LOCUS NC_017381 1562832 bp DNA circular BCT 24-DEC-2012
DEFINITION Helicobacter pylori 2018 chromosome, complete genome.
ACCESSION NC_017381
VERSION NC_017381.1 GI:385230889
DBLINK Project: 161159
BioProject: PRJNA161159
KEYWORDS .
SOURCE Helicobacter pylori 2018
ORGANISM Helicobacter pylori 2018
Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1562832)
AUTHORS Avasthi,T.S., Devi,S.H., Taylor,T.D., Kumar,N., Baddam,R.,
Kondo,S., Suzuki,Y., Lamouliatte,H., Megraud,F. and Ahmed,N.
TITLE Genomes of Two Chronological Isolates (Helicobacter pylori 2017 and
2018) of the West African Helicobacter pylori Strain 908 Obtained
from a Single Patient
JOURNAL J. Bacteriol. 193 (13), 3385-3386 (2011)
PUBMED 21515762
REFERENCE 2 (bases 1 to 1562832)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2012) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1562832)
AUTHORS Avasthi,T.S., Devi,S.H., Taylor,T.D., Kumar,N., Baddam,R.,
Kondo,S., Suzuki,Y., Lamouliatte,H., Megraud,F. and Ahmed,N.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2011) Pathogen Biology Laboratory, Department of
Biotechnology, University of Hyderabad, School of Life Sciences,
Prof. C.R. Rao Road, Gachibowli, Hyderabad, Andhra Pradesh 500046,
India
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP002572.
Source DNA available from Francis Megraud, Centre National de
Reference des Campylobacter and Helicobacter, Bordeaux, France.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1562832
/organism="Helicobacter pylori 2018"
/mol_type="genomic DNA"
/strain="2018"
/db_xref="taxon:985080"
gene complement(55..471)
/gene="nusB"
/locus_tag="hp2018_0001"
/db_xref="GeneID:12372406"
CDS complement(55..471)
/gene="nusB"
/locus_tag="hp2018_0001"
/codon_start=1
/transl_table=11
/product="Transcription termination protein"
/protein_id="YP_005790809.1"
/db_xref="GI:385230890"
/db_xref="GeneID:12372406"
/translation="MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLV
FALSLFNGVLERINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIII
NECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN"
misc_feature complement(76..462)
/gene="nusB"
/locus_tag="hp2018_0001"
/note="Transcription termination factor NusB (N
protein-Utilization Substance B). NusB plays a key role in
the regulation of ribosomal RNA biosynthesis in eubacteria
by modulating the efficiency of transcriptional
antitermination. NusB along with other Nus...; Region:
Terminator_NusB; cd00619"
/db_xref="CDD:29565"
misc_feature complement(order(448..450,460..462))
/gene="nusB"
/locus_tag="hp2018_0001"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:29565"
gene complement(473..943)
/gene="ribH"
/locus_tag="hp2018_0002"
/db_xref="GeneID:12372432"
CDS complement(473..943)
/gene="ribH"
/locus_tag="hp2018_0002"
/EC_number="2.5.1.9"
/codon_start=1
/transl_table=11
/product="6,7-dimethyl-8-ribityllumazine synthase"
/protein_id="YP_005790810.1"
/db_xref="GI:385230891"
/db_xref="GeneID:12372432"
/translation="MRIIEGKLQLQGNERVAILTSRFNHIITDRLKEGAMDCFKRHGG
DEDLLDLVLVPGAYELPLILDKLLESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIA
SAMLKYSMPVSFGVLTTDNIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLKG"
misc_feature complement(500..898)
/gene="ribH"
/locus_tag="hp2018_0002"
/note="lumazine synthase (6,7-dimethyl-8-ribityllumazine
synthase, LS), catalyzes the penultimate step in the
biosynthesis of riboflavin (vitamin B2); type-I; Region:
Lumazine_synthase-I; cd09209"
/db_xref="CDD:187742"
misc_feature complement(order(503..508,515..517,527..529,536..538,
560..562,572..574,584..586,590..592,596..598,602..604,
614..619,626..640,644..652,656..664,668..673,677..679,
683..688,692..694,725..727,737..739,743..751,755..763,
767..772,779..790,875..877,893..895))
/gene="ribH"
/locus_tag="hp2018_0002"
/note="homopentamer interface [polypeptide binding]; other
site"
/db_xref="CDD:187742"
misc_feature complement(order(527..529,536..538,560..562,593..607,
674..679,683..685,689..706,767..778,872..877))
/gene="ribH"
/locus_tag="hp2018_0002"
/note="active site"
/db_xref="CDD:187742"
gene complement(953..1783)
/gene="kdsA"
/locus_tag="hp2018_0003"
/db_xref="GeneID:12372436"
CDS complement(953..1783)
/gene="kdsA"
/locus_tag="hp2018_0003"
/EC_number="2.5.1.55"
/codon_start=1
/transl_table=11
/product="2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate
synthase"
/protein_id="YP_005790811.1"
/db_xref="GI:385230892"
/db_xref="GeneID:12372436"
/translation="MKTSNTKTPKPVLIAGPCVIESLENLRSIATKLQPLANNERLDF
YFKASFDKANRTSLESYRGPGLEKGLEMLQTIKDEFGYKILTDVHESYQASVAAKVAD
ILQIPAFLCRQTDLIVAVSQTNAIVNIKKGQFMNPKDMQYSVLKALKTRDKSIQSPTY
ETALKNGVWLCERGSSFGYGNLVVDMRSLKIMREFAPVIFDATHSVQMPGGANGKSSG
DSSFAPILARAAAAVGIDGLFAETHIDPKNALSDGANMLKPDELEYLVTDMLKIQNLF
"
misc_feature complement(995..1774)
/gene="kdsA"
/locus_tag="hp2018_0003"
/note="DAHP synthetase I family; Region: DAHP_synth_1;
pfam00793"
/db_xref="CDD:189723"
misc_feature complement(959..1756)
/gene="kdsA"
/locus_tag="hp2018_0003"
/note="2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional; Region: PRK05198"
/db_xref="CDD:179961"
gene complement(1770..2435)
/gene="icfA"
/locus_tag="hp2018_0004"
/db_xref="GeneID:12372438"
CDS complement(1770..2435)
/gene="icfA"
/locus_tag="hp2018_0004"
/EC_number="4.2.1.1"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase"
/protein_id="YP_005790812.1"
/db_xref="GI:385230893"
/db_xref="GeneID:12372438"
/translation="MKAFLGALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVV
PNLITGTKPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGIQNLIICGHSDC
GACGSIHLINDETTKAKTPYIANWIQFLEPIKEELKDHPQFSNHFAKRSWLTERLNVR
LQLNNLLSYDFIQERVMNNELKIFGWHYIIETGRIYNYNFESHFFEPIEETIKQRISH
ENF"
misc_feature complement(1842..2360)
/gene="icfA"
/locus_tag="hp2018_0004"
/note="Carbonic anhydrases (CA) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism in which the nucleophilic
attack of a zinc-bound hydroxide ion on carbon dioxide is
followed by the regeneration of an...; Region:
beta_CA_cladeB; cd00884"
/db_xref="CDD:48223"
misc_feature complement(order(1872..1874,2130..2132,2139..2141,
2169..2171,2184..2186,2265..2267,2274..2276,2310..2318,
2322..2324,2343..2345,2349..2351))
/gene="icfA"
/locus_tag="hp2018_0004"
/note="active site clefts [active]"
/db_xref="CDD:48223"
misc_feature complement(order(2130..2132,2139..2141,2316..2318,
2322..2324))
/gene="icfA"
/locus_tag="hp2018_0004"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:48223"
misc_feature complement(order(1851..1853,1857..1859,1863..1868,
1872..1874,2058..2060,2184..2189,2196..2201,2256..2258,
2262..2264,2268..2276,2289..2300,2304..2306,2310..2321))
/gene="icfA"
/locus_tag="hp2018_0004"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48223"
gene 2558..3241
/gene="pyrF"
/locus_tag="hp2018_0005"
/db_xref="GeneID:12372440"
CDS 2558..3241
/gene="pyrF"
/locus_tag="hp2018_0005"
/EC_number="4.1.1.23"
/codon_start=1
/transl_table=11
/product="Orotidine 5'-phosphate decarboxylase"
/protein_id="YP_005790813.1"
/db_xref="GI:385230894"
/db_xref="GeneID:12372440"
/translation="MQLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGAVFL
DEIRKIDENFKIFLDLKLYDIPYTMANAALECAKLEIGMLTVHLSSGKIALEILMQRL
NALKKRPLIMGVSALTSFSEEEFLSVYNAPLKTQAIKLSTMGKESGIDGVVCSVFESL
AIKENLGKDFLTLTPGIRLNKSDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPRE
VVLELLKDC"
misc_feature 2564..3226
/gene="pyrF"
/locus_tag="hp2018_0005"
/note="Orotidine 5'-phosphate decarboxylase (ODCase) is a
dimeric enzyme that decarboxylates orotidine
5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP),
an essential step in the pyrimidine biosynthetic pathway.
In mammals, UMP synthase contains two...; Region:
OMP_decarboxylase_like; cd04725"
/db_xref="CDD:73387"
misc_feature order(2573..2575,2579..2581,2645..2647,2651..2653,
2732..2734,2738..2740,2906..2911,3080..3082,3176..3181)
/gene="pyrF"
/locus_tag="hp2018_0005"
/note="active site"
/db_xref="CDD:73387"
misc_feature order(2651..2653,2657..2662,2735..2740,2744..2749,
2756..2761,2768..2773,2816..2824,2855..2857,2906..2908,
2963..2965,3179..3181)
/gene="pyrF"
/locus_tag="hp2018_0005"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73387"
gene 3242..4072
/gene="panC"
/locus_tag="hp2018_0006"
/db_xref="GeneID:12372442"
CDS 3242..4072
/gene="panC"
/locus_tag="hp2018_0006"
/EC_number="6.3.2.1"
/codon_start=1
/transl_table=11
/product="Pantoate-beta-alanine ligase"
/protein_id="YP_005790814.1"
/db_xref="GI:385230895"
/db_xref="GeneID:12372442"
/translation="MRVLETIATLREYRKSLKESVGFVPTMGALHRGHQSLIERSLKE
NSHTIVSVFVNPTQFGANEDFSAYPRPLEKDLALCEKLGVSAVFVPKIGEMYPYEAEQ
RLKLYAPTFLSRSLEGAMRKGHFDGVVQVVLRLFHLTNPTRAYFGKKDAQQLLIIQHL
VQDLLLDIEIAPCEIARDDDNLALSSRNVYLNATERKQALAIPKALEKIQQAIDKGEK
ACEKLKKLGLEILENLEVDYLECCNHKLEPLTIIEPTNTLILVAARVGKTRLLDNLWV
"
misc_feature 3242..4069
/gene="panC"
/locus_tag="hp2018_0006"
/note="pantoate--beta-alanine ligase; Region: panC;
TIGR00018"
/db_xref="CDD:161666"
misc_feature 3242..4063
/gene="panC"
/locus_tag="hp2018_0006"
/note="Pantoate-beta-alanine ligase; Region: PanC;
cd00560"
/db_xref="CDD:185673"
misc_feature order(3314..3325,3332..3334,3338..3343,3350..3352,
3404..3406,3413..3415,3443..3445,3623..3625,3632..3637,
3677..3682,3686..3691,3698..3700,3761..3769,3791..3802)
/gene="panC"
/locus_tag="hp2018_0006"
/note="active site"
/db_xref="CDD:185673"
misc_feature order(3314..3322,3332..3334,3341..3343,3350..3352,
3413..3415,3632..3637,3677..3682,3686..3691,3698..3700,
3764..3769,3788..3793)
/gene="panC"
/locus_tag="hp2018_0006"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:185673"
misc_feature order(3314..3316,3320..3322,3404..3406,3413..3415,
3632..3637,3644..3646,3698..3700)
/gene="panC"
/locus_tag="hp2018_0006"
/note="pantoate-binding site; other site"
/db_xref="CDD:185673"
misc_feature 3332..3343
/gene="panC"
/locus_tag="hp2018_0006"
/note="HXXH motif; other site"
/db_xref="CDD:185673"
gene complement(4086..4161)
/locus_tag="hp2018_t01"
/db_xref="GeneID:12372450"
tRNA complement(4086..4161)
/locus_tag="hp2018_t01"
/product="tRNA-Glu"
/db_xref="GeneID:12372450"
gene complement(4220..4297)
/locus_tag="hp2018_t02"
/db_xref="GeneID:12372452"
tRNA complement(4220..4297)
/locus_tag="hp2018_t02"
/product="tRNA-Asp"
/db_xref="GeneID:12372452"
gene complement(4347..4423)
/locus_tag="hp2018_t03"
/db_xref="GeneID:12372365"
tRNA complement(4347..4423)
/locus_tag="hp2018_t03"
/product="tRNA-Val"
/db_xref="GeneID:12372365"
gene complement(4460..4535)
/locus_tag="hp2018_t04"
/db_xref="GeneID:12371182"
tRNA complement(4460..4535)
/locus_tag="hp2018_t04"
/product="tRNA-Glu"
/db_xref="GeneID:12371182"
gene complement(4548..4623)
/locus_tag="hp2018_t05"
/db_xref="GeneID:12371183"
tRNA complement(4548..4623)
/locus_tag="hp2018_t05"
/product="tRNA-Lys"
/db_xref="GeneID:12371183"
gene complement(4624..4788)
/locus_tag="hp2018_0007"
/db_xref="GeneID:12371184"
CDS complement(4624..4788)
/locus_tag="hp2018_0007"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790815.1"
/db_xref="GI:385230896"
/db_xref="GeneID:12371184"
/translation="MASIVILVALSATKVLSVIFVTHAVLRACRFYENRNIFQLFLTS
VKKNCIIIFL"
gene 4797..4934
/locus_tag="hp2018_0008"
/db_xref="GeneID:12371185"
CDS 4797..4934
/locus_tag="hp2018_0008"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790816.1"
/db_xref="GI:385230897"
/db_xref="GeneID:12371185"
/translation="MLVSVSFGVLKRLCFSQALINLIRIQCFFCLKNFIFKKWVFVLS
F"
gene complement(4982..5113)
/locus_tag="hp2018_0009"
/db_xref="GeneID:12371186"
CDS complement(4982..5113)
/locus_tag="hp2018_0009"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790817.1"
/db_xref="GI:385230898"
/db_xref="GeneID:12371186"
/translation="MKNLILIQAIAFKKSASLGGLSWRLKGGEWFQNTPYFLKGMRF"
gene complement(5176..5319)
/locus_tag="hp2018_0010"
/db_xref="GeneID:12371187"
CDS complement(5176..5319)
/locus_tag="hp2018_0010"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790818.1"
/db_xref="GI:385230899"
/db_xref="GeneID:12371187"
/translation="MNSLLNSLFFWGFLFFDFLNSFFLGGFVLKPFFGGFFFKVFLKV
FLF"
misc_feature complement(5439..7351)
/note="potential frameshift: common BLAST hit:
gi|383749069|ref|YP_005424172.1| outer membrane protein
HopZ"
gene complement(5439..5783)
/locus_tag="hp2018_00111"
/db_xref="GeneID:12371188"
CDS complement(5439..5783)
/locus_tag="hp2018_00111"
/codon_start=1
/transl_table=11
/product="outer membrane protein - adhesin"
/protein_id="YP_005790819.1"
/db_xref="GI:385230900"
/db_xref="GeneID:12371188"
/translation="MFTYGVGTDVLYNFINDKATKNSKISFGVFGGIALAGTSWLNSQ
YVNLATFNNFYNAKMNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVFELCVCVLKA
RIKFSFFVKLSF"
misc_feature complement(<5547..>5783)
/locus_tag="hp2018_00111"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(5765..7351)
/locus_tag="hp2018_00112"
/db_xref="GeneID:12371189"
CDS complement(5765..7351)
/locus_tag="hp2018_00112"
/codon_start=1
/transl_table=11
/product="outer membrane protein - adhesin"
/protein_id="YP_005790820.1"
/db_xref="GI:385230901"
/db_xref="GeneID:12371189"
/translation="MVKNTGELKKLSDTYENLSNLLSNFNNLNRAVTNASSPSEINAA
IDNLKANTQGLTGEKDNSPAYQAVSLALNAAVGLWNVIGYAIMCGNGNGTGSGPGSVI
FNNQPGSYSTSITCNRYEATGPGKSMSIQEFEKLNKAYQAIQQALKNGNGFPVLDGKG
TEVEVKYTYECKQTDNNSINGGVNQFCNKNSSSNGVTSSGSNNKETQSFTFTNNAQNL
LEQASTIMNVLNTQCPLVRSTHDENAPGNGSPWGINTDGNACQIFSAEFSAVTSMIKN
AQEIVAQAQSLNTNQQSNQNAPQDFNPYTSSDRAFAQNMLNHAQAQAKMLELADQIKT
NLNTIPSHFVTDYLAACRNGGGTLPNQGVTNNTWGAGCAYVQETITALNNSLAHFGTQ
AEQIKQSELLARTILDFRGSLNTLNSTYNSITTTASNTPNSPFLKNLISQSTNPNNPG
GLKTVYQVNQSAYSQLLSATQELGHNPFRRIGLISSQTNNGAMNGIGVQVGYKQFFGE
KRRWGNPAFSIRLLMCSLMG"
gene complement(7641..7772)
/locus_tag="hp2018_0012"
/db_xref="GeneID:12371190"
CDS complement(7641..7772)
/locus_tag="hp2018_0012"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790821.1"
/db_xref="GI:385230902"
/db_xref="GeneID:12371190"
/translation="MLFIIFYNSPLLGGGFYLTKPLVLKNAQQKIPIKIKILSLAFH"
gene complement(7779..9419)
/gene="groEL"
/locus_tag="hp2018_0013"
/db_xref="GeneID:12371191"
CDS complement(7779..9419)
/gene="groEL"
/locus_tag="hp2018_0013"
/codon_start=1
/transl_table=11
/product="60 kDa chaperonin/Heat shock protein 60"
/protein_id="YP_005790822.1"
/db_xref="GI:385230903"
/db_xref="GeneID:12371191"
/translation="MAKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYG
APSITKDGVSVAKEIELSCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEG
LRNITAGANPIEVKRGMDKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKL
IADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAY
ILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVK
APGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDG
KGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKK
DRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHLNLHDDEKVGYEIIMRAIKAPLAQ
IAINAGYDGGVVVNEVQKHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVS
SLLLTTEATVHEIKEEKAAPAMPDMGGMGGMGGMGGMM"
misc_feature complement(7833..9419)
/gene="groEL"
/locus_tag="hp2018_0013"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12849"
/db_xref="CDD:237230"
misc_feature complement(7860..9413)
/gene="groEL"
/locus_tag="hp2018_0013"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:239460"
misc_feature complement(order(7863..7883,7890..7892,8052..8054,
8265..8267,8271..8273,8652..8654,8736..8738,8832..8834,
9195..9197,9204..9206,9216..9218,9240..9242,9246..9248,
9276..9278,9282..9287,9300..9302,9306..9317,9348..9350,
9399..9401,9411..9413))
/gene="groEL"
/locus_tag="hp2018_0013"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:239460"
misc_feature complement(order(7944..7946,7950..7952,8067..8069,
8178..8180,8229..8231,8973..8975,9150..9152,9162..9164,
9324..9332))
/gene="groEL"
/locus_tag="hp2018_0013"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:239460"
misc_feature complement(order(8028..8030,8037..8042,8046..8048,
8073..8075,8127..8129,9096..9098))
/gene="groEL"
/locus_tag="hp2018_0013"
/note="stacking interactions; other site"
/db_xref="CDD:239460"
misc_feature complement(order(8193..8198,8298..8300,8844..8846,
8865..8867,9000..9002))
/gene="groEL"
/locus_tag="hp2018_0013"
/note="hinge regions; other site"
/db_xref="CDD:239460"
gene complement(9446..9802)
/gene="groES"
/locus_tag="hp2018_0014"
/db_xref="GeneID:12371192"
CDS complement(9446..9802)
/gene="groES"
/locus_tag="hp2018_0014"
/codon_start=1
/transl_table=11
/product="co-chaperonin GroES"
/protein_id="YP_005790823.1"
/db_xref="GI:385230904"
/db_xref="GeneID:12371192"
/translation="MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAVS
HKISEGCKCVKEGDVIAFGKYKGAEIVLDGTEYMVLELEDILGIVGAGSCCHTGNHDH
KHAKEHEACCHDHKKH"
misc_feature complement(9536..9799)
/gene="groES"
/locus_tag="hp2018_0014"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:238197"
misc_feature complement(order(9539..9547,9593..9595,9599..9601,
9614..9616,9644..9646,9692..9697,9776..9778,9785..9787,
9791..9793,9797..9799))
/gene="groES"
/locus_tag="hp2018_0014"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:238197"
misc_feature complement(9710..9751)
/gene="groES"
/locus_tag="hp2018_0014"
/note="mobile loop; other site"
/db_xref="CDD:238197"
misc_feature complement(9668..9670)
/gene="groES"
/locus_tag="hp2018_0014"
/note="roof hairpin; other site"
/db_xref="CDD:238197"
gene 10089..11768
/gene="dnaG"
/locus_tag="hp2018_0015"
/db_xref="GeneID:12371193"
CDS 10089..11768
/gene="dnaG"
/locus_tag="hp2018_0015"
/codon_start=1
/transl_table=11
/product="DNA primase"
/protein_id="YP_005790824.1"
/db_xref="GI:385230905"
/db_xref="GeneID:12371193"
/translation="MILKSSIDRLLQTIDIVEVISSYVDLRKLGSNYMACCPFHEERS
ASFSVNQVKGFYHCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNITLEYDKSAYY
DHKEDYHLLEMVSSLYQEELFNAPFFLNYLQKRGLSMESIKAFKLGLCTNRIDYGIEN
KGLNKDKLIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTLKEKAAKYI
NSPQNKLFDKSSLLYGYHLAKEHIYKQKQVIVTEGYLDVILLHQAGFKNAIATLGTAL
TPSHLPLLKKGDPEILLSYDGDKAGRKAAYKASLMLAKEQRKGGVVLFENNLDPADMI
ANHQIETLKNWLSRPIAFIEFVLRHMAGSYVLDDPLEKDKALKEMLGFLKNFSLLLQN
EYKPLIATLLQAPLHVLGIREPVSFQPFYPKTEKPNHSQKFAHVSSMPSLEFLEKLVI
RYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLDDPKLVALLLDANLPLKKGGF
EKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELVAI"
misc_feature 10089..11294
/gene="dnaG"
/locus_tag="hp2018_0015"
/note="DNA primase, catalytic core; Region: dnaG;
TIGR01391"
/db_xref="CDD:162334"
misc_feature 10092..10385
/gene="dnaG"
/locus_tag="hp2018_0015"
/note="CHC2 zinc finger; Region: zf-CHC2; pfam01807"
/db_xref="CDD:110780"
misc_feature 10440..10805
/gene="dnaG"
/locus_tag="hp2018_0015"
/note="DNA primase catalytic core, N-terminal domain;
Region: Toprim_N; pfam08275"
/db_xref="CDD:203896"
misc_feature 10824..11060
/gene="dnaG"
/locus_tag="hp2018_0015"
/note="TOPRIM_DnaG_primases: The topoisomerase-primase
(TORPIM) nucleotidyl transferase/hydrolase domain found in
the active site regions of proteins similar to Escherichia
coli DnaG. Primases synthesize RNA primers for the
initiation of DNA replication. DnaG...; Region:
TOPRIM_DnaG_primases; cd03364"
/db_xref="CDD:173784"
misc_feature order(10842..10847,10854..10856,10974..10976,10980..10982,
10986..10988)
/gene="dnaG"
/locus_tag="hp2018_0015"
/note="active site"
/db_xref="CDD:173784"
misc_feature order(10842..10844,10974..10976)
/gene="dnaG"
/locus_tag="hp2018_0015"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173784"
misc_feature order(10848..10853,10869..10874,10902..10904)
/gene="dnaG"
/locus_tag="hp2018_0015"
/note="interdomain interaction site; other site"
/db_xref="CDD:173784"
gene 11765..12817
/gene="trmE1"
/locus_tag="hp2018_0016"
/db_xref="GeneID:12371194"
CDS 11765..12817
/gene="trmE1"
/locus_tag="hp2018_0016"
/EC_number="2.1.1.61"
/codon_start=1
/transl_table=11
/product="tRNA-5-methylaminomethyl-2-thiouridylate-
methyltransferase"
/protein_id="YP_005790825.1"
/db_xref="GI:385230906"
/db_xref="GeneID:12371194"
/translation="MKQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKD
KREYFENATAQIGAKLLVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYK
MLELDADFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDPILDRTQASDKKPQ
FLDELLLRPMSAKLLEPTFMEKKGFVDREKLLDVSGRGRARQLQMIKDYGLKYYEKPG
GGCLLTDIQVSNKIKNLKEYREMVFEDGVIVKVGRYFVLPHNARLVVARNEEENNKLD
IQHPLMDKIELLGCKGPLSLVDKNASKEDKELAGRIALGYAKTLKNQAYLIQIGNEKR
ELYPLDKESAREYLFA"
misc_feature 11765..12793
/gene="trmE1"
/locus_tag="hp2018_0016"
/note="Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis]; Region:
TrmU; COG0482"
/db_xref="CDD:30830"
misc_feature 11777..12397
/gene="trmE1"
/locus_tag="hp2018_0016"
/note="ThiI is required for thiazole synthesis in the
thiamine biosynthesis pathway. It belongs to the Adenosine
Nucleotide Hydrolysis suoerfamily and predicted to bind to
Adenosine nucleotide; Region: ThiI; cd01712"
/db_xref="CDD:30167"
misc_feature order(11789..11797,11801..11812,11867..11869,11873..11875)
/gene="trmE1"
/locus_tag="hp2018_0016"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30167"
gene 12910..13737
/locus_tag="hp2018_0017"
/db_xref="GeneID:12371195"
CDS 12910..13737
/locus_tag="hp2018_0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790826.1"
/db_xref="GI:385230907"
/db_xref="GeneID:12371195"
/translation="MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFY
VPYENCYLGRCCINNHKIILPNDLNLKVQAEPEIALECDVKYDEKHLVTKLVPNFFMA
FNDASVRNLDATKLSQKKNFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYDNVWH
IYGENSKLLKYEFFYQKLLDWIKDRLNHQQDGDSLEALRPFLERHNFPTKMVFAIGAT
PYMPFAQEHFLQKGDEVVIIAYNHLQYSFEKIQNLLEEDALQTKEHANLSYVYQIVE"
gene 13883..14164
/locus_tag="hp2018_0018"
/db_xref="GeneID:12371196"
CDS 13883..14164
/locus_tag="hp2018_0018"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790827.1"
/db_xref="GI:385230908"
/db_xref="GeneID:12371196"
/translation="MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGIL
MVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANWFMGIF"
misc_feature <13955..14149
/locus_tag="hp2018_0018"
/note="TrbC/VIRB2 family; Region: TrbC; cl01583"
/db_xref="CDD:242590"
gene 14164..14427
/locus_tag="hp2018_0019"
/db_xref="GeneID:12371197"
CDS 14164..14427
/locus_tag="hp2018_0019"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790828.1"
/db_xref="GI:385230909"
/db_xref="GeneID:12371197"
/translation="MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDL
LSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKTKTKCYRA"
gene 14429..16792
/gene="virB4a"
/locus_tag="hp2018_0020"
/db_xref="GeneID:12371198"
CDS 14429..16792
/gene="virB4a"
/locus_tag="hp2018_0020"
/codon_start=1
/transl_table=11
/product="ATPase"
/protein_id="YP_005790829.1"
/db_xref="GI:385230910"
/db_xref="GeneID:12371198"
/translation="MLEKFLGAIKQKVSNYFLGALPKSYSMSEENNILGLYDEHFLLT
KNENLVGILRLEGVSYTHLSTEQLQDLFTERQMALDSLEKVVACLVVKRRKIDYRQSI
QSDSQYLQAILNQFENKEVYENQYFLVLESAHSLQGVLEHKKKSFMHANRENFKDILS
YKVHFLQETFKSLEIQLKNYAPKLLNSKEVLNFYAEYINGFDLPLKPLVGGYLSDSYI
ASSITFEKDYFIQESFNQKTYNRLIGIKAYESERITSIAVGALLYQETPLDIIFSIEP
MSTHKTLSFLKERAKFSMSSLVKNELLEYQELVKTKRLSMQKFALNVLIKAPSLEDLD
AQTSLILGLLFKENLVGVIETFGLKGGYFSFFPERIHLNHRLRFLTSKALACLMVFER
QNLGFKANSWGNSPLSVFKNLDYSPFLFNFHNQEVSHNNTKEIARVNGHTLVIGATGS
GKSTLISYLMMSALKYQNMRLLAFDRMQGLYSFTEFFKGHYHDGQSFSINPFCLEPNL
QNLEFLQSFFLSMFDLAPSRDKEALEDMNAISSAIKSLYETLYPKDFSLLDFKETLKR
TSSNQLGLSLEPYLNNPLFNALNDAFNSNAFLNVINLDAITQNPKDLGLLAYYLFYKI
LEESRKNDSGFLVFLDEFKSYVENDLLNTKINALITQARKANGVVVLALQDIYQLSGV
KNAHSFLSNMGTLILYPQKNARELKHNFNVPLSETEISFLENTPLYARQVLVKNLGNG
SSNMIDVSLEGLGRYLKIFNSDSSHVNKVKALQKDYPTEWREKLLKS"
misc_feature 14489..16783
/gene="virB4a"
/locus_tag="hp2018_0020"
/note="type IV secretion/conjugal transfer ATPase, VirB4
family; Region: VirB4_CagE; TIGR00929"
/db_xref="CDD:200059"
misc_feature 14951..15553
/gene="virB4a"
/locus_tag="hp2018_0020"
/note="CagE, TrbE, VirB family, component of type IV
transporter system; Region: CagE_TrbE_VirB; pfam03135"
/db_xref="CDD:111973"
misc_feature 15737..>15820
/gene="virB4a"
/locus_tag="hp2018_0020"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature order(15764..15769,15779..15787)
/gene="virB4a"
/locus_tag="hp2018_0020"
/note="Walker A motif; other site"
/db_xref="CDD:29986"
misc_feature order(15767..15769,15779..15787,15845..15847,15851..15856)
/gene="virB4a"
/locus_tag="hp2018_0020"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29986"
misc_feature 16334..>16549
/gene="virB4a"
/locus_tag="hp2018_0020"
/note="TraM recognition site of TraD and TraG; Region:
TraG-D_C; pfam12696"
/db_xref="CDD:205025"
gene complement(16973..17086)
/locus_tag="hp2018_0021"
/db_xref="GeneID:12371199"
CDS complement(16973..17086)
/locus_tag="hp2018_0021"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790830.1"
/db_xref="GI:385230911"
/db_xref="GeneID:12371199"
/translation="MQPVNDIPKITDINRTNIFNLTLLIFLLVCLTNLSVS"
gene 17097..18437
/locus_tag="hp2018_0022"
/db_xref="GeneID:12371200"
CDS 17097..18437
/locus_tag="hp2018_0022"
/codon_start=1
/transl_table=11
/product="putative lipoprotein"
/protein_id="YP_005790831.1"
/db_xref="GI:385230912"
/db_xref="GeneID:12371200"
/translation="MDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDLQNGLSAL
YARDYKTSLGVLDQAEQRFDKTQSAFTRGASYVGATMINDNVRAYGGNIYEGVLINYY
KAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRA
EVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGISQSP
FVAKDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSVALPKLEKG
EAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVAN
YYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSF
SLKPCKRSLESPKIIDARELLSGFVTAPQVFCSNRHNILYVRSFKNGFVLSHLK"
misc_feature 17097..18377
/locus_tag="hp2018_0022"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3014"
/db_xref="CDD:32831"
gene 18544..19509
/gene="cheV"
/locus_tag="hp2018_0023"
/db_xref="GeneID:12371201"
CDS 18544..19509
/gene="cheV"
/locus_tag="hp2018_0023"
/codon_start=1
/transl_table=11
/product="Chemotaxis protein"
/protein_id="YP_005790832.1"
/db_xref="GI:385230913"
/db_xref="GeneID:12371201"
/translation="MADSLAGIDQVTSLHKNNELQLLCFRLGKNKDLYAVNVFKIREV
VKYHGNLTIISHENNSLVEGLIIIRELTIPLIDMKKWFYYDSQNKNKDLRPYRIEKEK
GEDDIVMICEFSRWTIGVRIYEADRILSKKWTEMEQSAGLGGSAGNNKLVSRTRYFDG
RLVQVVDIEKMLIDVFPWIEDEKHNDLETLSKIHSNQCVLLADDSPSVLKTMQMILDK
LGVKHIDFINGKTLLEHLFNPTTDVGNIGLIITDLEMPEASGFEVIKQVKNNPLTSKI
PIVVNSSMSGSSNEDMARSLKADDFISKSNPKDIQRVVKQFLELA"
misc_feature 18598..19056
/gene="cheV"
/locus_tag="hp2018_0023"
/note="CheW-like domain. CheW proteins are part of the
chemotaxis signalling mechanism in bacteria. CheW
interacts with the methyl accepting chemotaxis proteins
(MCPs) and relays signals to CheY, which affects flageller
rotation. This family includes CheW and...; Region:
CheW_like; cd00588"
/db_xref="CDD:238331"
misc_feature 19138..19506
/gene="cheV"
/locus_tag="hp2018_0023"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:223855"
misc_feature 19141..19497
/gene="cheV"
/locus_tag="hp2018_0023"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(19150..19155,19297..19299,19321..19323,19396..19398,
19444..19446,19453..19458)
/gene="cheV"
/locus_tag="hp2018_0023"
/note="active site"
/db_xref="CDD:238088"
misc_feature 19297..19299
/gene="cheV"
/locus_tag="hp2018_0023"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(19306..19311,19315..19323)
/gene="cheV"
/locus_tag="hp2018_0023"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 19453..19458
/gene="cheV"
/locus_tag="hp2018_0023"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene 19506..20723
/gene="nspC"
/locus_tag="hp2018_0024"
/db_xref="GeneID:12371202"
CDS 19506..20723
/gene="nspC"
/locus_tag="hp2018_0024"
/codon_start=1
/transl_table=11
/product="putative Carboxynorspermidine decarboxylase"
/protein_id="YP_005790833.1"
/db_xref="GI:385230914"
/db_xref="GeneID:12371202"
/translation="MKKYSTIPTPCYALESERLEKNAKILEIVRQQSGAKVLLALKGY
AFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPL
ATSIIFNSFHQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKM
SRLGITPSEFEKGVKEHGLEGVSGLHFHTHCEQNADSLCRTLEHVERHFKPYLENMAW
VNFGGGHHITRSDYDVNLLIQTIKDFKKRYHDIEVILEPGEAIGWQCGFLIASVIDIV
QNDQEIAILDASFSAHMPDCLEMPYRPSILKISVENDEEIIEVEKGENQGAFSYFLGG
PTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLAKIDSQGFKI
LKSFSYEDYKNRN"
misc_feature 19524..20720
/gene="nspC"
/locus_tag="hp2018_0024"
/note="carboxynorspermidine decarboxylase; Region: nspC;
TIGR01047"
/db_xref="CDD:188104"
misc_feature 19530..20663
/gene="nspC"
/locus_tag="hp2018_0024"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Carboxynorspermidine Decarboxylase; Region:
PLPDE_III_CANSDC; cd06829"
/db_xref="CDD:143502"
misc_feature order(19530..19532,19629..19631,19692..19697,19701..19706,
19782..19784,19830..19832,19839..19841,19851..19853,
19968..19979,20322..20333,20349..20351,20355..20357,
20361..20363,20370..20372,20505..20507,20511..20519,
20526..20528,20610..20618,20625..20633)
/gene="nspC"
/locus_tag="hp2018_0024"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143502"
misc_feature order(19623..19625,19629..19631,19686..19688,19767..19769,
19926..19928,20067..20069,20076..20078,20172..20177,
20271..20282,20514..20519,20601..20603,20613..20615,
20625..20627)
/gene="nspC"
/locus_tag="hp2018_0024"
/note="active site"
/db_xref="CDD:143502"
misc_feature order(19623..19625,19629..19631,19686..19688,19767..19769,
19926..19928,20067..20069,20076..20078,20172..20177,
20271..20282,20514..20516,20601..20603)
/gene="nspC"
/locus_tag="hp2018_0024"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143502"
misc_feature order(19629..19631,20514..20516)
/gene="nspC"
/locus_tag="hp2018_0024"
/note="catalytic residues [active]"
/db_xref="CDD:143502"
misc_feature order(20076..20078,20280..20282,20514..20519,20601..20603,
20613..20615,20625..20627)
/gene="nspC"
/locus_tag="hp2018_0024"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143502"
gene complement(20734..21318)
/locus_tag="hp2018_0025"
/db_xref="GeneID:12371203"
CDS complement(20734..21318)
/locus_tag="hp2018_0025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790834.1"
/db_xref="GI:385230915"
/db_xref="GeneID:12371203"
/translation="MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGVFIPFPKVPKH
QRVPLALHFTEHYARFIPTILSVAIPLIQRDAIGLFQVANASIATTFLTHATKRALNH
VTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYSFKKYLWLLPLIPLTMLARI
YLDMHTIGAVLAGLGTGMLCVGLFTSPKNLNQKP"
misc_feature complement(20749..21318)
/locus_tag="hp2018_0025"
/note="lipid A 1-phosphatase; Reviewed; Region: PRK09597"
/db_xref="CDD:181978"
misc_feature complement(20737..21219)
/locus_tag="hp2018_0025"
/note="Membrane-associated phospholipid phosphatase [Lipid
metabolism]; Region: PgpB; COG0671"
/db_xref="CDD:31015"
misc_feature complement(order(20812..20814,20824..20826,20842..20844,
20944..20952,20980..20982,21028..21030))
/locus_tag="hp2018_0025"
/note="active site"
/db_xref="CDD:48084"
gene complement(21329..22900)
/locus_tag="hp2018_0026"
/db_xref="GeneID:12371204"
CDS complement(21329..22900)
/locus_tag="hp2018_0026"
/codon_start=1
/transl_table=11
/product="Integral membrane protein"
/protein_id="YP_005790835.1"
/db_xref="GI:385230916"
/db_xref="GeneID:12371204"
/translation="MTSLFHLKFLKPLSCLQAGLLYSLIFGVLYHFPLFAYIYKESNQ
VSFIAMIIIVLFCVNGALFLALGLISASLMRWSAIVFSWLNSVAFYFISAYKVFLNKS
MMGNVLNTNTHEVLGFLSVKLFVFIVVFGVLPGYIIYKIPIKNYSKKAPFLAILALVF
IFITSAFMNAKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPN
HSHSFVVLVIGESARKRNYALYGYQKPTTPRLSKRLKNHELTLFNATSCTTYTTASLE
CILDSSFKNSLGVYENLPTYLTKAGIKVFWYSANDGEKNVKVTSYLKNYELIQKCPNC
EAIAPYDESLLYNLPNLLKERSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSA
DLSSCSKESLINAYDNTIFYNDYLLDKIISMLENAKQPALMIYLSDHGESLGEGAYYL
HGIPKSIAPKEQYEIPFILYANDLFKEKHSIIQTQTPINQNVIFHSVLGVFEDFKTPS
AVYRPSLDLLKHKKE"
misc_feature complement(21332..22900)
/locus_tag="hp2018_0026"
/note="lipid A phosphoethanolamine transferase; Reviewed;
Region: PRK09598"
/db_xref="CDD:181979"
misc_feature complement(22280..22741)
/locus_tag="hp2018_0026"
/note="Domain of unknown function (DUF1705); Region:
DUF1705; pfam08019"
/db_xref="CDD:149223"
misc_feature complement(21398..22231)
/locus_tag="hp2018_0026"
/note="Sulfatase; Region: Sulfatase; pfam00884"
/db_xref="CDD:201490"
gene complement(23394..23837)
/locus_tag="hp2018_0027"
/db_xref="GeneID:12371205"
CDS complement(23394..23837)
/locus_tag="hp2018_0027"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005790836.1"
/db_xref="GI:385230917"
/db_xref="GeneID:12371205"
/translation="MDYNHTYNKSQFFNASSDVWTYGVGSDLLVNFINDKATKHNKIS
FGAFGGIALGGTSWLNSQYVNLANVNNYYKAKINTANFQFLFNLGLRTNLARNKRRGA
DHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY"
misc_feature complement(23397..23837)
/locus_tag="hp2018_0027"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(23815..25446)
/locus_tag="hp2018_0028"
/db_xref="GeneID:12371206"
CDS complement(23815..25446)
/locus_tag="hp2018_0028"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005790837.1"
/db_xref="GI:385230918"
/db_xref="GeneID:12371206"
/translation="MKKKFLSLTLGSLLVSALSAEDNGFFISAGYQIGESTQMVKNTK
GIQDLSDSYERLNNLLTNYSVLNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPA
YQAVLLALNAAAGLWQVMSYAPCGPGKDTSKNGGVQTFHNTPSNQWGGTTITCGTTNY
EPGPYSILSTENYAKINKAYQIIQKAFGSSGKDIPALSDTNTELKLTINKNNGNTNTN
NNGEEIVTKNNAQVLLEQASTIITTLNSACPWINNGGAGGASSGSLWEGIYLKGDGSA
CGIFKNEISAIQDMIKNAEIAVEQSKIVATNAQNQRNLDTGKTFNPYKDANFAQSMFA
NAKAQAEILNRAQAVVKDFERIPAEFVKDSLGVCHEVQNGHLRGTPSGTVTSNTWGAG
CAYVGETVTNLKDSIAHFGDQAERIHNARNLAYTLANFSSQYKKLGEHYDSITAAISS
LPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAAS
TTNNGAMNGIGFQVGYKQQTMGRKVLRLCGLQPHL"
gene 25776..25946
/locus_tag="hp2018_0029"
/db_xref="GeneID:12371207"
CDS 25776..25946
/locus_tag="hp2018_0029"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790838.1"
/db_xref="GI:385230919"
/db_xref="GeneID:12371207"
/translation="MLEICYKNDFFFRFVCKNDFLKRIEKYSVIIIPQKLKDFFKKAE
LSLSFGAFACDY"
gene complement(26043..27323)
/locus_tag="hp2018_0030"
/db_xref="GeneID:12371208"
CDS complement(26043..27323)
/locus_tag="hp2018_0030"
/EC_number="2.3.3.1"
/codon_start=1
/transl_table=11
/product="Citrate synthase"
/protein_id="YP_005790839.1"
/db_xref="GI:385230920"
/db_xref="GeneID:12371208"
/translation="MSVTLINNENNERYEFETIECTRGPKAVDFSKLFETTGFFSYDP
GYSSTAGCQSKISYINGKKGELYYRGHRIEDLVAKYKYVDVCRLLLTGELPKNQDESL
EFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYSTHQNMHTEEDYQT
MARRIVAKIPTLAAICYRNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEV
EITPLEVEAFDKILTLHADHGQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGA
NEKVLLQLEEIGDVKNVDKYIARVKDKNDNFKLMGFGHRVYKSYDPRAKILKGLKDEL
HQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYPNVDFYSGTILRALKIPVRFFTPV
FVIGRTVGWCAQLLEHVKSPQARITRPRQVYVGD"
misc_feature complement(26049..27278)
/locus_tag="hp2018_0030"
/note="Escherichia coli (Ec) citrate synthase (CS)
GltA_like. CS catalyzes the condensation of acetyl
coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate
and coenzyme A (CoA), the first step in the citric acid
cycle (TCA or Krebs cycle). The overall CS...; Region:
EcCS_like; cd06114"
/db_xref="CDD:99867"
misc_feature complement(order(26049..26075,26079..26081,26376..26381,
26493..26498,26502..26519,26523..26528,26547..26549,
26556..26567,26574..26576,26586..26591,26598..26612,
26889..26897,26904..26906,26913..26915,26925..26927,
26937..26939,26949..26957,26961..26966,26973..26975,
27006..27011,27018..27023,27030..27032,27039..27050,
27072..27074,27087..27089,27099..27101,27108..27119,
27153..27155,27159..27209))
/locus_tag="hp2018_0030"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99867"
misc_feature complement(26067..27191)
/locus_tag="hp2018_0030"
/note="Citrate synthase; Region: Citrate_synt; pfam00285"
/db_xref="CDD:201131"
misc_feature complement(order(26070..26072,26079..26081,26133..26135,
26145..26147,26208..26210,26214..26216,26223..26225,
26229..26231,26355..26357,26370..26372,26379..26402,
26487..26489,26496..26498,26502..26510,26601..26603,
26610..26612,27183..27185))
/locus_tag="hp2018_0030"
/note="active site"
/db_xref="CDD:99867"
misc_feature complement(order(26133..26135,26214..26216,26355..26357,
26379..26393,26397..26402,26505..26510,26601..26603,
26610..26612,27183..27185))
/locus_tag="hp2018_0030"
/note="citrylCoA binding site [chemical binding]; other
site"
/db_xref="CDD:99867"
misc_feature complement(order(26754..26756,26820..26822,26832..26834,
26886..26888,26979..26999,27003..27005))
/locus_tag="hp2018_0030"
/note="NADH binding [chemical binding]; other site"
/db_xref="CDD:99867"
misc_feature complement(order(26706..26711,26751..26789,26940..26957,
26964..26990))
/locus_tag="hp2018_0030"
/note="cationic pore residues; other site"
/db_xref="CDD:99867"
misc_feature complement(order(26070..26072,26133..26135,26145..26147,
26208..26210,26355..26357,26382..26384,26502..26507,
26601..26603,26610..26612))
/locus_tag="hp2018_0030"
/note="oxalacetate/citrate binding site [chemical
binding]; other site"
/db_xref="CDD:99867"
misc_feature complement(order(26079..26081,26208..26210,26214..26216,
26223..26225,26229..26231,26370..26372,26379..26381,
26385..26402,26487..26489,26496..26498,26505..26510))
/locus_tag="hp2018_0030"
/note="coenzyme A binding site [chemical binding]; other
site"
/db_xref="CDD:99867"
misc_feature complement(order(26208..26210,26382..26384,26505..26507))
/locus_tag="hp2018_0030"
/note="catalytic triad [active]"
/db_xref="CDD:99867"
gene 27522..28799
/gene="icd"
/locus_tag="hp2018_0031"
/db_xref="GeneID:12371209"
CDS 27522..28799
/gene="icd"
/locus_tag="hp2018_0031"
/EC_number="1.1.1.42"
/codon_start=1
/transl_table=11
/product="Isocitrate dehydrogenase"
/protein_id="YP_005790840.1"
/db_xref="GI:385230921"
/db_xref="GeneID:12371209"
/translation="MAYNPKILQKPKEGEEITIKDNKLHVPNHPIIPFIEGDGIGSDI
TPAMIKVVDSAVQKAYKGEKKIAWYEVFVGEKCYQKFKDHKELSPEEQWLLPDTIEAI
NHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWYGSPSPVKEPQKVDMVI
FRENSEDIYAGIEWQEGSTEAKKLIHFLQNELKVKKIRFPESSGIGVKPISKEGTERL
VRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLK
NPKTGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPG
ANLNDTVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKA
IKSKKVTYDFARLMDGAKEVKCSEFASVMIENM"
misc_feature 27543..28793
/gene="icd"
/locus_tag="hp2018_0031"
/note="isocitrate dehydrogenase; Validated; Region:
PRK07362"
/db_xref="CDD:180944"
misc_feature 27552..28796
/gene="icd"
/locus_tag="hp2018_0031"
/note="isocitrate dehydrogenase; Reviewed; Region:
PRK07006"
/db_xref="CDD:180792"
gene 28870..29397
/locus_tag="hp2018_0032"
/db_xref="GeneID:12371210"
CDS 28870..29397
/locus_tag="hp2018_0032"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790841.1"
/db_xref="GI:385230922"
/db_xref="GeneID:12371210"
/translation="MIKFVRNVVLFILTAIFLVLMLLVSYCMPHYSVAVISGVEVKRM
NENENTPNNKEVKTLARDVYFVQTYDPKDKKSVTVYRNEDTHFSFPFYFKFNSADISA
LAQSLVNQQVEVQYYGWRINLFNMFPNVIFLKPLKESDEMSKPVFSWILYALLLVGFF
ISARSVCALFKGKAH"
misc_feature 28882..29379
/locus_tag="hp2018_0032"
/note="Protein of unknown function (DUF1523); Region:
DUF1523; pfam07509"
/db_xref="CDD:116129"
gene complement(29374..30030)
/gene="bioD"
/locus_tag="hp2018_0033"
/db_xref="GeneID:12371211"
CDS complement(29374..30030)
/gene="bioD"
/locus_tag="hp2018_0033"
/EC_number="6.3.3.3"
/codon_start=1
/transl_table=11
/product="dethiobiotin synthetase"
/protein_id="YP_005790842.1"
/db_xref="GI:385230923"
/db_xref="GeneID:12371211"
/translation="MLFISATNTNAGKTTCARLLAQYCNACGVRTILLKPIETGVNDA
INHFSDAHLFLQDNRLLDRSLTLKDVSFYRYAKASAPLIAQQEEDPNTPIDTDNLTQR
LQNFTKTYDLVIVEGAGGLCVPITLEENMLDLALKLKAKMLLISHDNLGLINDCLLND
FLLKSYQLDYKIAINLRGNNTAFYSISLPYIELFNKRSNNPIVIFQQSLKELMSFALK
"
misc_feature complement(29407..30030)
/gene="bioD"
/locus_tag="hp2018_0033"
/note="Dethiobiotin synthetase [Coenzyme metabolism];
Region: BioD; COG0132"
/db_xref="CDD:30481"
gene complement(30034..31785)
/locus_tag="hp2018_0034"
/db_xref="GeneID:12371212"
CDS complement(30034..31785)
/locus_tag="hp2018_0034"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790843.1"
/db_xref="GI:385230924"
/db_xref="GeneID:12371212"
/translation="MLLNYDFLEMVGDEPQRNLSLTASIDKALADKKLARQNKPRVRV
KDNLSLSETLDAYGREVSRLKNQQGTTIKASTIESANLNSIVNKIKSGLPFGTISAFR
PFKDAFYKDFTEKQRNALIYAYKSGADPKNADIIAQYWLSNSVDLDPYDPIKVDEFFH
PQPENGKETTKFKNYKDMIGDIYAVFYHKLGRGYVDKFFKNRNSTIKDFMSSDKFIKK
YRYTYKDNIKRTQELKSLLDQKRHFLGYLQVTGYWKNSLNDPLLPSKEVSFFVFQNEP
SNSFDLKDQLLDLAKYFNQEAICYCQNAETGKVDLVLATEKDFEVDMTFTGITFTIPL
TQSITRLHNKVYTFFDKQGKDNYGVFFDELSTTKLKAMSMPKIADEFYRQLENRVKSF
IRARQYHGSPRTFDADDIEKYELQAIKRLDLQRCTKSKSFKASYNHNIKVNNLVKALR
QGKKVSKTLIAKVLANTIDTDAGYCFISDLATQLGNISPRLSKSIVTAIEQAEGIRLT
YALIDKVTYNSLHNTLNFIFDIDNPLNDQVFEELVVEVPREALKNVKLPQIKNVLTSQ
IFDGAYQFRGNDYQFKG"
gene 31896..32309
/locus_tag="hp2018_0035"
/db_xref="GeneID:12371213"
CDS 31896..32309
/locus_tag="hp2018_0035"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790844.1"
/db_xref="GI:385230925"
/db_xref="GeneID:12371213"
/translation="MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIY
SESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYD
LLLIGASESNLLYRLFISHQNSLVEQSSIPVVIAK"
misc_feature 31899..32303
/locus_tag="hp2018_0035"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature order(31911..31919,32004..32006,32211..32216,32220..32225,
32253..32261)
/locus_tag="hp2018_0035"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene 32317..32586
/gene="clpS"
/locus_tag="hp2018_0036"
/db_xref="GeneID:12371214"
CDS 32317..32586
/gene="clpS"
/locus_tag="hp2018_0036"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease adaptor protein"
/protein_id="YP_005790845.1"
/db_xref="GI:385230926"
/db_xref="GeneID:12371214"
/translation="MHQIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQELM
LSIHRDGDGVCGVYPYEIAIYKAVCVRDKARALRFPLRLMVQEVK"
misc_feature 32323..32580
/gene="clpS"
/locus_tag="hp2018_0036"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2127"
/db_xref="CDD:225038"
gene 32586..34814
/gene="clpA"
/locus_tag="hp2018_0037"
/db_xref="GeneID:12371215"
CDS 32586..34814
/gene="clpA"
/locus_tag="hp2018_0037"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease ATP-binding subunit"
/protein_id="YP_005790846.1"
/db_xref="GI:385230927"
/db_xref="GeneID:12371215"
/translation="MDKFNKDLNEVLSHALDLALDFNHVLCTTEHVLLAILEHGIGIR
IFNTLEEDNYHKMEQILKDYLQQYIPLKNDPTKIPDRSPVLARVFKKMYASYLDSVGV
EELLIFILEYDDCYASKLLDSFGITRSYFKSALLDFDNPNDINDNDINNEEAPKSTPL
KKYTKNLSTLAQNNALDPVIGREEEILRVIEILGRRKKNNPLLIGEAGVGKTSIAEAL
ALKIAQKEVPEFLQEYEVYSLDLALMVAGAKYRGDFEKRLKKMLKEIQQNGRIILFID
EIHTLLGAGSSNAGSLDAANMLKPVLTDGSLKCLGATTFEEYRSVFEKDKAFNRRFSI
VNIEEPSKEACYLILKNIAPLYEEHHQVRYNESVFKACVDLTSYYMHDKFLPDKAIEL
LDEVGSRKKINPKKGKKISVDDVQETLALKLKIPKMRLNSDKKALLRNLEKSLKNKIF
AQTEAINLVSNAIKIQHCGLSAKNKPVGSFLFVGPSGVGKTELAKELALNLNLHFERF
DMSEYKEAHSVAKLIGSPSGYVGFEQGGLLVNAIKKHPHCLLLLDEIEKAHPNVYDLL
LQVMDNATLSDNLGNQASFKHVILIMTSNVGSKDKDMLGFFSAKNTKYDRAVKELLTP
ELRSRIDAIVPFNVLSLEDFERIVSVELDKLKALALEQGVILKFHKEVVKCIVQKSYQ
TTLGAREIKKIIHNEIKTQLSDILLLQSLKKPCKIACLLEKNQLVLKEIKHAQKVKEN
DF"
misc_feature 32595..34724
/gene="clpA"
/locus_tag="hp2018_0037"
/note="ATP-dependent Clp protease ATP-binding subunit
clpA; Region: ClpA; TIGR02639"
/db_xref="CDD:200207"
misc_feature 33174..33590
/gene="clpA"
/locus_tag="hp2018_0037"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 33198..33221
/gene="clpA"
/locus_tag="hp2018_0037"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(33201..33224,33411..33413,33525..33527)
/gene="clpA"
/locus_tag="hp2018_0037"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 33399..33416
/gene="clpA"
/locus_tag="hp2018_0037"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 33576..33578
/gene="clpA"
/locus_tag="hp2018_0037"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 33999..34409
/gene="clpA"
/locus_tag="hp2018_0037"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 34035..34058
/gene="clpA"
/locus_tag="hp2018_0037"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(34038..34061,34242..34244,34368..34370)
/gene="clpA"
/locus_tag="hp2018_0037"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 34230..34247
/gene="clpA"
/locus_tag="hp2018_0037"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 34500..34769
/gene="clpA"
/locus_tag="hp2018_0037"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene 34804..35157
/gene="panD"
/locus_tag="hp2018_0038"
/db_xref="GeneID:12371216"
CDS 34804..35157
/gene="panD"
/locus_tag="hp2018_0038"
/EC_number="4.1.1.11"
/codon_start=1
/transl_table=11
/product="aspartate 1-decarboxylase"
/protein_id="YP_005790847.1"
/db_xref="GI:385230928"
/db_xref="GeneID:12371216"
/translation="MTFEMLYSKIHRATITDANLNYVGSITIDEDLAKLAKLREGMKV
EIVDINNGERFSTYVILGKKRGEICVNGAAARKVAIGDVVIILAYASMNEDEINTHKP
NIVLVDERNEILEKG"
misc_feature 34813..35136
/gene="panD"
/locus_tag="hp2018_0038"
/note="Aspartate alpha-decarboxylase or L-aspartate
1-decarboxylase, a pyruvoyl group-dependent decarboxylase
in beta-alanine production; Region: Asp_decarbox; cd06919"
/db_xref="CDD:132994"
misc_feature order(34813..34824,34828..34830,34834..34839,34861..34872,
34912..34914,34918..34920,34927..34932,34942..34944,
34948..34950,34957..34959,34963..34977,35020..35025,
35029..35034,35056..35058,35068..35076,35101..35103)
/gene="panD"
/locus_tag="hp2018_0038"
/note="tetramerization interface [polypeptide binding];
other site"
/db_xref="CDD:132994"
misc_feature order(34828..34830,34834..34836,34873..34878,34975..34977)
/gene="panD"
/locus_tag="hp2018_0038"
/note="active site"
/db_xref="CDD:132994"
gene 35160..35462
/locus_tag="hp2018_0039"
/db_xref="GeneID:12371217"
CDS 35160..35462
/locus_tag="hp2018_0039"
/codon_start=1
/transl_table=11
/product="transcriptional regulatory protein"
/protein_id="YP_005790848.1"
/db_xref="GI:385230929"
/db_xref="GeneID:12371217"
/translation="MDFSQLGGLSGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVS
FNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL"
misc_feature 35205..35459
/locus_tag="hp2018_0039"
/note="hypothetical protein; Provisional; Region:
PRK03762"
/db_xref="CDD:179646"
gene 35462..36466
/locus_tag="hp2018_0040"
/db_xref="GeneID:12371218"
CDS 35462..36466
/locus_tag="hp2018_0040"
/codon_start=1
/transl_table=11
/product="Putative periplasmic protein"
/protein_id="YP_005790849.1"
/db_xref="GI:385230930"
/db_xref="GeneID:12371218"
/translation="MLYKALIVFIALLGFLNGLGAYDFKHCQAFFKKASLKNGGVALK
ELPKGVYLYYSKTYPKHAKVIKSDPFIGLYLLQSAPSEYVYTLRDLDKDALIRPMASI
GTNQATEARLLVGQKGYDRYAQISQKTQKNGVISNICYQMLGLGVGGNGFIETKFIKR
FLNQQEPYYGDIGVRLEERHKRLVVAQFDPFFPKNPFLKNDEILAINDQKIRSLAEFE
WVVSNLSYQSLAKVRIKRNHQIKEVTLKVNKRYGGFLLKDTFLERYGIALDERFIITK
IGAHLPKGLDFLKLGDRILWVNHKSVSFNPKALREALSAPKIELLVWRQGFEFYIKVR
"
misc_feature 35975..36199
/locus_tag="hp2018_0040"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature order(35975..35983,35987..35989,36110..36115,36122..36127)
/locus_tag="hp2018_0040"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29046"
gene 36474..37529
/locus_tag="hp2018_0041"
/db_xref="GeneID:12371219"
CDS 36474..37529
/locus_tag="hp2018_0041"
/codon_start=1
/transl_table=11
/product="NADH-ubiquinone oxidoreductase subunit"
/protein_id="YP_005790850.1"
/db_xref="GI:385230931"
/db_xref="GeneID:12371219"
/translation="MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVAL
AFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNHALKNPSRFYELFQNAIFIAPNM
IAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLN
VSVTKALMDASMQEKQDLSLLLVVALFLCCVFIIGVPFFINALFRVQNSLKETYKLAT
NLSANLTQSALQSLQYTTTSPAPSPISTSTSGSVSKEKETHSPTFKVETTQLDVKIPN
FKQKKVKKDTIDTKNEI"
misc_feature 36474..37526
/locus_tag="hp2018_0041"
/note="Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion]; Region: TrbL;
COG3846"
/db_xref="CDD:33637"
gene 37545..37658
/gene="comB7"
/locus_tag="hp2018_0042"
/db_xref="GeneID:12371220"
CDS 37545..37658
/gene="comB7"
/locus_tag="hp2018_0042"
/codon_start=1
/transl_table=11
/product="putative lipoprotein"
/protein_id="YP_005790851.1"
/db_xref="GI:385230932"
/db_xref="GeneID:12371220"
/translation="MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA"
gene 37655..38398
/locus_tag="hp2018_0043"
/db_xref="GeneID:12371221"
CDS 37655..38398
/locus_tag="hp2018_0043"
/codon_start=1
/transl_table=11
/product="DNA transformation competence protein"
/protein_id="YP_005790852.1"
/db_xref="GI:385230933"
/db_xref="GeneID:12371221"
/translation="MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFR
LERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKTEHHFVDFLNQDKHYAIIQRADK
SISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDF
DYASMPKNPTGFKITRYSITEIAPTNRND"
misc_feature 37679..38395
/locus_tag="hp2018_0043"
/note="Type IV secretory pathway, component VirB8
[Intracellular trafficking and secretion]; Region: VirB8;
COG3736"
/db_xref="CDD:33531"
gene 38398..39384
/gene="comB9"
/locus_tag="hp2018_0044"
/db_xref="GeneID:12371222"
CDS 38398..39384
/gene="comB9"
/locus_tag="hp2018_0044"
/codon_start=1
/transl_table=11
/product="competence protein"
/protein_id="YP_005790853.1"
/db_xref="GI:385230934"
/db_xref="GeneID:12371222"
/translation="MRKVLYALMGFLLAFSVLKADDFLEEANETAPANLNHPMQDLNA
IQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMATLLFFSKPISDFVLGDKVGFDA
KILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKI
IKKDIQKGYKALKSSQRKWYCLWACSKKSKLSLMPKEIFNDKQFTYFKFDKRLVLSKF
PVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKRSKGE"
misc_feature 38473..39273
/gene="comB9"
/locus_tag="hp2018_0044"
/note="Type IV secretory pathway, VirB9 components
[Intracellular trafficking and secretion]; Region: VirB9;
COG3504"
/db_xref="CDD:33307"
misc_feature 39127..39357
/gene="comB9"
/locus_tag="hp2018_0044"
/note="VirB9/CagX/TrbG, a component of the type IV
secretion system; Region: VirB9_CagX_TrbG; cd06911"
/db_xref="CDD:132874"
misc_feature order(39127..39138,39151..39168,39322..39324,39337..39357)
/gene="comB9"
/locus_tag="hp2018_0044"
/note="VirB7 interaction site; other site"
/db_xref="CDD:132874"
gene 39377..40507
/gene="virB10"
/locus_tag="hp2018_0045"
/db_xref="GeneID:12371223"
CDS 39377..40507
/gene="virB10"
/locus_tag="hp2018_0045"
/codon_start=1
/transl_table=11
/product="inner membrane protein"
/protein_id="YP_005790854.1"
/db_xref="GI:385230935"
/db_xref="GeneID:12371223"
/translation="MNKWIKGAVVFVGGFATIMTISLIYHQKPKAPLNNQPSLLNDDE
VKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKAALKALNSKEMNYSKEETFTSPP
MDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKV
IGYYSNNNKMGEYRLDIVWSRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRY
GVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMRQSGMGINQVVNQIL
RDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK"
misc_feature 39377..40489
/gene="virB10"
/locus_tag="hp2018_0045"
/note="Type IV secretory pathway, VirB10 components
[Intracellular trafficking and secretion]; Region: VirB10;
COG2948"
/db_xref="CDD:32771"
gene 40577..41989
/gene="manC"
/locus_tag="hp2018_0046"
/db_xref="GeneID:12371224"
CDS 40577..41989
/gene="manC"
/locus_tag="hp2018_0046"
/EC_number="2.7.7.22"
/EC_number="5.3.1.8"
/codon_start=1
/transl_table=11
/product="Mannose-6-phosphate
isomerase/Mannose-1-phosphate guanylyltransferase"
/protein_id="YP_005790855.1"
/db_xref="GI:385230936"
/db_xref="GeneID:12371224"
/translation="MKIKNVLLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKR
NASLVDETLIVCNEKHYFLALEEIKNEIQNKSVGFLLESLSKNTANAISLSALMSDKE
DLLIVTPSDHLIKDLQAYENAMKKAIGLAQKGFLVTFGISIEKPNTEFGYIESPNALD
VKRFIEKPSLEKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESL
ENTHFFEQKIARLSEKSMQDLEDVSVDIALMQQSHKIKMVELNAKWSDLGNFNALFEE
AANESKENVSLNQTPVFAKESENNLVFSHKVSALLGVEDLAIIDTKDALLVAHKDKAK
DLKALVSEIETHNQELLQTHTKVYRPWGSYEVLHESGCYKVKILEVKPNARLSLQKHF
HRSEHWVVISGMASVELDHQSFELQANESTYIPKNTLHRLANYGKIPLIIIEVQVGEY
VGEDDIVRVDDDFNRQNQNA"
misc_feature 40583..41395
/gene="manC"
/locus_tag="hp2018_0046"
/note="GDP-M1P_Guanylyltransferase catalyzes the formation
of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase;
cd02509"
/db_xref="CDD:133003"
misc_feature 40592..41971
/gene="manC"
/locus_tag="hp2018_0046"
/note="mannose-1-phosphate
guanylyltransferase/mannose-6-phosphate isomerase; Region:
GMP_PMI; TIGR01479"
/db_xref="CDD:162382"
misc_feature order(40598..40600,40604..40606,40907..40909)
/gene="manC"
/locus_tag="hp2018_0046"
/note="Substrate binding site; other site"
/db_xref="CDD:133003"
misc_feature 41507..41959
/gene="manC"
/locus_tag="hp2018_0046"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:212615"
gene 42030..43175
/gene="gmd"
/locus_tag="hp2018_0047"
/db_xref="GeneID:12371225"
CDS 42030..43175
/gene="gmd"
/locus_tag="hp2018_0047"
/EC_number="4.2.1.47"
/codon_start=1
/transl_table=11
/product="GDP-D-mannose dehydratase"
/protein_id="YP_005790856.1"
/db_xref="GI:385230937"
/db_xref="GeneID:12371225"
/translation="MKEKIALITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSR
IDHLYEDLHSEHKRRFFLHYGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPE
YTANADGIGTLRILEAMRILGLEKKTRFYQASTSELYGEVLETPQNENTPFNPRSPYA
VAKMYAFYITKNYREAYNLFAVNGILFNHESRVRGETFVTRKITRAASAIAYNLTDCL
YLGNLDAKRDWGHAKDYVKMMHLMLQAPTPQDYVIATGKTTSVRDFVKMSFEFIGIDL
EFQNTGIKEIGLIKSVDEKRANALQLNLSHLKAGKIVVRIDERYFRPTEVDLLLGDPT
KAEKELGWVREYDLKELVKDMLEYDLKECQKNLYLQDGGYILRNFYE"
misc_feature 42039..43118
/gene="gmd"
/locus_tag="hp2018_0047"
/note="GDP-mannose 4,6-dehydratase; Region: gmd;
TIGR01472"
/db_xref="CDD:211658"
misc_feature 42045..43112
/gene="gmd"
/locus_tag="hp2018_0047"
/note="GDP-mannose 4,6 dehydratase, extended (e) SDRs;
Region: GDP_MD_SDR_e; cd05260"
/db_xref="CDD:187570"
misc_feature order(42057..42074,42132..42140,42222..42230,42291..42299,
42303..42305,42348..42350,42426..42434,42504..42506,
42516..42518,42585..42599)
/gene="gmd"
/locus_tag="hp2018_0047"
/note="NADP-binding site; other site"
/db_xref="CDD:187570"
misc_feature order(42063..42068,42132..42149,42156..42161,42219..42227,
42231..42245,42249..42257,42261..42263,42297..42308,
42315..42317,42321..42332,42342..42347,42357..42359,
42366..42371,42378..42380,42387..42392,42483..42494,
42498..42503,42510..42515,42519..42524,42531..42536,
42540..42548,42552..42560,42618..42623,42996..43001)
/gene="gmd"
/locus_tag="hp2018_0047"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(42303..42311,42432..42440,42504..42506,42591..42593,
42618..42626,42633..42635,42684..42695,42702..42704,
42708..42710,42810..42812,42987..42989,42993..42995,
43002..43007)
/gene="gmd"
/locus_tag="hp2018_0047"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(42321..42323,42330..42332,42342..42347,42354..42359,
42366..42371,42378..42380,42483..42494,42498..42503,
42510..42515,42519..42524,42531..42536,42540..42548,
42552..42560,42996..43001)
/gene="gmd"
/locus_tag="hp2018_0047"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(42351..42353,42432..42434,42504..42506,42516..42518)
/gene="gmd"
/locus_tag="hp2018_0047"
/note="active site"
/db_xref="CDD:187570"
gene 43168..44100
/locus_tag="hp2018_0048"
/db_xref="GeneID:12371226"
CDS 43168..44100
/locus_tag="hp2018_0048"
/EC_number="1.1.1.271"
/codon_start=1
/transl_table=11
/product="Putative fucose synthetase"
/protein_id="YP_005790857.1"
/db_xref="GI:385230938"
/db_xref="GeneID:12371226"
/translation="MNEIILITGAYGMVGQNTALYFKKNKPDVTLLTPKKSELYLLDK
DNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA
INLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYMSTEKGVFYKT
LVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKGEKNFAMWGDGTARREYLNAKDLA
RFIALAYENIAQIPSVMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVGMQQKL
MDISKQKALKWELEIPLEQGIKEAYEYYLKLLEV"
misc_feature 43180..44082
/locus_tag="hp2018_0048"
/note="GDP-fucose synthetase, extended (e) SDRs; Region:
GDP_FS_SDR_e; cd05239"
/db_xref="CDD:187550"
misc_feature 43183..44085
/locus_tag="hp2018_0048"
/note="GDP-4-keto-6-deoxymannose-3,
5-epimerase-4-reductase; Region: PLN02725"
/db_xref="CDD:178326"
misc_feature order(43192..43194,43198..43209,43267..43269,43282..43293,
43351..43359,43363..43365,43423..43425,43480..43488,
43573..43575,43585..43587,43654..43659,43663..43665)
/locus_tag="hp2018_0048"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187550"
misc_feature order(43414..43416,43486..43488,43573..43575,43585..43587)
/locus_tag="hp2018_0048"
/note="active site"
/db_xref="CDD:187550"
misc_feature order(43486..43488,43573..43575,43660..43662,43717..43719,
43768..43770,43792..43794)
/locus_tag="hp2018_0048"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187550"
gene 44173..44286
/locus_tag="hp2018_0049"
/db_xref="GeneID:12371227"
CDS 44173..44286
/locus_tag="hp2018_0049"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790858.1"
/db_xref="GI:385230939"
/db_xref="GeneID:12371227"
/translation="MRSQIRFKKLEPLMGVWSLRSQSQAFSKSKACCSDFS"
gene complement(44484..44771)
/locus_tag="hp2018_0050"
/db_xref="GeneID:12371228"
CDS complement(44484..44771)
/locus_tag="hp2018_0050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790859.1"
/db_xref="GI:385230940"
/db_xref="GeneID:12371228"
/translation="MFFVGCSGSEKPPIDIKVTFRNSLYWIDTISNVDSIAILSAKIN
RGNCDNNEGFPYFKINKTLKFGDSYQFYILRCQHIKEVSIETDKGTWNFGK"
gene 44725..44865
/locus_tag="hp2018_0051"
/db_xref="GeneID:12371229"
CDS 44725..44865
/locus_tag="hp2018_0051"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790860.1"
/db_xref="GI:385230941"
/db_xref="GeneID:12371229"
/translation="MSIGGFSLPLHPTKNTANPKMTAHIKPAFFIIPTIKTLSYCKFS
LK"
gene complement(44948..45946)
/gene="hypE"
/locus_tag="hp2018_0052"
/db_xref="GeneID:12371230"
CDS complement(44948..45946)
/gene="hypE"
/locus_tag="hp2018_0052"
/codon_start=1
/transl_table=11
/product="NiFe hydrogenase metallocenter assembly protein"
/protein_id="YP_005790861.1"
/db_xref="GI:385230942"
/db_xref="GeneID:12371230"
/translation="MDSVTLACGNGGKETNALIERVFMPYLKEWIVAFDEDAPTFEAS
GEYCVSTDSFVITPLIFNGGDIGKLCVCGSANDVSVQGGEPLYLNMGFILEEGLEIPL
LKQILQSIQKELFKANLKLLSLDTKVVPKGSVDKLFINTTCMGKIIKPGISSRHLQQG
QAIILSDTIANHGASLFATRHEIKLKTNLESDCQLLYPLLKPLFLSDLKIDALRDATR
GGLASVLNEWANSSRVKIVIEEEKIPLKEETKGICEILGLEPYALANEGVFVLALNQK
DAPKALEILKSNEKAKNACVIGGVFNNPYPSVVLKNAWGFERILEVPEGELLPRIC"
misc_feature complement(45047..45919)
/gene="hypE"
/locus_tag="hp2018_0052"
/note="HypE (Hydrogenase expression/formation protein).
HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE
dehydrates its own carbamoyl moiety in an ATP-dependent
process to yield the enzyme thiocyanate. The N-terminal
domain of HypE is related to the...; Region: HypE;
cd02197"
/db_xref="CDD:100033"
misc_feature complement(order(45293..45295,45302..45307,45527..45529,
45533..45535,45551..45553,45557..45559,45566..45568,
45572..45574,45680..45682,45716..45718,45788..45793,
45797..45814,45899..45907))
/gene="hypE"
/locus_tag="hp2018_0052"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100033"
misc_feature complement(44951..45904)
/gene="hypE"
/locus_tag="hp2018_0052"
/note="hydrogenase expression/formation protein HypE;
Region: hypE; TIGR02124"
/db_xref="CDD:162715"
misc_feature complement(order(45293..45298,45716..45718,45791..45793))
/gene="hypE"
/locus_tag="hp2018_0052"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100033"
gene complement(45949..48201)
/gene="hypF"
/locus_tag="hp2018_0053"
/db_xref="GeneID:12371231"
CDS complement(45949..48201)
/gene="hypF"
/locus_tag="hp2018_0053"
/codon_start=1
/transl_table=11
/product="NiFe hydrogenase metallocenter assembly protein"
/protein_id="YP_005790862.1"
/db_xref="GI:385230943"
/db_xref="GeneID:12371231"
/translation="MNKITLFGVVQGVGMRPFVYTLAQKLGLVGFTRNAQAALEIVLP
AHKTESFLNALKKGLPPLALVEKIIISPYDKALHFNDFRILESKNHPLNLLSQIPKDL
GVCEDCLREIRNKNSPYFHYAFNSCAKCGARYSLLNAMPYDRENSALKPFKLCGFCTS
VYKDATNKRFHIQGISCKKCGIALNYKRFKNDDALLECAKDIQKGKIIALKGLGGFAL
LCDARNFKTIERLRLLKNRPLKPFALMFKDLNAAKQHAFLNALECESLNSVSAPILLA
RKKPDTQLAPNIAKNSPFYGVILPYTPLHALLLDLLDSPIVFTSANFSSLPLASDEKE
IDSLHFIFDFKLTHNRAIIHRIDDSIAQRVDNAIRPMRLARGFAPLYLTLPKRSNHPQ
KKILALGAEQKGHFSLLDSETSVVLLSPFCGDLSVLENEKHFKETLNFFLKTYDFKPT
LLACDKHQNYTTTKMAFDFNTPLLQVQHHHAHFLASILDALLQDPHLNHPFIGIVWDG
SGAYENKVYGAECFVGDLERIEEVARFEEFWLLGGQKAIKEPRRLVLEIALKHQLNKL
LKRVQKHFKEDELGIFKQMHDKKIQSVATNSIGRLFDIVAFSLDLVGTISFEAESGQV
LENLALQSDENAFYPFEIKNSVVRLKEFYQAFEKDLGVLEPNRIAKKFFNSLVEIITA
LITPFKGHVVVCSGGVFCNQLLCEQLAKRFKKLQREYFFHKHFPPNDSSIPVGQALMA
YFNPIIIKKG"
misc_feature complement(47947..48201)
/gene="hypF"
/locus_tag="hp2018_0053"
/note="Acylphosphatase; Region: Acylphosphatase;
pfam00708"
/db_xref="CDD:201408"
misc_feature complement(45979..48096)
/gene="hypF"
/locus_tag="hp2018_0053"
/note="[NiFe] hydrogenase maturation protein HypF; Region:
hypF; TIGR00143"
/db_xref="CDD:161730"
misc_feature complement(47788..47892)
/gene="hypF"
/locus_tag="hp2018_0053"
/note="HypF finger; Region: zf-HYPF; pfam07503"
/db_xref="CDD:203656"
misc_feature complement(<47659..47742)
/gene="hypF"
/locus_tag="hp2018_0053"
/note="HypF finger; Region: zf-HYPF; pfam07503"
/db_xref="CDD:203656"
misc_feature complement(47080..47556)
/gene="hypF"
/locus_tag="hp2018_0053"
/note="Telomere recombination; Region: Sua5_yciO_yrdC;
pfam01300"
/db_xref="CDD:201719"
gene complement(48198..49190)
/locus_tag="hp2018_0054"
/db_xref="GeneID:12371232"
CDS complement(48198..49190)
/locus_tag="hp2018_0054"
/EC_number="3.5.3.12"
/codon_start=1
/transl_table=11
/product="Agmatine deiminase"
/protein_id="YP_005790863.1"
/db_xref="GI:385230944"
/db_xref="GeneID:12371232"
/translation="MKRMLAEFEKIQAILMAFPHEFGDWAYCIEEARESFLHIIQTIA
QHAKVLVCVHTNDTIGYETLKNLPGVEIARIDTNDTWARDFGAISVENHGVLECLDFG
FNGWGLKYPSNLDNLVNFKLKHLGFLKHPLKTMPYVLEGGSIESDGAGSVLTNTQCLL
EKNRNPHLNQNGIENMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLNKDTIVYS
ACKDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAIFDENQQRLPATYVNFL
LCNNALIVPTYNDPKDALILETLKQHTPLEVIGVDCNTLIKQHGSLHCVTMQLY"
misc_feature complement(48201..49190)
/locus_tag="hp2018_0054"
/note="Peptidylarginine deiminase and related enzymes
[Amino acid transport and metabolism]; Region: COG2957"
/db_xref="CDD:32777"
misc_feature complement(48201..49184)
/locus_tag="hp2018_0054"
/note="agmatine deiminase; Region: agmatine_aguA;
TIGR03380"
/db_xref="CDD:132423"
gene complement(49242..49940)
/locus_tag="hp2018_0055"
/db_xref="GeneID:12371233"
CDS complement(49242..49940)
/locus_tag="hp2018_0055"
/EC_number="2.1.1.72"
/codon_start=1
/transl_table=11
/product="Adenine-specific methyltransferase"
/protein_id="YP_005790864.1"
/db_xref="GI:385230945"
/db_xref="GeneID:12371233"
/translation="MIQIYHANAFEIIKDFHQQNLKVDAIITDPPYNISVQNNFSTLK
SAKRQGIDFGEWDKNFKLLEWIARYAPLINPNGCMVIFCSYRFISYIADFLEENGFVV
KDFIQWVKNNPMPRNIHRRYVQDTEFALWAVKKKAKWVFNKPENEKYLRPLILKSPVV
SGIERVKHPTQKSLALMEKIVSIHTNPNNVVLDPFMGSGTTGLACKNLKRKFIGIESE
KEYFQTAQKRLNLF"
misc_feature complement(49251..49940)
/locus_tag="hp2018_0055"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature complement(49260..49874)
/locus_tag="hp2018_0055"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(49918..50475)
/locus_tag="hp2018_0056"
/db_xref="GeneID:12371234"
CDS complement(49918..50475)
/locus_tag="hp2018_0056"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790865.1"
/db_xref="GI:385230946"
/db_xref="GeneID:12371234"
/translation="MLVSRFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIPGY
EESKARVLDALNILSVHQIWQSNQESVTKVKGTFVFILENDLNLDENAFYKKLLNLLI
DNDFFNRSHLVTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNA
VPPLLALALGKAILKSARNDTNLSR"
misc_feature complement(49999..>50133)
/locus_tag="hp2018_0056"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(50631..51890)
/locus_tag="hp2018_0057"
/db_xref="GeneID:12371235"
CDS complement(50631..51890)
/locus_tag="hp2018_0057"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790866.1"
/db_xref="GI:385230947"
/db_xref="GeneID:12371235"
/translation="MKEQQIIDFLKLRDYDIRKTQNARWIDQKCAPDVLSIVADCILE
FTQYNIEKSFSIRDIWDSPYTNENVKMIFSKPDLNSDFSMHEYDKFFSQPIKLLAYSG
ILFETKTGNRNIYTIQNIELLEYLMQRETNALKFLILYIQKVLMDSGIDSIFDNFLQK
QDTESFKQLKDGFTHFTINNTAIKNTTECFRIFTKIINPLAFYYGKKGTRKGFLSNTI
ITKDELNYNRINWRDIGKDKNTTRQEYDLINSKRIANSNYLISKAKKVVKQYNDKFNH
SLSEVKGENETAQATQIHHIFPVQDFPLIADYIENLIALTPNQHFIYAHPNNQTRLID
RDFQYICLLAKTNVIFNDTQGVYDWKHYIFVLNMGLKTTIFSQVNNEWELLRAIDTFY
FDFNKSKDPSWQYLLDKNDLRAFKLKF"
gene complement(51890..54358)
/locus_tag="hp2018_0058"
/db_xref="GeneID:12371236"
CDS complement(51890..54358)
/locus_tag="hp2018_0058"
/codon_start=1
/transl_table=11
/product="adenine/cytosine DNA methyltransferase"
/protein_id="YP_005790867.1"
/db_xref="GI:385230948"
/db_xref="GeneID:12371236"
/translation="MLFNQTLTYISLFSGAGVGCYGLLEEGFECVATNEILEKRLNIQ
RINNKCKFDEGYICGDIKELEIKEKILKQIGFYSKKFGNDRVDLVVATPPCQGMSVAN
HKKKNDEIKRNSLVVESVDLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQ
NLSGDYMLYDEVINFKNFGANSSRTRTLVIGVCKEFKDFISALEFFPDFKQEKTLKEV
IGSLKPLTWGEYDSADFYHSFRTYPKHMQEWIKDLKEGQSAFENTELNKKPHRVVGNK
IVLNVSKNGDKYKRQKYHSVAPCIHTRNDQMASQNTIHPKDDRVFSIRELMLLMNIPS
RFKWLDLELQELNALNQQEKEKISKQNEMNIRQSIGEAVPTIIFKQIAIKIKNFMSQT
HLEPKEIIRLIDAHHLLEPKNLKRFILENKNKIARASLVSLAEMSNSKRIEKSAYFTN
PFIINEIAKLLPSFKQESVTIIEPSVGCGNFLSALFKKYASVKKVYLKCIDIDKNSLE
ILEILYKDCIPNNFEMELICTDFLAYECDKVDLIVGNPPFGKTHERFKDYSLGLTHLA
GIFLEKSLKLANFTAMVMPKNLLNTKEYAETRTKLEKKGVGAILDFGELGFKGVLVET
IAIVTQKSKEVLARSLPLNLSIKQKPSYIFDKQLPYWVIYRNAFFDKVFHSMQFGLFE
VFRDRQITNSVLVKNGIRVIKSRNIDENGKIISIENYDSYIQKEVLNPFKIASFLDRD
DVYLTPNMTYKPRILKKEKGYVVNGSVAILIPKNPISLSKKQCDYISSVGFRDFYKIA
RNYQTRTLNIDSMSCFWFGILKDS"
misc_feature complement(53192..54349)
/locus_tag="hp2018_0058"
/note="Site-specific DNA methylase [DNA replication,
recombination, and repair]; Region: Dcm; COG0270"
/db_xref="CDD:30619"
misc_feature complement(<53702..54340)
/locus_tag="hp2018_0058"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
misc_feature complement(order(54077..54079,54083..54085,54134..54139,
54179..54184,54248..54259,54305..54322))
/locus_tag="hp2018_0058"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature complement(order(53801..53803,53807..53809,53948..53953,
53957..53959,54023..54025,54041..54043,54053..54064,
54071..54076,54083..54085))
/locus_tag="hp2018_0058"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature complement(order(53801..53803,53807..53809,53951..53953,
53957..53959,54062..54064,54074..54076,54083..54085))
/locus_tag="hp2018_0058"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
misc_feature complement(51899..53209)
/locus_tag="hp2018_0058"
/note="Adenine-specific DNA methylase [DNA replication,
recombination, and repair]; Region: COG0827"
/db_xref="CDD:31169"
misc_feature complement(<52688..52951)
/locus_tag="hp2018_0058"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(52724..52726,52766..52774,52853..52858,
52919..52939))
/locus_tag="hp2018_0058"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
misc_feature complement(52460..52747)
/locus_tag="hp2018_0058"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(54398..55888)
/gene="putP"
/locus_tag="hp2018_0059"
/db_xref="GeneID:12371237"
CDS complement(54398..55888)
/gene="putP"
/locus_tag="hp2018_0059"
/codon_start=1
/transl_table=11
/product="Proline/sodium/Propionate symporter"
/protein_id="YP_005790868.1"
/db_xref="GI:385230949"
/db_xref="GeneID:12371237"
/translation="MGHVVLSTPIVTMFVVYSLLMLYIGFYFYKQNETTEDYFLGDRS
MGPVISALSAGASDMSGWLLMGLPGALYVGGLINSHIAIGLSLGALINWVFVAKRLRV
YTSVIANSITISDYFETRFSDDKHILRLISAFVILIFFIFYISSGLVSGAKLFEATFG
IQYSYALSIGTLIIVSYTFLGGYKAVCWTDLIQGLLMMSALIVVPIVMIIHLGGIGEG
IKIIREIKPENLSFLQGSSVVAIISSLAWGLGYFGQPHILVRFMSIRSIKDVPKATII
GISWMVISLIGACVMGLLGVAYAHKFDLSLEDPEKIFIVMSQLLFNPWITGILLSAIL
AAVMSTASSQLLVSSSTIAEDFYATIFNKNAPQKLVMVISRLSVLGVACIAFFISTDK
NASILSIVSYAWAGFGASFGSVILFSLFWSRMTRIGAIAGMLSGASTVILYDKFGKSF
LDIYEIVPGFIVASIAIVAFSLFSSVRAGTKEAFETMLKEIESLRR"
misc_feature complement(54467..55864)
/gene="putP"
/locus_tag="hp2018_0059"
/note="Predicted symporter [General function prediction
only]; Region: DhlC; COG4147"
/db_xref="CDD:33899"
misc_feature complement(54470..55858)
/gene="putP"
/locus_tag="hp2018_0059"
/note="Na(+)/proline cotransporter PutP and related
proteins; solute binding domain; Region: SLC5sbd_PutP;
cd11475"
/db_xref="CDD:212045"
misc_feature complement(order(54869..54874,54881..54883,55712..55714,
55721..55723))
/gene="putP"
/locus_tag="hp2018_0059"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212045"
gene complement(55915..59472)
/locus_tag="hp2018_0060"
/db_xref="GeneID:12371238"
CDS complement(55915..59472)
/locus_tag="hp2018_0060"
/EC_number="1.5.1.12"
/EC_number="1.5.99.8"
/codon_start=1
/transl_table=11
/product="Proline dehydrogenase /oxidase/
Delta-1-pyrroline-5-carboxylate dehydrogenase"
/protein_id="YP_005790869.1"
/db_xref="GI:385230950"
/db_xref="GeneID:12371238"
/translation="MQKIIEDSLELAKKLQDSISSHLSEQEKAFHSKMQKLLNNPENK
VMLIELMDRSFRCLDNKARFEMIEHVLDKYKSREIFSSFEKWLLMGFLSFGKMLPDMS
VPFFVNKIRSDTKAMVLDQEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFE
KYSQALKSNYIQYISIKITTIFSQINILDFEYSKKEIVKRLDALYALALEEEKKQGMP
KFINLDMEEFRDLELTVESFMESIAKFDLNAGIVLQAYIPDSYEYLKKLHAFSKERVL
KGLKPIKIRFVKGANMESEETIASMKDWALPTFSNKQDTDSNYNKMLDFVLEGDNYKY
IHIGAASHNIFEIAYVYTRIHALNDPVVLEHFSFEMLEGMSLQASQELKEMHKLILYA
PVCDEAHFNNAIAYLVRRLDENTSSDNFMKAFFNLKVGTSEWKDQEQRFLNSLKGIAT
LDNTTHRTQDRNAKQTGHTTYPNHSFKNESDTDFILKANREWAKKVREKMHNAPILEL
YPEIDGRFEDPNLTPLEVFDKIHHKKIASVHLADKEAILKALEVAKSDKSHFSQKSFT
EIHALLSQTAQIFRERRGDLVGISALEVGKTFAETDAEVSEAIDFLEFYPYSLRVLQE
QNEKTQFTPKGVGVVIAPWNFPVGISVGTIAAPLAAGNRVIYKPSSLSSVTGYKLCEC
FWDAGVPRDALIYLPSKGSDISEHLLKDKSIQFAILTGGEDTAYKMLEANPTLALSAE
TGGKNATIVSKMADRDQAIKNVIHSAFSNSGQKCSATSLLVLEKEVYEDENFKKTLID
ATLSLSVGDPFDFKNKIGTLADKPNEKVVKAMDELKSYENYEIPASFVDDNPYLMKPS
IKYGTKKGDFTHQTELFTPILSVMKAQNLDEAIEIVNSTGYGLTSALESLDEREWEYY
LERIEAGNIYINKPTTGAIVLRQPFGGIKKSAVGFGRKVGIFNYITQFVNIYQEEEDE
NALKNPLSEALEGLIQKGYDEHTHELKCAIFMAKSYAYHYKHEFSQAKDYVKIRGEDN
LFSYTKVKSVGYRITEKDTLSDMLGVALACLISQIPLTISAENERANKDLTFFLECLK
TLQANTPIVYESLQKFSEKLHAFNRIRYLKSDLDLLHKQASSLGMVLATAKPCLNGRF
ELLYYHLERSVSISYHRYGNLGSRVLRQPTCHKSCCAEK"
misc_feature complement(58189..59214)
/locus_tag="hp2018_0060"
/note="Proline dehydrogenase; Region: Pro_dh; pfam01619"
/db_xref="CDD:201891"
misc_feature complement(56533..58056)
/locus_tag="hp2018_0060"
/note="Delta(1)-pyrroline-5-carboxylate dehydrogenase,
PutA; Region: ALDH_PutA-P5CDH; cd07125"
/db_xref="CDD:143443"
misc_feature complement(56578..57927)
/locus_tag="hp2018_0060"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature complement(order(56656..56658,56701..56703,57148..57159,
57253..57255,57538..57543,57652..57654))
/locus_tag="hp2018_0060"
/note="Glutamate binding site [chemical binding]; other
site"
/db_xref="CDD:143443"
misc_feature complement(order(57301..57303,57310..57312,57319..57321,
57373..57375,57463..57468,57472..57474,57550..57555))
/locus_tag="hp2018_0060"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:143443"
misc_feature complement(order(57151..57153,57160..57162,57253..57255,
57541..57543))
/locus_tag="hp2018_0060"
/note="catalytic residues [active]"
/db_xref="CDD:143443"
gene 59793..60002
/locus_tag="hp2018_0061"
/db_xref="GeneID:12371239"
CDS 59793..60002
/locus_tag="hp2018_0061"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790870.1"
/db_xref="GI:385230951"
/db_xref="GeneID:12371239"
/translation="MKTIKNGIMIGTLGALLLSGCSSFDAQRFACLPKDHSSKDASTK
KEAQYMPKGFFDPYSSNLNHWDSTF"
gene 60115..60441
/locus_tag="hp2018_0062"
/db_xref="GeneID:12371240"
CDS 60115..60441
/locus_tag="hp2018_0062"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790871.1"
/db_xref="GI:385230952"
/db_xref="GeneID:12371240"
/translation="MSDTHIVENANNEKIEKPNTSNPTASTPPNNEELLKSITDLKDR
LKKLDDKLEDLEPFIKISRFIGHWFGNPSNDAQENPKDAQKSTNFHEKCTKPTETTEL
VEKIKI"
gene 60639..61004
/locus_tag="hp2018_0063"
/db_xref="GeneID:12371241"
CDS 60639..61004
/locus_tag="hp2018_0063"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790872.1"
/db_xref="GI:385230953"
/db_xref="GeneID:12371241"
/translation="MEVKDRLNFGFVEKTHSAMDLIASVLSDSKYYLESLYNKASQEL
SDKRSDKGEKLAELFDSLFEYIKDSKFERLKEPSAYDYSCKTLYPEQNTSQKMRRVVL
RGYMYDKKITCYTIVDMGS"
misc_feature <60666..>60971
/locus_tag="hp2018_0063"
/note="bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed; Region: PRK09603"
/db_xref="CDD:181983"
gene 61005..61673
/locus_tag="hp2018_0064"
/db_xref="GeneID:12371242"
CDS 61005..61673
/locus_tag="hp2018_0064"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790873.1"
/db_xref="GI:385230954"
/db_xref="GeneID:12371242"
/translation="MGTLIEKWFGFSQIREELEARIGELEDENTELFTTKDKLTKENT
ELASQNTALTEKNKTLTTENDKLNHQVIALTNEQNSLEQERAELQDEHGFLEKSCANL
EKENQRLTDKLKQLESAQKNLENSNTQLRQALENSNAQLAQAEEKIAEEKTELEREIA
RLKSLEGMEAKSDLDLANRRLASANQDLKRQKRKLEEENIALKERVDSLKEQLFTLQP
QKPQ"
misc_feature <61113..61400
/locus_tag="hp2018_0064"
/note="SH3 domain protein; Region: SH3_and_anchor;
TIGR04211"
/db_xref="CDD:211934"
gene 61684..62601
/locus_tag="hp2018_00651"
/db_xref="GeneID:12371243"
CDS 61684..62601
/locus_tag="hp2018_00651"
/codon_start=1
/transl_table=11
/product="Dihydrolipoamide acetyltransferase"
/protein_id="YP_005790874.1"
/db_xref="GI:385230955"
/db_xref="GeneID:12371243"
/translation="MVKPLQSLELPLGHPLVEKLCDRSLKDGVKFNEKSEPNFKKEVS
EEDKIKFNKALRVLHAIENNSTSLKYPSDDNQTDENQKFIEDLAQAKKIANKQIEKTL
EIVSYSDVDVDFEKFKDLMLNVDSVAVGLKIYSQSQLLDLDGGHWDLEAPSTPKERVT
FRFDNLPKDEHNKEMDFYARSSLKDLNKGVVAIDFGTKSTTASYMDKNGEYRLLSIGG
LVDDASLTKFENPTIMEFKHRGKFITEYDELDHRPFTEKNDIEVVHEAQKNASGVKGN
DLYRFFSKLKQWAGADEKQNFRDLIEDFL"
gene 62676..63422
/locus_tag="hp2018_00652"
/db_xref="GeneID:12371244"
CDS 62676..63422
/locus_tag="hp2018_00652"
/codon_start=1
/transl_table=11
/product="Dihydrolipoamide acetyltransferase"
/protein_id="YP_005790875.1"
/db_xref="GI:385230956"
/db_xref="GeneID:12371244"
/translation="MHNGVFLKYFLSYPIKYEKHQAEKIRESFERGLKKSLPRHVFDD
EKTAKTFKVELRASEPCAYAISALKSYGFFKSEKLDKPVYYGVFDFGGGTTDFDFGKW
EKSASPKFAYKMTHFSSGGDKYLGGENLLEWLAWEAYAKNFQELKAKDVVIAKPNYDR
IDTQRFGSFMQNSSGARLNLQTIASQLRPFLENLDANIIEAIEENENFEIKGFEKDFK
AQLFDRNGVETECDLKVDCKELLSLLKGKI"
gene 63462..64058
/locus_tag="hp2018_00653"
/db_xref="GeneID:12371245"
CDS 63462..64058
/locus_tag="hp2018_00653"
/codon_start=1
/transl_table=11
/product="Dihydrolipoamide acetyltransferase"
/protein_id="YP_005790876.1"
/db_xref="GI:385230957"
/db_xref="GeneID:12371245"
/translation="MAENIDDQCRAFHIFLGGNASRSVLVKQAFENAKEKQLKDYQQK
TSKNDFKFIIYEPLGTEKSDKQILELTGEDISNTPAYLKPTCKTGVVFGLLESRDKAK
GIEMPSIDSNPVFKYDLGIEIEGKFHAKIHRDSLKPNEYQIFQTKEEWGGFDELEIRY
SDKSLANTNTLDIKDTQLISMALEEVEEVDVKVCCVDS"
gene 64121..64690
/locus_tag="hp2018_0066"
/db_xref="GeneID:12371246"
CDS 64121..64690
/locus_tag="hp2018_0066"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790877.1"
/db_xref="GI:385230958"
/db_xref="GeneID:12371246"
/translation="MMTKNAYAFVVIEKSIMVFKCAKDKGLIPITEGFAPLKEGFLRS
FKERCNVEFLENLDLLFLYDYQFPSEVFSLCKDLKNSIWDRKLVVALVEALEGFKGLN
LSLKIEDRHSNSLGNGVQKLLTNADLGSNHKPIVIDSMKTYHQSQQEKYKRERGETLE
VRPTTPPSYGGGSIRISGDKKPDSNEENF"
gene 64706..64966
/locus_tag="hp2018_0067"
/note="hypothetical protein"
/pseudo
/db_xref="GeneID:12371247"
gene 65016..65867
/locus_tag="hp2018_0068"
/db_xref="GeneID:12371248"
CDS 65016..65867
/locus_tag="hp2018_0068"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790878.1"
/db_xref="GI:385230959"
/db_xref="GeneID:12371248"
/translation="MLEDAGNLNKPYKKDKCGGFIKDLDSYALKIIVERRKTEMQLEK
AIGELKKAKSNEDDAKVALRVLQGASALSWIWPPARIAATAAIVAAEAVLKFMKALEG
FTEKIKEAPNDSNAINEAFDNLERELEIATGNLSQKIDPVLERNENYAQKALEYREFL
ESRKEGFIVDEKNPYPEEVRFNEWRLAEFDSVFSAIVPLEDLNKTACAHHALKALQAA
LKDNDLGFDAAELEQIAKGFIPRGYLWHFDANVLGNLALVREELLLGVKHTKGYSLWT
EFLQKQN"
misc_feature 65718..65849
/locus_tag="hp2018_0068"
/note="A nuclease of the HNH/ENDO VII superfamily with
conserved WHH; Region: WHH; pfam14414"
/db_xref="CDD:206581"
gene 65837..66181
/locus_tag="hp2018_0069"
/db_xref="GeneID:12371249"
CDS 65837..66181
/locus_tag="hp2018_0069"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790879.1"
/db_xref="GI:385230960"
/db_xref="GeneID:12371249"
/translation="MDRISTETELNWEFVEPLNENALSDLEERLKIGFSDAFKDFIKR
SNYGFSQLRYFMVGNESYMFKHVLNFNLEGLLIDFMQSLKEWLEPEEIVFANDGYGGI
IFGIPPLMWCCF"
misc_feature 65891..>66148
/locus_tag="hp2018_0069"
/note="SMI1 / KNR4 family (SUKH-1); Region: SMI1_KNR4;
pfam09346"
/db_xref="CDD:204205"
gene 66257..66604
/locus_tag="hp2018_0070"
/db_xref="GeneID:12371250"
CDS 66257..66604
/locus_tag="hp2018_0070"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790880.1"
/db_xref="GI:385230961"
/db_xref="GeneID:12371250"
/translation="MFSHKVFLEGCTNELRRICDYFVEEAMQDDLGQKLKNEALEEML
KIAHDLENLEQETQYEMRKINEQLEEAKYLEKQIHMNFHSPSEIDRLMREAKEHEREA
KRRYDEYLKDKND"
gene 66597..67211
/gene="ftsK1"
/locus_tag="hp2018_0071"
/db_xref="GeneID:12371251"
CDS 66597..67211
/gene="ftsK1"
/locus_tag="hp2018_0071"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="YP_005790881.1"
/db_xref="GI:385230962"
/db_xref="GeneID:12371251"
/translation="MIDAGNLLKELDDALDKVVAKKEPESFLKPIVSQIEDYQKSIRQ
IQVQFTDVPKFNETSVYPKFLSCGLLEIKGKNGANMEFLLPKVYPFPPKSLYIEHEKD
GQFLREMLMRLLSSAPLVQLEVVLVDALSLGGIFNLARRLLDKDNDFIYQQRILTESK
EIEEALKHLYEYLKVNLQEKLAGFRDFAHYNEEKEDRLPLKAFF"
gene 67249..69021
/gene="ftsK"
/locus_tag="hp2018_0072"
/db_xref="GeneID:12371252"
CDS 67249..69021
/gene="ftsK"
/locus_tag="hp2018_0072"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="YP_005790882.1"
/db_xref="GI:385230963"
/db_xref="GeneID:12371252"
/translation="MEKVMRFGSKNGVLSFVNLESEKNNQSAEYLKNDAEFFRDTTSF
ERLKYLNVEVINDHGIQSQHMQDFADKIKAYYKQKKEVKRELKDLQRDKEFWTKSSQH
EVVVPVGWDINHKEVCFEIGNEQNHTLICDHSGSGKSNFLHVLIQNLAFYYAPNEVQL
FLLDYKEGVEFNAYVADPPLEHARLVSVASSISYGITFLKWLCDEIQKRADRFKQFNV
KDLNNYRKHDEMPRLIVVVDEFQVLFSNNKSTKAVEGHLNTPLKKGRSYGVHLVLATQ
TMRGTDINPSFKAQIANRIALPMDAEDSSSVLGDDAACEIQKPEGIFNNNRGNKKYHT
KMSIPKAPDDFKSFLTKIHAEFNQRNLAPIDRKIYNGETALKMPNTLKANEMRLHLGK
TVDYEQKDLIVEFENNESHLLVVSQDLNARIALMKLLFQNIKSANKELVFCNKEKRLI
RSFDAQKEYGITPVENILSVLDTAMNPNSVLVIDNLNEAKELHDKVGAEKLKSFLEKA
IDNEQYCVIFAHDFRQIKTNYHFDKLKDLLNNHFKQCLAFRCNGENLNAIKSDLPSPS
RLNALLIGISKDSVTEFRPFSLQD"
misc_feature <67282..69015
/gene="ftsK"
/locus_tag="hp2018_0072"
/note="DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning];
Region: FtsK; COG1674"
/db_xref="CDD:31860"
misc_feature 67501..68076
/gene="ftsK"
/locus_tag="hp2018_0072"
/note="FtsK/SpoIIIE family; Region: FtsK_SpoIIIE;
pfam01580"
/db_xref="CDD:190044"
gene complement(69103..69900)
/gene="ureD"
/locus_tag="hp2018_0073"
/db_xref="GeneID:12371253"
CDS complement(69103..69900)
/gene="ureD"
/locus_tag="hp2018_0073"
/codon_start=1
/transl_table=11
/product="Urease accessory protein"
/protein_id="YP_005790883.1"
/db_xref="GI:385230964"
/db_xref="GeneID:12371253"
/translation="MNTYAQESKLRLKTKIGADGRCVIEDNFFTPPFKLMAPFYPKDD
LAEIMLLAVSPGLMKGDAQDMQLHIGQNCKLRITSQSFEKIHNTEDGFASRDMHIVVG
ENAFLDFAPFPLIPFENAHFKGNTTISLHSGSQLLYSEIIVAGRVARNELFQFNRLHT
KISILQDEKPIYYDNTILDPKTTDMANMCMFDGYTHYLNLVLVNCPIELSGVRGLIEE
SEGVDGAVSEIASSHLCLKALAKGSELLLHLREKIARLVTQTTTQKV"
misc_feature complement(69115..69900)
/gene="ureD"
/locus_tag="hp2018_0073"
/note="Urease accessory protein UreH [Posttranslational
modification, protein turnover, chaperones]; Region: UreH;
COG0829"
/db_xref="CDD:31171"
gene complement(69900..70499)
/gene="ureG"
/locus_tag="hp2018_0074"
/db_xref="GeneID:12371254"
CDS complement(69900..70499)
/gene="ureG"
/locus_tag="hp2018_0074"
/codon_start=1
/transl_table=11
/product="Urease accessory protein"
/protein_id="YP_005790884.1"
/db_xref="GI:385230965"
/db_xref="GeneID:12371254"
/translation="MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDA
EFMCKNSVMPRERIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGD
NLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVGADLKVM
ERDSKKMRGEKPFIFTNIRAKEGLDDVIAWIKRNALLED"
misc_feature complement(69927..70487)
/gene="ureG"
/locus_tag="hp2018_0074"
/note="Rat sarcoma (Ras)-like superfamily of small
guanosine triphosphatases (GTPases); Region:
Ras_like_GTPase; cd00882"
/db_xref="CDD:206648"
misc_feature complement(70455..70478)
/gene="ureG"
/locus_tag="hp2018_0074"
/note="G1 box; other site"
/db_xref="CDD:206648"
misc_feature complement(order(69963..69971,70056..70058,70062..70067,
70305..70307,70452..70472))
/gene="ureG"
/locus_tag="hp2018_0074"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206648"
misc_feature complement(70377..70379)
/gene="ureG"
/locus_tag="hp2018_0074"
/note="G2 box; other site"
/db_xref="CDD:206648"
misc_feature complement(70359..70367)
/gene="ureG"
/locus_tag="hp2018_0074"
/note="Switch I region; other site"
/db_xref="CDD:206648"
misc_feature complement(70305..70316)
/gene="ureG"
/locus_tag="hp2018_0074"
/note="G3 box; other site"
/db_xref="CDD:206648"
misc_feature complement(order(70218..70223,70305..70310))
/gene="ureG"
/locus_tag="hp2018_0074"
/note="Switch II region; other site"
/db_xref="CDD:206648"
misc_feature complement(70056..70067)
/gene="ureG"
/locus_tag="hp2018_0074"
/note="G4 box; other site"
/db_xref="CDD:206648"
misc_feature complement(69963..69971)
/gene="ureG"
/locus_tag="hp2018_0074"
/note="G5 box; other site"
/db_xref="CDD:206648"
misc_feature complement(70528..71297)
/note="potential frameshift: common BLAST hit:
gi|15611135|ref|NP_222786.1| urease accessory protein"
gene complement(70528..70866)
/gene="ureF"
/locus_tag="hp2018_00751"
/db_xref="GeneID:12371255"
CDS complement(70528..70866)
/gene="ureF"
/locus_tag="hp2018_00751"
/codon_start=1
/transl_table=11
/product="Urease accessory protein"
/protein_id="YP_005790885.1"
/db_xref="GI:385230966"
/db_xref="GeneID:12371255"
/translation="MGAFFNAYAQTTKDPTHATSYGVFTASLNMELKKALRHYLYAQT
SNMVINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESHLCAASVQNDIKAMQH
ESLYSRLYMS"
misc_feature complement(70651..>70860)
/gene="ureF"
/locus_tag="hp2018_00751"
/note="UreF; Region: UreF; pfam01730"
/db_xref="CDD:201941"
gene complement(70869..71297)
/locus_tag="hp2018_00752"
/db_xref="GeneID:12371256"
CDS complement(70869..71297)
/locus_tag="hp2018_00752"
/codon_start=1
/transl_table=11
/product="Urease accessory protein"
/protein_id="YP_005790886.1"
/db_xref="GI:385230967"
/db_xref="GeneID:12371256"
/translation="MDKGKSVKSTKKSVGTPPKTPKTDNNANSHVDNEFLILQVNDAV
FPIGSYTHSFGLETYIQQKKVTNKESALEYLKANLSSQFLYTEMLSLKLTYESTLQQD
LKKILGIEEIIMLSTSPMELRLANQKLGNRFIKTLQAMTN"
misc_feature complement(<70875..71108)
/locus_tag="hp2018_00752"
/note="UreF; Region: UreF; pfam01730"
/db_xref="CDD:201941"
gene complement(71310..71822)
/gene="ureE"
/locus_tag="hp2018_0076"
/db_xref="GeneID:12371257"
CDS complement(71310..71822)
/gene="ureE"
/locus_tag="hp2018_0076"
/codon_start=1
/transl_table=11
/product="Urease accessory protein"
/protein_id="YP_005790887.1"
/db_xref="GI:385230968"
/db_xref="GeneID:12371257"
/translation="MIIERLVGNLRDLNPLDFNVDHVDLEWFETRKKIARFKTRQGKD
IAIRLKDAPKLGLSQGDILFKEEKEVIAVNILDSEVIHIQAKSVAEVAKICYEIGNRH
AALYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEPNFKVS
LASDFKVVVK"
misc_feature complement(71367..71822)
/gene="ureE"
/locus_tag="hp2018_0076"
/note="urease accessory protein UreE; Provisional; Region:
ureE; PRK13261"
/db_xref="CDD:183927"
misc_feature complement(71403..71822)
/gene="ureE"
/locus_tag="hp2018_0076"
/note="UreE urease accessory protein. UreE is a
metallochaperone assisting the insertion of a Ni2+ ion in
the active site of urease, an important step in the in
vivo assembly of urease, an enzyme that hydrolyses urea
into ammonia and carbamic acid. The...; Region: UreE;
cd00571"
/db_xref="CDD:29664"
misc_feature complement(order(71496..71498,71514..71519,71523..71528,
71532..71540))
/gene="ureE"
/locus_tag="hp2018_0076"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29664"
misc_feature complement(order(71466..71468,71517..71519))
/gene="ureE"
/locus_tag="hp2018_0076"
/note="catalytic residues [active]"
/db_xref="CDD:29664"
gene complement(71824..72411)
/gene="ureI"
/locus_tag="hp2018_0077"
/db_xref="GeneID:12371258"
CDS complement(71824..72411)
/gene="ureI"
/locus_tag="hp2018_0077"
/codon_start=1
/transl_table=11
/product="Urea transporter"
/protein_id="YP_005790888.1"
/db_xref="GI:385230969"
/db_xref="GeneID:12371258"
/translation="MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSIVCN
VVVITYSALHPTAPVEGAEDIVQVSHHLTSFYGPATGLLFGFTYLYAAINHTFGLDWR
PYSWYSLFVAINTVPAAILSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIEN
ILKIPLGKFTPWLAIIEGILTAWIPAWLLFIQHWV"
misc_feature complement(71830..72369)
/gene="ureI"
/locus_tag="hp2018_0077"
/note="AmiS/UreI family transporter; Region: AmiS_UreI;
pfam02293"
/db_xref="CDD:216963"
gene complement(72634..74343)
/gene="ureA"
/locus_tag="hp2018_0078"
/db_xref="GeneID:12371259"
CDS complement(72634..74343)
/gene="ureA"
/locus_tag="hp2018_0078"
/EC_number="3.5.1.5"
/codon_start=1
/transl_table=11
/product="Urease alpha subunit"
/protein_id="YP_005790889.1"
/db_xref="GI:385230970"
/db_xref="GeneID:12371259"
/translation="MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELK
FGGGKTLREGMSQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNK
DMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGG
TGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGF
KIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTE
GAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQF
ADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKE
EKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMII
KGGFIALSQMGDANASIPTPQPVYYREMFAHHGKAKYDANITFVSQAAYDKGIKEELG
LERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLF
SIF"
misc_feature complement(72637..74340)
/gene="ureA"
/locus_tag="hp2018_0078"
/note="urease subunit beta; Provisional; Region: ureB;
PRK13985"
/db_xref="CDD:184438"
misc_feature complement(72640..74337)
/gene="ureA"
/locus_tag="hp2018_0078"
/note="Urease alpha-subunit; Urease is a nickel-dependent
metalloenzyme that catalyzes the hydrolysis of urea to
form ammonia and carbon dioxide. Nickel-dependent ureases
are found in bacteria, fungi and plants. Their primary
role is to allow the use of...; Region: Urease_alpha;
cd00375"
/db_xref="CDD:238221"
misc_feature complement(order(72640..72654,72916..72918,72931..72939,
72943..72960,73024..73026,73969..73971,74026..74040,
74179..74187,74194..74196,74212..74214,74218..74229,
74272..74274,74278..74280,74284..74289,74305..74307,
74326..74328,74332..74337))
/gene="ureA"
/locus_tag="hp2018_0078"
/note="subunit interactions [polypeptide binding]; other
site"
/db_xref="CDD:238221"
misc_feature complement(order(73246..73251,73258..73260,73378..73380,
73507..73509,73522..73524,73600..73602,73681..73683,
73687..73689,73837..73839,73930..73932,73936..73938))
/gene="ureA"
/locus_tag="hp2018_0078"
/note="active site"
/db_xref="CDD:238221"
misc_feature complement(73345..73395)
/gene="ureA"
/locus_tag="hp2018_0078"
/note="flap region; other site"
/db_xref="CDD:238221"
gene complement(74347..75063)
/gene="ureB"
/locus_tag="hp2018_0079"
/db_xref="GeneID:12371260"
CDS complement(74347..75063)
/gene="ureB"
/locus_tag="hp2018_0079"
/EC_number="3.5.1.5"
/codon_start=1
/transl_table=11
/product="Urease beta /gamma subunit"
/protein_id="YP_005790890.1"
/db_xref="GI:385230971"
/db_xref="GeneID:12371260"
/translation="MKLTPKELDKLMLHYAGELARKRKEKGIKLNYVEAVALISAHIM
EEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPIEA
NGKLVPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREK
TFGKRLDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVDRQADNESKKIALHRA
KERGFHGAKSDDHYVKTIKE"
misc_feature complement(74389..75063)
/gene="ureB"
/locus_tag="hp2018_0079"
/note="urease subunit alpha; Provisional; Region:
PRK13986"
/db_xref="CDD:184439"
misc_feature complement(74764..75054)
/gene="ureB"
/locus_tag="hp2018_0079"
/note="Urease gamma-subunit; Urease is a nickel-dependent
metalloenzyme that catalyzes the hydrolysis of urea to
form ammonia and carbon dioxide. Nickel-dependent ureases
are found in bacteria, archaea, fungi and plants. Their
primary role is to allow the use...; Region: Urease_gamma;
cd00390"
/db_xref="CDD:238229"
misc_feature complement(order(74812..74814,74818..74820,74833..74835,
74848..74850,74944..74946,74965..74973,74995..74997,
75007..75009,75034..75039))
/gene="ureB"
/locus_tag="hp2018_0079"
/note="alpha-gamma subunit interface [polypeptide
binding]; other site"
/db_xref="CDD:238229"
misc_feature complement(74848..74850)
/gene="ureB"
/locus_tag="hp2018_0079"
/note="beta-gamma subunit interface [polypeptide binding];
other site"
/db_xref="CDD:238229"
misc_feature complement(74455..74748)
/gene="ureB"
/locus_tag="hp2018_0079"
/note="Urease beta-subunit; Urease is a nickel-dependent
metalloenzyme that catalyzes the hydrolysis of urea to
form ammonia and carbon dioxide. Nickel-dependent ureases
are found in bacteria, archaea, fungi and plants. Their
primary role is to allow the use of...; Region:
Urease_beta; cd00407"
/db_xref="CDD:238238"
misc_feature complement(74746..74748)
/gene="ureB"
/locus_tag="hp2018_0079"
/note="gamma-beta subunit interface [polypeptide binding];
other site"
/db_xref="CDD:238238"
misc_feature complement(order(74470..74478,74482..74496,74551..74559,
74563..74565,74569..74571,74632..74634,74701..74718,
74722..74745))
/gene="ureB"
/locus_tag="hp2018_0079"
/note="alpha-beta subunit interface [polypeptide binding];
other site"
/db_xref="CDD:238238"
gene complement(75330..75406)
/locus_tag="hp2018_t06"
/db_xref="GeneID:12371261"
tRNA complement(75330..75406)
/locus_tag="hp2018_t06"
/product="tRNA-Val"
/db_xref="GeneID:12371261"
gene complement(75425..75898)
/gene="lspA"
/locus_tag="hp2018_0080"
/db_xref="GeneID:12371262"
CDS complement(75425..75898)
/gene="lspA"
/locus_tag="hp2018_0080"
/EC_number="3.4.23.36"
/codon_start=1
/transl_table=11
/product="lipoprotein signal peptidase"
/protein_id="YP_005790891.1"
/db_xref="GI:385230972"
/db_xref="GeneID:12371262"
/translation="MLNTTQQSLLVFIGVFFLIFGVDQAIKHAILEGFRYESLVIDIV
LVFNKGVAFSLLSFLEGGLKYLQILLILGLFIFLMRQKELFKNHAIEFGMVFGAGVSN
VLDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVGVLLLRQFFFKQKQNKIKA"
misc_feature complement(75479..75832)
/gene="lspA"
/locus_tag="hp2018_0080"
/note="lipoprotein signal peptidase; Reviewed; Region:
lspA; PRK00376"
/db_xref="CDD:178992"
gene complement(75892..77229)
/gene="glmM"
/locus_tag="hp2018_0081"
/db_xref="GeneID:12371263"
CDS complement(75892..77229)
/gene="glmM"
/locus_tag="hp2018_0081"
/EC_number="5.4.2.10"
/codon_start=1
/transl_table=11
/product="phosphoglucosamine mutase"
/protein_id="YP_005790892.1"
/db_xref="GI:385230973"
/db_xref="GeneID:12371263"
/translation="MKIFGTDGVRGKAGVKLTPMFVMRLGIAAGLYFKKHSKTNKILI
GKDTRKSGYMVENALVSALTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
FEDNGIKFFNSYGYKLKEEEERAIEEIFHDEELLHSSYKVGESVGSAKRIDDVIGRYI
AHLKHSFPKHLNLQNLRIVLDTANGAAYKVAPVVFSELGADVLVINDEPNGCNINEQC
GALHPNQLSQEVKKYRADLGFAFDGDADRLVVVDNLGNIVHGDKLLGVLGVYQKSKNA
LSSQAVVATSMSNLALKEYLKSQDLELKHCAIGDKFVSECMRLNKANFGGEQSGHIIF
SDYAKTGDGLVCALQVSALVLESKLVSSVALNPFELYPQSLVNLNIQKKPPLESLKGY
NALLKELDQLEIRHLIRYSGTENKLRILLEAKDEKLLESKMQELKEFFEGQLC"
misc_feature complement(75895..77229)
/gene="glmM"
/locus_tag="hp2018_0081"
/note="phosphoglucosamine mutase; Provisional; Region:
glmM; PRK14324"
/db_xref="CDD:184621"
misc_feature complement(75922..77223)
/gene="glmM"
/locus_tag="hp2018_0081"
/note="GlmM is a bacterial phosphoglucosamine mutase
(PNGM) that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in the
biosynthetic pathway of...; Region: GlmM; cd05802"
/db_xref="CDD:100095"
misc_feature complement(order(75976..75978,75991..75999,76003..76005,
76237..76239,76243..76245,76249..76251,76300..76308,
76369..76371,76489..76494,76498..76500,76504..76506,
76903..76905,76927..76935,77200..77202,77209..77211,
77215..77217))
/gene="glmM"
/locus_tag="hp2018_0081"
/note="active site"
/db_xref="CDD:100095"
misc_feature complement(order(75976..75978,75991..75999,76003..76005,
76237..76239,76243..76245,76249..76251,76300..76302,
76306..76308,76369..76371,76489..76491,76933..76935,
77209..77211))
/gene="glmM"
/locus_tag="hp2018_0081"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100095"
misc_feature complement(order(76492..76494,76498..76500,76504..76506,
76933..76935))
/gene="glmM"
/locus_tag="hp2018_0081"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100095"
gene 77319..77588
/locus_tag="hp2018_0082"
/db_xref="GeneID:12371264"
CDS 77319..77588
/locus_tag="hp2018_0082"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="YP_005790893.1"
/db_xref="GI:385230974"
/db_xref="GeneID:12371264"
/translation="MANHKSAEKRIRQTIKRTERNRFYKTKIKNIIKAVREAVAVNDV
AKAQERLKIANKELHKFVSKGILKKNTASRKVSRLNASVKKIALA"
misc_feature 77319..77579
/locus_tag="hp2018_0082"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene complement(77585..77722)
/locus_tag="hp2018_0083"
/db_xref="GeneID:12371265"
CDS complement(77585..77722)
/locus_tag="hp2018_0083"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790894.1"
/db_xref="GI:385230975"
/db_xref="GeneID:12371265"
/translation="MDMRDYLSIKRYIKRRNNSKNAKLKKKPNNKNPLLSLKKLKAPQ
N"
gene 77715..78773
/gene="prfA"
/locus_tag="hp2018_0084"
/db_xref="GeneID:12371266"
CDS 77715..78773
/gene="prfA"
/locus_tag="hp2018_0084"
/codon_start=1
/transl_table=11
/product="Peptide chain release factor 1"
/protein_id="YP_005790895.1"
/db_xref="GI:385230976"
/db_xref="GeneID:12371266"
/translation="MSILAEKLSSILRRYDELTALLSSAEVVSDIKRLTELSKEQSSI
EEISVASKEYLSVLEGIKENKELLEDKELSELAKEELKILEIQKSELETAIKQLLIPK
DPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKE
IIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPS
DLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARL
YEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSG
NLDEVINPLIAHAQSQFE"
misc_feature 77715..78764
/gene="prfA"
/locus_tag="hp2018_0084"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:179074"
misc_feature <77997..78245
/gene="prfA"
/locus_tag="hp2018_0084"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature 78330..78671
/gene="prfA"
/locus_tag="hp2018_0084"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene complement(78741..78860)
/locus_tag="hp2018_0085"
/db_xref="GeneID:12371267"
CDS complement(78741..78860)
/locus_tag="hp2018_0085"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790896.1"
/db_xref="GI:385230977"
/db_xref="GeneID:12371267"
/translation="MLGFLVVVGGYLKKCLSVLSLCFIVLVGVLFKLALSVSD"
gene 79187..79441
/locus_tag="hp2018_0086"
/db_xref="GeneID:12371268"
CDS 79187..79441
/locus_tag="hp2018_0086"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005790897.1"
/db_xref="GI:385230978"
/db_xref="GeneID:12371268"
/translation="MKKIFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTSGA
NNNTPINTSMFGNNQAAPAPQTQGASKPDTKVNPSAWMKK"
gene 79452..81101
/gene="omp3"
/locus_tag="hp2018_0087"
/db_xref="GeneID:12371269"
CDS 79452..81101
/gene="omp3"
/locus_tag="hp2018_0087"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_005790898.1"
/db_xref="GI:385230979"
/db_xref="GeneID:12371269"
/translation="MKKSFKKLGFVSLVASSVLLGSMNATDLETYAALQKPSHVFSNY
AKKSNKGSELSSDSLTQQQAQNTAQSDTTQATTLENTASSGTPDSSTLPTKETPPATS
GGTGGDKHTASSGTPPASSTPPAKKDETSGSGDKDQHTASGTGGTPSSSGGTGGDKHT
ASSGTPPASSTPPTPTPPTSGGNTITSQLTKDTTTVNNLKSVSVSAMNTTLSGVTQLS
QQTATISTLLNGSPNLGSVISNAQGLSSAFSALESAQNTLKGYLDSSSATIGQLTNGS
NAVVGALDKAINQVDMALADLATADTQKTQAVALVAASNSATTTTDAINFLNALKANL
TAQKDAFMSVHKNIQTAVAQAQATYTPSVINTNNYGQMYGVDAMAGYKWFFGKKKRFG
FRSYGYYSYNHANLSFVGSQLGIMEGASQVNNFTYGVGFDALYNFYESKEGYNTAGLF
LGFGLGGDSFIVQGESYLKSQMQICNNTAGCSASMNTSYFQMPVEFGFRSNFSKHSGI
EVGLKLPLFTNQFYKERGVDGSVDVFYKRNFSIYFNYMINF"
misc_feature 80643..81098
/gene="omp3"
/locus_tag="hp2018_0087"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 81155..81310
/locus_tag="hp2018_0088"
/db_xref="GeneID:12371270"
CDS 81155..81310
/locus_tag="hp2018_0088"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790899.1"
/db_xref="GI:385230980"
/db_xref="GeneID:12371270"
/translation="MFSFFIVFRGWGFRLLFERGFLKTKEAFKTEPFVLGFDFLLGLV
FKNHFDF"
gene 81355..83112
/locus_tag="hp2018_0089"
/db_xref="GeneID:12371271"
CDS 81355..83112
/locus_tag="hp2018_0089"
/codon_start=1
/transl_table=11
/product="dentin sialophosphoprotein preproprotein"
/protein_id="YP_005790900.1"
/db_xref="GI:385230981"
/db_xref="GeneID:12371271"
/translation="MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGG
YKSSTREWGASALNYINAANGDAKKFSALVEKMRFNSGILGNFRAHARLRQALKLQKN
LKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQ
SPYYRSNNYYNSYYNPYYGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQD
YLMLENYMYAIDQEEILDHDASINQLDTPTDDDRDDKDDKSSQPANLMSFYRDPKFSK
DIQTNRLNSALVNLDNSHMLKDNSLFHTKVMPTKSVDAITSQAKELNHLVGQIKEMKQ
DGASPSKIDSVVDKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLS
HSSDVVGNYLDGSLKIDGDDRDDLNDAINNPMQQPVQQTPINSMDNTHANDSKDQGGN
ALINPNSTTNDDHNDDHMDTNTTDTGNANDTPTDDKDAGGNNTGDTGDMNNTDTGNTD
TGNTDDMSNMNNGNGDTGNANDDMGNSNDMGDDMNNANDMNDDMGNSNDDMGDMGDMN
DDMGGDMGDMGDMGGDMGN"
gene complement(83152..83295)
/locus_tag="hp2018_0090"
/db_xref="GeneID:12371272"
CDS complement(83152..83295)
/locus_tag="hp2018_0090"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790901.1"
/db_xref="GI:385230982"
/db_xref="GeneID:12371272"
/translation="MVGFLKAFLGGASWGLKGYQSIPYPLKRMVFTTNKKHPLKFWLS
IFD"
misc_feature complement(83533..85544)
/note="potential frameshift: common BLAST hit:
gi|15611146|ref|NP_222797.1| methyl-accepting chemotaxis
protein (MCP)"
gene complement(83533..83808)
/locus_tag="hp2018_00911"
/db_xref="GeneID:12371273"
CDS complement(83533..83808)
/locus_tag="hp2018_00911"
/codon_start=1
/transl_table=11
/product="Methyl-accepting chemotaxis signal transduction
protein"
/protein_id="YP_005790902.1"
/db_xref="GI:385230983"
/db_xref="GeneID:12371273"
/translation="MADEVRKLAERTQKSLSEIEANINILVQSIADNAESIKMQNKGV
ENIHNSINALQQDVQDNLTIANHSLQVSTKIDGISQDILEDVSKKKF"
misc_feature complement(83557..>83805)
/locus_tag="hp2018_00911"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
gene complement(83793..85544)
/locus_tag="hp2018_00912"
/db_xref="GeneID:12371274"
CDS complement(83793..85544)
/locus_tag="hp2018_00912"
/codon_start=1
/transl_table=11
/product="Methyl-accepting chemotaxis signal transduction
protein"
/protein_id="YP_005790903.1"
/db_xref="GI:385230984"
/db_xref="GeneID:12371274"
/translation="MKSTKIGFKIVVMVCAVVIIISAIMGFIINHKVESVLQSQATEL
LQKKAQLVSFKIQGIMKRIFMGANTLERFLSDENGSINDTLKKRMLSEFLLANPHVLL
ISAIYTNNNERVITAMNIHSKIAYPNTTLNENMINQIHSLKSITRSDPYYKEVDGNKI
YGMDITFPLKDKNQNIIGALNFFLNIDAFYTDVIGQNKSNTFLMGKDGRLLINPNRGI
QDKILSAINPDKRVAKAVEYYNNNEAGTLSYHSLSGDTETFLAIQPFDFFEGKENNGN
HWRWAIGKYVNKSLVFQEATNTRYIIITTLILGVLVLALLVFIIISSLITKRISRVNN
TLNDFFNLLNNPKNNHAISLTPPSAYDEIGQMQASINENILKPKKNIQADNKAIQNSI
EVTNHVENGDFTQEIACVPKNKDLQALRNTINSIIQYFRNQIGANIETLNNALEHYKN
LDFTHHIQNPKANMEKALNTLGQEISSMLKASLGFANALNHESKDLKTCVDNLTKTAH
KQERSLKNTTQSLEEITNIITTIDSKSQEMISQGEDIKSVVDMVRDIADQTNLLLLLK
PQERASMAEALRWWLMK"
misc_feature complement(<83853..>84392)
/locus_tag="hp2018_00912"
/note="Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms]; Region:
Tar; COG0840"
/db_xref="CDD:31182"
misc_feature complement(<83853..84047)
/locus_tag="hp2018_00912"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
gene complement(85718..86107)
/locus_tag="hp2018_0092"
/db_xref="GeneID:12371275"
CDS complement(85718..86107)
/locus_tag="hp2018_0092"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="YP_005790904.1"
/db_xref="GI:385230985"
/db_xref="GeneID:12371275"
/translation="MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIK
MKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGL
LTRDSRVVERKKYGKRKARRSPQFSKR"
misc_feature complement(85721..86101)
/locus_tag="hp2018_0092"
/note="30S ribosomal protein S9; Reviewed; Region: rpsI;
PRK00132"
/db_xref="CDD:178888"
gene complement(86104..86529)
/locus_tag="hp2018_0093"
/db_xref="GeneID:12371276"
CDS complement(86104..86529)
/locus_tag="hp2018_0093"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L13"
/protein_id="YP_005790905.1"
/db_xref="GI:385230986"
/db_xref="GeneID:12371276"
/translation="MTKTAKVNDIVRDWVVLDAKDKVFGRLITEIAVLLRGKHRPFYT
PNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHL
AVRGMLPKTKLGKAMIKKLKVYRDDKHPHTAQTSKKDAK"
misc_feature complement(86149..86490)
/locus_tag="hp2018_0093"
/note="Ribosomal protein L13. Protein L13, a large
ribosomal subunit protein, is one of five proteins
required for an early folding intermediate of 23S rRNA in
the assembly of the large subunit. L13 is situated on the
bottom of the large subunit, near the...; Region:
Ribosomal_L13; cd00392"
/db_xref="CDD:238230"
misc_feature complement(order(86161..86166,86173..86175,86185..86187,
86191..86193,86197..86205,86209..86217,86221..86229,
86245..86250,86332..86334,86338..86340,86422..86424,
86434..86436,86443..86445,86452..86457,86461..86463))
/locus_tag="hp2018_0093"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238230"
misc_feature complement(86245..86247)
/locus_tag="hp2018_0093"
/note="L3 interface [polypeptide binding]; other site"
/db_xref="CDD:238230"
gene complement(86882..87070)
/locus_tag="hp2018_0094"
/db_xref="GeneID:12371277"
CDS complement(86882..87070)
/locus_tag="hp2018_0094"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790906.1"
/db_xref="GI:385230987"
/db_xref="GeneID:12371277"
/translation="MQKEQEAREIAKKAVQIVFFLGIVVVLLMMINLYMLINQINASA
QMSQQIKKIEERLNQGQK"
gene complement(87077..88423)
/locus_tag="hp2018_0095"
/db_xref="GeneID:12371278"
CDS complement(87077..88423)
/locus_tag="hp2018_0095"
/EC_number="1.1.5.4"
/codon_start=1
/transl_table=11
/product="Malate:quinone oxidoreductase"
/protein_id="YP_005790907.1"
/db_xref="GI:385230988"
/db_xref="GeneID:12371278"
/translation="MEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISS
SAKANSQTIHDGSIETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVG
DEECEFMKKRYESFKEIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYQKDW
STMNFAKLSENFVKEALKLKPNNQVFLNFKVKKIEKRDDTYALTSEDAEEVYAKFVLV
NAGSYALPLAQSMGYGLDLGCLPVAGSFYFVPNLLRGKVYTVQNPKLPFAAVHGDPDA
VIKGKTRIGPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYV
FKNMVFELPVIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEK
KICTHKGITFNMTPSPGATSCLQNALVDSQEIAAYLGESFELERFYKDLSPEELEN"
misc_feature complement(87080..88423)
/locus_tag="hp2018_0095"
/note="Predicted dehydrogenase [General function
prediction only]; Region: COG0579"
/db_xref="CDD:30924"
misc_feature complement(87101..88420)
/locus_tag="hp2018_0095"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:214164"
gene complement(88483..89853)
/locus_tag="hp2018_0096"
/db_xref="GeneID:12371279"
CDS complement(88483..89853)
/locus_tag="hp2018_0096"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790908.1"
/db_xref="GI:385230989"
/db_xref="GeneID:12371279"
/translation="MRYFLVVFLFLFVGCMKKDFTLKDLSLPQEASSYLASSQNGSHN
NSIDPQALRENLKESYLKAWYSPWLDAKVKSNKKEVFWILKEMNKSTGYGEDLKPNAK
AFNDELIKSMDIVHYPSAKIKAVVVRDSDVRAVPTNKPYYLSQKGYPFDRYQNSLIFQ
GTPVLITHFNTDKTYAHIQSSFVYGWIKVSDLAYMRDKDIELLTKIKNYVMPIKDKIP
LYTDYGDFYTDARVGELFALIPQSQKTPQNPPKKELKAYGFLRDSKGYATLQSVILNE
KDFFVFPKAFTSENMAYFIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSY
AQSRYANNYVDLSSMKAKEKEDYIIKNATPYGTLIYLKGHIMLYLGAYNHQAIVAHSI
WSVQTQKHFKTLSHKIGGVVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKDFIHKTS
SPLNAN"
misc_feature complement(89503..>89793)
/locus_tag="hp2018_0096"
/note="NLPC_P60 stabilising domain, N term; Region:
N_NLPC_P60; pfam12912"
/db_xref="CDD:205143"
misc_feature complement(89287..>89415)
/locus_tag="hp2018_0096"
/note="SH3 domain of the SH3b1 type; Region: SH3_6;
pfam12913"
/db_xref="CDD:205144"
misc_feature complement(89125..89265)
/locus_tag="hp2018_0096"
/note="SH3 domain of SH3b2 type; Region: SH3_7; pfam12914"
/db_xref="CDD:205145"
misc_feature complement(88606..>89007)
/locus_tag="hp2018_0096"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature complement(88546..88956)
/locus_tag="hp2018_0096"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene complement(89873..91918)
/gene="rpoD"
/locus_tag="hp2018_0097"
/db_xref="GeneID:12371280"
CDS complement(89873..91918)
/gene="rpoD"
/locus_tag="hp2018_0097"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor"
/protein_id="YP_005790909.1"
/db_xref="GI:385230990"
/db_xref="GeneID:12371280"
/translation="MKKKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKEGK
IKEVKAKESKVKEIAKEPVPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLA
QVKKIKELCQKYQKKLVSSSEYAKKLNAIDKIKNTEEKQKVLDEELEDGCDFLKEKDF
LEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYA
YKDALINRERRVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKVVSEKDKKRVE
KVQESFKALDKAKKEWLKALEAPIDEKEDELVRLLTLAYKRQTLKDRLYDLEPTSKLI
NELVKTMETTLKSGDGFEKELKRLEYKLPLFNDVLIANHKKILANITNMTKEDIIAQV
PEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKRGKLISDRAKNKMAKSN
LRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISR
AIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIK
VTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKA
VIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLRI"
misc_feature complement(89882..91702)
/gene="rpoD"
/locus_tag="hp2018_0097"
/note="RNA polymerase sigma factor RpoD; Validated;
Region: PRK05658"
/db_xref="CDD:180186"
misc_feature complement(91313..91420)
/gene="rpoD"
/locus_tag="hp2018_0097"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature complement(90371..90583)
/gene="rpoD"
/locus_tag="hp2018_0097"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(90113..90346)
/gene="rpoD"
/locus_tag="hp2018_0097"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature complement(89918..90097)
/gene="rpoD"
/locus_tag="hp2018_0097"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(89930..89932,89936..89941,89945..89953,
89957..89962,89966..89968,89996..90001,90032..90034,
90062..90064))
/gene="rpoD"
/locus_tag="hp2018_0097"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(92143..92835)
/locus_tag="hp2018_0098"
/db_xref="GeneID:12371281"
CDS complement(92143..92835)
/locus_tag="hp2018_0098"
/codon_start=1
/transl_table=11
/product="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase"
/protein_id="YP_005790910.1"
/db_xref="GI:385230991"
/db_xref="GeneID:12371281"
/translation="MQKIGILGAMREEITPILELFGVGFEEIPLGGNVFHKGVYHNKE
IVVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVAQKLVQHDV
DLSAFDHPLGFIPESAIFIETSESLNALAKKIANEQHIALKEGIIASGDQFVHSKERK
EFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEEAGMSFDEFLEKSAHT
SAKFLKSMVDEL"
misc_feature complement(92146..92829)
/locus_tag="hp2018_0098"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Validated; Region: PRK05584"
/db_xref="CDD:180148"
misc_feature complement(92164..92829)
/locus_tag="hp2018_0098"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Region: MTA/SAH-Nsdase; TIGR01704"
/db_xref="CDD:130765"
gene complement(92849..93778)
/locus_tag="hp2018_0099"
/db_xref="GeneID:12371282"
CDS complement(92849..93778)
/locus_tag="hp2018_0099"
/EC_number="2.3.1.39"
/codon_start=1
/transl_table=11
/product="Malonyl CoA-acyl carrier protein transacylase"
/protein_id="YP_005790911.1"
/db_xref="GI:385230992"
/db_xref="GeneID:12371282"
/translation="MQYALLFPGQGSQCIGMGKSFYESHTLAKELFERASNALKVDMK
KTLFEENDLLKESAYTQPAIYLVSYIAYQLLNKQANGGLKPVFALGHSLGEVSAVSLS
GALDFEKALKLTHQRGKMMQEACTNKDASMMVVLGVSEESLLSLCQRTKNVWCANFNG
GMQVVLAGVKDDLKALEPTLKEMGAKRVVFLEMSVASHCPFLEPMIFKFQELLEKSLK
DKFHFEIISNATNEAYHNKAKAVELLSLQLTQPVRYQDCVKSNNGRVDVFFELGCGSV
LKGLNKRLSNKPTISVGDNKGLDEAIEFLEEYV"
misc_feature complement(92870..93778)
/locus_tag="hp2018_0099"
/note="(acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism]; Region: FabD; COG0331"
/db_xref="CDD:30679"
misc_feature complement(92921..93778)
/locus_tag="hp2018_0099"
/note="malonyl CoA-acyl carrier protein transacylase;
Region: fabD; TIGR00128"
/db_xref="CDD:199994"
gene 93908..94000
/locus_tag="hp2018_t07"
/db_xref="GeneID:12371283"
tRNA 93908..94000
/locus_tag="hp2018_t07"
/product="tRNA-Ser"
/db_xref="GeneID:12371283"
gene 94219..95208
/locus_tag="hp2018_0100"
/db_xref="GeneID:12371284"
CDS 94219..95208
/locus_tag="hp2018_0100"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790912.1"
/db_xref="GI:385230993"
/db_xref="GeneID:12371284"
/translation="MTDKEIGKKVLEQAEKPLSVKEIWERACEMGLDKERDGTGKTPW
SSLGSALGRDEKQFYVARKEKGTHFYWLKSREREFPPQKTPDSKEEDDGQSECSDTAE
KQKTSLKEENLHELLVKFLNEDPNFKLLCKTIRHNECKKSTAGECKWNYPDIVGVYFP
YNKYFPYNRYKEETLEFLQHTGQKRHKLFSFELKIRINFSNLKESYFQAVSNSSWANE
GYLVVFEEIKDKVLGELRRLNQSFGIGVIKLESEISNSKILLPAKEREIDIPTLNMLI
EQSPKDFEPFMEKINKQIKTGLDTAVDMEKFFDPVLDDEAMRKHIEDKGIKAE"
misc_feature 94237..95166
/locus_tag="hp2018_0100"
/note="Protein of unknown function (DUF511); Region:
DUF511; pfam04373"
/db_xref="CDD:146817"
gene 95212..96057
/locus_tag="hp2018_0101"
/db_xref="GeneID:12371285"
CDS 95212..96057
/locus_tag="hp2018_0101"
/codon_start=1
/transl_table=11
/product="Type II DNA modification enzyme/methyl
transferase"
/protein_id="YP_005790913.1"
/db_xref="GI:385230994"
/db_xref="GeneID:12371285"
/translation="MGAPYLSYPIFKSTDRLFTLYQGDCNEVLPQFENAFDLIFADPP
YFLSNDGLSIQSGKIMSVNKGDWDKENGINDIDEFNYQWINNAKKALKNTGSLLISGT
YHNLFSLGRILQKLDFKILNLITWQKTNPPPNFTCRYLTHSAEQIIWARKSRKHKHVF
NYEILKKINNDKQMRDVWSFPAIAPWEKANGKHPTQKPLALLVRLLLMASDDNSLIGD
PFSGSSTTGIAANLLKREFIGIEKESGFIKISMNRKLELDARYQEIRSKIKDLNLISP
FFKPL"
misc_feature 95236..96027
/locus_tag="hp2018_0101"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature 95317..95967
/locus_tag="hp2018_0101"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(96054..96953)
/locus_tag="hp2018_0102"
/db_xref="GeneID:12371286"
CDS complement(96054..96953)
/locus_tag="hp2018_0102"
/codon_start=1
/transl_table=11
/product="putative alpha 1,2 fucosyl transferase"
/protein_id="YP_005790914.1"
/db_xref="GI:385230995"
/db_xref="GeneID:12371286"
/translation="MAFKVVQICGGLGNQMFQYAFAKSLQKHLNTPVLLDVTSFDWSN
RKMQLELFPIDLPYASEREITMAKMQHLPKLVRDALKRMGFDRVSQEIVFEYEPKLLK
PSRLTYFYGYFQDPRYFDAISPLIKQTFTLPPPPQNGNNKKKEEEYHRKLALILAAKN
SVFAHIRRGDYVGIGCQLGIDYQKKAVEYMAKRVPNMELFVFCEDLKFTQNLDLGYPF
MDMTTRDKEEEAYWDMLLMQSCKHGIIANSTYSWWAAYLINNPEKIIIGPKHWLFGYE
NILCKEWVKIESHFEIKSEKYNA"
misc_feature complement(96117..96947)
/locus_tag="hp2018_0102"
/note="Alpha-1,2-fucosyltransferase; Region:
Fut1_Fut2_like; cd11301"
/db_xref="CDD:211387"
misc_feature complement(96093..96938)
/locus_tag="hp2018_0102"
/note="Glycosyl transferase family 11; Region:
Glyco_transf_11; pfam01531"
/db_xref="CDD:110528"
misc_feature complement(order(96204..96212,96264..96266,96345..96353,
96453..96455,96459..96461,96912..96923))
/locus_tag="hp2018_0102"
/note="GDP-Fucose binding site [chemical binding]; other
site"
/db_xref="CDD:211387"
gene complement(97048..97578)
/locus_tag="hp2018_0103"
/db_xref="GeneID:12371287"
CDS complement(97048..97578)
/locus_tag="hp2018_0103"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790915.1"
/db_xref="GI:385230996"
/db_xref="GeneID:12371287"
/translation="MPKPKKNTLPCSLSVKMSYFMRLLIKWRTRSLSHKMMTLVQILS
ILALASKASEDLEEQLKKIKDYIYRTLNAKIASDVYDRVLILVNEYCANEELFDKESV
KISDLLIQDIQLYALVDEMLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQE
RLLEPSYASFSNKKFK"
gene 97651..98595
/locus_tag="hp2018_0104"
/db_xref="GeneID:12371288"
CDS 97651..98595
/locus_tag="hp2018_0104"
/codon_start=1
/transl_table=11
/product="putative keto-acid dehydrogenase"
/protein_id="YP_005790916.1"
/db_xref="GI:385230997"
/db_xref="GeneID:12371288"
/translation="MKTFKKGVILDAKSVGLKALEVLKEVADFDFYEVTLPNQIVERS
IEAEIMVLNKVVITREVLSQLPKLKLICITATGTDNVDIKSAKDLGIEVKNVSAYSTE
SVAQHTLACALSLLGRINDYDRYCKSGEYSQSDIFTHISGMKMGLIKGGQWGVIGLGN
IGKRVAKLAQAFGAKVVYYSPKDKKEEYERLSLEELLKTSGIISIHAPLNESTRDLIA
LKELQSLKEGAILINVGRGGIVNEKDLALILETKDLYYASDVFVKEPFEKDHAFLNPK
IQNKLLLTPHIAWAYSDSLKTLVEKTKENIQDFLASQK"
misc_feature 97663..98592
/locus_tag="hp2018_0104"
/note="2-hydroxyacid dehydrogenase; Provisional; Region:
PRK08410"
/db_xref="CDD:181414"
misc_feature 97975..98514
/locus_tag="hp2018_0104"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
gene complement(98773..99486)
/locus_tag="hp2018_0105"
/db_xref="GeneID:12371289"
CDS complement(98773..99486)
/locus_tag="hp2018_0105"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790917.1"
/db_xref="GI:385230998"
/db_xref="GeneID:12371289"
/translation="MRKIVLVAIALLISGCASYKITPEHVTSYNNGIQVMTSTQAKSK
VQLEIAQSKLKGLNESPLVLYVAAQVLEGKPVVFSRKAISVSINQTSLPVLSLRQVMK
SSFDFEGILQSFNISVPTAPIDNINMITPPMFYYGQGSFLAYNGMMYGGMGMYGPGFG
MMMMDDVEEQEVMQESRQALKILAINYLKKNTLNVENKAKGGFVVVDTKNLKTPGVVV
VKVFLEDEIHTFKIDISKM"
gene complement(99591..101051)
/gene="thrC"
/locus_tag="hp2018_0106"
/db_xref="GeneID:12371290"
CDS complement(99591..101051)
/gene="thrC"
/locus_tag="hp2018_0106"
/EC_number="4.2.3.1"
/codon_start=1
/transl_table=11
/product="Threonine synthase"
/protein_id="YP_005790918.1"
/db_xref="GI:385230999"
/db_xref="GeneID:12371290"
/translation="MPFVPTRSLKEKKIDFIEAILNPNAPKGGLYTLEYFETLEWQDC
LGMSYSELVEHVFELLNLEIPKNLLASALKRYENFDNPKNPAPIFALNERLFVQELYH
GPSLAFKDMALQPLASLFSNLAVGKNEKYLVLVSTSGDTGPATLEGLAGMPNVFVVCL
YPKDGTSLVQKLQMVTQGASNLKVFGVSGDFDDAQNALKNLLKDDDFNEVLKARQLKL
SVANSVNFGRIAFQIVYHIWGFLELYKKGAINSKEKITLAIPSGNFGNALGAFYAKKM
GLNIAKIKVVTNSNDVLREFIETGRYDLTKRSLKQTYSPAMDILKSSNVERALFSLFG
FERTLELMQALEEEKFYALKPKELALLQEHFSCASCSDEDCLKTIQEVYAEHRYLIDP
HTATALNASLKTHEKTLVSATASYEKFPRTTLLALNEQKKNDNDKAALETLKNSYNTP
DSQRLDDLFERGIKHQEVLKLNEIKSSILLWLENTH"
misc_feature complement(99720..101051)
/gene="thrC"
/locus_tag="hp2018_0106"
/note="Threonine synthase [Amino acid transport and
metabolism]; Region: ThrC; COG0498"
/db_xref="CDD:30844"
misc_feature complement(99624..101045)
/gene="thrC"
/locus_tag="hp2018_0106"
/note="Threonine synthase catalyzes the final step of
threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic phosphate
is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD
includes members from higher plants, cyanobacteria;
Region: Thr-synth_2; cd01560"
/db_xref="CDD:107203"
misc_feature complement(order(99813..99815,100263..100268,
100725..100727))
/gene="thrC"
/locus_tag="hp2018_0106"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107203"
misc_feature complement(100725..100727)
/gene="thrC"
/locus_tag="hp2018_0106"
/note="catalytic residue [active]"
/db_xref="CDD:107203"
gene 101246..103159
/gene="tlpA"
/locus_tag="hp2018_0107"
/db_xref="GeneID:12371291"
CDS 101246..103159
/gene="tlpA"
/locus_tag="hp2018_0107"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_005790919.1"
/db_xref="GI:385231000"
/db_xref="GeneID:12371291"
/translation="MSKGLSIGNKIILCVALIMIVCVSILGVSLNSRVKEILKESALH
SMQDSLHFKVKEVQGVLENTYTSIGIVKEMLPKDTKREIKIQLLKNFILANSHVAGVS
MFFKDREDLRLTLLRDNDTIKLMENPSLGNNPLVQKAMKNKEISKSLPYYRKMPNGAE
VYGVNILLPLFKENTQEVVGVLMIFFSIDSFSNEITKNRSDLFLIGVKGKVLLSANKS
LQDKSITEIYKSVPKATNEVMAILENGSKATLEYLDPFSHKENFLAVETFKMLGKTES
KDNLNWMIALIIEKDKVYEQVGSVRFVVVVASAIMVLALIIAITLLMRAIVSNRLEVV
SSTLSHFFKLLNNQAHSSDIKLVEARSNDELGRMQTAINKNILQTQKTMQEDRQAVQD
TIKVVSDVKAGNFAVRITAEPASPDLKELRDALNGIMDYLQESVGTHMPSIFKIFESY
SGLDFRGRIQNASGRVELVTNALGQEIQKMLETSSNFAKDLANDSANLKECVQNLEKA
SNSQHKSLMETSKTIENITTSIQGVSSQSEAMIEQGQDIKSIVEIIRDIADQTNSEIE
ANINILVQSISDTSESIKNQVKEVEEINASIEALRSVTEGNLKIASDSLEISQEIDKV
SNDILEDVNKKQF"
misc_feature 102236..103156
/gene="tlpA"
/locus_tag="hp2018_0107"
/note="Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms]; Region:
Tar; COG0840"
/db_xref="CDD:31182"
misc_feature 102707..103135
/gene="tlpA"
/locus_tag="hp2018_0107"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(102713..102718,102725..102730,102737..102739,
102746..102751,102755..102760,102767..102769,
102776..102781,102788..102790,102797..102802,
102809..102814,102821..102823,102830..102835,
102839..102844,102854..102856,102860..102865,
102872..102874,102881..102886,102893..102898,
102905..102907,102914..102916,102923..102928,
102935..102940,102947..102952,102989..102994,
103001..103003,103010..103015,103022..103024,
103031..103036,103037..103042,103049..103054,
103073..103075,103082..103087,103094..103096,
103103..103108,103112..103117,103124..103129,
103133..103135)
/gene="tlpA"
/locus_tag="hp2018_0107"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
gene 103159..104265
/locus_tag="hp2018_0108"
/db_xref="GeneID:12371292"
CDS 103159..104265
/locus_tag="hp2018_0108"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790920.1"
/db_xref="GI:385231001"
/db_xref="GeneID:12371292"
/translation="MLIHICCSVDNLYFLKKAKEAFVGEKIVGFFYNPNIHPYSEYLL
RLEDVKRTCEMLEIELLEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKA
FELGEERFTTTLLTSPKKDPNQLIAKGQHIAQRHNLEFVVFKNDNFEHFKSELDLNLQ
ALARENELYRQNYCGCQFALKIQKESQNRSPFELYSPLKRQILPASIEERTQVFRTLE
AAKKDANKPFLAQKTIATYRLLNGGVWLSKNSNPLNCCILARSKSKAKVRISDLRWVF
SQRLSALVGYSQRDETLFLTLEGLNTLMAKNYDTLKELNLNPLSYEEELSLRALVSGS
ESINPIIVLEERIEKTLFVEIKSVFQEEKVFYLL"
misc_feature 103159..>103368
/locus_tag="hp2018_0108"
/note="Adenine nucleotide alpha hydrolases superfamily
including N type ATP PPases and ATP sulphurylases. The
domain forms a apha/beta/apha fold which binds to
Adenosine group; Region: Alpha_ANH_like; cd01986"
/db_xref="CDD:73292"
misc_feature order(103168..103176,103180..103191,103249..103251,
103255..103257)
/locus_tag="hp2018_0108"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:73292"
gene 104483..105244
/locus_tag="hp2018_0109"
/db_xref="GeneID:12371293"
CDS 104483..105244
/locus_tag="hp2018_0109"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790921.1"
/db_xref="GI:385231002"
/db_xref="GeneID:12371293"
/translation="MKTLFSVYLFLSLNPLFLEAKEITWSQFLENFKNKNEDDKPKPL
IVDKNNEKQQILDKNQQILKRALEKSLKFFFIFGYNYSQATFSTSNQTLTLVANSIGF
NTATGLEHFLRNHPKVGFRIFSVYNYFHSVSLSQPQILMVQNYGGALDFSWIFVDKKT
YRFRSYLGIALEQGVLLVDTIKTGAITTIIPRTKKTFFQAPFRFGFIVDFIGYLSLQL
GIEMPLVRNVSYIYNNHQERFKPRFNANLSLIVSF"
misc_feature 104798..105172
/locus_tag="hp2018_0109"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(105216..106007)
/locus_tag="hp2018_0110"
/db_xref="GeneID:12371294"
CDS complement(105216..106007)
/locus_tag="hp2018_0110"
/codon_start=1
/transl_table=11
/product="Beta-1,3-galactosyltransferase
/Beta-1,4-galactosyltransferase"
/protein_id="YP_005790922.1"
/db_xref="GI:385231003"
/db_xref="GeneID:12371294"
/translation="MLKVSVITACFNSEKTIEDTILSVLHQTYKNIEYIIIDGASADS
TLGIIQKYQDQIACVVSEKDKGIYDAMNKGIRRASGDIIALLNSDDFYIDEFVIEKVV
HEFENKNCDSVYADLVFVKPNCLEKVVRYYESGEFNPKTLLYGVVPAHPTLFVKKAIH
ERYGLYKTDYKISADFEMIIRLFVVQKISFSYLKEALVVMRTGGVSTSGFKSLLLRNK
ENIRACQENGIQANVFSMLLKYPRKVMGLFKKGKGGAKTKRLKKD"
misc_feature complement(105228..105998)
/locus_tag="hp2018_0110"
/note="putative glycosyl transferase; Provisional; Region:
PRK10063"
/db_xref="CDD:182218"
misc_feature complement(105384..105995)
/locus_tag="hp2018_0110"
/note="WfgS and WfeV are involved in O-antigen
biosynthesis; Region: GT_2_WfgS_like; cd06433"
/db_xref="CDD:133055"
misc_feature complement(order(105477..105479,105483..105485,
105894..105896))
/locus_tag="hp2018_0110"
/note="metal-binding site"
/db_xref="CDD:133055"
gene complement(106038..107693)
/locus_tag="hp2018_0111"
/db_xref="GeneID:12371295"
CDS complement(106038..107693)
/locus_tag="hp2018_0111"
/codon_start=1
/transl_table=11
/product="Methyl-accepting chemotaxis protein"
/protein_id="YP_005790923.1"
/db_xref="GI:385231004"
/db_xref="GeneID:12371295"
/translation="MFVVLAALLGLGGLFIGFVKVMQKDVLAQLMEHLETGQYKKREK
TLAYMTKLLEQGIHGYYKNFDNATARKMALDYFKRINDDKGMIYMVVVDKNGVVLFDP
VNPKTVGQSGLGLQSVDGVYYVRGYLEAAKKGGGYTYYKMPKYDGGVPEKKFAYSHYD
EVSQMVIAATSYYTDINTENKAIKEGVNKVFNENTTKLFLWILTATIALVVLTLIYAK
LRIVKRIDELVLKINAFSHGDKDLRTKIDVGDRNDEISQVGRGVNLFVENARLIMEEI
KGISTSNKTSMDKLVQIAQETQKSMKDSSTTLNSVKNKATDVASMMNASIEQSQGLRK
RLIETQGLVKESKDAIGDLFSQIIESAHTEEELSSQVEQLSRNADDVKSILDIINDIA
DQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAGRTQKSLAEINSTIMVIVQEINA
VSSQMNLNSQKMERLSDMSKSVQETYEKMSSNLSSVVSDSNQSMDDYAKSGRQIEAMV
SDFVGVEKVASKTLADSSDILNIATHVSGTTMNLDKQVNLFKT"
misc_feature complement(107322..107579)
/locus_tag="hp2018_0111"
/note="Cache is an extracellular domain that is predicted
to have a role in small-molecule recognition in a wide
range of proteins; Region: Cache_2; smart01049"
/db_xref="CDD:198117"
misc_feature complement(106872..107036)
/locus_tag="hp2018_0111"
/note="HAMP (Histidine kinases, Adenylyl cyclases, Methyl
binding proteins, Phosphatases) domain; Region: HAMP;
smart00304"
/db_xref="CDD:197640"
misc_feature complement(order(106887..106892,106899..106904,
106908..106913,106920..106925,106929..106934,
106989..106991,106995..107000,107007..107012,
107016..107021,107028..107033))
/locus_tag="hp2018_0111"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(106044..106829)
/locus_tag="hp2018_0111"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(<106263..106730)
/locus_tag="hp2018_0111"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(106269..106274,106278..106283,
106290..106292,106299..106304,106320..106322,
106329..106334,106371..106376,106383..106388,
106392..106397,106404..106409,106416..106418,
106425..106430,106437..106439,106446..106448,
106458..106460,106479..106481,106488..106490,
106500..106502,106509..106514,106521..106523,
106530..106532,106539..106544,106551..106556,
106563..106565,106572..106577,106581..106583,
106593..106598,106602..106607,106614..106616,
106623..106628,106635..106640,106647..106649,
106656..106661,106668..106670,106677..106682,
106686..106691,106698..106700,106707..106709,
106710..106712))
/locus_tag="hp2018_0111"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(106413..106514)
/locus_tag="hp2018_0111"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 107792..107920
/locus_tag="hp2018_0112"
/db_xref="GeneID:12371296"
CDS 107792..107920
/locus_tag="hp2018_0112"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790924.1"
/db_xref="GI:385231005"
/db_xref="GeneID:12371296"
/translation="MHPPPPMRDAKRRKVKLKSGGLKTANKVKNQQSRIIEHPFLS"
gene complement(107953..109698)
/gene="cpdB"
/locus_tag="hp2018_0113"
/db_xref="GeneID:12371297"
CDS complement(107953..109698)
/gene="cpdB"
/locus_tag="hp2018_0113"
/EC_number="3.1.4.16"
/codon_start=1
/transl_table=11
/product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
/protein_id="YP_005790925.1"
/db_xref="GI:385231006"
/db_xref="GeneID:12371297"
/translation="MKKLILAVFFTLTLSISAKEVKIVFLETSDIHGRLFSYDYAVGE
QKPNNGLTRIATLIKKQRAENKNVVLIDSGDLLQGNSTELFNNEPIHPLVRAENDLKF
DIRVLGNHEFNFSKDFLEKNIKGFNGNVVNANIIKIADNKPFVKPYIIKKIDGVRVAV
VGFLVPHVPTWEASTPEHFAGLKFLDAEEALKKTLNELKGKYDILIGAFHLGREDEKG
GDGIPDLAKKFPQFDIIFAGHEHAVYNTKVGKVHTIEPGAYGAYLAKGVVVFDTKTKK
KTITTENLPTKDAPEDEELAKKYEYVDKKSKEYANEVVGEVTKTFIDRPDFITGEEKI
TTMPTAALQETPVIELINKVQKYYAKADVSAAALFNFGANLKKGPFKRKDVAYIYKFS
NTLIGVNITGENLLKYMEWSYKFYNQLQPGDLTISFNENVRGYNFDMFSGVKYQVDVT
KPAGQRIINPTINGKPIDLKAVYKLAINNYRFGTLSTTLKLVTDADRYYDSYDALQDN
GQIRDLIIKYITEKKGAKVTPELEHNWEIINYDFKNPLLERLAEKLKEGSIKIPTSKD
GRTLNVKSIKESEVE"
misc_feature complement(108196..109689)
/gene="cpdB"
/locus_tag="hp2018_0113"
/note="5'-nucleotidase/2',3'-cyclic phosphodiesterase and
related esterases [Nucleotide transport and metabolism];
Region: UshA; COG0737"
/db_xref="CDD:31080"
misc_feature complement(108886..109632)
/gene="cpdB"
/locus_tag="hp2018_0113"
/note="Escherichia coli CpdB and related proteins,
N-terminal metallophosphatase domain; Region: MPP_CpdB_N;
cd07410"
/db_xref="CDD:163653"
misc_feature complement(order(108976..108978,108982..108984,
109069..109071,109369..109374,109474..109476,
109603..109605,109609..109611))
/gene="cpdB"
/locus_tag="hp2018_0113"
/note="active site"
/db_xref="CDD:163653"
misc_feature complement(order(108976..108978,108982..108984,
109069..109071,109372..109374,109474..109476,
109603..109605,109609..109611))
/gene="cpdB"
/locus_tag="hp2018_0113"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163653"
misc_feature complement(108250..108699)
/gene="cpdB"
/locus_tag="hp2018_0113"
/note="5'-nucleotidase, C-terminal domain; Region:
5_nucleotid_C; pfam02872"
/db_xref="CDD:202440"
gene complement(109847..110305)
/gene="luxS"
/locus_tag="hp2018_0114"
/db_xref="GeneID:12371298"
CDS complement(109847..110305)
/gene="luxS"
/locus_tag="hp2018_0114"
/EC_number="4.4.1.21"
/codon_start=1
/transl_table=11
/product="S-ribosylhomocysteine lyase"
/protein_id="YP_005790926.1"
/db_xref="GI:385231007"
/db_xref="GeneID:12371298"
/translation="MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQP
NQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLE
KTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV"
misc_feature complement(109856..110305)
/gene="luxS"
/locus_tag="hp2018_0114"
/note="S-ribosylhomocysteinase; Provisional; Region:
PRK02260"
/db_xref="CDD:179399"
gene complement(110343..111479)
/locus_tag="hp2018_0115"
/db_xref="GeneID:12371299"
CDS complement(110343..111479)
/locus_tag="hp2018_0115"
/EC_number="4.4.1.1"
/codon_start=1
/transl_table=11
/product="cystathionine gamma-lyase"
/protein_id="YP_005790927.1"
/db_xref="GI:385231008"
/db_xref="GeneID:12371299"
/translation="MQTKLIHGGISEDATTGAVSVPIYQASTYRQDAIGRHKGYEYSR
SGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLLQSGDHVLLGDDVYGGTFRL
FNKVLVKNGLSCTIIDTSDISQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKD
HGLLTIVDNTFATPYCQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIA
FFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLP
THPNHELAKAQMRGFSGMLSFTLKNDSEAALFVESLKLFILGESLGGVESLVGIPALM
THACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKIS"
misc_feature complement(110349..111479)
/locus_tag="hp2018_0115"
/note="cystathionine gamma-synthase/cystathionine
beta-lyase; Validated; Region: PRK06176"
/db_xref="CDD:180443"
misc_feature complement(110355..111431)
/locus_tag="hp2018_0115"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature complement(order(110550..110552,110784..110789,
110793..110795,110823..110825,110874..110876,
110880..110882,110904..110906,111168..111170,
111177..111179,111192..111194,111258..111263,
111267..111272,111348..111350,111354..111356,
111387..111392,111396..111407))
/locus_tag="hp2018_0115"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature complement(order(110874..110876,110901..110906,
110910..110912,110976..110978,111063..111065,
111192..111194,111261..111269))
/locus_tag="hp2018_0115"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature complement(order(110901..110906,110910..110912,
110967..110969,110976..110978,111192..111194,
111261..111269))
/locus_tag="hp2018_0115"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature complement(110901..110903)
/locus_tag="hp2018_0115"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
STS 110871..111345
/standard_name="D10Bir17"
/db_xref="UniSTS:141482"
gene complement(111506..112423)
/locus_tag="hp2018_0116"
/db_xref="GeneID:12371300"
CDS complement(111506..112423)
/locus_tag="hp2018_0116"
/EC_number="4.2.1.22"
/codon_start=1
/transl_table=11
/product="Cystathionine beta-synthase"
/protein_id="YP_005790928.1"
/db_xref="GI:385231009"
/db_xref="GeneID:12371300"
/translation="MILTAMQDAIGRTPIFKFTRKDYPIPLKSAIYAKLEHLNPGGSV
KDRLGQYLIKEAFRTHKITSTTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSVE
KQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLA
PEIVKELGTNFTSFVAGIGSGGTFAGTAKYLKERIPNIRLIGVEPEGSILNGGEPGPH
EIEGIGVEFIPPFFANLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFAAALK
EVQRLPEGSQVLTIFPDMADRYLSKGIYS"
misc_feature complement(111521..112420)
/locus_tag="hp2018_0116"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:30381"
misc_feature complement(111524..112393)
/locus_tag="hp2018_0116"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature complement(order(111527..111529,111536..111538,
111566..111568,111638..111646,111650..111658,
111926..111931,112094..112099,112106..112111,
112118..112123,112169..112171,112178..112180,
112304..112306,112310..112312,112328..112330,
112373..112381))
/locus_tag="hp2018_0116"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature complement(order(111545..111550,111626..111628,
111758..111760,111875..111892,112199..112201,
112289..112291))
/locus_tag="hp2018_0116"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature complement(112289..112291)
/locus_tag="hp2018_0116"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene 112542..113119
/locus_tag="hp2018_0117"
/note="hypothetical protein"
/pseudo
/db_xref="GeneID:12371301"
gene complement(113103..113240)
/locus_tag="hp2018_0118"
/db_xref="GeneID:12371302"
CDS complement(113103..113240)
/locus_tag="hp2018_0118"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790929.1"
/db_xref="GI:385231010"
/db_xref="GeneID:12371302"
/translation="MIVIKRQLFKTYFKKRWWDFRKIPYERVPFWYGVISWELFLNGL
H"
gene complement(113375..115237)
/gene="dnaK"
/locus_tag="hp2018_0119"
/db_xref="GeneID:12371303"
CDS complement(113375..115237)
/gene="dnaK"
/locus_tag="hp2018_0119"
/codon_start=1
/transl_table=11
/product="Chaperone protein"
/protein_id="YP_005790930.1"
/db_xref="GI:385231011"
/db_xref="GeneID:12371303"
/translation="MGKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTD
KGEILVGESAKRQAVTNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAI
EISGKIYTPQEISAKILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIA
GLNVLRIINEPTSAALAYGLDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGD
AFLGGDDFDNRVIDFLAAEFKNETGIEIKNDVMALQRLKEAAENAKKELSSAMETEIN
LPFITADATGPKHLVKKLTRAKFESLTEDLVEETISKIESVIKDAGLTKNEISEVVMV
GGSTRIPKVQERVKAFINKELNKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLS
LGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGK
FDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLSDSEIEK
MVKDAELHKEEDARKKEVIEARNHADSLAHQTQKNLDEHKANLNENDANEIQNAINAL
KDCIKNDNATKAELEDKTKALAQAAQKLGEAMANKNNAEQPKKKDDDVIDAEVE"
misc_feature complement(113378..115237)
/gene="dnaK"
/locus_tag="hp2018_0119"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature complement(114122..115237)
/gene="dnaK"
/locus_tag="hp2018_0119"
/note="Nucleotide-binding domain of human HSPA9 and
similar proteins; Region: HSPA9-Ssq1-like_NBD; cd10234"
/db_xref="CDD:212676"
misc_feature complement(order(114221..114223,114227..114235,
114434..114436,114446..114448,114455..114457,
114569..114571,114647..114649,114653..114658,
114728..114730,115028..115030,115199..115210))
/gene="dnaK"
/locus_tag="hp2018_0119"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212676"
misc_feature complement(order(114401..114406,114410..114412,
114464..114466,114473..114478,114485..114487,
114845..114856,115058..115063,115067..115072,
115079..115081,115091..115093,115145..115147,
115154..115156))
/gene="dnaK"
/locus_tag="hp2018_0119"
/note="NEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212676"
misc_feature complement(order(114599..114610,114731..114733,
114737..114742,114785..114790,114794..114799))
/gene="dnaK"
/locus_tag="hp2018_0119"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212676"
gene complement(115267..115842)
/gene="grpE"
/locus_tag="hp2018_0120"
/db_xref="GeneID:12371304"
CDS complement(115267..115842)
/gene="grpE"
/locus_tag="hp2018_0120"
/codon_start=1
/transl_table=11
/product="24 kDa chaperone/ HSP-70 cofactor"
/protein_id="YP_005790931.1"
/db_xref="GI:385231012"
/db_xref="GeneID:12371304"
/translation="MKDEHNQEHDHLSPKEPESYQKACACKEQQGEEKQEASEKEGEI
KEDFELKYQEMREQYLRAHADFENVKKRLERDKNMALEYAYEKIALDLLPVIDALLGA
HKSALEVDKESALTKGLELTMEKLHEVLARHGIEGIECLEEFDPNFHNAIMQVKSEEK
ENGKIVQVLQQGYKYKGRVLRPAMVSIAKND"
misc_feature complement(115270..115842)
/gene="grpE"
/locus_tag="hp2018_0120"
/note="Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: GrpE; COG0576"
/db_xref="CDD:30921"
misc_feature complement(115282..115686)
/gene="grpE"
/locus_tag="hp2018_0120"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cd00446"
/db_xref="CDD:73207"
misc_feature complement(order(115444..115446,115477..115479,
115486..115488,115537..115539,115549..115551,
115570..115572,115579..115581,115591..115593,
115633..115638,115645..115647,115657..115659,
115666..115671,115678..115683))
/gene="grpE"
/locus_tag="hp2018_0120"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73207"
misc_feature complement(order(115297..115299,115309..115311,
115336..115338,115384..115398,115405..115407,
115630..115632))
/gene="grpE"
/locus_tag="hp2018_0120"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:73207"
gene complement(115842..116705)
/gene="hrcA"
/locus_tag="hp2018_0121"
/db_xref="GeneID:12371305"
CDS complement(115842..116705)
/gene="hrcA"
/locus_tag="hp2018_0121"
/codon_start=1
/transl_table=11
/product="Heat-inducible transcription repressor"
/protein_id="YP_005790932.1"
/db_xref="GI:385231013"
/db_xref="GeneID:12371305"
/translation="MRYNAIVLSSRMVIDEIFQIMMLRRIKVGSDLNKKESLLDAFVK
TYLQTLEPISSKRLKELANLKVSCATIRNYFQILSKEGMLHQAHSSGARLPTFKAFEN
YWQKSLRFEVLKVNEKRLKSASENFGLFTLLKKPSLERLERVIECEKRFLILDFLAFS
CAVGYSVKMEKFLLELVGRSVKEVRSIAASVNALSLARQLERLEYSSAQMTRFNLMGL
KTLLNSPLFFDILGGKVLERFKKGLHFIEPDCMLVTRPIEFQNEQAQLLCVGKLECDY
EGFFQTISEEE"
misc_feature complement(115851..116615)
/gene="hrcA"
/locus_tag="hp2018_0121"
/note="heat-inducible transcription repressor;
Provisional; Region: PRK03911"
/db_xref="CDD:179674"
gene 116892..117440
/locus_tag="hp2018_01221"
/db_xref="GeneID:12371306"
CDS 116892..117440
/locus_tag="hp2018_01221"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790933.1"
/db_xref="GI:385231014"
/db_xref="GeneID:12371306"
/translation="MNTHTRGIDSGLIHSLQSISLSMFRKGFFGLYQGSISARIGTNQ
FVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPP
YSLAYSLRHNRLLPRDYLGYRSLGEEIAIFNPKDYDSWQERADTEILRQLQESKKYFV
FIRGAGFLPTIGSFLNSWKFLI"
misc_feature 116910..117389
/locus_tag="hp2018_01221"
/note="hypothetical protein; Provisional; Region:
PRK05834"
/db_xref="CDD:180279"
misc_feature order(116955..116957,116979..116981,117048..117050,
117054..117059,117189..117191,117195..117200,
117213..117221)
/locus_tag="hp2018_01221"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29521"
misc_feature order(116994..116996,117039..117044,117120..117128,
117183..117185,117189..117191)
/locus_tag="hp2018_01221"
/note="active site"
/db_xref="CDD:29521"
misc_feature order(117183..117185,117189..117191)
/locus_tag="hp2018_01221"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:29521"
gene 117422..117520
/locus_tag="hp2018_01222"
/db_xref="GeneID:12371307"
CDS 117422..117520
/locus_tag="hp2018_01222"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790934.1"
/db_xref="GI:385231015"
/db_xref="GeneID:12371307"
/translation="MEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV"
misc_feature <117422..117484
/locus_tag="hp2018_01222"
/note="Class II Aldolase and Adducin head (N-terminal)
domain. Aldolases are ubiquitous enzymes catalyzing
central steps of carbohydrate metabolism. Based on
enzymatic mechanisms, this superfamily has been divided
into two distinct classes (Class I and II); Region:
Aldolase_II; cl00214"
/db_xref="CDD:206906"
gene 117541..117837
/locus_tag="hp2018_0123"
/db_xref="GeneID:12371308"
CDS 117541..117837
/locus_tag="hp2018_0123"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790935.1"
/db_xref="GI:385231016"
/db_xref="GeneID:12371308"
/translation="MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSSIQDG
FSQNNTQNAPDFDRLQALNAINNDGEIKDKSQVEKSLADDGNAPEIYSSLDTYA"
gene complement(117867..119753)
/locus_tag="hp2018_0124"
/db_xref="GeneID:12371309"
CDS complement(117867..119753)
/locus_tag="hp2018_0124"
/codon_start=1
/transl_table=11
/product="Motility accessory factor"
/protein_id="YP_005790936.1"
/db_xref="GI:385231017"
/db_xref="GeneID:12371309"
/translation="MMDIYQKNLQALFKKDPLLFAKLKAIKENKKYEVFLGNDSANFN
LLDKETNTPLFEKSPLDSSLELYKNSEIHMLYPYLYYFGLGNGVFYRLLLGNGNLKRL
VVIEPEIEVIFIVLNLLDFSTEILENRLILLHASFCNYNMIASLFDMDKKSRLYARMY
DLKLFNAYYERYSHQMIEINQHFTRALEHGAISVGNDAKDALIGIKQHAANLPEVIKS
PSLVDFVNALKNRDTAIIVSTGPSLNKQLPLLKEIAPYATLFCIDASFPILARAGIKP
DIVLSLERVDLTAKFYEETPLDFQEGVIFALTSIVHKRLIQAIKKGVKQFSFRPFGYT
NLFDLHQYGYVGIGMSAANMAYELVVHSRFKRCVFIGQDLSFSQSGNSHASGAIYGDR
EIKPKKDKDKIFIEKYGGNGEVETTLVWKLFLEFFEKDIFNTPYKLEVINATEGGARI
KGTKEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIAKQKCEEIIKYANEKKTQ
VEEAFLKVAEFLEEVEKLHEKNKLEELDFEELEHLSAEIDNVKELFDDKRFNSYFMDA
IQSYIFHQELHIAEIVCKKTNNEDGLRAKQLEYIYAHKYWLFSLAGGMDCVIEAIKMA
LKEW"
misc_feature complement(117888..119750)
/locus_tag="hp2018_0124"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2604"
/db_xref="CDD:32596"
gene complement(119811..121001)
/locus_tag="hp2018_01251"
/db_xref="GeneID:12371310"
CDS complement(119811..121001)
/locus_tag="hp2018_01251"
/codon_start=1
/transl_table=11
/product="Flagellin"
/protein_id="YP_005790937.1"
/db_xref="GI:385231018"
/db_xref="GeneID:12371310"
/translation="MLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIG
STSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSA
GTGIGALSEIINRFSNTLGVRASYNVMATGGTPVQSGTVRELTINGVEIGTVNDVHKN
DADGRLTNAINSVKDRTGVEASMDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAG
ISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANV
ASAAGANANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMEL
VTTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVL
RLLQ"
misc_feature complement(119814..>121001)
/locus_tag="hp2018_01251"
/note="flagellin B; Provisional; Region: PRK13588"
/db_xref="CDD:184167"
misc_feature complement(120609..120764)
/locus_tag="hp2018_01251"
/note="Flagellin hook IN motif; Region: Flagellin_IN;
pfam07196"
/db_xref="CDD:148666"
misc_feature complement(120417..120572)
/locus_tag="hp2018_01251"
/note="Flagellin hook IN motif; Region: Flagellin_IN;
pfam07196"
/db_xref="CDD:148666"
misc_feature complement(119859..120074)
/locus_tag="hp2018_01251"
/note="Bacterial flagellin C-terminal helical region;
Region: Flagellin_C; pfam00700"
/db_xref="CDD:144340"
gene complement(121037..121354)
/locus_tag="hp2018_01252"
/db_xref="GeneID:12371311"
CDS complement(121037..121354)
/locus_tag="hp2018_01252"
/codon_start=1
/transl_table=11
/product="Flagellin"
/protein_id="YP_005790938.1"
/db_xref="GI:385231019"
/db_xref="GeneID:12371311"
/translation="MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADD
SSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVKPLKT
GKL"
misc_feature complement(<121064..121342)
/locus_tag="hp2018_01252"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
gene 121521..123731
/gene="topA"
/locus_tag="hp2018_0126"
/db_xref="GeneID:12371312"
CDS 121521..123731
/gene="topA"
/locus_tag="hp2018_0126"
/EC_number="5.99.1.2"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase I"
/protein_id="YP_005790939.1"
/db_xref="GI:385231020"
/db_xref="GeneID:12371312"
/translation="MKHLIIVESPAKAKTIKNFLDKNYEVVASKGHVRDLSKFALGIK
IDETGFTPNYVVDKDHKELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKL
ESYPRIVFHEITQNAILNALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITK
GLSTGRVQSAALKLVVDREREIKAFKPLTYFTLDALFEPHLEAQLISYKGNKLKAQEL
IDGKKAQEIKNELEKESYIISSIVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMS
IAQKLYEGVTTPQGVMGVITYMRTDSLNIAKEALEEARAKILKDYGKDYLPPKAKVYS
SKNKNAQEAHEAIRPTSIILEPNALKDYLKPEELKLYTLIYKRFLASQMQDALFESQS
VVMACEKGEFKASGRKLLFDGYYKILGNDDKDKLLPNLKENDPIKLEKLESNAHVTEP
PARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVIEILE
KHFEEIVDSKFSTSLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQKVHE
KTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYVKQTETANNEATQELCEKCGGEMV
QKFSRNGAFLACNNYPECKNTKSLKNTPNAKETIEGVKCPECGGDIALKRSRKGSFYG
CNNYPKCNFLSNHKPINKRCEKCHYLMSERIYRKKKTHECIKCKERVFLEEDNG"
misc_feature 121521..123614
/gene="topA"
/locus_tag="hp2018_0126"
/note="DNA topoisomerase I; Validated; Region: PRK05582"
/db_xref="CDD:180146"
misc_feature 121524..121895
/gene="topA"
/locus_tag="hp2018_0126"
/note="TOPRIM_TopoIA_TopoI: The topoisomerase-primase
(TORPIM) domain found in members of the type IA family of
DNA topoisomerases (Topo IA) similar to Escherichia coli
DNA topoisomerase I. Type IA DNA topoisomerases remove
(relax) negative supercoils in the...; Region:
TOPRIM_TopoIA_TopoI; cd03363"
/db_xref="CDD:173783"
misc_feature order(121542..121547,121554..121556,121764..121766,
121770..121772,121776..121778)
/gene="topA"
/locus_tag="hp2018_0126"
/note="active site"
/db_xref="CDD:173783"
misc_feature order(121563..121565,121767..121769,121773..121775,
121794..121799,121803..121808)
/gene="topA"
/locus_tag="hp2018_0126"
/note="interdomain interaction site; other site"
/db_xref="CDD:173783"
misc_feature order(121764..121766,121770..121772)
/gene="topA"
/locus_tag="hp2018_0126"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173783"
misc_feature 121773..121775
/gene="topA"
/locus_tag="hp2018_0126"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173783"
misc_feature 121908..123176
/gene="topA"
/locus_tag="hp2018_0126"
/note="DNA Topoisomerase, subtype IA; DNA-binding,
ATP-binding and catalytic domain of bacterial DNA
topoisomerases I and III, and eukaryotic DNA topoisomerase
III and eubacterial and archael reverse gyrases.
