HPKB_0128"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
gene 133024..133950
/locus_tag="HPKB_0129"
/db_xref="GeneID:12340544"
CDS 133024..133950
/locus_tag="HPKB_0129"
/note="Consensus COG by CONSORF: COG0731. Candidate starts
by CONSORF: 133021,133024"
/codon_start=1
/transl_table=11
/product="radical SAM domain-containing protein"
/protein_id="YP_005761666.1"
/db_xref="GI:384887155"
/db_xref="GeneID:12340544"
/translation="MAKENLPIVFGPVLSRRFGKSLGVDLSPSKKQCNYNCIYCELGK
AKPIERMEEVIEVKTLISAIQNALNNLATPIDVLTITANGEPTLYPHLLELIQSIKPF
LKGVKTLILSNGSLFYEPKVQQALKEFDIVKFSLDAIDLKAFERVDKPYSKDIDKILE
GILSFSQIYQGQLVAEVLLIKGVNDSANNLKRIADFLKKINTARVDLSTIDRPSSFKA
PKLSEDELLKCSLFFEGLCVSLPKRSIAQAKKLISCGIDELLALISRRPLSAEEAPLI
LDPNAFKHLETLLNHKQITIKKVGSLEFYCAF"
misc_feature 133024..133887
/locus_tag="HPKB_0129"
/note="Fe-S oxidoreductases [Energy production and
conversion]; Region: COG0731"
/db_xref="CDD:31075"
misc_feature 133114..133644
/locus_tag="HPKB_0129"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(133120..133122,133126..133128,133132..133134,
133138..133146,133264..133266,133273..133278,
133354..133362,133426..133428,133555..133557)
/locus_tag="HPKB_0129"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(134043..135281)
/locus_tag="HPKB_0130"
/db_xref="GeneID:12340545"
CDS complement(134043..135281)
/locus_tag="HPKB_0130"
/note="Candidate starts by CONSORF: 135299,135287,135281"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761667.1"
/db_xref="GI:384887156"
/db_xref="GeneID:12340545"
/translation="MKSVKIGKTNKVSKNTEMAHTKTNKETHFKQVSAITNTLKSIGG
IFTKIAKKVRELIKKHPEKSSAALVVLTHVACKRAKELDDKVQDKSKQAEKENQINWW
KYSGLTIATSLLLAACSTGDIDKQIELEQEKQKANKSGIELEQERQKTEQEKQKANKS
EIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQR
DLIKEQKDFIKETEQNCQEKHGQLFIKKTRIKTGITTGIAIEIEAECKTPKPAKTNQT
PIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLE
LDPRDFKVTEEWQNENLKIRSKAQAKMLEMRNPQAHLPTSQSLLFVQKIFADINKEIK
IVANTEKKAEKAGYGYSKRV"
misc_feature complement(134046..135281)
/locus_tag="HPKB_0130"
/note="Helicobacter pylori protein of unknown function
(DUF874); Region: DUF874; pfam05917"
/db_xref="CDD:114629"
gene complement(135381..137819)
/gene="ppsA"
/locus_tag="HPKB_0131"
/db_xref="GeneID:12340546"
CDS complement(135381..137819)
/gene="ppsA"
/locus_tag="HPKB_0131"
/note="Consensus COG by CONSORF: COG0574"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate synthase"
/protein_id="YP_005761668.1"
/db_xref="GI:384887157"
/db_xref="GeneID:12340546"
/translation="MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFA
ITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEI
FQAYEILSQQYNMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCL
ASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFIT
SAWGLGENVVGGTINPDEFYVFKPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRN
IKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDIEWAKDGDSGEIFIV
QARPETVQSQKTKEESQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHM
NSFKEGEILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGAT
DSLYTGMEITVSCAEGEEGYVYAGIYEHEIERVELSNMQETQTKIYINIGNPEKAFSF
SQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKRSVKEKNEIENLMAGYANPKDFFV
KKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYY
SESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNG
LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDRDSELVSHVFDERNEAM
LKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVA
KLEKELKDHGLTAH"
misc_feature complement(135408..137819)
/gene="ppsA"
/locus_tag="HPKB_0131"
/note="phosphoenolpyruvate synthase; Validated; Region:
PRK06464"
/db_xref="CDD:180577"
misc_feature complement(136773..137753)
/gene="ppsA"
/locus_tag="HPKB_0131"
/note="Pyruvate phosphate dikinase, PEP/pyruvate binding
domain; Region: PPDK_N; pfam01326"
/db_xref="CDD:201730"
misc_feature complement(136437..136637)
/gene="ppsA"
/locus_tag="HPKB_0131"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature complement(135417..136349)
/gene="ppsA"
/locus_tag="HPKB_0131"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
gene 138006..138137
/locus_tag="HPKB_0132"
/db_xref="GeneID:12340547"
CDS 138006..138137
/locus_tag="HPKB_0132"
/note="Candidate starts by CONSORF: 138000,138006"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761669.1"
/db_xref="GI:384887158"
/db_xref="GeneID:12340547"
/translation="MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC"
gene 138178..140016
/gene="thrS"
/locus_tag="HPKB_0133"
/db_xref="GeneID:12340548"
CDS 138178..140016
/gene="thrS"
/locus_tag="HPKB_0133"
/note="Consensus COG by CONSORF: COG0441"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_005761670.1"
/db_xref="GI:384887159"
/db_xref="GeneID:12340548"
/translation="MSAELIAVYKDEQIIDLESAKALGLSDGVKALNGTEPIYFDDSP
LALEVIRHSCAHLLAQSLKALYPDAKFFVGPVVEEGFYYDFKTASKISEEDLPKIEAK
MKEFAKLKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEFEDLCKGP
HLPNTRFLNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKRD
HRKLGVELGLFSFDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILK
SDVWKISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEY
GVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYE
MELSTRPAKSIGDDKVWEKATSALKEALKEHRIGYKIDEGGGAFYGPKIDIKITDALK
RKWQCGTIQVDMNLPERFKLAFTNERNHAEQPVMIHRAILGSFERFIAILSEHFGGNF
PFFVAPTQIALIPINEEHHAFALKLKEVLKKCDIFVEVLDKNDSLNKKVRLAEKQKIP
MILVLGNEEVETEILSIRDREKQAQYKMPLKEFLNMVESKMQEVSF"
misc_feature 138301..140013
/gene="thrS"
/locus_tag="HPKB_0133"
/note="threonyl-tRNA synthetase; Reviewed; Region: thrS;
PRK12305"
/db_xref="CDD:183422"
misc_feature 138616..138759
/gene="thrS"
/locus_tag="HPKB_0133"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; pfam07973"
/db_xref="CDD:203824"
misc_feature 138829..139719
/gene="thrS"
/locus_tag="HPKB_0133"
/note="Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is responsible
for the attachment of threonine to the 3' OH group of
ribose of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ThrRS_core;
cd00771"
/db_xref="CDD:29816"
misc_feature order(138838..138840,138877..138879,139030..139032,
139042..139044,139051..139056,139096..139098,
139192..139194,139198..139200,139204..139212,
139225..139233,139240..139242,139246..139248,
139528..139530,139537..139542,139552..139554,
139648..139653,139660..139662)
/gene="thrS"
/locus_tag="HPKB_0133"
/note="active site"
/db_xref="CDD:29816"
misc_feature order(138850..138852,138868..138870,138874..138882,
138886..138888,138892..138894,138898..138903,
138907..138909,138916..138918,138961..138966,
138976..138981,138985..138987,138991..138999,
139003..139005,139057..139065,139069..139080,
139084..139086,139120..139125,139132..139140,
139144..139152,139189..139191,139195..139197,
139204..139206,139234..139239,139318..139320,
139441..139449,139594..139596,139600..139602)
/gene="thrS"
/locus_tag="HPKB_0133"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29816"
misc_feature 138976..138999
/gene="thrS"
/locus_tag="HPKB_0133"
/note="motif 1; other site"
/db_xref="CDD:29816"
misc_feature 139189..139200
/gene="thrS"
/locus_tag="HPKB_0133"
/note="motif 2; other site"
/db_xref="CDD:29816"
misc_feature 139648..139662
/gene="thrS"
/locus_tag="HPKB_0133"
/note="motif 3; other site"
/db_xref="CDD:29816"
misc_feature 139717..139989
/gene="thrS"
/locus_tag="HPKB_0133"
/note="ThrRS Threonyl-anticodon binding domain. ThrRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
ThrRS_anticodon; cd00860"
/db_xref="CDD:29800"
misc_feature order(139741..139746,139849..139851,139867..139869,
139891..139893,139921..139923,139927..139929)
/gene="thrS"
/locus_tag="HPKB_0133"
/note="anticodon binding site; other site"
/db_xref="CDD:29800"
gene 140013..140624
/gene="infC"
/locus_tag="HPKB_0134"
/db_xref="GeneID:12340549"
CDS 140013..140624
/gene="infC"
/locus_tag="HPKB_0134"
/note="Consensus COG by CONSORF: COG0290"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-3"
/protein_id="YP_005761671.1"
/db_xref="GI:384887160"
/db_xref="GeneID:12340549"
/translation="MSRNEVLLNGDINFKEVRCVGDNGEVYGIISSKEALNIAQNLGL
DLVLISASAKPPVCKVMDYNKFRYQNEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINY
KVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPEKEPKTEGR
FVSWMFVPKAKEAPKNEKKTKENNPPFNRINLMKGENHAKNED"
misc_feature 140019..140219
/gene="infC"
/locus_tag="HPKB_0134"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature 140034..140513
/gene="infC"
/locus_tag="HPKB_0134"
/note="translation initiation factor IF-3; Region: infC;
TIGR00168"
/db_xref="CDD:129272"
misc_feature 140283..140513
/gene="infC"
/locus_tag="HPKB_0134"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene 140605..140799
/gene="rpmI"
/locus_tag="HPKB_0135"
/db_xref="GeneID:12340550"
CDS 140605..140799
/gene="rpmI"
/locus_tag="HPKB_0135"
/note="Consensus COG by CONSORF: COG0291"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_005761672.1"
/db_xref="GI:384887161"
/db_xref="GeneID:12340550"
/translation="MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLN
APKHVHHTNAHSVMSLLCRA"
misc_feature 140605..140796
/gene="rpmI"
/locus_tag="HPKB_0135"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:234676"
gene 140894..141244
/gene="rplT"
/locus_tag="HPKB_0136"
/db_xref="GeneID:12340551"
CDS 140894..141244
/gene="rplT"
/locus_tag="HPKB_0136"
/note="Consensus COG by CONSORF: COG0292"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_005761673.1"
/db_xref="GI:384887162"
/db_xref="GeneID:12340551"
/translation="MRVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSMYY
AFRDRKQKKREFRSLWVVRINAACRMHNTSYSHFMHALKVAGVELDRKVLADMAMNDM
QAFESVLESVKEHL"
misc_feature 140957..141232
/gene="rplT"
/locus_tag="HPKB_0136"
/note="ribosomal protein L20; Region: rpl20; CHL00068"
/db_xref="CDD:177008"
misc_feature 140957..141223
/gene="rplT"
/locus_tag="HPKB_0136"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature order(140957..140974,140978..140989,140996..141001,
141011..141016,141023..141067,141071..141079,
141086..141088,141098..141100,141116..141121,
141128..141133,141140..141142,141164..141172)
/gene="rplT"
/locus_tag="HPKB_0136"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature order(140996..140998,141008..141010,141017..141022,
141026..141031,141038..141040,141155..141166,
141173..141175,141191..141196,141212..141217)
/gene="rplT"
/locus_tag="HPKB_0136"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature order(141059..141061,141068..141073,141080..141082,
141089..141094,141098..141100,141170..141172,
141179..141181,141188..141190)
/gene="rplT"
/locus_tag="HPKB_0136"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene 141444..142304
/locus_tag="HPKB_0137"
/db_xref="GeneID:12340552"
CDS 141444..142304
/locus_tag="HPKB_0137"
/codon_start=1
/transl_table=11
/product="outer membrane protein HorB"
/protein_id="YP_005761674.1"
/db_xref="GI:384887163"
/db_xref="GeneID:12340552"
/translation="MKKSVIVGAISLAMTSLLSAETPKQEKAIKTSPTKKGERNAAFI
GIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPTGGLTHGALGTRGYKG
LSNQQYAINGFGFVVGYKHFFKKSPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKG
SQSFMFGYGAGTDVLFNPAIFNRENLHFGFFVGVAIGGTSWGPTNYYFKDLADEYRGS
FHPSNFQVLVNGGIRLGTKHQGFEIGLKIQTIRNNYYTASADNVPEGTTYRFTFHRPY
AFYWRYIVSF"
misc_feature 141783..142301
/locus_tag="HPKB_0137"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 142660..143085
/locus_tag="HPKB_0138"
/db_xref="GeneID:12340553"
CDS 142660..143085
/locus_tag="HPKB_0138"
/note="Candidate starts by CONSORF: 142657,142660"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761675.1"
/db_xref="GI:384887164"
/db_xref="GeneID:12340553"
/translation="MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEV
PEFRAEVNKRLKAMKEEERKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKK
TMTMKEYRQEGLDLHDCACEGPFHDHEGKKGKKPSHHQH"
misc_feature 142723..143001
/locus_tag="HPKB_0138"
/note="Protein of unknown function (DUF1104); Region:
DUF1104; pfam06518"
/db_xref="CDD:203471"
gene 143489..144358
/locus_tag="HPKB_0139"
/db_xref="GeneID:12340554"
CDS 143489..144358
/locus_tag="HPKB_0139"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761676.1"
/db_xref="GI:384887165"
/db_xref="GeneID:12340554"
/translation="MKRILFFLVATTFLLRAETDSATINTTVDPNVMFSESSTGNVKK
DRKRVLKNMVNLEKERVKNFNQYSETKMSKGDLSAFGAFFKGSLESCVDQKICYYEHK
NGKVSFVVNDREKFYKHVLKDLGTELSLPLFNWLYKGSDFGALHEQFGDMYDGYIKYL
ISMVRISQREKARKLDAVTLKKMEDQAEKDTKAAFQKRSSGELESHTDSPEFISSSKK
VQNASNPDLDSTANANALKETASKEPETSSKKEKKPKKKRRLSKKERQQQALQQEFEK
QISDSSKSENIAK"
gene complement(144963..146330)
/locus_tag="HPKB_0140"
/db_xref="GeneID:12340555"
CDS complement(144963..146330)
/locus_tag="HPKB_0140"
/note="Consensus COG by CONSORF: COG1760"
/codon_start=1
/transl_table=11
/product="L-serine deaminase (sdaA)"
/protein_id="YP_005761677.1"
/db_xref="GI:384887166"
/db_xref="GeneID:12340555"
/translation="MTSFSILSIFKIGVGPSSSHTIGPMEAGARFCGLLKGVLEQVMR
IQITLHGSLALTGKGHLSDEAVLIGLHGIYANELEIATKKALLHEALENKVLKLANQH
CIHFDYSKDLIFDNKPLARHQNALILKAFNAKNEVLKEETYYSVGGGFVYTEKELDNL
SEEGENESVAYDFSSAKELLELCQKHQKNIAEIVRLREEAMKNRPDAMMAKIYHAMLE
CYDNGANSKEKYLPGSLRVTRLAPSIKTRLEKHPTSGKDPLALIDYISLYARAIAEEN
ASGGKVVTAPTNGACAVVPSVLLYAKNHLFENLSQKAINDFLLTSAAIGYLYKKNASL
SGAEAGCQAEIGVASSMAAGGLAHLCQATTQQVLIASEIAMEHHLGLTCDPVGGLVQI
PCIERNVLGAIKAISASKLALEDEYKPKVSLDEVIATMYATGKDMNEKYKETSLGGLA
KTLEC"
misc_feature complement(144972..146321)
/locus_tag="HPKB_0140"
/note="L-serine dehydratase, iron-sulfur-dependent, single
chain form; Region: sda_mono; TIGR00720"
/db_xref="CDD:188076"
misc_feature complement(145854..146318)
/locus_tag="HPKB_0140"
/note="Serine dehydratase beta chain; Region: SDH_beta;
pfam03315"
/db_xref="CDD:202592"
misc_feature complement(144975..145781)
/locus_tag="HPKB_0140"
/note="Serine dehydratase alpha chain; Region: SDH_alpha;
pfam03313"
/db_xref="CDD:202591"
gene complement(146330..147571)
/locus_tag="HPKB_0141"
/db_xref="GeneID:12340556"
CDS complement(146330..147571)
/locus_tag="HPKB_0141"
/note="Consensus COG by CONSORF: COG0814"
/codon_start=1
/transl_table=11
/product="serine transporter (sdaC)"
/protein_id="YP_005761678.1"
/db_xref="GI:384887167"
/db_xref="GeneID:12340556"
/translation="MAQEKAVIRDPKKLNAFDLRWMASLFGTAVGAGILFLPIRAGGH
GIWAIVVMSAIIFPLTYLGHRALAYFIGSKDKEDITMVVRSHFGTQWGFLITLLYFLA
IYPICLAYGVGITNVFDHFFTNQLHLAPFHRGLLAVALVSLMMLVMVFNATIVTRICN
ALVYPLCLILLLFSLYLIPYWQGANLFVVPSFKEFVLAIWLTLPVLVFSFNHSPIIST
FTQNVEKEYGALKEYKLNQIELGTSLMLLGFVMFFVFSCVMCLNADDFMKAREQNIPI
LSYFANTLNNPLINYAGPVVAFLAIFSSFFGHYYGAKEGLEGIIIQSLKLKKASKTLS
ISVTIFLWLTITLVAYINPNILDFIENLGGPIIALILFVMPMIAFYSVSSLKRFRNFK
VDIFVFVFGGLTALSVFLGLF"
misc_feature complement(146333..147547)
/locus_tag="HPKB_0141"
/note="Amino acid permeases [Amino acid transport and
metabolism]; Region: SdaC; COG0814"
/db_xref="CDD:31156"
misc_feature complement(146363..147529)
/locus_tag="HPKB_0141"
/note="Transmembrane amino acid transporter protein;
Region: Aa_trans; cl15776"
/db_xref="CDD:210176"
gene 147754..149103
/locus_tag="HPKB_0142"
/db_xref="GeneID:12340557"
CDS 147754..149103
/locus_tag="HPKB_0142"
/note="Consensus COG by CONSORF: COG3200"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-arabinoheptulosonate-7-phosphate
synthase"
/protein_id="YP_005761679.1"
/db_xref="GI:384887168"
/db_xref="GeneID:12340557"
/translation="MSNTTWSPASWHSFKIEQHPTYKDKQELERVKKELRSYPPLVFA
GEARNLQERLAQVIDNKAFLLQGGDCAESFSQFSANRIKDMFKVMMQMAIVLTFAGSI
PIVKVGRIAGQFAKPRSNATEILDNEEVLSYRGDIINGISKKEREPKPERMLKAYHQS
VATLNLIRAFAQGGLANLEQVHRFNLDFVKNNDFGQKYQQIADRITQALGFMQACGVE
IEKTPILREVEFYTSHEALLLHYEEPLVRKDSLTNQFYDCSAHMLWIGERTRDPKGAH
VEFLRGVCNPIGVKIGPNASISEVLELCDVLNPHNIKGRLNLIVRMGSKMIKERLPKL
LQGVLKEKRHILWSIDPMHGNTVKTSLGVKTRAFDSVLDEVKSFFEIHRAEGSLASGV
HLEMTGENVTECIGGSQAITEEGLSCHYYTQCDPRLNATQALELAFLIADMLKKQRS"
misc_feature 147766..149076
/locus_tag="HPKB_0142"
/note="Class-II DAHP synthetase family; Region:
DAHP_synth_2; pfam01474"
/db_xref="CDD:144897"
gene 149393..149527
/locus_tag="HPKB_0143"
/db_xref="GeneID:12340558"
CDS 149393..149527
/locus_tag="HPKB_0143"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761680.1"
/db_xref="GI:384887169"
/db_xref="GeneID:12340558"
/translation="MRISFLAVILALLFVACHETKKQILQNEADSTPSEKTIWQPEQK
"
gene complement(149759..150217)
/locus_tag="HPKB_0144"
/db_xref="GeneID:12340559"
CDS complement(149759..150217)
/locus_tag="HPKB_0144"
/note="Consensus COG by CONSORF: COG1225"
/codon_start=1
/transl_table=11
/product="bacterioferritin comigratory protein (bcp)"
/protein_id="YP_005761681.1"
/db_xref="GI:384887170"
/db_xref="GeneID:12340559"
/translation="MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTP
GCTLEAQEFSALFSEFEKKNAVVVGVSPDNAQSHQKFISQCSLNVILLCDEDKKAANL
YKAYGKRMLYGKEHWGIIRSTFIINTQGVLEKCFYNVKAKGHAQKVLENL"
misc_feature complement(<149804..150202)
/locus_tag="HPKB_0144"
/note="Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones]; Region: AhpC; COG0450"
/db_xref="CDD:30799"
misc_feature complement(149768..150190)
/locus_tag="HPKB_0144"
/note="Peroxiredoxin (PRX) family, Bacterioferritin
comigratory protein (BCP) subfamily; composed of
thioredoxin-dependent thiol peroxidases, widely expressed
in pathogenic bacteria, that protect cells against
toxicity from reactive oxygen species by reducing...;
Region: PRX_BCP; cd03017"
/db_xref="CDD:48566"
misc_feature complement(order(149855..149857,150080..150082,
150089..150091))
/locus_tag="HPKB_0144"
/note="catalytic triad [active]"
/db_xref="CDD:48566"
gene complement(150227..150862)
/locus_tag="HPKB_0145"
/db_xref="GeneID:12340560"
CDS complement(150227..150862)
/locus_tag="HPKB_0145"
/note="Consensus COG by CONSORF: COG1556"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761682.1"
/db_xref="GI:384887171"
/db_xref="GeneID:12340560"
/translation="MSKELILKRIKEARAKHAIQGANPAYRNIIKVEFEDLVEEYKHF
QVLNKAEVIESAKENLEQAILKALENFKSKKVLHSTDLNLNFEAFKDFTLQPYDKEIE
AMREELFEIDTALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNL
SEGMQALKNQSKNGVLPTNMLLIGGPSRTADIELKTVFGVHGPQKVAIILY"
misc_feature complement(150230..150862)
/locus_tag="HPKB_0145"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1556"
/db_xref="CDD:224473"
gene complement(150855..152300)
/locus_tag="HPKB_0146"
/db_xref="GeneID:12340561"
CDS complement(150855..152300)
/locus_tag="HPKB_0146"
/note="Consensus COG by CONSORF: COG1139. Candidate starts
by CONSORF: 152306,152300"
/codon_start=1
/transl_table=11
/product="putative iron-sulfur protein"
/protein_id="YP_005761683.1"
/db_xref="GI:384887172"
/db_xref="GeneID:12340561"
/translation="MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLIKN
RYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLA
KEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIH
KNRKQIGKIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIW
LVENEGNGRMSTTACDVHVAICGIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIIT
GPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGHA
YLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRADKV
GEGRGVVKGAKSAQHSGMEKFSMKMFAKMASDGAKWRFQLKMAQFFSPLGKLLAPILP
LVKEWASVRTLPNMDTSLHAKVQHLEGVIYE"
misc_feature complement(150915..152249)
/locus_tag="HPKB_0146"
/note="iron-sulfur cluster-binding protein; Region:
TIGR00273"
/db_xref="CDD:129374"
misc_feature complement(151416..152090)
/locus_tag="HPKB_0146"
/note="Uncharacterized ACR, YkgG family COG1556; Region:
DUF162; pfam02589"
/db_xref="CDD:202298"
misc_feature complement(<151101..>151388)
/locus_tag="HPKB_0146"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature complement(150861..151145)
/locus_tag="HPKB_0146"
/note="Domain of unknown function (DUF3390); Region:
DUF3390; pfam11870"
/db_xref="CDD:152306"
gene complement(152329..153057)
/locus_tag="HPKB_0147"
/db_xref="GeneID:12340562"
CDS complement(152329..153057)
/locus_tag="HPKB_0147"
/note="Consensus COG by CONSORF: COG0247. Candidate starts
by CONSORF: 153144,153096,153078,153057"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761684.1"
/db_xref="GI:384887173"
/db_xref="GeneID:12340562"
/translation="MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQ
PSYNSGYYEETKKVVLYNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFSMVK
DFCSRVYELSEFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNV
ELIELEKEEECCGFGGTFSVKEPEISAVMVKEKIKDIESRHVDVIVSADAGCLMNIST
AMQKMGSLTKPMHFYDFLASRLGL"
misc_feature complement(152332..153057)
/locus_tag="HPKB_0147"
/note="Heterodisulfide reductase, subunit B [Energy
production and conversion]; Region: HdrB; COG2048"
/db_xref="CDD:32231"
misc_feature complement(152803..153051)
/locus_tag="HPKB_0147"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature complement(152407..152664)
/locus_tag="HPKB_0147"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene 153288..154937
/locus_tag="HPKB_0148"
/db_xref="GeneID:12340563"
CDS 153288..154937
/locus_tag="HPKB_0148"
/note="Consensus COG by CONSORF: COG1620"
/codon_start=1
/transl_table=11
/product="L-lactate permease (lctP)"
/protein_id="YP_005761685.1"
/db_xref="GI:384887174"
/db_xref="GeneID:12340563"
/translation="MEFYQVYDPLGHIWLSALVALSPIALFFISLIVFKLKGYSAGFL
SLVLSIIIALFVYKMPAQMVSASFFYGFLYGLWPIAWIVIAAIFLYNLSVKSGYFEIL
KESILTLTPDHRILVILIGFCFGSFLEGAIGFGGPVAITAAILVGLGLNPLYAAGLCL
IANTAPVAFGAVGIPITAMASVVGIPELEISQMVGRVLPIFSIGIPFFIVFLMDGFRG
IRETFPAVAVTGFSFAIAQFLSSNYLGPQLPDIISALVSLIATTLFLKFWQPKRIFTS
NGKEPTISTEKHHICKVVVAWMPFVLLTLTIIIWTQPWFKALFKEGGALAFSSFAFEF
NSISQKVFKTVPIVTEATNFPVVFKFPLILTTGTSIFLAALLSVFLLRVKISDAIGVF
GATLKEMRLPILTIGVVLAFAYVANYSGMSATLALALGDTGHVFTFFSPVVGWLGVFL
TGSDTSSNLLFGSLQMLIATQLGLPEVLFLAANTSGGVVGKMISPQSIAIACAAVGLV
GKESELFRFTVKYSIALAIIMGIVFTLIAYVFPFIIPVTPT"
misc_feature 153297..154901
/locus_tag="HPKB_0148"
/note="L-lactate transport; Region: lctP; TIGR00795"
/db_xref="CDD:162041"
misc_feature 153300..154907
/locus_tag="HPKB_0148"
/note="glycolate transporter; Provisional; Region:
PRK09695"
/db_xref="CDD:182032"
gene 154986..156641
/locus_tag="HPKB_0149"
/db_xref="GeneID:12340564"
CDS 154986..156641
/locus_tag="HPKB_0149"
/note="Consensus COG by CONSORF: COG1620"
/codon_start=1
/transl_table=11
/product="L-lactate permease (lctP)"
/protein_id="YP_005761686.1"
/db_xref="GI:384887175"
/db_xref="GeneID:12340564"
/translation="MSEFHQVYDPLGNIWLSALVALLPILLFFLSLMVFKLKGYTAAF
LSVALSAIIAVLVYKMPVSMVGSSFLYGFLYGLWPIAWIIIAAIFLYKLSVKSGYFEI
LKESVQSITLDHRILVILIGFCFGSFLEGAIGFGGPIAITAAILVGLGLSPLYSAGLC
LIANTAPVAFGAVGIPISAMASAVGVPAILISAMTGKILFFVSLFVPFFIVFLMDGFK
GIKETFPAVFIAAFSFAGAQFLSSNYLGPELPGIISALVSLVATALFLKFWQPKVIFR
SDGKVASFTKSNHHICKIYVAWSPFVILVLVIVLWIQPFFKALFEKDGLLAFSNFYFE
FNNISNRIFKSPPFVESDQSASFPVVFKFFLINTVGTSIFLAALISMLVLRVRASDAL
SVFGETLKEMRYPILTIGLVLSFAYVSNYSGISSTLALALTHTGLAFTFFSPLIGWVG
VFLTGSDTSSNLLFGSLQQLTAQRLHLPEILTLTANTVGGTLGKMISPQSIAIACAAV
GLAGKESDLFKFTVKYSLIFVAIMGVVISAIAYLIPEVVPAIK"
misc_feature 154986..156611
/locus_tag="HPKB_0149"
/note="glycolate transporter; Provisional; Region:
PRK09695"
/db_xref="CDD:182032"
misc_feature 155082..156602
/locus_tag="HPKB_0149"
/note="L-lactate permease; Region: Lactate_perm;
pfam02652"
/db_xref="CDD:145679"
gene complement(156665..157537)
/locus_tag="HPKB_0150"
/db_xref="GeneID:12340565"
CDS complement(156665..157537)
/locus_tag="HPKB_0150"
/note="Consensus COG by CONSORF: COG1194"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761687.1"
/db_xref="GI:384887176"
/db_xref="GeneID:12340565"
/translation="MMSQQTQINTVVERFYSPFLEAFPTLKDLANAQLEEVLLLWRGL
GYYSRAKNLKKSAEICVKEHNSQLPNDYQSLLKLPGIGAYTANAILCFGFREKRACVD
ANIKRVLLRLFGLDPNITAKDLQIKANDFLNLNESFNHNQALIDLGALICSPKPKCTL
CPLNPYCLGKNHPEKHTLKKKQEIIQEERYLGVVIQNNQIALEKIEQKLYFGMHHFPN
LKENLEYKLPFLGAIKHSHTKFKLNLNLYLAAIKDLKNPIRFYSLKDLETLPISSMTL
KILNFLKQKNLFGG"
misc_feature complement(157094..157537)
/locus_tag="HPKB_0150"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature complement(156668..157534)
/locus_tag="HPKB_0150"
/note="DNA glycosylase MutY; Provisional; Region:
PRK13910"
/db_xref="CDD:172427"
misc_feature complement(order(157391..157393,157508..157510,
157517..157525))
/locus_tag="HPKB_0150"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature complement(157283..157306)
/locus_tag="HPKB_0150"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature complement(order(157103..157105,157115..157117,
157274..157276))
/locus_tag="HPKB_0150"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature complement(157232..157234)
/locus_tag="HPKB_0150"
/note="active site"
/db_xref="CDD:28938"
misc_feature complement(156692..156982)
/locus_tag="HPKB_0150"
/note="Nudix hydrolase is a superfamily of enzymes found
in all three kingdoms of life, and it catalyzes the
hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+...; Region:
Nudix_Hydrolase; cl00447"
/db_xref="CDD:212606"
gene complement(157652..159100)
/locus_tag="HPKB_0151"
/db_xref="GeneID:12340566"
CDS complement(157652..159100)
/locus_tag="HPKB_0151"
/note="Consensus COG by CONSORF: COG0471"
/codon_start=1
/transl_table=11
/product="C(4)-dicarboxylates and
tricarboxylates/succinate antiporter"
/protein_id="YP_005761688.1"
/db_xref="GI:384887177"
/db_xref="GeneID:12340566"
/translation="MTKPIVSILAPFFTATLLYFLGAPDGLNPSAWLYFCIFIGMIIG
LILEPVPPGLVALSALVLCVALKIGATDEVASANMAISWGLSGYANKTVWLVFVAFIL
GLGYEKSLLGKRIALLLIRFLGQTPLGLGYAIGLSELCLAPFIPSNSARSGGILYPIV
SSIPPLMGSAPNNNPDKIGAYLMWVALASTCITSSMFLTALAPNPLAMEIATKMGVNE
ISWFSWFLAFLPCGVVLILLVPLLAYKTCKPTLKGSKEVSLWAKKELEGMGRFSLKEI
LMLSLTLLALLGWILGKPLGLHASATALIVMVLMAFCKIVSYEDIIKNKSAFNIFLLL
GSLLTMASGLKNVGFLNFIGNAAKNFLEHANLNPLIAVLFIIAFFYLSHYFFASITAH
VSALFALFVGIGSHIQGVNLQELSLFLMLSLGIMGILTPYGTGPSTIYYGSGYISSKD
FWKWGFIFGVVYLIVFLSVCVPWVKFIAYRWL"
misc_feature complement(157664..159100)
/locus_tag="HPKB_0151"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:30819"
misc_feature complement(157661..159094)
/locus_tag="HPKB_0151"
/note="Sodium:sulfate symporter transmembrane region;
Region: Na_sulph_symp; pfam00939"
/db_xref="CDD:109974"
misc_feature complement(order(157964..157999,158069..158125,
158171..158215,158237..158275,158369..158413,
158492..158527,158531..158566,158579..158614,
158636..158653,158657..158662,158669..158713,
158780..158833,158876..158899))
/locus_tag="HPKB_0151"
/note="transmembrane helices; other site"
/db_xref="CDD:29728"
gene 159270..160736
/locus_tag="HPKB_0152"
/db_xref="GeneID:12340567"
CDS 159270..160736
/locus_tag="HPKB_0152"
/note="Consensus COG by CONSORF: COG3278"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase subunit I"
/protein_id="YP_005761689.1"
/db_xref="GI:384887178"
/db_xref="GeneID:12340567"
/translation="MQENVPLSYDYSISKLFLYAMVGFGIIGMLIGIVLAFELSFPSL
NYLAGEYGIFGRLRPLHTNAVIYGFTLGGIWASWYYIGQRVLKITYHQHPFLKIVGLL
HFWLWIILLILGVISLFAGLTQSKEYAELMWPLDIIVVVAWVLWGVNMFGSMSVRREN
TIYVSLWYYIATYVGIAVMYLFNNLSVPTYFVADMGSVWHSISMYSGSNDALIQWWWG
HNAVAFVFTSGVIGTIYYFLPKESGQPIFSYKLTLFSFWSLMFVYIWAGGHHLIYSTV
PDWVQTLSSVFSVVLILPSWGTAINMLLTMRGQWHQLKESPLIKFLVLASTFYMLSTL
EGSIQAIKSVNALAHFTDWIIGHVHDGVLGWVGFTLIASMYHMTPRLFKREIYSGRLV
DFQFWIMTLGIVLYFSSMWIAGITQGMMWRDVDQYGNLTYQFIDTVKVLIPYYNIRGV
GGLMYFTGFIIFAYNIFMTITAGKKLEREPNYATPMSR"
misc_feature 159288..160727
/locus_tag="HPKB_0152"
/note="Heme-copper oxidase subunit I. Heme-copper
oxidases are transmembrane protein complexes in the
respiratory chains of prokaryotes and mitochondria which
catalyze the reduction of O2 and simultaneously pump
protons across the membrane. The superfamily is...;
Region: Heme_Cu_Oxidase_I; cl00275"
/db_xref="CDD:206949"
misc_feature order(159294..159296,159315..159317,159327..159332,
159342..159344,159498..159500,160323..160325,
160344..160346,160353..160358,160530..160535,
160617..160619)
/locus_tag="HPKB_0152"
/note="Low-spin heme binding site [chemical binding];
other site"
/db_xref="CDD:29930"
misc_feature order(159372..159374,159381..159383,159405..159407,
159414..159416,159594..159599,159627..159629,
159639..159641)
/locus_tag="HPKB_0152"
/note="D-pathway; other site"
/db_xref="CDD:29930"
misc_feature order(159885..159887,159900..159905,160302..160304,
160314..160319,160530..160532)
/locus_tag="HPKB_0152"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29930"
misc_feature order(159924..159926,160074..160079,160338..160340)
/locus_tag="HPKB_0152"
/note="Binuclear center (active site) [active]"
/db_xref="CDD:29930"
misc_feature order(159924..159926,159936..159938,159969..159971,
160074..160079,160152..160154,160161..160163)
/locus_tag="HPKB_0152"
/note="K-pathway; other site"
/db_xref="CDD:29930"
misc_feature order(160077..160079,160314..160319,160530..160535)
/locus_tag="HPKB_0152"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29930"
gene 160749..161447
/locus_tag="HPKB_0153"
/db_xref="GeneID:12340568"
CDS 160749..161447
/locus_tag="HPKB_0153"
/note="Candidate starts by CONSORF: 160743,160749"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase, monoheme subunit,
membrane-bound (fixO)"
/protein_id="YP_005761690.1"
/db_xref="GI:384887179"
/db_xref="GeneID:12340568"
/translation="MFSFLEKNPFFFTLAFIFVFAIAGLVEILPNFFKSARPIEGLRP
YTVLETAGRQIYIQEGCYHCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIG
PDLHRVGDYRTTDWHEKHMFDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVF
GVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLN
SLGNSRISANQNAK"
misc_feature 160749..161444
/locus_tag="HPKB_0153"
/note="Cbb3-type cytochrome oxidase, cytochrome c subunit
[Energy production and conversion]; Region: CcoO; COG2993"
/db_xref="CDD:32812"
misc_feature 160752..161444
/locus_tag="HPKB_0153"
/note="Cytochrome C oxidase, mono-heme subunit/FixO;
Region: FixO; cl01130"
/db_xref="CDD:207321"
gene 161458..161676
/locus_tag="HPKB_0154"
/db_xref="GeneID:12340569"
CDS 161458..161676
/locus_tag="HPKB_0154"
/note="Candidate starts by CONSORF: 161455,161458"
/codon_start=1
/transl_table=11
/product="cytochrome coxidase subunit Q"
/protein_id="YP_005761691.1"
/db_xref="GI:384887180"
/db_xref="GeneID:12340569"
/translation="MDLESLRGFAYAFFTILFTLFLYAYIFSMYRKQKKGIVDYERYG
YLALNDALEDELIEPRHKNAHDNGIKES"
misc_feature 161479..161646
/locus_tag="HPKB_0154"
/note="cytochrome c oxidase, cbb3-type, CcoQ subunit,
epsilon-Proteobacterial; Region: cbb3_Q_epsi; TIGR02736"
/db_xref="CDD:131783"
gene 161678..162556
/locus_tag="HPKB_0155"
/db_xref="GeneID:12340570"
CDS 161678..162556
/locus_tag="HPKB_0155"
/note="Consensus COG by CONSORF: COG2010"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase diheme subunit"
/protein_id="YP_005761692.1"
/db_xref="GI:384887181"
/db_xref="GeneID:12340570"
/translation="MDFLNDHINVFGLIAALVILVLTIYESSSLIKEMRDSKSQGELM
ENGHLIDGIGEFANNVPVGWIASFMCTIVWAFWYFFFGYPLNSFSQIGQYNEEVKAHN
QKFEAKWKNLGQKELVDMGQGIFLVHCSQCHGITAEGLHGSAQNLVRWGKEEGIMDTI
KHGSKGMDYLAGEMPAMELDEKDAKAIASYVMAEISSVKKTKNPQLIDKGKELFESMG
CTGCHGNDGKGLQENQVFAADLTAYGTENFLRNILTHGKKGNIGHMPSFKYKNFSDLQ
VKALAEFIQSLKPLED"
misc_feature 161780..162538
/locus_tag="HPKB_0155"
/note="cytochrome c oxidase, cbb3-type, subunit III;
Region: ccoP; TIGR00782"
/db_xref="CDD:129864"
misc_feature 162038..162253
/locus_tag="HPKB_0155"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
misc_feature 162302..162541
/locus_tag="HPKB_0155"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene 162567..162773
/locus_tag="HPKB_0156"
/db_xref="GeneID:12340571"
CDS 162567..162773
/locus_tag="HPKB_0156"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761693.1"
/db_xref="GI:384887182"
/db_xref="GeneID:12340571"
/translation="MKFLNGLAGNLLIVVILLCVAVFFTLKAIHIQKEQATNYYRYKD
INALETKNTQNRANYELVNQGSKK"
misc_feature 162576..162746
/locus_tag="HPKB_0156"
/note="Family of unknown function (DUF4006); Region:
DUF4006; pfam13179"
/db_xref="CDD:205360"
gene 162874..163458
/locus_tag="HPKB_0157"
/db_xref="GeneID:12340572"
CDS 162874..163458
/locus_tag="HPKB_0157"
/note="Consensus COG by CONSORF: COG0443"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761694.1"
/db_xref="GI:384887183"
/db_xref="GeneID:12340572"
/translation="MRILWLVIAFVCCLGANDYVLNNSKGRLVEKSVVFVEGVSKELY
LKTGVRFVIDMTDFEKNPIALAAKKERQNYQEGFLKQLKPPFVVFFFYHDAQKIELVA
NPKDLLDTDKIFFEKIAPLLPTNPKEYTPQRISAMLINGYSVAVDALAQKYRVNITQN
FNAPKGVTFVKVVIYILLLTLLGAFLGLYFFKKS"
gene 163470..164051
/locus_tag="HPKB_0158"
/db_xref="GeneID:12340573"
CDS 163470..164051
/locus_tag="HPKB_0158"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761695.1"
/db_xref="GI:384887184"
/db_xref="GeneID:12340573"
/translation="MKEKNFWPLGIMSVLILGLGIVVFLVVFALKNSPKNDLVYFKGH
NEVDLNFNAMLKTYENFKSNYRFLVGLKPLTEGSKTPILPYFSKGTHGDKKLQENLLK
NALILEKSNTLHAQLQPLKPALDSPNIQVYLAFYPSPSQPRLLGTLDCEIACEPLRFD
LLESDKMGRYKILFKFVFKNKEELILEQLAFFK"
gene 164140..164907
/locus_tag="HPKB_0159"
/db_xref="GeneID:12340574"
CDS 164140..164907
/locus_tag="HPKB_0159"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761696.1"
/db_xref="GI:384887185"
/db_xref="GeneID:12340574"
/translation="MGFLKVFKHDALGQVGNVVVGNFLITLTILAVCFSSQSAEETTM
LTLSYTLFFVLGAFLLIAISVGAIKNLNALFSKRGVLSFSLPISLESLLLPKILLPMV
FFIFSLFWFVASVRLGYYLFNAQSSVLFILHTALKTFVLKPTKTLGIALFLGLVLMKF
LFVLSVLNAARIKKARFLLGGLLFILVGVVLELAFNSLLPLMSSSLSINEGFYYFLQQ
QELQENKYYLLWGVDFLKILLLYAMSRYLLTHKLELD"
gene complement(164904..165770)
/locus_tag="HPKB_0160"
/db_xref="GeneID:12340575"
CDS complement(164904..165770)
/locus_tag="HPKB_0160"
/note="Consensus COG by CONSORF: COG2107. Candidate starts
by CONSORF: 165875,165869,165845,165770"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761697.1"
/db_xref="GI:384887186"
/db_xref="GeneID:12340575"
/translation="MISVAHSPDADDIFMYYAIKFGWIDCPIKNKTFHNIALDIETLN
QEALKNTYDVSAISFGLYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVAL
SGEHTTNALLFKIYYKHARIAYMNFLDIEKAVLEEKVHAGVLIHENILDFHNELEVEK
ELWDVWQELIKVDDLPLPLGGMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGML
LERALIRVNMERLQTYLSLYANETSTRLSEIQILAIDKLFELGYQHGFYASLLKTKDC
LLTDEYLQYRFS"
misc_feature complement(164934..165770)
/locus_tag="HPKB_0160"
/note="Predicted periplasmic solute-binding protein
[General function prediction only]; Region: COG2107"
/db_xref="CDD:32290"
gene 165869..166912
/gene="recA"
/locus_tag="HPKB_0161"
/db_xref="GeneID:12340576"
CDS 165869..166912
/gene="recA"
/locus_tag="HPKB_0161"
/note="Consensus COG by CONSORF: COG0468"
/codon_start=1
/transl_table=11
/product="recombinase A"
/protein_id="YP_005761698.1"
/db_xref="GI:384887187"
/db_xref="GeneID:12340576"
/translation="MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTG
SLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDV
HYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALK
FYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEI
IDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANEITLKIKESIGSNEE
IMPLPDEPLEEME"
misc_feature 165869..166858
/gene="recA"
/locus_tag="HPKB_0161"
/note="recombinase A; Provisional; Region: recA; PRK09354"
/db_xref="CDD:236476"
misc_feature 165884..166861
/gene="recA"
/locus_tag="HPKB_0161"
/note="RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction of
the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange; Region: recA; cd00983"
/db_xref="CDD:238483"
misc_feature order(165908..165913,165917..165922,165929..165931,
165941..165955,166160..166165,166169..166189,
166202..166207,166511..166513,166523..166525,
166667..166669,166805..166807)
/gene="recA"
/locus_tag="HPKB_0161"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:238483"
misc_feature 166067..166090
/gene="recA"
/locus_tag="HPKB_0161"
/note="Walker A motif; other site"
/db_xref="CDD:238483"
misc_feature order(166073..166093,166157..166159,166169..166171,
166178..166180,166301..166303,166451..166453,
166553..166555,166592..166594,166658..166669)
/gene="recA"
/locus_tag="HPKB_0161"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238483"
misc_feature 166289..166303
/gene="recA"
/locus_tag="HPKB_0161"
/note="Walker B motif; other site"
/db_xref="CDD:238483"
gene 166924..168204
/gene="eno"
/locus_tag="HPKB_0162"
/db_xref="GeneID:12340577"
CDS 166924..168204
/gene="eno"
/locus_tag="HPKB_0162"
/note="Consensus COG by CONSORF: COG0148. Candidate starts
by CONSORF: 166921,166924"
/codon_start=1
/transl_table=11
/product="phosphopyruvate hydratase"
/protein_id="YP_005761699.1"
/db_xref="GI:384887188"
/db_xref="GeneID:12340577"
/translation="MLTIKDIHALEVMDSRGNPTIQANVILSDNTKASAIVPSGASTG
KREALELRDNDKTRFLGKGVLRACENINSVIKHHLIGLEAINQAFVDERLRALDGTPN
YANLGANAVLGVSMALARASAKALNLPLYRYLGGANALTLPVPMLNIINGGTHANNSI
DFQEYMIMPLGFESFKEALRASAEVYHTLKKLLDGKNQLTSVGDEGGFAPNFNNNVEP
LEVISQAIEKAGYKLGEEIALALDVASSELVDENFNYHLKGENKILDSHELVAYYKEL
VAKYPIVSIEDGLSEDDWEGWAFLSKELGRQIQLVGDDLFVTNASLLQKGIEKNIANA
ILIKPNQIGTISETLETIRLAKHHAYQCVMSHRSGESEDSFIADFAVALNTGEIKTGS
TARSERIAKYNRLLEIEHELKGGIYIGKELFKHD"
misc_feature 166924..168198
/gene="eno"
/locus_tag="HPKB_0162"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:178845"
misc_feature 166939..168156
/gene="eno"
/locus_tag="HPKB_0162"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:48188"
misc_feature order(166945..166947,166951..166977,166987..166989,
167023..167025,167389..167397,167458..167463,
167470..167475,167482..167487,167524..167529,
167548..167550,167554..167556,168031..168039,
168106..168114,168118..168123,168130..168132,
168139..168144,168151..168153)
/gene="eno"
/locus_tag="HPKB_0162"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48188"
misc_feature order(167047..167049,167647..167649,167779..167781,
167860..167862)
/gene="eno"
/locus_tag="HPKB_0162"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48188"
misc_feature order(167386..167388,167536..167538,167935..167937,
168019..168027,168088..168090)
/gene="eno"
/locus_tag="HPKB_0162"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:48188"
gene 168197..168472
/locus_tag="HPKB_0163"
/db_xref="GeneID:12340578"
CDS 168197..168472
/locus_tag="HPKB_0163"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761700.1"
/db_xref="GI:384887189"
/db_xref="GeneID:12340578"
/translation="MTSGLFENDEIKDNKVRDFFYSHSSLIVFFLLLLWFGYYLGKLL
FGGSSLEVYLDLRDKHERLQQEITELQSKNVRLQKRLFELRELRPRD"
gene 168488..169084
/locus_tag="HPKB_0164"
/db_xref="GeneID:12340579"
CDS 168488..169084
/locus_tag="HPKB_0164"
/note="Consensus COG by CONSORF: COG0860. Candidate starts
by CONSORF: 168482,168488"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761701.1"
/db_xref="GI:384887190"
/db_xref="GeneID:12340579"
/translation="MLKKMVGLVVVLSVLLARDNPFEPEINSKNLQGSFNGIYDSYFK
EIHVDLPTSARILKQITLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHPLNPVAFEK
RYQIQDFDFSMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFF
SQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLK"
misc_feature 168851..169081
/locus_tag="HPKB_0164"
/note="AMIN domain; Region: AMIN; pfam11741"
/db_xref="CDD:204728"
gene 169089..169577
/gene="aroK"
/locus_tag="HPKB_0165"
/db_xref="GeneID:12340580"
CDS 169089..169577
/gene="aroK"
/locus_tag="HPKB_0165"
/note="Consensus COG by CONSORF: COG0703"
/codon_start=1
/transl_table=11
/product="shikimic acid kinase I"
/protein_id="YP_005761702.1"
/db_xref="GI:384887191"
/db_xref="GeneID:12340580"
/translation="MRHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSV
REIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHDNLKGLGTTFYLKMDFE
TLIKRLNQKEREKRPLLNDLTQAKELFEKRQALYEKNASFIIDARGGLNNSLKQVLQF
IA"
misc_feature 169089..169574
/gene="aroK"
/locus_tag="HPKB_0165"
/note="Shikimate kinase [Amino acid transport and
metabolism]; Region: AroK; COG0703"
/db_xref="CDD:31047"
misc_feature 169098..169532
/gene="aroK"
/locus_tag="HPKB_0165"
/note="Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway which
converts erythrose-4-phosphate to chorismic acid, found in
bacteria, fungi and plants. Chorismic acid is a important
intermediate in the synthesis...; Region: SK; cd00464"
/db_xref="CDD:30188"
misc_feature order(169119..169136,169407..169409,169434..169436)
/gene="aroK"
/locus_tag="HPKB_0165"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:30188"
misc_feature order(169131..169133,169179..169181,169185..169187)
/gene="aroK"
/locus_tag="HPKB_0165"
/note="magnesium binding site [ion binding]; other site"
/db_xref="CDD:30188"
misc_feature order(169185..169187,169257..169259,169266..169268,
169323..169331,169482..169484)
/gene="aroK"
/locus_tag="HPKB_0165"
/note="putative shikimate binding site; other site"
/db_xref="CDD:30188"
gene 169599..170555
/locus_tag="HPKB_0166"
/db_xref="GeneID:12340581"
CDS 169599..170555
/locus_tag="HPKB_0166"
/note="Consensus COG by CONSORF: COG0840. Candidate starts
by CONSORF: 169596,169599"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761703.1"
/db_xref="GI:384887192"
/db_xref="GeneID:12340581"
/translation="MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQI
RKMHAEIKMAKSFFVLDAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHVSFSDK
YYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEIS
SPSKYFRAFSEGSMVMYFMISIMLTLVSLLLFVKCTSSFWTAIVNFSSFDIKEVFHPI
VLLTLALATFDLVKAIFEEEVLGKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFK
FSVSEPDKITYAVYLAIGVAVLLISLAIYVKFAYSVLPKRER"
misc_feature 169944..>170057
/locus_tag="HPKB_0166"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
gene complement(170552..171670)
/locus_tag="HPKB_0167"
/db_xref="GeneID:12340582"
CDS complement(170552..171670)
/locus_tag="HPKB_0167"
/note="Consensus COG by CONSORF: COG1442"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide 1,2-glycosyltransferase"
/protein_id="YP_005761704.1"
/db_xref="GI:384887193"
/db_xref="GeneID:12340582"
/translation="MSITIPIVIAFDNHYAIPAGVSLYSMLACAKLENPQSQNDNKKL
FYKIHCLVDNLSLENQCKLKETLAPFSAFMSVDFLDISTPNLHTTPIEPSVIDKIHEA
FLQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGYYF
GAAKDFSSPKSPKHFQTERERAPRQAFSLYEHYLKEKDIKILYENHYNVGFLIVNLKL
WRADRLEERLLNLTHQKGQCVFCPEQDLLTLACYQKVLILPYIYNTHPFMVNQKRFIP
NRQEIVMLHFYFVGKPWISPTALYSKEWHEILLKTPFYAEHSVKFLKQMTEFLSLKDK
QKTFEFLAPLLNPKTLLEYVFFRLNRIFKRLKEKFFNS"
misc_feature complement(170564..171661)
/locus_tag="HPKB_0167"
/note="Lipopolysaccharide biosynthesis proteins,
LPS:glycosyltransferases [Cell envelope biogenesis, outer
membrane]; Region: RfaJ; COG1442"
/db_xref="CDD:31631"
misc_feature complement(170792..171658)
/locus_tag="HPKB_0167"
/note="A4GalT_like proteins catalyze the addition of
galactose or glucose residues to the lipooligosaccharide
(LOS) or lipopolysaccharide (LPS) of the bacterial cell
surface; Region: GT8_A4GalT_like; cd04194"
/db_xref="CDD:133037"
misc_feature complement(order(170798..170800,170807..170812,
170816..170818,170873..170875,170939..170944,
171041..171049,171176..171178,171251..171259,
171308..171310,171317..171319,171626..171631,
171635..171643))
/locus_tag="HPKB_0167"
/note="Ligand binding site; other site"
/db_xref="CDD:133037"
misc_feature complement(order(170816..170818,171251..171253,
171257..171259))
/locus_tag="HPKB_0167"
/note="metal-binding site"
/db_xref="CDD:133037"
gene 171827..172741
/locus_tag="HPKB_0168"
/db_xref="GeneID:12340583"
CDS 171827..172741
/locus_tag="HPKB_0168"
/note="Consensus COG by CONSORF: COG0790"
/codon_start=1
/transl_table=11
/product="Sel1 repeat-containing protein"
/protein_id="YP_005761705.1"
/db_xref="GI:384887194"
/db_xref="GeneID:12340583"
/translation="MIKSWIKKWFLILFLMASCSSYLVATTGEKYFKMATQAFKRGDY
HKAVAFYKRSCNLRVGVSCTSLGSMYEDGDGVDQNIPKAVFYYKRGCNLRNHLACASL
GSMYEDGDGVQKDLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALSLSK
YACSLDYGISCNFAGYMYRNAKGVEKDLKKALTNFKRGCHLKDGASCVSLGYMYEAGL
YVRQNEEQALNLYKKGCSLKEGSGCHNVAVMYYTGKGAPKDLDKAILYYKKGCTLGFS
GSCKILEVVGKSDDLQDDAQNDTQDDTQ"
misc_feature 171854..172681
/locus_tag="HPKB_0168"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 172010..172111
/locus_tag="HPKB_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 172112..172216
/locus_tag="HPKB_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 172226..172327
/locus_tag="HPKB_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 172334..172435
/locus_tag="HPKB_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 172436..172540
/locus_tag="HPKB_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 172550..172648
/locus_tag="HPKB_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(173509..174231)
/locus_tag="HPKB_0169"
/db_xref="GeneID:12340584"
CDS complement(173509..174231)
/locus_tag="HPKB_0169"
/note="Consensus COG by CONSORF: COG0217"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761706.1"
/db_xref="GI:384887195"
/db_xref="GeneID:12340584"
/translation="MGRAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKEGGSEPDTN
AKLRTAILNAKAQNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMTDNP
TRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALID
YGLEELEEVEDKIIIRGDYNSFKLLNEGFESLRLPILKASLQRIATTPIELNDEQMEL
TEKLLDRIEDDDDVVALYTNIE"
misc_feature complement(173512..174231)
/locus_tag="HPKB_0169"
/note="hypothetical protein; Provisional; Region:
PRK12378"
/db_xref="CDD:183483"
gene complement(174232..175203)
/gene="hemB"
/locus_tag="HPKB_0170"
/db_xref="GeneID:12340585"
CDS complement(174232..175203)
/gene="hemB"
/locus_tag="HPKB_0170"
/note="Consensus COG by CONSORF: COG0113"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_005761707.1"
/db_xref="GI:384887196"
/db_xref="GeneID:12340585"
/translation="MFKRLRRLRSSENLRAMIREMRLNIDDFIAPLFVIESDSYIKNE
ISSMPGVYQMSIEPLLKECEELVGLGIKAVLLFGIPKHKDATGSHALNKDHIVAKATK
EVKKRFKDLIVIADLCFCEYTDHGHCGILEKASVSNDKTLEILNLQGLILAESGVDIL
APSNMMDGNVLSLRKVLDKAGYFYTPIMSYSTKFASSYYGPFRDVANSAPSFGDRKSY
QMDYANKKEALLESLEDEKQGADILMVKPALAYLDIVKEIRDHTLLPLALYNVSGEYA
MLKLAQKHNLINYESVLLETMTCFKRAGADMIISYHAKEVANLLQRN"
misc_feature complement(174244..175170)
/gene="hemB"
/locus_tag="HPKB_0170"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region: ALAD_PBGS;
cd00384"
/db_xref="CDD:88598"
misc_feature complement(order(174298..174300,174307..174309,
174319..174321,174373..174375,174445..174459,
174511..174516,174523..174525,174541..174543,
174550..174552,174610..174618,174703..174708,
174787..174792,175057..175059,175066..175068,
175141..175143))
/gene="hemB"
/locus_tag="HPKB_0170"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88598"
misc_feature complement(order(174271..174273,174388..174390,
174397..174399,174466..174468,174547..174549,
174559..174561,174580..174582,174595..174600,
174607..174609,174625..174627,174715..174717,
174820..174822,174844..174846,174850..174852,
174856..174858))
/gene="hemB"
/locus_tag="HPKB_0170"
/note="active site"
/db_xref="CDD:88598"
misc_feature complement(order(174466..174468,174625..174627))
/gene="hemB"
/locus_tag="HPKB_0170"
/note="Schiff base residues; other site"
/db_xref="CDD:88598"
gene complement(175213..176553)
/locus_tag="HPKB_0171"
/db_xref="GeneID:12340586"
CDS complement(175213..176553)
/locus_tag="HPKB_0171"
/note="Consensus COG by CONSORF: COG0642"
/codon_start=1
/transl_table=11
/product="osmolarity sensor protein"
/protein_id="YP_005761708.1"
/db_xref="GI:384887197"
/db_xref="GeneID:12340586"
/translation="MRFSIFFKVVALFMVTLFSFGAFAYYFVSSQISHENYQNEMRHY
QFVTTINEILNNYSDYRAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEVF
KFSDMVFILLKKDEHFVLYKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLREL
RSQVKRFAQGDKSVSCKSKQKDEIGDLANEFDNCIQKINAMNESRVLFLRSIMHELRT
PITKGKILSSMLKEELSCKRFSSIFDHLNMLIEQFARIEQLASKNYGSNKEKFLMSDL
IDKIEKMLLIDEDKESPIHVSSSNYIIEADFELFAIALKNMVDNAIKYSDDKQVFLDF
VGNNLVVSNKSKPLKEDFEKYLQPYFKSSNPSQTHGFGLGMYIIKNALEAMGLNLSYH
YSNGRICFTIHDCVFNSFYDLEEDDEELPPPENLKEASGMKGIEKASYGVKEKQ"
misc_feature complement(175345..176082)
/locus_tag="HPKB_0171"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(175945..176082)
/locus_tag="HPKB_0171"
/note="HAMP (Histidine kinases, Adenylyl cyclases, Methyl
binding proteins, Phosphatases) domain; Region: HAMP;
smart00304"
/db_xref="CDD:197640"
misc_feature complement(175777..175950)
/locus_tag="HPKB_0171"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(175777..175779,175786..175788,
175798..175800,175807..175809,175819..175821,
175876..175878,175885..175887,175897..175899,
175906..175908,175918..175920,175930..175932))
/locus_tag="HPKB_0171"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(175912..175914)
/locus_tag="HPKB_0171"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(175345..175626)
/locus_tag="HPKB_0171"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(175354..175356,175360..175362,
175375..175377,175381..175383,175429..175440,
175510..175515,175519..175521,175525..175527,
175531..175533,175585..175587,175594..175596,
175606..175608))
/locus_tag="HPKB_0171"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(175594..175596)
/locus_tag="HPKB_0171"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(175432..175434,175438..175440,
175513..175515,175519..175521))
/locus_tag="HPKB_0171"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(176579..177256)
/locus_tag="HPKB_0172"
/db_xref="GeneID:12340587"
CDS complement(176579..177256)
/locus_tag="HPKB_0172"
/note="Consensus COG by CONSORF: COG0745"
/codon_start=1
/transl_table=11
/product="putative transcriptional regulator"
/protein_id="YP_005761709.1"
/db_xref="GI:384887198"
/db_xref="GeneID:12340587"
/translation="MIEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGLSAANTQ
NYDLLLLDLTLPNLDGLEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKP
YDPKELLARIQSLLRRSHKKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEIL
SLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRG
IGYKLEY"
misc_feature complement(176585..177247)
/locus_tag="HPKB_0172"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature complement(176909..177244)
/locus_tag="HPKB_0172"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(176951..176956,176963..176965,
177020..177022,177077..177079,177101..177103,
177230..177235))
/locus_tag="HPKB_0172"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(177101..177103)
/locus_tag="HPKB_0172"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(177077..177085,177089..177094))
/locus_tag="HPKB_0172"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(176948..176956)
/locus_tag="HPKB_0172"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature complement(176588..176857)
/locus_tag="HPKB_0172"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature complement(order(176597..176599,176612..176614,
176648..176653,176675..176677,176684..176686,
176738..176743,176798..176800))
/locus_tag="HPKB_0172"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene complement(177489..177959)
/locus_tag="HPKB_0173"
/db_xref="GeneID:12340588"
CDS complement(177489..177959)
/locus_tag="HPKB_0173"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761710.1"
/db_xref="GI:384887199"
/db_xref="GeneID:12340588"
/translation="MAGRMELKNIISETLSEIEKMAKTIDDGFNTAQRTLSFFKTPSH