Topoisomerases clevage single or double stranded DNA...;
Region: TOP1Ac; cd00186"
/db_xref="CDD:73184"
misc_feature order(121908..121991,122010..122066)
/gene="topA"
/locus_tag="hp2018_0126"
/note="domain I; other site"
/db_xref="CDD:73184"
misc_feature order(121935..121940,121947..121949,121959..121961,
121971..121973,122355..122357,122367..122369,
122415..122417,122934..122939,122946..122951,
122955..122957,122967..122972)
/gene="topA"
/locus_tag="hp2018_0126"
/note="DNA binding groove [nucleotide binding]"
/db_xref="CDD:73184"
misc_feature order(122037..122039,122049..122051,123042..123044)
/gene="topA"
/locus_tag="hp2018_0126"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:73184"
misc_feature order(122079..122102,122124..122168,122670..122714,
122718..122774,122835..122867)
/gene="topA"
/locus_tag="hp2018_0126"
/note="domain II; other site"
/db_xref="CDD:73184"
misc_feature order(122184..122204,122208..122237,122322..122372,
122397..122483,122547..122573,122607..122669)
/gene="topA"
/locus_tag="hp2018_0126"
/note="domain III; other site"
/db_xref="CDD:73184"
misc_feature order(122217..122219,122229..122237,122550..122552,
122625..122627,122634..122636,122646..122648,
122928..122930,122934..122936,123000..123002)
/gene="topA"
/locus_tag="hp2018_0126"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:73184"
misc_feature order(122409..122411,122415..122417,122550..122552)
/gene="topA"
/locus_tag="hp2018_0126"
/note="catalytic site [active]"
/db_xref="CDD:73184"
misc_feature order(122868..122990,123000..123044,123060..123176)
/gene="topA"
/locus_tag="hp2018_0126"
/note="domain IV; other site"
/db_xref="CDD:73184"
misc_feature 123225..123326
/gene="topA"
/locus_tag="hp2018_0126"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 123357..123470
/gene="topA"
/locus_tag="hp2018_0126"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 123498..123614
/gene="topA"
/locus_tag="hp2018_0126"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
gene 123724..124650
/locus_tag="hp2018_0127"
/db_xref="GeneID:12371313"
CDS 123724..124650
/locus_tag="hp2018_0127"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_005790940.1"
/db_xref="GI:385231021"
/db_xref="GeneID:12371313"
/translation="MAKENPPVVFGPVLSRRFGKSLGVDLSPSKKQCNYNCIYCELGK
AKPIERMEEVIKVETLINAIQNALNNLTTPIDVLTITANGEPTLYPHLLELIQSIKPF
LKGVKTLILSNGSLFYESKVQQALKEFDIVKFSLDAIDLKAFERVDKPYSKDINKILE
GILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQINTARVDLSTIDRPSSFKA
PKLSEDELLKCSLFFEGLCVSLPKRSITQAKKLVSCGIDELLALISRRPLSVEEAPLI
LEPSTFKHLETLLNHKQITIKKVGSLEFYCAF"
misc_feature 123724..124587
/locus_tag="hp2018_0127"
/note="Fe-S oxidoreductases [Energy production and
conversion]; Region: COG0731"
/db_xref="CDD:31075"
misc_feature 123814..124344
/locus_tag="hp2018_0127"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(123820..123822,123826..123828,123832..123834,
123838..123846,123964..123966,123973..123978,
124054..124062,124126..124128,124255..124257)
/locus_tag="hp2018_0127"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(124807..125001)
/locus_tag="hp2018_0128"
/db_xref="GeneID:12371314"
CDS complement(124807..125001)
/locus_tag="hp2018_0128"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790941.1"
/db_xref="GI:385231022"
/db_xref="GeneID:12371314"
/translation="MPHVACKKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLA
ACSAGDIDKQIELEQEKQKL"
misc_feature complement(<124813..125001)
/locus_tag="hp2018_0128"
/note="Helicobacter pylori protein of unknown function
(DUF874); Region: DUF874; pfam05917"
/db_xref="CDD:114629"
gene complement(125308..127746)
/gene="ppsA"
/locus_tag="hp2018_0129"
/db_xref="GeneID:12371315"
CDS complement(125308..127746)
/gene="ppsA"
/locus_tag="hp2018_0129"
/EC_number="2.7.9.2"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate synthase"
/protein_id="YP_005790942.1"
/db_xref="GI:385231023"
/db_xref="GeneID:12371315"
/translation="MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFA
ITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEI
FQAYEILSRQYDMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCL
ASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFIT
SAWGLGENVVGGTINPDEFYVFKPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRN
IKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDIEWAKDGDSGEIFIV
QARPETVQSQKSKEENQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHM
NSFKEGEILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGAT
DSLYTGMEITVSCAEGEEGYVYAGIYEHEIERVELSNMQETQTKIYINIGNPEKAFSF
SQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEKNEIENLMAGYANPKDFFV
KKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYY
SESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNG
LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDRDSELVSHVFDERNEAM
LKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVA
KLEKELKDHGLTVR"
misc_feature complement(125335..127746)
/gene="ppsA"
/locus_tag="hp2018_0129"
/note="phosphoenolpyruvate synthase; Validated; Region:
PRK06464"
/db_xref="CDD:180577"
misc_feature complement(126700..127680)
/gene="ppsA"
/locus_tag="hp2018_0129"
/note="Pyruvate phosphate dikinase, PEP/pyruvate binding
domain; Region: PPDK_N; pfam01326"
/db_xref="CDD:201730"
misc_feature complement(126364..126564)
/gene="ppsA"
/locus_tag="hp2018_0129"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature complement(125344..126276)
/gene="ppsA"
/locus_tag="hp2018_0129"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
gene 127929..128060
/locus_tag="hp2018_0130"
/db_xref="GeneID:12371316"
CDS 127929..128060
/locus_tag="hp2018_0130"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790943.1"
/db_xref="GI:385231024"
/db_xref="GeneID:12371316"
/translation="MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC"
gene 128100..129938
/gene="thrS"
/locus_tag="hp2018_0131"
/db_xref="GeneID:12371317"
CDS 128100..129938
/gene="thrS"
/locus_tag="hp2018_0131"
/EC_number="6.1.1.3"
/codon_start=1
/transl_table=11
/product="Threonyl-tRNA synthetase"
/protein_id="YP_005790944.1"
/db_xref="GI:385231025"
/db_xref="GeneID:12371317"
/translation="MSAELIAVYKDEQIIDLESAKVLGLSDGIKALKGSEPIFFDDSP
LALEVIRHSCAHLLAQSLKALYPDAKFFVGPVVEEGFYYDFKTSSKISEEDLPKIEAK
MKEFAKLKLAIAKEILTREQALERFKGDELKHAVMSKISGDIFGVYKQGEFEDLCKGP
HLPNTRFLNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKRD
HRKLGVELGLFSFDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILK
SDVWKISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEY
GVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMKAFDFSYE
MELSTRPAKSIGDDEVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALK
RKWQCGTIQVDMNLPERFKLAFTNERNHAEQPVMIHRAILGSFERFIAILSEHFGGNF
PFFVAPTQIALIPINEEHHVFALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIP
MILVLGNEEVETEILSIRDREKQAQYKMPLKEFLNMVESKMQEVSF"
misc_feature 128223..129935
/gene="thrS"
/locus_tag="hp2018_0131"
/note="threonyl-tRNA synthetase; Reviewed; Region: thrS;
PRK12305"
/db_xref="CDD:183422"
misc_feature 128538..128681
/gene="thrS"
/locus_tag="hp2018_0131"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; pfam07973"
/db_xref="CDD:203824"
misc_feature 128751..129641
/gene="thrS"
/locus_tag="hp2018_0131"
/note="Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is responsible
for the attachment of threonine to the 3' OH group of
ribose of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ThrRS_core;
cd00771"
/db_xref="CDD:29816"
misc_feature order(128760..128762,128799..128801,128952..128954,
128964..128966,128973..128978,129018..129020,
129114..129116,129120..129122,129126..129134,
129147..129155,129162..129164,129168..129170,
129450..129452,129459..129464,129474..129476,
129570..129575,129582..129584)
/gene="thrS"
/locus_tag="hp2018_0131"
/note="active site"
/db_xref="CDD:29816"
misc_feature order(128772..128774,128790..128792,128796..128804,
128808..128810,128814..128816,128820..128825,
128829..128831,128838..128840,128883..128888,
128898..128903,128907..128909,128913..128921,
128925..128927,128979..128987,128991..129002,
129006..129008,129042..129047,129054..129062,
129066..129074,129111..129113,129117..129119,
129126..129128,129156..129161,129240..129242,
129363..129371,129516..129518,129522..129524)
/gene="thrS"
/locus_tag="hp2018_0131"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29816"
misc_feature 128898..128921
/gene="thrS"
/locus_tag="hp2018_0131"
/note="motif 1; other site"
/db_xref="CDD:29816"
misc_feature 129111..129122
/gene="thrS"
/locus_tag="hp2018_0131"
/note="motif 2; other site"
/db_xref="CDD:29816"
misc_feature 129570..129584
/gene="thrS"
/locus_tag="hp2018_0131"
/note="motif 3; other site"
/db_xref="CDD:29816"
misc_feature 129639..129911
/gene="thrS"
/locus_tag="hp2018_0131"
/note="ThrRS Threonyl-anticodon binding domain. ThrRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
ThrRS_anticodon; cd00860"
/db_xref="CDD:29800"
misc_feature order(129663..129668,129771..129773,129789..129791,
129813..129815,129843..129845,129849..129851)
/gene="thrS"
/locus_tag="hp2018_0131"
/note="anticodon binding site; other site"
/db_xref="CDD:29800"
gene 129953..130546
/locus_tag="hp2018_0132"
/db_xref="GeneID:12371318"
CDS 129953..130546
/locus_tag="hp2018_0132"
/codon_start=1
/transl_table=11
/product="Translation initiation factor 3"
/protein_id="YP_005790945.1"
/db_xref="GI:385231026"
/db_xref="GeneID:12371318"
/translation="MLNGDINFKEVRCVGDDGEVYGIISSKEALKIAQNLGLDLVLIS
ASAKPPVCKVMDYNKFRYQNEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINYKVKHAR
EFIEANKHVKFKVVLKGRESQNSKAGLDVLLRVQTMMEDLANPEKEPKTEGRFVSWMF
VPKAKEAPKNEKKPKENNPPFNRINLMKGENHAKNED"
misc_feature 129953..130141
/locus_tag="hp2018_0132"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature 129956..130435
/locus_tag="hp2018_0132"
/note="translation initiation factor IF-3; Region: infC;
TIGR00168"
/db_xref="CDD:129272"
misc_feature 130205..130435
/locus_tag="hp2018_0132"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene 130527..130721
/locus_tag="hp2018_0133"
/db_xref="GeneID:12371319"
CDS 130527..130721
/locus_tag="hp2018_0133"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_005790946.1"
/db_xref="GI:385231027"
/db_xref="GeneID:12371319"
/translation="MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLN
APKHVHHTNAHSVMSLLCRA"
misc_feature 130527..130718
/locus_tag="hp2018_0133"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:234676"
gene 130816..131166
/locus_tag="hp2018_0134"
/db_xref="GeneID:12371320"
CDS 130816..131166
/locus_tag="hp2018_0134"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_005790947.1"
/db_xref="GI:385231028"
/db_xref="GeneID:12371320"
/translation="MRVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSMYY
AFRDRKQKKREFRSLWVVRINAACRMHNTSYSRFMHALKVANIELDRKVLADMAMNDM
QAFKSVLESVKEHL"
misc_feature 130879..131145
/locus_tag="hp2018_0134"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature order(130879..130896,130900..130911,130918..130923,
130933..130938,130945..130989,130993..131001,
131008..131010,131020..131022,131038..131043,
131050..131055,131062..131064,131086..131094)
/locus_tag="hp2018_0134"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature order(130918..130920,130930..130932,130939..130944,
130948..130953,130960..130962,131077..131088,
131095..131097,131113..131118,131134..131139)
/locus_tag="hp2018_0134"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature order(130981..130983,130990..130995,131002..131004,
131011..131016,131020..131022,131092..131094,
131101..131103,131110..131112)
/locus_tag="hp2018_0134"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene 131404..132225
/locus_tag="hp2018_0135"
/db_xref="GeneID:12371321"
CDS 131404..132225
/locus_tag="hp2018_0135"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005790948.1"
/db_xref="GI:385231029"
/db_xref="GeneID:12371321"
/translation="MTSLLSAETPKQEKAIKTSPTKKGERNAAFIGIDYQLGMLSTTA
QNCSNGNCNGNQSGAYGSNTPNMPTASNPTGGLTHGALGTRGYKGLSNQQYAINGFGF
VVGYKHFFKKSPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGYGAGTD
VLFNPAIFNRENLHFGFFLGVAIGGTSWGPTNYYFKDLAEEYRGSFHPSNFQVLVNGG
IRLGTKHQGFEIGLKIQTIRNNYYTASADNVPEGTTYRFTFHRPYAFYWRYIVSF"
misc_feature 131704..132222
/locus_tag="hp2018_0135"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:216743"
gene 132222..132350
/locus_tag="hp2018_0136"
/db_xref="GeneID:12371322"
CDS 132222..132350
/locus_tag="hp2018_0136"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790949.1"
/db_xref="GI:385231030"
/db_xref="GeneID:12371322"
/translation="MRCFRVNLWGGIEKGFCSLWPFMTFFSYAKAVIKRYHKLTKQ"
gene 132619..133050
/locus_tag="hp2018_0137"
/db_xref="GeneID:12371323"
CDS 132619..133050
/locus_tag="hp2018_0137"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790950.1"
/db_xref="GI:385231031"
/db_xref="GeneID:12371323"
/translation="MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEV
PEFRAEVNKRLEAMKEEDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKK
TMTMKEYREEGLDLHDCACEGPFHDHEKKGKKGKKPSHHKH"
misc_feature 132682..132960
/locus_tag="hp2018_0137"
/note="Protein of unknown function (DUF1104); Region:
DUF1104; pfam06518"
/db_xref="CDD:203471"
gene complement(133348..133536)
/locus_tag="hp2018_0138"
/db_xref="GeneID:12371324"
CDS complement(133348..133536)
/locus_tag="hp2018_0138"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790951.1"
/db_xref="GI:385231032"
/db_xref="GeneID:12371324"
/translation="MLIVAEAVSALNKKVVAAKKNKIRFTPNSYIHNRNKNRRYSSLS
PLLKSSSIYKNHLEFKLF"
gene 133556..134317
/locus_tag="hp2018_0139"
/db_xref="GeneID:12371325"
CDS 133556..134317
/locus_tag="hp2018_0139"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790952.1"
/db_xref="GI:385231033"
/db_xref="GeneID:12371325"
/translation="MFSESSTGNVKKDRKRVLKSMVDLEKERVKNFNQYSETKMSKGD
LSAFGAFFKGSLEDCVEQKICYYEHRNGKVSFVVNDREKFYKHVLKDLGTELSLPLFN
WLYKGSDFGALHEQFGDMYDGYIKYLISMVRVSQKEKARKVDAIVLKKMEEQAEKDTK
AAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLDPMTNANTLKETASKEPETSSKKE
KKPKKKRRLSKKEKQQQALQQEFEKQVSGSSESEK"
gene complement(134950..136317)
/locus_tag="hp2018_0140"
/db_xref="GeneID:12371326"
CDS complement(134950..136317)
/locus_tag="hp2018_0140"
/EC_number="4.3.1.17"
/codon_start=1
/transl_table=11
/product="L-serine dehydratase"
/protein_id="YP_005790953.1"
/db_xref="GI:385231034"
/db_xref="GeneID:12371326"
/translation="MASFSILSIFKIGVGPSSSHTIGPMEAGARFCGLLKGILEQVER
VQITLHGSLALTGKGHLSDEAVLIGLHGIYANELEATTKKALLHEALENKVLKLANQR
NIQFDYAKDLIFDNKPLARHQNALILKAFNAKNEVLKEETYYSVGGGFVYTEKELDNL
SEEGGNESIAYDFSSAKELLELCQKHQKSIAEIVRLRENALKNHPDATMTKIYHAMLE
CYHNGANSKERYLPGSLRVTRLAPSVKTRLEKHPTSGKDPLALIDYISLYARAIAEEN
ASGGKVVTAPTNGACAVVPSVLLYAKNHLFENLSQKSINDFLLTSAAIGYLYKKNASL
SGAEAGCQAEIGVASSMAAGGLAHLCQATTQQVLIASEIAMEHHLGLTCDPVGGLVQI
PCIERNVLGAIKAISASKLALEDEYKPKVSLDEVIATMYATGKDMNEKYKETSLGGLA
KTLKC"
misc_feature complement(134959..136308)
/locus_tag="hp2018_0140"
/note="L-serine dehydratase, iron-sulfur-dependent, single
chain form; Region: sda_mono; TIGR00720"
/db_xref="CDD:188076"
misc_feature complement(135841..136305)
/locus_tag="hp2018_0140"
/note="Serine dehydratase beta chain; Region: SDH_beta;
pfam03315"
/db_xref="CDD:202592"
misc_feature complement(134962..135768)
/locus_tag="hp2018_0140"
/note="Serine dehydratase alpha chain; Region: SDH_alpha;
pfam03313"
/db_xref="CDD:202591"
gene complement(136317..137558)
/gene="sdaC"
/locus_tag="hp2018_0141"
/db_xref="GeneID:12371327"
CDS complement(136317..137558)
/gene="sdaC"
/locus_tag="hp2018_0141"
/codon_start=1
/transl_table=11
/product="Serine transporter"
/protein_id="YP_005790954.1"
/db_xref="GI:385231035"
/db_xref="GeneID:12371327"
/translation="MTQEKAVIRDPKKLNLFDLRWIASLFGTAVGAGILFLPIRAGGH
GVWAIVVMSTIIFPLTYLGHRALAYFIGSKDQEDITMVVRSHFGAQWGFLITLLYFLA
IYPICLAYGVGITNVFDHFFTNQLHLAPFHRGLLAVVLVSLMMLVMVFNATIVTRICN
ALVYPLCLILLLFSLYLIPYWQGANLFVVPSFKEFVLAIWLTLPVLVFSFNHSPIIST
FTQNVGKEYGAFKEYKLNQIELGTSLMLLGFVMFFVFSCVMCLNADDFVKAREQNIPI
LSYFANTLNNPLINYAGPVVAFLAIFSSFFGHYYGAKEGLEGIIIQSLKLKQASKTLS
VSVTIFLWLTITLVAYINPNILDFIENLGGPIIALILFVMPMVAFYSVSSLKRFRNFK
VDIFVFVFGSLTALSVFLGLF"
misc_feature complement(136320..137534)
/gene="sdaC"
/locus_tag="hp2018_0141"
/note="Amino acid permeases [Amino acid transport and
metabolism]; Region: SdaC; COG0814"
/db_xref="CDD:31156"
misc_feature complement(136350..137510)
/gene="sdaC"
/locus_tag="hp2018_0141"
/note="serine transporter; Region: stp; TIGR00814"
/db_xref="CDD:162053"
gene 137740..139089
/locus_tag="hp2018_0142"
/db_xref="GeneID:12371328"
CDS 137740..139089
/locus_tag="hp2018_0142"
/EC_number="2.5.1.54"
/codon_start=1
/transl_table=11
/product="2-keto-3-deoxy-D-arabino-heptulosonate-7-
phosphate synthase II"
/protein_id="YP_005790955.1"
/db_xref="GI:385231036"
/db_xref="GeneID:12371328"
/translation="MSNTTWSPTSWHSFKIEQHPTYKDEQELERVKKELRSYPPLVFA
GEARNLQERLAQVIDNKAFLLQGGDCAESFSQFSANRIRDMFKVMMQMAIVLTFAGSI
PIVKVGRIAGQFAKPRSNATEILDDEEVLSYRGDIINGISKKEREPKPERMLKAYHQS
VATLNLIRAFAQGGLADLEQVHRFNLDFVKNNDFAQKYQQIADRITQALGFMRACGVE
IERTPILREVEFYTSHEALLLHYEEPLVRKDSLTNQFYDCSAHMLWIGERTRDPKGAH
VEFLRGVCNPIGVKIGPNASVSEVLELCDVLNPHNIKGRLNLIVRMGSKIIKERLPKL
LQGVLKEKRHILWSIDPMHGNTVKTNLGVKTRAFDSVLDEVKSFFEIHRAEGSLASGV
HLEMTGENVTECIGGSQAITEEGLSCHYYTQCDPRLNATQALELAFLIADMLKKQRA"
misc_feature 137752..139062
/locus_tag="hp2018_0142"
/note="Class-II DAHP synthetase family; Region:
DAHP_synth_2; pfam01474"
/db_xref="CDD:144897"
gene 139379..139513
/locus_tag="hp2018_0143"
/db_xref="GeneID:12371329"
CDS 139379..139513
/locus_tag="hp2018_0143"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790956.1"
/db_xref="GI:385231037"
/db_xref="GeneID:12371329"
/translation="MRISLLAVILALLFVACHETKKQILQNEADSTPSEKTIWQPEQK
"
gene complement(139737..140195)
/gene="tpx"
/locus_tag="hp2018_0144"
/db_xref="GeneID:12371330"
CDS complement(139737..140195)
/gene="tpx"
/locus_tag="hp2018_0144"
/EC_number="1.11.1.15"
/codon_start=1
/transl_table=11
/product="Thiol peroxidase,Bcp-type"
/protein_id="YP_005790957.1"
/db_xref="GI:385231038"
/db_xref="GeneID:12371330"
/translation="MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTP
GCTLEAKDFSALFSEFEKKNAVVVGVSPDNAQSHQKFISQCSLNVILLCDEDKKVANL
YKAYGKRMLYGKEHLGIIRSTFIINTQGVLEKCFYNVKAKGHAQKVLESL"
misc_feature complement(<139782..140180)
/gene="tpx"
/locus_tag="hp2018_0144"
/note="Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones]; Region: AhpC; COG0450"
/db_xref="CDD:30799"
misc_feature complement(139746..140168)
/gene="tpx"
/locus_tag="hp2018_0144"
/note="Peroxiredoxin (PRX) family, Bacterioferritin
comigratory protein (BCP) subfamily; composed of
thioredoxin-dependent thiol peroxidases, widely expressed
in pathogenic bacteria, that protect cells against
toxicity from reactive oxygen species by reducing...;
Region: PRX_BCP; cd03017"
/db_xref="CDD:48566"
misc_feature complement(order(139833..139835,140058..140060,
140067..140069))
/gene="tpx"
/locus_tag="hp2018_0144"
/note="catalytic triad [active]"
/db_xref="CDD:48566"
gene complement(140205..140840)
/locus_tag="hp2018_0145"
/db_xref="GeneID:12371331"
CDS complement(140205..140840)
/locus_tag="hp2018_0145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790958.1"
/db_xref="GI:385231039"
/db_xref="GeneID:12371331"
/translation="MSKELILKRIKEAKAKHAIQGANPIYRNIIKVEFEDLVEEYKHF
QVLNKAELIESTKENLEQAILKALENFQSKKVLHSTDLNLNFEAFKDFTLQPYDKEIE
AMREELFEIDTALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKESIVRNL
SEGIQALKNQSQNGVLPTNMLLIGGPSRTADIELKTVFGVHGPQKVAIILY"
misc_feature complement(140208..140840)
/locus_tag="hp2018_0145"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1556"
/db_xref="CDD:31745"
gene complement(140833..142278)
/locus_tag="hp2018_0146"
/db_xref="GeneID:12371332"
CDS complement(140833..142278)
/locus_tag="hp2018_0146"
/codon_start=1
/transl_table=11
/product="Iron-sulfur cluster-binding protein"
/protein_id="YP_005790959.1"
/db_xref="GI:385231040"
/db_xref="GeneID:12371332"
/translation="MEKYHSDQEYEEIITDQLGDTQLRENLRSAMDTLRANRKNLIKN
RYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLA
KEKNINRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIH
KNRKQIGKIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIW
LVENEGNGRMSTTACDVHVAICGIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIIT
GPRKNDDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGHA
YLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKV
GEGRGVVRGAKSTQHSGMEKFSMKMFAKMASDGAKWRFQLKMAQFFSPLGKLLAPILP
LVKEWASVRTLPNMDTSLHAKVQHLEGVIYE"
misc_feature complement(140893..142227)
/locus_tag="hp2018_0146"
/note="iron-sulfur cluster-binding protein; Region:
TIGR00273"
/db_xref="CDD:129374"
misc_feature complement(141394..142068)
/locus_tag="hp2018_0146"
/note="Uncharacterized ACR, YkgG family COG1556; Region:
DUF162; pfam02589"
/db_xref="CDD:202298"
misc_feature complement(<141079..>141366)
/locus_tag="hp2018_0146"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature complement(140839..141123)
/locus_tag="hp2018_0146"
/note="Domain of unknown function (DUF3390); Region:
DUF3390; pfam11870"
/db_xref="CDD:152306"
gene complement(142307..143035)
/locus_tag="hp2018_0147"
/db_xref="GeneID:12371333"
CDS complement(142307..143035)
/locus_tag="hp2018_0147"
/codon_start=1
/transl_table=11
/product="Fe-S oxidoreductase subunit"
/protein_id="YP_005790960.1"
/db_xref="GI:385231041"
/db_xref="GeneID:12371333"
/translation="MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQTCCGQ
PSYNSGYYEETKKVVLYNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEFNMVK
DFCSRVYELSEFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNV
ELIELEKEEECCGFGGTFSVKEPEISAVMVKEKIKDIESRHVDVIVSADAGCLMNIST
AMQKMGSLTKPMHFYDFLASRLGL"
misc_feature complement(142310..>143035)
/locus_tag="hp2018_0147"
/note="Fe-S oxidoreductase [Energy production and
conversion]; Region: GlpC; COG0247"
/db_xref="CDD:223325"
misc_feature complement(142781..143029)
/locus_tag="hp2018_0147"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature complement(142385..142642)
/locus_tag="hp2018_0147"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene 143256..144905
/gene="lldP_1"
/locus_tag="hp2018_0148"
/db_xref="GeneID:12371334"
CDS 143256..144905
/gene="lldP_1"
/locus_tag="hp2018_0148"
/codon_start=1
/transl_table=11
/product="L-lactate permease"
/protein_id="YP_005790961.1"
/db_xref="GI:385231042"
/db_xref="GeneID:12371334"
/translation="MEFYQVYDPLGHIWLSALVALSPIALFFISLIVFKLKGYSAGFL
SLALSILIALFVYKMPVQMVSASFFYGFLYGLWPIAWIVIAAIFLYNLSVKSGYFEIL
KESILSLTPDHRILVILIGFCFGSFLEGAIGFGGPVAITAAILVGLGLNPLYAAGLCL
IANTAPVAFGAVGIPITAMASVVGIPELEISQMVGRVLPIFSIGIPFFIVFLMDGFRG
IRETFPAVAVTGFSFAIAQFLSSNYLGPQLPDIISALVSLVATTLFLKFWQPKHIFTS
NGKEPTISTEKHHICKVVVAWMPFVLLTITIIIWTQPWFKALFKEGGALAFSSFAFEF
NSISQKIFKTVPIVTEATNFPVVFKLPLILTTGTSIFLAALLSVFLLRVKISDAIGVF
GATLKEMRLPILTIGVVLAFAYVANYSGMSATLALALADTGHVFTFFSPVVGWLGVFL
TGSDTSSNLLFGSLQMLIATQLGLPEVLFLAANTSGGVVGKMISPQSIAIACAAVGLV
GKESELFRFTVKYSIALAIIMGIVFTLIAYVFPFIIPVTPT"
misc_feature 143265..144869
/gene="lldP_1"
/locus_tag="hp2018_0148"
/note="L-lactate transport; Region: lctP; TIGR00795"
/db_xref="CDD:162041"
misc_feature 143289..144884
/gene="lldP_1"
/locus_tag="hp2018_0148"
/note="L-lactate permease [Energy production and
conversion]; Region: LldP; COG1620"
/db_xref="CDD:224535"
gene 144954..146606
/gene="lldP_2"
/locus_tag="hp2018_0149"
/db_xref="GeneID:12371335"
CDS 144954..146606
/gene="lldP_2"
/locus_tag="hp2018_0149"
/codon_start=1
/transl_table=11
/product="L-lactate permease"
/protein_id="YP_005790962.1"
/db_xref="GI:385231043"
/db_xref="GeneID:12371335"
/translation="MSEFHQVYDPLGNIWLSALVALLPILLFFLSLMVFKFKGYTAAF
LSVVLSAIIAVLVYKMPVSMVGSSFLYGFLYGLWPIAWIIIAAIFLYKLSVKSGYFEI
LKESVQSITLDHRILVILIGFCFGSFLEGAIGFGGPIAITAAILVLGLSPLYAAGLCL
IANTAPVAFGAVGIPISAMASAVGVPAILISAMTGKILFFVSLLVPFFIVFLMDGFKG
IKETFPAVFIAAFSFAGAQFLSSNYLGPELPGIISALVSLVATALFLKFWQPKTIFRS
DGKAVSFTKTNHHICKIYVAWSPFVILVLVIVLWIQPFFKALFEKDGLLAFSNFYFEF
NNISNHIFKSPPFVEANQSVNFPVVFKLLLINTVGTSIFLAALISMLVLRVRVSDAVS
VFGETLKEMRYPILTIGLVLSFAYVSNYSGISSTLALALTHTGLAFTFFSPLIGWVGV
FLTGSDTSSNLLFGSLQQLTAQRLQLPEILTLTANTVGGTLGKMISPQSIAIACAAVG
LAGKESDLFKFTVKYSLIFVAIMGVVISAIAYWIPEVVPAIK"
misc_feature 144954..146573
/gene="lldP_2"
/locus_tag="hp2018_0149"
/note="glycolate transporter; Provisional; Region:
PRK09695"
/db_xref="CDD:182032"
misc_feature 145050..146573
/gene="lldP_2"
/locus_tag="hp2018_0149"
/note="L-lactate transport; Region: lctP; TIGR00795"
/db_xref="CDD:162041"
gene complement(146630..147616)
/gene="mutY"
/locus_tag="hp2018_0150"
/db_xref="GeneID:12371336"
CDS complement(146630..147616)
/gene="mutY"
/locus_tag="hp2018_0150"
/codon_start=1
/transl_table=11
/product="A/G-specific adenine glycosylase"
/protein_id="YP_005790963.1"
/db_xref="GI:385231044"
/db_xref="GeneID:12371336"
/translation="METLHNALLKWYEEFGRKDLPFRNLKGINAPYEVYISEVMSQQT
QINTVVERFYSPFLEAFPTLKDLANAQLEKVLLLWRGLGYYSRAKNLKKSAEICVKEH
HSQLPNDYQSLLKLPGIGAYTANAILCFGFREKTACVDANVKRVLLRLFGLDPNIQAK
DLQIKANDFLNPNESFNHNQALIDLGALICSPKPKCAICPFNPYCLGKNHLEKHTLKK
KQEIIQEERYLGVVIQNNQIALEKIEQKLYFGMHHFPNLKENLEFKLPFLGAIKHSHT
KFKLNLNLYLATTKDLKNPIRFYSLKDLETLPISSMTLKILNFLKQKNLFVG"
misc_feature complement(147059..147523)
/gene="mutY"
/locus_tag="hp2018_0150"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature complement(146633..147499)
/gene="mutY"
/locus_tag="hp2018_0150"
/note="DNA glycosylase MutY; Provisional; Region:
PRK13910"
/db_xref="CDD:172427"
misc_feature complement(order(147356..147358,147473..147475,
147482..147490))
/gene="mutY"
/locus_tag="hp2018_0150"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature complement(147248..147271)
/gene="mutY"
/locus_tag="hp2018_0150"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature complement(order(147068..147070,147080..147082,
147239..147241))
/gene="mutY"
/locus_tag="hp2018_0150"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature complement(147197..147199)
/gene="mutY"
/locus_tag="hp2018_0150"
/note="active site"
/db_xref="CDD:28938"
misc_feature complement(146657..146947)
/gene="mutY"
/locus_tag="hp2018_0150"
/note="Nudix hydrolase is a superfamily of enzymes found
in all three kingdoms of life, and it catalyzes the
hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+...; Region:
Nudix_Hydrolase; cl00447"
/db_xref="CDD:212606"
gene complement(147617..149065)
/locus_tag="hp2018_0151"
/db_xref="GeneID:12371337"
CDS complement(147617..149065)
/locus_tag="hp2018_0151"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate/malate translocator"
/protein_id="YP_005790964.1"
/db_xref="GI:385231045"
/db_xref="GeneID:12371337"
/translation="MIKQILIILTPFFVATLLYFLGAPDGLNPNAWLYFCIFMGMIIG
LILEPVPAGLIALSALVLCIALKIGASSEVSSANKAISWGLSGYANKTVWLVFVAFIL
GLGYEKSLLGKRIALLLIRFLGQTPLGLGYAISLSELCLAPFIPSNSARSGGILYPIV
SSIPPLMGSTPSNNPNKIGAYLMWVALASTCITSSMFLTALAPNPLAMEIATKMGVNE
ISWFSWFLAFLPCGVVLILLVPLLAYKTCKPTLKGSKEVSLWAKKELESMGRFSLKEI
LMLSLTLLALLGWIFGKSLGLHASATALIVMVLMAFCKIVSYEDIIKNKSAFNIFLLL
GSLLTMAGGLKNVGFLNFIGNAAQNFLEHAHLDPLIAVLFIVALFYLSHYFFASITAH
VSALFALFVGIGSHIQGVNLQELSLFLMLSLGIMGILTPYGTGPSTIYYGSGYIQSKD
FWKWGFIFGFLYLIVFLSVCAPWVKFIAFRWL"
misc_feature complement(147635..149065)
/locus_tag="hp2018_0151"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:30819"
misc_feature complement(147632..149062)
/locus_tag="hp2018_0151"
/note="Sodium:sulfate symporter transmembrane region;
Region: Na_sulph_symp; pfam00939"
/db_xref="CDD:109974"
misc_feature complement(order(147671..147700,147788..147826,
147851..147871,147923..147928,147929..147961,
148034..148090,148139..148183,148283..148321,
148337..148381,148457..148492,148496..148528,
148550..148552,148562..148606,148610..148618,
148622..148627,148631..148675,148745..148798,
148871..148912,148931..148942))
/locus_tag="hp2018_0151"
/note="transmembrane helices; other site"
/db_xref="CDD:29728"
gene 149235..150701
/gene="fixN"
/locus_tag="hp2018_0152"
/db_xref="GeneID:12371338"
CDS 149235..150701
/gene="fixN"
/locus_tag="hp2018_0152"
/EC_number="1.9.3.1"
/codon_start=1
/transl_table=11
/product="Cytochrome c oxidase subunit I"
/protein_id="YP_005790965.1"
/db_xref="GI:385231046"
/db_xref="GeneID:12371338"
/translation="MQENVPLSYDYSISKLFLYAMIAFGIIGMLIGIVLAFELSFPSL
NYIAGEYGVFGRLRPLHTNAVIYGFTLGGIWASWYYIGQRVLKITYYQHPFLRFVGLL
HFWLWILLLVLGVISLFAGLTQSKEYAELMWPLDIIVVVAWVLWGVNMFGSMSVRREN
TIYVSLWYYIATYVGIAVMYIFNNLSIPTYFVADMGSVWHSISMYSGSNDALIQWWWG
HNAVAFVFTSGVIGTIYYFLPKESGQPIFSYKLTLFSFWSLMFVYIWAGGHHLIYSTV
PDWVQTLSSVFSVVLILPSWGTAINMLLTMRGQWHQLKESPLIKFLVLASTFYMLSTL
EGSIQAIKSVNALAHFTDWIIGHVHDGVLGWVGFTLIASMYHMTPRLFKREIYSGRLV
DFQFWIMTLGIVLYFSSMWIAGITQGMMWRDVDQYGNLTYQFIDTVKALIPYYNIRGV
GGLMYFIGFIIFAYNIFMTITAGKKLEREPNYATPMAR"
misc_feature 149253..150692
/gene="fixN"
/locus_tag="hp2018_0152"
/note="Heme-copper oxidase subunit I. Heme-copper
oxidases are transmembrane protein complexes in the
respiratory chains of prokaryotes and mitochondria which
catalyze the reduction of O2 and simultaneously pump
protons across the membrane. The superfamily is...;
Region: Heme_Cu_Oxidase_I; cl00275"
/db_xref="CDD:206949"
misc_feature order(149259..149261,149280..149282,149292..149297,
149307..149309,149463..149465,150288..150290,
150309..150311,150318..150323,150495..150500,
150582..150584)
/gene="fixN"
/locus_tag="hp2018_0152"
/note="Low-spin heme binding site [chemical binding];
other site"
/db_xref="CDD:29930"
misc_feature order(149337..149339,149346..149348,149370..149372,
149379..149381,149559..149564,149592..149594,
149604..149606)
/gene="fixN"
/locus_tag="hp2018_0152"
/note="D-pathway; other site"
/db_xref="CDD:29930"
misc_feature order(149850..149852,149865..149870,150267..150269,
150279..150284,150495..150497)
/gene="fixN"
/locus_tag="hp2018_0152"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29930"
misc_feature order(149889..149891,150039..150044,150303..150305)
/gene="fixN"
/locus_tag="hp2018_0152"
/note="Binuclear center (active site) [active]"
/db_xref="CDD:29930"
misc_feature order(149889..149891,149901..149903,149934..149936,
150039..150044,150117..150119,150126..150128)
/gene="fixN"
/locus_tag="hp2018_0152"
/note="K-pathway; other site"
/db_xref="CDD:29930"
misc_feature order(150042..150044,150279..150284,150495..150500)
/gene="fixN"
/locus_tag="hp2018_0152"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29930"
gene 150714..151412
/gene="fixO"
/locus_tag="hp2018_0153"
/db_xref="GeneID:12371339"
CDS 150714..151412
/gene="fixO"
/locus_tag="hp2018_0153"
/EC_number="1.9.3.1"
/codon_start=1
/transl_table=11
/product="Cytochrome c oxidase subunit II"
/protein_id="YP_005790966.1"
/db_xref="GI:385231047"
/db_xref="GeneID:12371339"
/translation="MFSFLEKNPFFFTLAFIFVFSIAGLVEILPNFFKSARPIEGLRP
YTVLETAGRQVYIQEGCYHCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIG
PDLHRVGDYRTTDWHEKHMLDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVF
GVPYDTENGVKLGNVEEAKKAYLEEAKKITADMKDKRVLDAIQRGEVLEIVALIAYLN
SLGNSRINANQNAK"
misc_feature 150714..151409
/gene="fixO"
/locus_tag="hp2018_0153"
/note="Cbb3-type cytochrome oxidase, cytochrome c subunit
[Energy production and conversion]; Region: CcoO; COG2993"
/db_xref="CDD:225540"
misc_feature 150717..151409
/gene="fixO"
/locus_tag="hp2018_0153"
/note="cytochrome c oxidase, cbb3-type, subunit II;
Region: ccoO; TIGR00781"
/db_xref="CDD:129863"
gene 151423..151641
/gene="fixQ"
/locus_tag="hp2018_0154"
/db_xref="GeneID:12371340"
CDS 151423..151641
/gene="fixQ"
/locus_tag="hp2018_0154"
/EC_number="1.9.3.1"
/codon_start=1
/transl_table=11
/product="Cytochrome c oxidase subunit IV"
/protein_id="YP_005790967.1"
/db_xref="GI:385231048"
/db_xref="GeneID:12371340"
/translation="MDLESLRGFAYAFFTILFTLFLYAYIFSMYRKQKKGVVDYERYG
YLALNDALEDELIEPRHKEVHDKGIKES"
misc_feature 151444..151608
/gene="fixQ"
/locus_tag="hp2018_0154"
/note="cytochrome c oxidase, cbb3-type, CcoQ subunit,
epsilon-Proteobacterial; Region: cbb3_Q_epsi; TIGR02736"
/db_xref="CDD:131783"
gene 151643..152521
/gene="fixP"
/locus_tag="hp2018_0155"
/db_xref="GeneID:12371341"
CDS 151643..152521
/gene="fixP"
/locus_tag="hp2018_0155"
/EC_number="1.9.3.1"
/codon_start=1
/transl_table=11
/product="Cytochrome c oxidase subunit III"
/protein_id="YP_005790968.1"
/db_xref="GI:385231049"
/db_xref="GeneID:12371341"
/translation="MDFLNDHINVFGLIAALVILVLTIYESSSLIKEMRDSKSQGELM
ENGHLIDGIGEFANNVPVGWIASFMCVIVWAFWYFFFGYPLNSFSQIGQYNEEVKAHN
QKFEAKWKHLGQKELVDMGQGIFLVHCSQCHGITAEGLHGSAQNLVHWDKEEGIIDTI
KHGSKGMDYPAGEMPAMEMDEKDAKAIASYVMAELSSVKKTKNPQLIDKGKELFESMG
CTGCHGNDGKGLQENQVFAADLTTYGTENFLRNILTHGKKGNIGRMPSFKYKNFSDLQ
VKALLEFIQSLKPLED"
misc_feature 151745..152503
/gene="fixP"
/locus_tag="hp2018_0155"
/note="cytochrome c oxidase, cbb3-type, subunit III;
Region: ccoP; TIGR00782"
/db_xref="CDD:129864"
misc_feature 152003..152218
/gene="fixP"
/locus_tag="hp2018_0155"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
misc_feature 152267..152506
/gene="fixP"
/locus_tag="hp2018_0155"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene 152532..152738
/locus_tag="hp2018_0156"
/db_xref="GeneID:12371342"
CDS 152532..152738
/locus_tag="hp2018_0156"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790969.1"
/db_xref="GI:385231050"
/db_xref="GeneID:12371342"
/translation="MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKD
INALEAKNTQNRANYELINQGSKK"
misc_feature 152541..152711
/locus_tag="hp2018_0156"
/note="Family of unknown function (DUF4006); Region:
DUF4006; pfam13179"
/db_xref="CDD:205360"
gene 152839..153432
/locus_tag="hp2018_0157"
/db_xref="GeneID:12371343"
CDS 152839..153432
/locus_tag="hp2018_0157"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790970.1"
/db_xref="GI:385231051"
/db_xref="GeneID:12371343"
/translation="MKGLWLVISLAFVGFLWANESYVFNNAKGRLVEKSVAFIEGVSK
ELYLKTGVRFAIDMTDFEKNPIALANKKERQSYQEGFLKQLKPPFVVFFFYHDAQKIE
LVADPKDLLDTDKIFFEKIAPLLPTNAKEYTPQRISAMLINGYSVAVDALAEKYHVNI
VQNFNAPKGVTFVKVVIYILLLTLLGAFLGLYFFKKS"
gene 153446..154027
/locus_tag="hp2018_0158"
/db_xref="GeneID:12371344"
CDS 153446..154027
/locus_tag="hp2018_0158"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790971.1"
/db_xref="GI:385231052"
/db_xref="GeneID:12371344"
/translation="MKEKNFWPLGIMSVLIFGLGIVVFLVVFALKNSPKNDLVYFKGH
NEVDLNFNAMLKTYENFKSNYRFLVGLKPLTESPKTPILPYFSKGTHGDKKIQENLLN
NALILEKSNTLYAQLQPLKPALDSPNIQVYLAFYPSQSQPRLLGTLDCKNACEPLKFD
LLEGDKVGRYKILFKFTFKNKEELILEQLAFFK"
gene 154638..155405
/locus_tag="hp2018_0159"
/db_xref="GeneID:12371345"
CDS 154638..155405
/locus_tag="hp2018_0159"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790972.1"
/db_xref="GI:385231053"
/db_xref="GeneID:12371345"
/translation="MGFLKVLKHDALGQVGNIVIGNFLITLTVLAVCFSSQSAEETTM
LTLSYTLFFVLGAFLLIAISVGAIKNLNALFSKRGVLSFSLPISLESLLLPKILLPMV
FFIFSLFWFVASVRLGYYLFNAQSSVLFILHTALKTFALKPTKTIGVALFLGLVLMKF
LFVLSVLNAARIKKARFLLGGLLFILVGVVLELAFNSLLPLMSSSLSINEGFYYFLQQ
QELQENKYYLLWGVDFLKILLLYGVIRYLLMHKLELD"
gene complement(155402..156265)
/locus_tag="hp2018_0160"
/db_xref="GeneID:12371346"
CDS complement(155402..156265)
/locus_tag="hp2018_0160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790973.1"
/db_xref="GI:385231054"
/db_xref="GeneID:12371346"
/translation="MISVAHSPDADDIFMYYAIKFGWIDCPIKNKTFHNIALDIETLN
QEALKNTYDVSAISFGLYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFKVAL
SGEHTTNALLFKIYYKHARIAYMNFLDIEKAVLEGKAHAGVLIHENILDFHDELEVEK
ELWDVWKELIGVDLPLPLGGMAIRRSIPLYRAILIKKALIKAVEIALKHQNLLSGMLL
ERSLIRVNKERLQTYLSLYANETSTRLSEVQILAIDKLFELGYQHGFYASLLKTKDCL
LTDEYLKYRFS"
misc_feature complement(155432..156265)
/locus_tag="hp2018_0160"
/note="Predicted periplasmic solute-binding protein
[General function prediction only]; Region: COG2107"
/db_xref="CDD:32290"
gene 156363..157406
/gene="recA"
/locus_tag="hp2018_0161"
/db_xref="GeneID:12371347"
CDS 156363..157406
/gene="recA"
/locus_tag="hp2018_0161"
/codon_start=1
/transl_table=11
/product="recombinase A"
/protein_id="YP_005790974.1"
/db_xref="GI:385231055"
/db_xref="GeneID:12371347"
/translation="MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTG
SLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDV
YYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALK
FYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEI
IDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANEITLKIKESIGSNEE
IMPLPDEPLEEME"
misc_feature 156363..157352
/gene="recA"
/locus_tag="hp2018_0161"
/note="recombinase A; Provisional; Region: recA; PRK09354"
/db_xref="CDD:236476"
misc_feature 156378..157355
/gene="recA"
/locus_tag="hp2018_0161"
/note="RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction of
the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange; Region: recA; cd00983"
/db_xref="CDD:238483"
misc_feature order(156402..156407,156411..156416,156423..156425,
156435..156449,156654..156659,156663..156683,
156696..156701,157005..157007,157017..157019,
157161..157163,157299..157301)
/gene="recA"
/locus_tag="hp2018_0161"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:238483"
misc_feature 156561..156584
/gene="recA"
/locus_tag="hp2018_0161"
/note="Walker A motif; other site"
/db_xref="CDD:238483"
misc_feature order(156567..156587,156651..156653,156663..156665,
156672..156674,156795..156797,156945..156947,
157047..157049,157086..157088,157152..157163)
/gene="recA"
/locus_tag="hp2018_0161"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238483"
misc_feature 156783..156797
/gene="recA"
/locus_tag="hp2018_0161"
/note="Walker B motif; other site"
/db_xref="CDD:238483"
gene 157418..158698
/gene="eno"
/locus_tag="hp2018_0162"
/db_xref="GeneID:12371348"
CDS 157418..158698
/gene="eno"
/locus_tag="hp2018_0162"
/EC_number="4.2.1.11"
/codon_start=1
/transl_table=11
/product="enolase"
/protein_id="YP_005790975.1"
/db_xref="GI:385231056"
/db_xref="GeneID:12371348"
/translation="MLTIKDIHALEVMDSRGNPTIQASVILSDNTKASAIVPSGASTG
KREALELRDNDKTRFLGKGVLRACENVNSVIKHHLIGLEATNQAFVDERLRALDGTPN
YANLGANAVLGVSMALARASAKALNLPLYRYLGGANALTLPVPMLNIINGGTHANNSI
DFQEYMIMPLGFESFKEALRASAEVYHTLKKLLDGKNQLTSVGDEGGFAPNFNNNVEP
LEIISQAIEKAGYKLGEEIALALDVASSELVDEHFNYHLKGENKILDSHELVAYYKEL
VAKYPIVSIEDGLSEDDWEGWAFLSKELGRQIQLVGDDLFVTNASILQKGIEKNVANA
ILIKPNQIGTISETLETIRLAKHHAYQCVMSHRSGESEDSFIADFAVALNTGEIKTGS
TARSERIAKYNRLLEIEHELKGGIYIGKELFKHG"
misc_feature 157418..158692
/gene="eno"
/locus_tag="hp2018_0162"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:178845"
misc_feature 157433..158650
/gene="eno"
/locus_tag="hp2018_0162"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:48188"
misc_feature order(157439..157441,157445..157471,157481..157483,
157517..157519,157883..157891,157952..157957,
157964..157969,157976..157981,158018..158023,
158042..158044,158048..158050,158525..158533,
158600..158608,158612..158617,158624..158626,
158633..158638,158645..158647)
/gene="eno"
/locus_tag="hp2018_0162"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48188"
misc_feature order(157541..157543,158141..158143,158273..158275,
158354..158356)
/gene="eno"
/locus_tag="hp2018_0162"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48188"
misc_feature order(157880..157882,158030..158032,158429..158431,
158513..158521,158582..158584)
/gene="eno"
/locus_tag="hp2018_0162"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:48188"
gene 158691..158966
/locus_tag="hp2018_0163"
/db_xref="GeneID:12371349"
CDS 158691..158966
/locus_tag="hp2018_0163"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790976.1"
/db_xref="GI:385231057"
/db_xref="GeneID:12371349"
/translation="MAESLFENDGIKNNKARDFFYSHSSLIAFFLLLLGFGYYLGKLL
FGGSSLEVYLDLRDKHERLQQEITELQSKNVRLQKRLFELRELRPRD"
gene 158983..159579
/locus_tag="hp2018_0164"
/db_xref="GeneID:12371350"
CDS 158983..159579
/locus_tag="hp2018_0164"
/codon_start=1
/transl_table=11
/product="Putative periplasmic protein"
/protein_id="YP_005790977.1"
/db_xref="GI:385231058"
/db_xref="GeneID:12371350"
/translation="MLKKMIGLVVVLSVLLARDNPFEPEINSKNLQGGFSGIYDDYLK
EIHVDLPTSARILKKITLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHTLNQTPFEK
RYQIQDFDFLMANNTMILHSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFF
SQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLK"
misc_feature 159346..159576
/locus_tag="hp2018_0164"
/note="AMIN domain; Region: AMIN; pfam11741"
/db_xref="CDD:204728"
gene 159584..160072
/gene="arok"
/locus_tag="hp2018_0165"
/db_xref="GeneID:12371351"
CDS 159584..160072
/gene="arok"
/locus_tag="hp2018_0165"
/EC_number="2.7.1.71"
/codon_start=1
/transl_table=11
/product="shikimate kinase"
/protein_id="YP_005790978.1"
/db_xref="GI:385231059"
/db_xref="GeneID:12371351"
/translation="MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSV
RGIFEELGEDNFRMFERNLIDELKTLKTPHVISTGGGIVMHDNLKGLGTTFYLKMDFE
TLIKRLNQKEREKRPLLNNLTQAKELFEKRQVLYEKNASFIIDARGGLNNSLKQVLQF
IA"
misc_feature 159584..160069
/gene="arok"
/locus_tag="hp2018_0165"
/note="Shikimate kinase [Amino acid transport and
metabolism]; Region: AroK; COG0703"
/db_xref="CDD:31047"
misc_feature 159593..160027
/gene="arok"
/locus_tag="hp2018_0165"
/note="Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway which
converts erythrose-4-phosphate to chorismic acid, found in
bacteria, fungi and plants. Chorismic acid is a important
intermediate in the synthesis...; Region: SK; cd00464"
/db_xref="CDD:30188"
misc_feature order(159614..159631,159902..159904,159929..159931)
/gene="arok"
/locus_tag="hp2018_0165"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:30188"
misc_feature order(159626..159628,159674..159676,159680..159682)
/gene="arok"
/locus_tag="hp2018_0165"
/note="magnesium binding site [ion binding]; other site"
/db_xref="CDD:30188"
misc_feature order(159680..159682,159752..159754,159761..159763,
159818..159826,159977..159979)
/gene="arok"
/locus_tag="hp2018_0165"
/note="putative shikimate binding site; other site"
/db_xref="CDD:30188"
gene 160093..161049
/gene="pglG"
/locus_tag="hp2018_0166"
/db_xref="GeneID:12371352"
CDS 160093..161049
/gene="pglG"
/locus_tag="hp2018_0166"
/codon_start=1
/transl_table=11
/product="N-linked glycosylation glycosyltransferase"
/protein_id="YP_005790979.1"
/db_xref="GI:385231060"
/db_xref="GeneID:12371352"
/translation="MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNRQI
SKMQAEIKMAKSFFVLDAKGMLMLKPSQFKEHGHKEGLLEHDLTEGIELESHVSFSDK
YYFYQAVNEKRCILTDPYPSKQGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEIS
SPSKYFKTFSEGSMVMYFMISIMLTLVSLLLFVKCISSFWTAIVHFSSFDIKEVFHPI
VLLTLALATFDLVKAIFEEEVLGKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFK
FSVSEPDKITYAVYLAIGVAVLLISLAIYVKFAYSVLPKRER"
misc_feature 160438..>160596
/gene="pglG"
/locus_tag="hp2018_0166"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
gene complement(161046..162152)
/locus_tag="hp2018_0167"
/db_xref="GeneID:12371353"
CDS complement(161046..162152)
/locus_tag="hp2018_0167"
/codon_start=1
/transl_table=11
/product="putative lipopolysaccharide biosynthesis
protein"
/protein_id="YP_005790980.1"
/db_xref="GI:385231061"
/db_xref="GeneID:12371353"
/translation="MSITIPIVIAFDNHYAIPASVSLYSMLACTKTKHHDKKLFYKIH
CLVDNLSLENQQKLKETLAPFSTFASVDFLDISDPNNPTTTSAEPSVIDKIHEAFSQL
NIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAK
DFSSPKNLKHFQTEREREPRQKFSLYEHYLKEKDMQIICKNHYNVGFLIVNLKLWCMD
HLEERLLNLAHQKGQCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMTNQKRFIPNQQE
IIMLHFYFVGKPWVLPTFSYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTF
EFLAPLLNPKTLLEYVFFRLSKIFKRLKERFLNS"
misc_feature complement(161058..162143)
/locus_tag="hp2018_0167"
/note="Lipopolysaccharide biosynthesis proteins,
LPS:glycosyltransferases [Cell envelope biogenesis, outer
membrane]; Region: RfaJ; COG1442"
/db_xref="CDD:31631"
misc_feature complement(161286..162140)
/locus_tag="hp2018_0167"
/note="A4GalT_like proteins catalyze the addition of
galactose or glucose residues to the lipooligosaccharide
(LOS) or lipopolysaccharide (LPS) of the bacterial cell
surface; Region: GT8_A4GalT_like; cd04194"
/db_xref="CDD:133037"
misc_feature complement(order(161292..161294,161301..161306,
161310..161312,161367..161369,161433..161438,
161535..161543,161670..161672,161745..161753,
161802..161804,161811..161813,162108..162113,
162117..162125))
/locus_tag="hp2018_0167"
/note="Ligand binding site; other site"
/db_xref="CDD:133037"
misc_feature complement(order(161310..161312,161745..161747,
161751..161753))
/locus_tag="hp2018_0167"
/note="metal-binding site"
/db_xref="CDD:133037"
gene 162305..163222
/locus_tag="hp2018_0168"
/db_xref="GeneID:12371354"
CDS 162305..163222
/locus_tag="hp2018_0168"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790981.1"
/db_xref="GI:385231062"
/db_xref="GeneID:12371354"
/translation="MIKSWTKKWVLILFLMASCFGHLVATTGEKYFKMANQALKRGDY
HRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASL
GSMYEDGDGVQKDLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGVGVKQNYAKALSLSK
YACSLNYGISCNFVGYMYRSAKGVEQDLKKAFANFKRGCHLKDGASCVSLGYLYEAGM
NVKQNQEQAMSLYKKGCSLKEGSGCHNVAVMYYTGKGAPKDLEKATSYYKKGCALGFS
GSCKVLEVIGKESDNLQDDAQNDTQDSVQ"
misc_feature 162377..163159
/locus_tag="hp2018_0168"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 162488..162589
/locus_tag="hp2018_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 162590..162694
/locus_tag="hp2018_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 162704..162805
/locus_tag="hp2018_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 162812..162913
/locus_tag="hp2018_0168"
/note="Sel1 repeat; Region: Sel1; cl02723"
/db_xref="CDD:207711"
misc_feature 162914..163018
/locus_tag="hp2018_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 163028..163126
/locus_tag="hp2018_0168"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(163635..163754)
/locus_tag="hp2018_0169"
/db_xref="GeneID:12371355"
CDS complement(163635..163754)
/locus_tag="hp2018_0169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790982.1"
/db_xref="GI:385231063"
/db_xref="GeneID:12371355"
/translation="MGILQSLSVQSAFNLLRIIPLKGVTPNTSYHRCECMGIL"
gene complement(163883..164605)
/locus_tag="hp2018_0170"
/db_xref="GeneID:12371356"
CDS complement(163883..164605)
/locus_tag="hp2018_0170"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790983.1"
/db_xref="GI:385231064"
/db_xref="GeneID:12371356"
/translation="MGRAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTN
AKLRTAILNAKAQNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMTDNP
TRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKSEVENLKLSLEDLEFALID
YGLEELEEVEDKIIIRGDYNSFKLLNEGFESLRLPILKAGLQRIATTPIELNDEQMEL
TEKLLDRIEDDDDVVALYTNIE"
misc_feature complement(163886..164605)
/locus_tag="hp2018_0170"
/note="hypothetical protein; Provisional; Region:
PRK12378"
/db_xref="CDD:183483"
gene complement(164606..165577)
/gene="hemB"
/locus_tag="hp2018_0171"
/db_xref="GeneID:12371357"
CDS complement(164606..165577)
/gene="hemB"
/locus_tag="hp2018_0171"
/EC_number="4.2.1.24"
/codon_start=1
/transl_table=11
/product="porphobilinogen synthase"
/protein_id="YP_005790984.1"
/db_xref="GI:385231065"
/db_xref="GeneID:12371357"
/translation="MFKRLRRLRSSENLRAMLRETHLNINDFIAPLFVIESDSYIKNE
ISSMPGVYQMSIEPLLKECEELVGLGIKAVLLFGIPKHKDATGSHALNKDHIVAKATK
EVKKRFKDLIVIADLCFCEYTDHGHCGILENDSVSNDKTLEILNLQGLILAESGVDIL
APSNMMDGNVLSLRKTLDKAGYFHTPIMSYSTKFASSYYGPFRDVANSAPSFGDRKSY
QMDYANQKEALLESLEDEKQGADILMVKPALAYLDIVKEIRDHTLLPLALYNVSGEYA
MLKLAQKHNLINYESVLLETMTCFKRAGADMIISYHAKEVANLLQRN"
misc_feature complement(164618..165544)
/gene="hemB"
/locus_tag="hp2018_0171"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region: ALAD_PBGS;
cd00384"
/db_xref="CDD:88598"
misc_feature complement(order(164672..164674,164681..164683,
164693..164695,164747..164749,164819..164833,
164885..164890,164897..164899,164915..164917,
164924..164926,164984..164992,165077..165082,
165161..165166,165431..165433,165440..165442,
165515..165517))
/gene="hemB"
/locus_tag="hp2018_0171"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88598"
misc_feature complement(order(164645..164647,164762..164764,
164771..164773,164840..164842,164921..164923,
164933..164935,164954..164956,164969..164974,
164981..164983,164999..165001,165089..165091,
165194..165196,165218..165220,165224..165226,
165230..165232))
/gene="hemB"
/locus_tag="hp2018_0171"
/note="active site"
/db_xref="CDD:88598"
misc_feature complement(order(164840..164842,164999..165001))
/gene="hemB"
/locus_tag="hp2018_0171"
/note="Schiff base residues; other site"
/db_xref="CDD:88598"
gene complement(165599..166927)
/locus_tag="hp2018_0172"
/db_xref="GeneID:12371358"
CDS complement(165599..166927)
/locus_tag="hp2018_0172"
/codon_start=1
/transl_table=11
/product="putative histidine kinase sensor protein"
/protein_id="YP_005790985.1"
/db_xref="GI:385231066"
/db_xref="GeneID:12371358"
/translation="MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHEKYQNEVRHY
QFITTINEILNNYSDYRAIEDYLYKIGFRETTMENLEKVLAKRRHQLHHRNIGYAEVL
KLSDMVFILLKKDEHFVLYKDLYSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLREL
RSQVKRFAQGDKSVSCKSKQKDEIGDLANEFDNCILKINAMNESRVLFLRSIMHELRT
PITKGKILSSMLKEELPQKRFISIFDHLNTLIEQFARIEQLASKNYGSNKEKFLMSDL
IDKIEKMLLIDEDKKSPIHVSSSNYIIEADFELFAIALKNMVDNAIKYSDDKQVFLDF
IGNDLVVSNKSEPLKEDFEKYLQPYFKSSNPSQDHGFGLGMYIIKNALEAMGLNLSYH
YGNGIICFTIHDCVFNSFYDLEADNEEPPPPRKFERGEGNEGNRKSQLWG"
misc_feature complement(165719..166456)
/locus_tag="hp2018_0172"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(166319..166456)
/locus_tag="hp2018_0172"
/note="HAMP (Histidine kinases, Adenylyl cyclases, Methyl
binding proteins, Phosphatases) domain; Region: HAMP;
smart00304"
/db_xref="CDD:197640"
misc_feature complement(166169..166324)
/locus_tag="hp2018_0172"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(166169..166171,166181..166183,
166190..166192,166211..166213,166250..166252,
166259..166261,166271..166273,166280..166282,
166292..166294,166304..166306))
/locus_tag="hp2018_0172"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(166286..166288)
/locus_tag="hp2018_0172"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(165719..166000)
/locus_tag="hp2018_0172"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(165728..165730,165734..165736,
165749..165751,165755..165757,165803..165814,
165884..165889,165893..165895,165899..165901,
165905..165907,165959..165961,165968..165970,
165980..165982))
/locus_tag="hp2018_0172"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(165968..165970)
/locus_tag="hp2018_0172"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(165806..165808,165812..165814,
165887..165889,165893..165895))
/locus_tag="hp2018_0172"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(166951..167628)
/gene="ompR"
/locus_tag="hp2018_0173"
/db_xref="GeneID:12371359"
CDS complement(166951..167628)
/gene="ompR"
/locus_tag="hp2018_0173"
/codon_start=1
/transl_table=11
/product="response regulator protein"
/protein_id="YP_005790986.1"
/db_xref="GI:385231067"
/db_xref="GeneID:12371359"
/translation="MIEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQ
NYDLLLLDLTLPNLDGLEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKP
YDPKELLARIQSLLRRSHKKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEIL
SLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRG
IGYKLEY"
misc_feature complement(166957..167619)
/gene="ompR"
/locus_tag="hp2018_0173"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature complement(167281..167616)
/gene="ompR"
/locus_tag="hp2018_0173"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(167323..167328,167335..167337,
167392..167394,167449..167451,167473..167475,
167602..167607))
/gene="ompR"
/locus_tag="hp2018_0173"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(167473..167475)
/gene="ompR"
/locus_tag="hp2018_0173"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(167449..167457,167461..167466))
/gene="ompR"
/locus_tag="hp2018_0173"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(167320..167328)
/gene="ompR"
/locus_tag="hp2018_0173"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature complement(166960..167229)
/gene="ompR"
/locus_tag="hp2018_0173"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature complement(order(166969..166971,166984..166986,
167020..167025,167047..167049,167056..167058,
167110..167115,167170..167172))
/gene="ompR"
/locus_tag="hp2018_0173"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene complement(167864..168301)
/locus_tag="hp2018_0174"
/db_xref="GeneID:12371360"
CDS complement(167864..168301)
/locus_tag="hp2018_0174"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790987.1"
/db_xref="GI:385231068"
/db_xref="GeneID:12371360"
/translation="MELKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNT
PLEPKNATKIETQEKIAEEKEEAQGIIIEEITPKTPKQAPISNERVFLKSLLERTLVL
FQGMQALEEKEALKRLDLVARFLQYQLSVLEKRLESLERENTE"
gene complement(168292..168555)
/locus_tag="hp2018_0175"
/db_xref="GeneID:12371361"
CDS complement(168292..168555)
/locus_tag="hp2018_0175"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790988.1"
/db_xref="GI:385231069"
/db_xref="GeneID:12371361"
/translation="MPLETITLAHIYEEQGFFEEALQIYTNILNKTPDHTEALKQIKR
LEKIQKNCAPFKHDALLERHYLNFIKGDFLSVENLEQWLVEWN"
gene complement(168589..169869)
/locus_tag="hp2018_0176"
/db_xref="GeneID:12371362"
CDS complement(168589..169869)
/locus_tag="hp2018_0176"
/codon_start=1
/transl_table=11
/product="Putative protease"
/protein_id="YP_005790989.1"
/db_xref="GI:385231070"
/db_xref="GeneID:12371362"
/translation="MNQVELLSPAGNLKKLKIALNYGADAVYGGVSHFSLRNRASKEF
TLETFKEGIDYAHALNKKVYATINGFPFNSQLKLLEEHLYKMAELEPDAFIIAAPGVI
KLASKIAPHIPIHLSTQANVLNLLDAQVFYDLGVKRIVCARELSLNDAIEIKKALPDL
ELEIFVHGSMCFAFSGRCLISALQKGRVPNRGSCANDCRFDYEYYVKNPDNGVMMRLV
EEEGVGTHIFNAKDLNLSGHIAEILSSNAISALKIEGRTKSSYYAAQTTRIYRLAVDD
FYHNTLKPSFYASELNTLKNRGFTDGYLMRRPFERLDTQNHQTAISEGDFQVNGEITE
DGRFFACKFTTTTNIAYEIIAPKNAAITPVVNEIGKIYTFEKRSYLVLYKILLENNTE
LETIHSGNMNLVRLPAPLPAFSFLRTQVESKNGV"
misc_feature complement(168817..169869)
/locus_tag="hp2018_0176"
/note="Collagenase and related proteases
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0826"
/db_xref="CDD:31168"
misc_feature complement(168946..169644)
/locus_tag="hp2018_0176"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:201619"
gene complement(169872..170591)
/locus_tag="hp2018_0177"
/db_xref="GeneID:12371363"
CDS complement(169872..170591)
/locus_tag="hp2018_0177"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790990.1"
/db_xref="GI:385231071"
/db_xref="GeneID:12371363"
/translation="MTQEELDALMSGGDLENLEALEAKEEAKEEPKEGKKNSNYSEKM
TVKKEDAEKYGKISPNEWPPPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGSSA
EKIAKMVKKIQEPLQKHQEIFDNLHAHFPHVKSFKTVLNEQQEILNALKSIEEEATNC
SDSSMQAMDIMQFQDIHRQKIERVVNVMRALSQYMNSLFEGKIDDSKRVSSATFITGD
DDKDLASADDIEALIASFGAK"
gene complement(170661..171752)
/locus_tag="hp2018_0178"
/db_xref="GeneID:12371364"
CDS complement(170661..171752)
/locus_tag="hp2018_0178"
/codon_start=1
/transl_table=11
/product="Peptide chain release factor 2"
/protein_id="YP_005790991.1"
/db_xref="GI:385231072"
/db_xref="GeneID:12371364"
/translation="MDNYTYSELLKSLQNKCDNIALIIKPEKIKQELERIEKEQEDPN
FWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESVELFELAQNDNDEVTLSLLYEEA
PVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQDWASILYRMYLRWAERRGF
KSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLVRISPFDANAKRHTSFAS
VQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
RSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWGHQIRSYVLAPYQQVKDA
RSNIAYSNVEAILDGDIDAILEGVLIAKA"
misc_feature complement(170664..171749)
/locus_tag="hp2018_0178"
/note="peptide chain release factor 2; Region: prfB;
TIGR00020"
/db_xref="CDD:211537"
misc_feature complement(171171..171503)
/locus_tag="hp2018_0178"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature complement(170748..171041)
/locus_tag="hp2018_0178"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene complement(171813..172988)
/gene="moeA"
/locus_tag="hp2018_0179"
/db_xref="GeneID:12371365"
CDS complement(171813..172988)
/gene="moeA"
/locus_tag="hp2018_0179"
/codon_start=1
/transl_table=11
/product="Molybdopterin biosynthesis protein"
/protein_id="YP_005790992.1"
/db_xref="GI:385231073"
/db_xref="GeneID:12371365"
/translation="MISFKEALKIHSNIPLKPLEVEVVSLFESAGRILAEDIICVHAL
PKFNQSAMDGYGFKMQDLGQKTQVIQHIFAGDDVSALEVKENECVKIMTGAMVPKGIE
TIVPIECMLESHKDFALAPKDFKIHANIRQKGENASLNSVLVPKNTRLNYGHIALIAS
QGFKEIKAFRKLKIALFSSGDELVPLGQNALECQVYDVNSVGVFNMLKNYNTHFLGVL
KDDKNLQLKILELQDYDVILSSAGVSVGDKDFFKDALKEKNALFYYEKVNLKPGKPVT
LAQLNQSIIIGLPGNPLSCLLVLRVLILPLLERLSLNKDFKLNPFKAQINAPLKLKNK
RTHLILGNYSNHQFIPYNNNRYESGAIQALAQVDSIALIDEGVGLVQGEIEILRFEN"
misc_feature complement(171819..172988)
/gene="moeA"
/locus_tag="hp2018_0179"
/note="Molybdopterin biosynthesis enzyme [Coenzyme
metabolism]; Region: MoeA; COG0303"
/db_xref="CDD:30651"
misc_feature complement(171822..172979)
/gene="moeA"
/locus_tag="hp2018_0179"
/note="MoeA family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (MoCF), an
essential cofactor of a diverse group of redox enzymes.
MoCF biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and...; Region: MoeA;
cd00887"
/db_xref="CDD:58168"
misc_feature complement(order(171834..171836,171912..171914,
172026..172028,172386..172388,172395..172397,
172401..172403,172503..172505,172509..172514,
172521..172523,172527..172538,172581..172583,
172908..172910))
/gene="moeA"
/locus_tag="hp2018_0179"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58168"
misc_feature complement(order(172263..172265,172329..172331,
172443..172445,172449..172454))
/gene="moeA"
/locus_tag="hp2018_0179"
/note="putative functional site; other site"
/db_xref="CDD:58168"
misc_feature complement(order(172098..172100,172107..172109,
172119..172124,172257..172265))
/gene="moeA"
/locus_tag="hp2018_0179"
/note="putative MPT binding site; other site"
/db_xref="CDD:58168"
gene complement(172998..173765)
/gene="fliR"
/locus_tag="hp2018_0180"
/db_xref="GeneID:12371366"
CDS complement(172998..173765)
/gene="fliR"
/locus_tag="hp2018_0180"
/codon_start=1
/transl_table=11
/product="Flagellar biosynthesis protein"
/protein_id="YP_005790993.1"
/db_xref="GI:385231074"
/db_xref="GeneID:12371366"
/translation="MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRG
ALSLYVSAIFYPTLEFSNATYTPEGFIIACLCELFLGVCASVFLQIVFASLVFATDSI
SFSMGLTMASAYDPISGSQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLG
RFVFEPELAKNIVKAFSHLFVIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGF
PVKIAIGFVGIILIASAIMGRFKDEISLAFSVISKIF"
misc_feature complement(173022..173732)
/gene="fliR"
/locus_tag="hp2018_0180"
/note="flagellar biosynthesis protein FliR; Reviewed;
Region: fliR; PRK05701"
/db_xref="CDD:180211"
gene complement(173759..174481)
/locus_tag="hp2018_0181"
/db_xref="GeneID:12371367"
CDS complement(173759..174481)
/locus_tag="hp2018_0181"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790994.1"
/db_xref="GI:385231075"
/db_xref="GeneID:12371367"
/translation="MFLSIFKKSFNDFLSARMLLINLGPILLSLAFFGAVFHYNGESV
VNYCQALLPQSLSDYSHSQGFFSGVFVWVFKALVYFLIFWIAILLSLVINVFASIFYT
PLVVSYLHQKYYPHVVLEEFGSILFSIKYFLKTLILMLVLLALLTPFYFIPFIGVFGV
FFSIIPHFLFFKNTMSLDIASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFFNF
FATLLQTLMLTHYFFILKEKEC"
misc_feature complement(173822..174466)
/locus_tag="hp2018_0181"
/note="Etoposide-induced protein 2.4 (EI24); Region: EI24;
pfam07264"
/db_xref="CDD:203606"
gene 174964..175863
/locus_tag="hp2018_0182"
/db_xref="GeneID:12371368"
CDS 174964..175863
/locus_tag="hp2018_0182"
/codon_start=1
/transl_table=11
/product="putative peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_005790995.1"
/db_xref="GI:385231076"
/db_xref="GeneID:12371368"
/translation="MKKNILNLALVGALSASFLMAKPAHNANNSTHNTKETTDASAGV
LATVDGRPITKSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQ
TPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHAR
HILVKTEDEAKRIISEIDKQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQ
MAPDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEK
LFQERMNQRIEELRKHAKIVINK"
misc_feature 174985..175860
/locus_tag="hp2018_0182"
/note="Parvulin-like peptidyl-prolyl isomerase
[Posttranslational modification, protein turnover,
chaperones]; Region: SurA; COG0760"
/db_xref="CDD:223831"
misc_feature 175444..175719
/locus_tag="hp2018_0182"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
gene 175880..176803
/locus_tag="hp2018_0183"
/db_xref="GeneID:12371369"
CDS 175880..176803
/locus_tag="hp2018_0183"
/EC_number="4.1.2.13"
/codon_start=1
/transl_table=11
/product="Fructose-bisphosphate aldolase class II"
/protein_id="YP_005790996.1"
/db_xref="GI:385231077"
/db_xref="GeneID:12371369"
/translation="MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPL
FIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVM
IDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEA
EQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDD
VRKSYLDAGGDLKGSKGVPFEFLQESIKGGINKVNTDTDLRIAFIAEVRKVANEYKSQ
FDLRKFFSPAQLALKNVVKERMKLLGSANKI"
misc_feature 175892..176794
/locus_tag="hp2018_0183"
/note="Tagatose-1,6-bisphosphate (TBP) aldolase and
related Type B Class II aldolases. TBP aldolase is a
tetrameric class II aldolase that catalyzes the reversible
condensation of dihydroxyacetone phosphate with
glyceraldehyde 3-phsophate to produce tagatose 1; Region:
TBP_aldolase_IIB; cd00947"
/db_xref="CDD:29573"
misc_feature 175898..176797
/locus_tag="hp2018_0183"
/note="hypothetical protein; Provisional; Region:
PRK08185"
/db_xref="CDD:181275"
misc_feature order(175955..175963,175970..175972,176030..176032,
176039..176047,176057..176059,176069..176071,
176078..176083,176303..176305,176645..176650,
176654..176659,176666..176668,176678..176680,
176687..176689)
/locus_tag="hp2018_0183"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29573"
misc_feature order(176123..176128,176414..176422,176426..176428,
176507..176512,176516..176518,176636..176638,
176642..176647)
/locus_tag="hp2018_0183"
/note="active site"
/db_xref="CDD:29573"
misc_feature order(176126..176128,176417..176419,176507..176509)
/locus_tag="hp2018_0183"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29573"
misc_feature order(176414..176416,176420..176422,176426..176428,
176510..176512,176516..176518)
/locus_tag="hp2018_0183"
/note="Na+ binding site [ion binding]; other site"
/db_xref="CDD:29573"
gene 176825..177388
/locus_tag="hp2018_0184"
/db_xref="GeneID:12371370"
CDS 176825..177388
/locus_tag="hp2018_0184"
/codon_start=1
/transl_table=11
/product="translation elongation factor P"
/protein_id="YP_005790997.1"
/db_xref="GI:385231078"
/db_xref="GeneID:12371370"
/translation="MAIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKS
FLDGKVIEKTFHAGDKCEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEA
SKWMLDGMQVQVLLHNDKAISVDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAV
VQVPFHVLEGETIKVNTETEEYLEKVK"
misc_feature 176831..177385
/locus_tag="hp2018_0184"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:234788"
misc_feature 176837..177004
/locus_tag="hp2018_0184"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature 177026..177205
/locus_tag="hp2018_0184"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:239916"
misc_feature order(177092..177094,177167..177169,177182..177187)
/locus_tag="hp2018_0184"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239916"
misc_feature 177212..177379
/locus_tag="hp2018_0184"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:240220"
misc_feature order(177299..177301,177350..177352,177365..177370)
/locus_tag="hp2018_0184"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240220"
gene complement(177859..177978)
/locus_tag="hp2018_0185"
/db_xref="GeneID:12371371"
CDS complement(177859..177978)
/locus_tag="hp2018_0185"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005790998.1"
/db_xref="GI:385231079"
/db_xref="GeneID:12371371"
/translation="MFEFQSTLIFNKNRITLFYRFKLYHKTHFLREYFALLPP"
gene complement(178115..179137)
/locus_tag="hp2018_0186"
/db_xref="GeneID:12371372"
CDS complement(178115..179137)
/locus_tag="hp2018_0186"
/codon_start=1
/transl_table=11
/product="Pseudaminic acid synthase"
/protein_id="YP_005790999.1"
/db_xref="GI:385231080"
/db_xref="GeneID:12371372"
/translation="MLQRPKIVAELSANHNQDLNLAKESLHAIKESGADFAKLQTYTP
SCMTLNSKEDPFIIQGTLWDKENLYGLYQKASTPLEWHAELFELARKLDLGIFSSPFS
SKALELLESLDCPMYKIASFEIVDLDLIEKAARTQKPIILSSGIATHAELQDAISLCR
GVNNFDITLLKCVSAYPSKLEDANLLSMVKLGETFGVKFGLSDHTIGSLCPILATTLG
ASMIEKHFILNKSLQTPDSAFSMDFNGFKSMVGAIKQSVLALGEEEPKINPKTLEERR
FFARSLFVIKDIQKGEALTSDNIKALRPNLGLHPKFYKEILGQKASKFLKANTPLNAD
DIERTL"
misc_feature complement(178145..179128)
/locus_tag="hp2018_0186"
/note="pseudaminic acid synthase; Region: PseI; TIGR03586"
/db_xref="CDD:163337"
misc_feature complement(178352..179059)
/locus_tag="hp2018_0186"
/note="NeuB family; Region: NeuB; pfam03102"
/db_xref="CDD:202535"
misc_feature complement(178130..178303)
/locus_tag="hp2018_0186"
/note="C-terminal SAF domain of sialic acid synthetase;
Region: SAF_NeuB_like; cd11615"
/db_xref="CDD:212160"
misc_feature complement(order(178205..178213,178229..178237,
178283..178285,178298..178303))
/locus_tag="hp2018_0186"
/note="NeuB binding interface [polypeptide binding]; other
site"
/db_xref="CDD:212160"
misc_feature complement(178229..178231)
/locus_tag="hp2018_0186"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:212160"
gene complement(179141..179782)
/locus_tag="hp2018_0187"
/db_xref="GeneID:12371373"
CDS complement(179141..179782)
/locus_tag="hp2018_0187"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_005791000.1"
/db_xref="GI:385231081"
/db_xref="GeneID:12371373"
/translation="MIKAIDISHAFEKPLYNGVNLHIKPQESLAILGVSGSGKSTLLS
HLATMLKPDSGTVSLLEHQDIYALNSKKLLELRRLKVGIVFQSHYLFKGFSALENLQV
ASILAKQEINHSLLEQLGIAHTLKQGVGELSGGQQQRLSIARVLSKKPQIIIADEPTG
NLDTISANQVISMLQNYITENEGALVLATHDEHLAFTCSQVYRLEKESLIKEK"
misc_feature complement(179168..179782)
/locus_tag="hp2018_0187"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:31331"
misc_feature complement(179168..179779)
/locus_tag="hp2018_0187"
/note="This family is comprised of MJ0796 ATP-binding
cassette, macrolide-specific ABC-type efflux carrier
(MacAB), and proteins involved in cell division (FtsE),
and release of liporoteins from the cytoplasmic membrane
(LolCDE). They are clustered together...; Region:
ABC_MJ0796_Lo1CDE_FtsE; cd03255"
/db_xref="CDD:73014"
misc_feature complement(179663..179686)
/locus_tag="hp2018_0187"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73014"
misc_feature complement(order(179213..179215,179312..179317,
179525..179527,179660..179668,179672..179677))
/locus_tag="hp2018_0187"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73014"
misc_feature complement(179525..179536)
/locus_tag="hp2018_0187"
/note="Q-loop/lid; other site"
/db_xref="CDD:73014"
misc_feature complement(179360..179389)
/locus_tag="hp2018_0187"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73014"
misc_feature complement(179312..179329)
/locus_tag="hp2018_0187"
/note="Walker B; other site"
/db_xref="CDD:73014"
misc_feature complement(179294..179305)
/locus_tag="hp2018_0187"
/note="D-loop; other site"
/db_xref="CDD:73014"
misc_feature complement(179207..179227)
/locus_tag="hp2018_0187"
/note="H-loop/switch region; other site"
/db_xref="CDD:73014"
gene complement(179779..181056)
/gene="lnt"
/locus_tag="hp2018_0188"
/db_xref="GeneID:12371374"
CDS complement(179779..181056)
/gene="lnt"
/locus_tag="hp2018_0188"
/codon_start=1
/transl_table=11
/product="apolipoprotein N-acyltransferase"
/protein_id="YP_005791001.1"
/db_xref="GI:385231082"
/db_xref="GeneID:12371374"
/translation="MRLILFNQNAFLLACMFVSSVYANAVLDAYAVENPYISIILTSL
LAPLSILAFLKTPRNSAFALGFFVGALLFYWCALSFRYSDFTYLLPLIIVLVALVYGV
LFYLLLYFENPYFRLLSFLGSSFIHPFGFDWLVPDSFFSYSVFRVDKLSLGLIFLACI
FLSAQNLKKYRMIRVLLLLGALDFHFFKTSDLKEVGNVELVSTRTPQDLKFDSNYLNN
IENNILKEIKIAQNKQKTLIVFPETAYPIALENSPFKAKLEDLSDNIAILIGTLRTQG
YSLYNSSFLFSKEGVQIADKVILAPFGEIMPLPKFLQKPLEKLFFGESAYLYRNAPHF
SDFTLDDFIFRPLICYEGTSKAAYSNSPSKIFIVMSNNAWFSPSIEPTLQRTLLKYYA
RRYDKIILHSANFSTSYILSPSLLGDILFRKRS"
misc_feature complement(179797..181056)
/gene="lnt"
/locus_tag="hp2018_0188"
/note="apolipoprotein N-acyltransferase; Reviewed; Region:
PRK12291"
/db_xref="CDD:183409"
misc_feature complement(<179914..180441)
/gene="lnt"
/locus_tag="hp2018_0188"
/note="Nitrilase superfamily, including nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes;
Region: nitrilase; cl11424"
/db_xref="CDD:212622"
misc_feature complement(order(179944..179946,180007..180012,
180145..180147,180157..180159,180169..180171,
180331..180333))
/gene="lnt"
/locus_tag="hp2018_0188"
/note="active site"
/db_xref="CDD:143587"
misc_feature complement(order(180010..180012,180169..180171,
180331..180333))
/gene="lnt"
/locus_tag="hp2018_0188"
/note="catalytic triad [active]"
/db_xref="CDD:143587"
gene 181155..181295
/locus_tag="hp2018_0189"
/db_xref="GeneID:12371375"
CDS 181155..181295
/locus_tag="hp2018_0189"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791002.1"
/db_xref="GI:385231083"
/db_xref="GeneID:12371375"
/translation="MCYYFQISSLKSVNWHDLRMMGVCFKTLRLSLYEIEIMRERFGF
RV"
gene 181292..182002
/locus_tag="hp2018_0190"
/db_xref="GeneID:12371376"
CDS 181292..182002
/locus_tag="hp2018_0190"
/codon_start=1
/transl_table=11
/product="Putative integral membrane protein"
/protein_id="YP_005791003.1"
/db_xref="GI:385231084"
/db_xref="GeneID:12371376"
/translation="MNYIDLALLVVVVAFGIRGFYHGFVSEIAATLGIVLGVYLASRY
SVAVGNLFSEHLYDLRNETMTNLIGFLLVLASIWVFFLALGVLLGKMLVFSGLGIIDK
ALGFIFSCLKTFLVLSFILYALSKMDLMKDANAYLQEKSAIFPTMKSIASKIMRLDGV
KHVEKNLKDNLEEMSDEVKNKKSIDNAKESFNKATDKGVEALKEKAKDLPKNMLEPKH
NKPNQTPPIPTPSNKEPL"
misc_feature 181292..181900
/locus_tag="hp2018_0190"
/note="Uncharacterized membrane protein, required for
colicin V production [General function prediction only];
Region: CvpA; COG1286"
/db_xref="CDD:31477"
misc_feature 181301..181744
/locus_tag="hp2018_0190"
/note="Colicin V production protein; Region: Colicin_V;
pfam02674"
/db_xref="CDD:202343"
gene 182012..183517
/gene="lysS"
/locus_tag="hp2018_0191"
/db_xref="GeneID:12371377"
CDS 182012..183517
/gene="lysS"
/locus_tag="hp2018_0191"
/EC_number="6.1.1.6"
/codon_start=1
/transl_table=11
/product="lysyl-tRNA synthetase"
/protein_id="YP_005791004.1"
/db_xref="GI:385231085"
/db_xref="GeneID:12371377"
/translation="MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAY
VKDLEEPKDKEKCESVVGRVKLLRLMGKACFIKIEDESAILQAYVSQNELNDEFKSLK
KHLEVGDIVLVKGFPFATKTGELSVHAIEFYILSKTIVPLPEKFHGLSDIELRYRQRY
LDLIVNPGVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNA
LEIERYLRIAPELYLKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTY
EDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDALETIGGISKGILEK
EDRLLAYLLERGVKVEPNLTHGKLLAEAFDHFVEHKLINPTFVTEYPIEISPLARRND
SNPNIADRFELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVW
ALAHGMPPTAGQGIGIDRLVMLLTGAKSIKDVILFPAMRPVKNDFNVEGEE"
misc_feature 182021..183481
/gene="lysS"
/locus_tag="hp2018_0191"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysS;
PRK00484"
/db_xref="CDD:179044"
misc_feature 182186..182500
/gene="lysS"
/locus_tag="hp2018_0191"
/note="LysRS_N: N-terminal, anticodon recognition domain
of lysyl-tRNA synthetases (LysRS). These enzymes are
homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs).
This domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop; Region: LysRS_N;
cd04322"
/db_xref="CDD:58592"
misc_feature order(182195..182200,182249..182254,182339..182341,
182417..182419,182426..182434)
/gene="lysS"
/locus_tag="hp2018_0191"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58592"
misc_feature order(182207..182209,182213..182218,182234..182236,
182267..182269,182273..182275,182327..182329,
182369..182371,182387..182389)
/gene="lysS"
/locus_tag="hp2018_0191"
/note="putative anticodon binding site; other site"
/db_xref="CDD:58592"
misc_feature 182507..183481
/gene="lysS"
/locus_tag="hp2018_0191"
/note="Lys_tRNA synthetase (LysRS) class II core domain.
Class II LysRS is a dimer which attaches a lysine to the
3' OH group of ribose of the appropriate tRNA. Its
assignment to class II aaRS is based upon its structure
and the presence of three...; Region: LysRS_core; cd00775"
/db_xref="CDD:29820"
misc_feature 182603..182617
/gene="lysS"
/locus_tag="hp2018_0191"
/note="motif 1; other site"
/db_xref="CDD:29820"
misc_feature order(182699..182701,182765..182767,182771..182773,
182789..182791,182801..182803,183215..183217,
183236..183238,183245..183247,183257..183259,
183413..183415)
/gene="lysS"
/locus_tag="hp2018_0191"
/note="active site"
/db_xref="CDD:29820"
misc_feature 182762..182773
/gene="lysS"
/locus_tag="hp2018_0191"
/note="motif 2; other site"
/db_xref="CDD:29820"
misc_feature 183404..183415
/gene="lysS"
/locus_tag="hp2018_0191"
/note="motif 3; other site"
/db_xref="CDD:29820"
gene 183517..184767
/gene="glyA"
/locus_tag="hp2018_0192"
/db_xref="GeneID:12371378"
CDS 183517..184767
/gene="glyA"
/locus_tag="hp2018_0192"
/EC_number="2.1.2.1"
/codon_start=1
/transl_table=11
/product="Serine hydroxymethyltransferase"
/protein_id="YP_005791005.1"
/db_xref="GI:385231086"
/db_xref="GeneID:12371378"
/translation="MAYFLEQTDSEIFEFIFEEFKRQNEHLEMIASENYTFPSVMEAM
GSILTNKYAEGYPNKRYYGGCEVVDKIESLAIERAKKLFNCQFANVQAHSGTQANNAV
YHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHYQSFSYGVGLDGYIDYEEALKIAQ
SVKPQIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVANEHAHPFPHCH
VVSSTTHKTLRGPRGGLILTNDEEIAAKIDKAIFPGTQGGPLMHAIAAKAVGFKENLK
PEFKAYAKLVKSNMQVLAKTLKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGN
AGITVNKNTIPGETRSPFVTSGIRIGSAALSARGMGAKEFEIIGNKISDILNDINNVS
LQLHVKEELKAMANQFPVYHQPIF"
misc_feature 183517..184749
/gene="glyA"
/locus_tag="hp2018_0192"
/note="serine hydroxymethyltransferase; Reviewed; Region:
PRK13034"
/db_xref="CDD:183853"
misc_feature 183532..184728
/gene="glyA"
/locus_tag="hp2018_0192"
/note="Serine-glycine hydroxymethyltransferase (SHMT).
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl...; Region: SHMT;
cd00378"
/db_xref="CDD:99733"
misc_feature order(183541..183543,183547..183549,183568..183573,
183598..183600,183613..183615,183667..183669,
183721..183726,183748..183750,183793..183795,
183814..183816,183919..183924,184294..184296,
184348..184350)
/gene="glyA"
/locus_tag="hp2018_0192"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99733"
misc_feature order(183610..183612,183670..183672,183700..183702,
183799..183804,183883..183885,184030..184032,
184105..184107,184114..184116,184189..184194,
184210..184212,184588..184590)
/gene="glyA"
/locus_tag="hp2018_0192"
/note="glycine-pyridoxal phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99733"
misc_feature order(183610..183612,183883..183885,184192..184194,
184588..184590)
/gene="glyA"
/locus_tag="hp2018_0192"
/note="active site"
/db_xref="CDD:99733"
misc_feature order(183676..183678,183697..183699,183868..183870,
183880..183882,183886..183888,184270..184272,
184540..184542)
/gene="glyA"
/locus_tag="hp2018_0192"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:99733"
gene 184778..185320
/locus_tag="hp2018_0193"
/db_xref="GeneID:12371379"
CDS 184778..185320
/locus_tag="hp2018_0193"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791006.1"
/db_xref="GI:385231087"
/db_xref="GeneID:12371379"
/translation="MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCYYNKFQRVNAM
LTSSLIQKHLKREIEIAHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFVNF
TAYNTKTPGHLHLYVHKGHTELGEGERLIKTLSMKLAQGLPKEWRIFPSNEWPKEFNI
LALPYEVFAKERGSSWAKHL"
misc_feature 184781..184996
/locus_tag="hp2018_0193"
/note="Domain of unknown function (DUF1882); Region:
DUF1882; pfam08966"
/db_xref="CDD:149893"
misc_feature <185036..185305
/locus_tag="hp2018_0193"
/note="Eukaryotic and archaeal DNA primase small subunit;
Region: DNA_primase_S; pfam01896"
/db_xref="CDD:202033"
gene 185342..186151
/locus_tag="hp2018_0194"
/db_xref="GeneID:12371380"
CDS 185342..186151
/locus_tag="hp2018_0194"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791007.1"
/db_xref="GI:385231088"
/db_xref="GeneID:12371380"
/translation="MSEKERLNEVILEEENNGSGTKKVFLIVAIAIIILAVLLMVFWK
STRVAPKETFLQTDSGMQKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQES
ENSMPIQTDQAQMEMKTTEEKQESQKELKAVEPIPMSAQKESQAVAKKETPHKKPKVA
HKDKEAHKDKATHAAKKEPKVKKEAHKEVSKKANSKTNLTKGHYLQVGVFAHTPNKAF
LQEFNQFPHKIEDRGATKRYLIGPYKSKQEALMHADEVSKKMTKPVVIEVQ"
misc_feature 185942..186139
/locus_tag="hp2018_0194"
/note="Sporulation related domain; Region: SPOR; cl10051"
/db_xref="CDD:186898"
gene complement(186547..187335)
/locus_tag="hp2018_01951"
/db_xref="GeneID:12371381"
CDS complement(186547..187335)
/locus_tag="hp2018_01951"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791008.1"
/db_xref="GI:385231089"
/db_xref="GeneID:12371381"
/translation="MESFIRSYVSDLKNFYQAFLDLLSEIDTNPITLKVMLINKINPR
FFNSLIRLKIDNELDDETLKLFAKTDIVLFKSTRYMQSAAYNLINAYLKKGKKGLKSE
MIAQCRNDIDLAFWQSVNNAYNSSCFHYIFFEKNCQEMGLADLKKLIPEKQFSQEKEH
IIPIDLLKQRLYNKIRDLGFEDEKDLEAYINTYGNLISLEKPLNSKASDKDLYGKDEI
YKESRIPFNRRFNVKGFNKKVLIERNNAMREWLIDTFFKDFATH"
misc_feature complement(186586..187008)
/locus_tag="hp2018_01951"
/note="Protein of unknown function (DUF1524); Region:
DUF1524; pfam07510"
/db_xref="CDD:203659"
gene complement(187299..188087)
/locus_tag="hp2018_01952"
/db_xref="GeneID:12371382"
CDS complement(187299..188087)
/locus_tag="hp2018_01952"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791009.1"
/db_xref="GI:385231090"
/db_xref="GeneID:12371382"
/translation="MVVTKNEDNKKLYDIIDGQQRTTTIFMLLHVLASKQNEKDKQET
RKYLYQKGELKLEVAPQNQSFFKTLLEAAEKENISHCEKDADTEGKQNLFEVLKAILD
KVSKLSGEEVNERLEVLLKMVLMRLEEPDPGRAIRTFQSVNDRGVPLLLLDKLKSLLI
YYSNTFCNGKNGLDQFIIDHFGEIFKIFAKIKKSNHISSVGGPNFDEGDIFRYHAGSQ
RFDGIEFLGHYKASTDSTYEELKDELKKSKKASWKVSSDPMSAI"
misc_feature complement(<187401..188084)
/locus_tag="hp2018_01952"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1479"
/db_xref="CDD:31668"
gene 188405..188938
/locus_tag="hp2018_0196"
/db_xref="GeneID:12371383"
CDS 188405..188938
/locus_tag="hp2018_0196"
/codon_start=1
/transl_table=11
/product="Putative inner membrane protein"
/protein_id="YP_005791010.1"
/db_xref="GI:385231091"
/db_xref="GeneID:12371383"
/translation="MLEKLIERVLFATRWLLAPLCIAMSLVLVVLGYVFMKELWHMLS
HLDTISETDLVLSALGLVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDF
NALKLKVSLSIVAISAIFLLKRYMSLEDVLSSIPKDTPLSHNPIFWQVVIHLVFVCSA
LLAAVTNNIAFSQKERH"
misc_feature 188408..188935
/locus_tag="hp2018_0196"
/note="Uncharacterized protein family, UPF0114; Region:
UPF0114; cl01078"
/db_xref="CDD:242290"
gene complement(188945..190453)
/locus_tag="hp2018_0197"
/db_xref="GeneID:12371384"
CDS complement(188945..190453)
/locus_tag="hp2018_0197"
/codon_start=1
/transl_table=11
/product="Cardiolipin synthetase"
/protein_id="YP_005791011.1"
/db_xref="GI:385231092"
/db_xref="GeneID:12371384"
/translation="MKIFLVILSVFFFNGCFGLVYKTPISNPPISYDPYTTTIGSLYA
KNLKENPNHSAAILLEDGFDALLHRVGLIRMSQKSIDMQTYIYKNDLSSQVIAKELLN
AANRGVKVRILLDDNGLDSDFSDIMLLNFHKNIEVKIFNPYYIRNKGLRYFEMLADYE
RIKKRMHNKLFIVDNFAVIIGGRNIGDNYFDNDLDTNFLDLDALFFGGVASKAKESFE
NYWRFHRSIPVSLLRTHKRLKNNAKEIAKLHEKIPISAEDANEFEKKVNDFIERFQKY
QYPIYYGNAIFLADLPAKIDTPLYSPIKIAFEKALKNAKDSVFIASSYFIPGKKIMKI
FKNQISKGIELNILTNSLSSTDAIVVYGAWERYRNKLVRMGANVYEIRNDFFNRQIKG
RFSTKHSLHGKTIVFDDALTLLGSFNIDPRSAYINTESAVLFDNPSFAKRVRLSLKDH
AQQAWHLVLYRHRVIWEATEEGILIHEKNSPDTSFFLRLIKEWSKVLPEREL"
misc_feature complement(189035..190453)
/locus_tag="hp2018_0197"
/note="Phosphatidylserine/phosphatidylglycerophosphate/car
diolipin synthases and related enzymes [Lipid metabolism];
Region: Cls; COG1502"
/db_xref="CDD:31691"
misc_feature complement(189791..190279)
/locus_tag="hp2018_0197"
/note="Putative catalytic domain, repeat 1, of Escherichia
coli uncharacterized protein ymdC and similar proteins;
Region: PLDc_ymdC_like_1; cd09111"
/db_xref="CDD:197210"
misc_feature complement(order(189854..189856,189902..189904,
189908..189910,189947..189949,189953..189955))
/locus_tag="hp2018_0197"
/note="putative active site [active]"
/db_xref="CDD:197210"
misc_feature complement(189953..189955)
/locus_tag="hp2018_0197"
/note="catalytic site [active]"
/db_xref="CDD:197210"
misc_feature complement(188960..189592)
/locus_tag="hp2018_0197"
/note="Putative catalytic domain, repeat 2, of Escherichia
coli uncharacterized protein ymdC and similar proteins;
Region: PLDc_ymdC_like_2; cd09113"
/db_xref="CDD:197212"
misc_feature complement(order(189167..189169,189200..189202,
189206..189208,189245..189247,189251..189253))
/locus_tag="hp2018_0197"
/note="putative active site [active]"
/db_xref="CDD:197212"
misc_feature complement(189251..189253)
/locus_tag="hp2018_0197"
/note="catalytic site [active]"
/db_xref="CDD:197212"
gene complement(190470..191207)
/locus_tag="hp2018_0198"
/db_xref="GeneID:12371385"
CDS complement(190470..191207)
/locus_tag="hp2018_0198"
/EC_number="1.3.99.1"
/codon_start=1
/transl_table=11
/product="Succinate dehydrogenase iron-sulfur protein"
/protein_id="YP_005791012.1"
/db_xref="GI:385231093"
/db_xref="GeneID:12371385"
/translation="MSDNERTIVVRVLKFDPQSAVSKPHFKEYQLKETPSMTLFIALN
LIREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFESGVITLMPMPSFTL
IKDLSVNTGDWFLDMTKRVESWAHSKEEVDITRPEKRVEPDEAQEVFELDRCIECGCC
IASCGTKLMRPNFIGAAGMNRAMRFMIDSHDERSDDDFYELVGDDDGVFGCMSLIACH
DTCPKELPLQSSIATLRNRMLKVGKSR"
misc_feature complement(190482..191198)
/locus_tag="hp2018_0198"
/note="fumarate reductase iron-sulfur subunit;
Provisional; Region: frdB; PRK13552"
/db_xref="CDD:184136"
misc_feature complement(190866..191180)
/locus_tag="hp2018_0198"
/note="2Fe-2S iron-sulfur cluster binding domain; Region:
Fer2_3; pfam13085"
/db_xref="CDD:205266"
misc_feature complement(<190515..>190883)
/locus_tag="hp2018_0198"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
gene complement(191200..193344)
/locus_tag="hp2018_0199"
/db_xref="GeneID:12371386"
CDS complement(191200..193344)
/locus_tag="hp2018_0199"
/EC_number="1.3.99.1"
/codon_start=1
/transl_table=11
/product="Succinate dehydrogenase flavoprotein subunit"
/protein_id="YP_005791013.1"
/db_xref="GI:385231094"
/db_xref="GeneID:12371386"
/translation="MKITYCDALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHS
AAAQGGMQASLANAKKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELAS
WGVPWTRIKKGDRPAVVNGEHVTITERDDRHGYILSRDFGGTKKWRTCFTADATGHTM
LYAVANEALHHKVDIQDRKDMLAFIHHDNQCYGAVVRDLITGEISAYVSKGTLLATGG
YGRVYKHTTNAVICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDG
GVLRDKFGRRFMPAYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILG
RNHVEKNLRDVRDIAMTFAGIDPADSEEQTKDNMQGAPANEPEYGQAMAKQKGWIPIK
PMQHYSMGGVRTNPKGETHLKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDY
FASHCLEAQIEINTQKVEAFIKESQDYMHFLLHNEGKEDVYEIRERMKEVMDEKVGVF
REGKKLEEALKELQELYARSKNICVKNKVLHNNPELEDAYRTKKMLKLALCITQGALL
RTESRGAHTRIDYPKRDDEKWLNRTLASWPSAEQDMPTIEYEELDVMKMEISPDFRGY
GKKGNFIPHPKKEERDAEILKTILELEKLGKDRIEVQHALMPFELQEKYKARNMRLED
EEVRARGEHLYSFNVHDLLDQHNANLKGEHHE"
misc_feature complement(191293..193344)
/locus_tag="hp2018_0199"
/note="fumarate reductase flavoprotein subunit;
Provisional; Region: PRK08626"
/db_xref="CDD:181507"
misc_feature complement(191830..193266)
/locus_tag="hp2018_0199"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:214164"
misc_feature complement(191473..191865)
/locus_tag="hp2018_0199"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene complement(193354..194121)
/gene="frdC"
/locus_tag="hp2018_0200"
/db_xref="GeneID:12371387"
CDS complement(193354..194121)
/gene="frdC"
/locus_tag="hp2018_0200"
/codon_start=1
/transl_table=11
/product="Fumarate reductase cytochrome b subunit"
/protein_id="YP_005791014.1"
/db_xref="GI:385231095"
/db_xref="GeneID:12371387"
/translation="MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAH
MFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVSVVAAGVILILVAHAFLALRKFP
INYRQYKVFKTHKHLMKHGDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSS
YRFVTQNFWLLYIFLLFAVELHGSIGLYRLAIKWGWFKNVSIQGLRKVKWAMSVFFIV
LGLCTYGAYIKKGLENKDNGIKTMQEAIEADGKFHKE"
misc_feature complement(193357..194115)
/gene="frdC"
/locus_tag="hp2018_0200"
/note="fumarate reductase cytochrome b-556 subunit;
Provisional; Region: PRK13553"
/db_xref="CDD:237423"
misc_feature complement(193429..194046)
/gene="frdC"
/locus_tag="hp2018_0200"
/note="Quinol:fumarate reductase (QFR) Type B subfamily,
transmembrane subunit; QFR couples the reduction of
fumarate to succinate to the oxidation of quinol to
quinone, the opposite reaction to that catalyzed by the
related protein, succinate:quinone...; Region:
QFR_TypeB_TM; cd00581"
/db_xref="CDD:238325"
misc_feature complement(order(193516..193518,193540..193545,
193555..193557,193744..193746,193768..193773,
193780..193782,193822..193824,194041..194043))
/gene="frdC"
/locus_tag="hp2018_0200"
/note="Iron-sulfur protein interface; other site"
/db_xref="CDD:238325"
misc_feature complement(order(193543..193545,193552..193554,
193564..193566,193576..193578,193723..193725,
193744..193746,193831..193833,193840..193845,
194011..194013,194020..194022,194029..194034))
/gene="frdC"
/locus_tag="hp2018_0200"
/note="proximal heme binding site [chemical binding];
other site"
/db_xref="CDD:238325"
misc_feature complement(order(193450..193452,193462..193464,
193606..193608,193636..193638,193645..193647,
193681..193683,193693..193695,193990..193992,
194002..194004))
/gene="frdC"
/locus_tag="hp2018_0200"
/note="distal heme binding site [chemical binding]; other
site"
/db_xref="CDD:238325"
misc_feature complement(order(193609..193611,193621..193626,
193675..193677,193687..193689,193696..193701,
193708..193713,193771..193773,193783..193785,
193795..193797,193825..193830))
/gene="frdC"
/locus_tag="hp2018_0200"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238325"
gene 194330..195034
/gene="tpiA"
/locus_tag="hp2018_0201"
/db_xref="GeneID:12371388"
CDS 194330..195034
/gene="tpiA"
/locus_tag="hp2018_0201"
/EC_number="5.3.1.1"
/codon_start=1
/transl_table=11
/product="triosephosphate isomerase"
/protein_id="YP_005791015.1"
/db_xref="GI:385231096"
/db_xref="GeneID:12371388"
/translation="MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFL
GLLPNAFLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRALLKESPS
FLKEKFDFFKGKNFKIVYCIGEELMTREKGLVAVKEFLSEQLGTIDLNYSNLIVAYEP
IWAIGTKKSASLEDIYLTHGFLKQILNQKTPLLYGGSVNIQNAKEILGIDSVDGLLIG
SASLELENFKTIISFL"
misc_feature 194330..195025
/gene="tpiA"
/locus_tag="hp2018_0201"
/note="triosephosphate isomerase; Provisional; Region:
PRK14567"
/db_xref="CDD:173031"
misc_feature 194336..195025
/gene="tpiA"
/locus_tag="hp2018_0201"
/note="Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually...; Region: TIM; cd00311"
/db_xref="CDD:73362"
misc_feature order(194351..194353,194357..194359,194597..194599,
194804..194806,194822..194824,194918..194920,
194975..194977,194981..194986)
/gene="tpiA"
/locus_tag="hp2018_0201"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73362"
misc_feature order(194351..194353,194360..194362,194456..194464,
194468..194470,194477..194479,194504..194506,
194558..194560,194567..194572,194603..194608)
/gene="tpiA"
/locus_tag="hp2018_0201"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73362"
misc_feature order(194357..194359,194597..194599,194804..194806)
/gene="tpiA"
/locus_tag="hp2018_0201"
/note="catalytic triad [active]"
/db_xref="CDD:73362"
gene 195044..195877
/locus_tag="hp2018_0202"
/db_xref="GeneID:12371389"
CDS 195044..195877
/locus_tag="hp2018_0202"
/EC_number="1.3.1.9"
/codon_start=1
/transl_table=11
/product="Enoyl-acyl-carrier-protein reductase"
/protein_id="YP_005791016.1"
/db_xref="GI:385231097"
/db_xref="GeneID:12371389"
/translation="MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL
EKRVRPIAQELNSPYVYELDVSKEEHFKSLYNNIKKDLGSLDFIVHSVAFAPKEALEG
SLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGL
AKAALESAVRYLAVDLGRHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKN
VSLEEVGNAGMYLLSSLSNGVSGEVHFVDAGYHVMGMGAVEEKDNKATLLWDLQNNKG
Y"
misc_feature 195044..195820
/locus_tag="hp2018_0202"
/note="Enoyl-[acyl-carrier-protein]; Region: FabI;
COG0623"
/db_xref="CDD:30968"
misc_feature 195059..195805
/locus_tag="hp2018_0202"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature order(195080..195088,195098..195103,195161..195163,
195230..195238,195314..195325,195395..195397,
195470..195478,195506..195508,195527..195529,
195605..195616,195620..195631)
/locus_tag="hp2018_0202"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature order(195131..195133,195236..195247,195254..195256,
195350..195370,195377..195382,195389..195394,
195401..195406,195413..195415,195425..195427,
195434..195436,195482..195487,195491..195502,
195506..195511,195518..195523,195530..195535,
195542..195547,195551..195568,195572..195577,
195656..195658,195665..195667,195683..195694,
195710..195712,195719..195724,195731..195733,
195746..195748,195752..195790,195794..195805)
/locus_tag="hp2018_0202"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(195236..195247,195350..195370,195377..195382,
195389..195394,195401..195406,195413..195415,
195422..195427,195434..195436,195482..195487,
195491..195499,195506..195511,195518..195523,
195530..195535,195542..195547,195551..195559,
195563..195571)
/locus_tag="hp2018_0202"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(195320..195322,195326..195328,195476..195478,
195506..195508,195515..195517,195527..195529,
195626..195631,195638..195640,195647..195649)
/locus_tag="hp2018_0202"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(195398..195400,195476..195478,195515..195517,
195527..195529)
/locus_tag="hp2018_0202"
/note="active site"
/db_xref="CDD:187630"
gene 195877..196887
/gene="lpxD"
/locus_tag="hp2018_0203"
/db_xref="GeneID:12371390"
CDS 195877..196887
/gene="lpxD"
/locus_tag="hp2018_0203"
/codon_start=1
/transl_table=11
/product="UDP-3-O-3-hydroxymyristoyl glucosamine
N-acyltransferase"
/protein_id="YP_005791017.1"
/db_xref="GI:385231098"
/db_xref="GeneID:12371390"
/translation="MKLSELLSAYSIETEFSNDFEVHALAELDKATPNDISYIDQVRY
LKLLKDSKAGAVFIRKKESSKVPKSMQALIVDNPHLAFAKVSHAFKIPFFKNPQSVSE
PKHFEKVTIMPNVVIGEGVEIGENSLIYPGVVIADGVKIGKNCILYPRVILYQNTILE
DNVIIHAGSVIGGDGFGYAHTALGEHVKIEHVGIVRIQKNVEIGANTAIDRAVFGETL
IKEGVKIDNLVQIGHNCVLGEHSIVVSQVGLSGSTTTGRNVVFGGQVGIGGHLHVGEF
TQIGGKSAVGKDLPPNTNFAGAIPAMEIHEWHHFLAHLRTNFRKQQKTSLLQKAKGLF
KS"
misc_feature 195889..196848
/gene="lpxD"
/locus_tag="hp2018_0203"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Region: lipid_A_lpxD; TIGR01853"
/db_xref="CDD:162561"
misc_feature 195928..196143
/gene="lpxD"
/locus_tag="hp2018_0203"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:203056"
misc_feature 196195..196800
/gene="lpxD"
/locus_tag="hp2018_0203"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature order(196216..196218,196228..196233,196285..196287,
196324..196326,196330..196332,196336..196338,
196372..196374,196378..196380,196396..196398,
196402..196404,196438..196446,196480..196482,
196492..196494,196498..196500,196504..196506,
196513..196521,196546..196548,196552..196560,
196564..196566,196576..196578,196594..196596,
196600..196602,196612..196620,196648..196650,
196666..196674,196684..196686,196720..196728,
196780..196782,196792..196794)
/gene="lpxD"
/locus_tag="hp2018_0203"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature order(196402..196410,196552..196554,196564..196566,
196573..196578,196606..196611,196624..196632,
196681..196686,196717..196719)
/gene="lpxD"
/locus_tag="hp2018_0203"
/note="active site"
/db_xref="CDD:100043"
misc_feature order(196402..196410,196573..196578,196627..196632,
196681..196686)
/gene="lpxD"
/locus_tag="hp2018_0203"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature order(196552..196554,196564..196566,196606..196611,
196624..196626,196717..196719)
/gene="lpxD"
/locus_tag="hp2018_0203"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene 196953..198110
/gene="metK"
/locus_tag="hp2018_0204"
/db_xref="GeneID:12371391"
CDS 196953..198110
/gene="metK"
/locus_tag="hp2018_0204"
/EC_number="2.5.1.6"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine synthetase"
/protein_id="YP_005791018.1"
/db_xref="GI:385231099"
/db_xref="GeneID:12371391"
/translation="MKDSFLFTSESVTEGHPDKMADQISDAVLDYIIERDKKAKVACE
TLVSNGFCMITGELKTSVYAPMQEIAREVVKKIGYTDALYGFDYRSAAVLNGIGEQSP
DINQGVDREDGEIGAGDQGLMFGYACKETETLMPLPIHLAHQLAFALAQKRKDNILPF
LRPDGKSQVSVRYENNKPVSVDTIVISTQHSPEVSQKHLKEAVIEEIVYKVLPKEYLH
DNIKFFINPTGKFVIGGPQGDAGLTGRKIIVDTYGGFCPHGGGAFSGKDPSKVDRSAA
YAARYVAKNLVASGVCDKATVQLAYAIGVIEPVSIYVNTHNTSKHSSAELEKCVKSVF
KLTPKGIIESLDLLRPIYSLTSAYGHFGRELEEFTWEKTNKVEEIKAFFKR"
misc_feature 196962..198104
/gene="metK"
/locus_tag="hp2018_0204"
/note="S-adenosylmethionine synthetase; Validated; Region:
PRK05250"
/db_xref="CDD:179974"
misc_feature 196962..197258
/gene="metK"
/locus_tag="hp2018_0204"
/note="S-adenosylmethionine synthetase, N-terminal domain;
Region: S-AdoMet_synt_N; pfam00438"
/db_xref="CDD:201226"
misc_feature 197289..197645
/gene="metK"
/locus_tag="hp2018_0204"
/note="S-adenosylmethionine synthetase, central domain;
Region: S-AdoMet_synt_M; pfam02772"
/db_xref="CDD:202384"
misc_feature 197649..198068
/gene="metK"
/locus_tag="hp2018_0204"
/note="S-adenosylmethionine synthetase, C-terminal domain;
Region: S-AdoMet_synt_C; pfam02773"
/db_xref="CDD:111646"
gene 198177..198590
/gene="ndk"
/locus_tag="hp2018_0205"
/db_xref="GeneID:12371392"
CDS 198177..198590
/gene="ndk"
/locus_tag="hp2018_0205"
/EC_number="2.7.4.6"
/codon_start=1
/transl_table=11
/product="nucleoside diphosphate kinase"
/protein_id="YP_005791019.1"
/db_xref="GI:385231100"
/db_xref="GeneID:12371392"
/translation="MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVK
DAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTI
RADFAESIDANAVHGSDSLENAHNEIAFFFAAREL"
misc_feature 198183..198572
/gene="ndk"
/locus_tag="hp2018_0205"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:58528"
misc_feature order(198204..198206,198324..198326,198348..198350,
198432..198434,198450..198452,198483..198485,
198513..198515,198522..198524,198528..198533,
198555..198557)
/gene="ndk"
/locus_tag="hp2018_0205"
/note="active site"
/db_xref="CDD:58528"
misc_feature order(198216..198218,198231..198239,198246..198248,
198255..198257,198282..198290)
/gene="ndk"
/locus_tag="hp2018_0205"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:58528"
gene 198615..198971
/locus_tag="hp2018_0206"
/db_xref="GeneID:12371393"
CDS 198615..198971
/locus_tag="hp2018_0206"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791020.1"
/db_xref="GI:385231101"
/db_xref="GeneID:12371393"
/translation="MQFEMRKIAFNAPKVFSLEHEGVVLEGEIVRVGAKLFRLKVQLR
GELMLICDTSGKEFKKSLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEI
LRSEVESIKLDYHYAD"
misc_feature 198729..>198935
/locus_tag="hp2018_0206"
/note="Uncharacterized ACR, COG1399; Region: DUF177;
cl00616"
/db_xref="CDD:241985"
gene 198987..199133
/locus_tag="hp2018_0207"
/db_xref="GeneID:12371394"
CDS 198987..199133
/locus_tag="hp2018_0207"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L32"
/protein_id="YP_005791021.1"
/db_xref="GI:385231102"
/db_xref="GeneID:12371394"
/translation="MAVPDRRVSKTRAAKRRTHYSVKLAKPVKAKDGTWKLPHHINKF
TKEY"
misc_feature 198987..199130
/locus_tag="hp2018_0207"
/note="Ribosomal protein L32 [Translation, ribosomal
structure and biogenesis]; Region: RpmF; COG0333"
/db_xref="CDD:223410"
gene 199211..200230
/gene="plsX"
/locus_tag="hp2018_0208"
/db_xref="GeneID:12371395"
CDS 199211..200230
/gene="plsX"
/locus_tag="hp2018_0208"
/codon_start=1
/transl_table=11
/product="Phosphate:acyl-ACP acyltransferase"
/protein_id="YP_005791022.1"
/db_xref="GI:385231103"
/db_xref="GeneID:12371395"
/translation="MKIVIDLMGADHGVLPIIEGVSRALENKSFSVVLVGDKDKATPF
ISKELASKVEMIHTQDYIKMEEAATEAIKRKESSIYLGMDILKNGADALISAGHSGAT
MGLATLRLGRIKGVERPAICTLMPSVGKRPSVLLDAGANTDCKPEYLIDFALMGYEYA
KSVLHYDSPKVGLLSNGEEYIKGNTLVKETHKMLKAYDFFYGNVEGSDIFKGVVDVVV
CDGFMGNVVLKTTEGVASAIGSIFKDEIKSSFKSKMGALMLKNAFGILKQKTDYAEYG
GAPLLGVNKSVIISHGKSNARAIECAIYQAISAVESQVCLRITKAFESLKSQSFESQS
DQQDA"
misc_feature 199211..200185
/gene="plsX"
/locus_tag="hp2018_0208"
/note="putative phosphate acyltransferase; Provisional;
Region: PRK05331"
/db_xref="CDD:180021"
gene 200254..201249
/gene="fabH"
/locus_tag="hp2018_0209"
/db_xref="GeneID:12371396"
CDS 200254..201249
/gene="fabH"
/locus_tag="hp2018_0209"
/EC_number="2.3.1.41"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP synthase"
/protein_id="YP_005791023.1"
/db_xref="GI:385231104"
/db_xref="GeneID:12371396"
/translation="MEFYASLKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKER
RFANDEEKSSDLGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG
IENKPAFDISAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILF
GDGAGACVIGRTKRLKESVLDVQISANGNFSNYLYTPRTLKPTPFNAKEEALEPFLRM
KGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQV
VLTVHKYGNTSAASIPMAMCEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFGGS"
misc_feature 200260..201237
/gene="fabH"
/locus_tag="hp2018_0209"
/note="3-oxoacyl-(acyl-carrier-protein) synthase III;
Region: fabH; TIGR00747"
/db_xref="CDD:162020"
misc_feature 200263..201231
/gene="fabH"
/locus_tag="hp2018_0209"
/note="Ketoacyl-acyl carrier protein synthase III (KASIII)
initiates the elongation in type II fatty acid synthase
systems. It is found in bacteria and plants. Elongation of
fatty acids in the type II systems occurs by Claisen
condensation of malonyl-acyl...; Region: KAS_III; cd00830"
/db_xref="CDD:29417"
misc_feature order(200500..200502,200506..200508,200536..200538,
200545..200547,200569..200589,200611..200613,
200620..200625,200632..200637,200692..200694,
200803..200820,200836..200841,201205..201207)
/gene="fabH"
/locus_tag="hp2018_0209"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29417"
misc_feature order(200596..200598,201016..201018,201106..201108)
/gene="fabH"
/locus_tag="hp2018_0209"
/note="active site"
/db_xref="CDD:29417"
misc_feature 201025..201027
/gene="fabH"
/locus_tag="hp2018_0209"
/note="CoA binding pocket [chemical binding]; other site"
/db_xref="CDD:29417"
gene 201273..201575
/locus_tag="hp2018_0210"
/db_xref="GeneID:12371397"
CDS 201273..201575
/locus_tag="hp2018_0210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791024.1"
/db_xref="GI:385231105"
/db_xref="GeneID:12371397"
/translation="MKKVVFLLLVMLGGLEAQSDYCSDHCEGTPDSRIPPMGFHFSFV
HSVKYYLQDPQERNHKLEKCHKAFDSTLKVNFITKSFKKDCKHAQMALEQAQKETP"
gene complement(202256..202639)
/locus_tag="hp2018_0211"
/db_xref="GeneID:12371398"
CDS complement(202256..202639)
/locus_tag="hp2018_0211"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791025.1"
/db_xref="GI:385231106"
/db_xref="GeneID:12371398"
/translation="MFKKMCLSLLMIGGVYVGAKDLDFKLDYRATGGKLMGKMTDSSL
LSITSMNDEPVVIKNLIVNRGNSCEATKKVEPKFGDKFKKEKLFDHELKYSQQIFYRL
DCKPNQLLEVKIITDKGEYYHKFSK"
gene complement(202639..205692)
/locus_tag="hp2018_0212"
/db_xref="GeneID:12371399"
CDS complement(202639..205692)
/locus_tag="hp2018_0212"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791026.1"
/db_xref="GI:385231107"
/db_xref="GeneID:12371399"
/translation="MKLHKRVLKLHHFRNLGRNSPTKLLLNSSFDEKHGGLVVLVVEN
NVGKSNVLEALTIFNDADIKLCSKEDYFKDHEKDTLLSLEEETSLDHKITDFSCVDLR
IQSKEVNHNLKELSKTLIVYPFSAFIGEFIKLVMSYGILDSFLKFYKEKLKLSAFATR
QADNLLFKKLIKHLSGNNQLVKNFCQCIREIIKYNAPNKEYKPNQFFIIGKGKQKQLS
KIYSHFKKLSEGEIKPQNEGILKKLKSLDEIFKTTDFTRFTPKTEIKDIIKEIDEKYP
INENFKRQFRTFRSSIGNLKKKINSLKYLEKTREDFERKKESWIKEIGNDCKNECNSE
EEPEYKINDLLKNIQQICKNYIESHAVNDVSKDIKSMMCQFYLKQIDLLVNSEIVRYR
YSNLFEPIQRSLWESIKILDNESGIYLFPKNIGEIKDKFEANKEKFKQSKNVSEFAEY
CRECNPYTAFNFHLNINNGLSHQFEKFVPIMKEYKEPKITDNDLEAISTKETGLASQL
SGHWFFQLSLFNKTNFNPNKIWIPLEFNKRSKIKFDKDLEIYFDSHESFNISKKYLQE
IDQESLKKIKQSKDFFPIQKIESKHDNNDILQLEFFENDTSFLFAKGSFAEILEYNMQ
LKIDSLITKEFNKLLAIVQDSPQDSYQLKIRVRHNNKFYDYSKKSTAYEIKLEVYDCR
KSDNQNEPIILSQQSTGFQWAFNFMFGFLYNWGSHFSLNKNIIYVMDEPATHLSVPAR
KEFRKFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIVEKETEGSAIKNNFNYPLNN
ASKDSDAPDKIKRSLGVGQHVFHNPQKHRIIFVEGITDYCYLSAFKLYFNKHNPQFKD
NPIPFAFLPISGLKKVSNDMKETIQKLCELDNHPIVLIDDDRKCVFNQKATSERFKKA
NEDLGNPITILQLSDCDRHFKQIEDCFSTNDRNKYTKNKRMELAMAFKTRLLYGGKDA
ITEETKNNFLCLFEWMKKGCNNPTIKKGYIKFDYNTPQILLLKGF"
misc_feature complement(203389..>204075)
/locus_tag="hp2018_0212"
/note="AAA ATPase domain; Region: AAA_15; pfam13175"
/db_xref="CDD:205356"
misc_feature complement(203398..>203520)
/locus_tag="hp2018_0212"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(203503..203520)
/locus_tag="hp2018_0212"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(203485..203496)
/locus_tag="hp2018_0212"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(203398..203418)
/locus_tag="hp2018_0212"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 205793..206899
/locus_tag="hp2018_0213"
/db_xref="GeneID:12371400"
CDS 205793..206899
/locus_tag="hp2018_0213"
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
/protein_id="YP_005791027.1"
/db_xref="GI:385231108"
/db_xref="GeneID:12371400"
/translation="MLTQEDVLNALKTIIYPNFEKDIVSFGFVKNITLHDDQLGLLIE
IPSSSEETSAILRENISKAMQEKGVKALNLDIKTPPKPQAPKPTTKNLAKNIKHVVMI
SSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQNADVIMDPSGKK
LIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDIIWGDLDVLVVDMPPGT
GDAQLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHIPIAGIVENMGSFVCEH
CKKESEIFGSNSMSGLLETYHTQILAKLPLEPKVRLGGDKGEPIVISHPDSVSAKIFE
KMAQDLSVFLDKVEREKLADNKDIQPTQTHAYSH"
misc_feature 205802..206815
/locus_tag="hp2018_0213"
/note="antiporter inner membrane protein; Provisional;
Region: PRK11670"
/db_xref="CDD:183270"
misc_feature 205805..205990
/locus_tag="hp2018_0213"
/note="Domain of unknown function DUF59; Region: DUF59;
pfam01883"
/db_xref="CDD:202026"
misc_feature 206141..206716
/locus_tag="hp2018_0213"
/note="MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions...; Region:
MRP-like; cd02037"
/db_xref="CDD:73300"
gene complement(206979..208013)
/locus_tag="hp2018_02141"
/db_xref="GeneID:12371401"
CDS complement(206979..208013)
/locus_tag="hp2018_02141"
/codon_start=1
/transl_table=11
/product="putative lipopolysaccharide biosynthesis
protein"
/protein_id="YP_005791028.1"
/db_xref="GI:385231109"
/db_xref="GeneID:12371401"
/translation="MVEDLSAENVAKLEETIAPFSAFSSIEFLDITLSSEKLEPRHNH
YKLDVLIANEIKKLYLKLHSFSQKRFSKMIMCRFFFASLFPQYDKMIMFDADTLFVND
MSESFFIPLETHYFGAVREKDLIAMDRNSAKDLYELRQMRAKTIGVADAFPNLEEAQI
LFDNYFNAGFLALNLKLWREENLENQLIAFFILKNEKLLFSDQDALCFVCRGRILELP
YSYNAHPSFLDTPLFPSIKEARMLHFWGDKPWKLLSVIGAKKWHEILIQTPFKDAYFN
APFLDRLFESLQNKDKETQEIHAFNKALSFSDKRYSFEFLLPRLSSKLLVGFSLFKIK
RKVKRLVKKC"
misc_feature complement(207021..208010)
/locus_tag="hp2018_02141"
/note="Lipopolysaccharide biosynthesis proteins,
LPS:glycosyltransferases [Cell envelope biogenesis, outer
membrane]; Region: RfaJ; COG1442"
/db_xref="CDD:31631"
misc_feature complement(207261..208007)
/locus_tag="hp2018_02141"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
gene complement(208037..208144)
/locus_tag="hp2018_02142"
/db_xref="GeneID:12371402"
CDS complement(208037..208144)
/locus_tag="hp2018_02142"
/codon_start=1
/transl_table=11
/product="putative lipopolysaccharide biosynthesis
protein"
/protein_id="YP_005791029.1"
/db_xref="GI:385231110"
/db_xref="GeneID:12371402"
/translation="MQEIIPIVVAFDNNYCIPAGVSLYSMLAHAKRERE"
misc_feature complement(<208043..208138)
/locus_tag="hp2018_02142"
/note="Lipopolysaccharide biosynthesis proteins,
LPS:glycosyltransferases [Cell envelope biogenesis, outer
membrane]; Region: RfaJ; COG1442"
/db_xref="CDD:31631"
misc_feature complement(<208043..208132)
/locus_tag="hp2018_02142"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
gene 208167..208286
/locus_tag="hp2018_0215"
/db_xref="GeneID:12371403"
CDS 208167..208286
/locus_tag="hp2018_0215"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791030.1"
/db_xref="GI:385231111"
/db_xref="GeneID:12371403"
/translation="MNPLKKGVICNLIVFFFFKTKMVSLFYGIISDFNKKGVW"
gene 208292..209644
/locus_tag="hp2018_0216"
/db_xref="GeneID:12371404"
CDS 208292..209644
/locus_tag="hp2018_0216"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_005791031.1"
/db_xref="GI:385231112"
/db_xref="GeneID:12371404"
/translation="MLNQKVWLGFLALHGVFLSAFEYQVSARVGSFSRIALNQSIINS
KKGIYPTGSYVTTTGALQIDVSLLPKGIENHKLGFGVGGEIGALAYDSTKFLIDEANP
KAGFQPANWYYMGRWEGYLMQHSQNWTREQKAQNARPYVLYNLYLDYQYKDIFGIKLG
RYPSKALFLSGFNQGFELFYRWKKFRIEWFSTFGRALANEQYIRDFYAPVNYKQKINY
GMHNFNLIYENKYIGVVPFIWFYPKNFNAPGFEITHDTKSYWKSLWRIQTTFYAWFPL
YSDYLSKDYYRAALVGKKSASLFVFQRINFRSYRFGWSVYKNFGNASVQLGWNGSPID
PFYDTKDDTPYEDAYSNFYNANSITINAFVGKSIKNLLVQLYGKLTYSPRADAQSLGV
TLKYNIKKHIYFMLMFNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYFMSSMSYRF
"
misc_feature 208292..209641
/locus_tag="hp2018_0216"
/note="Putative outer membrane protein; Region: HP_OMP_2;
pfam02521"
/db_xref="CDD:145585"
gene 209747..211612
/gene="htpG"
/locus_tag="hp2018_0217"
/db_xref="GeneID:12371405"
CDS 209747..211612
/gene="htpG"
/locus_tag="hp2018_0217"
/codon_start=1
/transl_table=11
/product="Chaperone protein"
/protein_id="YP_005791032.1"
/db_xref="GI:385231113"
/db_xref="GeneID:12371405"
/translation="MSNQEYTFQTEINQLLDLMIHSLYSNKEIFLRELISNASDALDK
LNYLMLTDEKLKGLNTTPSIHLSFDSQKKTLTIKDNGIGMDKSDLIEHLGTIAKSGTK
SFLSALSGDKKKDSALIGQFGVGFYSAFMVASKIVVQTKKVTSEQAYAWVSDGKGKFE
ISECVKEEQGTEITLFLKEEDSHFASRWEIDSVVKKYSEHIPFPIFLTYTDTKFEGEG
DNKKEIKEEKCDQINQASALWKMNKSELKEKDYKDFYQSFAHDNSEPLSYIHNKVEGS
LEYTTLFYIPSKAPFDLFRVDYKSGVKLYVKRVFITDDDKELLPSYLRFIKGVIDSED
LPLNVSREILQQNKILANIRSASVKKILSEIERLSKDNKNYHKFYEPFGKVLKEGLYG
DFENKEKLLELLRFYSKDKGEWISLKEYKENLKENQKSIYYLLGENLDLLKASPILEK
YAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFRDASHSESLKELGLEEIHDEVKDQFKD
LIKAFEENLKDEIKGVELSNHLTSAVALIGDEPNAMMANWMRQMGQSVPESKKTLELN
PNHAILQKLLKCEDKEQLSAFIWLLYDGAKLLEKGALKDAKSFNERLNSVLLKAL"
misc_feature 209747..211609
/gene="htpG"
/locus_tag="hp2018_0217"
/note="heat shock protein 90; Provisional; Region:
PRK05218"
/db_xref="CDD:179965"
misc_feature 209828..>210145
/gene="htpG"
/locus_tag="hp2018_0217"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(209843..209845,209855..209857,209864..209866,
209975..209977,209981..209983,209987..209989,
209993..209998,210113..210124)
/gene="htpG"
/locus_tag="hp2018_0217"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 209855..209857
/gene="htpG"
/locus_tag="hp2018_0217"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(209987..209989,209993..209995,210113..210115,
210119..210121)
/gene="htpG"
/locus_tag="hp2018_0217"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(211803..212555)
/locus_tag="hp2018_0218"
/db_xref="GeneID:12371406"
CDS complement(211803..212555)
/locus_tag="hp2018_0218"
/codon_start=1
/transl_table=11
/product="putative beta-lactamase hcpA precursor"
/protein_id="YP_005791033.1"
/db_xref="GI:385231114"
/db_xref="GeneID:12371406"
/translation="MLGSVKKTLFGVLCLGALCLRGLMAEPDAKELVNLGIESVKKQD
FAQAKEHFEKACELKEGFGCVFLGAFYEEGKGVRKDLKKAIQFYTKGCELNDGYGCRL
LGNLYYNGQGVSKDAKKASQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDLY
EKACDLKDSPGCINAGYMYGVAKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA
KDEKQAVENFKKGCKSSVKEACDALKELKIEL"
misc_feature complement(211812..212522)
/locus_tag="hp2018_0218"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature complement(212268..212369)
/locus_tag="hp2018_0218"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(212160..212267)
/locus_tag="hp2018_0218"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(212052..212159)
/locus_tag="hp2018_0218"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(211857..211949)
/locus_tag="hp2018_0218"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(212599..212712)
/locus_tag="hp2018_0219"
/db_xref="GeneID:12371407"
CDS complement(212599..212712)
/locus_tag="hp2018_0219"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791034.1"
/db_xref="GI:385231115"
/db_xref="GeneID:12371407"
/translation="MAIQLKRWNALKREAILNHFLYFTNKMAFNKALIVNI"
gene complement(212996..214162)
/gene="dapE"
/locus_tag="hp2018_0220"
/db_xref="GeneID:12371408"
CDS complement(212996..214162)
/gene="dapE"
/locus_tag="hp2018_0220"
/EC_number="3.5.1.18"
/codon_start=1
/transl_table=11
/product="N-succinyl-L,L-diaminopimelate desuccinylase"
/protein_id="YP_005791035.1"
/db_xref="GI:385231116"
/db_xref="GeneID:12371408"
/translation="MNALEITQKLISYPTITPKECGIFEYIKSLFPAFKTLECGENGV
KNLFLYRIFNPPKDHAEEKHAKAKHAKEDTKPLHFCFAGHIDVVPPGNNWQSDPFKPI
IKEGFLYGRGAQDMKGGVGAFLSASLNFDPKTPFMLSVLLTSDEEGSGIFGTRLMLEK
LKEKDLLPHMAIVAEPTCEKILGDSIKIGRRGSINGKLILKGVQGHVAYPQKCQNPID
ALASVLPLISGVHLDNGDECFDPSKLVITNLHAGLGANNVTPGSIEIVFNARHSLKTT
QESLKEYLEKVLKDLPHTLELESSSSPFITASHSKLTSVLKENILKTCHTTPLLNTKG
GTSDARFFSAHGIEVVEFGTINDRIHAVDERVSLKELELLEKVFLGVLENLSEK"
misc_feature complement(213062..214162)
/gene="dapE"
/locus_tag="hp2018_0220"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK13009"
/db_xref="CDD:183838"
misc_feature complement(213062..214153)
/gene="dapE"
/locus_tag="hp2018_0220"
/note="M20 Peptidase proteobacterial DapE encoded
N-succinyl-L,L-diaminopimelic acid desuccinylase; Region:
M20_DapE_proteobac; cd03891"
/db_xref="CDD:193511"
misc_feature complement(order(213083..213085,213638..213640,
213722..213727,213818..213820,213911..213913))
/gene="dapE"
/locus_tag="hp2018_0220"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193511"
misc_feature complement(order(213161..213163,213353..213355,
213359..213361,213383..213388,213407..213430,
213434..213436,213479..213481,213488..213493,
213497..213502,213509..213514,213518..213520,
213536..213547,213578..213580))
/gene="dapE"
/locus_tag="hp2018_0220"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193511"
gene complement(214173..216038)
/gene="gidA"
/locus_tag="hp2018_0221"
/db_xref="GeneID:12371409"
CDS complement(214173..216038)
/gene="gidA"
/locus_tag="hp2018_0221"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme"
/protein_id="YP_005791036.1"
/db_xref="GI:385231117"
/db_xref="GeneID:12371409"
/translation="MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLAS
CNPAIGGLGKGHLTKEVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTY
RIFARNLVLNTPNLSVSQEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGV
VHIGEHQNQNGRFGENASNSLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFG
DANPPYFSYKTKDFNPTQLSCFITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPS
IEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEKVIHSIKGLENALIT
RYGYAIEYDFIQPTELTHALETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLAL
KNQTPFILKRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAY
RLGLMEQDFYEELKKDQQAIQENLKRLKECVLTPSKEVLKRLSELDENPINDKMDGVS
LLARDSFNAEKMRSFFSFLAPLNERVLEQIKIECKYNIYIEKQHENIAKMDSMLKVSI
PKHFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS"
misc_feature complement(214182..216026)
/gene="gidA"
/locus_tag="hp2018_0221"
/note="glucose-inhibited division protein A; Region: gidA;
TIGR00136"
/db_xref="CDD:129242"
misc_feature complement(<215847..216020)
/gene="gidA"
/locus_tag="hp2018_0221"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(214806..>215129)
/gene="gidA"
/locus_tag="hp2018_0221"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(214206..214412)
/gene="gidA"
/locus_tag="hp2018_0221"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene 216134..217780
/locus_tag="hp2018_0222"
/db_xref="GeneID:12371410"
CDS 216134..217780
/locus_tag="hp2018_0222"
/codon_start=1
/transl_table=11
/product="sodium-dependent transporter:huNaDC-1"
/protein_id="YP_005791037.1"
/db_xref="GI:385231118"
/db_xref="GeneID:12371410"
/translation="MENHLHADTNTDDKSTKIVRLFGLIGGALIALIIYYALDAQMPH
IVEEIPKLSSLNYKAMPVVAGVAVLMGIWWMTEAIDLPATALLPLVLFSVFSVDQFAS
VSSSYASPIIFLFMGGFILALSMQKWNLHTRIALSIILLVGTSPRRLILGFMIATGFL
SMWVSNTATAVMMFPVGMSVLQLVAKLVGKENASNAFYQKEEITKAHGGIMGNIVHKG
KDIAQVIQEKTTIYRTNFSICLMLGIAYSASIGSLGTLIGTPPNALLAGYMKTAFNIE
IDFAQWMVFGTPLAFIMLILSWLLLTYVIFPLKIKEIPGGKEVVKLELNKLGRLSQAE
ISVGVIFILASLGWIFLDTILKSWGIKIDKIDSVIAMGVSALLFILPANNQGDRLIDW
GVAKKLPWDVLLLFGGGLALSAQFSKTGLSLWIGHLVSGFSHLPILFIIVMVTLMVIF
LTEITSNTATAAAFLPVIGGVAMGMGYENHQSLLLTIPVALSATCAFMLPVATPPNAI
AYGSGYVKITDMIKAGLWLNLVGVVLISSFSYCLVSLIFN"
misc_feature 216320..217774
/locus_tag="hp2018_0222"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:30819"
misc_feature 216323..217753
/locus_tag="hp2018_0222"
/note="Permease SLC13 (solute carrier 13). The
sodium/dicarboxylate cotransporter NaDC-1 has been shown
to translocate Krebs cycle intermediates such as
succinate, citrate, and alpha-ketoglutarate across plasma
membranes rabbit, human, and rat kidney. It is...; Region:
SLC13_permease; cd01115"
/db_xref="CDD:73247"
misc_feature order(216344..216355,216374..216415,216458..216511,
216581..216631,216635..216661,216671..216697,
216845..216916,216980..217024,217037..217063,
217169..217180,217217..217261,217325..217381,
217451..217498,217550..217561,217571..217618,
217706..217744)
/locus_tag="hp2018_0222"
/note="transmembrane helices; other site"
/db_xref="CDD:73247"
gene 217793..218593
/locus_tag="hp2018_0223"
/db_xref="GeneID:12371411"
CDS 217793..218593
/locus_tag="hp2018_0223"
/EC_number="2.7.7.41"
/codon_start=1
/transl_table=11
/product="phosphatidate cytidylyltransferase"
/protein_id="YP_005791038.1"
/db_xref="GI:385231119"
/db_xref="GeneID:12371411"
/translation="MKEELFKEKSRYITGVVLIVVAGLILYADNLLLFWAVLGGIYAV
GFFEALRLFQVKASFSLYLILVLSWVAAYFNGHPVECALISAMVMASVIAYQKAHHSE
AILPFLYPGVGFFALFGVYKDFGAVAIIWLLVVVVASDVGAFFGGKLLGKTPFTATSP
NKTLEGALIGVVLASVLGSFVGMGKLSGGFLMALLFSFLIALMAVFGDLYESYLKRKV
GIKDSGKILPGHGGVLDRLDSMLFGALSLHALLYFLEIWKETAVFLGD"
misc_feature 217886..218554
/locus_tag="hp2018_0223"
/note="Cytidylyltransferase family; Region: CTP_transf_1;
pfam01148"
/db_xref="CDD:110170"
gene 218594..219700
/locus_tag="hp2018_0224"
/db_xref="GeneID:12371412"
CDS 218594..219700
/locus_tag="hp2018_0224"
/EC_number="1.1.1.267"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="YP_005791039.1"
/db_xref="GI:385231120"
/db_xref="GeneID:12371412"
/translation="MVVLGSTGSIGKNALKIAKKFGVKIEALSCGKNIALINEQIQIF
KPKKVAILDPNDLNNLEPLGAEVFVGLDGIDAMIEECTSNLVINAIVGVAGLKASFKS
LQRNKKLALANKESLVSAGHLLDISQITPVDSEHFGLWALLQNKTLKPKSLIISASGG
AFRDTPLDLIAIQNAQNALKHPNWSMGDKITIDSASMVNKLFEILETYWLFGTSLKID
ALIERSSIVHALVEFEDNSVIAHLASADMKLPISYAINPKLASLNASIKPLDLYALSA
IKFEPISMERYTLWRYKDLLLENPKLGVVLNASNEVAMKKFLNQEIAFGGFIQIISQA
LELYAKKSFKLSTLDEVLALDKEVRERFGSVARV"
misc_feature 218594..219697
/locus_tag="hp2018_0224"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: Dxr; TIGR00243"
/db_xref="CDD:161787"
misc_feature 218594..218956
/locus_tag="hp2018_0224"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:202340"
misc_feature 218978..219226
/locus_tag="hp2018_0224"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature 219320..219673
/locus_tag="hp2018_0224"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:205468"
gene 219752..220909
/locus_tag="hp2018_0225"
/db_xref="GeneID:12371413"
CDS 219752..220909
/locus_tag="hp2018_0225"
/codon_start=1
/transl_table=11
/product="Beta-1,4-N-acetylgalactosaminyltransferase"
/protein_id="YP_005791040.1"
/db_xref="GI:385231121"
/db_xref="GeneID:12371413"
/translation="MGLKNKIKGFVKERMPFIMRCVRGLKGAKNAHESAHDRDAHCGI
NHEIKEMLEAKKLHSLQEKALFNHDHQESVFLAIASLNNESFIERNRSIYKNSSLNYN
YGGGGEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLF
SMLPAVQRGVIGFNNCDDGSKEVVLEFCKKFPSFIPISYPYEVILKDCPSLWHQFYHY
CNYTLSFIPKNEWVVKIDCDHIYDAKKLYESFYIPKNIKEVVMYSRINFVVRDFEVFV
RNDGDCGFLDAWGDHWLLYNDCEPFEIWRYNDESYEVLKLKDKHHIKDKEMVQWHFPL
AKKRRNAIVYDDLIPLKEFKKRHADLIGTRIEESMLDEKRILEVYQKFRLL"
misc_feature 220118..220897
/locus_tag="hp2018_0225"
/note="Beta-1,4-N-acetylgalactosaminyltransferase (CgtA);
Region: CgtA; pfam06306"
/db_xref="CDD:114995"
gene complement(220979..221590)
/locus_tag="hp2018_0226"
/db_xref="GeneID:12371414"
CDS complement(220979..221590)
/locus_tag="hp2018_0226"
/codon_start=1
/transl_table=11
/product="phospholipid-binding protein"
/protein_id="YP_005791041.1"
/db_xref="GI:385231122"
/db_xref="GeneID:12371414"
/translation="MCFYDHATIKENDFKEKGLKMKTFEVMIQTDSQGYLDAKFGGNA
PRGFLNPNGLPTYSPKISWQKVEGAKSYALELIDHDAQKVCGMPFVHWVVGNISYNVL
EENASMMDKRIVQGVNSLTQGFIRSSLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQV
YALDIPKLELKAPFFLGDLHDKMRNHIIAIGRKEFLYKQFVRK"
misc_feature complement(221000..221470)
/locus_tag="hp2018_0226"
/note="PhosphatidylEthanolamine-Binding Protein (PEBP)
domain present in bacteria and archaea; Region:
PEBP_bact_arch; cd00865"
/db_xref="CDD:176643"
misc_feature complement(order(221123..221125,221129..221131,
221135..221137,221141..221155,221318..221320,
221324..221326,221354..221359))
/locus_tag="hp2018_0226"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176643"
gene 221692..222135
/locus_tag="hp2018_0227"
/db_xref="GeneID:12371415"
CDS 221692..222135
/locus_tag="hp2018_0227"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791042.1"
/db_xref="GI:385231123"
/db_xref="GeneID:12371415"
/translation="MSAKIDALLEQQKKVISLLETYLSVYSTPQEASNKLFKGISQGM
ELAPEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNIPKPIIVTALY
NLKGIKPTKKEVAKQLQKLYVWERRYQQGGIDALKDRRGRPLKKP"
misc_feature <222019..222120
/locus_tag="hp2018_0227"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
gene 222303..223466
/locus_tag="hp2018_0228"
/db_xref="GeneID:12371416"
CDS 222303..223466
/locus_tag="hp2018_0228"
/EC_number="2.8.1.7"
/codon_start=1
/transl_table=11
/product="cysteine desulfurase"
/protein_id="YP_005791043.1"
/db_xref="GI:385231124"
/db_xref="GeneID:12371416"
/translation="MLQRIYLDNNATTRIDPKVKEIMDPFLRDHYGNPSSLHQFGTET
HPAIAEALDKLYKGINARDIDDVIITSCATESNNWVLKGVYFDECLKKGKNHIITTVA
EHPAVRSTCNFLESLGVEVTYLPINEHGSITADQVKEAITEKTALVSVMWANNETGLI
FPIEEIGAICKEKGVLFHTDAVQAIGKIPVDVLKANVDFLSFSAHKFHGPKGIGGLYI
RSGVGLTPLFHGGEHMNGRRSGTLNVPYIVGMGEAMKLAVEHLDYEKEVVGKLRDKLE
EALLKIPDVMVVGDRVHRVPNTTLISVRGIEGEAMLWDLNRSNIAASTGSACASEDLE
ANPVMVAIGASKELAHTAIRLSLSRFNTEAEIDKTIEVFSQAAVRLRNISSSY"
misc_feature 222315..223460
/locus_tag="hp2018_0228"
/note="cysteine desulfurase, NifS family, epsilon
proteobacteria type; Region: nifS_epsilon; TIGR03403"
/db_xref="CDD:132444"
misc_feature 222315..223454
/locus_tag="hp2018_0228"
/note="cysteine desulfurase NifS; Region: FeS_nifS;
TIGR03402"
/db_xref="CDD:132443"
misc_feature order(222519..222524,222531..222533,222756..222758,
222840..222842,222849..222851,222909..222911,
222918..222920)
/locus_tag="hp2018_0228"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 222918..222920
/locus_tag="hp2018_0228"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 223488..224468
/locus_tag="hp2018_0229"
/db_xref="GeneID:12371417"
CDS 223488..224468
/locus_tag="hp2018_0229"
/codon_start=1
/transl_table=11
/product="IscU/NifU-like protein"
/protein_id="YP_005791044.1"
/db_xref="GI:385231125"
/db_xref="GeneID:12371417"
/translation="MAKHDLVGSALWDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKL
IVADYGAEACGDAVRLYWLVDESTDTIIDAKFKSFGCGTAIASSDMMVELCLNKRVQD
AVKITNLDVERGLRDDPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNAEDFEEEIIV
CECARVSLGTIKEVIRLNDLKSVEEITNYTKAGAFCKSCVRPGGHEKRDYYLVDILKE
VREEMEAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRTMLMMDGGDLEIL
DIKESDDYIDVYIRYMGACDGCMSATTGTLFAIENALQELLDRSIRVLPI"
misc_feature 223518..224465
/locus_tag="hp2018_0229"
/note="Fe-S cluster assembly protein NifU; Region:
NifU_proper; TIGR02000"
/db_xref="CDD:162652"
misc_feature 223530..223913
/locus_tag="hp2018_0229"
/note="Iron-sulfur cluster scaffold-like proteins; Region:
IscU_like; cd06664"
/db_xref="CDD:143480"
misc_feature order(223530..223538,223545..223550,223647..223652,
223728..223730,223734..223736,223866..223871,
223875..223880)
/locus_tag="hp2018_0229"
/note="trimerization site [polypeptide binding]; other
site"
/db_xref="CDD:143480"
misc_feature order(223647..223649,223728..223730,223878..223880)
/locus_tag="hp2018_0229"
/note="active site"
/db_xref="CDD:143480"
misc_feature 223962..224090
/locus_tag="hp2018_0229"
/note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD;
pfam04324"
/db_xref="CDD:202971"
misc_feature 224247..224465
/locus_tag="hp2018_0229"
/note="NifU-like domain; Region: NifU; pfam01106"
/db_xref="CDD:144628"
gene 224632..224865
/locus_tag="hp2018_0230"
/db_xref="GeneID:12371418"
CDS 224632..224865
/locus_tag="hp2018_0230"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791045.1"
/db_xref="GI:385231126"
/db_xref="GeneID:12371418"
/translation="MKTTENTDETHLRETKNKLGRKPKTDANKKTRAVSLYFSDEQYQ
KLEKMANEEEESVGSYIKRYILKALRKIEQNGP"
misc_feature 224731..224844
/locus_tag="hp2018_0230"
/note="Ribbon-helix-helix protein, copG family; Region:
RHH_1; cl15783"
/db_xref="CDD:210183"
gene 224977..226323
/gene="radA"
/locus_tag="hp2018_0231"
/db_xref="GeneID:12371419"
CDS 224977..226323