LQNTPKNANTPLESKNAAKIETQEKITEEKEEEAKEIITEEIVQENPTQAPIPNERVF
LKGLLERTLVLFKGMQALEEKEAMKRLDLVARFLQYQLSALEKRLESLERENTE"
gene complement(177938..178201)
/locus_tag="HPKB_0174"
/db_xref="GeneID:12340589"
CDS complement(177938..178201)
/locus_tag="HPKB_0174"
/note="Consensus COG by CONSORF: COG0457"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761711.1"
/db_xref="GI:384887200"
/db_xref="GeneID:12340589"
/translation="MPLETITLARIYEEQGFFEEALQIYTNILKKTPDHAEALKQMKR
LEKIQKNLAPFKHDALLERHYLNFIKGDRLSVENLEKWLVEWN"
gene complement(178246..179514)
/locus_tag="HPKB_0175"
/db_xref="GeneID:12340590"
CDS complement(178246..179514)
/locus_tag="HPKB_0175"
/note="Consensus COG by CONSORF: COG0826"
/codon_start=1
/transl_table=11
/product="putative protease"
/protein_id="YP_005761712.1"
/db_xref="GI:384887201"
/db_xref="GeneID:12340590"
/translation="MNQVELLSPAGNLKKLKIALNYGADAVYGGVSHFSLRNRASKEF
TLETFKEGIDYAHALNKKVYATINGFPFNSQLKLLEEHIYKMAELEPDAFIIAAPGVV
KLASKIAPHIPIHLSTQANVLNLLDAQVFYDLGVKRIVCARELSLNDAIEIKKALPDL
ELEIFVHGSMCFAFSGRCLISALQKGRVPNRGSCANDCRFDYEYYVKNPDNGVMMRLV
EEEGVGTHIFNAKDLNLSGHIAEILSSNAISALKIEGRTKSSYYAAQTTRIYRLAVDD
FYHNTLKPSFYASELNTLKNRGFTDGYLMRRPFERLDTQNHQTAISEGDFQVNGEITE
DGRFFACKFTTTTNIAYEIIAPKNAAITPIVNEIGKIYTFEKRSYLVLYKILLENNTE
LETIHSGNVNLVRLPAPLPAFSFLRTQVRV"
misc_feature complement(178462..179514)
/locus_tag="HPKB_0175"
/note="Collagenase and related proteases
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0826"
/db_xref="CDD:31168"
misc_feature complement(178591..179289)
/locus_tag="HPKB_0175"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:201619"
gene complement(179517..180236)
/locus_tag="HPKB_0176"
/db_xref="GeneID:12340591"
CDS complement(179517..180236)
/locus_tag="HPKB_0176"
/note="Consensus COG by CONSORF: COG0840"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761713.1"
/db_xref="GI:384887202"
/db_xref="GeneID:12340591"
/translation="MTQEELDALMNGGDLESLEALEAKEETKEESKEGKEDSNYSEKM
TVKKEDAEKYGKISPNEWPPPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGTSA
EKIAKMVKKIQEPLQKHQEIFDNLHGHFPHVESFKTALNEQQEILNALKSIEEEAANC
SDSSMQAMDIMQFQDIHRQKIERVVNVMRALSQYMNSLFEGKIDDSKRVSSATFITGD
DDKDLASADDIEALIASFGAK"
gene complement(180311..181402)
/gene="prfB"
/locus_tag="HPKB_0177"
/db_xref="GeneID:12340592"
CDS complement(180311..181402)
/gene="prfB"
/locus_tag="HPKB_0177"
/note="Consensus COG by CONSORF: COG1186. Candidate starts
by CONSORF: 181468,181456,181402"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_005761714.1"
/db_xref="GI:384887203"
/db_xref="GeneID:12340592"
/translation="MDNYTYSELLKSLQNKCDNIALIIKPEKIKQELERIEKEQEDPN
FWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESAELFELAQNDNDEVTLSLLYEEA
PILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQDWASILYRMYLRWAERRGF
KSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLVRISPFDANAKRHTSFAS
VQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
RSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWGHQIRSYVLAPYQQVKDA
RSNTAYSNVEAILDGDIDAILEGVLIAKA"
misc_feature complement(180314..181399)
/gene="prfB"
/locus_tag="HPKB_0177"
/note="peptide chain release factor 2; Region: prfB;
TIGR00020"
/db_xref="CDD:211537"
misc_feature complement(180821..181153)
/gene="prfB"
/locus_tag="HPKB_0177"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature complement(180398..180691)
/gene="prfB"
/locus_tag="HPKB_0177"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene complement(181461..182479)
/locus_tag="HPKB_0178"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340593"
gene complement(182489..183256)
/gene="fliR"
/locus_tag="HPKB_0180"
/db_xref="GeneID:12340594"
CDS complement(182489..183256)
/gene="fliR"
/locus_tag="HPKB_0180"
/note="Consensus COG by CONSORF: COG1684"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FliR"
/protein_id="YP_005761715.1"
/db_xref="GI:384887204"
/db_xref="GeneID:12340594"
/translation="MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRG
ALSLYVSAIFYPTLEFSNAAYTPEGFIIACLCELFLGVCASIFLQIVFASLVFATDSI
SFSMGLTMASAYDPISGSQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLG
QFVFEPALAKNIIKAFSHLFVIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGF
PVKIAIGFVGIILIASAIMGRFKEEISLAFSAISKIF"
misc_feature complement(182492..183253)
/gene="fliR"
/locus_tag="HPKB_0180"
/note="Flagellar biosynthesis pathway, component FliR
[Cell motility and secretion / Intracellular trafficking
and secretion]; Region: FliR; COG1684"
/db_xref="CDD:224598"
gene complement(183250..183978)
/locus_tag="HPKB_0181"
/db_xref="GeneID:12340595"
CDS complement(183250..183978)
/locus_tag="HPKB_0181"
/note="Consensus COG by CONSORF: COG2101. Candidate starts
by CONSORF: 184026,184002,183978"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761716.1"
/db_xref="GI:384887205"
/db_xref="GeneID:12340595"
/translation="MVLSLSILKKSFNDFLSARMLLINLGPVLLSLAFFGAVFYYNGA
NIVGYCQTLLPQSLNGYSHSQGFFASMFAWVFKALVYFLVFWIVILLSLVINIFASVF
YTPLVVSYLHQKHYPHVVLEEFGSILFSIKYFLKSLIFMLLWMAVLTPFYFIPFIGVF
GVFFSIVPHFLFFKNTMSLDIASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFF
NFFATLLQTLMLTHYFFILKEKEC"
misc_feature complement(183313..183957)
/locus_tag="HPKB_0181"
/note="Etoposide-induced protein 2.4 (EI24); Region: EI24;
pfam07264"
/db_xref="CDD:203606"
gene 184458..185357
/locus_tag="HPKB_0182"
/db_xref="GeneID:12340596"
CDS 184458..185357
/locus_tag="HPKB_0182"
/note="Consensus COG by CONSORF: COG0760"
/codon_start=1
/transl_table=11
/product="Protein maturation protease (Peptidylprolyl
isomerase)"
/protein_id="YP_005761717.1"
/db_xref="GI:384887206"
/db_xref="GeneID:12340596"
/translation="MKKNILNLALVGALSASFLMAKPAHNANNATHNTKKTTDSSAGV
LATVDGRPITKSDFDMIKQRNPNFDFDKLKEKEKEALIDQAIRTALVENEAKTEKLDS
TPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHAR
HILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQ
MAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEK
LFQERMNQKIEELRKHAKIVINK"
misc_feature <184734..185351
/locus_tag="HPKB_0182"
/note="peptidylprolyl isomerase; Provisional; Region:
prsA; PRK00059"
/db_xref="CDD:178832"
misc_feature 184938..185213
/locus_tag="HPKB_0182"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:201365"
gene 185374..186297
/gene="fba"
/locus_tag="HPKB_0183"
/db_xref="GeneID:12340597"
CDS 185374..186297
/gene="fba"
/locus_tag="HPKB_0183"
/note="Consensus COG by CONSORF: COG0191"
/codon_start=1
/transl_table=11
/product="fructose-bisphosphate aldolase"
/protein_id="YP_005761718.1"
/db_xref="GI:384887207"
/db_xref="GeneID:12340597"
/translation="MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPL
FIQASEGAIKYMGIDMAVGMVKTMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVM
IDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEA
EQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDD
VRKSYLDAGGDLKGSKGVPFEFLQESIKGGINKVNTDTDLRIAFIAEVRKVANEDKSQ
FDLRKFFSPAQLALKNVVKERMKLLGSANKI"
misc_feature 185386..186288
/gene="fba"
/locus_tag="HPKB_0183"
/note="Tagatose-1,6-bisphosphate (TBP) aldolase and
related Type B Class II aldolases. TBP aldolase is a
tetrameric class II aldolase that catalyzes the reversible
condensation of dihydroxyacetone phosphate with
glyceraldehyde 3-phsophate to produce tagatose 1; Region:
TBP_aldolase_IIB; cd00947"
/db_xref="CDD:238477"
misc_feature 185389..186291
/gene="fba"
/locus_tag="HPKB_0183"
/note="fructose-bisphosphate aldolase; Provisional;
Region: PRK09197"
/db_xref="CDD:236406"
misc_feature order(185449..185457,185464..185466,185524..185526,
185533..185541,185551..185553,185563..185565,
185572..185577,185797..185799,186139..186144,
186148..186153,186160..186162,186172..186174,
186181..186183)
/gene="fba"
/locus_tag="HPKB_0183"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:238477"
misc_feature order(185617..185622,185908..185916,185920..185922,
186001..186006,186010..186012,186130..186132,
186136..186141)
/gene="fba"
/locus_tag="HPKB_0183"
/note="active site"
/db_xref="CDD:238477"
misc_feature order(185620..185622,185911..185913,186001..186003)
/gene="fba"
/locus_tag="HPKB_0183"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:238477"
misc_feature order(185908..185910,185914..185916,185920..185922,
186004..186006,186010..186012)
/gene="fba"
/locus_tag="HPKB_0183"
/note="Na+ binding site [ion binding]; other site"
/db_xref="CDD:238477"
gene 186319..186882
/gene="efp"
/locus_tag="HPKB_0184"
/db_xref="GeneID:12340598"
CDS 186319..186882
/gene="efp"
/locus_tag="HPKB_0184"
/note="Consensus COG by CONSORF: COG0231"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_005761719.1"
/db_xref="GI:384887208"
/db_xref="GeneID:12340598"
/translation="MAIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKS
FLDGKVIEKTFHAGDKCEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEA
SKWMLDGMQVQVLLHNDKAISVDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAV
VQVPFHVLEGEIIKVNTETEEYLEKVK"
misc_feature 186325..186879
/gene="efp"
/locus_tag="HPKB_0184"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:234788"
misc_feature 186331..186498
/gene="efp"
/locus_tag="HPKB_0184"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature 186520..186699
/gene="efp"
/locus_tag="HPKB_0184"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:239916"
misc_feature order(186586..186588,186661..186663,186676..186681)
/gene="efp"
/locus_tag="HPKB_0184"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239916"
misc_feature 186706..186873
/gene="efp"
/locus_tag="HPKB_0184"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:240220"
misc_feature order(186793..186795,186844..186846,186859..186864)
/gene="efp"
/locus_tag="HPKB_0184"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240220"
gene 187203..187508
/locus_tag="HPKB_0185"
/db_xref="GeneID:12340599"
CDS 187203..187508
/locus_tag="HPKB_0185"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761720.1"
/db_xref="GI:384887209"
/db_xref="GeneID:12340599"
/translation="MSLGIIGDSASKKTCLWLKNLPPLKHTNIVDPGEFIEFKSGKKI
AKWYSDGLTKTKSAKERQIWRSKTFPGFAKAMAEQWGEFVKNEMFKKVKNESLFEKS"
gene 187483..188829
/locus_tag="HPKB_0186"
/db_xref="GeneID:12340600"
CDS 187483..188829
/locus_tag="HPKB_0186"
/note="Consensus COG by CONSORF: COG1401"
/codon_start=1
/transl_table=11
/product="Type II restriction-modification system
restriction subunit"
/protein_id="YP_005761721.1"
/db_xref="GI:384887210"
/db_xref="GeneID:12340600"
/translation="MKVYLRKVDNQCINGKRISITKGILKHFFDNANNQDEVDMKGIL
SDYNDKVSILLATDPRFGGGIYRIIRAEEDKIKENRSDYELKADDILLFTYISYKKYT
LEIILPTDTRYNVLNGLISNRHLLVFSENETSSLSDNKIDESVRIDGGKNIILYGVPG
SGKSYTLQRDYCNDNSVVEKIVFHPDYSYSDFVGQIMPSVDDSGIVSYKFNPGPFTNI
LKKAYHNPQIKHVLVIDEINRGNAPAIFGEIFQLLDRLKHDKDGFKKGSSEYAINNMD
IANIVHSDKNASIRIPSNLWIIATMNTSDQNVFTLDTAFQRRFSMQLIENSFENVDDD
FKNMKILDTDITWQKFCTTINEKIAQNNEGLSSMENKRFGVYFVNIDDLKSKENFAHK
VIKYLWDDVFKFDRNIIFDTIKFNTLEAVVKNFTKEKGRTQFDIFSDDVKELLFNA"
misc_feature 187483..188826
/locus_tag="HPKB_0186"
/note="GTPase subunit of restriction endonuclease [Defense
mechanisms]; Region: McrB; COG1401"
/db_xref="CDD:31591"
misc_feature 187936..188439
/locus_tag="HPKB_0186"
/note="AAA domain (dynein-related subfamily); Region:
AAA_5; pfam07728"
/db_xref="CDD:203741"
misc_feature 187951..187974
/locus_tag="HPKB_0186"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(187954..187977,188185..188187)
/locus_tag="HPKB_0186"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 188173..188190
/locus_tag="HPKB_0186"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene 188822..190036
/locus_tag="HPKB_0187"
/db_xref="GeneID:12340601"
CDS 188822..190036
/locus_tag="HPKB_0187"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761722.1"
/db_xref="GI:384887211"
/db_xref="GeneID:12340601"
/translation="MLNLKERCFRDNELNDNFVGIRSINNDLQICFPLGFDMSDDKNI
RSDVKKLISVLLEYNKAIACENFLNNKNEIIRSNFPLTAYKNVIEYFLSHGYYAENKS
YYENSTKGKINFSKTMKKNRPIIQNLNNKNSFIYTRFQVKKEMINENELITAINKYCV
HEAFSKFGFVFSSFVPPKFKLPADKNYCIYLLENRLNNTFNDDKKILFQSMKNILLQD
DNILEKTDFKFGTYNFYVVWERMIDRAFGIKNKEVYFPKTKWNLRRSNQNPDYLLQPD
SIMLFGDKIYILDAKYYKYGISGVASDLPSSASIIKQIVYGEYATKLETQKEIYNVFL
MPFNSSNNPLKLSNIFENIGFANGEWRDNLKPYENIQGILIDTKFLMQNYNKKSNNLL
KLLAKNVEETKR"
misc_feature 188873..189955
/locus_tag="HPKB_0187"
/note="LlaJI restriction endonuclease; Region: RE_LlaJI;
pfam09563"
/db_xref="CDD:150286"
gene complement(190114..191136)
/locus_tag="HPKB_0188"
/db_xref="GeneID:12340602"
CDS complement(190114..191136)
/locus_tag="HPKB_0188"
/note="Consensus COG by CONSORF: COG2089"
/codon_start=1
/transl_table=11
/product="sialic acid synthase"
/protein_id="YP_005761723.1"
/db_xref="GI:384887212"
/db_xref="GeneID:12340602"
/translation="MLQRPKIVAELSANHNQDLNLAKESLHAIKESGADFVKLQTYTP
SCMTLNSKEDPFIIQGTLWDKENLYELYQKASTPLEWHAELFELAKKLDLGIFSSPFS
SKALELLESLNCPMYKIASFEIVDLDLIEKAARTKKPIILSSGIATSIELQDAISLCK
EAGNFDITLLKCVSAYPSKIEDANLLSMVKLGETFGVKFGLSDHTIGSLCPILATTLG
ASMIEKHFILNKSLQTPDSAFSMDFNEFKSMIEAIKQSVLALGEEEPKINPKTLEKRR
FFMRSLFVIKDIQKGETLTENNIKALRPNLGLHPKFYKEILGQKASKFLKANTPLSAD
GIERSL"
misc_feature complement(190144..191127)
/locus_tag="HPKB_0188"
/note="pseudaminic acid synthase; Region: PseI; TIGR03586"
/db_xref="CDD:163337"
misc_feature complement(190351..191058)
/locus_tag="HPKB_0188"
/note="NeuB family; Region: NeuB; pfam03102"
/db_xref="CDD:202535"
misc_feature complement(190129..190299)
/locus_tag="HPKB_0188"
/note="C-terminal SAF domain of sialic acid synthetase;
Region: SAF_NeuB_like; cd11615"
/db_xref="CDD:212160"
misc_feature complement(order(190204..190212,190228..190236,
190282..190284,190297..190299))
/locus_tag="HPKB_0188"
/note="NeuB binding interface [polypeptide binding]; other
site"
/db_xref="CDD:212160"
misc_feature complement(190228..190230)
/locus_tag="HPKB_0188"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:212160"
gene complement(191140..191781)
/locus_tag="HPKB_0189"
/db_xref="GeneID:12340603"
CDS complement(191140..191781)
/locus_tag="HPKB_0189"
/note="Consensus COG by CONSORF: COG1136"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_005761724.1"
/db_xref="GI:384887213"
/db_xref="GeneID:12340603"
/translation="MIKAINISHAFEKPLYNGVNLCIKPQESLAILGVSGSGKSTLLS
HLATMLKPDSGTISLLEHQDIYALNSKKLLELRRLKVGIVFQSHYLFKGFSALENLQV
ASILAKQEIDHSLLEQLGIAHTLKQGVGELSGGQQQRLSIARVLSKKPKIIIADEPTG
NLDTTSANQVISMLQNYITEKEGALVLATHDEHLAFTCSQVYRLEKEVLIKEK"
misc_feature complement(191167..191781)
/locus_tag="HPKB_0189"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:31331"
misc_feature complement(191167..191778)
/locus_tag="HPKB_0189"
/note="This family is comprised of MJ0796 ATP-binding
cassette, macrolide-specific ABC-type efflux carrier
(MacAB), and proteins involved in cell division (FtsE),
and release of liporoteins from the cytoplasmic membrane
(LolCDE). They are clustered together...; Region:
ABC_MJ0796_Lo1CDE_FtsE; cd03255"
/db_xref="CDD:73014"
misc_feature complement(191662..191685)
/locus_tag="HPKB_0189"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73014"
misc_feature complement(order(191212..191214,191311..191316,
191524..191526,191659..191667,191671..191676))
/locus_tag="HPKB_0189"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73014"
misc_feature complement(191524..191535)
/locus_tag="HPKB_0189"
/note="Q-loop/lid; other site"
/db_xref="CDD:73014"
misc_feature complement(191359..191388)
/locus_tag="HPKB_0189"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73014"
misc_feature complement(191311..191328)
/locus_tag="HPKB_0189"
/note="Walker B; other site"
/db_xref="CDD:73014"
misc_feature complement(191293..191304)
/locus_tag="HPKB_0189"
/note="D-loop; other site"
/db_xref="CDD:73014"
misc_feature complement(191206..191226)
/locus_tag="HPKB_0189"
/note="H-loop/switch region; other site"
/db_xref="CDD:73014"
gene complement(191781..193055)
/locus_tag="HPKB_0190"
/db_xref="GeneID:12340604"
CDS complement(191781..193055)
/locus_tag="HPKB_0190"
/note="Consensus COG by CONSORF: COG0815"
/codon_start=1
/transl_table=11
/product="apolipoprotein N-acyltransferase"
/protein_id="YP_005761725.1"
/db_xref="GI:384887214"
/db_xref="GeneID:12340604"
/translation="MRLILFNQNAFLLACAFVSSVYVNAVLDAYAVENPYISITLTSL
LAPLSMLAFLKTPRNSAFALGFFVGALLFYWCALSFRYSDFTYLLPLIIVLIALVYGV
LFYLLLYFENPYFRLLSFLGSSFIHPFGFDWLVPDSFFSYSVFRVDKLSLGLVFLACI
FLSAKPFKKYRIIAVLLLLGALDFNGFKASDLKKVGNIELISTKTPQDLKFDSNYLNN
IENNILKEIKLAQNKQKTLIVFPETAYPIALENSPFKAKLEDLSDNIAILIGTLRTQG
YNLYNSSFLFSKEGVQIADKVVLAPFGETMPLPEFLQKPLEKLFFGESAYLYRNASNF
SDFTLDDFTFRPLICYEGTSKTAYSNSPSKIFIVMSNNAWFSPSIEPTLQKTLLKYYA
RRYDKIILHSANFSTSYILNPSLLGDILFRKR"
misc_feature complement(191796..193055)
/locus_tag="HPKB_0190"
/note="apolipoprotein N-acyltransferase; Reviewed; Region:
PRK12291"
/db_xref="CDD:183409"
misc_feature complement(<191913..192470)
/locus_tag="HPKB_0190"
/note="Nitrilase superfamily, including nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes;
Region: nitrilase; cl11424"
/db_xref="CDD:212622"
misc_feature complement(order(191943..191945,192006..192011,
192144..192146,192156..192158,192168..192170,
192330..192332))
/locus_tag="HPKB_0190"
/note="active site"
/db_xref="CDD:143587"
misc_feature complement(order(192009..192011,192168..192170,
192330..192332))
/locus_tag="HPKB_0190"
/note="catalytic triad [active]"
/db_xref="CDD:143587"
gene 193285..193986
/locus_tag="HPKB_0191"
/db_xref="GeneID:12340605"
CDS 193285..193986
/locus_tag="HPKB_0191"
/note="Candidate starts by CONSORF: 193279,193285"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761726.1"
/db_xref="GI:384887215"
/db_xref="GeneID:12340605"
/translation="MNYIDLALLVVVVAFGIRGFYHGFVSEVAGTLGIVLGVYLASRY
SVAVGHLFSQHLYDLKNETMMNLVGFLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDR
ALGFIFSCLKTFLVLSFILYALSKMEVMKDANAYLQGKSAFFPTMKSVASKIMRLDGV
KHVEQNLKDNLEEMSDEVKNKESLNKTKESLDKAMDKGVEALKEKTKDLPKNMRDPKA
NHTPPNHTPSNKEPL"
misc_feature 193285..193893
/locus_tag="HPKB_0191"
/note="Uncharacterized membrane protein, required for
colicin V production [General function prediction only];
Region: CvpA; COG1286"
/db_xref="CDD:31477"
misc_feature 193294..193737
/locus_tag="HPKB_0191"
/note="Colicin V production protein; Region: Colicin_V;
pfam02674"
/db_xref="CDD:202343"
gene 193996..195501
/gene="lysS"
/locus_tag="HPKB_0192"
/db_xref="GeneID:12340606"
CDS 193996..195501
/gene="lysS"
/locus_tag="HPKB_0192"
/note="Consensus COG by CONSORF: COG1190"
/codon_start=1
/transl_table=11
/product="lysyl-tRNA synthetase"
/protein_id="YP_005761727.1"
/db_xref="GI:384887216"
/db_xref="GeneID:12340606"
/translation="MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAY
VKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKIEDESAILQAYVSQNELNDEFKSLK
KHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY
LDLIVNPSVKDVFKKRSLIVSSVRKFFETEGFLEVETPMMHPIPGGANARPFITYHNA
LEIERYLRIAPELYLKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTY
EDLIELSKRLFDYLLKTLNLPSKIIYNDMEVDFNQTSVISYLDALETIGGISKDILEK
EDRLLAYLLEQGIKVEPNLTYGKLLAEAFDHFAEHQLINPTFVTQYPIEISPLARRND
SNPNIADRFELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVW
ALAHGMPPTAGQGIGIDRLVMLLTGAKSIKDVILFPAMRPVKNDFNVESEE"
misc_feature 194005..195465
/gene="lysS"
/locus_tag="HPKB_0192"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysS;
PRK00484"
/db_xref="CDD:179044"
misc_feature 194170..194484
/gene="lysS"
/locus_tag="HPKB_0192"
/note="LysRS_N: N-terminal, anticodon recognition domain
of lysyl-tRNA synthetases (LysRS). These enzymes are
homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs).
This domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop; Region: LysRS_N;
cd04322"
/db_xref="CDD:58592"
misc_feature order(194179..194184,194233..194238,194323..194325,
194401..194403,194410..194418)
/gene="lysS"
/locus_tag="HPKB_0192"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58592"
misc_feature order(194191..194193,194197..194202,194218..194220,
194251..194253,194257..194259,194311..194313,
194353..194355,194371..194373)
/gene="lysS"
/locus_tag="HPKB_0192"
/note="putative anticodon binding site; other site"
/db_xref="CDD:58592"
misc_feature 194491..195465
/gene="lysS"
/locus_tag="HPKB_0192"
/note="Lys_tRNA synthetase (LysRS) class II core domain.
Class II LysRS is a dimer which attaches a lysine to the
3' OH group of ribose of the appropriate tRNA. Its
assignment to class II aaRS is based upon its structure
and the presence of three...; Region: LysRS_core; cd00775"
/db_xref="CDD:29820"
misc_feature 194587..194601
/gene="lysS"
/locus_tag="HPKB_0192"
/note="motif 1; other site"
/db_xref="CDD:29820"
misc_feature order(194683..194685,194749..194751,194755..194757,
194773..194775,194785..194787,195199..195201,
195220..195222,195229..195231,195241..195243,
195397..195399)
/gene="lysS"
/locus_tag="HPKB_0192"
/note="active site"
/db_xref="CDD:29820"
misc_feature 194746..194757
/gene="lysS"
/locus_tag="HPKB_0192"
/note="motif 2; other site"
/db_xref="CDD:29820"
misc_feature 195388..195399
/gene="lysS"
/locus_tag="HPKB_0192"
/note="motif 3; other site"
/db_xref="CDD:29820"
gene 195501..196751
/gene="glyA"
/locus_tag="HPKB_0193"
/db_xref="GeneID:12340607"
CDS 195501..196751
/gene="glyA"
/locus_tag="HPKB_0193"
/note="Consensus COG by CONSORF: COG0112"
/codon_start=1
/transl_table=11
/product="serine hydroxymethyltransferase"
/protein_id="YP_005761728.1"
/db_xref="GI:384887217"
/db_xref="GeneID:12340607"
/translation="MAYFLEQTDSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAM
GSVLTNKYAEGYPNKRYYGGCEVVDKIESLAIERAKKLFNCQFANVQAHSGSQANNAV
YHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHYQSFSYGVNLDGYIDYEEALKIAQ
SVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTNEHAHPFPHCH
VVSSTTHKTLRGPRGGLILTNDEEIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLK
PEFKAYAQLVKSNMQVLAKALQEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGN
AGITVNKNTIPGETRSPFVTSGIRIGSAALSARGMGAREFEIIGNKISDILNDINNVS
LQLHVKEELKAMANQFPVYQQPIF"
misc_feature 195501..196733
/gene="glyA"
/locus_tag="HPKB_0193"
/note="serine hydroxymethyltransferase; Reviewed; Region:
PRK13034"
/db_xref="CDD:183853"
misc_feature 195516..196712
/gene="glyA"
/locus_tag="HPKB_0193"
/note="Serine-glycine hydroxymethyltransferase (SHMT).
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl...; Region: SHMT;
cd00378"
/db_xref="CDD:99733"
misc_feature order(195525..195527,195531..195533,195552..195557,
195582..195584,195597..195599,195651..195653,
195705..195710,195732..195734,195777..195779,
195798..195800,195903..195908,196278..196280,
196332..196334)
/gene="glyA"
/locus_tag="HPKB_0193"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99733"
misc_feature order(195594..195596,195654..195656,195684..195686,
195783..195788,195867..195869,196014..196016,
196089..196091,196098..196100,196173..196178,
196194..196196,196572..196574)
/gene="glyA"
/locus_tag="HPKB_0193"
/note="glycine-pyridoxal phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99733"
misc_feature order(195594..195596,195867..195869,196176..196178,
196572..196574)
/gene="glyA"
/locus_tag="HPKB_0193"
/note="active site"
/db_xref="CDD:99733"
misc_feature order(195660..195662,195681..195683,195852..195854,
195864..195866,195870..195872,196254..196256,
196524..196526)
/gene="glyA"
/locus_tag="HPKB_0193"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:99733"
gene 196762..197304
/locus_tag="HPKB_0194"
/db_xref="GeneID:12340608"
CDS 196762..197304
/locus_tag="HPKB_0194"
/note="Consensus COG by CONSORF: COG1473"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761729.1"
/db_xref="GI:384887218"
/db_xref="GeneID:12340608"
/translation="MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAM
LTSSLIQKHLKKEIEIAHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNF
TAYNTKTPGHLHLYVHKGHTELGEGERLVKTLSMKLAQGLPKEWRVFPSNEWPKEFNI
LALPYEVFAKERGSSWAKHL"
misc_feature 196765..196980
/locus_tag="HPKB_0194"
/note="Domain of unknown function (DUF1882); Region:
DUF1882; pfam08966"
/db_xref="CDD:149893"
misc_feature <197020..197289
/locus_tag="HPKB_0194"
/note="AE_Prim_S_like: primase domain similar to that
found in the small subunit of archaeal and eukaryotic
(A/E) DNA primases. The replication machineries of A/Es
are distinct from that of bacteria. Primases are
DNA-dependent RNA polymerases which synthesis...; Region:
AE_Prim_S_like; cl01287"
/db_xref="CDD:242415"
gene 197326..198135
/locus_tag="HPKB_0195"
/db_xref="GeneID:12340609"
CDS 197326..198135
/locus_tag="HPKB_0195"
/note="Candidate starts by CONSORF: 197311,197323,197326"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761730.1"
/db_xref="GI:384887219"
/db_xref="GeneID:12340609"
/translation="MSEKERLNEVILEEENNGGGTKKVFLIVAIAIIILAVLLMVFWK
STRVAPKETFLQTDSGMQKIGNTKDEKKDDAFESLNLDPSKQESDLDKVADNVKKQEN
DAFKMPIQTNQTQTEMKTTEETQEAKKELKAVEHTPMSAQKESQAVAKKETPHKKPKV
TPKDKEAHKDKVKHAAKELKAKKEAHKEVPKKANSKTNLTKGHYLQVGVFAHTPNKAF
LQAFNQFPHKIEDRGATKRYLIGPYKSKQEALMHADEVSKKMTKPVVIEAR"
gene complement(198507..199970)
/locus_tag="HPKB_0196"
/db_xref="GeneID:12340610"
CDS complement(198507..199970)
/locus_tag="HPKB_0196"
/note="Consensus COG by CONSORF: COG1479"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761731.1"
/db_xref="GI:384887220"
/db_xref="GeneID:12340610"
/translation="MLLHVLASKQNEKDKQETRKYLYQKGELKLEVAPQNQSFFKALL
EAAEKGNISHCEKDADTEGKQNLFEVLKVILDKVSKLNKEEVNERFEALLEMVLMRLE
EPDPGRAIRTFQSVNDRGTPLLLLDKLKSLLIYYSNTFCDGKRGLDQFINDHFGEIFK
IFAKIKKNNHISSVGGPNFDEGDIFRYHAGSQKFDGIDFLGHYRASTEDTYEQLKDKL
KEVRKGKLKSFIQSYVSDLKSFYQAFLDLLNEIDTNPTTFKVMLINTINPRFFNSLIR
LKINDELDDETLKLFAKTDIVFFKAGKTMQAMAYNLIEEYLEKGKEGLKSKMIAQCRN
YIDLASRELVRNISNSKYFHYIFFEKNCQEMGLDALKKLIRGKQFSQEKEHIIPIILL
EQRLYNKIRDLGFEGKKDLEDYIDTYSNFISLEKSLNLKASDKDLYGKDEIYKNSGIP
FNRRFNVKGFNKKALIARNDEMREWLINTFFKDFATQ"
misc_feature complement(198546..198956)
/locus_tag="HPKB_0196"
/note="Protein of unknown function (DUF1524); Region:
DUF1524; pfam07510"
/db_xref="CDD:203659"
gene 200365..200898
/locus_tag="HPKB_0197"
/db_xref="GeneID:12340611"
CDS 200365..200898
/locus_tag="HPKB_0197"
/note="Consensus COG by CONSORF: COG2862. Candidate starts
by CONSORF: 200359,200365"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761732.1"
/db_xref="GI:384887221"
/db_xref="GeneID:12340611"
/translation="MLEKLIERVLFATRWLLAPLCIAMSLVLVVLGYVFMKELWHMLS
HLDTISETDLVLSALGLVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDF
NALKLKVSLSIVAISAIFLLKRYMSLEDVLSSIPKDAPLSHNPIFWQVVIHLVFVCSA
LLAAVTNNIAFSQNKGH"
misc_feature 200368..200895
/locus_tag="HPKB_0197"
/note="Uncharacterized protein family, UPF0114; Region:
UPF0114; cl01078"
/db_xref="CDD:242290"
gene complement(200904..202412)
/locus_tag="HPKB_0198"
/db_xref="GeneID:12340612"
CDS complement(200904..202412)
/locus_tag="HPKB_0198"
/note="Consensus COG by CONSORF: COG1502"
/codon_start=1
/transl_table=11
/product="phopholipase D-family protein"
/protein_id="YP_005761733.1"
/db_xref="GI:384887222"
/db_xref="GeneID:12340612"
/translation="MKILLVLLSVFFFNGCFGLVYKTPISSPPISYDPYTTTIGSLYA
KNLKENPNHSAAILLEDGFDALLHRVGLIRMSQKSIDMQTYIYKNDLSSQVIAKELLN
AANRGVKVRILLDDNGLDSDFSDIMLLNFHKNIEVKIFNPYYIRNKGLRYFEMLADYE
RIKKRMHNKLFIVDNFAVIIGGRNIGDNYFDNDLDTNFLDLDALFFGGVASKAKESFE
RYWRFHRSIPVSLLRTHKRLKNNAKEIAKLHEKIPISTEDKNQFEKKVNDFIERFQKY
QYPIYYGNAIFLADSPKKIDTPLYSPIKIAFEKALKNAKDSVFIASSYFIPGKKMMKI
FKNQISKGIELNILTNSLSSTDAIVVYGAWERYRNQLVRMGANVYEIRNDFFNRQIKG
RFSTKHSLHGKTIVFDDNLTLLGSFNIDPRSAYINTESAVLFDNPSFAKRVRLSLKDH
AQQAWHLVVYRHRVIWEAVEEGILIHEKTSPDASFFLRLIKEWSKVLPEREL"
misc_feature complement(201750..202238)
/locus_tag="HPKB_0198"
/note="Putative catalytic domain, repeat 1, of Escherichia
coli uncharacterized protein ymdC and similar proteins;
Region: PLDc_ymdC_like_1; cd09111"
/db_xref="CDD:197210"
misc_feature complement(order(201813..201815,201861..201863,
201867..201869,201906..201908,201912..201914))
/locus_tag="HPKB_0198"
/note="putative active site [active]"
/db_xref="CDD:197210"
misc_feature complement(201912..201914)
/locus_tag="HPKB_0198"
/note="catalytic site [active]"
/db_xref="CDD:197210"
misc_feature complement(200919..201551)
/locus_tag="HPKB_0198"
/note="Putative catalytic domain, repeat 2, of Escherichia
coli uncharacterized protein ymdC and similar proteins;
Region: PLDc_ymdC_like_2; cd09113"
/db_xref="CDD:197212"
misc_feature complement(201081..201494)
/locus_tag="HPKB_0198"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:205272"
misc_feature complement(order(201126..201128,201159..201161,
201165..201167,201204..201206,201210..201212))
/locus_tag="HPKB_0198"
/note="putative active site [active]"
/db_xref="CDD:197212"
misc_feature complement(201210..201212)
/locus_tag="HPKB_0198"
/note="catalytic site [active]"
/db_xref="CDD:197212"
gene complement(202433..203170)
/gene="sdhB"
/locus_tag="HPKB_0199"
/db_xref="GeneID:12340613"
CDS complement(202433..203170)
/gene="sdhB"
/locus_tag="HPKB_0199"
/note="Consensus COG by CONSORF: COG0479"
/codon_start=1
/transl_table=11
/product="fumarate reductase iron-sulfur subunit"
/protein_id="YP_005761734.1"
/db_xref="GI:384887223"
/db_xref="GeneID:12340613"
/translation="MSDNERTIVIRVLKFDPQSAVSKPHFKEYQLKETPSMTLFIALN
LIREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFESGVITLMPMPSFTL
IKDLSVNTGDWFGDMTKRVESWAHSKEEVDITKPEKRIEPDEAQEVFELDRCIECGCC
IASCGTKLMRPNFIGAAGMNRAMRFMIDSHDERSDDDFYELVGDDDGVFGCMSLIACH
DTCPKELPLQSSIATLRNRMLKVGKSR"
misc_feature complement(202445..203161)
/gene="sdhB"
/locus_tag="HPKB_0199"
/note="fumarate reductase iron-sulfur subunit;
Provisional; Region: frdB; PRK13552"
/db_xref="CDD:184136"
misc_feature complement(202829..203143)
/gene="sdhB"
/locus_tag="HPKB_0199"
/note="2Fe-2S iron-sulfur cluster binding domain; Region:
Fer2_3; pfam13085"
/db_xref="CDD:221911"
misc_feature complement(<202478..>202756)
/gene="sdhB"
/locus_tag="HPKB_0199"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:246686"
gene complement(203163..205307)
/locus_tag="HPKB_0200"
/db_xref="GeneID:12340614"
CDS complement(203163..205307)
/locus_tag="HPKB_0200"
/note="Consensus COG by CONSORF: COG1053"
/codon_start=1
/transl_table=11
/product="fumarate reductase flavoprotein subunit"
/protein_id="YP_005761735.1"
/db_xref="GI:384887224"
/db_xref="GeneID:12340614"
/translation="MKITYCDALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHS
AAAQGGMQASLANAKKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELAS
WGVPWTRIKKGDRPAVVNGEHVIITERDDRHGYILSRDFGGTKKWRTCFTADATGHTM
LYAVANEALHHKVDIQDRKDMLAFIHHDNKCYGAVVRDLITGEISAYVSKGTLLATGG
YGRVYKHTTNAVICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDG
GVLRDKFGRRFMPAYEPEKKELASRNVVSRRILEHIQKGYGVKSPYGNHVWLDIAILG
RNHVEKNLRDVRDIAMTFAGIDPADSEEQTKDNMQGAPANEPEYGQAMAKQKGWIPIK
PMQHYSMGGVRTNPKGETHLKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDY
FASHCLEAQIEINTQKVEAFIKESQDYMHFLLHNEGKEDVYEIRERMKEVMDEKVGVF
REGKRLEEALKELQELYARSKNICVKNKVLHNNPELEDAYRTKKMLKLALCITQGALL
RTESRGAHTRIDYPKRDDEKWLNRTLASWPSAEQDMPTIEYEELDVMKMEISPDFRGY
GKKGNFIPHPKKEERDAEILKTILELEKLGKDRVEVQHALMPFELQEKYKARNMRLED
EEVRARGEHLYSFNVHDLLDKHNANLKGEYHE"
misc_feature complement(203256..205307)
/locus_tag="HPKB_0200"
/note="fumarate reductase flavoprotein subunit;
Provisional; Region: PRK08626"
/db_xref="CDD:181507"
misc_feature complement(203793..205229)
/locus_tag="HPKB_0200"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(203436..203828)
/locus_tag="HPKB_0200"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene complement(205317..206084)
/locus_tag="HPKB_0201"
/db_xref="GeneID:12340615"
CDS complement(205317..206084)
/locus_tag="HPKB_0201"
/note="Consensus COG by CONSORF: COG2009. Candidate starts
by CONSORF: 206183,206084"
/codon_start=1
/transl_table=11
/product="fumarate reductase cytochrome b-556 subunit"
/protein_id="YP_005761736.1"
/db_xref="GI:384887225"
/db_xref="GeneID:12340615"
/translation="MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAH
MFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVSVVAAGVILILVVHAFLALRKFP
INYRQYKVFKTHKHLMKHGDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSS
YRFVTQNFWLLYIFLLFAVELHGSIGLYRLAIKWGWFKNVSIQGLRKVKWAMSVFFIV
LGLCTYGAYIKKGLENKDNGIKTMQEAIEADGKFHKE"
misc_feature complement(205392..206009)
/locus_tag="HPKB_0201"
/note="Quinol:fumarate reductase (QFR) Type B subfamily,
transmembrane subunit; QFR couples the reduction of
fumarate to succinate to the oxidation of quinol to
quinone, the opposite reaction to that catalyzed by the
related protein, succinate:quinone...; Region:
QFR_TypeB_TM; cd00581"
/db_xref="CDD:73218"
misc_feature complement(order(205479..205481,205503..205508,
205518..205520,205707..205709,205731..205736,
205743..205745,205785..205787,206004..206006))
/locus_tag="HPKB_0201"
/note="Iron-sulfur protein interface; other site"
/db_xref="CDD:73218"
misc_feature complement(order(205506..205508,205515..205517,
205527..205529,205539..205541,205686..205688,
205707..205709,205794..205796,205803..205808,
205974..205976,205983..205985,205992..205997))
/locus_tag="HPKB_0201"
/note="proximal heme binding site [chemical binding];
other site"
/db_xref="CDD:73218"
misc_feature complement(order(205413..205415,205425..205427,
205569..205571,205599..205601,205608..205610,
205644..205646,205656..205658,205953..205955,
205965..205967))
/locus_tag="HPKB_0201"
/note="distal heme binding site [chemical binding]; other
site"
/db_xref="CDD:73218"
misc_feature complement(order(205572..205574,205584..205589,
205638..205640,205650..205652,205659..205664,
205671..205676,205734..205736,205746..205748,
205758..205760,205788..205793))
/locus_tag="HPKB_0201"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73218"
gene 206298..207002
/gene="tpiA"
/locus_tag="HPKB_0202"
/db_xref="GeneID:12340616"
CDS 206298..207002
/gene="tpiA"
/locus_tag="HPKB_0202"
/note="Consensus COG by CONSORF: COG0149"
/codon_start=1
/transl_table=11
/product="triosephosphate isomerase"
/protein_id="YP_005761737.1"
/db_xref="GI:384887226"
/db_xref="GeneID:12340616"
/translation="MTKIAMANFKSAMPIYKSHAYLEELEKTLKPQHFDRVFVFPDFL
GLLPNSFLHFTLGAQNAYPRDCGAFTGEITSQHLEELKINTLLIGHSERRMLLKESPS
FLKEKFDFFKSKNFKIVYCIGEALTTREKGFKAVKEFLHEQSENIDLNYPNLVVAYEP
IWAIGTKKSASLEDIYLTHGFLKQVLNQKTPLLYGGSVNAQNAKEILGIDSVDGLLIG
SASLELENFKTIISFL"
misc_feature 206298..206993
/gene="tpiA"
/locus_tag="HPKB_0202"
/note="triosephosphate isomerase; Provisional; Region:
PRK14567"
/db_xref="CDD:173031"
misc_feature 206304..206993
/gene="tpiA"
/locus_tag="HPKB_0202"
/note="Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually...; Region: TIM; cd00311"
/db_xref="CDD:73362"
misc_feature order(206319..206321,206325..206327,206565..206567,
206772..206774,206790..206792,206886..206888,
206943..206945,206949..206954)
/gene="tpiA"
/locus_tag="HPKB_0202"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73362"
misc_feature order(206319..206321,206328..206330,206424..206432,
206436..206438,206445..206447,206472..206474,
206526..206528,206535..206540,206571..206576)
/gene="tpiA"
/locus_tag="HPKB_0202"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73362"
misc_feature order(206325..206327,206565..206567,206772..206774)
/gene="tpiA"
/locus_tag="HPKB_0202"
/note="catalytic triad [active]"
/db_xref="CDD:73362"
gene 207012..207839
/locus_tag="HPKB_0203"
/db_xref="GeneID:12340617"
CDS 207012..207839
/locus_tag="HPKB_0203"
/note="Consensus COG by CONSORF: COG0623"
/codon_start=1
/transl_table=11
/product="enoyl-ACP reductase"
/protein_id="YP_005761738.1"
/db_xref="GI:384887227"
/db_xref="GeneID:12340617"
/translation="MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL
EKRVRPIAQELNSPYVYELDVSKEEHFKPLYDSVKKDLGSLDFIVHSVAFAPKEALEG
SLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGL
AKAALESAVRYLAVDLGKHNIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKN
VSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGMGAVEEKDNKATLSWDLHKEQ"
misc_feature 207015..207833
/locus_tag="HPKB_0203"
/note="enoyl-(acyl carrier protein) reductase;
Provisional; Region: PRK08415"
/db_xref="CDD:181416"
misc_feature 207027..207773
/locus_tag="HPKB_0203"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature order(207048..207056,207066..207071,207129..207131,
207198..207206,207282..207293,207363..207365,
207438..207446,207474..207476,207495..207497,
207573..207584,207588..207599)
/locus_tag="HPKB_0203"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature order(207099..207101,207204..207215,207222..207224,
207318..207338,207345..207350,207357..207362,
207369..207374,207381..207383,207393..207395,
207402..207404,207450..207455,207459..207470,
207474..207479,207486..207491,207498..207503,
207510..207515,207519..207536,207540..207545,
207624..207626,207633..207635,207651..207662,
207678..207680,207687..207692,207699..207701,
207714..207716,207720..207758,207762..207773)
/locus_tag="HPKB_0203"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(207204..207215,207318..207338,207345..207350,
207357..207362,207369..207374,207381..207383,
207390..207395,207402..207404,207450..207455,
207459..207467,207474..207479,207486..207491,
207498..207503,207510..207515,207519..207527,
207531..207539)
/locus_tag="HPKB_0203"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(207288..207290,207294..207296,207444..207446,
207474..207476,207483..207485,207495..207497,
207594..207599,207606..207608,207615..207617)
/locus_tag="HPKB_0203"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(207366..207368,207444..207446,207483..207485,
207495..207497)
/locus_tag="HPKB_0203"
/note="active site"
/db_xref="CDD:187630"
gene 207849..208859
/gene="lpxD"
/locus_tag="HPKB_0204"
/db_xref="GeneID:12340618"
CDS 207849..208859
/gene="lpxD"
/locus_tag="HPKB_0204"
/note="Consensus COG by CONSORF: COG1044. Candidate starts
by CONSORF: 207846,207849"
/codon_start=1
/transl_table=11
/product="UDP-3-O-(3-hydroxymyristoyl) glucosamine
N-acyltransferase"
/protein_id="YP_005761739.1"
/db_xref="GI:384887228"
/db_xref="GeneID:12340618"
/translation="MKLSELLSAYSIETEFSNDFEVHALAKLDKATPNDISYIDQTRY
LKLLKDSQAGAVFIRKKESSKVPKHMQALVVDNPHLAFAKASHAFKIPFFKNPESVNE
PKHFEKVTIMPNVVIGEGVEIGENSLIYPGVVIADGVKIGKNCVLYPRVILYQNTILE
DNVTIHAGSVIGGDGFGYAHTALGEHVKIEHVGIVRIQKNVEIGANTAIDRAVFGETL
IKEGVKIDNLVQIGHNCVLGEHSIVVSQVGLSGSTTTGRNVVFGGQVGIGGHLHVGEF
TQIGGKSAVGKDLPPNTNFAGAIPAMEIHEWHHFLAHLRTNFRKQQKTSLLQKAKGFF
KS"
misc_feature 207861..208820
/gene="lpxD"
/locus_tag="HPKB_0204"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Region: lipid_A_lpxD; TIGR01853"
/db_xref="CDD:162561"
misc_feature 207900..208115
/gene="lpxD"
/locus_tag="HPKB_0204"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:203056"
misc_feature 208167..208772
/gene="lpxD"
/locus_tag="HPKB_0204"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature order(208188..208190,208200..208205,208257..208259,
208296..208298,208302..208304,208308..208310,
208344..208346,208350..208352,208368..208370,
208374..208376,208410..208418,208452..208454,
208464..208466,208470..208472,208476..208478,
208485..208493,208518..208520,208524..208532,
208536..208538,208548..208550,208566..208568,
208572..208574,208584..208592,208620..208622,
208638..208646,208656..208658,208692..208700,
208752..208754,208764..208766)
/gene="lpxD"
/locus_tag="HPKB_0204"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature order(208374..208382,208524..208526,208536..208538,
208545..208550,208578..208583,208596..208604,
208653..208658,208689..208691)
/gene="lpxD"
/locus_tag="HPKB_0204"
/note="active site"
/db_xref="CDD:100043"
misc_feature order(208374..208382,208545..208550,208599..208604,
208653..208658)
/gene="lpxD"
/locus_tag="HPKB_0204"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature order(208524..208526,208536..208538,208578..208583,
208596..208598,208689..208691)
/gene="lpxD"
/locus_tag="HPKB_0204"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene 208924..210081
/locus_tag="HPKB_0205"
/db_xref="GeneID:12340619"
CDS 208924..210081
/locus_tag="HPKB_0205"
/note="Consensus COG by CONSORF: COG0192"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine synthetase"
/protein_id="YP_005761740.1"
/db_xref="GI:384887229"
/db_xref="GeneID:12340619"
/translation="MKDSFLFTSESVTEGHPDKMADQISDAVLDYIIERDQKAKVACE
TLVSNGFCMITGELKTSVYAPMQEIAREVVKKIGYTDALYGFDYRSAAVLNGVGEQSP
DINQGVDREDGEIGAGDQGLMFGYACKETETLMPLPIHLAHQLTFALAQKRKDNTLPF
LRPDGKSQVSVRYENNKPVSIDTIVISTQHSPEVSQKHLKEAVIEEIVYKVLPKEYLH
DNIKFFVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAA
YAARYVAKNLVASGVCDKATVQLAYAIGVIEPVSVYVNTHNTSKYSSAELEKCVKSVF
KLTPKGIIESLDLLRPIYSLTSAYGHFGRELEEFTWEKTNKAEEIQAFFKR"
misc_feature 208933..210075
/locus_tag="HPKB_0205"
/note="S-adenosylmethionine synthetase; Validated; Region:
PRK05250"
/db_xref="CDD:179974"
misc_feature 208933..209229
/locus_tag="HPKB_0205"
/note="S-adenosylmethionine synthetase, N-terminal domain;
Region: S-AdoMet_synt_N; pfam00438"
/db_xref="CDD:201226"
misc_feature 209260..209616
/locus_tag="HPKB_0205"
/note="S-adenosylmethionine synthetase, central domain;
Region: S-AdoMet_synt_M; pfam02772"
/db_xref="CDD:202384"
misc_feature 209620..210039
/locus_tag="HPKB_0205"
/note="S-adenosylmethionine synthetase, C-terminal domain;
Region: S-AdoMet_synt_C; pfam02773"
/db_xref="CDD:111646"
gene 210148..210561
/locus_tag="HPKB_0206"
/db_xref="GeneID:12340620"
CDS 210148..210561
/locus_tag="HPKB_0206"
/note="Consensus COG by CONSORF: COG0105"
/codon_start=1
/transl_table=11
/product="nucleoside diphosphate kinase"
/protein_id="YP_005761741.1"
/db_xref="GI:384887230"
/db_xref="GeneID:12340620"
/translation="MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVK
DAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTI
RADFAESIDANAVHGSDSLENAHNEIAFFFATRDL"
misc_feature 210154..210543
/locus_tag="HPKB_0206"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:239876"
misc_feature order(210175..210177,210295..210297,210319..210321,
210403..210405,210421..210423,210454..210456,
210484..210486,210493..210495,210499..210504,
210526..210528)
/locus_tag="HPKB_0206"
/note="active site"
/db_xref="CDD:239876"
misc_feature order(210187..210189,210202..210210,210217..210219,
210226..210228,210253..210261)
/locus_tag="HPKB_0206"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239876"
gene 210588..210944
/locus_tag="HPKB_0207"
/db_xref="GeneID:12340621"
CDS 210588..210944
/locus_tag="HPKB_0207"
/note="Consensus COG by CONSORF: COG0777"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761742.1"
/db_xref="GI:384887231"
/db_xref="GeneID:12340621"
/translation="MQFEMRKIAFNVPKAFSLEHEGVVLEGEVVRVRAKLFRLKAHLK
GELMLVCDTSGKEFKKSLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEI
LRSEVESIRLDYHYAD"
misc_feature 210702..>210908
/locus_tag="HPKB_0207"
/note="Uncharacterized ACR, COG1399; Region: DUF177;
cl00616"
/db_xref="CDD:207136"
gene 210960..211106
/gene="rpmF"
/locus_tag="HPKB_0208"
/db_xref="GeneID:12340622"
CDS 210960..211106
/gene="rpmF"
/locus_tag="HPKB_0208"
/note="Consensus COG by CONSORF: COG0333"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L32"
/protein_id="YP_005761743.1"
/db_xref="GI:384887232"
/db_xref="GeneID:12340622"
/translation="MAVPDRRVSKTRAAKRRTHYSVKLAKPIKAKDGTWKLPHHINKF
TKEY"
misc_feature 210960..>211088
/gene="rpmF"
/locus_tag="HPKB_0208"
/note="50S ribosomal protein L32; Validated; Region: rpmF;
PRK01110"
/db_xref="CDD:179224"
gene 211181..212201
/locus_tag="HPKB_0209"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340623"
gene 212229..213221
/locus_tag="HPKB_0211"
/db_xref="GeneID:12340624"
CDS 212229..213221
/locus_tag="HPKB_0211"
/note="Consensus COG by CONSORF: COG0332"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP synthase"
/protein_id="YP_005761744.1"
/db_xref="GI:384887233"
/db_xref="GeneID:12340624"
/translation="MEFYASLKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKER
RFANDEEKSSDLGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG
IENKPAFDISAACTGFIYLLSVAKAYVESGMCENVLIVGAEKTSSVLDFKDRGTCILF
GDGAGACVIGRTKRLKESVLDVQISANGNFSNYLYTPRTLKPTPFSAKEEALEPFLCM
KGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQV
VLTVHKYGNTSAASIPMAMCEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFGG"
misc_feature 212235..213212
/locus_tag="HPKB_0211"
/note="3-oxoacyl-(acyl-carrier-protein) synthase III;
Region: fabH; TIGR00747"
/db_xref="CDD:162020"
misc_feature 212238..213206
/locus_tag="HPKB_0211"
/note="Ketoacyl-acyl carrier protein synthase III (KASIII)
initiates the elongation in type II fatty acid synthase
systems. It is found in bacteria and plants. Elongation of
fatty acids in the type II systems occurs by Claisen
condensation of malonyl-acyl...; Region: KAS_III; cd00830"
/db_xref="CDD:29417"
misc_feature order(212475..212477,212481..212483,212511..212513,
212520..212522,212544..212564,212586..212588,
212595..212600,212607..212612,212667..212669,
212778..212795,212811..212816,213180..213182)
/locus_tag="HPKB_0211"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29417"
misc_feature order(212571..212573,212991..212993,213081..213083)
/locus_tag="HPKB_0211"
/note="active site"
/db_xref="CDD:29417"
misc_feature 213000..213002
/locus_tag="HPKB_0211"
/note="CoA binding pocket [chemical binding]; other site"
/db_xref="CDD:29417"
gene 213242..213544
/locus_tag="HPKB_0212"
/db_xref="GeneID:12340625"
CDS 213242..213544
/locus_tag="HPKB_0212"
/note="Candidate starts by CONSORF: 213188,213239,213242"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761745.1"
/db_xref="GI:384887234"
/db_xref="GeneID:12340625"
/translation="MKKMIFLFLVVLGGLKSQSSYCSDFCEGTPDSRIPPMGFHFSFV
HSVKYYLQDPQERDHKLKKCHEVFDSTLKVNFITKSFKKDCKHAQMALEQSQQKAP"
gene complement(213834..214217)
/locus_tag="HPKB_0213"
/db_xref="GeneID:12340626"
CDS complement(213834..214217)
/locus_tag="HPKB_0213"
/note="Candidate starts by CONSORF: 214220,214217"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761746.1"
/db_xref="GI:384887235"
/db_xref="GeneID:12340626"
/translation="MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKLMGKMTNSSL
LSITSMNNEPVVIKNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRL
NCKPNQLLEVKIITDKGEYYHKFSQ"
gene complement(214278..216971)
/locus_tag="HPKB_0214"
/db_xref="GeneID:12340627"
CDS complement(214278..216971)
/locus_tag="HPKB_0214"
/note="Consensus COG by CONSORF: COG1245. Candidate starts
by CONSORF:
216971,216965,216803,216617,216533,216416,216173,216101,
216092,216089,216074,216059,215948,215792,215765,215756,
215702,215624,215579,215522,215408,215396,215375,215153"
/codon_start=1
/transl_table=11
/product="ATP-dependent OLD family endonuclease"
/protein_id="YP_005761747.1"
/db_xref="GI:384887236"
/db_xref="GeneID:12340627"
/translation="MDLKIQTKEIGEGLKELSKTLISYPFEKHVEASEEQCSKIVFIP
INNNDYSNICTFVSNFKNLIDSYNQLKPFLHFYKELIKYVSGNSEWIKTFCQCVKEII
KHNTPNKKCNSDDFFVMGKHKQNQLSKIYSRFKELNGNEIKTKYMEYISKKIKSLDEV
FNTTDFNEKFASRIETLSNEQSQEKLSEFIEDIIKEIDEKYPINENFKQQFKTFRSSI
ISLKKKIKNSLKDLDKTRKDFEQKKESLILEIEDYCKNQKTLEFNYDVLLDNIQQTCK
EYIASHVINNESKDMKYMMCQFYLKQIDLLANSEIEQYRYSDFFESARKSLWENIKTL
DEKSGVHLFPKNIDEIKQKFEANKEKFQQSKNYSEFAEYCRECNPYTAFQGLRNRVNF
PLKNHSLDKFVPNMREYKELKITDNDLKTALLTCLDYSSPSEFDQSDWFFRNSLFRKM
DFHPNTIWNTFGKILNYKNFDQKDLKYKQALEIMFDKNNDLEVYSIEFFNDKSSLLFK
VNFTEILENIAEILEYNMQSRIDSLIAKEFNELLAIAQDDHQDNYQLKIRVRHNNKFF
REKCTAYEIKLEIYDCRKSDNQKPIILSQQSTGFQWAFNFMFGFLYNVGSNFSFNKNI
IYVMDEPAAHLSVPARKEFRKFLKEYAHKHNTTFVLATHDPFLVDTDHLDEIRIVEKK
EEGSAIENTFNYSLKNDANRNSDALDKIKRSLGVSQNVFHNPQKHRIIFVEGITDYCY
LSAFKLYFNEREFKNDPIPFTFLPISGLKANPKDMQKTIKKLCELDNNPIVLIDDDRK
CDFDQNAKSEQFKKANEEMPDPITILQLSSCDENFKQIEDCFSTNDREKYAKNKRMEL
AMAFKTRLLYSEKDDVVGEETKKNFLKLFEWIKERVKQPND"
misc_feature complement(214965..215714)
/locus_tag="HPKB_0214"
/note="AAA domain; Region: AAA_21; pfam13304"
/db_xref="CDD:205484"
misc_feature complement(214932..>215111)
/locus_tag="HPKB_0214"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(215082..215099)
/locus_tag="HPKB_0214"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(215064..215075)
/locus_tag="HPKB_0214"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(214977..214997)
/locus_tag="HPKB_0214"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 217365..218471
/locus_tag="HPKB_0215"
/db_xref="GeneID:12340628"
CDS 217365..218471
/locus_tag="HPKB_0215"
/note="Consensus COG by CONSORF: COG0489. Candidate starts
by CONSORF: 217230,217233,217365"
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
/protein_id="YP_005761748.1"
/db_xref="GI:384887237"
/db_xref="GeneID:12340628"
/translation="MLTQEDVLNALKTIIYPNFEKDIVSFGFVKNIALHDDQLGLLIE
IPSSSEETSEILRENISKAMQELGVKALNLDIKTPRKPQAPKPATKNLAKNIKHVVMI
SSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQNADVIMDPSGKK
LIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDIIWGDLDVLVVDMPPGT
GDAQLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHIPIAGIVENMGSFVCEH
CKKESEIFGSNSMNELLEAYHTQILAKLPLEPKVRLGGDRGEPIVISHPNSVSAKIFE
KMAQDLSVFLERVEKEKLADNKDIQPTQTHACSH"
misc_feature 217374..218387
/locus_tag="HPKB_0215"
/note="antiporter inner membrane protein; Provisional;
Region: PRK11670"
/db_xref="CDD:183270"
misc_feature 217377..217565
/locus_tag="HPKB_0215"
/note="Domain of unknown function DUF59; Region: DUF59;
cl00941"
/db_xref="CDD:212251"
misc_feature 217713..218288
/locus_tag="HPKB_0215"
/note="MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions...; Region:
MRP-like; cd02037"
/db_xref="CDD:73300"
gene complement(218486..219508)
/locus_tag="HPKB_0216"
/db_xref="GeneID:12340629"
CDS complement(218486..219508)
/locus_tag="HPKB_0216"
/note="Consensus COG by CONSORF: COG1442"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761749.1"
/db_xref="GI:384887238"
/db_xref="GeneID:12340629"
/translation="MVEGLSPENVAKLEETIAPFSAFSSIEFLDITDKGLEPRHNYYK
LDPLIAGEIKKLYLKLNSFSQKRFSKMIMCRFFFASLFPQYDKMIMFDVDTLFVGDIS
ESFFIPLDDHYFGAVREKDLIAMNRNSAKDLYELRQMHAKNIGVADAFPNLKEAQILF
DNYFNAGFLALNLKSWRKENLENQLMGFFLLKNEKLLFNDQDTLCFVCRGRILELPYS
YNAHPSFLDTPSFPSVKEARMLHFWGDKPWKLLSVIGAKKWHEALIQTPFKDAYFNAS
FLDHLFESFQNRDKEIHALNKILSFSDKRHSFETLLPRLSSKLLIEFLLFKAKQKVKR
LIKRVF"
misc_feature complement(218495..219505)
/locus_tag="HPKB_0216"
/note="Lipopolysaccharide biosynthesis proteins,
LPS:glycosyltransferases [Cell envelope biogenesis, outer
membrane]; Region: RfaJ; COG1442"
/db_xref="CDD:31631"
misc_feature complement(218762..219502)
/locus_tag="HPKB_0216"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
gene 219807..221159
/locus_tag="HPKB_0217"
/db_xref="GeneID:12340630"
CDS 219807..221159
/locus_tag="HPKB_0217"
/note="Candidate starts by CONSORF: 219756,219792,219807"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761750.1"
/db_xref="GI:384887239"
/db_xref="GeneID:12340630"
/translation="MLNQKVWLGLLALNGVFLNAFEYQISARVGSFSRIAFNQSVINS
KKGIYPTGSYVTTTGALQVDSSLLPKGIENHKLGFGVGGEIGSLAYDSTKFLIDEANP