/gene="radA"
/locus_tag="hp2018_0231"
/codon_start=1
/transl_table=11
/product="DNA repair protein"
/protein_id="YP_005791046.1"
/db_xref="GI:385231127"
/db_xref="GeneID:12371419"
/translation="MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVL
NALKKPLPQAQKSVSIAEIEHEEVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGK
STLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
MESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITK
EGSIAGPRVLEHMVDSVLYFEGDPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAK
EASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAPKRLANGFDTNRLNM
LIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLG
EVSLNGRILEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIVEWM"
misc_feature 224977..226311
/gene="radA"
/locus_tag="hp2018_0231"
/note="DNA repair protein RadA; Region: sms; TIGR00416"
/db_xref="CDD:161868"
misc_feature 224998..226110
/gene="radA"
/locus_tag="hp2018_0231"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:29987"
misc_feature 225262..225285
/gene="radA"
/locus_tag="hp2018_0231"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:29987"
misc_feature order(225265..225267,225277..225285,225340..225342,
225346..225348,225490..225495)
/gene="radA"
/locus_tag="hp2018_0231"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29987"
misc_feature 225481..225492
/gene="radA"
/locus_tag="hp2018_0231"
/note="Walker B motif; other site"
/db_xref="CDD:29987"
misc_feature <225985..226251
/gene="radA"
/locus_tag="hp2018_0231"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
cl12214"
/db_xref="CDD:209472"
gene 226447..227526
/gene="msrA"
/locus_tag="hp2018_0232"
/db_xref="GeneID:12371420"
CDS 226447..227526
/gene="msrA"
/locus_tag="hp2018_0232"
/EC_number="1.8.4.12"
/EC_number="1.8.4.11"
/codon_start=1
/transl_table=11
/product="Peptide methionine sulfoxide reductase"
/protein_id="YP_005791047.1"
/db_xref="GI:385231128"
/db_xref="GeneID:12371420"
/translation="MKVLSYLKIFYLFILIGAIMQANESMGAKHPKTDERVIYLAGGC
FWGLEAYMERIYGVIDASSGYANGKTSSTNYEKLHESDHAESVKVIYDPKKISLDKLL
RYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDNALKALQKEVKGKIAIEVE
PLKNYVRAEEYHQDYLKKHPGGYCHIDLKKADEVIVDDDKYTKPSDEVLKKKLTKLQY
EVTQNKHTEKPFENEYYNKEEEGIYVDITTGEPLFSSADKYDSGCGWPSFSKPINKDV
VKYEDDESLNRKRIEVLSRIGKAHLGHVFNDGPKELGGLRYCINSAALRFIPLKDMEK
EGYGEFIPYIKKGELKKYIQDKKSH"
misc_feature 226537..227040
/gene="msrA"
/locus_tag="hp2018_0232"
/note="Peptide methionine sulfoxide reductase
[Posttranslational modification, protein turnover,
chaperones]; Region: MsrA; COG0225"
/db_xref="CDD:30574"
misc_feature 227044..227472
/gene="msrA"
/locus_tag="hp2018_0232"
/note="methionine sulfoxide reductase B; Provisional;
Region: PRK00222"
/db_xref="CDD:178935"
misc_feature 227062..227430
/gene="msrA"
/locus_tag="hp2018_0232"
/note="SelR domain; Region: SelR; pfam01641"
/db_xref="CDD:201899"
gene complement(227682..227798)
/locus_tag="hp2018_0233"
/db_xref="GeneID:12371421"
CDS complement(227682..227798)
/locus_tag="hp2018_0233"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791048.1"
/db_xref="GI:385231129"
/db_xref="GeneID:12371421"
/translation="MISKYPPILIKEISFCHKTMKTKQPKPHFLKKLKSFSY"
gene 227770..227919
/locus_tag="hp2018_0234"
/db_xref="GeneID:12371422"
CDS 227770..227919
/locus_tag="hp2018_0234"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791049.1"
/db_xref="GI:385231130"
/db_xref="GeneID:12371422"
/translation="MRIGGYFEIILSIIPLTLKKRFFRDYRLIRIKLFAISSLKNALD
LFLNF"
gene complement(227916..228749)
/locus_tag="hp2018_0235"
/db_xref="GeneID:12371423"
CDS complement(227916..228749)
/locus_tag="hp2018_0235"
/codon_start=1
/transl_table=11
/product="Integral membrane protein"
/protein_id="YP_005791050.1"
/db_xref="GI:385231131"
/db_xref="GeneID:12371423"
/translation="MEESTAFILALVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSH
AVGISLMQMLFSSVVGSIINYKKGLLDLKEGSFAALGGLMGAVLGSFILKIINDKILM
AVFVVVVCYTFIKYAFSNNKKPEHFEEMHFDLHANNKTPEKKRAIPFVSMDRTHGVLM
LAGFVTGIFSIPLGMGGGILMVPFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNG
KVLDDTSVQAGVITGVGAFLGVGIGIKLIALANEKVHKILLLLIYALSILATLHKLIM
G"
misc_feature complement(227982..228662)
/locus_tag="hp2018_0235"
/note="Predicted permeases [General function prediction
only]; Region: COG0730"
/db_xref="CDD:31074"
misc_feature complement(227982..228662)
/locus_tag="hp2018_0235"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:202049"
gene complement(228968..229345)
/locus_tag="hp2018_0236"
/db_xref="GeneID:12371424"
CDS complement(228968..229345)
/locus_tag="hp2018_0236"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_005791051.1"
/db_xref="GI:385231132"
/db_xref="GeneID:12371424"
/translation="MQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTY
GVGMDALFNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNAN
VSASNFQFLFDLGLRMNNYVFAY"
misc_feature complement(<228983..229342)
/locus_tag="hp2018_0236"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(229480..229605)
/locus_tag="hp2018_0237"
/db_xref="GeneID:12371425"
CDS complement(229480..229605)
/locus_tag="hp2018_0237"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791052.1"
/db_xref="GI:385231133"
/db_xref="GeneID:12371425"
/translation="MIVTKDLKTNFKPDKIPFLKSSYMMFYCKKYLKLFFFFFKI"
gene 229630..230787
/locus_tag="hp2018_0238"
/db_xref="GeneID:12371426"
CDS 229630..230787
/locus_tag="hp2018_0238"
/codon_start=1
/transl_table=11
/product="sulfate permease"
/protein_id="YP_005791053.1"
/db_xref="GI:385231134"
/db_xref="GeneID:12371426"
/translation="MLEKIQKEWLSNIQKDLLSGFVVGLSVIPETAGFAIMVGLDVGV
AFYTTFYMAFVLSLFGARKAMISAAAGSVALILVGVVKNYGLEYAGVATLMAGILQIL
LGYLKIGNLLKFIPQSVMYGFVNVLGILLLTEQFKFLQNQNLGVFILLAIGILIIYLF
PLITKKIPSNLICILAVSAIALIFDMHAPNLGSIEQGVSGFHFIIIPKNLDFKMVAGL
LPYALSLALVGTIESLLTAKTLDVILKDGVSDKNKETKAQGLGNVISGLLGGMTGCAL
VGQSIINAKSGAKTRLSTFFAGFSLMVLILVFNEYVVKIPIVAVVAVMVMISFTTFNF
QSIMNIKTIKLYDTLNMLLVVAVVLYTHNLAIGVVVGVLVNALWIKSKGIA"
misc_feature 229630..>230775
/locus_tag="hp2018_0238"
/note="Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism];
Region: SUL1; COG0659"
/db_xref="CDD:31004"
misc_feature 229630..229872
/locus_tag="hp2018_0238"
/note="Sulfate transporter N-terminal domain with GLY
motif; Region: Sulfate_tra_GLY; pfam13792"
/db_xref="CDD:205965"
misc_feature 229936..230676
/locus_tag="hp2018_0238"
/note="Sulfate transporter family; Region: Sulfate_transp;
pfam00916"
/db_xref="CDD:144493"
gene complement(230821..230896)
/locus_tag="hp2018_t08"
/db_xref="GeneID:12371427"
tRNA complement(230821..230896)
/locus_tag="hp2018_t08"
/product="tRNA-Asn"
/db_xref="GeneID:12371427"
gene complement(231026..232450)
/locus_tag="hp2018_0239"
/db_xref="GeneID:12371428"
CDS complement(231026..232450)
/locus_tag="hp2018_0239"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_005791054.1"
/db_xref="GI:385231135"
/db_xref="GeneID:12371428"
/translation="MASSLFAEDDGAYMSVGYQIGEAAQMVKNTGEIQKVSNAYENLN
NLLTRYNELKQTASNTDSSTTQAIDNLEKSASRLKTTPNTANQAVSSALSSAVGMWQV
IASNLANNSLSTSEYDKINAISQLLQNTLENKNNNLKIENDYDQLLTQASTIINTLQS
QCPSVDGGNGTPWGINASGNACTIFGNTFSAINSMIDSAKKAAAEARRTAPEGPNQQN
AFNNADFNKNLNQVSSVINDTISYLKGDNLETIYNAIQKTPNSKGFQSLVSRSSYSYS
LNETQYSQFQTTTKEFGHNPFRSVGLINSQSNNGAMNGVGVQLGYKQFFGKNKFFGIR
YYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGSDRNRKVSFGIFGGIALA
GTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRLQGIHHGIELGVKIPTINTNY
YSFMGAKLAYRRLYSLYLNYVLAY"
misc_feature complement(231029..231505)
/locus_tag="hp2018_0239"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(232651..233382)
/gene="kdsB"
/locus_tag="hp2018_0240"
/db_xref="GeneID:12371429"
CDS complement(232651..233382)
/gene="kdsB"
/locus_tag="hp2018_0240"
/EC_number="2.7.7.38"
/codon_start=1
/transl_table=11
/product="3-deoxy-manno-octulosonate cytidylyltransferase"
/protein_id="YP_005791055.1"
/db_xref="GI:385231136"
/db_xref="GeneID:12371429"
/translation="MIIIPARLKSSRFENKVLEDIFGLPMVVRCAKNANLVDECVVAC
DDESIMQTCQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKE
VILALLEATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFD
AKRQTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQS
ESMGIDTKEDLQNALKIFSPDLLKR"
misc_feature complement(232678..233379)
/gene="kdsB"
/locus_tag="hp2018_0240"
/note="CMP-KDO synthetase catalyzes the activation of KDO
which is an essential component of the lipopolysaccharide;
Region: CMP-KDO-Synthetase; cd02517"
/db_xref="CDD:133010"
misc_feature complement(order(233098..233100,233104..233106,
233173..233175,233254..233256,233362..233370))
/gene="kdsB"
/locus_tag="hp2018_0240"
/note="Ligand binding site; other site"
/db_xref="CDD:133010"
misc_feature complement(order(232759..232770,232789..232797,
232804..232809,232885..232887,232918..232938,
232942..232947,232963..232971,232987..232989,
233035..233037))
/gene="kdsB"
/locus_tag="hp2018_0240"
/note="oligomer interface; other site"
/db_xref="CDD:133010"
gene 233498..234295
/locus_tag="hp2018_0241"
/db_xref="GeneID:12371430"
CDS 233498..234295
/locus_tag="hp2018_0241"
/codon_start=1
/transl_table=11
/product="disulfide isomerase"
/protein_id="YP_005791056.1"
/db_xref="GI:385231137"
/db_xref="GeneID:12371430"
/translation="MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLIKVIEKQTN
KKVRILETKPLKSNQDLKIVVVEDPDTKYQIPLVVSKDGNLVIGLSGIFFSNNSEDVK
LLTETNQKIQALNATQQNSAKLNALFDEVPADYVIELPSTNAENKDKILYIVSDPMCP
HCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISIL
EKIYSTQYDINAQKEPEDLRTKVENTTKKIFESGVIKGVPFLYHYKA"
misc_feature 233588..234292
/locus_tag="hp2018_0241"
/note="Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones]; Region: DsbG;
COG1651"
/db_xref="CDD:31837"
misc_feature <233837..>234088
/locus_tag="hp2018_0241"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:214060"
gene 234311..234961
/locus_tag="hp2018_0242"
/db_xref="GeneID:12371431"
CDS 234311..234961
/locus_tag="hp2018_0242"
/codon_start=1
/transl_table=11
/product="flagellar motility protein"
/protein_id="YP_005791057.1"
/db_xref="GI:385231138"
/db_xref="GeneID:12371431"
/translation="MKKPYRKISDYAIAGGLSALVMVSIVGCKSNADDKPKEQSSLSQ
SVQKGAFVILEEQKDKSYKVVEEYPSSRTHIIVRDLQGNERVLSNEEIQKLIKEEEAK
IDNGTSKLIQPNNGGGGSESSGFGLGSAILGSAAGAILGSYIGNKLFNNPNYQQNAQR
TYKSPQAYQRSQNSFSKSAPSASGMGGASRGQSGFFGSSRPTSSPAVSSGTRGFNA"
misc_feature 234314..234835
/locus_tag="hp2018_0242"
/note="hypothetical protein; Provisional; Region:
PRK04081"
/db_xref="CDD:179737"
gene 234987..236159
/locus_tag="hp2018_0243"
/db_xref="GeneID:12371432"
CDS 234987..236159
/locus_tag="hp2018_0243"
/codon_start=1
/transl_table=11
/product="glutathionylspermidine synthase like protein"
/protein_id="YP_005791058.1"
/db_xref="GI:385231139"
/db_xref="GeneID:12371432"
/translation="MQVIPLKPLDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEAD
AYYDACNELYDMFVETAEEAIKNDRFFELDIPNALIPMIKQSFEEEVHWHIYGRFDLA
GGLDGKPIKLLEFNADTPTMLYETALIQWALLKANGYDENKQFNNLYEVLGENFKRLV
TLGEDTSRFEELYEGWKILFSSVRGNIEEERTMRFLQDVAQSVGFETDFSYIDEVEFN
VEEGVFKNGLNYEFLFKLIPWENIAIDEPELALLMQGMMENKNTIFLNPAYTILFQSK
RFLKLLWDRYPKHPLLLETSYEPLANKKQIKKVAFGREGANSEIFEASMQSLLKTDGV
YSNHKPIYQEFYELNSHNGLYYQPNVFFAYESCALGFRKGGLILDNFSKFVSHRLQ"
misc_feature 234996..236156
/locus_tag="hp2018_0243"
/note="Glutathionylspermidine synthase [Amino acid
transport and metabolism]; Region: Gsp; COG0754"
/db_xref="CDD:31097"
gene 236168..236689
/locus_tag="hp2018_0244"
/db_xref="GeneID:12371433"
CDS 236168..236689
/locus_tag="hp2018_0244"
/codon_start=1
/transl_table=11
/product="integral membrane protein"
/protein_id="YP_005791059.1"
/db_xref="GI:385231140"
/db_xref="GeneID:12371433"
/translation="MMRYFHIYATTFFFPLALLFAISGLSLLFKARQDTGAKIKEWVL
EKSLKKEERLDFLKSFLKENHIAMPKKIEPREYRGALVIGTPLYEINLETKGAQTKIK
TIERGFLGALIMLHKAKVGIVFQALLGIFCVFLLLFYLSAFLMVAFKDTKRMFVSVLI
GSVVFFGAIYWSL"
misc_feature <236432..236659
/locus_tag="hp2018_0244"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3295"
/db_xref="CDD:225832"
gene complement(237458..238525)
/locus_tag="hp2018_0245"
/db_xref="GeneID:12371434"
CDS complement(237458..238525)
/locus_tag="hp2018_0245"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791060.1"
/db_xref="GI:385231141"
/db_xref="GeneID:12371434"
/translation="MNIKILKILVGGLLFWGLNAHLWGKQDNSFLGIGERAYKSGNYS
KAASYFKKACNDNVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLG
GLYDEGLGTAQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSC
NFDMAKGCYVLGTAYEKGFLEVKQSNHKAVIYYLKACRLNEGQACRTLGSLFENGDAG
LDEDFEVAFDYLQKACALNNSGGCASLGSMYMLGRYVKKDPQKAFNYFKQACDMGSAV
SCSRMGFMYSQGDTVPKDLRKALDNYERGCNMGDEVGCFALAGMYYNMKDKENAIMIY
DKGCKLGMKQACENLTKLRGY"
misc_feature complement(237524..238447)
/locus_tag="hp2018_0245"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature complement(238244..238351)
/locus_tag="hp2018_0245"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(238136..238240)
/locus_tag="hp2018_0245"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(237926..238033)
/locus_tag="hp2018_0245"
/note="Sel1 repeat; Region: Sel1; cl02723"
/db_xref="CDD:207711"
misc_feature complement(237704..237805)
/locus_tag="hp2018_0245"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(237596..237703)
/locus_tag="hp2018_0245"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(238637..239008)
/locus_tag="hp2018_0246"
/db_xref="GeneID:12371435"
CDS complement(238637..239008)
/locus_tag="hp2018_0246"
/codon_start=1
/transl_table=11
/product="Putative periplasmic protein"
/protein_id="YP_005791061.1"
/db_xref="GI:385231142"
/db_xref="GeneID:12371435"
/translation="MRLLIAPILFLWWLSLNAKEADFISDWEYGLALYKNPRGVACAK
CHGIKGEQQEITFYYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQ
AIYLYITSLGRKDERKDPSKP"
misc_feature complement(238685..238921)
/locus_tag="hp2018_0246"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene complement(239008..239928)
/locus_tag="hp2018_0247"
/db_xref="GeneID:12371436"
CDS complement(239008..239928)
/locus_tag="hp2018_0247"
/EC_number="2.5.1.61"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_005791062.1"
/db_xref="GI:385231143"
/db_xref="GeneID:12371436"
/translation="MGKLVIGSRGSELALWQANHIKERLKKECSMESEIRIVKTKGDK
ILDTPLSKIGGKGLFTKELEELLLKGAIDLAVHSLKDVPVVFEKGLDLACITKRADVR
DTVLSVKFPDLMSLPKGAKVGTTSLRRSMQIKFKRKDLDTESLRGNVQTRLKKLECGE
FDAIILAEAGLCRLNVQGAKYRKAFSVKEMIPSMGQGALGVEMLKNHKHFITLQKLND
EESAFCCHLEREFIKGLNGGCQIPIGVHANLMGDEVKIQAVLGLPNGKEVITKEKQGD
KNKAFDLVRELLEEFLQSGAKEILEKAQLF"
misc_feature complement(239050..239928)
/locus_tag="hp2018_0247"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:178840"
misc_feature complement(239050..239919)
/locus_tag="hp2018_0247"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cd00494"
/db_xref="CDD:29604"
misc_feature complement(order(239119..239121,239125..239127,
239134..239136,239143..239145,239158..239160,
239194..239196,239200..239202,239212..239214,
239233..239235,239242..239247,239257..239259,
239266..239268,239284..239286,239338..239361,
239410..239415,239422..239424,239485..239487,
239524..239526,239536..239541,239545..239547,
239620..239637,239641..239646,239671..239673,
239677..239694,239881..239883,239896..239898))
/locus_tag="hp2018_0247"
/note="domain interfaces; other site"
/db_xref="CDD:29604"
misc_feature complement(order(239212..239214,239338..239343,
239350..239352,239410..239412,239419..239421,
239428..239436,239473..239475,239494..239496,
239542..239547,239551..239559,239686..239691,
239695..239697,239878..239880,239890..239892))
/locus_tag="hp2018_0247"
/note="active site"
/db_xref="CDD:29604"
gene complement(239938..241671)
/locus_tag="hp2018_0248"
/db_xref="GeneID:12371437"
CDS complement(239938..241671)
/locus_tag="hp2018_0248"
/EC_number="6.1.1.15"
/codon_start=1
/transl_table=11
/product="prolyl-tRNA synthetase"
/protein_id="YP_005791063.1"
/db_xref="GI:385231144"
/db_xref="GeneID:12371437"
/translation="MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLP
LAKKVLDKIENITHKRMQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDN
DFVLSPTLEENITEIAANFIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDG
YSFHEDTESLDKEFLNTQNAYKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGE
DTIVVCQNCDYAANIEIAKRSKRTEPLNVPKAQLAKFPTPNTTSAQSVAEFFKTEPYF
VLKAIIKKVIHKDKETLACFFVRGDDNLEETKALNALNLLGANALELREANEEDLNHA
GLIAGFIGPYGLKKHVCYIIFDEDLKDSDCLIVGANEKDFHAVGVDLKGFENLVYADI
VQVKESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCYG
IGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKG
VDVLLDDRDARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTIKDIEL
EEKILEMLASE"
misc_feature complement(239995..241671)
/locus_tag="hp2018_0248"
/note="prolyl-tRNA synthetase; Provisional; Region:
PRK09194"
/db_xref="CDD:181689"
misc_feature complement(<241027..241623)
/locus_tag="hp2018_0248"
/note="Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is responsible
for the attachment of proline to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent formation of...; Region:
ProRS_core_prok; cd00779"
/db_xref="CDD:73229"
misc_feature complement(order(241210..241212,241261..241263,
241321..241323,241375..241389,241393..241395,
241453..241458,241462..241470,241519..241521,
241540..241551,241570..241575))
/locus_tag="hp2018_0248"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73229"
misc_feature complement(241453..241476)
/locus_tag="hp2018_0248"
/note="motif 1; other site"
/db_xref="CDD:73229"
misc_feature complement(order(241195..241197,241201..241203,
241207..241209,241216..241224,241246..241248,
241252..241254,241339..241341,241345..241347))
/locus_tag="hp2018_0248"
/note="active site"
/db_xref="CDD:73229"
misc_feature complement(241246..241257)
/locus_tag="hp2018_0248"
/note="motif 2; other site"
/db_xref="CDD:73229"
misc_feature complement(240496..240996)
/locus_tag="hp2018_0248"
/note="INS is an amino acid-editing domain inserted (INS)
into the bacterial class II prolyl-tRNA synthetase (ProRS)
however, this CD is not exclusively bacterial. It is also
found at the N-terminus of the eukaryotic/archaea-like
ProRS's of yeasts and...; Region: ProRS-INS; cd04334"
/db_xref="CDD:88585"
misc_feature complement(order(240568..240570,240652..240657,
240835..240837))
/locus_tag="hp2018_0248"
/note="putative deacylase active site [active]"
/db_xref="CDD:88585"
misc_feature complement(240283..>240453)
/locus_tag="hp2018_0248"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature complement(order(240307..240309,240316..240321,
240325..240330,240418..240420,240430..240435))
/locus_tag="hp2018_0248"
/note="active site"
/db_xref="CDD:29813"
misc_feature complement(order(240307..240309,240316..240318))
/locus_tag="hp2018_0248"
/note="motif 3; other site"
/db_xref="CDD:29813"
misc_feature complement(239992..240240)
/locus_tag="hp2018_0248"
/note="ProRS Prolyl-anticodon binding domain, short
version found predominantly in bacteria. ProRS belongs to
class II aminoacyl-tRNA synthetases (aaRS). This alignment
contains the anticodon binding domain, which is
responsible for specificity in tRNA-binding; Region:
ProRS_anticodon_short; cd00861"
/db_xref="CDD:29801"
misc_feature complement(order(240019..240021,240025..240027,
240055..240057,240079..240081,240097..240099,
240211..240216))
/locus_tag="hp2018_0248"
/note="anticodon binding site; other site"
/db_xref="CDD:29801"
gene complement(241675..243024)
/gene="hemA"
/locus_tag="hp2018_0249"
/db_xref="GeneID:12371438"
CDS complement(241675..243024)
/gene="hemA"
/locus_tag="hp2018_0249"
/EC_number="1.2.1.70"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA reductase"
/protein_id="YP_005791064.1"
/db_xref="GI:385231145"
/db_xref="GeneID:12371438"
/translation="MELETHLSKYFTLAFTHKSMSLEMREKLAINSPIMLKEFLQTIK
NHCPNIKECMVLSTCNRFEIYASLKHGANTHEQKSALLKILAQNKKMSVSDLEKCVLI
NTDESAVHHVFSVCSSLDSLVVGETQITGQMKNAYKFAFEEKFCSKDLTRLLHFAFKC
AAKVRNLTGISKQGVSISSVAVKEVLSIFEKERIKDKKALVIGLGEMAQLVIKHLLNK
QFEVLILGRNAAKFEDFVKELEEPKKVGFQNVENLSTYINEYELLFCATSSPNFIVRN
SMLKETIFRRFWFDLAVPRNIEKPTLNHIFLYSVDDLEPMVKENVGNRQESRTKAYEI
VGLATMEFYQWIQSLEVEPLIKDLRELARISAQKELQKALKKRYVPKEYEGNIEKILH
NAFNTFLHHPTIALKKNAQKEESDVLVGAIKNLFNLDKSNANHVQNLNLYKCEYYEE"
misc_feature complement(241738..242997)
/gene="hemA"
/locus_tag="hp2018_0249"
/note="glutamyl-tRNA reductase; Region: hemA; TIGR01035"
/db_xref="CDD:211619"
misc_feature complement(242044..242997)
/gene="hemA"
/locus_tag="hp2018_0249"
/note="NADP-binding domain of glutamyl-tRNA reductase;
Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213"
/db_xref="CDD:133452"
misc_feature complement(order(242599..242601,242611..242613,
242620..242622,242632..242634,242641..242643,
242851..242853,242947..242949))
/gene="hemA"
/locus_tag="hp2018_0249"
/note="tRNA; other site"
/db_xref="CDD:133452"
misc_feature complement(order(242629..242631,242641..242643,
242647..242649,242662..242664,242842..242844,
242848..242853))
/gene="hemA"
/locus_tag="hp2018_0249"
/note="putative tRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:133452"
misc_feature complement(order(242401..242403,242410..242412,
242416..242418))
/gene="hemA"
/locus_tag="hp2018_0249"
/note="putative NADP binding site [chemical binding];
other site"
/db_xref="CDD:133452"
misc_feature complement(241738..242037)
/gene="hemA"
/locus_tag="hp2018_0249"
/note="Glutamyl-tRNAGlu reductase, dimerisation domain;
Region: GlutR_dimer; pfam00745"
/db_xref="CDD:201424"
gene complement(243024..243947)
/gene="ispB"
/locus_tag="hp2018_0250"
/db_xref="GeneID:12371439"
CDS complement(243024..243947)
/gene="ispB"
/locus_tag="hp2018_0250"
/codon_start=1
/transl_table=11
/product="octaprenyl-diphosphate synthase"
/protein_id="YP_005791065.1"
/db_xref="GI:385231146"
/db_xref="GeneID:12371439"
/translation="MQEKRLKAIQNKIASWIKEIESGFIDELFSKIGPSKMLRSKLML
ALLDEKTDAILLDKAFNLCAIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAV
MLGDVFYSKAFFELSKMGESIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILE
DKTAHFIEASLKSMAILLNKDAKMYADFGLHFGMAFQIIDDLLDITQDANTLGKPNFS
DFKEGKTTLPYLLLYEKLNPHEQGLLISYFKQDSHEIIEWTKEKFKQHGIIEETLKIA
QVYSKKALEAIKGENNLILEKLAQDVIYRTF"
misc_feature complement(243027..243947)
/gene="ispB"
/locus_tag="hp2018_0250"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature complement(243033..243842)
/gene="ispB"
/locus_tag="hp2018_0250"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(243276..243278,243291..243293,
243306..243308,243336..243338,243345..243350,
243450..243452,243459..243464,243525..243527,
243534..243536,243687..243692,243705..243710,
243714..243722,243726..243734,243741..243743))
/gene="ispB"
/locus_tag="hp2018_0250"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(243705..243734)
/gene="ispB"
/locus_tag="hp2018_0250"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(243276..243278,243291..243293,
243306..243308,243336..243338,243345..243350,
243462..243464,243525..243527,243687..243692,
243705..243707,243714..243719))
/gene="ispB"
/locus_tag="hp2018_0250"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(243345..243350,243462..243464,
243687..243692,243705..243707,243714..243719))
/gene="ispB"
/locus_tag="hp2018_0250"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(243462..243464,243525..243527,
243687..243692,243705..243707,243714..243719))
/gene="ispB"
/locus_tag="hp2018_0250"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(243270..243284,243291..243308,
243324..243329,243657..243701))
/gene="ispB"
/locus_tag="hp2018_0250"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(243276..243278,243291..243293,
243306..243308,243336..243338,243345..243350))
/gene="ispB"
/locus_tag="hp2018_0250"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(243956..244351)
/locus_tag="hp2018_0251"
/db_xref="GeneID:12371440"
CDS complement(243956..244351)
/locus_tag="hp2018_0251"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791066.1"
/db_xref="GI:385231147"
/db_xref="GeneID:12371440"
/translation="MNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTS
NEQTKEITLYWTLYANKGLVINMRFNHFPYQFILYTDHARNTYNLKVFEKNFSSNSAL
SLVFKDFKEDKATLRFLALMPLVFSPKEP"
gene complement(244344..244628)
/locus_tag="hp2018_0252"
/db_xref="GeneID:12371441"
CDS complement(244344..244628)
/locus_tag="hp2018_0252"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791067.1"
/db_xref="GI:385231148"
/db_xref="GeneID:12371441"
/translation="MRDYSELEIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALL
ETFIEKEDLEEKFESFAKALRMDEELQQKIESRKTDIVIQSMANILSGNE"
misc_feature complement(244347..244601)
/locus_tag="hp2018_0252"
/note="Domain of unknown function (DUF2018); Region:
DUF2018; pfam09442"
/db_xref="CDD:150197"
gene complement(244649..245083)
/gene="dps"
/locus_tag="hp2018_0253"
/db_xref="GeneID:12371442"
CDS complement(244649..245083)
/gene="dps"
/locus_tag="hp2018_0253"
/EC_number="1.16.3.1"
/codon_start=1
/transl_table=11
/product="Non-specific DNA-binding protein /Iron-binding
ferritin-like antioxidant protein /Ferroxidase"
/protein_id="YP_005791068.1"
/db_xref="GI:385231149"
/db_xref="GeneID:12371442"
/translation="MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIY
EEFADMFDDLAERIVQLGHHPLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKYL
EKEFEELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLEAHLA"
misc_feature complement(244652..245083)
/gene="dps"
/locus_tag="hp2018_0253"
/note="DNA-binding ferritin-like protein (oxidative damage
protectant) [Inorganic ion transport and metabolism];
Region: Dps; COG0783"
/db_xref="CDD:223854"
misc_feature complement(244655..245071)
/gene="dps"
/locus_tag="hp2018_0253"
/note="DPS protein, ferritin-like diiron-binding domain;
Region: DPS; cd01043"
/db_xref="CDD:153102"
misc_feature complement(order(244916..244921,244928..244930,
244940..244942,244973..244975,245006..245011,
245015..245017,245027..245032))
/gene="dps"
/locus_tag="hp2018_0253"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153102"
misc_feature complement(order(244916..244918,244928..244930,
244961..244963,244973..244975,245009..245011))
/gene="dps"
/locus_tag="hp2018_0253"
/note="DPS ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153102"
misc_feature complement(order(244703..244708,244727..244729))
/gene="dps"
/locus_tag="hp2018_0253"
/note="ion pore; other site"
/db_xref="CDD:153102"
gene complement(245322..246467)
/gene="flgS"
/locus_tag="hp2018_0254"
/db_xref="GeneID:12371443"
CDS complement(245322..246467)
/gene="flgS"
/locus_tag="hp2018_0254"
/codon_start=1
/transl_table=11
/product="Flagellar sensory histidine kinase"
/protein_id="YP_005791069.1"
/db_xref="GI:385231150"
/db_xref="GeneID:12371443"
/translation="MKKSKRLKNSPLKRSHLKRSDKASSFKGLLENENNVISLENFKP
KESEDLLENFSNKKDMQELLELLNQFILQSYKVEKEFKDYKALYEWVIEILPQAIWVM
NENGSFFYKNSLANQSHEVFNKAKLGNFNTEIEHENKSYLVQQNSIQGKQIITATDIS
AQKRQERLASMGKISAHLAHEIRNPVGSISLLASVLLKHANEKTKPIVVELQKALWRV
ERIIKATLLFSKGIQANRTKQSLKTLESDLKEALNCYTYSKDIDFLFNFSDEEGFFDF
DLMGIVLQNFLYNAIDAIEALEESEQGQVKIEAFIQNEFIVFTIIDNGKEVENKSALF
EPFETTKLKGNGLGLALSLQVVKAHEGSIVLLENQEKTFEIKILNAS"
misc_feature complement(245337..246281)
/gene="flgS"
/locus_tag="hp2018_0254"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(245778..245966)
/gene="flgS"
/locus_tag="hp2018_0254"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(245793..245795,245805..245807,
245814..245816,245826..245828,245835..245837,
245847..245849,245892..245894,245901..245903,
245913..245915,245922..245924,245934..245936,
245946..245948))
/gene="flgS"
/locus_tag="hp2018_0254"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(245928..245930)
/gene="flgS"
/locus_tag="hp2018_0254"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(245337..245624)
/gene="flgS"
/locus_tag="hp2018_0254"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(245349..245351,245367..245369,
245373..245375,245421..245432,245496..245498,
245502..245504,245508..245510,245592..245594,
245601..245603,245613..245615))
/gene="flgS"
/locus_tag="hp2018_0254"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(245601..245603)
/gene="flgS"
/locus_tag="hp2018_0254"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(245424..245426,245430..245432,
245496..245498))
/gene="flgS"
/locus_tag="hp2018_0254"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(246464..246781)
/locus_tag="hp2018_0255"
/db_xref="GeneID:12371444"
CDS complement(246464..246781)
/locus_tag="hp2018_0255"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791070.1"
/db_xref="GI:385231151"
/db_xref="GeneID:12371444"
/translation="MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEA
LLLKFMLDTAMKMDNPLYPKAPGDEIYASMYKDTLSKELSGNFGYSEMLFNFLKEQEK
QKP"
gene complement(246778..247806)
/gene="flgI"
/locus_tag="hp2018_0256"
/db_xref="GeneID:12371445"
CDS complement(246778..247806)
/gene="flgI"
/locus_tag="hp2018_0256"
/codon_start=1
/transl_table=11
/product="flagellar P-ring protein"
/protein_id="YP_005791071.1"
/db_xref="GI:385231152"
/db_xref="GeneID:12371445"
/translation="MKRVFLCLIFVLAFHELLAEKIGDIASVVGVRDNQLIGYGLVIG
LNGTGDKSGSKFTMQSISNMLESVNVKISADDIKSKNVAAVMITASLPPFARQGDKID
IHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQGAIVSGNSSNLLSANIINGATIER
EVSYDLFHKNAMTLSLKNPNFKNAIQVQNTLNKVFGNKVAIALDPKTIQITRPERLSM
VEFLALVQEIPINYSAKNKIIVDEKSGTIVSGVDIIVHPIVVTSQDITLKITKEPLND
SKNTQDLDNNMSLDTAHNTLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGA
ISAEMEIL"
misc_feature complement(246781..247806)
/gene="flgI"
/locus_tag="hp2018_0256"
/note="flagellar basal body P-ring protein; Provisional;
Region: flgI; PRK05303"
/db_xref="CDD:180004"
misc_feature complement(246784..247806)
/gene="flgI"
/locus_tag="hp2018_0256"
/note="flagellar basal body P-ring protein; Reviewed;
Region: flgI; cl14622"
/db_xref="CDD:187395"
gene 247992..249467
/locus_tag="hp2018_0257"
/db_xref="GeneID:12371446"
CDS 247992..249467
/locus_tag="hp2018_0257"
/codon_start=1
/transl_table=11
/product="cold-shock DEAD-box protein A"
/protein_id="YP_005791072.1"
/db_xref="GI:385231153"
/db_xref="GeneID:12371446"
/translation="MELNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPS
PIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQ
ISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKF
VPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPI
KIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQF
LASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHL
PLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEIPTINENQ
IIKTLHDAKVSEGIISLYEQLTEIFEPSQLVLKLLSLQFETSKIGLNQQEIDAIQNPK
EKTPKPPNKKTQHEPAHSFKKGQHRDKHPKTNRYSKKPKRR"
misc_feature 248052..249149
/locus_tag="hp2018_0257"
/note="helicase 45; Provisional; Region: PTZ00424"
/db_xref="CDD:185609"
misc_feature 248055..248651
/locus_tag="hp2018_0257"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:28928"
misc_feature 248190..248204
/locus_tag="hp2018_0257"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28928"
misc_feature 248493..248504
/locus_tag="hp2018_0257"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:28928"
misc_feature 248586..248594
/locus_tag="hp2018_0257"
/note="motif III; other site"
/db_xref="CDD:28928"
misc_feature 248682..249071
/locus_tag="hp2018_0257"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(248784..248795,248853..248858,248931..248939)
/locus_tag="hp2018_0257"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(248955..248957,249018..249020,249030..249032,
249039..249041)
/locus_tag="hp2018_0257"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 249488..250576
/locus_tag="hp2018_0258"
/db_xref="GeneID:12371447"
CDS 249488..250576
/locus_tag="hp2018_0258"
/codon_start=1
/transl_table=11
/product="stomatin/prohibitin like protein"
/protein_id="YP_005791073.1"
/db_xref="GI:385231154"
/db_xref="GeneID:12371447"
/translation="MPIDLNEHLKKKNSQRENPTPNTPNNGGRFIPPSNSFNSKKLSV
LIVIVLLGVIAFLAKPFEVISSGEIGIKITAGKYEPTPLQPGIHFFVPIIQDILIVDT
RIRNINFSRTEDMGVAGKNQGIFRNDAINVMDSRGLTVSIELTVQYRLNPQTTPQTIA
TYGLSWEQKIINPVVRDVVRSVVGRYPAEDLPIKRNEIAALINSGINKEVSKLPNTPV
ELSSIQLREIVLPAKIKEQIEKVQIARQESERVKYEVERSKQEAQKQAALAKGEADAN
RIKAQGVADAIVIEAKAKSQANLSISQSLSDKLLRLRQIEVQGQFNEALKTNNNAQIM
LTPGGAVPNIWIDTKSKVKSSVAESKEP"
misc_feature 249650..250519
/locus_tag="hp2018_0258"
/note="Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones]; Region: HflC; COG0330"
/db_xref="CDD:223407"
misc_feature 249674..250258
/locus_tag="hp2018_0258"
/note="SPFH domain / Band 7 family; Region: Band_7;
pfam01145"
/db_xref="CDD:216327"
gene 250583..251122
/locus_tag="hp2018_0259"
/db_xref="GeneID:12371448"
CDS 250583..251122
/locus_tag="hp2018_0259"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791074.1"
/db_xref="GI:385231155"
/db_xref="GeneID:12371448"
/translation="MASLAFVQAFLESFKGFLSQATLISVLIASVLILFCAILLLLAL
LLRNRWASYIATAAFLGAFLSMPFVLNILLTQAIYPIETRILHANPLSYSNAFSLQVG
VKNISKFSLNKCVLRLEVLKNPHNFVEERAFKWFVKKSYEKTFKEKILPEESKVFSFF
IDDYPYSKTAPYQVSLFCL"
misc_feature 250721..251119
/locus_tag="hp2018_0259"
/note="Protein of unknown function (DUF2393); Region:
DUF2393; pfam09624"
/db_xref="CDD:204274"
misc_feature complement(251205..252755)
/note="potential frameshift: common BLAST hit:
gi|383750099|ref|YP_005425202.1| oligopeptide permease
ATPase protein"
gene complement(251205..251564)
/gene="oppD1"
/locus_tag="hp2018_02601"
/db_xref="GeneID:12371449"
CDS complement(251205..251564)
/gene="oppD1"
/locus_tag="hp2018_02601"
/codon_start=1
/transl_table=11
/product="Oligopeptide transport ATP-binding protein"
/protein_id="YP_005791075.1"
/db_xref="GI:385231156"
/db_xref="GeneID:12371449"
/translation="MCLNHELLNFYAYELSGGERQRVAIARAIALKPKIILLDEPTSA
LDKSIQKSVLELLLNLQEKQDLSYLFISHDLDVIKAFCDRVLVVSEGKIVETGAIEEV
FDNPKHAYTKRLLESRL"
misc_feature complement(251274..>251558)
/gene="oppD1"
/locus_tag="hp2018_02601"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(251493..251522)
/gene="oppD1"
/locus_tag="hp2018_02601"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(251445..251462)
/gene="oppD1"
/locus_tag="hp2018_02601"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(251427..251438)
/gene="oppD1"
/locus_tag="hp2018_02601"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(251340..251360)
/gene="oppD1"
/locus_tag="hp2018_02601"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(<251214..251291)
/gene="oppD1"
/locus_tag="hp2018_02601"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene complement(251565..252755)
/gene="oppD2"
/locus_tag="hp2018_02602"
/db_xref="GeneID:12371450"
CDS complement(251565..252755)
/gene="oppD2"
/locus_tag="hp2018_02602"
/codon_start=1
/transl_table=11
/product="Oligopeptide transport ATP-binding protein"
/protein_id="YP_005791076.1"
/db_xref="GI:385231157"
/db_xref="GeneID:12371450"
/translation="MLEIKNLNCVLNPHFSLQNINISLSYGERVAIVGESGSGKSSIA
NLIMRLNPRFKPHNGEILFETTNLLKESEAFMQHLRGNIIAYIAQDPLSSLNPLHKIG
KQLSEAYFLHHKNASQTLLKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGI
INAPKLLICDEPTTALDAQIQNQILDLLKQLSVEKNIALLFISHDLKAVKRLADRVYV
LKKGEIVETNSTKELFKDPKHEYSKLLIQASNLPAKNLKALDETLLEVKDFSVYYLQK
RFFKSSLKKPLIASVNFSLKAKENIGIIGESGSGKSSLALGLLKLALNSGEEKILGQS
VGLLNSKAFKPYRKILQMVFQDPYASLNPRLSIQSILIEALRFAYPKASKEEWHHLAE
LCLE"
misc_feature complement(252009..252755)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:31321"
misc_feature complement(252072..252755)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(252633..252656)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(252144..252146,252243..252248,
252489..252491,252630..252638,252642..252647))
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(252489..252500)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(252291..252320)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(252243..252260)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(252225..252236)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(252138..252158)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(<252012..252089)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
misc_feature complement(<251598..251969)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(251820..251843)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(251691..251693,251817..251825,
251829..251834))
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(251691..251702)
/gene="oppD2"
/locus_tag="hp2018_02602"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
gene complement(252765..253787)
/locus_tag="hp2018_0261"
/db_xref="GeneID:12371451"
CDS complement(252765..253787)
/locus_tag="hp2018_0261"
/codon_start=1
/transl_table=11
/product="ABC transporter,permease"
/protein_id="YP_005791077.1"
/db_xref="GI:385231158"
/db_xref="GeneID:12371451"
/translation="MSVSSLFKMRILSFKKNKRAVFSLYLFIALLALSLLAPLWVNDR
PLFIYKDHKAYFPMFKNYAEVEFGGDFFTPTDYNDPYVQNTLLKDAFIIHALIPYSYN
TIIMDLDSPAPNPPSFKHLLGTDDQARDVLARLVYGYRVSLVFGILLTLFSVLIGVSL
GAFQGYYGGLVDLVGQRLSEIWSAIPMLFLLIVISSTFNSNFWIILFLVLLFSWMGLS
QVVRTEFLKARNMDYTKAARALGVNDLKIIFYHVLPNALVATITYIPFLMAASISTLV
SLDFLGFGMPIGSASLGELVNQGKDNLTTPHLAVVAFVAISLLLSVLVFIGEGVRDAF
NANMLK"
misc_feature complement(252768..253787)
/locus_tag="hp2018_0261"
/note="ABC-type uncharacterized transport system, permease
component [General function prediction only]; Region:
COG4239"
/db_xref="CDD:33962"
misc_feature complement(252819..253373)
/locus_tag="hp2018_0261"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(252819..252824,252831..252836,
252843..252848,252852..252857,252864..252869,
252897..252902,252948..252953,252960..252971,
252990..252992,252999..253004,253044..253046,
253095..253097,253104..253109,253119..253121,
253125..253130,253137..253139,253143..253145,
253149..253154,253203..253205,253209..253214,
253221..253250,253254..253265,253293..253295,
253308..253313,253320..253325))
/locus_tag="hp2018_0261"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(252954..252971,253203..253247))
/locus_tag="hp2018_0261"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(252867..252869,252897..252899,
252906..252908,252951..252953,253167..253169,
253203..253205))
/locus_tag="hp2018_0261"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(253023..253025,253035..253040,
253056..253094))
/locus_tag="hp2018_0261"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(253888..253964)
/locus_tag="hp2018_t09"
/db_xref="GeneID:12371452"
tRNA complement(253888..253964)
/locus_tag="hp2018_t09"
/product="tRNA-Ala"
/db_xref="GeneID:12371452"
gene 254127..255569
/locus_tag="hp2018_0262"
/db_xref="GeneID:12371453"
CDS 254127..255569
/locus_tag="hp2018_0262"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005791078.1"
/db_xref="GI:385231159"
/db_xref="GeneID:12371453"
/translation="MKNHSFKKTIALSLLASMSLCNAEEDGAFFVIDYQTSLARQELK
NPGFTQVQELKQLIRDGAVRLQTSAIPLSYYLDILGNKTKTLLSESLKNNTQPSQPNG
QPNQALVNLEQSLGILGKLLDLSQQYASEGVIKPLVVDVGKEQIGITDSMLLVAQNIV
LALGQVDLSKIQQNNNEQLYQNIMKVMLLGTGGTNGAYNGVSVGDIATGMQNFSSQTG
LIGANSTVSELNALIKSGISLDRETLRLGSFIEKNICSNASSCFSGSQLIYKQGLDRV
INIINTSLSQFEYSASSLYKISYIPNLFSLRDYQSASMNGFGAKMGYKQFFTHKKNIG
LRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQI
AGQTWSTNVTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIP
VIAHKYFATQGSSASYMRNFSFYVGYSVGF"
misc_feature 255078..255566
/locus_tag="hp2018_0262"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 255582..256994
/locus_tag="hp2018_0263"
/db_xref="GeneID:12371454"
CDS 255582..256994
/locus_tag="hp2018_0263"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005791079.1"
/db_xref="GI:385231160"
/db_xref="GeneID:12371454"
/translation="MKNTNTKEIKNTRMKKGQYHALKKGLLKTALLFSLPLSMALAED
DGFYMGVGYQIGGAQQNINNKGSTLRNNVIDDFRQVGVGMAGGNGLLTLATNTTMDAL
LGIGNQIINTNKAVDNNNAELTQFKKILPQIEQRFEADKNAYSVQALQVYLSNVLYNL
VNNNNNGSNNGVVPEYVGIIKVLYGSQSEFSLLATESVALLNALTRVNLDSNSVFLKG
LLAQMQLFNDTSAAKLGQIAEGLNKSGGAGAMLQKDVKTISDRIATYQENLKQLGGML
NNYDEPYLPQFGPGQSSQHGVINGFGIQMGYKQFFGSKKNIGLRYYAFFDYGFTQLGS
LSSAVKANIFTYGAGTDFLWNIFRRVFSDQSLNVGVFGGIQIAGNTWDSSLRNQIKDS
FKENPTPTNFQFLFNLGLRAHFASTMHRRFLSASQSIQHGMEFGVKIPAINQRYLRAN
GADVDYRRSYAFYINYTIGF"
misc_feature 256485..256991
/locus_tag="hp2018_0263"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 257093..258328
/gene="purA"
/locus_tag="hp2018_0264"
/db_xref="GeneID:12371455"
CDS 257093..258328
/gene="purA"
/locus_tag="hp2018_0264"
/EC_number="6.3.4.4"
/codon_start=1
/transl_table=11
/product="adenylosuccinate synthetase"
/protein_id="YP_005791080.1"
/db_xref="GI:385231161"
/db_xref="GeneID:12371455"
/translation="MADVVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVH
KGVKHSLHLMPSGVLYHKCKNIISSAVVVSIKDLCEEISAFEDLENRLFISDRAHVIL
PYHAKKDAFKEKSQNIGTTKKGIGPCYEDKMARSGIRMGDLLDDTILEEKLNAHFKAI
EPFKEAYDLGEDYEKDLREYFKTYAPKICPFIKDTTSMLIEANQKGEKILLEGAQGTL
LDIDLGTYPFVTSSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTP
MGDHLRTKGAEFGTTTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKV
CVAYERKGERLEAFPSDLKGCVPIYQTFKGWEKSVGVRKLDDLEPNAREYIRFIEKEV
GVKIGLISTSPEREDTIFL"
misc_feature 257096..258322
/gene="purA"
/locus_tag="hp2018_0264"
/note="Adenylosuccinate synthetase; Region:
Adenylsucc_synt; smart00788"
/db_xref="CDD:197875"
misc_feature 257096..258301
/gene="purA"
/locus_tag="hp2018_0264"
/note="Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the...; Region: AdSS;
cd03108"
/db_xref="CDD:73337"
misc_feature order(257126..257128,257132..257140,257207..257215,
257219..257221,258056..258058,258062..258064,
258296..258301)
/gene="purA"
/locus_tag="hp2018_0264"
/note="GDP-binding site [chemical binding]; other site"
/db_xref="CDD:73337"
misc_feature order(257132..257134,257141..257143,257210..257212)
/gene="purA"
/locus_tag="hp2018_0264"
/note="ACT binding site; other site"
/db_xref="CDD:73337"
misc_feature order(257201..257203,257444..257446,257453..257455,
257735..257737,257780..257782)
/gene="purA"
/locus_tag="hp2018_0264"
/note="IMP binding site; other site"
/db_xref="CDD:73337"
gene 258325..258753
/locus_tag="hp2018_0265"
/db_xref="GeneID:12371456"
CDS 258325..258753
/locus_tag="hp2018_0265"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791081.1"
/db_xref="GI:385231162"
/db_xref="GeneID:12371456"
/translation="MKKFASVLVQLKTLALEKIEQKLESKRLKLQQNEREILDKQAQL
SAFKNPELGGMSLFLQTQQLKSALRMEIEHYQQESENLNKDLKILEKDYLLANQELEK
AKIILENEKQKEKEILEKKEQALLDESAMILHWQKGGLHA"
misc_feature 258373..>258630
/locus_tag="hp2018_0265"
/note="Flagellar FliJ protein; Region: FliJ; pfam02050"
/db_xref="CDD:202101"
gene 258746..259414
/gene="flbB"
/locus_tag="hp2018_0266"
/db_xref="GeneID:12371457"
CDS 258746..259414
/gene="flbB"
/locus_tag="hp2018_0266"
/codon_start=1
/transl_table=11
/product="Flagellar protein"
/protein_id="YP_005791082.1"
/db_xref="GI:385231163"
/db_xref="GeneID:12371457"
/translation="MRKILLMGLILQALFSEEAAQELLQCSAIFESKKAELKDDLRQL
SEKEQSLRILQTENARLLDEKSGLLNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLK
NLIEENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELG
KILAKMDPKKAAALTELWQKPPKENKENKESQKTTDPTPPTPPTPPKEPTLKDPNTKE
PAGV"
misc_feature 258746..259282
/gene="flbB"
/locus_tag="hp2018_0266"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3334"
/db_xref="CDD:33143"
gene 259411..260466
/locus_tag="hp2018_0267"
/db_xref="GeneID:12371458"
CDS 259411..260466
/locus_tag="hp2018_0267"
/codon_start=1
/transl_table=11
/product="Membrane-associated zinc metalloprotease"
/protein_id="YP_005791083.1"
/db_xref="GI:385231164"
/db_xref="GeneID:12371458"
/translation="MMFIVAVLMLAFLIFVHELGHFVIARICGVKVEVFSIGFGKKLW
FFKLFGTQFALSLIPLGGYVKLKGMDKEENEENEINQANDSYAQKSPFQKLWILFGGA
FFNFLFAVLVYFFLALSGEKVLLPIIGGLEKNALEAGLLKGDRILSINHQKIASFGEI
RGIVARSQGELILEIERNNQILEKRLTPKIVAVISESNDPNEIIKYKAIGIKPDMQKM
GVVSYSVFQAFEKALSRFKEGVVLIVDSLRRLIMGSASVKELSGVIGIVGALSHANSV
SMLLLFGAFLSINLGILNLLPIPALDGAQMLGVVFKNIFHIALPTPIQNALWLVGVGF
LVFIMFLGLFNDITRLL"
misc_feature 259411..260463
/locus_tag="hp2018_0267"
/note="Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane];
Region: COG0750"
/db_xref="CDD:31093"
misc_feature 259417..>259701
/locus_tag="hp2018_0267"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature order(259459..259464,259471..259473)
/locus_tag="hp2018_0267"
/note="active site"
/db_xref="CDD:100084"
misc_feature 259768..259974
/locus_tag="hp2018_0267"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature <260239..260457
/locus_tag="hp2018_0267"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:209123"
misc_feature 260290..260301
/locus_tag="hp2018_0267"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene 260479..261741
/gene="xseA"
/locus_tag="hp2018_0268"
/db_xref="GeneID:12371459"
CDS 260479..261741
/gene="xseA"
/locus_tag="hp2018_0268"
/EC_number="3.1.11.6"
/codon_start=1
/transl_table=11
/product="Exodeoxyribonuclease VII large subunit"
/protein_id="YP_005791084.1"
/db_xref="GI:385231165"
/db_xref="GeneID:12371459"
/translation="MHVLSVSEINAQIKALLEATFLQVRVQGEVSNLTIHKVSGHAYF
SLKDSQSVIKCVLFKGNANRLKFALKEGQEVVVFGGISVYVPRGDYQINCFEIEPKDI
GSLTLALEQLKEKLRLKGYFDEANKLPKPNFPKRVAVITSQNSAAWADMQKIASKRWP
MCELVCINTLMQGEGCVQSVVESIAYADSFHDTKNAFDAIVVARGGGSMEDLYSFNDE
KIADALYLAKTFSMSAIGHESDFLLSDLVADLRASTPSNAMEILLPNSDEWLQRLDGF
NVKLRHSFKTLLHQKKAHLEHLAASLKRLSFENKHHLNALKLEKLTIALENKTLEFLR
FKKMLLEKISIQVLTSPFLQTKTEHLNRLENALKLAYANLKLPQFGAFVSKNDQAIGL
EALKMGDKIELNNEKARASAEILSVDRV"
misc_feature 260491..261738
/gene="xseA"
/locus_tag="hp2018_0268"
/note="exodeoxyribonuclease VII, large subunit; Region:
xseA; TIGR00237"
/db_xref="CDD:161783"
misc_feature 260545..260775
/gene="xseA"
/locus_tag="hp2018_0268"
/note="ExoVII_LU_OBF: A subfamily of OB folds
corresponding to the N-terminal OB-fold domain of
Escherichia coli exodeoxyribonuclease VII (ExoVII) large
subunit. E. coli ExoVII is composed of two non-identical
subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF;
cd04489"
/db_xref="CDD:72961"
misc_feature order(260551..260553,260698..260700,260704..260706,
260710..260712,260770..260772)
/gene="xseA"
/locus_tag="hp2018_0268"
/note="generic binding surface II; other site"
/db_xref="CDD:72961"
misc_feature order(260566..260574,260605..260616,260620..260622,
260638..260646,260650..260652,260695..260697,
260716..260724,260749..260757)
/gene="xseA"
/locus_tag="hp2018_0268"
/note="generic binding surface I; other site"
/db_xref="CDD:72961"
gene complement(261760..262932)
/locus_tag="hp2018_0269"
/db_xref="GeneID:12371460"
CDS complement(261760..262932)
/locus_tag="hp2018_0269"
/EC_number="2.1.1.72"
/codon_start=1
/transl_table=11
/product="Type III restriction-modification system
methylation subunit"
/protein_id="YP_005791085.1"
/db_xref="GI:385231166"
/db_xref="GeneID:12371460"
/translation="MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHA
DYEKWIEEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANKIFGMRNFLGTFITKQAT
RSNAKHINITHEYVLSYAKNKAFAPGFKILRTLLPIYAKPLKDLMRTIKNVFKQKGQA
QAQLVLKEQIKELSQKEHFNFLKNYNLVDEKGEIYFAKDLSTPSNPRSVAIQEINLFL
EPLKSRGWSSDEKLKELYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFYSRQGTKDL
EKLGLKGLFKTPKPVGLIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEANKDYYLNWS
FYLCQKEEKIKNNPQAASILKNKGYQNTISNIMLLRLEKIIKRSEYEILKTKSIVF"
misc_feature complement(261769..>262887)
/locus_tag="hp2018_0269"
/note="Adenine specific DNA methylase Mod [DNA
replication, recombination, and repair]; Region: COG2189"
/db_xref="CDD:32372"
misc_feature complement(<262552..262872)
/locus_tag="hp2018_0269"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
misc_feature complement(261943..>262242)
/locus_tag="hp2018_0269"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(262925..263014)
/locus_tag="hp2018_0270"
/db_xref="GeneID:12371461"
CDS complement(262925..263014)
/locus_tag="hp2018_0270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791086.1"
/db_xref="GI:385231167"
/db_xref="GeneID:12371461"
/translation="MKPIDSKEQELINLFNLKFGRFSWENYLA"
misc_feature 263242..263759
/note="potential frameshift: common BLAST hit:
gi|208434208|ref|YP_002265874.1| type II DNA modification
enzyme"
gene 263242..263361
/locus_tag="hp2018_02711"
/db_xref="GeneID:12371462"
CDS 263242..263361
/locus_tag="hp2018_02711"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791087.1"
/db_xref="GI:385231168"
/db_xref="GeneID:12371462"
/translation="MFRLSLTDIILERFKDFMREYPEPYKFYRFFTRKKKNAF"
gene 263370..263759
/locus_tag="hp2018_02712"
/db_xref="GeneID:12371463"
CDS 263370..263759
/locus_tag="hp2018_02712"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791088.1"
/db_xref="GI:385231169"
/db_xref="GeneID:12371463"
/translation="MNDYIKQNKSKEEASILARQGFVSTVGRALEKIIELLLKDFCIK
NNVKMTNDKILRAKRINGELDKVKRALLVHFGEYSVLPDIILYQTNKDNIKILVILSV
KNSFRERFTKDALLEIKTPTIACNFSH"
gene 263767..263940
/locus_tag="hp2018_0272"
/db_xref="GeneID:12371464"
CDS 263767..263940
/locus_tag="hp2018_0272"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791089.1"
/db_xref="GI:385231170"
/db_xref="GeneID:12371464"
/translation="MITPDNDNKISFKDRPKKARIVMEHELEGLYLAKSHFDQSPKIK
GIENLLEDLKRLL"
gene 263937..264695
/gene="hpaim"
/locus_tag="hp2018_0273"
/db_xref="GeneID:12371465"
CDS 263937..264695
/gene="hpaim"
/locus_tag="hp2018_0273"
/codon_start=1
/transl_table=11
/product="adenine specific DNA methyltransferase"
/protein_id="YP_005791090.1"
/db_xref="GI:385231171"
/db_xref="GeneID:12371465"
/translation="MKPYFSLEKLDLYHGDASVLETFEKGFYDLCVTSPPYNLSIEYQ
GSNDFRAYDDYLNWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKE
CGWKYQNTIIWNESNISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRKKQTSTMS
KEEFLLYTNGLWNFSGESKKRLKHPAPFPRELPKRCIQLFSFLEDTIFDPFSGSGTTI
LEANALGRFSVGLEIEKEYCELSKKRILESLSLV"
misc_feature 263970..264686
/gene="hpaim"
/locus_tag="hp2018_0273"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature 264021..264665
/gene="hpaim"
/locus_tag="hp2018_0273"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene 264768..267338
/locus_tag="hp2018_0274"
/db_xref="GeneID:12371466"
CDS 264768..267338
/locus_tag="hp2018_0274"
/codon_start=1
/transl_table=11
/product="ClpB protein"
/protein_id="YP_005791091.1"
/db_xref="GI:385231172"
/db_xref="GeneID:12371466"
/translation="MNLFEKMTDQLHEALDSALALALHYKNAEVTPMHMLFAMLNNSQ
GILLQALQKMPVDIEALKLSVQSELNKFAKVSQISKQNIQLNQALIQSLENAQGLMAK
TGDSFIATDAYLLANMNLFESVLKPYLDTKELQKTLESLRKGRTIQDKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLA
QRIVNKEVPKTLLNKRVVALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDE
IHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKDMALQRRFQPIL
LNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLID
EGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKE
KKIQLEAQFENEKEVFKEISRLKMEMESLKKEAERFKRNGDYQQAAEIEYSKIPEKEK
KEKELQHKWETMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESEL
QKRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFD
SDKNLIRIDMSEYMEKHAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKA
HPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGALLEEDLSEADKQKAIK
ESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENIQKKALERGINITLDEKAK
ELIAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK
"
misc_feature 264786..267323
/locus_tag="hp2018_0274"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:163223"
misc_feature 264819..264977
/locus_tag="hp2018_0274"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 265302..265769
/locus_tag="hp2018_0274"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 265377..265400
/locus_tag="hp2018_0274"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(265380..265403,265590..265592,265701..265703)
/locus_tag="hp2018_0274"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 265578..265595
/locus_tag="hp2018_0274"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 265752..265754
/locus_tag="hp2018_0274"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 266550..266957
/locus_tag="hp2018_0274"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 266580..266603
/locus_tag="hp2018_0274"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(266583..266606,266796..266798,266922..266924)
/locus_tag="hp2018_0274"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 266784..266801
/locus_tag="hp2018_0274"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 267057..267293
/locus_tag="hp2018_0274"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene 267395..268114
/gene="ccdA"
/locus_tag="hp2018_0275"
/db_xref="GeneID:12371467"
CDS 267395..268114
/gene="ccdA"
/locus_tag="hp2018_0275"
/codon_start=1
/transl_table=11
/product="Cytochrome c-type biogenesis protein"
/protein_id="YP_005791092.1"
/db_xref="GI:385231173"
/db_xref="GeneID:12371467"
/translation="MFDNTLINLFETVPLLTSLLAGILTFLSPCVLPLIPAYMSYISQ
ISLEDIKDGKAKRVSVFLKSLMFVVGFSLVFLGVGMSMAKLIHSFSFAWVNYIAGGIV
ILFGLHFLGVFRFSFLYKTQSVRLASKSNSMQRFYPFLLGMSFALGWTPCVGPIFTSI
VIMSASKDAYGLMLMVVFVMGLAIPFLLVALMLERALLFLKSLKKYNRAIEIVSGLVL
ILMGILIMTNSLESLTNFLQN"
misc_feature 267446..268027
/gene="ccdA"
/locus_tag="hp2018_0275"
/note="Cytochrome C biogenesis protein transmembrane
region; Region: DsbD; pfam02683"
/db_xref="CDD:111569"
gene 268124..269260
/locus_tag="hp2018_0276"
/db_xref="GeneID:12371468"
CDS 268124..269260
/locus_tag="hp2018_0276"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="YP_005791093.1"
/db_xref="GI:385231174"
/db_xref="GeneID:12371468"
/translation="MLLKNASFYDDEVLKRADIRLKDSLIIEIEENLSPINNEEVVEC
GNLFVLPSFIDLSVTDLEGYENLKQKAFKGGVGLLNVFNGDQSGIKNIMALKNNQLAD
IATLKNKGGEILIAPSDAFLELISHYAKSYNLPLLISLENSFEALNSGALAYELGQNF
VENAFENTRLVRFMEVSRALQIPVLLDKVNSIATLKLIKAFNDLGAKLQAQTPLSHLI
LDESVYEDYEPRFKIAPPLRDKEGQNALKEALKNNEIAMLTSLHASKNSNAELFEESA
FGCESIEDAFSVAYTFLVQKKVISFQQLIKVMAINQAKFLKLNAGEVKENQLANLMIV
DLNAQTRVSNQNSPFYGLELYGEVQRMILKGQTTFIKENACKKS"
misc_feature 268124..269254
/locus_tag="hp2018_0276"
/note="Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism]; Region: PyrC;
COG0044"
/db_xref="CDD:30393"
misc_feature 268124..>268297
/locus_tag="hp2018_0276"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature 268235..269197
/locus_tag="hp2018_0276"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature order(268292..268294,268538..268540,268685..268687,
268904..268906)
/locus_tag="hp2018_0276"
/note="active site"
/db_xref="CDD:30035"
gene 269245..270474
/locus_tag="hp2018_0277"
/db_xref="GeneID:12371469"
CDS 269245..270474
/locus_tag="hp2018_0277"
/codon_start=1
/transl_table=11
/product="chlorohydrolase like protein"
/protein_id="YP_005791094.1"
/db_xref="GI:385231175"
/db_xref="GeneID:12371469"
/translation="MQEIIGASLVFLCNEKCEVLEDCGVVFDEKIVEIGDYHNLTLKY
PHLKAQFFENSILLPAFINAHTHFEFSNNKASFDYGSFSGWLGSVLNNGGAILENCQG
AIQNAIITQLKSGVGSVGAISNHLIEVNLLKESPLNAVVFLEFLGSSYSLEKLKAFEA
KFKELKDLEDQKLKAALAVHAPYSVQKDMALSVIQLAKDSQSLLSTHFLESFEELEWV
ENSKGWFENFYQHFLKESNFTSLYEGANDYIDMFKDTHTLFVHNQFASLEVLKRIKSQ
VKNAFLITCPFSNRLLSGKALDLERVREAGLSVSVATDGLSSNVSLSLLDELRAFLLT
HNMPLLELAKIALLGATRHGAKALALNNGEIEANKRADLSVFGFNEKFTKEQAILQFL
LHAKEVERLFLGGKRVI"
misc_feature 269248..270471
/locus_tag="hp2018_0277"
/note="chlorohydrolase; Provisional; Region: PRK08418"
/db_xref="CDD:181419"
misc_feature 269329..270462
/locus_tag="hp2018_0277"
/note="Metallo-dependent hydrolases, subgroup D is part of
the superfamily of metallo-dependent hydrolases, a large
group of proteins that show conservation in their
3-dimensional fold (TIM barrel) and in details of their
active site. The vast majority of the...; Region:
Met_dep_hydrolase_D; cd01312"
/db_xref="CDD:30055"
misc_feature order(269437..269439,269443..269445,269863..269865,
270025..270027,270184..270186)
/locus_tag="hp2018_0277"
/note="active site"
/db_xref="CDD:30055"
gene 270708..270950
/locus_tag="hp2018_0278"
/db_xref="GeneID:12371470"
CDS 270708..270950
/locus_tag="hp2018_0278"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791095.1"
/db_xref="GI:385231176"
/db_xref="GeneID:12371470"
/translation="MKLVLAKNTRKSDAKSVELEDLYKKFNEDKRSIFYLAPTNAHKD
MLKAVDFFKEKGHTAYLDEVRVSTDEKDFLYELHII"
gene 270960..272273
/locus_tag="hp2018_0279"
/db_xref="GeneID:12371471"
CDS 270960..272273
/locus_tag="hp2018_0279"
/codon_start=1
/transl_table=11
/product="tRNA-i(6)A37 methylthiotransferase"
/protein_id="YP_005791096.1"
/db_xref="GI:385231177"
/db_xref="GeneID:12371471"
/translation="MKVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILIN
TCSVREKPERKLFSEIGQFAKIKKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARN
VSKISQVIHKEKAVEVAIDYDESAYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHT
RGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVGFSDLLDKLS
EIQGIERIRFTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKE
WFLNRVERLKALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRP
FTEAGAWKERVPLEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIV
GFEGRSDTGKFIEVTCKEKRNPGELVRVEIISHSKGRLIAAIKGN"
misc_feature 270963..271256
/locus_tag="hp2018_0279"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature 270993..272267
/locus_tag="hp2018_0279"
/note="(dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional; Region: PRK14339"
/db_xref="CDD:184634"
misc_feature 271383..271973
/locus_tag="hp2018_0279"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(271401..271403,271407..271409,271413..271415,
271419..271427,271527..271529,271566..271571,
271644..271649,271653..271655,271722..271724,
271854..271856,271944..271949)
/locus_tag="hp2018_0279"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 272312..272965
/locus_tag="hp2018_0280"
/db_xref="GeneID:12371472"
CDS 272312..272965
/locus_tag="hp2018_0280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791097.1"
/db_xref="GI:385231178"
/db_xref="GeneID:12371472"
/translation="MSLKFFRKSIVLKVVPRLAFGVLWLLHKTCKNRYFLAQNLKEKP
FIVSCWHGELGMIGFAYLRLEKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGG
VKVLIEGLKRLKEGCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWR
LNTWDQFEIPKPFSEVRYYMLESVIIPKEWELSRAKEYLKRRMDSVGFEEPQRGLGA"
misc_feature 272378..272923
/locus_tag="hp2018_0280"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: DUF374; Region:
LPLAT_DUF374-like; cd07983"
/db_xref="CDD:153245"
misc_feature order(272462..272464,272471..272473,272477..272479,
272528..272539,272684..272692)
/locus_tag="hp2018_0280"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153245"
gene 272958..273941
/locus_tag="hp2018_0281"
/db_xref="GeneID:12371473"
CDS 272958..273941
/locus_tag="hp2018_0281"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791098.1"
/db_xref="GI:385231179"
/db_xref="GeneID:12371473"
/translation="MLKGLKKALKEKFCSQVYISFNVDHNLLSAQVLRVKNHRIKEKF
FKTFETKVETKNGEVPIQALKIARTYSQKYPYTYFSAMSKAKEILCEKQAFEQIKQEN
QDYQACEVNQKYCVYVESKDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLY
LLLERSRFYFLIADKKEIFLAKSVFLEEQPEEFIEGKEEDSMGMSNEAVNLFLSEIQE
DIDSLEEAIGLDSSKDNSEKITEDAYSLIEGMTNIPLIADVLQEGLRGVYHSREIDFV
EKVVVLDSCQIHQKALMHLQETLMIEVDRLDFSLVERLNILARMENEKHAF"
gene 273931..274464
/locus_tag="hp2018_0282"
/db_xref="GeneID:12371474"
CDS 273931..274464
/locus_tag="hp2018_0282"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791099.1"
/db_xref="GI:385231180"
/db_xref="GeneID:12371474"
/translation="MRFSYIEPRVKYLISKLSKIWVFYIFLSFALIGGLVWFMHNAIK
RAQDNASSLTIQERLYRHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIV
PDLITINSIEIDQQSVVVSGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFV
STNFSNSLLIKNPESIK"
misc_feature <274075..>274281
/locus_tag="hp2018_0282"
/note="urocanate hydratase; Provisional; Region: PRK05414"
/db_xref="CDD:235448"
gene 274461..275000
/locus_tag="hp2018_0283"
/db_xref="GeneID:12371475"
CDS 274461..275000
/locus_tag="hp2018_0283"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791100.1"
/db_xref="GI:385231181"
/db_xref="GeneID:12371475"
/translation="MKPLHFSHLDREQSGDVGFIIKNLIFLGVFSLLGWLNTEYFLWP
SMLELKKILLEENRKKSVLEYAQRHFETALANYRNQKETSESLLKIFNDEESRRILEK
ILKKCFDAYKIKPLLSQNPSQKTQFFIMARASELEKTYLFFTLLNKYLPSAQSQLPLK
ISKDSDGLLVQFGVSIDLQ"
gene 275017..275415
/locus_tag="hp2018_0284"
/db_xref="GeneID:12371476"
CDS 275017..275415
/locus_tag="hp2018_0284"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791101.1"
/db_xref="GI:385231182"
/db_xref="GeneID:12371476"
/translation="MRDFDFSFNHRACEGCGAKCCVGESGYIFVTIQEMQQISAFLKL
ELEEFSQKYVKKVGYKFSLLEKDAKDLGLACVFLDLETKKCQIYSVRPKQCQTFPFWE
SVKTFSKEQKEAFCQSCPGIIRKTKETKVC"
misc_feature 275050..275376
/locus_tag="hp2018_0284"
/note="Flagellin N-methylase; Region: FliB; pfam03692"
/db_xref="CDD:112504"
gene 275452..276747
/locus_tag="hp2018_0285"
/db_xref="GeneID:12371477"
CDS 275452..276747
/locus_tag="hp2018_0285"
/codon_start=1
/transl_table=11
/product="Putative lipoprotein"
/protein_id="YP_005791102.1"
/db_xref="GI:385231183"
/db_xref="GeneID:12371477"
/translation="MNIQTKKRFLANLLLFSLFSCLKAETLSEDHQILLSSDAFHRGD
FATAQKGYMNLYKQTNKVVYAKEAAISAASLGDIKTAMHLAMLYQKITNNRNDVSINK
ILVDGYAQMGQIDKAIELLHKIRKEEKTIATDNVLGTLYLTQKRLDKAFPLLNKFYNQ
VHDEDSLEKLITIYFLQNRKKEGLDLLQSHIDRYGCSEQLCQKALNTFTQFNELDLAK
TTFARLYEKNPIVQNAQFYIGVLILLKEFDKAQQIAELFPFDRRLLLDLYTAQKKFDQ
ASKQASLIYQERKDPKFLGLEAIYHYESLSTNKKKLTKEEMLPIIQKLEQATKERQAW
LAKTKDKEDAQDAFFYNFLGYSLIDYDMDVKRGMDLVRKALALDSNSVLYLDSLAWGY
YKLGNCLEAKKIFSSIAKELIQNEPELKEHNKIIQECKK"
misc_feature <275578..>276033
/locus_tag="hp2018_0285"
/note="Predicted N-acetylglucosaminyl transferase
[Carbohydrate transport and metabolism]; Region: COG2956"
/db_xref="CDD:32776"
gene 276735..277292
/locus_tag="hp2018_0286"
/db_xref="GeneID:12371478"
CDS 276735..277292
/locus_tag="hp2018_0286"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791103.1"
/db_xref="GI:385231184"
/db_xref="GeneID:12371478"
/translation="MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRIIPQTK
NCVFVTPDEVLETLLKENTHTDCVIVNFKGLYEIGAPSVFDLEILGLLRRHASSLIVH
QDLFISHYQLLESLAQGSDGVILDEELLKEDLKGMIDFAWRLGLSVFVETRKPDYTHL
KDLGVLGVLEKNPHSYNQKKIVFLD"
misc_feature <276987..>277190
/locus_tag="hp2018_0286"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl09108"
/db_xref="CDD:213114"
gene 277349..277603
/locus_tag="hp2018_0287"
/db_xref="GeneID:12371479"
CDS 277349..277603
/locus_tag="hp2018_0287"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_005791104.1"
/db_xref="GI:385231185"
/db_xref="GeneID:12371479"
/translation="MSLLVNDECIACDACREECPSEAIEEGDPIYSIDPDRCTECYGY
DDDEPRCVSVCPVDAILPDPNNAESKEELKYKYEILKEQD"
misc_feature 277373..277522
/locus_tag="hp2018_0287"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:221801"
gene 277613..279067
/locus_tag="hp2018_0288"
/db_xref="GeneID:12371480"
CDS 277613..279067
/locus_tag="hp2018_0288"
/EC_number="3.6.1.11"
/codon_start=1
/transl_table=11
/product="Exopolyphosphatase"
/protein_id="YP_005791105.1"
/db_xref="GI:385231186"
/db_xref="GeneID:12371480"
/translation="MAKITTVIDIGSNSVRLAVFKKTSQFGFYLLFETKSRVRISEGC
YAFKGVLQEIPMQRAVKALSEFKEIALKYKSKKILCVATSAVRDAPNRLEFVARVKKA
CGLQIKIIDGQKEALYGGIACANLLHKNSGITIDIGGGSTECTLIEKGKIKDLISLDV
GTIRIKEMFLDKGLDVKLAKAFIQKEVSKLPFKHKNAFGVGGTIRALSKILMKRFDYP
IDSLHGYEIDAHKNLAFIEKIVMLKEDKLRLLGVNEERLDSIRSGALILSVVLEHLKT
SLMITSGVGVREGVFLSDLLRHHYHKFPPNINPSLISLKDRFLPHEKHSQKVKKECVK
LFEALSPLHKIDEKYLFHLKIAGELASMGKILSVYLAHKHSAYFILNALSYGFSHQDR
AIICLLAQFSHKKIPRDNAIAHMSAMMPSLLTLQWLSFILSLAENLCLTDSHHLKYTL
EKNKLVIHSNDALYLAKEMLPKLIKPIPLTIEFA"
misc_feature 277613..279061
/locus_tag="hp2018_0288"
/note="Exopolyphosphatase [Nucleotide transport and
metabolism / Inorganic ion transport and metabolism];
Region: GppA; COG0248"
/db_xref="CDD:30597"
misc_feature 277664..278506
/locus_tag="hp2018_0288"
/note="Ppx/GppA phosphatase family; Region: Ppx-GppA;
pfam02541"
/db_xref="CDD:202276"
gene 279064..280074
/gene="waac"
/locus_tag="hp2018_0289"
/db_xref="GeneID:12371481"
CDS 279064..280074
/gene="waac"
/locus_tag="hp2018_0289"
/codon_start=1
/transl_table=11
/product="Lipopolysaccharide heptosyltransferase I"
/protein_id="YP_005791106.1"
/db_xref="GI:385231187"
/db_xref="GeneID:12371481"
/translation="MKIAIVRLSALGDIIVSTVFLAAIKERFTDAQIEWFVDERFGAI
LEHSPYIDKLHPIPLKSALTTFNPLKIFKLFKSLRAYEYDIIIDMQGLIKSALITQTL
KAPKKVGFDYASAREGLSAFFYSQKVSIAYDEPILKRNSTLLSQALNLPEKEISEGLS
SRAKAFSYQPSPKINALNLNQNKPKILFVLETSKINKTYPTERFKELALMLENFQICL
LWHADEKKAITLYHALKHQRDVLLLPKLTLNEVKALLFKMDVIIGGDTGITHLAWALQ