KAGFQPANWYYMGRWEGYLMQHSQNWTREQKAQNARPYVLYNLYLDYQYKDIFGIKLG
RYPSKALFLSGFNQGFELFYRWKKFRIEWFSTFGRALANEQYIRDFYAPVNYKQKINY
GMHNLNLIYENKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWKSGWRIQTTFYAWFPL
YSDYLSKDYYRASLIGKKSASLFVFQRVHFRSYLFGWSVYKNFGNGSAQLGWNGSPID
PFYDTKDDTPYEDAYSNFYNANSITINAFIGKSIKNLLVQLYGKLTYSPRADSQSLGI
TFKYNIKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYFMSSMSYRF
"
misc_feature 219807..221156
/locus_tag="HPKB_0217"
/note="Putative outer membrane protein; Region: HP_OMP_2;
pfam02521"
/db_xref="CDD:145585"
gene 221262..223127
/gene="htpG"
/locus_tag="HPKB_0218"
/db_xref="GeneID:12340631"
CDS 221262..223127
/gene="htpG"
/locus_tag="HPKB_0218"
/note="Consensus COG by CONSORF: COG0326"
/codon_start=1
/transl_table=11
/product="heat shock protein 90"
/protein_id="YP_005761751.1"
/db_xref="GI:384887240"
/db_xref="GeneID:12340631"
/translation="MSNQEYTFQTEINQLLDLMIHSLYSNKEIFLRELISNASDALDK
LNYLMLTDEKLKGLNITPSIHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTK
SFLSALSGDKKKDSALIGQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFE
ISECVKEEQGTEITLFLKDEDSHFASRWEIDSVVKKYSEHIPFPIFLTYTDTKYEGEG
DNQKEIKEEKCDQINQASALWKMNKSELKDKDYKEFYQSFVHDNSEPLSYIHNKVEGS
LEYTTLFYIPSKAPFDMFRVDYKSGVKLYVKRVFITDDDKELLPSYLRFVKGVIDSED
LPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGLYG
DFENKEKLLELLRFYSKDKEKLVSLKEYKENLKENQKSIYYLLGENLDLLKASPLLEK
YAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDASHSESLKELGLEEINDEVKDQFKD
LMKAFEENLKDEIKGVELSSHLTSAVALIGDEQNAMMANWMRQMGQSVPESKKTLELN
PNHAILQKLLKCEDKEQLSAFIWLLYDGAKLLEKGTLKDAKSFNERLNSVLLKAL"
misc_feature 221262..223124
/gene="htpG"
/locus_tag="HPKB_0218"
/note="heat shock protein 90; Provisional; Region:
PRK05218"
/db_xref="CDD:179965"
misc_feature 221343..>221660
/gene="htpG"
/locus_tag="HPKB_0218"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(221358..221360,221370..221372,221379..221381,
221490..221492,221496..221498,221502..221504,
221508..221513,221628..221639)
/gene="htpG"
/locus_tag="HPKB_0218"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 221370..221372
/gene="htpG"
/locus_tag="HPKB_0218"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(221502..221504,221508..221510,221628..221630,
221634..221636)
/gene="htpG"
/locus_tag="HPKB_0218"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(223341..224093)
/locus_tag="HPKB_0219"
/db_xref="GeneID:12340632"
CDS complement(223341..224093)
/locus_tag="HPKB_0219"
/note="Consensus COG by CONSORF: COG0790"
/codon_start=1
/transl_table=11
/product="Sel1 repeat-containing protein"
/protein_id="YP_005761752.1"
/db_xref="GI:384887241"
/db_xref="GeneID:12340632"
/translation="MLGSVQKTLFGVLCLGALFLRGLMAEPDAKELVNLGIESAKKQD
FAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCRL
LGNLYYNGQGVSKDAKKASQYYSKSCELNHAEGCMVLGSLYHHGLGTPKDSRKALDLY
EKACDLKDSPGCINAGYMYGVAKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA
KDEKQAVENFKKGCKSSVKEACDALKELKIEL"
misc_feature complement(223809..224012)
/locus_tag="HPKB_0219"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(223806..223907)
/locus_tag="HPKB_0219"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(<223356..223895)
/locus_tag="HPKB_0219"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature complement(223698..223805)
/locus_tag="HPKB_0219"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(223590..223697)
/locus_tag="HPKB_0219"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(223395..223487)
/locus_tag="HPKB_0219"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(224179..225330)
/gene="dapE"
/locus_tag="HPKB_0220"
/db_xref="GeneID:12340633"
CDS complement(224179..225330)
/gene="dapE"
/locus_tag="HPKB_0220"
/note="Consensus COG by CONSORF: COG0624. Candidate starts
by CONSORF: 225381,225330"
/codon_start=1
/transl_table=11
/product="succinyl-diaminopimelate desuccinylase"
/protein_id="YP_005761753.1"
/db_xref="GI:384887242"
/db_xref="GeneID:12340633"
/translation="MDALEITQKLISYPTITPKECGIFEYIKSLFPTFKTLECGENGV
KNLFLYRIFNPPKEHTEEKHAKENVKPLHFCFAGHIDVVPPGNHWQSDPFKPIVKEGF
LYGRGAQDMKGGVGAFLSASLNFNPKTPFMLSVLLTSDEEGPGIFGTRLMLEKLKEKD
LLPHMAVVAEPTCEKVLGDSIKIGRRGSINGKLILKGVQGHAAYPQKCQNPIDALASV
LPLISGVHLDDGDEYFDPSKLVITNLHAGLGANNVTPASVEVIFNARHSLKTTKESLK
EYLEKVLKSTPYTLELESSSSPFITASHSKLASVLKENILKTCHATPLLNTKGGTSDA
RFFSAHGIEVVEFGVINDRIHAIDERVSLKELELLEKVFLGVLENLSEK"
misc_feature complement(224245..225330)
/gene="dapE"
/locus_tag="HPKB_0220"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK13009"
/db_xref="CDD:183838"
misc_feature complement(224245..225321)
/gene="dapE"
/locus_tag="HPKB_0220"
/note="M20 Peptidase proteobacterial DapE encoded
N-succinyl-L,L-diaminopimelic acid desuccinylase; Region:
M20_DapE_proteobac; cd03891"
/db_xref="CDD:193511"
misc_feature complement(order(224266..224268,224821..224823,
224905..224910,225001..225003,225094..225096))
/gene="dapE"
/locus_tag="HPKB_0220"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193511"
misc_feature complement(order(224344..224346,224536..224538,
224542..224544,224566..224571,224590..224613,
224617..224619,224662..224664,224671..224676,
224680..224685,224692..224697,224701..224703,
224719..224730,224761..224763))
/gene="dapE"
/locus_tag="HPKB_0220"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193511"
gene complement(225344..227204)
/locus_tag="HPKB_0221"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340634"
gene 227300..228958
/locus_tag="HPKB_0223"
/db_xref="GeneID:12340635"
CDS 227300..228958
/locus_tag="HPKB_0223"
/note="Consensus COG by CONSORF: COG0471"
/codon_start=1
/transl_table=11
/product="sodium-dependent transporter"
/protein_id="YP_005761754.1"
/db_xref="GI:384887243"
/db_xref="GeneID:12340635"
/translation="MENHSHANTHTDTRTDDKSTKIVRLLGLIGGVLIALIIYYALNA
QLSHIAEEIPKLSSLNYKAMPVVAGVAVLMGIWWMTEAIDLPATALLPLVLFSVFSVD
QFSSVSSSYASPIIFLFMGGFILALSMQKWNLHTRIALSIILLVGTSPRRLILGFMIA
TGFLSMWVSNTATAVMMLPIGMSVLQLVAKLVGKENASNSWHQKEEITKAHGGIMGNI
VHKGKDITQVVQEKTIIYRTNFSICLMLGIAYAASIGSLGTLIGTPPNALLAGYMKTA
FNIEIDFARWMVFGTPLAFIMLILSWLLLTYVIFPLKIKEIPGGKEVIRAELKKLGRL
SRAEISVGVIFILASLGWIFLDTILKSWGIKIDKIDSVIAMGVSALLFILPANNQGDR
LIDWGVAKKLPWDVLLLFGGGLALSTQFSKTGLSLWIGHLVSGFSHLPILFIIFMVTL
MVIFLTEITSNTATAAAFLPVIGGVAMGMGYENHQSLLLTIPVALSATCAFMLPVATP
PNAIAYGSGYVKITDMIKAGLWLNLVGVVLISAFSYFLVSLVFN"
misc_feature 227498..228952
/locus_tag="HPKB_0223"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:30819"
misc_feature 227501..228937
/locus_tag="HPKB_0223"
/note="Permease SLC13 (solute carrier 13). The
sodium/dicarboxylate cotransporter NaDC-1 has been shown
to translocate Krebs cycle intermediates such as
succinate, citrate, and alpha-ketoglutarate across plasma
membranes rabbit, human, and rat kidney. It is...; Region:
SLC13_permease; cd01115"
/db_xref="CDD:73247"
misc_feature order(227522..227533,227552..227593,227636..227689,
227759..227809,227813..227839,227849..227875,
228023..228094,228158..228202,228215..228241,
228347..228358,228395..228439,228503..228559,
228629..228676,228728..228739,228749..228796,
228884..228922)
/locus_tag="HPKB_0223"
/note="transmembrane helices; other site"
/db_xref="CDD:73247"
gene 228979..229779
/gene="cdsA"
/locus_tag="HPKB_0224"
/db_xref="GeneID:12340636"
CDS 228979..229779
/gene="cdsA"
/locus_tag="HPKB_0224"
/note="Consensus COG by CONSORF: COG0575"
/codon_start=1
/transl_table=11
/product="phosphatidate cytidylyltransferase"
/protein_id="YP_005761755.1"
/db_xref="GI:384887244"
/db_xref="GeneID:12340636"
/translation="MKEELFKEKSRYITGFVLIIVAGLILYADNLLLFWAVLGGVYVA
GFSEALRLFQVKASFSLYLILVLSWVAAYFNGHPIECALISAMVMASIIAYQKAHHSE
AILPFLYPGVGFFALFGVYKDFGAVAIIWLLVVVVASDVGAFFGGKLLGKTPFTPTSP
NKTLEGALIGVVLASVLGSFVGMGKLSGGFFMALLFSFLTALVAVFGDLYESYLKRKA
GIKDSGKILPGHGGVLDRLDSMLFGALGLHVLLYFLEVWKETAVFLGG"
misc_feature 229003..229740
/gene="cdsA"
/locus_tag="HPKB_0224"
/note="Cytidylyltransferase family; Region: CTP_transf_1;
pfam01148"
/db_xref="CDD:110170"
gene 229780..230886
/locus_tag="HPKB_0225"
/db_xref="GeneID:12340637"
CDS 229780..230886
/locus_tag="HPKB_0225"
/note="Consensus COG by CONSORF: COG0743"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="YP_005761756.1"
/db_xref="GI:384887245"
/db_xref="GeneID:12340637"
/translation="MVVLGSTGSIGKNALKIAKKFKVEIEALSCGKNIALINEQIKVF
KPKKVAILDPNDLNTLEPFGAKVFVGLEGIDAMIEECVSNLVINAIVGVAGLRASFKS
LQTNKKLALANKESLVSAGHLLDISQITPIDSEHFGLWALLQNKALKPKSLIISASGG
AFRDTPLELIPVQNAQNALKHPNWSMGSKITIDSASMVNKLFEILETYWLFGASLKID
ALIERSSIVHALVEFEDNSIIAHLASADMQLPISYAINPKLASLSASIKPLDLYALSA
IKFEPISMERYTLWRYKDLLLENPKLGVVLNASNEVAIEKFLNKEIAFGGLIKTISQA
LESYAKTPFKLSNLDEVLALDKEVRERFKNVARV"
misc_feature 229780..230883
/locus_tag="HPKB_0225"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: Dxr; TIGR00243"
/db_xref="CDD:161787"
misc_feature 229780..230142
/locus_tag="HPKB_0225"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:202340"
misc_feature 230164..230412
/locus_tag="HPKB_0225"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature 230506..230859
/locus_tag="HPKB_0225"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:205468"
gene 230937..232075
/locus_tag="HPKB_0226"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340638"
gene complement(232094..232645)
/locus_tag="HPKB_0228"
/db_xref="GeneID:12340639"
CDS complement(232094..232645)
/locus_tag="HPKB_0228"
/note="Consensus COG by CONSORF: COG1881"
/codon_start=1
/transl_table=11
/product="putative phospholipid binding protein"
/protein_id="YP_005761757.1"
/db_xref="GI:384887246"
/db_xref="GeneID:12340639"
/translation="MKTFEVMIQTDPQGYLDAKFGGNAPRGFLNPNGLPTYSPKISWQ
KVEGAQSYALELIDHDAQKVCGMSFVHWVVGNISHNVLEENASMMDKRIVQGVNSLTQ
GFIRSSLNESEKQRSNLNNSTYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLH
DKMRGHIIAIGRKEFLYKQFVRK"
misc_feature complement(232115..232585)
/locus_tag="HPKB_0228"
/note="PhosphatidylEthanolamine-Binding Protein (PEBP)
domain present in bacteria and archaea; Region:
PEBP_bact_arch; cd00865"
/db_xref="CDD:176643"
misc_feature complement(order(232238..232240,232244..232246,
232250..232252,232256..232270,232433..232435,
232439..232441,232469..232474))
/locus_tag="HPKB_0228"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176643"
gene 232790..233251
/locus_tag="HPKB_0229"
/db_xref="GeneID:12340640"
CDS 232790..233251
/locus_tag="HPKB_0229"
/note="Candidate starts by CONSORF: 232772,232790"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761758.1"
/db_xref="GI:384887247"
/db_xref="GeneID:12340640"
/translation="MESKINRLSAKIDALLEQQKRVISLLEAYLSVYPTQEASNKFFK
SVSQGMELAPEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNVPKPI
IVTALYNLRGIKPTKKEVAKQLQKLYVWEKRYQQGGIDALKDRRGRPLKKP"
misc_feature <233135..233236
/locus_tag="HPKB_0229"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
gene 233423..234586
/locus_tag="HPKB_0230"
/db_xref="GeneID:12340641"
CDS 233423..234586
/locus_tag="HPKB_0230"
/note="Consensus COG by CONSORF: COG1104"
/codon_start=1
/transl_table=11
/product="cysteine desulfurase"
/protein_id="YP_005761759.1"
/db_xref="GI:384887248"
/db_xref="GeneID:12340641"
/translation="MLQRIYLDNNATTRIDPKVKEIMDPFLRDHYGNPSSLHQFGTET
HPAIAEALDKLYKGINARDIDDVIITSCATESNNWVLKGVYFDECLKKGKNHIITTVA
EHPAVRSTCNFLESLGVEVTYLPINEHGSITADQVKEAITEKTALVSVMWANNETGLI
FPVEEIGAICKEKGVLFHTDAVQAIGKIPVDVLKANADFLSFSAHKFHGPKGIGGLYI
RSGVELTPLFHGGEHMNGRRSGTLNVPYIVGMGEAMRLAVEHLDYEKEVVGKLRDKLE
EALLKIPDVMVVGDRVHRVPNTTLISVRGIEGEAMLWDLNRSNIAASTGSACASEDLE
ANPVMVAIGASKELAHTAIRLSLSRFNTEAEIDKTIEVFSQAATRLRNISSSY"
misc_feature 233435..234580
/locus_tag="HPKB_0230"
/note="cysteine desulfurase, NifS family, epsilon
proteobacteria type; Region: nifS_epsilon; TIGR03403"
/db_xref="CDD:132444"
misc_feature 233438..234493
/locus_tag="HPKB_0230"
/note="cysteine desulfurase DndA; Region: DNA_S_dndA;
TIGR03235"
/db_xref="CDD:163191"
misc_feature order(233639..233644,233651..233653,233876..233878,
233960..233962,233969..233971,234029..234031,
234038..234040)
/locus_tag="HPKB_0230"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 234038..234040
/locus_tag="HPKB_0230"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 234608..235588
/locus_tag="HPKB_0231"
/db_xref="GeneID:12340642"
CDS 234608..235588
/locus_tag="HPKB_0231"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761760.1"
/db_xref="GI:384887249"
/db_xref="GeneID:12340642"
/translation="MAKHDLVGSVLWDAYSKEVQRRMDNPTHLGVITEDQAKAKNAKL
IVADYGAEACGDAVRLYWLVDESTDRIIDAKFKSFGCGTAIASSDMMVELCLNKRVQE
AVKITNLDVERGLRDEPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNAEDFEEEIIV
CECARVSLGTIKEVIKLNDLKSVEEITNYTKAGAFCKSCVRPGGHEKRDYYLVDILKE
VREEMEAEKLKATADKSQSGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEIL
DIKESDDYIDVYIRYMGACDGCMSATTGTLFAIENALQELLDRSIRVLPI"
misc_feature 234638..235585
/locus_tag="HPKB_0231"
/note="Fe-S cluster assembly protein NifU; Region:
NifU_proper; TIGR02000"
/db_xref="CDD:162652"
misc_feature 234650..235033
/locus_tag="HPKB_0231"
/note="Iron-sulfur cluster scaffold-like proteins; Region:
IscU_like; cd06664"
/db_xref="CDD:143480"
misc_feature order(234650..234658,234665..234670,234767..234772,
234848..234850,234854..234856,234986..234991,
234995..235000)
/locus_tag="HPKB_0231"
/note="trimerization site [polypeptide binding]; other
site"
/db_xref="CDD:143480"
misc_feature order(234767..234769,234848..234850,234998..235000)
/locus_tag="HPKB_0231"
/note="active site"
/db_xref="CDD:143480"
misc_feature 235082..235210
/locus_tag="HPKB_0231"
/note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD;
pfam04324"
/db_xref="CDD:202971"
misc_feature 235367..235585
/locus_tag="HPKB_0231"
/note="NifU-like domain; Region: NifU; pfam01106"
/db_xref="CDD:144628"
gene 235738..235971
/locus_tag="HPKB_0232"
/db_xref="GeneID:12340643"
CDS 235738..235971
/locus_tag="HPKB_0232"
/note="Candidate starts by CONSORF: 235735,235738"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761761.1"
/db_xref="GI:384887250"
/db_xref="GeneID:12340643"
/translation="MEKTENTDETHLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQ
KLEKMANEEEESVGSYIKRYILKALRKIEQNGA"
gene 236082..237428
/locus_tag="HPKB_0233"
/db_xref="GeneID:12340644"
CDS 236082..237428
/locus_tag="HPKB_0233"
/note="Consensus COG by CONSORF: COG1066. Candidate starts
by CONSORF: 236043,236058,236082"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadA"
/protein_id="YP_005761762.1"
/db_xref="GI:384887251"
/db_xref="GeneID:12340644"
/translation="MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVL
NTLKNPLPKVQKSVSIAEIEHEEVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGK
STLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRNIAVFIIGHITK
EGSIAGPRVLEHMVDSVLYFEGDPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAK
EASSLFFSQEEPMEGSAITITLEGSRALILEIQALVSECSFGAPKRLANGFDTNRLNM
LIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLG
EVSLNGRILEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM"
misc_feature 236082..237416
/locus_tag="HPKB_0233"
/note="DNA repair protein RadA; Region: sms; TIGR00416"
/db_xref="CDD:161868"
misc_feature 236103..237215
/locus_tag="HPKB_0233"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:29987"
misc_feature 236367..236390
/locus_tag="HPKB_0233"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:29987"
misc_feature order(236370..236372,236382..236390,236445..236447,
236451..236453,236595..236600)
/locus_tag="HPKB_0233"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29987"
misc_feature 236586..236597
/locus_tag="HPKB_0233"
/note="Walker B motif; other site"
/db_xref="CDD:29987"
misc_feature <237090..237356
/locus_tag="HPKB_0233"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
cl12214"
/db_xref="CDD:209472"
gene 237569..238630
/locus_tag="HPKB_0234"
/db_xref="GeneID:12340645"
CDS 237569..238630
/locus_tag="HPKB_0234"
/note="Candidate starts by CONSORF: 237551,237569"
/codon_start=1
/transl_table=11
/product="methionine-R-sulfoxide reductase"
/protein_id="YP_005761763.1"
/db_xref="GI:384887252"
/db_xref="GeneID:12340645"
/translation="MKHFYLFLLIGAFMQANENMGSKHQKTDERVIYLAGGCFWGLEA
YMERIYGVIDASSGYANGKTSSTNYEKLHQSDHAESVKVIYDPKKISLDKLLRYYFKV
IDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDHALKALQKEVKGKIAIEVEPLKNYV
RAEEYHQDYLKKNPGGYCHIDLKKADEVIVDDDKYTKPSDEVLKKKLTKLQYEVTQNK
YTEKPFENEYYNKEEEGIYVDITTGEPLFSSADKYDSGCGWPSFSKPINKDVVKYEDD
ESLNRKRIEVLSRIGKAHLGHVFNDGPKELGGLRYCINSAALRFIPLKDMEKEGYGEF
IPYIKKGELKKYIQDKKTH"
misc_feature 237644..238144
/locus_tag="HPKB_0234"
/note="Peptide methionine sulfoxide reductase
[Posttranslational modification, protein turnover,
chaperones]; Region: MsrA; COG0225"
/db_xref="CDD:30574"
misc_feature 238148..238576
/locus_tag="HPKB_0234"
/note="methionine sulfoxide reductase B; Provisional;
Region: PRK00222"
/db_xref="CDD:178935"
misc_feature 238166..238534
/locus_tag="HPKB_0234"
/note="SelR domain; Region: SelR; pfam01641"
/db_xref="CDD:201899"
gene complement(239097..239930)
/locus_tag="HPKB_0235"
/db_xref="GeneID:12340646"
CDS complement(239097..239930)
/locus_tag="HPKB_0235"
/note="Consensus COG by CONSORF: COG0730"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761764.1"
/db_xref="GI:384887253"
/db_xref="GeneID:12340646"
/translation="MEESTAFILALVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSH
AVGISLMQMLFSSVVGSIINYKKGLLDLKEGSFAAFGGLMGAILGSFILKIIDDKILM
AVFVVVVCYTFIKYAFSNNKKPEHFEEMHFDLHANNKTPEKKRPIPFVSMDRTHGVLM
LAGFVTGIFSIPLGMGGGILMVPFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNG
RVLDDISVQAGVITGIGAFLGVGIGIKLIALANEKVHKILLLLIYALSILATLHKLIM
G"
misc_feature complement(239163..239843)
/locus_tag="HPKB_0235"
/note="Predicted permeases [General function prediction
only]; Region: COG0730"
/db_xref="CDD:31074"
misc_feature complement(239163..239843)
/locus_tag="HPKB_0235"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:202049"
gene complement(240101..242266)
/locus_tag="HPKB_0236"
/db_xref="GeneID:12340647"
CDS complement(240101..242266)
/locus_tag="HPKB_0236"
/note="Candidate starts by CONSORF:
242266,242239,242230,242224,242176"
/codon_start=1
/transl_table=11
/product="outer membrane protein (omp29)"
/protein_id="YP_005761765.1"
/db_xref="GI:384887254"
/db_xref="GeneID:12340647"
/translation="MIEWRNFINMTIMGMSWECETNKNLLKGENMKIKKSLLLSLSLM
ASLSRAEDDGFYMSVGYQIGEAVQQVKNTGALQNLADKYDNLSNLLNQYNYLNSLVNL
ASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIALFIGCGPGP
TNNQSYQSFGNTPALNGTITTCNQAYGTGPNGILSIDEYQKLNKAYQIIQTALNQGGG
MPALNDTTKTGVVNIQQTNYNTTKQNNIIQHYYDENGKEIPTYYSGGASFSPTIQLKY
HNNAEYLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPGNVVDIFDPSFNAINEMI
KNAQTALAKTQQLNANENAQITQPNNFNPYTSKNKQFAQEMLNRAEAQAEILGLAKQV
ANNFHSIQGPIQGDLEECKAGSAGVITSNTWGSGCAFVKETLNSLEQHTAYYGNQVNQ
EKALAQTILDFKGALNTLNNDSKAINSAISGLPNAKSLQNMTHSVQNPNSPEGLLTYS
LDTDKYNQLQATTQELGKNPFRRIGVIDTQSNNGAMNGIGVQMGYKQFFGKKRNWGLR
YYGFFDYNHAFIKSSFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGG
FALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKNSDHAAQH
GIELGFKIPTINTSYYSFMGAKLEYRRMYSLFLNYVFAY"
misc_feature complement(240104..240625)
/locus_tag="HPKB_0236"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 242436..243593
/locus_tag="HPKB_0237"
/db_xref="GeneID:12340648"
CDS 242436..243593
/locus_tag="HPKB_0237"
/note="Consensus COG by CONSORF: COG0659. Candidate starts
by CONSORF: 242382,242388,242421,242436"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761766.1"
/db_xref="GI:384887255"
/db_xref="GeneID:12340648"
/translation="MLEKIQKEWLSNIQKDLLSGFVVGLSVIPETAGFAIMVGLDVGV
AFYTTFYMAFVLSLFGARKAMISAAAGSVALILVGVVKKYGLEYAGVATLMAGVLQIL
LGYLKIGNLLRFIPQSVMYGFVNALGILLLMEQFKFLQNQNLGVFILLFIGILIIYLF
PLITKKIPSNLICILIVSAIALIFDTHAPNLGSIEQGVSGFHCIIIPKNLDFKILIGL
LPYALSLALVGTIESLLTAKTLDVILKDGVSDKNKETKAQGLGNIISGLLGGMTGCAL
VGQSIINAKSGAKTRLSTFFAGFSLMVLVLVFNEYVVKIPIVAVVAVMVMISFTTFNF
QSITNIKKIKPYDTLNMLLVVAVVLYTHNLAIGVVVGVLVNALWIKSKGIA"
misc_feature 242436..>243581
/locus_tag="HPKB_0237"
/note="Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism];
Region: SUL1; COG0659"
/db_xref="CDD:31004"
misc_feature 242436..242678
/locus_tag="HPKB_0237"
/note="Sulfate transporter N-terminal domain with GLY
motif; Region: Sulfate_tra_GLY; pfam13792"
/db_xref="CDD:205965"
misc_feature 242742..243482
/locus_tag="HPKB_0237"
/note="Sulfate transporter family; Region: Sulfate_transp;
pfam00916"
/db_xref="CDD:144493"
gene complement(243629..243703)
/gene="trnN"
/locus_tag="HPKB_0238"
/db_xref="GeneID:12340649"
tRNA complement(243629..243703)
/gene="trnN"
/locus_tag="HPKB_0238"
/product="tRNA-Asn"
/db_xref="GeneID:12340649"
gene complement(243833..245284)
/gene="omp6"
/locus_tag="HPKB_0239"
/db_xref="GeneID:12340650"
CDS complement(243833..245284)
/gene="omp6"
/locus_tag="HPKB_0239"
/note="Consensus COG by CONSORF: COG0840. Candidate starts
by CONSORF: 245317,245284"
/codon_start=1
/transl_table=11
/product="outer membrane protein (omp6)"
/protein_id="YP_005761767.1"
/db_xref="GI:384887256"
/db_xref="GeneID:12340650"
/translation="MKKTILLSLMVSSLLAEDDGVFMSVGYQIGEAVQQVKNTGEIQK
VSNAYENLNNLLTRYNELKQTASNTDSSTAQAIDNLKESASRLKTTPNSANQAVSSAL
SSAVAMWQVIASNLANGTLPTDKYNEINATSQLLQNTLENKNNELKIENDYDQLLTQA
KTIINTLQSQCPGIDGGNGKPWGINASGNACNIFGNTFNAITSMIDSAKKAAEQSRRT
SPESPNQQSAFTNADFTKNLNQVSSVINDTISYLKGENLETIYNTLQKTPGSKGFQSL
VSRSSYSYSLNETQYSEFQTTTKEFGNNPFRSVGLINSQSNNGAMNGVGVQLGYKQFF
GKNKFFGIRYYGFFDYNHAYIKSNFFNSASNVFTYGAGSDLLLNFINGGSDKNRKISF
GIFGGIALAGTTWLNSQSVNLKTTTSIYNAKINNTNFQFLFNTGLRLQGIHHGVELGV
KIPTINTNYYSFMGAKLAFRRLYSVYFNYVLAY"
misc_feature complement(243836..244312)
/gene="omp6"
/locus_tag="HPKB_0239"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(245471..246202)
/locus_tag="HPKB_0240"
/db_xref="GeneID:12340651"
CDS complement(245471..246202)
/locus_tag="HPKB_0240"
/note="Consensus COG by CONSORF: COG1212"
/codon_start=1
/transl_table=11
/product="3-deoxy-manno-octulosonate cytidylyl
transferase"
/protein_id="YP_005761768.1"
/db_xref="GI:384887257"
/db_xref="GeneID:12340651"
/translation="MIIIPARLKSSRFENKVLEDIFGLPMVVRCAKNANLVDECVIAC
DDESIMQTCQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKE
VILALLEATKNAPFMATCAKVIDEERAKSPNLVKVVLDSQNNALYFSRSLIPFLRDAD
MKRQTPLLGHIGIYGFHNKEILEELCALKPCVLEELEKLEQLRALYYQKKIAVKIVQS
QSVGIDTKEDLENALKIFSPNSFER"
misc_feature complement(245498..246199)
/locus_tag="HPKB_0240"
/note="CMP-KDO synthetase catalyzes the activation of KDO
which is an essential component of the lipopolysaccharide;
Region: CMP-KDO-Synthetase; cd02517"
/db_xref="CDD:133010"
misc_feature complement(order(245918..245920,245924..245926,
245993..245995,246074..246076,246182..246190))
/locus_tag="HPKB_0240"
/note="Ligand binding site; other site"
/db_xref="CDD:133010"
misc_feature complement(order(245579..245590,245609..245617,
245624..245629,245705..245707,245738..245758,
245762..245767,245783..245791,245807..245809,
245855..245857))
/locus_tag="HPKB_0240"
/note="oligomer interface; other site"
/db_xref="CDD:133010"
gene 246312..247109
/locus_tag="HPKB_0241"
/db_xref="GeneID:12340652"
CDS 246312..247109
/locus_tag="HPKB_0241"
/note="Consensus COG by CONSORF: COG1651"
/codon_start=1
/transl_table=11
/product="disulfide isomerase"
/protein_id="YP_005761769.1"
/db_xref="GI:384887258"
/db_xref="GeneID:12340652"
/translation="MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTN
KKVRILEIKPLKSSQDLKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSEDVQ
LVAETNQKIQALNATQQNSAKLNAIFNEIPADYAIELPSTNAKNKDKILYIVSDPMCP
HCQKELTKLRDHLKENTVRMVVVGWLGANSAKKAALIQEEMAKARARGASVEDKISIL
EKIYSTQYDINAQKEPEDLRTKVENTTKKIFESGMIKGVPFLYHYKA"
misc_feature 246402..247106
/locus_tag="HPKB_0241"
/note="Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones]; Region: DsbG;
COG1651"
/db_xref="CDD:31837"
misc_feature <246651..>246902
/locus_tag="HPKB_0241"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
gene 247128..247781
/locus_tag="HPKB_0242"
/db_xref="GeneID:12340653"
CDS 247128..247781
/locus_tag="HPKB_0242"
/note="Candidate starts by CONSORF: 247125,247128"
/codon_start=1
/transl_table=11
/product="motility protein"
/protein_id="YP_005761770.1"
/db_xref="GI:384887259"
/db_xref="GeneID:12340653"
/translation="MKKPYRKISDYAIVGGLSALVMVSIVGCKSNADDKPKEQSSLSQ
SVQKGAFVILEEQKDKSYKVVEEYPSSRTHIVVRDLQGNERVLSNEEIQKLIKEEEAK
IDNGTSKLIQPNNGGGGGNESSGFGLGSAILGSAAGAILGSYIGNKLFNNPNYQQNAQ
RTYKSPQAYQRSQNSFSKSAPSASSMGGASKGQSGFFGSSRPTSSPAVSSGTRGFNS"
misc_feature 247131..>247640
/locus_tag="HPKB_0242"
/note="hypothetical protein; Provisional; Region:
PRK04081"
/db_xref="CDD:179737"
gene 247805..248977
/locus_tag="HPKB_0243"
/db_xref="GeneID:12340654"
CDS 247805..248977
/locus_tag="HPKB_0243"
/note="Consensus COG by CONSORF: COG0754"
/codon_start=1
/transl_table=11
/product="glutathionylspermidine synthase"
/protein_id="YP_005761771.1"
/db_xref="GI:384887260"
/db_xref="GeneID:12340654"
/translation="MQVIPLKPLDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEAD
AYYDACNELYDMFVETAEEAIKNDCFFELDIPNALIPMIKQSFEEEVHWHIYGRFDLA
GGLDGKPIKLLEFNADTPTMLYETAVIQWALLKANGYDENKQFNNLYEALGENFKRMV
TLGEDTSRFEEMYEGWKILFSSVRGNIEEERTMRFLQDAAQSVGFETDFSYIDEVEFN
IEEGVFKNGLNYEFLFKLIPWENIAIDEPELALLMQGMMENKNTIFLNPAYTILFQSK
RFLKLLWDRYPNHPLLLETSYEPLSHKKQIKKVAFGREGANSEIFEASMQSLLKTDGV
YSNHKPVYQEFYELNSHNGLYYQPNVFFAYESCALGFRKGGLILDNFSKFVSHMLQ"
misc_feature 247814..248974
/locus_tag="HPKB_0243"
/note="Glutathionylspermidine synthase [Amino acid
transport and metabolism]; Region: Gsp; COG0754"
/db_xref="CDD:31097"
gene 248977..249507
/locus_tag="HPKB_0244"
/db_xref="GeneID:12340655"
CDS 248977..249507
/locus_tag="HPKB_0244"
/codon_start=1
/transl_table=11
/product="integral membrane protein"
/protein_id="YP_005761772.1"
/db_xref="GI:384887261"
/db_xref="GeneID:12340655"
/translation="MSAMMRYFHIYATTFFFPLALLFAVSGFSLLLGVRQDTGAKIKE
WVLEKSLKKEERLDFLKDFLKENHIAMPKKIEPREHRGALVIGTPLYEINLETKGAQT
KIKTIERGFLGTLIMLHKAKVGIVFQVLLGIFCVFLLLFYLSAFLMVAFKDTKRMFIS
VLIGSVVFFGAIYWSL"
misc_feature <249250..249477
/locus_tag="HPKB_0244"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3295"
/db_xref="CDD:33104"
gene complement(250275..251336)
/locus_tag="HPKB_0245"
/db_xref="GeneID:12340656"
CDS complement(250275..251336)
/locus_tag="HPKB_0245"
/note="Consensus COG by CONSORF: COG0790"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761773.1"
/db_xref="GI:384887262"
/db_xref="GeneID:12340656"
/translation="MSVKILKILVCGLFFLNAHLWGKQDNSFLGVAERAYKSGNYSKA
ASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYQSACQADDREGCFGLGGL
YDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSCNF
DMAKGCYVLGVAYEKGFLEVQQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLD
EDFEVAFDYLQKACGLNNSGGCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSC
SRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGMYYNMKDKENAIMIYDK
GCKLGMKQACENLTKLRGY"
misc_feature complement(250341..251264)
/locus_tag="HPKB_0245"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature complement(251061..251168)
/locus_tag="HPKB_0245"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(250953..251057)
/locus_tag="HPKB_0245"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(250740..250850)
/locus_tag="HPKB_0245"
/note="Sel1 repeat; Region: Sel1; cl02723"
/db_xref="CDD:207711"
misc_feature complement(250521..250622)
/locus_tag="HPKB_0245"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(250413..250520)
/locus_tag="HPKB_0245"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(251431..251802)
/locus_tag="HPKB_0246"
/db_xref="GeneID:12340657"
CDS complement(251431..251802)
/locus_tag="HPKB_0246"
/note="Consensus COG by CONSORF: COG2010"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761774.1"
/db_xref="GI:384887263"
/db_xref="GeneID:12340657"
/translation="MRLFIALVLFGWWLSLNAKEADFISDLEYGMALYKNPRGVACAK
CHGIKGEKQEITFYYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQ
AIYLYITSLVHKEERKEPFKP"
misc_feature complement(251479..251715)
/locus_tag="HPKB_0246"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene complement(251802..252722)
/gene="hemC"
/locus_tag="HPKB_0247"
/db_xref="GeneID:12340658"
CDS complement(251802..252722)
/gene="hemC"
/locus_tag="HPKB_0247"
/note="Consensus COG by CONSORF: COG0181"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_005761775.1"
/db_xref="GI:384887264"
/db_xref="GeneID:12340658"
/translation="MGNLVIGSRGSELALWQANHIKERLKKECLIESEIQIVKTKGDK
ILDTPLNKIGGKGLFTKELEELLLKGEIDLAVHSLKDVPVVFEKGLDLACITKRADVR
DTFLSMKFPDLMSLPKGAKVGTTSLRRSMQLKLKRQDLDTESLRGNVQTRLKKLECGE
FDAIILAEAGLCRLEIQGAKYRKAFSVEEMIPSMGQGALGVEMLKSHKHFATLQKLND
EKSAFCCHLEREFVKGLNGGCQIPIGVHASLMGDRVKIQAVLGLPNGKEVITKEKQGD
KTKALDLVQELLEAFLQSGAKEILEKVQLF"
misc_feature complement(251844..252722)
/gene="hemC"
/locus_tag="HPKB_0247"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:178840"
misc_feature complement(251844..252713)
/gene="hemC"
/locus_tag="HPKB_0247"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cd00494"
/db_xref="CDD:29604"
misc_feature complement(order(251913..251915,251919..251921,
251928..251930,251937..251939,251952..251954,
251988..251990,251994..251996,252006..252008,
252027..252029,252036..252041,252051..252053,
252060..252062,252078..252080,252132..252155,
252204..252209,252216..252218,252279..252281,
252318..252320,252330..252335,252339..252341,
252414..252431,252435..252440,252465..252467,
252471..252488,252675..252677,252690..252692))
/gene="hemC"
/locus_tag="HPKB_0247"
/note="domain interfaces; other site"
/db_xref="CDD:29604"
misc_feature complement(order(252006..252008,252132..252137,
252144..252146,252204..252206,252213..252215,
252222..252230,252267..252269,252288..252290,
252336..252341,252345..252353,252480..252485,
252489..252491,252672..252674,252684..252686))
/gene="hemC"
/locus_tag="HPKB_0247"
/note="active site"
/db_xref="CDD:29604"
gene complement(252733..254466)
/locus_tag="HPKB_0248"
/db_xref="GeneID:12340659"
CDS complement(252733..254466)
/locus_tag="HPKB_0248"
/note="Consensus COG by CONSORF: COG0442"
/codon_start=1
/transl_table=11
/product="prolyl-tRNA synthetase"
/protein_id="YP_005761776.1"
/db_xref="GI:384887265"
/db_xref="GeneID:12340659"
/translation="MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLP
LAKKVLDKIENITHKRMQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDN
DFVLSPTLEENITEIAANFIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDG
YSFHEDAESLDKEFLNMQSAYKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGE
DTIVVCKNCDYAANIEIAKRSKRLEPLNVPKAQLAKFPTPNTTSAQSVAEFFKTEPYF
VLKALVRKVIHKDKETLACFFVRGDDNLEEVKALNALNLLGANALELREASKEDLNNA
GLIAGFIGPYGLKKHASYIIFDEDLKEGDCLIVGANEKDFHAVGVDLKGFENLVYADI
VQVKESDHCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYG
IGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKG
VDVLLDDRDARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTLKDIEL
EEKILELLESE"
misc_feature complement(252787..254466)
/locus_tag="HPKB_0248"
/note="prolyl-tRNA synthetase, family II; Region:
proS_fam_II; TIGR00409"
/db_xref="CDD:161864"
misc_feature complement(<253822..254418)
/locus_tag="HPKB_0248"
/note="Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is responsible
for the attachment of proline to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent formation of...; Region:
ProRS_core_prok; cd00779"
/db_xref="CDD:73229"
misc_feature complement(order(254005..254007,254056..254058,
254116..254118,254170..254184,254188..254190,
254248..254253,254257..254265,254314..254316,
254335..254346,254365..254370))
/locus_tag="HPKB_0248"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73229"
misc_feature complement(254248..254271)
/locus_tag="HPKB_0248"
/note="motif 1; other site"
/db_xref="CDD:73229"
misc_feature complement(order(253990..253992,253996..253998,
254002..254004,254011..254019,254041..254043,
254047..254049,254134..254136,254140..254142))
/locus_tag="HPKB_0248"
/note="active site"
/db_xref="CDD:73229"
misc_feature complement(254041..254052)
/locus_tag="HPKB_0248"
/note="motif 2; other site"
/db_xref="CDD:73229"
misc_feature complement(253291..253791)
/locus_tag="HPKB_0248"
/note="INS is an amino acid-editing domain inserted (INS)
into the bacterial class II prolyl-tRNA synthetase (ProRS)
however, this CD is not exclusively bacterial. It is also
found at the N-terminus of the eukaryotic/archaea-like
ProRS's of yeasts and...; Region: ProRS-INS; cd04334"
/db_xref="CDD:88585"
misc_feature complement(order(253363..253365,253447..253452,
253630..253632))
/locus_tag="HPKB_0248"
/note="putative deacylase active site [active]"
/db_xref="CDD:88585"
misc_feature complement(253078..>253248)
/locus_tag="HPKB_0248"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature complement(order(253102..253104,253111..253116,
253120..253125,253213..253215,253225..253230))
/locus_tag="HPKB_0248"
/note="active site"
/db_xref="CDD:29813"
misc_feature complement(order(253102..253104,253111..253113))
/locus_tag="HPKB_0248"
/note="motif 3; other site"
/db_xref="CDD:29813"
misc_feature complement(252787..253035)
/locus_tag="HPKB_0248"
/note="ProRS Prolyl-anticodon binding domain, short
version found predominantly in bacteria. ProRS belongs to
class II aminoacyl-tRNA synthetases (aaRS). This alignment
contains the anticodon binding domain, which is
responsible for specificity in tRNA-binding; Region:
ProRS_anticodon_short; cd00861"
/db_xref="CDD:29801"
misc_feature complement(order(252814..252816,252820..252822,
252850..252852,252874..252876,252892..252894,
253006..253011))
/locus_tag="HPKB_0248"
/note="anticodon binding site; other site"
/db_xref="CDD:29801"
gene complement(254470..255819)
/gene="hemA"
/locus_tag="HPKB_0249"
/db_xref="GeneID:12340660"
CDS complement(254470..255819)
/gene="hemA"
/locus_tag="HPKB_0249"
/note="Consensus COG by CONSORF: COG0373"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA reductase"
/protein_id="YP_005761777.1"
/db_xref="GI:384887266"
/db_xref="GeneID:12340660"
/translation="MELETHLSKYFTLAFTHKSMSLEMREKLAINSPVVLKEFLQTIK
NHCPNIKECMVLSTCNRFEIYASLKHNTHANEQKSALLKILAQNKKMSVSDLEKCVLM
SVDESAVHHVFSVCSSLDSLVVGETQITGQMKNAYKFAFEEKFCSKDLTRLLHFAFKC
AAKVRNLTGISKQGVSISSVAVKEALNIFEKERIKDKKALVIGLGEMAQLVIKHLLNK
QFETLILGRNEAKFEDFIKELEEPKKVSFQNIENLNAYINEYQLLFCATSSPHFIVQN
DMLKETIFRRFWFDLAVPRNIEKPVLDNIFLYSVDDLEPMVKENVENRQESRTKAYEI
VGLATMEFYQWIQSLEVEPVIKDLRELARISAQKELQKALKKRYVPKECESNIEKILH
NAFNTFLHHPTIALKKNAQKEESDVLVGAIKNLFNLDKSSANHAQNLNLYKCEYYEE"
misc_feature complement(254533..255792)
/gene="hemA"
/locus_tag="HPKB_0249"
/note="glutamyl-tRNA reductase; Region: hemA; TIGR01035"
/db_xref="CDD:211619"
misc_feature complement(254839..255792)
/gene="hemA"
/locus_tag="HPKB_0249"
/note="NADP-binding domain of glutamyl-tRNA reductase;
Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213"
/db_xref="CDD:133452"
misc_feature complement(order(255394..255396,255406..255408,
255415..255417,255427..255429,255436..255438,
255646..255648,255742..255744))
/gene="hemA"
/locus_tag="HPKB_0249"
/note="tRNA; other site"
/db_xref="CDD:133452"
misc_feature complement(order(255424..255426,255436..255438,
255442..255444,255457..255459,255637..255639,
255643..255648))
/gene="hemA"
/locus_tag="HPKB_0249"
/note="putative tRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:133452"
misc_feature complement(order(255196..255198,255205..255207,
255211..255213))
/gene="hemA"
/locus_tag="HPKB_0249"
/note="putative NADP binding site [chemical binding];
other site"
/db_xref="CDD:133452"
misc_feature complement(254533..254832)
/gene="hemA"
/locus_tag="HPKB_0249"
/note="Glutamyl-tRNAGlu reductase, dimerisation domain;
Region: GlutR_dimer; pfam00745"
/db_xref="CDD:201424"
gene complement(255819..256742)
/locus_tag="HPKB_0250"
/db_xref="GeneID:12340661"
CDS complement(255819..256742)
/locus_tag="HPKB_0250"
/note="Consensus COG by CONSORF: COG0142"
/codon_start=1
/transl_table=11
/product="putative octaprenyl-diphosphate synthase"
/protein_id="YP_005761778.1"
/db_xref="GI:384887267"
/db_xref="GeneID:12340661"
/translation="MQEKQLKTIQNKIASWIKEIESGFIDELFSKIGPSKMLRSKLML
ALLDEKTDAILLDKAFNLCAIVEMIQTASLLHDDVIDKATMRRKLPSINALFGDFNAV
MLGDVFYSKAFFELSKMGELIAKTLSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILE
DKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFS
DFKEGKTTLPYLLLYEKLNQHEQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTA
QAYSKKALEAIKKENNLILEKLAQDVIYRTF"
misc_feature complement(255822..256742)
/locus_tag="HPKB_0250"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature complement(255828..256637)
/locus_tag="HPKB_0250"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(256071..256073,256086..256088,
256101..256103,256131..256133,256140..256145,
256245..256247,256254..256259,256320..256322,
256329..256331,256482..256487,256500..256505,
256509..256517,256521..256529,256536..256538))
/locus_tag="HPKB_0250"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(256500..256529)
/locus_tag="HPKB_0250"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(256071..256073,256086..256088,
256101..256103,256131..256133,256140..256145,
256257..256259,256320..256322,256482..256487,
256500..256502,256509..256514))
/locus_tag="HPKB_0250"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(256140..256145,256257..256259,
256482..256487,256500..256502,256509..256514))
/locus_tag="HPKB_0250"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(256257..256259,256320..256322,
256482..256487,256500..256502,256509..256514))
/locus_tag="HPKB_0250"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(256065..256079,256086..256103,
256119..256124,256452..256496))
/locus_tag="HPKB_0250"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(256071..256073,256086..256088,
256101..256103,256131..256133,256140..256145))
/locus_tag="HPKB_0250"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(256752..257147)
/locus_tag="HPKB_0251"
/db_xref="GeneID:12340662"
CDS complement(256752..257147)
/locus_tag="HPKB_0251"
/note="Candidate starts by CONSORF: 257153,257147"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761779.1"
/db_xref="GI:384887268"
/db_xref="GeneID:12340662"
/translation="MNELIRYGLIFLFFLKVFGLDYGIDKTLELKKDEVFKAIIKDTS
NEQTKEITLYWTLYANKGLVINMRFNHFPYQFILYTDHARNTYNLKVFEEKFSSNSIL
SLVFKDFKEDKATLRLLALMPLVFSPKEP"
gene complement(257140..257424)
/locus_tag="HPKB_0252"
/db_xref="GeneID:12340663"
CDS complement(257140..257424)
/locus_tag="HPKB_0252"
/note="Candidate starts by CONSORF: 257472,257424"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761780.1"
/db_xref="GI:384887269"
/db_xref="GeneID:12340663"
/translation="MRDYSELEIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALL
ETFIEKEDLEEKFESFAKALRMDEELQQKIESRKTDIVIQSMANILSGNE"
misc_feature complement(257143..257397)
/locus_tag="HPKB_0252"
/note="Domain of unknown function (DUF2018); Region:
DUF2018; pfam09442"
/db_xref="CDD:150197"
gene complement(257445..257879)
/locus_tag="HPKB_0253"
/db_xref="GeneID:12340664"
CDS complement(257445..257879)
/locus_tag="HPKB_0253"
/note="Consensus COG by CONSORF: COG0783. Candidate starts
by CONSORF: 257882,257879"
/codon_start=1
/transl_table=11
/product="neutrophil activating protein (napA)
(bacterioferritin)"
/protein_id="YP_005761781.1"
/db_xref="GI:384887270"
/db_xref="GeneID:12340664"
/translation="MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIY
EEFADMFDDLAERIVQLGHHPLVTLTEALKLTRVKEETKTSFHSKDIFKEILEDYKYL
EKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA"
misc_feature complement(257448..257879)
/locus_tag="HPKB_0253"
/note="DNA-binding ferritin-like protein (oxidative damage
protectant) [Inorganic ion transport and metabolism];
Region: Dps; COG0783"
/db_xref="CDD:31126"
misc_feature complement(257451..257867)
/locus_tag="HPKB_0253"
/note="DPS protein, ferritin-like diiron-binding domain;
Region: DPS; cd01043"
/db_xref="CDD:153102"
misc_feature complement(order(257712..257717,257724..257726,
257736..257738,257769..257771,257802..257807,
257811..257813,257823..257828))
/locus_tag="HPKB_0253"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153102"
misc_feature complement(order(257712..257714,257724..257726,
257757..257759,257769..257771,257805..257807))
/locus_tag="HPKB_0253"
/note="DPS ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153102"
misc_feature complement(order(257499..257504,257523..257525))
/locus_tag="HPKB_0253"
/note="ion pore; other site"
/db_xref="CDD:153102"
gene complement(258085..259230)
/locus_tag="HPKB_0254"
/db_xref="GeneID:12340665"
CDS complement(258085..259230)
/locus_tag="HPKB_0254"
/note="Consensus COG by CONSORF: COG0642"
/codon_start=1
/transl_table=11
/product="sensory histidine kinase AtoS"
/protein_id="YP_005761782.1"
/db_xref="GI:384887271"
/db_xref="GeneID:12340665"
/translation="MKKSKRLKRPYLKRSHLKHSYKASSFKGLLKKEDNVISLENFKP
KESEDLLENFSNKKDMQELLGLLNQFILQSYKVEKEFKDYKALYEWVIEILPQAIWVV
NENGSFFYKNSLANQSHEVFNKAKLENFNTEIEHENKSYLVQQNSIQGKQIITATDIS
AQKRQERLASMGKISAHLAHEIRNPVGSISLLASVLLKHANEKTKPIVVELQKALWRV
ERIIKATLLFSKGIQANRTKQSLKTLESDLKEALNCYTYSKDIDFLFNFSDEEGFFDF
DLMGIVLQNFLYNAIDAIEALEESEQGQVKIEAFIQNEFIVFTIIDNGKEVENKSALF
EPFETTKLKGNGLGLALSLQVVKAHEGSIALLENQEKTFEIKILNAS"
misc_feature complement(258100..259044)
/locus_tag="HPKB_0254"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(258541..258729)
/locus_tag="HPKB_0254"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(258556..258558,258568..258570,
258577..258579,258589..258591,258598..258600,
258610..258612,258655..258657,258664..258666,
258676..258678,258685..258687,258697..258699,
258709..258711))
/locus_tag="HPKB_0254"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(258691..258693)
/locus_tag="HPKB_0254"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(258100..258387)
/locus_tag="HPKB_0254"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(258112..258114,258130..258132,
258136..258138,258184..258195,258259..258261,
258265..258267,258271..258273,258355..258357,
258364..258366,258376..258378))
/locus_tag="HPKB_0254"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(258364..258366)
/locus_tag="HPKB_0254"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(258187..258189,258193..258195,
258259..258261))
/locus_tag="HPKB_0254"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(259227..259544)
/locus_tag="HPKB_0255"
/db_xref="GeneID:12340666"
CDS complement(259227..259544)
/locus_tag="HPKB_0255"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761783.1"
/db_xref="GI:384887272"
/db_xref="GeneID:12340666"
/translation="MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEA
LLLKFMLDSAMKMDNPLYPKAPGDEIYTSMYKDTLSKELSGNFGYSEMLFNFLKEQEK
QKP"
gene complement(259541..260569)
/gene="flgI"
/locus_tag="HPKB_0256"
/db_xref="GeneID:12340667"
CDS complement(259541..260569)
/gene="flgI"
/locus_tag="HPKB_0256"
/note="Consensus COG by CONSORF: COG1706"
/codon_start=1
/transl_table=11
/product="flagellar basal body P-ring protein"
/protein_id="YP_005761784.1"
/db_xref="GI:384887273"
/db_xref="GeneID:12340667"
/translation="MKRVFLWLIFVLAFHKLLAEKIGDIASVVGVRDNQLIGYGLVIG
LNGTGDKSGSKFTMQSISNMLESVNVKISADDIKSKNVAAVMITASLPPFARQGDKID
VQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQGAITSGNSNNLLSAHIINGATIER
EVSYDLFHKNAMVLSLKNPNFKNAIQVQNTLNKVFGNKVAIALDPKTIQITRPERFSM
VEFLALVQEIPINYSAKNKIIVDEKSGTIVSGVDIMVHPIVVTSQDITLKITKEPLSD
SKNTQDLDNSMSLDTAHNTLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGA
ISAEMEIL"
misc_feature complement(259544..260569)
/gene="flgI"
/locus_tag="HPKB_0256"
/note="flagellar basal body P-ring protein; Provisional;
Region: flgI; PRK05303"
/db_xref="CDD:180004"
misc_feature complement(259547..260569)
/gene="flgI"
/locus_tag="HPKB_0256"
/note="flagellar basal body P-ring protein; Reviewed;
Region: flgI; cl14622"
/db_xref="CDD:187395"
gene 260758..262236
/locus_tag="HPKB_0257"
/db_xref="GeneID:12340668"
CDS 260758..262236
/locus_tag="HPKB_0257"
/note="Consensus COG by CONSORF: COG0513. Candidate starts
by CONSORF: 260740,260758"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase"
/protein_id="YP_005761785.1"
/db_xref="GI:384887274"
/db_xref="GeneID:12340668"
/translation="MEFNQEPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPS
PIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQ
ISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKF
VPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPI
KIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQF
LASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHL
PLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEIPTINENQ
IIKTLHDAKVSEAIISLYEQLTEIFEPSQLVLKLLSLQFETSKIGLNQQEIDAIQNPK
EKTPKPSNKKTHQHEQARSFKKGQHKDRHPKANHHSKKPKRR"
misc_feature 260758..262230
/locus_tag="HPKB_0257"
/note="Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis]; Region:
SrmB; COG0513"
/db_xref="CDD:30859"
misc_feature 260821..261417
/locus_tag="HPKB_0257"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:28928"
misc_feature 260956..260970
/locus_tag="HPKB_0257"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28928"
misc_feature 261259..261270
/locus_tag="HPKB_0257"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:28928"
misc_feature 261352..261360
/locus_tag="HPKB_0257"
/note="motif III; other site"
/db_xref="CDD:28928"
misc_feature 261448..261837
/locus_tag="HPKB_0257"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(261550..261561,261619..261624,261697..261705)
/locus_tag="HPKB_0257"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(261721..261723,261784..261786,261796..261798,
261805..261807)
/locus_tag="HPKB_0257"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 262257..263345
/locus_tag="HPKB_0258"
/db_xref="GeneID:12340669"
CDS 262257..263345
/locus_tag="HPKB_0258"
/note="Consensus COG by CONSORF: COG0330"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761786.1"
/db_xref="GI:384887275"
/db_xref="GeneID:12340669"
/translation="MPIDLNEHLKKKNSQKETPTPNTPNNGGRFIPPSNSFNSKKLSV
LIVIVLLGVIAFLAKPFEVISSGEIGIKITAGKYEPTPLQPGIHFFVPIIQDILIVDT
RIRNINFSRTEDMGVAGKNQGIFRNDAINVMDSRGLTVSIELTVQYRLNPQTTPQTIA
TYGLSWEQKIINPVVRDVVRSVVGRYPAEDLPIKRNEIAALINSGINKEVSKLPNTPV
ELSSIQLREIVLPAKIKEQIEKVQIARQESERVKYEVERSKQEAQKQAALAKGEADAN
RIKAQGVADAIVIEAKAKSQANLSISQSLSDKLLRLRQIEVQGQFNEALKTNNNAQIM
LTPGGAVPNIWIDTKSKVKSSIAETKEP"
misc_feature 262419..263288
/locus_tag="HPKB_0258"
/note="Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones]; Region: HflC; COG0330"
/db_xref="CDD:223407"
misc_feature 262443..263027
/locus_tag="HPKB_0258"
/note="SPFH domain / Band 7 family; Region: Band_7;
pfam01145"
/db_xref="CDD:216327"
gene 263352..263891
/locus_tag="HPKB_0259"
/db_xref="GeneID:12340670"
CDS 263352..263891
/locus_tag="HPKB_0259"
/note="Consensus COG by CONSORF: COG4147"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761787.1"
/db_xref="GI:384887276"
/db_xref="GeneID:12340670"
/translation="MASLAFIQAFLESFKGFLSQATLISVLIASVLILFCAILLLLAL
LLRNRLASYIAVAAFFGAFLSMPFVLKVLLTQAIYPIETRILHANPLSYSNAFSLQVG
VKNNSKFSLNKCVLRLEVLKNPHNFVEEHAFKLFVKKSYEKTFKEKILPEESKVFSFF
IDNYPYLKTAPYQVSLFCL"
misc_feature 263505..263888
/locus_tag="HPKB_0259"
/note="Protein of unknown function (DUF2393); Region:
DUF2393; pfam09624"
/db_xref="CDD:204274"
gene complement(263953..265503)
/locus_tag="HPKB_0260"
/db_xref="GeneID:12340671"
CDS complement(263953..265503)
/locus_tag="HPKB_0260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761788.1"
/db_xref="GI:384887277"
/db_xref="GeneID:12340671"
/translation="MLEIKNLNCVLNAHFSLQNINISLNPSERVAVVGESGSGKSSIA
NIIMRLNPRFKPHSGEILFETTNLLKESEELMQHLRGNAIAYIAQDPLSSLNPLHKIG
KQMSEAYFLHHKNASKTLLKEKVLNAMQQVQLDEKFLNRYPYELSGGQRQRVCIAMGI
INAPKLLICDEPTTALDAQIQNQILDLLKQLSAEKNIALLFISHDLKAVKRLADRVYV
LKKGEIVETNSTKELFNDPKHEYSKLLIQASNLPAKNLKALDETLLEVEDFSVYYLQK
RFFRPSLKKPLIASVNFSLKAKENIGIIGESGSGKSSLALGLLKLALNSGEEKILGQS
VGLLNSKAFKPYRKILQMVFQDPYASLNPRLSIQSILIEALHFAYPKASKKEWHHLAK
LCLEEVCLNPELLNFYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSV
LELLLDLQEKQDLSYLFISHDLDVIKAFCDKVLVISEGKVVEMGAIKEVFDNPKHAYT
KRLLESRL"
misc_feature complement(263959..265503)
/locus_tag="HPKB_0260"
/note="ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only]; Region: COG1123"
/db_xref="CDD:31320"
misc_feature complement(264820..265503)
/locus_tag="HPKB_0260"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(265381..265404)
/locus_tag="HPKB_0260"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(264892..264894,264991..264996,
265237..265239,265378..265386,265390..265395))
/locus_tag="HPKB_0260"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(265237..265248)
/locus_tag="HPKB_0260"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(265039..265068)
/locus_tag="HPKB_0260"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(264991..265008)
/locus_tag="HPKB_0260"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(264973..264984)
/locus_tag="HPKB_0260"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(264886..264906)
/locus_tag="HPKB_0260"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(<264760..264837)
/locus_tag="HPKB_0260"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
misc_feature complement(264022..264717)
/locus_tag="HPKB_0260"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(264568..264591)
/locus_tag="HPKB_0260"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(264094..264096,264193..264198,
264439..264441,264565..264573,264577..264582))
/locus_tag="HPKB_0260"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(264439..264450)
/locus_tag="HPKB_0260"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(264241..264270)
/locus_tag="HPKB_0260"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(264193..264210)
/locus_tag="HPKB_0260"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(264175..264186)
/locus_tag="HPKB_0260"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(264088..264108)
/locus_tag="HPKB_0260"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(<263962..264033)
/locus_tag="HPKB_0260"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene complement(265513..266535)
/locus_tag="HPKB_0261"
/db_xref="GeneID:12340672"
CDS complement(265513..266535)
/locus_tag="HPKB_0261"
/note="Consensus COG by CONSORF: COG4239"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_005761789.1"
/db_xref="GI:384887278"
/db_xref="GeneID:12340672"
/translation="MSVSSLFKMRILSFKKNKRAVFSLYLFIALLALSLLAPLWVNDR
PLFIYKDNKAYFPIFKNYAEVEFGGDFFTPTDYNDPYVENTLLKDAFIIHALIPYSYD
TIIMDLDSPAPTPPSFKHLLGTDDQARDVLARLVYGYRVSLVFGILLTLFSVLIGVSL
GAFQGYYGGLMDLVGQRLSEIWSAIPMLFLLIVISSAFNSNFWIILFLVLLFSWMGLS
QVVRTEFLKARNMDYTKAARALGVNDLKIIFYHVLPNALVATITYVPFLMAASISTLV
SLDFLGFGMPIGSASLGELVNQGKDNLTTPHLAIVAFVAISLLLSVLVFIGEGVRDAF
NANMLK"
misc_feature complement(265516..266535)
/locus_tag="HPKB_0261"
/note="ABC-type uncharacterized transport system, permease
component [General function prediction only]; Region:
COG4239"
/db_xref="CDD:33962"
misc_feature complement(265567..266121)
/locus_tag="HPKB_0261"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(265567..265572,265579..265584,
265591..265596,265600..265605,265612..265617,
265645..265650,265696..265701,265708..265719,
265738..265740,265747..265752,265792..265794,
265843..265845,265852..265857,265867..265869,
265873..265878,265885..265887,265891..265893,
265897..265902,265951..265953,265957..265962,
265969..265998,266002..266013,266041..266043,
266056..266061,266068..266073))
/locus_tag="HPKB_0261"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(265702..265719,265951..265995))
/locus_tag="HPKB_0261"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(265615..265617,265645..265647,
265654..265656,265699..265701,265915..265917,
265951..265953))
/locus_tag="HPKB_0261"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(265771..265773,265783..265788,
265804..265842))
/locus_tag="HPKB_0261"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(266640..266715)
/gene="trnA"
/locus_tag="HPKB_0262"
/db_xref="GeneID:12340673"
tRNA complement(266640..266715)
/gene="trnA"
/locus_tag="HPKB_0262"
/product="tRNA-Ala"
/db_xref="GeneID:12340673"
gene 266879..268321
/locus_tag="HPKB_0263"
/db_xref="GeneID:12340674"
CDS 266879..268321
/locus_tag="HPKB_0263"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005761790.1"
/db_xref="GI:384887279"
/db_xref="GeneID:12340674"
/translation="MKNHSFKKTIALSLLASMSLCNAEEDGAFFVIDYQTSLARQELK
NPGFTQAQELKQLIRDGAVRLQTSAIPLSYYLDILGNKTKTLLSESMKGNAQASQQNG
PSNQALVNLEQSLGILGKLLDLSQQYASQNIIKPLVVDVGKQQIGITDSMLSVAQNIV
LALGQVDLSKIQQNNNKQLYENIMKVMLLGTDGTNGAYNGVSVGDIATGMQNFSSQTG
LIGANSTVSEINALIKSGISLDRETLKLGSFIEKNICSNASSCFSGSQLIYKKGLDRV
IGIINTTLNQFESSASSLYKISYIPNLFSLRDYQSASMNGFGAKMGYKQFFTHKKNIG
LRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTAIGLFFGAQI
AGQTWSTNVTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFNKHKLDQGIEFGVKIP
VIAHKYFATQGSSASYMRNFSFYVGYSVGF"
misc_feature 267830..268318
/locus_tag="HPKB_0263"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 268334..269752
/gene="omp26"
/locus_tag="HPKB_0264"
/db_xref="GeneID:12340675"
CDS 268334..269752
/gene="omp26"
/locus_tag="HPKB_0264"
/note="Consensus COG by CONSORF: COG1066. Candidate starts
by CONSORF: 268331,268334"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005761791.1"
/db_xref="GI:384887280"
/db_xref="GeneID:12340675"
/translation="MKNTNTKEIKNTRMKKGYSQYHALKKGLLKTALLFSLPLSMALA
EDNGFYMGVGYQIGGAQQNINNKGSTLRNNVIDDFRQVGVGMAGSNGLLALATNTTMD
ALLGIGNQIINTNTTVGNNNAELTQFKKILPQIEQRFETNKNAYSVQALQVYLSNVLY
NLVNNSNNGGNNGVVPEYVGIIKVLYGSQNEFSLLATESVALLNALTRVNLDSNSVFL
KGLLAQMQLFNDTSSAKLGQIAESLNNSGGAGSMLQKDVKTISDRIATYQENLKQLGG
MLNHYDEPYLPQFGPGKSSQHGVINGFGIQMGYKQFFGNKRNIGLRYYAFFDYGFTQL
GSLSSAVKANIFTYGAGTDFLWNIFRRVFSDQSLNVGVFGGIQIAGNTWDSSLRGQIE
NSFKEYPTPTNFQFLFNLGLRAHFASTMHRRFLSASQSIQHGMEFGVKIPAINQRYLK
ANGADVDYRRLYAFYINYTIGF"
misc_feature 269243..269749
/gene="omp26"
/locus_tag="HPKB_0264"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 269850..271085
/gene="purA"
/locus_tag="HPKB_0265"
/db_xref="GeneID:12340676"
CDS 269850..271085
/gene="purA"
/locus_tag="HPKB_0265"
/note="Consensus COG by CONSORF: COG0104"
/codon_start=1
/transl_table=11
/product="adenylosuccinate synthetase"
/protein_id="YP_005761792.1"
/db_xref="GI:384887281"
/db_xref="GeneID:12340676"
/translation="MADVVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVH
KGVKHSLHLMPSGVLYPQCKNIISSAVVVSIKDLCEEISAFEDLENRLFISDRAHVIL
PYHAKKDAFKEQSQNIGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEERLNAHFKAI
EPFKEAYDLGEDYEKDLREYFKTYAPKICPFIKDTTSMLIEANQKGEKILLEGAQGTL
LDIDLGTYPFVTSSNTTSASACVSTGLNPKAINEVIGITKAYCTRVGNGPFPSEDTTP
MGDHLRTKGTEFGTTTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKV
CVAYERKGERLEAFPSDLKDCAPIYQTFKGWEKSVGVRKLDDLEPNAREYIRFIEKEV
GVKIRLISTSPEREDTIFL"
misc_feature 269853..271079
/gene="purA"
/locus_tag="HPKB_0265"
/note="Adenylosuccinate synthetase; Region:
Adenylsucc_synt; smart00788"
/db_xref="CDD:197875"
misc_feature 269853..271058
/gene="purA"
/locus_tag="HPKB_0265"
/note="Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the...; Region: AdSS;
cd03108"
/db_xref="CDD:73337"
misc_feature order(269883..269885,269889..269897,269964..269972,
269976..269978,270813..270815,270819..270821,
271053..271058)
/gene="purA"
/locus_tag="HPKB_0265"
/note="GDP-binding site [chemical binding]; other site"
/db_xref="CDD:73337"
misc_feature order(269889..269891,269898..269900,269967..269969)
/gene="purA"
/locus_tag="HPKB_0265"
/note="ACT binding site; other site"
/db_xref="CDD:73337"
misc_feature order(269958..269960,270201..270203,270210..270212,
270492..270494,270537..270539)
/gene="purA"
/locus_tag="HPKB_0265"
/note="IMP binding site; other site"
/db_xref="CDD:73337"
gene 271082..271510
/locus_tag="HPKB_0266"
/db_xref="GeneID:12340677"
CDS 271082..271510
/locus_tag="HPKB_0266"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761793.1"
/db_xref="GI:384887282"
/db_xref="GeneID:12340677"
/translation="MKKFASVLVQLKTLALEKIEQKLESKRLEWRQNEREILDKQAQL
SAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESENLIKDLKILEKEYFLANQELEK
AKIILENEKRKEKEILEKKEQAFLDENAMILHWQKEGLHA"
misc_feature 271130..271480
/locus_tag="HPKB_0266"
/note="Flagellar FliJ protein; Region: FliJ; pfam02050"
/db_xref="CDD:202101"
gene 271503..272144
/locus_tag="HPKB_0267"
/db_xref="GeneID:12340678"
CDS 271503..272144
/locus_tag="HPKB_0267"
/note="Consensus COG by CONSORF: COG3334"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761794.1"
/db_xref="GI:384887283"
/db_xref="GeneID:12340678"
/translation="MRKILLMGLILQALFGEEAAQELLQCSAIFESKKAELKDDLRRL
SEKEQSLRILQTENARLLDEKNDLLNKKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLK
NLIEENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELG
KILAKMDPKKAAALSELWQKPPRENKESPKTIPPTPPKEPMIKDPNTKEPAGV"
misc_feature 271503..272057
/locus_tag="HPKB_0267"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3334"
/db_xref="CDD:33143"
gene 272141..273190
/locus_tag="HPKB_0268"
/db_xref="GeneID:12340679"
CDS 272141..273190
/locus_tag="HPKB_0268"
/note="Consensus COG by CONSORF: COG0750"
/codon_start=1
/transl_table=11
/product="zinc metalloprotease"
/protein_id="YP_005761795.1"
/db_xref="GI:384887284"
/db_xref="GeneID:12340679"
/translation="MMFIVAVLMLAFLIFVHELGHFTIARICGVKVEVFSIGFGKKLC
FFKLFGTQFALSLIPLGGYVKLKGMDKEENETNESANDSYAQKSPFQKLWILFGGAFF
NFLFAILVYFFLALGGEKVLLPVIGDLEKNALEAGLLKGDKILSINHKKIASFREIRS
VVAHARGELVLEIERNHQILEKRLTPKIVAVISDSNDPNEIIKYKVIGIKPDMQKTGV
VSYSLFQAFEKALSRFKEGVVLIADSLRRLITGSASVKELSGVVGIVGALSHADSLSM
LLLFGAFLSINLGILNLLPIPALDGAQMLGVVFKNIFKITLPAFVQNALWLAGVGFLV
FIMFLGLFNDLTRLL"
misc_feature 272144..273184
/locus_tag="HPKB_0268"
/note="RIP metalloprotease RseP; Region: TIGR00054"
/db_xref="CDD:161683"
misc_feature 272147..>272482
/locus_tag="HPKB_0268"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature order(272189..272194,272201..272203)
/locus_tag="HPKB_0268"
/note="active site"
/db_xref="CDD:100084"
misc_feature 272471..272698
/locus_tag="HPKB_0268"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature order(272474..272485,272489..272491,272612..272617,
272624..272626)
/locus_tag="HPKB_0268"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29046"
misc_feature <272960..273181
/locus_tag="HPKB_0268"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:209123"
misc_feature 273014..273025
/locus_tag="HPKB_0268"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene 273203..274465
/gene="xseA"
/locus_tag="HPKB_0269"
/db_xref="GeneID:12340680"
CDS 273203..274465
/gene="xseA"
/locus_tag="HPKB_0269"
/note="Consensus COG by CONSORF: COG1570"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease VII large subunit"
/protein_id="YP_005761796.1"
/db_xref="GI:384887285"
/db_xref="GeneID:12340680"
/translation="MDVLSVSEINAQIKALLEATFLQVRVQGEVSNLTIHKVSGHAYF
SLKDSQSVIRCVLFKGNANRLKFALKEGQEVVVFGGISAYVPRGDYQINCFEIEPKDI
GSLTLALEQLKEKLRLKGYFDKANKLPKPHFPKRVAVITSQNSAAWADMQKIASKRWP
MCELVCINALMQGEGCVQSVVESIAYADSFHGTKNAFDAIVMARGGGSMEDLYSFNDE
KIADALHLAKTFSMSAIGHESDFLLSDLVADLRASTPSNAMEILLPSSDEWRQRLDGF
NVKLHRSFKILLHQKKAHLEHLEASLKRLSFENKHHLNALKLEKLKIALENKTLEFLR
FKKALLEKISTQTLTSPFLQTKTERLNRLENALKLAHANLKLPQFGAFVSKNNQAIGL
EALKRGDKIELSDEKARASAEILSVDRV"
misc_feature 273215..274462
/gene="xseA"
/locus_tag="HPKB_0269"
/note="exodeoxyribonuclease VII, large subunit; Region:
xseA; TIGR00237"
/db_xref="CDD:161783"
misc_feature 273269..273499
/gene="xseA"
/locus_tag="HPKB_0269"
/note="ExoVII_LU_OBF: A subfamily of OB folds
corresponding to the N-terminal OB-fold domain of
Escherichia coli exodeoxyribonuclease VII (ExoVII) large
subunit. E. coli ExoVII is composed of two non-identical
subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF;
cd04489"
/db_xref="CDD:72961"
misc_feature order(273275..273277,273422..273424,273428..273430,
273434..273436,273494..273496)
/gene="xseA"
/locus_tag="HPKB_0269"
/note="generic binding surface II; other site"
/db_xref="CDD:72961"
misc_feature order(273290..273298,273329..273340,273344..273346,
273362..273370,273374..273376,273419..273421,
273440..273448,273473..273481)
/gene="xseA"
/locus_tag="HPKB_0269"
/note="generic binding surface I; other site"
/db_xref="CDD:72961"
gene complement(274504..274872)
/locus_tag="HPKB_0270"
/note="partial gene fragment"
/pseudo
/db_xref="GeneID:12340681"
gene complement(274970..275683)
/locus_tag="HPKB_0271"
/db_xref="GeneID:12340682"
CDS complement(274970..275683)
/locus_tag="HPKB_0271"
/note="Consensus COG by CONSORF: COG2189"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761797.1"
/db_xref="GI:384887286"
/db_xref="GeneID:12340682"
/translation="MVIFLGKTILHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSS
NFEYEDAHADYEKWIEEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGTCNFL
GTFITKQATRSNAKHINITHEYVLSYAKNKAFAPGFKILRTLLPIYAKPLKDLMRTIK
NVFKQKGQAQAQLVLKKQIKELSQKEHFNFLKNYNLVDEKGEIYFAKDLSTPSNPRSV
AIQEINLFFRTPKKQRVEQ"
misc_feature complement(<275288..>275611)
/locus_tag="HPKB_0271"
/note="Adenine specific DNA methylase Mod [DNA
replication, recombination, and repair]; Region: COG2189"
/db_xref="CDD:32372"
misc_feature complement(<275276..275596)
/locus_tag="HPKB_0271"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(275649..276263)
/locus_tag="HPKB_0272"
/db_xref="GeneID:12340683"
CDS complement(275649..276263)
/locus_tag="HPKB_0272"
/note="Consensus COG by CONSORF: COG1307"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761798.1"
/db_xref="GI:384887287"
/db_xref="GeneID:12340683"
/translation="MRFLNQSLGFFNKGRFEPIDRNFITESYQALKPIEEIQNKYNKH
DNDSFLNELRDSMVALYLDYELINIQKHGLDAKRSSSDEFLETKQVSFQSKTWSATFN
DTTLEKAKVFCDVKTTLAVGVWNNISNLLFIVYGKHPEIVLYLEQKVKECHNESRRST
QTIGVSKLIKEFDFKMKPIDLKEQELINLFNLKFGHFSWENHLA"
gene 276647..277138
/locus_tag="HPKB_0273"
/db_xref="GeneID:12340684"
CDS 276647..277138
/locus_tag="HPKB_0273"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761799.1"
/db_xref="GI:384887288"
/db_xref="GeneID:12340684"
/translation="MLEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKWALL
VYFGEYSVLPDGDIVLYQTNKDNVKILVILSVKNSFRERFTETPYWKLKLLQSPVTSH
IKVFMITPDNDDEISFKDRPKKARIVMEHELDGLYLAKSHFDQSSKIKGIENLLEDLK
RLL"
gene 277135..277893
/gene="hpaim"
/locus_tag="HPKB_0274"
/db_xref="GeneID:12340685"
CDS 277135..277893
/gene="hpaim"
/locus_tag="HPKB_0274"
/note="Consensus COG by CONSORF: COG0863"
/codon_start=1
/transl_table=11
/product="DNA modification methylase"
/protein_id="YP_005761800.1"
/db_xref="GI:384887289"
/db_xref="GeneID:12340685"
/translation="MKPYFSLEKLDLYHGDASVLETFEKGFYDLCVTSPPYNLSIEYQ
GSNDFRAYDDYLNWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKE
CGWKYQNTIIWNESNISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTIS
KEEFLLYTNGLWSFSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTI
LEANALGRFSVGLEIEKEYCELSKKRILESLSLV"
misc_feature 277168..277884
/gene="hpaim"
/locus_tag="HPKB_0274"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature 277219..277863
/gene="hpaim"
/locus_tag="HPKB_0274"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene 277965..280535
/gene="clpB"
/locus_tag="HPKB_0275"
/db_xref="GeneID:12340686"
CDS 277965..280535
/gene="clpB"
/locus_tag="HPKB_0275"
/note="Consensus COG by CONSORF: COG0542. Candidate starts
by CONSORF: 277959,277965"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease, ATP-binding subunit
ClpB"
/protein_id="YP_005761801.1"
/db_xref="GI:384887290"
/db_xref="GeneID:12340686"
/translation="MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQ
GILIQALQKMSVDIQALRLSVQSELNKFAKVSQINKQNIQLNQALIQSLENAQGLMAK
TGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLEALRKGATIQDKNDDSNWESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLA
QRIVNKEVPKTLLNKRVVALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDE
IHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKDMALQRRFQPIL
LNEPSINEALQILRGLKETLETHHNITINDSALVASAKLSSRYITDRFLPDKAIDLID
EGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKE
EKIQLEAQFENEKEVFREISRLKMETESLKKEAERFKRNGDYQQAGEIEYSKIPENKK
KEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESEL
QKRVVGQEKAIKAIAKAIKRNKAGLSDNNKPIGSFLFLGPTGVGKTESAKALAQFLFD
SDKNLIRIDMSEYMEKHAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKA
HPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGTLLEENLSEADKQKAIK
ESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEEAK
ELIAKAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK
"
misc_feature 277983..280520
/gene="clpB"
/locus_tag="HPKB_0275"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:163223"
misc_feature 278016..278174
/gene="clpB"
/locus_tag="HPKB_0275"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 278499..278966
/gene="clpB"
/locus_tag="HPKB_0275"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 278574..278597
/gene="clpB"
/locus_tag="HPKB_0275"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(278577..278600,278787..278789,278898..278900)
/gene="clpB"
/locus_tag="HPKB_0275"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 278775..278792
/gene="clpB"
/locus_tag="HPKB_0275"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 278949..278951
/gene="clpB"
/locus_tag="HPKB_0275"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 279747..280154
/gene="clpB"
/locus_tag="HPKB_0275"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 279777..279800
/gene="clpB"
/locus_tag="HPKB_0275"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(279780..279803,279993..279995,280119..280121)
/gene="clpB"
/locus_tag="HPKB_0275"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 279981..279998
/gene="clpB"
/locus_tag="HPKB_0275"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 280254..280490
/gene="clpB"
/locus_tag="HPKB_0275"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene 280591..281310
/locus_tag="HPKB_0276"
/db_xref="GeneID:12340687"
CDS 280591..281310
/locus_tag="HPKB_0276"
/note="Consensus COG by CONSORF: COG0785. Candidate starts
by CONSORF: 280588,280591"
/codon_start=1
/transl_table=11
/product="cytochrome c biogenesis protein"
/protein_id="YP_005761802.1"
/db_xref="GI:384887291"
/db_xref="GeneID:12340687"
/translation="MFDNTLVNLFDTAPLLTSLLAGILTFLSPCVLPLIPAYMSYISQ
ISLEDIKDGKAKRVSVFLKSLMFVVGFSFVFLGVGMSMAKLIHSFSFSWVNYIAGGIV
ILFGLHFLGVFRFAFLYKTQSVRLASKSNSMQRFYPFLLGMSFALGWTPCIGPIFTSI
VIMSASKDAYGLMLMVVFVMGLAIPFLLVALMLERALLFLKSLKKYNRAIEIVSGLVL
ILMGILIMTNSLESLTNFLQK"
misc_feature 280642..281223
/locus_tag="HPKB_0276"
/note="Cytochrome C biogenesis protein transmembrane
region; Region: DsbD; pfam02683"
/db_xref="CDD:111569"
gene 281439..282455
/locus_tag="HPKB_0277"
/db_xref="GeneID:12340688"
CDS 281439..282455
/locus_tag="HPKB_0277"
/note="Consensus COG by CONSORF: COG0044. Candidate starts
by CONSORF: 281439,281463,281484,281499,281595,281718"
/codon_start=1
/transl_table=11
/product="dihydroorotase"
/protein_id="YP_005761803.1"
/db_xref="GI:384887292"
/db_xref="GeneID:12340688"
/translation="MIECRDLFVLPSFIDLSVTGLEGYENLKQKAFKGGVGLLNVFNC
DQSGVKNIMALKNNQLADIATLKNKGGEILIAQSDAFLELISHYAKSYNLPLLISLEN
SFEALNSGELAYELGQNFVENAFENMRLVRFMEVSRALQIPMLLDKVSSIATLKLIKA
FNDLGAKLQAQTPLSHLILDESVYEDYEPRFKIAPPLRDKESQNALKEALKNDEIAML
TSLHVFKNSNAELFEESAFGCESIENAFSVAYTFLVQKKVISFPQLIKVMATNQARFL
KLNAGEVKENQLANLMIVDLNAQTRVNNKNSPFYGLELYGEVQRMILKGQTTLIKENA
CKKS"
misc_feature 281442..282419
/locus_tag="HPKB_0277"
/note="dihydroorotase; Provisional; Region: PRK08417"
/db_xref="CDD:181418"
misc_feature 281442..282392
/locus_tag="HPKB_0277"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature order(281487..281489,281493..281495,281733..281735,
281880..281882,282099..282101)
/locus_tag="HPKB_0277"
/note="active site"
/db_xref="CDD:30035"
gene 282440..283669
/locus_tag="HPKB_0278"
/db_xref="GeneID:12340689"
CDS 282440..283669
/locus_tag="HPKB_0278"
/note="Consensus COG by CONSORF: COG0402"
/codon_start=1
/transl_table=11
/product="chlorohydrolase"
/protein_id="YP_005761804.1"
/db_xref="GI:384887293"
/db_xref="GeneID:12340689"
/translation="MQEIIGASLVFLCNEKCEVLEDYGVVFDEKIVEAGDYKSLTLKY
PHLKAQFFENSVLLPAFINAHTHFEFSNNKASFDYGSFSGWLGSVLNNGGAILENCQG
AIQNAIITQLKSGVGSVGAISNHLIEVNLLKESPLSAVVFLEFLGSRYSLEKLKAFEA
KFKELKDLEDKKLKAALAVHAPYSVQKDMALSVIQLAKDSQSLLSTHFLESFEELEWV
ENSKGWFENFYQHFLKESHFKSLYKGANDYIDMFKDTHTLFVHNQFASLEALKRIKSQ
VKNAFLITCPFSNRLLSGQALDLERTKEAGLSVSVATDGLSSNISLSLLDELRAFLLT
HNMPLLKLAKIALLGATRHGAKALALNNGEIEANKRADLSVFSFGEKFIKEQAILQFL
LHAKEVERLFLGGKRVI"
misc_feature 282443..283666
/locus_tag="HPKB_0278"
/note="chlorohydrolase; Provisional; Region: PRK08418"
/db_xref="CDD:181419"
misc_feature 282524..283657
/locus_tag="HPKB_0278"
/note="Metallo-dependent hydrolases, subgroup D is part of
the superfamily of metallo-dependent hydrolases, a large
group of proteins that show conservation in their
3-dimensional fold (TIM barrel) and in details of their
active site. The vast majority of the...; Region:
Met_dep_hydrolase_D; cd01312"
/db_xref="CDD:30055"
misc_feature order(282632..282634,282638..282640,283058..283060,
283220..283222,283379..283381)
/locus_tag="HPKB_0278"
/note="active site"
/db_xref="CDD:30055"
gene 283730..283972
/locus_tag="HPKB_0279"
/db_xref="GeneID:12340690"
CDS 283730..283972
/locus_tag="HPKB_0279"
/note="Candidate starts by CONSORF: 283697,283730"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761805.1"
/db_xref="GI:384887294"
/db_xref="GeneID:12340690"
/translation="MKLVLAKNTRKSDAKSVELEDLYHKFSEDKRSIFYFAPTNAHKD
MLKVVDFFKEKGHTAYLDEVKVSSDEKDFLYELHII"
gene 283982..285295
/locus_tag="HPKB_0280"
/db_xref="GeneID:12340691"
CDS 283982..285295
/locus_tag="HPKB_0280"
/note="Consensus COG by CONSORF: COG0621"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761806.1"
/db_xref="GI:384887295"
/db_xref="GeneID:12340691"
/translation="MKVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILIN
TCSVREKPERKLFSEIGQFAKIKKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARN
VSKISQVIHKEKAVEVAIDYDESAYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHT
RGKEISIPMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLS
EIQGIERIRFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKE
WFLNRVERLKALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRP
FTEAGAWKERVPLEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIV
GFEGRSDTGKFIEVACKEKRNPGELVRVEIVSHSKGRLIATAKGD"
misc_feature 283985..284278
/locus_tag="HPKB_0280"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature 284015..285289
/locus_tag="HPKB_0280"
/note="(dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional; Region: PRK14339"
/db_xref="CDD:184634"
misc_feature 284405..284995
/locus_tag="HPKB_0280"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(284423..284425,284429..284431,284435..284437,
284441..284449,284549..284551,284588..284593,
284666..284674,284744..284746,284876..284878,
284966..284971)
/locus_tag="HPKB_0280"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 285335..285988
/locus_tag="HPKB_0281"
/db_xref="GeneID:12340692"
CDS 285335..285988
/locus_tag="HPKB_0281"
/note="Consensus COG by CONSORF: COG2121"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761807.1"
/db_xref="GI:384887296"
/db_xref="GeneID:12340692"
/translation="MSLKFFRKNIVLKVVPRLAFGVLWLLHKTCKNRYFLAQNLKEKP
FIVSCWHGELGMIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGG
VKVLIEGLKRLKEGCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWR
LNTWDQFEIPKPFSEVYYYMLESVIIPKEWELSKAKEYLKTRMDSVGFEESQRGLGA"
misc_feature 285401..285946
/locus_tag="HPKB_0281"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: DUF374; Region:
LPLAT_DUF374-like; cd07983"
/db_xref="CDD:153245"
misc_feature order(285485..285487,285494..285496,285500..285502,
285551..285562,285707..285715)
/locus_tag="HPKB_0281"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153245"
gene 285981..286961
/locus_tag="HPKB_0282"
/db_xref="GeneID:12340693"
CDS 285981..286961
/locus_tag="HPKB_0282"
/note="Candidate starts by CONSORF: 285951,285957,285981"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761808.1"
/db_xref="GI:384887297"
/db_xref="GeneID:12340693"
/translation="MLKGLKKAFKERFCSQVYISFNVDHNLLSAQILRIKNHRIKEKF
FKTFETKVETKNGEVPIQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKREN
QDYRACEVNQKYCVYVESKDFLKDFKRFKIQDVDFLFSPFSLIYDFVHDNLEEKPLLY
LLLERSRFYFLIADKKEIFLAKSVFLEEQPEEFIESKEEDSMEMDNEAVNLFLSEIQE
DIDSLEEAIGLDSSKDNSEKNEDAYSLIEGMTNIPLIAGVLQEGLRSVYHSRDIDFVE
KVVVLDSCQIHQKALMHLQETLMIEVDRIDFSLVERLNILARMENEKHAF"
gene 286951..287484
/locus_tag="HPKB_0283"
/db_xref="GeneID:12340694"
CDS 286951..287484
/locus_tag="HPKB_0283"
/note="Candidate starts by CONSORF: 286942,286951"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761809.1"
/db_xref="GI:384887298"
/db_xref="GeneID:12340694"
/translation="MRFSYIEPRAKYLISKLSKIWVFYIFLSFVVIGGLVWFMHNAIK
NTQNNVSDLTIQERLYRHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIV
PDLITINSIEIDQQSVVVSGKTPSKEAFYFLFQNKLNPIFDYSRAEFFPLSDGWFNFV
STNFSNSLLIKNPESIK"
gene 287481..288020
/locus_tag="HPKB_0284"
/db_xref="GeneID:12340695"
CDS 287481..288020
/locus_tag="HPKB_0284"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761810.1"
/db_xref="GI:384887299"
/db_xref="GeneID:12340695"
/translation="MKPLHFSHLDREQSGDVGFIIKNLIFLGVFSLFGWLNTEYFLWP
SMLELKKILLEENRKKSVLEYAQRHFETALTNYRNQKETGESLLKIFNDEESRRILEK
ILKKCFDAYKIKPLFSQNPFQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLK
ISKDDEGLLVQFSVSIDLQ"
gene 288036..288434
/locus_tag="HPKB_0285"
/db_xref="GeneID:12340696"
CDS 288036..288434
/locus_tag="HPKB_0285"
/note="Consensus COG by CONSORF: COG0727"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761811.1"
/db_xref="GI:384887300"
/db_xref="GeneID:12340696"
/translation="MQDFDFSFNHKACEGCGAKCCVGESGYIFLNIQEMQKISAFLKL
ELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWE
SVKTFSKEQKEAFCQSCPGITQKTKETKVR"
misc_feature 288069..288395
/locus_tag="HPKB_0285"
/note="Flagellin N-methylase; Region: FliB; pfam03692"
/db_xref="CDD:112504"
gene 288471..289763
/locus_tag="HPKB_0286"
/db_xref="GeneID:12340697"
CDS 288471..289763
/locus_tag="HPKB_0286"
/note="Consensus COG by CONSORF: COG0457"
/codon_start=1
/transl_table=11
/product="ATP-dependent nuclease"
/protein_id="YP_005761812.1"
/db_xref="GI:384887301"
/db_xref="GeneID:12340697"
/translation="MDIQIKKKFLASLLLFSMFCLKAETLSEDHQILLSSDAFHRGDF
ASAQKGYMNLYKQTNKVVYAKEAAISAASLGDIKTAMHLAMLYQKITNNRNDVSINKI
LVDGYAQMGQIDKAIELLHKIRKEEKTIATDNVLGTLYLTQKRLDKAFPLLNKFYNQV
HDEDSLEKLITIYFLQNRKKEGLDLLQSHIDRYGCSEQLCQKALNTFTQFNELDLAKT
TFARLYEKNPIVQNAQFYIGVLILLKEFDKAQQIAELFPFDRRLLLDLYTAQKKFAQA
SKQASLIYQEKKDPKFLGLEAIYHYESLSAKNKKLTKQEMLPIIQKLEQATKERQQIL
AKTKDKEDAQDAFFYNFLGYSLIDYDLDIKRGMDFVRKALALDSGSVLYLDSLAWGYY
KLGNCLEAKKIFSSIAKESIQAEPELKEHNKIIQECKK"
gene 289751..290308
/locus_tag="HPKB_0287"
/db_xref="GeneID:12340698"
CDS 289751..290308
/locus_tag="HPKB_0287"
/note="Consensus COG by CONSORF: COG0134"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761813.1"
/db_xref="GI:384887302"
/db_xref="GeneID:12340698"
/translation="MQEIRILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRVIPQIK
DCVFVTPDEVLGKLLEENTRTECVIVNFKGLYEIGAPSVFDLEVLGLLRRHASSLIVH
QDLFISHYQLLESLVQGSDGVILDEELLKEDLKGMVEFAWRLGLSVFVETHKKDYTHL
KDLGVLGVLEKVPHSQNQKKIVFLD"
gene 290364..290615
/locus_tag="HPKB_0288"
/db_xref="GeneID:12340699"
CDS 290364..290615
/locus_tag="HPKB_0288"
/note="Consensus COG by CONSORF: COG1145"
/codon_start=1
/transl_table=11
/product="ferrodoxin"
/protein_id="YP_005761814.1"
/db_xref="GI:384887303"
/db_xref="GeneID:12340699"
/translation="MSLLVNDECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGY
DDEPRCVSVCPVDAILPDPNNAESKEELKYKYESLKEQD"
misc_feature 290388..290534
/locus_tag="HPKB_0288"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
gene 290625..292079
/gene="ppx"
/locus_tag="HPKB_0289"
/db_xref="GeneID:12340700"
CDS 290625..292079
/gene="ppx"
/locus_tag="HPKB_0289"
/note="Consensus COG by CONSORF: COG0248"
/codon_start=1
/transl_table=11
/product="guanosine pentaphosphate phosphohydrolase"
/protein_id="YP_005761815.1"
/db_xref="GI:384887304"
/db_xref="GeneID:12340700"
/translation="MAKITTVIDIGSNSVRLAIFKKTSQFGFYLLFETKSRVRISEGC
YAFDGILQEIPMQRAIKALSEFKEIALKYKSKKILCVATSAVRDAPNRLEFVARVKKA
CGLQIKIIDGQKEALYGGIACANLLHKNSGITIDIGGGSTECALIEKGKIKDLISLDV
GTIRIKEMFLDKDLDVKTAKAFIQKEVSKLPFKHKNAFGVGGTIRALSKVLMKRFDYP
IDSLHGYEIDAHKNLAFIEKIVALKEDQLRLLGVNEERLDSIRSGALILLVVLEHLKT
SLMITSGVGVREGVFLSDLLRHHYHKFPPNINPSLISLKDRFLPHEKHSQKVKKECVK
LFEALSPLHKIDEKYLFHLKIAGELASMGKILSVYLAHKHSAYFILNALNYGFSHQDR
AIICLLAQFSHKKIPKDNAIAHMSAMMPSLLTLQWLSFILSLAENLCLTDSHHLKYTL
EKNKLVIHSNDTLYLAKEMLPKLVKPIPLMIEFA"
misc_feature 290625..292073
/gene="ppx"
/locus_tag="HPKB_0289"
/note="Exopolyphosphatase [Nucleotide transport and
metabolism / Inorganic ion transport and metabolism];
Region: GppA; COG0248"
/db_xref="CDD:30597"
misc_feature 290676..291518
/gene="ppx"
/locus_tag="HPKB_0289"
/note="Ppx/GppA phosphatase family; Region: Ppx-GppA;
pfam02541"
/db_xref="CDD:202276"
gene 292076..293092
/locus_tag="HPKB_0290"
/db_xref="GeneID:12340701"
CDS 292076..293092
/locus_tag="HPKB_0290"
/note="Consensus COG by CONSORF: COG0859"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide heptosyltransferase-1"
/protein_id="YP_005761816.1"
/db_xref="GI:384887305"
/db_xref="GeneID:12340701"
/translation="MNIAIVRLSALGDIIVSAVFLALIKERFANAQIEWFVDERFGAI
LEHSPYIDKLHPIALKSTLTTFNPLKIFKLFKSLRAYEYDIVIDMQGLIKSALITQML
KAPKKVGFDYASAREGLSAFFYSQKVSIAYNEPVLKRNFTLLSHALNLPQKEISEGLS
SRSKVFSYQDSPKIDALNLNQNKPKILFVLETSKINKTYPIERFKELALMLENFQICL
LWHADEHKANALYDALKNQHDVLLLPKLTLNEVKALLFKMDLIIGGDTGITHLAWALQ
KPSITLYGNTPMERFKLESPINVSLTGNSNANYHKKDFSIQNIEPKKIKECVLNILKE
KNDL"
misc_feature 292079..292948
/locus_tag="HPKB_0290"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature 292286..293047
/locus_tag="HPKB_0290"
/note="Glycosyltransferase family 9 (heptosyltransferase);
Region: Glyco_transf_9; pfam01075"
/db_xref="CDD:110100"
misc_feature order(292637..292642,292730..292732,292826..292831,
292865..292867,292874..292879,292886..292888)
/locus_tag="HPKB_0290"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene 293082..294068
/locus_tag="HPKB_0291"
/db_xref="GeneID:12340702"
CDS 293082..294068
/locus_tag="HPKB_0291"
/note="Consensus COG by CONSORF: COG1560"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis lauroyl acyltransferase"
/protein_id="YP_005761817.1"
/db_xref="GI:384887306"
/db_xref="GeneID:12340702"
/translation="MTYKERLIHEKILNQGDRGLKTELRILSIFIVESLVNILGFILA
KMPHSWFLRCIKAVAWLMKTFDKRRYFDAKANLDFVFGDSKSEEEKKRIIKKGYENFA
FILLETIRVIFIPKDEYDARFTLINEENVWKSLNKEGQAITLCMHFGYWEAVGTTLAQ
YYKDYGRGCLGRLTKFAPINHMIMSRREAFGVRFVNKVGAMKELIKMYNQGNGLVGIL
VDQNVAPKDGVVVKFFNKDATHTTIASVLSRRYNIDIQPVFIDFNDDYSHYTATYYPS
IRSKITDNAQNDILECTQAQASLCEEVIRNHPESYFWFHRRFKSTHPEIYQR"
misc_feature 293130..294041
/locus_tag="HPKB_0291"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature 293439..294038
/locus_tag="HPKB_0291"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature order(293520..293522,293529..293531,293535..293537,
293592..293603,293742..293750)
/locus_tag="HPKB_0291"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene complement(294129..295244)
/gene="tgt"
/locus_tag="HPKB_0292"
/db_xref="GeneID:12340703"
CDS complement(294129..295244)
/gene="tgt"
/locus_tag="HPKB_0292"
/note="Consensus COG by CONSORF: COG0343"
/codon_start=1
/transl_table=11
/product="queuine tRNA-ribosyltransferase"
/protein_id="YP_005761818.1"
/db_xref="GI:384887307"
/db_xref="GeneID:12340703"
/translation="MDFQLQATDNNARAGLLNLAHSQVATPVFMPVGTQGCIKSLDAT
DMQDILGAKLILANTYHMYLRPGEKVVEELGGLHRFAQFHGSFLTDSGGFQAFSLSDN
VKLQEDGIVFKSHIDGSKHLFTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESI
KRSAKWANLSLEYHKQKNRPNNNLFAIIQGGTHLKMRSLSVGLTHGGFDGYAIGGLAV
GESADEMLETIAHTAPLLPKDKPRYLMGVGTPENILDAIGLGVDMFDCVMPTRNARNA
TLFTHSGKISIKNAPYKLDNTPIDENCTCYTCKRHSKAYLHHLFRAKELAYARLASLH
NLHFYLELVKNARNAILEKRFLSFKKEFLEEYHSRSH"
misc_feature complement(294150..295244)
/gene="tgt"
/locus_tag="HPKB_0292"
/note="queuine tRNA-ribosyltransferase; Provisional;
Region: tgt; PRK00112"
/db_xref="CDD:178873"
misc_feature complement(294132..295238)
/gene="tgt"
/locus_tag="HPKB_0292"
/note="tRNA-guanine transglycosylases, various
specificities; Region: tgt_general; TIGR00449"
/db_xref="CDD:129541"
gene 295301..296737
/locus_tag="HPKB_0293"
/db_xref="GeneID:12340704"
CDS 295301..296737
/locus_tag="HPKB_0293"
/note="Consensus COG by CONSORF: COG3400. Candidate starts
by CONSORF: 295295,295301"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761819.1"
/db_xref="GI:384887308"
/db_xref="GeneID:12340704"
/translation="MKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNY
PSTFAFHCFDATSSFRLLQVLNDEVSDAFLIIQDFKEQHIIHKIIQTHFKRMRVVLSV
KRDGEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDV
PFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVY
LQVKSNVGQFPAPFGKSIYLYIDMRLQSRKAMMRDVYQALFLHKHLKSFKLYIQVLHP
TSPKFYHKFLALETESIEVNFDFYGKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKA
LYKTATPVYKTNTSGLSKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDP
NKRYKNEIVNHYENLANTLNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTR
FWWFLSTKVEKLAFLNDDNPQIFIPIAE"
misc_feature 295301..296731
/locus_tag="HPKB_0293"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3400"
/db_xref="CDD:33207"
misc_feature 295763..295954
/locus_tag="HPKB_0293"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:202105"
gene 296742..297773
/gene="aroB"
/locus_tag="HPKB_0294"
/db_xref="GeneID:12340705"
CDS 296742..297773
/gene="aroB"
/locus_tag="HPKB_0294"
/note="Consensus COG by CONSORF: COG0337"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate synthase"
/protein_id="YP_005761820.1"
/db_xref="GI:384887309"
/db_xref="GeneID:12340705"
/translation="MQEILIPLKEKSYKVFLGELPEIELKQKALIISDSIVAGLHLSY
LLKRLKALEVRVCVIESGEKYKNFNSLERILNNAFEMQLNRHSLMIALGGGVISDMVG
FASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFYQPKAVYIDLAFL
KTLEKREFQAGVAEIIKMAVCFDKNLVETLETKDLKDCLEEVIFQSVSIKAQVVMQDE
KEQNIRAGLNYGHTFGHAIEKETDYERFLHGEAIAIGMRMANDLALSLGMLTLKEYER
IEDLLKKFDLIFNYQITDIQKFYERLFLDKKSENKTIKFILPKGVGAFEIASHIPKET
IIKVLEKWH"
misc_feature 296775..297758
/gene="aroB"
/locus_tag="HPKB_0294"
/note="Dehydroquinate synthase (DHQS) catalyzes the
conversion of DAHP to DHQ in shikimate pathway for
aromatic compounds synthesis; Region: DHQS; cd08195"
/db_xref="CDD:173954"
misc_feature order(296841..296843,297021..297029,297036..297038,
297045..297047,297096..297101,297105..297107,
297162..297164,297171..297173,297216..297218,
297240..297242,297261..297263,297273..297275,
297432..297434,297444..297446,297483..297485)
/gene="aroB"
/locus_tag="HPKB_0294"
/note="active site"
/db_xref="CDD:173954"
misc_feature order(296943..296945,296964..296969,297048..297050,
297057..297059,297063..297071,297135..297140,
297165..297182)
/gene="aroB"
/locus_tag="HPKB_0294"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173954"
misc_feature order(297261..297263,297432..297434,297483..297485)
/gene="aroB"
/locus_tag="HPKB_0294"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173954"
gene 297764..299335
/locus_tag="HPKB_0295"
/db_xref="GeneID:12340706"
CDS 297764..299335
/locus_tag="HPKB_0295"
/note="Consensus COG by CONSORF: COG0668"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761821.1"
/db_xref="GI:384887310"
/db_xref="GeneID:12340706"
/translation="MALRVLLFFCFLFLQAEDKSQELLSIQKQMALVDKKLAKDDNVW
LKKFENYKIYNQIYTEKESVRQELRRLKNKKSKDLLKISTLEHTLKALESQQKMFESY
GVNPFKDLIERPNIPNIPNIANPIAIIDGISFIKSMRLKHESLKSNQTSLEEVLRLLD
QKHQLLNQWHALDKSAKLSDEIYQTQAKRLELQGAQNILKTTIGIFQKDSDEAISIVK
SQVKNQLFKLIYVFLAALLSVVFAWILKIISSKYIENNERVYTVNKAINFVNVSVIIL
IFLFSYLENVTYLVTVLGFASAGLAIAMKDLFMSLLGWFIILIGGSVHVGDRVRIAKG
TDIFIGDVLDISMLHITILEDVTFTTYTNNRRAGRIIFVPNNYIFTTMFANYSHFGMK
TVWDGVDFCVTFDSDFKKASKIALNIATELSKEYTDITYKQLNKMRDRYSLRSLSVKP
RCFLMPESNGIKISVWYQTNSYATLSLRSKIVAEIVEAFLKEENIHIAYTTSKLLKVD
ADFLGDGFGNKREQK"
misc_feature 298355..299296
/locus_tag="HPKB_0295"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature 298559..299254
/locus_tag="HPKB_0295"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 299332..300588
/locus_tag="HPKB_0296"
/db_xref="GeneID:12340707"
CDS 299332..300588
/locus_tag="HPKB_0296"
/note="Consensus COG by CONSORF: COG0621"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761822.1"
/db_xref="GI:384887311"
/db_xref="GeneID:12340707"
/translation="MKKVYFKTFGCRTNLFDTQVMGENLKDFSATLEEQEADIIIINS
CTVTNGADSAVRSYAKKMARLNKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKIN
VLLQEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRA
RSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKGSNIARLIKKLSQIAGLKRIR
IGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLEVIA
SKNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS
LEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEAQKDGEFKALDQFFNPIKIK
SDKPLRASFLEIKEYEIKERENHAVF"
misc_feature 299338..300579
/locus_tag="HPKB_0296"
/note="radical SAM methylthiotransferase, MiaB/RimO
family; Region: TIGR00089"
/db_xref="CDD:161701"
misc_feature 299338..299613
/locus_tag="HPKB_0296"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature 299743..300363
/locus_tag="HPKB_0296"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(299761..299763,299767..299769,299773..299775,
299779..299787,299887..299889,299893..299898,
299989..299994,300070..300072,300190..300192,
300280..300285)
/locus_tag="HPKB_0296"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 300575..302227
/gene="ftsH"
/locus_tag="HPKB_0297"
/db_xref="GeneID:12340708"
CDS 300575..302227
/gene="ftsH"
/locus_tag="HPKB_0297"
/note="Consensus COG by CONSORF: COG0465. Candidate starts
by CONSORF: 300551,300575"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="YP_005761823.1"
/db_xref="GI:384887312"
/db_xref="GeneID:12340708"
/translation="MPFSKFLENLTAPFKRIKNRSLVLALGFLILTFCLLLFLILSDV
SRLISGKDFFYVIQSHPKQTLIEDENYFYANKGLYKTNKEAFLRAYKIPESMPIEKRE
NLNKVSKIFLALLFFISSMLFGIFWRLPKRLDAKMNLESAHKNELENAFQRYDALGVR
FEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASE
ARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARGGHRSD
EREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDLLER
QNILEKLLENKKHMLNYLKIAKICVGFSGAMLATLINESALNALKHQRIEITESDILE
VKDKIAYGKKKPQTLDENQKELVALYQSAKALSAYWLEIEFDKAPLLGEFIAFNENKI
HSESEIKNYIKVYLSGTIILELLYKERYSLSKQDLQKAKFLNEFMASELLLAPTKESL
SVLYEEQLEFLKPQIAACKRLSALLLEQEYLEHSNLYDWLNG"
misc_feature 300701..302224
/gene="ftsH"
/locus_tag="HPKB_0297"
/note="ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones]; Region: HflB;
COG0465"
/db_xref="CDD:30813"
misc_feature 301067..301558
/gene="ftsH"
/locus_tag="HPKB_0297"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 301178..301201
/gene="ftsH"
/locus_tag="HPKB_0297"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(301181..301204,301355..301357,301487..301489)
/gene="ftsH"
/locus_tag="HPKB_0297"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 301343..301360
/gene="ftsH"
/locus_tag="HPKB_0297"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 301529..301531
/gene="ftsH"
/locus_tag="HPKB_0297"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 302230..302748
/locus_tag="HPKB_0298"
/db_xref="GeneID:12340709"
CDS 302230..302748
/locus_tag="HPKB_0298"
/note="Consensus COG by CONSORF: COG0596. Candidate starts
by CONSORF: 302212,302224,302230"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761824.1"
/db_xref="GI:384887313"
/db_xref="GeneID:12340709"
/translation="MRFFSGFGFINESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNE
ISQQRRINSLLLFSPCMLAHKSLAFKRLQLSLFQKDPQSYMDNFYQEVGLSAKMERFK
KEGSLEELEFLLNYKYSDSTIRFLLEKGVKIEAFIGLKDRITDIQALLEFFMPLVQVW
QFKDCNHLLQKS"
gene 302761..303234
/locus_tag="HPKB_0299"
/db_xref="GeneID:12340710"
CDS 302761..303234
/locus_tag="HPKB_0299"
/note="Consensus COG by CONSORF: COG0477"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761825.1"
/db_xref="GI:384887314"
/db_xref="GeneID:12340710"
/translation="MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSILPELNLT
PFESGKLMAQIFVRFNYILGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFV
FYYTPYILNAQKAGEAALQSAEFARSHAQSEWLFKELFVLVCALFFWRLLGKNAL"
misc_feature 302833..303114
/locus_tag="HPKB_0299"
/note="Domain of unknown function (DUF4149); Region:
DUF4149; pfam13664"
/db_xref="CDD:205841"
gene 303282..312029
/locus_tag="HPKB_0300"
/db_xref="GeneID:12340711"
CDS 303282..312029
/locus_tag="HPKB_0300"
/note="Consensus COG by CONSORF: COG5295"
/codon_start=1
/transl_table=11
/product="putative vacuolating cytotoxin (VacA)-like
protein"
/protein_id="YP_005761826.1"
/db_xref="GI:384887315"
/db_xref="GeneID:12340711"
/translation="MKKFKKKPKSIKRSHQKTILKRPLWLAPLLISGFASGVYADGTD
ILGLSWGEKSQKVCVHHPWYALWSCDKWEEKTQQFTGNQLITKTWAGGNAANYYHSQN
NQDITANLKNDNGTYFLSGLYNYTGGENNGGNLNIELGSNATFDLGAHSGNSFTSWYP
NGHTNVTFSAGTINVNNSVEVGNRVGSGAGTHTGTATLNLNANQVTINSNISAFKTSQ
VNIGNANSAITIGSVSLSGDVCSSLASVGVGANCSTSGPSYSFKGTTNATNTAFSNAN
GSFTFEENAAFSGAKLNGGAFTFNKEFSATNNTAFNSGSFNFKGASSFNGANFNNASY
TFNNQATFNNSSFNGGTFTFNNQNNQSAQRPQIQNSSFSGGTTTLKGFVNFQQAFNNS
SHQLMVQNASFNNANFNNTGKITINESASFNNTTFNTSINTNNMTITGSVTLSGKNDL
KNGSTLDFGSSQVALTQGTTFNLTSLGSEKSVTILNSSGGITYNNLLNHALNSLTNAL
KTNEGSSDPQSFAQGLWDMITYNGVTGQLLSADATTSKPADSSPSKSSTNSAQVYQVG
YKIGDIIYKLQETFSHNSIIIQALESGTYTPPPVISGSKFDLSASNYIDSNMPWYDHK
SYIPKSQNFTESGTYYLPSVQIWGSYTNSFKQTFSASNSNLVIGYNATWTDHNVSSSD
TVSFGDTSGNALNGHCGPWPYYQCTGTTNGAYSAYHVYITANLRSGNRIGTGGAANLV
FNGVDSVNIANATITQHNAGIYSSSMTFSTQGMDNSQNWNGLNPNGTLSVYGATFTNQ
AKDGKFIFNAGQAVFENTNFNGGSYQFNGDSLNFSNNNQFNSGSFEIGAKNASFDNAN
FNNSASFNFNNSSATTLFVGDFTNANSNLQIAGSAVFGNSANGSQNNANFNNTGSVNI
SGNATFDNVVFNSPTNTSVKGQVTLNNITLKNLNAPLSFGDGTITFNAHSVINIGEAI
TNGNPITLVSSSKEIEYNNAFSKNLWQLINYQGHGASSEKLVSSVGNGVYDVVYSFNN
QTYNFQEIFSPNSISIRRLGVGMVFDYMDMEKSDHLYYQNALGFMTYMPNSYNNNLGN
SNNTIYYYDKSIDFYASGKTLFTKAEFSQTFTGQNSAIVFGAKNIWTNASDAPQSNTI
IRFGDNKGAGSNDASGHCWNLQCIGFITGHCWNLQCIGFITGHYEAQKIYITGSIESG
NRISSGGGASLNFNALQGILLTNATLYNRAAGTQSSSMNFTSNGANIQAQNSYFIDDT
AQNGGNPNFSFNALNLDFSNSSFRGYVGKTQSVFKFNAKNAISFTNSTNLSSGLYQMQ
AKSVLFDNSNLSVSVGTSSIKANAISLSQNASINASNHSTLELQGDLNLNDTSSLNLN
QSVINVSNNATINDHASLIVSNNAHINFNGAVNFNSANITMSLNDSSIVFKGAISLGG
QFNLGNHSSLDFQGSSAITSNTAFNFYDNAFSQSPITFHQALDIKAPLSLGGNLLNPN
NSSVLNLKNSQLVFNDQGSLNIANIDLLSDLNDNKNRVYNIIQAGMNSNWYERINFFG
MRINDGIYDATNQTYSFTNPLNNALKITESFKDNQLSVTLSQIPGIKNTLYNISSEVF
NYQKVYNNANGVYSYSDDAEGVFYLTSNVKGYYNPNQFYQASGSNNTTKNNNLTSESS
VISQTYNAQGNPISALHVYNKGYNFNNIKALGQMALKLYPEIKKILGNDFSLSSLSDL
NPNALNQLTKLITPNDWKNINELIDNANNSVVQNFNNGTLIVGAAKIGQTDTNSAVVF
GGLGYQKPCDYTDIVCQKFRGTYLGQLLESSSADLGYIDTTFNAKEIYLTGTLGSGNA
WGTGGSASVTFNSQTSLVLNQANIVSSQTDGIFSMLGQEGIDKVFNQAGLANILGEVA
MQSINKAGGLGNLIADTLGSDSVIGGHLTPEQKNQTLSQLLGQNNFDNLMNDSGLNTA
IKDLIRQKLGFWTGLVGGLAGLGGIDLQNPEKLIGSMSINDLLSKKGLFNQITGFISA
NDIGQVISVILQDIVKPSEALQNDVVALGKQMIGEFLGQDTLNSLESLLQNQQIKSVL
DKVLAAKGLGSIYEQGLGDLIPSLGKKGLFAPYGLSQVWQRGDFSFNAQGNVFVQNST
FSNANGVTLSFNAGNSLIFAGNNHISFTNHAGTLQLLSDQVSNINITTLNASNGLKIN
AANNNVLVSQGNLFINASCAQQSDPTTANIANPCTLNAQSANNASSNNASNNAPIALN
NNDESLMVTANDFNFSGNIYANGVVDFSKVKGSANIKNLYLYNNAQFQANNLTISNQA
VLEKNASFVTNNLNIQGAFNNNATHKIEVLQNLTIASNASLSTGIYGLEVGGALNNFG
AIHFNLENIQTPTPLIQAEGIINLNTTQTPFMNVNNSMANNTTYTLLKSSRYIDYNIN
PNSLQSYLNLYTLININGNHIEEKNGVLTYLGQRVLLQDKGLLLSVALPNSNNTHQNN
ILSLSVLHNQIKMSYGNKAMDFTPPTLQDYIVGIQGQSALNKIEAVGGNNAIKWLSTL
MMETKENPLFAPIYLKNHSLNEILGVTKDIQNTASLISNPNFRDNATNLLELASYTQQ
TSRLTKLSDFRSREGESDFSLLELKNKRFSDPNPGEVFVKHSQLSKHQNNLWVQGVGG
ASFISGGNGTLYGLNVGYDRLVKNVILGGYVAYGYSDFNGNIMHSLGNNVDVGVYARA
FLKRNEFTLSANETYGGNASNINSSNPLLSVLNQRYSYNTWTTSVNGNYGYDFMFKQK
SVVLKPQVGLSYHFIGLSGMKGKMNDAAYKQFLMHSNPSNESVLTLNMGLESRKYFGQ
NSYYFVTARLGRDLLIKSKGGNVVRFVGENTLLYRKGEVFNTFASVITGGEMHLWRLM
YVNAGVGLKMGLQYQDINITGNVGMRVAF"
misc_feature 305394..305573
/locus_tag="HPKB_0300"
/note="Putative vacuolating cytotoxin; Region: VacA2;
pfam03077"
/db_xref="CDD:111918"
misc_feature 306822..307001
/locus_tag="HPKB_0300"
/note="Putative vacuolating cytotoxin; Region: VacA2;
pfam03077"
/db_xref="CDD:111918"
misc_feature <308298..>309014
/locus_tag="HPKB_0300"
/note="PPE-repeat proteins [Cell motility and secretion];
Region: COG5651"
/db_xref="CDD:35210"
misc_feature 308730..308909
/locus_tag="HPKB_0300"
/note="Putative vacuolating cytotoxin; Region: VacA2;
pfam03077"
/db_xref="CDD:111918"
misc_feature 311202..>311822
/locus_tag="HPKB_0300"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 312077..313294
/locus_tag="HPKB_0301"
/db_xref="GeneID:12340712"
CDS 312077..313294
/locus_tag="HPKB_0301"
/note="Consensus COG by CONSORF: COG0019"
/codon_start=1
/transl_table=11
/product="diaminopimelate decarboxylase"
/protein_id="YP_005761827.1"
/db_xref="GI:384887316"
/db_xref="GeneID:12340712"
/translation="MFNYEELFQTHKTPFYLYDFGKIKQAFLNYKEAFKGRKSLICYA
LKANSNLSILSLLASLESGADCVSIGEIHRALKAGIKPYRIVFSGVGKSESEIEQALK
LNILFLNVESFMELTTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVG
EKEALEMFLWAKKSAFLEPISVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLR
FFDVGGGIGVSYENEETIKLYDYAQRILNALQGLDLTIICEPGRSIVAESGELITQVL
YEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPYKGRKISPCDVVGPVCESSDT
FLKGVHLPELEPGDKLVIEKVGAYGSSMASQYNSRPKLLELALEDHQIRVIRKREALE
DLWRLEEEGLKGV"
misc_feature 312077..313270
/locus_tag="HPKB_0301"
/note="diaminopimelate decarboxylase; Region: lysA;
TIGR01048"
/db_xref="CDD:188105"
misc_feature 312107..313207
/locus_tag="HPKB_0301"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Diaminopimelate Decarboxylase; Region:
PLPDE_III_DapDC; cd06828"
/db_xref="CDD:143501"
misc_feature order(312206..312208,312212..312214,312269..312271,
312338..312340,312479..312481,312623..312625,
312629..312631,312638..312640,312746..312751,
312851..312862,312968..312970,312980..312982,
313061..313063,313148..313150,313160..313162,
313172..313174)
/locus_tag="HPKB_0301"
/note="active site"
/db_xref="CDD:143501"
misc_feature order(312206..312208,312212..312214,312269..312271,
312338..312340,312479..312481,312623..312625,
312629..312631,312638..312640,312746..312751,
312851..312862,313061..313063,313148..313150)
/locus_tag="HPKB_0301"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143501"
misc_feature order(312212..312214,312629..312631,312638..312640,
312860..312862,312968..312970,312980..312982,
313061..313066,313148..313150,313160..313162,
313172..313174)
/locus_tag="HPKB_0301"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143501"
misc_feature order(312212..312214,313061..313063)
/locus_tag="HPKB_0301"
/note="catalytic residues [active]"
/db_xref="CDD:143501"
misc_feature order(312227..312232,312275..312280,312284..312289,
312344..312352,312362..312364,312407..312409,
312416..312418,312539..312550,312905..312907,
312911..312913,312932..312934,312938..312940,
313052..313069,313073..313075,313157..313165,
313169..313180,313187..313189)
/locus_tag="HPKB_0301"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143501"
gene 313299..313589
/locus_tag="HPKB_0302"
/db_xref="GeneID:12340713"
CDS 313299..313589
/locus_tag="HPKB_0302"
/codon_start=1
/transl_table=11
/product="chorismate mutase/prephenate dehydratase"
/protein_id="YP_005761828.1"
/db_xref="GI:384887317"
/db_xref="GeneID:12340713"
/translation="MQKNLDSLLENLRTEIDVLDNELSDLLDKRLEIALKIALIKQEN
PIYCPRREQEILKRLSQRDFKHLNEEILTGFYAEVFKISRKFQENALKELKK"
misc_feature 313335..313562
/locus_tag="HPKB_0302"
/note="Chorismate mutase type II; Region: CM_2;
smart00830"
/db_xref="CDD:197899"
gene 313602..314474
/locus_tag="HPKB_0303"
/db_xref="GeneID:12340714"
CDS 313602..314474
/locus_tag="HPKB_0303"
/note="Consensus COG by CONSORF: COG4866"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761829.1"
/db_xref="GI:384887318"
/db_xref="GeneID:12340714"
/translation="MFEKITLAHKDLFSRFLSTQKIVLSDVSFTNCFLWQHARLIQVA
VIRDCLVIQTTYENQKPFYFYPIGKNAHECVKELLKREKNLRFHSLTLEQKDDLKDNF
VGVFDFTYNRDRSDYIYSIEELIALKGKKYHKKKNHLNQFLTNCANFVYEKISSQNRK
EVLEASKEWFLESQTDDIGLISENKGIQSVLENYESLDVKGGLVRVNGEIVSFSFGEV
LNEETALIHIEKARMDIAGAYQIINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYN
PVFLIDKYEAVAKN"
misc_feature 313602..314471
/locus_tag="HPKB_0303"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG4866"
/db_xref="CDD:34475"
gene 314475..316154
/locus_tag="HPKB_0304"
/db_xref="GeneID:12340715"
CDS 314475..316154
/locus_tag="HPKB_0304"
/codon_start=1
/transl_table=11
/product="para-aminobenzoate synthase subunit I"
/protein_id="YP_005761830.1"
/db_xref="GI:384887319"
/db_xref="GeneID:12340715"
/translation="MIFGDFKYQKRIKKLTATNLNELKNALDFISQNRGNGYFVGYLL
YEARLAFLDENFQSQTPFLYFEQFLERKKYSLEPLKEHAFYPKIHSFLDQKTYFKQFK
AVKEYLKNGDTYQVNLTMDLLLDTKARLERIFKEVIHNQNTPFKAFIENEFRSVLSFS
PELFFELEFLDTAIKIVTKPMKGTIARSNNPLIDEKNRLFLQNDDKNRSENVMIVDLL
RNDLSRLALKNSVKVNHLFEIISLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVT
GCPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFSVPIRTLEKRAREDFLHLGVGS
GVTYKSEAPKEYEESFLKSFFVMPKIEFEIVETMKIIKKDQKLEINNKNAHKERLMNS
AQYFNFKHDENLLDFELEKEGVLRVLLNKKGKLIKEYKALEPLKSLEIRLSEAPIDKH
NDFLYHKTTYAPFYQNARALIKKGVIFDEIFYNQDLELTEGARSNLILEIHNRLLTPY
FSAGALNGTGVMGLLKKGLVGHAPLKLQDLQRAAKIYCINALYGLVEVKIK"
misc_feature 314517..315542
/locus_tag="HPKB_0304"
/note="aminodeoxychorismate synthase; Provisional; Region:
PRK07508"
/db_xref="CDD:181007"
misc_feature 314751..315530
/locus_tag="HPKB_0304"
/note="chorismate binding enzyme; Region: Chorismate_bind;
pfam00425"
/db_xref="CDD:201219"
misc_feature 315552..316145
/locus_tag="HPKB_0304"
/note="PyridoxaL 5'-Phosphate Dependent Enzymes class IV
(PLPDE_IV). This D-amino acid superfamily, one of five
classes of PLPDE, consists of branched-chain amino acid
aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate...; Region:
PLPDE_IV; cl00224"
/db_xref="CDD:206913"
gene 316348..317367
/gene="amiE"
/locus_tag="HPKB_0305"
/db_xref="GeneID:12340716"
CDS 316348..317367
/gene="amiE"
/locus_tag="HPKB_0305"
/note="Consensus COG by CONSORF: COG0388"
/codon_start=1
/transl_table=11
/product="acylamide amidohydrolase"
/protein_id="YP_005761831.1"
/db_xref="GI:384887320"
/db_xref="GeneID:12340716"
/translation="MRHGDISSSPDTVGVAVVNYKMPRLHTKNEVLENCRNIAKVVGG
VKQGLPGLDLIIFPEYSTHGIMYDRQEMFDTAASIPGEETAIFAEACKKNKVWGVFSL
TGEKHEDPKKNPYNTLILINDKGEIVQKYRKILPWCPIECWYPGDKTYVVDGPKGLKV
SLIICDDGNYPEIWRDCAMRGAELIVRCQGYMYPAKEQQIAIVKAMAWANQCYVAVAN
ATGFDGVYSYFGHSSIIGFDGHTLGECGEEENGLQYAQLSVQQIRDARKYDQSQNQLF
KLLHRGYSGVFASGDGDKGVAECPFEFYKTWVNDPKKAQENVEKFTRPSVGVAACPVG
DLPTK"
misc_feature 316348..317364
/gene="amiE"
/locus_tag="HPKB_0305"
/note="acylamide amidohydrolase; Provisional; Region:
amiE; PRK13286"
/db_xref="CDD:183949"
misc_feature 316384..317274
/gene="amiE"
/locus_tag="HPKB_0305"
/note="aliphatic amidases (class 2 nitrilases); Region:
aliphatic_amidase; cd07565"
/db_xref="CDD:143589"
misc_feature order(316489..316497,316684..316686,316747..316785,
316843..316845,316852..316866,316870..316875,
316879..316884,316927..316932,316939..316941,
316948..316953,316957..316962,316969..316974,
317029..317031,317059..317061,317074..317076,
317083..317085,317089..317109,317128..317130,
317143..317151,317155..317160,317164..317202,
317236..317238,317242..317271)
/gene="amiE"
/locus_tag="HPKB_0305"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:143589"
misc_feature order(316522..316524,316744..316746,316756..316758,
316768..316770,316840..316845,316918..316920)
/gene="amiE"
/locus_tag="HPKB_0305"
/note="active site"
/db_xref="CDD:143589"
misc_feature order(316522..316524,316744..316746,316840..316842)
/gene="amiE"
/locus_tag="HPKB_0305"
/note="catalytic triad [active]"
/db_xref="CDD:143589"
misc_feature order(316684..316686,316747..316785,316843..316845,
316852..316866,316870..316875,316879..316884,
316930..316932,316939..316941,316948..316953,
316957..316962,316969..316974,317059..317061,
317143..317151,317155..317160,317164..317202,
317236..317238,317242..317271)
/gene="amiE"
/locus_tag="HPKB_0305"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143589"
gene complement(317450..319936)
/gene="flgL"
/locus_tag="HPKB_0306"
/db_xref="GeneID:12340717"
CDS complement(317450..319936)
/gene="flgL"
/locus_tag="HPKB_0306"
/note="Consensus COG by CONSORF: COG1344. Candidate starts
by CONSORF: 319942,319936"
/codon_start=1
/transl_table=11
/product="flagellar hook-associated protein FlgL"
/protein_id="YP_005761832.1"
/db_xref="GI:384887321"
/db_xref="GeneID:12340717"
/translation="MRVTFGSKYNQMNNYQNALQNKINDTNTQIASGLKIRYGYQNSN
INNQNLKFQYEENTLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVH
SETSRAAIANDLERLREHMMNVANTSIGGEFLFGGSKVDRPPIDSEGKYHGNGEDLNA
LISSDNLVPYNISGQDLFLGADKDKHKLITTNIKLLNQNKLHPDVMDALEHSSLPEEV
FIKPGDTLRELIGDNDKDPTNDPKEFFYLQGIRPDGSSFKEKFALSKAYQNKESATKV
SDLLDKIGHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDFHLISSDGDFDDLDA
LRSSAKRVTEYVKSAFVTDRSLSQVKAVPNMYNPRVLEIPSVFVTKDNVLANKNTKLS
EIFGDSVETLKINASRLDDTSAIKIPNLPIGLDIPILLDVKNSTIKDLKDAIKERFNN
EVDVEIETNGRLRIIDNSSNQSPISLVLSALDQKGLEVAGIPTNNASEYQKTYFNKEG
AKLESNVAQIAQNGAANGSTKLSEVANGSLENSVFNMKLNDVNGSFLEAQMILDNNGA
FLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISDNP
TSKESKERFIELLKQAKGNLSVNLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNA
LHSDKPSLKLNANNALIIDKPSVNFFDQLENIITSVRKGIYRPDALGDTYSSDMRNLG
IQNGITLIDHLSDHIEKMIAKNGTHGKAFENIIRRNEVLKTQVQSIRGETTGTDMAET
YNKFSNLTNNYNAVLASTNKINNLSLTKYL"
misc_feature complement(317453..319936)
/gene="flgL"
/locus_tag="HPKB_0306"
/note="flagellar hook-associated protein FlgL; Validated;
Region: flgL; PRK08412"