KPSITLYGNTPMERFKLESLINVSLTGNSNASYHKKDFSIQNIEPKKIKECVLNVLKE
KE"
misc_feature 279067..279936
/gene="waac"
/locus_tag="hp2018_0289"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature 279274..280035
/gene="waac"
/locus_tag="hp2018_0289"
/note="Glycosyltransferase family 9 (heptosyltransferase);
Region: Glyco_transf_9; pfam01075"
/db_xref="CDD:110100"
misc_feature order(279625..279630,279718..279720,279814..279819,
279853..279855,279862..279867,279874..279876)
/gene="waac"
/locus_tag="hp2018_0289"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene 280071..281057
/gene="waaM"
/locus_tag="hp2018_0290"
/db_xref="GeneID:12371482"
CDS 280071..281057
/gene="waaM"
/locus_tag="hp2018_0290"
/codon_start=1
/transl_table=11
/product="Lipid A biosynthesis lauroyl acyltransferase"
/protein_id="YP_005791107.1"
/db_xref="GI:385231188"
/db_xref="GeneID:12371482"
/translation="MTYKERLIHEKILNQNDKGFKTELRILSVFIVEFLVNILGFMLA
KMPHFWFLRCIKALAWLMRTFDRRRYFDAKANLDFVFGDSKSEEEKKRIIKKGYENFA
FIILETIRVIFIPKAEYDARFTLINEENIWKSLNKEGQAITLCMHFGYWEAVGTTLAQ
YYKDYGRGCLGRLTKFAPINHMIMSRREAFGVRFVNKIGAMKELIKMYNQGNGLVGIL
VDQNVVPKDGVVVKFFNKDATHTTIASILSRRYNIDIQPVFIDFNDDYSHYTATYYPS
IRSQITDNAENDILECTQAQASLCEEVIRNHPESYFWFHRRFKSTHPEIYQR"
misc_feature 280119..281030
/gene="waaM"
/locus_tag="hp2018_0290"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature 280428..281027
/gene="waaM"
/locus_tag="hp2018_0290"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature order(280509..280511,280518..280520,280524..280526,
280581..280592,280731..280739)
/gene="waaM"
/locus_tag="hp2018_0290"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
misc_feature complement(281316..282427)
/note="potential frameshift: common BLAST hit:
gi|15611336|ref|NP_222987.1| queuine
tRNA-ribosyltransferase"
gene complement(281316..281486)
/gene="tgt1"
/locus_tag="hp2018_02911"
/db_xref="GeneID:12371483"
CDS complement(281316..281486)
/gene="tgt1"
/locus_tag="hp2018_02911"
/EC_number="2.4.2.29"
/codon_start=1
/transl_table=11
/product="tRNA-guanine transglycosylase"
/protein_id="YP_005791108.1"
/db_xref="GI:385231189"
/db_xref="GeneID:12371483"
/translation="MHHLFRAKELTYARLASLHNLHFYLELVKNARKAILEKRFLSFK
KEFLKKYHSCSH"
misc_feature complement(281337..>281483)
/gene="tgt1"
/locus_tag="hp2018_02911"
/note="queuine tRNA-ribosyltransferase; Provisional;
Region: tgt; cl00409"
/db_xref="CDD:207035"
gene complement(281441..282427)
/gene="tgt2"
/locus_tag="hp2018_02912"
/db_xref="GeneID:12371484"
CDS complement(281441..282427)
/gene="tgt2"
/locus_tag="hp2018_02912"
/EC_number="2.4.2.29"
/codon_start=1
/transl_table=11
/product="tRNA-guanine transglycosylase"
/protein_id="YP_005791109.1"
/db_xref="GI:385231190"
/db_xref="GeneID:12371484"
/translation="MDFQLQAVDDNARAGVLNLAHSQVETPVFMPVGTQGCIKSLDAM
DMQEILGAKLILANTYHMYLRPGEKVVEQLGGLHRFAQFHGSFLTDSGGFQAFSLSDN
VKLQEDGIIFKSHIDGSKHLFTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESI
KRSAKWANLSLEYHKENNRPNNNLFAIIQGGTHLKMRSLSVELTHGGFDGYAIGGLAV
GESVDEMLETIAHTAPLLPKDKPRYLMGVGTPENILDAISLGVDMFDCVMPTRNARNA
TLFTHFGKISIKNAPYKLDDLLKKIVLVMLANAILKPICTISLGLKNSLTLV"
misc_feature complement(<281552..282427)
/gene="tgt2"
/locus_tag="hp2018_02912"
/note="queuine tRNA-ribosyltransferase; Provisional;
Region: tgt; cl00409"
/db_xref="CDD:207035"
misc_feature complement(<281552..282421)
/gene="tgt2"
/locus_tag="hp2018_02912"
/note="tRNA-guanine transglycosylases, various
specificities; Region: tgt_general; TIGR00449"
/db_xref="CDD:129541"
gene 282484..283920
/locus_tag="hp2018_0292"
/db_xref="GeneID:12371485"
CDS 282484..283920
/locus_tag="hp2018_0292"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791110.1"
/db_xref="GI:385231191"
/db_xref="GeneID:12371485"
/translation="MKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKDESLIPKNY
PSTFAFHCFDATSSFRLLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMRVVLSV
KRDSEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDV
PFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVY
LQVKSNVGQFPAPFGKSIYLYIDMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHP
TSPKFYHKFLSLETESIEVNFDFYGKSFIQKLHEDHQKKMGLIVVGRELFFLKKHRRA
LHKTATPVYKTNTSGLSKTTQSIVVLNESLSINEDMSSVIFDVSMQMDLGLLLYDFDP
NKRYKNEIVNHYENLANTFNRKIEIFQTDIKNPIMYLNSLRNPILHFMPFEECITQTC
YLWFLSTKVEKLAFLNDDHPQIFIPVAE"
misc_feature 282484..283914
/locus_tag="hp2018_0292"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3400"
/db_xref="CDD:33207"
misc_feature 282946..283137
/locus_tag="hp2018_0292"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:202105"
gene 283925..284956
/gene="aroB"
/locus_tag="hp2018_0293"
/db_xref="GeneID:12371486"
CDS 283925..284956
/gene="aroB"
/locus_tag="hp2018_0293"
/EC_number="4.2.3.4"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate synthase"
/protein_id="YP_005791111.1"
/db_xref="GI:385231192"
/db_xref="GeneID:12371486"
/translation="MREILIPLKEKSYKVFLGELPEIKLKQKALIISDSIVAGLHLPY
LLERLNALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVG
FASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFHQPKAVYMDLAFL
KTLEKREFQAGVAEIIKMAVCFDKNLVGILETKDLKDCLEEVIFQSVNIKAQIVVQDE
KERNIRAGLNYGHTFGHAIENETNYERFLHGEAIAIGMRMANDLALSLGMLTLKEYER
IENLLKKFDLIFNYQILDLQKFYERLFLDKKSENQTLKFILPKGVGAFEITSHIPKET
ILKVLEKWH"
misc_feature 283958..284941
/gene="aroB"
/locus_tag="hp2018_0293"
/note="Dehydroquinate synthase (DHQS) catalyzes the
conversion of DAHP to DHQ in shikimate pathway for
aromatic compounds synthesis; Region: DHQS; cd08195"
/db_xref="CDD:173954"
misc_feature order(284024..284026,284204..284212,284219..284221,
284228..284230,284279..284284,284288..284290,
284345..284347,284354..284356,284399..284401,
284423..284425,284444..284446,284456..284458,
284615..284617,284627..284629,284666..284668)
/gene="aroB"
/locus_tag="hp2018_0293"
/note="active site"
/db_xref="CDD:173954"
misc_feature order(284126..284128,284147..284152,284231..284233,
284240..284242,284246..284254,284318..284323,
284348..284365)
/gene="aroB"
/locus_tag="hp2018_0293"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173954"
misc_feature order(284444..284446,284615..284617,284666..284668)
/gene="aroB"
/locus_tag="hp2018_0293"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173954"
gene 284947..286518
/locus_tag="hp2018_0294"
/db_xref="GeneID:12371487"
CDS 284947..286518
/locus_tag="hp2018_0294"
/codon_start=1
/transl_table=11
/product="Putative mechanosensitive ion channel"
/protein_id="YP_005791112.1"
/db_xref="GI:385231193"
/db_xref="GeneID:12371487"
/translation="MALRVLLFFCFLFLQAEDKSQELSSIQKQMALVDKKLAKDDNVW
LKKFENYKIYNQIYTEKESVRQELRRLKNKKSKDLLKISTLEHTLKALESQQKMFESY
GVNPFKDLIERPNIPNIPNIANPIAIIDGISFIKSMRLKHENLKNNQTSLGEVLKLLD
QKHQLLNQWHALDKSAKLSDEIYQTQAKRLELQGAQNILKTTIGIFQKDSDEAISIVK
SQVKNQLFKLVYVFLAALLSVVFAWILKIISSKYIENNERVYTVNKAINFVNVSVIVL
IFLFSYLENVTYLVTVLGFASAGLAIAMKDLFMSLLGWFIILIGGSVHVGDRVRIAKG
TDIFIGDVLDISMLHITILEDVTFTTYTNNRRAGRIIFVPNNYIFTTMFANYSHFGMK
TVWDGVDFCVTFDSDFKKASKIALNIATELSKEYTDITYKQLNKMRDRYSLRSLSVKP
RCFLMPESNGIKISVWYQTNSYATMSLRSKIVAEIVEAFLKEENIHIAYTTSKLLKVD
ADALGDGFGNKREQK"
misc_feature 285538..286476
/locus_tag="hp2018_0294"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature 285742..286437
/locus_tag="hp2018_0294"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 286515..287771
/locus_tag="hp2018_0295"
/db_xref="GeneID:12371488"
CDS 286515..287771
/locus_tag="hp2018_0295"
/codon_start=1
/transl_table=11
/product="MiaB-like tRNA modifying enzyme"
/protein_id="YP_005791113.1"
/db_xref="GI:385231194"
/db_xref="GeneID:12371488"
/translation="MKKVYFKTFGCRTNLFDTQVMGENLKDFSATLEEQEADIIVINS
CTVTNGADSAVRSYAKKMARLNKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKIN
ALLQEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRA
RSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQITGLKRIR
IGSLEPNQINDEFLELLGEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEKIA
SKNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDSVS
LEVSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEAQKDGEFKALDQFFNPIKIK
SDKPLRASFLEIKEYEIKERENHAVF"
misc_feature 286521..287762
/locus_tag="hp2018_0295"
/note="radical SAM methylthiotransferase, MiaB/RimO
family; Region: TIGR00089"
/db_xref="CDD:161701"
misc_feature 286521..286796
/locus_tag="hp2018_0295"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature 286926..287546
/locus_tag="hp2018_0295"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(286944..286946,286950..286952,286956..286958,
286962..286970,287070..287072,287076..287081,
287172..287177,287253..287255,287373..287375,
287463..287468)
/locus_tag="hp2018_0295"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 287758..289410
/gene="ftsH1"
/locus_tag="hp2018_0296"
/db_xref="GeneID:12371489"
CDS 287758..289410
/gene="ftsH1"
/locus_tag="hp2018_0296"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="YP_005791114.1"
/db_xref="GI:385231195"
/db_xref="GeneID:12371489"
/translation="MPFSKFLENLTAPFKRIKNRSLVLALGFLILTFCLLLFLILSDV
SRLISSKDFFYVIQSHPKQTLTEDENYFYANKGLYKTNKEAFLRVYKIPESMPIEKRE
SLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESTHKNELENAFQRYDALGVR
FEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLVGPPGVGKTMIAKALASE
ARVPFFYESGSAFSQIYVGAGAKKVHELFIHAKRHAPSIIFIDEIDALGKARGGHRSD
EREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDLLER
QSILEKLLENKKHALDCLKIAKVCVGFSGAMLATLINESALNALKHQRNEITHGDILE
VKDKIAYGKKKPQTLDENQKELVALYQSAKALSAYWLENEFDKAPLLGEFIAFNENKI
HSESEIKNYIKVYLSGTIILELLYKERYSLSKQDLQKAKFLNEFMASELLLAPTKESL
SVLYEEQLEFLKPQIAACKRLSALLLEQECLEHSNLYDLLNG"
misc_feature 287899..289407
/gene="ftsH1"
/locus_tag="hp2018_0296"
/note="ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones]; Region: HflB;
COG0465"
/db_xref="CDD:30813"
misc_feature <288382..288741
/gene="ftsH1"
/locus_tag="hp2018_0296"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 288526..288543
/gene="ftsH1"
/locus_tag="hp2018_0296"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 288712..288714
/gene="ftsH1"
/locus_tag="hp2018_0296"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 289413..289931
/locus_tag="hp2018_0297"
/db_xref="GeneID:12371490"
CDS 289413..289931
/locus_tag="hp2018_0297"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791115.1"
/db_xref="GI:385231196"
/db_xref="GeneID:12371490"
/translation="MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNE
VLQQRRIHSLLLFSPCMLAHKSLAFKRLQLFSFQKDPKNYMDNFYKEVGLNAQLERFK
KEGSLEELEFLLDYKYSDSIIRFLLEKGVKIEVFIGLKDRITDIQALLEFFMPLVQVW
QFKDCNHLLQKS"
misc_feature <289497..289922
/locus_tag="hp2018_0297"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene 289944..290417
/locus_tag="hp2018_0298"
/db_xref="GeneID:12371491"
CDS 289944..290417
/locus_tag="hp2018_0298"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_005791116.1"
/db_xref="GI:385231197"
/db_xref="GeneID:12371491"
/translation="MKKFGLGVYLLLLGILGGSLITLGMMVAPIVFKAPSILPEFNLT
LFESGKLMSQIIVRFNFFLGAIGFVVLLYEIISFIYDKRSLVYLILGVAIGALCLLFV
FYYTPYILNAQKVGEVALQSTEFARSHAQSEWLFKELLVLVCALFFLRLFGKNAL"
misc_feature 290019..290294
/locus_tag="hp2018_0298"
/note="Domain of unknown function (DUF4149); Region:
DUF4149; pfam13664"
/db_xref="CDD:205841"
gene 290485..299217
/locus_tag="hp2018_0299"
/db_xref="GeneID:12371492"
CDS 290485..299217
/locus_tag="hp2018_0299"
/codon_start=1
/transl_table=11
/product="toxin-like outer membrane protein"
/protein_id="YP_005791117.1"
/db_xref="GI:385231198"
/db_xref="GeneID:12371492"
/translation="MKQFKKKPKKIKRSHQNQKTILKRPLWLMPLLIGGFASGVYADG
TDILGLSWGEKSQKVCVHHPWYALWSCDKWEEKTQQFTGNQLITKTWAGGNAANYYHS
QNNQSITANLKNDNGTYFLSGLYNYTGGENNGGNLDIELGSNATFNLGANSGNSFTSW
YPNGHTNVTFSAGTINVNNSVEVGNRVGSGAGTHTGTATLNLNANKVNVNSNINAYKT
SQVNIGNANSAITINSVSLSGDTCSSLASVGIGANCSTSGPSYSFKGTTNATNTTFSN
ASGSFTFEESANFSGAKWNGGAFTFNKGFSATNNTAFNSGSFTFKDTSSFNNATFNNA
TYTFNNQATFQNSSFNGGTFTFNNQTNPTNSTQHPQILFENSSFSGSATTLKGSVIFQ
QAFNNSNQQLTIQNASFDNATFNNTGKITIEKDASFNNTTFNTSVDTNNMTISGGVTL
SGKNDLKNGSTLDFGSAKVNLAQGTTFNLTSLGSEKSVTILNSSGGITYNHLLNHVLN
SLTNALKTTESPSKPQSFAQGLWDMITYNGVTGQLLNESAATSKNTDSSPPKSSTNST
QVYQVGYKIGDTIYKLQETFGPNSIIIQALESGTYTPPPVINGSKFDLSVSNYINADM
PWYDHKYYIPKSQNFTESGTYYLPSVQIWGSYTNSFKQTFSANGSNLVIGYNATWTGN
SVSSSGTVSFGDTSGSALNGHCGPWPYYQCTGTTNGAYSAYHVYITANLRSGNRIGTG
GAANLIFNGVDSINIANATITQHNAGIYSSSMTFSTQNMDNSQNLNGLNANGKLSVYG
ATFTNQAKDGKFIFNAGQTTFENTNFNGGSYQFSGDSLNFSNNNQFNSGSFEIGAKNA
SFNNANFNNSASFNFNNSSATTSFMGDFTNANSNLQIAGNAVFGNSTNGSQNTANFNN
NGSVNIAGNATFDNVAFNGPTNTIVKGQVTLNNITLKNLNAPLSFGDGTISFSAHSVI
NIGEAITNGNPITLVSSSKEIEYNNAFSKNLWQLINYQGHGASSEKLVSSAGNGVYDV
VYSFNNQTYNFQEIFSPNSISIRRLGVGMVFDYMDMEKSDRLYYQNALGFMTYMPNSY
NNNLGNSNNTIYYYDNSIDFYASGKTLFTKAEFSQTFTGQNSAIVFGAKNIWTSVSDA
PQSNVIIRFGDNKGAGSNDASGHCWNLQCIGFIIGHYEAQKIYITGSIESGNRISSGG
GASLNFNGLQGILLTNATLYNRAAGTQSSSMNFVSNSANIQAQNSYFIDDTAQNKGNP
NFSFNALNLDFSNSSFRGYVGTTQSVFQFNAVNAISFTNSSNLSSGLYQMQAQSVLFD
NSNLSVSVGTSSIKANAINLSQNASINASNHSTLELSGDLNLNDTSSLNLNQSTINVS
NNATINDYASLIASNGSHLNFNGAVNFNSANITTSLSSSSIVFKGAVSLGGQFNLSNN
SSLDFQGSSAITSNTAFNFYDNAFSQSPITFHQALDIKAPLSLGGNLLNPNNSSVLNL
KNSQLVFSDQGSLNIANIDLLSDLNGNKNRVYNIIQADMNGNWYERINFFGMRINDGI
YDAKNQTYSFTNPLNNALKITESFKDNQLSVTLSQIPGIKNTLYNIGSEIFNYQKVYN
NANGVYSYSDDAEGVFYLTSSVKGYYNPNQSYQASGSNNTTKNNNLSSESSVISQTYN
AQGDPISALHVYNKGYNFNNIKALGQMVLKLYPEIKKILGNDFSLSSLSNLKGDVLNQ
LTKLITPSDWKNINELIDNANNSVVQNFNNGALIIGATKIGQTNTNSAVVFGGLGYQK
PCDYTDIVCQKFRGTYLGQLLESSSADLGYIDTTFNAKEIYLTGTLGSGNAWGTGGSA
SVTFNSQTSLILNQANIVSSQTDGIFSMLGQEGINKVFNQAGLANILGEVAMQSINKA
GGLGNLIADTLGSNSVIGGYLTPEQKNQTLSQLLGQNNFDNLMNDSGLNTAIKDLIRQ
KLGFWTGLVGGLAGLGGIDLQNPEKLIGSMSINDLLSKRGLFNQITSFISANDIGQVI
SVMLQDIVKPSEALQNDVVALGKQMIGEFLGQDTLNSLESLLQNQQIKSVLDKVLAAK
GLGPIYEQGLGDLIPNLGNKGLFAPYGLSQVWQKGDFNFNAQGNVFVQNSTFSNANGG
TLSFNAGNSLIFAGNNHIAFTNHFGTLNLLSNQVSNINITTLDASNGLKINATNNNVS
VSQGNLFINASCAQQSDPTTASATNPCALSAQSANGASSSNASNNVPIALNNNDESLV
VTANDFNFSGNIYANGVVDFSKIKGSANVKNLYLYNNAQFQANNLTISNQAVLEKNAS
FVTNNLNIQGAFNNNATQKIEVLQNLVIASNASLSTGIYGLEVGGALNNFGAIHFNLE
NIQTPAPLIQAEGIINLNTAQTPFINVNNSMANNTTYTLLKSSRYIDYNINPDSLQSY
LKLYTLININGNHIEEKNGVLTYLGQRVLLQDKGLLLSVALPNSNNASPNNILSLSVL
YNQVKMSYGDKAMDFTPPTLQDYIVGIQGQSALNQIEAIGGNSAIKWLSTLMMETKEN
PLFAPIYLENHSLNEILDATKDIQNTASLISNPNFRDNATNLLELASYTQQTSRLTKL
SDFRAREGESNFSERLLELKNKRFSDPNPSEVFVKYSQPNKHQNNLWIQGVGGASFIS
GGNGTLYGLNVGYDRLVKNVILGGYVAYGYSDFNGNIMRSLGNNVDVGMYARAFLKRN
EFTLSANETYGGNATSINSSNSLLSVLNQRYNYNTWTTSVNGNYGYDFMFKQKSVVLK
PQVGLSYHFIGLSGMKGKMQNPAYQQFVMHSNPSNESVLTLNMGLESRKYFGKNSYYF
VTARLGRDLLIKSKGDNVVRFVGENTLLYRKGEIFNTFASVITGGEMHLWRLMYVNAG
VGLKMGLQYQDLNITGNVGMRVAF"
misc_feature 292615..292794
/locus_tag="hp2018_0299"
/note="Putative vacuolating cytotoxin; Region: VacA2;
pfam03077"
/db_xref="CDD:111918"
misc_feature 294004..294183
/locus_tag="hp2018_0299"
/note="Putative vacuolating cytotoxin; Region: VacA2;
pfam03077"
/db_xref="CDD:111918"
misc_feature <295480..>296253
/locus_tag="hp2018_0299"
/note="PPE-repeat proteins [Cell motility and secretion];
Region: COG5651"
/db_xref="CDD:35210"
misc_feature 295912..296091
/locus_tag="hp2018_0299"
/note="Putative vacuolating cytotoxin; Region: VacA2;
pfam03077"
/db_xref="CDD:111918"
misc_feature 298390..>299010
/locus_tag="hp2018_0299"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 299265..300482
/locus_tag="hp2018_0300"
/db_xref="GeneID:12371493"
CDS 299265..300482
/locus_tag="hp2018_0300"
/EC_number="4.1.1.20"
/codon_start=1
/transl_table=11
/product="diaminopimelate decarboxylase"
/protein_id="YP_005791118.1"
/db_xref="GI:385231199"
/db_xref="GeneID:12371493"
/translation="MFNYEELFQTYKTPFYLYDFDKIKQAFLNYKEAFRGRKSLICYA
LKANSNLSILSLLANLGSGADCVSIGEIQRALKAGIKPYKIVFSGVGKSAFEIEQALK
LNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVG
EKEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLR
FFDAGGGIGVSYENEETIKLYDYAQGILNSLQGLDLTIICEPGRSIVAESGELITQVL
YEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPCRGREISPCDVVGPVCESSDT
FLKDANLPELEPGDKLAIEKVGAYGSSMASQYNSRPKLLELALEDHKIRVIRKREALE
DLWRLEIEGLKRV"
misc_feature 299265..300461
/locus_tag="hp2018_0300"
/note="diaminopimelate decarboxylase; Region: lysA;
TIGR01048"
/db_xref="CDD:188105"
misc_feature 299295..300395
/locus_tag="hp2018_0300"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Diaminopimelate Decarboxylase; Region:
PLPDE_III_DapDC; cd06828"
/db_xref="CDD:143501"
misc_feature order(299394..299396,299400..299402,299457..299459,
299526..299528,299667..299669,299811..299813,
299817..299819,299826..299828,299934..299939,
300039..300050,300156..300158,300168..300170,
300249..300251,300336..300338,300348..300350,
300360..300362)
/locus_tag="hp2018_0300"
/note="active site"
/db_xref="CDD:143501"
misc_feature order(299394..299396,299400..299402,299457..299459,
299526..299528,299667..299669,299811..299813,
299817..299819,299826..299828,299934..299939,
300039..300050,300249..300251,300336..300338)
/locus_tag="hp2018_0300"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143501"
misc_feature order(299400..299402,299817..299819,299826..299828,
300048..300050,300156..300158,300168..300170,
300249..300254,300336..300338,300348..300350,
300360..300362)
/locus_tag="hp2018_0300"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143501"
misc_feature order(299400..299402,300249..300251)
/locus_tag="hp2018_0300"
/note="catalytic residues [active]"
/db_xref="CDD:143501"
misc_feature order(299415..299420,299463..299468,299472..299477,
299532..299540,299550..299552,299595..299597,
299604..299606,299727..299738,300093..300095,
300099..300101,300120..300122,300126..300128,
300240..300257,300261..300263,300345..300353,
300357..300368,300375..300377)
/locus_tag="hp2018_0300"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143501"
gene 300487..300777
/locus_tag="hp2018_0301"
/db_xref="GeneID:12371494"
CDS 300487..300777
/locus_tag="hp2018_0301"
/EC_number="5.4.99.5"
/codon_start=1
/transl_table=11
/product="Chorismate mutase I"
/protein_id="YP_005791119.1"
/db_xref="GI:385231200"
/db_xref="GeneID:12371494"
/translation="MQKNLDSLLENLRAEIDALDNELSDLLDKRLGIALKIALIKQEN
PIYCPKREQEILKRLSQRDFKHLNGGILASFYAEVFKISRNFQENALKELKK"
misc_feature 300523..300750
/locus_tag="hp2018_0301"
/note="Chorismate mutase type II; Region: CM_2;
smart00830"
/db_xref="CDD:197899"
gene 300790..301662
/locus_tag="hp2018_0302"
/db_xref="GeneID:12371495"
CDS 300790..301662
/locus_tag="hp2018_0302"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791120.1"
/db_xref="GI:385231201"
/db_xref="GeneID:12371495"
/translation="MFEKITLAHKDLFSRFLSTQKIVLSDVSFTNCFLWQHARLIQVA
VIRDCLVIQTTYENQKPFYFYPIGKRPHECVKELLELEKNLRFHSLTLEQKDDLKDNF
VGVFDFTYNRDRSDYVYSIEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNRK
EVLEASKAWFLESQTDDLGLINENKGIQSVLENYESLDLKGGLIRVNGEIVSFSFGEV
LNEESALIHIEKARTDIAGAYQIINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYN
PVFLIDKYEAIARH"
misc_feature 300790..301656
/locus_tag="hp2018_0302"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG4866"
/db_xref="CDD:34475"
gene 301663..303366
/locus_tag="hp2018_0303"
/db_xref="GeneID:12371496"
CDS 301663..303366
/locus_tag="hp2018_0303"
/EC_number="2.6.1.85"
/EC_number="4.1.3.38"
/codon_start=1
/transl_table=11
/product="Para-aminobenzoate synthase- aminase
component/Aminodeoxychorismate lyase"
/protein_id="YP_005791121.1"
/db_xref="GI:385231202"
/db_xref="GeneID:12371496"
/translation="MIFGDFKYQKSVKKLTATNLNELKNALDFISQNRGKGYFVGYLL
YEARLAFLDENFQSQTPFLYFEQFLERKKYSLEPLKEHAFYPKIHSPLDQKTYFKQFK
AVKEHLKNGDTYQVNLTMELLLNTKAKLKRVFKEVVHNQNTPFKALIENEFGSVLSFS
PELFFELEFLDTAIKIITKPMKGTIARSNNPLIDEKNRLFLQNDDKNRSENVMIVDLL
RNDLSRLALKNSVKVNQLFEIISLPSVYQMISEVEAQLPLKTSLFEIFKALFPCGSVT
GCPKIKTMQIIEELEKRPRGVYCGAIGMIGEKKALFSVPIRTLEKRAREDFLHLGVGS
GVTYKSKALKEYEESFLKSFFVMPKIEFEIIETMKVVKRDQKLEIKNKNAHKERLMHS
AQYFNFKYDDNLLDFELEKEGVLRVLLNKKGKLIKEYKPLEPLKSLEIRLSEAPIDKH
NDFLYHKTTYAPFYQKARALIKKGVMFDEIFYNQDLELTEGARSNLILEIHNKLLTPY
FSAGALNGTGVVGLLKKGLVEHAPLKLQDLQRAAKIYCINALYGLVEVGIIGYPMEQK
S"
misc_feature 301705..302730
/locus_tag="hp2018_0303"
/note="aminodeoxychorismate synthase; Provisional; Region:
PRK07508"
/db_xref="CDD:181007"
misc_feature 301939..302718
/locus_tag="hp2018_0303"
/note="chorismate binding enzyme; Region: Chorismate_bind;
pfam00425"
/db_xref="CDD:201219"
misc_feature 302740..303330
/locus_tag="hp2018_0303"
/note="PyridoxaL 5'-Phosphate Dependent Enzymes class IV
(PLPDE_IV). This D-amino acid superfamily, one of five
classes of PLPDE, consists of branched-chain amino acid
aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate...; Region:
PLPDE_IV; cl00224"
/db_xref="CDD:206913"
misc_feature order(302755..302757,302824..302826,303031..303033,
303130..303132,303211..303216,303307..303309)
/locus_tag="hp2018_0303"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:29567"
misc_feature order(302755..302757,302908..302910,302914..302916,
303037..303039,303046..303048,303055..303057,
303067..303069,303109..303111)
/locus_tag="hp2018_0303"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29567"
misc_feature order(302824..302826,303031..303033,303130..303132)
/locus_tag="hp2018_0303"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:29567"
misc_feature 303031..303033
/locus_tag="hp2018_0303"
/note="catalytic residue [active]"
/db_xref="CDD:29567"
gene 303530..304513
/gene="amiE"
/locus_tag="hp2018_0304"
/db_xref="GeneID:12371497"
CDS 303530..304513
/gene="amiE"
/locus_tag="hp2018_0304"
/EC_number="3.5.1.4"
/codon_start=1
/transl_table=11
/product="aliphatic amidase"
/protein_id="YP_005791122.1"
/db_xref="GI:385231203"
/db_xref="GeneID:12371497"
/translation="MGVAVVNYKMPRLHTKEQVLENCRNIAKVIGGVKQGLPGLDLII
FPEYSTHGIMYDRQEMFDTAASVPGEETAILAEACKKNKVWGVFSLTGEKHEQAKKNP
YNTLILVNDKGEIVQKYRKILPWCPIECWYPGDKTYVVDGPKGLKVSLIICDDGNYPE
IWRDCAMRGAELIVRCQGYMYPAKEQQIAIVKAMAWANQCYVAVANATGFDGVYSYFG
HSSIIGFDGHTLGECGEEENGLQYAQLSVQQIRDARKYDQSQNQLFKLLHRGYSGVFA
SGDGDKGVAECPFEFYKTWVNDPKKAQENVEKITRPSVGVAACPVGDLPTK"
misc_feature 303533..304510
/gene="amiE"
/locus_tag="hp2018_0304"
/note="acylamide amidohydrolase; Provisional; Region:
amiE; PRK13286"
/db_xref="CDD:183949"
misc_feature 303533..304420
/gene="amiE"
/locus_tag="hp2018_0304"
/note="aliphatic amidases (class 2 nitrilases); Region:
aliphatic_amidase; cd07565"
/db_xref="CDD:143589"
misc_feature order(303635..303643,303830..303832,303893..303931,
303989..303991,303998..304012,304016..304021,
304025..304030,304073..304078,304085..304087,
304094..304099,304103..304108,304115..304120,
304175..304177,304205..304207,304220..304222,
304229..304231,304235..304255,304274..304276,
304289..304297,304301..304306,304310..304348,
304382..304384,304388..304417)
/gene="amiE"
/locus_tag="hp2018_0304"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:143589"
misc_feature order(303668..303670,303890..303892,303902..303904,
303914..303916,303986..303991,304064..304066)
/gene="amiE"
/locus_tag="hp2018_0304"
/note="active site"
/db_xref="CDD:143589"
misc_feature order(303668..303670,303890..303892,303986..303988)
/gene="amiE"
/locus_tag="hp2018_0304"
/note="catalytic triad [active]"
/db_xref="CDD:143589"
misc_feature order(303830..303832,303893..303931,303989..303991,
303998..304012,304016..304021,304025..304030,
304076..304078,304085..304087,304094..304099,
304103..304108,304115..304120,304205..304207,
304289..304297,304301..304306,304310..304348,
304382..304384,304388..304417)
/gene="amiE"
/locus_tag="hp2018_0304"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143589"
gene 304656..304778
/locus_tag="hp2018_0305"
/db_xref="GeneID:12371498"
CDS 304656..304778
/locus_tag="hp2018_0305"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791123.1"
/db_xref="GI:385231204"
/db_xref="GeneID:12371498"
/translation="MGLGDLVGSCRGGVQNTPYPLKKMSLKQNNQDPIIRLVYA"
gene complement(304838..307354)
/gene="flgL"
/locus_tag="hp2018_0306"
/db_xref="GeneID:12371499"
CDS complement(304838..307354)
/gene="flgL"
/locus_tag="hp2018_0306"
/codon_start=1
/transl_table=11
/product="Flagellar hook-associated protein"
/protein_id="YP_005791124.1"
/db_xref="GI:385231205"
/db_xref="GeneID:12371499"
/translation="MLKKTNKDLIMRVTFGSKYNQMNHYQNALQNKINDANTQIASGL
KIRYGYQNSDINNQNLKFQYEENTLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKT
KLIQSANDVHSETSRAAIANDLERLKEHMMNVANTSIGGEFLFGGSKVDRPPIDSNGK
YHGNGEDLNALISSDNLVPYNISGQDLFLGADKDKHKLITTNIKLLNQNKLHPDVMDA
LEHSSLPEEVFIKPSDTLRELIGDNDKDPTNDPKEFFYLQGIRPDGSSFKEKFALDKA
YQNQESATKVSDLLDKIGHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDFHLIS
SDGDFDNLDALRSSAKRVTEYVKSAFVTDRSLSQVKAVPNMYNPKVLEIPSVFVTKDN
VLANKNTKLSEIFGDKVEILKINASRLGDESAIKIPNLPINLDIPILLDVKNSTIKDL
KDAIKERFNNEVDVEIETNGRLRIIDNSSKESPISFALSTLDQKGLEVAGIPTNNASE
YQKTYFNKEGAKLESNVAQTAQNGAANGSTKLSEVSKGSLENSVFNMKLNDVNGSFLE
AQINLDPNGAFLSLPNGVKIPLYDPTTAGIQASKPNEVTYRQLMDAMSIALNYSNTDP
AIYQQISDNPTSKESKEQFIGLLKQAKDNLSVNLNEEGKVIIQDNMHSNTKMQFMLFD
KDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENIITSVRKGIYRPDALGD
TYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQIQSIRG
ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL"
misc_feature complement(304841..307324)
/gene="flgL"
/locus_tag="hp2018_0306"
/note="flagellar hook-associated protein FlgL; Validated;
Region: flgL; PRK08412"
/db_xref="CDD:181415"
misc_feature complement(306908..307300)
/gene="flgL"
/locus_tag="hp2018_0306"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
gene 307569..307883
/locus_tag="hp2018_0307"
/db_xref="GeneID:12371500"
CDS 307569..307883
/locus_tag="hp2018_0307"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L21"
/protein_id="YP_005791125.1"
/db_xref="GI:385231206"
/db_xref="GeneID:12371500"
/translation="MSYAIFKHGGKQYKVVEGDIVLLDKMNKEPKALVELVEVLAVSK
EGKLSFGKPFVNGAKIEAEVINEGRGKKVITFKKRRRKDSKTKRGFRRDFTRVRITKI
VA"
misc_feature 307575..307880
/locus_tag="hp2018_0307"
/note="50S ribosomal protein L21; Validated; Region: rplU;
PRK05573"
/db_xref="CDD:235510"
gene 307897..308163
/locus_tag="hp2018_0308"
/db_xref="GeneID:12371501"
CDS 307897..308163
/locus_tag="hp2018_0308"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L27"
/protein_id="YP_005791126.1"
/db_xref="GI:385231207"
/db_xref="GeneID:12371501"
/translation="MAHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTK
IHPGNNVGMGKDHTLYALIDGVVKFEHKDRSRKKVSVISGNFGE"
misc_feature 307897..308142
/locus_tag="hp2018_0308"
/note="50S ribosomal protein L27; Validated; Region: rpmA;
PRK05435"
/db_xref="CDD:235464"
gene 308282..309934
/locus_tag="hp2018_0309"
/db_xref="GeneID:12371502"
CDS 308282..309934
/locus_tag="hp2018_0309"
/codon_start=1
/transl_table=11
/product="Dipeptide-binding ABC transporter"
/protein_id="YP_005791127.1"
/db_xref="GI:385231208"
/db_xref="GeneID:12371502"
/translation="MNSVFIKGLSLSVLLLFGSFLKASENPNATLNPSKENVSIEEQK
RFGGVLVFARGADGSSMDPALVTDGESYVATGNIYDTLVQFKYGTTEVEPALATSWEI
SPDGLVYTFHLRKGVYFHQTKYWNKKVEFSAKDVLFSFERQMDKAKRYYSPGAKSYKY
WEGMGMSHIIKSIEALDDYTIRFTLNGPEAPFLANLGMDFLSILSKDYADYLAQNNKK
DELAKKPIGTGPFKFFLWNKDEKIILVKNQDYWGPKAYLDKVVVRTIPNSSTRALALR
TGEIMLMTGPNLNEVEQLEKLPNIVVDRSPGLIANWLSLNTQKKYFNNPLVRLAINHA
INVDDYIKVIYEGFAQKMVNPFPPTIWGYNYNIKPYEYDLKKAKELLKQAGYPNGFKT
TIFTTSTRNPKGAVFIQASLAKIGIDVKIEVYEWGAYLKRTGLGEHEMAFAGWMADIA
DPDNFLYTLWSKQAASAIPTQNGSFYKSDAFSDLLIKAKRVSDQKEREALYLKAQEII
HKDAPYVPLAYPYSVVPHLSKVKGYKTTGVSVNRFFKVYLEK"
misc_feature 308426..309880
/locus_tag="hp2018_0309"
/note="The substrate-binding component of an ABC-type
dipeptide import system contains the type 2 periplasmic
binding fold; Region: PBP2_DppA_like; cd08493"
/db_xref="CDD:173858"
misc_feature 308552..309679
/locus_tag="hp2018_0309"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
misc_feature order(309557..309559,309569..309571,309608..309619,
309623..309625)
/locus_tag="hp2018_0309"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:173858"
gene 309945..310949
/gene="dppB"
/locus_tag="hp2018_0310"
/db_xref="GeneID:12371503"
CDS 309945..310949
/gene="dppB"
/locus_tag="hp2018_0310"
/codon_start=1
/transl_table=11
/product="Dipeptide transport system permease protein"
/protein_id="YP_005791128.1"
/db_xref="GI:385231209"
/db_xref="GeneID:12371503"
/translation="MLSFIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKAN
QAAIDALREQFGLNKPLIEQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELA
LIALFMALVLGISVGVLAAIKRYSMFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLG
WLPVFGRLSDVYYLDGPTGLYLIDSLIAGDYGAFVDTIKHLILPSIVLATVSTAVIAR
MTRASMAEVSKEDYVRTAKAKGCSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMI
TETVFSWPGIGKWIVNALNQRDFPIIQSMSLIIAMMYIGANLLVDVLYAFIDPRIRLS
"
misc_feature 309945..310940
/gene="dppB"
/locus_tag="hp2018_0310"
/note="dipeptide transporter permease DppB; Provisional;
Region: PRK10914"
/db_xref="CDD:182834"
misc_feature 310227..310877
/gene="dppB"
/locus_tag="hp2018_0310"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(310275..310280,310287..310292,310305..310307,
310338..310349,310353..310382,310389..310394,
310398..310400,310575..310580,310584..310586,
310590..310592,310599..310604,310608..310610,
310620..310625,310632..310634,310683..310685,
310725..310730,310737..310739,310758..310769,
310776..310781,310806..310811,310839..310844,
310851..310856,310860..310865,310872..310877)
/gene="dppB"
/locus_tag="hp2018_0310"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(310356..310400,310758..310775)
/gene="dppB"
/locus_tag="hp2018_0310"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(310398..310400,310560..310562,310776..310778,
310800..310802,310809..310811,310839..310841)
/gene="dppB"
/locus_tag="hp2018_0310"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(310635..310673,310689..310694,310704..310706)
/gene="dppB"
/locus_tag="hp2018_0310"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 310949..311806
/gene="dppC"
/locus_tag="hp2018_0311"
/db_xref="GeneID:12371504"
CDS 310949..311806
/gene="dppC"
/locus_tag="hp2018_0311"
/codon_start=1
/transl_table=11
/product="Dipeptide transport system permease protein"
/protein_id="YP_005791129.1"
/db_xref="GI:385231210"
/db_xref="GeneID:12371504"
/translation="MESFREFIQQFKKNKAAVVGAWIVLLLVVCAVFAPLLAPYDPYA
QNAQDRLLKPIWEHGGNAKYLLGTDDLGRDILSRLIYGARISLTIGIVSMGIAVFFGT
ILGLIAGYFGGKTDAVIMRIMDIMFALPSILLIVIVVAVLGPSLTNAMLAIGFVGIPG
FARLVRSSVLGEKEKEYVIASKINGSSHLRLMCKVIFPNCIIPLIVQVTMGFASTVLE
AAALSFLGLGAQPPKPEWGAMLMNSMQYIATAPWMLVFPGVMIFLTVMSFNLVGDGIM
DALDPKRAS"
misc_feature 310949..311794
/gene="dppC"
/locus_tag="hp2018_0311"
/note="dipeptide transporter; Provisional; Region:
PRK10913"
/db_xref="CDD:182833"
misc_feature 310958..311110
/gene="dppC"
/locus_tag="hp2018_0311"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature 311195..311743
/gene="dppC"
/locus_tag="hp2018_0311"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(311243..311248,311255..311260,311273..311275,
311303..311314,311318..311347,311354..311359,
311363..311365,311414..311419,311423..311425,
311429..311431,311438..311443,311447..311449,
311459..311464,311471..311473,311522..311524,
311564..311569,311576..311578,311597..311608,
311615..311620,311660..311665,311693..311698,
311705..311710,311714..311719,311726..311731,
311738..311743)
/gene="dppC"
/locus_tag="hp2018_0311"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(311321..311365,311597..311614)
/gene="dppC"
/locus_tag="hp2018_0311"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(311363..311365,311399..311401,311615..311617,
311654..311656,311663..311665,311693..311695)
/gene="dppC"
/locus_tag="hp2018_0311"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(311474..311512,311528..311533,311543..311545)
/gene="dppC"
/locus_tag="hp2018_0311"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 311818..312681
/gene="dppD"
/locus_tag="hp2018_0312"
/db_xref="GeneID:12371505"
CDS 311818..312681
/gene="dppD"
/locus_tag="hp2018_0312"
/codon_start=1
/transl_table=11
/product="Dipeptide transport ATP-binding protein"
/protein_id="YP_005791130.1"
/db_xref="GI:385231211"
/db_xref="GeneID:12371505"
/translation="MILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSG
KSITSLSILGLIEKPGKIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSL
NPSYTVGFQINEVLKIHHPSLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQR
QRVMIAMAMVCEPEILIADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVV
AQIADEVVVMYKGHVVEQASAKELFADPRHPYTKALLNAIPKPGKEYRKKRLETVDEN
VDYLSFQKELR"
misc_feature 311821..312528
/gene="dppD"
/locus_tag="hp2018_0312"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 311878..312588
/gene="dppD"
/locus_tag="hp2018_0312"
/note="nickel import ATP-binding protein NikD; Region:
nickel_nikD; TIGR02770"
/db_xref="CDD:131817"
misc_feature 311932..311955
/gene="dppD"
/locus_tag="hp2018_0312"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(311941..311946,311950..311958,312103..312105,
312352..312357,312454..312456)
/gene="dppD"
/locus_tag="hp2018_0312"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 312094..312105
/gene="dppD"
/locus_tag="hp2018_0312"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 312280..312309
/gene="dppD"
/locus_tag="hp2018_0312"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 312340..312357
/gene="dppD"
/locus_tag="hp2018_0312"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 312364..312375
/gene="dppD"
/locus_tag="hp2018_0312"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 312442..312462
/gene="dppD"
/locus_tag="hp2018_0312"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 312517..>312630
/gene="dppD"
/locus_tag="hp2018_0312"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:219806"
gene 312678..313484
/gene="dppF"
/locus_tag="hp2018_0313"
/db_xref="GeneID:12371506"
CDS 312678..313484
/gene="dppF"
/locus_tag="hp2018_0313"
/codon_start=1
/transl_table=11
/product="Dipeptide transport ATP-binding protein"
/protein_id="YP_005791131.1"
/db_xref="GI:385231212"
/db_xref="GeneID:12371506"
/translation="MKLLEIKELKKTYAIDRGLFKPKRVIHALNGISFEVEQNEVLSI
VGESGCGKSTTAKILAGIERQDSGAIYFNGKRHLHFSKQDWFDYRKKVQMIFQDPYSS
LNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQR
IGIARALILHPSVVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEH
ISDKIIVMNQGQIVETGDVDSVISAPKHPYTQKLLNAVPHLEKSMQRFAE"
misc_feature 312678..313463
/gene="dppF"
/locus_tag="hp2018_0313"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:31321"
misc_feature 312684..313382
/gene="dppF"
/locus_tag="hp2018_0313"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 312813..312836
/gene="dppF"
/locus_tag="hp2018_0313"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(312822..312827,312831..312839,312966..312968,
313206..313211,313308..313310)
/gene="dppF"
/locus_tag="hp2018_0313"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 312957..312968
/gene="dppF"
/locus_tag="hp2018_0313"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 313134..313163
/gene="dppF"
/locus_tag="hp2018_0313"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 313194..313211
/gene="dppF"
/locus_tag="hp2018_0313"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 313218..313229
/gene="dppF"
/locus_tag="hp2018_0313"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 313296..313316
/gene="dppF"
/locus_tag="hp2018_0313"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 313371..>313463
/gene="dppF"
/locus_tag="hp2018_0313"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
gene 313504..314586
/gene="obgE"
/locus_tag="hp2018_0314"
/db_xref="GeneID:12371507"
CDS 313504..314586
/gene="obgE"
/locus_tag="hp2018_0314"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_005791132.1"
/db_xref="GI:385231213"
/db_xref="GeneID:12371507"
/translation="MFVDSVEIIIASGKGGPGMVSFRREKFVIKGGPDGGDGGDGGDV
YFEVDNNTDTLASFRGTKHHKAKNGAPGGTRNCAGKKGEDRIIVVPPGTQVFVGDELW
LDLVEPKERVLALKGGKGGLGNAHFKRATKQQPTYAQKGLEGVEKCVRLELKLIADIG
LVGFPNAGKSTLISTISNAKPKIANYEFTTLVPNLGVVSVDEKSEFLMADIPGIIEGA
SEGKGLGISFLKHIERTKVLAFVLDASRLDLGIKEQYQRLRLELEKFSPALANKPFGV
LLNKCDVVENIDEMTKDFCAFLNLEAQKLNAFDLEPYLGFLHPNLTSDFENSPNEQSA
LFVLPLSAVSALNTHALKFVLLKALQ"
misc_feature 313504..314415
/gene="obgE"
/locus_tag="hp2018_0314"
/note="GTPase CgtA; Reviewed; Region: obgE; PRK12299"
/db_xref="CDD:183417"
misc_feature 313507..313968
/gene="obgE"
/locus_tag="hp2018_0314"
/note="GTP1/OBG; Region: GTP1_OBG; pfam01018"
/db_xref="CDD:110047"
misc_feature 313972..314580
/gene="obgE"
/locus_tag="hp2018_0314"
/note="Obg GTPase; Region: Obg; cd01898"
/db_xref="CDD:206685"
misc_feature 313990..314013
/gene="obgE"
/locus_tag="hp2018_0314"
/note="G1 box; other site"
/db_xref="CDD:206685"
misc_feature order(313999..314016,314338..314343,314347..314349,
314524..314529)
/gene="obgE"
/locus_tag="hp2018_0314"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206685"
misc_feature 314035..314082
/gene="obgE"
/locus_tag="hp2018_0314"
/note="Switch I region; other site"
/db_xref="CDD:206685"
misc_feature 314071..314073
/gene="obgE"
/locus_tag="hp2018_0314"
/note="G2 box; other site"
/db_xref="CDD:206685"
misc_feature 314131..314142
/gene="obgE"
/locus_tag="hp2018_0314"
/note="G3 box; other site"
/db_xref="CDD:206685"
misc_feature order(314140..314163,314170..314208)
/gene="obgE"
/locus_tag="hp2018_0314"
/note="Switch II region; other site"
/db_xref="CDD:206685"
misc_feature 314338..314349
/gene="obgE"
/locus_tag="hp2018_0314"
/note="G4 box; other site"
/db_xref="CDD:206685"
misc_feature 314524..314532
/gene="obgE"
/locus_tag="hp2018_0314"
/note="G5 box; other site"
/db_xref="CDD:206685"
gene 314769..315764
/locus_tag="hp2018_0315"
/db_xref="GeneID:12371508"
CDS 314769..315764
/locus_tag="hp2018_0315"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791133.1"
/db_xref="GI:385231214"
/db_xref="GeneID:12371508"
/translation="MKRFVLFLLFICVCVCVQAYAEQDYFFRDFKSIDLPKKLHLDKK
LPQTIQPCAQLNASKHYTATGVREPDACTKSFKKSAMVSYDLALGYLVSQNKPYGLKA
IEILNAWANELQSVDTYQSEDNINFYMPYMNMAYWFVKKEFPSPEYEDFIRRMRQYSQ
SALNTNHGAWGILFDVSSALALDDHALLQNSANRWQDWIFKAIDENGVIPSAITRSDT
SDYHGGPTKGIKGIAYTNFALLAITISGELLFENGYDLWGSGAGQRLSVAYNKAATWI
LNPETFPYFQPNLIGVHNNAYFIILAKHYSSPSADELLEQGDLHEDGFRLKLRSP"
misc_feature 314925..315614
/locus_tag="hp2018_0315"
/note="Alginate lyase; Region: Alginate_lyase; pfam05426"
/db_xref="CDD:203248"
gene 316030..316584
/locus_tag="hp2018_0316"
/db_xref="GeneID:12371509"
CDS 316030..316584
/locus_tag="hp2018_0316"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791134.1"
/db_xref="GI:385231215"
/db_xref="GeneID:12371509"
/translation="MKKMVWVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSF
ESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDDTKNKNVKEAFFALFKNTNIKVTF
RNVIEGDHAGSLTAYVRMNEKLVKVPMQYTIADDKLVVKGVLDLLNFGLKNELASLAK
RCESFHEGLTWSQVEIQFESMIKG"
gene 316594..317886
/locus_tag="hp2018_0317"
/db_xref="GeneID:12371510"
CDS 316594..317886
/locus_tag="hp2018_0317"
/EC_number="5.4.3.8"
/codon_start=1
/transl_table=11
/product="glutamate-1-semialdehyde aminotransferase"
/protein_id="YP_005791135.1"
/db_xref="GI:385231216"
/db_xref="GeneID:12371510"
/translation="MELLHSINDFNEAKQVIAGGVNSPVRAFKSVKGTPPFILKGKGA
YLYDVDNNHYIDFVQSWGPLIFGHANEEIEENIINVLKKGTSFGAPTELETTLAKEII
SCYEGLDKVRLVNSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHSDSLLVKAGSGCA
TFGSPSSLGVPNDFSKHTLVARYNDLNSTEECFKKGDVGCVIIEPIAGNMGLVPAQKE
FLLGLKALCEKYQAVLILDEVMSGFRASLSGSQEFYGVVPDLVTFGKVIGAGLPLACF
GGRAEIMDLLSPIGGVYQAGTLSGNPLAVCAGLSALYKIKRDKTLYTRLNALAIRLTQ
GLKKSAQSYNIALETLNMGSMFGFFFNENAVRDFDDALKSDTEMFAKFHQKMLFKGVY
LACSSFETGFICEPMTEEMIDLAIAKADESFDEIIKGV"
misc_feature 316606..317871
/locus_tag="hp2018_0317"
/note="glutamate-1-semialdehyde aminotransferase;
Provisional; Region: PRK00062"
/db_xref="CDD:178834"
misc_feature 316621..317862
/locus_tag="hp2018_0317"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(316939..316947,317023..317028,317032..317034,
317203..317205,317302..317304,317308..317313,
317386..317388)
/locus_tag="hp2018_0317"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(316942..316947,317023..317028,317203..317205,
317302..317304,317311..317313,317386..317388)
/locus_tag="hp2018_0317"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 317386..317388
/locus_tag="hp2018_0317"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 317891..318154
/locus_tag="hp2018_0318"
/db_xref="GeneID:12371511"
CDS 317891..318154
/locus_tag="hp2018_0318"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791136.1"
/db_xref="GI:385231217"
/db_xref="GeneID:12371511"
/translation="MKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISW
LFWLGVIWGVLASFLNVYKAYKNMQKDYEELAKDPKYTQNKTK"
misc_feature 317927..318088
/locus_tag="hp2018_0318"
/note="Putative F0F1-ATPase subunit (ATPase_gene1);
Region: ATPase_gene1; pfam09527"
/db_xref="CDD:220279"
gene 318170..318571
/locus_tag="hp2018_0319"
/db_xref="GeneID:12371512"
CDS 318170..318571
/locus_tag="hp2018_0319"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791137.1"
/db_xref="GI:385231218"
/db_xref="GeneID:12371512"
/translation="MCQIQCLLILLFINIASAIVVYFFQAFQGVLNFEGGFLGFFIVA
LSSYYGVKKRLDLRKQNGEKEEKQKFQKFAIGLEMSFNVWRLGGYGVLLGILGTLLFL
HLFNGLSFLIGVFVSSLSSALLRFLNNHGKF"
gene 318655..319539
/locus_tag="hp2018_0320"
/db_xref="GeneID:12371513"
CDS 318655..319539
/locus_tag="hp2018_0320"
/codon_start=1
/transl_table=11
/product="amidohydrolase like protein"
/protein_id="YP_005791138.1"
/db_xref="GI:385231219"
/db_xref="GeneID:12371513"
/translation="MKTKNPAKRILKTAVIQMQSKPYALNENLQLALNLAKEAHNKGA
NLIVLPELFDSGYCVKDKDTDFGLDFKAIEHGEETLKNETLKALSGFAKSSDTHIVAC
SIEKNNKKLYDSAYIIPPKGKIVGKHRKIYLWGDEKSRFKRGKKYEVFTLDFGDFSAK
VGLQICYEIGFGVGANLLALQGAEVLIYPSAFGKARAYNWDLLSRARALENGCFVCAC
NHSGGETNAKLKQTLEFAGDSRIIAPNGKIIAQATKLNEVIIAEMDLNEVALQRQKIP
YLQDFDTKLTKKGFGKLT"
misc_feature 318679..319500
/locus_tag="hp2018_0320"
/note="Predicted amidohydrolase [General function
prediction only]; Region: COG0388"
/db_xref="CDD:30737"
misc_feature 318694..319500
/locus_tag="hp2018_0320"
/note="Nitrilase superfamily, including nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes;
Region: nitrilase; cd07197"
/db_xref="CDD:143587"
misc_feature order(318805..318807,319042..319044,319054..319056,
319063..319065,319150..319155,319159..319164,
319225..319227)
/locus_tag="hp2018_0320"
/note="active site"
/db_xref="CDD:143587"
misc_feature order(318805..318807,319042..319044,319150..319152)
/locus_tag="hp2018_0320"
/note="catalytic triad [active]"
/db_xref="CDD:143587"
misc_feature order(319045..319056,319060..319062,319081..319089,
319153..319155,319159..319173,319180..319185,
319258..319263,319267..319275,319279..319284,
319363..319368,319489..319500)
/locus_tag="hp2018_0320"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143587"
gene 319552..320433
/locus_tag="hp2018_0321"
/db_xref="GeneID:12371514"
CDS 319552..320433
/locus_tag="hp2018_0321"
/codon_start=1
/transl_table=11
/product="Putative polysaccharide deacetylase"
/protein_id="YP_005791139.1"
/db_xref="GI:385231220"
/db_xref="GeneID:12371514"
/translation="MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIP
RLLKLFKKYHLPATWFAPGHSIETFPEPMKMIVDAGHEVGAHGYSHENPIAMTAKQEE
DVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYFVR
VGDSWSKIDYSLEAKDWMKPLIRGMETNLVEIPANWYLDDLPPMMFIKKSPNSFGFVS
PRDIGQMWIDQFDWVYREMDYAVFSMTIHPDVSGRPQVLLIHEKIIEYINQHEGVRWV
TFNEIADDFLKRNPRKK"
misc_feature 319570..320409
/locus_tag="hp2018_0321"
/note="Catalytic domain of Helicobacter pylori
peptidoglycan deacetylase (HpPgdA) and similar proteins;
Region: CE4_HpPgdA_like; cd10938"
/db_xref="CDD:200563"
misc_feature order(319585..319587,319591..319593,319807..319809,
319819..319821,320290..320292)
/locus_tag="hp2018_0321"
/note="active site"
/db_xref="CDD:200563"
misc_feature order(319591..319593,320290..320292)
/locus_tag="hp2018_0321"
/note="catalytic site [active]"
/db_xref="CDD:200563"
misc_feature order(319591..319593,319807..319809,319819..319821)
/locus_tag="hp2018_0321"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:200563"
misc_feature order(319609..319614,319636..319641,319645..319653,
319657..319662,319672..319674,319684..319686,
319741..319743,319750..319758,319813..319818,
319822..319827,319834..319839,319846..319851,
319858..319863,319870..319872,319930..319935,
319939..319941,319993..320013,320134..320142,
320155..320163,320167..320175,320221..320226,
320233..320238,320245..320247,320308..320316,
320320..320325,320332..320334)
/locus_tag="hp2018_0321"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:200563"
misc_feature <319675..320196
/locus_tag="hp2018_0321"
/note="Predicted xylanase/chitin deacetylase [Carbohydrate
transport and metabolism]; Region: CDA1; COG0726"
/db_xref="CDD:31070"
gene 320479..320865
/locus_tag="hp2018_0322"
/db_xref="GeneID:12371515"
CDS 320479..320865
/locus_tag="hp2018_0322"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791140.1"
/db_xref="GI:385231221"
/db_xref="GeneID:12371515"
/translation="MCVLCGELISSFHWSDENYGTDKSDSYGSDENLRKPNAVISANE
NARERKRARLKRVGLLNQILAFYGLKIDDWQGAKFVLRDKKGQSVIVNDLGDLWGKAQ
NLAKKKMDALDSNLLAFLNQNPHATR"
gene 320865..321830
/locus_tag="hp2018_0323"
/db_xref="GeneID:12371516"
CDS 320865..321830
/locus_tag="hp2018_0323"
/codon_start=1
/transl_table=11
/product="ATP/GTP binding protein"
/protein_id="YP_005791141.1"
/db_xref="GI:385231222"
/db_xref="GeneID:12371516"
/translation="MPKIPITLITGFLGSGKTSFLSEYLNQIDHQGVALIINEIGQAA
LDQRILSVQYCGEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWRGEILKRVIIETTG
LANPAPILWTILSDVFLGVHFEIQSVVVCVDALNAKTHLTNNEAKEQIVFADSVLLTK
TDLQNDSAALIKLKERIQSLNPSAEIFDKKSIDYESFFSRKNGARNFMPRMPKDSHSQ
GFETLSVSFEGAMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGSDLLVSINGVMHIIY
PPKHILTDQNGSNLVFIARHLGREKILNSLKGFKDFLGIKGFETP"
misc_feature 320874..321791
/locus_tag="hp2018_0323"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:30869"
misc_feature 320877..321428
/locus_tag="hp2018_0323"
/note="CobW/HypB/UreG, nucleotide-binding domain; Region:
cobW; pfam02492"
/db_xref="CDD:202255"
misc_feature 321522..321791
/locus_tag="hp2018_0323"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; pfam07683"
/db_xref="CDD:203723"
gene complement(321836..322981)
/locus_tag="hp2018_0324"
/db_xref="GeneID:12371517"
CDS complement(321836..322981)
/locus_tag="hp2018_0324"
/codon_start=1
/transl_table=11
/product="nitrite extrusion protein"
/protein_id="YP_005791142.1"
/db_xref="GI:385231223"
/db_xref="GeneID:12371517"
/translation="MRVFVCFLGVFVSNGLARFGYVVLIPLLILSGSLTPHQSFQLGI
AVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLVCYFDSIPFFWLWIWRFIAG
VASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFVLPWISSYNIKWAWI
FLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWLLLISCALNAIGFLPHT
LFWVDYLIRNLNISPTIAGTSWAFFGFGATLGSLISGPMAQKLGAKNANIFILILKSI
ACFLPIFFHQISLLNLSIFIMGAATTANINLFSMMALKIAGAKHFAKASSWVVFSFGI
FQALFSYLFTIFLGDLGYVLIFVICGACLVLSFIVLFPIKMQTATHK"
misc_feature complement(321860..322981)
/locus_tag="hp2018_0324"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:32643"
misc_feature complement(321869..322972)
/locus_tag="hp2018_0324"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(321974..321976,321983..321988,
321995..322000,322007..322012,322043..322045,
322052..322057,322067..322069,322076..322081,
322088..322090,322229..322231,322241..322243,
322250..322252,322262..322264,322274..322276,
322316..322318,322325..322330,322337..322342,
322349..322351,322562..322564,322580..322585,
322592..322597,322631..322633,322640..322645,
322652..322657,322664..322669,322808..322813,
322817..322822,322832..322834,322841..322846,
322853..322855,322904..322909,322913..322921,
322928..322930))
/locus_tag="hp2018_0324"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(323184..323879)
/locus_tag="hp2018_0325"
/db_xref="GeneID:12371518"
CDS complement(323184..323879)
/locus_tag="hp2018_0325"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791143.1"
/db_xref="GI:385231224"
/db_xref="GeneID:12371518"
/translation="MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNT
TEIFYFNNIIGLMGLLIISSAIFGLTQAITSSRSHNIFLFYMLSPATFKQITLALIAS
RLIVVILYAFIFIILSFYALNIITILNFKALILGFVSVFSSILGFCNIINLYVLMSCN
VFVPLEYLPNIGQLFIKTSIFYYLNQLLIKAFQGIDTILVLATSTFFIIGGIILFLLS
ANRMLLTPKERMR"
misc_feature complement(323879..324566)
/note="potential frameshift: common BLAST hit:
gi|298736305|ref|YP_003728831.1| putative ABC transporter
ATP-binding protein"
gene complement(323879..324085)
/locus_tag="hp2018_03261"
/db_xref="GeneID:12371519"
CDS complement(323879..324085)
/locus_tag="hp2018_03261"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_005791144.1"
/db_xref="GI:385231225"
/db_xref="GeneID:12371519"
/translation="MRNTQQLTSIIATHDPIVLDSCEWVLLLKNGNIAQYKPLNSILK
SVAKTFNFKEKPTTKDLLALLKDI"
misc_feature complement(323909..>324064)
/locus_tag="hp2018_03261"
/note="ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only]; Region: ArpD; COG4618"
/db_xref="CDD:226969"
gene complement(324078..324566)
/locus_tag="hp2018_03262"
/db_xref="GeneID:12371520"
CDS complement(324078..324566)
/locus_tag="hp2018_03262"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_005791145.1"
/db_xref="GI:385231226"
/db_xref="GeneID:12371520"
/translation="MISNIRIHPKTMFKNALNIQDFSFKSHTSTAIIGTNGAGKSTLI
NTILGIRSDYNFKAQNNNIPYHDNVIPQRKQLGVVSNLFNYPPGLNANDLFKFYQFFH
KNCTPNLFEKNLLNKTYEHLSDGQKQRLKIDLALSHHPQLIIMDEPETSLEQNIKSHK
LA"
misc_feature complement(<324111..324527)
/locus_tag="hp2018_03262"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(324444..324467)
/locus_tag="hp2018_03262"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(324126..324131,324324..324326,
324441..324449,324453..324458))
/locus_tag="hp2018_03262"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(324123..324446)
/locus_tag="hp2018_03262"
/note="ABC transporter; Region: ABC_tran; pfam00005"
/db_xref="CDD:200922"
misc_feature complement(324324..324335)
/locus_tag="hp2018_03262"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(324174..324203)
/locus_tag="hp2018_03262"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(324126..324143)
/locus_tag="hp2018_03262"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(324111..324119)
/locus_tag="hp2018_03262"
/note="D-loop; other site"
/db_xref="CDD:72971"
gene complement(325144..325899)
/locus_tag="hp2018_0327"
/db_xref="GeneID:12371521"
CDS complement(325144..325899)
/locus_tag="hp2018_0327"
/codon_start=1
/transl_table=11
/product="Putative heme oxygenase"
/protein_id="YP_005791146.1"
/db_xref="GI:385231227"
/db_xref="GeneID:12371521"
/translation="MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIV
IGYNNNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFRKDFDSVC
LATLHPNGHVVCSYAPLMTDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKS
AILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEG
RFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKK"
misc_feature complement(325162..325890)
/locus_tag="hp2018_0327"
/note="heme oxygenase, HugZ family; Region: heme_ox_HugZ;
TIGR04109"
/db_xref="CDD:200360"
misc_feature complement(325678..325890)
/locus_tag="hp2018_0327"
/note="Protein of unknown function (DUF2470); Region:
DUF2470; pfam10615"
/db_xref="CDD:204534"
misc_feature complement(325201..325632)
/locus_tag="hp2018_0327"
/note="Pyridoxine 5'-phosphate (PNP) oxidase-like
proteins; Region: PNPOx_like; cl00381"
/db_xref="CDD:241827"
gene 326090..326215
/locus_tag="hp2018_0328"
/db_xref="GeneID:12371522"
CDS 326090..326215
/locus_tag="hp2018_0328"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791147.1"
/db_xref="GI:385231228"
/db_xref="GeneID:12371522"
/translation="MIKIKLFYNFNCKKYLKHFLNSIKTDLDSIFSGNFGFDFYA"
gene complement(326174..327799)
/gene="argS"
/locus_tag="hp2018_0329"
/db_xref="GeneID:12371523"
CDS complement(326174..327799)
/gene="argS"
/locus_tag="hp2018_0329"
/EC_number="6.1.1.19"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_005791148.1"
/db_xref="GI:385231229"
/db_xref="GeneID:12371523"
/translation="MHTLIKGVLEEVLEAEVIIEYPKDREHGHYATPIAFNLAKVFKK
SPLAIAEELALKISTHKKTQGFFDSVVAFKGYINFTLSLDFLDRFTQKALELKEQFGS
QVKSERSQKIFLEFVSANPTGPLHIGHARGAVFGDSLAKIARFLGHEVLCEYYVNDMG
SQIRLLGLSVWLAYREHVLKESVTYPEVFYKGEYIIEIAKKAHNDLEPSLFKENEETI
IEVLSGYAKDLMLLEIKGNLDALGIHFDSYASEREIFKHKDAVFERLERANALYEKDS
KIWLKSSLYQDESDRVLIKEDKSYTYLAGDIVYHDEKFQQNYTKYINIWGADHHGYIA
RVKASLEFLGYDSNKLEVLLAQMVRLLKDNEPYKMSKRAGNFILIKDVIDDVGKDALR
FIFLSKRLDTHLEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEIWQTPLK
NLNAEEKYLLFSALSLPKAVESSFEEYGLQKMCEYAKTLASEFHRFYNAGKILDTPKA
KELLKICLMVSLSLTNAFKLLGIEIKTKISAKD"
misc_feature complement(327557..>327739)
/gene="argS"
/locus_tag="hp2018_0329"
/note="Arginyl tRNA synthetase N terminal dom; Region:
Arg_tRNA_synt_N; smart01016"
/db_xref="CDD:198084"
misc_feature complement(326189..327736)
/gene="argS"
/locus_tag="hp2018_0329"
/note="arginyl-tRNA synthetase; Region: argS; TIGR00456"
/db_xref="CDD:161886"
misc_feature complement(326678..327469)
/gene="argS"
/locus_tag="hp2018_0329"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature complement(order(326804..326806,326813..326815,
326882..326884,326894..326896,327413..327415,
327422..327424,327440..327442,327446..327448,
327455..327457))
/gene="argS"
/locus_tag="hp2018_0329"
/note="active site"
/db_xref="CDD:185675"
misc_feature complement(327413..327424)
/gene="argS"
/locus_tag="hp2018_0329"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature complement(326684..326695)
/gene="argS"
/locus_tag="hp2018_0329"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature complement(326204..326650)
/gene="argS"
/locus_tag="hp2018_0329"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:212339"
misc_feature complement(order(326309..326311,326318..326320,
326327..326329,326348..326350,326501..326506,
326510..326515,326525..326527,326552..326554,
326561..326563,326573..326575))
/gene="argS"
/locus_tag="hp2018_0329"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature complement(order(326309..326311,326501..326506,
326513..326518,326525..326527))
/gene="argS"
/locus_tag="hp2018_0329"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene complement(327802..328047)
/gene="tatA"
/locus_tag="hp2018_0330"
/db_xref="GeneID:12371524"
CDS complement(327802..328047)
/gene="tatA"
/locus_tag="hp2018_0330"
/codon_start=1
/transl_table=11
/product="Twin-arginine translocation protein"
/protein_id="YP_005791149.1"
/db_xref="GI:385231230"
/db_xref="GeneID:12371524"
/translation="MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAV
KDDEEEAKNEPKTLDAQATQAKVHESSEIKSTQKQES"
misc_feature complement(<327928..328035)
/gene="tatA"
/locus_tag="hp2018_0330"
/note="mttA/Hcf106 family; Region: MttA_Hcf106; pfam02416"
/db_xref="CDD:145520"
gene complement(328119..328739)
/gene="gmk"
/locus_tag="hp2018_0331"
/db_xref="GeneID:12371525"
CDS complement(328119..328739)
/gene="gmk"
/locus_tag="hp2018_0331"
/EC_number="2.7.4.8"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_005791150.1"
/db_xref="GI:385231231"
/db_xref="GeneID:12371525"
/translation="MNNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPR
EGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDI
DVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLE
SFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL"
misc_feature complement(328155..328736)
/gene="gmk"
/locus_tag="hp2018_0331"
/note="Guanylate kinase [Nucleotide transport and
metabolism]; Region: Gmk; COG0194"
/db_xref="CDD:223272"
misc_feature complement(328221..328721)
/gene="gmk"
/locus_tag="hp2018_0331"
/note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine triphosphate
(ATP) to guanosine monophosphate (GMP) to yield adenosine
diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
/db_xref="CDD:238026"
misc_feature complement(order(328497..328499,328512..328514,
328581..328583,328608..328610,328617..328619,
328638..328640,328686..328688,328704..328706))
/gene="gmk"
/locus_tag="hp2018_0331"
/note="catalytic site [active]"
/db_xref="CDD:238026"
misc_feature complement(order(328686..328688,328704..328706))
/gene="gmk"
/locus_tag="hp2018_0331"
/note="G-X2-G-X-G-K; other site"
/db_xref="CDD:238026"
gene complement(328732..330210)
/locus_tag="hp2018_0332"
/db_xref="GeneID:12371526"
CDS complement(328732..330210)
/locus_tag="hp2018_0332"
/codon_start=1
/transl_table=11
/product="poly E-rich protein"
/protein_id="YP_005791151.1"
/db_xref="GI:385231232"
/db_xref="GeneID:12371526"
/translation="MKMILFNQNPMIEKLLESVSKKLELSIENFNHYQELSARLKGDP
EWLLIADDECLEKLDQVDWLELKETISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFL
PTEMLKVLQKKLGSNMSELEPSQNSDPTQEILETNWDELENLGDLEALAKEEPNNEEQ
LLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQG
SVEPPKDEEVSKELETQEQEPIKEETQEIKEEKQEKTQDSPNVQELEAMQELVKEIQE
NSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEIAEKTQAQGLEKEEIAETP
QEKEIQETQDETPQELEVQDEKLQENETPKDENMQESAQNLQEKETQELETPQTQEDH
YENIEDIPEPVMTKAMGEELPFLNENDTETPKENDTETPKESVIKTPQEKEESDKTSS
PLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKPNE"
gene 330355..330897
/gene="nucT"
/locus_tag="hp2018_0333"
/db_xref="GeneID:12371527"
CDS 330355..330897
/gene="nucT"
/locus_tag="hp2018_0333"
/codon_start=1
/transl_table=11
/product="membrane bound endonuclease"
/protein_id="YP_005791152.1"
/db_xref="GI:385231233"
/db_xref="GeneID:12371527"
/translation="MLNKFKKIVGVGVLVSCLGVLQAKNSLFVLPYEQRDALNSLISG
ISSARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYDYESNHNNKQSTIGYLDKYP
NTKVCLLKGLKAKNGNYYGIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDT
ETILKAKSYYQKMLESCVGF"
misc_feature 330364..330894
/gene="nucT"
/locus_tag="hp2018_0333"
/note="nuclease NucT; Provisional; Region: PRK13912"
/db_xref="CDD:184389"
misc_feature 330436..330879
/gene="nucT"
/locus_tag="hp2018_0333"
/note="Catalytic domain of EDTA-resistant nuclease Nuc,
vertebrate phospholipase D6, and similar proteins; Region:
PLDc_Nuc_like; cd09116"
/db_xref="CDD:197215"
misc_feature order(330724..330726,330730..330732,330769..330771,
330775..330777,330808..330810)
/gene="nucT"
/locus_tag="hp2018_0333"
/note="putative active site [active]"
/db_xref="CDD:197215"
misc_feature 330724..330726
/gene="nucT"
/locus_tag="hp2018_0333"
/note="catalytic site [active]"
/db_xref="CDD:197215"
gene complement(330905..331624)
/locus_tag="hp2018_0334"
/db_xref="GeneID:12371528"
CDS complement(330905..331624)
/locus_tag="hp2018_0334"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005791153.1"
/db_xref="GI:385231234"
/db_xref="GeneID:12371528"
/translation="MLVGVSLLTHALMATEESAAPSWTKNLYMGFNYQTGSINLMTNI
HEVREVTSYQTGYTNVMTSINSVKKLTNMGSNGIGLVMGYNHFFHPDKVLGLRYFAFL
DWQGYGMRYPKGYYGGNNMITYGVGVDAIWNFFQGSFYQDDIGVDIGVFVGIAIAGNS
WYIGNKGQELLGITNSSRVDNTSFQFLFNFGFKALFVDEHEFEIGFKFPTLNNKYYTT
DALRVQMRRVFAFYVGYNYHF"
misc_feature complement(330908..331390)
/locus_tag="hp2018_0334"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 331780..332493
/gene="flgH"
/locus_tag="hp2018_0335"
/db_xref="GeneID:12371529"
CDS 331780..332493
/gene="flgH"
/locus_tag="hp2018_0335"
/codon_start=1
/transl_table=11
/product="Flagellar basal body L-ring protein"
/protein_id="YP_005791154.1"
/db_xref="GI:385231235"
/db_xref="GeneID:12371529"
/translation="MKKALYLGAVAFGVAFSMASANEPNIDFNPPNYVEETPSKEFIP
ELNKLGSLFGQGERPLFADRRAMKPNDLITIIVSEKASANYSSSKDYKSASGGNSTPP
RLTYNGLDERKKKEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKV
LENGNYFIYGNKEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHL
SDSNKKKFAADAMETQMPY"
misc_feature 331780..332481
/gene="flgH"
/locus_tag="hp2018_0335"
/note="Flagellar basal body L-ring protein [Cell motility
and secretion]; Region: FlgH; COG2063"
/db_xref="CDD:224974"
misc_feature 331837..332490
/gene="flgH"
/locus_tag="hp2018_0335"
/note="flagellar basal body L-ring protein; Reviewed;
Region: flgH; PRK00249"
/db_xref="CDD:234700"
gene 332516..333205
/gene="neuA1"
/locus_tag="hp2018_03361"
/db_xref="GeneID:12371530"
CDS 332516..333205
/gene="neuA1"
/locus_tag="hp2018_03361"
/codon_start=1
/transl_table=11
/product="CMP-N-Acetylneuraminate cytidylyltransferase"
/protein_id="YP_005791155.1"
/db_xref="GI:385231236"
/db_xref="GeneID:12371530"
/translation="MRAIAIVLARSSSKRIKNKNMIDFFNKPMLAYPIETALNSKLFE
KVFISSDSMEYVNLAKNYGASFLNLRPKNLADDRATTLEVMAYHMKELELKDDDIACC
LYGASVFLQEKHLQNACETLKQNQNTDYVFTCSPFSASPYRSFSLENGVQMAFKEHSN
TRTQDLKTLYHDAGLLYMGKAQAFKEMRPIFSPNSIALELSPLEVQDIDTLEDLELAK
LKYSRLKNACQ"
misc_feature 332519..333166
/gene="neuA1"
/locus_tag="hp2018_03361"
/note="CMP-NeuAc_Synthase activates N-acetylneuraminic
acid by adding CMP moiety; Region: CMP-NeuAc_Synthase;
cd02513"
/db_xref="CDD:133006"
misc_feature order(332537..332545,332555..332557,332573..332575,
332723..332725,332735..332737,332756..332758,
332825..332827,332831..332833,333029..333031,
333044..333046,333140..333142)
/gene="neuA1"
/locus_tag="hp2018_03361"
/note="ligand binding site; other site"
/db_xref="CDD:133006"
misc_feature order(332582..332584,332588..332593,332909..332911,
332921..332926,333020..333031,333044..333046,
333098..333100,333104..333106,333140..333142,
333149..333154,333161..333163)
/gene="neuA1"
/locus_tag="hp2018_03361"
/note="tetramer interface; other site"
/db_xref="CDD:133006"
gene 333211..334062
/gene="neuA2"
/locus_tag="hp2018_03362"
/db_xref="GeneID:12371531"
CDS 333211..334062
/gene="neuA2"
/locus_tag="hp2018_03362"
/EC_number="3.1.21.5"
/codon_start=1
/transl_table=11
/product="CMP-N-Acetylneuraminate cytidylyltransferase"
/protein_id="YP_005791156.1"
/db_xref="GI:385231237"
/db_xref="GeneID:12371531"
/translation="MCDAFVTSGLGHVRRCEKILSFIEKLGVEASLYLHKQDNIGAFL
EGVGGNDFLIADSYCLNSKDFYLLKEKAKSLMVIEDEEHAKGFYPKNTKIMNFTLNAL
KHYSHVSKDHYLGVGFYPVDARFIYDRPINTENKEVLITLGGSEQKMLEEIVKILENK
NVNLHIISPYTPKNPPKNTHYYSPLNPLEFSSLMKFCACAISAAGQTLYELALSQTPS
LILPIASNQIIQSKEFESLGIFKQTSLKTLAKDFEKLQIQKNQAWAKTLAFGSELESA
LREFLEI"
misc_feature 333214..334059
/gene="neuA2"
/locus_tag="hp2018_03362"
/note="Spore coat polysaccharide biosynthesis protein,
predicted glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: spsG; COG3980"
/db_xref="CDD:33760"
gene 334059..334601
/locus_tag="hp2018_0337"
/db_xref="GeneID:12371532"
CDS 334059..334601
/locus_tag="hp2018_0337"
/codon_start=1
/transl_table=11
/product="putative flagellar biosynthesis protein"
/protein_id="YP_005791157.1"
/db_xref="GI:385231238"
/db_xref="GeneID:12371532"
/translation="MKKNYSYKNIQAIDFTQLNDEEKLLVLEFRNHPNTALWMYSAFI
SLKTHLQFIEDLKNSPSHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNK
GRIILKALERIAFEELQLHSLHLEVMETNHKAIAFYEKNHYELEGRLKGFISKDKEFI
DVLLYYKDKKGYSDQSPLKL"
misc_feature 334095..334556
/locus_tag="hp2018_0337"
/note="pseudaminic acid biosynthesis N-acetyl transferase;
Region: PseH; TIGR03585"
/db_xref="CDD:132624"
misc_feature 334260..334490
/locus_tag="hp2018_0337"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:201324"
gene complement(334534..335472)
/gene="lpxK"
/locus_tag="hp2018_0338"
/db_xref="GeneID:12371533"
CDS complement(334534..335472)
/gene="lpxK"
/locus_tag="hp2018_0338"
/EC_number="2.7.1.130"
/codon_start=1
/transl_table=11
/product="tetraacyldisaccharide 4'-kinase"
/protein_id="YP_005791158.1"
/db_xref="GI:385231239"
/db_xref="GeneID:12371533"
/translation="MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQCIATIKRKTA
KKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGN
ILVPQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGSKIVFLDDGFRFNFNQF
NALLKPKVPPYYPFCLPSGLYRESIESYKEAHLVVTEDKDYKRITSIAHPTKRMLLVT
AIANPSRLDAFLPKEVVKKLYFRDHAPFDLKLLEKEFYQNNATSLLVTSKDCVKLQDC
NLPLSVLDLKLEICPKVLEEIDRYILSYPYNTKERL"
misc_feature complement(334537..335463)
/gene="lpxK"
/locus_tag="hp2018_0338"
/note="Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope
biogenesis, outer membrane]; Region: LpxK; COG1663"
/db_xref="CDD:31849"
misc_feature complement(334570..335460)
/gene="lpxK"
/locus_tag="hp2018_0338"
/note="tetraacyldisaccharide 4'-kinase; Reviewed; Region:
lpxK; PRK00652"
/db_xref="CDD:179082"
gene complement(335469..336251)
/gene="nadE"
/locus_tag="hp2018_0339"
/db_xref="GeneID:12371534"
CDS complement(335469..336251)
/gene="nadE"
/locus_tag="hp2018_0339"
/EC_number="6.3.1.5"