/db_xref="CDD:181415"
misc_feature complement(319520..319912)
/gene="flgL"
/locus_tag="HPKB_0306"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
STS 319288..320742
/standard_name="D1S3695"
/db_xref="UniSTS:474273"
gene 320195..320509
/gene="rplU"
/locus_tag="HPKB_0307"
/db_xref="GeneID:12340718"
CDS 320195..320509
/gene="rplU"
/locus_tag="HPKB_0307"
/note="Consensus COG by CONSORF: COG0261"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L21"
/protein_id="YP_005761833.1"
/db_xref="GI:384887322"
/db_xref="GeneID:12340718"
/translation="MSYAIFKHGGKQYKVVEGDIVLLDKMDKEPKALVELVEVLAVSK
EGKLSCGKPFVNGAKIEAEVINEGRSKKVITFKKRRRKDSKTKRGFRRDFTRVRITKI
VA"
misc_feature 320201..320506
/gene="rplU"
/locus_tag="HPKB_0307"
/note="50S ribosomal protein L21; Validated; Region: rplU;
PRK05573"
/db_xref="CDD:180138"
gene 320524..320790
/gene="rpmA"
/locus_tag="HPKB_0308"
/db_xref="GeneID:12340719"
CDS 320524..320790
/gene="rpmA"
/locus_tag="HPKB_0308"
/note="Consensus COG by CONSORF: COG0211"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L27"
/protein_id="YP_005761834.1"
/db_xref="GI:384887323"
/db_xref="GeneID:12340719"
/translation="MAHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTK
MHPGNNVGMGKDHTLYALIDGVVKFEHKDRNRKKVSVVSQNFGE"
misc_feature 320524..320769
/gene="rpmA"
/locus_tag="HPKB_0308"
/note="50S ribosomal protein L27; Validated; Region: rpmA;
PRK05435"
/db_xref="CDD:235464"
gene 320907..322556
/locus_tag="HPKB_0309"
/db_xref="GeneID:12340720"
CDS 320907..322556
/locus_tag="HPKB_0309"
/note="Consensus COG by CONSORF: COG0747"
/codon_start=1
/transl_table=11
/product="heme-binding lipoprotein"
/protein_id="YP_005761835.1"
/db_xref="GI:384887324"
/db_xref="GeneID:12340720"
/translation="MNNVFVKGLFFFLLLFGFFLKASENPNATLNPSKENVSVEEQKR
FGGVLVFARGADGSSMDPALVTDGESYVATGNIYDTLVQFKYGTTEIEPALATSWEIS
PDGLVYTFHLRKGVYFHQTKYWNKKVEFSAKDVLFSFERQMHKAKRYYSPGAKSYKYW
EGMGMSHIIKSIEALDDYTIRFTLNEPEAPFLANLGMDFLSILSKDYADYLAQNNKKD
ELAKKPIGTGPFKFFLWNKDEKIILLKNQDYWGPKAYLDKVVVRTIPNPSTRALALRT
GEIMLMTGPNLNEVEQLEKVPNIVVDKSAGLLASWLSLNTQKKYFNNPLVRLAINHAI
NVDDYIKVLYEGFAQKMVNPFPPTIWGYNYNIKPYEYDLKKAKELLKQAGYPNGFKTT
IFTTATRNPKGAVFIQASLAKIGIDVKIEVYEWGAYLKRTGLGEHEMAFAGWMADIAD
PDNFLYTLWSKQAASAIPTQNGSFYKSDAFSDLLLKAKRVSDQKEREALYLKAQEIIH
KDAPYVPLAYPYSVVPHLSKVKGYKTTGVNVNRFFKVYLEK"
misc_feature 321048..322502
/locus_tag="HPKB_0309"
/note="The substrate-binding component of an ABC-type
dipeptide import system contains the type 2 periplasmic
binding fold; Region: PBP2_DppA_like; cd08493"
/db_xref="CDD:173858"
misc_feature 321174..322301
/locus_tag="HPKB_0309"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
misc_feature order(322179..322181,322191..322193,322230..322241,
322245..322247)
/locus_tag="HPKB_0309"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:173858"
gene 322566..323570
/locus_tag="HPKB_0310"
/db_xref="GeneID:12340721"
CDS 322566..323570
/locus_tag="HPKB_0310"
/note="Consensus COG by CONSORF: COG0601"
/codon_start=1
/transl_table=11
/product="dipeptide permease protein"
/protein_id="YP_005761836.1"
/db_xref="GI:384887325"
/db_xref="GeneID:12340721"
/translation="MLSFIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKAN
QAAIDALREQFGLNKPLIEQYFFFINNVLHGNFGTSIMTGEPVMHEFLQRFPATVELA
LIALFMALVLGISVGVLAAIKRYSVFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLG
WLPVFGRLSDVYYLDGPTGFCLIDSLIARDYGAFVDTIKHLILPSIVLATVSTAVIAR
MTRASMAEVSKEDYVRTAKAKGCSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMI
TETVFSWPGIGKWIVNALNQRDFPIIQSMSLIIAMMYIGANLLVDILYAFIDPRIRLS
"
misc_feature 322566..323561
/locus_tag="HPKB_0310"
/note="dipeptide transporter permease DppB; Provisional;
Region: PRK10914"
/db_xref="CDD:182834"
misc_feature 322848..323531
/locus_tag="HPKB_0310"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(322896..322901,322908..322913,322926..322928,
322959..322970,322974..323003,323010..323015,
323019..323021,323196..323201,323205..323207,
323211..323213,323220..323225,323229..323231,
323241..323246,323253..323255,323304..323306,
323346..323351,323358..323360,323379..323390,
323397..323402,323448..323453,323481..323486,
323493..323498,323502..323507,323514..323519,
323526..323531)
/locus_tag="HPKB_0310"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(322977..323021,323379..323396)
/locus_tag="HPKB_0310"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(323019..323021,323181..323183,323397..323399,
323442..323444,323451..323453,323481..323483)
/locus_tag="HPKB_0310"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(323256..323294,323310..323315,323325..323327)
/locus_tag="HPKB_0310"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 323570..324427
/locus_tag="HPKB_0311"
/db_xref="GeneID:12340722"
CDS 323570..324427
/locus_tag="HPKB_0311"
/note="Consensus COG by CONSORF: COG1173"
/codon_start=1
/transl_table=11
/product="dipeptide permease protein"
/protein_id="YP_005761837.1"
/db_xref="GI:384887326"
/db_xref="GeneID:12340722"
/translation="MESFREFIQQFKKNKAAVVGAWIVLLLVVCAIFAPLLAPHDPYV
QNAQDRLLKPIWEHGGNVKYLLGTDDLGRDILSRLIYGARISLTIGIVSMGIAVFFGT
ILGLIAGYFGGKTDAVIMRIMDIMFALPSILLIVIVVAVLGPSLTNAMLAIGFVGIPG
FARLVRSSVLGEKEKEYVIASKINGSSHLRLMCKVIFPNCIIPLIVQTTMGFASTVLE
AAALSFLGLGAQPPKPEWGAMLINSMQYIATAPWMLVFPGVMIFLTVMSFNLVGDGIM
DALDPKRAS"
misc_feature 323570..324415
/locus_tag="HPKB_0311"
/note="dipeptide transporter; Provisional; Region:
PRK10913"
/db_xref="CDD:182833"
misc_feature 323579..323731
/locus_tag="HPKB_0311"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:221848"
misc_feature 323816..324364
/locus_tag="HPKB_0311"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(323864..323869,323876..323881,323894..323896,
323924..323935,323939..323968,323975..323980,
323984..323986,324035..324040,324044..324046,
324050..324052,324059..324064,324068..324070,
324080..324085,324092..324094,324143..324145,
324185..324190,324197..324199,324218..324229,
324236..324241,324281..324286,324314..324319,
324326..324331,324335..324340,324347..324352,
324359..324364)
/locus_tag="HPKB_0311"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(323942..323986,324218..324235)
/locus_tag="HPKB_0311"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(323984..323986,324020..324022,324236..324238,
324275..324277,324284..324286,324314..324316)
/locus_tag="HPKB_0311"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(324095..324133,324149..324154,324164..324166)
/locus_tag="HPKB_0311"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 324439..325302
/locus_tag="HPKB_0312"
/db_xref="GeneID:12340723"
CDS 324439..325302
/locus_tag="HPKB_0312"
/note="Consensus COG by CONSORF: COG0444"
/codon_start=1
/transl_table=11
/product="dipeptide ABC transporter, ATP-binding protein
(dppD)"
/protein_id="YP_005761838.1"
/db_xref="GI:384887327"
/db_xref="GeneID:12340723"
/translation="MILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSG
KSITSLSILGLIEKPGQIVGGSIQFLGQDLLQLKEKQVQKEIRGKKIGMIFQEPMTSL
NPSYTVGFQINEVLKIHHPNLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQR
QRVMIAMAMVCEPEILIADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVV
AQIADEVVVMYKGHVVEQASAKELFADPRHPYTKALLSAIPKPGKEYRKKRLETVDEN
IDYLSFQKELR"
misc_feature 324442..325149
/locus_tag="HPKB_0312"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 324499..325209
/locus_tag="HPKB_0312"
/note="nickel import ATP-binding protein NikD; Region:
nickel_nikD; TIGR02770"
/db_xref="CDD:131817"
misc_feature 324553..324576
/locus_tag="HPKB_0312"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(324562..324567,324571..324579,324724..324726,
324973..324978,325075..325077)
/locus_tag="HPKB_0312"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 324715..324726
/locus_tag="HPKB_0312"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 324901..324930
/locus_tag="HPKB_0312"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 324961..324978
/locus_tag="HPKB_0312"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 324985..324996
/locus_tag="HPKB_0312"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 325063..325083
/locus_tag="HPKB_0312"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 325138..>325251
/locus_tag="HPKB_0312"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
gene 325299..326105
/gene="dppF"
/locus_tag="HPKB_0313"
/db_xref="GeneID:12340724"
CDS 325299..326105
/gene="dppF"
/locus_tag="HPKB_0313"
/note="Consensus COG by CONSORF: COG4608"
/codon_start=1
/transl_table=11
/product="dipeptide transport system atp-binding protein"
/protein_id="YP_005761839.1"
/db_xref="GI:384887328"
/db_xref="GeneID:12340724"
/translation="MKLLEIKELKKSYAIDRGLFKPKRIIHALNGISFEVEQNEVLSI
VGESGCGKSTTAKILAGIERQDSGAIYFNGKRHLHFSKQDWFDYRKKVQMIFQDPYSS
LNPRWKVGEIIAEPLLLNSHFSKQEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQR
IGIARALILHPSVVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEH
ISDKIIVMNQGQIVETGDVDSVISAPKHPYTQKLLNAVPHLEKSMQRFAE"
misc_feature 325299..326084
/gene="dppF"
/locus_tag="HPKB_0313"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:31321"
misc_feature 325305..326003
/gene="dppF"
/locus_tag="HPKB_0313"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 325434..325457
/gene="dppF"
/locus_tag="HPKB_0313"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(325443..325448,325452..325460,325587..325589,
325827..325832,325929..325931)
/gene="dppF"
/locus_tag="HPKB_0313"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 325578..325589
/gene="dppF"
/locus_tag="HPKB_0313"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 325755..325784
/gene="dppF"
/locus_tag="HPKB_0313"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 325815..325832
/gene="dppF"
/locus_tag="HPKB_0313"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 325839..325850
/gene="dppF"
/locus_tag="HPKB_0313"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 325917..325937
/gene="dppF"
/locus_tag="HPKB_0313"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 325992..>326084
/gene="dppF"
/locus_tag="HPKB_0313"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
gene 326124..327206
/gene="obgE"
/locus_tag="HPKB_0314"
/db_xref="GeneID:12340725"
CDS 326124..327206
/gene="obgE"
/locus_tag="HPKB_0314"
/note="Consensus COG by CONSORF: COG0536"
/codon_start=1
/transl_table=11
/product="GTPase ObgE"
/protein_id="YP_005761840.1"
/db_xref="GI:384887329"
/db_xref="GeneID:12340725"
/translation="MFVDSVEIIIASGKGGSGMVSFRREKFVIKGGPDGGDGGDGGDV
YFEVDNNTDTLAGFRGTKHHKAKNGAPGGTRNCAGKKGEDKIIVVPPGTQVFVDDKLW
LDLVEPKKRVLALKGGKGGLGNVHFKSATKQQPTYAQKGLEGVEKCVRLELKLIADIG
LVGFPNAGKSTLISTISNAKPKIANYEFTTLVPNLGVVSVDEKSEFLMADIPGIIEGA
SEGKGLGISFLKHIERTKVLAFVLDASRLDLGIKEQYQRLRLELEKFSSALANKPFGV
LLNKCDVVENIDELTKDFCAFLNLEAQKLEAFGLEPYLGFLHPHLTSDFEKHPNEKSA
LFVLPLSSVSALNAHALKFVLLEALP"
misc_feature 326124..327035
/gene="obgE"
/locus_tag="HPKB_0314"
/note="GTPase CgtA; Reviewed; Region: obgE; PRK12299"
/db_xref="CDD:183417"
misc_feature 326127..326588
/gene="obgE"
/locus_tag="HPKB_0314"
/note="GTP1/OBG; Region: GTP1_OBG; pfam01018"
/db_xref="CDD:110047"
misc_feature 326592..327020
/gene="obgE"
/locus_tag="HPKB_0314"
/note="Obg GTPase; Region: Obg; cd01898"
/db_xref="CDD:206685"
misc_feature 326610..326633
/gene="obgE"
/locus_tag="HPKB_0314"
/note="G1 box; other site"
/db_xref="CDD:206685"
misc_feature order(326619..326636,326958..326963,326967..326969)
/gene="obgE"
/locus_tag="HPKB_0314"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206685"
misc_feature 326655..326702
/gene="obgE"
/locus_tag="HPKB_0314"
/note="Switch I region; other site"
/db_xref="CDD:206685"
misc_feature 326691..326693
/gene="obgE"
/locus_tag="HPKB_0314"
/note="G2 box; other site"
/db_xref="CDD:206685"
misc_feature 326751..326762
/gene="obgE"
/locus_tag="HPKB_0314"
/note="G3 box; other site"
/db_xref="CDD:206685"
misc_feature order(326760..326783,326790..326828)
/gene="obgE"
/locus_tag="HPKB_0314"
/note="Switch II region; other site"
/db_xref="CDD:206685"
misc_feature 326958..326969
/gene="obgE"
/locus_tag="HPKB_0314"
/note="G4 box; other site"
/db_xref="CDD:206685"
gene 327248..328243
/locus_tag="HPKB_0315"
/db_xref="GeneID:12340726"
CDS 327248..328243
/locus_tag="HPKB_0315"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761841.1"
/db_xref="GI:384887330"
/db_xref="GeneID:12340726"
/translation="MKRFVLFLSFMCVCVCVQAYAEQDYFFRDFKSTDLPKKLHLDKK
LSQTIQPCAQLNASKHYTSTGVREPDICTKSFKKSALMSYDLALGYLVSKNKQYGLKA
IEILNAWAKELQSVDTYQSEDNINFYMPYMNMAYWFVKKAFPSPEYEDFIKRMCQYSQ
SALNTNHGAWGILFDVSSALALDDHALLHNSANRWQEWVFKAIDENGVIASAITRSDT
SDYHGGPTKGIKGIAYTNFALLALTVSGELLFENGYDLWGSEAGKRLSVAYNKVATWI
LNPETFPYFQPNLIGVHNNAYFIILAKHYSSPSANELLKQGDLHEDGFRLKLRSL"
misc_feature 327404..328093
/locus_tag="HPKB_0315"
/note="Alginate lyase; Region: Alginate_lyase; pfam05426"
/db_xref="CDD:203248"
gene 328490..329044
/locus_tag="HPKB_0316"
/db_xref="GeneID:12340727"
CDS 328490..329044
/locus_tag="HPKB_0316"
/note="Consensus COG by CONSORF: COG2353"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761842.1"
/db_xref="GI:384887331"
/db_xref="GeneID:12340727"
/translation="MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKSKAKTPVNGSF
ESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTF
RNVIEGDHAGSLTAYVRMNEKLVKVPMQYTIAEDKLVVKGVLDLLSFGLKNELASLAK
RCESFHEGLTWSQVEIQFESMIKG"
gene 329054..330346
/locus_tag="HPKB_0317"
/db_xref="GeneID:12340728"
CDS 329054..330346
/locus_tag="HPKB_0317"
/note="Consensus COG by CONSORF: COG0001"
/codon_start=1
/transl_table=11
/product="glutamate-1-semialdehyde aminotransferase"
/protein_id="YP_005761843.1"
/db_xref="GI:384887332"
/db_xref="GeneID:12340728"
/translation="MELLHSINDFNEAKHVIAGGVNSPVRAFKSVKGTPPFILKGKGA
YLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIINVLKKGTSFGAPTELETTLAKEII
SCYEGLDKVRLVNSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHSDSLLVKAGSGCA
TFGSPSSLGVPNDFSKHTLVARYNDLNSTEECFKKGDVGCVIIEPIAGNMGLVPAQKE
FLLGLKALCEKYQAVLILDEVMSGFRASLSGSQEFYGVVPDLVTFGKVIGAGLPLACF
GGRAEIMDLLSPIGGVYQAGTLSGNPLAVCAGLSTLYKIKRDKTLYTRLNALAVRLTQ
GLKKSAQSYNIALETLNRGSMFGFFFNENAVHDFDDALKSDTEMFAKFHQKMLFKGVY
LACSSFETGFICEPMTEEMIDLAVAKADESFDEIIKGV"
misc_feature 329066..330331
/locus_tag="HPKB_0317"
/note="glutamate-1-semialdehyde aminotransferase;
Provisional; Region: PRK00062"
/db_xref="CDD:178834"
misc_feature 329081..330322
/locus_tag="HPKB_0317"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(329399..329407,329483..329488,329492..329494,
329663..329665,329762..329764,329768..329773,
329846..329848)
/locus_tag="HPKB_0317"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(329402..329407,329483..329488,329663..329665,
329762..329764,329771..329773,329846..329848)
/locus_tag="HPKB_0317"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 329846..329848
/locus_tag="HPKB_0317"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 330351..330611
/locus_tag="HPKB_0318"
/db_xref="GeneID:12340729"
CDS 330351..330611
/locus_tag="HPKB_0318"
/note="Consensus COG by CONSORF: COG0477. Candidate starts
by CONSORF: 330339,330351"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761844.1"
/db_xref="GI:384887333"
/db_xref="GeneID:12340729"
/translation="MKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISW
LFWLGVIWGVLASFLNVYKAYKNMQKDYEELAKDPKHTHKTK"
misc_feature 330387..330548
/locus_tag="HPKB_0318"
/note="Putative F0F1-ATPase subunit (ATPase_gene1);
Region: ATPase_gene1; pfam09527"
/db_xref="CDD:204263"
gene 330632..331036
/locus_tag="HPKB_0319"
/db_xref="GeneID:12340730"
CDS 330632..331036
/locus_tag="HPKB_0319"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761845.1"
/db_xref="GI:384887334"
/db_xref="GeneID:12340730"
/translation="MCQIKCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVA
LSSYYGVKKRLDLRRQNSGEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGALLF
LHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF"
gene 331120..332004
/locus_tag="HPKB_0320"
/db_xref="GeneID:12340731"
CDS 331120..332004
/locus_tag="HPKB_0320"
/note="Consensus COG by CONSORF: COG0388"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761846.1"
/db_xref="GI:384887335"
/db_xref="GeneID:12340731"
/translation="MKTKNPAKRILKTAVIQMQSKPYALSENLQLALNLAKEAHNKGA
NLIVLPELFDSGYCVNDKDAEFGIDLKAIEHGGKTLKNESLSALSGFAKFNKVHLVAC
SIEKTDKKLYDSAYIIPPKGGIVGKHRKIYLWGDEKSRFKRGKKYEVFTLDFGDFSAK
VGLQICYEIGFGVGANLLALQGVEILIYPSAFGKARAYNWDLLSKARALENGCFVCAC
NHSGEETNAQLKQTLEFAGDSRIIAPNGKIIAQATKLNEVIIAEMDLNEVALQRQKIP
YLQDFDTKLTKKGFGKLT"
misc_feature 331144..331965
/locus_tag="HPKB_0320"
/note="Predicted amidohydrolase [General function
prediction only]; Region: COG0388"
/db_xref="CDD:30737"
misc_feature 331159..331965
/locus_tag="HPKB_0320"
/note="Nitrilase superfamily, including nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes;
Region: nitrilase; cd07197"
/db_xref="CDD:143587"
misc_feature order(331270..331272,331507..331509,331519..331521,
331528..331530,331615..331620,331624..331629,
331690..331692)
/locus_tag="HPKB_0320"
/note="active site"
/db_xref="CDD:143587"
misc_feature order(331270..331272,331507..331509,331615..331617)
/locus_tag="HPKB_0320"
/note="catalytic triad [active]"
/db_xref="CDD:143587"
misc_feature order(331510..331521,331525..331527,331546..331554,
331618..331620,331624..331638,331645..331650,
331723..331728,331732..331740,331744..331749,
331828..331833,331954..331965)
/locus_tag="HPKB_0320"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143587"
gene 332017..332898
/locus_tag="HPKB_0321"
/db_xref="GeneID:12340732"
CDS 332017..332898
/locus_tag="HPKB_0321"
/note="Consensus COG by CONSORF: COG0726"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761847.1"
/db_xref="GI:384887336"
/db_xref="GeneID:12340732"
/translation="MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIP
RLLKLFKKYHLPATWFAPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIAMSAKQEE
DVLLKSIELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYFVR
VGDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVS
PHDIGQMWIDQFDWVYREMDYAVFSMTIHPDVSARPQVLLMHEKIIEHINKHDGVRWV
TFNEIADDFLKRSPRKK"
misc_feature 332035..332874
/locus_tag="HPKB_0321"
/note="Catalytic domain of Helicobacter pylori
peptidoglycan deacetylase (HpPgdA) and similar proteins;
Region: CE4_HpPgdA_like; cd10938"
/db_xref="CDD:200563"
misc_feature order(332050..332052,332056..332058,332272..332274,
332284..332286,332755..332757)
/locus_tag="HPKB_0321"
/note="active site"
/db_xref="CDD:200563"
misc_feature order(332056..332058,332755..332757)
/locus_tag="HPKB_0321"
/note="catalytic site [active]"
/db_xref="CDD:200563"
misc_feature order(332056..332058,332272..332274,332284..332286)
/locus_tag="HPKB_0321"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:200563"
misc_feature order(332074..332079,332101..332106,332110..332118,
332122..332127,332137..332139,332149..332151,
332206..332208,332215..332223,332278..332283,
332287..332292,332299..332304,332311..332316,
332323..332328,332335..332337,332395..332400,
332404..332406,332458..332478,332599..332607,
332620..332628,332632..332640,332686..332691,
332698..332703,332710..332712,332773..332781,
332785..332790,332797..332799)
/locus_tag="HPKB_0321"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:200563"
misc_feature <332140..332661
/locus_tag="HPKB_0321"
/note="Predicted xylanase/chitin deacetylase [Carbohydrate
transport and metabolism]; Region: CDA1; COG0726"
/db_xref="CDD:31070"
gene 332945..333304
/locus_tag="HPKB_0322"
/db_xref="GeneID:12340733"
CDS 332945..333304
/locus_tag="HPKB_0322"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761848.1"
/db_xref="GI:384887337"
/db_xref="GeneID:12340733"
/translation="MCVLCGELIRSFHWTDSYENDENLKGQNALISANENARERKRAR
LKRVRLLNQILAFYGLKMDDWQGAKFVLRDKKGQSVIVNDLGDLWDKAQKLAKKEMDA
LDSHLLAFLNQNTNAIH"
gene 333304..334269
/locus_tag="HPKB_0323"
/db_xref="GeneID:12340734"
CDS 333304..334269
/locus_tag="HPKB_0323"
/note="Consensus COG by CONSORF: COG0523"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761849.1"
/db_xref="GI:384887338"
/db_xref="GeneID:12340734"
/translation="MPKIPITLITGFLGSGKTSFLSEYLNQIDHQGVALIINEIGQAA
LDQRILSVQYCGEKMLYLNAGCVCCNKRMDLVESLKATLNNYDGRGEILKRIIIETTG
LANPAPILWTILSDTFLGVHFKIQSVVVCVDALNARMHLTNNEAKEQIVFADSVLLTK
TDLQNDSAALIKLKERLQSINPSAEIFDKKNIHYESLFSRKNRAQNFMPRMPKDSHSQ
GFETLSINFEGAMEWSAFGIWLSLLLHKYGTQILRIKGIIDIGSSFLVSINGVMHIIY
PPKHILKDQNGSNLVFIMHHLEREKILNSLKGFKDFLGIKGFETQ"
misc_feature 333313..334230
/locus_tag="HPKB_0323"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:30869"
misc_feature 333316..333867
/locus_tag="HPKB_0323"
/note="CobW/HypB/UreG, nucleotide-binding domain; Region:
cobW; pfam02492"
/db_xref="CDD:202255"
misc_feature 333961..334230
/locus_tag="HPKB_0323"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; pfam07683"
/db_xref="CDD:203723"
gene complement(334275..335420)
/locus_tag="HPKB_0324"
/db_xref="GeneID:12340735"
CDS complement(334275..335420)
/locus_tag="HPKB_0324"
/note="Consensus COG by CONSORF: COG0477. Candidate starts
by CONSORF: 335450,335435,335420"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily transporter"
/protein_id="YP_005761850.1"
/db_xref="GI:384887339"
/db_xref="GeneID:12340735"
/translation="MRVFVCFLGVFVSNGLARFGYVVLIPLLILSGSLTPHQSFQLGI
AVLMGYVFGSFLIQFLSPLISLESIAKISFGLIALSFLICYFDSIPFFWLWIWRFIAG
VASSALMILVAPLSLPYVKENKKALVGGFIFSAVGIGSVFSGFVLPWISSYNIKWAWI
FLGGSCLIAFILSLIGLKNHSLKKKSVKKEESAFKIPFHLWLLLISCALNAIGFLPHT
LFWVDYLIRHLNISPTTAGTSWALFGFGATLGSLISGPMAQKLGAKNANIFILILKSI
ACFLPIFFHQISLLNLSIFIMGAATTANINLFSMMALKIAGAKHFAKASSWVVFSFGI
FQALFSYLFTIFLGDLGYLLIFVICGVCLVLSFIVLFPIKMQTAVNK"
misc_feature complement(334299..335420)
/locus_tag="HPKB_0324"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:32643"
misc_feature complement(334308..335411)
/locus_tag="HPKB_0324"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(334413..334415,334422..334427,
334434..334439,334446..334451,334482..334484,
334491..334496,334506..334508,334515..334520,
334527..334529,334668..334670,334680..334682,
334689..334691,334701..334703,334713..334715,
334755..334757,334764..334769,334776..334781,
334788..334790,335001..335003,335019..335024,
335031..335036,335070..335072,335079..335084,
335091..335096,335103..335108,335247..335252,
335256..335261,335271..335273,335280..335285,
335292..335294,335343..335348,335352..335360,
335367..335369))
/locus_tag="HPKB_0324"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(335816..336571)
/locus_tag="HPKB_0325"
/db_xref="GeneID:12340736"
CDS complement(335816..336571)
/locus_tag="HPKB_0325"
/note="Consensus COG by CONSORF: COG0748"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761851.1"
/db_xref="GI:384887340"
/db_xref="GeneID:12340736"
/translation="MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDSQGVV
IGYNNNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKEGFDSVC
LATLHPNGHVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKHNPHNVEVMFLEDESKAKS
AILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRTMQDFHLIALDFKEG
RFVKGFGQAYDILGDKIAYVGGKGNPHDFAHKK"
misc_feature complement(335837..336562)
/locus_tag="HPKB_0325"
/note="heme oxygenase, HugZ family; Region: heme_ox_HugZ;
TIGR04109"
/db_xref="CDD:200360"
misc_feature complement(336350..336562)
/locus_tag="HPKB_0325"
/note="Protein of unknown function (DUF2470); Region:
DUF2470; pfam10615"
/db_xref="CDD:204534"
misc_feature complement(335873..336304)
/locus_tag="HPKB_0325"
/note="Pyridoxine 5'-phosphate (PNP) oxidase-like
proteins; Region: PNPOx_like; cl00381"
/db_xref="CDD:212207"
gene complement(336632..338257)
/gene="argS"
/locus_tag="HPKB_0326"
/db_xref="GeneID:12340737"
CDS complement(336632..338257)
/gene="argS"
/locus_tag="HPKB_0326"
/note="Consensus COG by CONSORF: COG0018"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_005761852.1"
/db_xref="GI:384887341"
/db_xref="GeneID:12340737"
/translation="MHTFIKGVLEEILEEEVIIEYPKDREHGHYATPIAFNLAKVFKK
SPLIIAEELALKISTHEKTQGLFDSVVACKGYINFTLSLDFLERSTQKALELKEKFGS
QPKSEYSQKIFLEFVSANPTGPLHIGHARGAVFGDSLAKIARFLGHEVLCEYYVNDMG
SQIRLLGLSVWLAYREHVLQESVTYPEVFYKGEYIIEIAKKANNDLEPSLFKENEETI
IEVLSGYAKDLMLLEIKDNLDALGIHFDSYASEREIFKHKDAVFERLEKANALYEKDS
KIWLKSSLYQDESDRVLIKEDKSYTYLAGDIVYHDEKFKQNYAKYINIWGADHHGYIA
RVKASLEFLGYDSNKLEVLLAQMVRLLKDNEPYKMSKRAGNFILIKDVIDDVGKDALR
FIFLSKRLDTHLEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEILQTPLT
HLNAEEKYLLFSALSLPKIIESSFEEYGLQKICEYAKTLASEFHRFYNAGKILNTPKA
KELLKICLMVSLSLSNAFKLLGIEIKTKISAKD"
misc_feature complement(338015..>338197)
/gene="argS"
/locus_tag="HPKB_0326"
/note="Arginyl tRNA synthetase N terminal dom; Region:
Arg_tRNA_synt_N; smart01016"
/db_xref="CDD:198084"
misc_feature complement(336647..338194)
/gene="argS"
/locus_tag="HPKB_0326"
/note="arginyl-tRNA synthetase; Region: argS; TIGR00456"
/db_xref="CDD:161886"
misc_feature complement(337136..337927)
/gene="argS"
/locus_tag="HPKB_0326"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature complement(order(337262..337264,337271..337273,
337340..337342,337352..337354,337871..337873,
337880..337882,337898..337900,337904..337906,
337913..337915))
/gene="argS"
/locus_tag="HPKB_0326"
/note="active site"
/db_xref="CDD:185675"
misc_feature complement(337871..337882)
/gene="argS"
/locus_tag="HPKB_0326"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature complement(337142..337153)
/gene="argS"
/locus_tag="HPKB_0326"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature complement(336662..337108)
/gene="argS"
/locus_tag="HPKB_0326"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:212339"
misc_feature complement(order(336767..336769,336776..336778,
336785..336787,336806..336808,336959..336964,
336968..336973,336983..336985,337010..337012,
337019..337021,337031..337033))
/gene="argS"
/locus_tag="HPKB_0326"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature complement(order(336767..336769,336959..336964,
336971..336976,336983..336985))
/gene="argS"
/locus_tag="HPKB_0326"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene complement(338260..338499)
/locus_tag="HPKB_0327"
/db_xref="GeneID:12340738"
CDS complement(338260..338499)
/locus_tag="HPKB_0327"
/note="Consensus COG by CONSORF: COG1826"
/codon_start=1
/transl_table=11
/product="sec-independent protein translocase protein"
/protein_id="YP_005761853.1"
/db_xref="GI:384887342"
/db_xref="GeneID:12340738"
/translation="MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAV
KDDEEEAKNEPKTLDAQAAQTKVHETSEIKSKQES"
misc_feature complement(338272..338499)
/locus_tag="HPKB_0327"
/note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788"
/db_xref="CDD:214092"
gene complement(338569..339189)
/gene="gmk"
/locus_tag="HPKB_0328"
/db_xref="GeneID:12340739"
CDS complement(338569..339189)
/gene="gmk"
/locus_tag="HPKB_0328"
/note="Consensus COG by CONSORF: COG0194"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_005761854.1"
/db_xref="GI:384887343"
/db_xref="GeneID:12340739"
/translation="MHNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPR
EGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDI
DVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLE
SFDYLIINEDLEKSKEIILSIAKTLVYRLKAFNFEKICKAWKNESL"
misc_feature complement(338605..339174)
/gene="gmk"
/locus_tag="HPKB_0328"
/note="Guanylate kinase [Nucleotide transport and
metabolism]; Region: Gmk; COG0194"
/db_xref="CDD:223272"
misc_feature complement(338671..339171)
/gene="gmk"
/locus_tag="HPKB_0328"
/note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine triphosphate
(ATP) to guanosine monophosphate (GMP) to yield adenosine
diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
/db_xref="CDD:238026"
misc_feature complement(order(338947..338949,338962..338964,
339031..339033,339058..339060,339067..339069,
339088..339090,339136..339138,339154..339156))
/gene="gmk"
/locus_tag="HPKB_0328"
/note="catalytic site [active]"
/db_xref="CDD:238026"
misc_feature complement(order(339136..339138,339154..339156))
/gene="gmk"
/locus_tag="HPKB_0328"
/note="G-X2-G-X-G-K; other site"
/db_xref="CDD:238026"
gene complement(339182..340495)
/locus_tag="HPKB_0329"
/db_xref="GeneID:12340740"
CDS complement(339182..340495)
/locus_tag="HPKB_0329"
/codon_start=1
/transl_table=11
/product="internalin protein"
/protein_id="YP_005761855.1"
/db_xref="GI:384887344"
/db_xref="GeneID:12340740"
/translation="MKMILFNQNPMITKLLESVSKKLELSMENFNRYQELSTRLKEDS
EWILIADDECLEKLDQVDWLELKETISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFL
PTEVLKVLQKKLGSNMSELEPSQNLDPTQEVLETHWDELENLGDLEALVQEEPNNEEQ
LLPTLNDQEEKEEVKETPQEEKPKDDETQEGETLKNEEVSKELETQEEIKEETQEQAK
EQEPIKEETQEEVKEETQEEIKEETQEEIKEETQEIKEEKQEKTQDSPSVQELEAMQE
LVKEIQENSNGQENKKETQESAETPQETPQEKETQKLETPQEEIQENAEKTQKLETQE
DHYESIEDIPEPVMAQAMGEELPFLNESVAKIPNNENDTETPKESVIKTPQEKEESDK
TSSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKPDA"
gene 340637..341179
/locus_tag="HPKB_0330"
/db_xref="GeneID:12340741"
CDS 340637..341179
/locus_tag="HPKB_0330"
/note="Consensus COG by CONSORF: COG1502. Candidate starts
by CONSORF: 340634,340637"
/codon_start=1
/transl_table=11
/product="putative endonuclease"
/protein_id="YP_005761856.1"
/db_xref="GI:384887345"
/db_xref="GeneID:12340741"
/translation="MLNKFKKIVGVGVLVGCLGVLQAKNSLFVLPYEQKDALNSLVSG
ISNARESVKIAIYSFTHRDIARAIKSVASKGIKVQIIYDYGSNHSNNQSTIGYLDKYP
NTKVCLLKGLKAKNGNYYGIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDT
ETILKAKSYYQKMLGSCVGF"
misc_feature 340646..341176
/locus_tag="HPKB_0330"
/note="nuclease NucT; Provisional; Region: PRK13912"
/db_xref="CDD:184389"
misc_feature 340718..341155
/locus_tag="HPKB_0330"
/note="Catalytic domain of EDTA-resistant nuclease Nuc,
vertebrate phospholipase D6, and similar proteins; Region:
PLDc_Nuc_like; cd09116"
/db_xref="CDD:197215"
misc_feature order(341006..341008,341012..341014,341051..341053,
341057..341059,341090..341092)
/locus_tag="HPKB_0330"
/note="putative active site [active]"
/db_xref="CDD:197215"
misc_feature 341006..341008
/locus_tag="HPKB_0330"
/note="catalytic site [active]"
/db_xref="CDD:197215"
gene complement(341186..341923)
/locus_tag="HPKB_0331"
/db_xref="GeneID:12340742"
CDS complement(341186..341923)
/locus_tag="HPKB_0331"
/note="Candidate starts by CONSORF: 341950,341938,341923"
/codon_start=1
/transl_table=11
/product="outer membrane protein HorC"
/protein_id="YP_005761857.1"
/db_xref="GI:384887346"
/db_xref="GeneID:12340742"
/translation="MRTLLKMLVGASLLTHALIAKEESAAPSWTKNLYMGVNYQTGSI
NLMTNIHEVREITNYQTGYTNIITSVNSVKKLTNMGSNGIGLVMGYKHFFHPDKILGL
RYFAFLDWQGYGMRYPKGYYGGNNMITYGVGVDAMWNFFQGSFYQDDISVDIGVFGGI
AIAGNSWYIGNKGQELLGITNSSAVDNTSFQFLFNFGFKALFVDEHEFEIGFKFPTIN
NKYYTTDALKVQMRRVFAFYVGYNYHF"
misc_feature complement(341189..341671)
/locus_tag="HPKB_0331"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 342053..342766
/gene="flgH"
/locus_tag="HPKB_0332"
/db_xref="GeneID:12340743"
CDS 342053..342766
/gene="flgH"
/locus_tag="HPKB_0332"
/note="Consensus COG by CONSORF: COG2063"
/codon_start=1
/transl_table=11
/product="flagellar basal body L-ring protein"
/protein_id="YP_005761858.1"
/db_xref="GI:384887347"
/db_xref="GeneID:12340743"
/translation="MKKALYLGAVAFSVAFSMASANEPKIDFNPPSYVEETPSKEFIP
ELNKLGSLFGQGERPLFADRRAMKPNDLITIIVSEKASANYSSSKDYKSASGGNSTPP
RLTYNGLDERKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKV
LENGNYFIYGNKEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHL
SDSNKKKFAADAMETQMPY"
misc_feature 342116..342754
/gene="flgH"
/locus_tag="HPKB_0332"
/note="Flagellar basal body L-ring protein [Cell motility
and secretion]; Region: FlgH; COG2063"
/db_xref="CDD:224974"
misc_feature 342122..342763
/gene="flgH"
/locus_tag="HPKB_0332"
/note="flagellar basal body L-ring protein; Reviewed;
Region: flgH; PRK00249"
/db_xref="CDD:234700"
gene 342784..343467
/locus_tag="HPKB_0333"
/db_xref="GeneID:12340744"
CDS 342784..343467
/locus_tag="HPKB_0333"
/codon_start=1
/transl_table=11
/product="CMP-N-acetylneuraminic acid synthetase"
/protein_id="YP_005761859.1"
/db_xref="GI:384887348"
/db_xref="GeneID:12340744"
/translation="MRAIAVVLARSSSKRIKNKNIIDFFNKPMLAYPIEAALNSKLFE
KVFISSDSMEYVNLAKNYGASFLDLRPKVLAHDRATTLEVMAYHMKELELKDEDVACC
LYGTSALLQEKHLKNAFETLKENTDYVFTCSPFSASPYRSFSLENGVQMAFKEHSNTR
TQDLKTLYHDAGLLYMGKAQAFKEMRPIFSPNSIALELSPLEVQDIDTLEDLELAKLK
YSRLKNACQ"
misc_feature 342787..343428
/locus_tag="HPKB_0333"
/note="CMP-NeuAc_Synthase activates N-acetylneuraminic
acid by adding CMP moiety; Region: CMP-NeuAc_Synthase;
cd02513"
/db_xref="CDD:133006"
misc_feature order(342805..342813,342823..342825,342841..342843,
342991..342993,343003..343005,343024..343026,
343093..343095,343099..343101,343291..343293,
343306..343308,343402..343404)
/locus_tag="HPKB_0333"
/note="ligand binding site; other site"
/db_xref="CDD:133006"
misc_feature order(342850..342852,342856..342861,343171..343173,
343183..343188,343282..343293,343306..343308,
343360..343362,343366..343368,343402..343404,
343411..343416,343423..343425)
/locus_tag="HPKB_0333"
/note="tetramer interface; other site"
/db_xref="CDD:133006"
gene 343458..344330
/locus_tag="HPKB_0334"
/db_xref="GeneID:12340745"
CDS 343458..344330
/locus_tag="HPKB_0334"
/codon_start=1
/transl_table=11
/product="CMP-N-acetylneuraminic acid synthetase"
/protein_id="YP_005761860.1"
/db_xref="GI:384887349"
/db_xref="GeneID:12340745"
/translation="MPVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKADLYSHKQNN
ISAFLEGVGNDDFLIIDSYCLNSKDFYLLKEKTKSLMVIEDKEHAKGFYPKNTKIMNF
TLNALKHYHHLSKDYQYYLGVGFYPVDMRFVYERPINTENKEVLITLGGSEQKTLKEI
VKILENKGMHLHIISPYIPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYEL
ALSQMPSLIIPIASNQIIQSQEFESLGIFKQTSLKTLAKDFENLQIQKNQAWAKNLAF
GSELEGALREFLEI"
misc_feature 343458..344327
/locus_tag="HPKB_0334"
/note="Spore coat polysaccharide biosynthesis protein,
predicted glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: spsG; COG3980"
/db_xref="CDD:33760"
gene complement(344802..345740)
/gene="lpxK"
/locus_tag="HPKB_0335"
/db_xref="GeneID:12340746"
CDS complement(344802..345740)
/gene="lpxK"
/locus_tag="HPKB_0335"
/note="Consensus COG by CONSORF: COG1663"
/codon_start=1
/transl_table=11
/product="tetraacyldisaccharide 4'-kinase"
/protein_id="YP_005761861.1"
/db_xref="GI:384887350"
/db_xref="GeneID:12340746"
/translation="MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTA
KKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEVAIVSRGYQRDSKGLVVVSVKGN
ILVPQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGSKIVFLDDGFRFNFNQF
NALLKPKVPPYYPFCLPSGLYRESIKSYKEAHLIITEDKDYQRITSISRPTKRMLLVT
AIANPSRLDAFLPKEVVKKLYFRDHAPFDLELLEKEFYQNNATSLLVTSKDLVKLQDC
KLPLSVLDLKLEICPKVLEEIDRYILSYPCNTKERL"
misc_feature complement(344805..345731)
/gene="lpxK"
/locus_tag="HPKB_0335"
/note="Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope
biogenesis, outer membrane]; Region: LpxK; COG1663"
/db_xref="CDD:31849"
misc_feature complement(344838..345728)
/gene="lpxK"
/locus_tag="HPKB_0335"
/note="tetraacyldisaccharide 4'-kinase; Reviewed; Region:
lpxK; PRK00652"
/db_xref="CDD:179082"
gene complement(345737..346519)
/gene="nadE"
/locus_tag="HPKB_0336"
/db_xref="GeneID:12340747"
CDS complement(345737..346519)
/gene="nadE"
/locus_tag="HPKB_0336"
/note="Consensus COG by CONSORF: COG0171"
/codon_start=1
/transl_table=11
/product="NH(3)-dependent NAD+ synthetase"
/protein_id="YP_005761862.1"
/db_xref="GI:384887351"
/db_xref="GeneID:12340747"
/translation="MQKDYQKLIVYLCDFLEKEAQKRGFKKVVYGLSGGLDSAVVGVL
CQKVFKENAHALLMPSSVSMPENKTDALNLCETFSIPYTEYSIAPYDKIFGSHFKDAS
LTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELF
KTEVYELARHLNIPKKILNKPPSADLFVGQSDEQDLGYPYSVIDPLLKDIEALFQTKP
IDAETLTQLGHDEILVKNIISRIQKNAFKLELPAIAKRFNPK"
misc_feature complement(345779..346513)
/gene="nadE"
/locus_tag="HPKB_0336"
/note="NAD+ synthase is a homodimer, which catalyzes the
final step in de novo nicotinamide adenine dinucleotide
(NAD+) biosynthesis, an amide transfer from either ammonia
or glutamine to nicotinic acid adenine dinucleotide
(NaAD). The conversion of NaAD to NAD...; Region:
NAD_synthase; cd00553"
/db_xref="CDD:30166"
misc_feature complement(345767..346498)
/gene="nadE"
/locus_tag="HPKB_0336"
/note="NAD synthase; Region: NAD_synthase; pfam02540"
/db_xref="CDD:202275"
misc_feature complement(order(345782..345784,346046..346051,
346058..346075,346082..346087,346148..346153,
346157..346165,346169..346177,346181..346186,
346193..346195,346205..346207,346244..346249,
346256..346261,346268..346279,346463..346468,
346475..346477,346484..346489))
/gene="nadE"
/locus_tag="HPKB_0336"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:30166"
misc_feature complement(order(345779..345784,345935..345937,
345962..345964,345968..345973,346076..346078,
346085..346096,346109..346111,346124..346126,
346178..346180,346184..346189,346196..346198,
346208..346210,346346..346354,346406..346408,
346421..346432))
/gene="nadE"
/locus_tag="HPKB_0336"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:30166"
misc_feature complement(order(345971..345976,346037..346039,
346124..346126,346178..346180,346346..346351,
346406..346411,346421..346429))
/gene="nadE"
/locus_tag="HPKB_0336"
/note="ATP binding pocket [chemical binding]; other site"
/db_xref="CDD:30166"
misc_feature complement(order(345971..345973,346109..346111,
346409..346411,346421..346423))
/gene="nadE"
/locus_tag="HPKB_0336"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:30166"
misc_feature complement(order(345932..345955,345962..345985,
346325..346327))
/gene="nadE"
/locus_tag="HPKB_0336"
/note="active-site loop [active]"
/db_xref="CDD:30166"
gene 346604..346680
/gene="trnR"
/locus_tag="HPKB_0337"
/db_xref="GeneID:12340748"
tRNA 346604..346680
/gene="trnR"
/locus_tag="HPKB_0337"
/product="tRNA-Arg"
/db_xref="GeneID:12340748"
gene 346767..347759
/gene="ilvC"
/locus_tag="HPKB_0338"
/db_xref="GeneID:12340749"
CDS 346767..347759
/gene="ilvC"
/locus_tag="HPKB_0338"
/note="Consensus COG by CONSORF: COG0059. Candidate starts
by CONSORF: 346761,346767"
/codon_start=1
/transl_table=11
/product="ketol-acid reductoisomerase"
/protein_id="YP_005761863.1"
/db_xref="GI:384887352"
/db_xref="GeneID:12340749"
/translation="MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVRV
RIGLYQGSLSASKAKAEGFEVLEVKELVQSSDVIIALLPDELHKEVLEKEVIPFLKEG
QIVGFAHGFSVHFNQVVLPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQENSK
NNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIK
AGYPEELAYFECVHEVKLVADLLHHKGVEGLRKHISNTAEFGAIKAREPMGSLLEKRM
QKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRTPFNHKK"
misc_feature 346779..347756
/gene="ilvC"
/locus_tag="HPKB_0338"
/note="ketol-acid reductoisomerase; Provisional; Region:
PRK05479"
/db_xref="CDD:180113"
misc_feature 346809..347306
/gene="ilvC"
/locus_tag="HPKB_0338"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvN; pfam07991"
/db_xref="CDD:116601"
misc_feature 347322..347756
/gene="ilvC"
/locus_tag="HPKB_0338"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvC; pfam01450"
/db_xref="CDD:110451"
gene 347778..348584
/gene="minD"
/locus_tag="HPKB_0339"
/db_xref="GeneID:12340750"
CDS 347778..348584
/gene="minD"
/locus_tag="HPKB_0339"
/note="Consensus COG by CONSORF: COG2894"
/codon_start=1
/transl_table=11
/product="cell division inhibitor"
/protein_id="YP_005761864.1"
/db_xref="GI:384887353"
/db_xref="GeneID:12340750"
/translation="MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLR
NLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKV
AILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIID
AKSNRAKKGMEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISA
TNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKKGFFSALKGIFS"
misc_feature 347838..348578
/gene="minD"
/locus_tag="HPKB_0339"
/note="septum site-determining protein MinD; Region:
minD_bact; TIGR01968"
/db_xref="CDD:131023"
misc_feature 347838..348485
/gene="minD"
/locus_tag="HPKB_0339"
/note="Bacterial cell division requires the formation of a
septum at mid-cell. The site is determined by the min
operon products MinC, MinD and MinE. MinC is a nonspecific
inhibitor of the septum protein FtsZ. MinE is the
supressor of MinC. MinD plays a pivotal...; Region: MinD;
cd02036"
/db_xref="CDD:73299"
misc_feature 347889..347897
/gene="minD"
/locus_tag="HPKB_0339"
/note="Switch I; other site"
/db_xref="CDD:73299"
misc_feature 348132..348146
/gene="minD"
/locus_tag="HPKB_0339"
/note="Switch II; other site"
/db_xref="CDD:73299"
gene 348581..348814
/gene="minE"
/locus_tag="HPKB_0340"
/db_xref="GeneID:12340751"
CDS 348581..348814
/gene="minE"
/locus_tag="HPKB_0340"
/note="Consensus COG by CONSORF: COG0851"
/codon_start=1
/transl_table=11
/product="cell division topological specificity factor
MinE"
/protein_id="YP_005761865.1"
/db_xref="GI:384887354"
/db_xref="GeneID:12340751"
/translation="MSLFDFFKNKGSAAIATDRLKLILAKERTLNLPYMEEMRKEIIA
VIQKYTKSSDIHFKTLDSNQSVETIEVEIILPK"
misc_feature 348581..348811
/gene="minE"
/locus_tag="HPKB_0340"
/note="cell division topological specificity factor MinE;
Reviewed; Region: minE; PRK00296"
/db_xref="CDD:178966"
gene 348826..349626
/locus_tag="HPKB_0341"
/db_xref="GeneID:12340752"
CDS 348826..349626
/locus_tag="HPKB_0341"
/note="Consensus COG by CONSORF: COG0758"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761866.1"
/db_xref="GI:384887355"
/db_xref="GeneID:12340752"
/translation="MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAI
IGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPTTIMLSPCSLDL
IYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLQSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGHAQGIFNIQNFINTLLKDYHLKE
MPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA"
misc_feature 348826..349455
/locus_tag="HPKB_0341"
/note="DNA protecting protein DprA; Region: dprA;
TIGR00732"
/db_xref="CDD:129815"
misc_feature <348856..349605
/locus_tag="HPKB_0341"
/note="Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion];
Region: Smf; COG0758"
/db_xref="CDD:31101"
gene 349623..350027
/locus_tag="HPKB_0342"
/db_xref="GeneID:12340753"
CDS 349623..350027
/locus_tag="HPKB_0342"
/note="Consensus COG by CONSORF: COG0816"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase-like protein"
/protein_id="YP_005761867.1"
/db_xref="GI:384887356"
/db_xref="GeneID:12340753"
/translation="MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLL
REKNIQVLVVGKPNESYADTNARIEHFIKLLDFEGEIVFINEDRSSIEAYENLEHLGK
KNKRLAIKDGRLDSLSACRILERYCQQVLKNH"
misc_feature 349623..350009
/locus_tag="HPKB_0342"
/note="Holliday junction resolvase-like protein; Reviewed;
Region: PRK00109"
/db_xref="CDD:178870"
gene 350135..350467
/locus_tag="HPKB_0343"
/db_xref="GeneID:12340754"
CDS 350135..350467
/locus_tag="HPKB_0343"
/note="Consensus COG by CONSORF: COG0790"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761868.1"
/db_xref="GI:384887357"
/db_xref="GeneID:12340754"
/translation="MCLLGGGLMAKPNPKELFNLGMLSYDKQDFTQAKKYFEKACELN
NSGGCDSLGMLYENDQGVEKNLIKAAYFYSKACDLNNGLGVWCFRKSISKWGRGETGL
KKSRSILL"
misc_feature 350174..350266
/locus_tag="HPKB_0343"
/note="Tetratricopeptide repeat; Region: TPR_2; pfam07719"
/db_xref="CDD:191825"
misc_feature <350213..>350380
/locus_tag="HPKB_0343"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 350288..350377
/locus_tag="HPKB_0343"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene 350816..351121
/locus_tag="HPKB_0344"
/db_xref="GeneID:12340755"
CDS 350816..351121
/locus_tag="HPKB_0344"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761869.1"
/db_xref="GI:384887358"
/db_xref="GeneID:12340755"
/translation="MKIMHQVRDFLDSCKQTIQKNSNEVFQKTKRAFFKEESQKIREQ
AVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK"
misc_feature <350966..351094
/locus_tag="HPKB_0344"
/note="TRAP-type mannitol/chloroaromatic compound
transport system, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: FcbT1; COG4663"
/db_xref="CDD:227009"
gene 351105..351665
/locus_tag="HPKB_0345"
/db_xref="GeneID:12340756"
CDS 351105..351665
/locus_tag="HPKB_0345"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761870.1"
/db_xref="GI:384887359"
/db_xref="GeneID:12340756"
/translation="MSKENSFISGLMGFFSEKNERWLLAHRHTRGFVIVAWLFRFKSI
AFSILITLLVIWVDIWVYSDVRQFLLDTSSSFVWLLSALLIKWGVIVISVRKCYQFSQ
KMFAIIQKKRRIRENLKNRPNPLDTKNSLKERLSSVTEEIIAKKQEETQRQEAPEDTH
ERLSSVTEEMILKKQEELRSKKERSD"
gene 351721..352095
/locus_tag="HPKB_0346"
/db_xref="GeneID:12340757"
CDS 351721..352095
/locus_tag="HPKB_0346"
/note="Consensus COG by CONSORF: COG3772. Candidate starts
by CONSORF: 351676,351694,351715,351721"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761871.1"
/db_xref="GI:384887360"
/db_xref="GeneID:12340757"
/translation="MDSEGFSPSVYADKTGHPTIGYGYNLSVYSYESKRITKAYGLLT
DILKENHRALLSYGWYKNLDAMRRMVILDLSYNLGLSGLFKFKQFIKAIEDKNYDLAV
ERLQKSPYFNQVKKERQGIWRF"
misc_feature 351730..351732
/locus_tag="HPKB_0346"
/note="catalytic residue [active]"
/db_xref="CDD:29558"
misc_feature 351769..352080
/locus_tag="HPKB_0346"
/note="Phage lysozyme; Region: Phage_lysozyme; pfam00959"
/db_xref="CDD:201528"
gene 352083..352349
/locus_tag="HPKB_0347"
/db_xref="GeneID:12340758"
CDS 352083..352349
/locus_tag="HPKB_0347"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761872.1"
/db_xref="GI:384887361"
/db_xref="GeneID:12340758"
/translation="MEILKLGGCEKHCKKKYMIEKVIKEVGLELKSKSVMPYFFNEYD
LTKNANREEPKRLRSQIISILMKTPKGREILKEYLNEGCILLGE"
gene 353025..353810
/locus_tag="HPKB_0348"
/db_xref="GeneID:12340759"
CDS 353025..353810
/locus_tag="HPKB_0348"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761873.1"
/db_xref="GI:384887362"
/db_xref="GeneID:12340759"
/translation="MFCCFKTILGTSVIVGVLLGLWRWTYDKSCFSLVFVLLILGIVA
CSYISLKMHQRKCFVKCFVNKKSYLFKMLHSPIMVSCFYFIFSIFTSISIAYSVLDYN
WMMWGLVFCTIVVCVAVFGTLEKMLKSIIKEDYLMLISREVSAFVGTLFFIGLSCYVI
YHGNMPDYLRPALIDTIKAASDSAYSNCDYTSYVLEFKKMLEGFAWWGMFKAESMGLN
KGFMVAGWVAFIIYNALSGIAISRLSAQIIYCLSKCIRGECGK"
gene 353987..355021
/locus_tag="HPKB_0349"
/db_xref="GeneID:12340760"
CDS 353987..355021
/locus_tag="HPKB_0349"
/note="Candidate starts by CONSORF: 353978,353987"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761874.1"
/db_xref="GI:384887363"
/db_xref="GeneID:12340760"
/translation="MSSILASNSLRIANPVRRQKTARTQKIIKPAKRYIEKFLPTDII
KDNLNNHQAEINATLNSGIEEMNGKINTQIDGFFDQVENNVDKFLDWHYSIKGDYSEL
ALFAAKKIGLSAEDAVANVLQEKLLGKDYKQRLDAITKRLSKTYASLLNQHEKFVSET
ALKGVDTDLSQNAKILDTLGDEVARKLKANFTGTIGATAGVSGLAIAVKLTPKLVAKI
GAKLGAKVGGKFLAKIGTALSGSWTCGSFAPACAITLWFGSDAVINFIDEWLHRDDFK
KEILNNINEVKENLKNSYKQQFNDSFVKISQELQESFKNAPVVEKKTIKEHIGDLKQT
PEENNQKINQ"
gene complement(355015..355911)
/locus_tag="HPKB_0350"
/db_xref="GeneID:12340761"
CDS complement(355015..355911)
/locus_tag="HPKB_0350"
/note="Consensus COG by CONSORF: COG0564"
/codon_start=1
/transl_table=11
/product="RNA pseudouridine synthase family protein"
/protein_id="YP_005761875.1"
/db_xref="GI:384887364"
/db_xref="GeneID:12340761"
/translation="MPFVEEEFEILKPTKALFFVHDVLKCSLKEAQRHLDKQRLKQNQ
QAVRKSQMIQGVVRLIHFKPNEKTQALVFETKDFGVFDKPAQVYTHPKGYFYHESLLD
CIQSHFSKNAHPAHRLDYETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALVHGLIE
KSMKIDKPILTPQNIQKDLHIRSKISPLGKPSTTLVEPLSYNPFLDISLLKITPLTGR
THQIRLHLSSVDHRIVGEGLYGVADEEARGYLQLKRENHAPLLMLHAFRLGFEFKGAN
YKITSQIPKRFMPFLKDLSLFY"
misc_feature complement(355057..355899)
/locus_tag="HPKB_0350"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature complement(355102..355674)
/locus_tag="HPKB_0350"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature complement(order(355243..355245,355555..355566))
/locus_tag="HPKB_0350"
/note="active site"
/db_xref="CDD:211346"
gene complement(355911..357461)
/gene="recJ"
/locus_tag="HPKB_0351"
/db_xref="GeneID:12340762"
CDS complement(355911..357461)
/gene="recJ"
/locus_tag="HPKB_0351"
/note="Consensus COG by CONSORF: COG0608"
/codon_start=1
/transl_table=11
/product="single-stranded DNA-specific exonuclease"
/protein_id="YP_005761876.1"
/db_xref="GI:384887365"
/db_xref="GeneID:12340762"
/translation="MKQKLKAQIKERVASIAYKEKGFPSPFLFKDLKKAALKIIEAMR
ANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVIPNRFMDGYGISKKFLEKHHA
PLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQK
EVCGALVAFYLCYGIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYF
LQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLINSAGRMQDAKIALDFLSANNFQ
DGYFLYERLKACNLKRKMIQQQVFEEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLV
EATQKPSLVFTFKEGVYKGSARSSSNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNN
IISLFETLENFDFKILPFCEKEPPLTLTLKDIDRELLEIIEAGEPYGQENPEPLFQAQ
NLEVIEEKIIKESHQVLRFKDKECIKEAIYFNTERFLKAGEKVSAIFSVELDEYSNEP
KMFVKSLL"
misc_feature complement(355917..357407)
/gene="recJ"
/locus_tag="HPKB_0351"
/note="single-stranded-DNA-specific exonuclease RecJ;
Region: recJ; TIGR00644"
/db_xref="CDD:161976"
misc_feature complement(356868..357338)
/gene="recJ"
/locus_tag="HPKB_0351"
/note="DHH family; Region: DHH; pfam01368"
/db_xref="CDD:201752"
misc_feature complement(356271..356447)
/gene="recJ"
/locus_tag="HPKB_0351"
/note="DHHA1 domain; Region: DHHA1; pfam02272"
/db_xref="CDD:202185"
gene complement(357470..359086)
/gene="pyrG"
/locus_tag="HPKB_0352"
/db_xref="GeneID:12340763"
CDS complement(357470..359086)
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="Consensus COG by CONSORF: COG0504"
/codon_start=1
/transl_table=11
/product="CTP synthetase"
/protein_id="YP_005761877.1"
/db_xref="GI:384887366"
/db_xref="GeneID:12340763"
/translation="MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDP
YINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIE
NERKGEYLGKTIQIVPHVTDEIKRRIKSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQ
LKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLD
KELKNKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAA
WNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNIEWLDSENF
NEKTDLESVDAILVPGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNV
LGLKGANSTEFNQRCEYPVVYLIEDFIDQNHQKQVRTYNSPLGGTMRLGEYECEIMPN
SLLEKAYKKPSIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFV
GVQFHPEFTSRLQSPNPIILDFIKSTLHKS"
misc_feature complement(357473..359077)
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="CTP synthetase; Validated; Region: pyrG; PRK05380"
/db_xref="CDD:180047"
misc_feature complement(358316..359074)
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="CTP synthetase (CTPs) is a two-domain protein,
which consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent...; Region: CTGs;
cd03113"
/db_xref="CDD:48377"
misc_feature complement(order(358658..358660,358664..358666,
358856..358861,358868..358870,358874..358876,
358952..358960,358964..358966,359024..359035,
359042..359044))
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="Catalytic site [active]"
/db_xref="CDD:48377"
misc_feature complement(order(358415..358417,358517..358525,
358655..358657,358964..358966,359027..359041))
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="active site"
/db_xref="CDD:48377"
misc_feature complement(order(358415..358417,358517..358525,
358637..358639,358655..358660,358952..358966))
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="UTP binding site [chemical binding]; other site"
/db_xref="CDD:48377"
misc_feature complement(357494..358216)
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cytidine Triphosphate Synthetase; Region:
GATase1_CTP_Synthase; cd01746"
/db_xref="CDD:153217"
misc_feature complement(order(357542..357544,357548..357550,
357677..357688,357881..357883,357941..357943,
357950..357955,358028..358042))
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="active site"
/db_xref="CDD:153217"
misc_feature complement(order(357950..357952,358034..358036))
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="putative oxyanion hole; other site"
/db_xref="CDD:153217"
misc_feature complement(order(357542..357544,357548..357550,
357953..357955))
/gene="pyrG"
/locus_tag="HPKB_0352"
/note="catalytic triad [active]"
/db_xref="CDD:153217"
gene 359345..360013
/locus_tag="HPKB_0353"
/db_xref="GeneID:12340764"
CDS 359345..360013
/locus_tag="HPKB_0353"
/note="Consensus COG by CONSORF: COG0671"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761878.1"
/db_xref="GI:384887367"
/db_xref="GeneID:12340764"
/translation="MAENSFKNVSAQPKVFFLLQVKTLFLLGGVFSAFFILMVGLVFF
DYAHSMDNAIFNFARSTSLNSSPILTLILQNAARLGSSQFVLPLSLLVGVFLSLYRRN
LALGVWFVLSVVLFEALLESLKYLLAHSIQWFSYSANFPNATALSLALFYGLLILLIP
HLITHQALKNILFYSLFGLVFLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSV
FQKI"
misc_feature 359486..359920
/locus_tag="HPKB_0353"
/note="PAP2_like proteins, a super-family of histidine
phosphatases and vanadium haloperoxidases, includes type 2
phosphatidic acid phosphatase or lipid phosphate
phosphatase (LPP), Glucose-6-phosphatase,
Phosphatidylglycerophosphatase B and bacterial acid...;
Region: PAP2_like; cl00474"
/db_xref="CDD:241889"
misc_feature order(359714..359716,359768..359776,359903..359905)
/locus_tag="HPKB_0353"
/note="active site"
/db_xref="CDD:238813"
gene 360057..361760
/gene="fliF"
/locus_tag="HPKB_0354"
/db_xref="GeneID:12340765"
CDS 360057..361760
/gene="fliF"
/locus_tag="HPKB_0354"
/note="Consensus COG by CONSORF: COG1766"
/codon_start=1
/transl_table=11
/product="flagellar M-ring protein FliF"
/protein_id="YP_005761879.1"
/db_xref="GI:384887368"
/db_xref="GeneID:12340765"
/translation="MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPF
KEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILKDDTILIPKDKVYEERITL
ASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNEN
GESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFD
FSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPE
KYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSD
ESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSF
TPLIKYILVFIVLFIFYKKVIVPFSERMLEVMPDEDKEVKSMFEEMDEEEDELNKLGD
LRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK
G"
misc_feature 360057..361745
/gene="fliF"
/locus_tag="HPKB_0354"
/note="flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF); Region: fliF; TIGR00206"
/db_xref="CDD:129310"
misc_feature 360204..360728
/gene="fliF"
/locus_tag="HPKB_0354"
/note="Secretory protein of YscJ/FliF family; Region:
YscJ_FliF; pfam01514"
/db_xref="CDD:110511"
misc_feature 360825..361325
/gene="fliF"
/locus_tag="HPKB_0354"
/note="Flagellar M-ring protein C-terminal; Region:
YscJ_FliF_C; pfam08345"
/db_xref="CDD:192009"
gene 361779..362810
/gene="fliG"
/locus_tag="HPKB_0355"
/db_xref="GeneID:12340766"
CDS 361779..362810
/gene="fliG"
/locus_tag="HPKB_0355"
/note="Consensus COG by CONSORF: COG1536"
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein G"
/protein_id="YP_005761880.1"
/db_xref="GI:384887369"
/db_xref="GeneID:12340766"
/translation="MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDID
SITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA
RKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSY
FPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRL
GQKSTKTTLARIESVDNKLAGAIKEMMFTFEDISKLDNFAIREILKVADKKDLSLALK
TSTQDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQ
TGEEEDVIE"
misc_feature 361812..362807
/gene="fliG"
/locus_tag="HPKB_0355"
/note="flagellar motor switch protein FliG; Region: fliG;
TIGR00207"
/db_xref="CDD:161765"
misc_feature 362457..362780
/gene="fliG"
/locus_tag="HPKB_0355"
/note="FliG C-terminal domain; Region: FliG_C; pfam01706"
/db_xref="CDD:190075"
gene 362797..363573
/gene="fliH"
/locus_tag="HPKB_0356"
/db_xref="GeneID:12340767"
CDS 362797..363573
/gene="fliH"
/locus_tag="HPKB_0356"
/note="Consensus COG by CONSORF: COG1317. Candidate starts
by CONSORF: 362785,362797"
/codon_start=1
/transl_table=11
/product="flagellar assembly protein H"
/protein_id="YP_005761881.1"
/db_xref="GI:384887370"
/db_xref="GeneID:12340767"
/translation="MSLNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNSASLET
PNPKEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKALIENAKNDGYK
IGFKEGEEKMRNELTHSVNEEKNQLLHAISALDEKMKKSEDHLMALEKELSAIAIDIA
KEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLE
SNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV"
misc_feature 362797..363570
/gene="fliH"
/locus_tag="HPKB_0356"
/note="flagellar assembly protein H; Validated; Region:
fliH; PRK06669"
/db_xref="CDD:180653"
misc_feature 363157..363540
/gene="fliH"
/locus_tag="HPKB_0356"
/note="Flagellar assembly protein FliH; Region: FliH;
pfam02108"
/db_xref="CDD:111047"
gene 363570..365426
/gene="dxs"
/locus_tag="HPKB_0357"
/db_xref="GeneID:12340768"
CDS 363570..365426
/gene="dxs"
/locus_tag="HPKB_0357"
/note="Consensus COG by CONSORF: COG1154"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose-5-phosphate synthase"
/protein_id="YP_005761882.1"
/db_xref="GI:384887371"
/db_xref="GeneID:12340768"
/translation="MILQNKTFDLNPNDIAGLELVCQTLRSRILEVVSANGGHLSSSL
GAVELIVSMHALFDCQKNPFIFDTSHQAYAHKLLTGRFESFSTLRQFKGLSGFTKPSE
SAYDYFIAGHSSTSVSIGVGVAKAFCLKQALGMPIALLGDGSISAGIFYEALNELGDR
KYPMIMILNDNEMSISTPIGALSKALSQLMKGSFYQSFRSKVKKILSTLPESVNYLAS
RFEESFKLITPGVFFEELGINYIGPINGHDLSAIIETLKLAKELKEPVLIHAQTLKGK
GYKIAEGRYEKWHGVGPFDLDTGLSKKSKSAILSPTEAYSNTLLELAKKDEKIVGVTA
AMPSGTGLDKLIDAYPLRFFDVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDS
IVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNA
VHFANEHHSSPCAFRYPRGSFALKEGVFEPSGFVLGQSELLKKEGEILLIGYGNGVGR
AHLVQLALKEKNIECALLDLRFLKPLDQNLSAIIAPYQKLYVFSDNYKLGGVASAILE
FLSEQNILKPVKSFEIVDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER"
misc_feature 363570..365414
/gene="dxs"
/locus_tag="HPKB_0357"
/note="1-deoxy-D-xylulose-5-phosphate synthase; Region:
dxs; TIGR00204"
/db_xref="CDD:129308"
misc_feature 363678..364403
/gene="dxs"
/locus_tag="HPKB_0357"
/note="Thiamine pyrophosphate (TPP) family, DXS subfamily,
TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate
synthase (DXS) is a regulatory enzyme of the
mevalonate-independent pathway involved in terpenoid
biosynthesis. Terpeniods are plant natural products...;
Region: TPP_DXS; cd02007"
/db_xref="CDD:73294"
misc_feature order(363906..363908,363990..364001,364080..364082,
364086..364088)
/gene="dxs"
/locus_tag="HPKB_0357"
/note="TPP-binding site; other site"
/db_xref="CDD:73294"
misc_feature 364506..364973
/gene="dxs"
/locus_tag="HPKB_0357"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature order(364548..364550,364554..364556,364572..364574,
364623..364625,364632..364634,364638..364655,
364662..364667,364671..364679,364731..364733,
364740..364745,364818..364820,364827..364829,
364875..364880,364941..364943)
/gene="dxs"
/locus_tag="HPKB_0357"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(364572..364574,364632..364634,364641..364649,
364728..364733,364737..364739,364818..364820,
364824..364826,364851..364856,364860..364865,
364869..364871)
/gene="dxs"
/locus_tag="HPKB_0357"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(364641..364643,364647..364649,364722..364724,
364731..364733)
/gene="dxs"
/locus_tag="HPKB_0357"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature 365073..365387
/gene="dxs"
/locus_tag="HPKB_0357"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene 365441..367231
/gene="lepA"
/locus_tag="HPKB_0358"
/db_xref="GeneID:12340769"
CDS 365441..367231
/gene="lepA"
/locus_tag="HPKB_0358"
/note="Consensus COG by CONSORF: COG0481. Candidate starts
by CONSORF: 365423,365441"
/codon_start=1
/transl_table=11
/product="GTP-binding protein LepA"
/protein_id="YP_005761883.1"
/db_xref="GI:384887372"
/db_xref="GeneID:12340769"
/translation="MKNIRNFSIIAHIDHGKSTLADCLIAECNAISNREMTSQVMDTM
DIEKERGITIKAQSVRLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVD
ATQGVEAQTIANTYIALDNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEV
SAKARLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINT
EQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTD
AKNPTPKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVAL
GFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLTDNSIKYVQNPSELPP
ENHIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNE
IVMDFYDKLKSCTKGYASFDYEPIENREAHLVKLDVRVAGDVVDALSIIIDKNKAYEK
GRALVETMKELIPRQLFEVAIQASVGNKIIARETIKSVGKNVTAKCYGGDITRKRKLL
EKQKEGKKRMKAIGKVELPQEAFLAILKID"
misc_feature 365441..367228
/gene="lepA"
/locus_tag="HPKB_0358"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:180078"
misc_feature 365453..365986
/gene="lepA"
/locus_tag="HPKB_0358"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature 365471..365494
/gene="lepA"
/locus_tag="HPKB_0358"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature order(365474..365476,365480..365482,365492..365497,
365504..365506,365513..365518,365609..365614,
365678..365683,365750..365755,365861..365863,
365873..365875)
/gene="lepA"
/locus_tag="HPKB_0358"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature order(365480..365497,365828..365833,365837..365839,
365921..365929)
/gene="lepA"
/locus_tag="HPKB_0358"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature 365576..365611
/gene="lepA"
/locus_tag="HPKB_0358"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature 365597..365599
/gene="lepA"
/locus_tag="HPKB_0358"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature 365666..365677
/gene="lepA"
/locus_tag="HPKB_0358"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature 365672..365728
/gene="lepA"
/locus_tag="HPKB_0358"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature 365828..365839
/gene="lepA"
/locus_tag="HPKB_0358"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature 365921..365929
/gene="lepA"
/locus_tag="HPKB_0358"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature 366008..366268
/gene="lepA"
/locus_tag="HPKB_0358"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:58090"
misc_feature 366641..366880
/gene="lepA"
/locus_tag="HPKB_0358"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:58062"
misc_feature 366902..367225
/gene="lepA"
/locus_tag="HPKB_0358"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene 367240..368169
/locus_tag="HPKB_0359"
/db_xref="GeneID:12340770"
CDS 367240..368169
/locus_tag="HPKB_0359"
/note="Consensus COG by CONSORF: COG0270. Candidate starts
by CONSORF: 367237,367240"
/codon_start=1
/transl_table=11
/product="DNA-cytosine methyltransferase"
/protein_id="YP_005761884.1"
/db_xref="GI:384887373"
/db_xref="GeneID:12340770"
/translation="MKVGSLFAGIGGFECAFLQAGFEIGWANELDKDACNTYRANFKH
KLLEQDIKDLNPNELEDVGLISAGFPCQAFSIAGLQKGLNDERGAIVMEMFRIIQAKK
PQVLLLENVKNLVSHNKGETLKFILETLKNLGYFVHYKILNTYEYSTIPQNRERIYIV
GFLDKNHYKRFHFPLKVNHTQSIKDLLEIKVGEEFYYKQYRFYETLKKEITKTDTCYQ
WRRHYVRENKNNLCPTLTANMGTGGHNVPLVLDEQGIRKLTPKECLNFQGFAKDYVLP
NTAKSKLYKQIGNSVSVPVIKALALEIKKVVYG"
misc_feature 367240..368154
/locus_tag="HPKB_0359"
/note="Cytosine-C5 specific DNA methylases; Methyl
transfer reactions play an important role in many aspects
of biology. Cytosine-specific DNA methylases are found
both in prokaryotes and eukaryotes. DNA methylation, or
the covalent addition of a methyl group...; Region:
Cyt_C5_DNA_methylase; cd00315"
/db_xref="CDD:73191"
misc_feature 367252..368148
/locus_tag="HPKB_0359"
/note="DNA-methyltransferase (dcm); Region: dcm;
TIGR00675"
/db_xref="CDD:161991"
misc_feature order(367258..367275,367321..367332,367384..367395,
367441..367443,367447..367449)
/locus_tag="HPKB_0359"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature order(367441..367443,367450..367455,367462..367473,
367480..367482,367498..367500,367564..367566,
367570..367575,367699..367701,367705..367707,
367801..367803,367807..367809,367936..367941,
367945..367950,368104..368106)
/locus_tag="HPKB_0359"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature order(367441..367443,367450..367452,367462..367464,
367564..367566,367570..367572,367699..367701,
367705..367707,368104..368106)
/locus_tag="HPKB_0359"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
gene 368162..368632
/locus_tag="HPKB_0360"
/db_xref="GeneID:12340771"
CDS 368162..368632
/locus_tag="HPKB_0360"
/note="Candidate starts by CONSORF: 368156,368162"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761885.1"
/db_xref="GI:384887374"
/db_xref="GeneID:12340771"
/translation="MDNYTHQTWVINLTGIDKGIFRTMNGNADELIAIGRVIKAGFPC
SRVDVTNAKYDAIVDLGGKQKLLRIQIKGTGGDTLNFTGGYRSGVQIDRNAPKRTYKY
TKKDCDLILGIDTRTSECYIIPIEDIQEWGNTKSLSQLQHYKENWQILIDLALE"
gene complement(369029..369838)
/gene="flgG"
/locus_tag="HPKB_0361"
/db_xref="GeneID:12340772"
CDS complement(369029..369838)
/gene="flgG"
/locus_tag="HPKB_0361"
/note="Consensus COG by CONSORF: COG4786"
/codon_start=1
/transl_table=11
/product="flagellar basal-body rod protein FlgG"
/protein_id="YP_005761886.1"
/db_xref="GI:384887375"
/db_xref="GeneID:12340772"
/translation="MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDF
LRLYQQYREQLPLEDQTKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALT
SPNLYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEI
EVNQNGEITFRDNEAPIQAGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSGALR
QYMLEKSNVNAVREMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLASKA"
misc_feature complement(369041..369838)
/gene="flgG"
/locus_tag="HPKB_0361"
/note="Flagellar basal body rod protein [Cell motility and
secretion]; Region: FlgG; COG4786"
/db_xref="CDD:34397"
misc_feature complement(369116..369385)
/gene="flgG"
/locus_tag="HPKB_0361"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; cl15855"
/db_xref="CDD:214255"
gene complement(369887..371173)
/gene="kgtP"
/locus_tag="HPKB_0362"
/db_xref="GeneID:12340773"
CDS complement(369887..371173)
/gene="kgtP"
/locus_tag="HPKB_0362"
/note="Consensus COG by CONSORF: COG0477"
/codon_start=1
/transl_table=11
/product="alpha-ketoglutarate permease"
/protein_id="YP_005761887.1"
/db_xref="GI:384887376"
/db_xref="GeneID:12340773"
/translation="MNPQTQPATKKPLRSLLAASSGNLVEWYDFYAYAFLAPYFAKEF
THTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMALGSFLL
ALLPTKEIVGEWAFLFLLLARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVT
LVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNVMEETMDSQT
TFKTTIKEKTQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSP
KESSFIMLLALSYFILLQPLCGILADKIKRTQMLMVFAIAGLIVTPVVFYGIKHASGV
YEALFYEMLALSAMSFYTCIAGVVKAELFPEHVRALGVGLAYAIANALFGGSASYVAL
QFKQHGFEWGFVGYVMFSIVIFMVMVIIFPKKTYLE"
misc_feature complement(369956..371164)
/gene="kgtP"
/locus_tag="HPKB_0362"
/note="alpha-ketoglutarate transporter; Provisional;
Region: PRK10406"
/db_xref="CDD:182433"
misc_feature complement(369962..370999)
/gene="kgtP"
/locus_tag="HPKB_0362"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(370025..370027,370034..370039,
370046..370051,370058..370063,370094..370096,
370103..370108,370118..370120,370127..370132,
370139..370141,370292..370294,370304..370306,
370313..370315,370325..370327,370337..370339,
370379..370381,370388..370393,370400..370405,
370412..370414,370679..370681,370697..370702,
370709..370714,370748..370750,370757..370762,
370769..370774,370781..370786,370946..370951,
370955..370960,370970..370972,370979..370984,
370991..370993))
/gene="kgtP"
/locus_tag="HPKB_0362"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(371336..373924)
/locus_tag="HPKB_0363"
/db_xref="GeneID:12340774"
CDS complement(371336..373924)
/locus_tag="HPKB_0363"
/note="Consensus COG by CONSORF: COG1674. Candidate starts
by CONSORF: 373933,373924"
/codon_start=1
/transl_table=11
/product="cell division protein FtsK"
/protein_id="YP_005761888.1"
/db_xref="GI:384887377"
/db_xref="GeneID:12340774"
/translation="MKSKKLYLALIIGVLLAFLTLSSWLGNSGLVGRFGVWFAAINKK
YFGYLSLVNLPYLAWVSFLLYRTKNPFTEIVLEKTLGHLLGILSLLFLQSSLLNQGEI
GNSVRLFLRPFIGDFGLYALIMLMAVISYLILFKLPPKSVFYPYINKTQSLLKEIYKQ
CLQAFSPNFSLKKEGFENAPSDIQKKETKNDKEKENLKENPIDENHKTPNEESFLAIP
TPYNTTLNALEPQEGLVQISSHSPTHYTIYPKRSRFNDLSNPTNPTLKEVKQETKERE
PTPTKETLAPTMSKPATPKPIMPAPIMPAPIMPASAPNTENDNKTENHKAPNHPIKEE
SPQENAQEERIKEMIKEEEKEVQNAPSFSPITPTSAKKPVMVKELSENKEILDGLDYG
EVQKPKDYELPTTQLLNALCLKDTSLDENEIDQKIQDLLSKLRTFKIDGDIIRTYSGP
IVTTFEFRPAPNVKVSRILGLSDDLAMTLCAESIRIQAPIKGKDVVGIEIPNSQSQTI
YLREILESELFQKSSSPLTLALGKDIVGNPFITDLKKLPHLLIAGTTGSGKSVGVNAM
ILSLLYKNPPDQLKLVMIDPKMVEFSIYADIPHLLTPIITDPKKAIGALQSVAKEMER
RYSLMSEYKVKTIDSYNEQAPNNGVEAFPYLIVVIDELADLMMTGGKEAEFPIARIAQ
MGRASGLHLIVATQRPSVDVVTGLIKTNLPSRVSFRVGTKIDSKVILDTDGAQSLLGR
GDMLFTPPGSNGLVRLHAPFATEDEIKKIVDFIKAQKAVEYDKDFLLEESRMPLDTPN
YQGDDILERAKAVILEKKITSTSFLQRQLKIGYNQAATITDELEAQGFLSPRNAKGNR
EILQNF"
misc_feature complement(371339..373924)
/locus_tag="HPKB_0363"
/note="DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning];
Region: FtsK; COG1674"
/db_xref="CDD:31860"
misc_feature complement(373730..>373915)
/locus_tag="HPKB_0363"
/note="TspO/MBR family; Region: TspO_MBR; cl01379"
/db_xref="CDD:207391"
misc_feature complement(371825..372400)
/locus_tag="HPKB_0363"
/note="FtsK/SpoIIIE family; Region: FtsK_SpoIIIE;
pfam01580"
/db_xref="CDD:190044"
misc_feature complement(371348..371536)
/locus_tag="HPKB_0363"
/note="Ftsk gamma domain; Region: Ftsk_gamma; pfam09397"
/db_xref="CDD:204229"
gene complement(373921..376257)
/locus_tag="HPKB_0364"
/db_xref="GeneID:12340775"
CDS complement(373921..376257)
/locus_tag="HPKB_0364"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761889.1"
/db_xref="GI:384887378"
/db_xref="GeneID:12340775"
/translation="MNLEKLFLERTPLFVFSSTRRLKHFYLEQGEGFLPNAMSMGSFF
EQAFYIPNKKKIPNSARLILMIDTIKAIAKEKKSILEGLLLFENSFLGYLESTSFLFD
LFDELSSACIKLNELSSKDIYLDYEKHLEVLEMIYKHYIKKLEELGFYDKIMQEKPTI
LKEFFEHFSSIEWHLDGFMSVFERQCLLKVAELAPITLHLSCDKYNQKFLEFLNLKLE
TDCDYSIDFKTQKILSQTPKRQKIEPKLYANSSYLKQSALVLQTIEEYLQKDNDPNKM
AIITPNADFLPFLKLLDKNNNLNFAMGLGAKNSPYYTELVKILEDLETSGFDWSASPL
LDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLTNYSLKDLLHLYLQEFEA
NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKSLNL
PTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKVSNMLLELDLHIEPIKDAYTLFE
STPLKDYQEEEIKATIPKDFSFSASSLNAFLTCKRRFYYHYIKRFKENPKDESNSAVG
SLLHELLKEAYEKDKNPYALEERLIQLLETRENITPKERLDTLIALKKIQAFYVKEKE
RFNAKIKILDLEKSFETTIQGVAFKGRIDRIDKTADNEVILLDYKFKSELKLDNMSEK
QRGSLSPIEIAQISADYQMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEPILQTK
MDYLKSSLIPKLKQEIDFEKTLEVKDCEYCSFKDMCNR"
misc_feature complement(374683..376257)
/locus_tag="HPKB_0364"
/note="Inactivated superfamily I helicase [DNA
replication, recombination, and repair]; Region: COG3893"
/db_xref="CDD:33681"
misc_feature complement(373924..374640)
/locus_tag="HPKB_0364"
/note="RecB family exonuclease [DNA replication,
recombination, and repair]; Region: COG2887"
/db_xref="CDD:32713"
gene complement(376254..378173)
/gene="tktA"
/locus_tag="HPKB_0365"
/db_xref="GeneID:12340776"
CDS complement(376254..378173)
/gene="tktA"
/locus_tag="HPKB_0365"
/note="Consensus COG by CONSORF: COG0021. Candidate starts
by CONSORF: 378182,378179,378173"
/codon_start=1
/transl_table=11
/product="transketolase"
/protein_id="YP_005761890.1"
/db_xref="GI:384887379"
/db_xref="GeneID:12340776"
/translation="MSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVV
LSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSLLHLWGFDLSLEDLKRFRQLHSKTP
GHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGDLQ
EGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDG
HDYQAIHNALEEAKKSTKPTLLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENA
QINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKEKIHALKDFDFSAINYP
VFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFG
IREHAMGAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGV
GEDGATHQPIEQLSHLRALPNFYAFRPSDAFENTACMQVALSLSAPSGLILSRQNLPV
LDEVSKERVLKGAYVKYDAKNPIITLVASGSEVSLALESAKILERENIPTQVVSAPCF
DLLVEQDESYLKELFKGKVLMIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGF
SVENITAQAKRLLHA"
misc_feature complement(376263..378146)
/gene="tktA"
/locus_tag="HPKB_0365"
/note="transketolase, bacterial and yeast; Region:
tktlase_bact; TIGR00232"
/db_xref="CDD:161779"
misc_feature complement(377355..378134)
/gene="tktA"
/locus_tag="HPKB_0365"
/note="Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK provides
a link between glycolysis and the...; Region: TPP_TK;
cd02012"
/db_xref="CDD:48175"
misc_feature complement(order(377394..377396,377604..377606,
377610..377612,377616..377618,377691..377693,
377703..377708,377814..377816,377820..377822,
377964..377966))
/gene="tktA"
/locus_tag="HPKB_0365"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48175"
misc_feature complement(order(377559..377561,377604..377609,
377655..377657,377667..377669,377676..377681,
377688..377699,377808..377810,377814..377819,
377856..377858,377862..377867,377889..377891))
/gene="tktA"
/locus_tag="HPKB_0365"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48175"
misc_feature complement(376665..377129)
/gene="tktA"
/locus_tag="HPKB_0365"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature complement(order(376692..376694,376755..376760,
376806..376808,376815..376817,376890..376895,
376902..376904,376959..376967,376971..376976,
376983..377000,377004..377006,377013..377015,
377070..377072,377088..377090,377094..377096))
/gene="tktA"
/locus_tag="HPKB_0365"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(376764..376766,376770..376775,
376779..376784,376809..376811,376815..376817,
376896..376898,376902..376907,376989..376997,
377004..377006,377070..377072))
/gene="tktA"
/locus_tag="HPKB_0365"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(376902..376904,376911..376913,
376989..376991,376995..376997))
/gene="tktA"
/locus_tag="HPKB_0365"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(<376461..376613)
/gene="tktA"
/locus_tag="HPKB_0365"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene complement(378226..379068)
/locus_tag="HPKB_0366"
/db_xref="GeneID:12340777"
CDS complement(378226..379068)
/locus_tag="HPKB_0366"
/note="Consensus COG by CONSORF: COG0196. Candidate starts
by CONSORF: 379074,379068"
/codon_start=1
/transl_table=11
/product="bifunctional riboflavin kinase/FMN
adenylyltransferase"
/protein_id="YP_005761891.1"
/db_xref="GI:384887380"
/db_xref="GeneID:12340777"
/translation="MLNFLSISSEPKIKSLAIGKFDGLHLGHQALFKELKDPKALLII
EKKHYTKGYLTPLKYRAKLVGMPLFFVYLEEISPLNALEFLDLLKKKFPHLERLVVGY
DFRFGRERQNDALFLKERFEKTIIVPEVKIKEISVHSKTIKLALSHGDLSLANKLLGR
PYEVCGEVISDQGLGHKELAPTLNIKTKDFILPSFGVYASLVKIKDPIYQKSVSFIGN
RLSTDQHFAIECHVLDTIIENPPQEIALRLVQKIRDNMRFSSLKELKNQIQQDILRAK
EILR"
misc_feature complement(378559..379029)
/locus_tag="HPKB_0366"
/note="FAD synthetase, N-terminal domain of the
bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
/db_xref="CDD:185679"
misc_feature complement(378229..379026)
/locus_tag="HPKB_0366"
/note="riboflavin kinase/FMN adenylyltransferase; Region:
ribF; TIGR00083"
/db_xref="CDD:161699"
misc_feature complement(order(378652..378660,378682..378684,
378760..378762,378985..378987,378994..378996,
379003..379014))
/locus_tag="HPKB_0366"
/note="active site"
/db_xref="CDD:185679"
misc_feature complement(378229..378600)
/locus_tag="HPKB_0366"
/note="Riboflavin kinase; Region: Flavokinase; smart00904"
/db_xref="CDD:197972"
gene complement(379034..379741)
/locus_tag="HPKB_0367"
/db_xref="GeneID:12340778"
CDS complement(379034..379741)
/locus_tag="HPKB_0367"
/note="Consensus COG by CONSORF: COG1189"
/codon_start=1
/transl_table=11
/product="hemolysin (tly)"
/protein_id="YP_005761892.1"
/db_xref="GI:384887381"
/db_xref="GeneID:12340778"
/translation="MRLDYALFNQHLVNSREKAKALVLKNQVLVNKMVVSKPSFMVRE
NDKIELIATNLFVSRAGEKLAAFLENHFIDFKKKVVLDVGASKGGFSEVALLKGAKKV
LCVDVGKMQLDESLRNDTRIECYEKCDIRGFKTPETIDLTLCDVSFISLYCILEAILP
LSDEFLTLFKPQFEVGRATKRNKKGVVVDKEAILNALENFKNHLKTKDFQILKIQESL
VKGKNGNVEFFIHFKRA"
misc_feature complement(<379592..379741)
/locus_tag="HPKB_0367"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(379061..379738)
/locus_tag="HPKB_0367"
/note="hemolysin TlyA family protein; Region: tly;
TIGR00478"
/db_xref="CDD:129570"
misc_feature complement(order(379613..379615,379619..379642,
379661..379663,379667..379672,379679..379684,
379688..379693,379697..379702,379736..379738))
/locus_tag="HPKB_0367"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature complement(379229..379504)
/locus_tag="HPKB_0367"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(379307..379309,379352..379360,
379421..379426,379475..379495))
/locus_tag="HPKB_0367"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(379741..380256)
/locus_tag="HPKB_0368"
/db_xref="GeneID:12340779"
CDS complement(379741..380256)
/locus_tag="HPKB_0368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761893.1"
/db_xref="GI:384887382"
/db_xref="GeneID:12340779"
/translation="MGLKNLSTLLVFLFFCLGCVSNFNEDTYTPDLILEKKIQASRKG
EITQNNVPIITAIATHLNDVDSGAYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPI
GSEPLWVREITKDEFDGILETTNRWSRAFLLAFDKLDYLAVQEAKLELDAYSLGKIVF
NFAYQVPLPQF"
gene 380323..381246
/gene="pyrB"
/locus_tag="HPKB_0369"
/db_xref="GeneID:12340780"
CDS 380323..381246
/gene="pyrB"
/locus_tag="HPKB_0369"
/note="Consensus COG by CONSORF: COG0540"
/codon_start=1
/transl_table=11
/product="aspartate carbamoyltransferase catalytic
subunit"
/protein_id="YP_005761894.1"
/db_xref="GI:384887383"
/db_xref="GeneID:12340780"
/translation="MPKKCRHLLQTSDLSLDEIKLLLKKASVYANDFNAVSLETKEKM
QNKIIVALFFENSTRTVSSFEIASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQ
PDAIITRHAFSSAPFKLAEFSQCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKG
KKIAFIGDVRNSRVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNIEEAIEFADI
LMSLRTQTERHNAPIFASLKDYGNAYCITQKRLEAHAKNKEIIILHPGPVHRDIDIES
AVLEDKRSKVLEQVKNGVAMRMAVLEFLLLD"
misc_feature 380323..381237
/gene="pyrB"
/locus_tag="HPKB_0369"
/note="aspartate carbamoyltransferase catalytic subunit;
Provisional; Region: pyrB; PRK00856"
/db_xref="CDD:179144"
misc_feature 380338..380775
/gene="pyrB"
/locus_tag="HPKB_0369"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:202362"
misc_feature 380797..381234
/gene="pyrB"
/locus_tag="HPKB_0369"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:201065"
gene 381541..382980
/locus_tag="HPKB_0370"
/db_xref="GeneID:12340781"
CDS 381541..382980
/locus_tag="HPKB_0370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761895.1"
/db_xref="GI:384887384"
/db_xref="GeneID:12340781"
/translation="MKNSTPLKNKVFCGLYVLSLSTPLQAFDYKIEVLAESFSKVGFN
KKKIDISRGIYPTETFVTAVGQGNIYADFLSKGLKDQGHVLEGKVGGTLGGVAYDSTK
FNQGGSVIYNYIGYWDGYLGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRR
NYLMNNAFLEYRYKDIFLAKGGRYQSSAPYMSSYTQGFEISAKVKDKSEGIHKLWWFS
SWGRAFAYGEWIYDFYSPRTVVKNGRTLNYGIHLVDYTYERKGVSISPFFQFSPGTYY
SPGVVVGYDSNPNFDGVGFRSETKAYILLPVHAPLRRDTYRYAIKAGTAGQSLLIRQR
FDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDFWTNSVYDIGQALSHVVTADAVSGW
VFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKISKSLTASVKLEYLGVMTHSGF
TVGSYRPTPGSKALYSDRSHLMTTLSAKF"
misc_feature 381559..382977
/locus_tag="HPKB_0370"
/note="Putative outer membrane protein; Region: HP_OMP_2;
pfam02521"
/db_xref="CDD:145585"
gene 383073..384728
/locus_tag="HPKB_0371"
/db_xref="GeneID:12340782"
CDS 383073..384728
/locus_tag="HPKB_0371"
/note="Consensus COG by CONSORF: COG1132"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein (msbA)"
/protein_id="YP_005761896.1"
/db_xref="GI:384887385"
/db_xref="GeneID:12340782"
/translation="MKLFFRRYSKYLKEHYKSFIVVLFSSLVVALSTAWGTYLVKPTL
DEIFINKDTHMLKILPFLVILAYLGKSGGMYLGTYFTNFIGLDIVKKIRNTMLESLLK
MEMDFFNRTKKGELIARITNDIGLIRASLSNYLSESIREGLTIVGLVGVVVYQSPKLA
LVGLVIMPLAAIPISKIIRKVKKLAKSHQESNAKITARLSEVFNNVEAIKISNGEKLE
HKAFVKENEAFFKIGIKNIAVAEISSPLMEFLGSIAIALVIYLGGNEVIRGHISVGAF
FSFITALFMLYTPIKRLTRIVSNFQEALVASDRIHEILEREPAIVDGELTLNDAIHTI
EFKKVWLAYALDNQERYVLSDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKG
EIFINDQKIESITQKSLREKISVVTQRVFIFNGSVAENVAYGLEIDEIKIKECLKKAQ
ALDFVEKMSHGIESVLDEFGANLSGGQRQRIAIARALYKDAQVLIFDEATSALDNNTE
ESVKQSILELKQNRLIILISHNPSTLKLATKHVKLEHGRLIEC"
misc_feature 383169..384722
/locus_tag="HPKB_0371"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature 383244..383942
/locus_tag="HPKB_0371"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature 384072..384722
/locus_tag="HPKB_0371"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 384180..384203
/locus_tag="HPKB_0371"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(384189..384194,384198..384206,384324..384326,
384561..384566,384657..384659)
/locus_tag="HPKB_0371"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 384315..384326
/locus_tag="HPKB_0371"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 384489..384518
/locus_tag="HPKB_0371"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 384549..384566
/locus_tag="HPKB_0371"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 384573..384584
/locus_tag="HPKB_0371"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 384645..384665
/locus_tag="HPKB_0371"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 384722..385345
/locus_tag="HPKB_0372"
/db_xref="GeneID:12340783"
CDS 384722..385345
/locus_tag="HPKB_0372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761897.1"
/db_xref="GI:384887386"
/db_xref="GeneID:12340783"
/translation="MLRVLSVGVIFILLGCQFFNKTTLHLKYKDYPKNSALKTAFTLT
PPKIFFNTRFVPPFYQKEFKKAITQQIAYFLKDKSAFTINVSGNVFFSFEESPKDLKA
IKERLKKTIEPNADPKSVMRFLNLQASLILECAPQTTCPFDTLLIPTAFSVPVYYANR
LGDNPSLFSQEDKTYHNALIKALNKAYYSLMEGLEKRLNAIENAEWL"
misc_feature 384785..385315
/locus_tag="HPKB_0372"
/note="Neuraminyllactose-binding hemagglutinin precursor
(NLBH); Region: NLBH; pfam05211"
/db_xref="CDD:203207"
gene 385349..385921
/locus_tag="HPKB_0373"
/db_xref="GeneID:12340784"
CDS 385349..385921
/locus_tag="HPKB_0373"
/note="Consensus COG by CONSORF: COG1787"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761898.1"
/db_xref="GI:384887387"
/db_xref="GeneID:12340784"
/translation="MKKIVFFIFFVILFSVGIYLAWHVLLEKALELKLVNSANDLLLK
LLALLGVFSMLVLFQGVISSYKKCQLKRALQKIDAMNGFEFEEYSKIFFTSKGFEVSI
TQKSGDYGADLIIEKDGIKWAVQAKRYSHKVSPKAIQEVVSSKAYYACEKACVITNSY
FTQAAQKLAQANEVILIDRDEWVRFLNEKR"
misc_feature 385397..385918
/locus_tag="HPKB_0373"
/note="Predicted endonuclease distantly related to
archaeal Holliday junction resolvase and Mrr-like
restriction enzymes [Defense mechanisms]; Region: COG1787"
/db_xref="CDD:31973"
misc_feature 385577..385906
/locus_tag="HPKB_0373"
/note="Restriction endonuclease; Region: Mrr_cat;
pfam04471"
/db_xref="CDD:203024"
gene 386032..387216
/locus_tag="HPKB_0374"
/db_xref="GeneID:12340785"
CDS 386032..387216
/locus_tag="HPKB_0374"
/note="Consensus COG by CONSORF: COG1106"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761899.1"
/db_xref="GI:384887388"
/db_xref="GeneID:12340785"
/translation="MIQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEVLYC
LVGKDMHPCTNILEIYDNIRKEPLTTESQNLMFYNLNTRKPIRITTTSDNNQTLDLQI
ELITNENQKVRESQIIPTAEQAQAFSQLKFIFKKDKEEIYNDYLNIARTPNFPPILNQ
SSYNRQFKNFEPNQSQKLLPFESAAIITPSDVARKRDVINSNAIHIMNPNIIQAVRKI
LDDNQLEKRLNQSLNQFDKNIQAIRFNANNQLKLEMKNIKEKVPLSMFGDGLMKYLHI
VSAFIANNSKTIYIDEVENGLHFSRMGLLLKNIIDFINNNKDRNLQVFMTTHSQEFVE
ILDQVIKEKNFANQTKLFCLEKSSSSIVAEPYYGENLSLYFKNHANLFGGKERFKENN
YE"
misc_feature 386032..387162
/locus_tag="HPKB_0374"
/note="Predicted ATPases [General function prediction
only]; Region: COG1106"
/db_xref="CDD:31303"
misc_feature 386035..>386175
/locus_tag="HPKB_0374"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 386116..386139
/locus_tag="HPKB_0374"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(386125..386130,386134..386142)
/locus_tag="HPKB_0374"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
gene 387116..387895
/locus_tag="HPKB_0375"
/db_xref="GeneID:12340786"
CDS 387116..387895
/locus_tag="HPKB_0375"
/note="Candidate starts by CONSORF:
387116,387131,387164,387176,387209"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761900.1"
/db_xref="GI:384887389"
/db_xref="GeneID:12340786"
/translation="MQSLIMEKIYLFISKIMPIFLEVKKGLKKIIMSKKILIYTEGKS
DRNFLGWYLNFLKCQDHFDIFDIEGKDKLISGEFLEKIRKILNNKDQTYKQVCIIFDA
DKKESQESDVGFDNKLEHIREKFKEKGIDFPREQIFLFPNNQDDGDLEDLLLEIANHK
EFINCFESYLDCIKKKEHYKPIKNIGKNMLYAYLEVFGLEYLYTKKNIFTESKVKNEY
KEDYERLEKEAINFESDLLNPLKNFLRGFAENDQKTNLKIF"
gene 387953..388948
/locus_tag="HPKB_0376"
/db_xref="GeneID:12340787"
CDS 387953..388948
/locus_tag="HPKB_0376"
/note="Consensus COG by CONSORF: COG3376"
/codon_start=1
/transl_table=11
/product="high affinity nickel transport protein"
/protein_id="YP_005761901.1"
/db_xref="GI:384887390"
/db_xref="GeneID:12340787"
/translation="MKLWFPYFLAIVFLHALGLALLFMANSASFYAAASMAYMLGAKH
AFDADHIACIDNTIRKLTQQGKNAYGVGFYFSMGHSSVVILMTIISAFAIAWAKEHTP
MLEEIGGVVGTLVSGLFLLIIGLLNAIILLDLLKIFKKSHSNESLSQQQNEEIERLLT
SRGLLNRFFKPLFNFISKSWHIYPIGFLFGLGFDTASEIALLALSSSAIKVSVVGMLS
LPILFAAGMSLFDTLDGAFMLKAYDWAFKTPLRKIYYNISITALSVFIALFIGLIELF
QVVSEKLHLKFENRLLNTLQSLEFTDLGYYLVGLFVIAFLGSFFLWKIKFSKLES"
misc_feature 388070..388897
/locus_tag="HPKB_0376"
/note="high-affinity nickel-transporter, HoxN/HupN/NixA
family; Region: nico; TIGR00802"
/db_xref="CDD:162047"
gene complement(388952..389467)
/locus_tag="HPKB_0377"
/db_xref="GeneID:12340788"
CDS complement(388952..389467)
/locus_tag="HPKB_0377"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761902.1"
/db_xref="GI:384887391"
/db_xref="GeneID:12340788"
/translation="MDILKTLQKHLGDVETSDFKTNAIEKSQQIAKFSRDMKNINESV
GALQVLQIACKKLFNKSMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAI
NDEVLSMTVGNPLNLLENAGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSNKS
LKDLLSDNLRA"
gene 389600..390910
/locus_tag="HPKB_0378"
/db_xref="GeneID:12340789"
CDS 389600..390910
/locus_tag="HPKB_0378"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761903.1"
/db_xref="GI:384887392"
/db_xref="GeneID:12340789"
/translation="MKKIWLLVWGLYSFLHAIETIEKVPTNVEDKDKAPHLLLLAGIQ
GDEPGGFNAANLFLMHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDP
EYPTIQEIKSLIAKPTIDAVLHLHDGGGYYRPIYVDAMLNPKRWGNCFIIDQDEVKGA
KFPNLLAFANNTIESINAHLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFA
NEASKELPLASRVFYHLQAIEGLLNQLNIPFKRDFELNPSSVHALINNKSLWAKISSL
PKMPLFNLRPKLNHFPLPYNTKIPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSP
FYIEFDHSLEEVKMQIDNKDQMVKIGSVVEVKESFYIHAMDNIRANVIGFSVSNESKP
NEAGYTIKFKDFQKRFSLDKQERIYRIEFYKNNAFSGMILVKFV"
misc_feature 389708..390325
/locus_tag="HPKB_0378"
/note="M14 family of metallocarboxypeptidases and related
proteins; Region: Peptidase_M14_like; cd00596"
/db_xref="CDD:199839"
misc_feature order(389729..389731,389738..389740,389870..389875,
389975..389980,389993..389995,390257..390259)
/locus_tag="HPKB_0378"
/note="active site"
/db_xref="CDD:199839"
misc_feature order(389729..389731,389738..389740,389975..389977)
/locus_tag="HPKB_0378"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:199839"
gene complement(391790..394015)
/locus_tag="HPKB_0379"
/db_xref="GeneID:12340790"
CDS complement(391790..394015)
/locus_tag="HPKB_0379"
/note="Consensus COG by CONSORF: COG2217"
/codon_start=1
/transl_table=11
/product="copper-transporting ATPase, P-type (copA)"
/protein_id="YP_005761904.1"
/db_xref="GI:384887393"
/db_xref="GeneID:12340790"
/translation="MKESFYIEGMTCTACSSGIERSLGRKSFVKKIEVSLLNKSANIE
FDENQTNLDEIFKLIEKLGYSPKKTLAKEKKGFFSPNVKLALAVVFTLFVVYLSMGAM
LSPSLLPESLLTIDNHSNFLNACLQLIGALIVMHLGRDFYIQGFKALWHRQPNMSSLI
AIGTSAALISSLWPLYLVYTNQWSYGHYYFESVCVILMFVMVGKRIENVSKDKALDAM
QALMKNAPKTALKMQNNQQIEVLVDSIVVGDILKVLPGSAIAVDGEIIEGEGELDESM
LSGEALPVYKKVGDKVFSGTFNSHTSFLMKATQNNKNSTLSQIIEMIHNAQSSKAEIS
RLADKVSSVFVPSVITIAILAFVVWLIIAPKPDFWWNFKIALEVFVSVLVISCPCALG
LATPMSILVANQKASSLGLFFKDAKSLEKARLINTIVFDKTGTLTNGKPVVKSVHSKI
ELLELLSLAGSIEKSSEHVIAKGVVEYAKERNAPLKEMSEVKVKTGFGISAKTDYQGA
KEIIKVGNSEFFNPINTLEIKENGILVFVGRAISEKEDELLGVFVLEDLPKKGVKEHI
AQIKNLGINTLLLSGDNRENVKKCALELGIDDYISNAKPQDKLNKIKELKEKGQIVMM
VGDGLNDAPSLAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIQLSQATIKNIK
ENLFWAFCYNSVFIPLACGVLYKANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFKIKD
H"
misc_feature complement(393815..394006)
/locus_tag="HPKB_0379"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature complement(order(393971..393973,393980..393988))
/locus_tag="HPKB_0379"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature complement(391871..393604)
/locus_tag="HPKB_0379"
/note="copper-(or silver)-translocating P-type ATPase;
Region: ATPase-IB1_Cu; TIGR01511"
/db_xref="CDD:188148"
misc_feature complement(392753..393433)
/locus_tag="HPKB_0379"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature complement(392042..>392338)
/locus_tag="HPKB_0379"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
gene complement(394012..394725)
/locus_tag="HPKB_0380"
/db_xref="GeneID:12340791"
CDS complement(394012..394725)
/locus_tag="HPKB_0380"
/note="Consensus COG by CONSORF: COG1183"
/codon_start=1
/transl_table=11
/product="phosphatidylserine synthase"
/protein_id="YP_005761905.1"
/db_xref="GI:384887394"
/db_xref="GeneID:12340791"
/translation="MPINPLYLFPNLFTASSIFLGMMSIFYASSYQFVMACWLVVASL
ILDGLDGRVARLTNTTSKFGIEFDSLADVIAFGVAPSLITYFYVGYNFGRIGMAVSAL
FVIFGAIRLARFNISTNTSDPYSFIGIPIPAAAVLVVLCVLLDNKYHFLEGNTEKLFL
GFIVLLGVLMVSNIRYPNFKKVKWNLKLFILVLIFLSLVFVRPLEALSVFMGLYLIYG
IIRWLFLMVKIIFNKNKSA"
misc_feature complement(394051..394710)
/locus_tag="HPKB_0380"
/note="Phosphatidylserine synthase [Lipid metabolism];
Region: PssA; COG1183"
/db_xref="CDD:224104"
misc_feature complement(394465..394710)
/locus_tag="HPKB_0380"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; pfam01066"
/db_xref="CDD:216278"
gene complement(394715..394969)
/locus_tag="HPKB_0381"
/db_xref="GeneID:12340792"
CDS complement(394715..394969)
/locus_tag="HPKB_0381"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761906.1"
/db_xref="GI:384887395"
/db_xref="GeneID:12340792"
/translation="MRACKQIFDKGLKPYDKYSVCLKLFFRFCFLKTHAYQQRYKAFA
LTLFSCKFFNACKIFIPIMDFKIVFIPILKAKLKRVSNAY"
gene complement(394972..396870)
/locus_tag="HPKB_0382"
/db_xref="GeneID:12340793"
CDS complement(394972..396870)
/locus_tag="HPKB_0382"
/note="Consensus COG by CONSORF: COG0465"
/codon_start=1
/transl_table=11
/product="cell division protein (ftsH)"
/protein_id="YP_005761907.1"
/db_xref="GI:384887396"
/db_xref="GeneID:12340793"
/translation="MKPTNEPKKPFFQSPIILAVLGGILLIFFLRSFNSDGSFSDNFL
ASSTKNVSYHEIKQLISNNEVENVSIGQTLIKASHKESNNRVIYIAKRVPDLTLVPLL
DEKKINYSGFSESNFFTDMLGWLMPILVILGLWMFMANRMQKNMGGGIFGMGSAKKLI
NAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTL
LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK
SRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFD
RQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLA
GRNNQKEVRQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTR
VNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFLEEISTGA
SNDLERATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLF
IKNLLEERYKHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEVANNLESRL
IPLEEQAS"
misc_feature complement(395035..396522)
/locus_tag="HPKB_0382"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:162266"
misc_feature complement(395848..396354)
/locus_tag="HPKB_0382"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(396220..396243)
/locus_tag="HPKB_0382"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(395917..395919,396064..396066,
396217..396240))
/locus_tag="HPKB_0382"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(396061..396078)
/locus_tag="HPKB_0382"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(395875..395877)
/locus_tag="HPKB_0382"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(395041..395667)
/locus_tag="HPKB_0382"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene complement(396879..397868)
/gene="prmA"
/locus_tag="HPKB_0383"
/db_xref="GeneID:12340794"
CDS complement(396879..397868)
/gene="prmA"
/locus_tag="HPKB_0383"
/note="Consensus COG by CONSORF: COG2264"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11 methyltransferase"
/protein_id="YP_005761908.1"
/db_xref="GI:384887397"
/db_xref="GeneID:12340794"
/translation="MLKPMYYEFFFIFPKERELFESFLLDTTHLALEESSLENLKAFD
DKETIEFISQSSWHYFTTHDPLKENLKEKPPHLKNFIILRSQKDLNDSLIPTLEAFCL
SLQQNLQSGFDFFYLSRNLASKDWLEAYKQAILPVQCAKFYIHPSWHQKPSHVAIDDS
IMIDPALAFGSGHHESTSMCLELLSNLDLKHKNALDVGCGSGILSIALKKQGVSALSA
CDTDSLAVEETLKNFSLNQIPLLAQDKVIHGSTQKIKGRFDIIVANIVADVIKSLYSE
FVRLCNHTLILSGILETHLNSVLQIYYNGFEVLEQRQRNEWVALKLLKKQSIN"
misc_feature complement(396915..397853)
/gene="prmA"
/locus_tag="HPKB_0383"
/note="ribosomal protein L11 methyltransferase; Region:
prmA; TIGR00406"
/db_xref="CDD:161861"
misc_feature complement(<397152..397322)
/gene="prmA"
/locus_tag="HPKB_0383"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(397869..398243)
/gene="cheY"
/locus_tag="HPKB_0384"
/db_xref="GeneID:12340795"
CDS complement(397869..398243)
/gene="cheY"
/locus_tag="HPKB_0384"
/note="Consensus COG by CONSORF: COG0784"
/codon_start=1
/transl_table=11
/product="chemotaxis regulatory protein CheY"
/protein_id="YP_005761909.1"
/db_xref="GI:384887398"
/db_xref="GeneID:12340795"
/translation="MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLNAN
ADTKVLITDWNMPEMNGLDLVIKVRADERFKEIPIIMITTEGGKAEVITALKAGVNNY
IVKPFTPQVLKEKLEVVLGTND"
misc_feature complement(397872..398243)
/gene="cheY"
/locus_tag="HPKB_0384"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:223855"
misc_feature complement(397884..398234)
/gene="cheY"
/locus_tag="HPKB_0384"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(397926..397931,397938..397940,
397995..397997,398061..398063,398085..398087,
398220..398225))
/gene="cheY"
/locus_tag="HPKB_0384"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(398085..398087)
/gene="cheY"
/locus_tag="HPKB_0384"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(398061..398069,398073..398078))
/gene="cheY"
/locus_tag="HPKB_0384"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(397923..397931)
/gene="cheY"
/locus_tag="HPKB_0384"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene 398534..399136
/locus_tag="HPKB_0385"
/db_xref="GeneID:12340796"
CDS 398534..399136
/locus_tag="HPKB_0385"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761910.1"
/db_xref="GI:384887399"
/db_xref="GeneID:12340796"
/translation="MYYLRILILSISFLNILNAENLSYMSSSYQIGTVFMRPLNTNKL
LQGASILQGYEVNPKNDWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYA
KNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFR
TIVLYHKVDVEIGMKIFLTPERHSLFERSFLFFVSHSWHF"
misc_feature 398678..399133
/locus_tag="HPKB_0385"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(399138..399225)
/gene="trnS"
/locus_tag="HPKB_0386"
/db_xref="GeneID:12340797"
tRNA complement(399138..399225)
/gene="trnS"
/locus_tag="HPKB_0386"
/product="tRNA-Ser"
/db_xref="GeneID:12340797"
gene complement(399268..399675)
/locus_tag="HPKB_0387"
/db_xref="GeneID:12340798"
CDS complement(399268..399675)
/locus_tag="HPKB_0387"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761911.1"
/db_xref="GI:384887400"
/db_xref="GeneID:12340798"
/translation="MLILGHPLIPSDRFIFIKNTDGVHSSTNNNIVCFEANPKNLELA
QYCCENGVHFSVIFLSHKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSK
ILFSMDLNDTELWEICAKSQIDGVISKDSLLLK"
gene complement(399678..399920)
/locus_tag="HPKB_0388"
/db_xref="GeneID:12340799"
CDS complement(399678..399920)
/locus_tag="HPKB_0388"
/note="Candidate starts by CONSORF: 399971,399920"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761912.1"
/db_xref="GI:384887401"
/db_xref="GeneID:12340799"
/translation="MLRILIPLLIIVWVLWRLFLKQKPLKGNHKDNHSYTQQTPKELE
DHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDKR"
gene complement(399914..400450)
/gene="gidB"
/locus_tag="HPKB_0389"
/db_xref="GeneID:12340800"
CDS complement(399914..400450)
/gene="gidB"
/locus_tag="HPKB_0389"
/note="Consensus COG by CONSORF: COG0357"
/codon_start=1
/transl_table=11
/product="glucose-inhibited division protein B"
/protein_id="YP_005761913.1"
/db_xref="GI:384887402"
/db_xref="GeneID:12340800"
/translation="MNPLLQDYARILLEWNQTHNLSGAKNLSELEPQITDALKPLEFI
KDFKSCLDIGSGAGLPAIPLALEKPKVQFILLEPRIKRAAFLNYLKSVLPLKNIEIIK
KRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEIACKNTE
CFMHQKRIYFYKSKESLC"
misc_feature complement(400019..400300)
/gene="gidB"
/locus_tag="HPKB_0389"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(400091..400093,400136..400144,
400217..400222,400274..400294))
/gene="gidB"
/locus_tag="HPKB_0389"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(400447..401484)
/gene="queA"
/locus_tag="HPKB_0390"
/db_xref="GeneID:12340801"
CDS complement(400447..401484)
/gene="queA"
/locus_tag="HPKB_0390"
/note="Consensus COG by CONSORF: COG0809"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine--tRNA
ribosyltransferase-isomerase"
/protein_id="YP_005761914.1"
/db_xref="GI:384887403"
/db_xref="GeneID:12340801"
/translation="MKEFDLESYDYDLPKELIANYPILPKEKAKLLVYERRSQKITHT
TFEHVLDFFPKNALVVLNDTKVIKARLFGSKHAFLPSKTTEVFFHRFFENNRALTQIK
GKIKVGDKIFFDTHYYAEVLELLHNGQRLIAFYDNKTPLNQANILKLLEQHGHMPLPP
YIKRADESLDTHEYQSVFAKHMGAVAAPTASLHFSQNTLEKLLKDFKHAFLTLHVGAG
TFLGVETKDIREHQIHTEMLRIPKKSQEILQKSQEILCIGTTALRSVEYFKRLENPNQ
EAFECDIFLHLANPILHVNYLLTNFHLPKSSLLMLVSAMVGLEKTKEIYKIAIEKKYR
FYSYGDGMLIL"
misc_feature complement(400450..401472)
/gene="queA"
/locus_tag="HPKB_0390"
/note="Queuosine biosynthesis protein; Region:
Queuosine_synth; pfam02547"
/db_xref="CDD:202279"
misc_feature complement(400450..401472)
/gene="queA"
/locus_tag="HPKB_0390"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Region: queA; TIGR00113"
/db_xref="CDD:211549"
gene complement(401488..402246)
/locus_tag="HPKB_0391"
/db_xref="GeneID:12340802"
CDS complement(401488..402246)
/locus_tag="HPKB_0391"
/note="Consensus COG by CONSORF: COG0805"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761915.1"
/db_xref="GI:384887404"
/db_xref="GeneID:12340802"
/translation="MFEDLKPHLQELRKRLMVSVATILVAFLGCFHFWKNIFEFVKNS
YKGTLIQLSPIEGVMVAVKISFSAAIVISMPIIFWQLWLFIAPGLYKNEKKVILPFVF
FGSGMFLIGAAFSYYVVFPFIIEYLATFGSDVFAANISASSYVSFFTRLILGFGVAFE
LPVLAYFLAKVGLITDASLKAYFKYAIVVIFIVAAIITPPDVVSQIFMALPLVGLYGL
SILIAKIVNPAPKDSENDNEEDSENNAKENTKSE"
misc_feature complement(401599..402234)
/locus_tag="HPKB_0391"
/note="Twin arginine targeting (Tat) protein translocase
TatC; Region: tatC; TIGR00945"
/db_xref="CDD:211615"
gene complement(402239..402715)
/locus_tag="HPKB_0392"
/db_xref="GeneID:12340803"
CDS complement(402239..402715)
/locus_tag="HPKB_0392"
/note="Consensus COG by CONSORF: COG1826"
/codon_start=1
/transl_table=11
/product="sec-independent translocase"
/protein_id="YP_005761916.1"
/db_xref="GI:384887405"
/db_xref="GeneID:12340803"
/translation="MFGMGFFEILVVLVVAIIFLGPEKFPQAVVDVVKFFRAVKKTLN
DAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDL
MQDYQKSLETNTTPNHLNEEVSNKEALNKEVSSDESLKEVKLANNTKEHDKEKEHV"
misc_feature complement(402251..402715)
/locus_tag="HPKB_0392"
/note="sec-independent translocase; Provisional; Region:
PRK04098"
/db_xref="CDD:179738"
gene complement(402783..403793)
/gene="ruvB"
/locus_tag="HPKB_0393"
/db_xref="GeneID:12340804"
CDS complement(402783..403793)
/gene="ruvB"
/locus_tag="HPKB_0393"
/note="Consensus COG by CONSORF: COG2255"
/codon_start=1
/transl_table=11
/product="Holliday junction DNA helicase B"
/protein_id="YP_005761917.1"
/db_xref="GI:384887406"
/db_xref="GeneID:12340804"
/translation="MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISIC
AAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNL
QAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIITKAAAKLNQDIKEESADEIAKRSRGTP
RIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFDEADLAYLSLLANAQGR
PVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPKTHALLKIPTLNPQT
LF"
misc_feature complement(402810..403760)
/gene="ruvB"
/locus_tag="HPKB_0393"
/note="Holliday junction DNA helicase RuvB; Reviewed;
Region: ruvB; PRK00080"
/db_xref="CDD:178847"
misc_feature complement(403254..403706)
/gene="ruvB"
/locus_tag="HPKB_0393"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(403593..403616)
/gene="ruvB"
/locus_tag="HPKB_0393"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(403314..403316,403461..403463,
403590..403613))
/gene="ruvB"
/locus_tag="HPKB_0393"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(403458..403475)
/gene="ruvB"
/locus_tag="HPKB_0393"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(403278..403280)
/gene="ruvB"
/locus_tag="HPKB_0393"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(402810..403031)
/gene="ruvB"
/locus_tag="HPKB_0393"
/note="Holliday junction DNA helicase ruvB C-terminus;
Region: RuvB_C; pfam05491"
/db_xref="CDD:203257"
gene complement(403794..404606)
/gene="panB"
/locus_tag="HPKB_0394"
/db_xref="GeneID:12340805"
CDS complement(403794..404606)
/gene="panB"
/locus_tag="HPKB_0394"
/note="Consensus COG by CONSORF: COG0413"
/codon_start=1
/transl_table=11
/product="3-methyl-2-oxobutanoate
hydroxymethyltransferase"
/protein_id="YP_005761918.1"
/db_xref="GI:384887407"
/db_xref="GeneID:12340805"
/translation="MSMQTAPIKKITLNHLQAKKNQEKIIAITAYDALFSQIFDPLVD
VILVGDSLNMSFFNQNDTLSTSVGMMLYHTKAVCAGAKTPFIITDMPFGSYKDEKTAL
KNAIRVYKETQASAIKLEGGKEKAKLVKTLTDEGVIVVGHIGLMPQFVRLDGGYKIKG
KNEEQQKKLLEDALSLEEAGAGLLVLEGITAPIAQKITQTIKIPTIGIGSGKDCDGQI
LVWSDMLGFFDSFKPKFVREYLKGKELVQNAIKQYADDVKKGNFPNELESYH"
misc_feature complement(403818..404570)
/gene="panB"
/locus_tag="HPKB_0394"
/note="Ketopantoate hydroxymethyltransferase (KPHMT) is
the first enzyme in the pantothenate biosynthesis pathway.
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes
the first committed step in the biosynthesis of
pantothenate (vitamin B5), which is a...; Region:
KPHMT-like; cd06557"
/db_xref="CDD:119342"
misc_feature complement(order(403866..403880,403887..403889,
403929..403934,403941..403943,404061..404063,
404145..404156,404160..404165,404193..404210,
404262..404264,404277..404282,404289..404291,
404301..404303,404328..404333,404370..404372,
404379..404381,404388..404393,404400..404402,
404415..404420,404430..404447,404451..404453,
404493..404495,404502..404513,404565..404570))
/gene="panB"
/locus_tag="HPKB_0394"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:119342"
misc_feature complement(order(403947..403949,403953..403955,
404046..404048,404166..404168,404181..404183,
404253..404255,404340..404342,404454..404462,
404466..404468,404520..404522))
/gene="panB"
/locus_tag="HPKB_0394"
/note="active site"
/db_xref="CDD:119342"
misc_feature complement(order(404253..404255,404340..404342,
404457..404459))
/gene="panB"
/locus_tag="HPKB_0394"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119342"
gene 404755..405477
/locus_tag="HPKB_0395"
/db_xref="GeneID:12340806"
CDS 404755..405477
/locus_tag="HPKB_0395"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761919.1"
/db_xref="GI:384887408"
/db_xref="GeneID:12340806"
/translation="MGLKKYVILWFLMGFYAGLNALDYDTLDPKYYKYIKYYKAYEDK
EVEELIKDLKRANAKSGLILGINTGFFYNHEIMVRTNSSSITGNILNYLFAYGLRFGY
QTFRPSFFAHLVKPNIIGRRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDIPLPFV
GKYLYMGGYMGLGLGVVAHGVNYTAEWGMSFNAGLALTVLEKNRIEFEFKILNNFPFL
QSNSSKETWWGAIASIGYQYVF"
gene 405455..406321
/locus_tag="HPKB_0396"
/db_xref="GeneID:12340807"
CDS 405455..406321
/locus_tag="HPKB_0396"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761920.1"
/db_xref="GI:384887409"
/db_xref="GeneID:12340807"
/translation="MGINMCSKKIRNFILCFGFILGLNAEENTAQENMTEENTPKDAP
ILLEEKRAQTLEFEENKEAKKKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQM
DKNKSGFFIGVILGDIGINAHPNARSYESFEPSSNIQASPLLYGLRSGYQKYFANGIS
ALRFYGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWN
GMYQNLKEIKGYSQPNAFGLVLNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKS
TNIYYISYNYLL"
misc_feature 405890..406312
/locus_tag="HPKB_0396"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 406330..407268
/locus_tag="HPKB_0397"
/db_xref="GeneID:12340808"
CDS 406330..407268
/locus_tag="HPKB_0397"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761921.1"
/db_xref="GI:384887410"
/db_xref="GeneID:12340808"
/translation="MLKFKYCLIYIALILGLQATDYDNLEEENQQLDEKINHLKQQLT
EKGVSPKEMDKDKFEEEYIDRSYPKISSKKKEKLLKSFSIANDRSGVFLGGGYAYGEL
NLSYQGEMLDRYGANAPSAFKNNININALVSMISVKFGYQKYFVPYFGTRFYGDLLLG
GGALKENALKQGSFIYVLGAMNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDKPN
QNGRDLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVE
EGAIYQNKEDDERLLVSANNQFKRSSFLLVNYAFIF"
misc_feature 406735..407265
/locus_tag="HPKB_0397"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 407279..408601
/locus_tag="HPKB_0398"
/db_xref="GeneID:12340809"
CDS 407279..408601
/locus_tag="HPKB_0398"
/note="Consensus COG by CONSORF: COG0739"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761922.1"
/db_xref="GI:384887411"
/db_xref="GeneID:12340809"
/translation="MELRFKILALVVLILGGYLIFNALITKPKALSFSLNSKEGVLND
NDGALFWDLKKPIKIKIVAPKGIKRYELKVTTQDDLILYEKENLVLDKPKSLEVPLIK
PEIMGLEDKCLLYEIQANDWSYANFFNGNKASFKQEVCVDTIKPSITILSRSPSIAYG
GSAIVVFEALDKNLSQAFVRVKKKDFEAFRLLEFKQRNVFIALVPWSYENKDFKAFIV
AKDKAYNSNTTPLLFKRKTHRLREKDIDLSALKDKIAKQEKSQNYTEQTLLERFSNAR
PKDLEKIHKIALEQGDFYKDFSHFQALKPLSGPFKMVSNFLENRRILKDNQVLFQFLH
LGVDLIPGKDLSLAFDSSVKRVFKGELDFYGNSLINCYGLGLCVFLAHLKDDKSVGSS
GLKLGNGLHLGTLLQGVFVRPNEWLNEQWIKTNIIAPIEQAKWLLMKG"
misc_feature <407909..408598
/locus_tag="HPKB_0398"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:31082"
gene 408604..409191
/gene="minC"
/locus_tag="HPKB_0399"
/db_xref="GeneID:12340810"
CDS 408604..409191
/gene="minC"
/locus_tag="HPKB_0399"
/note="Consensus COG by CONSORF: COG0850. Candidate starts
by CONSORF: 408538,408580,408604"
/codon_start=1
/transl_table=11
/product="septum site-determining protein"
/protein_id="YP_005761923.1"
/db_xref="GI:384887412"
/db_xref="GeneID:12340810"
/translation="MLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLIIFKYDI
EPEVKAILHKHQLLFLETNRPLNGRHIKTMSIKEETNHPTPNNSKIEPKTTIYERHIR
SGEEIYSANHLIFLGNIHNGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQIVF
QNKILSLKEVERLLVNKNIKIITKNDDILDIKEVL"
misc_feature 408607..409119
/gene="minC"
/locus_tag="HPKB_0399"
/note="septum formation inhibitor; Reviewed; Region: minC;
PRK00556"
/db_xref="CDD:179064"
misc_feature 408883..>409119
/gene="minC"
/locus_tag="HPKB_0399"
/note="Septum formation inhibitor MinC, C-terminal domain;
Region: MinC_C; pfam03775"
/db_xref="CDD:146423"
gene 409188..410075
/gene="lpxC"
/locus_tag="HPKB_0400"
/db_xref="GeneID:12340811"
CDS 409188..410075
/gene="lpxC"
/locus_tag="HPKB_0400"
/note="Consensus COG by CONSORF: COG0774"
/codon_start=1
/transl_table=11
/product="UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine
deacetylase"
/protein_id="YP_005761924.1"
/db_xref="GI:384887413"
/db_xref="GeneID:12340811"
/translation="MKQTTINHSVELVGIGLHKGVPVKLVLEPLEENQGIVFYRSDLG
VKLPLKPENIVDTKMATVLGKDNARISTIEHLLSAVHAYGIDNLKISVDNEEIPIMDG
SALAYCMLLDEAGIKELDAPKKVMEIKQVVEVREGDKFVKIEPDSQLSLNFTIDFNHP
VIAKQAHHFIFSKTAYKEQVAKARTFGFLQEVNYLRSIGLAKGGSLNNCIVLDENSIL
NKEGLRCEKEFVCHKILDAMGDLMVLGMPVMGKYTSFSGSHKLNSMLVKAILADAKNY
EVLIATDPAKEFALQKAFA"
misc_feature 409188..410069
/gene="lpxC"
/locus_tag="HPKB_0400"
/note="UDP-3-0-acyl N-acetylglucosamine deacetylase;
Region: lpxC; TIGR00325"
/db_xref="CDD:188041"
misc_feature 409188..410009
/gene="lpxC"
/locus_tag="HPKB_0400"
/note="UDP-3-O-acyl N-acetylglycosamine deacetylase;
Region: LpxC; pfam03331"
/db_xref="CDD:202596"
gene 410097..410570
/locus_tag="HPKB_0401"
/db_xref="GeneID:12340812"
CDS 410097..410570
/locus_tag="HPKB_0401"
/note="Consensus COG by CONSORF: COG1214"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761925.1"
/db_xref="GI:384887414"
/db_xref="GeneID:12340812"
/translation="MELDLALISLGEKVLLGVYQNDFLCASYTSKAKTSEALVEVFSQ
LFADFKNPTLPAIKGVYYAKGPGSFTSLKLTHIFLHTLALIHDFELYSTTGFDFNGNT
PILVYANKYFVSKEMESLSDFKDLKIVPKDFMLPSFLEKDKFTQLNTPFYILPPI"
misc_feature 410097..410567
/locus_tag="HPKB_0401"
/note="Inactive homolog of metal-dependent proteases,
putative molecular chaperone [Posttranslational
modification, protein turnover, chaperones]; Region:
COG1214"
/db_xref="CDD:31407"
gene 410625..411506
/gene="thrB"
/locus_tag="HPKB_0402"
/db_xref="GeneID:12340813"
CDS 410625..411506
/gene="thrB"
/locus_tag="HPKB_0402"
/note="Consensus COG by CONSORF: COG0083"
/codon_start=1
/transl_table=11
/product="homoserine kinase"
/protein_id="YP_005761926.1"
/db_xref="GI:384887415"
/db_xref="GeneID:12340813"
/translation="MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSSFHAVKLVGE
GEGIPKFLTNNIFTKVFYEILKKHGNDGSFKFLLHNRVPITRGMGSSSAMIVGAVASA
FAFLGFAFDRENIVNTALIYENHPDNITPAVFGGYNAAFVEKKKVISLKTTIPSFLKA
VMVIPNRAISTKQSRHLLPKRYSVQESVFNLSHASLMTMAIVQGKWDLLRCCSKDRMH
QYKRMQTYPVLFAIQKLALENNALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKF
RVAVLDFDNDGVLIEKD"
misc_feature 410625..411497
/gene="thrB"
/locus_tag="HPKB_0402"
/note="homoserine kinase; Region: thrB; TIGR00191"
/db_xref="CDD:129295"
misc_feature 410847..411032
/gene="thrB"
/locus_tag="HPKB_0402"
/note="GHMP kinases N terminal domain; Region:
GHMP_kinases_N; pfam00288"
/db_xref="CDD:215839"
gene 411478..411747
/locus_tag="HPKB_0403"
/db_xref="GeneID:12340814"
CDS 411478..411747
/locus_tag="HPKB_0403"
/note="Consensus COG by CONSORF: COG2740. Candidate starts
by CONSORF: 411472,411478"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761927.1"
/db_xref="GI:384887416"
/db_xref="GeneID:12340814"
/translation="MMESLLRKTEIKIRMCVACRMRQPQKDLLRLKSFENQIMEFDGK
GRSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNIITWIKERSIA"
misc_feature 411493..411741
/locus_tag="HPKB_0403"
/note="Predicted nucleic-acid-binding protein implicated
in transcription termination [Transcription]; Region:
COG2740"
/db_xref="CDD:32622"
misc_feature order(411517..411519,411565..411567,411622..411624)
/locus_tag="HPKB_0403"
/note="putative RNA binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29345"
gene 411744..414596
/gene="infB"
/locus_tag="HPKB_0404"
/db_xref="GeneID:12340815"
CDS 411744..414596
/gene="infB"
/locus_tag="HPKB_0404"
/note="Consensus COG by CONSORF: COG0532"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_005761928.1"
/db_xref="GI:384887417"
/db_xref="GeneID:12340815"
/translation="MSGMVNLKEFLAELGKTQKELKNVIEQAKDIGLELKTNSKMTPE
QAGKLYKYIVDGIKEQIQANKPTKNPEQDNKDDLNMAATPKPLNKKVSKTPKKEETKS
QPKPKKTKEKKKEAPAPIAKKKGGIEIVNTFEDQTPPVENTPKVVSHSQVEKAKQKLQ
EIQKSREALNKLTQSNANNANSANNANNVNNAKKEISEVKKQEQEIKRYENIKRRTGF
RVIKRNDEAENETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQEVKKAKKPSKPKPT
PTAKNNKSHKIDFSDARDFKGNDIYDDETDEILLFDLHEQDNLNKEEEEKEIRQNIND
RVRAQRKNPWMNESGIKRQSKKKRAFRNDNSQKVIQSAISIPEEVRVYEFAQKANLNL
ADVIKTLFNLGLMVTKNDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEVLEGVKKER
PPVVTIMGHVDHGKTSLLDKIHDKRVAHTEAGGITQHIGAYMVEKNDKWVSFIDTPGH
EAFSQMRNRGAQVTDIAVIVIAADDGVKQQTIEALEHAKAANVPVIFAMNKMDKPNVN
PDKLKAECAELGYNPVDWGGEYEFIPVSAKTGDGIDNLLETILIQADIMELKAIEEGS
ARAVVLEGSVEKGRGAVATVIVQSGTLSVGDSFFAETAFGKVRTMTDDQGKSIQNLKP
SMVALITGLSEVPPAGSVLIGVENDSIARLQAQKRATYLRQKALSKSTKVSFDELSEM
VANKELKNIPVVIKADTQGSLEAIKNSLLELNNEEVAIQVIHSGVGGITENDLSLVSS
SDHAVILGFNIRPTGNVKNKAKEYNVSIKTYTVIYALIEEMRSLLLGLMSPIIEEEHT
GQAEVRETFNIPKVGTIAGCVVSDGVIARGIKARLIRDGVVIHTGEILSLKRFKDDVK
EVSKGYECGIMLDNYNEIKVGDVFETYKEIHKKRTL"
misc_feature 412845..414593
/gene="infB"
/locus_tag="HPKB_0404"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature 412869..413024
/gene="infB"
/locus_tag="HPKB_0404"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature 413097..413588
/gene="infB"
/locus_tag="HPKB_0404"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature 413115..413138
/gene="infB"
/locus_tag="HPKB_0404"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature order(413118..413120,413124..413126,413136..413141,
413148..413150,413157..413162,413208..413213,
413265..413270,413337..413342,413445..413447,
413457..413459)
/gene="infB"
/locus_tag="HPKB_0404"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature order(413121..413141,413268..413270,413415..413420,
413424..413429,413523..413531)
/gene="infB"
/locus_tag="HPKB_0404"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature 413190..413210
/gene="infB"
/locus_tag="HPKB_0404"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature 413196..413198
/gene="infB"
/locus_tag="HPKB_0404"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature 413253..413264
/gene="infB"
/locus_tag="HPKB_0404"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature 413259..413315
/gene="infB"
/locus_tag="HPKB_0404"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature 413415..413426
/gene="infB"
/locus_tag="HPKB_0404"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature 413523..413531
/gene="infB"
/locus_tag="HPKB_0404"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature 413616..413897
/gene="infB"
/locus_tag="HPKB_0404"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature 413937..414263
/gene="infB"
/locus_tag="HPKB_0404"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature 414312..414563
/gene="infB"
/locus_tag="HPKB_0404"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene 414596..414931
/gene="rbfA"
/locus_tag="HPKB_0405"
/db_xref="GeneID:12340816"
CDS 414596..414931
/gene="rbfA"
/locus_tag="HPKB_0405"
/note="Consensus COG by CONSORF: COG0858"
/codon_start=1
/transl_table=11
/product="ribosome-binding factor A"
/protein_id="YP_005761929.1"
/db_xref="GI:384887418"
/db_xref="GeneID:12340816"
/translation="MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHH
AFVFVLSQDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDNSLEKQLRLDAIFN
EIAKGKDND"
misc_feature <414668..414916
/gene="rbfA"
/locus_tag="HPKB_0405"
/note="Ribosome-binding factor A; Region: RBFA; cl00542"
/db_xref="CDD:241936"
gene 414924..415364
/locus_tag="HPKB_0406"
/db_xref="GeneID:12340817"
CDS 414924..415364
/locus_tag="HPKB_0406"
/note="Consensus COG by CONSORF: COG0779. Candidate starts
by CONSORF: 414900,414924"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761930.1"
/db_xref="GI:384887419"
/db_xref="GeneID:12340817"
/translation="MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGA
VSLDICQQVSEIISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL
TNKESFQAVLKDANDLSADFELEDHATKSVEYKDLKKVKTLFEW"
misc_feature 414966..415349
/locus_tag="HPKB_0406"
/note="Uncharacterized BCR, YhbC family COG0779; Region:
DUF150; pfam02576"
/db_xref="CDD:202291"
misc_feature 414966..>415262
/locus_tag="HPKB_0406"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
misc_feature 415158..415361
/locus_tag="HPKB_0406"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature order(415224..415226,415239..415241,415245..415247,
415263..415265,415284..415286,415308..415316,
415320..415325,415329..415346)
/locus_tag="HPKB_0406"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature order(415269..415271,415275..415277,415320..415322)
/locus_tag="HPKB_0406"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene complement(415472..417460)
/locus_tag="HPKB_0407"
/db_xref="GeneID:12340818"
CDS complement(415472..417460)
/locus_tag="HPKB_0407"
/note="Consensus COG by CONSORF: COG0365"
/codon_start=1
/transl_table=11
/product="acetyl-CoA synthetase"
/protein_id="YP_005761931.1"
/db_xref="GI:384887420"
/db_xref="GeneID:12340818"
/translation="MQSDDDLEFAKKVFNPNRAFAKQARIKNMCEYKDLVHEANEDYE
HFWGELAKQKLTWFKPFDKVLNSNNAPFFKWFENGKINVSYNCIDRHLKDKKNKVAII
FEGEMGDYNVITYRKLHSEVNKTANLLKNEFNVKKGDRVIIYMPMIVESVYMMLACAR
IGAIHSIVFAGFSPEALRDRINDAQAKLVITADGTFRKGKPYMLKPALDKALENNACP
SVERALIVIRNAKEIDYVRGRDFVYNEMVNYQSDKCEPEMMDSEDPLFLLYTSGSTGK
PKGVQHSSAGYLLWAQMTMEWVFDIRDNDNFWCTADIGWITGHTYVVYGPLACGATTL
ILEGTMSYPDYGRWWRMIEEYRVDKFYTSPTAIRMLHAKGENEPLKYNLESLKVLGTV
GEPINPTAWKWFYEKIGNSKCSIVDTWWQTETGGHIISPLPGATPIRASCATLPLPGI
HAEVLNEDGTKTKPGEQGFLCITKPWPSMVRNIWGDEKRYIDSYFSQIKLNGEYVYLS
GDGAIMDENGYITIIGRTDDIVNVSGHRIGTAEVESAISKHEMVVECAVVGIPDAIKG
EGLFAFVVLCDGAKCNLGESLELLKEMNHILSIEIGKIAKLDNVMYVPGLPKTRSGKI
MRRLLKSIAKKEPITQDLSTLEDVNVVKEIMSIVQMEE"
misc_feature complement(415475..417424)
/locus_tag="HPKB_0407"
/note="acetyl-CoA synthetase; Provisional; Region:
PRK00174"
/db_xref="CDD:178915"
misc_feature complement(417143..417379)
/locus_tag="HPKB_0407"
/note="Domain of unknown function (DUF3448); Region:
DUF3448; pfam11930"
/db_xref="CDD:204782"
misc_feature complement(415790..417121)
/locus_tag="HPKB_0407"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(415520..415651)
/locus_tag="HPKB_0407"
/note="Domain of unknown function (DUF4009); Region:
DUF4009; pfam13193"
/db_xref="CDD:205374"
gene 417661..418773
/locus_tag="HPKB_0408"
/db_xref="GeneID:12340819"
CDS 417661..418773
/locus_tag="HPKB_0408"
/note="Consensus COG by CONSORF: COG1408"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761932.1"
/db_xref="GI:384887421"
/db_xref="GeneID:12340819"
/translation="MLISIAFLLVLCLLNYSSFRMLKSFLTLKKISQYAYLGFFILLS
VGEAAFAFYRNTMPSHLFVLTSACSFVSFIVFVFALSFYGFSYSIEKIDFLHSRRKSL
KNFLKLGFYLALLGYFWRGFYEGLARPKIKETPIYLDKLDKELKIILLTDMHVGSLLQ
KDFVDYIVEEVNQKEVDMVLIGGDLVDENIEKVKSFLLPLNNLKSAYGTFYVPGNHEY
YHGIEPILSFLDTLNLTILGNECVHLGGINLCGVYDYFARKHQNFAPDIDKALKKRNE
SKPTILLAHQPKQIRSLKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLYGLYKHSD
TTQIYVSSGAGYWGVPLRFLAPSEIAYLRLLPKNQA"
misc_feature 417727..418761
/locus_tag="HPKB_0408"
/note="Predicted phosphohydrolases [General function
prediction only]; Region: COG1408"
/db_xref="CDD:31598"
misc_feature 418117..418752
/locus_tag="HPKB_0408"
/note="Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain; Region: MPP_YkuE_C;
cd07385"
/db_xref="CDD:163628"
misc_feature order(418120..418122,418210..418212,418303..418308,
418513..418515,418576..418578,418582..418584)
/locus_tag="HPKB_0408"
/note="putative active site [active]"
/db_xref="CDD:163628"
misc_feature order(418120..418122,418210..418212,418303..418305,
418513..418515,418576..418578,418582..418584)
/locus_tag="HPKB_0408"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:163628"
gene 419127..419798
/locus_tag="HPKB_0409"
/db_xref="GeneID:12340820"
CDS 419127..419798
/locus_tag="HPKB_0409"
/note="Consensus COG by CONSORF: COG0745"
/codon_start=1
/transl_table=11
/product="putative transcriptional regulator"
/protein_id="YP_005761933.1"
/db_xref="GI:384887422"
/db_xref="GeneID:12340820"
/translation="MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN
YDLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSI
KALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLIHLARHRD
QIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCYPK
PACEE"
misc_feature 419127..419780
/locus_tag="HPKB_0409"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 419136..419465
/locus_tag="HPKB_0409"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(419145..419150,419289..419291,419349..419351,
419406..419408,419415..419420)
/locus_tag="HPKB_0409"
/note="active site"
/db_xref="CDD:29071"
misc_feature order(419274..419279,419283..419291)
/locus_tag="HPKB_0409"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 419415..419423
/locus_tag="HPKB_0409"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 419487..419768
/locus_tag="HPKB_0409"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(419559..419561,419616..419621,419673..419675,
419682..419684,419706..419711,419742..419744,
419757..419759)
/locus_tag="HPKB_0409"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(420317..421360)
/locus_tag="HPKB_0410"
/db_xref="GeneID:12340821"
CDS complement(420317..421360)
/locus_tag="HPKB_0410"
/note="Consensus COG by CONSORF: COG2404. Candidate starts
by CONSORF: 421363,421360"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761934.1"
/db_xref="GI:384887423"
/db_xref="GeneID:12340821"
/translation="MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYE
ILNAIAQSKESEFLILISDLNLNLNEAQYLQDKIQEHRLQNRNIQIQLLDHHISGKEV
AESFHWYFLDTNRCATKIVYEFLKKHYAILEPKNTTWLEPLVEMVNSVDIWDTQGYGF
ELGKVCMRMINQSSELNRFMFDDENRDYKLKLLEEVKNYLFLENAPVVYDNDLFKLKK
IALGGDPDAETMDNISSNAQTRLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLT
QNPDFDFYMDVNSKGNVSLRANGNCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYR
DIKEQIEEIFNNA"
misc_feature complement(420329..421354)
/locus_tag="HPKB_0410"
/note="Predicted phosphohydrolase (DHH superfamily)
[General function prediction only]; Region: COG2404"
/db_xref="CDD:32540"
misc_feature complement(420920..421354)
/locus_tag="HPKB_0410"
/note="DHH family; Region: DHH; pfam01368"
/db_xref="CDD:201752"
gene complement(421391..423532)
/gene="flhA"
/locus_tag="HPKB_0411"
/db_xref="GeneID:12340822"
CDS complement(421391..423532)
/gene="flhA"
/locus_tag="HPKB_0411"
/note="Consensus COG by CONSORF: COG1298. Candidate starts
by CONSORF: 423592,423532"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FlhA"
/protein_id="YP_005761935.1"
/db_xref="GI:384887424"
/db_xref="GeneID:12340822"
/translation="MQSKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIIL
IGLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILTQGYKGPSAVSDIITAFGEFS
VSGNYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLI
DDKEAKKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMS
LSFSASTFTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSK
TLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWLISREGKDGLLTKLENYLSQKFG
LDLNEKPHSSKIKPHTQTTRAKTQEELKGEEEQAIDEVLKIEFLELALGYQLISLADM
KQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPD
KFLAMNTGFVNKEIEGIPTKEPAFGMDALWIETKNKEEAIIQGYTIIDPSTVIATHTS
ELVKKYAEDFITKDEVKSLLERLAKDYPTIVEESKKIPTGAIRSVLQALLHEKIPIKD
MLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAFKSEDGRLKFLTFSTDSEQFL
LNKLRENGTSKSLLLNVGELQKLIEVVSEEAMKVLQKGIAPVILIVEPNLRKALSNQM
EQARIDVIVLSHAELDPNSNFEALGTIHINF"
misc_feature complement(421406..423391)
/gene="flhA"
/locus_tag="HPKB_0411"
/note="flagellar biosynthesis protein FlhA; Region: FlhA;
TIGR01398"
/db_xref="CDD:162338"
misc_feature complement(421433..423391)
/gene="flhA"
/locus_tag="HPKB_0411"
/note="FHIPEP family; Region: FHIPEP; pfam00771"
/db_xref="CDD:201434"
gene 423731..424003
/gene="rpsO"
/locus_tag="HPKB_0412"
/db_xref="GeneID:12340823"
CDS 423731..424003
/gene="rpsO"
/locus_tag="HPKB_0412"
/note="Consensus COG by CONSORF: COG0184"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_005761936.1"
/db_xref="GI:384887425"
/db_xref="GeneID:12340823"
/translation="MALNLEKKQEIIKAFATKENDTGSCEVQVALLNERIKLLTEHLK
ANPKDHSSRLGLLKLVAQRRNLLKYIKRTDHARYVVLIEKLGIKDR"
misc_feature 423749..423988
/gene="rpsO"
/locus_tag="HPKB_0412"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:238213"
misc_feature order(423752..423754,423803..423805,423812..423814,
423833..423835,423845..423847,423854..423856,
423866..423868,423872..423877,423881..423886,
423923..423925,423935..423937)
/gene="rpsO"
/locus_tag="HPKB_0412"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238213"
misc_feature order(423818..423820,423827..423832,423839..423841,
423848..423850,423968..423970,423980..423982)
/gene="rpsO"
/locus_tag="HPKB_0412"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:238213"
misc_feature order(423908..423910,423920..423922,423983..423988)
/gene="rpsO"
/locus_tag="HPKB_0412"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:238213"
gene 424034..425323
/locus_tag="HPKB_0413"
/db_xref="GeneID:12340824"
CDS 424034..425323
/locus_tag="HPKB_0413"
/note="Consensus COG by CONSORF: COG3307"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761937.1"
/db_xref="GI:384887426"
/db_xref="GeneID:12340824"
/translation="MLKERLKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFL
FFRCYFQASLKEIFGINHLKTMPFKWLTLAFWGVFLSIFPNMFNMHDSQTFRYNLFAL
NMSLTYACGTLCLLFASCLRIKLNQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGF
STVKEYVVLVSVSILGCYIYVLYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFIA
TFLILSCFILYAKKSLKPLGYMVVVSLVLSALYMGSNALEKRGAIEQSRVQNQSFEED
LKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKD
LILCYERYDNQIIHVLATRGIIGFLIWLFFLLVIVKIFWSGIKQNSLISLFILTTLTF
YLIFGIGFDPFDFFITGSFFVGMVMMAVFLKKDKSAF"
misc_feature 424172..425089
/locus_tag="HPKB_0413"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:33116"
misc_feature 424616..425089
/locus_tag="HPKB_0413"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:203125"
gene 425446..425949
/locus_tag="HPKB_0414"
/db_xref="GeneID:12340825"
CDS 425446..425949
/locus_tag="HPKB_0414"
/note="Consensus COG by CONSORF: COG0757"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate dehydratase"
/protein_id="YP_005761938.1"
/db_xref="GI:384887427"
/db_xref="GeneID:12340825"
/translation="MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLD
VELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVH
LTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQQNNPN
NPINNQK"
misc_feature 425446..425874
/locus_tag="HPKB_0414"
/note="Dehydroquinase class II; Region: DHquinase_II;
pfam01220"
/db_xref="CDD:189894"
misc_feature 425449..425874
/locus_tag="HPKB_0414"
/note="Dehydroquinase (DHQase), type II. Dehydroquinase
(or 3-dehydroquinate dehydratase) catalyzes the reversible
dehydration of 3-dehydroquinate to form
3-dehydroshikimate. This reaction is part of two metabolic
pathways: the biosynthetic shikimate pathway...; Region:
DHQase_II; cd00466"
/db_xref="CDD:238262"
misc_feature order(425473..425475,425479..425481,425602..425616,
425623..425625,425632..425634,425680..425682,
425701..425703,425710..425715,425722..425724,
425782..425784)
/locus_tag="HPKB_0414"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:238262"
misc_feature order(425494..425496,425509..425511,425671..425673,
425677..425682,425689..425691,425710..425712,
425749..425757,425782..425784)
/locus_tag="HPKB_0414"
/note="active site"
/db_xref="CDD:238262"
misc_feature order(425758..425760,425764..425769,425800..425805,
425809..425820,425824..425832,425839..425841,
425851..425853,425863..425865,425872..425874)
/locus_tag="HPKB_0414"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238262"
gene 425963..427036
/locus_tag="HPKB_0415"
/db_xref="GeneID:12340826"
CDS 425963..427036
/locus_tag="HPKB_0415"
/note="Consensus COG by CONSORF: COG0006. Candidate starts
by CONSORF: 425960,425963"
/codon_start=1
/transl_table=11
/product="Xaa-Pro aminopeptidase"
/protein_id="YP_005761939.1"
/db_xref="GI:384887428"
/db_xref="GeneID:12340826"
/translation="MSGLERDAHFTLNENAMFFECAYSCDNALFLQLEDRSFFITDSR
YTQEAKESIQPKNSVLAEVVESSDLVQSAIDLIAKSSLKKLFFDPNQVNLQTYKRLNL
ALGDKVTLEGVPSYHRQKRIIKNDHEIQLLKKSQALNIEAFENFAEYVKKVFDEKESL
SERYLQHKVKDFLTREGVYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGI
KYERYCSDRTRTAFFDPKDFVFKREQSFKDKEHQKIYDIVKEAQEKAISGIRAGMTGK
EADSLARGVISDHGYGQYFTHSTGHGIGLDIHELPYISSRSETILEEGMVFSVEPGIY
IPGFFGVRIEDLVVIKNSRAELL"
misc_feature 426011..426280
/locus_tag="HPKB_0415"
/note="Creatinase/Prolidase N-terminal domain; Region:
Creatinase_N; pfam01321"
/db_xref="CDD:201727"
misc_feature 426014..427033
/locus_tag="HPKB_0415"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:30356"
misc_feature 426347..427012
/locus_tag="HPKB_0415"
/note="Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline; Region: APP-like; cd01092"
/db_xref="CDD:29977"
misc_feature order(426551..426553,426605..426607,426638..426640,
426863..426865,426950..426952,426992..426994)
/locus_tag="HPKB_0415"
/note="active site"
/db_xref="CDD:29977"
gene 427033..427524
/locus_tag="HPKB_0416"
/db_xref="GeneID:12340827"
CDS 427033..427524
/locus_tag="HPKB_0416"
/note="Consensus COG by CONSORF: COG0801"
/codon_start=1
/transl_table=11
/product="7,
8-dihydro-6-hydroxymethylpterin-pyrophosphokinase"
/protein_id="YP_005761940.1"
/db_xref="GI:384887429"
/db_xref="GeneID:12340827"
/translation="MMREILTSRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKNCF
LYFKNHSKIGKIFSSPVYINPPFGYTKQPNFYNATIILKTSLSLRHFFALVFYIERRF
GRKRKRDFKDAPRTLDIDIIAFNQVILRQKDLTLPHLKWSERDSVLVPLALQQILFKK
GEW"
misc_feature 427105..427488
/locus_tag="HPKB_0416"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:29601"
misc_feature order(427120..427122,427222..427227,427231..427233,
427255..427257,427261..427263,427306..427308,
427318..427320,427327..427329,427348..427350,
427354..427356,427366..427368,427375..427377,
427384..427386,427390..427395,427435..427437,
427444..427449,427462..427464,427468..427470)
/locus_tag="HPKB_0416"
/note="catalytic center binding site [active]"
/db_xref="CDD:29601"
misc_feature order(427306..427308,427318..427320,427327..427329,
427348..427350,427354..427356,427375..427377,
427390..427395,427435..427437,427444..427449,
427462..427464)
/locus_tag="HPKB_0416"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29601"
gene 427588..428895
/locus_tag="HPKB_0417"
/db_xref="GeneID:12340828"
CDS 427588..428895
/locus_tag="HPKB_0417"
/note="Consensus COG by CONSORF: COG1419. Candidate starts
by CONSORF:
427588,427663,427723,427738,427753,427759,427786,427912,
428044,428128,428155,428161,428167,428173,428176,428188,
428230,428233,428242,428248"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761941.1"
/db_xref="GI:384887430"
/db_xref="GeneID:12340828"
/translation="MDTLVFKTQEIRKKTLTSSGLYEIVVAVEEESENKPPKAPLIPE
SLYDEELNEEDVVMQLSSTVEEMRKLAGVSSSQRNYSFSKNKTPLEKDAPLEDAPLEA
NKQDALLQALKDEANHKKEREKREVKQEEEIKDINLQLSKIRDSLKLIQNMFWDEKNP
NSVNIPQEFAEIYKLAKQSGMKPSHLDEIMQLSLELMPLRMRENSVTIKRYFREVLRK
MILCRPEDLNLRQKRILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRI
GALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEYCDFILVDTTGHSQYDKEKIAGLK
EFIDGGYNIDVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVH
ESQKPISYLSIGQEVPMDLKVATNEYLVDCMLDGFSNPNKEQA"
misc_feature 427591..428889
/locus_tag="HPKB_0417"
/note="flagellar biosynthesis regulator FlhF; Validated;
Region: flhF; PRK05703"
/db_xref="CDD:180213"
misc_feature 428287..428793
/locus_tag="HPKB_0417"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene 428892..429776
/locus_tag="HPKB_0418"
/db_xref="GeneID:12340829"
CDS 428892..429776
/locus_tag="HPKB_0418"
/note="Consensus COG by CONSORF: COG0455"
/codon_start=1
/transl_table=11
/product="ParaA family ATPase"
/protein_id="YP_005761942.1"
/db_xref="GI:384887431"
/db_xref="GeneID:12340829"
/translation="MNNQASRLDNLINIKNPKSFFDNKGNTKFIAITSGKGGVGKSNI
SANLAYALYKKGYKVGVFDADIGLANLDVIFGVKTHKNILHALKGEAKLQEIICEIEP
GLCLIPGDSGEEILKYISGSEALDQFVDEEGVLSSLDYIVVDTGAGIGATTQAFLNAS
DCVVIVTTPDPSAITDAYACIKINSKNKDELFLIANMVAQPKEGRATYERLFKVAKNN
IASLELHYLGAIENSSLLKRYVRERKILRKIAPNDLFSQSIDQIAGLLVSKLETGALE
MPKEGFKSFFKRLLSYLG"
misc_feature 428967..429761
/locus_tag="HPKB_0418"
/note="Antiactivator of flagellar biosynthesis FleN, an
ATPase [Cell motility]; Region: flhG; COG0455"
/db_xref="CDD:30803"
misc_feature 428976..>429143
/locus_tag="HPKB_0418"
/note="FleN is a member of the Fer4_NifH superfamily. It
shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the number
of flagella and chemotactic motility by...; Region:
FleN-like; cd02038"
/db_xref="CDD:73301"
misc_feature 428994..429017
/locus_tag="HPKB_0418"
/note="P-loop; other site"
/db_xref="CDD:73301"
misc_feature <429303..429584
/locus_tag="HPKB_0418"
/note="FleN is a member of the Fer4_NifH superfamily. It
shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the number
of flagella and chemotactic motility by...; Region:
FleN-like; cd02038"
/db_xref="CDD:73301"
gene 429781..430095
/locus_tag="HPKB_0419"
/db_xref="GeneID:12340830"
CDS 429781..430095
/locus_tag="HPKB_0419"
/note="Consensus COG by CONSORF: COG2978"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761943.1"
/db_xref="GI:384887432"
/db_xref="GeneID:12340830"
/translation="MKVQNFIHFSVVVGFFLGLVFSVLKFNEPESILLWTVLSTLGGY
LIALLFASIFIACTDLDICLFDKKGTEESLLRFNHEFKNREKEVANILEYIRSYDFDD
GK"
gene 430073..430849
/gene="fliA"
/locus_tag="HPKB_0420"
/db_xref="GeneID:12340831"
CDS 430073..430849
/gene="fliA"
/locus_tag="HPKB_0420"
/note="Consensus COG by CONSORF: COG1191"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis sigma factor"
/protein_id="YP_005761944.1"
/db_xref="GI:384887433"
/db_xref="GeneID:12340831"
/translation="MILMMENRMPKEIQKTQTSETSEKNIEKVLNAYDKQQHHHQDAL
AIQYLPAVRAMAFRLKERLPSSIDFNDLVSIGTEELIKLARRYESALNDSFWGYAKTR
VNGAMLDYLRSLDVISRSNRKLIKSIDIEITKHLNEHGKEPSDAYLAQTLGENIEKIK
EAKTASDIYALVPIDEQFNAIEQDEITKKIEAEELLEHVQKALNQMSEREQILIQLYY
FEELNLSEIKEILGITESRISQIIKEVIKKVRKSLGVDHG"
misc_feature 430166..430843
/gene="fliA"
/locus_tag="HPKB_0420"
/note="flagellar biosynthesis sigma factor; Validated;
Region: fliA; PRK06986"
/db_xref="CDD:180784"
misc_feature 430202..430417
/gene="fliA"
/locus_tag="HPKB_0420"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 430658..430822
/gene="fliA"
/locus_tag="HPKB_0420"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(430691..430693,430721..430723,430739..430744,
430772..430774,430778..430783,430787..430795,
430799..430804,430808..430810)
/gene="fliA"
/locus_tag="HPKB_0420"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 430842..431906
/gene="fliM"
/locus_tag="HPKB_0421"
/db_xref="GeneID:12340832"
CDS 430842..431906
/gene="fliM"
/locus_tag="HPKB_0421"
/note="Consensus COG by CONSORF: COG1868"
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein FliM"
/protein_id="YP_005761945.1"
/db_xref="GI:384887434"
/db_xref="GeneID:12340832"
/translation="MADILSQEEIDALLEVVDENVDIQNVQKKDIIPQRSVTLYDFKR
PNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPT
SFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQSREFSDIELNLLDTILRQ
VMQILKEVWSPVVEMFPTIDAKESSANVVQIVAQNEISIMVVLEIIIGHSRGMMNICY
PVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEML
DLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEIL
EMLEEQRRGKVGDIMKIEEE"
misc_feature 430842..431849
/gene="fliM"
/locus_tag="HPKB_0421"
/note="flagellar motor switch protein FliM; Validated;
Region: fliM; PRK06666"
/db_xref="CDD:180651"
misc_feature 431589..431819
/gene="fliM"
/locus_tag="HPKB_0421"
/note="Surface presentation of antigens (SPOA); Region:
SpoA; pfam01052"
/db_xref="CDD:201573"
gene 431910..432782
/locus_tag="HPKB_0422"
/db_xref="GeneID:12340833"
CDS 431910..432782
/locus_tag="HPKB_0422"
/codon_start=1
/transl_table=11
/product="chemotaxis protein"
/protein_id="YP_005761946.1"
/db_xref="GI:384887435"
/db_xref="GeneID:12340833"
/translation="MQDFIKIFIQEVVSTLEGLVGKAPSVGLEKEVSNSEEAWGSLIS
VPYARVVISAIEKEESSVELLAPVVLVTALSDLMLGGEGASKEEMDNDDLDAFKEMAS
NIFGAIATSLKSQELLPKLNFTTINAEIAKELPKKEDYAKMIVFSFKMEALQESQIIL
LTTVAFERQFKKTHQEEKEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVK
VRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQIT
DIGTKKERLEQLKH"
misc_feature 431910..432779
/locus_tag="HPKB_0422"
/note="flagellar motor switch protein FliY; Validated;
Region: PRK08432"
/db_xref="CDD:181422"
misc_feature 432525..432755
/locus_tag="HPKB_0422"
/note="flagellar motor switch protein FliN; Region: fliN;
TIGR02480"
/db_xref="CDD:131533"
gene 432811..433347
/locus_tag="HPKB_0423"
/db_xref="GeneID:12340834"
CDS 432811..433347
/locus_tag="HPKB_0423"
/note="Consensus COG by CONSORF: COG2731"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761947.1"
/db_xref="GI:384887436"
/db_xref="GeneID:12340834"
/translation="MAIFGELSSLGHLFKKTQVLEILHEYLKDVMQKGSKANQRVLNL
ATNTEFQVPLGHGMFSIEQSYCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGI
NQAVIKNPYDEKKDLIVYEPVSEASFLRLHAGMLAIFFKNDAHALRFYGESFEKYREE
PIFKAVVKAPKGLIKLKL"
misc_feature 432844..433332
/locus_tag="HPKB_0423"
/note="Beta-galactosidase, beta subunit [Carbohydrate
transport and metabolism]; Region: EbgC; COG2731"
/db_xref="CDD:32617"
gene 433344..433841
/locus_tag="HPKB_0424"
/db_xref="GeneID:12340835"
CDS 433344..433841
/locus_tag="HPKB_0424"
/note="Consensus COG by CONSORF: COG4731"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761948.1"
/db_xref="GI:384887437"
/db_xref="GeneID:12340835"
/translation="MKLVSLVIVFCCFLGAVELPGIYQTQEFLYMKSSFVEFFEHNGK
FYAYGISDADGSKARKDKFNPNPKLRNRSDKGVVFLSDLVKVGERSYKGGKAYNFYDG
KTYYVRVTQNSNGDLEFTSSYDKWGYVGKTFTWKRLSDEEIKNLKLKRFNLNEVLKTI
KDSPI"
misc_feature 433365..433838
/locus_tag="HPKB_0424"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4731"
/db_xref="CDD:34346"
gene complement(433861..434313)
/locus_tag="HPKB_0425"
/db_xref="GeneID:12340836"
CDS complement(433861..434313)
/locus_tag="HPKB_0425"
/note="Consensus COG by CONSORF: COG0735"
/codon_start=1
/transl_table=11
/product="ferric uptake regulation protein"
/protein_id="YP_005761949.1"
/db_xref="GI:384887438"
/db_xref="GeneID:12340836"
/translation="MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLS
PEEITHSIRQKDKNTSISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIIC
LHCGKIIEFADPEIENRQNEVVKKYQAKLISHDMKMFVWCKECQENAY"
misc_feature complement(433888..434235)
/locus_tag="HPKB_0425"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(433984..433986,434017..434019,
434023..434025,434044..434046,434188..434190))
/locus_tag="HPKB_0425"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(434092..434136)
/locus_tag="HPKB_0425"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(433912..433914,433963..433965,
434020..434022,434026..434028))
/locus_tag="HPKB_0425"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(433891..433917,433921..433929,
433954..433959,434005..434013))
/locus_tag="HPKB_0425"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(433888..433890,433999..434001,
434008..434010))
/locus_tag="HPKB_0425"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene complement(434473..435648)
/locus_tag="HPKB_0426"
/db_xref="GeneID:12340837"
CDS complement(434473..435648)
/locus_tag="HPKB_0426"
/note="Consensus COG by CONSORF: COG2256"
/codon_start=1
/transl_table=11
/product="recombination factor protein RarA"
/protein_id="YP_005761950.1"
/db_xref="GI:384887439"
/db_xref="GeneID:12340837"
/translation="MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFLHAFFYG
PPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRL
NKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCIK
ALTLLKKQIEPNAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDG
SYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNA
NPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDYIQKGS
LYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN"
misc_feature complement(434476..435642)
/locus_tag="HPKB_0426"
/note="recombination factor protein RarA; Reviewed;
Region: PRK13342"
/db_xref="CDD:183986"
misc_feature complement(435229..435600)
/locus_tag="HPKB_0426"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(435496..435519)
/locus_tag="HPKB_0426"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(435271..435273,435358..435360,
435493..435516))
/locus_tag="HPKB_0426"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(435355..435372)
/locus_tag="HPKB_0426"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(435229..435231)
/locus_tag="HPKB_0426"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(434476..434937)
/locus_tag="HPKB_0426"
/note="MgsA AAA+ ATPase C terminal; Region: MgsA_C;
pfam12002"
/db_xref="CDD:192911"
gene complement(435645..436016)
/locus_tag="HPKB_0427"
/db_xref="GeneID:12340838"
CDS complement(435645..436016)
/locus_tag="HPKB_0427"
/note="Consensus COG by CONSORF: COG0789"
/codon_start=1
/transl_table=11
/product="putative heat shock protein (hspR)"
/protein_id="YP_005761951.1"
/db_xref="GI:384887440"
/db_xref="GeneID:12340838"
/translation="MCDYDEPLYLISVVAKILGVHPQTLRQYEKEGLIEPSRTDGKMR
LYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDSLNKELQDALHKHSKNT
KTPTKNLNTPTNFYELILFKK"
misc_feature complement(435723..435995)
/locus_tag="HPKB_0427"
/note="Helix-Turn-Helix DNA binding domain of the HspR
transcription regulator; Region: HTH_HspR; cd04766"
/db_xref="CDD:133394"
misc_feature complement(435783..435992)
/locus_tag="HPKB_0427"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature complement(order(435885..435893,435939..435941,
435981..435989))
/locus_tag="HPKB_0427"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133394"
misc_feature complement(order(435732..435737,435744..435746,
435756..435758,435774..435776,435786..435788,
435795..435797,435822..435827,435840..435842,
435849..435851))
/locus_tag="HPKB_0427"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:133394"
gene complement(436026..436892)
/locus_tag="HPKB_0428"
/db_xref="GeneID:12340839"
CDS complement(436026..436892)
/locus_tag="HPKB_0428"
/codon_start=1
/transl_table=11
/product="co-chaperone-curved DNA binding protein A"
/protein_id="YP_005761952.1"
/db_xref="GI:384887441"
/db_xref="GeneID:12340839"
/translation="MSKSLYQTLNVSENANQDEIKKSYRRLARQYHPDLNKTKEAEEK
FKEINAAYEILSDEEKRRQYDQFGDNMFGGQNFSDFARSRSASEDLDDILSSIFGRGG
FSQRFSQNSQGFSGFNFSNFAHEDLDMTTTLNVSVLDTLLGNKKQVSINNETFSLKIP
IGVEEGEKIRVRNKGKMGRTGRGDLLLQIHIEEDEIYKREKDDIIQIFDLPLKTALFG
GKIEIAAWHKTLTLTIPPNTKAMQKFRIKDKGIKNRKTSHVGDLYLQARLILPKTETL
SNELKALLEKEL"
misc_feature complement(436035..436886)
/locus_tag="HPKB_0428"
/note="chaperone protein DnaJ; Provisional; Region:
PRK14299"
/db_xref="CDD:184613"
misc_feature complement(436722..436877)
/locus_tag="HPKB_0428"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(436743..436748,436755..436760,
436767..436769,436791..436799))
/locus_tag="HPKB_0428"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature complement(436077..436511)
/locus_tag="HPKB_0428"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature complement(order(436365..436367,436437..436439,
436440..436457,436500..436502))
/locus_tag="HPKB_0428"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature complement(order(436077..436085,436173..436184,
436242..436247,436254..436259))
/locus_tag="HPKB_0428"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 437060..438310
/locus_tag="HPKB_0429"
/db_xref="GeneID:12340840"
CDS 437060..438310
/locus_tag="HPKB_0429"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761953.1"
/db_xref="GI:384887442"
/db_xref="GeneID:12340840"
/translation="MQYKKNKKRYYYLALWILFLNGLSLKALEIAVKPFGYLGLLYNQ
GTQKNPHSYVGALARLGVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGNP
NNVKPYLSAGDVSDAYIQYTNQRFQIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMR
YFGIFMDSMLYNGHQINKEQGNRIATSLNALASYDPVSKRLYVGGEVFVLGTEYRHEN
LKVLPFILTDTRLPLLTQNVLVQVGGKLEYDASLAKGFTSHTLVHGMYQYGNTDIATN
AKNAGLFLIDQTFKYKIFNFGTGFYIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAI
YFANSSISGYVFLGLKTKRVRLDAMVAFGDYQEYSLMSSFRVWTYRGLSFDMGGGYVY
AYNSKATRKSLGNSSFVFFGKFLF"
gene complement(438400..439176)
/locus_tag="HPKB_0430"
/db_xref="GeneID:12340841"
CDS complement(438400..439176)
/locus_tag="HPKB_0430"
/note="Consensus COG by CONSORF: COG0258"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761954.1"
/db_xref="GI:384887443"
/db_xref="GeneID:12340841"
/translation="MLSNKTLPKRFAACSLQEVGIIFLTTQILSIMRKTRCSKTLFFI
TRGRESFRYQLCDHYKQKRHQFDEDFRSLLKALKIALVEKYPLKKGARIQGEHCFEYE
ADDIISFYKKKDPKNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCV
VGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLN
MRLVNMHQMTHHGVIKLWEPEFKKTFFPKKPQRPDFKRIS"
misc_feature complement(438469..439164)
/locus_tag="HPKB_0430"
/note="5'-3' exonuclease; Provisional; Region: PRK14976"
/db_xref="CDD:184939"
misc_feature complement(<438793..439110)
/locus_tag="HPKB_0430"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:209904"
misc_feature complement(order(438805..438807,438865..438867))
/locus_tag="HPKB_0430"
/note="putative active site [active]"
/db_xref="CDD:189022"
misc_feature complement(438622..438726)
/locus_tag="HPKB_0430"
/note="Helix-hairpin-helix class 2 (Pol1 family) motifs;
Region: HhH2; smart00279"
/db_xref="CDD:197623"
misc_feature complement(order(438637..438639,438652..438660,
438688..438696))
/locus_tag="HPKB_0430"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:188616"
misc_feature complement(438688..438690)
/locus_tag="HPKB_0430"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:188616"
gene complement(439492..440388)
/locus_tag="HPKB_0431"
/db_xref="GeneID:12340842"
CDS complement(439492..440388)
/locus_tag="HPKB_0431"
/note="Candidate starts by CONSORF: 440391,440388"
/codon_start=1
/transl_table=11
/product="response regulator"
/protein_id="YP_005761955.1"
/db_xref="GI:384887444"
/db_xref="GeneID:12340842"
/translation="MKILIIEDDLALARSISHNLHDLGHFCEIISSISEENKEPYDVI
LVSSKVCTQGRCEHFVRYNSKQIIIMMASHVNEDGVNKPIQAGARDYILKPFKMDELL
RKIQYHKAYQEMTARLGFYENYLDFIHAELPLPKDFSYRPPFIIHTPSQELANAYLLQ
YAKERQMDFSFFSLKDTTWKELYKIKDKLERPFYIMHLEELKKDEQLKLLELARSCPI
VLSYTHKEPLEFPKIVSIECGNKPLSLFSNHTTFLSIQEYEREAIRHFSSTCTDTELA
NKLGISRKSLWEKRRKYNLPRK"
misc_feature complement(440050..440388)
/locus_tag="HPKB_0431"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:31127"
misc_feature complement(440071..440379)
/locus_tag="HPKB_0431"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(440104..440109,440116..440118,
440173..440175,440248..440250,440365..440370))
/locus_tag="HPKB_0431"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(440248..440250)
/locus_tag="HPKB_0431"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(440224..440226,440230..440235))
/locus_tag="HPKB_0431"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(440101..440109)
/locus_tag="HPKB_0431"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(440405..441625)
/locus_tag="HPKB_0432"
/db_xref="GeneID:12340843"
CDS complement(440405..441625)
/locus_tag="HPKB_0432"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase"
/protein_id="YP_005761956.1"
/db_xref="GI:384887445"
/db_xref="GeneID:12340843"
/translation="MSLIRVNGEAFKLSLESLEEDPFETKETLETLVKQTSVVLLAAG
ESKRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEILLVVNELDYIYIKRHYPEIK
LVKGGASRQESVRNALKIIDSAYTLTSDVARGLANIEALKSLFLTLQQTSHYCIAPYL
PCYDTAIYYNEALDREAIKLIQTPQLSHTKALQSALNQGDFKDESSAILQAFPNRVSY
IEGSKDLHKLTTSGDLKHFALFFNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFG
LKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPQYKNASSKELLKIVLDFSQSIG
FELLEIGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL
LVQAHVSMRYKQKL"
misc_feature complement(440408..441535)
/locus_tag="HPKB_0432"
/note="bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional;
Region: ispDF; PRK09382"
/db_xref="CDD:181813"
misc_feature complement(440915..441520)
/locus_tag="HPKB_0432"
/note="CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production; Region:
CDP-ME_synthetase; cd02516"
/db_xref="CDD:133009"
misc_feature complement(order(440945..440947,441230..441238,
441287..441289,441296..441307,441461..441463,
441482..441499,441503..441505))
/locus_tag="HPKB_0432"
/note="substrate binding site; other site"
/db_xref="CDD:133009"
misc_feature complement(order(440957..440962,440972..440983,
440999..441001,441008..441013,441017..441022,
441083..441100,441134..441136,441140..441142,
441164..441166,441227..441229))
/locus_tag="HPKB_0432"
/note="dimer interface; other site"
/db_xref="CDD:133009"
misc_feature complement(440426..440884)
/locus_tag="HPKB_0432"
/note="MECDP_synthase
(2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
encoded by the ispF gene, catalyzes the formation of
2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
biosynthesis; Region: MECDP_synthase; cd00554"
/db_xref="CDD:100025"
misc_feature complement(order(440429..440431,440435..440437,
440441..440443,440480..440488,440495..440500,
440504..440506,440570..440572,440576..440578,
440597..440599,440603..440605,440609..440611,
440720..440725,440729..440734,440738..440740,
440843..440845,440855..440863,440867..440869,
440873..440875,440879..440884))
/locus_tag="HPKB_0432"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100025"
misc_feature complement(order(440762..440764,440858..440860,
440864..440866))
/locus_tag="HPKB_0432"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:100025"
misc_feature complement(order(440489..440497,440570..440581,
440585..440590,440714..440716,440720..440722))
/locus_tag="HPKB_0432"
/note="CDP-binding sites; other site"
/db_xref="CDD:100025"
gene complement(441647..443074)
/locus_tag="HPKB_0433"
/db_xref="GeneID:12340844"
CDS complement(441647..443074)
/locus_tag="HPKB_0433"
/note="Consensus COG by CONSORF: COG0265. Candidate starts
by CONSORF: 443077,443074"
/codon_start=1
/transl_table=11
/product="peptidase S1 and S6, chymotrypsin/Hap"
/protein_id="YP_005761957.1"
/db_xref="GI:384887446"
/db_xref="GeneID:12340844"
/translation="MKKTFFISLALALSLNAGNIQIQNMPKVKERVSVPSKDDTIYSY
HDSIKDSIKAVVNISTEKKIKNNFIGGGVFNDPFFQQFFGDLGGMIPKERMERALGSG
VIISKDGYIVTNNHVIDGADKIKVTIPGSNKEYSATLVGTDSESDLAVIRITKDNLPT
IKFSDSNDILVGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSYENFIQTDASINP
GNSGGALIDSRGGLVGINTAIISKTGGNHGIGFAIPSNMVKDIVTQLIKTGKIERGYL
GVGLQDLSGDLQNSYDNKEGAVVISVEKDSPAKKAGILVWDLITEVNGKKVKNTNELR
NLIGSMLPNQRVTLKVIRDKKERTFTLTLAERKNPNKKETISAQNGAQGQLNGLQVED
LTQKTKRSMRLSDDVQGVLVSQVNENSPAEQAGFRQGNIITKIEEVEVKSVADFNHAL
EKYKGKPKRFLVLDLNQGYRIILVK"
misc_feature complement(441653..442948)
/locus_tag="HPKB_0433"
/note="periplasmic serine protease, Do/DeqQ family;
Region: degP_htrA_DO; TIGR02037"
/db_xref="CDD:162670"
misc_feature complement(442370..442777)
/locus_tag="HPKB_0433"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature complement(441992..442255)
/locus_tag="HPKB_0433"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature complement(order(442073..442078,442085..442090,
442235..442237,442241..442252))
/locus_tag="HPKB_0433"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
misc_feature complement(441686..441907)
/locus_tag="HPKB_0433"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature complement(order(441734..441739,441746..441751,
441905..441907))
/locus_tag="HPKB_0433"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
gene complement(443122..444531)
/locus_tag="HPKB_0434"
/db_xref="GeneID:12340845"
CDS complement(443122..444531)
/locus_tag="HPKB_0434"
/note="Consensus COG by CONSORF: COG0833. Candidate starts
by CONSORF: 444564,444531"
/codon_start=1
/transl_table=11
/product="amino acid permease"
/protein_id="YP_005761958.1"
/db_xref="GI:384887447"
/db_xref="GeneID:12340845"
/translation="MQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIASAGPLG
TLIAYCFGGLVVYCIMLSLGELASVYPTTGSFGDYAAKFIGPGTGYMVFWMYWLGWVI
TVALEYIAIGMLMQRWFAGIPIHYWVILCIALVFLLNFFSVKIFAEGEFFFSLIKVLA
VIAFIGIGAIGIIYQIYLHGFSSIFDNFYFGDKGFFPNGSAAVFSTMLAVIFAFTGTE
VIGVAVGETKNASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMSDSSITQSPFVSVL
ERINLPFIGMGIPYVADIMNAVIITAMFSTANSGLYGASRMIYGLSKQKMFFKVFSKL
NRQGTPTYAMFFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSVSQYSFR
KQYLKAGHSLADLPYKAPFLPFLQLIGITGCVIGVIGSAMDKDQRIGMILTIVFAIVC
YIGYYFTQKANENNKKDLI"
misc_feature complement(443131..444531)
/locus_tag="HPKB_0434"
/note="S-methylmethionine transporter; Provisional;
Region: PRK11387"
/db_xref="CDD:183113"
gene complement(444755..445294)
/locus_tag="HPKB_0435"
/db_xref="GeneID:12340846"
CDS complement(444755..445294)
/locus_tag="HPKB_0435"
/note="Consensus COG by CONSORF: COG0558. Candidate starts
by CONSORF: 445357,445294"
/codon_start=1
/transl_table=11
/product="phosphatidylglycerophosphate synthase"
/protein_id="YP_005761959.1"
/db_xref="GI:384887448"
/db_xref="GeneID:12340846"
/translation="MKVLKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPFHINMI
SSLVFLFAALTDLLDGYIARSYKARSRFGEIFDPLADKILILSAFLGLVHLDRVNAWI
PFVILGREFFISGLRVLAANEKKDIPVNALGKYKTVSQVVAISALLADVTYSYALVAI
AVFLTLYSGIDYTIKYYKS"
misc_feature complement(444758..445201)
/locus_tag="HPKB_0435"
/note="CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase; Region: pgsA; TIGR00560"
/db_xref="CDD:161929"
gene complement(445291..445899)
/locus_tag="HPKB_0436"
/db_xref="GeneID:12340847"
CDS complement(445291..445899)
/locus_tag="HPKB_0436"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761960.1"
/db_xref="GI:384887449"
/db_xref="GeneID:12340847"
/translation="MQNIIHIHQNKELQFIKKCLLCYFFAPLCGAILLVLFLVSSGAK
SFQVSNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENFAFSFLAVI
LCALLSYLIPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLLFSFMLA
LLGILVQALVIIFLTIAVILMCVALGFLGRAFLNFSQVFLKA"
gene complement(445909..446697)
/locus_tag="HPKB_0437"
/db_xref="GeneID:12340848"
CDS complement(445909..446697)
/locus_tag="HPKB_0437"
/note="Consensus COG by CONSORF: COG1028"
/codon_start=1
/transl_table=11
/product="7-alpha-hydroxysteroid dehydrogenase"
/protein_id="YP_005761961.1"
/db_xref="GI:384887450"
/db_xref="GeneID:12340848"
/translation="MNNSNHMKNKTLVISGATRGIGKAILYRFAQSGVNIAFTYNKNV
EEANKIIEDVEQKYSIKAKAYPLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRS
VVGGFAPFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYM
PNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVE
EQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGGTTFK"
misc_feature complement(445912..446694)
/locus_tag="HPKB_0437"
/note="7-alpha-hydroxysteroid dehydrogenase; Provisional;
Region: PRK08416"
/db_xref="CDD:181417"
misc_feature complement(445924..446658)
/locus_tag="HPKB_0437"
/note="1-cyclohexenylcarbonyl_coenzyme A_reductase
(ChcA)_like, classical (c) SDRs; Region: ChcA_like_SDR_c;
cd05359"
/db_xref="CDD:187617"
misc_feature complement(order(446092..446097,446101..446112,
446188..446190,446200..446202,446239..446247,
446326..446328,446407..446415,446491..446499,
446572..446580,446635..446646,446650..446652))
/locus_tag="HPKB_0437"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187617"
misc_feature complement(order(446188..446190,446200..446202,
446239..446241,446323..446325))
/locus_tag="HPKB_0437"
/note="active site"
/db_xref="CDD:187617"
gene complement(446694..447596)
/gene="dapA"
/locus_tag="HPKB_0438"
/db_xref="GeneID:12340849"
CDS complement(446694..447596)
/gene="dapA"
/locus_tag="HPKB_0438"
/note="Consensus COG by CONSORF: COG0329"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate synthase"
/protein_id="YP_005761962.1"
/db_xref="GI:384887451"
/db_xref="GeneID:12340849"
/translation="MQFHSSSALITPFKKDLSVDEAAYEVLIKRQIFQGMDACVPVGT
TGESATLTHKEHMHCIEIAVETCKNTKTPSNSRMKVLAGVGSNATSESLSLAKFAQKI
GADAILCVSPYYNRPTQQGLFEHYKTIAQSVEIPVMLYDVPSRTGVSIEVPTALKLFR
EVPNIKAIKEASGSLKRVTELHYYEKDFKIFSGEDSLNHSIMFSGGWGVISVTGNLMP
NLISQMVNCTLKLEYQQALEIQNKLFHLHQALFVETNPIPIKMAMHLAGLIENPSYRL
PLVAPSKETIQLLEKTLQQYEVIA"
misc_feature complement(446709..447587)
/gene="dapA"
/locus_tag="HPKB_0438"
/note="dihydrodipicolinate synthase; Region: dapA;
TIGR00674"
/db_xref="CDD:129757"
misc_feature complement(446718..447575)
/gene="dapA"
/locus_tag="HPKB_0438"
/note="Dihydrodipicolinate synthase (DHDPS); Region:
DHDPS; cd00950"
/db_xref="CDD:188637"
misc_feature complement(order(446766..446768,446772..446774,
446829..446834,447162..447164,447168..447170,
447255..447263,447330..447332,447336..447338,
447456..447470))
/gene="dapA"
/locus_tag="HPKB_0438"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188637"
misc_feature complement(order(447012..447014,447018..447020,
447090..447092,447162..447164,447177..447179,
447462..447467))
/gene="dapA"
/locus_tag="HPKB_0438"
/note="active site"
/db_xref="CDD:188637"
misc_feature complement(447090..447092)
/gene="dapA"
/locus_tag="HPKB_0438"
/note="catalytic residue [active]"
/db_xref="CDD:188637"
gene complement(447611..448945)
/locus_tag="HPKB_0439"
/db_xref="GeneID:12340850"
CDS complement(447611..448945)
/locus_tag="HPKB_0439"
/note="Consensus COG by CONSORF: COG0612"
/codon_start=1
/transl_table=11
/product="putative zinc protease"
/protein_id="YP_005761963.1"
/db_xref="GI:384887452"
/db_xref="GeneID:12340850"
/translation="MRYFSVKRLLRLSSVLLVTLGASMHAQSYLPKHESITLKNGLQV
VSVPLENKTGVIEVDVLYKVGSRNEVMGKSGIAHMLEHLNFKSTKNLKAGEFDKIVKR
FGGVSNASTSFDITRYFIKTSQANLDKSLELFAETMGSLNLKEDEFLPERQVVAEERR
WRTDNSPIGMLYFRFFNTAYVYHPYHWTPIGFMDDIQNWTLKDIKKFHSLYYQPKNAI
VLVVGDVNSQKVFELSKKHFESLKNLDGKAIPTPYMKEPKQDGARTAVVHKDGVHLEW
VALGYKVPAFKHKDQVALDALSKLLGEGKSSWLQSELVDKKRLASQAFSHNMQLQDES
VFLFIAGGNPNIKAEALQKEIVALLEKLKKGEITQAELDKLKINQKADFISNLESSSD
VAGLFADYLVQNDIQGLTDYQQQFLDLKVSDLVRVANEYFKDTQSTTVFLKP"
misc_feature complement(447614..448891)
/locus_tag="HPKB_0439"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature complement(<448469..448768)
/locus_tag="HPKB_0439"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature complement(447818..448354)
/locus_tag="HPKB_0439"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene complement(448942..449997)
/locus_tag="HPKB_0440"
/db_xref="GeneID:12340851"
CDS complement(448942..449997)
/locus_tag="HPKB_0440"
/note="Consensus COG by CONSORF: COG0167"
/codon_start=1
/transl_table=11
/product="dihydroorotate dehydrogenase 2"
/protein_id="YP_005761964.1"
/db_xref="GI:384887453"
/db_xref="GeneID:12340851"
/translation="MLYSLLKKYLFSLDAEDAHEKVCKILEMLSSSPFLCRLIDSQWG
YKNPKLENEILGLHFPNPLGLAAGFDKNISMLRALIAFGFGYLEAGTLTNAAQSGNER
PRLFRHIEEESLQNAMGFNNHGAILATRSFNRFAPYKTPIGINLGKNKHIEQAHALED
YKAVLNKCLNIGDYYTFNLSSPNTPNLRDLQNKAFVNELFCMAKEMTHKPLFLKIAPD
LETDAMLEVVNSAIEAGAHGIIATNTTIDKSLVFAPKEMGGLSGKCLTKKSREIFKEL
AKAFFNQSVLVSVGGISDAKDAYERIKMGASLLQIYSAFIYNGPNLCQNILKDLVKLL
QKDGFLSVKEAIGADLR"
misc_feature complement(449005..449958)
/locus_tag="HPKB_0440"
/note="dihydroorotate dehydrogenase, subfamily 2; Region:
pyrD_sub2; TIGR01036"
/db_xref="CDD:200068"
misc_feature complement(449008..449958)
/locus_tag="HPKB_0440"
/note="Dihydroorotate dehydrogenase (DHOD) class 2. DHOD
catalyzes the oxidation of (S)-dihydroorotate to orotate.
This is the fourth step and the only redox reaction in the
de novo biosynthesis of UMP, the precursor of all
pyrimidine nucleotides. DHOD requires...; Region:
DHOD_2_like; cd04738"
/db_xref="CDD:73400"
misc_feature complement(order(449677..449679,449941..449943))
/locus_tag="HPKB_0440"
/note="quinone interaction residues [chemical binding];
other site"
/db_xref="CDD:73400"
misc_feature complement(order(449059..449064,449125..449127,
449212..449214,449266..449274,449356..449358,
449449..449451,449455..449457,449464..449466,
449638..449646,449650..449652,449725..449727,
449785..449787,449797..449799))
/locus_tag="HPKB_0440"
/note="active site"
/db_xref="CDD:73400"
misc_feature complement(order(449356..449358,449455..449457,
449785..449787))
/locus_tag="HPKB_0440"
/note="catalytic residues [active]"
/db_xref="CDD:73400"
misc_feature complement(order(449059..449064,449125..449127,
449212..449214,449269..449274,449356..449358,
449464..449466,449650..449652,449725..449727))
/locus_tag="HPKB_0440"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73400"
misc_feature complement(order(449266..449271,449458..449460,
449464..449466,449650..449652))
/locus_tag="HPKB_0440"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73400"
gene complement(450034..452061)
/gene="ppk"
/locus_tag="HPKB_0441"
/db_xref="GeneID:12340852"
CDS complement(450034..452061)
/gene="ppk"
/locus_tag="HPKB_0441"
/note="Consensus COG by CONSORF: COG0855"
/codon_start=1
/transl_table=11
/product="polyphosphate kinase"
/protein_id="YP_005761965.1"
/db_xref="GI:384887454"
/db_xref="GeneID:12340852"
/translation="MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLD
EFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIKHYLAHEIEERELEFQKIQALLF
KKGLCITPYNELNLEQKAKTKTYFKEQLYALVLPFKLDSSHTFPPLANLTFALFARIK
DKETQTISYALIKLPSFIFRFVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVT
CDADIAITEDEAHDYADLMSKSLRKRNQGEIVRLQTQKGSQELLKTLLASLRSFQTHS
YKKHKITGMHAYKSMIMLNLGDLWELVNHSDFKALKSPSFMPKIHPHFNENDLFKSIE
KQDLLLFHPYESFEPVVDLIEQAASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQV
SVLVELKARFDEESNLHWAKALERAGALVVHGVFKLKVHAKMLVITKKTDNQLRHFTH
LSTGNYNPLSAKIYTDVSFFSAKNEIANDIIKLFHSLLTSSATNSALETLFMAPKQIK
PKIIELIQNEMNHQQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRGICCLKPQ
VKGLSENIRVYSIVGKYLEHARIYYFKHENIYFSSADLMPRNLERRVELLIPATNPKI
ANKLLHILEIQLKDTLKRYELNSKGRYAKVSNPNDPLNSQDYFEKQALKTF"
misc_feature complement(450043..452058)
/gene="ppk"
/locus_tag="HPKB_0441"
/note="polyphosphate kinase; Provisional; Region:
PRK05443"
/db_xref="CDD:180085"
misc_feature complement(451738..452055)
/gene="ppk"
/locus_tag="HPKB_0441"
/note="Polyphosphate kinase N-terminal domain; Region:
PP_kinase_N; pfam13089"
/db_xref="CDD:205270"
misc_feature complement(451090..451713)
/gene="ppk"
/locus_tag="HPKB_0441"
/note="Polyphosphate kinase middle domain; Region:
PP_kinase; pfam02503"
/db_xref="CDD:202263"
misc_feature complement(450607..451080)
/gene="ppk"
/locus_tag="HPKB_0441"
/note="Catalytic C-terminal domain, first repeat, of
Pseudomonas aeruginosa polyphosphate kinase 1 and similar
proteins; Region: PLDc_PaPPK1_C1_like; cd09165"
/db_xref="CDD:197262"
misc_feature complement(order(450607..450609,450613..450618,
450622..450627,450634..450639,450643..450645,
450655..450657,450661..450681,450703..450711,
450760..450762,450766..450783,451006..451008,
451015..451017,451021..451035,451039..451050,
451066..451071,451078..451080))
/gene="ppk"
/locus_tag="HPKB_0441"
/note="putative domain interface [polypeptide binding];
other site"
/db_xref="CDD:197262"
misc_feature complement(order(450664..450666,450670..450672,
450697..450699,450703..450705,450763..450765,
450769..450771,450859..450861,450946..450951))
/gene="ppk"
/locus_tag="HPKB_0441"
/note="putative active site [active]"
/db_xref="CDD:197262"
misc_feature complement(450769..450771)
/gene="ppk"
/locus_tag="HPKB_0441"
/note="catalytic site [active]"
/db_xref="CDD:197262"
misc_feature complement(450103..450558)
/gene="ppk"
/locus_tag="HPKB_0441"
/note="Catalytic C-terminal domain, second repeat, of
Pseudomonas aeruginosa polyphosphate kinase 1 and similar
proteins; Region: PLDc_PaPPK1_C2_like; cd09168"
/db_xref="CDD:197265"
misc_feature complement(order(450220..450222,450226..450228,
450253..450255,450259..450261,450298..450300,
450304..450306,450310..450312,450388..450390))
/gene="ppk"
/locus_tag="HPKB_0441"
/note="putative active site [active]"
/db_xref="CDD:197265"
misc_feature complement(order(450169..450171,450178..450183,
450190..450195,450202..450204,450211..450213,
450217..450231,450259..450267,450295..450315))
/gene="ppk"
/locus_tag="HPKB_0441"
/note="putative domain interface [polypeptide binding];
other site"
/db_xref="CDD:197265"
misc_feature complement(450304..450306)
/gene="ppk"
/locus_tag="HPKB_0441"
/note="catalytic site [active]"
/db_xref="CDD:197265"
gene complement(452155..452232)
/gene="trnP"
/locus_tag="HPKB_0442"
/db_xref="GeneID:12340853"
tRNA complement(452155..452232)
/gene="trnP"
/locus_tag="HPKB_0442"
/product="tRNA-Pro"
/db_xref="GeneID:12340853"
gene complement(452493..453665)
/gene="hsdS_1a"
/locus_tag="HPKB_0443"
/db_xref="GeneID:12340854"
CDS complement(452493..453665)
/gene="hsdS_1a"
/locus_tag="HPKB_0443"
/note="Consensus COG by CONSORF: COG0732"
/codon_start=1
/transl_table=11
/product="type I restriction enzyme specificity subunit"
/protein_id="YP_005761966.1"
/db_xref="GI:384887455"
/db_xref="GeneID:12340854"
/translation="MSKTLQDYATLINDTIQSNEINHYITTDNMCQNLGGIDTLKNIN
IPQEKVRSFQKDDVLLSNIRLYFRKVYRAKQKGGCSSDVLVFRAKHIDSATLFAILSS
QIFTDYACSGSQGSKMPRGNKTHMMDFKIPTINFTIAKIFNSIQNKIENNHKINELLH
KILELLYEQYFVRFDFLDENNKPYQTSGGKMKFSKELNRLIPNDFEVKTLGELITWIS
GSQPPKSCHIYEHKEGYIRFIQNRDYSSNDYITYIPISKNNKICYQYDIMIDKYGEAG
AVRFGLQGAYNVALSKISVINQSMQEYIRSYLNSKPIKKYLSNACMASTRSSLNENHI
YSLMLPIPPINLLQKYEKIAKNIITAIINNNQSTQTLTALRDFLLPLLLKQQVKPK"
misc_feature complement(452616..453500)
/gene="hsdS_1a"
/locus_tag="HPKB_0443"
/note="Restriction endonuclease S subunits [Defense
mechanisms]; Region: HsdS; COG0732"
/db_xref="CDD:31076"
misc_feature complement(452619..453062)
/gene="hsdS_1a"
/locus_tag="HPKB_0443"
/note="Type I restriction modification DNA specificity
domain; Region: Methylase_S; pfam01420"
/db_xref="CDD:201785"
gene complement(453661..455290)
/locus_tag="HPKB_0444"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340855"
gene complement(455280..458411)
/locus_tag="HPKB_0446"
/db_xref="GeneID:12340856"
CDS complement(455280..458411)
/locus_tag="HPKB_0446"
/note="Consensus COG by CONSORF: COG0610. Candidate starts
by CONSORF: 458417,458411"
/codon_start=1
/transl_table=11
/product="type I restriction enzyme R protein (hsdR)"
/protein_id="YP_005761967.1"
/db_xref="GI:384887456"
/db_xref="GeneID:12340856"
/translation="MPHNEITRVQVPALMHLAKLGYDFIPTNSKPNLDTTTNILIDSF
TQAFERLNPTKNAQDSLTEMKKRLNYNDLGKSFYEYLLKSERQIIDFDNPNSNLYEMM
AELPYKSFRPDATLFINGLPLVNIEVKQPLAGQGIKEERDRHIKRYKNPENKVFYNLA
QIWLFSDNLPYDENNPDQGAFYSASYSPIFQRFVEADKLDITPPPRKNDQNHQNHQNY
KSLEEIQKSVLNEFNLKDTDCPKSPKDTPTNSLLTSFCSPKRLCFILKYGISFLKEKS
EFKKHIWRYAQMFASLNVLKELQKHYENNPKDPLKGIIWHTQGSGKTALTYHLTKLIK
DFFSPLGKKTKFYFIVDRLDLLEQAKNEFLKRGLQAHEAENKEDLSQKLKSSSVFENP
QGNDEIIVVNIQKFQAPNEDSFNSAPKEIISKTDLQESIQNSHDLQRVFIIDEAHRSY
DPKGCFYANLIECDKTAIKIALTGTPLLEDNAQDKATKKTFGNYLHTYSYTESIKDAH
TLTLQLEIIEKSYKEKLQEIYRLLQESITIKDIEVKKETIFNDEKYIKAMLSYIIRDL
LKFRQLNDNNEQLKAMVVCFSSNQARLANYLFNEVQEEVLQKNPNLRILNKLKSSLIL
HDEQEVKEKIYSFKHEDTDIAFVFNMLLTGFDLPNLKRLYIHRELKDHNLLQALARVN
RPYNNMSFGYLIDFVGIQENFDKTTDDYLKELNRFNQNGANSDSNIKDIFADRENLEK
DIKNAYNDLFDYPIDDIEDMTSAIVKMSEINELQKVSHAIKTLKERYNLIRTSNDEKI
LSLKEKIDIEKINKISSTLNQKAKQLYALKNINEPKNPNDLIILEDLIALLDFKIAYK
ESKELHFKESEEISAKQKQAKEILEKIKDQKDKEIQKIYKDFSKLLQTPATSQNFDGI
SHSYSAIVSQLKQYDQQTTHLLNKYGDNALAYAITHKRLHKRLMEENISDPVGIFTLL
SALKKSIDERISKRQEILNEEYHLKNAIKLELRNAFKENPSLKDLEKEKEFIVQTLFN
ELQNHHQGNSHAQ"
misc_feature complement(455316..458405)
/locus_tag="HPKB_0446"
/note="Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms]; Region: COG0610"
/db_xref="CDD:30955"
misc_feature complement(457905..458261)
/locus_tag="HPKB_0446"
/note="Type I restriction enzyme R protein N terminus
(HSDR_N); Region: HSDR_N; pfam04313"
/db_xref="CDD:202969"
misc_feature complement(<457332..457574)
/locus_tag="HPKB_0446"
/note="Type III restriction enzyme, res subunit; Region:
ResIII; pfam04851"
/db_xref="CDD:203105"
misc_feature complement(457443..457457)
/locus_tag="HPKB_0446"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(456984..>457097)
/locus_tag="HPKB_0446"
/note="Type III restriction enzyme, res subunit; Region:
ResIII; pfam04851"
/db_xref="CDD:203105"
misc_feature complement(457071..457082)
/locus_tag="HPKB_0446"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
gene complement(458459..460354)
/locus_tag="HPKB_0447"
/db_xref="GeneID:12340857"
CDS complement(458459..460354)
/locus_tag="HPKB_0447"
/note="Consensus COG by CONSORF: COG2604"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761968.1"
/db_xref="GI:384887457"
/db_xref="GeneID:12340857"
/translation="MPFLKALESFDVPFLEKEFLKRFRDNLVFFKSYNPHLFNALNTP
FKNYQLLFEKNHFNLLHTPTNALSYPKNQMVGIAFNMASNPLNNPRWSLDNNHLSLNY
LKTQNNPKLPLTLEATHAISNFLDGYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY
RFHSLYLFEENLDLFKISCYFVRYEDLITKGAKLFIEGFFNPNELKMDFLKRPITHSF
LKLEIMPYKSAFNSRMKENIQSYYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKP
KKINAPICVVGNGPSLDLLLDFLKENEDHFIIFSCGTALKPLKTHGIKVDFQIEVERI
DYLKEVLEKAPLEDTPLIGANMLNPNAFNVAKEAFMFMRGGSACAYINPLNIEYAAPF
VGNAGVALASLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDPSSLISVESNFKG
YETFSDSLFLLSKERIEEALNYYQPKKVYNLSYGAKIKHAVSLNYSQVKLKPSNKQEA
ITRIKSMFSPKSNHAKDLKNLQKNLISFKEDFFMRLNTPCKTKQEIFEWVDNLNGFCQ
TTSAKTPTIGILFEGSIAHILQSVLIVSLHLNENDLTRFTSHSQNTLKQFLKKACLLL
QMRLKQP"
misc_feature complement(458462..460318)
/locus_tag="HPKB_0447"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2604"
/db_xref="CDD:32596"
gene complement(460380..461147)
/locus_tag="HPKB_0448"
/db_xref="GeneID:12340858"
CDS complement(460380..461147)
/locus_tag="HPKB_0448"
/note="Consensus COG by CONSORF: COG1076"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761969.1"
/db_xref="GI:384887458"
/db_xref="GeneID:12340858"
/translation="MEIILLIVAAVVLFYFYNTLKEYLKNPLNPKTKTEEYDLKNDPY
LLVQSSPLDKFKQTQIGAYMRLLKFLDIQKNALDNALRTLFINELEQPLNSEQQTLAK
ELLNEPVDKKENFESLCQEIADHTHGEYTKRLKLVEFLMLLAYADGILDSKEKELFLD
VGAFLQIDNQDFNELYDNFERFNSIEIPMSLEEAKNLFEIQTHITKQDLEEKALDLSA
LYYHKMNDNKRYSEQDFISLKKIALASQLLENGLKNP"
misc_feature complement(460650..>460880)
/locus_tag="HPKB_0448"
/note="N-terminal tellurium resistance protein terB-like
domain of heat shock DnaJ-like proteins; Region:
terB_like_DjlA; cd07316"
/db_xref="CDD:143585"
misc_feature complement(order(460686..460688,460707..460709))
/locus_tag="HPKB_0448"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:143585"
gene complement(461157..461471)
/locus_tag="HPKB_0449"
/db_xref="GeneID:12340859"
CDS complement(461157..461471)
/locus_tag="HPKB_0449"
/note="Candidate starts by CONSORF: 461507,461504,461471"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761970.1"
/db_xref="GI:384887459"
/db_xref="GeneID:12340859"
/translation="MNAFLKLALASLMGGLWYAFNGEGSEIVAIGIFLLILFVFFIRP
VSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK
YS"
gene complement(461473..462960)
/locus_tag="HPKB_0450"
/db_xref="GeneID:12340860"
CDS complement(461473..462960)
/locus_tag="HPKB_0450"
/note="Candidate starts by CONSORF: 462963,462960"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761971.1"
/db_xref="GI:384887460"
/db_xref="GeneID:12340860"
/translation="MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLK
GVSYNENIALKINQIAVFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLVIDEKAVLKN
YEDFFKQVPYITKGEKEELEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNR
LLEMISQPESGVMNFLSVAHYLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSL
FQYNSNPPKTPNPPKTCALFNAYAKHLNAQSLLKSAKLYLEKMGQKVIDLPFCYDGGY
YGKIISTHDFLTACAYNLALAKANGVSLIFCEEDAYLNILHAKEVLDNNPEIIDSINE
KLKKYQLVYEKGVEIVYLNEWVNEFLAWELKSPFDAFLGAEFSRIKQSDHFFNKIRLK
APHFLESFQNYAPLLEVNEASGLLQCAHLRYLGIDLGADFLIVHSLGLFYAFENLSLK
ASKIYKRDNDNTPTLFLPQIALMAMGEKNTQALGLDAHYHKFTFI"
misc_feature complement(461497..462255)
/locus_tag="HPKB_0450"
/note="Heterodisulfide reductase, subunit B [Energy
production and conversion]; Region: HdrB; COG2048"
/db_xref="CDD:32231"
gene complement(462972..463472)
/locus_tag="HPKB_0451"
/db_xref="GeneID:12340861"
CDS complement(462972..463472)
/locus_tag="HPKB_0451"
/note="Consensus COG by CONSORF: COG0436"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761972.1"
/db_xref="GI:384887461"
/db_xref="GeneID:12340861"
/translation="MQRELRLLNNKHCMEYLQFLSKNHLSFNLLCERDAIDFSPKLPK
EIHEKFGALVLFVLAGYTLESLMIDTQSVQFEAGFGPNNIGSVVQVELPGIIQILIKE
KNENAVLFNRCDSLELFQKEEPITQEPKKDEREFKEEFKEWLDSKEALFSNSKNRAIL
ENLHKS"
gene complement(463457..465193)
/locus_tag="HPKB_0452"
/db_xref="GeneID:12340862"
CDS complement(463457..465193)
/locus_tag="HPKB_0452"
/note="Consensus COG by CONSORF: COG1164"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761973.1"
/db_xref="GI:384887462"
/db_xref="GeneID:12340862"
/translation="MKEQEWDLSALFENKESAEEFLKTLQTEAQEFESTYQNNLKNLD
AAGFANALKHYEDLSEKISKAMTYAQLLFAKNTKEAKFYSQCEMACTNIQQHLLFFEI
EFKNLDAKKQLAFIKKCKNHAFYLNNLIERKKHTLNLDEEKIALALSPVGVGAFSRLF
DEHFSSLKIPFEEQNLSEEEILALLHNPKRKIRKKSQKAFSKALEKSRPLLTYILNMV
RKDLLIETKLRKYDKKESFRHIDNQISQESVDSMIEIVNANFSLVHRYYHQKAQILGH
KLKDYDRYAPLSDENTTMTYSQALEEVLNTLKAFSPEFHKIASKAIKEGWVDSHPKDF
KQGGAFSHGGVPSAHPYVLLNYTGNRRDAFTIAHEFGHMIHQELSKKQGVLNMDTPLT
TAETASVFSEMLFFEHLKKGLKSDELLFMLAGKLEDIFSTLFRQVVMTNFERRIHEID
EELDTKDFDRIWFEENQRMFEKSVKLTKNYHLWWSYIPHFIHSPFYCYAYSYGQLLTL
ALYGLYKKSDAKEFVKTYTEFLSLGGSKSPKELVSMFGFDIDSKEFWEIGMQEVRHLL
EEFERLLACKEN"
misc_feature complement(463478..465181)
/locus_tag="HPKB_0452"
/note="oligoendopeptidase, pepF/M3 family; Region:
M3_fam_3; TIGR02290"
/db_xref="CDD:162797"
misc_feature complement(463505..464905)
/locus_tag="HPKB_0452"
/note="Peptidase family M3B Oligopeptidase F (PepF);
Region: M3B_PepF_5; cd09610"
/db_xref="CDD:189017"
misc_feature complement(order(463694..463696,463706..463708,
463727..463729,464009..464011,464078..464080,
464087..464092))
/locus_tag="HPKB_0452"
/note="active site"
/db_xref="CDD:189017"
misc_feature complement(order(464009..464011,464078..464080,
464090..464092))
/locus_tag="HPKB_0452"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:189017"
gene complement(465291..466541)
/locus_tag="HPKB_0453"
/db_xref="GeneID:12340863"
CDS complement(465291..466541)
/locus_tag="HPKB_0453"
/codon_start=1
/transl_table=11
/product="glutathione-regulated potassium-efflux system
protein"
/protein_id="YP_005761974.1"
/db_xref="GI:384887463"
/db_xref="GeneID:12340863"
/translation="MENSTLYIVIAGLWLAVGFGIFLKKLDMPVIIGYICTGTVLAAF
FKINDFNLLSDIGEFGIVFLMFMIGIEFNFDKLKSIKQEVLVFGLLQVVLCALIAFLL
GYFVLGLSPIFSLVLGMGLSLSSTAIVLKFFEDSKQLSTPMGKSTVGILIFQDIAAIP
MLLILTILGSKDSNVNLLILKTFISAGIILVLLLLPGKKGANLILEQAKDTRLPEIFI
GTILVIVCSAAGLSHFFGFSMSLGAFIAGMAISKSRYKINVQEEFVQLKNLFLALFFI
TIGMQINVSFFIEKFFVVIFLLILVMGFKTAIIYALLRFFRDAKTAIKTALSLAQIGE
FSFVIFLNSGSHQLFNLQEKKGILGFLHQKNILSIAQNDIHQLLILMVVFSMLATPFI
LKYLESIAQFILHQKSQENEPAKK"
misc_feature complement(465303..466541)
/locus_tag="HPKB_0453"
/note="Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: KefB;
COG0475"
/db_xref="CDD:30823"
misc_feature complement(465525..466517)
/locus_tag="HPKB_0453"
/note="Sodium/hydrogen exchanger family; Region:
Na_H_Exchanger; pfam00999"
/db_xref="CDD:201544"
gene complement(466860..467420)
/locus_tag="HPKB_0454"
/db_xref="GeneID:12340864"
CDS complement(466860..467420)
/locus_tag="HPKB_0454"
/codon_start=1
/transl_table=11
/product="outer membrane protein HorE"
/protein_id="YP_005761975.1"
/db_xref="GI:384887464"
/db_xref="GeneID:12340864"
/translation="MIKRIACILSLSTSLALAGEVNGFFMGAGYQQGRYGPYNSNYSD
WRHGNDLYGLNFKLGFVGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDLIV
NLIPLDKFALGLIGGIQLAGNTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKF
PMVNQGSKDVGLIRYYSWYVDYVFTF"
misc_feature complement(466863..467258)
/locus_tag="HPKB_0454"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 467499..468158
/locus_tag="HPKB_0455"
/db_xref="GeneID:12340865"
CDS 467499..468158
/locus_tag="HPKB_0455"
/note="Consensus COG by CONSORF: COG0725"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761976.1"
/db_xref="GI:384887465"
/db_xref="GeneID:12340865"
/translation="MRVFRVKILIKSWISGIRLQNHLKLLKYKLGIITNSNHNKSEFY
EKYFQSVCLFNRIFSSALLAQDLKIAVVANLTCVLKTLVKEFQKEHSKDAISISFNSS
GKLYAQIIQNAPFDLFISADIARPKKIYDEKITPFKEEVYAKGVLVLWSENLKIDSLE
ILKDPKIKRIAMANPKLAPYGKASMEVLGHLKLTSSLKSKIVYGASISQAHQFVATKN
A"
misc_feature 467670..>468155
/locus_tag="HPKB_0455"
/note="ABC-type molybdate transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: ModA; COG0725"
/db_xref="CDD:31069"
misc_feature 467715..>468155
/locus_tag="HPKB_0455"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
gene 469060..469857
/locus_tag="HPKB_0456"
/db_xref="GeneID:12340866"
CDS 469060..469857
/locus_tag="HPKB_0456"
/codon_start=1
/transl_table=11
/product="putative ABC transporter, ATP-binding protein,
polyamine"
/protein_id="YP_005761977.1"
/db_xref="GI:384887466"
/db_xref="GeneID:12340866"
/translation="MIKARFKKRLLGSRGMFDLNIDLEIKEAEVVALLGESGVGRSTI
LRILAGLEAVDSGYIEVNHSVWLDTQKKIFLKPQQRKIGFVFQDYALFPHLNVYQNIA
FAHPKDKNKIHEVLRLMRLENLSQQKILQLSGGQAQRVALARALIAAKNLLLLDEPLN
ALDNALKNEVQQGLLDFIKRENLSVLLVSHNPNEITKLAQTFLFLNNGVIDSNQENRL
FSNRLLIKPLFEDENYCHYEVIPQTISLPKDCLNPTFKLDFIQNKKF"
misc_feature 469060..469683
/locus_tag="HPKB_0456"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 469093..469674
/locus_tag="HPKB_0456"
/note="putative bacteriocin export ABC transporter,
lactococcin 972 group; Region: L_ocin_972_ABC; TIGR03608"
/db_xref="CDD:188353"
misc_feature 469162..469185
/locus_tag="HPKB_0456"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(469171..469176,469180..469188,469318..469320,
469525..469530,469627..469629)
/locus_tag="HPKB_0456"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 469309..469320
/locus_tag="HPKB_0456"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 469453..469482
/locus_tag="HPKB_0456"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 469513..469530
/locus_tag="HPKB_0456"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 469537..469548
/locus_tag="HPKB_0456"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 469615..469635
/locus_tag="HPKB_0456"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(469975..471366)
/gene="gltX"
/locus_tag="HPKB_0457"
/db_xref="GeneID:12340867"
CDS complement(469975..471366)
/gene="gltX"
/locus_tag="HPKB_0457"
/note="Consensus COG by CONSORF: COG0008"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_005761978.1"
/db_xref="GI:384887467"
/db_xref="GeneID:12340867"
/translation="MSLIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIED
TDLSRNSIEAANAIIEAFKWVGLEYDGEILYQSKRFGIYKEYIQKLLDEDKAYYCYMS
KEELDALREEQKARKETPRYDNRYRDFKGTPPKGIEPVVRIKVPQNEMIGFNDGVKGE
VKVNTNELDDFIIARSDGTPTYNFVVTIDDALMGITDVIRGDDHLSNTPKQIVLYKAL
NFKIPNFFHVPMILNEEGQKLSKRHGATNVMDYQEMGYLKEALVNFLARLGWSYQNKE
VFSMQELLECFDPKDLNSSPSCFSWHKLNWLNAHYLKNQSAQELLKLLKPFSFSDLSH
LNPTQLDRLLDALKERSQTLKELALKIDEVLIAPVEYEEKVFKKLNQTLVMPLLEKFK
LELNKVNFNDESALENAMHKIIEEEKIKAGSFMQPLRLALLGKGGGIGLKEALFILGK
TESVKRIENFLKN"
misc_feature complement(469984..471366)
/gene="gltX"
/locus_tag="HPKB_0457"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:179296"
misc_feature complement(470629..471366)
/gene="gltX"
/locus_tag="HPKB_0457"
/note="glutamyl-Q tRNA(Asp) synthetase; Reviewed; Region:
PRK05710"
/db_xref="CDD:180216"
misc_feature complement(471307..471318)
/gene="gltX"
/locus_tag="HPKB_0457"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(471307..471318)
/gene="gltX"
/locus_tag="HPKB_0457"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(order(471307..471309,471316..471318))
/gene="gltX"
/locus_tag="HPKB_0457"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(470425..>470853)
/gene="gltX"
/locus_tag="HPKB_0457"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(order(470650..470655,470677..470682,
470755..470760,470764..470769,470809..470811,
470821..470823))
/gene="gltX"
/locus_tag="HPKB_0457"
/note="active site"
/db_xref="CDD:173905"
misc_feature complement(470641..470655)
/gene="gltX"
/locus_tag="HPKB_0457"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene 471485..472501
/locus_tag="HPKB_0458"
/db_xref="GeneID:12340868"
CDS 471485..472501
/locus_tag="HPKB_0458"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761979.1"
/db_xref="GI:384887468"
/db_xref="GeneID:12340868"
/translation="MQKTLFSLFLPLFLSFCIAEENGAYASVGFEYSISHAIQHNNPF
LNQERIQIISNAQNKIYKLNQVKNEIISMPKTFAYINNNLKNHSKLTPTEMQAEKYYL
QSSFQNIEKIVMLSGGVASNPQLVQALEGMQKPTNSPLELAERLKNLEVQFNQSQNRM
LSSLSSQIAQISNSLNALDPNSYSKNISNMYGVTLNVGYKHFFTKKKNQGFRYYLFYD
YGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNSQKHSSMGFYAGFALAGSSWV
GSGLGMWVSETDFINHYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAG
EFLL"
misc_feature 472067..472483
/locus_tag="HPKB_0458"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 472592..474229
/locus_tag="HPKB_0459"
/db_xref="GeneID:12340869"
CDS 472592..474229
/locus_tag="HPKB_0459"
/codon_start=1
/transl_table=11
/product="type II R-M system methyltransferase"
/protein_id="YP_005761980.1"
/db_xref="GI:384887469"
/db_xref="GeneID:12340869"
/translation="MPSNALSIEEIARLVNVSHSSVHNWIKTNLLEKLEIDHKIYVKT
SSFLDFCRNHLGKNKLNKYANKSLKSVHNHQELILKYLKILENSFDLEKLGSYYEEEL
SNTTRNLEGIYYTPNEIVEQLFTLPKDFDASQAIFCDPAVGSGNFIMHALKLGFKVEN
IYGYDTDAFAIALTKKRIKERYHLDCPNIMQKDFLNLKHTPQFDCIFTNPPWGKKYNQ
NQKENFKQHFNLSQSLDSASLFFIASLNCLKENAHLGLLLPESCLNIDAFSKMREMAL
KFQIRSLIDFNKPFKTLMTKAVGLALKKTPNKDQKISCFYQNSEFKRSPSSFLNNPKK
IFNIHCSSKENKILDHLFSLPHITLKNNAHFALGIVTGNNKEKLHSKQEKNTIPIFRG
SDILKDRLKAPSQFINADLKDCQQVAPLSLYQSREKIVYKFISSKLVFFYDNKQRLFL
NSANMFVLKENFPINANALKELLNSDLMQFIFESLFKTHKILRKDLECLPLFAQFINN
NFDEKFYLKNLGIEKKDPKHFTIRKNHAHRLSFGFRG"
misc_feature 472607..472753
/locus_tag="HPKB_0459"
/note="Helix-turn-helix domain; Region: HTH_17; pfam12728"
/db_xref="CDD:205047"
misc_feature 472694..474220
/locus_tag="HPKB_0459"
/note="Adenine-specific DNA methylase [DNA replication,
recombination, and repair]; Region: COG0827"
/db_xref="CDD:31169"
misc_feature 473003..473371
/locus_tag="HPKB_0459"
/note="Methyltransferase domain; Region: Methyltransf_26;
pfam13659"
/db_xref="CDD:205836"
misc_feature 473750..474094
/locus_tag="HPKB_0459"
/note="TaqI-like C-terminal specificity domain; Region:
TaqI_C; pfam12950"
/db_xref="CDD:193423"
gene 474195..475043
/locus_tag="HPKB_0460"
/db_xref="GeneID:12340870"
CDS 474195..475043
/locus_tag="HPKB_0460"
/note="Consensus COG by CONSORF: COG0859"
/codon_start=1
/transl_table=11
/product="DD-heptosyltransferase"
/protein_id="YP_005761981.1"
/db_xref="GI:384887470"
/db_xref="GeneID:12340870"
/translation="MHIACLLALGDNLITISLLKEVASKQQQPLKILGTHLTLKIARL
LECEKHFEIIPLFENVPAFYDLKKQGVFWAVKDFLLLLKSIKKHQIKHLILEKQDFRS
ALLATFIPITTPNKEIKNVYQNRQELFSQIYGHVFDHSPYSMNLKNPKKILINPFTRS
IERSIPLEHLQIVLKLLKPFCVTLLDFEERYAFLQNEAAHYCAKTSLEEVKNLILESD
LYIGGDSFLIHLAYYLKKNYFIFFYRDNDDFMPPNGKNENFLKAHKSHSIEQDLAKKF
RHLGLL"
misc_feature 474195..475040
/locus_tag="HPKB_0460"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature 474201..>474887
/locus_tag="HPKB_0460"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
misc_feature <474783..475016
/locus_tag="HPKB_0460"
/note="ADP-heptose:LPS heptosyltransferase II;
Provisional; Region: PRK10916; cl15782"
/db_xref="CDD:210182"
gene 475089..476888
/locus_tag="HPKB_0461"
/db_xref="GeneID:12340871"
CDS 475089..476888
/locus_tag="HPKB_0461"
/note="Consensus COG by CONSORF: COG1217. Candidate starts
by CONSORF: 475071,475089"
/codon_start=1
/transl_table=11
/product="GTP-binding protein TypA"
/protein_id="YP_005761982.1"
/db_xref="GI:384887471"
/db_xref="GeneID:12340871"
/translation="MKNIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDS
NDLERERGITILSKNTAIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQE
GVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLFVAMGASDKQLDFP
VVYAAARDGYAMKSLDDEKKNLEPLFETILEHVPSPSGSVEEPLQMQIFTLDYDNYVG
KIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAIA
GFNAMDVGDSVVDPTNPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRL
LKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRREGFEFSISRPEVIIKEENG
VKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYR
SEFLTDTKGEGVMNHSFLEFRPFSGSVESRKNGALISMENGEATAFSLFNIQERGTLF
INPQTKVYVGMVIGEHSRDNDLDVNPIKSKHLTNMRASGSDDAIKLTPPRTMVLERAL
EWIEEDEILEVTPLNLRIRKKILDPNMRKRAKK"
misc_feature 475095..475676
/locus_tag="HPKB_0461"
/note="Tyrosine phosphorylated protein A (TypA)/BipA
family belongs to ribosome-binding GTPases; Region:
TypA_BipA; cd01891"
/db_xref="CDD:206678"
misc_feature 475098..476876
/locus_tag="HPKB_0461"
/note="GTP-binding protein TypA/BipA; Region: TypA_BipA;
TIGR01394"
/db_xref="CDD:162336"
misc_feature 475119..475142
/locus_tag="HPKB_0461"
/note="G1 box; other site"
/db_xref="CDD:206678"
misc_feature order(475122..475124,475128..475130,475140..475145,
475152..475154,475161..475166,475260..475265,
475317..475322,475389..475394,475500..475502,
475512..475514)
/locus_tag="HPKB_0461"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206678"
misc_feature order(475128..475145,475467..475472,475476..475478,
475581..475589)
/locus_tag="HPKB_0461"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206678"
misc_feature 475227..475262
/locus_tag="HPKB_0461"
/note="Switch I region; other site"
/db_xref="CDD:206678"
misc_feature 475248..475250
/locus_tag="HPKB_0461"
/note="G2 box; other site"
/db_xref="CDD:206678"
misc_feature 475305..475316
/locus_tag="HPKB_0461"
/note="G3 box; other site"
/db_xref="CDD:206678"
misc_feature 475311..475367
/locus_tag="HPKB_0461"
/note="Switch II region; other site"
/db_xref="CDD:206678"
misc_feature 475467..475478
/locus_tag="HPKB_0461"
/note="G4 box; other site"
/db_xref="CDD:206678"
misc_feature 475581..475589
/locus_tag="HPKB_0461"
/note="G5 box; other site"
/db_xref="CDD:206678"
misc_feature 475698..475955
/locus_tag="HPKB_0461"
/note="BipA_TypA_II: domain II of BipA (also called TypA)
having homology to domain II of the elongation factors
(EFs) EF-G and EF-Tu. BipA is a highly conserved protein
with global regulatory properties in Escherichia coli.
BipA is phosphorylated on a...; Region: BipA_TypA_II;
cd03691"
/db_xref="CDD:58082"
misc_feature 476274..476510
/locus_tag="HPKB_0461"
/note="BipA_TypA_C: a C-terminal portion of BipA or TypA
having homology to the C terminal domains of the
elongation factors EF-G and EF-2. A member of the ribosome
binding GTPase superfamily, BipA is widely distributed in
bacteria and plants. BipA is a highly...; Region:
BipA_TypA_C; cd03710"
/db_xref="CDD:58063"
gene 476904..477830
/locus_tag="HPKB_0462"
/note="frameshift"
/pseudo
/db_xref="GeneID:12340872"
gene 477836..478459
/locus_tag="HPKB_0464"
/db_xref="GeneID:12340873"
CDS 477836..478459
/locus_tag="HPKB_0464"
/codon_start=1
/transl_table=11
/product="type II restriction endonuclease"
/protein_id="YP_005761983.1"
/db_xref="GI:384887472"
/db_xref="GeneID:12340873"
/translation="MHISEVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQSLSQNI
LTQNVARVYLIVVNGEIKKIGGSQADGGIKSTLNIYKDGGVKGRPNIRSFGVWYFLYH
TILIGAKIEFYMIYQPNFETQVKGLFGFCAIKDASISYKFLEQACLTDYRNNSNDALP
EWNVQEQGKDWPNDIKDEHANITQKAQNREKAVHRKAIDKPSGTLKD"
misc_feature 477983..478330
/locus_tag="HPKB_0464"
/note="Catalytic GIY-YIG domain of coliphage T4
non-specific endonuclease II, type II restriction
endonuclease R.Hpy188I, and similar proteins; Region:
GIY-YIG_EndoII_Hpy188I_like; cd10436"
/db_xref="CDD:198383"
misc_feature order(477986..477994,478022..478030)
/locus_tag="HPKB_0464"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198383"
misc_feature order(477992..477994,478022..478024,478028..478042,
478061..478063,478067..478075,478079..478081,
478256..478258,478265..478267,478322..478330)
/locus_tag="HPKB_0464"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:198383"
misc_feature order(477992..477994,478022..478024,478028..478033,
478061..478063,478073..478075,478265..478267)
/locus_tag="HPKB_0464"
/note="active site"
/db_xref="CDD:198383"
misc_feature 478265..478267
/locus_tag="HPKB_0464"
/note="catalytic site [active]"
/db_xref="CDD:198383"
misc_feature 478265..478267
/locus_tag="HPKB_0464"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198383"
gene 478554..479600
/locus_tag="HPKB_0465"
/db_xref="GeneID:12340874"
CDS 478554..479600
/locus_tag="HPKB_0465"
/note="Consensus COG by CONSORF: COG0270"
/codon_start=1
/transl_table=11
/product="type II DNA modification enzyme
(methyltransferase)"
/protein_id="YP_005761984.1"
/db_xref="GI:384887473"
/db_xref="GeneID:12340874"
/translation="MYKVADIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANH
KKTQTILCDIMQLNCHNLPCVSIDILLGGPPCQSYSTLGKRKMDEKANLFKEYLRLLD
LVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDYGVPQIRERVI
LVGALKSFKQKFHFPKPIKTHFSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR
NSKELSEHSSPKNNEKLIKIMQTLKDGQSKDDLPKNLRPKSGYTNTYAKMWWEKPAPT
ITRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSSSAKRLQIGNAVPPLL
SVALAQAVFDFLKG"
misc_feature 478554..479597
/locus_tag="HPKB_0465"
/note="Site-specific DNA methylase [DNA replication,
recombination, and repair]; Region: Dcm; COG0270"
/db_xref="CDD:30619"
misc_feature 478557..>479132
/locus_tag="HPKB_0465"
/note="Cytosine-C5 specific DNA methylases; Methyl
transfer reactions play an important role in many aspects
of biology. Cytosine-specific DNA methylases are found
both in prokaryotes and eukaryotes. DNA methylation, or
the covalent addition of a methyl group...; Region:
Cyt_C5_DNA_methylase; cd00315"
/db_xref="CDD:73191"
misc_feature order(478575..478592,478641..478652,478707..478718,
478770..478772,478776..478778)
/locus_tag="HPKB_0465"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature order(478770..478772,478779..478784,478791..478802,
478809..478811,478821..478823,478887..478889,
478893..478898,479019..479021,479025..479027,
479118..479120,479124..479126)
/locus_tag="HPKB_0465"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature order(478770..478772,478779..478781,478791..478793,
478887..478889,478893..478895,479019..479021,
479025..479027)
/locus_tag="HPKB_0465"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
misc_feature 479043..479582
/locus_tag="HPKB_0465"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
misc_feature order(479133..479138,479142..479153,479160..479162,
479178..479180,479211..479216,479295..479297,
479376..479381,479385..479390,479535..479537)
/locus_tag="HPKB_0465"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature order(479133..479135,479142..479144,479211..479213,
479295..479297,479535..479537)
/locus_tag="HPKB_0465"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
gene 479602..480354
/locus_tag="HPKB_0466"
/db_xref="GeneID:12340875"
CDS 479602..480354
/locus_tag="HPKB_0466"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761985.1"
/db_xref="GI:384887474"
/db_xref="GeneID:12340875"
/translation="MFNNNDFKDYRKLLGFGSQNAFKEFLGAKDIQPCVDFNYLNALK
KRLIEIFSAINSIYCFKYNEYELECFFKNSIERVFSKIVDTHIIYKLNNQGRRPEEVC
FSWMRGFLVAEFFKDFIACLFSAQKETIKFFGGDNFESIESFKRSPKADFLLDNHLLL
EVQSGFQGINDIKEHKVIEAKRRLITDKIPTIVVHFDLFNGQVACVEISKIKDNDLNW
ITRQQMEGQSVFNISQNFFDYKITEIPNKPLS"
gene complement(480593..481537)
/locus_tag="HPKB_0467"
/db_xref="GeneID:12340876"
CDS complement(480593..481537)
/locus_tag="HPKB_0467"
/note="Consensus COG by CONSORF: COG0753"
/codon_start=1
/transl_table=11
/product="catalase-like protein"
/protein_id="YP_005761986.1"
/db_xref="GI:384887475"
/db_xref="GeneID:12340876"
/translation="MKKIGLSLCLVFSLGFLKAHEVSAEEIADIFYKLNAKEPKMKIN
HTKGFCAKGVFLPNPQAREDLDVPLLNEKEIPASVRYSLGGVAMDDKSKVRGMALKLE
NQNASWTMVMLNTEINFAKNPNEFAQFFEMRIPKNGKVDEARIKKLYEEVPSYRNFAA
YTKTIGISSSVANTPYYSVHAFKFKDKKEKLLPARWKFVPKDGIKYLNPQELKQKDSN
YLLSSFQQHLKTKPIEYQMYLVFANKNDATNDTTALWKGKHKELLVGTLKVEEYEGMG
CNKDVYFPADLPKGVEAPTDPLFQIRNEVYGITFNRRQ"
misc_feature complement(<480596..481537)
/locus_tag="HPKB_0467"
/note="Catalase [Inorganic ion transport and metabolism];
Region: KatE; COG0753"
/db_xref="CDD:31096"
misc_feature complement(480596..481456)
/locus_tag="HPKB_0467"
/note="Catalase-like heme-binding proteins similar to the
uncharacterized srpA; Region: srpA_like; cd08153"
/db_xref="CDD:163709"
misc_feature complement(order(480620..480622,480632..480634,
481160..481162,481184..481186,481199..481201,
481292..481294,481403..481405))
/locus_tag="HPKB_0467"
/note="putative heme binding pocket [chemical binding];
other site"
/db_xref="CDD:163709"
gene 481819..483405
/locus_tag="HPKB_0468"
/db_xref="GeneID:12340877"
CDS 481819..483405
/locus_tag="HPKB_0468"
/codon_start=1
/transl_table=11
/product="outer membrane protein HofC"
/protein_id="YP_005761987.1"
/db_xref="GI:384887476"
/db_xref="GeneID:12340877"
/translation="MKLKKRKVVATLLKRFTLPLLFTTGSLGAVTYEVHGDFINFSKV
GFNHSPINPVKGIYPTETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQVYDSTRYDRWA
KDFTPPSYWDKTSCGTDSLSLCMNATKMWQQSGPGGVINPRGIGWEYMGEWNGLFPNY
YPANAYLPGGSRRYEVYKANLTYDSDRVHMVMGRFDVTEQEQMDWVYQLFQGFYGTFK
LTNKMKFLLFSSWGRGIADGQWLFPIYREKPWGIHKAGIIYRPTKNLMIHPYVYLIPQ
VGTLPGVKVEYDTNPEFRGIGIRNRTTFYALYDYRWNNAEYGRYAPARYNTWDPFLDN
GKWRGLQGPGGATLFLRHHIDINNYFVVGGAYLNIGNPNMNLGTWGNIIAADGIEQWV
GSIYSLGFAGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDY
QFSKHVKAGLKLVWLEFQIRAGYNPGTGFLGPNGQPLNLNNGLFESSAFAQGPQNMGG
IAKSITQDRSHLMTHISYSF"
misc_feature 481846..483402
/locus_tag="HPKB_0468"
/note="Putative outer membrane protein; Region: HP_OMP_2;
pfam02521"
/db_xref="CDD:145585"
gene 483477..484874
/locus_tag="HPKB_0469"
/db_xref="GeneID:12340878"
CDS 483477..484874
/locus_tag="HPKB_0469"
/note="Candidate starts by CONSORF: 483462,483477"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005761988.1"
/db_xref="GI:384887477"
/db_xref="GeneID:12340878"
/translation="MEVKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFG
FNNQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNI
PNGQPGSRTDPFGAGIFWQYIGWYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGV
KGGRYDAEEYDWFTSYTQGVEGFVKYKDTRLRVMYSDARASASSDWFWYFGRYYTSGK
ALMITDLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFP
IFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYG
DPLGYNIWTNSIYDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSL
ALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSD
RSHIMFNIAYGFRIY"
misc_feature 483543..484862
/locus_tag="HPKB_0469"
/note="Putative outer membrane protein; Region: HP_OMP_2;
pfam02521"
/db_xref="CDD:145585"
gene 485276..487492
/locus_tag="HPKB_0470"
/db_xref="GeneID:12340879"
CDS 485276..487492
/locus_tag="HPKB_0470"
/note="Consensus COG by CONSORF: COG0458"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761989.1"
/db_xref="GI:384887478"
/db_xref="GeneID:12340879"
/translation="MKEEDKPGYAVIILNNSKVVLSKFKGDNELKNHYMITSFEADDK
VLRELETIATLSNDYRDGINYSTSNLNEPNPTTNHTKTQDLSPLEQAEAGKLAKLESE
KLESEKEFTRLKEQEQARKVALKKKLEHERGNAGNIESQTKIEVGEDIPTQSQAQIPK
SRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGS
GGFEDLPIVLHDGQVIAGNHRIQGMLNFTPKSRFAYERAIKEYYHIDLKPDELLVRMP
SKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYEPKLKELETQLNADSIYSLKNIV
AKNLNFDKATHPNVTDSNLALLMFNMPRTKTQGIELLNRWQKEFSNDIKSYEKVKKMF
VDNAGSFHNLIHDMNFPKVSLNAYLSDIMDRSFANLKNYQSTSESLKDLSEKFYKTNS
LEMFEKSDQSVSDISEILGGAIARFARFDDPSKALFEALKSENIKKGLKEFKIADVTK
DMFDPNSKEFKDIDIYDFTHYLLMANREPNENNPTLKRLIEAVKDMQKESEKGIKAEA
LKKLNFDEIKKLIDESPNNGKDIIVIGEDNLTPEIVEYIHKKHAKVGIERLNEDEITA
FNFIYPKNAKAIIDYQGIQHALNKHGINSPSVKFSKQPPITYKDIANYRDIVKNADET
VKRDNRIISYKQVNGHFVVVEQINRNKSEFIFKTMFKEKGDYKNAPDYKKNIKEND"
misc_feature 485279..>485527
/locus_tag="HPKB_0470"
/note="Protein of unknown function (DUF3519); Region:
DUF3519; pfam12033"
/db_xref="CDD:152468"
gene complement(488093..488818)
/locus_tag="HPKB_0471"
/db_xref="GeneID:12340880"
CDS complement(488093..488818)
/locus_tag="HPKB_0471"
/note="Consensus COG by CONSORF: COG1432"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761990.1"
/db_xref="GI:384887479"
/db_xref="GeneID:12340880"
/translation="MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDE
RISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSNDIEEILQSSEATKWE
KIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYKALLEQKQVDMLMGLDIQR
IAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRK
LSSNEVKDKLFSIRENLTKTNWA"
misc_feature complement(488099..488806)
/locus_tag="HPKB_0471"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1432"
/db_xref="CDD:31621"
misc_feature complement(488168..488806)
/locus_tag="HPKB_0471"
/note="LabA_like proteins; Region: LabA_like; cd06167"
/db_xref="CDD:199895"
misc_feature complement(order(488285..488287,488291..488293,
488297..488299,488366..488368,488780..488782,
488789..488791))
/locus_tag="HPKB_0471"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:199895"
gene 488949..489422
/gene="ruvC"
/locus_tag="HPKB_0472"
/db_xref="GeneID:12340881"
CDS 488949..489422
/gene="ruvC"
/locus_tag="HPKB_0472"
/note="Consensus COG by CONSORF: COG0817. Candidate starts
by CONSORF: 488946,488949"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase"
/protein_id="YP_005761991.1"
/db_xref="GI:384887480"
/db_xref="GeneID:12340881"
/translation="MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQI
LDLIEALDCLLDRYEVNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYT
PLQVKKALTGNGKATKEQVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRLKPH"
misc_feature 488952..489410
/gene="ruvC"
/locus_tag="HPKB_0472"
/note="Holliday junction resolvases (HJRs) are
endonucleases that specifically resolve Holliday junction
DNA intermediates during homologous recombination. HJR's
occur in archaea, bacteria, and in the mitochondria of
certain fungi, however this CD includes...; Region:
RuvC_resolvase; cd00529"
/db_xref="CDD:29627"
misc_feature order(488967..488969,489144..489146,489363..489365,
489372..489374)
/gene="ruvC"
/locus_tag="HPKB_0472"
/note="active site"
/db_xref="CDD:29627"
misc_feature order(488979..488981,489048..489050,489162..489164,
489183..489185,489258..489260,489267..489269,
489300..489302)
/gene="ruvC"
/locus_tag="HPKB_0472"
/note="putative DNA-binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29627"
misc_feature order(489081..489083,489090..489092,489153..489155,
489168..489170,489177..489182,489189..489194,
489198..489203,489210..489212,489222..489227)
/gene="ruvC"
/locus_tag="HPKB_0472"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29627"
gene complement(489423..491762)
/locus_tag="HPKB_0473"
/db_xref="GeneID:12340882"
CDS complement(489423..491762)
/locus_tag="HPKB_0473"
/note="Consensus COG by CONSORF: COG1629. Candidate starts
by CONSORF: 491795,491762"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761992.1"
/db_xref="GI:384887481"
/db_xref="GeneID:12340882"
/translation="MCFPLLIETCYSADHTLGKVTTQAKRIFTYNNEFKVTSKELDQR
QSNEVKDLFRTNPDVNVGGGSVMGQKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTV
IDPGMLKSVEVTKGSANASAGPGAIAGVIKMETKGAADFIPRGKNYAASGAVSFYTNF
GDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATATKNLFKPTQADKEPGTPSEQNNA
LVKMNGYLSDRDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDSDQGCPNVLDS
FTRYMYHSVNTANNLSLQYKREAGNSFGDPRLDFTLYTSIRNARFDPLFDPNGVYARF
PTSQASAWEKENYPCVEGAYCTPSFSDVDKPSSQPRDLFLNNTGLNLKVAHVIDEATD
SLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRG
KANGNIYGGYVQANYSPHKIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVLSPI
EPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQYFSGRA
AAFYQALDNFISQYAQRLIVTNLSQAIRIYGYEVGGTFKYKGVSLNVGISRTWPTTRG
YLMADSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAE
KPKTPTDLAKCGSQLGLVHMHKPGYGVSNFYINWSPKTKSHWKGLLLSAVFNNVFNKF
YVDQTSPYVMSPDMPGTDAIKRAIAEPGFNARFEVAYKW"
misc_feature complement(489426..491657)
/locus_tag="HPKB_0473"
/note="TonB-dependent hemoglobin/transferrin/lactoferrin
receptor family protein; Region: TonB-hemlactrns;
TIGR01786"
/db_xref="CDD:162537"
misc_feature complement(<490722..491657)
/locus_tag="HPKB_0473"
/note="Porin superfamily. These outer membrane channels
share a beta-barrel structure that differ in strand and
shear number. Classical (gram-negative ) porins are
non-specific channels for small hydrophillic molecules and
form 16 beta-stranded barrels (16,20)...; Region:
OM_channels; cl01155"
/db_xref="CDD:213103"
misc_feature complement(489426..>490421)
/locus_tag="HPKB_0473"
/note="Porin superfamily. These outer membrane channels
share a beta-barrel structure that differ in strand and
shear number. Classical (gram-negative ) porins are
non-specific channels for small hydrophillic molecules and
form 16 beta-stranded barrels (16,20)...; Region:
OM_channels; cl01155"
/db_xref="CDD:213103"
gene 492110..493627
/gene="katA"
/locus_tag="HPKB_0474"
/db_xref="GeneID:12340883"
CDS 492110..493627
/gene="katA"
/locus_tag="HPKB_0474"
/note="Consensus COG by CONSORF: COG0753. Candidate starts
by CONSORF: 492068,492110"
/codon_start=1
/transl_table=11
/product="catalase"
/protein_id="YP_005761993.1"
/db_xref="GI:384887482"
/db_xref="GeneID:12340883"
/translation="MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAA
FDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERG
SADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNP
DMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFE
TMQGVKHLTNEEAAEIRKHDPDSNQRDLFNAIARGDFPKWKLSIQVMPEEDAKKYRFH
PFDVTKIWYLQDYPLMEVGIVELNKNPENYFAEVEQAAFSPANVVPGIGYSPDRMLQG
RLFSYGDTHRYRLGVNYAQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYK
EDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGE
SLAHVTHKEIVDKQLEHFKKADPKYAEGVKKALEKHQKMMKDMHGKDMHHMKKKK"
misc_feature 492113..493561
/gene="katA"
/locus_tag="HPKB_0474"
/note="Catalase [Inorganic ion transport and metabolism];
Region: KatE; COG0753"
/db_xref="CDD:31096"
misc_feature 492254..493558
/gene="katA"
/locus_tag="HPKB_0474"
/note="Clade 3 of the heme-binding enzyme catalase;
Region: catalase_clade_3; cd08156"
/db_xref="CDD:163712"
misc_feature order(492254..492256,492269..492271,492413..492418,
492473..492478,492521..492535,492539..492541,
492548..492550,492566..492583,492593..492595,
492602..492604,492794..492796,492803..492805,
492812..492817,492827..492829,492836..492841,
492848..492850,492917..492922,492935..492937,
492941..492943,493019..493021,493025..493030,
493034..493036,493043..493045,493064..493069,
493091..493093,493097..493099,493106..493108,
493115..493123,493130..493135,493142..493150,
493154..493159,493163..493174,493184..493186,
493196..493201,493205..493207,493214..493216,
493220..493228,493253..493270,493466..493471,
493478..493480,493484..493486,493496..493498)
/gene="katA"
/locus_tag="HPKB_0474"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:163712"
misc_feature order(492275..492277,492392..492394,492494..492496,
492509..492511,492533..492535,493112..493114,
493124..493126)
/gene="katA"
/locus_tag="HPKB_0474"
/note="heme binding pocket [chemical binding]; other site"
/db_xref="CDD:163712"
misc_feature order(492503..492505,492632..492634,492644..492646,
492653..492655,492659..492661,492689..492691,
492755..492757,492761..492763,492956..492967,
493391..493393,493400..493405)
/gene="katA"
/locus_tag="HPKB_0474"
/note="NADPH binding site [chemical binding]; other site"
/db_xref="CDD:163712"
gene 493778..494653
/locus_tag="HPKB_0475"
/db_xref="GeneID:12340884"
CDS 493778..494653
/locus_tag="HPKB_0475"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761994.1"
/db_xref="GI:384887483"
/db_xref="GeneID:12340884"
/translation="MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSI
DFDSAEHTSLFIPMPSVVASNVHLQGNHASYKSMLNFGVPYLQVDFSRSAQKKQVHLS
YEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEM
PKRQKALEGKENLPKRESLPWFATISKESMFVSLCHACGIKSAEVQGLKLAQNSVVKN
ASRVEVYLKDSFLAFDFQNNHKGVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGN
YESKLFEKRMSYTIV"
gene 494740..494955
/locus_tag="HPKB_0476"
/db_xref="GeneID:12340885"
CDS 494740..494955
/locus_tag="HPKB_0476"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005761995.1"
/db_xref="GI:384887484"
/db_xref="GeneID:12340885"
/translation="MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFYYFNFP
LWLNLFLGQTIGAVIFFKLDKLIFSKK"
gene complement(495012..495341)
/gene="phnA"
/locus_tag="HPKB_0477"
/db_xref="GeneID:12340886"
CDS complement(495012..495341)
/gene="phnA"
/locus_tag="HPKB_0477"
/note="Consensus COG by CONSORF: COG2824"
/codon_start=1
/transl_table=11
/product="alkylphosphonate uptake protein"
/protein_id="YP_005761996.1"
/db_xref="GI:384887485"
/db_xref="GeneID:12340886"
/translation="MQDLPPCPKCNDAYTYHDGVQLVCSSCLYEWNENEANDKELIVK
DCHNNLLQNGDSVILIKDLKVKGSSLVLKKGTKIKNIKLVNSDHNVDCKIEGQSLSLK
SEFLKKA"
misc_feature complement(495015..495335)
/gene="phnA"
/locus_tag="HPKB_0477"
/note="alkylphosphonate utilization operon protein PhnA;
Region: phnA; TIGR00686"
/db_xref="CDD:161998"
misc_feature complement(495246..495335)
/gene="phnA"
/locus_tag="HPKB_0477"
/note="PhnA Zinc-Ribbon; Region: PhnA_Zn_Ribbon;
pfam08274"
/db_xref="CDD:116858"
misc_feature complement(495054..495218)
/gene="phnA"
/locus_tag="HPKB_0477"
/note="PhnA protein; Region: PhnA; pfam03831"
/db_xref="CDD:202780"
gene 495654..496388
/gene="cdh"
/locus_tag="HPKB_0478"
/db_xref="GeneID:12340887"
CDS 495654..496388
/gene="cdh"
/locus_tag="HPKB_0478"
/note="Consensus COG by CONSORF: COG2134"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol pyrophosphatase"
/protein_id="YP_005761997.1"
/db_xref="GI:384887486"
/db_xref="GeneID:12340887"
/translation="MKKAGFLFLAMVAIVVMSLNAKDPNVLRKIVFEECLPNYEKNQN
PSPCIEVKPDAGYVVLKDINGPLQYLLMPTTHISGIESPLLLDLSTPNFFYLSWQARD
FMSKKYSKPIPDSAISLTINSHKGRSQNHFHIHISCISLEARKQLDNNLKKINSRWSP
LSGGLSGHKYLARRVTESELAQKSPFIMLAEEVPNARKRMGDYGLAVVQQSDNSFVLL
ATRFNPLTANRASAEEIQDHECAILR"
misc_feature 495654..496385
/gene="cdh"
/locus_tag="HPKB_0478"
/note="CDP-diacylglycerol pyrophosphatase, bacterial type;
Region: cdh; TIGR00672"
/db_xref="CDD:129755"
gene 496605..498761
/gene="flgE"
/locus_tag="HPKB_0479"
/db_xref="GeneID:12340888"
CDS 496605..498761
/gene="flgE"
/locus_tag="HPKB_0479"
/note="Consensus COG by CONSORF: COG1749"
/codon_start=1
/transl_table=11
/product="flagellar hook protein FlgE"
/protein_id="YP_005761998.1"
/db_xref="GI:384887487"
/db_xref="GeneID:12340888"
/translation="MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDM
LSQVKLIATAPYKNGLAGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGF
FIISPDRGITRNFTRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVD
NTGPLENIRIDPGMVMPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINP
VYDSSTNLTQVAEDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLEL
NGVKISFTNDSAVSRTSSLVAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKL
KNIVVTQAGTGAFANFLDGDKDVTAFKYSYTHSISPNADIGQFRTTEDLRALIQHDAN
IVKDPSLADNYQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNN
VLFKNAMKGLNTASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGA
EWNFRVIVPEPGELVGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQ
RINLAFGSSGSFDGLTSVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTL
ALAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDL
SRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ"
misc_feature 496605..498758
/gene="flgE"
/locus_tag="HPKB_0479"
/note="flagellar hook protein FlgE; Validated; Region:
flgE; PRK08425"
/db_xref="CDD:181421"
misc_feature 496617..496709
/gene="flgE"
/locus_tag="HPKB_0479"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature 497421..497582
/gene="flgE"
/locus_tag="HPKB_0479"
/note="Flagellin hook IN motif; Region: Flagellin_IN;
pfam07196"
/db_xref="CDD:148666"
misc_feature 498045..498398
/gene="flgE"
/locus_tag="HPKB_0479"
/note="Flagellar basal body protein FlaE; Region: FlaE;
pfam07559"
/db_xref="CDD:203683"
misc_feature 498516..498752
/gene="flgE"
/locus_tag="HPKB_0479"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 498820..499173
/gene="hypA"
/locus_tag="HPKB_0480"
/db_xref="GeneID:12340889"
CDS 498820..499173
/gene="hypA"
/locus_tag="HPKB_0480"
/note="Consensus COG by CONSORF: COG0375"
/codon_start=1
/transl_table=11
/product="hydrogenase nickel incorporation protein"
/protein_id="YP_005761999.1"
/db_xref="GI:384887488"
/db_xref="GeneID:12340889"
/translation="MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLF
VSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIIT
QGNEMRLLSLEMLAE"
misc_feature 498820..499170
/gene="hypA"
/locus_tag="HPKB_0480"
/note="hydrogenase nickel incorporation protein;
Provisional; Region: hypA; PRK00564"
/db_xref="CDD:179066"
misc_feature 498820..499017
/gene="hypA"
/locus_tag="HPKB_0480"
/note="Hydrogenase expression/synthesis hypA family;
Region: HypA; pfam01155"
/db_xref="CDD:216335"
gene 499180..499641
/locus_tag="HPKB_0481"
/db_xref="GeneID:12340890"
CDS 499180..499641
/locus_tag="HPKB_0481"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005762000.1"
/db_xref="GI:384887489"
/db_xref="GeneID:12340890"
/translation="MQEELNAYQQEIKDTREVLKKIRLELKQVQEILRKKKSALKGLK
QEIYQKKLEKENSRLNKETQNTQEDVVFPKALEEVEIYTNDNQVIMAKPSKRVFDEGL
YLQYRSVLRENRFLKNHLSKKDFENSLLKIELRDLHKEIKLYQVQNLLKDK"
gene 499641..500723
/gene="lpxB"
/locus_tag="HPKB_0482"
/db_xref="GeneID:12340891"
CDS 499641..500723
/gene="lpxB"
/locus_tag="HPKB_0482"
/note="Consensus COG by CONSORF: COG0763"
/codon_start=1
/transl_table=11
/product="lipid-A-disaccharide synthase"
/protein_id="YP_005762001.1"
/db_xref="GI:384887490"
/db_xref="GeneID:12340891"
/translation="MPTILVSALEASSNAHLEELRRNLPKDYRFIGVFEGKNALYSPR
EFSIMGFRDVIGRLGFLLKAHKEMVQLAKQADMVLLMDSSSFNIPLAKKIKRQDPHKK
IMYYILPQVWAWKKWRAKSLEKYCDFLGAILPFEVGYYQKKAQYVGHPLLDEIKYYKK
DIKGETLVFMPGSRKSEIAKMFPLFVKAAQILEQNEGFKRRVLVVPSFFKGLDLKALY
GEDIQLFEISYDAHKSLFEAEFAFICSGTATLEAALIGTPFVLAYRAKTMDFLIARML
VNLHYIGLANIFYNALNNETPGLGESQLHPELIQHFLSVEGLLKAYEEMDRERYFKES
LRLREYLASGSARKIANEMAFLLNLT"
misc_feature 499641..500708
/gene="lpxB"
/locus_tag="HPKB_0482"
/note="ipid-A-disaccharide synthase; Provisional; Region:
PRK14089"
/db_xref="CDD:184498"
misc_feature 499644..500705
/gene="lpxB"
/locus_tag="HPKB_0482"
/note="lipid-A-disaccharide synthase; Region: lpxB;
TIGR00215"
/db_xref="CDD:129319"
gene 500764..501258
/gene="greA"
/locus_tag="HPKB_0483"
/db_xref="GeneID:12340892"
CDS 500764..501258
/gene="greA"
/locus_tag="HPKB_0483"
/note="Consensus COG by CONSORF: COG0782"
/codon_start=1
/transl_table=11
/product="transcription elongation factor GreA"
/protein_id="YP_005762002.1"
/db_xref="GI:384887491"
/db_xref="GeneID:12340892"
/translation="MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKE
NAEYHAAKEKQRFIEARIVDLSEIVANAQVIDPSALAHNKVSFGSTIKILNLDNDKEF
SYTIVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYYKEIC
FDEN"
misc_feature 500764..501231
/gene="greA"
/locus_tag="HPKB_0483"
/note="transcription elongation factor GreA; Reviewed;
Region: greA; PRK00226"
/db_xref="CDD:234693"
misc_feature 500776..500985
/gene="greA"
/locus_tag="HPKB_0483"
/note="Transcription elongation factor, N-terminal;
Region: GreA_GreB_N; pfam03449"
/db_xref="CDD:217565"
misc_feature 501001..501231
/gene="greA"
/locus_tag="HPKB_0483"
/note="Transcription elongation factor, GreA/GreB, C-term;
Region: GreA_GreB; pfam01272"
/db_xref="CDD:201702"
gene 501248..501685
/gene="dut"
/locus_tag="HPKB_0484"
/db_xref="GeneID:12340893"
CDS 501248..501685
/gene="dut"
/locus_tag="HPKB_0484"
/note="Consensus COG by CONSORF: COG0756. Candidate starts
by CONSORF: 501245,501248"
/codon_start=1
/transl_table=11
/product="deoxyuridine 5'-triphosphate
nucleotidohydrolase"
/protein_id="YP_005762003.1"
/db_xref="GI:384887492"
/db_xref="GeneID:12340893"
/translation="MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVMIKPHSVGLVK
IGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKV
QVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA"
misc_feature 501314..501586
/gene="dut"
/locus_tag="HPKB_0484"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature order(501314..501319,501347..501349,501362..501367,
501371..501373,501419..501421,501425..501442,
501458..501466,501482..501484,501491..501493,
501512..501514,501518..501520,501524..501526,
501530..501532,501542..501556,501563..501565,
501575..501577)
/gene="dut"
/locus_tag="HPKB_0484"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature order(501431..501439,501482..501490,501497..501499,
501509..501514)
/gene="dut"
/locus_tag="HPKB_0484"
/note="active site"
/db_xref="CDD:143638"
gene 501682..502338
/locus_tag="HPKB_0485"
/db_xref="GeneID:12340894"
CDS 501682..502338
/locus_tag="HPKB_0485"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005762004.1"
/db_xref="GI:384887493"
/db_xref="GeneID:12340894"
/translation="MSIKENLEQVKNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVA
FIAYLGDTKLQDYKHEQTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARA
SERNDANEFKRLSQSSNEIVKAFAKYSYASLSRDKNLLEKSPVLKEMSALQEVNLLYE
ENSKDAIKKAHQSLSTIPLSSSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETIQGTH
"
gene 502343..503995
/locus_tag="HPKB_0486"
/db_xref="GeneID:12340895"
CDS 502343..503995
/locus_tag="HPKB_0486"
/note="Candidate starts by CONSORF: 502340,502343"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005762005.1"
/db_xref="GI:384887494"
/db_xref="GeneID:12340895"
/translation="MNKPFLILLIALIVFSGCNMKKYFKPAKHQIKGEAYFPNHLQES
IVSSNRNGAILKNGAVIGDKGLTQLRIGKNFNYESSFLNESQGFFILAQDCLNKIDKK
TSKSKVAKTEETELKLKGVEAEVQDKVCHQVELISNNPNASQKSIIIPLETFALSASV
KGNFLAVVLADNSANLYDITSQKLLFSEKGSPSTTINSLMAMPIFMDTVVVFPMLDGR
LLVVDYVHGNPTPIRNIVISSDKFFNNITYLIVDGNNMIASTGKRILSVVSGQEFNYD
GDIVDLLYDKGTLYVLTLDGQILQMDKSLRELNSVKLPFASLNTIVLNHNKLYSLEKR
GYVIEVDLNDFNSYNVYKTPTIGSFKFFSSNRLDKGVFYDKNRVYYDRYYLDYNNFKP
KLYPVVEKPASEKSQKGEKGNAPIYLQERHKVKEKPLEENKVKPRNSGFEEDEVKANQ
RGMEPINHQNNANNKNKVGNENNAIQQGENKNAPASKEDNAFKEAPKLSPKEEKRRLK
EEKKKAKAEQRAREFEQRAKEHQERDEKELEERRKALEMNKK"
misc_feature <502763..503374
/locus_tag="HPKB_0486"
/note="PQQ-like domain; Region: PQQ_2; pfam13360"
/db_xref="CDD:205539"
gene 504000..504671
/locus_tag="HPKB_0487"
/db_xref="GeneID:12340896"
CDS 504000..504671
/locus_tag="HPKB_0487"
/note="Consensus COG by CONSORF: COG1521"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="YP_005762006.1"
/db_xref="GI:384887495"
/db_xref="GeneID:12340896"
/translation="MPARQSFTGLKNLVLCDIGNTRIHFAQNYRLFSSAKEDLKRLGI
QKEIFYISVNEENEKALLNCYPNAKNIAAFFHLETDYIGLGIDRQMACLAVNNGVVVD
AGSAITIDLVKEGKHLGGCILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKNTRDA
VNYGMILSVISCIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAG
ILECK"
misc_feature 504036..504653
/locus_tag="HPKB_0487"
/note="pantothenate kinase; Reviewed; Region: PRK13333"
/db_xref="CDD:183981"
gene 504671..505399
/locus_tag="HPKB_0488"
/db_xref="Gene 