/codon_start=1
/transl_table=11
/product="NAD synthetase"
/protein_id="YP_005791159.1"
/db_xref="GI:385231240"
/db_xref="GeneID:12371534"
/translation="MQKDYQKLIAYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVL
CQKVFKENAHALLMPSSVSMPESKTDALDLCETFSIPYTEYSIAPYDKIFGSHFKDAS
LTRKGNFCARLRMAFLYDYSLKSNSLVIGTSNKSERMLGYGTLFGDLACAINPIGELF
KTEVYELACHLNIPKKILDKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKP
IHLETLTQLGYDEILVKNIINRIQKNAFKLELPTIAKRFNPE"
misc_feature complement(335511..336245)
/gene="nadE"
/locus_tag="hp2018_0339"
/note="NAD+ synthase is a homodimer, which catalyzes the
final step in de novo nicotinamide adenine dinucleotide
(NAD+) biosynthesis, an amide transfer from either ammonia
or glutamine to nicotinic acid adenine dinucleotide
(NaAD). The conversion of NaAD to NAD...; Region:
NAD_synthase; cd00553"
/db_xref="CDD:30166"
misc_feature complement(335499..336230)
/gene="nadE"
/locus_tag="hp2018_0339"
/note="NAD synthase; Region: NAD_synthase; pfam02540"
/db_xref="CDD:202275"
misc_feature complement(order(335514..335516,335778..335783,
335790..335807,335814..335819,335880..335885,
335889..335897,335901..335909,335913..335918,
335925..335927,335937..335939,335976..335981,
335988..335993,336000..336011,336195..336200,
336207..336209,336216..336221))
/gene="nadE"
/locus_tag="hp2018_0339"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:30166"
misc_feature complement(order(335511..335516,335667..335669,
335694..335696,335700..335705,335808..335810,
335817..335828,335841..335843,335856..335858,
335910..335912,335916..335921,335928..335930,
335940..335942,336078..336086,336138..336140,
336153..336164))
/gene="nadE"
/locus_tag="hp2018_0339"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:30166"
misc_feature complement(order(335703..335708,335769..335771,
335856..335858,335910..335912,336078..336083,
336138..336143,336153..336161))
/gene="nadE"
/locus_tag="hp2018_0339"
/note="ATP binding pocket [chemical binding]; other site"
/db_xref="CDD:30166"
misc_feature complement(order(335703..335705,335841..335843,
336141..336143,336153..336155))
/gene="nadE"
/locus_tag="hp2018_0339"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:30166"
misc_feature complement(order(335664..335687,335694..335717,
336057..336059))
/gene="nadE"
/locus_tag="hp2018_0339"
/note="active-site loop [active]"
/db_xref="CDD:30166"
gene 336335..336412
/locus_tag="hp2018_t10"
/db_xref="GeneID:12371535"
tRNA 336335..336412
/locus_tag="hp2018_t10"
/product="tRNA-Arg"
/db_xref="GeneID:12371535"
gene 336500..337492
/gene="ilvC"
/locus_tag="hp2018_0340"
/db_xref="GeneID:12371536"
CDS 336500..337492
/gene="ilvC"
/locus_tag="hp2018_0340"
/EC_number="1.1.1.86"
/codon_start=1
/transl_table=11
/product="ketol-acid reductoisomerase"
/protein_id="YP_005791160.1"
/db_xref="GI:385231241"
/db_xref="GeneID:12371536"
/translation="MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKV
RIGLYQGSLSVSKAKKEGFEVLGVKELVQQSDVIMALLPDELHKEVLEKEVIPFLKEG
QIVGFAHGFSVHFNQVILPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSK
NNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLLK
AGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKAREPMGNLLEKRM
QKILKKIQNGAFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRAPFNHKK"
misc_feature 336512..337489
/gene="ilvC"
/locus_tag="hp2018_0340"
/note="ketol-acid reductoisomerase; Provisional; Region:
PRK05479"
/db_xref="CDD:180113"
misc_feature 336542..337039
/gene="ilvC"
/locus_tag="hp2018_0340"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvN; pfam07991"
/db_xref="CDD:116601"
misc_feature 337055..337489
/gene="ilvC"
/locus_tag="hp2018_0340"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvC; pfam01450"
/db_xref="CDD:110451"
gene 337516..338322
/gene="minD"
/locus_tag="hp2018_0341"
/db_xref="GeneID:12371537"
CDS 337516..338322
/gene="minD"
/locus_tag="hp2018_0341"
/codon_start=1
/transl_table=11
/product="Septum site-determining protein"
/protein_id="YP_005791161.1"
/db_xref="GI:385231242"
/db_xref="GeneID:12371537"
/translation="MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLR
NLDMILGLENRIVFDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKV
AILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIID
AKSNRAKRGEEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDSHIISA
TNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKKGFFSALKGIFS"
misc_feature 337576..338316
/gene="minD"
/locus_tag="hp2018_0341"
/note="septum site-determining protein MinD; Region:
minD_bact; TIGR01968"
/db_xref="CDD:131023"
misc_feature 337576..338223
/gene="minD"
/locus_tag="hp2018_0341"
/note="Bacterial cell division requires the formation of a
septum at mid-cell. The site is determined by the min
operon products MinC, MinD and MinE. MinC is a nonspecific
inhibitor of the septum protein FtsZ. MinE is the
supressor of MinC. MinD plays a pivotal...; Region: MinD;
cd02036"
/db_xref="CDD:73299"
misc_feature 337627..337635
/gene="minD"
/locus_tag="hp2018_0341"
/note="Switch I; other site"
/db_xref="CDD:73299"
misc_feature 337870..337884
/gene="minD"
/locus_tag="hp2018_0341"
/note="Switch II; other site"
/db_xref="CDD:73299"
gene 338319..338552
/gene="minE"
/locus_tag="hp2018_0342"
/db_xref="GeneID:12371538"
CDS 338319..338552
/gene="minE"
/locus_tag="hp2018_0342"
/codon_start=1
/transl_table=11
/product="cell division topological specificity factor"
/protein_id="YP_005791162.1"
/db_xref="GI:385231243"
/db_xref="GeneID:12371538"
/translation="MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIA
VIQKYTKSSDIHFKTLDSNQSVETIEVEIILPK"
misc_feature 338319..338546
/gene="minE"
/locus_tag="hp2018_0342"
/note="cell division topological specificity factor MinE;
Region: minE; TIGR01215"
/db_xref="CDD:188120"
gene 338559..339359
/gene="dprA"
/locus_tag="hp2018_0343"
/db_xref="GeneID:12371539"
CDS 338559..339359
/gene="dprA"
/locus_tag="hp2018_0343"
/codon_start=1
/transl_table=11
/product="DNA processing protein DprA"
/protein_id="YP_005791163.1"
/db_xref="GI:385231244"
/db_xref="GeneID:12371539"
/translation="MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAI
IGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDL
IYPTNNHKVIQEIVQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLQSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLGKGQAQGIFNIQNFINTLLKDYHLKE
MPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHLVVLA"
misc_feature 338559..339188
/gene="dprA"
/locus_tag="hp2018_0343"
/note="DNA protecting protein DprA; Region: dprA;
TIGR00732"
/db_xref="CDD:129815"
misc_feature <338589..339338
/gene="dprA"
/locus_tag="hp2018_0343"
/note="Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion];
Region: Smf; COG0758"
/db_xref="CDD:31101"
gene 339356..339760
/locus_tag="hp2018_0344"
/db_xref="GeneID:12371540"
CDS 339356..339760
/locus_tag="hp2018_0344"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase like protein"
/protein_id="YP_005791164.1"
/db_xref="GI:385231245"
/db_xref="GeneID:12371540"
/translation="MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLL
REKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGEIVFINEDNSSVEAYDNLEHLGK
KNKRLATKDGRLDSLSACRILERYCQQVLKKG"
misc_feature 339356..339742
/locus_tag="hp2018_0344"
/note="Holliday junction resolvase-like protein; Reviewed;
Region: PRK00109"
/db_xref="CDD:178870"
gene 339808..340125
/locus_tag="hp2018_0345"
/db_xref="GeneID:12371541"
CDS 339808..340125
/locus_tag="hp2018_0345"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791165.1"
/db_xref="GI:385231246"
/db_xref="GeneID:12371541"
/translation="MLGNFKKAIFRVLCLCLLGGGLMASQTPKELYDLGVESYKAKDY
IKAKKYFEKACGLNNGGGCGALGNLYDDGKGVEKNLIKAAQYISKACKLGDQEACEAL
KEK"
misc_feature <340015..340092
/locus_tag="hp2018_0345"
/note="Sel1 repeat; Region: Sel1; cl02723"
/db_xref="CDD:207711"
gene 340321..340650
/locus_tag="hp2018_0346"
/db_xref="GeneID:12371542"
CDS 340321..340650
/locus_tag="hp2018_0346"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791166.1"
/db_xref="GI:385231247"
/db_xref="GeneID:12371542"
/translation="MHQVKDFLDFCKQTIHKNSNEAFQKTKRVLFKEKSQKIREQAVK
IVEKRLKKEGMQLSDFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEK
GDNEQEK"
gene 340634..341194
/locus_tag="hp2018_0347"
/db_xref="GeneID:12371543"
CDS 340634..341194
/locus_tag="hp2018_0347"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791167.1"
/db_xref="GI:385231248"
/db_xref="GeneID:12371543"
/translation="MNKKNSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSI
AFSILITLLVILVDIWIYSDVRQFLLDTSSSFIWLLIALLIKWGVIIISTRKCYQFSQ
KMFALIQRKRQIRENLKNRSNRKDAKNFEKLSNTAEEIISKKQEESRHKEYSNDENHK
DKLSNITEEMILKKQEELKARNNKGN"
gene complement(341352..342233)
/locus_tag="hp2018_0348"
/db_xref="GeneID:12371544"
CDS complement(341352..342233)
/locus_tag="hp2018_0348"
/EC_number="4.2.1.70"
/codon_start=1
/transl_table=11
/product="Ribosomal large subunit pseudouridine synthase
D"
/protein_id="YP_005791168.1"
/db_xref="GI:385231249"
/db_xref="GeneID:12371544"
/translation="MPFVEEEFEILKPTKALFLVRDVLKCSLKEAQRHLDKQRLKQNQ
QAVRKSQIIQGVVSLIYFKPNEKQERLVFEAKDFGAFDKPAQIYTHPKGYFDHESLLD
CIQSHFGKNAHPAHRLDYETSGLVLAGKTLQSTKDLKALFMQKKVKKTYLVLTHGLVD
KSIIIDKPILTPENIQKDLRIRSQISPLGKPSITLVEPLSYNPFLDISLLKITPLTGR
THQIRLHLSSVNHRIVGEGLYGVADENAREYLQLKRENNAPTLMLHAASLEFEFKGAH
YKIASPMPKRFMPFLKD"
misc_feature complement(341379..342221)
/locus_tag="hp2018_0348"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature complement(341424..341996)
/locus_tag="hp2018_0348"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature complement(order(341565..341567,341877..341888))
/locus_tag="hp2018_0348"
/note="active site"
/db_xref="CDD:211346"
gene complement(342233..343783)
/gene="recJ"
/locus_tag="hp2018_0349"
/db_xref="GeneID:12371545"
CDS complement(342233..343783)
/gene="recJ"
/locus_tag="hp2018_0349"
/codon_start=1
/transl_table=11
/product="ssDNA-specific exonuclease RecJ"
/protein_id="YP_005791169.1"
/db_xref="GI:385231250"
/db_xref="GeneID:12371545"
/translation="MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMR
ANTEILVVGDYDADGVISSAIMAKFFKSLNYKHVRVVIPNRFMDGYGISKKFLEKHHA
PLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLHHDKIPDAYAVINPKQPDCDFIQK
EVCGALVAFYLCYGIHQLLKKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYF
LQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQ
DGYSLYERLKACNIKRKMIQQQVFEEAFKHAMVGEKIIVAFKDNWHEGVLGIVASKLV
EATQKPSLVFTFKEGVYKGSARSSPNIDLIDALNGVSSLLLGYGGHAQACGLSVGKNN
IVSLFETLENFDFKVLPFYEKEPPLTLKLKDIDRELLEIIEMGEPYGQENPEPLFQAK
NLEVIEEKIIKESHQVLRFKDKECVKEAIYFNAERFLKAGEKVSVLFSVELDECSNEP
KMFVKSLL"
misc_feature complement(342239..343714)
/gene="recJ"
/locus_tag="hp2018_0349"
/note="single-stranded-DNA-specific exonuclease RecJ;
Region: recJ; TIGR00644"
/db_xref="CDD:161976"
misc_feature complement(343190..343660)
/gene="recJ"
/locus_tag="hp2018_0349"
/note="DHH family; Region: DHH; pfam01368"
/db_xref="CDD:201752"
misc_feature complement(342593..342769)
/gene="recJ"
/locus_tag="hp2018_0349"
/note="DHHA1 domain; Region: DHHA1; pfam02272"
/db_xref="CDD:202185"
gene complement(343792..345291)
/gene="pyrG"
/locus_tag="hp2018_0350"
/db_xref="GeneID:12371546"
CDS complement(343792..345291)
/gene="pyrG"
/locus_tag="hp2018_0350"
/EC_number="6.3.4.2"
/codon_start=1
/transl_table=11
/product="CTP synthase"
/protein_id="YP_005791170.1"
/db_xref="GI:385231251"
/db_xref="GeneID:12371546"
/translation="MKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNR
NLTRLNNFTTGQIFSSVIENERKGEYLGKTIQIVPHVTDEIKRRIKSAAKGLDFLIVE
VGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQEL
RRLGVTPQIILARSPKPLDKELKKKIALSCDVEQDSVIVATDTKSIYACPILFLQEGI
LTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIH
AGAHLDTQVNIEWLDSENFNEETNLEGVDAILVPGGFGERGIEGKICAIQRARLEKLP
FLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYPVVYLIEDFMDQNHQKQVRTYN
SPLGGTMRLGEYECEIMPNSLLEKAYKKPNIKERHRHRYEINPKYRQEWENKGLKVVG
FGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKSALHKS"
misc_feature complement(343795..345291)
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="CTP synthetase; Validated; Region: pyrG; PRK05380"
/db_xref="CDD:180047"
misc_feature complement(344638..345291)
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="CTP synthetase (CTPs) is a two-domain protein,
which consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent...; Region: CTGs;
cd03113"
/db_xref="CDD:48377"
misc_feature complement(order(344737..344739,344839..344847,
344959..344961,344977..344982,345274..345288))
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="UTP binding site [chemical binding]; other site"
/db_xref="CDD:48377"
misc_feature complement(order(344737..344739,344839..344847,
344977..344979,345286..345288))
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="active site"
/db_xref="CDD:48377"
misc_feature complement(order(344980..344982,344986..344988,
345178..345183,345190..345192,345196..345198,
345274..345282,345286..345288))
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="Catalytic site [active]"
/db_xref="CDD:48377"
misc_feature complement(343816..344538)
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cytidine Triphosphate Synthetase; Region:
GATase1_CTP_Synthase; cd01746"
/db_xref="CDD:153217"
misc_feature complement(order(343864..343866,343870..343872,
343999..344010,344203..344205,344263..344265,
344272..344277,344350..344364))
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="active site"
/db_xref="CDD:153217"
misc_feature complement(order(344272..344274,344356..344358))
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="putative oxyanion hole; other site"
/db_xref="CDD:153217"
misc_feature complement(order(343864..343866,343870..343872,
344275..344277))
/gene="pyrG"
/locus_tag="hp2018_0350"
/note="catalytic triad [active]"
/db_xref="CDD:153217"
gene 345308..345442
/locus_tag="hp2018_0351"
/db_xref="GeneID:12371547"
CDS 345308..345442
/locus_tag="hp2018_0351"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791171.1"
/db_xref="GI:385231252"
/db_xref="GeneID:12371547"
/translation="MQCCKSVAIEEDEIPFPRELNTPPVTNINLALSISYCVPLIFTS
"
gene 345642..346304
/locus_tag="hp2018_0352"
/db_xref="GeneID:12371548"
CDS 345642..346304
/locus_tag="hp2018_0352"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791172.1"
/db_xref="GI:385231253"
/db_xref="GeneID:12371548"
/translation="MAENSFKNVSIQPKPFFLLPVKTLFLLGGVFSAFFILIAGLVFF
DYANSMDNAIFNLMRSNSSNPILDQTLQRIVFLGSSQFVLPLSLLVGVFLSLYRKNLA
LGVWFVLSVVIFEALLESLKHLLAHSIQWLSHSANFPSAIALSLTLFYGLLILLIPHF
IAHQIFQNILSYSLLGLILLIGLALIVLGVSFSSVLGGVCLGVLGACFSIGIYLSVFQ
KI"
misc_feature 345756..>346019
/locus_tag="hp2018_0352"
/note="PAP2_like proteins, a super-family of histidine
phosphatases and vanadium haloperoxidases, includes type 2
phosphatidic acid phosphatase or lipid phosphate
phosphatase (LPP), Glucose-6-phosphatase,
Phosphatidylglycerophosphatase B and bacterial acid...;
Region: PAP2_like; cl00474"
/db_xref="CDD:207066"
gene 346348..348051
/gene="fliF"
/locus_tag="hp2018_0353"
/db_xref="GeneID:12371549"
CDS 346348..348051
/gene="fliF"
/locus_tag="hp2018_0353"
/codon_start=1
/transl_table=11
/product="Flagellar M-ring protein"
/protein_id="YP_005791173.1"
/db_xref="GI:385231254"
/db_xref="GeneID:12371549"
/translation="MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPF
KEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLKDDTILVPKDKVYEERITL
ASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNEN
GESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFD
FSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPE
KYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSD
ESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATFSEKIMHKTQKILGSF
TPLIKYILVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGD
LRKKVEDQLGLNASFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK
G"
misc_feature 346348..348036
/gene="fliF"
/locus_tag="hp2018_0353"
/note="flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF); Region: fliF; TIGR00206"
/db_xref="CDD:129310"
misc_feature 346495..347019
/gene="fliF"
/locus_tag="hp2018_0353"
/note="Secretory protein of YscJ/FliF family; Region:
YscJ_FliF; pfam01514"
/db_xref="CDD:110511"
misc_feature 347116..347616
/gene="fliF"
/locus_tag="hp2018_0353"
/note="Flagellar M-ring protein C-terminal; Region:
YscJ_FliF_C; pfam08345"
/db_xref="CDD:192009"
gene 348065..349096
/gene="fliG"
/locus_tag="hp2018_0354"
/db_xref="GeneID:12371550"
CDS 348065..349096
/gene="fliG"
/locus_tag="hp2018_0354"
/codon_start=1
/transl_table=11
/product="Flagellar motor switch protein"
/protein_id="YP_005791174.1"
/db_xref="GI:385231255"
/db_xref="GeneID:12371550"
/translation="MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDID
SITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA
RKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSY
FPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRL
GQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIAKLDNFAIREILKVADKKDLSLALK
TSTQDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQ
TGEEEDVIE"
misc_feature 348098..349093
/gene="fliG"
/locus_tag="hp2018_0354"
/note="flagellar motor switch protein FliG; Region: fliG;
TIGR00207"
/db_xref="CDD:232874"
misc_feature 348743..349066
/gene="fliG"
/locus_tag="hp2018_0354"
/note="FliG C-terminal domain; Region: FliG_C; pfam01706"
/db_xref="CDD:190075"
gene 349089..349859
/gene="fliH"
/locus_tag="hp2018_0355"
/db_xref="GeneID:12371551"
CDS 349089..349859
/gene="fliH"
/locus_tag="hp2018_0355"
/codon_start=1
/transl_table=11
/product="Flagellar assembly protein"
/protein_id="YP_005791175.1"
/db_xref="GI:385231256"
/db_xref="GeneID:12371551"
/translation="MNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNSASLETPN
PQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKVLIENAKNDGYKIG
FKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKSSENHLMALEKELSAIAIDIAKE
VILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESN
EAISKGGVMITSSNGSLDGNLMERFKTLKESVLDNFKV"
misc_feature 349089..349856
/gene="fliH"
/locus_tag="hp2018_0355"
/note="flagellar assembly protein H; Validated; Region:
fliH; PRK06669"
/db_xref="CDD:180653"
misc_feature 349443..349826
/gene="fliH"
/locus_tag="hp2018_0355"
/note="Flagellar assembly protein FliH; Region: FliH;
pfam02108"
/db_xref="CDD:111047"
gene 349862..351712
/gene="dxs"
/locus_tag="hp2018_0356"
/db_xref="GeneID:12371552"
CDS 349862..351712
/gene="dxs"
/locus_tag="hp2018_0356"
/EC_number="2.2.1.7"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose-5-phosphate synthase"
/protein_id="YP_005791176.1"
/db_xref="GI:385231257"
/db_xref="GeneID:12371552"
/translation="MQNKTFDLNPNDIAGLELVCQTLRNRILEVVSANGGHLSSSLGA
VELIVGMHALFDCQKNPFIFDTSHQAYAHKLLTGRFESFSTLRQFKGLSGFTKPSESA
YDYFIAGHSSTSVSIGVGVAKAFRLKQTLGMPIALLGDGSISAGIFYEALNELGDRKY
PMIMILNDNEMSISTPIGALSKALSQLMKGSFYQSFRSKVKKILNTLPESVNYLASRF
EESFKLITPGVFFEELGINYIGPINGHDLGAIIETLKLAKELKEPVLIHAQTLKGKGY
KIAEGRYEKWHGVGPFDLDTGLSKKSKSAILSPTEAYSNTLLELAKKDEKIVGVTAAM
PSGTGLDKLIDAYPLRFFDVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIV
HDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVY
FANEHDSSPCAFRYPRGSFALKEGVFEPSGFVLGRSELLKKEGEILLIGYGNGVGRAH
LVQLALKEKNIDCALLDLRFLKPLDHNLSAIIAPYQKLYVFSDNYKLGGVASTILEFL
SEQNILKPVKSFEITDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER"
misc_feature 349862..351700
/gene="dxs"
/locus_tag="hp2018_0356"
/note="1-deoxy-D-xylulose-5-phosphate synthase; Region:
dxs; TIGR00204"
/db_xref="CDD:129308"
misc_feature 349964..350689
/gene="dxs"
/locus_tag="hp2018_0356"
/note="Thiamine pyrophosphate (TPP) family, DXS subfamily,
TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate
synthase (DXS) is a regulatory enzyme of the
mevalonate-independent pathway involved in terpenoid
biosynthesis. Terpeniods are plant natural products...;
Region: TPP_DXS; cd02007"
/db_xref="CDD:73294"
misc_feature order(350192..350194,350276..350287,350366..350368,
350372..350374)
/gene="dxs"
/locus_tag="hp2018_0356"
/note="TPP-binding site; other site"
/db_xref="CDD:73294"
misc_feature 350792..351259
/gene="dxs"
/locus_tag="hp2018_0356"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature order(350834..350836,350840..350842,350858..350860,
350909..350911,350918..350920,350924..350941,
350948..350953,350957..350965,351017..351019,
351026..351031,351104..351106,351113..351115,
351161..351166,351227..351229)
/gene="dxs"
/locus_tag="hp2018_0356"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(350858..350860,350918..350920,350927..350935,
351014..351019,351023..351025,351104..351106,
351110..351112,351137..351142,351146..351151,
351155..351157)
/gene="dxs"
/locus_tag="hp2018_0356"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(350927..350929,350933..350935,351008..351010,
351017..351019)
/gene="dxs"
/locus_tag="hp2018_0356"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature 351359..351673
/gene="dxs"
/locus_tag="hp2018_0356"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene 351727..353517
/gene="lepA"
/locus_tag="hp2018_0357"
/db_xref="GeneID:12371553"
CDS 351727..353517
/gene="lepA"
/locus_tag="hp2018_0357"
/codon_start=1
/transl_table=11
/product="Translation elongation factor"
/protein_id="YP_005791177.1"
/db_xref="GI:385231258"
/db_xref="GeneID:12371553"
/translation="MKNIRNFSIIAHIDHGKSTLADCLIAECNAISNREMTSQVMDTM
DIEKERGITIKAQSVRLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVD
ATQGVEAQTIANTYIALDNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEV
SAKAKLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINT
EQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTD
AKNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVAL
GFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLTDNSIKYVQNPSELPP
ENHIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNE
IVMDFYDKLKSCTKGYASFDYEPIENREAHLVKLDVRVAGDVVDALSIIIDKNKAYEK
GRALVETMKELIPRQLFEVAIQASVGNKIIARETIKSVGKNVTAKCYGGDITRKRKLL
EKQKEGKKRMKAIGKVELPQEAFLAILKID"
misc_feature 351727..353514
/gene="lepA"
/locus_tag="hp2018_0357"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:180078"
misc_feature 351739..352272
/gene="lepA"
/locus_tag="hp2018_0357"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature 351757..351780
/gene="lepA"
/locus_tag="hp2018_0357"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature order(351760..351762,351766..351768,351778..351783,
351790..351792,351799..351804,351895..351900,
351964..351969,352036..352041,352147..352149,
352159..352161)
/gene="lepA"
/locus_tag="hp2018_0357"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature order(351766..351783,352114..352119,352123..352125,
352207..352215)
/gene="lepA"
/locus_tag="hp2018_0357"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature 351862..351897
/gene="lepA"
/locus_tag="hp2018_0357"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature 351883..351885
/gene="lepA"
/locus_tag="hp2018_0357"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature 351952..351963
/gene="lepA"
/locus_tag="hp2018_0357"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature 351958..352014
/gene="lepA"
/locus_tag="hp2018_0357"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature 352114..352125
/gene="lepA"
/locus_tag="hp2018_0357"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature 352207..352215
/gene="lepA"
/locus_tag="hp2018_0357"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature 352294..352554
/gene="lepA"
/locus_tag="hp2018_0357"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:58090"
misc_feature 352927..353166
/gene="lepA"
/locus_tag="hp2018_0357"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:58062"
misc_feature 353188..353511
/gene="lepA"
/locus_tag="hp2018_0357"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene 353532..354290
/locus_tag="hp2018_0358"
/db_xref="GeneID:12371554"
CDS 353532..354290
/locus_tag="hp2018_0358"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791178.1"
/db_xref="GI:385231259"
/db_xref="GeneID:12371554"
/translation="MAKHKNYEILNLIGYALANFDNDFIKEFGFSTKNAFFEYCVQIG
LAETTGVIKNRMDLFDYFFPNKRKGWWQKGDAYIHRKLWIDSLFGNESVKGFSHIVKW
FLQEQYGIKDLGVTPNAYLKTRYKSMQETGLEAELYFLSHYKNIKTFSCGHLKDMRLF
GDGYDFYIQTNKQAFLVEVKGIREKQGTLRLTQKEYEQAQAYSHDYALVVVLNLSEKP
YLLSIANPLKHLEFKACERKQKSILEYHLIGQIK"
misc_feature 353934..354200
/locus_tag="hp2018_0358"
/note="Domain of unknown function (DUF3883); Region:
DUF3883; pfam13020"
/db_xref="CDD:205201"
gene 354293..354529
/locus_tag="hp2018_0359"
/db_xref="GeneID:12371555"
CDS 354293..354529
/locus_tag="hp2018_0359"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791179.1"
/db_xref="GI:385231260"
/db_xref="GeneID:12371555"
/translation="MNFTGGYRSGVQIDRNAPKRAYKYTKKDCDLILGIDTRTSECYI
IPIEDTQEWGNTKSLSQLQHYKENWQILIDLALE"
gene 354561..354710
/locus_tag="hp2018_0360"
/db_xref="GeneID:12371556"
CDS 354561..354710
/locus_tag="hp2018_0360"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791180.1"
/db_xref="GI:385231261"
/db_xref="GeneID:12371556"
/translation="MIIKKLDFNGAIKTLRELETIGTLPNHYRDGTNYSVSNLNGIRS
YHKRV"
gene complement(354856..355665)
/gene="flgG1"
/locus_tag="hp2018_0361"
/db_xref="GeneID:12371557"
CDS complement(354856..355665)
/gene="flgG1"
/locus_tag="hp2018_0361"
/codon_start=1
/transl_table=11
/product="Flagellar basal-body rod protein"
/protein_id="YP_005791181.1"
/db_xref="GI:385231262"
/db_xref="GeneID:12371557"
/translation="MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDF
LRLYQEYREQLPLEDQTKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALT
SPNLYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPNAEI
EVDQNGGITFRDNEAQIQAGALALVSFSEPKNLKKIGQNLYTYQGEGIHQVSDSGALR
QSMLEKSNVNAVREMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLATKA"
misc_feature complement(354868..355665)
/gene="flgG1"
/locus_tag="hp2018_0361"
/note="Flagellar basal body rod protein [Cell motility and
secretion]; Region: FlgG; COG4786"
/db_xref="CDD:227125"
misc_feature complement(354943..355212)
/gene="flgG1"
/locus_tag="hp2018_0361"
/note="flagellar basal-body rod protein FlgF; Region:
flgF; TIGR02490"
/db_xref="CDD:233892"
gene complement(355722..357008)
/gene="kgtP"
/locus_tag="hp2018_0362"
/db_xref="GeneID:12371558"
CDS complement(355722..357008)
/gene="kgtP"
/locus_tag="hp2018_0362"
/codon_start=1
/transl_table=11
/product="Alpha-ketoglutarate permease"
/protein_id="YP_005791182.1"
/db_xref="GI:385231263"
/db_xref="GeneID:12371558"
/translation="MNPQIQPTTKKPLKSLLAASSGNLVEWYDFYAYAFLAPYFAKEF
THTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMALGSFML
ALLPTKEIVGEWAFLFLLLARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVT
LVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIMEETMDSKT
TSKTTIKEETQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSP
KESSFIMLLALSYFIFLQPLCGMLADKIKRTQMLMVFAITGLIVTPIVFYGIKHATSV
YEALFYEILALSSMSFYTCIAGVIKAELFPEHVRALGVGLAYAIANALFGGSASYVAL
QFKQHGFEAGFVGYVMVSIVIFMVMVITFPKKTYLE"
misc_feature complement(355791..356999)
/gene="kgtP"
/locus_tag="hp2018_0362"
/note="alpha-ketoglutarate transporter; Provisional;
Region: PRK10406"
/db_xref="CDD:182433"
misc_feature complement(<356505..356834)
/gene="kgtP"
/locus_tag="hp2018_0362"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(355797..>356288)
/gene="kgtP"
/locus_tag="hp2018_0362"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(357396..359936)
/gene="ftsK2"
/locus_tag="hp2018_0363"
/db_xref="GeneID:12371559"
CDS complement(357396..359936)
/gene="ftsK2"
/locus_tag="hp2018_0363"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="YP_005791183.1"
/db_xref="GI:385231264"
/db_xref="GeneID:12371559"
/translation="MKSKKLYLALIIGVLLAFLTLSSWLGNSGLVGRFGVWFAAINKK
YFGYLSFINLPYLAWVLFLLYKTKNPFTEIVLEKTLGHLLGILSLLFLQSSLLNQGEI
GNSARLFLRPFIGDFGLYALIILMLVISYLILFKLPPKSVFYPYMNKTQSLLKEIYKQ
CLQAFSPNFSLKKESFENTSSDSQKKETNNPKEKENLKENPIDESHKPPNEESFLAIP
TPYNTTLNDSEPQEGLVQISPHPPTHYTIYPKKNRFNDLTNPTNPTLEPQQETKEREP
TLKKETPTTLKPIMPISAPNTENDNKTENHKTPNHPIKKDDLQENAQEENIEEKENLK
EEKRETQNAPNFSPLTPTSAKKPVMVKELSENKEILDGLDYGEVQKPKDYELPTTQLL
NAVCLKETSLDENEIDQKIQDLLSKLRTFKIDGDIIRTYSGPIVTTFEFRPAPSVKVS
RILGLSDDLAMTLCAESIRIQAPIKGKDVVGIEIPNSQSQIIYLREILESELFQKSSS
PLTLALGKDIVGNPFITDLKKLPHLLIAGTTGSGKSVGVNAMILSLLYKNPPDQLKLV
MIDPKMVEFSIYADIPHLLTPIITDPKKAIGALQSVAKEMERRYSLMSEYKVKTIDSY
NEQAKNNGVEAFPYLIVVVDELADLMMTGGKEAEFPIARIAQMGRASGLHLIVATQRP
SVDVVTGLIKTNLPSRVSFRVGTKIDSKVILDTDGAQSLLGRGDMLFTPPGTNGLVRL
HAPFATEDEIKKIVDFIKAQKEVEYDKDFLLEESRMPLDTPNYQGDDILERAKAVILE
KKITSTSFLQRQLKIGYNQAATITDELEAQGFLSPRNAKGNREILQNF"
misc_feature complement(357399..359936)
/gene="ftsK2"
/locus_tag="hp2018_0363"
/note="DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning];
Region: FtsK; COG1674"
/db_xref="CDD:31860"
misc_feature complement(359742..>359927)
/gene="ftsK2"
/locus_tag="hp2018_0363"
/note="TspO/MBR family; Region: TspO_MBR; cl01379"
/db_xref="CDD:207391"
misc_feature complement(357885..358460)
/gene="ftsK2"
/locus_tag="hp2018_0363"
/note="FtsK/SpoIIIE family; Region: FtsK_SpoIIIE;
pfam01580"
/db_xref="CDD:190044"
misc_feature complement(357408..357596)
/gene="ftsK2"
/locus_tag="hp2018_0363"
/note="Ftsk gamma domain; Region: Ftsk_gamma; pfam09397"
/db_xref="CDD:204229"
gene complement(359933..362269)
/locus_tag="hp2018_0364"
/db_xref="GeneID:12371560"
CDS complement(359933..362269)
/locus_tag="hp2018_0364"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791184.1"
/db_xref="GI:385231265"
/db_xref="GeneID:12371560"
/translation="MNLEKLFLEKSPLFVFSSTRRLKHFYLEQGEGFLPSAMSMGSFF
EQAFYIPNQKKIPKSARQILMIDTIKAIAKEKKSALEGLLLFENSFLGYLESTSFLFD
LFDELSSACIKLNELSFKDIYLDYEKHLEVLEMIYDRYVKKLEELGFYDKIMQKKPTI
LKEFFEHFSSIEWHLDGFMSVFERQCLLEVAELVPITLHLSCDKYNQKFLEFLNLKLE
TDCDYSIDFKTQKILSQTFNDQKIEPKLYANSSYLKQGALVLQTIEEYLQKDNDPNKM
AIITPNADFLPFLKLLDKNNNLNFAMGLGAKNSPYYTELVKILEDLQTSDCDLSGSAL
LDLENITLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLKNYSLKDLLHLYLQEFEA
NFRLDDSSGGKIRVMDTLETRGMQFDKIVVADFNETCVPSLKDCDLFLNSALRKSLNL
PTLLDKKNLQKHYYYQLFKNSKEVALSYIESETLKASNMLLELDLHIEPIKDAYTLFE
TSPLKDYQEEEIKAAIPKNFSFSASSLNAFLTCKRRFYYHYMKRFKETPKDESNSAVG
SLLHELLKEAYEKDKTPHALEERLIQLLETRENVTLKERLDTLVALKKIQAFYLKEKE
RFNAEITILDLEKSFETIIQGVIFKGHIDRIDKTTDNKIILLDYKFKSDLKLDNMSKT
QRGGLSPIEIAQISTDYQMAIYAFALKNLGYKEPIKAFFYDLRKGELLEEDELILQAK
MDHLEFSLIPKLKQEIDFEKTLEVKDCEYCSFKDMCNR"
misc_feature complement(360695..362269)
/locus_tag="hp2018_0364"
/note="Inactivated superfamily I helicase [DNA
replication, recombination, and repair]; Region: COG3893"
/db_xref="CDD:33681"
misc_feature complement(359936..360715)
/locus_tag="hp2018_0364"
/note="RecB family exonuclease [DNA replication,
recombination, and repair]; Region: COG2887"
/db_xref="CDD:32713"
gene complement(362266..364191)
/gene="tktA"
/locus_tag="hp2018_0365"
/db_xref="GeneID:12371561"
CDS complement(362266..364191)
/gene="tktA"
/locus_tag="hp2018_0365"
/EC_number="2.2.1.1"
/codon_start=1
/transl_table=11
/product="transketolase"
/protein_id="YP_005791185.1"
/db_xref="GI:385231266"
/db_xref="GeneID:12371561"
/translation="MQLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVM
VVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSLLHLWGFDLSLDDLKRFRQLHSK
TPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQTLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLRLDNLIVIYDSNQISIEGAINISFSEQVKTRFLAQNWEVLEC
DGHDYQAIHNALEEAKKSHKPTLLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKE
NAQINPNESFIISPKNKMHFEEVRVRGVSLEALWEKSLSPKTKEKIHALKNFDFNTIN
YPAFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTHLKHSGDFPLGQNLH
FGIREHAMGAITNALAAYGLFLPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSI
GVGEDGATHQPIEQLSHLRALPHFYAFRPSDALENKACMQVALSLNAPSALILSRQNL
PVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAKILERENIPTQVVSVP
CFDLLIEQDESYFKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKF
GFSVENVTAQAKRLLNA"
misc_feature complement(362275..364158)
/gene="tktA"
/locus_tag="hp2018_0365"
/note="transketolase, bacterial and yeast; Region:
tktlase_bact; TIGR00232"
/db_xref="CDD:161779"
misc_feature complement(363367..364146)
/gene="tktA"
/locus_tag="hp2018_0365"
/note="Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK provides
a link between glycolysis and the...; Region: TPP_TK;
cd02012"
/db_xref="CDD:48175"
misc_feature complement(order(363406..363408,363616..363618,
363622..363624,363628..363630,363703..363705,
363715..363720,363826..363828,363832..363834,
363976..363978))
/gene="tktA"
/locus_tag="hp2018_0365"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48175"
misc_feature complement(order(363571..363573,363616..363621,
363667..363669,363679..363681,363688..363693,
363700..363711,363820..363822,363826..363831,
363868..363870,363874..363879,363901..363903))
/gene="tktA"
/locus_tag="hp2018_0365"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48175"
misc_feature complement(362677..363141)
/gene="tktA"
/locus_tag="hp2018_0365"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature complement(order(362704..362706,362767..362772,
362818..362820,362827..362829,362902..362907,
362914..362916,362971..362979,362983..362988,
362995..363012,363016..363018,363025..363027,
363082..363084,363100..363102,363106..363108))
/gene="tktA"
/locus_tag="hp2018_0365"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(362776..362778,362782..362787,
362791..362796,362821..362823,362827..362829,
362908..362910,362914..362919,363001..363009,
363016..363018,363082..363084))
/gene="tktA"
/locus_tag="hp2018_0365"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(362914..362916,362923..362925,
363001..363003,363007..363009))
/gene="tktA"
/locus_tag="hp2018_0365"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(<362419..362625)
/gene="tktA"
/locus_tag="hp2018_0365"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene complement(364238..365080)
/gene="ribF"
/locus_tag="hp2018_0366"
/db_xref="GeneID:12371562"
CDS complement(364238..365080)
/gene="ribF"
/locus_tag="hp2018_0366"
/EC_number="2.7.1.26"
/EC_number="2.7.7.2"
/codon_start=1
/transl_table=11
/product="Riboflavin kinase / FMN adenylyltransferase"
/protein_id="YP_005791186.1"
/db_xref="GI:385231267"
/db_xref="GeneID:12371562"
/translation="MLNFLSISSEPEIKSLAIGKFDGLHLGHQALFKELKDPKALLII
EKKHYTKGYLTPLKYRAKLVKMPLFFVYLEEISQLNALEFLELLKKKFPNLERLVVGY
DFRFGHERQNDALFLKERFEKTIIVPEVKIQNISVHSKIIKLALSHGDLSLANKLLGR
YYEVCGEVISDQGLGHKELAPTLNIKTKDFILPSFGVYASLVKIKDQIYQKSVSFIGN
RLSTDQHFAIECHVLDTIIENPPKEIALRWVQKIRDNMRFSSLKELKNQIQQDILMAK
EILR"
misc_feature complement(364571..365041)
/gene="ribF"
/locus_tag="hp2018_0366"
/note="FAD synthetase, N-terminal domain of the
bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
/db_xref="CDD:185679"
misc_feature complement(364241..365038)
/gene="ribF"
/locus_tag="hp2018_0366"
/note="riboflavin kinase/FMN adenylyltransferase; Region:
ribF; TIGR00083"
/db_xref="CDD:161699"
misc_feature complement(order(364664..364672,364694..364696,
364772..364774,364997..364999,365006..365008,
365015..365026))
/gene="ribF"
/locus_tag="hp2018_0366"
/note="active site"
/db_xref="CDD:185679"
misc_feature complement(364241..364612)
/gene="ribF"
/locus_tag="hp2018_0366"
/note="Riboflavin kinase; Region: Flavokinase; pfam01687"
/db_xref="CDD:190069"
gene complement(365046..365753)
/locus_tag="hp2018_0367"
/db_xref="GeneID:12371563"
CDS complement(365046..365753)
/locus_tag="hp2018_0367"
/codon_start=1
/transl_table=11
/product="RNA binding methyltransferase"
/protein_id="YP_005791187.1"
/db_xref="GI:385231268"
/db_xref="GeneID:12371563"
/translation="MRLDYALFNQHLANSREKAKALVLKKQVLVNKMVVSKPSFIVKE
GDQIELIAPNLFVSRAGEKLGAFLEDHFIDFKEKVVLDVGASKGGFSQVALLKGAKKV
LCVDVGKMQLDEGLKNDQRIECYEECDIRGFKTPEKIDLALCDVSFISLYCILEAILP
LSGEFLVLFKPQFEVGRTIKRNKKGVVMDKEAILNALENFKNHLKAKDFQILTIQESL
VKGKNGNVEFFIHFKRA"
misc_feature complement(365604..365753)
/locus_tag="hp2018_0367"
/note="S4 RNA-binding domain; Region: S4; smart00363"
/db_xref="CDD:197683"
misc_feature complement(365073..365750)
/locus_tag="hp2018_0367"
/note="hemolysin TlyA family protein; Region: tly;
TIGR00478"
/db_xref="CDD:129570"
misc_feature complement(order(365625..365627,365631..365654,
365673..365675,365679..365684,365691..365696,
365700..365705,365709..365714,365748..365750))
/locus_tag="hp2018_0367"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature complement(<365301..365516)
/locus_tag="hp2018_0367"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(365319..365321,365364..365372,
365433..365438,365487..365507))
/locus_tag="hp2018_0367"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(365753..366268)
/locus_tag="hp2018_0368"
/db_xref="GeneID:12371564"
CDS complement(365753..366268)
/locus_tag="hp2018_0368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791188.1"
/db_xref="GI:385231269"
/db_xref="GeneID:12371564"
/translation="MGLKNLSILLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKG
EITQDNVPIITAIATHLNDVDSGTYYDHEYFLVEIFTQNNDWIDDSYISYELFGTKPM
GSEPLWVREITKDEFDGILETTNRWSRAFLLAFDKLDYLAVQEAKLELDAYSLGKIVF
NFAYQVPLPQF"
gene 366335..367258
/gene="pyrB"
/locus_tag="hp2018_0369"
/db_xref="GeneID:12371565"
CDS 366335..367258
/gene="pyrB"
/locus_tag="hp2018_0369"
/EC_number="2.1.3.2"
/codon_start=1
/transl_table=11
/product="aspartate carbamoyltransferase"
/protein_id="YP_005791189.1"
/db_xref="GI:385231270"
/db_xref="GeneID:12371565"
/translation="MPKKCRHLLQTSDLSLDEIKLLLNKASVYANDFNAVSLETREKM
QDKIIVALFFENSTRTVSSFEIASLRLGAKIVKLNMQTSSTSKGETLIDTFKNIHAMQ
PDAIITRHAFSSAPFKLAEFSQCPLINAGSGTSAHPTQALLDLLTLYRHFGSLENLKG
KKIAFIGDVKNSRVANSNIKLLQRLGLEIMLCAPSSMLPITPLKTTHNVEEAIGFADI
LMSLRTQTERHNVPIFASLKDYGNAYCITQKRLDDHAKNKEVIILHPGPVHRDIDIES
TVLEDKRSKVLEQVKNGVAMRMAVLEFLLIN"
misc_feature 366335..367249
/gene="pyrB"
/locus_tag="hp2018_0369"
/note="aspartate carbamoyltransferase catalytic subunit;
Provisional; Region: pyrB; PRK00856"
/db_xref="CDD:179144"
misc_feature 366350..366787
/gene="pyrB"
/locus_tag="hp2018_0369"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:202362"
misc_feature 366809..367246
/gene="pyrB"
/locus_tag="hp2018_0369"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:201065"
gene 367551..368990
/locus_tag="hp2018_0370"
/db_xref="GeneID:12371566"
CDS 367551..368990
/locus_tag="hp2018_0370"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_005791190.1"
/db_xref="GI:385231271"
/db_xref="GeneID:12371566"
/translation="MKNSVPLKNKVFCGLYVLSLNASVQAFDYKIEVLAESFSKVGFN
KKKIDIARGIYPTETFVTAVGQGNIYADFLSKSLKDQGHVLEGKVGGTIGGIAYDSTK
FNQGGSVIYNYIGYWDGYLGGKRALLDGTSIHECALGPDGKVIDSIACGNARANKIRR
NYLMNNAFLEYRYKDIFTAKGGRYQSSAPYMSSYTQGFEISAKVKDKNEGSHKLWWFS
SWGRAFAYGEWIYDFYSPRTVIKNGRTLNYGIHLVDYTYEKKGVSVSPFFQFSPGTYY
SPGVAVGYDSNPNFNGVGFRSETKAYILLPVHAPLKRDTYRYAVKAGTAGQSLLIRQR
FDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDFWTNSVYDIGQALSHLVTADAVSGW
VFGGGVHKKWLWGTLWRWTSGALANEASAAVNVGYKISKSLTASVKLEYLGVMTHSGF
TVGSYRPTPGSKALYSDRSHLMTTLSAKF"
misc_feature 367569..368987
/locus_tag="hp2018_0370"
/note="Putative outer membrane protein; Region: HP_OMP_2;
pfam02521"
/db_xref="CDD:145585"
gene 369081..370736
/gene="msbA"
/locus_tag="hp2018_0371"
/db_xref="GeneID:12371567"
CDS 369081..370736
/gene="msbA"
/locus_tag="hp2018_0371"
/codon_start=1
/transl_table=11
/product="multi drug resistance protein"
/protein_id="YP_005791191.1"
/db_xref="GI:385231272"
/db_xref="GeneID:12371567"
/translation="MKLFFRRYSKYLKEHYKSFIVVLFSSLVVALSTAWGTYLVKPTL
DEIFINKDTHMLKILPFLVILAYLGKSGGIYLGTYFTNFIGLDIVKKIRNAMLESLLK
MEMDFFNRTKKGELIARITNDIGLIRASLSNYLSESLREGLTIVGLVGVVIYQSPKLA
LVGLVIMPLAAIPISKIIRKVKKLAKAHQESNAKITARLSEVFNNVEAIKISNGEKLE
HKAFVKENEAFFKIGIRNIAVAEISSPLMEFLGSIAIALVIYLGGNEVIKGHISVGAF
FSFITALFMLYTPIKRLTRIVSNFQEALVASDRIHEILEREPAIIDGELTLDNAIHTI
EFKKVWLAYVLDNQERYVLSDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKG
EIFINDQKIESITQKSLREKISVVTQRVFIFNGSVAENVAYGLEIDEIKIKECLKKAQ
ALDFVEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDAQVLIFDEATSALDNHTE
ESVKQSILELKQNRLIILISHNPSTLKLATKHVKLEHGRLIEC"
misc_feature 369177..370730
/gene="msbA"
/locus_tag="hp2018_0371"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature 369252..369950
/gene="msbA"
/locus_tag="hp2018_0371"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature 370080..370730
/gene="msbA"
/locus_tag="hp2018_0371"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 370188..370211
/gene="msbA"
/locus_tag="hp2018_0371"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(370197..370202,370206..370214,370332..370334,
370569..370574,370665..370667)
/gene="msbA"
/locus_tag="hp2018_0371"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 370323..370334
/gene="msbA"
/locus_tag="hp2018_0371"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 370497..370526
/gene="msbA"
/locus_tag="hp2018_0371"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 370557..370574
/gene="msbA"
/locus_tag="hp2018_0371"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 370581..370592
/gene="msbA"
/locus_tag="hp2018_0371"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 370653..370673
/gene="msbA"
/locus_tag="hp2018_0371"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 370730..371353
/locus_tag="hp2018_0372"
/db_xref="GeneID:12371568"
CDS 370730..371353
/locus_tag="hp2018_0372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791192.1"
/db_xref="GI:385231273"
/db_xref="GeneID:12371568"
/translation="MLRVLSVGVAFILLGCQFFNKTTLHLKYKDYPKNSPLKTASTLT
PPKIFFNAHFVPPFYQKEFKKAIAQQIAYFLKDKSTFIFNVSGNVFFSFEESPKDLKA
IKERLKKTIEPNTDPKAVMRFLNLQASLILECVPQTACPFDTLLIPTALSVPIDYANR
LGDNPSLFPQEDKSYHNALIKALNKAYYSLMEGLEKRLNAIENAAWL"
misc_feature <370802..371323
/locus_tag="hp2018_0372"
/note="Neuraminyllactose-binding hemagglutinin precursor
(NLBH); Region: NLBH; pfam05211"
/db_xref="CDD:218500"
gene 371357..371926
/locus_tag="hp2018_0373"
/db_xref="GeneID:12371569"
CDS 371357..371926
/locus_tag="hp2018_0373"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791193.1"
/db_xref="GI:385231274"
/db_xref="GeneID:12371569"
/translation="MKKILFFIFVVLFSVGIYLTWNVLLEKALELKLVTSANDLLLKL
FALLGVFSILVLFQGVISSYKERQLKRILQKIDAMNGFEFEEYSKIFFTSKGFAVTIT
QKSGDYGADLIIEKDGVKWAVQAKRYSHKVSPKAIQEVVSSKAYYACEKACVITNSYF
TQAAQKLAQANEVILIDRDEWVKFLGGKN"
misc_feature 371396..371923
/locus_tag="hp2018_0373"
/note="Predicted endonuclease distantly related to
archaeal Holliday junction resolvase and Mrr-like
restriction enzymes [Defense mechanisms]; Region: COG1787"
/db_xref="CDD:31973"
misc_feature 371582..371911
/locus_tag="hp2018_0373"
/note="Restriction endonuclease; Region: Mrr_cat;
pfam04471"
/db_xref="CDD:203024"
gene 372059..372472
/locus_tag="hp2018_03741"
/db_xref="GeneID:12371570"
CDS 372059..372472
/locus_tag="hp2018_03741"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791194.1"
/db_xref="GI:385231275"
/db_xref="GeneID:12371570"
/translation="MIQSVRIKNFKTFKDTQIDGFTKLNIITGQNNAGKSNLLEALYY
LVGKSMHPCTNVLEIYDNIRKEPLTLESKSLMFYGLDTEKKIQITTTLDNNQTLDLQI
KFIANEKQKVIELQIIPTVEHAQEFSRLNFTLKKK"
misc_feature 372059..>372466
/locus_tag="hp2018_03741"
/note="Predicted ATPases [General function prediction
only]; Region: COG1106"
/db_xref="CDD:31303"
misc_feature 372062..>372205
/locus_tag="hp2018_03741"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 372143..372166
/locus_tag="hp2018_03741"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(372152..372157,372161..372169)
/locus_tag="hp2018_03741"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
gene 372651..373172
/locus_tag="hp2018_03742"
/db_xref="GeneID:12371571"
CDS 372651..373172
/locus_tag="hp2018_03742"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791195.1"
/db_xref="GI:385231276"
/db_xref="GeneID:12371571"
/translation="MIQAVSKICSNNQLEEELNKHLNQFDNNIQSISFNTNNQLKLKV
KNIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRMKLLLRCVIDF
INDNKDGNLQVFMTTHNQEFIEILDQVIREKDFAHQTKLFCLEQYNGSIVAEPYYGEN
LEYYFENEENLFG"
misc_feature <372651..373115
/locus_tag="hp2018_03742"
/note="Predicted ATPases [General function prediction
only]; Region: COG1106"
/db_xref="CDD:31303"
misc_feature <372879..373043
/locus_tag="hp2018_03742"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature 372879..372896
/locus_tag="hp2018_03742"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 372903..372914
/locus_tag="hp2018_03742"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 372990..373010
/locus_tag="hp2018_03742"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 373201..373836
/locus_tag="hp2018_0375"
/db_xref="GeneID:12371572"
CDS 373201..373836
/locus_tag="hp2018_0375"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791196.1"
/db_xref="GI:385231277"
/db_xref="GeneID:12371572"
/translation="MADKEILIFVGGPSDKVFLEVYLYFLEDLPIKNFKVQNIKGKDN
LSKRLLEIEKYDKTLIIFDADNYKSNKKEILTVVSKTKQTISEEQIFLFPNNQDDGDL
ETLLLKIAKHDEFLKCFEGYLECIKSKEHYKPIKNIRKNMLYAYLEALGLENLTKTNI
DVFDSKGKIKEKYKEEYEKLKEVVDFNSNSLIPLKDFLGQFAENKQKTNLF"
gene 373893..374888
/gene="nixA"
/locus_tag="hp2018_0376"
/db_xref="GeneID:12371573"
CDS 373893..374888
/gene="nixA"
/locus_tag="hp2018_0376"
/codon_start=1
/transl_table=11
/product="high affinity nickel transport protein"
/protein_id="YP_005791197.1"
/db_xref="GI:385231278"
/db_xref="GeneID:12371573"
/translation="MKLWFPYFLAIVFLHALGLALLFMANNASFYAAASMAYMLGAKH
AFDADHIACIDNTIRKLTQQGKNAYGVGFYFSMGHSSVVILMTIISAFAIAWAKEHTP
MLEEIGGVVGTLVSGLFLLIIGLLNAIILIDLLKIFKKSHSNESLSRQQNEEIERLLT
SRGLLNRFFKPLFNFVSKSWHIYPVGFLFGLGFDTASEIALLALSSSAIKVSVVGMLS
LPILFAAGMSLFDTLDGAFMLKAYDWAFKTPLRKIYYNISITALSVFIALFIGLIELF
QVVSEKLHLKFENRLLSTLQSLEFTDLGYYLVGLFVIAFLGSFFLWKIKFSKLES"
misc_feature 374007..374837
/gene="nixA"
/locus_tag="hp2018_0376"
/note="high-affinity nickel-transporter, HoxN/HupN/NixA
family; Region: nico; TIGR00802"
/db_xref="CDD:162047"
gene complement(374892..375413)
/locus_tag="hp2018_0377"
/db_xref="GeneID:12371574"
CDS complement(374892..375413)
/locus_tag="hp2018_0377"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791198.1"
/db_xref="GI:385231279"
/db_xref="GeneID:12371574"
/translation="MDILKTLQKHLGGVETSDFKTNAIEKSQQIAKFSRDMKNINESV
GALQVLQIACKKLLNKSMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAI
NDEVFSMIVDNPLDLLENVSGFQAYLEEKLNEIKELLGYLSESLSNPKAFMPKQSFSN
KSLKDLLSDDLRA"
gene 375549..376865
/locus_tag="hp2018_0378"
/db_xref="GeneID:12371575"
CDS 375549..376865
/locus_tag="hp2018_0378"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791199.1"
/db_xref="GI:385231280"
/db_xref="GeneID:12371575"
/translation="MKKIWLLVWGLYSWVFLHAIETIEKAPTNVEDRDKAPHLLLLAG
IQGDEPGGFNATNLFLMHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKN
DPEYPTIQEIKSLIAKPSVDAVLHLHDGGGYYRPIYVDAMLNPKRWGNCFIIDQDEVK
GAKFPNLLAFANNTIENINAHLLHPIEKYHLKNTRTAQGDTEMQKALTFYAINQKKSA
FANEASKELPLESRVFYHLQAIEGLLNQLNIPFKRDFELNPNSVHALINDKSLWAKIS
SLPKMPLFNLRPKLNHFPLPSNTKIPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRL
SPFYIEFDHSLEEVKMQIDNKDQMVKIGSVVEVKESFYIHAMDNIRANVIGFSVSNES
KPNEAGYTIRFKDFQKRFSLDKQERIYRIEFYKNNAFSGMILVKFV"
misc_feature 375663..376280
/locus_tag="hp2018_0378"
/note="M14 family of metallocarboxypeptidases and related
proteins; Region: Peptidase_M14_like; cd00596"
/db_xref="CDD:199839"
misc_feature order(375684..375686,375693..375695,375825..375830,
375930..375935,375948..375950,376212..376214)
/locus_tag="hp2018_0378"
/note="active site"
/db_xref="CDD:199839"
misc_feature order(375684..375686,375693..375695,375930..375932)
/locus_tag="hp2018_0378"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:199839"
gene complement(376889..377059)
/locus_tag="hp2018_03791"
/db_xref="GeneID:12371576"
CDS complement(376889..377059)
/locus_tag="hp2018_03791"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791200.1"
/db_xref="GI:385231281"
/db_xref="GeneID:12371576"
/translation="MLDDKIYTTTLYYQKPLFDLIKNSNFNLTIKDNTLEINQAKNAY
SFKAKNTKTLEY"
gene complement(377196..377705)
/locus_tag="hp2018_03792"
/db_xref="GeneID:12371577"
CDS complement(377196..377705)
/locus_tag="hp2018_03792"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791201.1"
/db_xref="GI:385231282"
/db_xref="GeneID:12371577"
/translation="MAIKEKEIELETLKREIAQAEASLEQDFIKHMVDKTSEKVEDLF
FSNKPEFYRFVFTEQNNYLREKLTDKVGRAMDLSDEIQRDKTENESLENGAKFKKRFV
FELQNDLIFLRTTRNTYSAKTEHENFQERLLAAKDTFRLIKANDFKTKIYPYQIILRL
KTKHIIVFR"
gene 377736..377897
/locus_tag="hp2018_0380"
/db_xref="GeneID:12371578"
CDS 377736..377897
/locus_tag="hp2018_0380"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791202.1"
/db_xref="GI:385231283"
/db_xref="GeneID:12371578"
/translation="MILDYECYYLKLLRFSSGCKNTQTNPSVKRQQPFCMLRYLDYFY
TKPLLTLIR"
gene complement(377921..378121)
/gene="copP"
/locus_tag="hp2018_0381"
/db_xref="GeneID:12371579"
CDS complement(377921..378121)
/gene="copP"
/locus_tag="hp2018_0381"
/codon_start=1
/transl_table=11
/product="Copper associated protein"
/protein_id="YP_005791203.1"
/db_xref="GI:385231284"
/db_xref="GeneID:12371579"
/translation="MKVTFQVPSITCSHCVDKIEKFVGEIEGVSFIDASVEKKSVVVE
FDAPATQDLIKEALLDAGQEVV"
misc_feature complement(377927..378112)
/gene="copP"
/locus_tag="hp2018_0381"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature complement(order(378077..378079,378086..378094))
/gene="copP"
/locus_tag="hp2018_0381"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
gene complement(378122..380347)
/locus_tag="hp2018_0382"
/db_xref="GeneID:12371580"
CDS complement(378122..380347)
/locus_tag="hp2018_0382"
/EC_number="3.6.3.4"
/EC_number="3.6.3.3"
/codon_start=1
/transl_table=11
/product="Lead/cadmium/zinc and mercury transporting
ATPase /Copper-translocating P-type ATPase"
/protein_id="YP_005791204.1"
/db_xref="GI:385231285"
/db_xref="GeneID:12371580"
/translation="MKESFYIEGMTCTACSSGIERSLGRKSFVKKIEVSLLNKSANIE
FNENETNLDEIFKLIEKLGYSPKKTLAEEKKEFFSPNVKLALAVIFTLFVVYLSMGAM
LSPSLLPESLLTINNHSNFLNACLQLIGTLIVMHWGRDFYIQGFKALWHRQPNMSSLI
AIGTSAALASSLWQLYFVYTNQWSYGHYYFESVCVILTFVMVGKRIENISKDKALDAM
QALMKNAPKTALKMQNNQQIEVLVDSIVVGDILKVLPGSAIAVDGEIIEGEGELDESM
LSGEALPVYKKVGDKVFSGTLNSNTSFLMKATQDNKNSTLSQIIEMIHNAQSSKAEIS
RLADKVSSVFVPSVIAIAILAFVVWLIIAPKPDFWWNFGIALEVFVSVLVISCPCALG
LATPMSILVANQKASSLGLFFKDAKSLEKARLVNTIVFDKTGTLTNGKPVVKSVHSNI
ELLELLSLASSIEKSSEHVIAKGIVEYAKEHDAPLKEISEVKVKTGFGISAKVDYQGA
KEIIKVGNSEFFNPINTLEIQENGILVFVGRAINEKEDELLGAFVLEDLPKKGVKEHV
AQIKNLGINTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKELKEKGRIVMM
VGDGLNDAPSLAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIK
ENLFWAFCYNSVFIPLACGVLYKANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFKIKD
H"
misc_feature complement(380147..380338)
/locus_tag="hp2018_0382"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature complement(order(380303..380305,380312..380320))
/locus_tag="hp2018_0382"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature complement(378203..379939)
/locus_tag="hp2018_0382"
/note="copper-(or silver)-translocating P-type ATPase;
Region: ATPase-IB1_Cu; TIGR01511"
/db_xref="CDD:188148"
misc_feature complement(379085..379765)
/locus_tag="hp2018_0382"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature complement(378374..>378670)
/locus_tag="hp2018_0382"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
gene complement(380344..381057)
/locus_tag="hp2018_0383"
/db_xref="GeneID:12371581"
CDS complement(380344..381057)
/locus_tag="hp2018_0383"
/EC_number="2.7.8.8"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--serine
O-phosphatidyltransferase"
/protein_id="YP_005791205.1"
/db_xref="GI:385231286"
/db_xref="GeneID:12371581"
/translation="MPINPLYLFPNLFTASSIFLGMMSIFYASSYQFVMACWLVVASL
ILDGLDGRVARLTNTTSKFGIEFDSLADVVAFGVAPSLITYFYVGYNFGRIGMAVSAL
FVIFGAIRLARFNISTNTSDPYSFIGIPIPAAAVLVVLCVLLDNKYHFLEGNTEKLFL
GFIVLLGVLMVSNIRYPNFKKVKWNLKLFILVLIFLSLVFVRPLEALSVFMGLYLIYG
IIRWLFLMVKIIFNKNKSA"
misc_feature complement(380383..381042)
/locus_tag="hp2018_0383"
/note="Phosphatidylserine synthase [Lipid metabolism];
Region: PssA; COG1183"
/db_xref="CDD:224104"
misc_feature complement(380797..381042)
/locus_tag="hp2018_0383"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; pfam01066"
/db_xref="CDD:216278"
gene complement(381047..381307)
/locus_tag="hp2018_0384"
/db_xref="GeneID:12371582"
CDS complement(381047..381307)
/locus_tag="hp2018_0384"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791206.1"
/db_xref="GI:385231287"
/db_xref="GeneID:12371582"
/translation="MRSCKQIFDKGLKPYYKHSVCLKPFFKFCFLKTHAYQQRYRAFA
LTLFSCKFFNACKIFIPIIDFKIIFIPILKHQAKLQRISNAY"
gene complement(381310..383208)
/gene="ftsH2"
/locus_tag="hp2018_0385"
/db_xref="GeneID:12371583"
CDS complement(381310..383208)
/gene="ftsH2"
/locus_tag="hp2018_0385"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="YP_005791207.1"
/db_xref="GI:385231288"
/db_xref="GeneID:12371583"
/translation="MKPTNEPKKPFFQSPIILAVLGGILLIFFLRSFNSDGSFSDDFL
ASSTKNVSYHEIKQLISNNEVENVSIGQTLIKASHKEGNNRVIYIAKRVPDLTLVPLL
DEKRINYSGFSESNFFTDMLGWLMPILVILGLWMFMANRMQKNMGGGIFGMGSAKKLI
NAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTL
LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK
SRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFD
RQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLA
GRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSAR
VNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEEVFLEEISTGA
SNDLERATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLF
IKNLLEERYEHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEAANNLESRL
IPLEEQAS"
misc_feature complement(381373..382860)
/gene="ftsH2"
/locus_tag="hp2018_0385"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:162266"
misc_feature complement(382186..382692)
/gene="ftsH2"
/locus_tag="hp2018_0385"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(382558..382581)
/gene="ftsH2"
/locus_tag="hp2018_0385"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(382255..382257,382402..382404,
382555..382578))
/gene="ftsH2"
/locus_tag="hp2018_0385"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(382399..382416)
/gene="ftsH2"
/locus_tag="hp2018_0385"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(382213..382215)
/gene="ftsH2"
/locus_tag="hp2018_0385"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(381379..382005)
/gene="ftsH2"
/locus_tag="hp2018_0385"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene complement(383217..384194)
/locus_tag="hp2018_0386"
/db_xref="GeneID:12371584"
CDS complement(383217..384194)
/locus_tag="hp2018_0386"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11 methyltransferase"
/protein_id="YP_005791208.1"
/db_xref="GI:385231289"
/db_xref="GeneID:12371584"
/translation="MYYEFFFIFPKERELFESFLLDTTHLALEESSLENLKAFDDEET
IEFVSQSSWRYFTTHDPLKENLKEKPPHLKNFVILRSEKNLSDSLFPALEAFCLNLKQ
SLQSEFDFFYLSRNLASKNWLEAYKQAVLPVRCAKFYIHPSWHQKPSHVAIDDCIMID
PALAFGSGHHESTSMCLELLSSLDLKRKNALDVGCGSGILSIALKKQGVSALTACDTD
SLAVEETLKNFSLNQIPLLAQDKVVYGSTQKIEGRFDVIVANLVADVIKSLYSEFVRL
CNHTLILSGILETHLNSVLQIYYNGFEVLEQRQRNEWVALKLLKKQSIN"
misc_feature complement(383253..384191)
/locus_tag="hp2018_0386"
/note="ribosomal protein L11 methyltransferase; Region:
prmA; TIGR00406"
/db_xref="CDD:161861"
misc_feature complement(383352..383630)
/locus_tag="hp2018_0386"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(383415..383417,383457..383462,
383544..383549,383598..383618))
/locus_tag="hp2018_0386"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(384207..384548)
/gene="cheY"
/locus_tag="hp2018_0387"
/db_xref="GeneID:12371585"
CDS complement(384207..384548)
/gene="cheY"
/locus_tag="hp2018_0387"
/codon_start=1
/transl_table=11
/product="Chemotaxis regulator"
/protein_id="YP_005791209.1"
/db_xref="GI:385231290"
/db_xref="GeneID:12371585"
/translation="MRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN
MPEMNGLDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK
EKLEVVLGTND"
misc_feature complement(384222..384548)
/gene="cheY"
/locus_tag="hp2018_0387"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(384231..384548)
/gene="cheY"
/locus_tag="hp2018_0387"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature complement(order(384264..384269,384276..384278,
384333..384335,384399..384401,384423..384425))
/gene="cheY"
/locus_tag="hp2018_0387"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(384423..384425)
/gene="cheY"
/locus_tag="hp2018_0387"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(384399..384407,384411..384416))
/gene="cheY"
/locus_tag="hp2018_0387"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(384261..384269)
/gene="cheY"
/locus_tag="hp2018_0387"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene 384837..385472
/locus_tag="hp2018_0388"
/db_xref="GeneID:12371586"
CDS 384837..385472
/locus_tag="hp2018_0388"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_005791210.1"
/db_xref="GI:385231291"
/db_xref="GeneID:12371586"
/translation="MKKERQGFYKQVHYLRILILGMSFLNILNAENLSYMSSSYQIGT
VFMRPLNTNKLLQGASILQGYEVNPKNDWAYSRYYFFIDYGNVLFNNDSTLQANMFTY
GVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYF
RAIGKFGVQFRTIVLYHKVDVEIGMKIFLTPERRSLFERSFLFFVSHSWHF"
misc_feature 385014..385403
/locus_tag="hp2018_0388"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene complement(385487..385575)
/locus_tag="hp2018_t11"
/db_xref="GeneID:12371587"
tRNA complement(385487..385575)
/locus_tag="hp2018_t11"
/product="tRNA-Ser"
/db_xref="GeneID:12371587"
gene complement(385618..386025)
/locus_tag="hp2018_0389"
/db_xref="GeneID:12371588"
CDS complement(385618..386025)
/locus_tag="hp2018_0389"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791211.1"
/db_xref="GI:385231292"
/db_xref="GeneID:12371588"
/translation="MLILGHPLIPSTRFVFIKNTDGIHSSANNDIVCFEANPKNLELA
KYCCENGVHFSVIFLSHKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSK
ILFSMDFNDTESWEICAKNQIDGVISKDSLLLK"
gene complement(386028..386270)
/locus_tag="hp2018_0390"
/db_xref="GeneID:12371589"
CDS complement(386028..386270)
/locus_tag="hp2018_0390"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791212.1"
/db_xref="GI:385231293"
/db_xref="GeneID:12371589"
/translation="MLRILIPLLIIVWFLWRLFLKQKPLKDDPKDNHSYTQQTPKELE
DHMIVCSKCQTYVSSKDAIYSGAIAYCSETCLKDKR"
gene complement(386264..386800)
/gene="gidB"
/locus_tag="hp2018_0391"
/db_xref="GeneID:12371590"
CDS complement(386264..386800)
/gene="gidB"
/locus_tag="hp2018_0391"
/codon_start=1
/transl_table=11
/product="rRNA small subunit methyltransferase/glucose
inhibited division protein B"
/protein_id="YP_005791213.1"
/db_xref="GI:385231294"
/db_xref="GeneID:12371590"
/translation="MNPLLQDYACILLEWNQTHNLSGARNLSELEPQITDALKPLEFV
KDFKSCLDIGSGAGLPAIPLAIEKPEAQFILLEPRIKRAAFLNYLKSVLPLNNIEIIK
KRLEDYQNLLQVDLITSRAVASSSFLIEKSRCFLKDKGHFLFYKGEQLKNEIAYKTTE
CFVHQKRVYFYKSKESLC"
misc_feature complement(386369..386650)
/gene="gidB"
/locus_tag="hp2018_0391"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(386441..386443,386486..386494,
386567..386572,386624..386644))
/gene="gidB"
/locus_tag="hp2018_0391"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(386797..387834)
/gene="queA"
/locus_tag="hp2018_0392"
/db_xref="GeneID:12371591"
CDS complement(386797..387834)
/gene="queA"
/locus_tag="hp2018_0392"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine--tRNA
ribosyltransferase-isomerase"
/protein_id="YP_005791214.1"
/db_xref="GI:385231295"
/db_xref="GeneID:12371591"
/translation="MKEFDLESYDYHLPKELIANYPVLPKEKAKLLVYERRSQTITHT
TFEHVLDFFPKNALVVLNDTKVIKARLFGSKHAFLPSKTTEVFFHRFFKGNTALTQIK
GKIKAGDKIFFDENYYAEVLELLHNGQRLIAFYDNQTPLTQENILKLLEQYGHMPLPP
YIKRADESLDVHEYQSVFAKHIGAVAAPTASLHFSQNTLEKLLKDFKHAFLTLHVGAG
TFLSVETKDIREHQIHTEVLHIPKKSQEILQESQEILCIGTTALRSVEYFKRLKNPNQ
ESFECDIFLHLANPIQHVNHLLTNFHLPKSSLLILVSAMIGLEKTKEIYKIAIEKKYR
FYSYGDGMLIL"
misc_feature complement(386800..387825)
/gene="queA"
/locus_tag="hp2018_0392"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region: queA;
PRK00147"
/db_xref="CDD:178900"
misc_feature complement(386800..387822)
/gene="queA"
/locus_tag="hp2018_0392"
/note="Queuosine biosynthesis protein; Region:
Queuosine_synth; pfam02547"
/db_xref="CDD:202279"
gene complement(387835..388584)
/gene="tatC"
/locus_tag="hp2018_0393"
/db_xref="GeneID:12371592"
CDS complement(387835..388584)
/gene="tatC"
/locus_tag="hp2018_0393"
/codon_start=1
/transl_table=11
/product="Twin-arginine translocation protein"
/protein_id="YP_005791215.1"
/db_xref="GI:385231296"
/db_xref="GeneID:12371592"
/translation="MFEDLKPHLQELRKRLMVSVGTILVAFLGCFHFWKNIFEFVKNS
YKGTLIQLSPIEGVMVAVKISFSAAIVISMPVIFWQLWLFIAPGLYKNEKKVILPFVF
FGSGMFLIGAAFSYYVVFPFIIEYLATFGSDVFAANISASSYVSFFTRLILGFGVAFE
LPVLAYFLAKVGLITDASLKAYFKYAIVVIFIVAAIITPPDVVSQIFMALPLVGLYGL
SILIAKMVNPAPKDDESDHENDAKEHTKSES"
misc_feature complement(387937..388572)
/gene="tatC"
/locus_tag="hp2018_0393"
/note="Twin arginine targeting (Tat) protein translocase
TatC; Region: tatC; TIGR00945"
/db_xref="CDD:211615"
gene complement(388577..389059)
/gene="tatB"
/locus_tag="hp2018_0394"
/db_xref="GeneID:12371593"
CDS complement(388577..389059)
/gene="tatB"
/locus_tag="hp2018_0394"
/codon_start=1
/transl_table=11
/product="Twin-arginine translocation protein"
/protein_id="YP_005791216.1"
/db_xref="GI:385231297"
/db_xref="GeneID:12371593"
/translation="MFGMGFFEILVVLIVAIIFLGPEKFPQAVVDVVKFFRAVKKTLN
DAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKITAENEIKSIQDL
MQDYKRSLETNTLPDHLNEEVSNEEALNKEVSSDESPKEVKSTTDNNAKEHNKEKEHV
"
misc_feature complement(388589..389059)
/gene="tatB"
/locus_tag="hp2018_0394"
/note="sec-independent translocase; Provisional; Region:
PRK04098"
/db_xref="CDD:179738"
gene complement(389126..390136)
/gene="ruvB"
/locus_tag="hp2018_0395"
/db_xref="GeneID:12371594"
CDS complement(389126..390136)
/gene="ruvB"
/locus_tag="hp2018_0395"
/codon_start=1
/transl_table=11
/product="Holliday junction DNA helicase"
/protein_id="YP_005791217.1"
/db_xref="GI:385231298"
/db_xref="GeneID:12371594"
/translation="MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISIC
AAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNL
QAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTP
RIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFDEADLAYLSLLANAQGK
PVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPKTHALLKIPTLKSQT
LF"
misc_feature complement(389153..390127)
/gene="ruvB"
/locus_tag="hp2018_0395"
/note="Holliday junction DNA helicase RuvB; Reviewed;
Region: ruvB; PRK00080"
/db_xref="CDD:234619"
misc_feature complement(389597..390049)
/gene="ruvB"
/locus_tag="hp2018_0395"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(389936..389959)
/gene="ruvB"
/locus_tag="hp2018_0395"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(389657..389659,389804..389806,
389933..389956))
/gene="ruvB"
/locus_tag="hp2018_0395"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(389801..389818)
/gene="ruvB"
/locus_tag="hp2018_0395"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(389621..389623)
/gene="ruvB"
/locus_tag="hp2018_0395"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(389153..389374)
/gene="ruvB"
/locus_tag="hp2018_0395"
/note="Holliday junction DNA helicase ruvB C-terminus;
Region: RuvB_C; pfam05491"
/db_xref="CDD:203257"
gene complement(390137..390949)
/gene="panB"
/locus_tag="hp2018_0396"
/db_xref="GeneID:12371595"
CDS complement(390137..390949)
/gene="panB"
/locus_tag="hp2018_0396"
/EC_number="2.1.2.11"
/codon_start=1
/transl_table=11
/product="3-methyl-2-oxobutanoate
hydroxymethyltransferase"
/protein_id="YP_005791218.1"
/db_xref="GI:385231299"
/db_xref="GeneID:12371595"
/translation="MSMQTAPIKKITLSHLQAKKNQEKIIAITAYDALFAQIFDPLVD
VILVGDSLNMSFFNQNDTLSASVKMMLYHTKAVCAGAKTPFIITDMPFGSYKDEKTAL
KNAIRVYKETQASAIKLEGGKEKAKLVKTLTNEGVIVVGHIGLMPQFVRLDGGYKIKG
KNEEQQKKLLEDALSLEEAGAGLLVLEGITTPIAQTITQKIKIPTIGIGSGKDCDGQI
LVWSDMLGFFDSFKPKFVREYLKGKELIQNALQQYADDVKKGNFPNELESYH"
misc_feature complement(390161..390913)
/gene="panB"
/locus_tag="hp2018_0396"
/note="Ketopantoate hydroxymethyltransferase (KPHMT) is
the first enzyme in the pantothenate biosynthesis pathway.
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes
the first committed step in the biosynthesis of
pantothenate (vitamin B5), which is a...; Region:
KPHMT-like; cd06557"
/db_xref="CDD:119342"
misc_feature complement(order(390209..390223,390230..390232,
390272..390277,390284..390286,390404..390406,
390488..390499,390503..390508,390536..390553,
390605..390607,390620..390625,390632..390634,
390644..390646,390671..390676,390713..390715,
390722..390724,390731..390736,390743..390745,
390758..390763,390773..390790,390794..390796,
390836..390838,390845..390856,390908..390913))
/gene="panB"
/locus_tag="hp2018_0396"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:119342"
misc_feature complement(order(390290..390292,390296..390298,
390389..390391,390509..390511,390524..390526,
390596..390598,390683..390685,390797..390805,
390809..390811,390863..390865))
/gene="panB"
/locus_tag="hp2018_0396"
/note="active site"
/db_xref="CDD:119342"
misc_feature complement(order(390596..390598,390683..390685,
390800..390802))
/gene="panB"
/locus_tag="hp2018_0396"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119342"
gene 391098..391820
/locus_tag="hp2018_0397"
/db_xref="GeneID:12371596"
CDS 391098..391820
/locus_tag="hp2018_0397"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791219.1"
/db_xref="GI:385231300"
/db_xref="GeneID:12371596"
/translation="MGLKKRAILWSLMGFCAGLSALDYDTLDPKYYKYIKYYKAYEDK
EVEELIRDLKRANAKSGLILGINTGFFYNHEIMVKTNSSSITGNILNYLFAYGLRFGY
QTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDFPLPFV
GKYLYMGGYMGLGLGVVAHGVNYTAEWGMSFNTGLALTVLEKNRIEFEFKILNNFPFL
QSNSSKETWWGAIASIGYQYVF"
gene 391810..392667
/locus_tag="hp2018_0398"
/db_xref="GeneID:12371597"
CDS 391810..392667
/locus_tag="hp2018_0398"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791220.1"
/db_xref="GI:385231301"
/db_xref="GeneID:12371597"
/translation="MCSKKIRNLILCLGFILSLRAEENITKENMTETNTTEENTPKDA
PILLEEKRAQTLELKEENEVAKKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQR
MAKNKSGFFIGVILGDIGVNANPYEKFEPLSNIQASPLLYGLRSGYQKYFANGISALR
FYGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMY
QNLKEIRGYSQPNAFGLVLNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNI
YYISYNYLL"
misc_feature 392236..392658
/locus_tag="hp2018_0398"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 392679..393620
/locus_tag="hp2018_0399"
/db_xref="GeneID:12371598"
CDS 392679..393620
/locus_tag="hp2018_0399"
/codon_start=1
/transl_table=11
/product="3'-to-5' oligoribonuclease A"
/protein_id="YP_005791221.1"
/db_xref="GI:385231302"
/db_xref="GeneID:12371598"
/translation="MKLKYWLVYLAFIIGLQATDYDNLEEENQQLDEKINNLKRQLTE
KGVSPKEMDKDKFEEEYLERTYPKISSKKRKKLLKSFSIADDKSGVFLGGGYAYGELN
LSYQGEMLDRYGANAPSAFKNNININAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGG
GALKENALRQSVGSFFYVLGAMNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDKP
NQNGRDLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGV
EEGAVYQNEENDERLLISANNQFKRSSFLLVNYAFIF"
misc_feature 393081..393617
/locus_tag="hp2018_0399"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:110823"
gene 393630..394952
/locus_tag="hp2018_0400"
/db_xref="GeneID:12371599"
CDS 393630..394952
/locus_tag="hp2018_0400"
/codon_start=1
/transl_table=11
/product="Putative periplasmic protein"
/protein_id="YP_005791222.1"
/db_xref="GI:385231303"
/db_xref="GeneID:12371599"
/translation="MGLGFKILALVVLILGGYLIFNAFITKPRALSFSLKSEENALND
NNEALFWDLKKPIKVKIVAPKGIKRYEIKVTTKDNLILYEKESLVLDKPKSLEVPLIR
PEIMGLESKCLDYEFQASDWSYANFFNGNKASFKQEVCIDTIKPSITILSRSPSIAYG
GSAIVIFEALDKNLSQAFVHVKKKDFKAFRLLEFKQRNVFIALVPWSYENKDFKAFIV
AKDKAYNSNTTPLLFKRKTHRLREKDINLSALKDKVAKQEKFQNHTEQTLLEMFSNAR
LKDLEKIQKIALEQGDFDKDFSHFQALKPLNGPFKMTSNFLENRRFLKDNQVLFKFLH
LGVDLIPSKDLSLAFDPSVKRVFKGELDFYGNSLMDCYGLGLCVFLAHLKDDESVGSS
GLKLGSGLHLGMLLQGVFVRPNEWLNEQWIKTNIIAPIEQAKRLLMKG"
misc_feature <394260..>394781
/locus_tag="hp2018_0400"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:31082"
gene 394955..395539
/gene="minC"
/locus_tag="hp2018_0401"
/db_xref="GeneID:12371600"
CDS 394955..395539
/gene="minC"
/locus_tag="hp2018_0401"
/codon_start=1
/transl_table=11
/product="septum site-determining like protein"
/protein_id="YP_005791223.1"
/db_xref="GI:385231304"
/db_xref="GeneID:12371600"
/translation="MLKTNQKNVHAFEIEKQEPEAVMEFLEKNHALLQYFLIIFKYDI
ESEVKAVLHKHQLLFLETNRALNGRYIKTTEKDANLLKQNSPNAIEPKTTIYERNIRS
GEEIYSANHLIFLGNIHNGAKIISEGSVSVYGVCEGAIACFGEYLILKEVKSAQIVFQ
NKILSLKEVERLLVNKNIKIITKNDDILDIKEVL"
misc_feature 394958..395467
/gene="minC"
/locus_tag="hp2018_0401"
/note="septum formation inhibitor; Reviewed; Region: minC;
PRK00556"
/db_xref="CDD:179064"
misc_feature 395231..>395467
/gene="minC"
/locus_tag="hp2018_0401"
/note="Septum formation inhibitor MinC, C-terminal domain;
Region: MinC_C; pfam03775"
/db_xref="CDD:146423"
gene 395536..396423
/gene="lpxC"
/locus_tag="hp2018_0402"
/db_xref="GeneID:12371601"
CDS 395536..396423
/gene="lpxC"
/locus_tag="hp2018_0402"
/codon_start=1
/transl_table=11
/product="UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine
deacetylase"
/protein_id="YP_005791224.1"
/db_xref="GI:385231305"
/db_xref="GeneID:12371601"
/translation="MKQTTINHSVELVGIGLHKGVPVKLVLEPLEENQGIVFYRSDLG
VKLPLKPENIVDTKMATVLGKDNARISTIEHLLSAVHAYGIDNLKISVDNEEIPIMDG
SALTYCMLLDEAGIKELDAPKKVMEIKQAVEVREGDKFVKIEPDSQLSLNFTIDFNHP
VIAKQAHHFVFSKTAYKEQVAKARTFGFLQEVNYLRSIGLAKGGSLNNCIVLDENSIL
NKEGLRCEKEFVCHKILDAMGDLMVLGMPVMGKYTSFSGSHKLNSMLVKAILADAKNY
EVLIASDPAKEFALQKAFA"
misc_feature 395536..396417
/gene="lpxC"
/locus_tag="hp2018_0402"
/note="UDP-3-0-acyl N-acetylglucosamine deacetylase;
Region: lpxC; TIGR00325"
/db_xref="CDD:188041"
misc_feature 395536..396357
/gene="lpxC"
/locus_tag="hp2018_0402"
/note="UDP-3-O-acyl N-acetylglycosamine deacetylase;
Region: LpxC; pfam03331"
/db_xref="CDD:202596"
gene 396445..396942
/locus_tag="hp2018_0403"
/db_xref="GeneID:12371602"
CDS 396445..396942
/locus_tag="hp2018_0403"
/codon_start=1
/transl_table=11
/product="putative molecular chaperone"
/protein_id="YP_005791225.1"
/db_xref="GI:385231306"
/db_xref="GeneID:12371602"
/translation="MELDLALISLGERVLLGVYQNDFLCNSYTSKLKTSEALVGVFSQ
LFEDFKNPAIYPTIHSDLPAIKGVYYAKGPGSFTSLKLTHVFLHTLALIHDFELYSTT
GFDFNDNTPILAYANKYFVSQERESLTDFKDLKIAPKDFKLPSFLEKDKFTQLNTPFY
ILPPI"
misc_feature 396445..396939
/locus_tag="hp2018_0403"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 396996..397877
/gene="thrB"
/locus_tag="hp2018_0404"
/db_xref="GeneID:12371603"
CDS 396996..397877
/gene="thrB"
/locus_tag="hp2018_0404"
/EC_number="2.7.1.39"
/codon_start=1
/transl_table=11
/product="Homoserine kinase"
/protein_id="YP_005791226.1"
/db_xref="GI:385231307"
/db_xref="GeneID:12371603"
/translation="MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSSFHAVKLVGE
GEGIPKFLTNNIFTKVFYEILKKHGNDGSFKFLLHNKVPITRGMGSSSAMIVGAVASA
FAFLGFPFDRENILNTALIYENHPDNITPAVFGGYNAAFVEKKKVISLKTKIPSFLKA
VMVIPNRAISTKQSRHLLPKRYSVQESVFNLSHASLMTMAIAQGKWDLLRYCSKDRMH
QYKRMQTYPVLFAIQKLALENNALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKF
RVAVLDFDNDGVLIEKD"
misc_feature 396996..397868
/gene="thrB"
/locus_tag="hp2018_0404"
/note="homoserine kinase; Region: thrB; TIGR00191"
/db_xref="CDD:129295"
misc_feature 397218..397403
/gene="thrB"
/locus_tag="hp2018_0404"
/note="GHMP kinases N terminal domain; Region:
GHMP_kinases_N; pfam00288"
/db_xref="CDD:201132"
gene 397864..398118
/locus_tag="hp2018_0405"
/db_xref="GeneID:12371604"
CDS 397864..398118
/locus_tag="hp2018_0405"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791227.1"
/db_xref="GI:385231308"
/db_xref="GeneID:12371604"
/translation="MRKTEIKIRMCVACRMRQPQKDLLRLKSFDNQIMEFDGKGRSFY
VCGNCLKNGEKKLLKAVSKIKNAPKDTKNIINWIKERSIT"
misc_feature 397864..398112
/locus_tag="hp2018_0405"
/note="Predicted nucleic-acid-binding protein implicated
in transcription termination [Transcription]; Region:
COG2740"
/db_xref="CDD:32622"
gene 398115..400964
/gene="infB"
/locus_tag="hp2018_0406"
/db_xref="GeneID:12371605"
CDS 398115..400964
/gene="infB"
/locus_tag="hp2018_0406"
/codon_start=1
/transl_table=11
/product="Translation initiation factor 2"
/protein_id="YP_005791228.1"
/db_xref="GI:385231309"
/db_xref="GeneID:12371605"
/translation="MSDMVDLKKFVTELGKTQKELKNVIEQAKDIGLELKTNSKMTPE
QAGKLYKYIVDGIKEQIQANQPAKNLEQDNKDDLNTAATPKPLAKKASKTPKKEETKA
QPKPKKTKEKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQE
IQKSREALNKLTQSNTNTANNANSASNVSNAKKEISEVKKQEQEIKRHENIKRRTGFR
VIKRNDENENKTENSVTESKKPTQSAAAIFEDIKKEWQEKDKQETKKTKKPSKPKATP
TAKNNKSHKIDFSDVRDFKGNDIYDDETDEILLFDLHEQDNFNKEEEEKEARQNINDR
VRVQRKNPWMNEGGIKRQSKKKHAFRNDNSQKVIQSAIAIPEEVRVYEFAQKANLNLA
DVIKTLFNLGLMVTKNDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEVLEGVKKERP
PVVTIMGHVDHGKTSLLDKIRDKRVAHTEAGGITQHIGAYMVEKNNKWVSFIDTPGHE
AFSQMRNRGAQVTDIAVIVIAADDGVKQQTIEALEHAKVANVPVIFAMNKMDKPNVNP
DKLKAECAELGYNPVDWGGEHEFIPVSAKTGDGIDNLLETILIQADIMELKAIEEGSA
RAVVLEGSVEKGRGAVATVIVQSGTLSVGDSFFAETAFGKVRTMTDDQGKSIQSLKPS
MVALITGLSEVPPAGSVLIGVENDSIARLQAQKRATYLRQKALSKSTKVSFDELSEMV
ANKELKNIPVVIKADTQGSLEAIKNSLLELNNEEVAIQVIHSGVGGITENDLSLVSSS
EHAVILGFNIRPTGNVKNKAKEYNVSIKTYTVIYALIEEMRSLLLGLMSPIIEEEHTG
QAEVRETFNIPKVGTIAGCVVSDGVIARGIKVRLIRDGVVIHTGEILSLKRFKDDVKE
VSKGYECGIMLENYNEIKVGDVFETYKEIHKKRTL"
misc_feature 399213..400961
/gene="infB"
/locus_tag="hp2018_0406"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature 399237..399392
/gene="infB"
/locus_tag="hp2018_0406"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature 399465..399956
/gene="infB"
/locus_tag="hp2018_0406"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature 399483..399506
/gene="infB"
/locus_tag="hp2018_0406"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature order(399486..399488,399492..399494,399504..399509,
399516..399518,399525..399530,399576..399581,
399633..399638,399705..399710,399813..399815,
399825..399827)
/gene="infB"
/locus_tag="hp2018_0406"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature order(399489..399509,399636..399638,399783..399788,
399792..399797,399891..399899)
/gene="infB"
/locus_tag="hp2018_0406"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature 399558..399578
/gene="infB"
/locus_tag="hp2018_0406"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature 399564..399566
/gene="infB"
/locus_tag="hp2018_0406"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature 399621..399632
/gene="infB"
/locus_tag="hp2018_0406"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature 399627..399683
/gene="infB"
/locus_tag="hp2018_0406"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature 399783..399794
/gene="infB"
/locus_tag="hp2018_0406"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature 399891..399899
/gene="infB"
/locus_tag="hp2018_0406"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature 399984..400265
/gene="infB"
/locus_tag="hp2018_0406"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature 400305..400631
/gene="infB"
/locus_tag="hp2018_0406"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature 400680..400931
/gene="infB"
/locus_tag="hp2018_0406"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene 400964..401299
/locus_tag="hp2018_0407"
/db_xref="GeneID:12371606"
CDS 400964..401299
/locus_tag="hp2018_0407"
/codon_start=1
/transl_table=11
/product="Ribosome-binding factor A"
/protein_id="YP_005791229.1"
/db_xref="GI:385231310"
/db_xref="GeneID:12371606"
/translation="MNAHKERLESNLLELLQEALAGLNDSELNSLSVTKVECSKGKHH
AYVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDNSLEKQLRLDAIFN
EIAKGKDND"
misc_feature <401033..401284
/locus_tag="hp2018_0407"
/note="ribosome-binding factor A; Region: rbfA; TIGR00082"
/db_xref="CDD:129191"
gene 401292..401732
/gene="rimP"
/locus_tag="hp2018_0408"
/db_xref="GeneID:12371607"
CDS 401292..401732
/gene="rimP"
/locus_tag="hp2018_0408"
/codon_start=1
/transl_table=11
/product="ribosome maturation factor"
/protein_id="YP_005791230.1"
/db_xref="GI:385231311"
/db_xref="GeneID:12371607"
/translation="MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGA
VSLDICQQVSEVISPLLDVCDFIQDAYTLEVSSMGLERTLKTPKHFKLSLGEKVEVKL
INKESFQAILKDANDLSADFELEDHAIKSVEYKDLKKVKTLFEW"
misc_feature 401301..>401594
/gene="rimP"
/locus_tag="hp2018_0408"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
misc_feature 401316..401717
/gene="rimP"
/locus_tag="hp2018_0408"
/note="Uncharacterized BCR, YhbC family COG0779; Region:
DUF150; pfam02576"
/db_xref="CDD:202291"
misc_feature 401526..401729
/gene="rimP"
/locus_tag="hp2018_0408"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature order(401592..401594,401598..401600,401607..401609,
401613..401615,401631..401633,401652..401654,
401676..401684,401688..401693,401697..401714)
/gene="rimP"
/locus_tag="hp2018_0408"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature order(401637..401639,401643..401645,401688..401690)
/gene="rimP"
/locus_tag="hp2018_0408"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene 401894..403006
/locus_tag="hp2018_0409"
/db_xref="GeneID:12371608"
CDS 401894..403006
/locus_tag="hp2018_0409"
/codon_start=1
/transl_table=11
/product="putative phosphohydrolase"
/protein_id="YP_005791231.1"
/db_xref="GI:385231312"
/db_xref="GeneID:12371608"
/translation="MLISIAFLLVLCLLNYSSFRMLKSFLTLKKISRYAYLGFFILLS
AGEAAFVFYRNTMPSHLFVLTSACSFVSFIVFIFSLSFYGFSYSIEKIDFLPSRRKGL
KNFLRIGFYLALLGYFWRGFYEGLARPKIKETPIYLDKLDKELKIILLTDMHVGSLLQ
KDFVDYIVEEVNQKEVDMVLIGGDLVDENIEKVKSFLLPLNNLKSTHGTFYVPGNHEY
YHGIEPILSFLETLNLTILGNECVHLGGINLCGVYDYFARKRQNFAPNIDEALKKRDS
SKPTILLAHQPKQIRSLKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLHGLYKHSG
TTQIYVSSGAGYWGVPLRFLAPSEIAYLRLLPKNQA"
misc_feature 401960..402994
/locus_tag="hp2018_0409"
/note="Predicted phosphohydrolases [General function
prediction only]; Region: COG1408"
/db_xref="CDD:31598"
misc_feature 402350..402985
/locus_tag="hp2018_0409"
/note="Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain; Region: MPP_YkuE_C;
cd07385"
/db_xref="CDD:163628"
misc_feature order(402353..402355,402443..402445,402536..402541,
402746..402748,402809..402811,402815..402817)
/locus_tag="hp2018_0409"
/note="putative active site [active]"
/db_xref="CDD:163628"
misc_feature order(402353..402355,402443..402445,402536..402538,
402746..402748,402809..402811,402815..402817)
/locus_tag="hp2018_0409"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:163628"
gene 403188..403301
/locus_tag="hp2018_0410"
/db_xref="GeneID:12371609"
CDS 403188..403301
/locus_tag="hp2018_0410"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791232.1"
/db_xref="GI:385231313"
/db_xref="GeneID:12371609"
/translation="MILKIIHKKRLKAFFTTNNQTQKSLILTKAFIKIFLN"
gene 403361..404032
/locus_tag="hp2018_0411"
/db_xref="GeneID:12371610"
CDS 403361..404032
/locus_tag="hp2018_0411"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="YP_005791233.1"
/db_xref="GI:385231314"
/db_xref="GeneID:12371610"
/translation="MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN
YDLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSI
KALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRD
QIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCYPK
PACEE"
misc_feature 403361..404011
/locus_tag="hp2018_0411"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature 403370..403699
/locus_tag="hp2018_0411"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(403379..403384,403523..403525,403583..403585,
403640..403642,403649..403654)
/locus_tag="hp2018_0411"
/note="active site"
/db_xref="CDD:238088"
misc_feature order(403508..403513,403517..403525)
/locus_tag="hp2018_0411"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 403649..403657
/locus_tag="hp2018_0411"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 403721..404002
/locus_tag="hp2018_0411"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(403793..403795,403850..403855,403907..403909,
403916..403918,403940..403945,403976..403978,
403991..403993)
/locus_tag="hp2018_0411"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene complement(404826..405869)
/locus_tag="hp2018_0412"
/db_xref="GeneID:12371611"
CDS complement(404826..405869)
/locus_tag="hp2018_0412"
/codon_start=1
/transl_table=11
/product="3'-to-5' oligoribonuclease B"
/protein_id="YP_005791234.1"
/db_xref="GI:385231315"
/db_xref="GeneID:12371611"
/translation="MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYE
ILNAIAQSKESEFLILVSDLNLNLNKAEYLQDKIQEHRLQNKNIQIQLLDHHISGKEV
AESFHWYFLDTNRCATKIVYEFLKKHYAILEPKNTLWLEPLVEMVNSVDIWDTQGYGF
ELGKVCMRMITQSSELNRFMFDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKK
IALGGDPTTETMDNISSNAQTHLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLT
QNPDFDFYMDVNAKGNVSLRANGNCDVCELSQICFNGGGHRNASGGKIDGFKESFNYK
DIKEQVEEIFNNT"
misc_feature complement(404838..405863)
/locus_tag="hp2018_0412"
/note="Predicted phosphohydrolase (DHH superfamily)
[General function prediction only]; Region: COG2404"
/db_xref="CDD:32540"
misc_feature complement(405450..405863)
/locus_tag="hp2018_0412"
/note="DHH family; Region: DHH; pfam01368"
/db_xref="CDD:201752"
gene complement(405898..408099)
/gene="flhA"
/locus_tag="hp2018_0413"
/db_xref="GeneID:12371612"
CDS complement(405898..408099)
/gene="flhA"
/locus_tag="hp2018_0413"
/codon_start=1
/transl_table=11
/product="Flagellar biosynthesis protein"
/protein_id="YP_005791235.1"
/db_xref="GI:385231316"
/db_xref="GeneID:12371612"
/translation="MANERSKLAFKKTFPVFKRFLQSKDLALVVFVIAILAIIIVPLP
PFVLDFLLTISIALSVLIILIGLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILT
QGYKGPSAVSDIITAFGEFSVSGNYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFA
LDAMPGKQMAIDADLNSGLIDDKEAKKRRTALSQEADFYGAMDGASKFVKGDAIASII
ITLINIIGGFLVGVFQRDMSLSFSASTFTILTIGDGLVGQIPALIIATATGIVATRTT
QNEEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWLIS
REGKDGLLTKLENYLSQKFGLDLSEKPHSSKIKPHAPTTKTKTQEEIKREEEQAIDEV
LKIEFLELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPP
THYEIKLKGIVIGEGMVMPDKFLAMNTGFVNKEIEGIPTKEPAFGMDALWIDAKNKEE
AIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEESKKIP
TGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAF
KSEDGRLKFLTFSTDSEQFLLNKLRENGASKSLLLNVGELQKLIEGVSEEAMKVLQKG
IAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSNFEALGTIHINF"
misc_feature complement(405904..407898)
/gene="flhA"
/locus_tag="hp2018_0413"
/note="flagellar biosynthesis protein FlhA; Validated;
Region: flhA; PRK06012"
/db_xref="CDD:180350"
misc_feature complement(405940..407898)
/gene="flhA"
/locus_tag="hp2018_0413"
/note="FHIPEP family; Region: FHIPEP; pfam00771"
/db_xref="CDD:201434"
gene 408235..408507
/locus_tag="hp2018_0414"
/db_xref="GeneID:12371613"
CDS 408235..408507
/locus_tag="hp2018_0414"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_005791236.1"
/db_xref="GI:385231317"
/db_xref="GeneID:12371613"
/translation="MALNLEKKQEIIKAFATKENDTGSCEVQVALLNERIRLLTEHLK
ANPKDHSSRLGLLKLVAQRRNLLKYIKRTDHARYVVLIEKLGIKDR"
misc_feature 408253..408492
/locus_tag="hp2018_0414"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:48353"
misc_feature order(408256..408258,408307..408309,408316..408318,
408337..408339,408349..408351,408358..408360,
408370..408372,408376..408381,408385..408390,
408427..408429,408439..408441)
/locus_tag="hp2018_0414"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:48353"
misc_feature order(408322..408324,408331..408336,408343..408345,
408352..408354,408472..408474,408484..408486)
/locus_tag="hp2018_0414"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:48353"
misc_feature order(408412..408414,408424..408426,408487..408492)
/locus_tag="hp2018_0414"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:48353"
gene 408652..409836
/locus_tag="hp2018_0415"
/db_xref="GeneID:12371614"
CDS 408652..409836
/locus_tag="hp2018_0415"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791237.1"
/db_xref="GI:385231318"
/db_xref="GeneID:12371614"
/translation="MLIVLMVFLFFRCYFQASLKETFRINHLKTMPFKWLTLAFLGVF
LSIFPNMFNMYDSQTFRYNLFALNMSLTYACGALCLLFSSCLRIKLNQKILFYSMAVA
NFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLFFTL
SVFVGFLVVILSATRSATIAFVATFLILSCFILYAKKSLKPLGYMVVVSLILSALYIG
SNALEKRGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGM
AASEKCQRLEEILSLSQSYRAKDLILCYERYDNQIIHVLATRGIIGFLIWLFFLLVIV
KIFWSGTKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMVMMAVFVKKDKS
AF"
misc_feature 408652..409602
/locus_tag="hp2018_0415"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:33116"
misc_feature 409129..409602
/locus_tag="hp2018_0415"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:203125"
gene 409964..410476
/gene="aroD"
/locus_tag="hp2018_0416"
/db_xref="GeneID:12371615"
CDS 409964..410476
/gene="aroD"
/locus_tag="hp2018_0416"
/EC_number="4.2.1.10"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate dehydratase"
/protein_id="YP_005791238.1"
/db_xref="GI:385231319"
/db_xref="GeneID:12371615"
/translation="MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLD
VELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVH
LTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPN
NPNNPINNQK"
misc_feature 409964..410392
/gene="aroD"
/locus_tag="hp2018_0416"
/note="Dehydroquinase class II; Region: DHquinase_II;
pfam01220"
/db_xref="CDD:189894"
misc_feature 409967..410392
/gene="aroD"
/locus_tag="hp2018_0416"
/note="Dehydroquinase (DHQase), type II. Dehydroquinase
(or 3-dehydroquinate dehydratase) catalyzes the reversible
dehydration of 3-dehydroquinate to form
3-dehydroshikimate. This reaction is part of two metabolic
pathways: the biosynthetic shikimate pathway...; Region:
DHQase_II; cd00466"
/db_xref="CDD:238262"
misc_feature order(409991..409993,409997..409999,410120..410134,
410141..410143,410150..410152,410198..410200,
410219..410221,410228..410233,410240..410242,
410300..410302)
/gene="aroD"
/locus_tag="hp2018_0416"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:238262"
misc_feature order(410012..410014,410027..410029,410189..410191,
410195..410200,410207..410209,410228..410230,
410267..410275,410300..410302)
/gene="aroD"
/locus_tag="hp2018_0416"
/note="active site"
/db_xref="CDD:238262"
misc_feature order(410276..410278,410282..410287,410318..410323,
410327..410338,410342..410350,410357..410359,
410369..410371,410381..410383,410390..410392)
/gene="aroD"
/locus_tag="hp2018_0416"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238262"
gene 410489..411562
/locus_tag="hp2018_0417"
/db_xref="GeneID:12371616"
CDS 410489..411562
/locus_tag="hp2018_0417"
/EC_number="3.4.13.9"
/codon_start=1
/transl_table=11
/product="Proline dipeptidase"
/protein_id="YP_005791239.1"
/db_xref="GI:385231320"
/db_xref="GeneID:12371616"
/translation="MRGLERESHFTLNENAMFFECTYSCDNALFLQLDDRSFFITDSR
YTQEAKESIQPKNGVLAEVIESSDLVQSAIDLITKSSVKKLFFDPNQVNLQTYKRLNS
AVGNKVVLEGVPSYHRQKRIIKNEHEIQLLKKSQALNVEAFENFAEYVKKIFDEKESL
SERYLQHKVKDFLTKEGVYDLSFEPILALNANASKPHALPSAKDFLKADHSILLDMGI
KYERYCSDRTRTAFFDPKDFVFKREQSFKDKERQKIYDIVKEAQEKAILGIRAGMTGK
EADSLARGVISDYGYGQYFTHSTGHGIGLDIHELPYISSRSETILEEGMVFSVEPGIY
IPGFFGVRIEDLVVIKNSRAELL"
misc_feature 410540..411559
/locus_tag="hp2018_0417"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:30356"
misc_feature 410873..411538
/locus_tag="hp2018_0417"
/note="Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline; Region: APP-like; cd01092"
/db_xref="CDD:29977"
misc_feature order(411077..411079,411131..411133,411164..411166,
411389..411391,411476..411478,411518..411520)
/locus_tag="hp2018_0417"
/note="active site"
/db_xref="CDD:29977"
gene 411559..412050
/locus_tag="hp2018_0418"
/db_xref="GeneID:12371617"
CDS 411559..412050
/locus_tag="hp2018_0418"
/EC_number="2.7.6.3"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_005791240.1"
/db_xref="GI:385231321"
/db_xref="GeneID:12371617"
/translation="MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKNCF
LYFKNHSRIGKIFSSPIYINPPFGYTNQPNFYNATIILKTSLSLRHFFALVFYIERRF
GRARKRDFKDAPRTLDIDVIAFNQVILRQDDLTLPHPKWSERDSVLVPLTLQQILFKK
GEW"
misc_feature 411631..412011
/locus_tag="hp2018_0418"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:29601"
misc_feature order(411646..411648,411748..411753,411757..411759,
411781..411783,411787..411789,411832..411834,
411844..411846,411853..411855,411868..411870,
411874..411876,411892..411894,411901..411903,
411910..411912,411916..411921,411961..411963,
411970..411975,411988..411990,411994..411996)
/locus_tag="hp2018_0418"
/note="catalytic center binding site [active]"
/db_xref="CDD:29601"
misc_feature order(411832..411834,411844..411846,411853..411855,
411868..411870,411874..411876,411901..411903,
411916..411921,411961..411963,411970..411975,
411988..411990)
/locus_tag="hp2018_0418"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29601"
gene 412047..413414
/gene="flhF"
/locus_tag="hp2018_0419"
/db_xref="GeneID:12371618"
CDS 412047..413414
/gene="flhF"
/locus_tag="hp2018_0419"
/codon_start=1
/transl_table=11
/product="Flagellar biosynthesis protein"
/protein_id="YP_005791241.1"
/db_xref="GI:385231322"
/db_xref="GeneID:12371618"
/translation="MKFYTYSGETAAEALKIAQSHHGVDTLVFKTQEIRKKTLTSSGL
YEIVVAGGEEENKKAPLIPESLYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQHNYSF
SKNKTLLEKDAPLEDVPLEANKQDALLQALKDEANHKKEREKREVKREEEIKDINAQL
SKIRDSLKLIQNMFWDEKNPNSVNIPQEFAEIYKLAKQSGMKSSHLDEIMQLSLELMP
LRMRENSVTIKRYFREVLRKMILCRPEDLNLRQKRILMLVGPTGVGKTTTLAKLAARY
SRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEYCDF
ILVDTTGHSQYDKEKIAGLKEFIDGGYNIDVSLVLSVTTKYEDMKDIYDSFGVLGIDT
LIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVDCMLDGFSNP
NKEQA"
misc_feature 412047..413408
/gene="flhF"
/locus_tag="hp2018_0419"
/note="flagellar biosynthesis regulator FlhF; Validated;
Region: flhF; PRK05703"
/db_xref="CDD:180213"
misc_feature 412806..413312
/gene="flhF"
/locus_tag="hp2018_0419"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene 413411..414295
/gene="ylxH"
/locus_tag="hp2018_0420"
/db_xref="GeneID:12371619"
CDS 413411..414295
/gene="ylxH"
/locus_tag="hp2018_0420"
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
/protein_id="YP_005791242.1"
/db_xref="GI:385231323"
/db_xref="GeneID:12371619"
/translation="MNNQASHLDNFMNAKNPKSFFDNKGNTKFIAITSGKGGVGKSNI
SANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTHKNILHALKGEAKLQEIICEIEP
GLCLIPGDSGEEILKYISGAEALDRFVDEEGVLSSLDYIVIDTGAGIGVTTQAFLNAS
DCVVIVTTPDPSAITDAYACIKINSKNKDELFLIANMVAQPKEGRATYERLFKVAKNN
IASLELHYLGAIENSSLLKRYVRERKILRKIAPNDLFSQSIDQIASLLVSKLETGTLE
IPKEGLKSFFKRLLKYLG"
misc_feature 413486..414286
/gene="ylxH"
/locus_tag="hp2018_0420"
/note="Antiactivator of flagellar biosynthesis FleN, an
ATPase [Cell motility]; Region: flhG; COG0455"
/db_xref="CDD:30803"
misc_feature 413495..>413662
/gene="ylxH"
/locus_tag="hp2018_0420"
/note="FleN is a member of the Fer4_NifH superfamily. It
shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the number
of flagella and chemotactic motility by...; Region:
FleN-like; cd02038"
/db_xref="CDD:73301"
misc_feature 413513..413536
/gene="ylxH"
/locus_tag="hp2018_0420"
/note="P-loop; other site"
/db_xref="CDD:73301"
misc_feature <413822..414103
/gene="ylxH"
/locus_tag="hp2018_0420"
/note="FleN is a member of the Fer4_NifH superfamily. It
shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the number
of flagella and chemotactic motility by...; Region:
FleN-like; cd02038"
/db_xref="CDD:73301"
gene 414300..414614
/locus_tag="hp2018_0421"
/db_xref="GeneID:12371620"
CDS 414300..414614
/locus_tag="hp2018_0421"
/codon_start=1
/transl_table=11
/product="Motility integral membrane protein"
/protein_id="YP_005791243.1"
/db_xref="GI:385231324"
/db_xref="GeneID:12371620"
/translation="MKVQNFIHFSVVVGFFLGLVFSVLKFNEPESILLWTVLSTLGGY
LIALLFASIFIACTDLDICLFDKKGTEESLLRFNHEFKNREKEVASILNYIRNYDFDD
GK"
gene 414616..415359
/locus_tag="hp2018_0422"
/db_xref="GeneID:12371621"
CDS 414616..415359
/locus_tag="hp2018_0422"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor of flagellar operon"
/protein_id="YP_005791244.1"
/db_xref="GI:385231325"
/db_xref="GeneID:12371621"
/translation="MPKGIQKTEASEKSIEKVLNAYDKQQHHHQDALAIQYLPAVRAM
AFRLKERLPSSIDFNDLVSIGTEELIKLARRYESALNDSFWGYAKTRVNGAMLDYLRS
LDVISRSSRKLIKSIDIEITKYLNEHGEEPSDAYLAEVLGENIEKIREAKTASDIYAL
VPIDEQFNAIEQDEITQKIEAEELLEHVQKVLNQMSEREQILIQLYYFEELNLSEIKE
ILGITESRISQIIKEVIKKVRQSLGVDHG"
misc_feature 414676..415353
/locus_tag="hp2018_0422"
/note="flagellar biosynthesis sigma factor; Validated;
Region: fliA; PRK06986"
/db_xref="CDD:180784"
misc_feature 414712..414927
/locus_tag="hp2018_0422"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 415168..415332
/locus_tag="hp2018_0422"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(415201..415203,415231..415233,415249..415254,
415282..415284,415288..415293,415297..415305,
415309..415314,415318..415320)
/locus_tag="hp2018_0422"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 415352..416416
/gene="fliM"
/locus_tag="hp2018_0423"
/db_xref="GeneID:12371622"
CDS 415352..416416
/gene="fliM"
/locus_tag="hp2018_0423"
/codon_start=1
/transl_table=11
/product="Flagellar motor switch protein"
/protein_id="YP_005791245.1"
/db_xref="GI:385231326"
/db_xref="GeneID:12371622"
/translation="MADILSQEEIDALLEVVDENVDIQNVQKKDIIPQRSVTLYDFKR
PNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPT
SFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQNREFSDIELNLLDTILRQ
VMQILKEVWSPVVEMYPTIDAKESSANVVQIVAQNEISIMVVLEIIIGHSRGMMNICY
PVISIESILSKMGSRDFMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEML
DLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEIL
EMLEEQRRGKVGDIMKIEEE"
misc_feature 415352..416359
/gene="fliM"
/locus_tag="hp2018_0423"
/note="flagellar motor switch protein FliM; Validated;
Region: fliM; PRK06666"
/db_xref="CDD:235849"
misc_feature 416099..416329
/gene="fliM"
/locus_tag="hp2018_0423"
/note="Surface presentation of antigens (SPOA); Region:
SpoA; pfam01052"
/db_xref="CDD:201573"
gene 416420..417277
/gene="fliN1"
/locus_tag="hp2018_0424"
/db_xref="GeneID:12371623"
CDS 416420..417277
/gene="fliN1"
/locus_tag="hp2018_0424"
/codon_start=1
/transl_table=11
/product="Flagellar motor switch protein"
/protein_id="YP_005791246.1"
/db_xref="GI:385231327"
/db_xref="GeneID:12371623"
/translation="MQDFIKIFIQEVVSTLEGLVGKAPSVGLEKEVSNNEEASLISVP
YARVKISAIEKNESPIELLAPVDLVTALSDLMLGGEGASKEEMDNDDLDAFKEMASNI
FGAIATSLKSQELLPKLNFTTTNAEIAKDLPKKEDYAKAVVFSFKMEAIKESQIVLLI
TSAFEGQFEKTHKEEKEETTKSATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQ
KKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITDIGTK
KERLEQLKN"
misc_feature 416420..417274
/gene="fliN1"
/locus_tag="hp2018_0424"
/note="flagellar motor switch protein FliY; Validated;
Region: PRK08432"
/db_xref="CDD:181422"
misc_feature 417020..417250
/gene="fliN1"
/locus_tag="hp2018_0424"
/note="flagellar motor switch protein FliN; Region: fliN;
TIGR02480"
/db_xref="CDD:131533"
gene 417306..417842
/locus_tag="hp2018_0425"
/db_xref="GeneID:12371624"
CDS 417306..417842
/locus_tag="hp2018_0425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791247.1"
/db_xref="GI:385231328"
/db_xref="GeneID:12371624"
/translation="MAIFGELSSLGHLFKKTQELEILHGYLQDVMQKDSGANQRILNL
APNTEFQAPLGHGIFSIEQSYCLEHAKEGEKGFFESHRQYVDFQLIIKGVEGAKVVDI
NRAVIKTPYNEKRDLIVYEPVSEASFLRLNAGMLAIFLENDAHALRFYGESFEKYREE
PIFKAVVKMPKGLIKLKL"
misc_feature 417339..417827
/locus_tag="hp2018_0425"
/note="Beta-galactosidase, beta subunit [Carbohydrate
transport and metabolism]; Region: EbgC; COG2731"
/db_xref="CDD:32617"
gene 417899..418342
/locus_tag="hp2018_0426"
/db_xref="GeneID:12371625"
CDS 417899..418342
/locus_tag="hp2018_0426"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791248.1"
/db_xref="GI:385231329"
/db_xref="GeneID:12371625"
/translation="MPGVYQTQEFLYMKSSFVEFFEHNGKFYAYGISDVDGSKAKKDK
LNPNPKLRNRSDKGVVFLSDLIKVGERSYKGGKAYNFYDGKTYHVRVTQNSNGDLEFT
SSYDKWGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVLKTLKDSPI"
misc_feature 417902..418339
/locus_tag="hp2018_0426"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4731"
/db_xref="CDD:34346"
gene complement(418363..418815)
/locus_tag="hp2018_0427"
/db_xref="GeneID:12371626"
CDS complement(418363..418815)
/locus_tag="hp2018_0427"
/codon_start=1
/transl_table=11
/product="Ferric uptake regulation protein"
/protein_id="YP_005791249.1"
/db_xref="GI:385231330"
/db_xref="GeneID:12371626"
/translation="MRRLETLESILEHLRMSIKKNGLKNSKQREEVVSVLYRSGTHLS
PEEITHSIRQKDKNTSISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIIC
LHCGKIIEFADPEIEHRQNEVVKKYQAKLISHDMKMFVWCKECQESDD"
misc_feature complement(418366..418764)
/locus_tag="hp2018_0427"
/note="ferric uptake regulator; Provisional; Region: fur;
PRK09462"
/db_xref="CDD:181877"
misc_feature complement(418390..418737)
/locus_tag="hp2018_0427"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(418486..418488,418519..418521,
418525..418527,418546..418548,418690..418692))
/locus_tag="hp2018_0427"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(418594..418638)
/locus_tag="hp2018_0427"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(418414..418416,418465..418467,
418522..418524,418528..418530))
/locus_tag="hp2018_0427"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(418393..418419,418423..418431,
418456..418461,418507..418515))
/locus_tag="hp2018_0427"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(418390..418392,418501..418503,
418510..418512))
/locus_tag="hp2018_0427"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene complement(418975..420150)
/locus_tag="hp2018_0428"
/db_xref="GeneID:12371627"
CDS complement(418975..420150)
/locus_tag="hp2018_0428"
/codon_start=1
/transl_table=11
/product="ATPase"
/protein_id="YP_005791250.1"
/db_xref="GI:385231331"
/db_xref="GeneID:12371627"
/translation="MSLTALLNPTSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYG
PPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRL
NKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCDK
ALALLKKQIESGAKTYLLNNSTGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDG
SYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNA
NPNAINLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGL
LYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN"
misc_feature complement(418978..420144)
/locus_tag="hp2018_0428"
/note="recombination factor protein RarA; Reviewed;
Region: PRK13342"
/db_xref="CDD:183986"
misc_feature complement(419731..420102)
/locus_tag="hp2018_0428"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(419998..420021)
/locus_tag="hp2018_0428"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(419773..419775,419860..419862,
419995..420018))
/locus_tag="hp2018_0428"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(419857..419874)
/locus_tag="hp2018_0428"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(419731..419733)
/locus_tag="hp2018_0428"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(418978..419439)
/locus_tag="hp2018_0428"
/note="MgsA AAA+ ATPase C terminal; Region: MgsA_C;
pfam12002"
/db_xref="CDD:192911"
gene complement(420147..420518)
/gene="hspR"
/locus_tag="hp2018_0429"
/db_xref="GeneID:12371628"
CDS complement(420147..420518)
/gene="hspR"
/locus_tag="hp2018_0429"
/codon_start=1
/transl_table=11
/product="transcriptional repressor of DnaK operon"
/protein_id="YP_005791251.1"
/db_xref="GI:385231332"
/db_xref="GeneID:12371628"
/translation="MYDYDEPLYLISVVAKILGVHPQTLRQYEKEGLIEPSRTDGKMR
LYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDSLNKELQDALQKHSKNN
KTPTKNLNTPTNFYELILFKK"
misc_feature complement(420225..420497)
/gene="hspR"
/locus_tag="hp2018_0429"
/note="Helix-Turn-Helix DNA binding domain of the HspR
transcription regulator; Region: HTH_HspR; cd04766"
/db_xref="CDD:133394"
misc_feature complement(420285..420494)
/gene="hspR"
/locus_tag="hp2018_0429"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature complement(order(420387..420395,420441..420443,
420483..420491))
/gene="hspR"
/locus_tag="hp2018_0429"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133394"
misc_feature complement(order(420234..420239,420246..420248,
420258..420260,420276..420278,420288..420290,
420297..420299,420324..420329,420342..420344,
420351..420353))
/gene="hspR"
/locus_tag="hp2018_0429"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:133394"
gene complement(420528..421394)
/gene="cbpA"
/locus_tag="hp2018_0430"
/db_xref="GeneID:12371629"
CDS complement(420528..421394)
/gene="cbpA"
/locus_tag="hp2018_0430"
/codon_start=1
/transl_table=11
/product="DnaJ-class molecular chaperone"
/protein_id="YP_005791252.1"
/db_xref="GI:385231333"
/db_xref="GeneID:12371629"
/translation="MSKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKTKEAEEK
FKEINAAYEILSDEEKRRQYDQFGDNMFGGQNFSDFARSRSASEDLDDILSSIFGKGG
FSQRFSQNSQGFSGFNFSNFAPENLDITATLNVSVLDTLLGNKKQVSVNNETFSLKIP
IGVEEGEKIRVRNKGKTGRTGRGDLLLQIHIEEDEMYRREKDDIIQIFDLPLKTALFG
GKIEIATWHKTLTLTIPPNTKAMQKFRIKDKGIKNRKTSHVGDLYLQARLILPKTETL
SNELKALLEKEL"
misc_feature complement(420537..421388)
/gene="cbpA"
/locus_tag="hp2018_0430"
/note="chaperone protein DnaJ; Provisional; Region:
PRK14299"
/db_xref="CDD:184613"
misc_feature complement(421224..421379)
/gene="cbpA"
/locus_tag="hp2018_0430"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(421245..421250,421257..421262,
421269..421271,421293..421301))
/gene="cbpA"
/locus_tag="hp2018_0430"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature complement(420579..421013)
/gene="cbpA"
/locus_tag="hp2018_0430"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature complement(order(420867..420869,420939..420941,
420942..420959,421002..421004))
/gene="cbpA"
/locus_tag="hp2018_0430"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature complement(order(420579..420587,420675..420686,
420744..420749,420756..420761))
/gene="cbpA"
/locus_tag="hp2018_0430"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 421562..422812
/locus_tag="hp2018_0431"
/db_xref="GeneID:12371630"
CDS 421562..422812
/locus_tag="hp2018_0431"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791253.1"
/db_xref="GI:385231334"
/db_xref="GeneID:12371630"
/translation="MQYKKNKKRYYHLALGILFCNGLSLKALEIAVKPFGYLGLLYNQ
GTQKNPHSYVGALARLGVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGNP
NNVKPYLSAGDVSDAYIQYANQRFKIALGRFNTDFVDFDWIGGNIQGISVAFKQNSMR
YFGIFMDSMLYNGHQINKEQGNRIATSLNALASYDPVSKRLYVGGEVFVLGTEYRYEN
LKVVPFILTDTRLPLPTQNVLVQVGGKLEYDASLAKGFTSRTLVHGMYQYGNTDAATS
AKNAGLFLIDQTFKYQIFNFGTGFYIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAI
YFANSSVSGYVFLGLKTKRVRLDAMVAFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVY
AYNSKATRKSLGDSSFVFFGKFLF"
gene complement(423057..423914)
/locus_tag="hp2018_0432"
/db_xref="GeneID:12371631"
CDS complement(423057..423914)
/locus_tag="hp2018_0432"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791254.1"
/db_xref="GI:385231335"
/db_xref="GeneID:12371631"
/translation="MFNKTRFTHSKTLLLDIDCVIPNIVRRLLSNKTLPKRFAAYSLQ
EVGVIFLTTQILSIMRKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEGFRSLLK
ALKIALVEKYPLKKGAKIQGEHCFEYEADDIISFYKKKDPNNYVIASMDKDILYSNRG
SHFNLKTNAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHE
LWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNMHQMTHHGVIKLWEPEFKKAFFPKKT
QKPDFKRIS"
misc_feature complement(423126..423890)
/locus_tag="hp2018_0432"
/note="5'-3' exonuclease; Provisional; Region: PRK14976"
/db_xref="CDD:184939"
misc_feature complement(<423450..423815)
/locus_tag="hp2018_0432"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:209904"
misc_feature complement(order(423462..423464,423522..423524))
/locus_tag="hp2018_0432"
/note="putative active site [active]"
/db_xref="CDD:189022"
misc_feature complement(423279..423383)
/locus_tag="hp2018_0432"
/note="Helix-hairpin-helix class 2 (Pol1 family) motifs;
Region: HhH2; smart00279"
/db_xref="CDD:197623"
misc_feature complement(order(423294..423296,423309..423317,
423345..423353))
/locus_tag="hp2018_0432"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:188616"
misc_feature complement(423345..423347)
/locus_tag="hp2018_0432"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:188616"
gene complement(424149..425045)
/locus_tag="hp2018_0433"
/db_xref="GeneID:12371632"
CDS complement(424149..425045)
/locus_tag="hp2018_0433"
/codon_start=1
/transl_table=11
/product="Putative two-component response regulator"
/protein_id="YP_005791255.1"
/db_xref="GI:385231336"
/db_xref="GeneID:12371632"
/translation="MKILIIEDDLALARSISHNLHDLGHFCEIISSISEENKEPYDVI
LVSSKVCTQGRCEHFVRYNSKQIIIMMASHVNEDGVNKPIQAGARDYILKPFKMDELL
RKIQYHKAYQEMTARLGFYENYLDFIHAELPLPKDFSYRPPFIIHAPSQELANAYLLQ
YAKERQMDFSFFSLKDTTWKELYKNKDKLERPFYIMHLEELKKDEQLKLLELARSCPI
VLSYTHKEPLEFPKIVSIECGNKPLSLFSDNTTFLSIQEYEKEAIRHFSSTCTDTELA
NKLGISRKSLWEKRRKYNLPRK"
misc_feature complement(424707..425045)
/locus_tag="hp2018_0433"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:31127"
misc_feature complement(424728..425036)
/locus_tag="hp2018_0433"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(424761..424766,424773..424775,
424830..424832,424905..424907,425022..425027))
/locus_tag="hp2018_0433"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(424905..424907)
/locus_tag="hp2018_0433"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(424881..424883,424887..424892))
/locus_tag="hp2018_0433"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(424758..424766)
/locus_tag="hp2018_0433"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(425067..426287)
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/db_xref="GeneID:12371633"
CDS complement(425067..426287)
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/EC_number="2.7.7.60"
/EC_number="4.6.1.12"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase /2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase"
/protein_id="YP_005791256.1"
/db_xref="GI:385231337"
/db_xref="GeneID:12371633"
/translation="MSLIRVNGEAFELSLESLEEDPFETKETLETLIKQTSVVLLAAG
ESKRFSQTIKKQWLRSHHTPLWLSVYESFKEALDFKEVILVVSELDYVYIQRHYPKIK
LVKGGASRQESVRNALKVIDSAYTLTSDVARGLANMEALKSLFLTLQQTSHYCIAPYL
PCYDTAIYYNEALDREAIKLIQTPQLSHTKTLQSALNQGDFKDESSAILQAFPNSVSY
IEGSKDLHKLTTSGDLKFFTPFFNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFG
LKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIG
FELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL
LVQAHVSMRYKQKL"
misc_feature complement(425070..426197)
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/note="bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional;
Region: ispDF; PRK09382"
/db_xref="CDD:181813"
misc_feature complement(425577..426182)
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/note="CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production; Region:
CDP-ME_synthetase; cd02516"
/db_xref="CDD:133009"
misc_feature complement(order(425607..425609,425892..425900,
425949..425951,425958..425969,426123..426125,
426144..426161,426165..426167))
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/note="substrate binding site; other site"
/db_xref="CDD:133009"
misc_feature complement(order(425619..425624,425634..425645,
425661..425663,425670..425675,425679..425684,
425745..425762,425796..425798,425802..425804,
425826..425828,425889..425891))
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/note="dimer interface; other site"
/db_xref="CDD:133009"
misc_feature complement(425088..425546)
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/note="MECDP_synthase
(2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
encoded by the ispF gene, catalyzes the formation of
2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
biosynthesis; Region: MECDP_synthase; cd00554"
/db_xref="CDD:100025"
misc_feature complement(order(425091..425093,425097..425099,
425103..425105,425142..425150,425157..425162,
425166..425168,425232..425234,425238..425240,
425259..425261,425265..425267,425271..425273,
425382..425387,425391..425396,425400..425402,
425505..425507,425517..425525,425529..425531,
425535..425537,425541..425546))
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100025"
misc_feature complement(order(425424..425426,425520..425522,
425526..425528))
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:100025"
misc_feature complement(order(425151..425159,425232..425243,
425247..425252,425376..425378,425382..425384))
/gene="ispD"
/locus_tag="hp2018_0434"
/gene_synonym="ispF"
/note="CDP-binding sites; other site"
/db_xref="CDD:100025"
gene complement(426309..427739)
/gene="htrA"
/locus_tag="hp2018_0435"
/db_xref="GeneID:12371634"
CDS complement(426309..427739)
/gene="htrA"
/locus_tag="hp2018_0435"
/codon_start=1
/transl_table=11
/product="chaperone protein / Serine protease"
/protein_id="YP_005791257.1"
/db_xref="GI:385231338"
/db_xref="GeneID:12371634"
/translation="MMKKTLFVSLALALSLNAGNIQIQNMPKVKERISVPSKEDTIYS
YHDSIKDSIKAVVNISTEKKIKNNFIGGGVFNDPFFQQFFGDLGGMIPKERMERALGS
GVIISKDGYIVTNNHVIDGADKIKVTIPGSNKEYSATLVGTDSESDLAVIRITKDNLP
TIKFSDSNDILVGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSYENFIQTDASIN
PGNSGGALIDSRGGLVGINTAIISKTGGNHGIGFAIPSNMVKDIVTQLIKTGKIERGY
LGVGLQDLSGDLQNSYDNKEGAVVISVEKDSPAKKAGILVWDLITEVNGKKVKNTNEL
RNLIGSMLPNQRVTLKVIRDKKERTFTLTLAERKNPNKKETISAQNGVQGQLNGLQVE
DLTQKTKRSMRLSDDVQGVLVSQVNENSPAEQAGFRQGNIITKIEEIEVKSVADFNHA
LEKYRGKPKRFLVLDLNQGYRIILVK"
misc_feature complement(426315..427610)
/gene="htrA"
/locus_tag="hp2018_0435"
/note="periplasmic serine protease, Do/DeqQ family;
Region: degP_htrA_DO; TIGR02037"
/db_xref="CDD:162670"
misc_feature complement(427032..427439)
/gene="htrA"
/locus_tag="hp2018_0435"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature complement(426654..426917)
/gene="htrA"
/locus_tag="hp2018_0435"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature complement(order(426735..426740,426747..426752,
426897..426899,426903..426914))
/gene="htrA"
/locus_tag="hp2018_0435"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
misc_feature complement(426348..426566)
/gene="htrA"
/locus_tag="hp2018_0435"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
gene complement(427784..429211)
/locus_tag="hp2018_0436"
/db_xref="GeneID:12371635"
CDS complement(427784..429211)
/locus_tag="hp2018_0436"
/codon_start=1
/transl_table=11
/product="Lysine-specific permease"
/protein_id="YP_005791258.1"
/db_xref="GI:385231339"
/db_xref="GeneID:12371635"
/translation="MEHQNTTQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIA
SAGPLGTLIAYCFGGLVVYCIMLSLGELASVYPTTGSFGDYAAKFIGPGTGYMVFWMY
WLGWVITVALEYIAIGMLMQRWFVNIPIHYWVISCIALVFLLNFFSVKIFAEGEFFFS
LIKVLAVIAFIGIGVIGIVYQIYLHGFSSIFDNFHFGDKGFFPNGSEAVFSAMLAVIF
AFTGTEVIGVAVGETKNASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMNDSSIAQS
PFVSVLERINLPFIGMGIPYVADIMNAVIITAMFSTANSGLYGASRMIYGLSKQKMFF
KVFSQLNRQGTPTYAMFFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSI
SQYSFRKQYLKAGHSLEDLPYKAPFLPFLQLIGITGCIIGVIGSAMDKDQRIGMILTI
VFAVVCYIGYYFTQKANENNKKDLI"
misc_feature complement(427793..429211)
/locus_tag="hp2018_0436"
/note="S-methylmethionine transporter; Provisional;
Region: PRK11387"
/db_xref="CDD:183113"
gene complement(429409..429948)
/locus_tag="hp2018_0437"
/db_xref="GeneID:12371636"
CDS complement(429409..429948)
/locus_tag="hp2018_0437"
/EC_number="2.7.8.5"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase"
/protein_id="YP_005791259.1"
/db_xref="GI:385231340"
/db_xref="GeneID:12371636"
/translation="MKVLKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPFHINMI
SSLVFLFAALTDLLDGYIARSYKAKSRFGEIFDPLADKILILSAFLGLVYLDRVNAWV
PFVILGREFFISGLRVLAANEKKDIPVNALGKYKTVSQVVAIGALLANLTYSYVLVAI
AVFLTLYSGIDYTIKYYKS"
misc_feature complement(429412..429855)
/locus_tag="hp2018_0437"
/note="CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase; Region: pgsA; TIGR00560"
/db_xref="CDD:233024"
gene complement(429945..430553)
/locus_tag="hp2018_0438"
/db_xref="GeneID:12371637"
CDS complement(429945..430553)
/locus_tag="hp2018_0438"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791260.1"
/db_xref="GI:385231341"
/db_xref="GeneID:12371637"
/translation="MKNIIHIHQNKELRFVKKCLLGYFFAPLCGAILLVLFLVSSGAK
SFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITHHLGFFENFAFSFLAVI
LCALLSYLIPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLLFSFMIA
LLGVLAHALGVIFLGVAVILMCVALSFLGRAFLNFSQVFLKA"
gene complement(430563..431333)
/locus_tag="hp2018_0439"
/db_xref="GeneID:12371638"
CDS complement(430563..431333)
/locus_tag="hp2018_0439"
/EC_number="1.1.1.100"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP reductase"
/protein_id="YP_005791261.1"
/db_xref="GI:385231342"
/db_xref="GeneID:12371638"
/translation="MKNKTLVISGATRGIGKAILYRFAQSGVNIAFTYNKNVEEANKI
IEDVEQKYSIKAKAYPLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFA
PFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGH
GNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLK
RMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGGTTFK"
misc_feature complement(430566..431333)
/locus_tag="hp2018_0439"
/note="7-alpha-hydroxysteroid dehydrogenase; Provisional;
Region: PRK08416"
/db_xref="CDD:181417"
misc_feature complement(430578..431312)
/locus_tag="hp2018_0439"
/note="1-cyclohexenylcarbonyl_coenzyme A_reductase
(ChcA)_like, classical (c) SDRs; Region: ChcA_like_SDR_c;
cd05359"
/db_xref="CDD:187617"
misc_feature complement(order(430746..430751,430755..430766,
430842..430844,430854..430856,430893..430901,
430980..430982,431061..431069,431145..431153,
431226..431234,431289..431300,431304..431306))
/locus_tag="hp2018_0439"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187617"
misc_feature complement(order(430842..430844,430854..430856,
430893..430895,430977..430979))
/locus_tag="hp2018_0439"
/note="active site"
/db_xref="CDD:187617"
gene complement(431348..432250)
/gene="dapA"
/locus_tag="hp2018_0440"
/db_xref="GeneID:12371639"
CDS complement(431348..432250)
/gene="dapA"
/locus_tag="hp2018_0440"
/EC_number="4.2.1.52"
/codon_start=1
/transl_table=11
/product="Dihydrodipicolinate synthase"
/protein_id="YP_005791262.1"
/db_xref="GI:385231343"
/db_xref="GeneID:12371639"
/translation="MQFHSSSALITPFKKDLSVDEAAYETLIKRQIFQGMDACVPVGT
TGESATLTHKEHMRCIEIAIETCKSTKTPSNSRMKVLAGVGSNATSESLSLAKFAQKI
GADAILCVSPYYNRPTQQGLFEHYKTIAQSVEIPIMLYDVPSRTGVSIEVPTALKLFR
EVPNIKAIKEASGSLKRVTELHYYEKDFKIFSGEDSLNHSIMFSGGCGVISVTGNLMP
NLISQMVNCALKFEYQQALEIQNKLFDLHQALFVETNPIPIKMAMHLAGLIENPSYRL
PLVAPSKETIKLLEKTLQQYEVIA"
misc_feature complement(431363..432241)
/gene="dapA"
/locus_tag="hp2018_0440"
/note="dihydrodipicolinate synthase; Region: dapA;
TIGR00674"
/db_xref="CDD:129757"
misc_feature complement(431372..432229)
/gene="dapA"
/locus_tag="hp2018_0440"
/note="Dihydrodipicolinate synthase (DHDPS); Region:
DHDPS; cd00950"
/db_xref="CDD:188637"
misc_feature complement(order(431420..431422,431426..431428,
431483..431488,431816..431818,431822..431824,
431909..431917,431984..431986,431990..431992,
432110..432124))
/gene="dapA"
/locus_tag="hp2018_0440"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188637"
misc_feature complement(order(431666..431668,431672..431674,
431744..431746,431816..431818,431831..431833,
432116..432121))
/gene="dapA"
/locus_tag="hp2018_0440"
/note="active site"
/db_xref="CDD:188637"
misc_feature complement(431744..431746)
/gene="dapA"
/locus_tag="hp2018_0440"
/note="catalytic residue [active]"
/db_xref="CDD:188637"
gene complement(432265..433599)
/gene="pqqE"
/locus_tag="hp2018_0441"
/db_xref="GeneID:12371640"
CDS complement(432265..433599)
/gene="pqqE"
/locus_tag="hp2018_0441"
/codon_start=1
/transl_table=11
/product="putative zinc protease"
/protein_id="YP_005791263.1"
/db_xref="GI:385231344"
/db_xref="GeneID:12371640"
/translation="MRYFSVKRLLRRCSVLLVTLGVSMHAQSYLPKHESVTLKNGLQV
VSVPLENKTGVIEVDVLYKVGSRNEVMGKSGIAHMLEHLNFKSTKNLKAGEFDKIVKR
FGGVSNASTSFDITRYFIKTSQANLDKSLELFAETMGSLNLKEDEFLPERQVVAEERR
WRTDNSPIGMLYFRFFNTAYVYHPYHWTPIGFMDDIQNWTLKDIKKFHSLYYQPKNAI
VLVVGDVNSQKVFELTKKHFESLKNLDEKAIPTPYMKEPKQDGARTAVVHKDGVHLEW
VALGYKVPAFKHKDQVALDALSKLLGEGKSSWLQSELVDKKRLASQAFSHNMQLQDES
VFLFIAGGNPNIKAEALQKEIVVLLEKLKKGEITQAELDKIKINQKADFISNLESSSD
VAGLFADYLVQNDLQGLTDYQQQFLDLKVSDLVRVANEYFKDAQSTTVFLKP"
misc_feature complement(432268..433551)
/gene="pqqE"
/locus_tag="hp2018_0441"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature complement(<433123..433422)
/gene="pqqE"
/locus_tag="hp2018_0441"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature complement(432472..433008)
/gene="pqqE"
/locus_tag="hp2018_0441"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene complement(433596..434651)
/gene="pyrD"
/locus_tag="hp2018_0442"
/db_xref="GeneID:12371641"
CDS complement(433596..434651)
/gene="pyrD"
/locus_tag="hp2018_0442"
/EC_number="1.3.98.1"
/codon_start=1
/transl_table=11
/product="Dihydroorotate dehydrogenase"
/protein_id="YP_005791264.1"
/db_xref="GI:385231345"
/db_xref="GeneID:12371641"
/translation="MLYSLVKKYLFSLDAEIAHEKVCQILRTLSRSSFLCSLIHSQWG
YKNPKLENEILGLNFPNPLGLAAGFDKNASMLRALIAFGFGYLEAGTLTNIAQSGNEK
PRLFRHIEEESLQNAMGFNNYGAILGVRAFKRFAPYKTPIGINLGKNKHIEQAHALED
YKAVLNQCLNIGDYYTFNLSSPNTPNLRDLQNKAFVNELFCMAKEMTHKPLFLKIAPD
LETDDMLEIVNSAIEAGANGIIATNTTIDKSLVFAPKEMGGLSGKCLTKKSREIFKEL
AKAFFNKSVLVSVGGISDAKEAYERIKMGASLLQIYSAFIYNGPNLCQNILKDLVKLL
QKDGFLSVKEAIGADLR"
misc_feature complement(433659..434645)
/gene="pyrD"
/locus_tag="hp2018_0442"
/note="dihydroorotate dehydrogenase, subfamily 2; Region:
pyrD_sub2; TIGR01036"
/db_xref="CDD:200068"
misc_feature complement(433662..434633)
/gene="pyrD"
/locus_tag="hp2018_0442"
/note="Dihydroorotate dehydrogenase (DHOD) class 2. DHOD
catalyzes the oxidation of (S)-dihydroorotate to orotate.
This is the fourth step and the only redox reaction in the
de novo biosynthesis of UMP, the precursor of all
pyrimidine nucleotides. DHOD requires...; Region:
DHOD_2_like; cd04738"
/db_xref="CDD:73400"
misc_feature complement(order(434331..434333,434595..434597))
/gene="pyrD"
/locus_tag="hp2018_0442"
/note="quinone interaction residues [chemical binding];
other site"
/db_xref="CDD:73400"
misc_feature complement(order(433713..433718,433779..433781,
433866..433868,433920..433928,434010..434012,
434103..434105,434109..434111,434118..434120,
434292..434300,434304..434306,434379..434381,
434439..434441,434451..434453))
/gene="pyrD"
/locus_tag="hp2018_0442"
/note="active site"
/db_xref="CDD:73400"
misc_feature complement(order(434010..434012,434109..434111,
434439..434441))
/gene="pyrD"
/locus_tag="hp2018_0442"
/note="catalytic residues [active]"
/db_xref="CDD:73400"
misc_feature complement(order(433713..433718,433779..433781,
433866..433868,433923..433928,434010..434012,
434118..434120,434304..434306,434379..434381))
/gene="pyrD"
/locus_tag="hp2018_0442"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73400"
misc_feature complement(order(433920..433925,434112..434114,
434118..434120,434304..434306))
/gene="pyrD"
/locus_tag="hp2018_0442"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73400"
gene complement(434689..436716)
/gene="ppk"
/locus_tag="hp2018_0443"
/db_xref="GeneID:12371642"
CDS complement(434689..436716)
/gene="ppk"
/locus_tag="hp2018_0443"
/EC_number="2.7.4.1"
/codon_start=1
/transl_table=11
/product="polyphosphate kinase"
/protein_id="YP_005791265.1"
/db_xref="GI:385231346"
/db_xref="GeneID:12371642"
/translation="MNRFFNRELSWLAFNTRVLNEAKDENLPLLERLKFLAIYDTNLD
EFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIKHYLAHEIEERELEFQKIQALLF
KKGLCITPYNELNLEQKAKAKTYFKEQLYALVLPFKLDSSHTFPPLANLTFALFAHIK
DKETQSASYALIKLPSFIFRFVELEKGLFALAEEIVEAHLEELFLEHEILDCMAFRVT
CDADIAITEDEAHDYADLMSKSLRKRNQGEIVRLQTQKGSQELLKTLLASLRSFQTHS
YKKHKLTGMHIYKSAIMLNLGDLWELVNHSDFKTLKSPNFTPKIHPHFNENDLFKSIE
KQDLLLFHPYESFEPVIDLIEQAASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQV
SVLVELKARFDEESNLHWAKALERAGALVVYGVFKLKVHAKMLVITKKTDNQLRHFTH
LSTGNYNPLSAKIYTDVSFFSAKNEIANDIIKLFHSLLTSSATSNTLETLFMAPKQIK
PKIIELIQNEMNHKQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRGICCLKPQ
VKGLSENIRVYSIVGKYLEHARIYYFKHENIYFSSADLMPRNLERRVELLIPATNPKI
ANKLLHILEIQLKDTLKRYELNSKGRYAKVSNPNDPLNSQDYFEKQALKTL"
misc_feature complement(434698..436713)
/gene="ppk"
/locus_tag="hp2018_0443"
/note="polyphosphate kinase; Provisional; Region:
PRK05443"
/db_xref="CDD:180085"
misc_feature complement(436393..436710)
/gene="ppk"
/locus_tag="hp2018_0443"
/note="Polyphosphate kinase N-terminal domain; Region:
PP_kinase_N; pfam13089"
/db_xref="CDD:205270"
misc_feature complement(435745..436368)
/gene="ppk"
/locus_tag="hp2018_0443"
/note="Polyphosphate kinase middle domain; Region:
PP_kinase; pfam02503"
/db_xref="CDD:202263"
misc_feature complement(435262..435735)
/gene="ppk"
/locus_tag="hp2018_0443"
/note="Catalytic C-terminal domain, first repeat, of
Pseudomonas aeruginosa polyphosphate kinase 1 and similar
proteins; Region: PLDc_PaPPK1_C1_like; cd09165"
/db_xref="CDD:197262"
misc_feature complement(order(435262..435264,435268..435273,
435277..435282,435289..435294,435298..435300,
435310..435312,435316..435336,435358..435366,
435415..435417,435421..435438,435661..435663,
435670..435672,435676..435690,435694..435705,
435721..435726,435733..435735))
/gene="ppk"
/locus_tag="hp2018_0443"
/note="putative domain interface [polypeptide binding];
other site"
/db_xref="CDD:197262"
misc_feature complement(order(435319..435321,435325..435327,
435352..435354,435358..435360,435418..435420,
435424..435426,435514..435516,435601..435606))
/gene="ppk"
/locus_tag="hp2018_0443"
/note="putative active site [active]"
/db_xref="CDD:197262"
misc_feature complement(435424..435426)
/gene="ppk"
/locus_tag="hp2018_0443"
/note="catalytic site [active]"
/db_xref="CDD:197262"
misc_feature complement(434758..435213)
/gene="ppk"
/locus_tag="hp2018_0443"
/note="Catalytic C-terminal domain, second repeat, of
Pseudomonas aeruginosa polyphosphate kinase 1 and similar
proteins; Region: PLDc_PaPPK1_C2_like; cd09168"
/db_xref="CDD:197265"
misc_feature complement(order(434875..434877,434881..434883,
434908..434910,434914..434916,434953..434955,
434959..434961,434965..434967,435043..435045))
/gene="ppk"
/locus_tag="hp2018_0443"
/note="putative active site [active]"
/db_xref="CDD:197265"
misc_feature complement(order(434824..434826,434833..434838,
434845..434850,434857..434859,434866..434868,
434872..434886,434914..434922,434950..434970))
/gene="ppk"
/locus_tag="hp2018_0443"
/note="putative domain interface [polypeptide binding];
other site"
/db_xref="CDD:197265"
misc_feature complement(434959..434961)
/gene="ppk"
/locus_tag="hp2018_0443"
/note="catalytic site [active]"
/db_xref="CDD:197265"
gene complement(436810..436888)
/locus_tag="hp2018_t12"
/db_xref="GeneID:12371643"
tRNA complement(436810..436888)
/locus_tag="hp2018_t12"
/product="tRNA-Pro"
/db_xref="GeneID:12371643"
gene complement(437395..438291)
/locus_tag="hp2018_0444"
/db_xref="GeneID:12371644"
CDS complement(437395..438291)
/locus_tag="hp2018_0444"
/EC_number="3.1.21.3"
/codon_start=1
/transl_table=11
/product="Type I restriction-modification system
specificity subunit S"
/protein_id="YP_005791266.1"
/db_xref="GI:385231347"
/db_xref="GeneID:12371644"
/translation="MGLVPNKKIYFEFLYYLLKYHKDNISNMGVGTTFKGISKPALGL
FQVKIPPTYYEQQKIARTLSVLDQKIENNHKINELLHKILELLYEQYFVRFDFSDENN
KPYQTSGGKMKFSKELNRLIPNGWSVRFLNHKIVSTYQPKTISKTLLNDSYSYSVYGG
GGIIGRFTEYNHEQSEFIISCRGQCGISYLTLPKSWITGNAMVIRPTKSYTSKTYLYH
TIKKYKLTNYITGSVQPQITRQNLSTMPILIPKRKILNKWNNISSLLWNLIHSNMQST
QTLTVLRDFLLPLLLKQQVKPQ"
misc_feature complement(437461..>438285)
/locus_tag="hp2018_0444"
/note="Restriction endonuclease S subunits [Defense
mechanisms]; Region: HsdS; COG0732"
/db_xref="CDD:31076"
misc_feature complement(438046..>438276)
/locus_tag="hp2018_0444"
/note="Type I restriction modification DNA specificity
domain; Region: Methylase_S; pfam01420"
/db_xref="CDD:201785"
gene complement(438408..439553)
/gene="hsdM"
/locus_tag="hp2018_0445"
/db_xref="GeneID:12371645"
CDS complement(438408..439553)
/gene="hsdM"
/locus_tag="hp2018_0445"
/codon_start=1
/transl_table=11
/product="type I restriction enzyme M protein"
/protein_id="YP_005791267.1"
/db_xref="GI:385231348"
/db_xref="GeneID:12371645"
/translation="MPNNALLQIKQDTLSLIDDLKVICTSFGLGNDGNEYKIITQCFL
YKFLCDKFEFFFEQEFPNKTIRDYKDFNGEEKEDFFLTLSDKQLPKLAYDELLNYLFE
KHFNDNDLHLKLDAIFNRISSNNAKLFNTKSTDKTTIALFESVSQYINEESKRANFTR
ALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYYTPLSIASI
IAKLLVIKPTQSVKIYDPSAGTGTLLMALAHQIGTDSCTLYAQDISQKSLRMLKLNLI
LNDLTHSLRYAIEGNTLTNPYHSKDHKGKMDFIVSNPPFKLDFSNEHAEISQNKNDFF
LGVPNIPKNDKSKMPIYTLFFQHCLNMLSPKGKGAIIVPTGFISAKS"
misc_feature complement(<438411..439523)
/gene="hsdM"
/locus_tag="hp2018_0445"
/note="Type I restriction-modification system
methyltransferase subunit [Defense mechanisms]; Region:
HsdM; COG0286"
/db_xref="CDD:30634"
misc_feature complement(438432..438860)
/gene="hsdM"
/locus_tag="hp2018_0445"
/note="Methyltransferase domain; Region: Methyltransf_26;
pfam13659"
/db_xref="CDD:205836"
gene complement(439546..441828)
/locus_tag="hp2018_0446"
/db_xref="GeneID:12371646"
CDS complement(439546..441828)
/locus_tag="hp2018_0446"
/EC_number="3.1.21.3"
/codon_start=1
/transl_table=11
/product="Type I restriction-modification system
restriction subunit R"
/protein_id="YP_005791268.1"
/db_xref="GI:385231349"
/db_xref="GeneID:12371646"
/translation="MFASLNVLKELQKHYETNPKDPLKGIIWHTQGSGKTALTYHLTK
LIRDFFSQSNLNKKTKFYFIVDRLDLLEQAKNEFSRRGLCVYEAESKEDLSQKLKNSR
VFEGPQGNDEIIVVNIQKFKSPNEEKAPNEDFSNSAPKEIISKTELQEATKDNHDLQR
VFIIDEAHRSYDPKGCFYANLIECDKTAIKIALTGTPLLEDNAQDKATKKTFGNYLHT
YSYAESIKDRHTLKLQLEIIEKSYKEKLQAIYRLLQESITIEDVEVKKETIFNHERYI
KEMLYYIIRDLLNFRRVNNDENLKAMVICFSSEQAKLANSLFNEVQEKVLQENPNLRI
LKKLQSSLILHDEQEVKEKIYSFKHKDTDIVFVFNMLLTGFDLPNLKRLYIHRELKDH
NLLQALARVNRPYNNMSFGYLIDFVGIKENYDKTTDDYLKELNQFNQGDFNIKDNLKD
MFADRKVLEKDIKNAYDDLFNYPIDDIEDMTSAIVNISGMNELLKVSHAINTLKINYN
LIRTSSDEKILSLKEKMDIEKISKISSMLGKKAKQLHALKNINEPKNPNDLMILEDLI
ALLDFKIEFKESKELHFKEREEISAKYKQAKEMLEKIPDKQDKEVQKISKDLSKLIQE
PLTNDNFDGISHSYSTLISQLQQHKEQTTNLLNKYNNDRAYVITHKRLHNRLMEENIS
KGIFTLLITLKKALDARISKRQEILNEEATLKTAIKVELRDAFKENPSLKDLQKEEKF
IAQTLFNELTQNHHQGNLNA"
misc_feature complement(439618..>441828)
/locus_tag="hp2018_0446"
/note="Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms]; Region: COG0610"
/db_xref="CDD:30955"
misc_feature complement(<441604..441810)
/locus_tag="hp2018_0446"
/note="Type III restriction enzyme, res subunit; Region:
ResIII; pfam04851"
/db_xref="CDD:203105"
misc_feature complement(441238..>441351)
/locus_tag="hp2018_0446"
/note="Type III restriction enzyme, res subunit; Region:
ResIII; pfam04851"
/db_xref="CDD:203105"
gene complement(442025..442681)
/gene="hsdR"
/locus_tag="hp2018_0447"
/db_xref="GeneID:12371647"
CDS complement(442025..442681)
/gene="hsdR"
/locus_tag="hp2018_0447"
/codon_start=1
/transl_table=11
/product="type I restriction enzyme R protein"
/protein_id="YP_005791269.1"
/db_xref="GI:385231350"
/db_xref="GeneID:12371647"
/translation="MPYNEITRVQVPALMHLAKLGYNFISQKNKPNLDTATNILTDSF
TQAFERLNPNPTKNAKDVLAEMKKRLNYDDLGKSFYEYLLKSEHQIIDFDNPNNNLYE
MMTELPYKSLRTDITLFINGLPLVNIEVKQPFAEKGITEEKVRHIQRYENPENKVFYN
LVQIWLFSDNLPYDEKNPDQGVFYSTSYSPIFQRFVEANRLDITPPPKLSKPSKPQIA
"
misc_feature complement(442169..442678)
/gene="hsdR"
/locus_tag="hp2018_0447"
/note="Type I restriction enzyme R protein N terminus
(HSDR_N); Region: HSDR_N; pfam04313"
/db_xref="CDD:202969"
misc_feature complement(<442070..442675)
/gene="hsdR"
/locus_tag="hp2018_0447"
/note="Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms]; Region: COG0610"
/db_xref="CDD:30955"
gene complement(442729..444624)
/locus_tag="hp2018_0448"
/db_xref="GeneID:12371648"
CDS complement(442729..444624)
/locus_tag="hp2018_0448"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791270.1"
/db_xref="GI:385231351"
/db_xref="GeneID:12371648"
/translation="MPFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTP
FKNYQLLFETNHFNLLHTPTNALSYPKHQMIETAFNMASNPLNNPRWSLDNNHLSLHY
LKSQNNHKLPLTLKATHAISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY
RFHSLYLFEENLDLFKISCYFARYEDLIKKGAKLFIQGFFNPNELKMDFLKRPVTHSF
LKLEIMPYKSAFNLRMRENIQSYYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKP
KKINAPICVVGNGPSLDLLLDFLKENEEKFIIFSCGTALKPLKAHGVKVDFQIEVERI
DYLKEVLENAPLEDTPLMGANMLNPNAFNLAKEALMFMRGGSACTYISPLSIEYAAPF
VGNAGVALAGLMSDEIYLCALDCAYIKGFKKHAKNSYYGDEKEIDTSSLISIEGNFKG
YETFSDSLFLLSKERIEEALHYYQPKKVYNLSYGAKIKHAVSLNHSQVKLKQTNKQDA
TARIKSMFNPPNNHAKDLNNLQKNLMSFKEDFLKYLNTPCKTKQEIFEWVDNLNGFCQ
TASAKTPTIGILFEGSIAHILQSVLIVSLHLNENELTHFINHSQNTLKQFLKKACLLL
QRQLKQP"
misc_feature complement(442732..444588)
/locus_tag="hp2018_0448"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2604"
/db_xref="CDD:32596"
gene complement(444649..445416)
/locus_tag="hp2018_0449"
/db_xref="GeneID:12371649"
CDS complement(444649..445416)
/locus_tag="hp2018_0449"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791271.1"
/db_xref="GI:385231352"
/db_xref="GeneID:12371649"
/translation="MEIILLIIAAVVLFYFYNTLKEYLKNPLNPKTKTEEYDLKNDPY
LLVQSSPLDKFKQTQTGAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSEQQNLAK
ELLNEPVDKKENFESLCQEIADHTHGEYTKRLKLVEFLMLLAYADGILDSKEKELFLD
VGAFLQIDNQDFNELYDNFERFNAIEIPMSLEEAKSLFEIQTTTTKQDLEKKALDLSA
PYYHKMNDNKRYSEQDFISLKKIALASQILEKDLKDS"
misc_feature complement(444919..>445149)
/locus_tag="hp2018_0449"
/note="N-terminal tellurium resistance protein terB-like
domain of heat shock DnaJ-like proteins; Region:
terB_like_DjlA; cd07316"
/db_xref="CDD:143585"
misc_feature complement(order(444955..444957,444976..444978))
/locus_tag="hp2018_0449"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:143585"
gene complement(445426..445740)
/locus_tag="hp2018_0450"
/db_xref="GeneID:12371650"
CDS complement(445426..445740)
/locus_tag="hp2018_0450"
/codon_start=1
/transl_table=11
/product="Integral membrane protein"
/protein_id="YP_005791272.1"
/db_xref="GI:385231353"
/db_xref="GeneID:12371650"
/translation="MNAFLKLAFASFMGGLWYAFNGEGSEVVAIGIFLLILFVFFIRP
VSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK
YS"
gene complement(445742..447229)
/locus_tag="hp2018_0451"
/db_xref="GeneID:12371651"
CDS complement(445742..447229)
/locus_tag="hp2018_0451"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791273.1"
/db_xref="GI:385231354"
/db_xref="GeneID:12371651"
/translation="MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLK
GVSYNENIALKINQIAVFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKEVLKN
YEDFFKQVPYITKGEKEELEKFIQINFINPQINPKYLGDGFFLYVKWLMKRYPTERDR
LLEMISQPESGVMNFLSVAHYLYKNDDNIDHEIYELQEMLTNSKIKPWKDFSKNLLSL
FQYNSNPPKTPNPPKTCALFNAYAKHLNAQALLKSAKFYLEKMGQKVIDLPFCYDGGY
YGKIISTHDFLTASAYNLALAKANGVSLIFCEEDSYLNILHAKEVLDNNPEIIDSVNE
KLKKYQLVYEKDIEMAYLNEWVNEFLAWELKSPFGAFLGAEFSRIKRSDHFFHKIHLK
SPNFLESFQNYAPLLEVNETNGLLQCAHLRYLGIDLGADFLITHSLGLFHAFENLSLK
ASKIYKRDNDNTPTLLLPQIALMAMGEKDKQALGLDTHYHKVTFI"
misc_feature complement(445766..446524)
/locus_tag="hp2018_0451"
/note="Heterodisulfide reductase, subunit B [Energy
production and conversion]; Region: HdrB; COG2048"
/db_xref="CDD:32231"
gene complement(447241..447729)
/locus_tag="hp2018_0452"
/db_xref="GeneID:12371652"
CDS complement(447241..447729)
/locus_tag="hp2018_0452"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791274.1"
/db_xref="GI:385231355"
/db_xref="GeneID:12371652"
/translation="MQRELRLLNNKHCIEYLQFLSKNHLSFNLLCERDAIDFSPKLPK
EIHEKFGSLVLFVLAGYTLESLMIDAQSVQFEAGFGPNNIGSVVQVKLPGIIQILIKE
KNENVVLFNRCDSLELFQKEEPLMQEPKKDERESKEWLDSKEALFSNSKNRTILENLH
KS"
gene complement(447714..449450)
/locus_tag="hp2018_0453"
/db_xref="GeneID:12371653"
CDS complement(447714..449450)
/locus_tag="hp2018_0453"
/codon_start=1
/transl_table=11
/product="Oligoendopeptidase F"
/protein_id="YP_005791275.1"
/db_xref="GI:385231356"
/db_xref="GeneID:12371653"
/translation="MKEQEWDLSALFENKESAEEFLKTLQTEAQEFESAYQNNLKDLD
ATKFADALKHYENLLEKISRAMTYAQLLFAKNTKEAKFYSQCEMACANIQQHLLFFEI
EFKNLDAKKQLAFIKKCKDHAFYLNNLIEKKKHTLNLDEEKIALALSPVGVGAFSRLF
DEHFSSLKIPFEEKTLSEEEILALLHNPKRKIRKKSQKAFSKALEKSRPLLTYILNMV
RKDLLIETKLRKYDKKESFRHIDNQISQESVDSMIEIVNANFSLVHRYYHQKAQILGH
KLKDYDRYAPLNNESITMTYSQALEEVLKTLKAFSPEFYKIASKAIKEGWVDSHPKDF
KQGGAFSHGAVPSAHPYVLLNYTGNRRDAFTIAHEFGHMIHQELSKKQGVLNMDTPLT
TAETASVFSEMLFFEHLKKGLKSDELLFMLAGKLEDIFSTLFRQVVMTNFERRIHEMD
EELDTKDFDRIWFEENQRMFEKSVKLTKNYHLWWSYIPHFIHSPFYCYAYSYGQLLTL
ALYGLYKKSDAKQFVKTYTEFLSLGGSKSPKELVSMFGFDIDNKEFWEIGMQEVRHLL
EEFERLLACKEN"
misc_feature complement(447735..449438)
/locus_tag="hp2018_0453"
/note="oligoendopeptidase, pepF/M3 family; Region:
M3_fam_3; TIGR02290"
/db_xref="CDD:162797"
misc_feature complement(447762..449162)
/locus_tag="hp2018_0453"
/note="Peptidase family M3B Oligopeptidase F (PepF);
Region: M3B_PepF_5; cd09610"
/db_xref="CDD:189017"
misc_feature complement(order(447951..447953,447963..447965,
447984..447986,448266..448268,448335..448337,
448344..448349))
/locus_tag="hp2018_0453"
/note="active site"
/db_xref="CDD:189017"
misc_feature complement(order(448266..448268,448335..448337,
448347..448349))
/locus_tag="hp2018_0453"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:189017"
gene complement(449548..450798)
/gene="kefB"
/locus_tag="hp2018_0454"
/db_xref="GeneID:12371654"
CDS complement(449548..450798)
/gene="kefB"
/locus_tag="hp2018_0454"
/codon_start=1
/transl_table=11
/product="Glutathione-regulated potassium-efflux system
protein"
/protein_id="YP_005791276.1"
/db_xref="GI:385231357"
/db_xref="GeneID:12371654"
/translation="MENSTLYIVIAGLWLAVGFGIFLKKLDMPVIIGYICTGTVLAAF
FKINDFNLLSDIGEFGIVFLMFMIGIEFNFDKLKSIKQEVLVFGLLQVVLCALIAFLL
GYFVLGLSPIFSLVLGMGLSLSSTAIVLKFFEDSKQLSTPMGKSAVGILIFQDIAAIP
MLLILTILGSKDSHVNLLILKTLISAGIILVLLLLPGKKGANLILEQAKDTRLPEIFI
GTILVIVCSAAGLSHFFGFSMSLGAFIVGMAISKSRYKINVQEEFAQLKNLFLALFFI
TIGMQINVSFFMEKFFVVIFLLILVMSFKTFIIYALLCFFRDAKTAIKTALSLAQIGE
FSFVIFLNSGSHQLFNLQEKKGILGFLHQKNILNIAQNDIHQLLILMVVFSMLATPFI
LKYLESIAQFILHQKSQENEPAKK"
misc_feature complement(449560..450798)
/gene="kefB"
/locus_tag="hp2018_0454"
/note="Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: KefB;
COG0475"
/db_xref="CDD:30823"
misc_feature complement(449782..450774)
/gene="kefB"
/locus_tag="hp2018_0454"
/note="Sodium/hydrogen exchanger family; Region:
Na_H_Exchanger; pfam00999"
/db_xref="CDD:201544"
gene complement(451119..451679)
/locus_tag="hp2018_0455"
/db_xref="GeneID:12371655"
CDS complement(451119..451679)
/locus_tag="hp2018_0455"
/codon_start=1
/transl_table=11
/product="putative Outer membrane protein"
/protein_id="YP_005791277.1"
/db_xref="GI:385231358"
/db_xref="GeneID:12371655"
/translation="MIKRIACILSLSASLALAGEVNGFFMGAGYQQGRYGPYNSNYSD
WRHGNDLYGLNFKLGFVGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDLIV
NLIPLDKFALGLIGGVQLAGNTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKF
PMVNQGSKDVGLIRYYSWYVDYVFTF"
misc_feature complement(451122..451517)
/locus_tag="hp2018_0455"
/note="Helicobacter outer membrane protein; Region:
HP_OMP; pfam01856"
/db_xref="CDD:216743"
gene complement(451791..451922)
/locus_tag="hp2018_0456"
/db_xref="GeneID:12371656"
CDS complement(451791..451922)
/locus_tag="hp2018_0456"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791278.1"
/db_xref="GI:385231359"
/db_xref="GeneID:12371656"
/translation="MKAFFIELPFIQMIEVIHYTYLYLKNLYFKSLRRFVLWVYPTY"
gene 451906..452646
/gene="modA"
/locus_tag="hp2018_0457"
/db_xref="GeneID:12371657"
CDS 451906..452646
/gene="modA"
/locus_tag="hp2018_0457"
/codon_start=1
/transl_table=11
/product="Molybdenum ABC transporter/periplasmic
molybdenum-binding protein"
/protein_id="YP_005791279.1"
/db_xref="GI:385231360"
/db_xref="GeneID:12371657"
/translation="MKNAFKAFALLIVFFSNALLAQDLKIAGAANLTHTLKALVKEFQ
KEHPKDAVKISFNSSGKLYAQIAQNAPFDLFISADITRPKKLYDEKITPFKEEVYAKG
VLVLWSENLKMDSLEILKDPKIKYIAMANPKLAPYGKASMEVLDNLKLTSSLKSKIIY
GASISQAHQFVATKNAQIGFGALSLIDKKDKNLSYFIIDKALYNPIEQALIITKNGAN
NPLAKVFKDFLFSPKARAIFKEYGYIVD"
misc_feature 451924..452640
/gene="modA"
/locus_tag="hp2018_0457"
/note="ABC-type molybdate transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: ModA; COG0725"
/db_xref="CDD:31069"
misc_feature 451990..452631
/gene="modA"
/locus_tag="hp2018_0457"
/note="molybdenum ABC transporter, periplasmic
molybdate-binding protein; Region: modA; TIGR01256"
/db_xref="CDD:162273"
gene 452669..453343
/gene="modB"
/locus_tag="hp2018_0458"
/db_xref="GeneID:12371658"
CDS 452669..453343
/gene="modB"
/locus_tag="hp2018_0458"
/codon_start=1
/transl_table=11
/product="Molybdenum transport system permease protein"
/protein_id="YP_005791280.1"
/db_xref="GI:385231361"
/db_xref="GeneID:12371658"
/translation="MDHEFLITMRLSFSLALITTLILLPIGIFLGYFLSLKRNLLTSL
TETLVYMPLVLPPSVLGFYLLLIFSPSSFLGAFLQDVFNVKLVFSFQGLILGSVIFSL
PFMVSPIKSALISLPTSLKEASYSLGKGEYYTLFFVLLPNIKPSVLMAIITTFTHTIG
EFGVVMMLGGDILGETRVASIAIFNEAEALNYPKAHQYALTLTLISFSLLFVTLFLNK
KQSSFL"
misc_feature <452762..453253
/gene="modB"
/locus_tag="hp2018_0458"
/note="ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones]; Region: CysU; COG0555"
/db_xref="CDD:30901"
misc_feature 452762..453244
/gene="modB"
/locus_tag="hp2018_0458"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(452771..452773,452801..452812,452816..452845,
452852..452857,452861..452863,452963..452968,
452972..452974,452978..452980,452987..452992,
452996..452998,453008..453013,453020..453022,
453071..453073,453113..453118,453125..453127,
453146..453157,453164..453169,453206..453211,
453239..453244)
/gene="modB"
/locus_tag="hp2018_0458"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(452819..452863,453146..453163)
/gene="modB"
/locus_tag="hp2018_0458"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(452861..452863,452945..452947,453164..453166,
453200..453202,453209..453211,453239..453241)
/gene="modB"
/locus_tag="hp2018_0458"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(453023..453061,453077..453082,453092..453094)
/gene="modB"
/locus_tag="hp2018_0458"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 453340..454137
/gene="modC"
/locus_tag="hp2018_0459"
/db_xref="GeneID:12371659"
CDS 453340..454137
/gene="modC"
/locus_tag="hp2018_0459"
/codon_start=1
/transl_table=11
/product="Molybdenum transport ATP-binding protein"
/protein_id="YP_005791281.1"
/db_xref="GI:385231362"
/db_xref="GeneID:12371659"
/translation="MIKARFKKRLLGSRGAFDLNIDLEIKEAEVVALLGESGAGKSTI
LRILAGLEAVSSGYIEANHSVWLDTQKKIFLKPQQRKIGFVFQDYALFPHLNVYQNIA
FAHPKDKNKIHEVLRLMRLESLSQQKIPKLSGGQAQRVALARALIAAKNLLLLDEPLN
ALDNALKNEVQQGLLDFIKRENLSVLLVSHDPNEITKLARTFLFLNNGVINPNQENRL
FSNRLLVKPLFEDENYCHYEVIPQTISLPKDCLNPTFKLDFNQGKKF"
misc_feature 453340..453963
/gene="modC"
/locus_tag="hp2018_0459"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 453373..453954
/gene="modC"
/locus_tag="hp2018_0459"
/note="putative bacteriocin export ABC transporter,
lactococcin 972 group; Region: L_ocin_972_ABC; TIGR03608"
/db_xref="CDD:188353"
misc_feature 453442..453465
/gene="modC"
/locus_tag="hp2018_0459"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(453451..453456,453460..453468,453598..453600,
453805..453810,453907..453909)
/gene="modC"
/locus_tag="hp2018_0459"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 453589..453600
/gene="modC"
/locus_tag="hp2018_0459"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 453733..453762
/gene="modC"
/locus_tag="hp2018_0459"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 453793..453810
/gene="modC"
/locus_tag="hp2018_0459"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 453817..453828
/gene="modC"
/locus_tag="hp2018_0459"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 453895..453915
/gene="modC"
/locus_tag="hp2018_0459"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(454309..455700)
/gene="gltX"
/locus_tag="hp2018_0460"
/db_xref="GeneID:12371660"
CDS complement(454309..455700)
/gene="gltX"
/locus_tag="hp2018_0460"
/EC_number="6.1.1.17"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_005791282.1"
/db_xref="GI:385231363"
/db_xref="GeneID:12371660"
/translation="MSLIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIED
TDLSRNSIEAANAIVEAFKWVGLEHDGEILYQSKRFEIYKEYIQKLLNEDKAYYCYMS
KDELDALREEQKARKETPRYDNRYRDFKGTPPKGIEPVVRIKVPQNEVIVFNDGVKGE
VRVNTNEIDDFIIARSDGTPTYNFVVTIDDALMGITDVIRGDDHLSNTPKQIILYKAL
NFKIPNFFHVPMILNEEGQKLSKRHGATNVMDYQEMGYLKEALVNFLVRLGWSYQDKE
VFSMQELLEWFDPKDLNSSPSCFSWHKLNWLNAHYLKNQSAQELLKLLKPFSFSDLSH
LNPAQLDRLLDALKERSQTLKELALKIDEVLTAPIEYEEKVFKKLNQALVMPLLEKFK
LALDKTDFNDESALENAMHQIIEEEKIKAGSFMQPLRLALLGKGGGIGLKEVLFILGK
TESVKRIEAFLKS"
misc_feature complement(454318..455700)
/gene="gltX"
/locus_tag="hp2018_0460"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:179296"
misc_feature complement(<455398..455691)
/gene="gltX"
/locus_tag="hp2018_0460"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(order(455401..455403,455572..455574,
455632..455637,455641..455646,455668..455676,
455680..455682))
/gene="gltX"
/locus_tag="hp2018_0460"
/note="active site"
/db_xref="CDD:173905"
misc_feature complement(455641..455652)
/gene="gltX"
/locus_tag="hp2018_0460"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature complement(454759..>455187)
/gene="gltX"
/locus_tag="hp2018_0460"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(order(454984..454989,455011..455016,
455089..455094,455098..455103,455143..455145,
455155..455157))
/gene="gltX"
/locus_tag="hp2018_0460"
/note="active site"
/db_xref="CDD:173905"
misc_feature complement(454975..454989)
/gene="gltX"
/locus_tag="hp2018_0460"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
misc_feature 455855..457493
/note="potential frameshift: common BLAST hit:
gi|15611497|ref|NP_223148.1| type II DNA modification
(methyltransferase"
gene 455855..457183
/locus_tag="hp2018_04611"
/db_xref="GeneID:12371661"
CDS 455855..457183
/locus_tag="hp2018_04611"
/codon_start=1
/transl_table=11
/product="adenine specific DNA methyltransferase"
/protein_id="YP_005791283.1"
/db_xref="GI:385231364"
/db_xref="GeneID:12371661"
/translation="MPSNALLIEEIARLINVSHSSVRNWIKTNLLEKLEIDHKIYVKT
SSFLDFCRNHLGKNKLNKYANKSLKGAHNHQELILKYLEMLENSSDLEKLGSYYEEEL
SNTTRNLEGIYYTPNRIVEQLFTLPKDFDTTQATFCDPAVGSGNFVMHALKLGFKVEN
IYGYDTDAFAVTLTKKRIKERYRLDCPNIMQKDFLSLKHAPQFDCIFTNPPWGKKYNQ
NQKENFKQRFNLSQSLDSASLFFMASLNCLKENAHLGLLLPESCLNIDAFSKMREVAL
KFQMRSLIDFNKPFKNLMTKAVGLALKKTPNKDQKISCFYQNSKFKRSPSSFFNNPKK
IFNIHCSHQKNKILDHLFSIPHMTLKNNAHFALGIVTGNNKEKLHSKQEKNTIPIFRG
SDILKDGLKAPSQFINADLKDCQQVAPLSLYQAREKNRVQIHFFKTGLFL"
misc_feature 455936..457165
/locus_tag="hp2018_04611"
/note="Adenine-specific DNA methylase [DNA replication,
recombination, and repair]; Region: COG0827"
/db_xref="CDD:31169"
misc_feature 456257..456634
/locus_tag="hp2018_04611"
/note="Methyltransferase domain; Region: Methyltransf_26;
pfam13659"
/db_xref="CDD:205836"
gene 457143..457493
/locus_tag="hp2018_04612"
/db_xref="GeneID:12371662"
CDS 457143..457493
/locus_tag="hp2018_04612"
/codon_start=1
/transl_table=11
/product="adenine specific DNA methyltransferase"
/protein_id="YP_005791284.1"
/db_xref="GI:385231365"
/db_xref="GeneID:12371662"
/translation="MYKFISLKLVFFYDNKQRLFLNSANMFVLKENFPINAHALKELL
NSDLMQFIFESLFKTHKILRKDLECLPLFTQFINNGFDEKFYLKNLGIEKKDPKHFTI
RKNHAHRLSFGFRG"
misc_feature <457143..457358
/locus_tag="hp2018_04612"
/note="TaqI-like C-terminal specificity domain; Region:
TaqI_C; pfam12950"
/db_xref="CDD:193423"
gene 457459..458307
/locus_tag="hp2018_04613"
/db_xref="GeneID:12371663"
CDS 457459..458307
/locus_tag="hp2018_04613"
/codon_start=1
/transl_table=11
/product="adenine specific DNA methyltransferase"
/protein_id="YP_005791285.1"
/db_xref="GI:385231366"
/db_xref="GeneID:12371663"
/translation="MRIACLLALGDNLITLSLLKEIALKQQQPLKILGTHLTLKIAKL
LECEKHFEIIPLFENIPAFYDLKKQGVFGAMKDFLWLLKALKKHKVKHLILEKQDFRS
ALLAQFIPITTPNKEIKNVYQNRQELFSQIYGHAFDNPLYPMSVKNPKKILINPFTRE
NDRNISLEHLKIVLKLLKPFCVTLLDFEERYVFLKDEVTHYRAKTSLEEVKNLILESD
LYIGGDSFLIHLAYYLKKNYFIFFYRDNDDFMPPNGGNENFLKAHKSHFIEQDLAKKF
RHLGLL"
misc_feature 457465..458301
/locus_tag="hp2018_04613"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature <458068..458166
/locus_tag="hp2018_04613"
/note="ADP-heptose:LPS heptosyltransferase II;
Provisional; Region: PRK10916; cl15782"
/db_xref="CDD:210182"
gene 458353..460152
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/db_xref="GeneID:12371664"
CDS 458353..460152
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_005791286.1"
/db_xref="GI:385231367"
/db_xref="GeneID:12371664"
/translation="MKNIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDS
NDLERERGITILSKNTAIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQE
GVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLFVAMGASDKQLDFP
VVYAAARDGYAMKSLDDEKKNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVG
KIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGFLGLARTEIENAYAGDIVALA
GFNAMDVGDSVVDPTNPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRL
LKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRRERFEFSISRPEVIIKEENG
VKCEPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYR
SEFLTDTKGEGVMNHSFLEFRPFSGSVESRKNGALISMENGEATAFSLFNIQERGALF
INPQTKVYVGMVIGEHSRDNDLDVNPIKSKHLTNMRASGSDDAIKLTPPRTMVLERAL
EWIEEDEILEVTPLNLRIRKKILDPNMRKRAKK"
misc_feature 458359..458940
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="Tyrosine phosphorylated protein A (TypA)/BipA
family belongs to ribosome-binding GTPases; Region:
TypA_BipA; cd01891"
/db_xref="CDD:206678"
misc_feature 458362..460140
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="GTP-binding protein TypA/BipA; Region: TypA_BipA;
TIGR01394"
/db_xref="CDD:162336"
misc_feature 458383..458406
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="G1 box; other site"
/db_xref="CDD:206678"
misc_feature order(458386..458388,458392..458394,458404..458409,
458416..458418,458425..458430,458524..458529,
458581..458586,458653..458658,458764..458766,
458776..458778)
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206678"
misc_feature order(458392..458409,458731..458736,458740..458742,
458845..458853)
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206678"
misc_feature 458491..458526
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="Switch I region; other site"
/db_xref="CDD:206678"
misc_feature 458512..458514
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="G2 box; other site"
/db_xref="CDD:206678"
misc_feature 458569..458580
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="G3 box; other site"
/db_xref="CDD:206678"
misc_feature 458575..458631
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="Switch II region; other site"
/db_xref="CDD:206678"
misc_feature 458731..458742
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="G4 box; other site"
/db_xref="CDD:206678"
misc_feature 458845..458853
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="G5 box; other site"
/db_xref="CDD:206678"
misc_feature 458962..459219
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="BipA_TypA_II: domain II of BipA (also called TypA)
having homology to domain II of the elongation factors
(EFs) EF-G and EF-Tu. BipA is a highly conserved protein
with global regulatory properties in Escherichia coli.
BipA is phosphorylated on a...; Region: BipA_TypA_II;
cd03691"
/db_xref="CDD:58082"
misc_feature 459538..459774
/gene="typA"
/locus_tag="hp2018_0462"
/gene_synonym="bipA"
/note="BipA_TypA_C: a C-terminal portion of BipA or TypA
having homology to the C terminal domains of the
elongation factors EF-G and EF-2. A member of the ribosome
binding GTPase superfamily, BipA is widely distributed in
bacteria and plants. BipA is a highly...; Region:
BipA_TypA_C; cd03710"
/db_xref="CDD:58063"
gene 460168..461097
/locus_tag="hp2018_0463"
/db_xref="GeneID:12371665"
CDS 460168..461097
/locus_tag="hp2018_0463"
/codon_start=1
/transl_table=11
/product="DNA adenine methylase"
/protein_id="YP_005791287.1"
/db_xref="GI:385231368"
/db_xref="GeneID:12371665"
/translation="MHANLFNQNASKKDVFLHNLRSNNGRYKRYVKAPLRYGGGKSLA
VGLIVECIPNGVRRVISPFIGGGSVEIACTTELGLEVLGFDIFDILVNFYQALLKDKQ
ALYDNLLSLEPNQETYSIIKQELKAHYKKECVLDPLILARDYYFNFNLSYGPGFLGWM
SKIYTDKERYLNALLKIKDFNAPSLKVECSSFEEVLLAYPNDFFYLDPPYVLENSKMF
KGIYPMRNFPIHHNGFKHEVLAHMLKRHKGPFILSYNDCELVRNAYKDFKILEPSWQY
TMGQGEIRMGKNRLERGDNNHVKQSHELLIIKE"
misc_feature 460255..461085
/locus_tag="hp2018_0463"
/note="Site-specific DNA methylase [DNA replication,
recombination, and repair]; Region: Dam; COG0338"
/db_xref="CDD:30686"
misc_feature 461100..461722
/note="potential frameshift: common BLAST hit:
gi|308184263|ref|YP_003928396.1| type II restriction
endonuclease"
gene 461100..461429
/locus_tag="hp2018_04641"
/db_xref="GeneID:12371666"
CDS 461100..461429
/locus_tag="hp2018_04641"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791288.1"
/db_xref="GI:385231369"
/db_xref="GeneID:12371666"
/translation="MHISGVKTAFKIAGVEYAKDSTKLNFNYLKDLKDENNQSLSQNI
LTQNVARVYLIVVDGEIKKIGGSQADGGIKSTLNIYKDGESKGGLVLEVLACGIFFIT
QYLQGLK"
misc_feature 461247..>461360
/locus_tag="hp2018_04641"
/note="GIY-YIG nuclease domain superfamily; Region:
GIY-YIG_SF; cl15257"
/db_xref="CDD:210056"
misc_feature order(461250..461258,461286..461294)
/locus_tag="hp2018_04641"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198380"
misc_feature order(461256..461258,461286..461288,461292..461294,
461325..461327,461337..461339)
/locus_tag="hp2018_04641"
/note="active site"
/db_xref="CDD:198380"
misc_feature 461325..461327
/locus_tag="hp2018_04641"
/note="catalytic site [active]"
/db_xref="CDD:198380"
gene 461438..461722
/locus_tag="hp2018_04642"
/db_xref="GeneID:12371667"
CDS 461438..461722
/locus_tag="hp2018_04642"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005791289.1"
/db_xref="GI:385231370"
/db_xref="GeneID:12371667"
/translation="MIYQPNFETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNSHD
ALPEWNAREQGKDWPNDIKDEHANTTQKAQNREKAVHRKAIDKPGRTLKD"
misc_feature <461438..461593
/locus_tag="hp2018_04642"
/note="GIY-YIG nuclease domain superfamily; Region:
GIY-YIG_SF; cl15257"
/db_xref="CDD:210056"
misc_feature 461528..461530
/locus_tag="hp2018_04642"
/note="catalytic site [active]"
/db_xref="CDD:198380"
misc_feature 461528..461530
/locus_tag="hp2018_04642"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198380"
gene 461812..462294
/locus_tag="hp2018_04651"
/db_xref="GeneID:12371668"
CDS 461812..462294
/locus_tag="hp2018_04651"
/EC_number="2.1.1.37"
/codon_start=1
/transl_table=11
/product="DNA-cytosine methyltransferase"
/protein_id="YP_005791290.1"
/db_xref="GI:385231371"
/db_xref="GeneID:12371668"
/translation="MYKVADIFCGAGGLSYGFSVHPYFELIWANDIDKDAILSYQANH
KETQTILCDIAQLHCHNLPCVPIDILLGGPPCQSYSTLGKRKMDEKANLFKEYLRILD
LVKPKIFVFENVVGLISMQKGQLFQRICNAFKERGYILEHAILNALDYGVPQVRERVI
"
misc_feature 461812..>462291
/locus_tag="hp2018_04651"
/note="Site-specific DNA methylase [DNA replication,
recombination, and repair]; Region: Dcm; COG0270"
/db_xref="CDD:30619"
misc_feature 461815..>462291
/locus_tag="hp2018_04651"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTas 