LOCUS NC_017436 1042520 bp DNA circular BCT 27-SEP-2012
DEFINITION Chlamydia trachomatis D-LC chromosome, complete genome.
ACCESSION NC_017436
VERSION NC_017436.1 GI:385244087
DBLINK Project: 159879
BioProject: PRJNA159879
KEYWORDS .
SOURCE Chlamydia trachomatis D-LC
ORGANISM Chlamydia trachomatis D-LC
Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
Chlamydia/Chlamydophila group; Chlamydia.
REFERENCE 1 (bases 1 to 1042520)
AUTHORS Sturdevant,G.L., Kari,L., Gardner,D.J., Olivares-Zavaleta,N.,
Randall,L.B., Whitmire,W.M., Carlson,J.H., Goheen,M.M.,
Selleck,E.M., Martens,C. and Caldwell,H.D.
TITLE Frameshift Mutations in a Single Novel Virulence Factor Alter the
In Vivo Pathogenicity of Chlamydia trachomatis for the Female
Murine Genital Tract
JOURNAL Infect. Immun. 78 (9), 3660-3668 (2010)
PUBMED 20547745
REFERENCE 2 (bases 1 to 1042520)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (06-APR-2012) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1042520)
AUTHORS Sturdevant,G.L., Kari,L., Gardner,D.J., Olivares-Zavaleta,N.,
Randall,L.B., Whitmire,W.M., Carlson,J.H., Goheen,M.M.,
Selleck,E.M., Martens,C. and Caldwell,H.D.
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2010) Research Technologies Branch of the Rocky
Mountain Laboratories, National Institute of Allergy and Infectious
Diseases, National Institutes of Health, 903 South 4th Street,
Hamilton, MT 59840, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP002054.
Sequencing Center: Integrated Genomics, Inc., 2355 S. Arlington
Heights Road, Suite 270, Arlington Heights, IL 60005, USA
Source DNA and bacteria available from Harlan D. Caldwell at
hcaldwell@niaid.nih.gov<mailto:hcaldwell@niaid.nih.gov>.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1042520
/organism="Chlamydia trachomatis D-LC"
/mol_type="genomic DNA"
/strain="D-LC"
/db_xref="taxon:759364"
gene join(1041921..1042520,1..1176)
/locus_tag="CTDLC_0875"
/db_xref="GeneID:12388259"
CDS join(1041921..1042520,1..1176)
/locus_tag="CTDLC_0875"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811932.1"
/db_xref="GI:385244088"
/db_xref="GeneID:12388259"
/translation="MSIRGVGGNGNSRIPSHNGDGSNRRSQNTKGNNKVEDRVCSLYS
SRSNENRESPYAVVDVSSMIESTPTSGETTRASRGVFSRFQRGLVRVADKVRRAVQCA
WSSVSTRRSSATRAAESGSSSRTARGASSGYREYSPSAARGLRLMFTDFWRTRVLRQT
SPMAGVFGNLDVNEARLMAAYTSECADHLEANKLAGPDGVAAAREIAKRWEQRVRDLQ
DKGAARKLLNDPLGRRTPNYQSKNPGEYTVGNSMFYDGPQVANLQNVDTGFWLDMSNL
SDVVLSREIQTGLRARATLEESMPMLENLEERFRRLQETCDAARTEIEESGWTRESAS
RMEGDEAQGPSRAQQAFQSFVNECNSIEFSFGSFGEHVRVLCARVSRGLAAAGEAIRR
CFSCCKGSTHRYAPRDDLSPEGASLAETLARFADDMGIERGADGTYDIPLVDDWRRGV
PSIEGEGSDSIYEIMMPIYEVMDMDLETRRSFAVQQGHYQDPRASDYDLPRASDYDLP
RSPYPTPPLPPRYQLQNMDVEAGFREAVYASFVAGMYNYVVTQPQERIPNSQQVEGIL
RDMLTNGSQTFRDLMRRWNREVDRE"
gene complement(1321..1593)
/locus_tag="CTDLC_0001"
/db_xref="GeneID:12388270"
CDS complement(1321..1593)
/locus_tag="CTDLC_0001"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005811933.1"
/db_xref="GI:385244089"
/db_xref="GeneID:12388270"
/translation="MLCKVCRGLSSLIVVLGAINTGILGVTGYKVNLLTHLLGEGTMW
TQAAYVVTGIAGVMVCLNFLKCCFKKRHGDCCSSKGGYHHHHMDRE"
misc_feature complement(1360..1593)
/locus_tag="CTDLC_0001"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2155"
/db_xref="CDD:225066"
gene 1794..2096
/gene="gatC"
/locus_tag="CTDLC_0002"
/db_xref="GeneID:12388272"
CDS 1794..2096
/gene="gatC"
/locus_tag="CTDLC_0002"
/EC_number="6.3.5.-"
/codon_start=1
/transl_table=11
/product="Glutamyl-tRNA(Gln) amidotransferase subunit C"
/protein_id="YP_005811934.1"
/db_xref="GI:385244090"
/db_xref="GeneID:12388272"
/translation="MTESYVNKEEIISLAKNAALELEDAHVEEFVTSMNDVIALMQEV
IAIDISDIILEATVHHFVGPEDLREDMVTSDFTQEEFLSNVPVSLGGLVKVPTVIK"
misc_feature 1803..2093
/gene="gatC"
/locus_tag="CTDLC_0002"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
[Translation, ribosomal structure and biogenesis]; Region:
GatC; COG0721"
/db_xref="CDD:223793"
gene 2108..3583
/gene="gatA"
/locus_tag="CTDLC_0003"
/db_xref="GeneID:12388274"
CDS 2108..3583
/gene="gatA"
/locus_tag="CTDLC_0003"
/EC_number="6.3.5.-"
/codon_start=1
/transl_table=11
/product="Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase
subunit A"
/protein_id="YP_005811935.1"
/db_xref="GI:385244091"
/db_xref="GeneID:12388274"
/translation="MYRKSALELRDAVVNRELSVTAITEYFYHRIESHDEQIGAFLSL
CKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPFD
STVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAV
SARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVV
EDVALAMDAFAGRDPKDSTTRDFFKGTFSQALSLEVPKLIGVPRGFLDGLQEDCKENF
FEALAVMEREGSRIIDVDLSVLKHAVPVYYIVASAEAATNLARFDGVRYGHRCAQADN
MHEMYARSRKEGFGKEVTRRILLGNYVLSAERQNIFYKKGMAVRARLIDAFQAAFERC
DVIAMPVCATPAIRDQDVLDPVSLYLQDVYTVAVNLAYLPAISVPSGLSKEGLPLGVQ
FIGERGSDQQICQVGYSFQEHSQIKQLYPKAVNGLFDGGIE"
misc_feature 2108..3544
/gene="gatA"
/locus_tag="CTDLC_0003"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:223232"
misc_feature 2144..3514
/gene="gatA"
/locus_tag="CTDLC_0003"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed; Region: gatA; PRK00012"
/db_xref="CDD:234572"
gene 3585..5051
/gene="gatB"
/locus_tag="CTDLC_0004"
/db_xref="GeneID:12388282"
CDS 3585..5051
/gene="gatB"
/locus_tag="CTDLC_0004"
/EC_number="6.3.5.-"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
B"
/protein_id="YP_005811936.1"
/db_xref="GI:385244092"
/db_xref="GeneID:12388282"
/translation="MGIAHTEWESVIGLEVHVELNTESKLFSPARNHFGDEPNTNISP
VCTGMPGSLPVLNKDAVRKAVLFGCAVEGDVALFSRFDRKSYFYPDSPRNFQITQYEH
PIVRGGCIRAVVEGEEKTFELAQTHLEDDAGMLKHFGDFAGVDYNRAGVPLIEIVSKP
CMFSAEDAVAYANALVSILGYIGISDCNMEEGSIRFDVNISVRPRGSRELRNKVEIKN
MNSFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEKKKTVLMRLKERAE
DYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMILVGDRHT
AHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQLVNFIDRGVI
TGKIAKEIADRMVSSFGESPEDILRRHPSLLPMTDDHALRAIVKEVVAQNTASVADYK
NGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDM"
misc_feature 3591..5048
/gene="gatB"
/locus_tag="CTDLC_0004"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit
(PET112 homolog) [Translation, ribosomal structure and
biogenesis]; Region: GatB; COG0064"
/db_xref="CDD:223142"
misc_feature 3609..4481
/gene="gatB"
/locus_tag="CTDLC_0004"
/note="GatB/GatE catalytic domain; Region: GatB_N;
pfam02934"
/db_xref="CDD:217294"
misc_feature 4593..5030
/gene="gatB"
/locus_tag="CTDLC_0004"
/note="GatB domain; Region: GatB_Yqey; pfam02637"
/db_xref="CDD:217159"
gene complement(5150..6241)
/locus_tag="CTDLC_0005"
/db_xref="GeneID:12388325"
CDS complement(5150..6241)
/locus_tag="CTDLC_0005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811937.1"
/db_xref="GI:385244093"
/db_xref="GeneID:12388325"
/translation="MTPVTPVPPQSPQQVKGLLSRFLTAPDRHPKLRYVYDIALIAIS
ILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVSDLAESQKSKEIADTVAAVSLP
FILTGTAAGLMFSAIAVGGGAVILANPLFLMGSMTLGFALMSLHRVTYQYLSNREQWK
QQKKLEQVELAAWESHLPKESKSSALEEVRYSPRLMKRGKTWRKRAIRRKNYTPIPLV
DKTLQTMQPDALFSSTTTHSTDSEQILTSVSPQSSDTESSSSSSFHTPPNSDKELSDS
NSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTTRRVVKLSRSERNAQHHRNK
DQEQRQDSSESSEEDSSSDSSQKKKPSRK"
gene complement(6369..6938)
/locus_tag="CTDLC_0006"
/db_xref="GeneID:12388359"
CDS complement(6369..6938)
/locus_tag="CTDLC_0006"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811938.1"
/db_xref="GI:385244094"
/db_xref="GeneID:12388359"
/translation="MPSTVAPIKGQDHFLNLVFPERVAAAYMSPLAQKYPKAALSIAS
LAGFLLGILKLITFPVLCAAGLFVFPIRGLISCLFHKSFQGCSGYVLATFLSLFSLAL
TIVGIVSCITWAPGFIFPMISVSIAFATVETCFQIYTHLFPALEHKPSSSLKIEIAAA
KLPRSSSAPDLNYPSLPTQSASPSQRFSA"
gene 7251..8201
/locus_tag="CTDLC_0007"
/db_xref="GeneID:12388367"
CDS 7251..8201
/locus_tag="CTDLC_0007"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811939.1"
/db_xref="GI:385244095"
/db_xref="GeneID:12388367"
/translation="MLKVLFHTMTLFGHLLSTPIYIVGDACGKDRDEYKNPPLRAFSF
ESQFLQIENAKFKTLPDQSLRYRQADTSLFATIPVTEMSGFLLSSRYLGAEVSWKSSK
ELQDTDLQAVGYFAFQDKSFYQYITLSVGAYTLALTNWQWSVLFSGMVDPENIEIGSG
LYQVVLSSKYHASESLSVIMGVINEVGLHDKQAWPLLGFSYKPEDRLTLNCIYPVNFS
AEYQCTPVCDLGVAYRLTRLRKKFPKNSLATSEGIFEYSGREIEGNIKLIFWPGQSLK
MFGGYSVGNDISLANAHNEDEKIYKFGSSLFFGASANLHF"
gene complement(8217..9125)
/gene="rnhB_1"
/locus_tag="CTDLC_0008"
/db_xref="GeneID:12388257"
CDS complement(8217..9125)
/gene="rnhB_1"
/locus_tag="CTDLC_0008"
/EC_number="3.1.26.4"
/codon_start=1
/transl_table=11
/product="Ribonuclease HIII"
/protein_id="YP_005811940.1"
/db_xref="GI:385244096"
/db_xref="GeneID:12388257"
/translation="MIMPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPT
VSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQTFSSQNVQQDLRSRIGVDESGKGDFF
GPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKY
NALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASSERVLLQAVRKKCSDI
ELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGASGKVKQRAKEILHN
KGQVVLEKVCKTHFKTFNEVLGSGNQ"
misc_feature complement(8865..9113)
/gene="rnhB_1"
/locus_tag="CTDLC_0008"
/note="Domain of unknown function (DUF3378); Region:
DUF3378; pfam11858"
/db_xref="CDD:152294"
misc_feature complement(8250..9104)
/gene="rnhB_1"
/locus_tag="CTDLC_0008"
/note="ribonuclease HIII; Region: rnhC; TIGR00716"
/db_xref="CDD:129799"
misc_feature complement(8235..8855)
/gene="rnhB_1"
/locus_tag="CTDLC_0008"
/note="bacterial Ribonuclease HIII-like; Region:
RNase_HII_bacteria_HIII_like; cd06590"
/db_xref="CDD:187692"
misc_feature complement(order(8406..8408,8460..8462,8532..8534,
8601..8603,8610..8618,8835..8846))
/gene="rnhB_1"
/locus_tag="CTDLC_0008"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187692"
misc_feature complement(order(8445..8447,8532..8534,8841..8846))
/gene="rnhB_1"
/locus_tag="CTDLC_0008"
/note="active site"
/db_xref="CDD:187692"
gene 9346..9804
/gene="yfgA"
/locus_tag="CTDLC_0009"
/db_xref="GeneID:12388397"
CDS 9346..9804
/gene="yfgA"
/locus_tag="CTDLC_0009"
/codon_start=1
/transl_table=11
/product="Sigma-54 interaction/ATP-binding protein"
/protein_id="YP_005811941.1"
/db_xref="GI:385244097"
/db_xref="GeneID:12388397"
/translation="MGRANQGNYMSEHVHKELLHLGEVFRSQREERALSLKDVEAATS
IRLSALEAIEAGHLGKLISPVYAQGFMKKYAAFLDMDGDRLLKEHPYVLKIFQEFSDQ
NMDMLLDLESMGGRNSPEKAIRSWLNLGWAGVFVVGAACIWWLGNLFNLF"
misc_feature 9397..>9801
/gene="yfgA"
/locus_tag="CTDLC_0009"
/note="Predicted transcriptional regulator contains
Xre-like HTH domain [Function unknown]; Region: COG1426"
/db_xref="CDD:31615"
misc_feature 9415..9600
/gene="yfgA"
/locus_tag="CTDLC_0009"
/note="Helix-turn-helix domain; Region: HTH_25; pfam13413"
/db_xref="CDD:205591"
gene complement(9791..11158)
/gene="htrB"
/locus_tag="CTDLC_0010"
/db_xref="GeneID:12388398"
CDS complement(9791..11158)
/gene="htrB"
/locus_tag="CTDLC_0010"
/EC_number="2.3.1.-"
/codon_start=1
/transl_table=11
/product="Lipid A biosynthesis lauroyl acyltransferase"
/protein_id="YP_005811942.1"
/db_xref="GI:385244098"
/db_xref="GeneID:12388398"
/translation="MLFKRLRTGGKILVDHLVYGLGLGVLTILRLLPRSSLRLFSKGL
GTALFYFISDVRKTALTNLALAFPEKSFAERYQIARQSVQQMIITFVELATVDKFAKH
IDEMIAIATSEDAPEGFFPEEVSSQQELDHFFSRLDRQEGAILFCGHQANWELPFLYI
TKRYPGLAFAKPVKNRRLNQKIISLRESFQGKIVPPQNAINQALRALHRGEVVGIVGD
QVLLSSEYSYPLFGSQAFTTTSPALLAYKTKKTVIAVAIYRKPNGNYLVVPSKAFHAN
TELSIRESTEQLMDRLMRFLEKGITCKPEQWLWLHKRWKRKLRHKFKRRYAFSHILII
VKGTSLQALQRFLIEFGEFYADASLSLAIIGAADTVLANSFAPYSLQFFSSEEELLAA
PNFFPAIVDLFGLSRKTRLHYKRTGSRKIFTRNELKDSLLQKQSLIQSFHKLLRRVDT
RSRKG"
misc_feature complement(9794..11155)
/gene="htrB"
/locus_tag="CTDLC_0010"
/note="lipid A biosynthesis lauroyl acyltransferase;
Provisional; Region: PRK05906"
/db_xref="CDD:168292"
misc_feature complement(10241..10771)
/gene="htrB"
/locus_tag="CTDLC_0010"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature complement(order(10496..10504,10640..10651,10697..10699,
10703..10705,10712..10714))
/gene="htrB"
/locus_tag="CTDLC_0010"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene complement(11290..12546)
/locus_tag="CTDLC_0011"
/db_xref="GeneID:12388399"
CDS complement(11290..12546)
/locus_tag="CTDLC_0011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811943.1"
/db_xref="GI:385244099"
/db_xref="GeneID:12388399"
/translation="MINFVSWISRNWLQKLVSLGFAIIIWALANQSITVTRTFHNIPV
RVIDLAPEQTVIGLQANGLLKKKVAMMITGNKSVVEKLRPSNLEIVISAKGRTESWIE
TIDPYNLVCLDTDIHLRKNIKSVTSEDIFIRLTQFVTEDVSVTITKPIGRAPKGYEYL
DTWPKYLVQKVSGPKEYVSSLKDHGLELTFNLNKVSFEELDRNRLAQGNLDEVVYLVP
EDWKKVYIPFDNSYMELNDPQADFLRLLFLKQEFIPLNINLPVLLFFPVENSQLVNPQ
NCYLEENAPLVLNHGIYQMDLPLYVKDVSHLFLDVVKNNIALTIIMEPPVKSQREHFI
HWAVEFLDEKTLENTFVQAVMAQEQKTNKHMILDEAGIRHRFREYLRKLTLFDQNGEP
LALTARTSGNKVIIQVTSSSLKKKSS"
gene complement(12543..13337)
/gene="ybbP"
/locus_tag="CTDLC_0012"
/db_xref="GeneID:12388400"
CDS complement(12543..13337)
/gene="ybbP"
/locus_tag="CTDLC_0012"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005811944.1"
/db_xref="GI:385244100"
/db_xref="GeneID:12388400"
/translation="MFVGITYYTTPLLEIALIWVVLNYLLKFFWGTGAMDLVFGLLSF
LCLFVLAEKLHLPVIRNLMLHVVNIAAIVVFIIFQPEIRLALSRIRLRRGKFVINMQD
EFIDHLTACIYRMAERQIGALIVLENERLLNDLLNLSAVKINADFSEELLEAIFEPSS
HLHDGAVLMRGETISYARVILPLAHDTTQLSRSMGTRHRAALGASQRTDALVIVVSEK
TGAVSLARDGILTRGVKMDRFKAILRSILTRNERKTNPIISWMRKK"
misc_feature complement(12621..13337)
/gene="ybbP"
/locus_tag="CTDLC_0012"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1624"
/db_xref="CDD:31811"
misc_feature complement(12645..13016)
/gene="ybbP"
/locus_tag="CTDLC_0012"
/note="DisA bacterial checkpoint controller
nucleotide-binding; Region: DisA_N; pfam02457"
/db_xref="CDD:190315"
gene 13612..14952
/gene="cydA"
/locus_tag="CTDLC_0013"
/db_xref="GeneID:12388401"
CDS 13612..14952
/gene="cydA"
/locus_tag="CTDLC_0013"
/EC_number="1.10.3.-"
/codon_start=1
/transl_table=11
/product="Cytochrome d ubiquinol oxidase subunit I"
/protein_id="YP_005811945.1"
/db_xref="GI:385244101"
/db_xref="GeneID:12388401"
/translation="MSAEILARVQFALFIGFHYLFVPISLGLSMMIVLMEGLYLFTKK
SIYKQLTWFWIRIFTLTFVVGVVTGLMQIFSFGANWSRFAEYTGNVFGMFLGSEGMFA
FFLESGFLGVLLFGRYKVSKKMHFFSACMVALGAHMSAFWIVCANSWMQTPSGYEMVM
RNGMLVPQMTSFWAAVLSPSALQRFTHVVLGAWLSGIFLVLSVSAHYLRKERHKDFAN
QGLKISMFCAFLVLALQLWSADVTARGVAKHQPAKLAAFEGVFKTQGHTPIYLLGIVD
MKKERVIGIPIPSGLSLLVHRNAKTPVTGLDQFPKDEWPNVAFVFQTYHLMVMLWGVM
VLLALIAFAVYKKKSWSCKKGILWILSFSVLCPELCNEIGWISTEVGRQPWVVYGLLK
TKDATSPIVNAGQIWQSLILFSIIFICLLSVFVSLLLKKIGEGPDEQDLIEVDL"
misc_feature 13627..14832
/gene="cydA"
/locus_tag="CTDLC_0013"
/note="Bacterial Cytochrome Ubiquinol Oxidase; Region:
Bac_Ubq_Cox; pfam01654"
/db_xref="CDD:216630"
gene 14949..16025
/gene="cydB"
/locus_tag="CTDLC_0014"
/db_xref="GeneID:12388402"
CDS 14949..16025
/gene="cydB"
/locus_tag="CTDLC_0014"
/EC_number="1.10.3.-"
/codon_start=1
/transl_table=11
/product="Cytochrome d ubiquinol oxidase subunit II"
/protein_id="YP_005811946.1"
/db_xref="GI:385244102"
/db_xref="GeneID:12388402"
/translation="MRAFFMEFSLATILPVVWYVILCIAVFAYSLGDGFDLGLSTIYF
LSKDEKERRLLLNSIGPVWDGNEVWFVIMFAGLFAGFPTAYGTLLSIFYMPIWTMVML
YIFRGCSLEFRSKAESNRWKLFWDVLFSISGMSISFFLGTLAGNLLVGFPIAPDTSYS
SLSWKLFFRPYPVLCGLFVVTAFALHGISFALMKTTEGLHERLKNKFSYVLSSYLVLY
LSLLIATILGMPQTLGVCCRIEGAPGIPAYPLIILLSVVTLSCCYAEKRAVSIGKYGK
AFVLSCINLLSPILAYNILLFPNLLVSTVDNRYTMTVFNAAAETRTLQHLVTIVLIGL
PFVVAYAVYIYRVFRGKTDFPSIY"
misc_feature 14970..16022
/gene="cydB"
/locus_tag="CTDLC_0014"
/note="Cytochrome bd-type quinol oxidase, subunit 2
[Energy production and conversion]; Region: AppB; COG1294"
/db_xref="CDD:31485"
misc_feature 14988..16019
/gene="cydB"
/locus_tag="CTDLC_0014"
/note="cytochrome d ubiquinol oxidase subunit 2;
Provisional; Region: PRK15003; cl12219"
/db_xref="CDD:187194"
gene complement(16123..17427)
/gene="phoH"
/locus_tag="CTDLC_0015"
/db_xref="GeneID:12388403"
CDS complement(16123..17427)
/gene="phoH"
/locus_tag="CTDLC_0015"
/codon_start=1
/transl_table=11
/product="Phoh"
/protein_id="YP_005811947.1"
/db_xref="GI:385244103"
/db_xref="GeneID:12388403"
/translation="MKKTSVIDTSVLIYDPKALSSFSNTRIIIPFTVIEELESCAKFR
DESGKNASRALGNIRVLLEQSERPSSGQILLKNGSELCIEVSPLVNLSNHKKQKKHLT
LELLQIISQRESVVFVTKSLGRRVHAEALGIEAKDYENKCVSFQSLYRGHRKLKVANS
TIEYFYKDGSIAFPSDLSPLPSPNEYFFLSGDSDNYSAVGRYSSKDNKILSLKPAPEK
IWGVKPLNIEQRCALDLLLRDDIKLVTLMGQAGSGKTILALAAAMYQVFEKPKYNKLL
VSRPIIPMGKDIGFLPGIKEAKLMHWMQPIYDNMEFLFDVNNMGDFSETLHSLMETKK
LEMEALTYIRGRSLPKVFMIIDEAQNLTPHEIKTIISRAGKGTKIVLTGDPTQIDSLY
FDENSNGLTYLVGKFHHLPLYGHMFMTRTERSELAAAAATIL"
misc_feature complement(16126..17427)
/gene="phoH"
/locus_tag="CTDLC_0015"
/note="NYN ribonuclease and ATPase of PhoH family domains
[General function prediction only]; Region: COG1875"
/db_xref="CDD:224787"
misc_feature complement(17008..17421)
/gene="phoH"
/locus_tag="CTDLC_0015"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:246722"
misc_feature complement(order(17065..17067,17404..17406))
/gene="phoH"
/locus_tag="CTDLC_0015"
/note="putative active site [active]"
/db_xref="CDD:189022"
misc_feature complement(16144..16767)
/gene="phoH"
/locus_tag="CTDLC_0015"
/note="PhoH-like protein; Region: PhoH; pfam02562"
/db_xref="CDD:190347"
gene 17624..18364
/locus_tag="CTDLC_0016"
/db_xref="GeneID:12388404"
CDS 17624..18364
/locus_tag="CTDLC_0016"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811948.1"
/db_xref="GI:385244104"
/db_xref="GeneID:12388404"
/translation="MEVVMKVKINDQFICISPYISARWNQIAFIESCDGGTEGGITLK
LHLIDGETVSIPNLGQAIVDEVFQEHLLYLESTAPQKNKEEEKISSLLGAVQQMAKGC
EVQVFSQKGLVSMLLGGAGSINVLLQHSPEHKDHPDLPTDLLERIAQMMRSLSIGPTS
ILAKPEPHCNCLHCQIGRATVEEEDAGVSDEDLTFRSWDISQSGEKMYTVTDPLNPEE
QFNVYLGTPIGCTCGQPYCEHVKAVLYT"
gene 18418..19851
/locus_tag="CTDLC_0017"
/db_xref="GeneID:12388405"
CDS 18418..19851
/locus_tag="CTDLC_0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811949.1"
/db_xref="GI:385244105"
/db_xref="GeneID:12388405"
/translation="MTFSFKSIIIPSLEDESSRAANASLEAQILANCRSFCVRTLSIS
MLIFALSFGADACLCAADLSKAKVEASVGDRAAFSPFTGEIKGNRVRLRLAPHTDSFI
IKELSKGDCLAVLGESKDYYVVAAPEGVRGYVFRTFVLDNVIEGEKVNVRLEPSTSAP
ILARLSKGTVVKTLGAAQGKWIEIALPKQCVFYVAKNFVKNVGALDLYNQKEGQKKLA
LDLLSSAMDFADAELQKKIEDIDLDAIYKKMNLAQSEEFKDVPGLQSLVQKALERVQE
AFLAKSLEKSSVKVPEIRHKVLEEIAVVSPAVEETPVVTKTEEQKVTTVPVPAPAVVT
EPAQDLSSVKGSLLSHYIRKKGFVKASPVIEGRESFERSLFAVWLSLQPEEIRHQLTM
ESFYRDEQKKKRVLTGELEVYPHIVKNNPGDYLLKNGEDVVAFVYATSIDLSKWLGKS
VVLECVSRPNNHFAFPAYIVLSVKEGA"
misc_feature 18655..18840
/locus_tag="CTDLC_0017"
/note="Bacterial SH3 domain homologues; Region: SH3b;
smart00287"
/db_xref="CDD:197629"
misc_feature 18844..19017
/locus_tag="CTDLC_0017"
/note="Bacterial SH3 domain homologues; Region: SH3b;
smart00287"
/db_xref="CDD:197629"
gene complement(19913..20416)
/locus_tag="CTDLC_0018"
/db_xref="GeneID:12388406"
CDS complement(19913..20416)
/locus_tag="CTDLC_0018"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811950.1"
/db_xref="GI:385244106"
/db_xref="GeneID:12388406"
/translation="MYVFSSTFFFMQHAHNTDSLPAWDCLQHNYLRRNALTSFCSYVP
ILSTVVGIRTLYNMRKLHTAFVQRTGGFLCQNDPNIPCDKFPCSIIRKEWPQVHTKAM
QEVFGIKALVCLGSLILKIFRAVKAFFHRTFSPSLLPEQDTSIQLPDSPQSGIPEETL
LETPRSS"
gene 21417..24542
/gene="ileS"
/locus_tag="CTDLC_0019"
/db_xref="GeneID:12388407"
CDS 21417..24542
/gene="ileS"
/locus_tag="CTDLC_0019"
/EC_number="6.1.1.5"
/codon_start=1
/transl_table=11
/product="Isoleucyl-tRNA synthetase, mupirocin resistant"
/protein_id="YP_005811951.1"
/db_xref="GI:385244107"
/db_xref="GeneID:12388407"
/translation="MNNQRMDNEDKISISAKEEKILSFWKEQDIFQKTLDNREGCPTF
SFYDGPPFATGLPHYGHLLAGTIKDVVCRYASMDGHYVPRRFGWDCHGVPVEYEVEKS
LGLTEPGAIERFGVANFNEECRKIVFRYADEWKYFVDRIGRWVDFSATWRTMDLSFME
SVWWVFRSLYDQGLVYEGTKVVPFSTKLGTPLSNFEAGQNYKEVDDPSVVVKFALQDN
QGFLLAWTTTPWTLVSNMALAVHPELTYVRIKDKESGDEYILGQESLPRWFPDRESYE
WIGQLSGKSLVGQSYEPLFPYFQDKKELEAFRILPADFIEESEGTGIVHMAPAFGEAD
FFACQEHNVPLVCPVDNQGCYTAEVKDFVGEYIKSADKGIARRLKNENKLFYQGTVRH
RYPFCWRTDSPLIYKAVNSWFVAVEKVKSKMLKANESIHWTPEHIKQGRFGKWLEGAR
DWAISRNRYWGTPIPIWRSDDGELLVIGSIQELEALSGQKIVDLHRHFIDEIEINQNG
KSFRRIPYVFDCWFDSGAMPYAQNHYPFERAEETEACFPADFIAEGLDQTRGWFYTLT
VIAAALFDQPAFKNVIVNGIILAEDGNKMSKRLNNYPSPKMIMDAYGADALRLYLLNS
VVVKAEDLRFSDKGVESVLKQVLLPLSNALAFYKTYAELYGFDPKETDNIELAEIDRW
ILSSLYSLVGKTRESMSQYDLHAAVNPFVDFIEDLTNWYIRRSRRRFWDAEDSADRRA
AFSTLYEVLVVFSKVIAPFIPFIAEDMYQQLRGETDPESVHLCDFPHVVLEKILPDLE
RKMQDIREIVALGHSLRKEHKLKVRQPLQNVYIVGSKERKEALAQVGSLIGEELNVKD
VHFCSETPEYVTTLIKPNFRTLGKKVGNRLPEIQRALAGLPQEQIQAFMHKGQMVVSL
GEETISLDKEDITVSWASAEGFVARSSASFVAVLDCQLTEPLIMEGIARELVNKINTM
RRNRKLHVSDRIAIRLHAPVIVQEAFALHKEYICEETLTTSVSVIDYKEGEEWDINGH
AVSFVLERVER"
misc_feature 21441..24533
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS;
PRK06039"
/db_xref="CDD:180364"
misc_feature 21540..>21968
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature 21588..21599
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="HIGH motif; other site"
/db_xref="CDD:173909"
misc_feature <22557..23318
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature order(22737..22739,22977..22979,22986..22988,23073..23087,
23091..23093,23097..23099,23166..23180,23190..23207,
23307..23309)
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="active site"
/db_xref="CDD:173909"
misc_feature 23196..23210
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="KMSKS motif; other site"
/db_xref="CDD:173909"
misc_feature 23316..23852
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="Anticodon-binding domain of archaeal, bacterial,
and eukaryotic cytoplasmic isoleucyl tRNA synthetases;
Region: Anticodon_Ia_Ile_ABEc; cd07961"
/db_xref="CDD:153415"
misc_feature order(23325..23327,23337..23339,23346..23348,23361..23363,
23370..23372,23379..23384,23526..23528,23535..23540,
23547..23552,23559..23561,23571..23573,23583..23585,
23592..23594,23841..23843,23850..23852)
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153415"
misc_feature order(23370..23372,23379..23381)
/gene="ileS"
/locus_tag="CTDLC_0019"
/note="anticodon binding site; other site"
/db_xref="CDD:153415"
gene complement(24601..26487)
/gene="lepB"
/locus_tag="CTDLC_0020"
/db_xref="GeneID:12388408"
CDS complement(24601..26487)
/gene="lepB"
/locus_tag="CTDLC_0020"
/EC_number="3.4.21.89"
/codon_start=1
/transl_table=11
/product="Signal peptidase I"
/protein_id="YP_005811952.1"
/db_xref="GI:385244108"
/db_xref="GeneID:12388408"
/translation="MTSSYMSRLYSLNKSRRILHSSFRLLKSTKMLSHPETQKELQEV
LKQLEEAILDQNREDASLFAKQAQAIQKRFPKSKLRATFDLIYALTFAAILAFLIRQF
WFELYEVPTGSMRPTILEQDRILVSKTTFGLRLPFSNKSIGYTPEAITRGELVVFTVG
DLPIPSADTKYFGIIPGKKRYIKRCMGKPGDTVYFYGGKIYGIDCDGEPIFPQNTENL
YHVPYISFDGTPEILTHSEEQTDVIFNQFHTPCGKISLPQQASYGQFFYKNAWHNDTP
YALKDPHNEPVSYADLFGIKNFAMVRILTKKQAALTHVLPSPLSDTYLEIAHTPNVSY
PHPHLRPFETQLIPTIEPMKTLLPLRKEHIHLIRNNLTTSRFTVVDGYAYKYQPAPMN
TSGMARMFALPMPNIPDGCYEFSKGDVFKINMSGFRTKLKQPHPLTQLSNSQVIDLFN
CGISFHTIYIPKNPQYAPFPNRYAFFHQGNLFVMDSPVFIDSDPALQKFIVSEEEKEL
QSSEDKPYIAFIDRGPPPESTEEFVSFITNFGLKIPEGHVLVLGDNCPMSADSRDFGF
VPVENLLGSPVGIFWPINRLGLLSSNITPLSLPGYLVNGLALGAFLYCIGLWYYRKNH
RLFP"
misc_feature complement(<25927..26175)
/gene="lepB"
/locus_tag="CTDLC_0020"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature complement(order(25939..25941,26149..26151))
/gene="lepB"
/locus_tag="CTDLC_0020"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
misc_feature complement(24736..>25083)
/gene="lepB"
/locus_tag="CTDLC_0020"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:211726"
misc_feature complement(24766..>24846)
/gene="lepB"
/locus_tag="CTDLC_0020"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
gene complement(26673..27461)
/locus_tag="CTDLC_0021"
/db_xref="GeneID:12388409"
CDS complement(26673..27461)
/locus_tag="CTDLC_0021"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811953.1"
/db_xref="GI:385244109"
/db_xref="GeneID:12388409"
/translation="MKISHNRRESIPEHFMKKQEKMHPQNLLKVFIFFLAFFISYPSA
EAHSPLQSSIQEKILTARPGDYAVLSRGSQKFFFLIRQSSSEATWVEMSEFASLTQQE
KKLVEQSSWKNAFHQLQSSKKVYLLRISKNPLMIFVLKNAQWMPLSEKDPLPFFVKIL
RLPLSPAPSHLIKYKGKERTPWSPRTSLNGELITLPSSAWISVWPKDSSPLSEKNILI
YFSNNERLAFPLWTSIDTPTGTVIIKTIEMGHQAASSYPALPNF"
gene 27492..27818
/gene="rpmE2"
/locus_tag="CTDLC_0022"
/db_xref="GeneID:12388410"
CDS 27492..27818
/gene="rpmE2"
/locus_tag="CTDLC_0022"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L31"
/protein_id="YP_005811954.1"
/db_xref="GI:385244110"
/db_xref="GeneID:12388410"
/translation="MKKNTHPEYRQVLFVDSSTGYKFVCGSTYQTDKTEVFEGQEYPV
CYVSVSSSSHPFFTGSKKLVDAEGRVDKFLKRYSGIKQSAPKPETVVEDVLPKGKKKS
PAKKKK"
misc_feature 27492..27749
/gene="rpmE2"
/locus_tag="CTDLC_0022"
/note="50S ribosomal protein L31 type B; Reviewed; Region:
rpmE2; PRK01678"
/db_xref="CDD:234969"
gene 28006..29085
/gene="prfA"
/locus_tag="CTDLC_0023"
/db_xref="GeneID:12388411"
CDS 28006..29085
/gene="prfA"
/locus_tag="CTDLC_0023"
/codon_start=1
/transl_table=11
/product="Bacterial Peptide Chain Release Factor 1 (RF-1)"
/protein_id="YP_005811955.1"
/db_xref="GI:385244111"
/db_xref="GeneID:12388411"
/translation="MEIKVLECLKRLEEVEKQISDPNIFSNPKEYSSLSKEHARLSEI
KNAHESLVATKKILQDDKLALSTEKDPEIVAMLEEGVLVGEEAVERLSKQLENLLIPP
DPDDDLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASKGWQCEVLSTSESDLGGYKE
YVMGISGASVKRFLQYEAGTHRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFID
EKDLRIDTFRSSGAGGQHVNVTDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKA
RIRDAEVQKRAQEASAMRSAQVGSGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVME
GELDMITTALVTHVHRQLFGHEETA"
misc_feature 28006..29046
/gene="prfA"
/locus_tag="CTDLC_0023"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:234801"
misc_feature 28198..28536
/gene="prfA"
/locus_tag="CTDLC_0023"
/note="PCRF domain; Region: PCRF; pfam03462"
/db_xref="CDD:217573"
misc_feature 28627..28968
/gene="prfA"
/locus_tag="CTDLC_0023"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 29069..29941
/locus_tag="CTDLC_0024"
/db_xref="GeneID:12388412"
CDS 29069..29941
/locus_tag="CTDLC_0024"
/EC_number="2.1.1.-"
/codon_start=1
/transl_table=11
/product="Peptide release factor-glutamine
N5-methyltransferase"
/protein_id="YP_005811956.1"
/db_xref="GI:385244112"
/db_xref="GeneID:12388412"
/translation="MKKLLREASEYLLSRGIRFPQREAEDILMDLLEISSRSALHQAK
LSSEEQSLYWKRLRKRGDRCPTAYIHGKVHFLGVELQVTPQVLIPRQETEIFVEQIIG
YLQMHKEKTTFYDVCCGSGCIGLAVRKHCPHVRVTLSDISPEALAIAESNARSNALAV
DFLLGDLFDPFSFPADVLVCNPPYLSYKEFFESDPEVRCHEPWKALVGGVSGLEFYHR
IATHIHKILVSGGVGWLEIGSTQGEDIKQIFHAKGIRGRVLKDYAQLDRFFFLENQAN
DAVSSGEVSGFSER"
misc_feature 29069..29887
/locus_tag="CTDLC_0024"
/note="N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional; Region: PRK09328"
/db_xref="CDD:236467"
misc_feature 29402..29779
/locus_tag="CTDLC_0024"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(29414..29434,29486..29491,29561..29569,29609..29611)
/locus_tag="CTDLC_0024"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 29938..31284
/gene="ffh"
/locus_tag="CTDLC_0025"
/db_xref="GeneID:12388413"
CDS 29938..31284
/gene="ffh"
/locus_tag="CTDLC_0025"
/codon_start=1
/transl_table=11
/product="signal recognition particle subunit Ffh/Srp54"
/protein_id="YP_005811957.1"
/db_xref="GI:385244113"
/db_xref="GeneID:12388413"
/translation="MISSLSQKLSNIFSSLFTAKRVTEESISDSIREVRLALLDADVN
YQAVKDFIAKVKQKVVGEEVWKHVSPGQQFIKCLHEELSSSLASEQTAVSLRGCPAVI
LLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFF
RREGNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARVTSPCETLF
VMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKFEGCGE
KIKDLRPFNAQSMAERILGMGDTISLVDKMRECISEEENKELEEKLTKATFTYEDFHK
QILAFRRLGPLRKIMNMMPSFGGAKPSDKDLEESEKQMKRNEAIILSMTPEERKELVE
LSMSRMKRIAAGCGLTLGDVNQFRKQMMQSKKFFKGMTREKMEQMGKKMSGGNLWR"
misc_feature 29938..31254
/gene="ffh"
/locus_tag="CTDLC_0025"
/note="signal recognition particle protein; Provisional;
Region: PRK10867"
/db_xref="CDD:236780"
misc_feature 29962..30165
/gene="ffh"
/locus_tag="CTDLC_0025"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; smart00963"
/db_xref="CDD:214941"
misc_feature 30235..30756
/gene="ffh"
/locus_tag="CTDLC_0025"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:239389"
misc_feature 30253..30276
/gene="ffh"
/locus_tag="CTDLC_0025"
/note="P loop; other site"
/db_xref="CDD:239389"
misc_feature order(30349..30351,30511..30513,30676..30678,30685..30690)
/gene="ffh"
/locus_tag="CTDLC_0025"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:239389"
misc_feature 30913..31215
/gene="ffh"
/locus_tag="CTDLC_0025"
/note="Signal peptide binding domain; Region: SRP_SPB;
pfam02978"
/db_xref="CDD:202493"
gene 31275..31625
/gene="rpsP"
/locus_tag="CTDLC_0026"
/db_xref="GeneID:12388414"
CDS 31275..31625
/gene="rpsP"
/locus_tag="CTDLC_0026"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S16"
/protein_id="YP_005811958.1"
/db_xref="GI:385244114"
/db_xref="GeneID:12388414"
/translation="MALKIRLRQQGRKNHVVYRLVLADVESPRDGKYIELLGWYDPHS
EQNYQLKSERIFYWLNQGAELTEKAGALVKQGAPGVYAELMAKKVARRAVVRQKRRAY
RQRLAARKAEAAAK"
misc_feature 31275..>31529
/gene="rpsP"
/locus_tag="CTDLC_0026"
/note="30S ribosomal protein S16; Provisional; Region:
rpsP; PRK14522"
/db_xref="CDD:172988"
gene 31641..32699
/gene="trmD"
/locus_tag="CTDLC_0027"
/db_xref="GeneID:12388415"
CDS 31641..32699
/gene="trmD"
/locus_tag="CTDLC_0027"
/codon_start=1
/transl_table=11
/product="tRNA (Guanine-N(1)-)-methyltransferase"
/protein_id="YP_005811959.1"
/db_xref="GI:385244115"
/db_xref="GeneID:12388415"
/translation="MEIDILSLFPDYFASPLQATILGRAIKQGALSVRSRDIREFGLG
KWKQVDDSPYNGEGMLLMAEPVVQAIRSIRRKKSKVIYLSPQGQLLSAKKSRELASCS
HLVLLCGHYEGIDERALTAEVDEEISIGDYVLTNGCAAALVLVDALARFIPGVLGNQE
SAEYDSLENGLLEGPQYTRPRVFEGESVPEVLLCGDHQKIADWRKQVSLERTRERRPD
LYLQYFYGNSACLSTQEDLPRIEVVSPKTFSVVLEVQDLRKAKKFYSRMFGKECWDGD
KLFLLGKTSLYLQQTKETRGPTTVFIELETDHDFVRFLKRWEILGGELGEQGTGGFPL
RQVFDLDGHIWVVSCVQK"
misc_feature 31641..32696
/gene="trmD"
/locus_tag="CTDLC_0027"
/note="tRNA (guanine-N(1)-)-methyltransferase/unknown
domain fusion protein; Reviewed; Region: trmD; PRK01037"
/db_xref="CDD:234892"
misc_feature 31641..32309
/gene="trmD"
/locus_tag="CTDLC_0027"
/note="tRNA-(guanine-N1)-methyltransferase [Translation,
ribosomal structure and biogenesis]; Region: TrmD;
COG0336"
/db_xref="CDD:223413"
gene 32725..33090
/gene="rplS"
/locus_tag="CTDLC_0028"
/db_xref="GeneID:12388416"
CDS 32725..33090
/gene="rplS"
/locus_tag="CTDLC_0028"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L19"
/protein_id="YP_005811960.1"
/db_xref="GI:385244116"
/db_xref="GeneID:12388416"
/translation="MGNLIKELQDEQCRTDLADFCVGDTIRVATNISEGGKERVQVFQ
GTVMARKGGGAGETVSLHRVAYGEGMEKSFLLNSPKIVSIEVVKRGKVSRARLFYLRG
KTGKAAKVKELIGSRAAKK"
misc_feature 32728..33066
/gene="rplS"
/locus_tag="CTDLC_0028"
/note="ribosomal protein L19, bacterial type; Region:
rplS_bact; TIGR01024"
/db_xref="CDD:130096"
gene 33154..33807
/gene="rnhB"
/locus_tag="CTDLC_0029"
/db_xref="GeneID:12388417"
CDS 33154..33807
/gene="rnhB"
/locus_tag="CTDLC_0029"
/EC_number="3.1.26.4"
/codon_start=1
/transl_table=11
/product="Ribonuclease HII"
/protein_id="YP_005811961.1"
/db_xref="GI:385244117"
/db_xref="GeneID:12388417"
/translation="MKSTVEQAMLFEEKSIFENQAIEQGYSQVAGVDEAGRGPLAGPV
VAGACILPRGKVFLGIDDSKKLTPKQRRYLYELLLEDPEVDCGVGVISVERIDEINIL
EATKEAMVQAIASLRSTPDFLLVDGLFLPHKVPSLKIIKGDARSVSIAAASIIAKEYR
DELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHFGPCVYHRKSFSPVKESIQEGVCQ"
misc_feature 33241..33777
/gene="rnhB"
/locus_tag="CTDLC_0029"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature order(33250..33261,33454..33462,33469..33471,33529..33531,
33565..33567,33622..33624)
/gene="rnhB"
/locus_tag="CTDLC_0029"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature order(33250..33255,33529..33531,33580..33582)
/gene="rnhB"
/locus_tag="CTDLC_0029"
/note="active site"
/db_xref="CDD:187695"
gene 33798..34415
/gene="gmk"
/locus_tag="CTDLC_0030"
/db_xref="GeneID:12388418"
CDS 33798..34415
/gene="gmk"
/locus_tag="CTDLC_0030"
/EC_number="2.7.4.8"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_005811962.1"
/db_xref="GI:385244118"
/db_xref="GeneID:12388418"
/translation="MSVKVISPFSQDGVQCFPKLFIISAPAGAGKTTLTHMLQREFPD
AFEKTVSSTTRSARPGEVHGVDYLFVSEDDFKQSLDREDFLEWVFLFGTYYGTSKAEI
SRVLQKGKHCIAVIDVQGALALKKQMPAVTIFIQAPSQEELERRLNARDSEKDFQKKE
RLEHSAVEIAAASEFDYVVVNDDLITAYQVLRSIFIAEEHRMSHG"
misc_feature 33849..34409
/gene="gmk"
/locus_tag="CTDLC_0030"
/note="Guanylate kinase [Nucleotide transport and
metabolism]; Region: Gmk; COG0194"
/db_xref="CDD:223272"
misc_feature 33855..34373
/gene="gmk"
/locus_tag="CTDLC_0030"
/note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine triphosphate
(ATP) to guanosine monophosphate (GMP) to yield adenosine
diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
/db_xref="CDD:238026"
misc_feature order(33870..33872,33888..33890,33939..33941,33960..33962,
33969..33971,33996..33998,34065..34067,34080..34082)
/gene="gmk"
/locus_tag="CTDLC_0030"
/note="catalytic site [active]"
/db_xref="CDD:238026"
misc_feature order(33870..33872,33888..33890)
/gene="gmk"
/locus_tag="CTDLC_0030"
/note="G-X2-G-X-G-K; other site"
/db_xref="CDD:238026"
gene 34408..34710
/locus_tag="CTDLC_0031"
/db_xref="GeneID:12388419"
CDS 34408..34710
/locus_tag="CTDLC_0031"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811963.1"
/db_xref="GI:385244119"
/db_xref="GeneID:12388419"
/translation="MARKDRLTNERLNKLFDSPFSLVNYVIKQAKNKIARGDVRSSNV
AIEALNFLDLYGIQSEYAERDDRERHLSATGERRREQGFGTSRRKDPSLYNWSDVK"
gene 34710..36362
/gene="metG"
/locus_tag="CTDLC_0032"
/db_xref="GeneID:12388420"
CDS 34710..36362
/gene="metG"
/locus_tag="CTDLC_0032"
/EC_number="6.1.1.10"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA synthetase"
/protein_id="YP_005811964.1"
/db_xref="GI:385244120"
/db_xref="GeneID:12388420"
/translation="MESSRILITSALPYANGPLHFGHITGAYLPADVYARFQRLQGKE
VLYICGSDEYGIAITLNAELAGMGYQEYVDMYHKLHKDTFKKLGISVDFFSRTTNTYH
PAIVQDFYRNLQERGLVENQVTEQLYSEEEGKFLADRYVVGTCPKCGFDRARGDECQQ
CGADYEARDLKEPRSKLTGAALSLRDTEHAYLHLERMKEDLLAFVQGIYLRPHMRNFV
TDYIEHLRPRAVTRDLSWGIPVPDLENKVFYVWFDAPIGYISGTMDWAASIGDPEAWK
KFWLDDTVTYAQFIGKDNTSFHAAIFPAMEIGQSLPYKKVDALVTSEFLLLEGFQFSK
SDGNFIDMDAFLETYSLDKLRYVLAAIAPETSDSEFSFQEFKTRCNSELVGKYGNFVN
RVLAFAVKNGCTELSSPQLEQKDLDFISKSQKLAKDAAEHYAQYSLRKACSTIMELAA
LGNGYFNDEAPWKLAKEGNWNRVRAILFCACYCQKLLALISYPIMPETALKILEMIAP
HSLDLGSQDPDRLQSLWTDSFFDYSEEKFSLKEPELLFTMVE"
misc_feature 34716..36359
/gene="metG"
/locus_tag="CTDLC_0032"
/note="methionyl-tRNA synthetase; Reviewed; Region:
PRK12268"
/db_xref="CDD:237029"
misc_feature 34722..35819
/gene="metG"
/locus_tag="CTDLC_0032"
/note="catalytic core domain of methioninyl-tRNA
synthetases; Region: MetRS_core; cd00814"
/db_xref="CDD:173907"
misc_feature order(34740..34745,34749..34751,34863..34865,35460..35462,
35469..35474,35481..35483,35589..35591,35601..35603)
/gene="metG"
/locus_tag="CTDLC_0032"
/note="active site"
/db_xref="CDD:173907"
misc_feature 34767..34778
/gene="metG"
/locus_tag="CTDLC_0032"
/note="HIGH motif; other site"
/db_xref="CDD:173907"
misc_feature 35700..35714
/gene="metG"
/locus_tag="CTDLC_0032"
/note="KMSKS motif; other site"
/db_xref="CDD:173907"
misc_feature 35847..36227
/gene="metG"
/locus_tag="CTDLC_0032"
/note="Anticodon-binding domain of methionyl tRNA
synthetases; Region: Anticodon_Ia_Met; cd07957"
/db_xref="CDD:153411"
misc_feature order(35847..35849,35868..35873,35880..35885,35892..35897,
35904..35909,35916..35921,36066..36071,36075..36080,
36093..36095)
/gene="metG"
/locus_tag="CTDLC_0032"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153411"
misc_feature order(35868..35870,35880..35885,35892..35897,35904..35909,
35916..35921,36075..36077,36093..36095)
/gene="metG"
/locus_tag="CTDLC_0032"
/note="anticodon binding site; other site"
/db_xref="CDD:153411"
gene complement(36502..38742)
/gene="recD_1"
/locus_tag="CTDLC_0033"
/db_xref="GeneID:12388421"
CDS complement(36502..38742)
/gene="recD_1"
/locus_tag="CTDLC_0033"
/EC_number="3.1.11.5"
/codon_start=1
/transl_table=11
/product="Exodeoxyribonuclease V alpha chain"
/protein_id="YP_005811965.1"
/db_xref="GI:385244121"
/db_xref="GeneID:12388421"
/translation="MGCEEKLSGILELILPEDPLSDQTGYAFLRVPYKNSLVTVCGHL
PLSLFKIGSSVDLTGHWSVDASGALVFRFTSAATYSPDSGIIAYLNAQIKGVGPKLAQ
KIVSTFREDTLTVLDSCPSKLVEVDGISPARCEDFSKQLQEQRDLRHALLFLQRHGIA
IHYGLRLYKKYQNQTIEKVCQDPFLLAKEMYGIGFKTADLIATCLGVPLNSPNRIVAG
IQYSLDELQEEGHTCYPLNDFIVLVEKLLNEEAPEEIIRKEEIRTQIHFLSRQKTVYV
KELEQDTYIWSRQLFLAEQQIAIDIRRLLFSSKRIRSINTQEAILEVENLLDLKLEEK
QKEALHASSSQKIHIISGGPGTGKSTIIRAILSIFEKISSPKKIILAAPTGKAAKRMT
EITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDLVIVDESGMIDTILLQRFLAALPD
HAILILIGDVHQLPSVGPGNVLKDLILSHHIEVTYLTKIFRQLQNSNIITNAHKVNQG
EFPVLNSSSGKKDFLFFQKEDPEEAIKHIIHLVSDFVPKKFGIFTKDIQVLAPMRKGV
LGILNLNRELKAALNPNKLFIQGKFHSFSTGDRVMQTRNNYNKEVFNGDIGYVTSIDL
STKSLIVCVDGRYISYSQAELNDLIPAYATSIHKYQGSETSCIILPIHTSHYVMLYRN
LLYTAITRGKKLVILVGTKKAVAIAVRNNKVQHRCTGLQQAMHSLLNKPTPLFSPYTI
CRPSLG"
misc_feature complement(36577..38724)
/gene="recD_1"
/locus_tag="CTDLC_0033"
/note="helicase, putative, RecD/TraA family; Region:
recD_rel; TIGR01448"
/db_xref="CDD:233418"
misc_feature complement(37267..37722)
/gene="recD_1"
/locus_tag="CTDLC_0033"
/note="AAA domain; Region: AAA_30; pfam13604"
/db_xref="CDD:222258"
misc_feature complement(36649..36963)
/gene="recD_1"
/locus_tag="CTDLC_0033"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:222209"
gene complement(38990..40015)
/gene="ytfF"
/locus_tag="CTDLC_0034"
/db_xref="GeneID:12388422"
CDS complement(38990..40015)
/gene="ytfF"
/locus_tag="CTDLC_0034"
/codon_start=1
/transl_table=11
/product="Transporter, drug/metabolite exporter family"
/protein_id="YP_005811966.1"
/db_xref="GI:385244122"
/db_xref="GeneID:12388422"
/translation="MMSSPHPMSSSRNTPLGVFYSLLACFYWGMVFVIPSMLGNFADL
DIVLTRYSVFGICSLITILYKRSNIFKTVPFFLWKKGILWAFLINIAYYFGIAQAVRY
SGSAVTVIIAGLAPIAILFYSNIKKKMLSYSFLLSMSGIIVVGIILSNVSEFQSESSS
SLPLYLLGLGCVTAATSIWAGYIICNHDFLEQHSEISPDTWCHMLGISSLIICLPLII
LGDTFGITHVTRNFLFHTPLSERCLFIVLCSAMGIFSSSRAIAAWNKASLHLSTALLG
ALLIFEPIFGWILSYLCKREMPSFQEGLGFFLMLGASLCLLLAQKKASEQETPSETLI
TTESDAN"
misc_feature complement(<39647..39982)
/gene="ytfF"
/locus_tag="CTDLC_0034"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
misc_feature complement(39575..39877)
/gene="ytfF"
/locus_tag="CTDLC_0034"
/note="Multidrug resistance efflux transporter; Region:
EmrE; pfam13536"
/db_xref="CDD:222207"
gene complement(41092..42303)
/locus_tag="CTDLC_0036"
/db_xref="GeneID:12388423"
CDS complement(41092..42303)
/locus_tag="CTDLC_0036"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811967.1"
/db_xref="GI:385244123"
/db_xref="GeneID:12388423"
/translation="MFPIECHTLQTSFKQVLSLVAEKITTKAFVIFSVLFSLIIGFIA
SCGFLFAGPPAFIASGLCFALLVSVVSFFGCQKLIPYGIQHLMSYVKSIPSLSSSLID
FLKTESKSISSLYPNPGLKECFKGASPKYKKFFFDHPEKLLSAAFTDWTPQIIPSDSG
QPRTIILSHSSLPFSLTLSTLDFETLHTHLIKSNALTCRVGYAHQLPSGNPVMREAKE
GVLQQHYDTGNETFFISIQESKQLQQEELFKKLFSHYAQITEHNLSNEILLLEPLKTP
LHTPKARTLELLALFCALEQLRYTKVADWRTKKLAPIFPLDYEDFFTLFMKKQHYTLP
GNVSNMRILSPVRPVSETALTTIIISGLEEEDKLGLLGQVQPFLFDAEEAHPQRGESI
LIQNVLDDITQ"
gene complement(42730..42801)
/locus_tag="CTDLC_r037"
/db_xref="GeneID:12388424"
tRNA complement(42730..42801)
/locus_tag="CTDLC_r037"
/product="tRNA-Asn"
/db_xref="GeneID:12388424"
gene complement(42865..43215)
/locus_tag="CTDLC_0038"
/db_xref="GeneID:12388425"
CDS complement(42865..43215)
/locus_tag="CTDLC_0038"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005811968.1"
/db_xref="GI:385244124"
/db_xref="GeneID:12388425"
/translation="MSMASKKQTSWFRYMEECVIRSWWLILCLLGGGFVYDRAISQLC
TQELRLQQRMFHLKSHLKEALEKQQELSTHLASWDDPKVIELALIHKLGLVPKGYEKI
CFQNSQKTKRNHRK"
misc_feature complement(<42895..43038)
/locus_tag="CTDLC_0038"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
gene complement(43231..43803)
/gene="dcd"
/locus_tag="CTDLC_0039"
/db_xref="GeneID:12388426"
CDS complement(43231..43803)
/gene="dcd"
/locus_tag="CTDLC_0039"
/EC_number="3.5.4.13"
/codon_start=1
/transl_table=11
/product="Deoxycytidine triphosphate deaminase"
/protein_id="YP_005811969.1"
/db_xref="GI:385244125"
/db_xref="GeneID:12388426"
/translation="MGIKEDNWIRKMAIEEGMIEPFADSQVKLHPETGEKLISYGLSS
YGYDLRISREFKVFTNVYNSLVDPKCFTEDALISIVDDVCIIPPNSFALARSVEYFRI
PRNVLTVCIGKSTYARCGLIVNVTPFEPEWEGYVTIEISNTTPLPAKVYANEGIAQVL
FFEGDATCDVSYAERQGKYQKQQGITIPFV"
misc_feature complement(43321..43668)
/gene="dcd"
/locus_tag="CTDLC_0039"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature complement(order(43330..43332,43342..43344,43351..43365,
43375..43377,43381..43383,43387..43389,43393..43395,
43414..43416,43423..43425,43435..43443,43456..43473,
43477..43479,43525..43527,43531..43536,43549..43551,
43666..43668))
/gene="dcd"
/locus_tag="CTDLC_0039"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature complement(order(43393..43398,43408..43410,43417..43425,
43459..43467))
/gene="dcd"
/locus_tag="CTDLC_0039"
/note="active site"
/db_xref="CDD:143638"
gene 43891..44043
/locus_tag="CTDLC_003901"
/db_xref="GeneID:12388427"
CDS 43891..44043
/locus_tag="CTDLC_003901"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811970.1"
/db_xref="GI:385244126"
/db_xref="GeneID:12388427"
/translation="MQLYEKTQLFNAFVQRFFSLNSLLYREKEGLEIGESLLTSAAGG
CQNTIS"
gene 44085..45089
/gene="ruvB"
/locus_tag="CTDLC_0040"
/db_xref="GeneID:12388428"
CDS 44085..45089
/gene="ruvB"
/locus_tag="CTDLC_0040"
/note="protein RuvB"
/codon_start=1
/transl_table=11
/product="Holliday junction DNA helicase"
/protein_id="YP_005811971.1"
/db_xref="GI:385244127"
/db_xref="GeneID:12388428"
/translation="MTHKISVLHQDKKFDFSLRPKKLTEFCGQKQLKERLDLFLRAAV
QRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKGLVIASGPQLLKPSDLIGLLTGLQEG
DIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSGPGARSVRLDLAPFTLVGATTRAG
MLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLAIEANQETLLEIARRARGTPRLA
NNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLNEIDIKLLSVMIDFYQGGPV
GMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATPLAYEHLNRNPKDRWGEE
"
misc_feature 44085..45068
/gene="ruvB"
/locus_tag="CTDLC_0040"
/note="Holliday junction resolvasome, helicase subunit
[DNA replication, recombination, and repair]; Region:
RuvB; COG2255"
/db_xref="CDD:225164"
misc_feature 44166..44594
/gene="ruvB"
/locus_tag="CTDLC_0040"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 44253..44276
/gene="ruvB"
/locus_tag="CTDLC_0040"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(44256..44279,44406..44408,44553..44555)
/gene="ruvB"
/locus_tag="CTDLC_0040"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 44394..44411
/gene="ruvB"
/locus_tag="CTDLC_0040"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 44589..44591
/gene="ruvB"
/locus_tag="CTDLC_0040"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 44838..45062
/gene="ruvB"
/locus_tag="CTDLC_0040"
/note="Holliday junction DNA helicase ruvB C-terminus;
Region: RuvB_C; pfam05491"
/db_xref="CDD:203257"
gene 45025..45903
/locus_tag="CTDLC_0041"
/db_xref="GeneID:12388429"
CDS 45025..45903
/locus_tag="CTDLC_0041"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811972.1"
/db_xref="GI:385244128"
/db_xref="GeneID:12388429"
/translation="MQPLWHMNILTGTLRTGGEKNKVKKLNLLVLLGVFCGVSGVGDA
DVKVSDALLQSILVEPKIRVLLLSESTTALIEAKGAFSVFGDGELLRVSSQGQRCAAH
ALYGGIRWGENYPNVECLKIEPLDGAASLFVNGIQYRGAIYIHRTDRSCLFIVNELAV
EDYLKSTLSVKYLKELDKEALSACVILERTALYERLLAGNSHSFWHVNAQEDRYGGFG
VTSQFYGVEEAVDWTSRLVLDNPEGLVFNADYLLRANVDRLAIEGYNARQILEKFYKD
ADLVVIESWEDDCKGA"
gene complement(45965..48037)
/gene="glgX"
/locus_tag="CTDLC_0042"
/db_xref="GeneID:12388430"
CDS complement(45965..48037)
/gene="glgX"
/locus_tag="CTDLC_0042"
/EC_number="3.2.1.68"
/codon_start=1
/transl_table=11
/product="Isoamylase"
/protein_id="YP_005811973.1"
/db_xref="GI:385244129"
/db_xref="GeneID:12388430"
/translation="MCLSPSLLFISSVRFLLNLLVLVFMESLSVRSTIPLPLGAKKLS
ADRYRFSLFSSQAQQVTLVLLDPLSEIHEIPLSSTDHRTGAIWHIEIAGISSEWSYAY
KLRGTDLSSQKFATDSYIADPYSKNIYSPQLFGSPKQEKDYAFSYLKHEDFDWEGDTP
LHLPKENYFIYEMHVRSFTRDPSSQVSHPGTFLGIIEKIDHLKQLGVHAVELLPIFEF
DETVHPFKNQDFPHLCNYWGYSSVNFFCPSRRYTYGADPCAPAREFKTLVKALHRAGI
EVILDVVFNHTGFEGTSCPLPWIDLESYYMVNDHGDLMNFSGCGNTVNTNTPTTLKWI
LDALRYWVQEMHVDGFRFDLASVFSRDPQGVPLPLTPILQAISSDSILSETKLIAEPW
DAGGLYQLGHFPSISTRWSEWNGCYRDHVKAFLNGDAHQVSSFASRISGSHDIYPNGK
PTNSINYICSHDGFTLYDTVAYNDKHNEENGEYNRDGTSANYSYNFGCEGETTDPTIC
ALRERQMKNFFLALFLSQGIPMIQSGDEYGHTAYGNNNHWCLDTKINYFLWDRLAERK
ELFSFLCQVIALRKAYTELFNTSFLSEDTITWLNTKGSPREWGADHYLAFELKHLNYS
LFVAFYSGNERIEISLPKPRKEHLAYEKIVDSTTGFFSQILSPKLSLEPYSSLVAISR
RKTSLESR"
misc_feature complement(45977..47950)
/gene="glgX"
/locus_tag="CTDLC_0042"
/note="Type II secretory pathway, pullulanase PulA and
related glycosidases [Carbohydrate transport and
metabolism]; Region: PulA; COG1523"
/db_xref="CDD:31712"
misc_feature complement(47522..47932)
/gene="glgX"
/locus_tag="CTDLC_0042"
/note="N-terminal Early set domain associated with the
catalytic domain of Glycogen debranching enzyme and
bacterial isoamylase (also called glycogen
6-glucanohydrolase); Region: E_set_GDE_Isoamylase_N;
cd02856"
/db_xref="CDD:199886"
misc_feature complement(46292..47581)
/gene="glgX"
/locus_tag="CTDLC_0042"
/note="Alpha amylase catalytic domain found in glycogen
debranching enzymes; Region: AmyAc_Glg_debranch; cd11326"
/db_xref="CDD:200465"
misc_feature complement(order(46652..46657,46868..46870,46976..46981,
46985..46987))
/gene="glgX"
/locus_tag="CTDLC_0042"
/note="active site"
/db_xref="CDD:200465"
misc_feature complement(order(46652..46654,46868..46870,46979..46981))
/gene="glgX"
/locus_tag="CTDLC_0042"
/note="catalytic site [active]"
/db_xref="CDD:200465"
gene complement(48083..48586)
/locus_tag="CTDLC_0043"
/db_xref="GeneID:12388431"
CDS complement(48083..48586)
/locus_tag="CTDLC_0043"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811974.1"
/db_xref="GI:385244130"
/db_xref="GeneID:12388431"
/translation="MSRQNAEENLKNFAKELKLPDVAFDQNNTCILFVDGEFSLHLTY
EEHSDRLYVYAPLLDGLPDNPQRRLALYEKLLEGSMLGGQMAGGGVGVATKEQLILMH
CVLDMKYAETNLLKAFAQLFIETVVKWRTVCSDISAGREPTVDTMPQMPQGGGGGIQP
PPAGIRA"
misc_feature complement(48197..48559)
/locus_tag="CTDLC_0043"
/note="Tir chaperone protein (CesT) family; Region: CesT;
pfam05932"
/db_xref="CDD:218814"
gene 49052..49525
/gene="ssb"
/locus_tag="CTDLC_0044"
/db_xref="GeneID:12388432"
CDS 49052..49525
/gene="ssb"
/locus_tag="CTDLC_0044"
/codon_start=1
/transl_table=11
/product="ssDNA-binding protein"
/protein_id="YP_005811975.1"
/db_xref="GI:385244131"
/db_xref="GeneID:12388432"
/translation="MLFGYLVGFLAADPEERMTSGGKRVVVLRLGVKSRVGSKDETVW
CRCNIWNNRYDKMLPYLKKGSSVIVAGELSLESYVGRDGSPQASISVSVDTLKFNSGS
SRPDARGSDEGRQRANDNVSIGFDGESLDTDSALDKEVYAGFGEDQQYASEDVPF"
misc_feature 49052..49522
/gene="ssb"
/locus_tag="CTDLC_0044"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:223702"
misc_feature 49067..49345
/gene="ssb"
/locus_tag="CTDLC_0044"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:239942"
misc_feature order(49067..49072,49145..49153,49178..49180,49184..49186,
49247..49249,49274..49276,49307..49309,49316..49318)
/gene="ssb"
/locus_tag="CTDLC_0044"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239942"
misc_feature order(49076..49084,49100..49102,49130..49132,49151..49156,
49172..49177,49181..49183,49187..49189,49193..49195,
49199..49201,49238..49243,49265..49267,49271..49273,
49277..49282,49319..49321,49325..49327)
/gene="ssb"
/locus_tag="CTDLC_0044"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:239942"
misc_feature order(49247..49249,49253..49255,49259..49261,49340..49342)
/gene="ssb"
/locus_tag="CTDLC_0044"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239942"
gene 49866..51365
/gene="pepA"
/locus_tag="CTDLC_0045"
/db_xref="GeneID:12388433"
CDS 49866..51365
/gene="pepA"
/locus_tag="CTDLC_0045"
/EC_number="3.4.11.1"
/codon_start=1
/transl_table=11
/product="cytosol aminopeptidase"
/protein_id="YP_005811976.1"
/db_xref="GI:385244132"
/db_xref="GeneID:12388433"
/translation="MVLLYSQASWDKRSKADALVLPFWMKNSKAQEAAVVDEDYKLVY
QNALSNFSGKKGETAFLFGNDHTKEQKIVLLGLGKSEEVSGTTVLEAYAQATTVLRKA
KCKTVNILLPTISQLRFSVEEFLTNLAAGVLSLNYNYPTYHKVDTSLPFLEKVTVMGI
VSKVGDKIFRKEESLFEGVYLTRDLVNTNADEVTPEKLAAVAKDLAGEFASLDVKILD
RKAILKEKMGLLAAVAKGAAVEPRFIVLDYQGKPKSKDRTVLIGKGVTFDSGGLDLKP
GKAMITMKEDMAGAATVLGIFSALASLELPINVTGIIPATENAIGSAAYKMGDVYVGM
TGLSVEIGSTDAEGRLILADAISYALKYCNPTRIIDFATLTGAMVVSLGESVAGFFAN
NDVLARDLAEASSETGEALWRMPLVEKYDQALHSDIADMKNIGSNRAGSITAALFLQR
FLEDNPVAWAHLDIAGTAYHEKEELPYPKYATGFGVRCLIHYMEKFLSK"
misc_feature 49866..51350
/gene="pepA"
/locus_tag="CTDLC_0045"
/note="multifunctional aminopeptidase A; Provisional;
Region: PRK00913"
/db_xref="CDD:234863"
misc_feature 49911..51341
/gene="pepA"
/locus_tag="CTDLC_0045"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:238247"
misc_feature order(50010..50012,50049..50051,50076..50078,50121..50123,
50424..50426,50430..50438,50571..50573,50577..50579,
50664..50666,50682..50684,50697..50699,50706..50708,
50715..50720,50814..50816,50820..50831,50835..50837,
50841..50855,50871..50873,50877..50879,50889..50891,
51000..51014,51021..51023,51099..51104,51108..51110,
51123..51125,51129..51134,51147..51149,51153..51155,
51180..51185,51189..51191,51300..51302)
/gene="pepA"
/locus_tag="CTDLC_0045"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:238247"
misc_feature order(50652..50654,50667..50669,50688..50690,50721..50723,
50898..50900,50904..50906,50910..50912,50985..50987)
/gene="pepA"
/locus_tag="CTDLC_0045"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:238247"
misc_feature order(50652..50654,50667..50669,50721..50723,50898..50900,
50904..50906)
/gene="pepA"
/locus_tag="CTDLC_0045"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:238247"
gene 51963..52115
/gene="hctB"
/locus_tag="CTDLC_0046"
/db_xref="GeneID:12388434"
CDS 51963..52115
/gene="hctB"
/locus_tag="CTDLC_0046"
/codon_start=1
/transl_table=11
/product="Histone H1-like protein HC2"
/protein_id="YP_005811977.1"
/db_xref="GI:385244133"
/db_xref="GeneID:12388434"
/translation="MKKHKHTAACGRVAASGVKVCASAAKRKTNPNRSRTAHSWRQQL
MKLVAR"
gene 52177..53214
/locus_tag="CTDLC_0047"
/db_xref="GeneID:12388435"
CDS 52177..53214
/locus_tag="CTDLC_0047"
/EC_number="2.7.7.7"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta"
/protein_id="YP_005811978.1"
/db_xref="GI:385244134"
/db_xref="GeneID:12388435"
/translation="MYLLAESKCLKKIKSGNKKNNPRIIGFWRWIMGNSQNSIHITST
KDFVQYIERERFRVIVIGSSSLEDKDIFSELYISGRKSFFDGQRLLQQELLSWTDHFG
LFASQETIGIYQAEKMSSSLQEFIIDYTRHPNPNLTLFLFTNKAELFSSLSSKLSNAL
CLSLFGEYFAERDARIAQVLIKRSKESQLSCSLGVAKIFVSKFPQTGLFEILSEFQKL
ICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMGEEPL
AILNFLRSQYLLGLRAVAEQSKERKTQIFIAAGEPALLNGLNLFFHTESLIKNNFQDP
MLSLEMLVSRL"
misc_feature 52288..53211
/locus_tag="CTDLC_0047"
/note="hypothetical protein; Provisional; Region:
PRK05907"
/db_xref="CDD:135654"
gene 53303..54022
/gene="yraL"
/locus_tag="CTDLC_0048"
/db_xref="GeneID:12388436"
CDS 53303..54022
/gene="yraL"
/locus_tag="CTDLC_0048"
/codon_start=1
/transl_table=11
/product="Tetrapyrrole (Corrin/Porphyrin) methylase family
protein"
/protein_id="YP_005811979.1"
/db_xref="GI:385244135"
/db_xref="GeneID:12388436"
/translation="MAMALYLLPNTLGSKRSEDLPFSVGEIVRNKIQGLIVESDRGGR
LFLSLWKVEEPHRFPLAVMSKNDTSVKACDFYLEPILKKQESWGVISDAGLPCIADPG
AKLVRRARTLGIPVHAVSGPCSITQALMLSGLPGQNFTFHGYLPQNPKERSRYLRSCS
GKSHTQICIETPYRNPYTFDALLDQLPDHGELCVAIDLMGDQEYVSMRSIAVWNQSSD
IEEVCERLKKVPAIFLFITSF"
misc_feature 53303..54007
/gene="yraL"
/locus_tag="CTDLC_0048"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:30661"
misc_feature 53315..54007
/gene="yraL"
/locus_tag="CTDLC_0048"
/note="Uncharacterized subfamily of the tetrapyrrole
methylase family similar to ribosomal RNA small subunit
methyltransferase I (RsmI); Region: RsmI_like; cd11649"
/db_xref="CDD:212508"
misc_feature order(53336..53338,53579..53587,53594..53599,53669..53674,
53807..53809,53885..53887,53891..53896,53990..53998)
/gene="yraL"
/locus_tag="CTDLC_0048"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212508"
misc_feature order(53360..53371,53375..53377,53585..53602,53609..53614,
53618..53623,53654..53656,53660..53671,53675..53680,
53687..53692,53717..53731)
/gene="yraL"
/locus_tag="CTDLC_0048"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212508"
gene 54113..55585
/locus_tag="CTDLC_0049"
/db_xref="GeneID:12388437"
CDS 54113..55585
/locus_tag="CTDLC_0049"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811980.1"
/db_xref="GI:385244136"
/db_xref="GeneID:12388437"
/translation="MNKKIIKERVSSSVPSTPSDQPADPTNPVTKMLFECKLSQNQGD
ASADVDAMVTTAHVKLDAKNQQVRQVAKGEEDQNVIVLSQLEGYLQKGSRSIAGLFLP
TSGGPMVGDINMGTSPGNTIKGLPSSWGSAMFLGNEYAASVGIVQDVVGEHGARLDDL
IERITKYSGSGEGSMTKLLEDLGSPKESQSGQTPSVTLEKPTDAKWLLLSAKNAMTGT
LRFEKKQGALPTTPDPTITNLKARGLGTIGTATPTDKLQNIVSVADLTTILKDLQENA
PSEGTGSDTGSDVGSGSGSGTDSGSGGVAGVSVSAATTSTFPEWTGQEVPYLVEQSPD
SGSGSPSVQNPLKSSNADNYIKKDNGTYSLLRRGLYLITFAYEFSSPTQNGAVTCTGT
LRKTTTPESGDVGAQPTSGDATAPTDPEPSPAFSVVGSSDGKTVVGSAYILVPGDKAL
SEHTLTLALTTNENTEVNPTSVTDPASKSYVAISYMGAGY"
misc_feature <54245..54439
/locus_tag="CTDLC_0049"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cl00322"
/db_xref="CDD:241783"
gene complement(55644..57254)
/locus_tag="CTDLC_0050"
/db_xref="GeneID:12388438"
CDS complement(55644..57254)
/locus_tag="CTDLC_0050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811981.1"
/db_xref="GI:385244137"
/db_xref="GeneID:12388438"
/translation="MNDTKNNISSSFWNPNKVVTKVLLKVSETGIESTPGIVKHNQLI
TQSENPTDPTDAVTFKYLKENYTKENDPNPGFLPTTGGTMTGDIDMQGNNVTDIVMYT
NGQQNPTDDSAVTIGYLNEKADEIKSNDQITTAVAGLSNINSQISTLHQLLGIAEDPD
TVTNPDLLKTSGGTVYEDIDMSSNTVSDLGTPTNKDTKSAINVEFVQAKITSPQMAFL
KNNDTNLSNITVSEYFNWLQDPTQAPTPEPDPDPEPAPEPEPDTSDSSGSGSENPADP
APTNPSDSNAQNNPTPSSNGATASIRKLAATTTTVPTDTEIAPAAEDPNLPNTTFSEK
SPLWEEFFSFSDSSRSEMVIQKTGILTFSMQGTWENPSSSQTPSTDPISLELTVTPPT
TDTPPESPPSPPEAPAPEATPSPTNNNLTASITKTFSRKYNLSATPSPTPTTPTEPTT
ITKTLSLSSGQSCTLQIPVQATRSVLKLKYVNPNNNSSGGSSGSGGSSQPETTPTGIT
LQSFSWSLVLTPGEITKATSTPSTPSQP"
gene complement(57358..58920)
/locus_tag="CTDLC_0051"
/db_xref="GeneID:12388439"
CDS complement(57358..58920)
/locus_tag="CTDLC_0051"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811982.1"
/db_xref="GI:385244138"
/db_xref="GeneID:12388439"
/translation="MNKKERINKKNASTKFQRSTPTRALLSIGSQQLSSFTKLSFDGQ
AKLTGVATPTRDTDVVPLQYLQARYLSKNDPNPGYLPIHGGNMTGNINMGTHSVFNLK
QPEKPKIELPSETDKPKDPREEDGFAEKTAEEQEQEIKEYNTKLAEYQKKIDDYNAAW
EAFYSEAATVKYVKGIVDKILNNDKLSTALNSATEVEKKIALAQKALGIEITINPDAD
TNPDTDQETPDPAPVADTEEKESPPLSYNDLPSVIKNSQFVVTQSQNKITGDLKMTNA
QIANIKTPDTGDSNYAANVTYLESKLKQPQRAFLSNTLPTESSSSISLNGHIPWLSTT
NGSSSPAEPDFKSKLADQCFDTSSQENLKVKTAGLLVLSVRGTWSPTTSPITNGSTPT
PTTISVNLTVTPDNSSRTNTSSSGSDSSGDASATTLTIPLTLYSGESVQLQLPITTTS
SVKIATTTSQTSNGGSDTSSQITLSSWSWEAALYPTDVTVTNKTTPPTTETPSSPSPS
SPNSESTEGQTP"
gene complement(58974..60110)
/gene="hemN_1"
/locus_tag="CTDLC_0052"
/db_xref="GeneID:12388440"
CDS complement(58974..60110)
/gene="hemN_1"
/locus_tag="CTDLC_0052"
/EC_number="1.3.99.22"
/codon_start=1
/transl_table=11
/product="Oxygen-independent coproporphyrinogen-III
oxidase"
/protein_id="YP_005811983.1"
/db_xref="GI:385244139"
/db_xref="GeneID:12388440"
/translation="MNGKTPLALYIHIPFCSKKCHYCSFYTIPYKEELMRSYCEAVIK
EGLKKLAPLRCSHYIDTVFFGGGTPSLVPPALIQDILVALEAQHATEITLEANPENLS
LEYIQALALTSINRISIGVQTFNDPLLKLLGRTHSSSKAIEAFMLCSQYGFSNVSADL
IYGLPTQSISDFIVDLHQAISLPIQHISIYNLTIDPHTSFYKHRKRILPSIADDDSLA
EMALAAEELLENQGFTRYELASYAKNQAASKHNTYYWTAKPFLGLGVSASQYLHGIRS
KNLSRISHYLRAAHQHLPTLESMEELPPNERIKETLALRLRLCDPIPFGVFPQELIDE
ILMHPSIGSLFTKDDKAFSLNKKGRLFHDSIAEEIMASSFSFSK"
misc_feature complement(59001..60110)
/gene="hemN_1"
/locus_tag="CTDLC_0052"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK06294"
/db_xref="CDD:180518"
misc_feature complement(59484..60065)
/gene="hemN_1"
/locus_tag="CTDLC_0052"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(59535..59540,59628..59630,59751..59753,
59820..59828,59907..59912,59916..59918,60039..60047,
60051..60053,60057..60059,60063..60065))
/gene="hemN_1"
/locus_tag="CTDLC_0052"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(59031..59207)
/gene="hemN_1"
/locus_tag="CTDLC_0052"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(60100..60597)
/locus_tag="CTDLC_0053"
/db_xref="GeneID:12388441"
CDS complement(60100..60597)
/locus_tag="CTDLC_0053"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811984.1"
/db_xref="GI:385244140"
/db_xref="GeneID:12388441"
/translation="MALRGFPVSIIEQDYLRMKSERLKKLESELHDLTQWMQLGLVPK
KEIERHQEEIRLLESKILEEKERLQLLKESGEIKEYVTPRRTPAKTIYPDGPSVSDVE
FVESSDTEVDLDAGDTIEIDLGDEAREESGNELDYSSEDDEDPFSDRNRWRRGGIIDP
DANEW"
gene 60878..63595
/gene="sucA"
/locus_tag="CTDLC_0054"
/db_xref="GeneID:12388442"
CDS 60878..63595
/gene="sucA"
/locus_tag="CTDLC_0054"
/EC_number="1.2.4.2"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate dehydrogenase E1 component"
/protein_id="YP_005811985.1"
/db_xref="GI:385244141"
/db_xref="GeneID:12388442"
/translation="MDSDFARHVHSSDIDWIESLFERFEKHEPMDSSWKYFFEGYQVG
KTEGSPTESSHDQVFTSLQEKKAHSLLMIYRYYGYLQGQVSPISSSEESSLVTEKVRN
FDPQEEIPSLGLLPQSYVRIADFIQVLKEKYCRSIAVETLNCSPEIQEYIWKLMEGEK
PSLTKEVLLARYRDVKRAVAFEEFLQVKFTGQKRFSLEGGESLVPMLEHLIACGVKQG
INRYVMGMPHRGRLNVLANIFGKPYRQIFMEFEDAPQIRGLETVGDVKYHKGYVANRP
EQNVMMALLPNPSHLESVDPVVEGAVAAIQHQGEAGKEQACLAVLMHGDAALAGQGVV
YETFQLSGIPGYSTEGTVHIVVNNQMGFTAQPRESRSTPYCTDIAKMMGIPVFRVNGE
DILACLQVMEYAIHIRERFHCDVIIDLCCYRKYGHNESDDPFVTAPFLYEEIKKKKQG
SELFKEILLHHPEWNISSDELERIDTEIAHVLNQEYASLKDPGVERLDKKECMHCTRM
AAGELLVDNVDTSLDKEALFDLSAKLCDIPEHFSPHAKIRSLLNKRMSMADGEIGYDW
GMAEEVAFASLLQEGFSLRLSGQDSIRGTFSQRQLVWTDVQTGDTFSPLYHLSPSQGS
VELYNSPLSEYAVLGFEYGYAQQAEKTLVIWEAQFGDFSNGAQIIFDQYISSGIQKWD
LHSDVVVLLPHGYEGQGPEHSSARIERYLQLASDWNFQVVLPSTPVQYFRILREHTKR
DLSLPLIIFSPKMLLRHPQCVSSIAEFGMKGGFKPFLEDENPNYHAKVLVLCSGKIYY
DYRASLPKDLEYRFACIRVESLYPLYLEDLLVLISKYTEVHHYVWLQEEPQNMGAFSY
FALATDEIFPSKLQCVCRPRSSSTATGSASLSQKELSTLMETLFSIGRE"
misc_feature 60878..63583
/gene="sucA"
/locus_tag="CTDLC_0054"
/note="2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production and
conversion]; Region: SucA; COG0567"
/db_xref="CDD:223641"
misc_feature 61418..62200
/gene="sucA"
/locus_tag="CTDLC_0054"
/note="Thiamine pyrophosphate (TPP) family, E1 of
OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the 2-oxoglutarate
dehydrogenase multienzyme complex (OGDC). OGDC catalyzes
the oxidative decarboxylation of...; Region:
TPP_E1_OGDC_like; cd02016"
/db_xref="CDD:238974"
misc_feature order(61748..61750,61847..61858,61949..61951,61955..61957)
/gene="sucA"
/locus_tag="CTDLC_0054"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:238974"
misc_feature 62564..63151
/gene="sucA"
/locus_tag="CTDLC_0054"
/note="Transketolase, pyrimidine binding domain; Region:
Transket_pyr; pfam02779"
/db_xref="CDD:217226"
gene 63599..64696
/gene="sucB_1"
/locus_tag="CTDLC_0055"
/db_xref="GeneID:12388443"
CDS 63599..64696
/gene="sucB_1"
/locus_tag="CTDLC_0055"
/EC_number="2.3.1.61"
/codon_start=1
/transl_table=11
/product="Dihydrolipoamide succinyltransferase component
(E2) of 2-oxoglutarate dehydrogenase complex"
/protein_id="YP_005811986.1"
/db_xref="GI:385244142"
/db_xref="GeneID:12388443"
/translation="MSIEVRIPNIAESISEVTISALLIPSGDLVQENQGILEIESDKV
NQLIYAPCSGRVEWSVSVGDTVAVGSVVGIISEAEKSQDTAPIHEQMPFSLVEQESDA
QIIAFPSSVRQDPPAEGKTFVPLKEIQPASSDHRESRESMSAIRKTISRRLVQSLHDS
AMLTTFNEIHMGPLIALRKERQEDFVAKYGVKLGFMSFFVRAVVDSLKKYPRVNAYIE
DNEIVYRHYYDISIAIGTDRGLVVPVIRNCDQLSSGEIELQLADLASRAREGKLAIHE
LEGGGFTITNGGVYGSLLSTPIINPPQVGILGMHKIEKRPVVREDAIVIADMMYVAMS
YDHRIIDGKEAVGFLVNVKEQLEQPELLLKM"
misc_feature 63599..64657
/gene="sucB_1"
/locus_tag="CTDLC_0055"
/note="dihydrolipoamide succinyltransferase; Validated;
Region: PRK05704"
/db_xref="CDD:235571"
misc_feature 63605..63823
/gene="sucB_1"
/locus_tag="CTDLC_0055"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(63695..63697,63716..63733,63743..63745)
/gene="sucB_1"
/locus_tag="CTDLC_0055"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 63725..63727
/gene="sucB_1"
/locus_tag="CTDLC_0055"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 64055..64657
/gene="sucB_1"
/locus_tag="CTDLC_0055"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:215782"
gene complement(64725..65483)
/gene="yfiH"
/locus_tag="CTDLC_0056"
/db_xref="GeneID:12388444"
CDS complement(64725..65483)
/gene="yfiH"
/locus_tag="CTDLC_0056"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005811987.1"
/db_xref="GI:385244143"
/db_xref="GeneID:12388444"
/translation="MERARIGSLMTLPSEALRKQTFPELEYLPIRHGIFPKQDGKEEA
SQVSDEVISSSLGGNDFCNARQVHGTSVRYVTPKTPKRAPADGLFTTTLLLSLHIYHA
DCQAAIFYDPENHVIANVHAGWRGLVGNIYAVTVRLLKKTFNTRPQDLIVAISPSLGP
DMAVYPDYKRLFPSSFFPLMPKENHLDFRAVARKQLLSEGLSSNHIFISERCTCSESN
TFFSFRSWKSRHQQDPSAIRSRKNNVTAVLLLPR"
misc_feature complement(64761..65429)
/gene="yfiH"
/locus_tag="CTDLC_0056"
/note="Multicopper polyphenol oxidase (laccase) [Secondary
metabolites biosynthesis, transport and catabolism];
Region: yfiH; COG1496"
/db_xref="CDD:31685"
misc_feature complement(64734..65414)
/gene="yfiH"
/locus_tag="CTDLC_0056"
/note="uncharacterized protein, YfiH family; Region:
TIGR00726"
/db_xref="CDD:162011"
gene complement(65465..67294)
/gene="gcpE"
/locus_tag="CTDLC_0057"
/db_xref="GeneID:12388445"
CDS complement(65465..67294)
/gene="gcpE"
/locus_tag="CTDLC_0057"
/EC_number="1.17.7.1"
/codon_start=1
/transl_table=11
/product="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase"
/protein_id="YP_005811988.1"
/db_xref="GI:385244144"
/db_xref="GeneID:12388445"
/translation="MFVGHLVMATPCIQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTT
TATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIH
FFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKC
KRLGKAMRIGVNHGSLSERVTQRYGNTIEGMVYSALEYAEVCVAMDYHDVIFSMKSSN
PKVMVAAYRSLAYELDQREWSYPLHLGVTEAGSGTAGIVKSAVGIGTLLSEGLGDTIR
CSLTGSPINEIPICIDLLKQTTELSERWGEADNPFAIHSSKQLGTRNTLNTPPWGNVY
GLLINLTDVQLLTAEPIELLQCLGIDTTTGKIDPTTPEGVVVPKAMRSSPIVSEIEKH
LLVFNKEDVPILNPMNEEEWLSEETLSAPFVYFEVTDIHTARRFFSLRQHSTQPVCLS
FSLDPHLSKNEAIIDLSARLGALLLDGLGSCVLLDFVDIKLSRTLGFLILQSANIRSV
TVEYVSCPGCGRTLFDLLAVSQRIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYV
GSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEPE"
misc_feature complement(65468..67276)
/gene="gcpE"
/locus_tag="CTDLC_0057"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
misc_feature complement(<66410..67234)
/gene="gcpE"
/locus_tag="CTDLC_0057"
/note="GcpE protein; Region: GcpE; pfam04551"
/db_xref="CDD:191025"
gene complement(67425..68528)
/locus_tag="CTDLC_0058"
/db_xref="GeneID:12388446"
CDS complement(67425..68528)
/locus_tag="CTDLC_0058"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005811989.1"
/db_xref="GI:385244145"
/db_xref="GeneID:12388446"
/translation="MFTSLSAIQNAIRPSCQLPVLTPRRALITSLASGIILGLAGCVV
GVLASFPALIAVSAVILGVSLFASGLFLCRYVCPPKIVSRRPSTELPAEPTPELPEIK
RPKPIAPPPPDFIPPRPLRRTIGEMLFGWNCIGSIRQMPFFLANDKTPLSFRNPSARF
RAWNIPSTHTIFVSTSGQFSSLRMQSNLPAAIANATQSAAFAKRGQGGLGVNDAFPAV
LTDKCWEESKPDSGILLPGECSSATWEDKNHLVPCWDEETKTYNKPLLFIQMLAPKAS
MYQDDSKSCYEITLRAYTACFEEAIRCGCRIIQIPLIAAFGDFVPRALSKQPKWIESA
KLSLLHAVEKTAKKHASKDLVIVLTNIPQPVNL"
misc_feature complement(67503..68018)
/locus_tag="CTDLC_0058"
/note="Macro domain, a high-affinity ADP-ribose binding
module found in a variety of proteins as a stand-alone
domain or in combination with other domains like in
histone macroH2A and some PARPs (poly ADP-ribose
polymerases). Some macro domains recognize poly...;
Region: Macro; cd02749"
/db_xref="CDD:239150"
misc_feature complement(order(67575..67583,67587..67589,67893..67898,
67902..67904,67938..67940,67995..67997))
/locus_tag="CTDLC_0058"
/note="ADP-ribose binding site [chemical binding]; other
site"
/db_xref="CDD:239150"
gene complement(68608..68883)
/gene="fer"
/locus_tag="CTDLC_0059"
/db_xref="GeneID:12388447"
CDS complement(68608..68883)
/gene="fer"
/locus_tag="CTDLC_0059"
/codon_start=1
/transl_table=11
/product="Ferredoxin"
/protein_id="YP_005811990.1"
/db_xref="GI:385244146"
/db_xref="GeneID:12388447"
/translation="MAKLIISADDENQEFHLEDGSSIAEVCEHSGVPLACTEGVCGTC
VIEVLEGADNLSDFSEAEYDFLGDPEDSNERLACQCCIKGGCVKITF"
misc_feature complement(68611..68883)
/gene="fer"
/locus_tag="CTDLC_0059"
/note="Ferredoxin [Energy production and conversion];
Region: Fdx; COG0633"
/db_xref="CDD:223706"
misc_feature complement(68623..68874)
/gene="fer"
/locus_tag="CTDLC_0059"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:238126"
misc_feature complement(order(68650..68655,68752..68763,68767..68769,
68776..68778,68785..68787))
/gene="fer"
/locus_tag="CTDLC_0059"
/note="catalytic loop [active]"
/db_xref="CDD:238126"
misc_feature complement(order(68650..68652,68752..68754,68761..68763,
68776..68778))
/gene="fer"
/locus_tag="CTDLC_0059"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:238126"
gene complement(68921..68995)
/locus_tag="CTDLC_r036"
/db_xref="GeneID:12388448"
tRNA complement(68921..68995)
/locus_tag="CTDLC_r036"
/product="tRNA-Pro"
/db_xref="GeneID:12388448"
gene 69065..70882
/gene="flhA"
/locus_tag="CTDLC_0060"
/db_xref="GeneID:12388449"
CDS 69065..70882
/gene="flhA"
/locus_tag="CTDLC_0060"
/note="protein FlhA"
/codon_start=1
/transl_table=11
/product="Flagellar biosynthesis protein"
/protein_id="YP_005811991.1"
/db_xref="GI:385244147"
/db_xref="GeneID:12388449"
/translation="MQNILRTSSCRYMFLLGIRSVWNRVAVVNNFRGSSWKIVAIPSC
ILFTLIFHLPRWLIDFGVCTNLACSLSIIFWVFSLRSSASARIFPSLLLYLCLLRLGL
NLASTRWILSSGWASPLIFALGNFFSLGSIPVALTVCLLLFLVNFLVITKGAERIAEV
RARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEESDYFSAMEGVFRFVKGDA
IMSWVLLGVNILAALFLGRATHVGDLWLTVLGDALVSQIPALLTSCAAATLIAKVGEK
ESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKALILGFSVLLFLGYKNPSSGET
LLFQKERVEFVLPDEGVGNPANLYKDARNQIYQELGVVFPEAIVVRHVTGSSPRLIFS
GQEVALRELSCPAILESIRQLAPETISERFVTRLVDEFREHAFLSIEEILPLKISENS
LIFLLRALVRERVSLHLFPKILEAIDVYGSQPKNSQELVECVRKYLGKQIGLSLWNRQ
DVLEVITIDSLVEQFVRDSQEKVVLDLNEKVVAQVKHLLRVGEGNFRAIVTGSETRKE
LKRIVDPYFPDLLVLAHSELPEEIPITLLGAVSDEVLLS"
misc_feature 69110..70867
/gene="flhA"
/locus_tag="CTDLC_0060"
/note="Flagellar biosynthesis pathway, component FlhA
[Cell motility and secretion / Intracellular trafficking
and secretion]; Region: FlhA; COG1298"
/db_xref="CDD:31489"
misc_feature 69143..70879
/gene="flhA"
/locus_tag="CTDLC_0060"
/note="type III secretion system protein; Validated;
Region: PRK05910"
/db_xref="CDD:168293"
gene 70990..71751
/gene="fliA"
/locus_tag="CTDLC_0061"
/db_xref="GeneID:12388450"
CDS 70990..71751
/gene="fliA"
/locus_tag="CTDLC_0061"
/note="protein FliA"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor flagellar operon"
/protein_id="YP_005811992.1"
/db_xref="GI:385244148"
/db_xref="GeneID:12388450"
/translation="MKTHDLADTWQLYWSTKEIHHRDVLIESYLPLVKNVAHRLASGM
PSHVKMEDLYALGVEGLIRAVERFDPEKSKRFESYALFIIKAAIIDGLRKQDWVPRSV
YQRANRLADAMDSLRQTLGKEPTDGELCEYLNISQQELSHWFSSSRPALVLSLHDDFS
CQDDDEGLALEERIADERAETGYDVIRKKEAISILTEALLALDEKERQVMALYYYDDL
VLKEIGKILGVSESRVSQIHSKALLKLRGTLSSLL"
misc_feature 70990..71712
/gene="fliA"
/locus_tag="CTDLC_0061"
/note="RNA polymerase sigma factor sigma-28; Reviewed;
Region: PRK05911"
/db_xref="CDD:235644"
misc_feature 71062..71280
/gene="fliA"
/locus_tag="CTDLC_0061"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature 71299..71532
/gene="fliA"
/locus_tag="CTDLC_0061"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature 71572..71712
/gene="fliA"
/locus_tag="CTDLC_0061"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(71596..71598,71626..71628,71644..71649,71677..71679,
71683..71688,71692..71700,71704..71709)
/gene="fliA"
/locus_tag="CTDLC_0061"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 71910..73148
/gene="tyrS"
/locus_tag="CTDLC_0062"
/db_xref="GeneID:12388451"
CDS 71910..73148
/gene="tyrS"
/locus_tag="CTDLC_0062"
/EC_number="6.1.1.1"
/codon_start=1
/transl_table=11
/product="tyrosyl-tRNA synthetase"
/protein_id="YP_005811993.1"
/db_xref="GI:385244149"
/db_xref="GeneID:12388451"
/translation="MQQLIDNLKKRGILDNSSAGLESLTVPVSAYLGFDPTAPSLHIG
HWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSLLDQAQVLDNSKKIAAAL
ASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEF
SYLLLQSYDFAHLFKEHNVVLQCGGSDQWGNITSGIDYIRRRGLGQAYGLTYPLLTDS
KGKKIGKTESGTIWLDPALTPPYELFQYFLRLPDQEISKVMRTLTLLDNEEIFALDER
LTSDPQAVKKYIAEVIVKDVHGSEGLAQAQAATESFFASKGKSITEAELVALVESGVG
VKVARADLIGKRWLDIVVELGFCSSRGQARRLIQQRGLYINQEPLADEQSILDGTQLC
FDRYVLLSQGKRKKQVIDLN"
misc_feature 71910..73124
/gene="tyrS"
/locus_tag="CTDLC_0062"
/note="tyrosyl-tRNA synthetase; Validated; Region:
PRK05912"
/db_xref="CDD:235645"
misc_feature 71991..72794
/gene="tyrS"
/locus_tag="CTDLC_0062"
/note="catalytic core domain of tyrosinyl-tRNA synthetase;
Region: TyrRS_core; cd00805"
/db_xref="CDD:173902"
misc_feature order(72000..72002,72006..72014,72033..72035,72039..72044,
72393..72395,72405..72407,72414..72416,72453..72455,
72459..72464,72471..72473,72549..72554,72573..72584)
/gene="tyrS"
/locus_tag="CTDLC_0062"
/note="active site"
/db_xref="CDD:173902"
misc_feature 72033..72044
/gene="tyrS"
/locus_tag="CTDLC_0062"
/note="HIGH motif; other site"
/db_xref="CDD:173902"
misc_feature order(72114..72116,72123..72128,72276..72281,72285..72293,
72300..72305,72309..72320,72324..72329,72381..72383,
72387..72392,72399..72404)
/gene="tyrS"
/locus_tag="CTDLC_0062"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173902"
misc_feature 72573..72587
/gene="tyrS"
/locus_tag="CTDLC_0062"
/note="KMSKS motif; other site"
/db_xref="CDD:173902"
misc_feature 72942..73145
/gene="tyrS"
/locus_tag="CTDLC_0062"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature order(72945..72947,72981..72986,72990..72995,72999..73004,
73011..73016,73020..73022,73041..73064,73068..73070)
/gene="tyrS"
/locus_tag="CTDLC_0062"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
gene 73158..74600
/gene="gnd"
/locus_tag="CTDLC_0063"
/db_xref="GeneID:12388452"
CDS 73158..74600
/gene="gnd"
/locus_tag="CTDLC_0063"
/EC_number="1.1.1.44"
/codon_start=1
/transl_table=11
/product="6-phosphogluconate dehydrogenase"
/protein_id="YP_005811994.1"
/db_xref="GI:385244150"
/db_xref="GeneID:12388452"
/translation="MAPNTDIGLIGLAVMGKNLVLNMVDHGFSVSVYNRSPAKTEEFL
KDHGESGALQGFTTIQEFVQSLKRPRKIMIMIKAGAPVDEMIASLLPFLEEGDILIDG
GNSYYLDSEQRYVDLKKEGILFVGMGVSGGEEGARKGPSIMPGGNIDAWPAIAPIFQS
IAAQVDGRPCCSWIGTGGAGHFVKAVHNGIEYGDIQLICETYEILKTRLNLSLEQIGN
IFFEWNQTDLNSYLIGAAAAVLIAKDENGNAIASTILDVAGQKGTGRWVAEDAIKAGV
PMSLIIESVLARYLSTWKEVRTKAAQEFPGIPLLCQPPQEASAFIEDVREALYAAKII
SYAQGFMLLKQVSQDKGWDLNLGELALIWRGGCIIQSAFLDKIHQGFENSPEAHSLIL
QDYFKKVLFDSETGFRRAVLHAIGSGVAIPCLSSALSFYDGYRTVDSSLFLVQGLRDY
FGAHGYERRDCPRGEFYHTDWLETKKTFRV"
misc_feature 73173..74576
/gene="gnd"
/locus_tag="CTDLC_0063"
/note="6-phosphogluconate dehydrogenase (decarboxylating);
Region: gnd; TIGR00873"
/db_xref="CDD:129951"
misc_feature 73173..74030
/gene="gnd"
/locus_tag="CTDLC_0063"
/note="6-phosphogluconate dehydrogenase-like protein;
Reviewed; Region: PRK09599"
/db_xref="CDD:236582"
misc_feature 73695..74570
/gene="gnd"
/locus_tag="CTDLC_0063"
/note="6-phosphogluconate dehydrogenase, C-terminal
domain; Region: 6PGD; pfam00393"
/db_xref="CDD:215895"
gene complement(74661..76469)
/gene="lepA"
/locus_tag="CTDLC_0064"
/db_xref="GeneID:12388453"
CDS complement(74661..76469)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="LepA protein"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_005811995.1"
/db_xref="GI:385244151"
/db_xref="GeneID:12388453"
/translation="MKPYKIENIRNFSIIAHIDHGKSTIADRLLESTSTIEQREMREQ
LLDSMDLERERGITIKAHPVTMTYEYEGETYELNLIDTPGHVDFSYEVSRSLAACEGA
LLIVDAAQGVQAQSLANVYLALERDLEIIPVLNKIDLPAAQPEAIKKQIEEFIGLDTS
NTIACSAKTGQGIPEILESIIRLVPPPKPPQETELKALIFDSHYDPYVGIMVYVRVIS
GEIKKGDRITFMATKGSSFEVLGIGAFLPEATLMEGSLRAGQVGYFIANLKKVKDVKI
GDTVTTVKHPAKEPLEGFKEIKPVVFAGIYPIDSSDFDTLKDALGRLQLNDSALTIEQ
ENSHSLGFGFRCGFLGLLHLEIIFERISREFDLDIIATAPSVIYKVVLKNGKTLFIDN
PTAYPDPALIEHMEEPWVHVNIITPQEYLSNIMSLCMDKRGICLKTDMLDQHRLVLSY
ELPLNEIVSDFNDKLKSVTKGYGSFDYRLGDYKKGAIIKLEILINDEAVDAFSCLVHR
DKAESKGRSICEKLVDVIPPQLFKIPIQAAINKKIIARETIRALAKNVTAKCYGGDIT
RKRKLWDKQKKGKKRMKEFGKVSIPNTAFVEVLKME"
misc_feature complement(74664..76457)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:235462"
misc_feature complement(75909..76442)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature complement(76401..76424)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature complement(order(76020..76022,76032..76034,76140..76145,
76212..76217,76281..76286,76377..76382,76389..76391,
76398..76403,76413..76415,76419..76421))
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature complement(order(75966..75974,76056..76058,76062..76067,
76398..76415))
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature complement(76284..76319)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature complement(76296..76298)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature complement(76218..76229)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature complement(76167..76223)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature complement(76056..76067)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature complement(75966..75974)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature complement(75627..75887)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:239670"
misc_feature complement(75018..75251)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:239680"
misc_feature complement(74667..74990)
/gene="lepA"
/locus_tag="CTDLC_0064"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene complement(76655..78241)
/locus_tag="CTDLC_0065"
/db_xref="GeneID:12388454"
CDS complement(76655..78241)
/locus_tag="CTDLC_0065"
/codon_start=1
/transl_table=11
/product="ADP,ATP carrier protein"
/protein_id="YP_005811996.1"
/db_xref="GI:385244152"
/db_xref="GeneID:12388454"
/translation="MTQTAEKPFGKLRSFLWPIHMHELKKVLPMFLMFFCISFNYTIL
RDTKDTLIVTAPGSGAEAIPFIKLWLVVPSAVVFMLIYAKLSNILNKQALFFAVLSPF
VVFFALFPVVIYPCRHILHPTAFADTLQSILPSGFMGFIAMLRNWTFAVFYVLSELWG
SVMLSLMFWGFANEITKISEAKRFYALFGVGANVALLISGPAIIWSSKLRASLGEGVD
PWGVSLYFLMAMFLCSCAIIAACYWWMNRYVLTDPRFYNPAELKAKKSKPKMSMGESF
SYLLRSPYMLLLALLVICYGICINLVEVTWKSQLKMQFPNPNDYSAFMGNFSFWTGVV
SVFVMLFIGGNVIRRFGWLTGALVTPIMVLVTGAVFFALVIFRDHATGLVAALGTTPL
MLAVVVGAIQNILSKSTKYALFDATKEMAYIPLDQEQKVKGKAAIDVVAARFGKSGGS
LIQQGLLVVCGSIGAMTPFLAVALFAIIMVWLTSATKLNKLFLAASAAKEQELAEAAA
AEKEASSAAKESAPAIEGVS"
misc_feature complement(76766..78187)
/locus_tag="CTDLC_0065"
/note="ADP/ATP carrier protein family; Region: AAA;
TIGR00769"
/db_xref="CDD:233122"
gene complement(78592..79137)
/locus_tag="CTDLC_0066"
/db_xref="GeneID:12388455"
CDS complement(78592..79137)
/locus_tag="CTDLC_0066"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005811997.1"
/db_xref="GI:385244153"
/db_xref="GeneID:12388455"
/translation="MTITINKAKTTICRTRLPTKELFMATAQITIQEEIEQLITKAIS
KVGGSKENDLCRYLPGPTGGYMHHFTLKKMKNSAPEQLLKMLKTFVIDSITPRSISPK
PRAPRGSKKRRDFVNFTKTDIERVLELARQVGDKDLLARFSPKKPLPSLKRELIRSIR
NNIVSTELWNAYVEALSQPTE"
gene 79726..80706
/gene="ytgA"
/locus_tag="CTDLC_0067"
/db_xref="GeneID:12388456"
CDS 79726..80706
/gene="ytgA"
/locus_tag="CTDLC_0067"
/codon_start=1
/transl_table=11
/product="Manganese-binding protein"
/protein_id="YP_005811998.1"
/db_xref="GI:385244154"
/db_xref="GeneID:12388456"
/translation="MSFFHTRKYKLILRGLLCLAGCFLMNSCSSSRGNQPADESIYVL
SMNRMICDCVSRITGDRVKNIVLIDGAIDPHSYEMVKGDEDRMAMSQLIFCNGLGLEH
SASLRKHLEGNPKVVDLGQRLLNKNCFDLLSEEGFPDPHIWTDMRVWGAAVKEMAAAL
IQQFPQYEEDFQKNADQILSEMEELDRWAARSLSTIPEKNRYLVTGHNAFSYFTRRYL
SSDAERVSGEWRSRCISPEGLSPEAQISIRDIMRVVEYISANDVEVVFLEDTLNQDAL
RKIVSCSKSGQKIRLAKSPLYSDNVCDNYFSTFQHNVRTITEELGGTVLE"
misc_feature 79744..80691
/gene="ytgA"
/locus_tag="CTDLC_0067"
/note="ABC-type metal ion transport system, periplasmic
component/surface adhesin [Inorganic ion transport and
metabolism]; Region: LraI; COG0803"
/db_xref="CDD:223874"
misc_feature 79846..80688
/gene="ytgA"
/locus_tag="CTDLC_0067"
/note="Helical backbone metal receptor (TroA-like domain).
These proteins have been shown to function in the ABC
transport of ferric siderophores and metal ions such as
Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site
is formed in the interface between...; Region: TroA-like;
cl00262"
/db_xref="CDD:241735"
misc_feature order(80038..80043,80050..80052,80197..80199)
/gene="ytgA"
/locus_tag="CTDLC_0067"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:238347"
gene 80624..81478
/gene="ytgB_1"
/locus_tag="CTDLC_0068"
/db_xref="GeneID:12388457"
CDS 80624..81478
/gene="ytgB_1"
/locus_tag="CTDLC_0068"
/codon_start=1
/transl_table=11
/product="Manganese transport system ATP-binding protein"
/protein_id="YP_005811999.1"
/db_xref="GI:385244155"
/db_xref="GeneID:12388457"
/translation="MSVITILARSSTMFAQLQKNWEGLFLNRDNAIAWSVEDLCVNYD
HSDVLCHITFSLPAGAMAAIIGPNGAGKSTLLKASLGLIRASSGQSLFFGQRFSKVHH
RIAYMPQRASVDWDFPMTVLDLVLMGCYGYKGIWNRISTDDRQEAMRILERVGLEAFA
NRQIGKLSGGQQQRAFLARSLMQKADLYLMDELFSAIDMASYQMVVDVLQELKSEGKT
IVVIHHDLSNVRKLFDHVILLNKHLVCSGSVEECLTKEAIFQAYGCELELLDYTLKLS
RGKYQGSC"
misc_feature 80711..81421
/gene="ytgB_1"
/locus_tag="CTDLC_0068"
/note="ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism]; Region: ZnuC;
COG1121"
/db_xref="CDD:31318"
misc_feature 80726..81364
/gene="ytgB_1"
/locus_tag="CTDLC_0068"
/note="ABC component of the metal-type transporters. This
family includes transporters involved in the uptake of
various metallic cations such as iron, manganese, and
zinc. The ATPases of this group of transporters are very
similar to members of...; Region: ABC_Metallic_Cations;
cd03235"
/db_xref="CDD:72994"
gene 81479..82834
/gene="ytgC"
/locus_tag="CTDLC_0069"
/db_xref="GeneID:12388458"
CDS 81479..82834
/gene="ytgC"
/locus_tag="CTDLC_0069"
/codon_start=1
/transl_table=11
/product="Manganese transport system membrane protein"
/protein_id="YP_005812000.1"
/db_xref="GI:385244156"
/db_xref="GeneID:12388458"
/translation="MLSCIFQDTIFLSSFLAVSLICMTTALWGTILLVERQPLLSESL
SHACYPGLLIGALLSYKVPAFSDSLWVIIFFGCLASVLGCLGISFLEKKLAMHKDSAL
CLVLVSFFGVGVILVSYVKDCCPLLYNKINAYLYGQAATLGYTEAKLALIIFCLSAVV
LWWWYRQISVAIFDREFAYSCGLRTRTAELVVLVFISLVIVSGVRSVGILLISAMFVA
PPLSARQLSDRLSTILILSSIFGGICGALGCYFSVAFTCQTVVEGKPISIILPTGPLV
VFFAGVLVFLCLIFSWKTGWITRYFRRKWFLFSRDEEHLLKIFWYLREQNTYQVGMRD
FVRSRKYQEYFGDKVFPRFRMFLLCKKGLVSCSEHQWSLTDKGLARAAKLVRAHRLWE
SYLVSQLDFNKNEVHHFAEEMEHVLTDELDSTLSQMLQDPDYDPHQREIPKRTRKSDG
C"
misc_feature 81479..82255
/gene="ytgC"
/locus_tag="CTDLC_0069"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:224033"
misc_feature 81509..82285
/gene="ytgC"
/locus_tag="CTDLC_0069"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(81563..81565,81575..81583,81962..81967,81971..81979,
81983..81988,81992..82009,82013..82021,82145..82147,
82166..82168)
/gene="ytgC"
/locus_tag="CTDLC_0069"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(81578..81580,81584..81586,81599..81601,81770..81772,
81776..81781,81788..81793,81800..81805,81812..81814,
81821..81826,81830..81832,81872..81877,81884..81886,
82112..82114,82268..82270,82277..82282)
/gene="ytgC"
/locus_tag="CTDLC_0069"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(81830..81832,81914..81916,82088..82090,82100..82102,
82235..82237,82259..82261)
/gene="ytgC"
/locus_tag="CTDLC_0069"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature 82343..82750
/gene="ytgC"
/locus_tag="CTDLC_0069"
/note="Mn-dependent transcriptional regulator
[Transcription]; Region: TroR; COG1321"
/db_xref="CDD:224240"
misc_feature 82598..82807
/gene="ytgC"
/locus_tag="CTDLC_0069"
/note="Iron dependent repressor, metal binding and
dimerisation domain; Region: Fe_dep_repr_C; pfam02742"
/db_xref="CDD:202369"
gene 82824..83780
/gene="ytgD"
/locus_tag="CTDLC_0070"
/db_xref="GeneID:12387546"
CDS 82824..83780
/gene="ytgD"
/locus_tag="CTDLC_0070"
/codon_start=1
/transl_table=11
/product="Manganese transport system membrane protein"
/protein_id="YP_005812001.1"
/db_xref="GI:385244157"
/db_xref="GeneID:12387546"
/translation="MVASISPYYGVSFLEFFLVFFSRLFSGKLFYDHLYIDDIQVIVF
FAIAVSCSVVGTFLVLKKMAMYANVVSHTILFGLVCVCLFTHQLIHLSMQALTIAAVS
TTLLTGASIHFIRNVFKVAEEASTALVFSLLFSASLLLLVFLTRNAHVGTELVIGNAD
ALAKTDILPIFLVLLINLGISYCFFSSFVCVSFDTIFAFSLGIRIRLVDYLIMLLLSA
SIVGAFKAVGVLMSLAFLLIPGLIAKLIASSVQEMMVYSMVFGGLAALIAPALSRSIL
SIYGIGLSTSGLAVGLLLVFYVVMLVFVCSKRAIMLRQKLDK"
misc_feature 82908..83663
/gene="ytgD"
/locus_tag="CTDLC_0070"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:224033"
misc_feature 82938..83657
/gene="ytgD"
/locus_tag="CTDLC_0070"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(82986..82988,82998..83006,83367..83372,83376..83384,
83388..83393,83397..83414,83418..83426,83550..83552,
83571..83573)
/gene="ytgD"
/locus_tag="CTDLC_0070"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(83001..83003,83007..83009,83022..83024,83187..83189,
83193..83198,83205..83210,83217..83222,83229..83231,
83238..83243,83247..83249,83280..83285,83520..83522)
/gene="ytgD"
/locus_tag="CTDLC_0070"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(83247..83249,83319..83321,83493..83495,83505..83507,
83640..83642)
/gene="ytgD"
/locus_tag="CTDLC_0070"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 83807..84946
/gene="yaeM"
/locus_tag="CTDLC_0071"
/db_xref="GeneID:12387547"
CDS 83807..84946
/gene="yaeM"
/locus_tag="CTDLC_0071"
/EC_number="1.1.1.267"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="YP_005812002.1"
/db_xref="GI:385244158"
/db_xref="GeneID:12387547"
/translation="MKHLALIGSTGSIGRQVLQVVRSIPDTFIIETLAAYGRNQEALI
SQIREFNPRVVAVREETTYKELRKLFPHIEILLGEEGLVSVATEPSVTMTIVASSGID
ALPAVIAAIRQKKTIALANKESLVAAGELVTTLARENGVQILPIDSEHNALFQCLEGR
DSSTIKKLLLTASGGPLRNKSKEELQKVSLQEVLRHPVWNMGPKITVDSSTLVNKGLE
IIEAFWLFGLEAVEIEAVIHPQSLVHGMVEFCDGTILSVMNPPSMLFPIQHVLTFPER
SPAIGPGFDFLSNRTLEFFPIDEDRFPSVHLAKRVLLEKGSMGCFFNGANEALVHRFL
AGEISWHQIVPKLQALVDQHRVQSCLSLEEILSVDAEARARAQEC"
misc_feature 83807..84943
/gene="yaeM"
/locus_tag="CTDLC_0071"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
[Lipid metabolism]; Region: Dxr; COG0743"
/db_xref="CDD:223814"
misc_feature 83816..84193
/gene="yaeM"
/locus_tag="CTDLC_0071"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:217176"
misc_feature 84233..84484
/gene="yaeM"
/locus_tag="CTDLC_0071"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature 84584..84934
/gene="yaeM"
/locus_tag="CTDLC_0071"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:222027"
gene 85142..87001
/gene="yaeL"
/locus_tag="CTDLC_0072"
/db_xref="GeneID:12387548"
CDS 85142..87001
/gene="yaeL"
/locus_tag="CTDLC_0072"
/codon_start=1
/transl_table=11
/product="Membrane endopeptidase, M50 family"
/protein_id="YP_005812003.1"
/db_xref="GI:385244159"
/db_xref="GeneID:12387548"
/translation="MTIIYFVLAALALGFLILIHELGHLLAAKAVGMSVESFSIGFGP
ALVRKKMGSVEYRIGAIPFGGYVRIKGMDRNDKDNSGDKEKTVYDIPEGFFSKSPWKR
IFVLAAGPLANLLVAIFVFGILYFSGGRTKSFSEYTSIVGWVHPSLEQQGLHAGDQIF
FCNGQPYSGHKMAFSSSLLERKLSLQGQHPAYFSESEAFSLEAPFNPNMEGVPCLGAS
YLLYRGSDPLPEKSPLVDAGLSEGDRLVWMDGLLVFSGAQVSQMLNEKQSFLRVERQG
KVVFVRQARVLAGDLTLTPYFKNELIDCQYEAGLKGKWASLYTLPYIINGDGFVESKV
KLLNDERVSLDYNLELGDKIVAVDGIPVMSNADILRLVQDHRVSLIFQRMSPEQLTVL
EQKAADQAFINSYDMDDLLRVAESVGEEREVSRLGDYRLVTRVQPRPWAHIYSEALLD
KQRALASKFRDEQERRYYLERIEAEKQRISLGIPLKDLAVQYNPDPWVLMEESVSDSL
KTVKALGMGRVSPQWLSGPVGIVRILHTGWSVGIPEALAWIGLISVNLAVLNLLPIPV
LDGGYILLCLWEILSRRRLNMRLVEKALVPFMILLVLFFVFLTLQDLSRVFVG"
misc_feature 85145..>86038
/gene="yaeL"
/locus_tag="CTDLC_0072"
/note="RIP metalloprotease RseP; Region: TIGR00054"
/db_xref="CDD:232801"
misc_feature 85148..>85519
/gene="yaeL"
/locus_tag="CTDLC_0072"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature order(85199..85204,85211..85213)
/gene="yaeL"
/locus_tag="CTDLC_0072"
/note="active site"
/db_xref="CDD:100084"
misc_feature <86651..86920
/gene="yaeL"
/locus_tag="CTDLC_0072"
/note="Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane];
Region: COG0750"
/db_xref="CDD:223821"
misc_feature <86777..86914
/gene="yaeL"
/locus_tag="CTDLC_0072"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:245232"
misc_feature 86819..86830
/gene="yaeL"
/locus_tag="CTDLC_0072"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene complement(88083..89180)
/gene="recF"
/locus_tag="CTDLC_0074"
/db_xref="GeneID:12387549"
CDS complement(88083..89180)
/gene="recF"
/locus_tag="CTDLC_0074"
/note="protein RecF"
/codon_start=1
/transl_table=11
/product="DNA replication and repair protein"
/protein_id="YP_005812004.1"
/db_xref="GI:385244160"
/db_xref="GeneID:12387549"
/translation="MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALY
ILSLGRSFRTSRLTDAIRFGASHFFIEAVFSHKEVFHTLSIQVDKKGKKILFDGAPIT
KLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQR
NASIKAQNQKAISAWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYE
SSLITEESPTLNDIASNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVAKFSS
EGQKHSLLAVLRFAECVYLQEEFCIHPLLCMDDIHACLDQQRLDQLLQLSNSLGQVVT
TSTICPDHRSTTSCIFHVTQAQVSLVAPQSL"
misc_feature complement(88089..89180)
/gene="recF"
/locus_tag="CTDLC_0074"
/note="recF protein; Region: recf; TIGR00611"
/db_xref="CDD:233051"
misc_feature complement(<88686..89174)
/gene="recF"
/locus_tag="CTDLC_0074"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(89070..89093)
/gene="recF"
/locus_tag="CTDLC_0074"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(88827..88829,89067..89075,89079..89084))
/gene="recF"
/locus_tag="CTDLC_0074"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature complement(88827..88838)
/gene="recF"
/locus_tag="CTDLC_0074"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature complement(88245..>88421)
/gene="recF"
/locus_tag="CTDLC_0074"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(88329..88358)
/gene="recF"
/locus_tag="CTDLC_0074"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(88254..88271)
/gene="recF"
/locus_tag="CTDLC_0074"
/note="Walker B; other site"
/db_xref="CDD:213179"
gene complement(89180..90466)
/gene="dnaN"
/locus_tag="CTDLC_0075"
/db_xref="GeneID:12387550"
CDS complement(89180..90466)
/gene="dnaN"
/locus_tag="CTDLC_0075"
/EC_number="2.7.7.7"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_005812005.1"
/db_xref="GI:385244161"
/db_xref="GeneID:12387550"
/translation="MSLIIILISKYHVNFRLHGAFSNPSFVKIFFTKASPERRLTCFH
VTKHGYSFQTDLHDYRKIMKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCND
ELVFTATDLTVSTRCVVKAKVYESGSVTIPSRRFFQLIRELTEANIEVAAHSGEMATI
TSGSSCFRLLSMGKEDFPMLPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTG
VLLSIANGTMTVVGTDGKRLAKIDTEISLDPSFSGDYIIPIKAVEEIIRMSSEDVQST
IFLDQTKIAVECGNTLLVTKLLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALF
TNESSHSVKFSFSPGELTLTANCTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKHS
RDELVQLGISDSYNPGIITDSTRSLFVIMPMRLHDD"
misc_feature complement(89192..90280)
/gene="dnaN"
/locus_tag="CTDLC_0075"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature complement(89195..90280)
/gene="dnaN"
/locus_tag="CTDLC_0075"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature complement(order(89687..89689,90044..90046,90065..90067,
90209..90211))
/gene="dnaN"
/locus_tag="CTDLC_0075"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature complement(order(89372..89377,89468..89470,89969..89971,
89975..89977,90053..90055,90062..90064))
/gene="dnaN"
/locus_tag="CTDLC_0075"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature complement(order(89195..89206,89324..89326,89753..89764,
89768..89770))
/gene="dnaN"
/locus_tag="CTDLC_0075"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature complement(order(89195..89206,89315..89317,89396..89401,
89438..89440,89543..89545,89759..89764,89768..89770))
/gene="dnaN"
/locus_tag="CTDLC_0075"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 90560..91015
/gene="smpB"
/locus_tag="CTDLC_0076"
/db_xref="GeneID:12387551"
CDS 90560..91015
/gene="smpB"
/locus_tag="CTDLC_0076"
/codon_start=1
/transl_table=11
/product="SsrA-binding protein"
/protein_id="YP_005812006.1"
/db_xref="GI:385244162"
/db_xref="GeneID:12387551"
/translation="MGVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLG
DAYVTISKGEAWLLQSSIALYRFGNINNHEERRKRKLLLHKYEIHKLDARISQKGLTV
VPLSFFFSKGFVKVRIGCCRGKKAHDKRQSIIEREKNRELAAAMKRSYR"
misc_feature 90584..90931
/gene="smpB"
/locus_tag="CTDLC_0076"
/note="Small protein B (SmpB) is a component of the
trans-translation system in prokaryotes for releasing
stalled ribosome from damaged messenger RNAs; Region:
SmpB; cd09294"
/db_xref="CDD:187755"
misc_feature order(90626..90643,90647..90652,90656..90661,90668..90670,
90719..90721,90803..90820,90902..90904)
/gene="smpB"
/locus_tag="CTDLC_0076"
/note="SmpB-tmRNA interface; other site"
/db_xref="CDD:187755"
gene complement(90993..91943)
/gene="apbE"
/locus_tag="CTDLC_0077"
/db_xref="GeneID:12387552"
CDS complement(90993..91943)
/gene="apbE"
/locus_tag="CTDLC_0077"
/note="Iron-sulfur cluster assembly/repair protein"
/codon_start=1
/transl_table=11
/product="ApbE protein"
/protein_id="YP_005812007.1"
/db_xref="GI:385244163"
/db_xref="GeneID:12387552"
/translation="MGKFFASYLLILAPFFLQSCSAPSRTTLEGVRMTIPYRIVFGEA
LSPDAFQQAQKEIDRVFDHIDQTFNNWNPLSEISRINRTTKQTPIPLSPALFAFLCEI
DHFHAFSDGRFDPTLGALKSLWLLHLKSHTIPSQELQHLYKHSSGWHLISLDKTQQTL
RKLSPLVQLDLCGTVKGFAVDLLGTACAQFCQNYYVEWGGEIKTKGKHPSGRSWAVAS
SATPEILHLHDHAIATSGSQYQRWHVDNKTYTHILDPLTGTPLEDSSHPILAVSVINE
SCAFADAMATALTTFSSKQEALDWANKKHLCAYITDKNVS"
misc_feature complement(91002..91937)
/gene="apbE"
/locus_tag="CTDLC_0077"
/note="Membrane-associated lipoprotein involved in
thiamine biosynthesis [Coenzyme metabolism]; Region: ApbE;
COG1477"
/db_xref="CDD:31666"
gene complement(91913..92782)
/gene="folD"
/locus_tag="CTDLC_0078"
/db_xref="GeneID:12387553"
CDS complement(91913..92782)
/gene="folD"
/locus_tag="CTDLC_0078"
/EC_number="1.5.1.5"
/EC_number="3.5.4.9"
/note="methylenetetrahydrofolate dehydrogenase"
/codon_start=1
/transl_table=11
/product="Methenyltetrahydrofolate cyclohydrolase"
/protein_id="YP_005812008.1"
/db_xref="GI:385244164"
/db_xref="GeneID:12387553"
/translation="MCMLLKGAPAADHILATIKENIRACSKAPGLAVVLIGNNPASEI
YVNMKIKRATDLGMVSKSYRKPSDATLSDILALIHQLNNDENIHGILVQLPLPKHLDA
QAILSTITPDKDVDGLHPVNVGKLLLGETDGFIPCTPAGIVELCKYYEIPLHGKHVVI
LGRSNIVGKPLAALLMQRHADTNASVTLLHSQSEHLTEITRTADILISAIGVPLFVNK
EMIAEKTVIMDVGTSRIPAANPKGYILVGDVDFNNVVPVCRAITPVPGGVGPMTVAML
MRNTWESFLRHTS"
misc_feature complement(91916..92776)
/gene="folD"
/locus_tag="CTDLC_0078"
/note="bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional; Region: PRK14181"
/db_xref="CDD:172669"
misc_feature complement(92435..92776)
/gene="folD"
/locus_tag="CTDLC_0078"
/note="Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain; Region: THF_DHG_CYH; pfam00763"
/db_xref="CDD:201431"
misc_feature complement(91931..92452)
/gene="folD"
/locus_tag="CTDLC_0078"
/note="NADP binding domain of methylene-tetrahydrofolate
dehydrogenase/cyclohydrolase; Region:
NAD_bind_m-THF_DH_Cyclohyd; cd01080"
/db_xref="CDD:133448"
misc_feature complement(order(92177..92179,92204..92209,92213..92215,
92219..92236,92255..92257,92264..92269,92294..92296,
92312..92314,92318..92320,92411..92413,92420..92425))
/gene="folD"
/locus_tag="CTDLC_0078"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:133448"
misc_feature complement(order(91967..91969,91976..91978,92087..92089,
92093..92095,92138..92140,92147..92149,92153..92155,
92210..92215,92291..92296,92369..92371))
/gene="folD"
/locus_tag="CTDLC_0078"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:133448"
misc_feature complement(order(91964..91966,91985..91990))
/gene="folD"
/locus_tag="CTDLC_0078"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133448"
gene complement(92894..93337)
/locus_tag="CTDLC_0079"
/db_xref="GeneID:12387554"
CDS complement(92894..93337)
/locus_tag="CTDLC_0079"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812009.1"
/db_xref="GI:385244165"
/db_xref="GeneID:12387554"
/translation="MVSFLLFPRYFPEWRPVYFAPLIVTTFYSQPKERVLLWAMLSGL
LCDIGSTCFMGIQAFLYVSTSLILYKTQRFFIKERWISFPLISALFSLTFYFLSYPVL
AFFNRPLCLYNTALLADLQHVLMVDLPYGALLSLLAHKKSFTPQI"
gene 93614..93907
/gene="ltuB"
/locus_tag="CTDLC_0080"
/db_xref="GeneID:12387555"
CDS 93614..93907
/gene="ltuB"
/locus_tag="CTDLC_0080"
/codon_start=1
/transl_table=11
/product="Late transcription unit B protein"
/protein_id="YP_005812010.1"
/db_xref="GI:385244166"
/db_xref="GeneID:12387555"
/translation="MKKRSSRKLAQVIGRKTGNYFPASIEGETKKEHKHHYSTASKEK
ESLRKRAKEFDVLVHSLLDKHVPQNSDQVLIFTYQNGFVETDFHNFGRYSVKL"
gene 93940..94260
/locus_tag="CTDLC_0081"
/db_xref="GeneID:12387556"
CDS 93940..94260
/locus_tag="CTDLC_0081"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812011.1"
/db_xref="GI:385244167"
/db_xref="GeneID:12387556"
/translation="MGLTQNGKMGSLGVYIGLKDRPVIKISKIFITERLGMSACLGLQ
RCTLLHLPAFLFRLTYFLVFFARPRALRFFCPNVFIPIFCFNFIIHCFSLKLLLPIHW
FFVF"
gene 94270..95952
/locus_tag="CTDLC_0082"
/db_xref="GeneID:12387557"
CDS 94270..95952
/locus_tag="CTDLC_0082"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812012.1"
/db_xref="GI:385244168"
/db_xref="GeneID:12387557"
/translation="MSISGSGNVSPATPDFDPSILMGRQAASAHAAKEASGASKATET
SAAEQQALISSGTELDYVTDLQQSEGKYKKTLDKTSKSPKTKLKGNFSKVRAGTKGFL
TGFGTRASRISARKAENNGEGMSMIPSQMEYVKKKGNRVSPEMQNFYLGASGLWSPTS
DVSSITENCLGATALSTTPLLTTMQDPVSIEHLSSGEITALASFNPNVRTASLNEQTI
NAWTEARLGGEMVSTLLDPNIETSSLLRRAPTVSNEGMVDVSDMGNQTTSLSMEGLVN
TVVDDPASAEEEKKTGELSLEEMAAMAKMMAALLSSGQGMAVFIASSTPSSGLTQFPE
PKFSGTIPHHFSKKEDNETIWGLDSQIGSIAFDTRRENNASPLPTTSLHEEASYRFPV
GEAPLDVNEIPFAVQHSTVFSKETANTEQALIQNESLGEIPVSAEVVGQDTVSSAYQF
PSHLGMAVLASVPLSTEDYKTAVEHRKGPGGPPDPLIYQYRNVAVDPAIIFQSPSPFS
VSSRFSVQGKPEAVAVYNDDQEEAAGGNRDSDEGKDQEQDKTRETEDAGGDS"
gene 95949..96431
/locus_tag="CTDLC_0083"
/db_xref="GeneID:12387558"
CDS 95949..96431
/locus_tag="CTDLC_0083"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812013.1"
/db_xref="GI:385244169"
/db_xref="GeneID:12387558"
/translation="MRIIPFDPYGSMAFQAIAKDPQERKNGSISEKISEEIARNEALR
MALLAIADQEDKEKKQKHRFKILTKKQTRILLGQLRHFRLDFQKLQAGVVIEWSWDDK
SERSKSLGSRITRKSKKTICISAAAAQAIAHAAEAWVIARNEGILEMTLSLFQHKDNE
"
gene complement(96445..97530)
/locus_tag="CTDLC_0084"
/db_xref="GeneID:12387559"
CDS complement(96445..97530)
/locus_tag="CTDLC_0084"
/codon_start=1
/transl_table=11
/product="Phosphatidylcholine-hydrolyzing phospholipase D
(PLD) family"
/protein_id="YP_005812014.1"
/db_xref="GI:385244170"
/db_xref="GeneID:12387559"
/translation="MKKTKHLISKIMFSLVSLFVGGFLLKAPAPTQSADTFQTLIESK
EPVIFTKQCGDNVTQILCDAIDSAKKDIFLSIYDLSAPAITTSLKKQVSARIPVCIHY
QRISKNAEFSQSPYLTLGEHPPMHRKLMHQKTMAIDGELAWIGSANFTLASLEKSANL
IIGLKSAEICHFIKTQTSGRCFINNQLIEYFSFDGGSSAALETVLHHIRSAKESIQVG
MFALTLPQIIAELNAAQNCGVDVVILVDKGYKSFTVQQIKQLEHPSLSIYEKVTPYQL
HHKFGIFDKKTLITGSVNWSENGFLINTEDMIVIENLTEKQQSKIQAIWEGLVRECAL
YYSPDQEEKEKDPLIIPFPPSEKKQAA"
misc_feature complement(97045..97371)
/locus_tag="CTDLC_0084"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
misc_feature complement(96949..97350)
/locus_tag="CTDLC_0084"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(97054..97056,97087..97089,97093..97095,
97132..97134,97138..97140))
/locus_tag="CTDLC_0084"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature complement(97138..97140)
/locus_tag="CTDLC_0084"
/note="catalytic site [active]"
/db_xref="CDD:197200"
misc_feature complement(96547..96960)
/locus_tag="CTDLC_0084"
/note="Catalytic domain of EDTA-resistant nuclease Nuc,
vertebrate phospholipase D6, and similar proteins; Region:
PLDc_Nuc_like; cd09116"
/db_xref="CDD:197215"
misc_feature complement(96556..96921)
/locus_tag="CTDLC_0084"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(96616..96618,96649..96651,96655..96657,
96694..96696,96700..96702))
/locus_tag="CTDLC_0084"
/note="putative active site [active]"
/db_xref="CDD:197215"
misc_feature complement(96700..96702)
/locus_tag="CTDLC_0084"
/note="catalytic site [active]"
/db_xref="CDD:197215"
gene complement(97700..99439)
/gene="yigC"
/locus_tag="CTDLC_0085"
/db_xref="GeneID:12387560"
CDS complement(97700..99439)
/gene="yigC"
/locus_tag="CTDLC_0085"
/codon_start=1
/transl_table=11
/product="Putative quinone decarboxylase"
/protein_id="YP_005812015.1"
/db_xref="GI:385244171"
/db_xref="GeneID:12387560"
/translation="MFSLRSLVDYLRSQHELIDIHVPVDPHLEIAEIHRRVVEREGPA
LLFHQVKGSPFPVLTNLFGTRRRVDLLFPDLSSDLFEQIIHLLSSPPSFSSLWKHRSL
FKRGISALGMRKRHLRPSPFLYQDAPNLSQLPMLTSWPEDGGPFLTLPLVYTQSPENG
VPNLGMYRMQRFDKETLGLHFQIQKGGGAHFFEAEQKKQNLPVTVFLSGNPFLILSAI
APLPENVPELLFCSFLQNKKLSFVEKHPQSGHPLLCDSEFILTGEAVAGERRPEGPFG
DHFGYYSLTHDFPIFKCNCLYHKKDAIYPATVVGKPFQEDFFLGNKLQELLSPLFPLI
MPGVQDLKSYGEAGFHALAAAIVKERYWKEALRSALRILGEGQLSLTKFLWITDQSVD
LENFPSLLECVLERMNFDRDLLILSETANDTLDYTGSGFNKGSKGIFLGVGAPIRSLP
RRYRGPSLPGISQIGVFCRGCLVLETSLQQLDIPALLKEPHLADWPLVILVEDLSSAL
SSTKEFIWRTFTRSSPATDLHIPVSQITNHKVSYTPPMILNALMKPPYPKEVEADEAT
QNLVSSRWHSYFP"
misc_feature complement(98132..99424)
/gene="yigC"
/locus_tag="CTDLC_0085"
/note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
Region: UbiD; cl00311"
/db_xref="CDD:241772"
misc_feature complement(97703..>97906)
/gene="yigC"
/locus_tag="CTDLC_0085"
/note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
Region: UbiD; cl00311"
/db_xref="CDD:241772"
gene complement(99565..99885)
/gene="rpmB"
/locus_tag="CTDLC_0086"
/db_xref="GeneID:12387561"
CDS complement(99565..99885)
/gene="rpmB"
/locus_tag="CTDLC_0086"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="YP_005812016.1"
/db_xref="GI:385244172"
/db_xref="GeneID:12387561"
/translation="MLQLPCREIAASEYRKVMSKKCALTGRKPRRGYSYAIRGISKKK
KGIGLKVTGRTKRRFFPNMMTKRLWSTEENRFLKLKISAAALRLVDKLGLDQVVARAK
SKGF"
misc_feature complement(99568..99834)
/gene="rpmB"
/locus_tag="CTDLC_0086"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:178987"
gene complement(99983..101566)
/gene="malQ"
/locus_tag="CTDLC_0087"
/db_xref="GeneID:12387562"
CDS complement(99983..101566)
/gene="malQ"
/locus_tag="CTDLC_0087"
/EC_number="2.4.1.25"
/codon_start=1
/transl_table=11
/product="4-alpha-glucanotransferase"
/protein_id="YP_005812017.1"
/db_xref="GI:385244173"
/db_xref="GeneID:12387562"
/translation="MPSLSQSRRIIQQSSIRKIWNQIDTSPKHGVCVPLFSLYTQESC
GIGEFLDLIPMIDWCISCGFQILQILPINDTGSCSSPYNSISSIALNPLHLSISALPY
KEEVPAAETRIREMQQLSQLPQVHYEKVRSMKRDFFQEYYRVCKQKKLTDHPDFYAFC
EQEKYWLHPYALFRSIREHLDNLPINHWPTTYTDLSQITEHERTFAEDIQFHSYLQYL
CFQQMTQVREHANCKSCLIKGDIPILISKDSCDVWFYRHYFSSSESVGAPPDLYNAEG
QNWHLPICNMKTLQQDNYLWWKERLRYAENFYSLYRLDHVVGLFRFWVWDESGCGRFE
PHDPKNYLAQGQDILSHLLTSSSMLPIGEDLGTIPSDVKRMLESFAVCGTRIPRWERN
WEGNGAYTPFDQYDPLSVTSLSTHDSSTLASWWKESPQESKLFAQFLGLPYSSTLSLH
NHTEILKLSHKTSSIFRINLINDYLALFPDLISKTPRYERINLPGTISKNNWVYRVKP
SIEDLSSHSKLNSLLEALF"
misc_feature complement(99986..101470)
/gene="malQ"
/locus_tag="CTDLC_0087"
/note="4-alpha-glucanotransferase; Region: Glyco_hydro_77;
pfam02446"
/db_xref="CDD:202242"
gene complement(101570..102010)
/gene="sycE"
/locus_tag="CTDLC_0088"
/db_xref="GeneID:12387563"
CDS complement(101570..102010)
/gene="sycE"
/locus_tag="CTDLC_0088"
/codon_start=1
/transl_table=11
/product="Type III secretion chaperone"
/protein_id="YP_005812018.1"
/db_xref="GI:385244174"
/db_xref="GeneID:12387563"
/translation="MQNQFEQLLTELGTQINSPLTPDSNNACIVRFGYNNVAVQIEED
GNSGFLVAGVMLGKLPENTFRQKIFKAALSINGSPQSNIKGTLGYGEISNQLYLCDRL
NMTYLNGEKLARYLVLFSQHANIWMQSISKGALPDLHALGMYHL"
misc_feature complement(101630..101992)
/gene="sycE"
/locus_tag="CTDLC_0088"
/note="Tir chaperone protein (CesT) family; Region: CesT;
pfam05932"
/db_xref="CDD:218814"
gene complement(102048..103313)
/gene="sctW"
/locus_tag="CTDLC_0089"
/db_xref="GeneID:12387564"
CDS complement(102048..103313)
/gene="sctW"
/locus_tag="CTDLC_0089"
/codon_start=1
/transl_table=11
/product="type III secreted protein SctW"
/protein_id="YP_005812019.1"
/db_xref="GI:385244175"
/db_xref="GeneID:12387564"
/translation="MTASGGAGGLGSTQTVDVARAQAAAATQDAQEVIGSQEASEASM
LKGCEDLINPAAATRIKKKGEKFESLEARRKPTADKAEKKSESTEEKGDTPLEDRFTE
DLSEVSGEDFRGLKNSFDDDSSPDEILDALTSKFSDPTIKDLALDYLIQTAPSDGKLK
STLIQAKHQLMSQNPQAIVGGRNVLLASETFASRANTSPSSLRSLYFQVTSSPSNCAN
LHQMLASYLPSEKTAVMEFLVNGMVADLKSEGPSIPPAKLQVYMTELSNLQALHSVNS
FFDRNIGNLENSLKHEGHAPIPSLTTGNLTKTFLQLVEDKFPSSSKAQKALNELVGPD
TGPQTEVLNLFFRALNGCSPRIFSGAEKKQQLASVITNTLDAINADNEDYPKPGDFPR
SSFSSTPPHAPVPQSEIPTSPTSTQPPSP"
misc_feature complement(102474..103205)
/gene="sctW"
/locus_tag="CTDLC_0089"
/note="HrpJ-like domain; Region: HrpJ; cl15454"
/db_xref="CDD:246967"
gene complement(103331..105457)
/gene="sctV"
/locus_tag="CTDLC_0090"
/db_xref="GeneID:12387565"
CDS complement(103331..105457)
/gene="sctV"
/locus_tag="CTDLC_0090"
/codon_start=1
/transl_table=11
/product="type III secretion inner membrane protein SctV"
/protein_id="YP_005812020.1"
/db_xref="GI:385244176"
/db_xref="GeneID:12387565"
/translation="MNKLLNFVSRTFGGDAALNMINKSSDLILAMWMLGVVLMIILPL
PPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQIL
LHAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM
PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLI
NIVGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSSDKD
TNLGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKN
SPGKKGGASSTTTVGAADGAAASGENSDDYALTLPVILELGKDLSKLIQQRTKSGQSF
VDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKIPPNHVLT
NEVEENLSRYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFF
HRNSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLR
TILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGA
IKQTSAGSYLALDPDSVNLILKSMRMTITPTPPGGQPPVLLTAIDVRRYVRKLIETEF
PDIAVISYQEVLPEIRIQPLGRIQIF"
misc_feature complement(103334..105406)
/gene="sctV"
/locus_tag="CTDLC_0090"
/note="Type III secretory pathway, component EscV
[Intracellular trafficking and secretion]; Region: EscV;
COG4789"
/db_xref="CDD:227127"
misc_feature complement(103361..105355)
/gene="sctV"
/locus_tag="CTDLC_0090"
/note="FHIPEP family; Region: FHIPEP; pfam00771"
/db_xref="CDD:216110"
gene complement(105457..106539)
/gene="sctU"
/locus_tag="CTDLC_0091"
/db_xref="GeneID:12387566"
CDS complement(105457..106539)
/gene="sctU"
/locus_tag="CTDLC_0091"
/note="Type III secretion inner membrane protein"
/codon_start=1
/transl_table=11
/product="SctU"
/protein_id="YP_005812021.1"
/db_xref="GI:385244177"
/db_xref="GeneID:12387566"
/translation="MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSL
ASFFAKHLGSFLVSIFKTAPQNHDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIG
FLIVGPTFSTEVFKPDLKKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKN
RVELVIETAGIPPLVTAQVFKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEK
FEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPE
KYKAPWIIAMGVNLRAKRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAV
GEILLYITSLNAQNLENKNINQFDNL"
misc_feature complement(105472..106539)
/gene="sctU"
/locus_tag="CTDLC_0091"
/note="type III secretion system protein; Validated;
Region: PRK06298"
/db_xref="CDD:180519"
misc_feature complement(105508..105738)
/gene="sctU"
/locus_tag="CTDLC_0091"
/note="Uncharacterized homolog of the cytoplasmic domain
of flagellar protein FhlB [Function unknown]; Region:
COG2257; cl15822"
/db_xref="CDD:247086"
gene 106796..107896
/gene="ychF"
/locus_tag="CTDLC_0092"
/db_xref="GeneID:12387567"
CDS 106796..107896
/gene="ychF"
/locus_tag="CTDLC_0092"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_005812022.1"
/db_xref="GI:385244178"
/db_xref="GeneID:12387567"
/translation="MKMGQTECGIVGLPNVGKSGLFNALTGAQVASCNYPFCTIDPNV
GIVPVIDPRLETLARISQSQKIIYADMKFVDIAGLVKGAASGAGLGNRFLSHIRETHA
IAHVVRCFDNDDITHVSGKIDPEEDIAVINLELVLADFSSATSVREKLGKQAKGKKDI
GQLLPLLDRVVDHLESGNPVRTLSLSLEEKVLLKPYPFLTGKPMLYIANIDEDSLTDL
DNPYVQKVREIAKREEANVVPICVKLEEEILSLPLEERQDFLHSLGLQESGLNRLVAS
AYHTLGLISYFTTGPQETRAWTISKGATAAEAAGEIHSDIQRGFIRAEVVTMEDIVAY
DGRAGAREAGKLRAEGRDYIVQDGDIMLFLHN"
misc_feature 106796..107893
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="GTP-binding protein YchF; Reviewed; Region:
PRK09601"
/db_xref="CDD:236583"
misc_feature 106817..107638
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="YchF GTPase; Region: YchF; cd01900"
/db_xref="CDD:206687"
misc_feature 106829..106852
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="G1 box; other site"
/db_xref="CDD:206687"
misc_feature order(106838..106840,106844..106855,107420..107425,
107429..107431,107516..107524)
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206687"
misc_feature 106898..106921
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="Switch I region; other site"
/db_xref="CDD:206687"
misc_feature 106910..106912
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="G2 box; other site"
/db_xref="CDD:206687"
misc_feature order(107015..107044,107063..107092)
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="Switch II region; other site"
/db_xref="CDD:206687"
misc_feature 107018..107029
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="G3 box; other site"
/db_xref="CDD:206687"
misc_feature 107420..107431
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="G4 box; other site"
/db_xref="CDD:206687"
misc_feature 107516..107524
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="G5 box; other site"
/db_xref="CDD:206687"
misc_feature 107642..107890
/gene="ychF"
/locus_tag="CTDLC_0092"
/note="TGS_YchF_C: This subfamily represents TGS
domain-containing YchF GTP-binding protein, a universally
conserved GTPase whose function is unknown. The N-terminal
domain of the YchF protein belongs to the Obg-like family
of GTPases, and some members of the...; Region:
TGS_YchF_C; cd04867"
/db_xref="CDD:133440"
gene complement(107905..108828)
/gene="ribF"
/locus_tag="CTDLC_0093"
/db_xref="GeneID:12387568"
CDS complement(107905..108828)
/gene="ribF"
/locus_tag="CTDLC_0093"
/EC_number="2.7.1.26"
/EC_number="2.7.7.2"
/note="Riboflavin kinase"
/codon_start=1
/transl_table=11
/product="FMN adenylyltransferase"
/protein_id="YP_005812023.1"
/db_xref="GI:385244179"
/db_xref="GeneID:12387568"
/translation="MYLLIYVMQMDLFYSLLPSSNPVESVTIGFFDGCHLGHQALLSF
LTKFPSKSGVITFSQHPEHTLSNSPPETITSLEERVQLLAGCGIDYLAVLPFNQEIAN
QEAEPFIQSIYKTLRPSRIVLGYDSRLGKGGLGTAQTLRPFAASLGISLEEVPPLQIE
GTIVSSRKIRQFLRKKDLCSAEKFLGRPFSYTGKVAHGRGIGASFGYATINLPLTHSL
LPLGVYTCTIVIEGFSYAGVMNLGMAPTMQRHQLCLEAHILDFSEDLYDKSITVIPEQ
FLREEKLFSSKDELVLAIQEDIRQARLNKNR"
misc_feature complement(107923..108798)
/gene="ribF"
/locus_tag="CTDLC_0093"
/note="bifunctional riboflavin kinase/FMN
adenylyltransferase; Reviewed; Region: PRK05627"
/db_xref="CDD:235536"
misc_feature complement(108235..108756)
/gene="ribF"
/locus_tag="CTDLC_0093"
/note="FAD synthetase, N-terminal domain of the
bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
/db_xref="CDD:185679"
misc_feature complement(order(108331..108339,108361..108363,
108451..108453,108715..108717,108724..108726,
108733..108744))
/gene="ribF"
/locus_tag="CTDLC_0093"
/note="active site"
/db_xref="CDD:185679"
misc_feature complement(107923..108279)
/gene="ribF"
/locus_tag="CTDLC_0093"
/note="Riboflavin kinase; Region: Flavokinase; smart00904"
/db_xref="CDD:214901"
gene complement(108767..109492)
/gene="truB"
/locus_tag="CTDLC_0094"
/db_xref="GeneID:12387569"
CDS complement(108767..109492)
/gene="truB"
/locus_tag="CTDLC_0094"
/EC_number="4.2.1.70"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_005812024.1"
/db_xref="GI:385244180"
/db_xref="GeneID:12387569"
/translation="MELATESIEGVLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTL
DPFATGVMVMLIGRKFTRLSDIMLFEDKEYAAVAHLGTTTDTYDCDGKIVGRSKKVPT
MDEVLTCTSYFQGEIQQVPPMFSAKKVQGKKLYEYARQGLSIERRFATVTVNLRLVKY
EYPRLHFVVQCSKGTYIRSIAHELGNMLGCGAYLEELRRLRSGSFSIDQCIDGNLLDE
PGFDVSPYLRDANGLILQPAPVL"
misc_feature complement(108803..109492)
/gene="truB"
/locus_tag="CTDLC_0094"
/note="tRNA pseudouridine synthase B; Provisional; Region:
truB; PRK00989"
/db_xref="CDD:179199"
misc_feature complement(108857..109465)
/gene="truB"
/locus_tag="CTDLC_0094"
/note="Pseudouridine synthase, Escherichia coli TruB like;
Region: PseudoU_synth_EcTruB; cd02573"
/db_xref="CDD:211339"
misc_feature complement(order(108896..108898,108959..108976,
109046..109048,109109..109123,109271..109273,
109277..109279,109289..109291,109298..109303,
109310..109312,109355..109369,109373..109381,
109415..109417,109424..109426,109430..109432))
/gene="truB"
/locus_tag="CTDLC_0094"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:211339"
misc_feature complement(order(108959..108961,109358..109369))
/gene="truB"
/locus_tag="CTDLC_0094"
/note="active site"
/db_xref="CDD:211339"
gene complement(109530..109901)
/gene="rbfA"
/locus_tag="CTDLC_0095"
/db_xref="GeneID:12387570"
CDS complement(109530..109901)
/gene="rbfA"
/locus_tag="CTDLC_0095"
/codon_start=1
/transl_table=11
/product="Ribosome-binding factor A"
/protein_id="YP_005812025.1"
/db_xref="GI:385244181"
/db_xref="GeneID:12387570"
/translation="MAENRRMKKVNAMLREAIAKVILKDVKHPKISNRWITITRVSLS
RDLQSACVYVSIMPHENSQEETLAALKASAGFIAFQASKDLVLKYFPDLNFYVEDIFS
PQDHIESLLLKIAEQDKKTNP"
misc_feature complement(109542..109901)
/gene="rbfA"
/locus_tag="CTDLC_0095"
/note="ribosome-binding factor A; Validated; Region: rbfA;
PRK00521"
/db_xref="CDD:234787"
gene complement(109908..112604)
/gene="infB"
/locus_tag="CTDLC_0096"
/db_xref="GeneID:12387571"
CDS complement(109908..112604)
/gene="infB"
/locus_tag="CTDLC_0096"
/codon_start=1
/transl_table=11
/product="Bacterial Protein Translation Initiation Factor
2 (IF-2)"
/protein_id="YP_005812026.1"
/db_xref="GI:385244182"
/db_xref="GeneID:12387571"
/translation="MNRSANMEKVKLTKNLKLKIKNAQLTKAAGLDKLKQKLAQAGSS
DTKNSPASKAQTKEKSSKKTAGTPAPAPEVDSGATESTARRIRAKDRSSFAAEPTVTT
ALPGDASHLTLDAIPAMKAPEITSVTQKEQTLGECTDTSSVQQEEKKESSEETSPERV
EETLIIRTRTEPKSVVSIKPKFGPTGKHINHLLAKTFKAPAKETKAASTEETTQQQPR
QNDAASYNNKQQPSGTSSRPASSAPSYRRESTNNNNNAKRGSERDRSKRSDESVKAFT
GRDRYGLNEGSSEEDKWRKKRVHKTKKQAEEHVVQCPAHIKIALPITVKDLAAEMKLK
ASELIQKLFIHGMTYVVNDVLDSQTVVEYIGLEFGCTIEIDSSAKEKLCLLENAVRDE
VNATDPEKLIIRSPIVAFMGHVDHGKTTIIDALRQSNMAASEAGAITQHTGAFKCTTP
VGEITVLDTPGHEAFSAMRARGAEVCDIVVLVVAGDEGIKEQTIEAIEHAKGANITIV
VAINKCDKPNFNVETVYRQLAELDLLPEAWGGSIATINTSAKTGEGLQDLLEMLALQA
EVLELKADPSARARGLVIESELHKGLGAVATVLVQNGTLHLGEALVFNDCYGKVKTMH
DEHNQLLQSATPSTPVLITGLSAIPKAGDPFIVVKNEKVAKEIISARLAGQQRSAALQ
KKRPNFDAVLQNKKTLKLIIKADVQGSIEALAHSILNIRSEKVDVEILSSEVGDISES
DIRLASASKATVIGFHTSVESHAEPLIKNLNVKVCLFDIIYHAVDAIKEIMTGLLDPI
AEEKNLGAAEIKATFKSSQLGTIYGCLVTEGTIVRNQKIRIIRDKEVLWKGSLSSLKR
LKEDVKEVKKGMECGILLDNYQQAQVGDILQCYEVIYHPQKL"
misc_feature complement(109929..111668)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature complement(111492..111644)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature complement(110898..111389)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature complement(111348..111371)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature complement(order(111027..111029,111039..111041,
111144..111149,111216..111221,111273..111278,
111324..111329,111336..111338,111345..111350,
111360..111362,111366..111368))
/gene="infB"
/locus_tag="CTDLC_0096"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature complement(order(110955..110963,111057..111062,
111066..111071,111216..111218,111345..111365))
/gene="infB"
/locus_tag="CTDLC_0096"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature complement(111276..111296)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature complement(111288..111290)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature complement(111222..111233)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature complement(111171..111227)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature complement(111060..111071)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature complement(110955..110963)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature complement(110589..110870)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature complement(110238..110525)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature complement(109941..110192)
/gene="infB"
/locus_tag="CTDLC_0096"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene complement(112543..113940)
/gene="nusA"
/locus_tag="CTDLC_0097"
/db_xref="GeneID:12387572"
CDS complement(112543..113940)
/gene="nusA"
/locus_tag="CTDLC_0097"
/codon_start=1
/transl_table=11
/product="N utilization substance protein A"
/protein_id="YP_005812027.1"
/db_xref="GI:385244183"
/db_xref="GeneID:12387572"
/translation="MKSKHKSRALGLCSVSIIFFAFFPLPIRGVLMNKDLVAIFDYME
REKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCEKQIVEKCQNP
SKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHAERDVIYEE
YRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYALLYEVQ
ESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRSSNPQ
TDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILEDD
KVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED
PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVS
KYGEGKVDEKPQVED"
misc_feature complement(112816..113838)
/gene="nusA"
/locus_tag="CTDLC_0097"
/note="transcription termination factor NusA; Region:
NusA; TIGR01953"
/db_xref="CDD:162623"
misc_feature complement(113473..113838)
/gene="nusA"
/locus_tag="CTDLC_0097"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature complement(113248..113451)
/gene="nusA"
/locus_tag="CTDLC_0097"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:88421"
misc_feature complement(order(113359..113361,113365..113367,
113392..113394,113419..113421))
/gene="nusA"
/locus_tag="CTDLC_0097"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88421"
misc_feature complement(order(113263..113265,113365..113367,
113371..113373,113398..113400,113413..113415))
/gene="nusA"
/locus_tag="CTDLC_0097"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:88421"
misc_feature complement(112951..113157)
/gene="nusA"
/locus_tag="CTDLC_0097"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature complement(112831..113007)
/gene="nusA"
/locus_tag="CTDLC_0097"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature complement(112879..112890)
/gene="nusA"
/locus_tag="CTDLC_0097"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
gene complement(113965..115674)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/db_xref="GeneID:12387573"
CDS complement(113965..115674)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S1P"
/protein_id="YP_005812028.1"
/db_xref="GI:385244184"
/db_xref="GeneID:12387573"
/translation="MPKQADYTWGAKKNLDTIACLPEDVKQFKDLLYAMYGFTATEEE
PTSEVHPGAILKGTVVDISKDFVVVDVGLKSEGVIPMSEFIDSSEGLTVGAEVEVYLD
QTEDDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDIGMEAFLP
GSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQIT
IGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV
DKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGLIHV
SEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIG
LRVTAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSV
DKESKKITLGVKQLTPNPWDEIEVMFPVGSDISGVVTKITAFGAFVELQNGIEGLIHV
SELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEFLVHGGDAGHDAEEESS
DRD"
misc_feature complement(114031..115575)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="ribosomal protein S1; Region: rpsA; TIGR00717"
/db_xref="CDD:233102"
misc_feature complement(115327..115521)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture...; Region: S1_RPS1_repeat_ec1_hs1;
cd05687"
/db_xref="CDD:240192"
misc_feature complement(order(115435..115437,115441..115443,
115471..115473,115495..115497))
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240192"
misc_feature complement(115114..115275)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture...; Region: S1_RPS1_repeat_ec2_hs2;
cd04465"
/db_xref="CDD:239911"
misc_feature complement(order(115195..115197,115201..115203,
115225..115227,115249..115251))
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239911"
misc_feature complement(114817..115020)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
misc_feature complement(order(114934..114936,114940..114942,
114967..114969,114991..114993))
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:238094"
misc_feature complement(114556..114771)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
misc_feature complement(order(114676..114678,114682..114684,
114712..114714,114736..114738))
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:238094"
misc_feature complement(114295..114501)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec5; cd05690"
/db_xref="CDD:240195"
misc_feature complement(order(114415..114417,114421..114423,
114451..114453,114475..114477))
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240195"
misc_feature complement(114034..114240)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="S1_PNPase: Polynucleotide phosphorylase (PNPase),
), S1-like RNA-binding domain. PNPase is a
polyribonucleotide nucleotidyl transferase that degrades
mRNA. It is a trimeric multidomain protein. The C-terminus
contains the S1 domain which binds ssRNA; Region:
S1_PNPase; cd04472"
/db_xref="CDD:239918"
misc_feature complement(order(114154..114156,114160..114162,
114190..114192,114214..114216))
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239918"
misc_feature complement(114094..114099)
/gene="rpsA"
/locus_tag="CTDLC_0098"
/note="domain interface; other site"
/db_xref="CDD:239918"
gene 115919..116974
/gene="trxB"
/locus_tag="CTDLC_0099"
/db_xref="GeneID:12387574"
CDS 115919..116974
/gene="trxB"
/locus_tag="CTDLC_0099"
/EC_number="1.8.1.9"
/codon_start=1
/transl_table=11
/product="Thioredoxin reductase"
/protein_id="YP_005812029.1"
/db_xref="GI:385244185"
/db_xref="GeneID:12387574"
/translation="MNVVCGKSRVGYSSFFCKSREPFSCVFKALLSKFILGVPMTHAK
LVIIGSGPAGYTAAIYASRALLTPVLFEGFFSGIAGGQLMTTTEVENFPGFPEGVLGH
QLMDLMKTQAQRFGTQVLSKDITAVDFSVRPFVLKSGKETFTCDACIIATGASAKRLS
IPGAGDNEFWQKGVTACAVCDGASPIFRDKDLFVVGGGDSALEEAMFLTRYGKRVFVV
HRRDTLRASKVMVNKAQANEKIFFLWNSEIVKISGDTLVRSIDIYNNVDETTTTMEAA
GVFFAIGHQPNTAFLGGQVALDENGYIITEKGSSRTSVPGVFAAGDVQDKYYRQAITS
AGSGCMAALDAERFLEN"
misc_feature 116048..116965
/gene="trxB"
/locus_tag="CTDLC_0099"
/note="thioredoxin-disulfide reductase; Region:
TRX_reduct; TIGR01292"
/db_xref="CDD:233345"
misc_feature 116054..116593
/gene="trxB"
/locus_tag="CTDLC_0099"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; cl17500"
/db_xref="CDD:248054"
misc_feature 116492..116713
/gene="trxB"
/locus_tag="CTDLC_0099"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
gene 116932..117339
/gene="acpS"
/locus_tag="CTDLC_0100"
/db_xref="GeneID:12387575"
CDS 116932..117339
/gene="acpS"
/locus_tag="CTDLC_0100"
/EC_number="2.7.8.7"
/codon_start=1
/transl_table=11
/product="Holo-[acyl-carrier protein] synthase"
/protein_id="YP_005812030.1"
/db_xref="GI:385244186"
/db_xref="GeneID:12387575"
/translation="MHGSFRCRKIFRKLSIMFGVGIDIIEIDRIRKSYQTYGDRFLKK
IFTEGERVYCFSKSNPYASLAARFAAKEAVAKALGTGIGKLLKWKEIEMCRDSRQPQV
VVPEALLCSLGVKRVLLSVSHSREYATAVAIAE"
misc_feature 116980..117336
/gene="acpS"
/locus_tag="CTDLC_0100"
/note="4'-phosphopantetheinyl transferase; Provisional;
Region: acpS; PRK00070"
/db_xref="CDD:178838"
gene complement(117340..117837)
/locus_tag="CTDLC_0101"
/db_xref="GeneID:12387576"
CDS complement(117340..117837)
/locus_tag="CTDLC_0101"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812031.1"
/db_xref="GI:385244187"
/db_xref="GeneID:12387576"
/translation="MAYSLFSKKYFRMISMIPRFSIACIPLAVWLFSGAKLLVKSLYL
ALHYQFSLVLSAELFAIAWILASIKHRFILSKSMLKQHELDAQLLIKKISPWTFIKRS
FLSKRMFVIISMSVISSLLHRSTTIPLLSFLMCSSVSYALFKTSLAHWKSLKELKSKY
SVYYY"
gene 117936..118397
/locus_tag="CTDLC_0102"
/db_xref="GeneID:12387577"
CDS 117936..118397
/locus_tag="CTDLC_0102"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812032.1"
/db_xref="GI:385244188"
/db_xref="GeneID:12387577"
/translation="MLRLFQHILCFLEEDPSFVDVPQELSFVNEAFSGSMRWEVGRML
GSLLLLLGIFGGGCLLFRRFLRSRGHLPSGNSSIKILDQRVLASKTSIYVIKVANKTL
VVAERGERVTLLSEFPPNTDLNELIQKDQKKPSTPRGEMLSGFLKQFKEKK"
misc_feature 117984..118394
/locus_tag="CTDLC_0102"
/note="Flagellar biogenesis protein [Cell motility and
secretion]; Region: FliO; COG3190"
/db_xref="CDD:225731"
gene 118432..119328
/locus_tag="CTDLC_0103"
/db_xref="GeneID:12387578"
CDS 118432..119328
/locus_tag="CTDLC_0103"
/codon_start=1
/transl_table=11
/product="HAD superfamily hydrolase/phosphatase"
/protein_id="YP_005812033.1"
/db_xref="GI:385244189"
/db_xref="GeneID:12387578"
/translation="MSLQKLLVTDIDGTITHQSHLLHDRVVKALHQYYDSGWQLFFLT
GRYFSYAYPLFQNFSVPFLLGSQNGSSVWSSTDKEFIYFRSLSRDFLYVLEKYFEDLD
LIACIESGASNRDVYFRKGLGKTSQELKAILDAVYFPTPEAARLLVDVQGHLSEEFSY
EDFAIAKFFGEREEVKKIMDRFIQSPEVSSQVTMNYMRWPFDFKYAVLLLTLKDVSKG
FAVDQVVQTFYKENKPFIMASGDDANDIDLLSRGDFKIVIQTAPEEMHGLADFLAPPA
KDFGILSAWEAGELRYKQLVNP"
misc_feature 118441..119289
/locus_tag="CTDLC_0103"
/note="Predicted hydrolases of the HAD superfamily
[General function prediction only]; Region: Cof; COG0561"
/db_xref="CDD:223635"
misc_feature 118447..>118605
/locus_tag="CTDLC_0103"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cl17915"
/db_xref="CDD:248469"
misc_feature order(118459..118467,118561..118566)
/locus_tag="CTDLC_0103"
/note="active site"
/db_xref="CDD:119389"
misc_feature 118459..118476
/locus_tag="CTDLC_0103"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 118561..118563
/locus_tag="CTDLC_0103"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(119318..120214)
/gene="fabI"
/locus_tag="CTDLC_0104"
/db_xref="GeneID:12387579"
CDS complement(119318..120214)
/gene="fabI"
/locus_tag="CTDLC_0104"
/EC_number="1.3.1.9"
/codon_start=1
/transl_table=11
/product="enoyl-[actyl-carrier-protein]reductase (fabL)
(NADPH)"
/protein_id="YP_005812034.1"
/db_xref="GI:385244190"
/db_xref="GeneID:12387579"
/translation="MLKIDLTGKIAFIAGIGDDNGYGWGIAKMLAEAGATILVGTWVP
IYKIFSQSLELGKFNASRELSNGELLTFAKIYPMDASFDTPEDIPQEILENKRYKDLS
GYTVSEVVEQVKKHFGHIDILVHSLANSPEIAKPLLDTSRKGYLAALSTSSYSFISLL
SHFGPIMNAGASTISLTYLASMRAVPGYGGGMNAAKAALESDTKVLAWEAGRRWGVRV
NTISAGPLASRAGKAIGFIERMVDYYQDWAPLPSPMEAEQVGAAAAFLVSPLASAITG
ETLYVDHGANVMGIGPEMFPKD"
misc_feature complement(119342..120211)
/gene="fabI"
/locus_tag="CTDLC_0104"
/note="enoyl-[acyl-carrier-protein] reductase; Region:
PLN02730"
/db_xref="CDD:178331"
misc_feature complement(119348..120193)
/gene="fabI"
/locus_tag="CTDLC_0104"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature complement(order(119522..119533,119537..119548,
119627..119629,119651..119653,119681..119689,
119762..119764,119828..119839,119975..119983,
120089..120091,120149..120154,120164..120172))
/gene="fabI"
/locus_tag="CTDLC_0104"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature complement(order(119348..119359,119363..119401,
119405..119407,119420..119422,119429..119434,
119441..119443,119459..119470,119486..119488,
119495..119497,119579..119584,119588..119605,
119609..119614,119621..119626,119633..119638,
119648..119653,119657..119668,119672..119677,
119723..119725,119732..119734,119744..119746,
119753..119758,119765..119770,119777..119782,
119789..119809,119897..119899,119966..119977,
120119..120121))
/gene="fabI"
/locus_tag="CTDLC_0104"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(119585..119593,119597..119605,
119609..119614,119621..119626,119633..119638,
119648..119653,119660..119668,119672..119677,
119723..119725,119732..119737,119744..119746,
119753..119758,119765..119770,119777..119782,
119789..119809,119966..119977))
/gene="fabI"
/locus_tag="CTDLC_0104"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(119504..119506,119513..119515,
119522..119527,119627..119629,119639..119641,
119651..119653,119681..119683,119825..119827,
119831..119833))
/gene="fabI"
/locus_tag="CTDLC_0104"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(119627..119629,119639..119641,
119681..119683,119759..119761))
/gene="fabI"
/locus_tag="CTDLC_0104"
/note="active site"
/db_xref="CDD:187630"
gene 120452..122422
/locus_tag="CTDLC_0105"
/db_xref="GeneID:12387580"
CDS 120452..122422
/locus_tag="CTDLC_0105"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812035.1"
/db_xref="GI:385244191"
/db_xref="GeneID:12387580"
/translation="MSFGIGSACSSLWSRLCGSSGSEGNSEEGVTSSGSDAASGSGAA
SAVCQQPTSSASTEGNGPSVQIPMVGTYSANVQSLVNQGHGGRGFVNRCYQKYSASGV
SFTSISIGGGDSVDGPLPSVVITQQPQGSGSSARGAGSLQMGAVLSGMSTLTGNSIFD
LFGESQITNLIGDAVDGTSTSSSPLRDATKGASTADLIALFLALGGSGSQGVNSPLVA
TLLSRYSLSGSLDTKEIQELLEALKKLQIAAPTLDGARPGLGECCTHLCGALSSSSNP
IVSAVGIAGTGLTELLMLAAKSQRVRRGAVLCHDACKPCCTSACGYPSCGCADGEGGC
GSFGALVCSCAELWCCQESPTEEANLEEYARKLEALEVAVGSTTFMLGLHNLGISFSD
LVKGNVPNLPTPEQLETACKEAVSSLGKLMMRMTQEKWLSRLYSCAGILDNPFWKGAI
CSGLAGGTYMLPLQDLTSRVKVVTSSGNKQEAENLDLELLLPALSSLHVTGTEEDCDD
EGQGLNTDQLTMLLCKFCSVLSAAIGNEHIPIWLTPKQMTEILCVCMVMSGISIVGGP
SNQSTEYQEFQRVVMQESLTHLRSSLRASKRTNNRTRAEVRKLVVKYTSQSAFLTLLE
GLRDPNSKESKDLMRECFASWAQKAGVQSSSI"
gene complement(122535..123446)
/gene="yceC"
/locus_tag="CTDLC_0106"
/db_xref="GeneID:12387581"
CDS complement(122535..123446)
/gene="yceC"
/locus_tag="CTDLC_0106"
/EC_number="4.2.1.70"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase A"
/protein_id="YP_005812036.1"
/db_xref="GI:385244192"
/db_xref="GeneID:12387581"
/translation="MQEFIGTADRQIRLSSFLRTSLPHLPKKTILESVRYHGCRVNGR
IERFESYKLQPGDRVSLQIIEHSSPQLLWEDEHLCIYNKPAKQTSEDLAHQLNVHLVH
RLDRDTSGCILFAKHAKASSLITQLFKNREIDKRYIALVFGQPRQESGIITTYTAPCY
RRIGAVLFGNTDQNSGKITITKWEILTRYPKYTLLLCRPVTGRTHQIRLHMKTIGHPI
VGDVDYGNQEQPKNVVRTLLHAASLAFISPFSNEKIEVSSLTPSQDPYPFYADFSLKP
LKKPPINKVVLIQVVLEAKDSVSKRIV"
misc_feature complement(122673..123446)
/gene="yceC"
/locus_tag="CTDLC_0106"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:223638"
misc_feature complement(123201..123413)
/gene="yceC"
/locus_tag="CTDLC_0106"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature complement(order(123285..123287,123291..123314,
123333..123335,123339..123344,123351..123356,
123360..123365,123369..123374,123408..123410))
/gene="yceC"
/locus_tag="CTDLC_0106"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
misc_feature complement(122712..>123158)
/gene="yceC"
/locus_tag="CTDLC_0106"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature complement(order(122823..122825,123132..123143))
/gene="yceC"
/locus_tag="CTDLC_0106"
/note="active site"
/db_xref="CDD:211346"
gene 123463..124602
/gene="mutY"
/locus_tag="CTDLC_0107"
/db_xref="GeneID:12387582"
CDS 123463..124602
/gene="mutY"
/locus_tag="CTDLC_0107"
/EC_number="3.2.2.-"
/codon_start=1
/transl_table=11
/product="A/G-specific adenine glycosylase"
/protein_id="YP_005812037.1"
/db_xref="GI:385244193"
/db_xref="GeneID:12387582"
/translation="MCWYDFTRISMIRTAFFQDKKCFPLEALRSWFLESKRSFPWRDS
PTPYRVWVSEVMLQQTRAEVVVPYFLKWMERFPTLQDLAQARESDVVQLWEGLGYYSR
ARNLLAGARVITEIFGGEIPNDLALLSSIKGIGSYTANAILAFAFKQKNPAVDGNVLR
VMSRLFAIEESIDRMNTRREITGLCESLLPDQDPQVIAESFIELGARICKKQPLCEQC
PLRSFCTAYRQGTMEQYPVRNTRAAISRLFRAVVIVLYKDQVLMTKREEKEIMAGLYE
FPYYQLPKEDCCDIEKITHLVQKDYGETLHFVSSLPSQKQVFTRYRVTLFPHVFYTKY
SLPNSYTLAELSSLPSSSGHRRIKETFLVEYHKSLEKMVSCSGDK"
misc_feature 123538..124308
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="A/G-specific adenine glycosylase; Region: mutY;
TIGR01084"
/db_xref="CDD:130156"
misc_feature 123604..124077
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(123637..123645,123652..123654,123766..123768)
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 123853..123876
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(123883..123885,124054..124056,124066..124068)
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 123925..123927
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="active site"
/db_xref="CDD:28938"
misc_feature 124084..124143
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="iron-sulpphur binding domain in DNA-(apurinic or
apyrimidinic site) lyase (subfamily of ENDO3); Region:
FES; smart00525"
/db_xref="CDD:197771"
misc_feature 124198..124545
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="DNA glycosylase (MutY in bacteria and hMYH in
humans) is responsible for repairing misread A*oxoG
residues to C*G by removing the inappropriately paired
adenine base from the DNA backbone. It belongs to the
Nudix hydrolase superfamily and is important...; Region:
DNA_Glycosylase_C; cd03431"
/db_xref="CDD:72889"
misc_feature order(124267..124275,124408..124410,124417..124422)
/gene="mutY"
/locus_tag="CTDLC_0107"
/note="DNA binding and oxoG recognition site [nucleotide
binding]"
/db_xref="CDD:72889"
gene 124631..125407
/gene="ybgI"
/locus_tag="CTDLC_0108"
/db_xref="GeneID:12387583"
CDS 124631..125407
/gene="ybgI"
/locus_tag="CTDLC_0108"
/codon_start=1
/transl_table=11
/product="NIF3-like protein"
/protein_id="YP_005812038.1"
/db_xref="GI:385244194"
/db_xref="GeneID:12387583"
/translation="MQPRFFYMNVSDLLNILNELLHPEYFSDYGPNGLQVGNAQTAIR
KVAVAVTADLATIEKAIACEANVLLVHHGIFWKGMPYSITGILYQRMQRLMEGNIQLI
AYHLPLDAHTTIGNNWKVARDLGWEQLESFGSSQPSLGVKGVFPEMEVHDFISQLSAY
YQTPVLAKALGGKKRVSSAALISGGAYREISEAKNQQVDCFITGNFDEPAWSLAHELA
IHFLAFGHTATEKVGPKALAQYLKGAGLESVVFLDTDNPF"
misc_feature 124652..125404
/gene="ybgI"
/locus_tag="CTDLC_0108"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG0327"
/db_xref="CDD:30675"
misc_feature 124664..125356
/gene="ybgI"
/locus_tag="CTDLC_0108"
/note="NIF3 (NGG1p interacting factor 3); Region: NIF3;
pfam01784"
/db_xref="CDD:201973"
gene complement(125420..126208)
/locus_tag="CTDLC_0109"
/db_xref="GeneID:12387584"
CDS complement(125420..126208)
/locus_tag="CTDLC_0109"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812039.1"
/db_xref="GI:385244195"
/db_xref="GeneID:12387584"
/translation="MFKLIKSAFLIACCIVGYFWIKKESIVEQWLSQQLHAQVTVGNI
SPGLSKTKIRHLCIHNPLSSDKYPYAVEIEYVSLKYSIVTMILSKKIDISDVILQGTS
LTVFPCEGSSKTNWSFFWDSFINHSNELTKFHSSQFESSVDTIPVFIKRCLCTNTRVS
GIKNNYKEIPTTPVPSLEFRGSLSCSPLPTLGETARALLYLIVEESFYHANVSGDIAR
PLSKQARAYFNSSLSDYSYLKKRGTFPSNLTNELEGFMKELLFR"
gene complement(126336..127970)
/gene="groEL"
/locus_tag="CTDLC_0110"
/db_xref="GeneID:12387585"
CDS complement(126336..127970)
/gene="groEL"
/locus_tag="CTDLC_0110"
/codon_start=1
/transl_table=11
/product="molecular chaperone GroEL"
/protein_id="YP_005812040.1"
/db_xref="GI:385244196"
/db_xref="GeneID:12387585"
/translation="MVAKNIKYNEEARKKIQKGVKTLAEAVKVTLGPKGRHVVIDKSF
GSPQVTKDGVTVAKEVELADKHENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYTE
GLRNVTAGANPMDLKRGIDKAVKVVVDQIRKISKPVQHHKEIAQVATISANNDAEIGN
LIAEAMEKVGKNGSITVEEAKGFETVLDIVEGMNFNRGYLSSYFATNPETQECVLEDA
LVLIYDKKISGIKDFLPVLQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAV
KAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVE
GMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEK
KDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALS
APLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALES
AASVAGLLLTTEALIAEIPEEKPAAAPAMPGAGMDY"
misc_feature complement(126414..127964)
/gene="groEL"
/locus_tag="CTDLC_0110"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12849"
/db_xref="CDD:237230"
misc_feature complement(126414..127961)
/gene="groEL"
/locus_tag="CTDLC_0110"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:239460"
misc_feature complement(order(126414..126419,126426..126428,
126588..126590,126813..126815,126819..126821,
127200..127202,127284..127286,127380..127382,
127743..127745,127752..127754,127764..127766,
127788..127790,127794..127796,127824..127826,
127830..127835,127848..127850,127854..127865,
127896..127898,127947..127949,127959..127961))
/gene="groEL"
/locus_tag="CTDLC_0110"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:239460"
misc_feature complement(order(126480..126482,126486..126488,
126603..126605,126726..126728,126777..126779,
127521..127523,127698..127700,127710..127712,
127872..127880))
/gene="groEL"
/locus_tag="CTDLC_0110"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:239460"
misc_feature complement(order(126564..126566,126573..126578,
126582..126584,126609..126611,126663..126665,
127644..127646))
/gene="groEL"
/locus_tag="CTDLC_0110"
/note="stacking interactions; other site"
/db_xref="CDD:239460"
misc_feature complement(order(126741..126746,126846..126848,
127392..127394,127413..127415,127548..127550))
/gene="groEL"
/locus_tag="CTDLC_0110"
/note="hinge regions; other site"
/db_xref="CDD:239460"
gene complement(128008..128316)
/gene="groES"
/locus_tag="CTDLC_0111"
/db_xref="GeneID:12387586"
CDS complement(128008..128316)
/gene="groES"
/locus_tag="CTDLC_0111"
/codon_start=1
/transl_table=11
/product="10 kDa chaperonin GROES"
/protein_id="YP_005812041.1"
/db_xref="GI:385244197"
/db_xref="GeneID:12387586"
/translation="MSDQATTLKIKPLGDRILVKREEEASTARGGIILPDTAKKKQDR
AEVLALGTGKKDDKGQQLPFEVQVGNIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ
"
misc_feature complement(128014..128292)
/gene="groES"
/locus_tag="CTDLC_0111"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:238197"
misc_feature complement(order(128017..128025,128071..128073,
128077..128079,128092..128094,128122..128124,
128185..128190,128269..128271,128278..128280,
128284..128286,128290..128292))
/gene="groES"
/locus_tag="CTDLC_0111"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:238197"
misc_feature complement(128203..128244)
/gene="groES"
/locus_tag="CTDLC_0111"
/note="mobile loop; other site"
/db_xref="CDD:238197"
misc_feature complement(order(128128..128130,128161..128163))
/gene="groES"
/locus_tag="CTDLC_0111"
/note="roof hairpin; other site"
/db_xref="CDD:238197"
gene complement(128488..130314)
/gene="pepF"
/locus_tag="CTDLC_0112"
/db_xref="GeneID:12387587"
CDS complement(128488..130314)
/gene="pepF"
/locus_tag="CTDLC_0112"
/EC_number="3.4.24.-"
/codon_start=1
/transl_table=11
/product="Oligoendopeptidase F"
/protein_id="YP_005812042.1"
/db_xref="GI:385244198"
/db_xref="GeneID:12387587"
/translation="MTTATTSQTALRSRKDVPLSDCWDTKSLYASREVWQDELKKVGA
EGAPFWPHLSENNFDIKQPSSLRELLTTVFSIERTLDKLYVYAHLTYDEDIANQEAAA
DLKSITFLLTSFVEEISWIQPALIALPQQVVNMLLASPELQEYHFYLKKLFRLAPHTG
TSREEKILASSFPALEVAYKTFSSLTDSEIPFGEAVDSEGKSHPLSHALASLYMQSTD
RELRKNTYQKQCQRHHGYRLSLANLLNGKIQAHLFNAKARDYDSCLEAALFQNDISTS
VVTTLIDTVKQHTHLITEYFQLKQKALGLSDFHFYDVYAPLVASEASRHYSYQEAVTL
ICDSLSLLGNDYVETLRKGLTSDGWVDKYENTNKRSGAYSSGCYDSKPYILLNYTGTL
YDVSVVAHEGGHSMHSFLSHKHQSYHEAQYPIFLAEIASTLNETLLMEFLLKQAPSKE
EKIAILSRSLDTVFATLFRQTLFAAFELEMHSAAEQGLPLTEEFFSQSYEKLQRLFYG
DCITFDEHSCIEWARIPHFYYNFYVYQYATGIIASLCFSERILSGEEGAQEAYLTFLR
SGGSDFPIEILKKSGLDMTSSAPMLKAFSYIERKLEELASLL"
misc_feature complement(128491..130284)
/gene="pepF"
/locus_tag="CTDLC_0112"
/note="Oligoendopeptidase F [Amino acid transport and
metabolism]; Region: COG1164"
/db_xref="CDD:224086"
misc_feature complement(128503..130119)
/gene="pepF"
/locus_tag="CTDLC_0112"
/note="Peptidase family M3B Oligopeptidase F (PepF);
Region: M3B_PepF_3; cd09608"
/db_xref="CDD:189015"
misc_feature complement(order(128707..128709,128719..128721,
128737..128739,129031..129033,129103..129105,
129112..129117))
/gene="pepF"
/locus_tag="CTDLC_0112"
/note="active site"
/db_xref="CDD:189015"
misc_feature complement(order(129031..129033,129103..129105,
129115..129117))
/gene="pepF"
/locus_tag="CTDLC_0112"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:189015"
gene 130617..133220
/gene="clpB"
/locus_tag="CTDLC_0113"
/db_xref="GeneID:12387588"
CDS 130617..133220
/gene="clpB"
/locus_tag="CTDLC_0113"
/codon_start=1
/transl_table=11
/product="Clpb"
/protein_id="YP_005812043.1"
/db_xref="GI:385244199"
/db_xref="GeneID:12387588"
/translation="MEKFSDAVSEALEKAFELAKNSKHSYVTENHLLKSLLQNPGSLF
CLVIKDVHGNLGLLTSAVDDALRREPTVVEGTAVASPSPSLQQLLLNAHQEARSMGDE
YLSGDHLLLAFWRSTKEPFASWRKTVKTTSEALKELITKLRQGSRMDSPSAEENLKGL
EKYCKNLTVLAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPMLIGEPGVGKTAIAEGL
ALRIVQGDVPESLKEKHLYVLDMGALIAGAKYRGEFEERLKSVLKGVEASEGECILFI
DEVHTLVGAGATDGAMDAANLLKPALARGTLHCIGATTLNEYQKYIEKDAALERRFQP
IFVTEPSLEDAVFILRGLREKYEIFHGVRITEGALNAAVVLSYRYITDRFLPDKAIDL
IDEAASLIRMQIGSLPLPIDEKERELSALIVKQEAIKREQAPAYQEEAEDMQKAIDRV
KEELAALRLRWDEEKGLITGLKEKKNALENLKFAEEEAERTADYNRVAELRYSLIPSL
EEEIHLAEEALNQRDGRLLQEEVDERLIAQVVANWTGIPVQKMLEGESEKLLVLEESL
EERVVGQPFAIAAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLFN
KEEAMIRFDMTEYMEKHSVSKLIGSPPGYVGYEEGGSLSEALRRRPYSVVLFDEIEKA
DKEVFNILLQIFDDGILTDSKKRKVNCKNALFIMTSNIGSQELADYCTKKGTIVDKEA
VLSVVAPALKNYFSPEFINRIDDILPFVPLTTEDIVKIVGIQMNRVALRLLERKISLT
WDDSLVLFLSEQGYDSAFGARPLKRLIQQKVVTMLSKALLKGDIKPGMAVELTMAKDV
VVFKIKTNPAV"
misc_feature 130626..133193
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:234173"
misc_feature 130659..130814
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 130890..131045
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 131154..131627
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 131229..131252
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(131232..131255,131445..131447,131556..131558)
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 131433..131450
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 131607..131609
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 132396..132773
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 132429..132452
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(132432..132455,132645..132647,132771..132773)
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 132633..132650
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 132924..133166
/gene="clpB"
/locus_tag="CTDLC_0113"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene 133186..134706
/locus_tag="CTDLC_0114"
/db_xref="GeneID:12387589"
CDS 133186..134706
/locus_tag="CTDLC_0114"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812044.1"
/db_xref="GI:385244200"
/db_xref="GeneID:12387589"
/translation="MCLKLKQIQLCRTFVCLRHWMCFIGIGSLLLPTALRATERMRKE
PIPLLDKQQSFWNVDPYCLESICACFVAHRDPLSAKQLMYLFPQLSEEDVSVFARCIL
SSKRPEYLFSKSEEELFAKLILPRVSLGVHRDDDLARVLVLAEPSAEEQKARYYSLYL
DVLALRAYVERERLASAAHGDPERIDLATIEAINTILFQEEGWRYPSKQEMFENRFSE
LAAVTDSKFGVCLGTVVLYQAVAQRLDLSLDPVTPPGHIYLRYKDKVNIETTSGGRHL
PTERYCECIKESQLKVRSQMELIGLTFMNRGAFFLQKGEFLQASLAYEQAQSYLSDEQ
ISDLLGITYVLLGKKAAGEALLKKSAEKTRRGSSIYDYFQGYISPEILGVLFADSGVT
YQETLEYRKKLVMLSKKYPKSGSLRLRLATTALELGLVKEGVQLLEESVKDAPEDLSL
RLQFCKILCNRHDYVRAKYHFDQAQALLIKEGLFSEKTSYTLLKTIGKKLSLFAPS"
misc_feature 133261..134091
/locus_tag="CTDLC_0114"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2912"
/db_xref="CDD:32736"
misc_feature 133651..134085
/locus_tag="CTDLC_0114"
/note="Transglutaminase-like superfamily; Region:
Transglut_core2; pfam13369"
/db_xref="CDD:205548"
gene 134927..135361
/locus_tag="CTDLC_0115"
/db_xref="GeneID:12387590"
CDS 134927..135361
/locus_tag="CTDLC_0115"
/codon_start=1
/transl_table=11
/product="Inclusion membrane protein D"
/protein_id="YP_005812045.1"
/db_xref="GI:385244201"
/db_xref="GeneID:12387590"
/translation="MRFMTKVYANSIQQERVVDRIALLERCLDPSNSLPTAKRLVAVA
VATILAVALLVVAGLLFSGVLCSPVSVLAASLFFGVGAFLLGGALVGGVLTTEAVTRE
RLHRSQTLMWNNLCCKTAEVEQKISTASANAKSNDKTRKLGE"
gene 135444..135842
/locus_tag="CTDLC_0116"
/db_xref="GeneID:12387591"
CDS 135444..135842
/locus_tag="CTDLC_0116"
/codon_start=1
/transl_table=11
/product="Inclusion membrane protein E"
/protein_id="YP_005812046.1"
/db_xref="GI:385244202"
/db_xref="GeneID:12387591"
/translation="MECVKQLCRNHLCLDSLTGPVRSVLTQGTTAEKVQLVVSCLGVV
CSIICLALGIAAAAVGVSCSGFAIGLGVIAILLGIVLFAISALDVLEDHGLVGCPFKL
PCKSSPANEPTVQFFKGKNGSADKVILVTQ"
gene 135847..136161
/locus_tag="CTDLC_0117"
/db_xref="GeneID:12387592"
CDS 135847..136161
/locus_tag="CTDLC_0117"
/codon_start=1
/transl_table=11
/product="Inclusion membrane protein F"
/protein_id="YP_005812047.1"
/db_xref="GI:385244203"
/db_xref="GeneID:12387592"
/translation="MGDVMIQSVKTESGLVEGHRGICDSLGRVVGALAKVAKLVVALA
ALVLNGALCVLSLVALCVGATPVGPLAVLVATTLASFLCAACVLFIAAKDRGWIASTN
KC"
gene 136248..136751
/locus_tag="CTDLC_0118"
/db_xref="GeneID:12387593"
CDS 136248..136751
/locus_tag="CTDLC_0118"
/codon_start=1
/transl_table=11
/product="Inclusion membrane protein G"
/protein_id="YP_005812048.1"
/db_xref="GI:385244204"
/db_xref="GeneID:12387593"
/translation="MICCDKVLSSVQSMPVIDKCSVTKCLQTAKQAAVLALSLFAVFA
SGSLSILSAAVLFSGTAAVLPYLLILTTALLGFVCAVIVLLRNLSAVVQSCKKRSPEE
IEGAARPSDQQESGGRLSEESASPQASPTSSTFGLESALRSIGDSVSGAFDDINKDNS
RSRSHSF"
gene complement(136917..137744)
/gene="incA"
/locus_tag="CTDLC_0119"
/db_xref="GeneID:12387594"
CDS complement(136917..137744)
/gene="incA"
/locus_tag="CTDLC_0119"
/codon_start=1
/transl_table=11
/product="Inclusion membrane protein A"
/protein_id="YP_005812049.1"
/db_xref="GI:385244205"
/db_xref="GeneID:12387594"
/translation="MPMTTPTLIVTPPSPPAPSYSANRVPQPSLMDKIKKIAAIASLI
LIGTIGFLALLGHLVGFLIAPQITIVLLALFIISLAGNALYLQKTANLHLYQDLQREV
GSLKEINFMLSVLQKEFLHLSKEFATTSKDLSAVSQDFYSCLQGFRDNYKGFESLLDE
YKNSTEEMRKLFSQEIIADLKGSVASLREEIRFLTPLAEEVRRLAHNQQSLTVVIEEL
KTIRDSLRDEIGQLSQLSKTLTSQIALQRKESSDLCSQIRETLSSPRKSASPSTKSS"
misc_feature complement(137070..137618)
/gene="incA"
/locus_tag="CTDLC_0119"
/note="IncA protein; Region: IncA; pfam04156"
/db_xref="CDD:146672"
gene complement(137816..138058)
/locus_tag="CTDLC_0120"
/db_xref="GeneID:12387595"
CDS complement(137816..138058)
/locus_tag="CTDLC_0120"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812050.1"
/db_xref="GI:385244206"
/db_xref="GeneID:12387595"
/translation="MAIIFGELRVSLYPPFLFTYISRQAHPKAILHCADKNFLESLHS
NQCFRIANATCSTLSYMQKLIVNPVNNINANALENM"
gene 138142..138843
/gene="araD"
/locus_tag="CTDLC_0121"
/db_xref="GeneID:12387596"
CDS 138142..138843
/gene="araD"
/locus_tag="CTDLC_0121"
/EC_number="5.1.3.1"
/codon_start=1
/transl_table=11
/product="Ribulose-phosphate 3-epimerase"
/protein_id="YP_005812051.1"
/db_xref="GI:385244207"
/db_xref="GeneID:12387596"
/translation="MREEAMKKQGVLVAPSIMGADLACIGREARNIEESGADLIHIDV
MDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAA
ENIKEIISYIQKCGVQAGVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKFIPDT
IERIQFVKQAIQVLGREGSCLIEVDGGIDKESARACREAGADILVAASYFFEKDSINM
KEKVLLLQGEEHGAK"
misc_feature 138175..138789
/gene="araD"
/locus_tag="CTDLC_0121"
/note="Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
catalyses the interconversion of D-ribulose 5-phosphate
(Ru5P) into D-xylulose 5-phosphate, as part of the Calvin
cycle (reductive pentose phosphate pathway) in
chloroplasts and in the oxidative pentose...; Region: RPE;
cd00429"
/db_xref="CDD:73366"
misc_feature 138178..138819
/gene="araD"
/locus_tag="CTDLC_0121"
/note="ribulose-phosphate 3-epimerase; Region: rpe;
TIGR01163"
/db_xref="CDD:130231"
misc_feature order(138187..138189,138193..138195,138268..138270,
138367..138369,138586..138591,138595..138600,
138694..138696,138700..138702,138760..138765)
/gene="araD"
/locus_tag="CTDLC_0121"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73366"
misc_feature order(138208..138210,138217..138219,138277..138279,
138283..138288,138292..138294,138298..138309,
138376..138378,138388..138390,138451..138453,
138457..138462,138514..138516,138523..138525,
138529..138531,138541..138543,138583..138585,
138610..138612,138616..138618,138628..138630)
/gene="araD"
/locus_tag="CTDLC_0121"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:73366"
misc_feature order(138262..138264,138268..138270,138361..138363,
138694..138696)
/gene="araD"
/locus_tag="CTDLC_0121"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:73366"
gene 138830..139387
/gene="efp_1"
/locus_tag="CTDLC_0122"
/db_xref="GeneID:12387597"
CDS 138830..139387
/gene="efp_1"
/locus_tag="CTDLC_0122"
/codon_start=1
/transl_table=11
/product="Protein Translation Elongation Factor P (EF-P)"
/protein_id="YP_005812052.1"
/db_xref="GI:385244208"
/db_xref="GeneID:12387597"
/translation="MVLSSQLSVGMFISTKDGLYKVVSVSKVSGNKGDTFIKVSLQAA
GSDVTVERNFKAGQEVKEAQFEPRNLEYLYLEEDKYLFLDLGNYDKIYIPKEIMKDNA
MFLKAGVTVFALVHEGTVFSMELPHFLELMVAKTDFPGDSLSLSGGAKKALLETGVEV
LVPPFVEIGDVIKVDTRTCEYIQRV"
misc_feature 138830..139384
/gene="efp_1"
/locus_tag="CTDLC_0122"
/note="elongation factor P; Provisional; Region: PRK12426"
/db_xref="CDD:183522"
misc_feature <139088..139207
/gene="efp_1"
/locus_tag="CTDLC_0122"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
misc_feature order(139103..139105,139109..139111)
/gene="efp_1"
/locus_tag="CTDLC_0122"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:238094"
misc_feature 139214..139381
/gene="efp_1"
/locus_tag="CTDLC_0122"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:240220"
misc_feature order(139301..139303,139352..139354,139367..139372)
/gene="efp_1"
/locus_tag="CTDLC_0122"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240220"
gene 139400..139894
/gene="accB"
/locus_tag="CTDLC_0123"
/db_xref="GeneID:12387598"
CDS 139400..139894
/gene="accB"
/locus_tag="CTDLC_0123"
/EC_number="6.4.1.2"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase biotin carboxyl carrier
protein"
/protein_id="YP_005812053.1"
/db_xref="GI:385244209"
/db_xref="GeneID:12387598"
/translation="MDLKQIEKLMIAMGRNKMKRIVIKREGLELELERDTVPSIQEPV
FYDNRLFAGFSQERPIPTDQNLGNPIVKESIEKKESEAPAQGDFIVSPLVGTFYGSPS
PEAPAFIKPGDTVSEDTVVCIVEAMKVMNEVKAGMSGRVEEILITNGDPVQFGSKLFR
IVKA"
misc_feature 139400..139885
/gene="accB"
/locus_tag="CTDLC_0123"
/note="acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated; Region: PRK06302"
/db_xref="CDD:235777"
misc_feature 139664..139882
/gene="accB"
/locus_tag="CTDLC_0123"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature order(139751..139753,139778..139786,139805..139807)
/gene="accB"
/locus_tag="CTDLC_0123"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature 139781..139783
/gene="accB"
/locus_tag="CTDLC_0123"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene 139898..141271
/gene="accC"
/locus_tag="CTDLC_0124"
/db_xref="GeneID:12387599"
CDS 139898..141271
/gene="accC"
/locus_tag="CTDLC_0124"
/EC_number="6.3.4.14"
/codon_start=1
/transl_table=11
/product="biotin carboxylase"
/protein_id="YP_005812054.1"
/db_xref="GI:385244210"
/db_xref="GeneID:12387599"
/translation="MKKVLIANRGEIAIRIIRACHDLGLATVAVYSMADQEALHVLLA
DEAVCIGEAQAAKSYLKIANILAACEITGVDAVHPGYGFLSENANFASICESCGLTFI
GPSAESIATMGDKVAAKQLAKKIKCPVIPGSEGVVKDEVEGIRIAEKIGFPIVIKAVA
GGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPDVYIEKFIENPRHLEVQVIGDKHG
NYVYLGERDCTVQRRRQKLIEETPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFL
LDKEKRFYFMEMNTRIQVEHTITEEVTGIDLLKAQISVAKGEKLPWKQKNIKFKGHVI
QCRINAEDPINNFTPSPGRLDYYLPPAGPAVRVDGACYSGYAIPPYYDSMIAKVITKG
KNREEAIAIMKRALKEFHIGGVHSTIPFHQFMLDNPKFLLSDYDINYVDQLLASGSTF
LNLADGS"
misc_feature 139898..141232
/gene="accC"
/locus_tag="CTDLC_0124"
/note="acetyl-CoA carboxylase biotin carboxylase subunit;
Validated; Region: PRK08591"
/db_xref="CDD:236307"
misc_feature 139901..140221
/gene="accC"
/locus_tag="CTDLC_0124"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 140237..140860
/gene="accC"
/locus_tag="CTDLC_0124"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl17255"
/db_xref="CDD:247809"
misc_feature 140900..141220
/gene="accC"
/locus_tag="CTDLC_0124"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:214878"
gene 141494..141946
/gene="rplM"
/locus_tag="CTDLC_0125"
/db_xref="GeneID:12387600"
CDS 141494..141946
/gene="rplM"
/locus_tag="CTDLC_0125"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L13"
/protein_id="YP_005812055.1"
/db_xref="GI:385244211"
/db_xref="GeneID:12387600"
/translation="MEKRKDTKTTLAKASDDRNKAWYVVNAEGKTLGRLSSEVAKILR
GKHKVTFTPHVAMGDGVIVINAEKVRLTGAKRAQKVYHYYTGFISGMREVPFENMIAR
KPAYVIEHAVKGMLPKTKLGRRQMKSLRVLKGSSYAQYEAIKPIVLDA"
misc_feature 141557..141898
/gene="rplM"
/locus_tag="CTDLC_0125"
/note="Ribosomal protein L13. Protein L13, a large
ribosomal subunit protein, is one of five proteins
required for an early folding intermediate of 23S rRNA in
the assembly of the large subunit. L13 is situated on the
bottom of the large subunit, near the...; Region:
Ribosomal_L13; cd00392"
/db_xref="CDD:238230"
misc_feature order(141584..141586,141590..141595,141602..141604,
141611..141613,141623..141625,141707..141709,
141713..141715,141797..141802,141818..141826,
141830..141838,141842..141850,141854..141856,
141860..141862,141872..141874,141881..141886)
/gene="rplM"
/locus_tag="CTDLC_0125"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238230"
misc_feature 141800..141802
/gene="rplM"
/locus_tag="CTDLC_0125"
/note="L3 interface [polypeptide binding]; other site"
/db_xref="CDD:238230"
gene 141960..142361
/gene="rpsI"
/locus_tag="CTDLC_0126"
/db_xref="GeneID:12387601"
CDS 141960..142361
/gene="rpsI"
/locus_tag="CTDLC_0126"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="YP_005812056.1"
/db_xref="GI:385244212"
/db_xref="GeneID:12387601"
/translation="MTKNMIQESVATGRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPL
EVQRATILAPLRMLGDVNSFDLIIRVSGGGVQGQVIATRLGLARAVLQEKEDMKQELK
AQGFLTRDPRKKERKKYGRKKARKSFQFSKR"
misc_feature 141960..142358
/gene="rpsI"
/locus_tag="CTDLC_0126"
/note="30S ribosomal protein S9; Reviewed; Region: rpsI;
PRK00132"
/db_xref="CDD:178888"
gene complement(142409..143260)
/gene="ydhO"
/locus_tag="CTDLC_0127"
/db_xref="GeneID:12387602"
CDS complement(142409..143260)
/gene="ydhO"
/locus_tag="CTDLC_0127"
/EC_number="3.2.1.14"
/codon_start=1
/transl_table=11
/product="chitinase"
/protein_id="YP_005812057.1"
/db_xref="GI:385244213"
/db_xref="GeneID:12387602"
/translation="MPHQVLLSPVCDLLSNAEGIETQVLFGERICNHNHRHYAYSQLV
FSSIWKPYPGDSLQNIPLFSSQLQPPNAVVCSQEAFLDPWHIPLPFAAPLHIDNQNQV
SLSPASIALLNSNSRSNYAKAFCSTKEIRFLNSSFSPRDLVSFAEQLIDTPYVWGGRC
IHKQLPRNGVDCSGYIQLLYQVTGRNIPRNARDQYRDCSPVKDFSSLPIGGLIFLKKA
STGQINHVMMKISEHEFIHAAEKIGKVEKVILGNRAFFKGNLFCSLGEPPIEAVFGVP
KNRKAFF"
misc_feature complement(142469..143164)
/gene="ydhO"
/locus_tag="CTDLC_0127"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:223862"
misc_feature complement(<142547..142807)
/gene="ydhO"
/locus_tag="CTDLC_0127"
/note="NlpC/P60 family; Region: NLPC_P60; cl17555"
/db_xref="CDD:248109"
gene complement(143356..144093)
/gene="adk"
/locus_tag="CTDLC_0128"
/db_xref="GeneID:12387603"
CDS complement(143356..144093)
/gene="adk"
/locus_tag="CTDLC_0128"
/EC_number="2.7.4.3"
/codon_start=1
/transl_table=11
/product="adenylate kinase"
/protein_id="YP_005812058.1"
/db_xref="GI:385244214"
/db_xref="GeneID:12387603"
/translation="MDRSPLFLIIMGAPGSGKGTQSKLLASQLSLLHISSGDLLRDAV
SKDTPLSQEIKSYLDQGKLLPDTLVWKLVHEKLDEFQQDTLLRRLSFLSRSENSAILD
GFPRTVTQAKLLHEFLSSYFPNYKVILLDISDEEVLNRLTSRYICPACQGIYNEQQGF
SSCPKCSVELIRRSDDTLEVILDRIQTYKQETQPVLDYYTEKQKLITIDANAPTQQVF
QSILDSLSASLVYQERDCCNCDCDDED"
misc_feature complement(143413..144078)
/gene="adk"
/locus_tag="CTDLC_0128"
/note="adenylate kinase; Reviewed; Region: adk; PRK00279"
/db_xref="CDD:234711"
misc_feature complement(143443..144072)
/gene="adk"
/locus_tag="CTDLC_0128"
/note="Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP) to
adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for...; Region: ADK;
cd01428"
/db_xref="CDD:238713"
misc_feature complement(order(143764..143766,143776..143781,
143785..143790,143902..143904,143971..143973,
143986..143988))
/gene="adk"
/locus_tag="CTDLC_0128"
/note="AMP-binding site [chemical binding]; other site"
/db_xref="CDD:238713"
misc_feature complement(order(143530..143532,143542..143544,
143662..143664,143776..143778,143788..143790,
143971..143973))
/gene="adk"
/locus_tag="CTDLC_0128"
/note="ATP-AMP (Ap5A)-binding site [chemical binding];
other site"
/db_xref="CDD:238713"
gene 144300..144944
/gene="glnP"
/locus_tag="CTDLC_0129"
/db_xref="GeneID:12387604"
CDS 144300..144944
/gene="glnP"
/locus_tag="CTDLC_0129"
/note="protein GlnP"
/codon_start=1
/transl_table=11
/product="Glutamine transport system permease protein"
/protein_id="YP_005812059.1"
/db_xref="GI:385244215"
/db_xref="GeneID:12387604"
/translation="MEHYLLTAKLLLRGCGYTLLITAISLVCGFVLGWGIGTVNSRYF
PCRISKFLGNFYVVAVRGTPLFIQILIVYFGLPSLIKVNLSPLVAGLIALTLNSAAYL
AENVRAGINALPVQQWEAAKVLGYTGPQIFLHILYPQVFKNILPSLTNEFVSLIKESS
ILMVVGVPELTKVTKDIVARELNPMEMYLICAGLYLIMTSAFSYFARLSEKESA"
misc_feature 144327..144932
/gene="glnP"
/locus_tag="CTDLC_0129"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:226670"
misc_feature 144345..144908
/gene="glnP"
/locus_tag="CTDLC_0129"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(144390..144395,144402..144407,144420..144422,
144456..144467,144471..144500,144507..144512,
144516..144518,144585..144590,144594..144596,
144600..144602,144609..144614,144618..144620,
144630..144635,144642..144644,144693..144695,
144735..144740,144747..144749,144768..144779,
144786..144791,144828..144833,144861..144866,
144873..144878,144882..144887,144894..144899,
144906..144908)
/gene="glnP"
/locus_tag="CTDLC_0129"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(144474..144518,144768..144785)
/gene="glnP"
/locus_tag="CTDLC_0129"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(144516..144518,144570..144572,144786..144788,
144822..144824,144831..144833,144861..144863)
/gene="glnP"
/locus_tag="CTDLC_0129"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(144645..144683,144699..144704,144714..144716)
/gene="glnP"
/locus_tag="CTDLC_0129"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 144941..145642
/gene="glnQ"
/locus_tag="CTDLC_0130"
/db_xref="GeneID:12387605"
CDS 144941..145642
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="protein GlnQ"
/codon_start=1
/transl_table=11
/product="Glutamine transport ATP-binding protein"
/protein_id="YP_005812060.1"
/db_xref="GI:385244216"
/db_xref="GeneID:12387605"
/translation="MTVEVKDLTVAVKGKEILSNVSFSLVPRRITLFIGRSGSGKTTI
LRSLVGLTPISSGSISVVGDPPGFVFQQPELFPHMTVLDNCAHPQMIVKKLREREAKD
KALDLLGMLELREYASSYPHQLSGGQRQRVAIARALALDMRTILFDEPTSALDPFSAS
KFLQIVLSLKEQGMTIAISTHDILFINQCLDRVYLVDKGQIIDAYDSLHDDPQANSFV
KQYLSLQEGPTGSDE"
misc_feature 144941..145609
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:224051"
misc_feature 144947..145543
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 145043..145066
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(145052..145057,145061..145069,145151..145153,
145382..145387,145481..145483)
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 145142..145153
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 145310..145339
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 145370..145387
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 145394..145405
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 145469..145489
/gene="glnQ"
/locus_tag="CTDLC_0130"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene complement(145645..149061)
/locus_tag="CTDLC_0131"
/db_xref="GeneID:12387606"
CDS complement(145645..149061)
/locus_tag="CTDLC_0131"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812061.1"
/db_xref="GI:385244217"
/db_xref="GeneID:12387606"
/translation="MKRSPWYKIFGYYLLVGVPLALLALLPKFFSSESGKYLFLSVLN
KETGLQFEIEQLHLSWFGSQTAKKIRIRGIDSDSEIFAAEKIIVKGSLPRLLLYRFPK
ALTLTGWSLQIDESLSMNSPSLYHLDPGVLLSKIERSDITSELGSITMKTINGSTLSV
SGFYVKKTAEQLLIRALTKENDVPGSVAVEGALSPNFVLNVELSSVPASLFKLFIASP
SLDRILSTENLINLTAKAHQEKDSTLITLTAEGNQISAKLRGYVRDRAFLITQGGASS
VLLQPTITSRILSELSPLDTPIRSQEAYLFISEAKLPLSISKWSASDFSLQANLPQIS
VDTPDPNLSIRTENTKISIRKSDHLTVIRSSSSAILGGASPSYIHSTLSMDNHKHVAE
FHIQHSLLPHTYLRALLPKPIEINTPLEVPYYTLDIKGKYRNTQLSCEALLDNPLLRL
SCNLSGPLYALQFSGEGAYTLSERWKERLAPHFLQIQAIFSGKMHFSQKHVFFPKLSG
KLIAGDNEIFIHGKFGRASEEMKPSNSSLLVYGTLSSLPLDLYSPKFAPLQMTRYSFS
LHSDGGKALLKGNVKLFITDPESPHLEETKILIPDIVISSLDPSAPWTADNISVQASG
ELLQLPVDRLIRLQHKDLSLSRYIGETSEASFQLLYSPDKEETVDISSRFKTDALTGD
FRFVMNKELSLTEKTHGSLQWEISPERYSSFFEKASCPPSCILHRPTTFRLDLSKISC
LDKKTGYSCLSLLSQGGIEGKLSSTPLVFYDHLSKENFIVNNIGGSVYAQNVNDLIQY
QLNGNCLAPNQDNKTPVSFIIEGEARNIFSDETRACSQTATWVNIPTSFITGIFPISP
GVRSKLTSLAGPKIHVSIHNDFSRGEGPVTIKVDSENLTAYFPLVLTEQAILLEDDLT
ASLHINEEINKAFLREFNPLIAEGGAYSKHPVSLRVNKQNFYLPIKPYSFENFRIQSA
SLDFGKIEIANTGTMQDLFQFLDVEAEQQRVESWFTPIFFSVQKGQIICKRFDALIDG
RIRLALWGKTDIVRERLAMTLGIDPELIKKLFRNTMLKTKNFFLIKIRGPISSPEIDW
SSAYARIALLKSYTIAGPLNSLADKLFSSLGEPTPTQTVSPLPWEVSETE"
gene complement(149058..150335)
/locus_tag="CTDLC_0132"
/db_xref="GeneID:12387607"
CDS complement(149058..150335)
/locus_tag="CTDLC_0132"
/EC_number="3.1.-.-"
/codon_start=1
/transl_table=11
/product="Ribonuclease BN"
/protein_id="YP_005812062.1"
/db_xref="GI:385244218"
/db_xref="GeneID:12387607"
/translation="MLRPPSFLKKLLSSVRNNFIIKSILKAPKVLYHNEASKEACVLS
YYGLFSCVPILVFFLRLSQYLFISLDWKEWLLLHFPDYKAPILAIIEAAYSTTSNIGV
VLVSSFFVFCWAGILMLQSLEDGLNKIFCSGITQASLKRLISYLVITLVSPMIFIIVC
GSWIYITQILPINYPQLFSFSHSMAFIYIVSRLLPYALLYGILFCCYAFLSRVPTKKS
AAFFAATIAGSAWILSQKIFFCLQLHLFNYSFTYGALVALPSFLLLLYLYAIIYLFGG
ALTFLFQNKGFSILIPKEEIFPSSYFKFILCVYVLSLITEHFDNALPPPSANYLANKA
KASIGETSQCLDILEREGMILKYKEGYKPSHNIANLHINTIFDQLTKSPAFSKICSPS
LIPIQDALTHILTEIKKNSHNLSLSEIAKKVNS"
misc_feature complement(149472..150317)
/locus_tag="CTDLC_0132"
/note="Ribonuclease BN family enzyme [Replication,
recombination, and repair]; Region: Rbn; COG1295"
/db_xref="CDD:224214"
gene complement(150413..151216)
/locus_tag="CTDLC_0133"
/db_xref="GeneID:12387608"
CDS complement(150413..151216)
/locus_tag="CTDLC_0133"
/codon_start=1
/transl_table=11
/product="Metallothionein family protein"
/protein_id="YP_005812063.1"
/db_xref="GI:385244219"
/db_xref="GeneID:12387608"
/translation="MSRKPASNSSRNTKRSSDTSWEVIAQDYNKAVDRDGHFYHKEVI
LPNLLSKLHISRSSSLVDVGCGQGILEKHLPKHLPYLGIDLSPSLLRFAKKSASSKSR
RFLHHDMTQPVPADHHEQFSHATAILSLQNMESPEQAIAHTANLLAPQGRLFIVLNHP
CFRIPRLSSWLYDEPKKLLSRKIDRYLSPVAVPIVVHPGEKHSETTYSFHFPLSYWVQ
ALSNHNLLIDSMEEWISPKKSSGKRARAENLCRKEFPLFLFISALKISK"
misc_feature complement(150692..151057)
/locus_tag="CTDLC_0133"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:222171"
misc_feature complement(150746..151039)
/locus_tag="CTDLC_0133"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(150836..150838,150890..150895,
150962..150967,151010..151030))
/locus_tag="CTDLC_0133"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 151671..152084
/locus_tag="CTDLC_0134"
/db_xref="GeneID:12387609"
CDS 151671..152084
/locus_tag="CTDLC_0134"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812064.1"
/db_xref="GI:385244220"
/db_xref="GeneID:12387609"
/translation="MACCACVYGYDEICCREETAEKVVAVAVDCVLFHIAAAITTAVS
AVWLLIRLIACAIHNYCSPASERVNFFPITESRAEWFSLIPVLGPMVVAAVVYSKARE
EGYGHLDSLVCAMQSPWMLLDSLRLNRSELKIVMV"
gene 152143..152322
/locus_tag="CTDLC_013501"
/db_xref="GeneID:12387610"
CDS 152143..152322
/locus_tag="CTDLC_013501"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812065.1"
/db_xref="GI:385244221"
/db_xref="GeneID:12387610"
/translation="MVSFDLNDPVRNTDNHYRNINRMLNSATCAAGGIGLLTPVVCSP
RELSVLLKGLLVPKT"
gene 152226..153224
/locus_tag="CTDLC_013502"
/db_xref="GeneID:12387611"
CDS 152226..153224
/locus_tag="CTDLC_013502"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812066.1"
/db_xref="GI:385244222"
/db_xref="GeneID:12387611"
/translation="MCCWRHRIVNTSGMLSKGAFCFAQGPSSAEDLGHRIQHFVACSG
PAAGFYSLSNERIMFEEAAVPSVLEAVEATFWISAFARLRGNEPSTCDTVMMSCVIGC
ISLVCGAMFVAIVSCAVKISRIVRTMTQAHALRETIQRQLAARATDMRSAYSKLKGII
AIRALNEVERGHRKLRNKMITAFVANALITLAFCALLASAVIAAFFFGAASAGLASVF
FGCLWGGIGALAVGVLVGIVSGICQRNYKVEAARCIQRGALYALVLEKMQRFPKEFLK
DGVAKSVVAIQAGESLDTGELAWEEMPSITACLGREGMDAQAYSFLSASPLDARIE"
gene 153275..154033
/locus_tag="CTDLC_0136"
/db_xref="GeneID:12387612"
CDS 153275..154033
/locus_tag="CTDLC_0136"
/EC_number="3.1.1.1"
/codon_start=1
/transl_table=11
/product="Carboxylesterase"
/protein_id="YP_005812067.1"
/db_xref="GI:385244223"
/db_xref="GeneID:12387612"
/translation="MLPKALDQLLGRYMSYSFFRRKLAGIEFIECPGDPEAPVIIFCH
GYGASADHLTFFPTMCVCANLRPTWVFPHGIEQLPYQLGGGRAWFPLDTVLFEKLISS
QEITPDTDRLYQQLLDVDFEKPKQALEGLIHELERDRSEVIIGGFSQGAMMTTHLMLS
SRLPYRGALICSGAAVPNQSWEENASLCGKTPYIQSHGYDDPILPYFLGERLYKVLTA
SLKGEMVSFHGGHEIPVVMMQKIQESIALWSQLT"
misc_feature 153353..154021
/locus_tag="CTDLC_0136"
/note="Phospholipase/Carboxylesterase; Region:
Abhydrolase_2; pfam02230"
/db_xref="CDD:216940"
misc_feature <153704..153976
/locus_tag="CTDLC_0136"
/note="Serine hydrolase (FSH1); Region: FSH1; pfam03959"
/db_xref="CDD:217816"
gene 154052..154897
/gene="ywlC"
/locus_tag="CTDLC_0137"
/db_xref="GeneID:12387613"
CDS 154052..154897
/gene="ywlC"
/locus_tag="CTDLC_0137"
/codon_start=1
/transl_table=11
/product="Sua5/YciO/YrdC/YwlC family protein"
/protein_id="YP_005812068.1"
/db_xref="GI:385244224"
/db_xref="GeneID:12387613"
/translation="MFSQQIEESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKH
RSSQKALSVYVSSLEELEAVAQQSLGASSRKIIQKFLPGPLTLITKHNNPRFPQKTLG
FRIVNHPIVQQIIQKVGPFLATSANLSGFPSAVSADEVKQDFPEEDIVMISGECSIGL
ESTVIDPEERIVYRESAISIAEIETVLGAPCANLSKELGFREKIGIHVVKTPADLCSF
LLSRPHFKGVICHQPHPHTFYSVLRQALRSPTQEIIFVYDLCNTEYPILSRFLGVSYD
SGYAL"
misc_feature 154058..154621
/gene="ywlC"
/locus_tag="CTDLC_0137"
/note="Putative translation factor (SUA5) [Translation,
ribosomal structure and biogenesis]; Region: SUA5;
COG0009"
/db_xref="CDD:223088"
gene 154875..155822
/locus_tag="CTDLC_0138"
/db_xref="GeneID:12387614"
CDS 154875..155822
/locus_tag="CTDLC_0138"
/EC_number="3.4.13.19"
/codon_start=1
/transl_table=11
/product="Microsomal dipeptidase"
/protein_id="YP_005812069.1"
/db_xref="GI:385244225"
/db_xref="GeneID:12387614"
/translation="MIVDMHCDMLSHKNFSSSDPAVRSSPDQLIEGGVGLQACALFTE
SQECTTLDEQNQLFFSLIEQDERLTPLSYEPQVESSLQVVRSIENASGLGSDAQPLQE
LFHKLLLLHEQGPLAYIGLVWNFANRFGGGILEPKRLSRDGKNLLELLHALAIPVDLS
HCSDPLADDILDFTADKMPDMFVLASHSNFRAVQDIERNLLDVHAKEIFARDGVIGLN
GVNYFVGASLEDIKKHIAHAQELGILDSLVLGTDFFYTEEEKFFPNFSTAKDHPKLHA
LIKEAIPIDKAQSLLEERAQRFLNRVVSAQKKVVNHIAF"
misc_feature 154875..155798
/locus_tag="CTDLC_0138"
/note="Zn-dependent dipeptidase, microsomal dipeptidase
homolog [Amino acid transport and metabolism]; Region:
COG2355"
/db_xref="CDD:225230"
misc_feature 154875..155714
/locus_tag="CTDLC_0138"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:241750"
misc_feature order(154890..154892,154896..154898,155352..155354,
155433..155435,155628..155630)
/locus_tag="CTDLC_0138"
/note="active site"
/db_xref="CDD:238617"
gene complement(155819..157099)
/gene="oppA"
/locus_tag="CTDLC_0139"
/db_xref="GeneID:12387615"
CDS complement(155819..157099)
/gene="oppA"
/locus_tag="CTDLC_0139"
/note="OppA"
/codon_start=1
/transl_table=11
/product="Oligopeptide-binding protein"
/protein_id="YP_005812070.1"
/db_xref="GI:385244226"
/db_xref="GeneID:12387615"
/translation="MYVRSIFFSIIAFLTVGCSFSPPESGLIIAIHDDPRSLSPEKGE
NAFHFSLSKALFATLFREELSGLTPALVSSYQVSEDGRFYRFCIRKDAKWSDGSLLLA
EDVIAAWEHTKQAGRYSLLFEKLSFRASSSSEILIELKEPEPQLLAILASPFFAVYRP
ENPFLSSGPFMPKTYVQGQTLVLQKNPYYYDHAHVELHSIDFRIIPNIYTALHLLRRG
DVDWVGQPWHQGIPFELRTTSALYTHYSVDGTFWLILNPKDPVLSSLSNRQRLIAAVQ
KEKLVKQALGTQYRVAESSPSPEGIIAHQEASTPFPGKITLIYPNNITRCQRLAEVLQ
EQCRDAGIQLTLEGLEYHVFVQKRATQDFSVSTATSIAFHPLAKSKFDQTALDNFTCL
PLYHIEYDYILSRPLDQIVHYPSGSVDLTYAHFH"
misc_feature complement(155984..157021)
/gene="oppA"
/locus_tag="CTDLC_0139"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cl01709"
/db_xref="CDD:242664"
misc_feature complement(155975..156901)
/gene="oppA"
/locus_tag="CTDLC_0139"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:215949"
gene 157276..157962
/gene="ypdP"
/locus_tag="CTDLC_0140"
/db_xref="GeneID:12387616"
CDS 157276..157962
/gene="ypdP"
/locus_tag="CTDLC_0140"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812071.1"
/db_xref="GI:385244227"
/db_xref="GeneID:12387616"
/translation="MLNETLFVLQILVVIGFGAFFAARNLIMLAAWASLLSIIMNIFV
LKQIVLFGFEVTAADVYVIGLFSCLNCAREFWGKESTRKVIFVSWCSTLSFLILTQLH
LHLKPSPGDISQLHYEALFAPSLRIISASVITTMIVQFVDFKVFGWLKKHSQGRVFGL
RSACSVALSQSIDTVIFSFLGLYGLVANLPDVMMFSLLSKGTALLLASPCVALAKVFY
NRLNKEEAHF"
misc_feature 157345..157938
/gene="ypdP"
/locus_tag="CTDLC_0140"
/note="conserved hypothetical integral membrane protein;
Region: TIGR00697"
/db_xref="CDD:129780"
gene 158146..158592
/gene="secA_1"
/locus_tag="CTDLC_0141"
/db_xref="GeneID:12387617"
CDS 158146..158592
/gene="secA_1"
/locus_tag="CTDLC_0141"
/codon_start=1
/transl_table=11
/product="Preprotein translocase subunit-like protein"
/protein_id="YP_005812072.1"
/db_xref="GI:385244228"
/db_xref="GeneID:12387617"
/translation="MLKKPNRNDPCPCGSGKKYKQCCLKSQALTARHTPEGKFKFSIT
ASPAAGASTEGFTKLFRQSVDSYTSEQKEGMSRFLITKNKEPIGKRAIRKAKAKEERI
ISEKLSQHEFQVMDTEVSGEDIQSSLDYEQFLPTEEDYRVQKEEDS"
misc_feature 158149..158586
/gene="secA_1"
/locus_tag="CTDLC_0141"
/note="Predicted metal-binding protein related to the
C-terminal domain of SecA [General function prediction
only]; Region: COG3318"
/db_xref="CDD:225855"
misc_feature 158164..158220
/gene="secA_1"
/locus_tag="CTDLC_0141"
/note="SEC-C motif; Region: SEC-C; pfam02810"
/db_xref="CDD:202406"
gene 158661..158733
/locus_tag="CTDLC_r001"
/db_xref="GeneID:12387618"
tRNA 158661..158733
/locus_tag="CTDLC_r001"
/product="tRNA-Thr"
/db_xref="GeneID:12387618"
gene 158743..158825
/locus_tag="CTDLC_r002"
/db_xref="GeneID:12387619"
tRNA 158743..158825
/locus_tag="CTDLC_r002"
/product="tRNA-Tyr"
/db_xref="GeneID:12387619"
gene 158992..159849
/locus_tag="CTDLC_0142"
/db_xref="GeneID:12387620"
CDS 158992..159849
/locus_tag="CTDLC_0142"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812073.1"
/db_xref="GI:385244229"
/db_xref="GeneID:12387620"
/translation="MSDSDKIINDCRFDFNTTIHGDLLASNLTTEGDVTVKSISAKES
FSVKRNVDVNENDIIVNGFTGAAGYDLTTQGKISINLNGNRLSNVKRPEKDSQPVPAN
YIRTPEYYFCSLQDGARIEWKRGQKLPLIGPSRLVYQSSRIDEFIRFVSFEEDKTKNQ
VKINLSGTTGLQMLAKGVYIINVGVGKRWGWNNGYGGDYCLAVPLGKEYSESSTFSRG
GYYASTAVGTAIHIRKESTNPDGPFSSSDTELMKTLLEVRYKGGDYVDKSALSTLYFG
VLVYPEIGG"
gene 159851..160693
/locus_tag="CTDLC_0143"
/db_xref="GeneID:12387621"
CDS 159851..160693
/locus_tag="CTDLC_0143"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812074.1"
/db_xref="GI:385244230"
/db_xref="GeneID:12387621"
/translation="MKKPVFTGGAPIPGISTEEGTGVKDQNLWMRNATLKVEGDATID
DTLTSRDLKVTGPTIHTDLDLSVGGDVKGGRTVLGETVLEGDFNIKCNQGQVPQFTNL
SDPLSARDAITFDYYRDRSTQAYNCATHRNGALVNGNRFIDLRLHNSEDSESYTPMYR
NRFYWKDNDQKKLYLKSPGIYQVAFQIFRSGGYHSGNDDPTIFLRLYTSAYEYTNLCT
GDTRGFNPGNTTNTSLYSIFSIPSIGNEHPFIQVFTKIHVNIAYSMINVIWFPFGSSY
KEAD"
gene 160693..161550
/locus_tag="CTDLC_0144"
/db_xref="GeneID:12387622"
CDS 160693..161550
/locus_tag="CTDLC_0144"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812075.1"
/db_xref="GI:385244231"
/db_xref="GeneID:12387622"
/translation="MTTPDNNTIDVSFPTFVRLNVATTDLADGNKSNAVTITETATAN
YVNVTQDLTSSTAKLECTQDLIAQGKLIVTNPKSDISFGGRVNLADNTVNYSNGGAEV
SFTNINSRQGKQYVPYGLYKNGEPKISMRSALSGGHVGSGDTGGWGAEVLWDAYTEQL
KDMTDGAVTLNSSNRGKLSFTASPEAPVLFRLSVFMRKNGDWLDNGVGGRVMLYVNTT
DSAGKTVRRLLGIAVCLGSTWYTTVPMFWCAATYYATSSGFFQLIVGERNFRVSSLSW
SVVRLPVVP"
gene 161736..163580
/locus_tag="CTDLC_0145"
/db_xref="GeneID:12387623"
CDS 161736..163580
/locus_tag="CTDLC_0145"
/EC_number="2.7.11.1"
/note="Serine/threonine protein kinase"
/codon_start=1
/transl_table=11
/product="NIRV family protein"
/protein_id="YP_005812076.1"
/db_xref="GI:385244232"
/db_xref="GeneID:12387623"
/translation="MEERAAVEYWGDYKVIAELGHGLWSRDVLAEHRFIKKRYILKIL
PSELSSSENFMRVFQEVIVQLAAIRHASLVAIENVSREGDRYFVVTEENGGTISLAQY
LSGRKLSEEEVVHLIQQLCDALELVHSIGLAHGQIHLHSVHVSFFNGIANIYLPEVGF
ASLLRERMFSTIMQSGSARESITRIRDLLMFEAPEEQEVFGREADVYSVGVLAYYLLV
GSFPWGSFPKPSLCMPDSWYDWDGFILSCLQQQREVRPKCLREALRRKTSGEQLQVTL
DSCREPLREMEIEDTPTELGPPSALIREGERLCEVKEEQHAFVLVEAKSIDEVMVTTV
DSEEELESSEGYANPLQSLLAREPVVSRYVEVEREEIKPQPLLTEMIFIEGGEFSRGS
GDGQRDELPVHNITLPGFFLDIHPVTNEQFVRFLECVGSEQDEHYNELIRLKDSRIQR
RSGRLIIEPGYAKHPVVGVTWYGASSYACWIGKRLPSEAEWEVAASGGKLGLRYPTGE
EIDKSKANFFSSDTTPVMSYPSSILGLYDMAGNVYEWCQDWYSYDFYESSALEPDAPL
GPPQGVYRVLRGGCWKSLKDDLRCAHRHRNNPGAINSTYGFRCAKDVK"
misc_feature 161772..162527
/locus_tag="CTDLC_0145"
/note="Serine/Threonine protein kinases, catalytic domain;
Region: S_TKc; smart00220"
/db_xref="CDD:214567"
misc_feature 161790..162509
/locus_tag="CTDLC_0145"
/note="Catalytic domain of Protein Kinases; Region: PKc;
cd00180"
/db_xref="CDD:173623"
misc_feature order(161790..161804,161814..161816,161853..161855,
161859..161861,161955..161957,162003..162011,
162027..162029,162033..162035,162141..162143,
162147..162149,162153..162158,162162..162164,
162204..162206,162213..162215,162255..162260,
162300..162305)
/locus_tag="CTDLC_0145"
/note="active site"
/db_xref="CDD:173623"
misc_feature order(161790..161804,161814..161816,161853..161855,
161859..161861,161955..161957,162003..162011,
162027..162029,162141..162143,162147..162149,
162153..162158,162162..162164,162204..162206)
/locus_tag="CTDLC_0145"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:173623"
misc_feature order(161802..161804,162027..162029,162033..162035,
162141..162143,162147..162149,162153..162155,
162213..162215,162255..162260,162300..162305)
/locus_tag="CTDLC_0145"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173623"
misc_feature order(162201..162221,162255..162260,162300..162305)
/locus_tag="CTDLC_0145"
/note="activation loop (A-loop); other site"
/db_xref="CDD:173623"
misc_feature 162852..163577
/locus_tag="CTDLC_0145"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1262"
/db_xref="CDD:224182"
misc_feature 162864..163568
/locus_tag="CTDLC_0145"
/note="Formylglycine-generating sulfatase enzyme; Region:
FGE-sulfatase; pfam03781"
/db_xref="CDD:217725"
gene 163591..165582
/gene="ligA"
/locus_tag="CTDLC_0146"
/db_xref="GeneID:12387624"
CDS 163591..165582
/gene="ligA"
/locus_tag="CTDLC_0146"
/EC_number="6.5.1.2"
/codon_start=1
/transl_table=11
/product="NAD-dependent DNA ligase"
/protein_id="YP_005812077.1"
/db_xref="GI:385244233"
/db_xref="GeneID:12387624"
/translation="MGAVSRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQ
EIEVQHPEWKVSWSPTMYLGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKL
LGYSPGYSLELKIDGIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQ
EAPEDLEVRGEVFLSYEAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKL
DLSVYGLITDQKKRSHFENLQLCSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALP
MAIDGVVIKVDNIAYQDRLGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTP
VAELAPVFLSGSRVSRASLYNQDEIEKKDIRIGDSVYVEKGGEVIPKIVGINLAKRSL
ESEPWKMPSLCPVCHEPVVKEKVSVRCVNPLCSGGMLEKICFFASKSALNIDHLGEKV
VTKLFEVGLISSCSDIFALAEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLLTALS
IPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAFFSKHENREEIR
RMQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRCLGGKVSSSVSKST
YAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAKSVS"
misc_feature 163615..164526
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="NAD+ dependent DNA ligase adenylation domain. DNA
ligases catalyze the crucial step of joining the breaks in
duplex DNA during DNA replication, repair and
recombination, utilizing either ATP or NAD(+) as a
cofactor, but using the same basic reaction...; Region:
LIGANc; cd00114"
/db_xref="CDD:238062"
misc_feature 163624..165549
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="DNA ligase, NAD-dependent; Region: dnlj; TIGR00575"
/db_xref="CDD:233030"
misc_feature order(163837..163839,163924..163926,163930..163932,
163993..163995,164101..164103,164257..164259,
164437..164439,164443..164445)
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="nucleotide binding pocket [chemical binding]; other
site"
/db_xref="CDD:238062"
misc_feature order(163930..163932,163936..163941)
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="K-X-D-G motif; other site"
/db_xref="CDD:238062"
misc_feature 163930..163932
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="catalytic site [active]"
/db_xref="CDD:238062"
misc_feature 164533..164778
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="NAD-dependent DNA ligase OB-fold domain; Region:
DNA_ligase_OB; pfam03120"
/db_xref="CDD:145978"
misc_feature 164797..164865
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="NAD-dependent DNA ligase C4 zinc finger domain;
Region: DNA_ligase_ZBD; pfam03119"
/db_xref="CDD:202542"
misc_feature 165166..165255
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="Helix-hairpin-helix motif; Region: HHH; pfam00633"
/db_xref="CDD:109681"
misc_feature 165211..165234
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:238013"
misc_feature 165352..165564
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="Breast Cancer Suppressor Protein (BRCA1),
carboxy-terminal domain. The BRCT domain is found within
many DNA damage repair and cell cycle checkpoint proteins.
The unique diversity of this domain superfamily allows
BRCT modules to interact forming homo...; Region: BRCT;
cd00027"
/db_xref="CDD:237994"
misc_feature order(165397..165399,165409..165411,165418..165420,
165427..165429,165433..165435)
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="Dimer interface [polypeptide binding]; other site"
/db_xref="CDD:237994"
misc_feature order(165544..165546,165556..165558)
/gene="ligA"
/locus_tag="CTDLC_0146"
/note="BRCT sequence motif; other site"
/db_xref="CDD:237994"
gene 165680..170029
/locus_tag="CTDLC_0147"
/db_xref="GeneID:12387625"
CDS 165680..170029
/locus_tag="CTDLC_0147"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812078.1"
/db_xref="GI:385244234"
/db_xref="GeneID:12387625"
/translation="MANPSTPSFNHSDLSLQGRLRASSQQCTQAGQGDPQPLSPESRG
LTSNFSTRRDLIDVVEESIETAKGSELKKLRIYEIALKILTIIGAAILFAVPLCMLLG
VPLWIPIVTCIGVGIAFSIAKGCLQKRCQQIREEYRALHLYHRYLLSNKDSIDGTLLS
RFDIRFRKAEEKLHGLDLDKREANHPLEADKRYDFAGLAHQRYQVDAALGISSSQDAF
WRGVAQQVKSVKDDVVLGDKASTDLYPIAQQALQAAGVGFSGAAGKESLLDLAKSLSS
LFAWGSQVGKDSHEALQQYQMRFLSSPILATWCGAGFSASAQDFVLKGENILDIASEN
HTKMQNAIKRVQLVSVLGKMRNWKEKIDTLIQNKNLDQDSLRKLYQDIEKAMHKVCIE
DGVSTSIQTQVRKVTQKYLRQDLQELLNKKAPLNESDLSKMQKGISSCANLVVTLLES
QLGTSGQTPIKEVEESIYRDLIATILQMGSAAGGVTPLVDGVHKAIREGKALRSELSR
AMSLHPRQSFLGVQSAVEKLQAFIRDPKWGASAVHTSAEETLAQKQKFVSDLTRIQTS
LADWRERYGLFEETKLNHIVSTDFVSRTEAFLDTLKNVAEACSLEQAVAELKDCEDAM
KADLTHVEQKMNPTEIESAREEFKRLMEELAGIQEQLEQIAQPIYEEGVSGERLLLNT
VFFHPEVLRKKVQAKEASLEALTKGEQPSPTKKKTLKQLSEGCEYFSSLVSKINALKT
ILEGSRGKKIASQDIRQLIGLTDELALELSSFQQDSLESLLYGLEGLSIPAASIEQKK
GSPKSSSIAEKVVYASHQRVHNGVKAKVNRTLEAFSQLIKGLRGSLRNAMITKAVVAA
VLSVAFSCLAIALFSVQLTWLPIMLCVLALVLEAIPSALSIWVEKRNWKYEVASLAKQ
LVSDGRKLPYPDLGDQNIKHLEKIRDVYGLDGVAELRVAEAALLGVQKLPEEQKQESL
KSAVKALRADAKVLNKKFKKLPESYQPQHSEVTGVQGVTEQESRDDVLVAQDMAAIEE
LQDQYHAACLQFESVSTRFLAEQRKAKFLEELLVQKRRDVSHLSHQEAHYTQVVSHLK
ELISMRKGASTQHASKEEISTKMRELLSLDDQLLKAHTAQDVNRDNSINGQLQQQFKK
LSEEGSLQKVKALLELNMCLGNAGQTLYHSRLKREVFEASLSGTSRQLLQYGEDLFAS
YDGSDRSALLRFVLGSGYEMISEASSELKSLRKRWKRSASQAAIAPEDYEKVCRVLER
FLKARDSLRPKLGLPLGKSSDATVGLQHQIRDNQRVKARVTACYQESCRNVLQHLEDW
VRKTRQESAECQKVETKIREFCQKAGSKENLAESTEMLFSSLEEDLNKIPLDVLRAIL
RSLSSKVLHIRDQKLELEKLEEQFAKTNAIVKAKEAEFEKNGEVWHNQYQMLKSQMEK
LESQKRRLTDKKE"
gene complement(170092..171633)
/gene="mhpA"
/locus_tag="CTDLC_0148"
/db_xref="GeneID:12387626"
CDS complement(170092..171633)
/gene="mhpA"
/locus_tag="CTDLC_0148"
/codon_start=1
/transl_table=11
/product="FAD-dependent monooxygenase"
/protein_id="YP_005812079.1"
/db_xref="GI:385244235"
/db_xref="GeneID:12387626"
/translation="MLVRITMIDVLIMGANPSGLILASILQQHRARIKVIDSRDSITA
SLPLPLHSLPVVLSSSSLELLDNINLLGDLLDKGRKIFGARYHWKQRTVLFKFNQSSA
SRCPFSLLISYNELVTHLLEEFERLGGVVNWATRPVTQVEQNLFIESTKSSSQVYEGR
EIFTPKWIIACEMDADPDLKDLLKTQIKTKKIYKEALFVDCEEGEPFEESHIHLLPVT
KSFVNFVFYNPYRGSRQLYLANTSGPLSSKFKNKLLYTYGLALAEDPLSISSSLLQYP
FCHDRYIFLGSIANNLSFSYLSGVNSNIHDAFNLGWKLLPVIKKAASSQLILSKELKT
SHVLPHFNEVHQKRATKLLFSNMYTPALMYYYLKGCKQLDAAEGELYYPSHRASKYEA
SDIIKVSPNDKEIQGPRPGSRALDIRLDTGNYLLDSLKNAKHLLVFFKERPDLVHALL
EEYGEWVDVIVTEDPKVHKLYHANPESLFIIRPDRYIGYRTHTFKLHELISYLLRIFA
AENAN"
misc_feature complement(170557..171618)
/gene="mhpA"
/locus_tag="CTDLC_0148"
/note="Dehydrogenases (flavoproteins) [Energy production
and conversion]; Region: FixC; COG0644"
/db_xref="CDD:30989"
gene complement(171815..172762)
/locus_tag="CTDLC_0149"
/db_xref="GeneID:12387627"
CDS complement(171815..172762)
/locus_tag="CTDLC_0149"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase family protein"
/protein_id="YP_005812080.1"
/db_xref="GI:385244236"
/db_xref="GeneID:12387627"
/translation="MKKFATFLCVLLSGSGFAAPVEVPGFPSIPETYITINDKELGLQ
EHCRGVNVLSCGYNLVGMFHTPTTPMPLGGYPTVIFFHGFRGNCTGKDGVYRDLARLL
TANGIAVARFDMAGCGNSEGICDQIPARTYLRNGEDILATVAKYPEVNPHRIGIAGIS
LGCHTTIHLASTYRPRDYTVQAISVWAPIADGVILLKEICATIGLTMTQFSDMGEVGK
AFGFKQLPLKLCRDDIDFFLGIQDHILLLSLPRRIPVLHQQGLEDHVVSTAHQRLFLG
AAPAQMLSKSYPETPHEIASSPYRQEVLQEILTHFQSNL"
misc_feature complement(171818..172687)
/locus_tag="CTDLC_0149"
/note="Hydrolases of the alpha/beta superfamily [General
function prediction only]; Region: COG1073"
/db_xref="CDD:223999"
misc_feature complement(172325..172597)
/locus_tag="CTDLC_0149"
/note="Putative lysophospholipase; Region: Hydrolase_4;
pfam12146"
/db_xref="CDD:221442"
gene 173161..173319
/gene="rpmG"
/locus_tag="CTDLC_0150"
/db_xref="GeneID:12387628"
CDS 173161..173319
/gene="rpmG"
/locus_tag="CTDLC_0150"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="YP_005812081.1"
/db_xref="GI:385244237"
/db_xref="GeneID:12387628"
/translation="MASKNREIIKLKSTESSEMYWTVKNKRKTSGRLELKKYDRKLRK
HVIFKEAK"
misc_feature 173161..173316
/gene="rpmG"
/locus_tag="CTDLC_0150"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00595"
/db_xref="CDD:179075"
gene 173355..174866
/locus_tag="CTDLC_0151"
/db_xref="GeneID:12387629"
CDS 173355..174866
/locus_tag="CTDLC_0151"
/codon_start=1
/transl_table=11
/product="lipoprotein release inner membrane protein"
/protein_id="YP_005812082.1"
/db_xref="GI:385244238"
/db_xref="GeneID:12387629"
/translation="MKLELLLAFKYLIPKRKRLSSSIVSAFSMGIVALVVWLSVVFMS
VIHGLQQRWVGDLASLHSSIRIEPSDKYYESYYYQIDSHAEASQYIYKTIGEKLLCEQ
TDPYDPDVDFLLPEAFPDPEFSDNGEMIDPVRTANERMLSLFSSRKGSFVEFEEGMGH
VHMDRAFRGHKGEPRALSQYIAYSSDILYQQRMLPFEETDYSTEVLNRFNASSEGWLA
DFLVLQEKFRGMSVILPVVYRDQGYRVGDTASLSVFSVKKEGEVRFPLRVIGFYNPGV
SPFGGKTIFIDKELAASIRSESEGLGMHNGWQVFLPSVQDIPVMKQSIQKIFKESEVS
SYWEISSLYDYEFFKPILDQLQSDQVLFSIVSFIVLIVACSNIVTMSILLVNNKKKEI
GILKAMGVSSSRLQLVFGLCGACSGLVGALLGSILAALTLKNLGILTHWLSKLQGREA
FNPSFFGEQLPQDFHLPTVICLSLGALVLAAISGAIPAQHVARMQVSDILKSE"
misc_feature 173433..174863
/locus_tag="CTDLC_0151"
/note="ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms]; Region: SalY;
COG0577"
/db_xref="CDD:223650"
misc_feature 174441..174842
/locus_tag="CTDLC_0151"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:217187"
gene 174873..175550
/gene="ycfV"
/locus_tag="CTDLC_0152"
/db_xref="GeneID:12387630"
CDS 174873..175550
/gene="ycfV"
/locus_tag="CTDLC_0152"
/codon_start=1
/transl_table=11
/product="lipoprotein release ATP-binding protein"
/protein_id="YP_005812083.1"
/db_xref="GI:385244239"
/db_xref="GeneID:12387630"
/translation="MVILVEAKHISKVIQQQDVCIPILKDVSFQLHAGEVVAITGASG
SGKSSLLHLLGTLDQPSSGQILFFGKQVRREELPIFRNCRIGFIFQNFYLLEDDSVIN
NVLMPAQIARKDTGQKSKARERALALLESVGLVDRRDEKGSLLSGGEKQRVAIARALM
NDPEIVLADEPSGNLDHRTADTIHELLLALAEKHRGVLIVTHDRELAEKCHREEILRD
GTLMQRQ"
misc_feature 174882..175529
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:224059"
misc_feature 174885..175535
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="ATP-binding cassette domain of the transporters
involved in export of lipoprotein and macrolide, and cell
division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
/db_xref="CDD:213222"
misc_feature 174993..175016
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213222"
misc_feature order(175002..175007,175011..175019,175140..175142,
175377..175382,175476..175478)
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213222"
misc_feature 175131..175142
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="Q-loop/lid; other site"
/db_xref="CDD:213222"
misc_feature 175305..175334
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213222"
misc_feature 175365..175382
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="Walker B; other site"
/db_xref="CDD:213222"
misc_feature 175389..175400
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="D-loop; other site"
/db_xref="CDD:213222"
misc_feature 175464..175484
/gene="ycfV"
/locus_tag="CTDLC_0152"
/note="H-loop/switch region; other site"
/db_xref="CDD:213222"
gene complement(175701..178202)
/locus_tag="CTDLC_0153"
/db_xref="GeneID:12387631"
CDS complement(175701..178202)
/locus_tag="CTDLC_0153"
/codon_start=1
/transl_table=11
/product="MAC/perforin family protein"
/protein_id="YP_005812084.1"
/db_xref="GI:385244240"
/db_xref="GeneID:12387631"
/translation="MLFFKASSFHYRVSITVQPGEFLMTKPSFLYVIQPFSVFNPRLG
RFSTDSDTYIEEENRLASFIESLPLEIFDIPSFMETAISNSPYILSWETTKDGALFTI
LEPKLSACAATCLVAPSIQMKSDAELLEEIKQALLRSSHDGVKYRITRESFSPEKKTP
KVALVDDDIELIRNVDFLGRAVDIVKLDPINILNTVSEENILDYSFTRETAQLSADGR
FGIPPGTKLFPKPSFDVEISTSIFEETTSFTRSFSASVTFSVPDLAATMPLQSPPMVE
NGQKEICVIQKHLFPSYSPKLVDIVKRYKREAKILINKLAFGMLWRHRAKSQILTEGS
VRLDLQGFTESKYNYQIQVGSHTIAAVLIDMDISKIQSKSEQAYAIRKIKSGFQRSLD
DYHIYQIERKQTFSFSPKHRSLSSTSHSEDSDLDLSEAAAFSGSLTCEFVKKSTQHAK
NTVTCSTAAHSLYTLKEDDSSNPSEKRLDSCFRNWIENKLSANSPDSWSAFIQKFGTH
YIASATFGGIGFQVLKLSFEQVEDLHSKKISLETAAANSLLKGSVSSSTESGYSSYSS
TSSSHTVFLGGTVLPSVHDERLDFKDWSESVHLEPVPIQVSLQPITNLLVPLHFPNIG
AAELSNKRESLQQAIRVYLKEHKVDEQGERTTFTSGIDNPSSWFTLEAAHSPLIVSTP
YIASWSTLPYLFPTLRERSSATPIVFYFCVDNNEHASQKILNQSYCFLGSLPIRQKIF
GSEFASFPYLSFYGNAKEAYFDNTYYPTRCGWIVEKLNTTQDQFLRDGDEVRLKHVSS
GKYLATTPLKDTHGTLTRTTNCEDAIFIIKKSSGY"
misc_feature complement(176271..176852)
/locus_tag="CTDLC_0153"
/note="membrane-attack complex / perforin; Region: MACPF;
smart00457"
/db_xref="CDD:197737"
misc_feature complement(<175776..175859)
/locus_tag="CTDLC_0153"
/note="Domain in ryanodine and inositol trisphosphate
receptors and protein O-mannosyltransferases; Region: MIR;
smart00472"
/db_xref="CDD:197746"
gene complement(178319..179470)
/locus_tag="CTDLC_0154"
/db_xref="GeneID:12387632"
CDS complement(178319..179470)
/locus_tag="CTDLC_0154"
/codon_start=1
/transl_table=11
/product="Phosphatidylcholine-hydrolyzing phospholipase D
(PLD) family"
/protein_id="YP_005812085.1"
/db_xref="GI:385244241"
/db_xref="GeneID:12387632"
/translation="MLPHQQNSSSERARHHESRSHRHSSSSRHHVTRSQSSALPQLQE
RPVPHPLAERELIIFHSVHQQQNNNPLRMICDTIRQAQRGIFMRIYTISSDDIIQSLI
QTSHHVPVEVKYHCGESLPVACQNSRVVLRLTNGRTLQHKKTMLADFQTVVTGSANYT
DLSLNHDANVTACIESSELHDAVFSERPQLVHVGPQLLNYIPIQRLIPNAASKMILNA
INQATDSIFVLMYIFLSPEFFLALAQAMRRGVRVKVIIDNHSKQDTCKLLSKLGIQLP
IYERKTEGVLHTKICCIDNKTLIFGSANWSGAGMIKNFEDLFILRPITETQLQAFMDV
WSLLETNSSYLSPESVLTAPTPSSRPTQQDTDSDDEQPSTSQQDIRMRK"
misc_feature complement(<178988..179272)
/locus_tag="CTDLC_0154"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
misc_feature complement(178922..>179098)
/locus_tag="CTDLC_0154"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(178997..178999,179003..179005,
179042..179044,179048..179050))
/locus_tag="CTDLC_0154"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature complement(179048..179050)
/locus_tag="CTDLC_0154"
/note="catalytic site [active]"
/db_xref="CDD:197200"
misc_feature complement(178457..178867)
/locus_tag="CTDLC_0154"
/note="Catalytic domain of EDTA-resistant nuclease Nuc,
vertebrate phospholipase D6, and similar proteins; Region:
PLDc_Nuc_like; cd09116"
/db_xref="CDD:197215"
misc_feature complement(178466..178828)
/locus_tag="CTDLC_0154"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(178526..178528,178559..178561,
178565..178567,178604..178606,178610..178612))
/locus_tag="CTDLC_0154"
/note="putative active site [active]"
/db_xref="CDD:197215"
misc_feature complement(178610..178612)
/locus_tag="CTDLC_0154"
/note="catalytic site [active]"
/db_xref="CDD:197215"
gene complement(179439..180380)
/locus_tag="CTDLC_0155"
/db_xref="GeneID:12387633"
CDS complement(179439..180380)
/locus_tag="CTDLC_0155"
/codon_start=1
/transl_table=11
/product="Phosphatidylcholine-hydrolyzing phospholipase D
(PLD) family"
/protein_id="YP_005812086.1"
/db_xref="GI:385244242"
/db_xref="GeneID:12387633"
/translation="MLAGSKRKHKTPEDTSSSSSKRARSSSSQVVPRLLQHHELIQLY
SAHQQRNNEPVKMICETILQAKRSVLLKIFNIGSPRILAALAEASNRAPVSVHYQMGP
FSKHCTEGNVQFRPRRGCSLLHRKTLLIDNNIVVTGTANYTEASLEKDVNLTAKIFSE
HLYRWAFRHDRGEVRVGSQQVSYYSLSQIRRDLCVKAILEANGIVLRERTCEGILHTK
VCCIDSSTLIIGSVNWSRGGLTLNLEEFLIINPLTETQLECYNELWAHIETNSRLMTK
ELIQLHEKRKKSITDPKQISSSTQDEENASTSAEQQF"
misc_feature complement(179925..180215)
/locus_tag="CTDLC_0155"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
misc_feature complement(179883..180209)
/locus_tag="CTDLC_0155"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(179925..179927,179958..179960,
179964..179966,180003..180005,180009..180011))
/locus_tag="CTDLC_0155"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature complement(180009..180011)
/locus_tag="CTDLC_0155"
/note="catalytic site [active]"
/db_xref="CDD:197200"
misc_feature complement(179580..>179876)
/locus_tag="CTDLC_0155"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
misc_feature complement(179589..>179876)
/locus_tag="CTDLC_0155"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(179649..179651,179682..179684,
179688..179690,179727..179729,179733..179735))
/locus_tag="CTDLC_0155"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature complement(179733..179735)
/locus_tag="CTDLC_0155"
/note="catalytic site [active]"
/db_xref="CDD:197200"
gene complement(180737..181951)
/locus_tag="CTDLC_0157"
/db_xref="GeneID:12387634"
CDS complement(180737..181951)
/locus_tag="CTDLC_0157"
/codon_start=1
/transl_table=11
/product="Phosphatidylcholine-hydrolyzing phospholipase D
(PLD) family"
/protein_id="YP_005812087.1"
/db_xref="GI:385244243"
/db_xref="GeneID:12387634"
/translation="MSVQGSSSLKYSDLFKPPEPTSSTDSSKEPPKESAWKVVSHSRG
RRRARSNPSPHTSQNTPSPKDSSLVARTDKAATDIFNSAKHKAIETTKRSDQQSRSLH
ILHLLAENPEPIVFHSAHQTNHNDPQRMLCDAILQANRIITMRIFNIGSPEIIRALIR
AVRRNIPVVVSAWNFPNLSNWDRESELCVELRGNPQICLHKKTTLIDNQLTIIGTANY
TKSSFFKDINLTALIQNPALYSLILSDTRGSVSIGSQTISYYPLPFPQSNTKILPIIQ
EIQKAQRTIKIAMNIFSHTEIFLALEQARLRGVTITIVINKKESAHTLDILHRISALL
LLKSVTTVDSLHAKICLIDNQTLIFGSPNWTYHGMHKNLEDLLIVTPLTPKQIHSIQE
IWAFLLKNSSPV"
misc_feature complement(181226..181567)
/locus_tag="CTDLC_0157"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
misc_feature complement(181226..181561)
/locus_tag="CTDLC_0157"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(181268..181270,181301..181303,
181307..181309,181346..181348,181352..181354))
/locus_tag="CTDLC_0157"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature complement(181352..181354)
/locus_tag="CTDLC_0157"
/note="catalytic site [active]"
/db_xref="CDD:197200"
misc_feature complement(180761..181174)
/locus_tag="CTDLC_0157"
/note="Catalytic domain of EDTA-resistant nuclease Nuc,
vertebrate phospholipase D6, and similar proteins; Region:
PLDc_Nuc_like; cd09116"
/db_xref="CDD:197215"
misc_feature complement(180770..181132)
/locus_tag="CTDLC_0157"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(180830..180832,180863..180865,
180869..180871,180908..180910,180914..180916))
/locus_tag="CTDLC_0157"
/note="putative active site [active]"
/db_xref="CDD:197215"
misc_feature complement(180914..180916)
/locus_tag="CTDLC_0157"
/note="catalytic site [active]"
/db_xref="CDD:197215"
gene complement(182075..182791)
/locus_tag="CTDLC_0158"
/db_xref="GeneID:12387635"
CDS complement(182075..182791)
/locus_tag="CTDLC_0158"
/codon_start=1
/transl_table=11
/product="Phosphatidylcholine-hydrolyzing phospholipase D
(PLD) family"
/protein_id="YP_005812088.1"
/db_xref="GI:385244244"
/db_xref="GeneID:12387635"
/translation="MQLQKFKATNQARLHCKNIVVDGSLVITGSANFSDAAFSRDTNL
VAIIRNPSLGQLVVSQQSGWITGGSQQIEYCSLYCHNHQGVDKVVKAVQSAVKTIRVA
MLVLSHKEVLHALHQAAQRGVEVTVLVNPHNKAIPFYALQDLNSKVKLRDVVVEENAL
LHCKVGLIDTNLLITGSANWTVRGLQYNIEDLIFIHQPTPSQLSAFFNLWEQAMSLSR
EVTAKKIKKSARAQHKYDDE"
misc_feature complement(182633..>182773)
/locus_tag="CTDLC_0158"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(182639..>182767)
/locus_tag="CTDLC_0158"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
misc_feature complement(order(182663..182665,182696..182698,
182702..182704,182741..182743,182747..182749))
/locus_tag="CTDLC_0158"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature complement(182747..182749)
/locus_tag="CTDLC_0158"
/note="catalytic site [active]"
/db_xref="CDD:197200"
misc_feature complement(182150..182569)
/locus_tag="CTDLC_0158"
/note="Catalytic domain of EDTA-resistant nuclease Nuc,
vertebrate phospholipase D6, and similar proteins; Region:
PLDc_Nuc_like; cd09116"
/db_xref="CDD:197215"
misc_feature complement(182162..182530)
/locus_tag="CTDLC_0158"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(182222..182224,182255..182257,
182261..182263,182300..182302,182306..182308))
/locus_tag="CTDLC_0158"
/note="putative active site [active]"
/db_xref="CDD:197215"
misc_feature complement(182306..182308)
/locus_tag="CTDLC_0158"
/note="catalytic site [active]"
/db_xref="CDD:197215"
gene complement(182734..183666)
/locus_tag="CTDLC_0159"
/db_xref="GeneID:12387636"
CDS complement(182734..183666)
/locus_tag="CTDLC_0159"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812089.1"
/db_xref="GI:385244245"
/db_xref="GeneID:12387636"
/translation="MCFLLFKNKSTFSLKRLDVEKKASFFSMSVNRNHNNFPPYGENE
TPPPESQPTDGPEDPSMQGAYYIAPEDLPQHQLAAAVEGLHIGSTLNPTAPEFTSGAV
SHHFETFTSSFPPAPQQPWAVLDPYATYPYGVQSLYLEYAPPAVVQEPYTTTGQQGLS
SYPEAAPQPPALQQPESLPQATARDRGDLEKEANNTNSFATQAIETTPSNISPCFNLH
GEAIQLFSTESGPSPLRSILQAIKQAKYHIYIQIYRFTSEEIAAALLERANNGVRIHY
NINTSTAQKPLFDILTCNCRNSKLLTRRDYTVKI"
misc_feature complement(<182845..182994)
/locus_tag="CTDLC_0159"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
gene complement(183812..184315)
/locus_tag="CTDLC_0160"
/db_xref="GeneID:12387637"
CDS complement(183812..184315)
/locus_tag="CTDLC_0160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812090.1"
/db_xref="GI:385244246"
/db_xref="GeneID:12387637"
/translation="MTEQPHRLSEEARSIANEAKERLLKLNDKPELSRPYLVKGFLSK
ISRGISSKEAVSKFSTAIVTSLLGYLWNHILQNKERILSADARDLEARSVLLDTKEIL
ALCKYFAINRCTWLSSSSTQEEENLICQDIAKEMFSISLHALVEQQWIREYDLSVNNG
SSYKLFF"
gene complement(184312..185052)
/locus_tag="CTDLC_0161"
/db_xref="GeneID:12387638"
CDS complement(184312..185052)
/locus_tag="CTDLC_0161"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812091.1"
/db_xref="GI:385244247"
/db_xref="GeneID:12387638"
/translation="MARKPLVDRDHFPKYRTICDTIMEGNLENIRFSDKTGESVYSSK
ELPSVLFKRIGQKNAKQRVLNNIAVNACLAKIGVDGLQVLSASTYKDFLIEDKPFGKG
ALDTLIAYRLNPSLFDRAVKSLCKLFSFYHCPDLFVKSSDLLKDSPHSKLLLGFKENN
ESLAAESATLQPILYLTGIQCILEEPTPDLEAKLSSLFPYHKTLIQQELSKLRVSKPK
VEASKEPTPPSTYDERLNSSPYRNGKFL"
gene complement(185200..185439)
/locus_tag="CTDLC_0162"
/db_xref="GeneID:12387639"
CDS complement(185200..185439)
/locus_tag="CTDLC_0162"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812092.1"
/db_xref="GI:385244248"
/db_xref="GeneID:12387639"
/translation="MIVTFDKYLAPELGPDPLERLGNVLLYPIVRGFGSLVSVKTLGE
KRFLCFSDKVVSLCKRILCVVCNILAAPITCLLAL"
gene 185672..187318
/locus_tag="CTDLC_0163"
/db_xref="GeneID:12387640"
CDS 185672..187318
/locus_tag="CTDLC_0163"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812093.1"
/db_xref="GI:385244249"
/db_xref="GeneID:12387640"
/translation="MFVSFDKSRCRADVPDFFERTGNFLLHCVARGINVLYRVKQISN
YPSCYFSHKEISCCRRIANIVICILTGPLMLLATVLGLLAYRFSSTYQTSLQERFRYK
YEQKQALDEYRDREEKVITLQKFCRGFLVRNHLLNQETLTTCKQWGQKLLEGEKFPRV
PEGRSLVYISKQFPSLVAKHVGAQDARSRWHHIFSMRKALAYLDIKRIRAPRARVYQN
FIFEEKLPVSRISVDSMCLYKENPQAFDEAIKELLFLFKEVHFRDFVVETESPTDDFP
LAVKVHNYWVCPRYDNLPLFIQEGKDGSPEGRIGLVDLETFSWSPHPYPVEELAVMFP
MHKELLMTEAKKLQIPFSTKEVERSVEKGLAFFEHMLGHQDFCSQKSVTPLRNCAPYI
HLEVWRFSLKIFDILKAAIQLNGALNVLLSPDIRERLSAISDKQWLAISSQVTSSLLE
QVSTNIYQSHTEEAKRVNSSGTFIMCRSPIFRKSIFIKNLPQFLNKKLQLLPEEKAIS
EALASLCLRAVMEELVATGNIYSYDSMDDFFEGQYCRIRY"
gene 187371..187631
/locus_tag="CTDLC_0164"
/db_xref="GeneID:12387641"
CDS 187371..187631
/locus_tag="CTDLC_0164"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812094.1"
/db_xref="GI:385244250"
/db_xref="GeneID:12387641"
/translation="MTISSTTTPSKSSSCFQFRETNKEPVKTYRVTSIALVAIGLLLL
MISSLLLLLRVPMTMPCLVISSGCMSCGVVLVGSKIEGICFG"
gene 188105..188551
/locus_tag="CTDLC_0165"
/db_xref="GeneID:12387642"
CDS 188105..188551
/locus_tag="CTDLC_0165"
/codon_start=1
/transl_table=11
/product="Adherence factor"
/protein_id="YP_005812095.1"
/db_xref="GI:385244251"
/db_xref="GeneID:12387642"
/translation="MFQPETVPSNRSTETTPQNIEVYNDRNFTNHTTEDVIRIGERLQ
RQFYNMTEESRVPFTTSPSHHTGNWKTAFLYNLSQVVAHIFPSTVQPIRVKPTRIPPS
PTPPPEGTTTAETSTSENKVTTISKEQEVTTKPLLVRERRSLLHSQ"
gene 188548..190467
/locus_tag="CTDLC_0166"
/db_xref="GeneID:12387643"
CDS 188548..190467
/locus_tag="CTDLC_0166"
/codon_start=1
/transl_table=11
/product="Adherence factor"
/protein_id="YP_005812096.1"
/db_xref="GI:385244252"
/db_xref="GeneID:12387643"
/translation="MNVRTYSVQRGGVKTISASAVPPTAAVLSRKKRAIEEKKEEASS
GKIENLDASKYDLTPKNIEEKLGITPEQKSTVKDLLNKLKKVISAYNSMPDKNSEAGQ
NSLIQQGKYVDAIQKKLPASSQAQPKQAKAKEQKAEEKPKTTPIEGVLETIKTEFKGH
RVPVEKIIHGIWIAGAPPDGIEDYMRVFLDTYEGFDFYFWVDENAYAAAKFSSILKKV
AFDAAIQDLRSATDESTKAFVKDYDELKQKYEKKVAETTSQAEKDQYLKDLKDLLEKF
TKISDEIRGKFDRLFLKNVIVAQNGFFNFCLLKGLGNINDETRAEYLEKELKLPTEEI
EQYKKLKETNKEKIAAIVKQLNEKLGSDRVKIKDIKELQSMKQARNVYNYEQEMFLRW
NYAAATDQIRMYMLEELGGLYTDLDMMPSYSQEVLELIKKHSDGNRMFEDMSSRRAIS
DAVLKMAVGKATTVSMEEVAKDIDVSRLTEEDKTKLNALFKDLEPFAKPDSKGAEAEG
GEGAKGMKKSFFQPIDLNIVRNTMPILRRYHHYPELGWFIRGLNGLMVSHKGSTAVSA
VIVGQQAAYQELAALRQDVLSGEFFHSLENLTHRNHKERIGNHLVANYLAKSLFFDYC
QDSVMPEAVSTLGIR"
misc_feature 188704..188892
/locus_tag="CTDLC_0166"
/note="TcdB toxin N-terminal helical domain; Region:
TcdB_N; pfam12918"
/db_xref="CDD:221852"
misc_feature 189040..190461
/locus_tag="CTDLC_0166"
/note="TcdA/TcdB catalytic glycosyltransferase domain;
Region: TcdA_TcdB; pfam12919"
/db_xref="CDD:221853"
misc_feature 189535..189828
/locus_tag="CTDLC_0166"
/note="Glycosyltransferase sugar-binding region containing
DXD motif; Region: Gly_transf_sug; pfam04488"
/db_xref="CDD:218109"
gene 190523..191854
/locus_tag="CTDLC_0167"
/db_xref="GeneID:12387644"
CDS 190523..191854
/locus_tag="CTDLC_0167"
/codon_start=1
/transl_table=11
/product="Adherence factor"
/protein_id="YP_005812097.1"
/db_xref="GI:385244253"
/db_xref="GeneID:12387644"
/translation="MYAGHIKGAMEHRHWHEFPHLLSKFDITVHARTIKYFAFKGSLA
TNDTILFRSYLEPEILDIYNSTPVDLHVWSQYDQIRIHKATLKLEGFQVYNVTTATDA
LNRQLMYAQNFVNIRGRDLSIKPFYIRTGSGIGAIQLVFKDLFVNDLSDITDRTFEKE
AKPLLAKKPHSLIDPTYKEFLKFFLGETSCDLTQYIQEFGDTSHIIKMIRDPKTHELQ
EPAHLPVNPVVLTYTIDPKEEEVRQDKLLFLDKLMKEYRFPQPTQAESYYYIDPVSGD
LYITRVALTRPTEKAFLLRLAQFKSRWLDFQNIFISGVRASTGTSKSLEASGTGVMFI
GPEIRHIELDFFRHIAGRALPERVSSRSSVVFPTNDQVVLYNPALAMKFYTYTAFMLW
NLRDRARGESKRAKAYDNYLLEACMSLDTAGKPHWKIPEGFLQFAFASVLG"
misc_feature <190523..191833
/locus_tag="CTDLC_0167"
/note="Protein of unknown function (DUF3491); Region:
DUF3491; pfam11996"
/db_xref="CDD:221366"
gene 191920..192222
/locus_tag="CTDLC_0168"
/db_xref="GeneID:12387645"
CDS 191920..192222
/locus_tag="CTDLC_0168"
/codon_start=1
/transl_table=11
/product="Adherence factor"
/protein_id="YP_005812098.1"
/db_xref="GI:385244254"
/db_xref="GeneID:12387645"
/translation="MSLITTQTGYFARQNRRGGFQVFYSIYGLEGKVQPHQAPGDMLC
DITEDVVLTVKDVDESDYQQKRIYVVLDLATEEERRLRADKNVILIPRGENSKKRK"
gene 192278..192562
/gene="trpR"
/locus_tag="CTDLC_0169"
/db_xref="GeneID:12387646"
CDS 192278..192562
/gene="trpR"
/locus_tag="CTDLC_0169"
/codon_start=1
/transl_table=11
/product="Trp operon repressor"
/protein_id="YP_005812099.1"
/db_xref="GI:385244255"
/db_xref="GeneID:12387646"
/translation="MKNQEESGWQAFLTLCSKMQKEKFLQDLFSLFLSFSERKDVASR
YHIIRALLEGELTQREIAEKYGVSIAQITRGSNALKGLDPQFKEFLQKEI"
misc_feature 192278..192559
/gene="trpR"
/locus_tag="CTDLC_0169"
/note="trp operon repressor, proteobacterial; Region:
TrpR; TIGR01321"
/db_xref="CDD:130388"
gene 192911..194089
/gene="trpB"
/locus_tag="CTDLC_0170"
/db_xref="GeneID:12387647"
CDS 192911..194089
/gene="trpB"
/locus_tag="CTDLC_0170"
/EC_number="4.2.1.20"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit beta"
/protein_id="YP_005812100.1"
/db_xref="GI:385244256"
/db_xref="GeneID:12387647"
/translation="MFKHKHPFGGAFLPEELLAPIQNLKAEWEILKTQQSFLSELDCI
LKNYAGRQTPLTEVKNFARAIDGPRVFLKREDLLHTGAHKLNNALGQCLLAKYLGKTR
VVAETGAGQHGVATATACAYLGLDCVVYMGAKDVERQKPNVEKMRFLGAEVVSVTKGS
CGLKDAVNQALQDWATTHSFTHYCLGSALGPLPYPDIVRFFQSVISAEVKEQIHAVAG
RDPDILIACIGGGSNAIGFFHHFIPNPKVQLIGVEGGGLGISSGKHAARFATGRPGVF
HGFYSYLLQDDDGQVLQTHSISAGLDYPSVGPDHAEMHESGRAFYTLATDEEALRAFF
LLTRNEGIIPALESSHALAHLVSIAPSLPKEQIVIVNLSGRGDKDLPQIIRRNRGIYE
"
misc_feature 192929..194071
/gene="trpB"
/locus_tag="CTDLC_0170"
/note="tryptophan synthase, beta subunit; Region: trpB;
TIGR00263"
/db_xref="CDD:232897"
misc_feature 192968..194059
/gene="trpB"
/locus_tag="CTDLC_0170"
/note="Tryptophan synthase-beta: Trptophan synthase is a
bifunctional enzyme that catalyses the last two steps in
the biosynthesis of L-tryptophan via its alpha and beta
reactions. In the alpha reaction, indole 3-glycerol
phosphate is cleaved reversibly to...; Region:
Trp-synth_B; cd06446"
/db_xref="CDD:107207"
misc_feature order(193157..193162,193241..193243,193469..193471,
193595..193609,193949..193951,194027..194029)
/gene="trpB"
/locus_tag="CTDLC_0170"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107207"
misc_feature 193160..193162
/gene="trpB"
/locus_tag="CTDLC_0170"
/note="catalytic residue [active]"
/db_xref="CDD:107207"
gene 194037..194843
/gene="trpA"
/locus_tag="CTDLC_0171"
/db_xref="GeneID:12387648"
CDS 194037..194843
/gene="trpA"
/locus_tag="CTDLC_0171"
/EC_number="4.2.1.20"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit alpha"
/protein_id="YP_005812101.1"
/db_xref="GI:385244257"
/db_xref="GeneID:12387648"
/translation="MIRIFHKSSAETEEFMSKLTQVFKQTKLCIGYLTAGDGGTSYTI
EAAKALIQGGVDILELGFPFSDPVADNPEIQVSHDRALAENLTSETLLEIVEGIRAFN
QEVPLILYSYYNPLLQRDLDYLRRLKDAGINGVCVIDLPAPLSHGEKSPFFEDLLAVG
LDPILLISAGTTPERMSLIQEYARGFLYYIPCQATRDSEVGIKEEFRKVREHFDLPIV
DRRDICDKKEAAHVLNYSDGFIVKTAFVHQTTMDSSVETLTALAQTVIPG"
misc_feature 194082..194822
/gene="trpA"
/locus_tag="CTDLC_0171"
/note="tryptophan synthase alpha subunit; Provisional;
Region: trpA; CHL00200"
/db_xref="CDD:133642"
misc_feature 194118..194825
/gene="trpA"
/locus_tag="CTDLC_0171"
/note="Ttryptophan synthase (TRPS) alpha subunit (TSA).
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2
beta subunits) that catalyzes the last two steps of
L-tryptophan biosynthesis. Alpha and beta subunit catalyze
two distinct reactions which are both...; Region:
Tryptophan_synthase_alpha; cd04724"
/db_xref="CDD:73386"
misc_feature order(194211..194213,194244..194246,194256..194258,
194598..194600,194697..194702,194760..194765)
/gene="trpA"
/locus_tag="CTDLC_0171"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73386"
misc_feature order(194211..194213,194244..194246,194370..194372)
/gene="trpA"
/locus_tag="CTDLC_0171"
/note="active site"
/db_xref="CDD:73386"
misc_feature order(194211..194213,194244..194246,194370..194372)
/gene="trpA"
/locus_tag="CTDLC_0171"
/note="catalytic residues [active]"
/db_xref="CDD:73386"
misc_feature order(194226..194237,194241..194243,194250..194252,
194259..194264,194376..194378,194382..194384,
194448..194453,194457..194459,194478..194480,
194538..194540,194544..194552,194559..194561)
/gene="trpA"
/locus_tag="CTDLC_0171"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73386"
gene complement(195090..195590)
/locus_tag="CTDLC_0172"
/db_xref="GeneID:12387649"
CDS complement(195090..195590)
/locus_tag="CTDLC_0172"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812102.1"
/db_xref="GI:385244258"
/db_xref="GeneID:12387649"
/translation="MRKMNYHNTFVKTSMFFLAKRLVQLNKNPFLLKKFSETTVLFIF
ERQLKMWEGYSIDENNYISDYNMEFGRPLLQKLANPVCKALLQKQLEAEQAMTLSNQV
TVGDIVLMRSPIFEKSVLLETLINEIIYQESLFLFKKPENVQCPKMSFEHGAHEILLK
IFLTVS"
gene complement(195609..195779)
/locus_tag="CTDLC_1172"
/db_xref="GeneID:12387650"
CDS complement(195609..195779)
/locus_tag="CTDLC_1172"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812103.1"
/db_xref="GI:385244259"
/db_xref="GeneID:12387650"
/translation="MLRLFCLGYFPQLFEKQKNLLEDLIYNKLFVEKTVVMGEGACVV
NLAIGGGETILL"
gene complement(195847..196137)
/locus_tag="CTDLC_0173"
/db_xref="GeneID:12387651"
CDS complement(195847..196137)
/locus_tag="CTDLC_0173"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812104.1"
/db_xref="GI:385244260"
/db_xref="GeneID:12387651"
/translation="MISPDTMKICREICDAILKRDFATFEIERTYKNGSIVYTSRQCP
GVEIREIGDQAKAILHNQEELRQAVATLGLKHLIIPPLSIYKHSLLYKRLVI"
gene complement(196206..196661)
/locus_tag="CTDLC_0174"
/db_xref="GeneID:12387652"
CDS complement(196206..196661)
/locus_tag="CTDLC_0174"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812105.1"
/db_xref="GI:385244261"
/db_xref="GeneID:12387652"
/translation="MLIFFDKSQSGALPDRLERAGNLLRFAVNRGMASQIKVTSAQSG
HIFFSEKMISVCKRIACIVLCIVLAPFCLLGALIGTIAYKLSNSYQNALYLFREHRNM
CSEVEKAMKGKNKQITRLQRNFRKVLEKKHIADVKKQKEYQEMCRQSES"
gene 196856..198445
/gene="oppA"
/locus_tag="CTDLC_0175"
/db_xref="GeneID:12387653"
CDS 196856..198445
/gene="oppA"
/locus_tag="CTDLC_0175"
/note="OppA"
/codon_start=1
/transl_table=11
/product="Oligopeptide-binding protein"
/protein_id="YP_005812106.1"
/db_xref="GI:385244262"
/db_xref="GeneID:12387653"
/translation="MHHRKFLAVSIAFVSLAFGLTSCYHKKEEPKDVLRIAICHDPMS
LDPRQVFLSKDVSIVKALYEGLVREKEAAFQLALAERYHQSDDGCVYTFFLKNTFWSN
GDVVTAYDFEESIKQIYFREIDNPSLRSLALIKNSHAVLTGALPVEDLGVRALNAKTL
EIVLENPFPYFLEILAHPVFYPVHTSLREYYKDKRNKRVFPIISNGPFAIQCYEPQRY
LLINKNPLYHAKHDVLLNSVCLQIVPDIHTAMQLFQKNHIDLVGLPWSSSFSLEEQRN
LPREKLFDYPVLSCSVLFCNIHQTPLNNPSLRTALSLAINRETLLKLAGKGCSATSFV
HPQLSQIPATTLSQDERIALAKGYLTEALKTLSQEDLEKITLIYPIESVCLRAVVQEI
RQQLFDVLGFKISTLGLEYHCFLDKRSRGEFSLATGNWIADYHQASAFLSVLGNGTRY
KDFQLINWQNQKYTNIVAQLLIQESSDLQLMAEQLLLKESPLIPLYHLDYVYAKQPRV
SDLQTSSRGEIDLKRVSLAEG"
misc_feature 196856..198379
/gene="oppA"
/locus_tag="CTDLC_0175"
/note="ABC-type oligopeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
OppA; COG4166"
/db_xref="CDD:226636"
misc_feature 196949..198421
/gene="oppA"
/locus_tag="CTDLC_0175"
/note="The substrate-binding component of an ABC-type
oligopetide import system contains the type 2 periplasmic
binding fold; Region: PBP2_OppA; cd08504"
/db_xref="CDD:173869"
misc_feature order(197021..197023,197639..197641,197714..197716,
198086..198088,198134..198136,198140..198154,
198347..198349)
/gene="oppA"
/locus_tag="CTDLC_0175"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:173869"
gene complement(198472..198879)
/gene="dsbB"
/locus_tag="CTDLC_0176"
/db_xref="GeneID:12387654"
CDS complement(198472..198879)
/gene="dsbB"
/locus_tag="CTDLC_0176"
/codon_start=1
/transl_table=11
/product="disulfide bond formation protein B"
/protein_id="YP_005812107.1"
/db_xref="GI:385244263"
/db_xref="GeneID:12387654"
/translation="MIKHLRSYCLYLAWLFSCIGTLMSVYYSYILNVEPCLLCYYQRI
CLFPLVVILGIAAYREDISIKIYTLPLALVGFGIAIYQVCLQEIPGMTLDICGKVSCS
TKLFLLGFITMPMASAAAFCAIACLLVLATKSK"
misc_feature complement(198535..198879)
/gene="dsbB"
/locus_tag="CTDLC_0176"
/note="putative disulfide oxidoreductase; Provisional;
Region: PRK00611"
/db_xref="CDD:100616"
gene complement(198876..199724)
/gene="dsbA"
/locus_tag="CTDLC_0177"
/db_xref="GeneID:12387655"
CDS complement(198876..199724)
/gene="dsbA"
/locus_tag="CTDLC_0177"
/note="Thiol:disulfide interchange protein"
/codon_start=1
/transl_table=11
/product="DsbA family thiol:disulfide interchange protein"
/protein_id="YP_005812108.1"
/db_xref="GI:385244264"
/db_xref="GeneID:12387655"
/translation="MSFLTHKKSERKEKVFFNKEASFISARKRFRFFYFCLISILNGR
MDTRTPLRKKILIISTALGFVLCVGLMIHTKRSIMPPKTHIPTTAKYFPTIGDPYAPI
NITVFEEPSCSACEEFSSEVFPLIKKHFVDTGEASLTLVPVCFIRGSMPAAQALLCVY
HHDPKRPDPEAYMEYFHRILTYKKTKGSHWATPEVLAKLAEKIPTHSGREINLKGLIQ
CINSQRFTEQLKKNNIYGSQIMGGQLATPTAVVGDYLIEDPTFDEIERVITQLRHLQA
IEEEVR"
misc_feature complement(198906..>199466)
/gene="dsbA"
/locus_tag="CTDLC_0177"
/note="Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones]; Region: DsbG;
COG1651"
/db_xref="CDD:31837"
misc_feature complement(198921..199448)
/gene="dsbA"
/locus_tag="CTDLC_0177"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
gene 199738..200952
/locus_tag="CTDLC_0178"
/db_xref="GeneID:12387656"
CDS 199738..200952
/locus_tag="CTDLC_0178"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812109.1"
/db_xref="GI:385244265"
/db_xref="GeneID:12387656"
/translation="MEKDFLENVYRHFRYRFFKLSILPALLGLWLFFTPNILNYLDYS
VILSDKICGVLLILLSALSFYNPVVLQLGIFIGLWVSFFSCSSDLLPLVFAHDSLLGF
ATLAIIFLLPNRPEDLEVGPTIPETCHYNPSSGGKRAAVLIFAFVGWLQSRYLTSAAL
NIADADTSCSLFFSSTLMVIYSMLIVLSLTGGERRWHTQPKVVFITAILLFIAIGLTL
AAILLSQLFLTNYEGVCLTVAPVFSLAFFYDEIRATWNYLSQNYSNRKQLAITAFYGS
EYYKESLFWEERSVLPFSQACKQAFAGLSFPLNLIFACIFSIFFVQLNANLSIPDTCR
FFVNSACWFILVLSIFSFAESLRHLRWLSLLFAAGIILSPVIFHLPLEASTLLSIIVS
GIAFIILSIGRL"
misc_feature 200125..200562
/locus_tag="CTDLC_0178"
/note="Vitamin K epoxide reductase (VKOR) family; Region:
VKOR; cl01729"
/db_xref="CDD:242670"
misc_feature order(200245..200247,200263..200265,200431..200433,
200440..200442)
/locus_tag="CTDLC_0178"
/note="putative active site [active]"
/db_xref="CDD:240598"
misc_feature 200431..200442
/locus_tag="CTDLC_0178"
/note="redox center [active]"
/db_xref="CDD:240598"
gene complement(200954..201613)
/locus_tag="CTDLC_0179"
/db_xref="GeneID:12387657"
CDS complement(200954..201613)
/locus_tag="CTDLC_0179"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812110.1"
/db_xref="GI:385244266"
/db_xref="GeneID:12387657"
/translation="MTIPPLKLVQAARPLYDQQLHKLSREEKLSLQGEIRTHEVRSVP
LVFFAMLAAVGAFLALCIGGVLCCIDNVVFLSEIFLPFILPGILSLLLIALLLRLAWK
EQKLAAQKQQRIAASCYFESLALCRTYKSGAPSVKGLVNFIQSEILPSGFSKRFKFAV
LTQAKPSLLTKKIQLTKTPFDETIETAFSHIREGLYLSESEQRDHDKKLDNEANTSPK
G"
gene complement(201610..202302)
/gene="tauB"
/locus_tag="CTDLC_0180"
/db_xref="GeneID:12387658"
CDS complement(201610..202302)
/gene="tauB"
/locus_tag="CTDLC_0180"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_005812111.1"
/db_xref="GI:385244267"
/db_xref="GeneID:12387658"
/translation="MLDVKSLYYSHASHSVFEDASASFASGQISMVLGASGSGKTTLF
RIIAGLLSCSLGEILWKGQPIQQEQIAYMQQKEALLPWRTVRKNILLLTELGSRKQKT
TIEEECFYNVVHSFGLSSLLDRFPDELSGGQRQRVVFAMQSLSPKPILLLDEPFTSLD
PITKEILYQDVKRLAKEEGKTIILASHDVQDCLGVGEAFFAIQNQKLHSIALNKEQGI
AGLLQQMKDHLV"
misc_feature complement(201616..202302)
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:224041"
misc_feature complement(201703..202269)
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(202180..202203)
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(201742..201744,201841..201846,
202078..202080,202177..202185,202189..202194))
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature complement(202078..202089)
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature complement(201889..201918)
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(201841..201858)
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature complement(201823..201834)
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(201718..201720,201739..201756))
/gene="tauB"
/locus_tag="CTDLC_0180"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene complement(202340..202413)
/locus_tag="CTDLC_r035"
/db_xref="GeneID:12387659"
tRNA complement(202340..202413)
/locus_tag="CTDLC_r035"
/product="tRNA-Ile"
/db_xref="GeneID:12387659"
gene complement(202419..202491)
/locus_tag="CTDLC_r034"
/db_xref="GeneID:12387660"
tRNA complement(202419..202491)
/locus_tag="CTDLC_r034"
/product="tRNA-Ala"
/db_xref="GeneID:12387660"
gene complement(202610..203320)
/locus_tag="CTDLC_0181"
/db_xref="GeneID:12387661"
CDS complement(202610..203320)
/locus_tag="CTDLC_0181"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812112.1"
/db_xref="GI:385244268"
/db_xref="GeneID:12387661"
/translation="MLSKFCKLSLSAILLINTLAPSETFSEEGTSGFLGRMKSWILKD
KTILSTTEESQTSAIEKVSDLLSWKRYDYTQESGFAIQFPESPEHSEQVIEVPQSDLA
IRYDTYVAETPSDSTVYVVSIWEYPEKIDISRPELNLQEGFAGMLYALPESQVLYLKA
TALQGHKALEFWIACDDVYFRGMLVSVNHTLYQVFMVYKGRSPEILDKEYSTFIQSFK
VTKVRNSKKMDIRKRVSL"
gene 203652..204452
/gene="kdsB"
/locus_tag="CTDLC_0182"
/db_xref="GeneID:12387662"
CDS 203652..204452
/gene="kdsB"
/locus_tag="CTDLC_0182"
/EC_number="2.7.7.38"
/codon_start=1
/transl_table=11
/product="3-deoxy-manno-octulosonate cytidylyltransferase"
/protein_id="YP_005812113.1"
/db_xref="GI:385244269"
/db_xref="GeneID:12387662"
/translation="MLLRWDVINGGAVFAFLTSKKVGILPSRWGSSRFPGKPLAKILG
KTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVV
SRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHK
VKCVFDKNGKALYFSRSAIPHNFKHPTPIYLHIGVYAFRKAFLSEYVKIPPSSLSLAE
DLEQLRVLEIGRSIYVHVVQNATGPSVDYPEDITKVEQYLLCLSKASF"
misc_feature 203709..204422
/gene="kdsB"
/locus_tag="CTDLC_0182"
/note="CMP-KDO synthetase catalyzes the activation of KDO
which is an essential component of the lipopolysaccharide;
Region: CMP-KDO-Synthetase; cd02517"
/db_xref="CDD:133010"
misc_feature order(203727..203735,203850..203852,203931..203933,
203997..203999,204003..204005)
/gene="kdsB"
/locus_tag="CTDLC_0182"
/note="Ligand binding site; other site"
/db_xref="CDD:133010"
misc_feature order(204072..204074,204123..204125,204141..204149,
204165..204170,204174..204194,204213..204215,
204288..204293,204300..204308,204327..204338)
/gene="kdsB"
/locus_tag="CTDLC_0182"
/note="oligomer interface; other site"
/db_xref="CDD:133010"
gene 204428..206047
/gene="pyrG"
/locus_tag="CTDLC_0183"
/db_xref="GeneID:12387663"
CDS 204428..206047
/gene="pyrG"
/locus_tag="CTDLC_0183"
/EC_number="6.3.4.2"
/codon_start=1
/transl_table=11
/product="CTP synthase"
/protein_id="YP_005812114.1"
/db_xref="GI:385244270"
/db_xref="GeneID:12387663"
/translation="MSFKSIFLTGGVVSSLGKGLTAASLALLLERQDLKVAMLKLDPY
LNVDPGTMNPYEHGEVYVTDDGVETDLDLGHYHRFSSVQLSKYSTATSGQIYTKVLTK
ERNGEFLGSTVQVIPHVTNEIINVIQSCADHHKPDILIVEIGGTIGDIESLPFLEAVR
QFRCEHPQDCLSIHMTYVPYLRAAKEIKTKPTQHSVQNLRSIGISPDVILCRSEAPLS
TEVKRKISLFCNVPEHAVFNAIDLERSIYEMPLLLAKENISDFLLNKLGFSPKPLDLS
DWQDLVEALCDKERQHVRIGLVGKYLEHKDAYKSVFESLFHASVPANCSLELVPIAPE
SEDLLEQLSQCDGCLIPGGFGTRSWEGKISAARYCRERNIPCFGICLGMQALVVEYAR
NVLDKPLANSMEINPETPDPVVCMMEGQDSVVKGGTMRLGAYPCRIAPGSLASAAYKT
DLVQERHRHRYEVNPSYIERLEEHGLKIAGVCPLGELCEIVEIPNHRWMLGVQFHPEF
LSKLAKPHPLFIEFIRAAKAYSLEKANHEHR"
misc_feature 204437..206026
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="CTP synthetase; Validated; Region: pyrG; PRK05380"
/db_xref="CDD:235437"
misc_feature 204437..205201
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="CTP synthetase (CTPs) is a two-domain protein,
which consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent...; Region: CTGs;
cd03113"
/db_xref="CDD:239387"
misc_feature order(204467..204469,204476..204487,204545..204547,
204551..204559,204635..204637,204641..204643,
204650..204655,204851..204853,204857..204859)
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="Catalytic site [active]"
/db_xref="CDD:239387"
misc_feature order(204470..204484,204545..204547,204860..204862,
204989..204997,205097..205099)
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="active site"
/db_xref="CDD:239387"
misc_feature order(204545..204559,204857..204862,204878..204880,
204989..204997,205097..205099)
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="UTP binding site [chemical binding]; other site"
/db_xref="CDD:239387"
misc_feature 205304..205996
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cytidine Triphosphate Synthetase; Region:
GATase1_CTP_Synthase; cd01746"
/db_xref="CDD:153217"
misc_feature order(205478..205492,205565..205570,205577..205579,
205637..205639,205799..205810,205940..205942,
205946..205948)
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="active site"
/db_xref="CDD:153217"
misc_feature order(205484..205486,205568..205570)
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="putative oxyanion hole; other site"
/db_xref="CDD:153217"
misc_feature order(205565..205567,205940..205942,205946..205948)
/gene="pyrG"
/locus_tag="CTDLC_0183"
/note="catalytic triad [active]"
/db_xref="CDD:153217"
gene 206034..206480
/gene="yqgF"
/locus_tag="CTDLC_0184"
/db_xref="GeneID:12387664"
CDS 206034..206480
/gene="yqgF"
/locus_tag="CTDLC_0184"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812115.1"
/db_xref="GI:385244271"
/db_xref="GeneID:12387664"
/translation="MNIAKQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSL
TLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWD
ERLSSAQAERMLKSDCGLNRKQRKNPSDSLAATLILSSFLDSRKLY"
misc_feature 206055..206474
/gene="yqgF"
/locus_tag="CTDLC_0184"
/note="Predicted endonuclease involved in recombination
(possible Holliday junction resolvase in Mycoplasmas and
B. subtilis) [DNA replication, recombination, and repair];
Region: COG0816"
/db_xref="CDD:223886"
gene 206597..208120
/gene="zwf"
/locus_tag="CTDLC_0185"
/db_xref="GeneID:12387665"
CDS 206597..208120
/gene="zwf"
/locus_tag="CTDLC_0185"
/EC_number="1.1.1.49"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate 1-dehydrogenase"
/protein_id="YP_005812116.1"
/db_xref="GI:385244272"
/db_xref="GeneID:12387665"
/translation="MEEIKDFGPTLPACPPCIVVIFGATGDLTSRKLFPALYNLTKEG
RLSENFVCVGFARRPKSHEQFREEMKLAVQHFSHSSEIDIRVWESLENRIFYHQANFS
DAEGYSVLKAYLEQLDQQYGTQGNRLFYLSTPPDYFQEIIRNLNRHQLFYHEQGAQQP
WSRLIIEKPFGVNLETARELQQCIDANIDEESVYRIDHYLGKETVQNILTIRFANTLF
ESCWNSQYIDHVQISVSESIGIGSRGNFFEKSGMLRDMVQNHLTQLLCLLTMEPPSEF
FSEEIKKEKIKILKKILPIREEDAVRGQYGEGIVQDVSVLGYREEENVDPNSSVETYV
ALKLFIDNPRWKGVPFYLQAGKRLPKRTTDIAVIFKKSSYNLFNAENCPLCPLENDLL
IIRIQPDEGVALQFNCKVPGTNKLVRPVKMDFRYDSYFNTVTPEAYERLLCDCILGDR
TLFTSNEEVLASWELFSPLLEKWSQVRPIFPNYMAGSLRPQEADELLSRDGKAWRPY"
misc_feature 206639..208111
/gene="zwf"
/locus_tag="CTDLC_0185"
/note="glucose-6-phosphate 1-dehydrogenase; Validated;
Region: PRK05722"
/db_xref="CDD:235579"
misc_feature 206654..207217
/gene="zwf"
/locus_tag="CTDLC_0185"
/note="Glucose-6-phosphate dehydrogenase, NAD binding
domain; Region: G6PD_N; pfam00479"
/db_xref="CDD:215937"
misc_feature 207221..208111
/gene="zwf"
/locus_tag="CTDLC_0185"
/note="Glucose-6-phosphate dehydrogenase, C-terminal
domain; Region: G6PD_C; pfam02781"
/db_xref="CDD:217228"
gene 208127..208915
/gene="devB"
/locus_tag="CTDLC_0186"
/db_xref="GeneID:12387666"
CDS 208127..208915
/gene="devB"
/locus_tag="CTDLC_0186"
/EC_number="3.1.1.31"
/codon_start=1
/transl_table=11
/product="6-phosphogluconolactonase"
/protein_id="YP_005812117.1"
/db_xref="GI:385244273"
/db_xref="GeneID:12387666"
/translation="MQEVVYMATLISLNDANRMLIADSQEEFLQIACYDWISTANKAI
HKRGAFYVALSGGKTPLQIFQEIVKKRAAISDCSKIVVFWGDERANEDVEAGSNYLKA
MDILKGLRIPEDQIFRMDTADPKGDEAYEALIQKYVPDAIFDMVMLGVGEDGHTLSLF
PETHALEEKERFVVFNEVPQLHTRRMTLTFPIVRQARHLVAYVQGENKQDLFHKLVHP
LGRDTFPIERVGTPLNPVQWVLSSDSCRKTDLADIPADCKLEMF"
misc_feature 208202..208846
/gene="devB"
/locus_tag="CTDLC_0186"
/note="6PGL: 6-Phosphogluconolactonase (6PGL) subfamily;
6PGL catalyzes the second step of the oxidative phase of
the pentose phosphate pathway, the hydrolyzation of
6-phosphoglucono-1,5-lactone (delta form) to
6-phosphogluconate. 6PGL is thought to guard...; Region:
6PGL; cd01400"
/db_xref="CDD:73166"
misc_feature order(208298..208303,208388..208390,208589..208591,
208679..208681,208748..208750)
/gene="devB"
/locus_tag="CTDLC_0186"
/note="putative active site [active]"
/db_xref="CDD:73166"
gene complement(208912..209784)
/gene="dnaX_1"
/locus_tag="CTDLC_0187"
/db_xref="GeneID:12387667"
CDS complement(208912..209784)
/gene="dnaX_1"
/locus_tag="CTDLC_0187"
/EC_number="2.7.7.7"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit gamma/tau"
/protein_id="YP_005812118.1"
/db_xref="GI:385244274"
/db_xref="GeneID:12387667"
/translation="MESAAWEALIQRVRDQKLPSAIILHGQDLSNLSARAYEYASLII
KETLPEAAYKLANKLHPDMHEYSPQGKGRLHTIETPRAIRKDIWIHPYESPYKIYIIY
EADRITLDAISAFLKLLEDPPQYGMFILVSALPQRLPPTIRSRCVSFRIPMEEKTLVS
KKDIAFLIGLAQGKESVTRIGSQVKGTADEDKQVLRDKTKAMLTVLLQLFRDRFLLAK
KVPVSLLAYPDLLNEIKTMPVYPLEEVLSIITRAVQALDSYSSAPSCLEWICLQLWSF
KNRQQMAIRNRRRS"
misc_feature complement(208915..209784)
/gene="dnaX_1"
/locus_tag="CTDLC_0187"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK05917"
/db_xref="CDD:102059"
misc_feature complement(<209350..>209490)
/gene="dnaX_1"
/locus_tag="CTDLC_0187"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK08485"
/db_xref="CDD:236274"
gene complement(209798..210409)
/gene="tmk"
/locus_tag="CTDLC_0188"
/db_xref="GeneID:12387668"
CDS complement(209798..210409)
/gene="tmk"
/locus_tag="CTDLC_0188"
/EC_number="2.7.4.9"
/codon_start=1
/transl_table=11
/product="thymidylate kinase"
/protein_id="YP_005812119.1"
/db_xref="GI:385244275"
/db_xref="GeneID:12387668"
/translation="MFIVVEGGEGAGKTQFIQALSKRLIEEGREIVTTREPGGCSLGD
SVRGLLLDPEQKISPYAELLLFLAARAQHIQEKIIPALKSGKTVISDRFHDSTIVYQG
IAGGLGESFVTNLCYHVVGDKPFLPDITFLLDIPAREGLLRKARQKHLDKFEQKPQIF
HRSVREGFLALAEKAPDRYKVLDALLPTEASVDQALLQIRALI"
misc_feature complement(209801..210409)
/gene="tmk"
/locus_tag="CTDLC_0188"
/note="thymidylate kinase; Validated; Region: tmk;
PRK00698"
/db_xref="CDD:234814"
misc_feature complement(209807..210409)
/gene="tmk"
/locus_tag="CTDLC_0188"
/note="Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor. TMPK
represents the rate-limiting step...; Region: TMPK;
cd01672"
/db_xref="CDD:238835"
misc_feature complement(order(209969..209971,210110..210112,
210134..210139,210200..210202,210212..210214,
210368..210370))
/gene="tmk"
/locus_tag="CTDLC_0188"
/note="TMP-binding site; other site"
/db_xref="CDD:238835"
misc_feature complement(order(209858..209860,209981..209983,
210365..210367))
/gene="tmk"
/locus_tag="CTDLC_0188"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238835"
gene complement(210411..212921)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/db_xref="GeneID:12387669"
CDS complement(210411..212921)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/EC_number="5.99.1.3"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_005812120.1"
/db_xref="GI:385244276"
/db_xref="GeneID:12387669"
/translation="MLNKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPS
QRRILYAMKQLNLTPGVKHRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPL
VDGQGNFGSIDGDPAAAMRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFP
SKFPNLLCNGSSGIAVGMATNIPPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFP
TGGIICGTEGIRSTYYTGRGKLRLRARMHVEENSDKQRENIILTEMPYNVNKSRLIEQ
IAELINEKTLTGISDVRDESDKDGIRVVLELKKGESSEVVINRLYKFTDVQVTFGANM
LALDKNLPRTMNIHRMISAWIRHRMDVIQRRTRYELNKAEARAHILEGFLKALSCMDE
VVKTIRESSNKEHAKQQLVELFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEK
ITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVII
TISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQ
CYWLKVWRLPEGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFLATKKGVV
KKVSLDAFGSPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVR
PMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSV
GVRSIVINQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNL
REGDTLVAMEKLSINTESVETEENLAASVQSGQDTIEE"
misc_feature complement(210489..212900)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="DNA gyrase, A subunit; Region: gyrA; TIGR01063"
/db_xref="CDD:233256"
misc_feature complement(211497..212834)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes...;
Region: TOP4c; cd00187"
/db_xref="CDD:238111"
misc_feature complement(order(212445..212447,212454..212525,
212529..212585,212589..212738,212751..212834))
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="CAP-like domain; other site"
/db_xref="CDD:238111"
misc_feature complement(212556..212558)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="active site"
/db_xref="CDD:238111"
misc_feature complement(order(211608..211658,211698..211703,
211734..211745,211752..211760))
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:238111"
misc_feature complement(211263..>211379)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature complement(211101..211256)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature complement(210951..211085)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature complement(210792..210938)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature complement(210639..210785)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature complement(210489..210632)
/gene="gyrA_1"
/locus_tag="CTDLC_0189"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
gene complement(212936..215350)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/db_xref="GeneID:12387670"
CDS complement(212936..215350)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/EC_number="5.99.1.3"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_005812121.1"
/db_xref="GI:385244277"
/db_xref="GeneID:12387670"
/translation="MDAQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYE
VVDNSIDEAMAGFCTEVVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVV
LTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLT
TLQVLGPTDKRGTEVLFYPDPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDT
GFDKVVFFYEGGIQSFVSYLNQNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYS
ELIYSYANNIPTRQGGTHLTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVA
IVSVKVPNPQFEGQTKQKLGNSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAA
QAREAAKRARELTLRKSALDSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRD
RRFQAILPIRGKILNVEKARLQKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIII
MTDADVDGSHIRTLLLTFFYRHMSALIENECVYIAQPPLYRVSKKKDFRYILSEKEMD
GYLLNLGTKESQIVFDDTLRDLRGEALETFVNLILEVESFIVSLEKKAIPFSEFLDMF
RDGAYPLYYYPPESGKQGGSYLYSHEEKEAAIAANEESASRILELYKGSVLEELQRDL
GDYGYDIRNYLHPKGSGITVSTEDPKISPYVCYTLKEVIDYLKGLGRKGIEIQRYKGL
GEMNADQLWDTTMNPEQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIESHALSIR
MNNLDI"
misc_feature complement(212939..215347)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:237860"
misc_feature complement(214925..215239)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature complement(order(214967..214978,215111..215116,
215120..215122,215126..215128,215132..215134,
215198..215200,215207..215209,215219..215221))
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(215207..215209)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(order(214970..214972,214976..214978,
215114..215116,215120..215122))
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature complement(214187..214666)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:238419"
misc_feature complement(214499..214501)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="anchoring element; other site"
/db_xref="CDD:238419"
misc_feature complement(order(214307..214309,214313..214318,
214325..214327))
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238419"
misc_feature complement(order(214301..214303,214307..214309))
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238419"
misc_feature complement(213716..214060)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature complement(order(213806..213808,213812..213814,
213818..213820,214028..214030,214037..214042))
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="active site"
/db_xref="CDD:173786"
misc_feature complement(order(213818..213820,214040..214042))
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature complement(212978..213169)
/gene="gyrB"
/locus_tag="CTDLC_0190"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(215353..215703)
/locus_tag="CTDLC_0191"
/db_xref="GeneID:12387671"
CDS complement(215353..215703)
/locus_tag="CTDLC_0191"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812122.1"
/db_xref="GI:385244278"
/db_xref="GeneID:12387671"
/translation="MSFYPQNLPSFRRRKPSRTDSPIKHAKHFLRDHLSHLRKILAGK
PQEVIEAWYEILGKKYNGMTQAIGLKDGILSIKVRNASLYAVLKQSSQKELISRIHSA
VPGAKVKEIRFLLG"
misc_feature complement(215365..215631)
/locus_tag="CTDLC_0191"
/note="Protein of unknown function (DUF721); Region:
DUF721; pfam05258"
/db_xref="CDD:218524"
gene complement(215850..216623)
/locus_tag="CTDLC_0192"
/db_xref="GeneID:12387672"
CDS complement(215850..216623)
/locus_tag="CTDLC_0192"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812123.1"
/db_xref="GI:385244279"
/db_xref="GeneID:12387672"
/translation="MFFSGSVETLPPSTCLISKKTRKEEFVRSVGQEASQNTLSWTIR
PRIPSIIQGSKEVSLALFVLGTVLAIVGACAAAVGGAFSVCLGVLFLGGVVLATGLLL
AVLEFCHIRSSMEKYVILTKQDLFKEPVIQEEQATPLIEEASYTCEPGIPLSGPEEVQ
QERPVILQKDLDLSHAPKYIAVGSHVVELVKAGKIGRNGERLLEEGIDTDQNFVRVWD
ELFILGQRGEMVRLDGFCCKVLPKKSKSESINNLVSNDC"
gene complement(216650..217768)
/gene="tgt"
/locus_tag="CTDLC_0193"
/db_xref="GeneID:12387673"
CDS complement(216650..217768)
/gene="tgt"
/locus_tag="CTDLC_0193"
/EC_number="2.4.2.29"
/codon_start=1
/transl_table=11
/product="queuine tRNA-ribosyltransferase"
/protein_id="YP_005812124.1"
/db_xref="GI:385244280"
/db_xref="GeneID:12387673"
/translation="MALRFEILHQSKKSRARVGRIETAHGYIDTPAFVPVATNGALKG
VLDHSNIPLMFCNTYHLIVHPGAEAIAAMGGLHQFIGRNAPIITDSGGFQIFSLAYGS
VAEEIKSCGKKKGGNTIIKVNDDGVHFKSYRDGRKLFLSPEISVQAQKDLGADIILPL
DELLPFHADPTYFHQSSQRTYVWEKRSLDYHLKNPGIQSMYGVIHGGTFPDQRKLGCK
FVEDLPFDGSAIGGSLGKNLQDIVEVVGVTAANLSAERPRHLLGIGDLPSIWATVGFG
IDSFDSSYPTKAARHGMILTSQGPLKINNQRYSSDLNPIEPGCSCLACSQGITRAYLR
HLFKVHEPNAGIWASIHNMHHMQKVMREIREGILNDRI"
misc_feature complement(216653..217768)
/gene="tgt"
/locus_tag="CTDLC_0193"
/note="queuine tRNA-ribosyltransferase; Provisional;
Region: PRK01008"
/db_xref="CDD:134464"
misc_feature complement(216653..217756)
/gene="tgt"
/locus_tag="CTDLC_0193"
/note="Queuine/archaeosine tRNA-ribosyltransferase
[Translation, ribosomal structure and biogenesis]; Region:
Tgt; COG0343"
/db_xref="CDD:223420"
gene complement(217895..219367)
/gene="mgtE"
/locus_tag="CTDLC_0194"
/db_xref="GeneID:12387674"
CDS complement(217895..219367)
/gene="mgtE"
/locus_tag="CTDLC_0194"
/note="protein MgtE"
/codon_start=1
/transl_table=11
/product="Mg2+ transporter"
/protein_id="YP_005812125.1"
/db_xref="GI:385244281"
/db_xref="GeneID:12387674"
/translation="MKEQNRNEEKLDVALTSGNLMDSKTSHLDDELCFKLEEAFDTLT
AGEHSQDLTSIVSVYNPIDLAYAVSCLPSDSRSILYKNLDSIASKIAFIINTDSASRW
AIFRNLSDGEICALIEQMPPDEAIWVLDDIPDRRYRRILDLIDVKKALKIRDLQKHGR
NTAGRLMTNEFFAFLMETTVKEVATCIRNNPGIDLTRLVFVLDFKGELQGFVTDRSLI
IASPEMPLKQIMRPIEHKVLADTTREEVVDLVERYKVAVLPVVDEENFLIGAITYEDV
VETIEDIADETIARMAGTTEDVGYHDCHVVQRFLLRAPWLLITLCAGLVSASVMAYFQ
KIAPTLLAMVIFFIPLVNGLSGNVGVQCSTILVRSMATGTLSFGRRRETILKEMSIGL
LTGVALGILCGLVVCCMGCLGLGLFATGGVQLGVTVSVGILGASLTATTLGVLSPFFF
AKIGVDPALASGPIVTALNDIMSMVIFLLITGTLNVLFFK"
misc_feature complement(217901..219283)
/gene="mgtE"
/locus_tag="CTDLC_0194"
/note="Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism]; Region: MgtE;
COG2239"
/db_xref="CDD:225148"
misc_feature complement(218894..219193)
/gene="mgtE"
/locus_tag="CTDLC_0194"
/note="MgtE intracellular N domain; Region: MgtE_N;
pfam03448"
/db_xref="CDD:146204"
misc_feature complement(218528..218851)
/gene="mgtE"
/locus_tag="CTDLC_0194"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domain in the
magnesium transporter, MgtE. MgtE and its homologs are
found in eubacteria, archaebacteria, and eukaryota.
Members of this family transport Mg2+ or other...; Region:
CBS_pair_Mg_transporter; cd04606"
/db_xref="CDD:239979"
misc_feature complement(217925..218329)
/gene="mgtE"
/locus_tag="CTDLC_0194"
/note="Divalent cation transporter; Region: MgtE;
pfam01769"
/db_xref="CDD:110745"
gene complement(219746..220837)
/locus_tag="CTDLC_0195"
/db_xref="GeneID:12387675"
CDS complement(219746..220837)
/locus_tag="CTDLC_0195"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812126.1"
/db_xref="GI:385244282"
/db_xref="GeneID:12387675"
/translation="MVSMSLNLPPAEVRLRPVTAKSFPNSSAWRATQKRITGCSLNAS
SYRPSSARVISFVVGVLVVLGWICFRIAYLANSRVLTFPKMFAIAILPFILFGGGLAI
LFRIAGKVDVLYGKKIQPFISRQWERVILCEKEGEFIRPIQEPDMYMDVSLLDRTGSG
IAPVYTYPPMDARTVICVVTSILLPIFSIVRMLYNIFRFFIVPFYILFQMVRQNYQTD
IPKEERFVCSDIVREMTRSLLQAVKAPFYGAVCYLANLYGLLNPLSGRVVLASLERDW
NNDVIRSRGVWGIFCEKNYMFEGGGTRSGLGQNAWYLLGCFQPVQLFLLKDGVIISGA
RPSIQSFPESKEYLASFLYGAVPGRLAGF"
gene 221043..221381
/locus_tag="CTDLC_0196"
/db_xref="GeneID:12387676"
CDS 221043..221381
/locus_tag="CTDLC_0196"
/codon_start=1
/transl_table=11
/product="Putative transport protein"
/protein_id="YP_005812127.1"
/db_xref="GI:385244283"
/db_xref="GeneID:12387676"
/translation="MDFKTFMATTVNPNYSLPFCEKMVSSATLAAHSFFNHIKLLIPL
LVGYFCILLGALILTGVITTIPSIAASYFLSLGVTLVIVGAGLCAAFKRPLFSVTQSK
ASTLLHISCD"
gene 221448..222473
/gene="gcp_1"
/locus_tag="CTDLC_0197"
/db_xref="GeneID:12387677"
CDS 221448..222473
/gene="gcp_1"
/locus_tag="CTDLC_0197"
/EC_number="3.4.24.57"
/codon_start=1
/transl_table=11
/product="O-sialoglycoprotein endopeptidase"
/protein_id="YP_005812128.1"
/db_xref="GI:385244284"
/db_xref="GeneID:12387677"
/translation="MFAMLTLGLESSCDETSCSLVQNGKILANKIASQDIHASYGGVI
PELASRAHLQTFPELLTAATQSAGVSLEDIELISVANTPGLIGALSIGVNFAKGLASG
LKRPLIGVNHVEAHLYAACMEAPATQFPALGLAISGAHTSLFLMPDATTFLLIGKTRD
DAIGETFDKVARFLGLPYPGGQKLEELAREGDADAFAFSPARVSGYDFSFSGLKTAVL
YALKGNNSSAKAPFPEVSETQKRNIAASFQKAVFMTIAQKLPDIVKTFSCESLIVGGG
VANNSYFRRLLNQICSLPIYFPSSQLCSDNAAMIAGLGERLFCNRTHVSKEVIPCARY
QWESACS"
misc_feature 221457..222470
/gene="gcp_1"
/locus_tag="CTDLC_0197"
/note="UGMP family protein; Validated; Region: PRK09604"
/db_xref="CDD:181984"
misc_feature 221463..>221780
/gene="gcp_1"
/locus_tag="CTDLC_0197"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature <222192..222440
/gene="gcp_1"
/locus_tag="CTDLC_0197"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 222437..223993
/gene="oppA"
/locus_tag="CTDLC_0198"
/db_xref="GeneID:12387678"
CDS 222437..223993
/gene="oppA"
/locus_tag="CTDLC_0198"
/note="OppA"
/codon_start=1
/transl_table=11
/product="Oligopeptide-binding protein"
/protein_id="YP_005812129.1"
/db_xref="GI:385244285"
/db_xref="GeneID:12387678"
/translation="MRKISVGICLLLALATSGCSKSSSNATHRSPATHTVAVSVKDDP
RTFDPREVRLLSDINLIHHLYEGLVQETPSGEVFPALAESFFLSEDKKTYTFNLKKAF
WSNGDLITAHDFVRSWNDVLQNRVASIYSFAFLPIDVNKDSGFFAKDDHTLVINLLTP
TPHFLKLLTLPVFYPVHSQHQIRKEEKSLPISTGAFFLKEKKDRRWLKLEKSPYYYNK
DQVAVQEICIHIIPDQQTASALFNQGKLDWQGLPWGHSIPQETLATTNKRRAPRSFDI
SGTSWLTFNTAKKPFSHSKLRQALSLVLNKEALASLAFVKPAKHLLPAHLHTYPEQPS
YKQQEAITLAKSLLEEALTELNMTIEDLEKYPLTFSATSTMNSQIAQMLRDQWRRSLG
ITFPICGKEYALLQNDLIGNTFFMSIGGWFADFSDPLAFLSIFSSKGVKPYALQDPQF
DQLILSIETEKNPQKRSALISEASLYIERQNVIEPLYHDVFHYTTNNKLSFVRLHPSG
LVDMRYAKNS"
misc_feature 222437..223984
/gene="oppA"
/locus_tag="CTDLC_0198"
/note="ABC-type oligopeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
OppA; COG4166"
/db_xref="CDD:226636"
misc_feature 222539..223981
/gene="oppA"
/locus_tag="CTDLC_0198"
/note="The substrate-binding component of an ABC-type
oligopetide import system contains the type 2 periplasmic
binding fold; Region: PBP2_OppA; cd08504"
/db_xref="CDD:173869"
misc_feature order(222608..222610,223184..223186,223262..223264,
223640..223642,223688..223690,223694..223708,
223901..223903)
/gene="oppA"
/locus_tag="CTDLC_0198"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:173869"
gene 224152..225093
/gene="oppB"
/locus_tag="CTDLC_0199"
/db_xref="GeneID:12387679"
CDS 224152..225093
/gene="oppB"
/locus_tag="CTDLC_0199"
/note="OppB"
/codon_start=1
/transl_table=11
/product="Oligopeptide transport system permease protein"
/protein_id="YP_005812130.1"
/db_xref="GI:385244286"
/db_xref="GeneID:12387679"
/translation="MLSYIKRRLLFNLLSLWVVVTLTFFIIKTIPGDPFNDENGNILS
SETLALLKNRYGLDKPLFTQYLIYLKCLLTLDFGESLIYKDRTVISIIAAALPSSAIL
GLESLCLSLFGGITLGILAAFYKKSCGRTIFFSSVIQISVPAFVIGAFLQYVFAIKYS
CLPIACWGNFSHTLLPSIALAITPMAFITQLTCASVSANLKKDYVLLAYAKGLSPFKV
LIKHILPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPITLG
LSVFYGAFFMLTSLCCDLLQAWIDPQIRYSYGKERSK"
misc_feature 224152..225072
/gene="oppB"
/locus_tag="CTDLC_0199"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:223674"
misc_feature 224467..225021
/gene="oppB"
/locus_tag="CTDLC_0199"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(224485..224490,224497..224502,224515..224517,
224545..224556,224560..224589,224596..224601,
224605..224607,224698..224703,224707..224709,
224713..224715,224722..224727,224731..224733,
224743..224748,224755..224757,224806..224808,
224848..224853,224860..224862,224881..224892,
224899..224904,224929..224934,224971..224976,
224983..224988,224992..224997,225004..225009,
225016..225021)
/gene="oppB"
/locus_tag="CTDLC_0199"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(224563..224607,224881..224898)
/gene="oppB"
/locus_tag="CTDLC_0199"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(224605..224607,224683..224685,224899..224901,
224923..224925,224932..224934,224971..224973)
/gene="oppB"
/locus_tag="CTDLC_0199"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(224758..224796,224812..224817,224827..224829)
/gene="oppB"
/locus_tag="CTDLC_0199"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 225125..225970
/gene="oppC"
/locus_tag="CTDLC_0200"
/db_xref="GeneID:12387680"
CDS 225125..225970
/gene="oppC"
/locus_tag="CTDLC_0200"
/note="OppC"
/codon_start=1
/transl_table=11
/product="Oligopeptide transport system permease protein"
/protein_id="YP_005812131.1"
/db_xref="GI:385244287"
/db_xref="GeneID:12387680"
/translation="MFRSSSSHTWRYIRTNKMLVLGCLTLAVLVLAATFLPYLYPDYE
RTFPEHALQSPSKAFPFGTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTL
ALASGKKVADIMSRITEILFSIPRIPVIILLLVIFNHGILPLILAMTITGWIPIARII
YGQFLLLENKEFVLSARALQASTFHILRKHLLPNSLGPIISTLIFTIPNAVYTEAFIS
FLGLGIQPPYASLGTLVKEGIHSLAYHPWLFFIPSFFMIIVSVSFNCIGEGLRTKLLE
ENTLV"
misc_feature 225125..225946
/gene="oppC"
/locus_tag="CTDLC_0200"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:224094"
misc_feature 225356..225802
/gene="oppC"
/locus_tag="CTDLC_0200"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(225404..225409,225416..225421,225434..225436,
225464..225475,225479..225508,225515..225520,
225524..225526,225575..225580,225584..225586,
225590..225592,225599..225604,225608..225610,
225620..225625,225632..225634,225683..225685,
225725..225730,225737..225739,225758..225769,
225776..225781)
/gene="oppC"
/locus_tag="CTDLC_0200"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(225482..225526,225758..225775)
/gene="oppC"
/locus_tag="CTDLC_0200"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(225524..225526,225560..225562,225776..225778)
/gene="oppC"
/locus_tag="CTDLC_0200"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(225635..225673,225689..225694,225704..225706)
/gene="oppC"
/locus_tag="CTDLC_0200"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 225963..226796
/gene="oppD"
/locus_tag="CTDLC_0201"
/db_xref="GeneID:12387681"
CDS 225963..226796
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="OppD protein"
/codon_start=1
/transl_table=11
/product="Oligopeptide transport ATP-binding protein"
/protein_id="YP_005812132.1"
/db_xref="GI:385244288"
/db_xref="GeneID:12387681"
/translation="MSEDLLKIDNLVVSVKDSNQRLVNHLSLTIKRCQSMALVGENGS
GKTTVSKAVLGFLPDNCYIQSGRILYSSTDITRLSRRQLQTIRGKKIATIFQNAMGTL
TPSMRVGAQIVETLRHHFDMSKEEAFSKARELLESVHIESPDRCLQLYPFELSGGMCQ
RVSIAIALATNPELIIADEPSTALDSISQAQVLRVLTQIHQNHSTALLLITHNLALVS
ELCEEMAIIRYGEIVEQGPVQELLHSPSHPYTQQLIRAIPKIPSPSYLSPKEPLATTA
Y"
misc_feature 225975..226670
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 226026..226730
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="nickel import ATP-binding protein NikD; Region:
nickel_nikD; TIGR02770"
/db_xref="CDD:131817"
misc_feature 226080..226103
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(226089..226094,226098..226106,226248..226250,
226494..226499,226596..226598)
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 226239..226250
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 226422..226451
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 226482..226499
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 226506..226517
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 226584..226604
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 226659..>226742
/gene="oppD"
/locus_tag="CTDLC_0201"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:219806"
gene 226811..227554
/gene="oppF"
/locus_tag="CTDLC_0202"
/db_xref="GeneID:12387682"
CDS 226811..227554
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="OppF"
/codon_start=1
/transl_table=11
/product="Oligopeptide transport ATP-binding protein"
/protein_id="YP_005812133.1"
/db_xref="GI:385244289"
/db_xref="GeneID:12387682"
/translation="MSTLVSIKDLSLTIRKQPILRNVHLEICRGECLTIVGASGSGKT
SLALAILGLLPPDAQDSIDFHLPPKTPRTKAVQMIWQDVYSSLNPMMTVQEIIAEPLH
IMGGLSKSQQQEEIAHALKLVHLPKSFLSLRPNKLSGGQRQRVAIAKALVCKPELIIC
DEPLSALDTMNQKLILDLFQTIKNQYNNTFLFITHDMSAAYTLADKIAVMDRGYLVEI
ASKQEIFSSPKHIKTRELLDAIPAFTFSF"
misc_feature 226814..227551
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:224049"
misc_feature 226820..227467
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 226919..226942
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(226928..226933,226937..226945,227051..227053,
227291..227296,227393..227395)
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 227042..227053
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 227219..227248
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 227279..227296
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 227303..227314
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 227381..227401
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 227456..>227539
/gene="oppF"
/locus_tag="CTDLC_0202"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:244611"
gene 227768..228616
/locus_tag="CTDLC_0203"
/db_xref="GeneID:12387683"
CDS 227768..228616
/locus_tag="CTDLC_0203"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812134.1"
/db_xref="GI:385244290"
/db_xref="GeneID:12387683"
/translation="MHSYRVVDRRFLACYDQEIIDYSQIFRTGVTLTMEISHILEDLV
YDNGVLPREAIEAAIVKHHQITPYLLKILEEAIDHVSDIIDDDCYQGHLYAMYLLAQF
RETRALPLIIKLFSFEQDIPHAIAGDVLTEDLSRILASVCDDVALIQELIETPHVNPY
VQAAAISSLVALVGVHKLSRETAIRYFGELLNYRLEKKPSFAWDSLVASICALYPKEL
FYPISKAFSAGLIDTSFISMEDVETIIHEESIDSCLKEVLSSTDLINDTLEEMEKWLE
RFPFES"
misc_feature 227867..228613
/locus_tag="CTDLC_0203"
/note="Protein of unknown function (DUF1186); Region:
DUF1186; pfam06685"
/db_xref="CDD:148343"
gene 228646..230061
/gene="ybhI"
/locus_tag="CTDLC_0204"
/db_xref="GeneID:12387684"
CDS 228646..230061
/gene="ybhI"
/locus_tag="CTDLC_0204"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate/malate translocator"
/protein_id="YP_005812135.1"
/db_xref="GI:385244291"
/db_xref="GeneID:12387684"
/translation="MNKHKRFLSLVLLTFILLGIWFCPHSDLIDSKAWHLFAIFTTTI
IGIIVQPAPMGAIVIMGISLLLVTKTLTLDQALSGFHSPITWLVFLSFSIAKGVIKTG
LGERVAYFFVKILGKSPLGLSYGLVLTDFLLAPAIPSLTARAGGILFPVVMGLSESFG
SSVEKGTEKLLGSFLIKVAYQSSVITSAMFLTAMAGNPIISALASHSGVTLTWAIWAK
TAILPGIISLACMPFVLFKLFPPQITSCEEAVATAKTRLKEMGPLNQGERIILLIFSL
LISLWTFGDSIGISATTTTFIGLSLLILTNILDWQKDVLSNTTAWETFFWFGALIMMA
SFLSAFGFIHFVGDSVIGSVQGLSWKIGFPILFLIYFYSHYLFASNTAHIAAMYPIFL
TVSISLGANPMFAALALAFASNLFGGLTHYGSGPAPLYFGSHFVSVQEWWRSGFILSI
VNLTIWLGLGSWWWYCLGLIR"
misc_feature 228700..230052
/gene="ybhI"
/locus_tag="CTDLC_0204"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:223547"
misc_feature 228802..230037
/gene="ybhI"
/locus_tag="CTDLC_0204"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cd00625"
/db_xref="CDD:238344"
misc_feature order(228805..228846,228889..228942,229009..229059,
229063..229071,229081..229125,229138..229143,
229165..229185,229189..229233,229312..229356,
229447..229485,229507..229551,229600..229656,
229726..229764,229771..229779,229846..229854,
229870..229920,229993..230031)
/gene="ybhI"
/locus_tag="CTDLC_0204"
/note="transmembrane helices; other site"
/db_xref="CDD:238344"
gene 230063..231742
/gene="pfkA_1"
/locus_tag="CTDLC_0205"
/db_xref="GeneID:12387685"
CDS 230063..231742
/gene="pfkA_1"
/locus_tag="CTDLC_0205"
/EC_number="2.7.1.90"
/codon_start=1
/transl_table=11
/product="Pyrophosphate--fructose 6-phosphate
1-phosphotransferase"
/protein_id="YP_005812136.1"
/db_xref="GI:385244292"
/db_xref="GeneID:12387685"
/translation="MFEQKLMSSNKHASLCQKTPSLCRELQKAPALLLTEDIRFKALL
NERIDSVAELFPCTYNSPYYKFISKSDLSAETSPLKVGVMLSGGPAPGGHNVILGLLH
SIKKLHPNSQLLGFIRNGEGLLNNNTVEITDEFIEEFRNSGGFNCIGTGRTNIITEEN
KARCLQTANELDLDGLVIIGGDGSNTATAILAEYFAKHQAKTVLVGVPKTIDGDLQHL
FLDLTFGFDTATKFYSSIISNISRDALSCKGHYHFIKLMGRSSSHITLECALQTHPNI
ALIGEEIAEKSISLETLIHDICETIADRAAMGKYHGVILIPEGVIEFIPEIQSLVKEI
ESIPEQENLYQALSLSSQQLLCQFPEDICHQLLYNRDAHGNVYVSKISVDKLLIHLVR
QHLETHFRQVPFNAISHFLGYEGRSGTPTHFDNVYSYNLGYGAGVLVFNRCNGYLSTI
EGLTSPIEKWRLRALPIVRMLTTKQGKDSKHYPLIKKRLVDIASPVFNKFSLYRKIWA
LEDSYRFVGPLQIHSPEDAHSDDFPPLILFLNHNEWQKRCSICLEIPDQDY"
misc_feature 230081..231700
/gene="pfkA_1"
/locus_tag="CTDLC_0205"
/note="diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional; Region: PRK07085"
/db_xref="CDD:180830"
misc_feature order(230324..230326,230420..230422,230516..230518,
230606..230614,230618..230623,230690..230692,
230696..230698,230702..230704,230831..230839,
231014..231016,231299..231301,231308..231310)
/gene="pfkA_1"
/locus_tag="CTDLC_0205"
/note="active site"
/db_xref="CDD:29437"
misc_feature order(230324..230326,230420..230422,230516..230518,
230606..230614,230618..230623)
/gene="pfkA_1"
/locus_tag="CTDLC_0205"
/note="ADP/pyrophosphate binding site [chemical binding];
other site"
/db_xref="CDD:29437"
misc_feature order(230354..230356,230366..230368,230459..230461,
230474..230476,230483..230485,230726..230728,
230762..230764,230774..230776,230783..230785,
230870..230875,230879..230881,230987..230989,
231335..231340,231350..231352,231371..231373,
231416..231418,231566..231568)
/gene="pfkA_1"
/locus_tag="CTDLC_0205"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29437"
misc_feature order(230354..230356,230366..230368,230459..230464,
230471..230476,230783..230785,230879..230881,
230885..230887,230981..230983,230987..230995)
/gene="pfkA_1"
/locus_tag="CTDLC_0205"
/note="allosteric effector site; other site"
/db_xref="CDD:29437"
misc_feature order(230690..230692,230696..230698,230702..230704,
230810..230812,230831..230839,231014..231016,
231281..231283,231299..231301,231308..231310)
/gene="pfkA_1"
/locus_tag="CTDLC_0205"
/note="fructose-1,6-bisphosphate binding site; other site"
/db_xref="CDD:29437"
gene 231691..232599
/locus_tag="CTDLC_0206"
/db_xref="GeneID:12387686"
CDS 231691..232599
/locus_tag="CTDLC_0206"
/codon_start=1
/transl_table=11
/product="Alpha/beta hydrolase"
/protein_id="YP_005812137.1"
/db_xref="GI:385244293"
/db_xref="GeneID:12387686"
/translation="MAKTLFYLFRNPRSGLLTISMDITKELPFIMMQQPHYFPHSKKI
FEIPLLDNVTSLGVLHIPHSQEKTFPLVIVLHGLASSKIGTKRSYLHLANQLVQEGIG
VLRVDLPGHGDSEGFIHEFSLTDYIQASQKIIQFGLSLPQANHSVALFGSSLGGSLSL
LNLPYFPEIQHAAIWTPTIQGALWLEDTMQSMSPSLQLPPDNFSYQGIPLGKKFCSQF
IELDTVDALSKITQEVSILYLQGEDDAVVSLRHQALFAKTFTGKASYRIYPKMTHQLC
IYSEAFQDLVDWLKHQLLGTPWSYSL"
misc_feature 231850..232095
/locus_tag="CTDLC_0206"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
misc_feature 231904..232509
/locus_tag="CTDLC_0206"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene 232515..234227
/gene="pfkA_2"
/locus_tag="CTDLC_0207"
/db_xref="GeneID:12387687"
CDS 232515..234227
/gene="pfkA_2"
/locus_tag="CTDLC_0207"
/EC_number="2.7.1.90"
/codon_start=1
/transl_table=11
/product="Pyrophosphate--fructose 6-phosphate
1-phosphotransferase"
/protein_id="YP_005812138.1"
/db_xref="GI:385244294"
/db_xref="GeneID:12387687"
/translation="MHILRSFSRPCRLAKTSIIGHTMELLSVNKSYFELQRLHYRPDT
LSLLNSLCSMHIQEKPSSEPASDLLAKHIPHLCALPDLTLQKDAPSSSEPLRIGVLLS
GGQAPGGHNVVIGLFEGLRAFNKETKLFGFIKGPLGLIRGLYKDLDISVIYDYYNAGG
FDMLSSSREKIKTKEQKSAILATVKKMKLHGLLIVGGDNSNTDTAMLAEYFIEHNCPT
AVIGVPKTIDGDLKNAWIETPLGFHTSCRTYSEMIGNLEKDVLSTRKYHHFVKLMGEQ
ASHSTLECGLQTLPNITLIGEEVAVQHASLQSLSLSIAQGLIERFHRGKDYSTILIPE
GLIKQIPDTKRLIQELNTLIAEGQFSVHNLDQQLSPMAIETFSSLPENIRDQLLLDRD
SYGNIRVSKIAIEELLASLVSKEISKLEPTMSFSPVTHFLGYESRASFPSNFDSNYGL
ALGIAASLFLVRGKTGYMVTIGNLAEAYTEWTIAATPLYKMMHLEKRFNQETPVIKTD
SVSPDAPMAKYLHKMKKICLLEDSYRFPGPLQYFEEQALVDQRPLTLLWEKGKLSENN
ATKF"
misc_feature 232596..234212
/gene="pfkA_2"
/locus_tag="CTDLC_0207"
/note="diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional; Region: PRK07085"
/db_xref="CDD:180830"
misc_feature order(232824..232826,232920..232922,233016..233018,
233106..233114,233118..233123,233190..233192,
233196..233198,233202..233204,233331..233339,
233514..233516,233814..233816,233823..233825)
/gene="pfkA_2"
/locus_tag="CTDLC_0207"
/note="active site"
/db_xref="CDD:29437"
misc_feature order(232824..232826,232920..232922,233016..233018,
233106..233114,233118..233123)
/gene="pfkA_2"
/locus_tag="CTDLC_0207"
/note="ADP/pyrophosphate binding site [chemical binding];
other site"
/db_xref="CDD:29437"
misc_feature order(232854..232856,232866..232868,232959..232961,
232974..232976,232983..232985,233226..233228,
233262..233264,233274..233276,233283..233285,
233370..233375,233379..233381,233487..233489,
233850..233855,233865..233867,233886..233888,
233931..233933,234078..234080)
/gene="pfkA_2"
/locus_tag="CTDLC_0207"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29437"
misc_feature order(232854..232856,232866..232868,232959..232964,
232971..232976,233283..233285,233379..233381,
233385..233387,233481..233483,233487..233495)
/gene="pfkA_2"
/locus_tag="CTDLC_0207"
/note="allosteric effector site; other site"
/db_xref="CDD:29437"
misc_feature order(233190..233192,233196..233198,233202..233204,
233310..233312,233331..233339,233514..233516,
233796..233798,233814..233816,233823..233825)
/gene="pfkA_2"
/locus_tag="CTDLC_0207"
/note="fructose-1,6-bisphosphate binding site; other site"
/db_xref="CDD:29437"
gene complement(234282..234355)
/locus_tag="CTDLC_r033"
/db_xref="GeneID:12387688"
tRNA complement(234282..234355)
/locus_tag="CTDLC_r033"
/product="tRNA-Met"
/db_xref="GeneID:12387688"
gene complement(234374..234446)
/locus_tag="CTDLC_r032"
/db_xref="GeneID:12387689"
tRNA complement(234374..234446)
/locus_tag="CTDLC_r032"
/product="tRNA-Met"
/db_xref="GeneID:12387689"
gene complement(234473..235768)
/gene="gseA"
/locus_tag="CTDLC_0208"
/db_xref="GeneID:12387690"
CDS complement(234473..235768)
/gene="gseA"
/locus_tag="CTDLC_0208"
/EC_number="2.-.-.-"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_005812139.1"
/db_xref="GI:385244295"
/db_xref="GeneID:12387690"
/translation="MIRRWLTSRLYDAFLVCAFFVSAPRIFYKVFFHGKYIDSWKIRF
GVQKPFVKGEGPLVWFHGASVGEVSLLAPLLNRWREEFPEWRFVVTTCSEAGVHTARR
LYESLGATVFVLPLDLSCIIKSVVRKLAPDIVIFSEGDCWLHFLTESKRLGAKAFLIN
GKLSEHSCKRFSFLKRLGRNYFAPLDLLILQDELYKQRFMQIGISSDKIHVTGNMKTF
IESSLATNRRDFWRAKLQISSQDRLIVLGSMHPKDVEVWAEVVSHFHNSSTKILWVPR
HLEKLKEHAKLLEKAGILFGLWSQGASFRQYNSLIMDAMGVLKDIYSAADIAFVGGTF
DPSVGGHNLLEPLQKEVPLMFGPYIYSQSVLAEKLREKEAGLSVNKETLLDVVTDLLQ
NEKNRQAYIEKGKSFLKQEENSFQQTWEILKSQITCMKI"
misc_feature complement(234491..235744)
/gene="gseA"
/locus_tag="CTDLC_0208"
/note="3-deoxy-D-manno-octulosonic-acid transferase [Cell
envelope biogenesis, outer membrane]; Region: KdtA;
COG1519"
/db_xref="CDD:224436"
misc_feature complement(235109..235663)
/gene="gseA"
/locus_tag="CTDLC_0208"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:218074"
gene complement(235765..238224)
/gene="leuS"
/locus_tag="CTDLC_0209"
/db_xref="GeneID:12387691"
CDS complement(235765..238224)
/gene="leuS"
/locus_tag="CTDLC_0209"
/EC_number="6.1.1.4"
/codon_start=1
/transl_table=11
/product="leucyl-tRNA synthetase"
/protein_id="YP_005812140.1"
/db_xref="GI:385244296"
/db_xref="GeneID:12387691"
/translation="MRYDPGLIEEKWQKFWENEQVFKAEEDETKTKYYVLDMFPYPSG
AGLHVGHLIGYTATDIVARYKRAQGFSVLHPMGWDSFGLPAEQYAIRTGTHPRETTEK
NIANFKKQLTAMGFSYDESREFATSDPEYYKWTQKLFLILYEKGLAYMADMAVNYCPE
LGTVLSNEEIENGFSVDGGYPVERRMLRQWVLRITAFADQLLEGLDELDWPESVKQLQ
KNWIGKSSGASVNFATEHGVIEVFTTRPDTLIGVSFLALAPEHPLVDLLTSDEQKAVV
AQYIKETQSKSERDRISEMKTKSGVFTGSYAKHPVTHKLIPIWIADYVLIGFGSGAVM
GVPAHDERDLLFAEQFNLPVVSVLNKEGVCINSCCEGFHLDGLSGEEAKQYVINFLEE
NHLGAAKIAYKLRDWLFSRQRYWGEPIPIIHFEDGSCRPLRDYELPLLPPEIQDYRPE
GVGQGPLAKVREWVQVFDTETQRAGKRETHTMPQWAGSCWYYLRFCDAHNSAAPWAKE
KEQYWMPVDLYIGGAEHAVLHLLYARFWHQVFYEAGIVSTPEPFKKLVNQGLVLATSY
RIPGKGYIYPEIAKEENGKWVAPSGEELDVRQEKMSKSKLNGVDPQILIDEFGADAVR
MYAMFSGPLDKNKLWSNQGVAGCRRFLNRFYEMVSSDRVKEDNNFEGLSLAHKLVQRV
TDAIEKLSLNTIPSSFMEFINDFVKLAVYPKSAVEMAVRALAPIAPHISEELWVLLGN
SPGVQKSGWPSVLPEYLEGQTVTIVVQVNGKLRARLDIMKDASKEEVLALARESASKY
LEGCEVKKAIFVPARLVNFVV"
misc_feature complement(235768..238224)
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="leucyl-tRNA synthetase; Validated; Region: leuS;
PRK00390"
/db_xref="CDD:178996"
misc_feature complement(<237556..238131)
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="catalytic core domain of leucyl-tRNA synthetases;
Region: LeuRS_core; cd00812"
/db_xref="CDD:173906"
misc_feature complement(238072..238083)
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="HIGH motif; other site"
/db_xref="CDD:173906"
misc_feature complement(237052..237546)
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="Leucyl-tRNA synthetase, Domain 2; Region:
tRNA-synt_1_2; pfam13603"
/db_xref="CDD:205781"
misc_feature complement(236308..>236790)
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature complement(236410..236421)
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(236410..236421)
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
misc_feature complement(236011..236310)
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="Anticodon-binding domain of bacterial and
eukaryotic mitochondrial leucyl tRNA synthetases; Region:
Anticodon_Ia_Leu_BEm; cd07958"
/db_xref="CDD:153412"
misc_feature complement(order(236095..236097,236107..236109,
236116..236118,236125..236130,236137..236139,
236149..236151,236266..236268,236278..236280,
236287..236292,236299..236301))
/gene="leuS"
/locus_tag="CTDLC_0209"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153412"
gene 238238..239689
/gene="hemL"
/locus_tag="CTDLC_0210"
/db_xref="GeneID:12387692"
CDS 238238..239689
/gene="hemL"
/locus_tag="CTDLC_0210"
/EC_number="5.4.3.8"
/codon_start=1
/transl_table=11
/product="glutamate-1-semialdehyde 2,1-aminomutase"
/protein_id="YP_005812141.1"
/db_xref="GI:385244297"
/db_xref="GeneID:12387692"
/translation="MLFLRFSLLTTALHLERNKRQTYTMSEIEIKSSPVCESIIFFLM
RSWYTLPFPQSLQRSLLMSHLFSKACQYFPGGVNSPVRACRAVNITPPIVARASKEVF
VDSLDKTFIDFCGSWGSLIHGHSHPKICTAIRQGLERGSSYGLTSEQEILFAEEIFSY
LGLETNYKIRFMSTGSEATMTAVRLARGITGRPIIIKFLGCYHGHADTFLQEKPFSHT
SLETLDLAHPLTLSLPFNDFPLFQTVMNSLGHKVAGVIFEPVCANMGVILPVPGFIEG
VIQTCQQTGSFSIMDEVVTGFRVAQGGAAALYHVKPDILVFGKILGGGLPASAVVTPK
DIMDHLAPEGKIFQAGTLSGNPLAMIAGKVSVNLCREQGFYTQLATIEQNFLSPIEHM
IRTTGIPVTLVRYGSLFSFFFNPNRPNNLADAQLSDIEAFQKFYQSAFSKGVYLSPSP
FEASFLSAAHSMESLDYAQTALIESLEQVFSLV"
misc_feature 238421..239686
/gene="hemL"
/locus_tag="CTDLC_0210"
/note="glutamate-1-semialdehyde aminotransferase;
Provisional; Region: PRK00615"
/db_xref="CDD:134334"
misc_feature 238430..239665
/gene="hemL"
/locus_tag="CTDLC_0210"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(238757..238765,238841..238846,238850..238852,
239009..239011,239108..239110,239114..239119,
239192..239194)
/gene="hemL"
/locus_tag="CTDLC_0210"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(238760..238765,238841..238846,239009..239011,
239108..239110,239117..239119,239192..239194)
/gene="hemL"
/locus_tag="CTDLC_0210"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 239192..239194
/gene="hemL"
/locus_tag="CTDLC_0210"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene complement(239681..240250)
/gene="algH"
/locus_tag="CTDLC_0211"
/db_xref="GeneID:12387693"
CDS complement(239681..240250)
/gene="algH"
/locus_tag="CTDLC_0211"
/note="transcriptional regulator"
/codon_start=1
/transl_table=11
/product="AlgH"
/protein_id="YP_005812142.1"
/db_xref="GI:385244298"
/db_xref="GeneID:12387693"
/translation="MTKLPYALLDKGSLLVASPDINGGIFSRSVVLVCEHSPNGSFGL
ILNKILEIDSPEEIFPLDHFDESKVRFCMGGPLQANQIMLLHTSPDSANSSIEICPSV
FLGGDFSFAGEKEGRTRDDKMLLCFGYSGWQGGQLEKEFLERLWFLAPSSQEIIFTDA
PERMWSDVLQHLGGRFASLSTIPENLLLN"
misc_feature complement(239708..240250)
/gene="algH"
/locus_tag="CTDLC_0211"
/note="Putative transcriptional regulator [Transcription];
Region: COG1678"
/db_xref="CDD:224592"
gene complement(240270..240737)
/locus_tag="CTDLC_0212"
/db_xref="GeneID:12387694"
CDS complement(240270..240737)
/locus_tag="CTDLC_0212"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812143.1"
/db_xref="GI:385244299"
/db_xref="GeneID:12387694"
/translation="MSEKKNIMNIDREIISDTSLILINFYKLVSFRNYAGIILGTDEK
QFAIYGHASMDVAFKKREDLAAEEERSRPSTHDVLNFVLTSFDLSVVRVVITEYKDNV
FYSRLFLEQKRGDRLYIADIDARPSDSIPLAIKYQAPILCVKSIFDEAIPYED"
misc_feature complement(240273..240701)
/locus_tag="CTDLC_0212"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1259"
/db_xref="CDD:31451"
gene complement(240706..241434)
/gene="rpiA"
/locus_tag="CTDLC_0213"
/db_xref="GeneID:12387695"
CDS complement(240706..241434)
/gene="rpiA"
/locus_tag="CTDLC_0213"
/EC_number="5.3.1.6"
/codon_start=1
/transl_table=11
/product="Ribose 5-phosphate isomerase"
/protein_id="YP_005812144.1"
/db_xref="GI:385244300"
/db_xref="GeneID:12387695"
/translation="MSKQPENSFSSDKFFPIKQKLALEAVALVEPGMCVGLGSGSTAR
EFILALGDRVRTERLVITAVASSRISQLLAEAVGIPLSDHSLLQDVDLVVDGADEVDP
CLRMIKGGGGALFREKILLQSGKRNVILVDERKLVPTLGKFSLPIEIAPFGCSSVQRI
LNKQGYFGEWRETSAGERFITDNGNYIYDVRTPDSYANPEEDMIRLLQIRGIIDVGFV
IAKAEVWVGYADGSIVRKKEHNEY"
misc_feature complement(240751..241383)
/gene="rpiA"
/locus_tag="CTDLC_0213"
/note="RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first step
of the non-oxidative branch of the pentose phosphate
pathway. This reaction leads to the...; Region: RPI_A;
cd01398"
/db_xref="CDD:238692"
misc_feature complement(order(240877..240879,240889..240891,
240895..240897,240919..240924,241102..241107,
241186..241188,241192..241194,241219..241224,
241231..241233,241318..241320))
/gene="rpiA"
/locus_tag="CTDLC_0213"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:238692"
misc_feature complement(order(241030..241032,241084..241086,
241102..241113,241141..241143,241147..241152,
241309..241314,241318..241320))
/gene="rpiA"
/locus_tag="CTDLC_0213"
/note="active site"
/db_xref="CDD:238692"
misc_feature complement(order(240796..240798,240811..240816,
240958..240960,240967..240975,240979..240984,
241066..241068,241087..241089,241171..241173,
241183..241185))
/gene="rpiA"
/locus_tag="CTDLC_0213"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238692"
gene complement(241529..243172)
/locus_tag="CTDLC_0214"
/db_xref="GeneID:12387696"
CDS complement(241529..243172)
/locus_tag="CTDLC_0214"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812145.1"
/db_xref="GI:385244301"
/db_xref="GeneID:12387696"
/translation="MRTDSLFNPPDSTRGVFQFLETQCDRAVARSRQSQFIGLVSAVA
AAALLLLLVVALSVPGFPVAASIVVGVLFALSIVALTASFLVYIANAKLVAIRIKFLS
SGLQDHFSESSILGTLRKGRGASIPLISGQADDPLPNRIGIKKSTEMRVLQKGIGTDY
KKYKQHLDRVNNDFTFVCEGISALIPTEKDAPFPIEPSHLAGVFLVSFSPDKNPILKI
TRHAEKMLQPPQGGFPNGLVWLCGALSDPKKFAAPFLSLIEKTHQGILVSKDLKDNKE
RKLALEASLLSLNIFFSGWCLGNPEYNQYITTAVAEKYRDVSVRNCIYDFLDTGNVIS
ALALASSYSQDSAWAAGLQKVLREEDKKTKKKSREEVSCLYRDIDPGCCLRALPKRFE
SKSSGSQGSPKEQLSSLLKALDQKIPSGILGLIAKASSADLKADFAGMLEVIKQLQAL
FDSYPPLCEDNILLWLSASLEQVGLQKKLRTFLPSSEKKLLERVLSTFLLGLYTRGVF
SVGQVNQLATICNTQDSTEFCQRVSDLSLIKRALPALFG"
gene 243476..244522
/gene="dhnA"
/locus_tag="CTDLC_0215"
/db_xref="GeneID:12387697"
CDS 243476..244522
/gene="dhnA"
/locus_tag="CTDLC_0215"
/EC_number="4.1.2.13"
/codon_start=1
/transl_table=11
/product="Fructose-bisphosphate aldolase"
/protein_id="YP_005812146.1"
/db_xref="GI:385244302"
/db_xref="GeneID:12387697"
/translation="MTTIFDLLGKDADYLLNHKCVIKKEALTLPSGDLVSRVFAESDR
NNRVLRSLQQMFSCGRLGGTGYLSILPVDQGVEHTAGASFAKNPMYFDPENIVRLAME
AGCSAVASSYGVLSILARRYAHKIPFLLKLNHNELLSYPTTYHQIFFSQVEDAYNMGA
VAVGATIYFGSESSSEEIVAVAEAFARARELGLATVLWCYLRNPHFVVNNVDYHTAAD
LTGQADHLGATLGADIVKQKLPTLQGGFKTINFSKTDDLVYSELSSNHPIDLCRYQVL
NSYCGKVGLINSGGPSGQDDFAEAVKTAVINKRAGGMGLILGRKAFQRPFSEGVRLLN
LIQDIYLDPTISIS"
misc_feature 243476..244519
/gene="dhnA"
/locus_tag="CTDLC_0215"
/note="fructose-bisphosphate aldolase; Provisional;
Region: PRK09250"
/db_xref="CDD:236431"
misc_feature 243674..244498
/gene="dhnA"
/locus_tag="CTDLC_0215"
/note="Class I fructose-1,6-bisphosphate (FBP) aldolases
of the archaeal type (DhnA homologs); Region: DhnA;
cd00958"
/db_xref="CDD:188645"
misc_feature order(244229..244231,244322..244324,244391..244399,
244463..244471)
/gene="dhnA"
/locus_tag="CTDLC_0215"
/note="putative active site; other site"
/db_xref="CDD:188645"
misc_feature 244229..244231
/gene="dhnA"
/locus_tag="CTDLC_0215"
/note="catalytic residue [active]"
/db_xref="CDD:188645"
gene 244536..245936
/gene="xasA"
/locus_tag="CTDLC_0216"
/db_xref="GeneID:12387698"
CDS 244536..245936
/gene="xasA"
/locus_tag="CTDLC_0216"
/codon_start=1
/transl_table=11
/product="Glutamate/gamma-aminobutyrate antiporter"
/protein_id="YP_005812147.1"
/db_xref="GI:385244303"
/db_xref="GeneID:12387698"
/translation="MHHRKSSTSLGTFTVGMLSLAVVISLRNLPLTAKHGLSTLFFYA
VAVACFMIPYALIAAELASFKPQGIYVWTRDALGKRWGFFAIWMQWFHNMTWYPAMLA
FIASTLVYQISPDLANNRLYLSSVILLGFWGLTFFNVLGIGTSALFSSICAIVGTLIP
GAILVAFAAYWIQGGNPIAINFSWSELLPDFSSPSSFVLLSGMLLALCGLEANANLAS
DMEDPKRNYPKAVFIGAVSTLAILVLGSLAIAIVIPKEEISLVSGLIRAFSLFFEKYN
LSWMTGIIVAMTIAGSLGELNAWMFAGTKGLFISTQNDCLPKIFKKTNSRDVPTNLML
FQAIVVTLFTFIFVYVDSADLAYWILSALSAQMYLVMYICLFIVGPVLRIKEPKAQRL
YSVPGKLVGMCVLSTLGILSCLFALGISFLPPQEVVSFSTMGGNFGYTALLLLAFVIN
CCIPFGMYYSHKKLIK"
misc_feature 244563..245921
/gene="xasA"
/locus_tag="CTDLC_0216"
/note="putative glutamate/gamma-aminobutyrate antiporter;
Region: put_Glu_GABA_T; TIGR03813"
/db_xref="CDD:163525"
gene 245943..246794
/gene="ttcA"
/locus_tag="CTDLC_0217"
/db_xref="GeneID:12387699"
CDS 245943..246794
/gene="ttcA"
/locus_tag="CTDLC_0217"
/note="tRNA s2C32 biosynthesis protein"
/codon_start=1
/transl_table=11
/product="TtcA"
/protein_id="YP_005812148.1"
/db_xref="GI:385244304"
/db_xref="GeneID:12387699"
/translation="MHRKGLCKEALFFLRLTWISNSQIFKISLMFTLQCSPPWTKLGK
RVESLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAISGRGFPELTIHAIHIG
GKYSCGAAVSGNYLSSICDKIQVPLISIPSPYETENPECYTCSRIRRRLLFDTAKAVG
ATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPIVDMVNFGITILRPLIFIPEDLIRKF
AKESGFARITCRCPVISLRTKTEEALKTLETIFPQARHNIALAVRETGLSKANRVEQY
DSLLTEA"
misc_feature 246063..246788
/gene="ttcA"
/locus_tag="CTDLC_0217"
/note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning]; Region:
MesJ; COG0037"
/db_xref="CDD:30386"
misc_feature 246135..246638
/gene="ttcA"
/locus_tag="CTDLC_0217"
/note="This is a subfamily of Adenine nucleotide alpha
hydrolases superfamily.Adeninosine nucleotide alpha
hydrolases superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which binds
to Adenosine group. This subfamily; Region:
Alpha_ANH_like_II; cd01993"
/db_xref="CDD:30180"
misc_feature order(246147..246155,246159..246170,246240..246242,
246246..246248)
/gene="ttcA"
/locus_tag="CTDLC_0217"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30180"
gene 246895..247776
/gene="surE"
/locus_tag="CTDLC_0218"
/db_xref="GeneID:12387700"
CDS 246895..247776
/gene="surE"
/locus_tag="CTDLC_0218"
/EC_number="3.1.3.2"
/note="acid phosphatase"
/codon_start=1
/transl_table=11
/product="SurE"
/protein_id="YP_005812149.1"
/db_xref="GI:385244305"
/db_xref="GeneID:12387700"
/translation="MRNEKYKRGLMTETRRLRILITNDDGIKAKGISLLISLLREADF
ADLYVVAPLEEQSGRSMAFSLVEPTALEPFDYPQRVQEAWAVTGTPVDCVKLAIGELF
KENALDLILSGINNGKNSGRCLYYSATVGAIREANLHGIPAIALSQSENIAFFQKAHM
ASLIRSLCEFTVAYKHTDPLGLNVNFPASTDDSPWKGIRFTLSGNEFLFGIPRLVRTE
GNRRYYTLYDMRDKVSEEFSEEYLALANNYISAAPLVSKNTPRATLSEEELAFLKDSF
EQSVLWKASLNLEEDLA"
misc_feature 246943..247692
/gene="surE"
/locus_tag="CTDLC_0218"
/note="5'(3')-nucleotidase/polyphosphatase; Provisional;
Region: surE; PRK00346"
/db_xref="CDD:178982"
gene 247888..248796
/gene="ubiA"
/locus_tag="CTDLC_0219"
/db_xref="GeneID:12387701"
CDS 247888..248796
/gene="ubiA"
/locus_tag="CTDLC_0219"
/EC_number="2.5.1.-"
/codon_start=1
/transl_table=11
/product="4-hydroxybenzoate polyprenyltransferase"
/protein_id="YP_005812150.1"
/db_xref="GI:385244306"
/db_xref="GeneID:12387701"
/translation="MSKIVLIQQLIKCKYALFAALFLASSTLFCFSLPCTPFSLFSLG
SIKTISLGGSAFFIARALGMIVNQVVDCAIDKRNPRTQSRVLPTELLSIKHSMLLLTL
CLILFLSTCWLFNPLCFSLAVLSTLIMIIYPYTKRFTFLCHWILGLVYYLAILMNFFA
IIETPSFSLFCMSSLLGISFGMIIAANDIIYALQDVEFDQKEGLFSIPARFGTKQAIT
IASANLIASAIAYLLIGYFVPNKTIFYLCSLVPLTGILRTIKHYSLIDPRAKSTLQQN
FFLGNLSLGIAFFANMIGLFLLRGIL"
misc_feature 247888..248787
/gene="ubiA"
/locus_tag="CTDLC_0219"
/note="prenyltransferase; Reviewed; Region: ubiA;
PRK12876"
/db_xref="CDD:237244"
misc_feature 248050..>248529
/gene="ubiA"
/locus_tag="CTDLC_0219"
/note="UbiA prenyltransferase family; Region: UbiA;
pfam01040"
/db_xref="CDD:216260"
gene 248793..249371
/gene="ubiX"
/locus_tag="CTDLC_0220"
/db_xref="GeneID:12387702"
CDS 248793..249371
/gene="ubiX"
/locus_tag="CTDLC_0220"
/EC_number="4.1.1.-"
/note="UbiX"
/codon_start=1
/transl_table=11
/product="3-polyprenyl-4-hydroxybenzoate decarboxylase"
/protein_id="YP_005812151.1"
/db_xref="GI:385244307"
/db_xref="GeneID:12387702"
/translation="MKRYVVGISGASGIVLAVTLVSELARLGHHIDVIISPSAQKTLY
YELDTKSFLSTIPQNFHNQIVLHHISSIESSVSSGSNTIDATIIVPCSVATVAAISCG
LADNLLRRVADVALKEKRPLILVPREAPLSAIHLENLLKLAQNGAVILPPMPIWYFKP
QTAEDIANDIVGKILAILQLDSPLIKRWENPR"
misc_feature 248793..249368
/gene="ubiX"
/locus_tag="CTDLC_0220"
/note="aromatic acid decarboxylase; Validated; Region:
PRK05920"
/db_xref="CDD:180312"
misc_feature 248796..249197
/gene="ubiX"
/locus_tag="CTDLC_0220"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:217035"
gene complement(249368..250264)
/gene="yqfU"
/locus_tag="CTDLC_0221"
/db_xref="GeneID:12387703"
CDS complement(249368..250264)
/gene="yqfU"
/locus_tag="CTDLC_0221"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812152.1"
/db_xref="GI:385244308"
/db_xref="GeneID:12387703"
/translation="MAHTIRFTKFSFPLYFSKTLSWFIIGGFLAACGVHMILAPNDLI
DGGIVGLSMIAAHSFGHQFLPVFLVLFNLPFIILAYKRIGKYFVVQMITAVIIFSCWL
WLIEVLPEWLGIQPFIFDGSEIETIVLGGVVLGAGGGLIIRHGGATDGTEILGIIVNK
KRGYTVGQVILFVNFFIFSLGGIVYRNWHTAFMSLLTYAVAIKVMDMVILGFEDTKSV
TIITSSPRKLGNILMETLGVGLTYLHAEGGFSGEPRSLLYIVVERLQLSQLKEIVHRE
DPSAFIAIENLHEVINEKRTSH"
misc_feature complement(249377..250252)
/gene="yqfU"
/locus_tag="CTDLC_0221"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1284"
/db_xref="CDD:224203"
misc_feature complement(249392..249550)
/gene="yqfU"
/locus_tag="CTDLC_0221"
/note="Uncharacterized protein conserved in bacteria
(DUF2179); Region: DUF2179; pfam10035"
/db_xref="CDD:204383"
gene complement(250288..250361)
/locus_tag="CTDLC_r031"
/db_xref="GeneID:12387704"
tRNA complement(250288..250361)
/locus_tag="CTDLC_r031"
/product="tRNA-Asp"
/db_xref="GeneID:12387704"
gene complement(250369..250441)
/locus_tag="CTDLC_r030"
/db_xref="GeneID:12387705"
tRNA complement(250369..250441)
/locus_tag="CTDLC_r030"
/product="tRNA-Val"
/db_xref="GeneID:12387705"
gene complement(250720..251121)
/locus_tag="CTDLC_0222"
/db_xref="GeneID:12387706"
CDS complement(250720..251121)
/locus_tag="CTDLC_0222"
/codon_start=1
/transl_table=11
/product="LAGLI-DADG endonuclease"
/protein_id="YP_005812153.1"
/db_xref="GI:385244309"
/db_xref="GeneID:12387706"
/translation="MRSDMRCCCVRTNYEEVRSSSTGDQVVSAVKERKCDSSLCRKIA
SVAFTLIGALLLGIGMVLSFALLGSSAGLIGVGVILSALGAVCLSLGLCKLFLRMKRV
SLDKAEQKMLEDQVELLRQENQELKALVYSN"
gene complement(251251..252063)
/locus_tag="CTDLC_0223"
/db_xref="GeneID:12387707"
CDS complement(251251..252063)
/locus_tag="CTDLC_0223"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812154.1"
/db_xref="GI:385244310"
/db_xref="GeneID:12387707"
/translation="MVSLALGTSNGVEANNGINDLSPAPEAKKTGSGLCYKISAVAAL
VLGLLAAAGGAVVLALFCTFAPPLFFYAGVALVALGAVILGVGVSNTCSCCLRSRKIE
AHKQLILQQKEEISQLEQQLAKALKELNTKYPASLLERRDLRENLKAWQSCCLNLEKE
VRDLLTKLGGYQERLKVLPAKEKQIEELKAMLEHYSRICHERGELINLLKTANKKLSK
ESEKLLFNYKAHRDVCLGEKVLVKSVNLIDLDPKSDSSDGDDDDGFNYGSRV"
misc_feature complement(251431..>251772)
/locus_tag="CTDLC_0223"
/note="IncA protein; Region: IncA; pfam04156"
/db_xref="CDD:217933"
gene complement(252454..252897)
/locus_tag="CTDLC_0224"
/db_xref="GeneID:12387708"
CDS complement(252454..252897)
/locus_tag="CTDLC_0224"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812155.1"
/db_xref="GI:385244311"
/db_xref="GeneID:12387708"
/translation="MSFVGDSVPLRSYMPEAPLVDSASKARVSCCSERIAVLALGILS
ILFIVTGAALFIGAGWTTLPMIDVVVTLVVFGSVMLGAVLTRISSYGGEPKKVSLDRF
VLENERQGFLDKQRLADISKEEIALAKQQIEEEKEAILHSIFPND"
misc_feature complement(<252487..252810)
/locus_tag="CTDLC_0224"
/note="IncA protein; Region: IncA; pfam04156"
/db_xref="CDD:146672"
gene complement(252988..253356)
/locus_tag="CTDLC_0225"
/db_xref="GeneID:12387709"
CDS complement(252988..253356)
/locus_tag="CTDLC_0225"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812156.1"
/db_xref="GI:385244312"
/db_xref="GeneID:12387709"
/translation="MANNSFIHRSKTYQLFVVVLTSLLAALGGVFLCLGGVYSSLVLG
VVGGAAIIGSCIGAFGLVSYLLSVIRNSDQLLQEAKESARKISSHYRVLETQKNREIG
LLEERVNMLDGFYAKFHGWD"
gene complement(253455..253985)
/locus_tag="CTDLC_0226"
/db_xref="GeneID:12387710"
CDS complement(253455..253985)
/locus_tag="CTDLC_0226"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812157.1"
/db_xref="GI:385244313"
/db_xref="GeneID:12387710"
/translation="MLAFFLRNRGAMFNISFCCNSSKPLRADHTETIGAQTTTSRKEQ
LLAIGALVLGVLAVLGGALLLLFSGSVVSLFAPILSLLAMTLGSACIGGSLVYMYGFS
LKPTRLPSESSELAPEAVTPGLVLSYQELLYEAEEDLKEVEGLLAQKSKDLELAQKKI
EQLQSGLKCVLEESLI"
gene complement(254101..254502)
/locus_tag="CTDLC_0227"
/db_xref="GeneID:12387711"
CDS complement(254101..254502)
/locus_tag="CTDLC_0227"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812158.1"
/db_xref="GI:385244314"
/db_xref="GeneID:12387711"
/translation="MSYLFCSSCAPTLESPAELCLYKTHIYCKRRGNIEFAVSLGIFA
ILSCVALLCLLCGGSSLVFAGLGIGAIMIGSVALGVGLTFLYWSCSRGLQNRIRTNIL
ASSDSSSLFSSKSDFSLEFELNEADVTISVS"
gene complement(254773..255363)
/locus_tag="CTDLC_0228"
/db_xref="GeneID:12387712"
CDS complement(254773..255363)
/locus_tag="CTDLC_0228"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812159.1"
/db_xref="GI:385244315"
/db_xref="GeneID:12387712"
/translation="MSTTISGDASSLPLPTASCVEIKSTSSSTKGNTCSKILDIALAI
VGALVVVAGVLALVLCASNVIFTAIGIAALIIGSACVGAGISRLMCRSSYASLEAKNV
LAEQRLRNLSEEKDALVSVSFINKMFLRGLTDDLQALEAKAIEVEIDCLDRLEKNEQA
LLSDVRLVLSSYTRWLDSAEKEKAALKASIDANQAS"
gene complement(255513..256160)
/locus_tag="CTDLC_0229"
/db_xref="GeneID:12387713"
CDS complement(255513..256160)
/locus_tag="CTDLC_0229"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812160.1"
/db_xref="GI:385244316"
/db_xref="GeneID:12387713"
/translation="MSCSNINSGAPATLFAKGAAAISSRVDTMRQMCSARVGAKTCGI
ALTIIGLLVATAGVVIAAVGIGTPASLAAGMILVMVGSLLLGLGLARARSRRVEVERH
LEVVSMQIEGLKEEYKALFEVYQVNLEARRAVSKHCQDLEEQILDLCKRYAETVCSIE
EDAEQEIRHQTEGFKQRLQQSQNTCSQLTAELCKLRSENKTLSERLQVQASRRKK"
gene 256386..257633
/locus_tag="CTDLC_0230"
/db_xref="GeneID:12387714"
CDS 256386..257633
/locus_tag="CTDLC_0230"
/codon_start=1
/transl_table=11
/product="Proton/sodium-glutamate symport protein"
/protein_id="YP_005812161.1"
/db_xref="GI:385244317"
/db_xref="GeneID:12387714"
/translation="MRSPLKLLFSPEKSNMMLGLSILLGLLLGWPHLSFVSLSAEVIS
AVFLKLLRLLSLPLVFFAIGSTITSINNLKSMVSVVRSSLYYTLLTTLISAAMALVLF
IFIKPSVPLSGFNAATETNATGYLSVLSKTIPGNILEPFLESNVIAAAFLSALLATFS
LSLPENERLFVRNAFNTLFSLLLSISKGILKMLLLATFAFSLLFVREMRTGNLELSSF
GEYLFCIVTANCLQGFLVLPLLLKMKGISPLRTFKLMSRPLATAFFSKSSAATLPLTM
EVAEENLHIRPTISRFVFPLCSVINMNACAAFILTTVLFVGVSNGIVFSPLSLISWVF
IATLAAVGNAGVPMGCYFLTSSLLASMNVPLCLLGLILPAYALLDMLETLINVWSDCC
VVSVINKKFSETEDLPPCSYTNE"
misc_feature 256560..257603
/locus_tag="CTDLC_0230"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
misc_feature 256560..257582
/locus_tag="CTDLC_0230"
/note="Sodium:dicarboxylate symporter family; Region: SDF;
pfam00375"
/db_xref="CDD:201189"
gene 257817..259289
/locus_tag="CTDLC_0231"
/db_xref="GeneID:12387715"
CDS 257817..259289
/locus_tag="CTDLC_0231"
/codon_start=1
/transl_table=11
/product="Sodium-dependent amino acid transporter"
/protein_id="YP_005812162.1"
/db_xref="GI:385244318"
/db_xref="GeneID:12387715"
/translation="MNKKNTVFSSRLGFILSMMGVAIGAGNIWRFPRMVAQNGGGTFI
LLWLLFLIIWSIPLIIVELSIGKLTRKAPIGALIRTAGPKSAWLGGFIVLVATCILGY
YSNIVGWGFSYFFYSLSGKIVPGNHFPQLWAHHCQSWMPLSCHCLALFLAYCIIRKGI
VNGIETCNKILIPFFFICALVLLARAVSLPHAWEGIRLLFVFNKASLCDYKVWIEALT
QNAWDTGAGWGLLLVYAGFASKQTSLVTNGAITAITNNFISFLMAVIVFSACASLDST
EMLGLREGVGASNIGMAFIYLPELFTRLPHAHILSTFFSAIFFLAFSMAALSSMISML
FLLSQTLTEFGIKKHIAESSATIAAFLIGVPSALNLQFFDNQDIVWGIALILNGMIFI
YSALSYGIKRLRQDVINSVPGDYKLKTYFDILVKFLLPLEGVLLLAWYFYEGAMLPQA
YWWNPFVSYNISSLLMQWGLGGGVLFLLNRKLYTKFYLNN"
misc_feature 257838..259139
/locus_tag="CTDLC_0231"
/note="solute carrier 6 subfamily, Fusobacterium nucleatum
Tyt1-like; solute-binding domain; Region:
SLC6sbd_Tyt1-Like; cd10336"
/db_xref="CDD:212043"
misc_feature order(257874..257876,257883..257885,258777..258779,
258786..258791)
/locus_tag="CTDLC_0231"
/note="Na2 binding site [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature order(257877..257882,257886..257897,258123..258125,
258480..258485,258498..258500,258504..258506,
258789..258791,258798..258803)
/locus_tag="CTDLC_0231"
/note="putative substrate binding site 1 [chemical
binding]; other site"
/db_xref="CDD:212043"
misc_feature order(257880..257882,257895..257897,258483..258485,
258579..258581)
/locus_tag="CTDLC_0231"
/note="Na binding site 1 [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature order(257901..257906,258120..258122,258132..258134,
258141..258143,258675..258677,258696..258698)
/locus_tag="CTDLC_0231"
/note="putative substrate binding site 2 [chemical
binding]; other site"
/db_xref="CDD:212043"
gene 259394..259741
/gene="incB"
/locus_tag="CTDLC_0232"
/db_xref="GeneID:12387716"
CDS 259394..259741
/gene="incB"
/locus_tag="CTDLC_0232"
/codon_start=1
/transl_table=11
/product="Inclusion membrane protein B"
/protein_id="YP_005812163.1"
/db_xref="GI:385244319"
/db_xref="GeneID:12387716"
/translation="MVHSVYNSLAPEGFSQVSIQPSQIPTSKKVMIAIMTLFALTAIA
AIVLSIVTVCGGFPFLLAALNTVTIGACVSLPVFTCIATTLLLLCLRNIELLARPQVF
TLSTQFSPTKPQE"
gene 259818..260354
/gene="incC"
/locus_tag="CTDLC_0233"
/db_xref="GeneID:12387717"
CDS 259818..260354
/gene="incC"
/locus_tag="CTDLC_0233"
/codon_start=1
/transl_table=11
/product="Inclusion membrane protein C"
/protein_id="YP_005812164.1"
/db_xref="GI:385244320"
/db_xref="GeneID:12387717"
/translation="MTYSISDIAHKSDISNPTSPAPSRKRGSFPPQSPSAVGSLEGAN
FSTWGPGPFFTVPVYPQQLAAMQNNLFTLQTEVSALKKKLVQSSQTRGSLGLGPQFLA
ACLVAATILAVAVIVLASLGLGGVLPFVLVCLAGSTNAIWAIVSASITTLICCVSIAC
IFLAKCDKGSDPQTLYVS"
gene 260385..263198
/locus_tag="CTDLC_0234"
/db_xref="GeneID:12387718"
CDS 260385..263198
/locus_tag="CTDLC_0234"
/codon_start=1
/transl_table=11
/product="ADP,ATP carrier protein"
/protein_id="YP_005812165.1"
/db_xref="GI:385244321"
/db_xref="GeneID:12387718"
/translation="MKLTIKSISMLLFYKGSGSLRALRFLLSLRRGEEKRALLFLLLG
LIWSVACYGSLALGESLFLEEIGAEKLPFAYLGASFFLCFISCLILYNLSRKRVSPKA
LFLSFISCVLICNLYLFWHLAIHKGVSGTPTFLYRILIWGLTILCYANFWGFIDQFFN
IQDAKRHFCIFNAITFCGDFLGARIVNQIQYLGAELILLAFIVVITFIFPLVHYISSS
LKELSEDHNLFLDTGYPPSTKQTLKLCLKDKYTFYLVSFYFLMQLLVVFTEFNYLKIF
DAQFGNAETCELTENFTKYSSWISLGNMFFALFAYSRVITRFGINNIILFAPICFFSL
FCCWSIKTSVFIATMGMIAREGLAYALDDNNLQLLIYGIPNKIRNQVRIAIESFVEPA
GMFICALLCLFIPHQYVLCIIISAVCILLAILLRTHYSKAILRNLSLESIHRRRSIRE
WFADMNDTEKRQAEILLLTHLKNPQERNQMFAFQHLLNLKNRAVLPNLLLHMNKLGLS
GKLKTLNMLKNSVWAKDFLTLELLKRWSSLPQHPTIAAALHLYFVEHDLLHVSDIADD
LYDQSGDRLFAAVLIVRKHKPSGEYQALAEKHLSEILESEDPELIIKGLSILALERSP
SNFPIILPFLTHPNEQVFLQACLSLETCADKQYAQYGRTVLNTLKKTKDTQAAQALLN
TLAALLDASLVYEFVLASVQLKNVLRKLAETILASLPKECIPILIEMVADHSLHNSCR
IMAAKALSHIDSRQLKRLALKILKSKAAKTLFYDYHKNFIQKRYPRYDLHLLIESLEA
NYQAEVNFMLAFLAIVGSSDYADVLIRSLTGKNLKARAQALESLEKDCENHLFTLVTP
FVYRDKHTSDEKYYMKKGVEPLAIEELLNRLEQTPFLFSKLIAQQLKEELSLCDAEFS
SALQSFAKKQKTSILSREYITSS"
misc_feature 260496..261662
/locus_tag="CTDLC_0234"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(260538..260540,260547..260555,260559..260564,
260613..260615,260622..260627,260634..260636,
260646..260651,260655..260660,260817..260819,
260826..260831,260838..260843,260850..260852,
260886..260891,260898..260903,260919..260921,
261171..261173,261180..261185,261192..261197,
261216..261218,261258..261260,261270..261272,
261282..261284,261291..261293,261303..261305,
261450..261452,261459..261464,261471..261473,
261483..261488,261495..261497,261525..261527,
261531..261533,261540..261545,261552..261557,
261564..261566)
/locus_tag="CTDLC_0234"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 263227..263640
/locus_tag="CTDLC_0235"
/db_xref="GeneID:12387719"
CDS 263227..263640
/locus_tag="CTDLC_0235"
/codon_start=1
/transl_table=11
/product="Transcription regulator, crp family"
/protein_id="YP_005812166.1"
/db_xref="GI:385244322"
/db_xref="GeneID:12387719"
/translation="MNLIDKAFLLKKTFLFASLDMDVLLSIADKSEVMLFKAGSEIFS
EGQPSFSLYVIAEGCVKIFAKEPAINVRLKPLDCFGEESFFNNKVREYSAEAITLVKT
LILNKGQFLSIIEECHSVSLVLLESYSKQIVFRDQ"
misc_feature 263251..>263622
/locus_tag="CTDLC_0235"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:223736"
misc_feature 263269..263601
/locus_tag="CTDLC_0235"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:237999"
misc_feature order(263464..263469,263494..263502)
/locus_tag="CTDLC_0235"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:237999"
misc_feature order(263560..263568,263578..263586)
/locus_tag="CTDLC_0235"
/note="flexible hinge region; other site"
/db_xref="CDD:237999"
gene complement(263701..263934)
/gene="acpP"
/locus_tag="CTDLC_0236"
/db_xref="GeneID:12387720"
CDS complement(263701..263934)
/gene="acpP"
/locus_tag="CTDLC_0236"
/codon_start=1
/transl_table=11
/product="acyl carrier protein"
/protein_id="YP_005812167.1"
/db_xref="GI:385244323"
/db_xref="GeneID:12387720"
/translation="MSLEDDVKAIIVDQLGVSPEDVKVDSSFIEDLNADSLDLTELIM
TLEEKFAFEISEDDAEQLRTVGDVIKYIQERQN"
misc_feature complement(263704..263934)
/gene="acpP"
/locus_tag="CTDLC_0236"
/note="acyl carrier protein; Provisional; Region: acpP;
PRK00982"
/db_xref="CDD:179197"
gene complement(264303..265049)
/gene="fabG"
/locus_tag="CTDLC_0237"
/db_xref="GeneID:12387721"
CDS complement(264303..265049)
/gene="fabG"
/locus_tag="CTDLC_0237"
/EC_number="1.1.1.100"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP reductase"
/protein_id="YP_005812168.1"
/db_xref="GI:385244324"
/db_xref="GeneID:12387721"
/translation="MSGLLVNKTAIVTGGSRGIGFSIAKLFAEQGANVQIWGINGEAG
QAAAQTLSEQTGRQVSFALVDVSKNDMVSAQVQNFLAEYNTIDVIVNNAGITRDALLM
RMSEEEWSSVINTNLGSIYNVCSAVIRPMIKARSGAIINISSIVGLRGSPGQTNYAAA
KAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKSLNDNLKNEWLKGVPLGRVGMP
EEIAKAALFLASDGSSYITGQVLSVDGGMA"
misc_feature complement(264309..265028)
/gene="fabG"
/locus_tag="CTDLC_0237"
/note="beta-Keto acyl carrier protein reductase (BKR),
involved in Type II FAS, classical (c) SDRs; Region:
BKR_SDR_c; cd05333"
/db_xref="CDD:187594"
misc_feature complement(264306..265022)
/gene="fabG"
/locus_tag="CTDLC_0237"
/note="3-oxoacyl-(acyl-carrier-protein) reductase; Region:
3oxo_ACP_reduc; TIGR01830"
/db_xref="CDD:233590"
misc_feature complement(order(264468..264476,264480..264482,
264486..264491,264567..264569,264579..264581,
264618..264626,264705..264707,264765..264776,
264852..264860,264933..264938,264993..265004,
265008..265010))
/gene="fabG"
/locus_tag="CTDLC_0237"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187594"
misc_feature complement(order(264312..264350,264357..264359,
264369..264374,264378..264383,264390..264392,
264399..264410,264414..264422,264483..264485,
264519..264524,264528..264545,264549..264554,
264561..264566,264573..264578,264585..264608,
264654..264656,264663..264668,264675..264680,
264684..264689,264696..264701,264711..264713,
264720..264725,264732..264740,264744..264755,
264831..264833,264960..264962,264972..264974))
/gene="fabG"
/locus_tag="CTDLC_0237"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature complement(order(264528..264533,264537..264545,
264549..264554,264561..264566,264573..264578,
264585..264611,264654..264656,264663..264668,
264675..264677,264684..264689,264696..264701,
264711..264713,264720..264725,264732..264734,
264738..264740,264744..264752))
/gene="fabG"
/locus_tag="CTDLC_0237"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature complement(order(264567..264569,264579..264581,
264618..264620,264702..264704))
/gene="fabG"
/locus_tag="CTDLC_0237"
/note="active site"
/db_xref="CDD:187594"
gene complement(265046..265975)
/gene="fabD"
/locus_tag="CTDLC_0238"
/db_xref="GeneID:12387722"
CDS complement(265046..265975)
/gene="fabD"
/locus_tag="CTDLC_0238"
/EC_number="2.3.1.39"
/codon_start=1
/transl_table=11
/product="Malonyl-CoA-[acyl-carrier-protein] transacylase"
/protein_id="YP_005812169.1"
/db_xref="GI:385244325"
/db_xref="GeneID:12387722"
/translation="MMDRVGLLFPGQGSQFVGMGRDLYQQSSEVARLFSQADEFLGFS
LSSIMFEGPEEVLLKTSNSQLAIYLHSLAVLEVLSTHCPFEPILVSGLSLGEYTALTA
SKRISLEDGLRIVQKRAELMNAACEESSGAMAAVLGLTADVVLPALESLGDGIWVANY
NAPKQIVIAGIRNKVEEASVILRELGAKKVVMLKVAGAFHTPLMQTAQDELAPYLYQL
AIKDSNVAFASNVIGELVYESEAIRSLMVRQMTFPTLWYQTCFQIDPKVDLFLELGPG
NVLTGLSRSIGLSSPCKHLGSMEDIENFCRSCE"
misc_feature complement(265061..265972)
/gene="fabD"
/locus_tag="CTDLC_0238"
/note="(acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism]; Region: FabD; COG0331"
/db_xref="CDD:30679"
misc_feature complement(265118..265957)
/gene="fabD"
/locus_tag="CTDLC_0238"
/note="malonyl CoA-acyl carrier protein transacylase;
Region: fabD; TIGR00128"
/db_xref="CDD:199994"
gene complement(265989..266996)
/gene="fabH"
/locus_tag="CTDLC_0239"
/db_xref="GeneID:12387723"
CDS complement(265989..266996)
/gene="fabH"
/locus_tag="CTDLC_0239"
/EC_number="2.3.1.41"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP synthase"
/protein_id="YP_005812170.1"
/db_xref="GI:385244326"
/db_xref="GeneID:12387723"
/translation="MRVRVKKDMRASIWGTGSYLPKKILTNADLEKIVETSDEWISTR
TGIKERRIASAEEFSSFMGAKAAEKAIEAAKISKSQVDCIVFSTAAPDYIFPSSAALA
QAYLGIKEIPAFDCLAACTGFLYGLSIAKAYVESGMYQCVLVIAADKLSSFVNYQDRN
TCVLFGDGGSACIVGHSRPGALEISKVNLGADGKQGDLLRLPAGGSRCPASQDTVQNH
QHFITMEGKEVFKHAVRRMEFAAKTCITEAGLQEKDIDWLVPHQANERIIDAIAKRFA
VKDSRVFKTLAKYGNTAASSVGIALDELLRTHDIHVAERLLLVAFGGGLSWGAVILQQ
V"
misc_feature complement(265995..266972)
/gene="fabH"
/locus_tag="CTDLC_0239"
/note="3-oxoacyl-(acyl-carrier-protein) synthase III;
Region: fabH; TIGR00747"
/db_xref="CDD:162020"
misc_feature complement(266001..266969)
/gene="fabH"
/locus_tag="CTDLC_0239"
/note="Ketoacyl-acyl carrier protein synthase III (KASIII)
initiates the elongation in type II fatty acid synthase
systems. It is found in bacteria and plants. Elongation of
fatty acids in the type II systems occurs by Claisen
condensation of malonyl-acyl...; Region: KAS_III; cd00830"
/db_xref="CDD:29417"
misc_feature complement(order(266025..266027,266394..266399,
266415..266432,266541..266543,266598..266603,
266610..266615,266622..266624,266646..266666,
266688..266690,266697..266699,266724..266726,
266730..266732))
/gene="fabH"
/locus_tag="CTDLC_0239"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29417"
misc_feature complement(order(266124..266126,266214..266216,
266637..266639))
/gene="fabH"
/locus_tag="CTDLC_0239"
/note="active site"
/db_xref="CDD:29417"
misc_feature complement(266205..266207)
/gene="fabH"
/locus_tag="CTDLC_0239"
/note="CoA binding pocket [chemical binding]; other site"
/db_xref="CDD:29417"
gene 267110..267712
/gene="recR"
/locus_tag="CTDLC_0240"
/db_xref="GeneID:12387724"
CDS 267110..267712
/gene="recR"
/locus_tag="CTDLC_0240"
/note="Recombination protein"
/codon_start=1
/transl_table=11
/product="RecR protein"
/protein_id="YP_005812171.1"
/db_xref="GI:385244327"
/db_xref="GeneID:12387724"
/translation="MLKYPDYISKLISFLKKLPGIGFKSAEKIAFELLEWDPSQIEAM
AQALQEFSTSHATCSNCFCLKISQTSPCNFCSESRDSSSLCIVATPKDVFALEKSKIF
KGHYFVLGNLLSPITGKHLSLEKLAILKQRIEACSPKEMIIALDATLEGDATALFLKQ
EFSYLPIKISRLALGMPVGLSFDFVDANTLARAFSGRNCF"
misc_feature 267116..267703
/gene="recR"
/locus_tag="CTDLC_0240"
/note="recombination protein RecR; Region: recR;
TIGR00615"
/db_xref="CDD:233054"
misc_feature 267224..267349
/gene="recR"
/locus_tag="CTDLC_0240"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature 267353..267688
/gene="recR"
/locus_tag="CTDLC_0240"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature order(267371..267376,267383..267385,267545..267547,
267551..267553,267557..267559)
/gene="recR"
/locus_tag="CTDLC_0240"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature order(267371..267373,267545..267547)
/gene="recR"
/locus_tag="CTDLC_0240"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature order(267389..267397,267401..267406,267527..267529,
267533..267535,267539..267541,267548..267550,
267584..267586,267614..267649,267653..267655,
267668..267670,267674..267676,267680..267688)
/gene="recR"
/locus_tag="CTDLC_0240"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene 268087..270465
/gene="yaeT"
/locus_tag="CTDLC_0241"
/db_xref="GeneID:12387725"
CDS 268087..270465
/gene="yaeT"
/locus_tag="CTDLC_0241"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_005812172.1"
/db_xref="GI:385244328"
/db_xref="GeneID:12387725"
/translation="MLGIRKKTILQLAVLLLLTFSRSSFCSTSEGRMVVESITITTQG
ENTQNKRAIPKIKTKQGTLFSQADFDEDLRTLSKDFDRVEPIVEFRNGQAVISLILTA
KPVIREINISGNEAIPTHKILKTLELYKNDLFDRELFFKNFDALRTLYLKRGYYDSQL
SYSHNHNEKEGFIDISIEIKEGRHGRIKKLTISGITRTEASDLGDIVLTKQYSTTTSW
FTGAGVYHPDMVEQDLFAITNYFQNKGYADAKVSKEVSTDAKGNITLLIVVDKGPLYT
LGHVHIEGFTALSKRLLDKQLLVGPNSLYCPDKIWTGAQKIRSAYARYGYVNTNVDVS
FSAHPTLPVYDVTYRVSEGSPYKIGLIKIKGNTHTKHDVILHETSLFPGDTFDRLKLE
GTETRLRNTGYFKSVSVYTVRSQLDPLDSNDLYRDVFIEVKETETGNLGLFLGFSSID
HLFGGAEIAESNFDLFGARNFLKKGFKSLRGGGEYLFLKANLGDKVTDYTVKWTKPHF
LNTPWILGVELDKSINKALSKDYSVDTYGGNISTTYILNDKLKYGMYYRGSQTSLSLR
KKTSSSNRPGPDLDSNKGFVSAAGLNVLYDSIDNPRKPTMGIRSSLNFELSGLGGTYQ
FTKLTASGSIYRLLTKKGVLKVRAEAKFIKPFGTTTAQGIPVSERFFLGGETTVRGYK
PFIIGPKFSPTEPQGGLSSLLLTEEFQYPLISQPCINAFVFLDSGFIGIEEYTIRLKD
LCSSAGFGLRFDMMNNVPIMLGWGWPFRPTEILNNEKIDVSQRFFFALGGVF"
misc_feature 268171..270462
/gene="yaeT"
/locus_tag="CTDLC_0241"
/note="Outer membrane protein/protective antigen OMA87
[Cell envelope biogenesis, outer membrane]; Region:
COG4775"
/db_xref="CDD:227116"
misc_feature 268396..268632
/gene="yaeT"
/locus_tag="CTDLC_0241"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature 268642..268902
/gene="yaeT"
/locus_tag="CTDLC_0241"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature 268909..269145
/gene="yaeT"
/locus_tag="CTDLC_0241"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature 269152..269388
/gene="yaeT"
/locus_tag="CTDLC_0241"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature 269521..270462
/gene="yaeT"
/locus_tag="CTDLC_0241"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:216300"
gene 270534..271055
/gene="ompH"
/locus_tag="CTDLC_0242"
/db_xref="GeneID:12387726"
CDS 270534..271055
/gene="ompH"
/locus_tag="CTDLC_0242"
/note="Outer membrane protein"
/codon_start=1
/transl_table=11
/product="OmpH porin-like protein"
/protein_id="YP_005812173.1"
/db_xref="GI:385244329"
/db_xref="GeneID:12387726"
/translation="MKKFLLLSLMSLSSLPTFAANSTGTIGIVNLRRCLEESALGKKE
SAEFEKMKNQFSNSMGKMEEELSSIYSKLQDDDYMEGLSETAAAELRKKFEDLSAEYN
TAQGQYYQILNQSNLKRMQKIMEEVKKASETVRIQEGLSVLLNEDIVLSIDSSADKTD
AVIKVLDDSFQNN"
misc_feature 270534..271040
/gene="ompH"
/locus_tag="CTDLC_0242"
/note="Outer membrane protein [Cell envelope biogenesis,
outer membrane]; Region: HlpA; COG2825"
/db_xref="CDD:225381"
gene 271083..272147
/gene="lpxD"
/locus_tag="CTDLC_0243"
/db_xref="GeneID:12387727"
CDS 271083..272147
/gene="lpxD"
/locus_tag="CTDLC_0243"
/EC_number="2.3.1.-"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="YP_005812174.1"
/db_xref="GI:385244330"
/db_xref="GeneID:12387727"
/translation="MSQSTYSLEQLADFLKVEFQGNGATLLSGVEEIEEAKTAHITFL
DNEKYAKHLKSSEAGAIIISRTQFQKYRDLNKNFLITSESPSLVFQKCLELFITPVDS
GFPGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSY
IHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIG
ANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIG
GQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARPYQEIHRQVAKVRNLPRLE
ERIAALEKLVQKLEALSEQH"
misc_feature 271110..272093
/gene="lpxD"
/locus_tag="CTDLC_0243"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Region: lipid_A_lpxD; TIGR01853"
/db_xref="CDD:233599"
misc_feature 271149..271370
/gene="lpxD"
/locus_tag="CTDLC_0243"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:218175"
misc_feature 271428..272039
/gene="lpxD"
/locus_tag="CTDLC_0243"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature order(271464..271466,271476..271481,271533..271535,
271572..271574,271578..271580,271584..271586,
271620..271622,271626..271628,271644..271646,
271650..271652,271686..271694,271728..271730,
271740..271742,271746..271748,271752..271754,
271761..271769,271794..271796,271800..271808,
271812..271814,271824..271826,271842..271844,
271848..271850,271860..271868,271896..271898,
271914..271922,271932..271934,271968..271976,
272025..272027,272037..272039)
/gene="lpxD"
/locus_tag="CTDLC_0243"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature order(271650..271658,271800..271802,271812..271814,
271821..271826,271854..271859,271872..271880,
271929..271934,271965..271967)
/gene="lpxD"
/locus_tag="CTDLC_0243"
/note="active site"
/db_xref="CDD:100043"
misc_feature order(271650..271658,271821..271826,271875..271880,
271929..271934)
/gene="lpxD"
/locus_tag="CTDLC_0243"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature order(271800..271802,271812..271814,271854..271859,
271872..271874,271965..271967)
/gene="lpxD"
/locus_tag="CTDLC_0243"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene complement(272144..273340)
/locus_tag="CTDLC_0244"
/db_xref="GeneID:12387728"
CDS complement(272144..273340)
/locus_tag="CTDLC_0244"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812175.1"
/db_xref="GI:385244331"
/db_xref="GeneID:12387728"
/translation="MKFHFPCSEGLIRGFSREFLCCILTDKKIQYPLKNFICVEFIVN
SFFGILPRGIPNVGRLSEVAGENKQSLEEREQDKALKLEKKLLAIRKRIKCFCPQQSE
ISVQAAPLKHTGTFPCSEEELRDISDLFSSLKFFRQQLAQLFFYTPPLNLGWEDFLKF
FFAFEKRELGGILFSAGPFESFDRYLYQVNKARPVPVLIATTVSYALQAYCSYINRAP
FQEKENFFQLGEAVGIFLKERMVSIALMYKEILDLDNKQYSELCRGIQKSQIVQGEVF
HSSTQERDGLNPISVNYDLMGTIAALSVNIDRSCLRFSGSHIFHDDEMAIETLHKGGD
VFTFSSLAEFQFSEKRLLHLVSTGRVCPEIIRKKLIKVLLLKKKALCKPFCRHIQITS
ETAQLN"
gene 273562..274584
/gene="pdhA"
/locus_tag="CTDLC_0245"
/db_xref="GeneID:12387729"
CDS 273562..274584
/gene="pdhA"
/locus_tag="CTDLC_0245"
/EC_number="1.2.4.1"
/codon_start=1
/transl_table=11
/product="Pyruvate dehydrogenase E1 component alpha
subunit"
/protein_id="YP_005812176.1"
/db_xref="GI:385244332"
/db_xref="GeneID:12387729"
/translation="MHPLTLNIASEETTEARVFHVIENFGNSFCIDLLKKMLLIREFE
IRGEEAYLEGLVGGFYHSYIGQEAVATAAIACTGKDHWFFSSYRCHGVALLLDIPLRQ
LAAELLGKETGCALGRGGSMHMCGDRLPGGFGIVGGQIPLAAGAAFSMKYQNSSSISM
CFIGDGAVAQGVFHETLNFVALHSLPLMLIIENNGWSMGTALHRAIAKQPIAESQAIS
YGLSSITLNGFDLFNSLIGFREAYHHMQQTGSPIIVEALCSRFRGHSISDPNLYRSKE
EMQCLLKRDPILFAKEWLIRANVLSEDDFKDLRQTSKTAVLEAVAQARLDPEPAVATL
EEGVYA"
misc_feature 273640..274581
/gene="pdhA"
/locus_tag="CTDLC_0245"
/note="pyruvate dehydrogenase E1 component, alpha subunit;
Region: PDH_E1_alph_y; TIGR03182"
/db_xref="CDD:234139"
misc_feature 273658..274530
/gene="pdhA"
/locus_tag="CTDLC_0245"
/note="Thiamine pyrophosphate (TPP) family, E1 of
PDC_ADC_BCADC subfamily, TPP-binding module; composed of
proteins similar to the E1 components of the human
pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain...;
Region: TPP_E1_PDC_ADC_BCADC; cd02000"
/db_xref="CDD:238958"
misc_feature order(273730..273732,273886..273888,273961..273966,
274057..274059,274063..274074,274081..274083,
274093..274095,274105..274107,274150..274161,
274204..274206,274219..274221,274372..274374)
/gene="pdhA"
/locus_tag="CTDLC_0245"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:238958"
misc_feature order(273820..273825,273961..273963,273967..273969,
274051..274062,274141..274143,274147..274149,
274351..274353)
/gene="pdhA"
/locus_tag="CTDLC_0245"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:238958"
misc_feature order(273946..273948,273952..273954,273958..273960,
273973..273975,273982..273987,273994..273999,
274003..274008,274015..274017,274072..274077,
274093..274098,274105..274107)
/gene="pdhA"
/locus_tag="CTDLC_0245"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238958"
misc_feature order(274336..274356,274360..274362,274363..274389,
274411..274419)
/gene="pdhA"
/locus_tag="CTDLC_0245"
/note="phosphorylation loop region [posttranslational
modification]"
/db_xref="CDD:238958"
gene 274577..275563
/gene="pdhB"
/locus_tag="CTDLC_0246"
/db_xref="GeneID:12387730"
CDS 274577..275563
/gene="pdhB"
/locus_tag="CTDLC_0246"
/EC_number="1.2.4.1"
/codon_start=1
/transl_table=11
/product="Pyruvate dehydrogenase E1 component beta
subunit"
/protein_id="YP_005812177.1"
/db_xref="GI:385244333"
/db_xref="GeneID:12387730"
/translation="MPNFVTLEIREAIRQAIDEEMTRDPNVCILGEEVAEYNGAYKVT
KNLLDKWGPTRVIDTPISEAAFSGIGIGAALTGLRPIIEFMSWNFSLVAADQIISHAA
KMYYMTGGKFAVPIVFRGANGAAAQVSCQHSHCIEALYANIPGLIVIAPSTPADAKGL
LKSAIRDNNPVLFLENELDYNLKGEVPSEEYLIPIGKARIVQEGKDLTIISHSRMVSI
VEQAAKTAKQRWGLSIETIDLRTIKPLDVATLLTSVKKTGNCLVVEEGHYFCGISSEV
ITTITEHIFDYLDHPPLRVCQKETPMPYNKTLEMATLPNINRILDAIEKIMR"
misc_feature 274592..275560
/gene="pdhB"
/locus_tag="CTDLC_0246"
/note="Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, beta
subunit [Energy production and conversion]; Region: AcoB;
COG0022"
/db_xref="CDD:223101"
misc_feature 274607..275107
/gene="pdhB"
/locus_tag="CTDLC_0246"
/note="Pyrimidine (PYR) binding domain of the beta
subunits of the E1 components of human pyruvate
dehydrogenase complex (E1- PDHc) and related proteins;
Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
/db_xref="CDD:132919"
misc_feature order(274649..274651,274655..274657,274673..274675,
274739..274741,274748..274750,274754..274771,
274778..274783,274787..274795,274850..274852,
274859..274864,274889..274894,274958..274960,
274967..274969,275012..275017,275078..275083)
/gene="pdhB"
/locus_tag="CTDLC_0246"
/note="alpha subunit interface [polypeptide binding];
other site"
/db_xref="CDD:132919"
misc_feature order(274670..274672,274757..274759,274763..274765,
274841..274843,274850..274852)
/gene="pdhB"
/locus_tag="CTDLC_0246"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132919"
misc_feature order(274673..274675,274748..274750,274754..274765,
274847..274852,274856..274858,274871..274873,
274883..274885,274892..274894,274958..274960,
274964..274969,274991..274993,274997..275002,
275006..275008)
/gene="pdhB"
/locus_tag="CTDLC_0246"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:132919"
misc_feature 275162..275521
/gene="pdhB"
/locus_tag="CTDLC_0246"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:217227"
gene 275568..276857
/gene="pdhC"
/locus_tag="CTDLC_0247"
/db_xref="GeneID:12387731"
CDS 275568..276857
/gene="pdhC"
/locus_tag="CTDLC_0247"
/EC_number="2.3.1.12"
/codon_start=1
/transl_table=11
/product="Dihydrolipoamide acetyltransferase component of
pyruvate dehydrogenase complex"
/protein_id="YP_005812178.1"
/db_xref="GI:385244334"
/db_xref="GeneID:12387731"
/translation="MVSLLKMPKLSPTMEIGILVKWHKKAGDEIHFGDVLLEISTDKA
VLEHTASEDGWLLEILVEEGTKTPIGTPIAVFSTEQNAQYDLKQLLPLEGTVVTDAAT
EASPKNSAQTDSQYTSGPSITMMGFRPEPPLAIPLTIKHSNDPVLASPLAKKLAKEQN
LDLSGVTGSGPGGRIVKKDLEKAPPLRIAGFGYPEAPNVNPGSYIEEPLSPVREVISK
RLQAAKTFIPHFYVRQRIYASPLLALLKELQEQNIKLSINDCIVRACALALKEFPEIN
SGFNSVDNKIIRFSTIDISIAVAIPDGVIAPIVRCADRKNIGMISAEIKGLATKAKQQ
SLAEEEYKGGSFCVSNLGMTGISDFTAILNPPQAAILAVGSVEEQPVVLNGELAVGLT
CMLTLSVDHRVIDGYPAAMFMKRLQRLLEAPSVLLLN"
misc_feature 275577..276851
/gene="pdhC"
/locus_tag="CTDLC_0247"
/note="pyruvate dehydrogenase complex dihydrolipoamide
acetyltransferase, long form; Region: PDHac_trf_mito;
TIGR01349"
/db_xref="CDD:233367"
misc_feature 275580..275795
/gene="pdhC"
/locus_tag="CTDLC_0247"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(275664..275666,275685..275702,275712..275714)
/gene="pdhC"
/locus_tag="CTDLC_0247"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 275694..275696
/gene="pdhC"
/locus_tag="CTDLC_0247"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 276003..276113
/gene="pdhC"
/locus_tag="CTDLC_0247"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature 276225..276851
/gene="pdhC"
/locus_tag="CTDLC_0247"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:215782"
gene complement(276884..279328)
/gene="glgP"
/locus_tag="CTDLC_0248"
/db_xref="GeneID:12387732"
CDS complement(276884..279328)
/gene="glgP"
/locus_tag="CTDLC_0248"
/EC_number="2.4.1.1"
/codon_start=1
/transl_table=11
/product="Glycogen phosphorylase"
/protein_id="YP_005812179.1"
/db_xref="GI:385244335"
/db_xref="GeneID:12387732"
/translation="MYFDRTKINVESMKQAILERVYCGVVQTPQSASTRDIFTAVAKT
VLEWMAKGWLKTQSSYYDNDVKRVYYISMEFLLGRSLKSNLLNLGLLDLVKEALFDLG
YDFDQLVEMEHDAGLGNGGLGRLAACFLDSMATLEIPAYGYGLRYDYGIFDQKIENGF
QVESPDEWLRYGNPWEICRGEYLYPVHFYGKVKHSIDSRGRDVAELVDSQEVLAMAYD
VPVPGFNNDAVNSLRLWQAQSRHGFEFSYFNHGNYIRAIEDIALAGNITRVLYPNDSI
SEGQELRLKQEYFLVSATIQDILRRYTKTHLSLDKLSEKVSVQLNDTHPALGIAEMMR
LLVDREELDWDVAWDATTKIFNYTNHTILPEALERWSLDLFSKVLPRHLEIIYEINAR
WLAKVSQKYPGDNDKRRALSIIEEGSSKFVNMANLAVVGTNKVNGVSTFHSQLIKSTL
FKDFVEFFPDKFINVTNGITPRRWLALSNKKLSSLLNRTIGTEYLTNLTHLHKVIPLA
EDSGFREEWRNIKIQNKEELAARIYKELGVTVNPQSIFDCHIKRIHEYKRQLMNILRV
IYFYNEIRNGSGEIVPTTVIFGGKAAPGYAMAKLIIKLINNVAAVVNNDPKVNDQLKV
IFWPNYRVSLAEAIIPATDLSEQISTAGMEASGTGNMKFALNGALTIGTMDGANIEMA
EHIGKEHMFIFGLLEEEISELRKEYYPQGICNANPTIQEILDMIAQAKFSQEDKDLFK
PIVNRLLNEGDPFFVLADLEAYINTQNRVASLFKQPEEWTKKSIYNVGGIGFFSSDRS
IAEYASNIWNVSRPTS"
misc_feature complement(276902..279289)
/gene="glgP"
/locus_tag="CTDLC_0248"
/note="This is a family of oligosaccharide phosphorylases.
It includes yeast and mammalian glycogen phosphorylases,
plant starch/glucan phosphorylase, as well as the
maltodextrin phosphorylases of bacteria. The members of
this family catalyze the breakdown of...; Region:
GT1_Glycogen_Phosphorylase; cd04300"
/db_xref="CDD:99996"
misc_feature complement(order(278501..278503,278510..278512,
278792..278794,279185..279193,279260..279268,
279272..279277,279281..279283,279287..279289))
/gene="glgP"
/locus_tag="CTDLC_0248"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99996"
misc_feature complement(276902..279280)
/gene="glgP"
/locus_tag="CTDLC_0248"
/note="glycogen/starch/alpha-glucan phosphorylases;
Region: P_ylase; TIGR02093"
/db_xref="CDD:233722"
misc_feature complement(order(277343..277345,277352..277363,
277367..277369,277433..277438,277538..277540,
277544..277546,277559..277561,277658..277669,
277673..277678,277907..277909,277928..277930,
278234..278236,278246..278251,278357..278359,
278363..278365,278480..278482,278501..278503,
278507..278509,278516..278518,278963..278971,
279101..279103,279107..279109))
/gene="glgP"
/locus_tag="CTDLC_0248"
/note="active site pocket [active]"
/db_xref="CDD:99996"
gene 279484..279834
/locus_tag="CTDLC_0249"
/db_xref="GeneID:12387733"
CDS 279484..279834
/locus_tag="CTDLC_0249"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812180.1"
/db_xref="GI:385244336"
/db_xref="GeneID:12387733"
/translation="MGIKPHDHGCWGSRGNIFTLQDLDTQQANQSAAASSSSVLKSEC
TAKVARYALGFLFGLGFILSIVTFIAAAATLPLGTVTILIMVTQAAFAAALAFKLYDL
FKHDVPTCSITSKA"
gene complement(279888..281258)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/db_xref="GeneID:12387734"
CDS complement(279888..281258)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="Chromosomal replication initiator protein"
/codon_start=1
/transl_table=11
/product="ATPase DnaA"
/protein_id="YP_005812181.1"
/db_xref="GI:385244337"
/db_xref="GeneID:12387734"
/translation="MRAWEEFLLLQEKEIGVDTVNKWLRSLKVLCFDACNLYLEAKDS
FQVTWFEEHIRHKVKASLINNNGKPIRVRVTSLDKSTPFKETQIQQEKTAYFTMKYGD
IDPNMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAA
VGGLREAGVKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGA
TQEEFFHTFNSLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLIREGLK
SFLERRTEKLNIRIEETALDFLIQALSSHVKSLLHALTTLAKRVAYKKLSHQMLYQGD
IEALLHDVLQAAESIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCR
QKLSLSYVKIGEVFSRDHSTVISSIRAISQKLEEDDRECDVSRAIQELTKRLSSAYQS
LDFIED"
misc_feature complement(279921..281258)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="chromosomal replication initiation protein;
Provisional; Region: PRK12422"
/db_xref="CDD:183521"
misc_feature complement(281100..281249)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:221153"
misc_feature complement(280473..280892)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(280797..280820)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(280533..280535,280635..280637,
280794..280817))
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(280632..280649)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(280497..280499)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(279927..280193)
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature complement(order(280002..280007,280014..280016,
280023..280037,280059..280067,280083..280085,
280104..280109,280131..280133))
/gene="dnaA"
/locus_tag="CTDLC_0250"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene complement(281335..283698)
/gene="yidC"
/locus_tag="CTDLC_0251"
/db_xref="GeneID:12387735"
CDS complement(281335..283698)
/gene="yidC"
/locus_tag="CTDLC_0251"
/codon_start=1
/transl_table=11
/product="60 kDa inner membrane protein YIDC"
/protein_id="YP_005812182.1"
/db_xref="GI:385244338"
/db_xref="GeneID:12387735"
/translation="MRMNKRTLLFVSLVSAAFLGCQIFFGYRDLKSCQDLAEKQRAIS
EQILASTEQLSVVPWTASLEESESVNQYAIRLGNRLLLLTKGGSHPEVYSRGTYWSLI
EQTSTFGGILVSLYGETGQEVLSKGSSVYLPNQRDAFPVLVAEFRSNQEPLVFLGEYK
DGKIANKAGAIYGTSLVFLNTGNGFVPLGIYNSKEECVESLDLPMARAVVFADKENPT
ASGSYYMLSNEYMQIVVSQESGAIEGINLPFASDQEENKSIVNEIGFDRELAINSPSE
ASFPGVETIDSQRQNIANVVGGYYPLLRRGTLSDVKKRVPAQYQALNIVSGRELASPV
ATGFRVVSFDNKTLILESGDGGIRRTYSLGEQPYAFELEIQTTQGREDLWITSGVPEV
EIMSNAFVPAVKYHAVKKNKSDLFNVKLPKAKDSLLVRNNATPQWILNSNGYFGVILT
PRIPIPAGYASSFIPGNVVPTRLSQLPPKDQAYPASKYPGYTAMLPLPKEAGRYQFMV
YAGPLADPTLKALDRANANSKGETPEYVDAIAFRGFFSFITEPFAALLFVIMKFFKFL
TGSWGISIILLTIVLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKREPKRAQMEI
MALYKMNKVNPITGCLPLLIQIPFLIAMFDLLKSSFLLRGASFIPGWIDNLTAPDVLF
SWETPIWFIGKEFHLLPILLGVVMFAQQKISAVKRSGPASDQQRQQEAMGTMMALLFT
FMFYNFPSGLNIYWFSSMLLGVIQQWVTNKILDEKHLQHEVIINKKR"
misc_feature complement(281338..283692)
/gene="yidC"
/locus_tag="CTDLC_0251"
/note="putative inner membrane protein translocase
component YidC; Provisional; Region: PRK01001"
/db_xref="CDD:179202"
misc_feature complement(281389..281994)
/gene="yidC"
/locus_tag="CTDLC_0251"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:211846"
gene complement(284008..284826)
/gene="lgt"
/locus_tag="CTDLC_0252"
/db_xref="GeneID:12387736"
CDS complement(284008..284826)
/gene="lgt"
/locus_tag="CTDLC_0252"
/EC_number="2.4.99.-"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_005812183.1"
/db_xref="GI:385244339"
/db_xref="GeneID:12387736"
/translation="MIHWDQSRTLLSFPRVGLHLSWYGILFSLGIFLSSFSGIKLATA
LCKDREEKKELRTSLENFALGALLAIIIGARLAYVLFYGGSFYFENPSEIIKIWKGGL
SSHGAVISVVIWAAVFSRLHIRKLPMLSVTYICDLCGAVFGCAALLIRVGNFMNQEIL
GTPTSMPWGVIFPNGGGQIPRHPVQLYEGLGYLVLSCILYRLCYRGVIRLGSGYSAAG
ALIGVAVIRFCAEFFKTHQGAWLGEENILTIGQWLSIPMIFLGVGIIWIASKKK"
misc_feature complement(284011..284706)
/gene="lgt"
/locus_tag="CTDLC_0252"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK00052"
/db_xref="CDD:234599"
gene 285077..285724
/locus_tag="CTDLC_0253"
/db_xref="GeneID:12387737"
CDS 285077..285724
/locus_tag="CTDLC_0253"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812184.1"
/db_xref="GI:385244340"
/db_xref="GeneID:12387737"
/translation="MRKFWLLASFGLLSLTTTTLSSCAVSNSGSYNARLYTKGSKAKG
VVAMLPVFYRTEKSAELLPWNLQAEFSEEISRRLHSSDKLLLIKHHASAGVAAQFFSP
TPNISPELATQLLPAEFVVAAEILEQKTTEDVLNPSISASVRVRVFDIRHNKVSMIYQ
EILDASQSLASGSNDYHRYGWRSKNFDSTPMGLMHQRLFREIVARVEGYVCANYS"
gene 285728..286498
/locus_tag="CTDLC_0254"
/db_xref="GeneID:12387738"
CDS 285728..286498
/locus_tag="CTDLC_0254"
/codon_start=1
/transl_table=11
/product="CAAX amino terminal protease"
/protein_id="YP_005812185.1"
/db_xref="GI:385244341"
/db_xref="GeneID:12387738"
/translation="MVGLGLLLVFVGISIFLVNGFFVWPKPEKHTRLPFSLVCLGAVL
LLLPALLPTGDPLSSISKVSFHGIFVFSAFLFLLLGLPAPITQSILYAGRTTSSTPWL
LAIRAGARMWVITITATQILARLLQLVLPLILPKQLFQEQVITEEIREQLSTRPDLLY
IFCIAMLIPIAEEIFFRGILQTFFKNTFSRSKAVVTSSLIFAITHIEASLGSFIFVPT
LFVFSLCAGFIYEKVRHIAAPVTLHILFNSCQLALLSL"
misc_feature 286199..286468
/locus_tag="CTDLC_0254"
/note="CAAX protease self-immunity; Region: Abi;
pfam02517"
/db_xref="CDD:217080"
gene complement(286706..287089)
/locus_tag="CTDLC_0255"
/db_xref="GeneID:12387739"
CDS complement(286706..287089)
/locus_tag="CTDLC_0255"
/codon_start=1
/transl_table=11
/product="mazG-related protein"
/protein_id="YP_005812186.1"
/db_xref="GI:385244342"
/db_xref="GeneID:12387739"
/translation="MEEKGILQLVEISRAMALQGVCPWTNLQSVESMLQYIAGECQEL
ADAVQENKASLEIASEAGDVLTLVLTLCFLLEREGKLKAEEVFVEALAKLRRRSPHVF
DPHNQISLEQAEEYWARMKQQEKIS"
misc_feature complement(286727..287068)
/locus_tag="CTDLC_0255"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) N-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs; Region:
NTP-PPase_MazG_Nterm; cd11528"
/db_xref="CDD:212135"
misc_feature complement(order(286808..286813,286817..286825,
286829..286843,286850..286852,286877..286879,
286886..286888,286892..286909,286916..286921,
286931..286933,286946..286948,286955..286957,
286964..286969,286976..286981,286988..286990,
286997..287002,287054..287056,287063..287068))
/locus_tag="CTDLC_0255"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212135"
misc_feature complement(order(286901..286903,286910..286912,
286961..286963,286970..286972))
/locus_tag="CTDLC_0255"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212135"
gene 287278..288522
/locus_tag="CTDLC_0256"
/db_xref="GeneID:12387740"
CDS 287278..288522
/locus_tag="CTDLC_0256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812187.1"
/db_xref="GI:385244343"
/db_xref="GeneID:12387740"
/translation="MFSSAIVILTAIFVLCSGFVSLSHIALFSLPSSLIAHYSHSKNR
QLRQIANLMAYPNHLLMTLVFFDIGINIGVQNCIATLVGDSASLLLTVGVPLALTLVL
GEIVPKVIAIPYNARIAKIVTPIIFASTKSFRPIFDWAISGINFIVQKMLARQESDFI
QPQELKEVLRSCKDFGVVNHEESRLLFGYLSMEEGSIKERMTPKQEIIFYDVLTPIEN
LYKLFSGPKQSYSKVLVCKGGLQNLLGVCSAKLLLLYKEKLQSAEELLPLLRKPHYIP
ETVSAKTALYHLAGEDCGLGIIIDEYGSIEGLITQNDLFKIVSDGVAHNRPSFKQFAH
SDKNVVIAAGTYELSDFYDLFGVDLPTTANCVTIGGWLTEQLGEIPETGTKFAWGQFV
FQILDAAPNCVKRVYIRKTHGN"
misc_feature 287278..288516
/locus_tag="CTDLC_0256"
/note="Hemolysins and related proteins containing CBS
domains [General function prediction only]; Region: TlyC;
COG1253"
/db_xref="CDD:224173"
misc_feature 287290..287823
/locus_tag="CTDLC_0256"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:216595"
misc_feature 287893..288219
/locus_tag="CTDLC_0256"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:239963"
misc_feature 288283..288507
/locus_tag="CTDLC_0256"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:215020"
gene 288512..289726
/locus_tag="CTDLC_0257"
/db_xref="GeneID:12387741"
CDS 288512..289726
/locus_tag="CTDLC_0257"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812188.1"
/db_xref="GI:385244344"
/db_xref="GeneID:12387741"
/translation="METNSPFFWLGVNLLCIFVQGFFSMMEMACISFNRVRLQYYLTK
SNKKASYINFLVRRPYRLFGTVMLGVNIALQIGSESSRTCYKLLGISPEYAPATQIIL
VVIFAELIPLAISRKIPEKIALKGAPILYFAHYLFYPLIQCVGGITNMIYFILNIKEE
TLHSTLSRDELQKTLETHHEEHDFNVIATNIFSLSATSVEQVCQYLDQIPILSATASV
RDVCQLVRRHRLDFVPVYHKVKKNVVGIAFPKNLINRNPSDPVVPYLSSPWFITAKSK
LIHAIQEFRKNSSNVAIVLNNNGEPMGVLGLHTVFKTLFNTRNIAQLKPKPTSLIERT
FSGNTPLSEIENELDIIFMDNDCTTIEQLMLKLLDTPPEVGASIIINDLLLEVKEISL
YGIKTVAIKDTL"
misc_feature 288521..289714
/locus_tag="CTDLC_0257"
/note="Hemolysins and related proteins containing CBS
domains [General function prediction only]; Region: TlyC;
COG1253"
/db_xref="CDD:224173"
misc_feature 288533..289066
/locus_tag="CTDLC_0257"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:216595"
misc_feature 289145..289426
/locus_tag="CTDLC_0257"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:239963"
misc_feature 289514..289714
/locus_tag="CTDLC_0257"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:215020"
gene complement(289730..290854)
/gene="nifS"
/locus_tag="CTDLC_0258"
/db_xref="GeneID:12387742"
CDS complement(289730..290854)
/gene="nifS"
/locus_tag="CTDLC_0258"
/codon_start=1
/transl_table=11
/product="NifS protein"
/protein_id="YP_005812189.1"
/db_xref="GI:385244345"
/db_xref="GeneID:12387742"
/translation="MTIYLDTNASALLEPGVLMCLHSLFIGEGGFGNPSSVHSFGKKT
KKLVKETSTLIEKALGFSHCRVIYTSGATESLNLAIQNIPTGSHVITSSMEHPAVIEP
LKQAKLSVTYLDPIPGECVVSLEQIKEAVQSDTSAIVLGWVNSEVGVRIDLEAIAEFA
KERQLLLIVDATAIVGKEVIHIPEGVSMVAFSGHKFHALSGIGVLLTSPKIKISPIIS
GGGQQGGIRSGTEHIHGIASLRYIFSKLLVEQPAIAQTMRSYRDLFESRIQETFPECI
VHCQDKPRVSNLSAIAFPGLEGEVMQIALDLEGVACGYGSACSSGATTVFKSLTVMKV
PQDLAVATLRFSFSYLLSEEEILTAARRVIRVVKHLQQYA"
misc_feature complement(289733..290854)
/gene="nifS"
/locus_tag="CTDLC_0258"
/note="Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and metabolism];
Region: NifS; COG1104"
/db_xref="CDD:224029"
misc_feature complement(289754..290848)
/gene="nifS"
/locus_tag="CTDLC_0258"
/note="cysteine desulfurase NifS; Region: FeS_nifS;
TIGR03402"
/db_xref="CDD:132443"
misc_feature complement(order(290270..290272,290279..290281,
290336..290338,290345..290347,290429..290431,
290627..290629,290636..290641))
/gene="nifS"
/locus_tag="CTDLC_0258"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature complement(290270..290272)
/gene="nifS"
/locus_tag="CTDLC_0258"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(290860..291624)
/gene="yloO"
/locus_tag="CTDLC_0259"
/db_xref="GeneID:12387743"
CDS complement(290860..291624)
/gene="yloO"
/locus_tag="CTDLC_0259"
/EC_number="3.1.3.16"
/codon_start=1
/transl_table=11
/product="Protein phosphatase 2C"
/protein_id="YP_005812190.1"
/db_xref="GI:385244346"
/db_xref="GeneID:12387743"
/translation="MGGEGVMIVADFEYFGLSDVGLVRHNNEDFWQVNYDSQLIAIAD
GMGGHRAGEVASYEAVGNLMQLVDLHKVDLERFGDEQYKESIKTIVSEINLLIYRQGL
SNEQFKGMGTTLSCMQFRRGKAWLFHVGDCRVYRLRNKMLERLTEDHSLANHLASRYG
LSKQSVKRYPGRNVLTNVLGSRPHVSLDIREMSYEKEDLFVFCSDGLTSAVSDHDMLD
ILTQTTTLEEGGNILISLANSRGGRDNATVILVRMR"
misc_feature complement(290869..291585)
/gene="yloO"
/locus_tag="CTDLC_0259"
/note="Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence...; Region: PP2Cc; cd00143"
/db_xref="CDD:29062"
misc_feature complement(290944..291573)
/gene="yloO"
/locus_tag="CTDLC_0259"
/note="Sigma factor PP2C-like phosphatases; Region:
PP2C_SIG; smart00331"
/db_xref="CDD:197658"
misc_feature complement(order(290893..290895,291010..291012,
291487..291495,291538..291543,291553..291555))
/gene="yloO"
/locus_tag="CTDLC_0259"
/note="active site"
/db_xref="CDD:29062"
gene 291929..292420
/locus_tag="CTDLC_0260"
/db_xref="GeneID:12387744"
CDS 291929..292420
/locus_tag="CTDLC_0260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812191.1"
/db_xref="GI:385244347"
/db_xref="GeneID:12387744"
/translation="MTTWTLNHNNLTKFLTHAQLEPSLERESGLIYITVPAGEHELPL
FFVIRNEGEVLQLVCYFPYQIQQNQRDTTARLLHLVNRDIDIPGFGMDEEQNIIFYRL
VIPCLKGEINEDLLRVYIDTIKLICDSFFHAIGLISTGNMDLDELKKQAKLENNQSDQ
LEP"
misc_feature 291929..292405
/locus_tag="CTDLC_0260"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5465"
/db_xref="CDD:227752"
gene 292429..293127
/gene="dnaQ_1"
/locus_tag="CTDLC_0261"
/db_xref="GeneID:12387745"
CDS 292429..293127
/gene="dnaQ_1"
/locus_tag="CTDLC_0261"
/EC_number="2.7.7.7"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="YP_005812192.1"
/db_xref="GI:385244348"
/db_xref="GeneID:12387745"
/translation="MPALIFYDTETTGTQIDKDRIVELAAYNGTTSESFQTLVNPEIP
IPAEATKIHGITTAEVADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRR
HGLSEPQLRTIDSLKWAKKYRTDLPQHSLQYLRQVYGFEENQAHRALDDVITLYRVFS
ALVGDLSPDQIYDLLNETCHPRIFKMPFGKYKGKPLSEVPSSYIAWLQKGDYLLQPEN
KEIKAAIEAYQQLK"
misc_feature 292429..293124
/gene="dnaQ_1"
/locus_tag="CTDLC_0261"
/note="DNA polymerase III subunit epsilon; Validated;
Region: PRK06309"
/db_xref="CDD:180524"
misc_feature 292441..292905
/gene="dnaQ_1"
/locus_tag="CTDLC_0261"
/note="DEDDh 3'-5' exonuclease domain family; Region:
DEDDh; cd06127"
/db_xref="CDD:176648"
misc_feature order(292450..292461,292465..292467,292684..292689,
292693..292695,292699..292704,292864..292866,
292879..292881)
/gene="dnaQ_1"
/locus_tag="CTDLC_0261"
/note="active site"
/db_xref="CDD:176648"
misc_feature order(292450..292461,292465..292467,292684..292689,
292693..292695,292699..292701,292864..292866,
292879..292881)
/gene="dnaQ_1"
/locus_tag="CTDLC_0261"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176648"
misc_feature order(292450..292452,292456..292458,292702..292704,
292864..292866,292879..292881)
/gene="dnaQ_1"
/locus_tag="CTDLC_0261"
/note="catalytic site [active]"
/db_xref="CDD:176648"
misc_feature 292981..>293058
/gene="dnaQ_1"
/locus_tag="CTDLC_0261"
/note="Protein of unknown function (DUF3820); Region:
DUF3820; cl01411"
/db_xref="CDD:242489"
gene 293124..293894
/locus_tag="CTDLC_0262"
/db_xref="GeneID:12387746"
CDS 293124..293894
/locus_tag="CTDLC_0262"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812193.1"
/db_xref="GI:385244349"
/db_xref="GeneID:12387746"
/translation="MTFSAAFSPCPNDIFLFRSFLEKHKGFPSLRQIMIADISSLNYY
ALETRFPLIKISASLYPQIADSYDVLNVGTTLGYKIGPLILSRQLDSPLKSLATPGET
TTAHALCRLFYPRAELVPMKYHEIIPAILSNRVDGGAVIHEERFSFPKDLCIVEDLGQ
LWEKTWHLPLPLGCIVISKKVSDDDSYLLNHALQESLKKSLTDSALAIQKASEYSRDK
NPTTIQHFIDTYVTEETFNLSSIGRQAFSTLWTACRNV"
misc_feature 293124..293879
/locus_tag="CTDLC_0262"
/note="Predicted periplasmic solute-binding protein
[General function prediction only]; Region: COG2107"
/db_xref="CDD:225018"
gene 293887..294477
/locus_tag="CTDLC_0263"
/db_xref="GeneID:12387747"
CDS 293887..294477
/locus_tag="CTDLC_0263"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812194.1"
/db_xref="GI:385244350"
/db_xref="GeneID:12387747"
/translation="MFKLLLIFADPAEAARTLSLFPFSLNKENFYTYHTENVLLDVMV
LKTWGYRGVVQALSPPPSGYDLWINAGFAGAGNPNIPLLKTYTITSVKELTPTTSVEE
ELEVTPIPRLPLAQLTSVRSPYRDGFHEHLQLVDMEGFFIAKQASLVACPCSMIKVSS
DYTTREGQDFLKNNKVKLSQKLAEAIFPIYSSFIDV"
misc_feature <294043..294369
/locus_tag="CTDLC_0263"
/note="nucleosidase; Provisional; Region: PRK05634"
/db_xref="CDD:235538"
gene complement(294498..296438)
/gene="msbA"
/locus_tag="CTDLC_0264"
/db_xref="GeneID:12387748"
CDS complement(294498..296438)
/gene="msbA"
/locus_tag="CTDLC_0264"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_005812195.1"
/db_xref="GI:385244351"
/db_xref="GeneID:12387748"
/translation="MKLLLKAILRHKKHLVLFGFSLLSILGLTITSQAEIFSLGLIAK
TGPDTFLLFGKQEGASLVKRKELSKDQLLEQWDNIVGEGDTLSLPQANAYIAKHSGGS
QSITKRLSAYLSGCFDFSRLQCLALFLVVVAILKSTTLFFQRFLAQLIAIRVSCSLRK
DYFLALQTLPMTFFHAHDMGNLSSRVIADSSMIALAINALMVNYIQAPITMTLALVVC
LSISWKFCACVCLAFPIFILPIVIIAKKVKALAKRIQKSQDHSAAALLDFLLGILTVK
VFRTEQFSFSKYCQKNDEIARLEERSAAYSLIPRPLLHTIASLFFALVIMIGLYHFHI
PPEELVVFCGLLYLIYDPIKKFADENANIMWGCAAAERFYEVLDLAKQQSNVSEKLNE
FQGLQHSIQFCNVSFGYVEDSPVLSDFNLVLKKGEAIGIVGPTGSGKSTIAKLLPRLY
EVSHGELLIDSLPIRSYCKNSLRKHIGCVLQHPFLFYDTVWNNLTCGRTFSEEEVFHA
LKQAHAYEFVSKMPQGVHSLLEESSKNLSGGQQQRLTIARALLHNTSILLLDEATSAL
DAISENYVKEIVGQLKGRCTQIIIAHKLSTLEYVDRIVYLEQGKKIAEGTKEELLDSC
PAFQRMWVLSGAKDWELNAVVK"
misc_feature complement(294528..296090)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(295440..296066)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature complement(294546..295241)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(295119..295142)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(294663..294665,294756..294761,
294996..294998,295116..295124,295128..295133))
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(294996..295007)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(294804..294833)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(294756..294773)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(294738..294749)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(294657..294677)
/gene="msbA"
/locus_tag="CTDLC_0264"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(296404..297378)
/gene="accA"
/locus_tag="CTDLC_0265"
/db_xref="GeneID:12387749"
CDS complement(296404..297378)
/gene="accA"
/locus_tag="CTDLC_0265"
/EC_number="6.4.1.2"
/codon_start=1
/transl_table=11
/product="Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha"
/protein_id="YP_005812196.1"
/db_xref="GI:385244352"
/db_xref="GeneID:12387749"
/translation="MELLPHEKQVVEYEKTIAEFKEKNKENSLLSSSEIQKLDKRLDR
LKEKIYSDLTPWERVQICRHPSRPRTVNYIEGMCEEFVELCGDRTFRDDPAVVGGFAK
IQGQRFMLIGQEKGCDTKSRMHRNFGMLCPEGFRKALRLAKMAEKFGLPIIFLVDTPG
AFPGLTAEERGQGWAIATNLFELARLATPIIVIVIGEGCSGGALGMAIGDVVAMLEHS
YYSVISPEGCASILWKDPKKNSDAAAMLKMHGEDLKGFAIVDAVIKEPIGGAHHNPAA
TYRSVQEYVLQEWLKLKDLPVEELLEKRYQKFRTIGLYETSSESDSEA"
misc_feature complement(296428..297378)
/gene="accA"
/locus_tag="CTDLC_0265"
/note="acetyl-CoA carboxylase carboxyltransferase subunit
alpha; Validated; Region: PRK05724"
/db_xref="CDD:235580"
misc_feature complement(296437..297360)
/gene="accA"
/locus_tag="CTDLC_0265"
/note="acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional; Region: accA; CHL00198"
/db_xref="CDD:214393"
gene complement(297511..298788)
/locus_tag="CTDLC_0266"
/db_xref="GeneID:12387750"
CDS complement(297511..298788)
/locus_tag="CTDLC_0266"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812197.1"
/db_xref="GI:385244353"
/db_xref="GeneID:12387750"
/translation="MLSIVESGFSVSKLDSKFPQDYFLPLDVFLLTMLVESQLGLEDV
LEAFSERNFDIQSKSFIESFQDKKLRRTVIQRFLHHPLLHIHDIARAAYLLAALEEGV
DLGYQFLCMHQTQSGAALLFRRAGFLWGGLPYPGEHAEMAMLLSRIAEFYDTSYEQVQ
KMIAFQHALFSHERNIFPALWSQEGSRSNQEKTAVSKLLFCQKEARIEDQFTLTDMSL
GFWMRRTPSFSAYVSGSGCKSGVGAFLIGDVGVLNYGPCVGDPGECLGFGLCGQVKEF
SCQEKDEEVSISFAGALSQPSSRRTGFSYLQDALFSTNSCYCIDITEQKCHVASSLDR
ENQDAFFAIFCKGSQCQVCNGPKLRTGSPDSYKGPAYDVLIKGEKETVRILSSSPHME
IFSLQGKDRFWGSNFLINLPYTQNSINILFEKA"
gene complement(298810..299112)
/gene="ihfA"
/locus_tag="CTDLC_0267"
/db_xref="GeneID:12387751"
CDS complement(298810..299112)
/gene="ihfA"
/locus_tag="CTDLC_0267"
/codon_start=1
/transl_table=11
/product="Integration host factor beta-subunit"
/protein_id="YP_005812198.1"
/db_xref="GI:385244354"
/db_xref="GeneID:12387751"
/translation="MATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVQGDR
LEFRDFGVLQVVERKPKVGRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPTKSS"
misc_feature complement(298843..299100)
/gene="ihfA"
/locus_tag="CTDLC_0267"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature complement(order(298852..298854,298861..298863,
298867..298869,298879..298881,298912..298923,
298930..298932,298936..298941,298945..298947,
298957..298959,298966..298971,298975..298977,
298981..298983,299026..299028,299092..299100))
/gene="ihfA"
/locus_tag="CTDLC_0267"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
misc_feature complement(order(298858..298860,298864..298866,
298876..298881,298948..298950,298963..298968,
298975..298989,298999..299004,299011..299016,
299023..299025,299065..299067,299077..299079,
299086..299088,299095..299100))
/gene="ihfA"
/locus_tag="CTDLC_0267"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
gene complement(299332..300111)
/gene="amiA"
/locus_tag="CTDLC_0268"
/db_xref="GeneID:12387752"
CDS complement(299332..300111)
/gene="amiA"
/locus_tag="CTDLC_0268"
/EC_number="3.5.1.28"
/codon_start=1
/transl_table=11
/product="N-acetylmuramoyl-L-alanine amidase"
/protein_id="YP_005812199.1"
/db_xref="GI:385244355"
/db_xref="GeneID:12387752"
/translation="MRGIRSSNIRRLSLMIERLCVKPWQPFVNLTLLLLLLTLSSPVS
CFADAAGIPKVSRNELIVIDPGHGGKDEGTADKELRYKEKTLALSIALSVQGCLRRMG
YKTIMTRATDVYVDLSKRAAIANQNKADVFVSIHCNHSSNTSALGTEIYFYNDKNILR
TRKSESLGKSILAFMQKNGALRERKVKEGNFAVIRETTMPAVLVETGFLSNSKERAAL
LDARYRSHLAKGIAEGIHAFILNRQVDKTVSVSSGAKKVHK"
misc_feature complement(299386..299955)
/gene="amiA"
/locus_tag="CTDLC_0268"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:223929"
misc_feature complement(299407..299931)
/gene="amiA"
/locus_tag="CTDLC_0268"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature complement(order(299497..299499,299704..299706,
299863..299865,299911..299913))
/gene="amiA"
/locus_tag="CTDLC_0268"
/note="active site"
/db_xref="CDD:119407"
misc_feature complement(order(299704..299706,299863..299865,
299911..299913))
/gene="amiA"
/locus_tag="CTDLC_0268"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
gene complement(300026..301477)
/gene="murE"
/locus_tag="CTDLC_0269"
/db_xref="GeneID:12387753"
CDS complement(300026..301477)
/gene="murE"
/locus_tag="CTDLC_0269"
/EC_number="6.3.2.13"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase"
/protein_id="YP_005812200.1"
/db_xref="GI:385244356"
/db_xref="GeneID:12387753"
/translation="MHLDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQG
QFCNGNDYSSQAVANGAIAVLSSLYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHL
DVIGITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQK
YFAEMVKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAK
KQFFASLPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADYRADRLKLYSSGSSY
DIWYQGQVFPCETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDP
ILLGPFPVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVS
EHYGFSFVTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVL
VAGKGHEGYQIFKHQTIVFDDREVVCEALAALC"
misc_feature complement(300062..301420)
/gene="murE"
/locus_tag="CTDLC_0269"
/note="UDP-N-acetylmuramyl-tripeptide synthetase; Region:
murE; TIGR01085"
/db_xref="CDD:233265"
misc_feature complement(301193..301414)
/gene="murE"
/locus_tag="CTDLC_0269"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:216373"
misc_feature complement(300587..301156)
/gene="murE"
/locus_tag="CTDLC_0269"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature complement(300236..300496)
/gene="murE"
/locus_tag="CTDLC_0269"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene complement(301800..303743)
/gene="pbp3"
/locus_tag="CTDLC_0270"
/db_xref="GeneID:12387754"
CDS complement(301800..303743)
/gene="pbp3"
/locus_tag="CTDLC_0270"
/codon_start=1
/transl_table=11
/product="Penicillin-binding protein"
/protein_id="YP_005812201.1"
/db_xref="GI:385244357"
/db_xref="GeneID:12387754"
/translation="MNHRRQLTLIVVGVLSLYALLIVRYYKIQICDGERWAVEAANQH
EFRVKDPFQRGTFFANTSLRKGEKEQFHPLAIDVTKFHLCLDAVVIPEEYRDEIARMV
VVMVGEGDYQSIRSEFDRKSRYRKLYVSLDISIRDRILSWWKPYAVKHKIPSNALFFI
SDYQRSYPFGKLLGQVLHTLREIKDEKSGEAFPTGGLEAYFNRLLEGENGERKLLRSP
LNRLDVDKVTKIPRDGSDIYLTIDANVQTIAEQEIALGVLEAKARSGRAIVLNSHTGE
ILALAQYPFFNPREYREYFNCNDRIEDTKVKAVSDVFEPGSIMKPITVAIALLANEEM
QKRAGENLFDPYEPLDVSRRVFPGRQKMPLKDIVSNRYLNMYMAIQKSSNVYMAQLAD
RIVQKLGADWYEQRLQDFGFGKRTGIELPAEAVGLVPSRKRFHKNGSPEWSLSTPYSL
AMGYNLLATSMQMVQAYAVFGNGGFLIRPTLVRKIVSPSGEEKILSSNPKKIRVLSEK
IVADVVRAMRFTTCLGGTGIRAATKGYSSAGKTGTTEKLVDGKYDKKRHIASFIGLTP
IAALSDTAVPLVILVSIDDPAYGVREDRTKNYMGGRCAAPVFSRIASRVLPYLGVPLD
EQLHTYREEVSQLKLLYEEWNRK"
misc_feature complement(301866..303743)
/gene="pbp3"
/locus_tag="CTDLC_0270"
/note="Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane];
Region: FtsI; COG0768"
/db_xref="CDD:223839"
misc_feature complement(303081..303596)
/gene="pbp3"
/locus_tag="CTDLC_0270"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:217689"
misc_feature complement(301911..302951)
/gene="pbp3"
/locus_tag="CTDLC_0270"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:216183"
gene complement(303730..304017)
/locus_tag="CTDLC_0271"
/db_xref="GeneID:12387755"
CDS complement(303730..304017)
/locus_tag="CTDLC_0271"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812202.1"
/db_xref="GI:385244358"
/db_xref="GeneID:12387755"
/translation="MNRYRFSRLLVCLSLLCCALYRYIDKQNDLTKLRLEIPCLWAQL
RQIEQENVALSFLLEKLESPEHLLQIAFLPEYQYLEYLSEEKISVLAYESP"
gene complement(304017..304919)
/gene="mraW"
/locus_tag="CTDLC_0272"
/db_xref="GeneID:12387756"
CDS complement(304017..304919)
/gene="mraW"
/locus_tag="CTDLC_0272"
/EC_number="2.1.1.-"
/note="S-adenosyl-methyltransferase"
/codon_start=1
/transl_table=11
/product="MraW"
/protein_id="YP_005812203.1"
/db_xref="GI:385244359"
/db_xref="GeneID:12387756"
/translation="MTDSIPHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTE
FPSIERYDGSDRDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLG
VSSMQLNNLERGFSFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPL
WRSAAAAVVHFRKKKKILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEG
AQLKVLLDSAFRWLRPGGRLAVISFCSLDDRPVKWAFREAEARGLGKILTKKVIMPSY
EETRMNPRSRSAKLRCFEKSFEDK"
misc_feature complement(304026..304919)
/gene="mraW"
/locus_tag="CTDLC_0272"
/note="Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane]; Region:
COG0275"
/db_xref="CDD:223352"
misc_feature complement(304035..304910)
/gene="mraW"
/locus_tag="CTDLC_0272"
/note="MraW methylase family; Region: Methyltransf_5;
pfam01795"
/db_xref="CDD:216706"
gene 305197..305763
/locus_tag="CTDLC_0273"
/db_xref="GeneID:12387757"
CDS 305197..305763
/locus_tag="CTDLC_0273"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812204.1"
/db_xref="GI:385244360"
/db_xref="GeneID:12387757"
/translation="MVEIFNYSTSVYEKHSSTNKLVNDFRKEIQMEGAAIRDIAKHAQ
ILDMTPKPSALSTLMQTNKKTCWASFSPPTNFHKQRFSTPYLVPSLGSPDKQDQDMEK
ISSYLKVLTRGKFSYRSTADTLSRKNKRSSDQKRNGQHFEQEELEVEEEVLVREGTVL
LRALDQGIKSSNLLIDYVISRIFQFVQG"
gene 305770..306189
/locus_tag="CTDLC_0274"
/db_xref="GeneID:12387758"
CDS 305770..306189
/locus_tag="CTDLC_0274"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812205.1"
/db_xref="GI:385244361"
/db_xref="GeneID:12387758"
/translation="MLDNEWKAILGWGDEELEELRISGYSFLRQGHYQKAILFFEALV
ILDPLSVYDFQTLGGLYLQISENTKALYVLDQALRMQGDHLPTLLNKTKALFCLGRIE
EASAIASYLTSCPDPIIADDAEALLLSYVKPPLVAVR"
misc_feature 305839..306081
/locus_tag="CTDLC_0274"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(305839..305841,305875..305877,305887..305889,
305896..305898,305941..305943,305977..305979,
305989..305991,305998..306000,306043..306045,
306079..306081)
/locus_tag="CTDLC_0274"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature order(305842..305847,305932..305937,305941..305946,
305953..305958,306034..306039,306046..306051,
306058..306063)
/locus_tag="CTDLC_0274"
/note="binding surface"
/db_xref="CDD:238112"
gene 306339..307799
/gene="dnaA"
/locus_tag="CTDLC_0275"
/db_xref="GeneID:12387759"
CDS 306339..307799
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="Chromosomal replication initiator protein"
/codon_start=1
/transl_table=11
/product="ATPase DnaA"
/protein_id="YP_005812206.1"
/db_xref="GI:385244362"
/db_xref="GeneID:12387759"
/translation="MLINSNATFAIFSRRRVHYRILNSSSDKENAMLTCNDCSTWEQF
VNYIKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSYLLDNYKKDLCSFVPLD
AEGNPALEFVVAEIKRSSPLVTPSIAKPATEVSEENKDFQLKLNGAYRFDNFIEGPSN
QFVKSAALGIAARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEA
FINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHLSKQ
IVVTSDKPPGQLKLSERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEIA
FYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRAPSKQKVSVESI
LKSVATVFQVKIQDLKGSSRAKNVPLARQVAMYLAKTLITDSLVAIGAAFGKTHSTVL
YACKTIEQKIEKDALLKNQISLCKNNIAIDSPQHFV"
misc_feature 306453..307769
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 306453..306623
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 306810..307244
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 306891..306914
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(306894..306917,307080..307082,307179..307181)
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 307068..307085
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 307215..307217
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 307503..307769
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(307572..307574,307596..307601,307620..307622,
307638..307646,307668..307682,307689..307691,
307698..307703)
/gene="dnaA"
/locus_tag="CTDLC_0275"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene complement(308394..309053)
/locus_tag="CTDLC_0277"
/db_xref="GeneID:12387760"
CDS complement(308394..309053)
/locus_tag="CTDLC_0277"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812207.1"
/db_xref="GI:385244363"
/db_xref="GeneID:12387760"
/translation="MSERKVENVTRSKRNKLLKFLRIKNSVVYRILIFVIRQIFPVLC
CICKAPGREICLSCWRRCSKRIYDNRCTRCLETLNIGEISAICSTCSALSPHLSLYLY
ELMPETLALYRCACLGNRSGEQSFSKAALRALILNQCSIDRIIFSSKDIERNIVESIA
RYLKVPCEKRSWYRKRKALDSAENICILSIYPFNRRVREEIFSQVPDNAIFMSLFPLA
H"
gene 309007..310566
/gene="nqr2"
/locus_tag="CTDLC_0278"
/db_xref="GeneID:12387761"
CDS 309007..310566
/gene="nqr2"
/locus_tag="CTDLC_0278"
/EC_number="1.6.5.-"
/codon_start=1
/transl_table=11
/product="Na(+)-translocating NADH-quinone reductase
subunit B"
/protein_id="YP_005812208.1"
/db_xref="GI:385244364"
/db_xref="GeneID:12387761"
/translation="MLRFERVTFSTFLSDTMLEKLVDSLWKICRKSKFQHMTPIADAV
DTFCFEPLHTPSSPPFVRDAVDVKRWMMLVVIALMPTIFAAVWNSGLQALVYQSSDPR
IMEAFLHISGFKSYFSFVSQEIGIGSVLFAGCKIFLPLLFISYAVGGTCEVLFAIIRK
HKIAEGLLVTGMLYPLILPPTIPYWMAALGIAFGVVMGKELFGGTGMNILNPALTGRA
FLFFTFPAKMSGDVWVGSNPSRIKESLATMSSLAEKSHFDGFSQSTCLQVLNSTPPSV
KRVHIDAIASNILNLEHVPTQDVLQTQFATWAESYPGLTVDQLSLEQLQNFVTTPITE
GGLGLLPAHFDSACSLTEAVYGIGKFSTGNLFFGNILGSLGETSTVACLLGAGLLLLT
GIASWRTMLSFGLSAFFFAWFFKIMSILTTGNAGAWAPAKFFIPAYRHLCIGGLAFGL
VFMATDPVSSPAMKLAKWLYGAFIGFLTILIRLINPAYPEGVMLAILLGNVFAPLFDN
IALKQYRQRRI"
misc_feature 309055..310563
/gene="nqr2"
/locus_tag="CTDLC_0278"
/note="Na(+)-translocating NADH-quinone reductase subunit
B; Provisional; Region: PRK01024"
/db_xref="CDD:179207"
gene 310570..311520
/gene="nqr3"
/locus_tag="CTDLC_0279"
/db_xref="GeneID:12387762"
CDS 310570..311520
/gene="nqr3"
/locus_tag="CTDLC_0279"
/EC_number="1.6.5.-"
/codon_start=1
/transl_table=11
/product="Na(+)-translocating NADH-quinone reductase
subunit C"
/protein_id="YP_005812209.1"
/db_xref="GI:385244365"
/db_xref="GeneID:12387762"
/translation="MASKSRHYLNQPWYIILFIFVLSLIAGTLLSSVYYVLAPIQQQA
AEFDRNQQMLMAAQVISSDNTFQVYEKGDWHPALYNTKKQLLEISSTPPKVTVTTLSS
YFQNFVRVLLTDTQGNLSSFEDHNLNLEEFLSQPTPVIHGLALYVVYAILHNDAASSK
LSASQVAKNPTAIESIVLPIEGFGLWGPIYGFLALEKDGNTVLGTSWYQHGETPGLGA
NIANPQWQKNFRGKKVFLVSASGETDFAKTTLGLEVIKGSVSAALGDSPKAASSIDGI
SGATLTCNGVTESFSHSLAPYRALLTFFANSKPSGESHDH"
misc_feature 310570..311514
/gene="nqr3"
/locus_tag="CTDLC_0279"
/note="Na+-transporting NADH:ubiquinone oxidoreductase,
subunit NqrC [Energy production and conversion]; Region:
NqrC; COG2869"
/db_xref="CDD:225424"
misc_feature 310594..311478
/gene="nqr3"
/locus_tag="CTDLC_0279"
/note="NADH:ubiquinone oxidoreductase,
Na(+)-translocating, C subunit; Region: nqrC; TIGR01938"
/db_xref="CDD:233647"
gene 311498..312151
/gene="nqr4"
/locus_tag="CTDLC_0280"
/db_xref="GeneID:12387763"
CDS 311498..312151
/gene="nqr4"
/locus_tag="CTDLC_0280"
/EC_number="1.6.5.-"
/codon_start=1
/transl_table=11
/product="Na(+)-translocating NADH-quinone reductase
subunit D"
/protein_id="YP_005812210.1"
/db_xref="GI:385244366"
/db_xref="GeneID:12387763"
/translation="MESLMTTNKSYLTYFTDALWINNQPLIAILGICSALAVTTTVTT
ALTMGFAVSFVTGCSSFVVSLLRKITPESVRMIAQLIIISLFVILIDQFLKAFFFTIS
KTLSVFVGLIITNCIVMGRAESMARHVSPIPAFLDGLGSGLGYGWVLVCISIIRELFG
FGTILGFRVIPEILYTSAAHPDGYENLGLMVLAPSAFFLLGIMIWIVNIIRAPKTKR"
misc_feature 311513..312145
/gene="nqr4"
/locus_tag="CTDLC_0280"
/note="NADH:ubiquinone oxidoreductase,
Na(+)-translocating, D subunit; Region: nqrD; TIGR01939"
/db_xref="CDD:130994"
gene 312157..312891
/gene="nqr5"
/locus_tag="CTDLC_0281"
/db_xref="GeneID:12387764"
CDS 312157..312891
/gene="nqr5"
/locus_tag="CTDLC_0281"
/EC_number="1.6.5.-"
/codon_start=1
/transl_table=11
/product="Na(+)-translocating NADH-quinone reductase
subunit E"
/protein_id="YP_005812211.1"
/db_xref="GI:385244367"
/db_xref="GeneID:12387764"
/translation="MWLGDYSLLNLLGIFLQATFIQNILLSTFLGMCSYLACSSRLST
ANGLGMSVALVLTITGSINWLVHYFITKPGALAWLSPALANIDLSFLELIMFIVVIAA
FTQILEVLLERFSRNLYLALGIFLPLIAVNCAILGGVLFGITRNYPFLPMVVFSLGSG
CGWWLAIVLFATIREKLAYSDVPQHLRGTGISFITTGLMAMAFMGLTGIDISKPTTSK
PAFVTNIATDSPQPNTHSSSEEPKAS"
misc_feature 312157..312870
/gene="nqr5"
/locus_tag="CTDLC_0281"
/note="Na(+)-translocating NADH-quinone reductase subunit
E; Provisional; Region: PRK01061"
/db_xref="CDD:234895"
gene complement(312915..313283)
/gene="gcsH"
/locus_tag="CTDLC_0282"
/db_xref="GeneID:12387765"
CDS complement(312915..313283)
/gene="gcsH"
/locus_tag="CTDLC_0282"
/codon_start=1
/transl_table=11
/product="Glycine cleavage system H protein"
/protein_id="YP_005812212.1"
/db_xref="GI:385244368"
/db_xref="GeneID:12387765"
/translation="MSRTIMKGKKYYSDYHVWIEPIHSRIVKLGLSSQMREHLGNILH
IDLPSLGAFIKEGEKLCILESSKSAIEVLSPVSGEVLEVNTALEDDILPVNNATESEG
WFVVLQLTEDFRSESFSLEP"
misc_feature complement(312963..313250)
/gene="gcsH"
/locus_tag="CTDLC_0282"
/note="Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system (GCS)
found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of 4
different components (P-, H-, T- and...; Region: GCS_H;
cd06848"
/db_xref="CDD:133457"
misc_feature complement(313083..313085)
/gene="gcsH"
/locus_tag="CTDLC_0282"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133457"
gene complement(313288..315360)
/locus_tag="CTDLC_0283"
/db_xref="GeneID:12387766"
CDS complement(313288..315360)
/locus_tag="CTDLC_0283"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812213.1"
/db_xref="GI:385244369"
/db_xref="GeneID:12387766"
/translation="MLAFFNKHQKKFIGLVIAGVCLSGVGVGVGQTVKKTNKLGSGKT
VYRTPLGRKYSEKEFLLLKHFLSNEAYPFTGNPREWNFLNEGLLTERFLTNKLGEKIF
LSIYKSGFPAFDKERSYEGYRRFDAPFISSEEVWKSSAPQLREAFHIFQQLTDPVSPE
GFAARVRLFLEEKKFPHYVLRQMLEYRRQMFNLPVDNSLVQGRDLRLFGYKNVKDWFG
DKYISSVTEAMLCFIDEQKKKVGMPSLKEARQDFYDKAQHAFARLSKHAEFNLTFEQL
VASFYAFMGVEESDFLSMYREILLYKKALLSLEGAVSFDYYPLQKFFSMGKDSVSVEL
FHLPDSLVFKDKEDLEAFETYLHLTAFPSAHVLDVPTKAFPIERVRRKAECLVGKRFA
VSYQSVKLSDLEKYVPMSQVYQWYQNPENFEEIVLEFPELETSSSLRDILNLRPAIVE
KAHSYVRKAILRADPERIQSELAKKERQEEELFLSIGKDHVLPGIQNGVRLANVLMQQ
DSVDSYTQDNEHFYSISVISRADKDEVLPYKEVLRKGLKKVLLEKYKAEERISRVLTH
LQEAFPNSQGQDLYQRRLVRFVKAFQTGKLAQGDLFGGLEKTMKTFSRGDQGAPQEFE
DMFALKEGQVSDVLFDLDKGPFYYTAISKSCCDYPVSLDKLLFAKSHLNEEFLRPYLE
EVFFHNPS"
misc_feature complement(313306..315357)
/locus_tag="CTDLC_0283"
/note="Chlamydial GcvH-like protein upstream region
protein; Region: near_not_gcvH; TIGR03076"
/db_xref="CDD:211786"
gene complement(315555..316979)
/locus_tag="CTDLC_0284"
/db_xref="GeneID:12387767"
CDS complement(315555..316979)
/locus_tag="CTDLC_0284"
/EC_number="3.1.4.4"
/codon_start=1
/transl_table=11
/product="phospholipase D"
/protein_id="YP_005812214.1"
/db_xref="GI:385244370"
/db_xref="GeneID:12387767"
/translation="MKMAFLRKIFVFVACVVSLNGFAHTIAIPDGDKKAKVLIHDNGY
EMYEHLLAAISSAKYTVELCPCLAGGEILSTVLQRLEQRMEEVPALVSYILVQPTCID
DNDRKNLKTLQENYPDRFFYLFSDWPPYCNVFFPNVTESHTKLSIVDGKYIFIGGSNL
EDLQCSKGDVDLEVSDSPRAVIGGVLRPSAMRDQDVTIVSEEYGALLRKEFCAHYALW
KDFTQKLWLNKKLDDFRGIDPINLSIEKARSSFCAMIETSLCAVSVPLDKMHFIFSGP
DESNNTIAEEYVRLINQAQHSIRIAQMFFIPVAKIYDSLMAACWDRGVEIYLVTNGRT
DRSPEITRSYAWGNRINYFPLTFGSRPLLWERFLYSPSRASMKFYVSEFYVANTQLHK
KCMLVDDHILVIGSYNFGKKSNDCDYECIVVIDSKEAVSKAQVVFEKDLRLSKSVTHD
DIINWYFDPVHYCLGYLEQRYMPS"
misc_feature complement(315603..316973)
/locus_tag="CTDLC_0284"
/note="Phosphatidylserine/phosphatidylglycerophosphate/car
diolipin synthases and related enzymes [Lipid metabolism];
Region: Cls; COG1502"
/db_xref="CDD:224419"
misc_feature complement(<316494..316856)
/locus_tag="CTDLC_0284"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
misc_feature complement(order(316503..316505,316509..316511,
316548..316550,316554..316556))
/locus_tag="CTDLC_0284"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature complement(316554..316556)
/locus_tag="CTDLC_0284"
/note="catalytic site [active]"
/db_xref="CDD:197200"
misc_feature complement(315618..316160)
/locus_tag="CTDLC_0284"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:246902"
misc_feature complement(order(315723..315725,315756..315758,
315762..315764,315801..315803,315807..315809))
/locus_tag="CTDLC_0284"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature complement(315807..315809)
/locus_tag="CTDLC_0284"
/note="catalytic site [active]"
/db_xref="CDD:197200"
gene complement(316985..317704)
/gene="lplA_1"
/locus_tag="CTDLC_0285"
/db_xref="GeneID:12387768"
CDS complement(316985..317704)
/gene="lplA_1"
/locus_tag="CTDLC_0285"
/EC_number="6.3.2.-"
/codon_start=1
/transl_table=11
/product="Lipoate-protein ligase A"
/protein_id="YP_005812215.1"
/db_xref="GI:385244371"
/db_xref="GeneID:12387768"
/translation="MRTRVIDSIRGTPKDLMQKDRLLLDSLRKGEVILHLYEWEGIFP
LTYGCFIKPERFLKANWESLGVSAASRPTGGGVTFHNSDYAFSLLVSSEHPLYQDSIL
ANYHTVNRFVLKTINKLFGLEGSLSPIEVSTDRAESSNFCVAKTSKYDVLIGNRKVGG
AAQRSVKQGFLHQGSIFLSGNSLDFYRNILLPDLVDKIGPEIEKSAFFPLGMEASSTV
LKEVRKEVKDSLMRIFMQEGI"
misc_feature complement(316991..317704)
/gene="lplA_1"
/locus_tag="CTDLC_0285"
/note="Lipoate-protein ligase A [Coenzyme metabolism];
Region: LplA; COG0095"
/db_xref="CDD:223173"
gene 317969..320533
/gene="mecB"
/locus_tag="CTDLC_0286"
/db_xref="GeneID:12387769"
CDS 317969..320533
/gene="mecB"
/locus_tag="CTDLC_0286"
/codon_start=1
/transl_table=11
/product="Negative regulator of genetic competence
clpC/mecB"
/protein_id="YP_005812216.1"
/db_xref="GI:385244372"
/db_xref="GeneID:12387769"
/translation="MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGV
AVNVLRTLGVDFDTAKHEVERLIGYGPEIQVCGDPALTGRVKKSFESANEEAALLEHN
YVGTEHLLLGILNQSDGVALQVLENLHVDPKEIRKEILKELETFNLQLPPSSSITPRN
TNSSSSSKSSSPLGGHTLGGDKPEKLSALKAYGYDLTEMFKESRLDPVIGRSAEVERL
ILILCRRRKNNPVLVGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDLALMIAG
TKYRGQFEERIKAVMDEVRKHGNILLFIDELHTIVGAGAAEGAIDASHILKPALARGE
IQCIGATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFI
TDEALVAAAKLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPSDLVRLEAEIEKTK
QAKEQAIGTQEYEKAASLRDEEKKLREKLGNMKQQWESNKEEHQVPVDEEAVAQVVSV
QTGIPAARLTEAESEKLLTLETTLQKKVIGQSQAVASICRAIRRSRTGIKDPNRPMGS
FLFLGPTGVGKTLLAQQIAIEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEE
GGHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIM
TSNLGADLIRKSGEIGFGLRSHMDYAVIKEKIDAAVKKHLKPEFINRLDESVIFKPLE
KEALSEIIHLEINKLGSRLQNYQMDLNIPDSVISFLVTKGHSPEMGARPLRRVVEQYL
EDPLAEMLLKESCRQEARKLRARLTEERVVFEREEEAVSALAIEGDGSEPITADES"
misc_feature 317978..320404
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones]; Region: clpA; COG0542"
/db_xref="CDD:223616"
misc_feature 318014..318172
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 318242..>318364
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 318593..319072
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 318668..318691
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(318671..318694,318881..318883,318992..318994)
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 318869..318886
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 319043..319045
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 319295..319402
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
misc_feature 319646..320023
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 319679..319702
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(319682..319705,319895..319897,320021..320023)
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 319883..319900
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 320183..320395
/gene="mecB"
/locus_tag="CTDLC_0286"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene complement(320514..321590)
/gene="mnmA"
/locus_tag="CTDLC_0287"
/db_xref="GeneID:12387770"
CDS complement(320514..321590)
/gene="mnmA"
/locus_tag="CTDLC_0287"
/EC_number="2.1.1.61"
/codon_start=1
/transl_table=11
/product="tRNA (5-methyl
aminomethyl-2-thiouridylate)-methyltransferase"
/protein_id="YP_005812217.1"
/db_xref="GI:385244373"
/db_xref="GeneID:12387770"
/translation="MRKTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN
GECTATKDFRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNR
EIKFDLLQKKVRELKGDFLATGHYCRGGADGTGLSRGIDPNKDQSYFLCGTPKDALSN
VLFPLGGMYKTEVRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSPGDIID
FDTQQVVGRHEGAHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYR
QELLAKELNWFVPLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQ
TVAFYQGDICLGGGVIEVPMIHQL"
misc_feature complement(320541..321584)
/gene="mnmA"
/locus_tag="CTDLC_0287"
/note="tRNA methyl transferase; Region: tRNA_Me_trans;
pfam03054"
/db_xref="CDD:217339"
misc_feature complement(320541..321581)
/gene="mnmA"
/locus_tag="CTDLC_0287"
/note="tRNA methyl transferase. This family represents
tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
which is involved in the biosynthesis of the modified
nucleoside 5-methylaminomethyl-2-thiouridine present in
the wobble position of some tRNAs; Region: tRNA_Me_trans;
cd01998"
/db_xref="CDD:238956"
misc_feature complement(order(321483..321485,321489..321491,
321546..321557,321561..321569))
/gene="mnmA"
/locus_tag="CTDLC_0287"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238956"
gene 321822..323513
/locus_tag="CTDLC_0288"
/db_xref="GeneID:12387771"
CDS 321822..323513
/locus_tag="CTDLC_0288"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812218.1"
/db_xref="GI:385244374"
/db_xref="GeneID:12387771"
/translation="MVYFRAHQPRHTPKTFPLEVHHSFSDKHPQIAKAMRITGIALAA
LSLLAVVACVIAVSAGGAAIPLAVISGIAVMSGLLSAATIICSAKKALAQRKQKQLEE
SLPLDNATEHVSYLTSDTSYFNQWESLGALNKQLSQIDLTIQAPEKKLLKEVLGSRYD
SINHSIEEISDRFTKMLSLLRLREHFYRGEERYAPYLSPPLLNKNRLLTQITSNMIRM
LPKSGGVFSLKANTLSHASRTLYTVLKVALSLGVLAGVAALIIFLPPSLPFIAVIGVS
SLALGMASFLMIRGIKYLLEHSPLNRKQLAKDIQKTIGPDVLASMVHYQHQLLSHLHE
TLLDEAITARWSEPFFIEHANLKAKIEDLTKQYDILNAAFNKSLQQDEALRSQLEKRA
YLFPIPNNDENAKTKESQLLDSENDSNSEFQEIINKGLEAANKRRADAKSKFYTEDET
SDKIFSIWKPTKNLALEDLWRVHEACNEEQQALLLEDYMSYKTSECQAALQKVSQELK
AAQKSFAVLEKHALDRSYESSVATMDLARANQETHRLLNILSELQQLAQYLLDNH"
gene complement(323600..324739)
/locus_tag="CTDLC_0289"
/db_xref="GeneID:12387772"
CDS complement(323600..324739)
/locus_tag="CTDLC_0289"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812219.1"
/db_xref="GI:385244375"
/db_xref="GeneID:12387772"
/translation="MVIPKVDLGESAVMMGYKLTSQLAMLSILLTFTHTMGHASQMSQ
TLPTIIEAQAEEALQADRGVAGQALKKLRKKRCASRKSACKASFKKKDFFSCITNGLF
SGNHEQRLTAKKENKARGKEPRVVVQTTKKRQITQSEKEFFDWLCNSKRERKLLKKKP
VNTSLAKSEELSPKEAAIAAARASLSPEEKRQLIREWLAEEKTARKSGRAACAVSENL
KRDGSITSTLRYDAEKALTTRVKRNENSVNARARQRAALQKAKKAKTEKPEADEKAAE
AVAAAPTKQAHKEPENYFAATASTNNTNVMSYLNAHQYRCDSSETDWPCSSCVTKRRA
NFGISVCTMVVTVIAMIVGAVIISNATDSTVAGSSGTGGGGSTQP"
gene complement(324797..325474)
/gene="ptsN_1"
/locus_tag="CTDLC_0290"
/db_xref="GeneID:12387773"
CDS complement(324797..325474)
/gene="ptsN_1"
/locus_tag="CTDLC_0290"
/EC_number="2.7.1.69"
/codon_start=1
/transl_table=11
/product="Nitrogen regulatory IIA protein"
/protein_id="YP_005812220.1"
/db_xref="GI:385244376"
/db_xref="GeneID:12387773"
/translation="MDLRLDQLAVLLDVAEDSIRQWVSCGGIPSYTINDELRFNREEV
EDWLIHNHGVILDEKREEKGESKDLSLRYSLYRAIYRGGVLKNVLVDSKEGALRYAAH
YIANKFELDPVVLFEMLMHRESLMSTGIGEGIALPHAKDFLINVGYDIIVPVFLSQSI
EYGALDGKPVDTLFFLFANQDRNHLNLVNKIVHLGMSIQARLFLKEHPDQPQLLAFVK
NWEAQIH"
misc_feature complement(325331..325468)
/gene="ptsN_1"
/locus_tag="CTDLC_0290"
/note="Helix-turn-helix domain; Region: HTH_17; pfam12728"
/db_xref="CDD:205047"
misc_feature complement(324824..325225)
/gene="ptsN_1"
/locus_tag="CTDLC_0290"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:238129"
misc_feature complement(order(325061..325063,325109..325111))
/gene="ptsN_1"
/locus_tag="CTDLC_0290"
/note="active site"
/db_xref="CDD:238129"
misc_feature complement(325061..325063)
/gene="ptsN_1"
/locus_tag="CTDLC_0290"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238129"
gene complement(325477..325983)
/gene="ptsN_2"
/locus_tag="CTDLC_0291"
/db_xref="GeneID:12387774"
CDS complement(325477..325983)
/gene="ptsN_2"
/locus_tag="CTDLC_0291"
/codon_start=1
/transl_table=11
/product="PTS system nitrogen regulatory protein IIA"
/protein_id="YP_005812221.1"
/db_xref="GI:385244377"
/db_xref="GeneID:12387774"
/translation="MDLGILGNVKMTCVADHKQAVTLSSLLSSDLITFLHSDTREDIL
FELSELAARAGLLEDREAFFRALLARENIMSTGIGMGVAIPHGKIDGSADFFIALGIH
SEGILWDAIDGLSVRLVFLIGGPSDAPSKYLKLLSALTQSLRDEARRSQLLQVQTVEE
VMSVFSGV"
misc_feature complement(325489..325890)
/gene="ptsN_2"
/locus_tag="CTDLC_0291"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature complement(order(325726..325728,325774..325776))
/gene="ptsN_2"
/locus_tag="CTDLC_0291"
/note="active site"
/db_xref="CDD:29266"
misc_feature complement(325726..325728)
/gene="ptsN_2"
/locus_tag="CTDLC_0291"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene complement(325955..326392)
/gene="dut"
/locus_tag="CTDLC_0292"
/db_xref="GeneID:12387775"
CDS complement(325955..326392)
/gene="dut"
/locus_tag="CTDLC_0292"
/EC_number="3.6.1.23"
/codon_start=1
/transl_table=11
/product="deoxyuridine 5'-triphosphate
nucleotidohydrolase"
/protein_id="YP_005812222.1"
/db_xref="GI:385244378"
/db_xref="GeneID:12387775"
/translation="MKFFCKLESGSSLPEYATSGASGADVRANINEPIAILPGQRALI
PTGISVEIPHGYEIQVRSRSGLASKYGVIVLQSPGTVDADYRGEIRVILANLGEATFI
VEPGMRIAQLVVAKVEQVSFVETQEELTATARGTGGFGHTGEC"
misc_feature complement(326051..326329)
/gene="dut"
/locus_tag="CTDLC_0292"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature complement(order(326060..326062,326072..326074,
326081..326095,326105..326107,326111..326113,
326117..326119,326123..326125,326144..326146,
326153..326155,326171..326179,326195..326212,
326216..326218,326264..326266,326270..326275,
326288..326290,326324..326329))
/gene="dut"
/locus_tag="CTDLC_0292"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature complement(order(326123..326128,326138..326140,
326147..326155,326198..326206))
/gene="dut"
/locus_tag="CTDLC_0292"
/note="active site"
/db_xref="CDD:143638"
gene complement(326429..327355)
/gene="accD"
/locus_tag="CTDLC_0293"
/db_xref="GeneID:12387776"
CDS complement(326429..327355)
/gene="accD"
/locus_tag="CTDLC_0293"
/EC_number="6.4.1.2"
/codon_start=1
/transl_table=11
/product="Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta"
/protein_id="YP_005812223.1"
/db_xref="GI:385244379"
/db_xref="GeneID:12387776"
/translation="MRLFSYDKPKIKVQKIKADGFSGWLKCTHCSEMIHANELGQNFN
CCPKCSYHYRISVSERIALLADKDSWNPLFSDLRSQDPLNFVDTDTYPNRLEKARKDN
PDSEGVLVGVCTIGSHPVALAVMDFSFMAGSMGAVVGEKLTRLIEKAIDSRLPVIIVS
ASGGARMQESVFSLMQMAKTSAALAKLHEAKLPYISVLTNPTSGGVTASFASLGDVII
AEPKALICFAGPRVVSQVIGEDLPEGAQKSEFLLEHGMIDKVVERKQLKTTLESLLSF
FSCQAYSGGKGNCPRDISKTLKEIFLLTDDNE"
misc_feature complement(326507..327355)
/gene="accD"
/locus_tag="CTDLC_0293"
/note="acetyl-CoA carboxylase subunit beta; Validated;
Region: PRK05654"
/db_xref="CDD:235547"
misc_feature complement(<326636..327037)
/gene="accD"
/locus_tag="CTDLC_0293"
/note="malonate decarboxylase subunit beta; Reviewed;
Region: PRK07189; cl17682"
/db_xref="CDD:248236"
gene complement(327427..328083)
/gene="sodM"
/locus_tag="CTDLC_0294"
/db_xref="GeneID:12387777"
CDS complement(327427..328083)
/gene="sodM"
/locus_tag="CTDLC_0294"
/EC_number="1.15.1.1"
/codon_start=1
/transl_table=11
/product="Superoxide dismutase"
/protein_id="YP_005812224.1"
/db_xref="GI:385244380"
/db_xref="GeneID:12387777"
/translation="MARIVTLFFRMAMVFSSYMLPALPYDYDALEPVISAEIMQLHHQ
KHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGK
GGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTA
NQDPLEATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSFPSIINWDYIENRFVEMSKQ
"
misc_feature complement(327430..328041)
/gene="sodM"
/locus_tag="CTDLC_0294"
/note="Superoxide dismutase [Inorganic ion transport and
metabolism]; Region: SodA; COG0605"
/db_xref="CDD:30950"
misc_feature complement(327790..328035)
/gene="sodM"
/locus_tag="CTDLC_0294"
/note="Iron/manganese superoxide dismutases, alpha-hairpin
domain; Region: Sod_Fe_N; pfam00081"
/db_xref="CDD:200985"
misc_feature complement(327448..327762)
/gene="sodM"
/locus_tag="CTDLC_0294"
/note="Iron/manganese superoxide dismutases, C-terminal
domain; Region: Sod_Fe_C; pfam02777"
/db_xref="CDD:202388"
gene complement(328179..329960)
/gene="mrsA_1"
/locus_tag="CTDLC_0295"
/db_xref="GeneID:12387778"
CDS complement(328179..329960)
/gene="mrsA_1"
/locus_tag="CTDLC_0295"
/EC_number="5.4.2.2"
/EC_number="5.4.2.8"
/note="phosphomannomutase"
/codon_start=1
/transl_table=11
/product="Phosphoglucomutase"
/protein_id="YP_005812225.1"
/db_xref="GI:385244381"
/db_xref="GeneID:12387778"
/translation="MEIPRRKIEGMFDPQTAKNILSWLEDVVCDHTSVLTLLDNDPER
LRELFSETLTFGTAGLRGLVGIGTNRLNVFTIRRATQGLARVLKRRYPDEKISVVIGY
DTRHYSFEFGQETAKVLAGNGILAYLFQIPEPLALVSYSVRELQAKAGVMITASHNPP
PYNGYKVYMSTGGQVLPPMDQEIVEEFQKVEMVSAVESLDHPYIRMVQEDMENCYEET
LHNLQLCEEDNRRHGSLLRISYSPLHGTGVTMIPRILKDWGFSSVSLVEKQIVPDGDF
STVVLPNPEDPEALVLGIQQMVEQKDDLFIATDPDSDRIGVVSLEKEGPYRFNGNQIA
CLLAAHILSKESQKAPLGAEDKVVKSLVTTELLTAISESYGANIVNVGAGFKYIGEKI
ELWRSGMERFIFGAEESYGYLYGSYVEDKDAMIAAALISEAALQQKIRGCTLRDALLE
LYEVYGYYANRTESIDLPIDQPQRKQELLDRWETQDPLRMSLSSRKLIAFENYNTGEG
RDLVTDITYKLSLPKMSMLCFYYEGDCRVIVRPSGTEPKMKLYFEIKQSFSEFSKERT
VREAREKESFEALQQFIKETKSYLFYS"
misc_feature complement(328218..329816)
/gene="mrsA_1"
/locus_tag="CTDLC_0295"
/note="Phosphomannomutase [Carbohydrate transport and
metabolism]; Region: {ManB}; COG1109"
/db_xref="CDD:224034"
misc_feature complement(328296..329807)
/gene="mrsA_1"
/locus_tag="CTDLC_0295"
/note="This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and...; Region: PGM2; cd05799"
/db_xref="CDD:100092"
misc_feature complement(order(328314..328316,328329..328337,
328341..328343,328728..328730,328734..328736,
328740..328742,328806..328814,328875..328877,
329019..329024,329028..329030,329034..329036,
329463..329465,329487..329495,329778..329780,
329787..329789,329793..329795))
/gene="mrsA_1"
/locus_tag="CTDLC_0295"
/note="active site"
/db_xref="CDD:100092"
misc_feature complement(order(328314..328316,328329..328337,
328341..328343,328728..328730,328734..328736,
328740..328742,328806..328808,328812..328814,
328875..328877,329019..329021,329493..329495,
329787..329789))
/gene="mrsA_1"
/locus_tag="CTDLC_0295"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100092"
misc_feature complement(order(329022..329024,329028..329030,
329034..329036,329493..329495))
/gene="mrsA_1"
/locus_tag="CTDLC_0295"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100092"
gene complement(330112..330585)
/locus_tag="CTDLC_0296"
/db_xref="GeneID:12387779"
CDS complement(330112..330585)
/locus_tag="CTDLC_0296"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812226.1"
/db_xref="GI:385244382"
/db_xref="GeneID:12387779"
/translation="MSMRAVLHLEHKRYFQNHGHILFEGLAPVSDCKQLEAELKLFLK
EVAVVKDRHLQRWRENVHRTLPEVQMIVKRVRLDHLAAELTHRSRVALVRDLWVQKQE
EIFFDDCDCSVLLCLSGEKAGWGLFFSGEYPQDVFNWGAGDTAIILRFSSAGFPN"
gene 330688..331383
/gene="rnc"
/locus_tag="CTDLC_0297"
/db_xref="GeneID:12387780"
CDS 330688..331383
/gene="rnc"
/locus_tag="CTDLC_0297"
/EC_number="3.1.26.3"
/codon_start=1
/transl_table=11
/product="Ribonuclease III"
/protein_id="YP_005812227.1"
/db_xref="GI:385244383"
/db_xref="GeneID:12387780"
/translation="MQHTVDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDS
ERLEFLGDAVLGLVVTEHLFLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLL
IGRGEKMQSHRGKISAYANLLEAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVN
PKNRLQQFTQQTLKVLPSYKALPWKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKL
AAKQALSTHDNKN"
misc_feature 330697..331320
/gene="rnc"
/locus_tag="CTDLC_0297"
/note="ribonuclease III; Reviewed; Region: rnc; PRK00102"
/db_xref="CDD:234633"
misc_feature 330751..331128
/gene="rnc"
/locus_tag="CTDLC_0297"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:238333"
misc_feature order(330820..330825,330832..330837,330844..330846,
330853..330858,330865..330870,330874..330882,
330910..330912,331078..331080,331105..331107)
/gene="rnc"
/locus_tag="CTDLC_0297"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature order(330820..330822,330829..330831,330841..330843,
331048..331050,331057..331059)
/gene="rnc"
/locus_tag="CTDLC_0297"
/note="active site"
/db_xref="CDD:238333"
misc_feature order(330829..330831,331048..331050,331057..331059)
/gene="rnc"
/locus_tag="CTDLC_0297"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238333"
misc_feature 331165..>331320
/gene="rnc"
/locus_tag="CTDLC_0297"
/note="Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III; Region:
DSRM; cd00048"
/db_xref="CDD:238007"
misc_feature order(331165..331167,331183..331188,331315..331320)
/gene="rnc"
/locus_tag="CTDLC_0297"
/note="dsRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:238007"
gene 331268..332731
/gene="radA"
/locus_tag="CTDLC_0298"
/db_xref="GeneID:12387781"
CDS 331268..332731
/gene="radA"
/locus_tag="CTDLC_0298"
/note="protein RadA"
/codon_start=1
/transl_table=11
/product="DNA repair protein"
/protein_id="YP_005812228.1"
/db_xref="GI:385244384"
/db_xref="GeneID:12387781"
/translation="MYKSLLMGIFGEKALQDQKKKQKNLLLNRRYQHMTTKIKTQWTC
TECGTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRI
HTQAQGWNRLLGGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESV
SQTSLRAQRLQISSNNIFLFPETNLEDIKQQIDNIAPDILVIDSIQIIFSPSLSSAPG
SVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNAHAN
YRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSE
TLLIEVQALVSSSPFSNPVRKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGL
KITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIRHVSHMEHRIKESIIMGF
KGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ"
misc_feature 331376..332725
/gene="radA"
/locus_tag="CTDLC_0298"
/note="DNA repair protein RadA; Provisional; Region:
PRK11823"
/db_xref="CDD:183326"
misc_feature 331391..332497
/gene="radA"
/locus_tag="CTDLC_0298"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:29987"
misc_feature 331646..331669
/gene="radA"
/locus_tag="CTDLC_0298"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:29987"
misc_feature order(331649..331651,331661..331669,331724..331726,
331730..331732,331874..331879)
/gene="radA"
/locus_tag="CTDLC_0298"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29987"
misc_feature 331865..331876
/gene="radA"
/locus_tag="CTDLC_0298"
/note="Walker B motif; other site"
/db_xref="CDD:29987"
misc_feature <332465..332644
/gene="radA"
/locus_tag="CTDLC_0298"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
cl12214"
/db_xref="CDD:209472"
gene 332709..333434
/gene="hemC"
/locus_tag="CTDLC_0299"
/db_xref="GeneID:12387782"
CDS 332709..333434
/gene="hemC"
/locus_tag="CTDLC_0299"
/EC_number="2.5.1.61"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_005812229.1"
/db_xref="GI:385244385"
/db_xref="GeneID:12387782"
/translation="MLSAYYNDPFLADFCLGNIPLRLASRQSSLAVLQAHECLRKLQI
FFPRLWGQIITTTTQGDLDQETPLCAVENTGFFTDDVDFLVQSGQCDLGIHSAKDLPE
NPKATVVSITASIDPRDILVFHEKYLSIPLPRRLRIGSSSVRRKELLSLLYPSAIITD
IRGTIQTRLKLLEEKNFDAIVMANAAVSRLGLRLPCTKILPPPYHPLQGRLAITASRH
IRSWRGLFLTCGITEDVEIMCFS"
misc_feature 332718..333410
/gene="hemC"
/locus_tag="CTDLC_0299"
/note="porphobilinogen deaminase; Provisional; Region:
PRK01066"
/db_xref="CDD:167150"
misc_feature 332769..333347
/gene="hemC"
/locus_tag="CTDLC_0299"
/note="Porphobilinogen deaminase, dipyromethane cofactor
binding domain; Region: Porphobil_deam; pfam01379"
/db_xref="CDD:216465"
gene 333782..334174
/locus_tag="CTDLC_0300"
/db_xref="GeneID:12387783"
CDS 333782..334174
/locus_tag="CTDLC_0300"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812230.1"
/db_xref="GI:385244386"
/db_xref="GeneID:12387783"
/translation="MGNQSVICWPHIFGDMCYVLNFITGKYSTPSPNNCRPQSPQKTG
GHSNLLFVLALLPVIGLGVAIYLCARRANYWKGNAAIATAGGLGLITIAAALMVVITP
IIFCLRYLYQLLRQLPAHCCGSSHQIEI"
gene complement(334227..337031)
/gene="pknD"
/locus_tag="CTDLC_0301"
/db_xref="GeneID:12387784"
CDS complement(334227..337031)
/gene="pknD"
/locus_tag="CTDLC_0301"
/EC_number="2.7.11.1"
/codon_start=1
/transl_table=11
/product="Serine/threonine protein kinase"
/protein_id="YP_005812231.1"
/db_xref="GI:385244387"
/db_xref="GeneID:12387784"
/translation="MQRYELIRLIGKGGMGEVYLAHDKACSRRVALKRIREDLSGNAL
LRQRFLREAKIAADLIHPGIVPVYSICSDGEAVYYTMPYIEGFSLKSLLKSVWQKEVL
SKELEEKTSVKSFLPIFDKICATVEYIHSKGVLHRDLKPDNILLGLFGEVVIIDWGAA
IFKHAKELKLEQDDEAAVSFDERNICYSSMTIPGKIVGTPDYMAPESLLGVEASEKTD
IYALGLILYQMLTLAFPYRRKKGRKLSYRDVVLPPIEMSPYREIPPSLSQIAMKAIAI
NPADRFSSIQELRQALQPYLQGDPEWTVKATLMAKEKSCWKYYDPILLSRYFPVLASS
PAQWYNFMLSEVEISASTRVEYTVTKSAVHEGMGILFLPSKEAERGEFYCGYGLWFSV
QNHELTVSLIKNGIEIQKKSQEMISQQSRFAILIEKSDNRIAVFVEQALFILHIDYLP
SLGNRLGVIIQDLQGMSNIAISESIGALRVSCLAVPDAFLSEKLYDQAAIFYRKIRDS
FPGRKESYEAQFRLGVTLLTQIEEQGGDLTQALSSFDYLHGGAGAPLEYLGKALVYQR
NGSFVEEIRCLLFALKRYSQHPEIPRLEDHLCFRLYDSLHKHRSEALVFMLLILWIAP
EKISVREEERFLRIIYHKQQATLFCQVDKAPLQFRSSKMELFLSFWTGFSLFLPELFR
RAGGLRDYQALADIFYVAGVSGNREAFMQFSTALANVSDEITFPESLHNQKVAELMFF
VKGVEALRNKDYQKAKKLLWKTPFTLQLYALDMFHIQAFLDEEIESFIDLLQAIYDPA
SEEERDHILVYIIQTHLWNRDLERAYKLLNDRFPLDEELAEYSEAFILWGCYLALTGD
RVVVKAHFSRCRYKYGKSALIGKCVDGDIFDYLDNLVWWEKKMTLFQSYFLLRCLNES
PRRYEKYRQAYLSMENNFFD"
misc_feature complement(334230..337031)
/gene="pknD"
/locus_tag="CTDLC_0301"
/note="serine/threonine-protein kinase; Reviewed; Region:
pknD; PRK13184"
/db_xref="CDD:183880"
misc_feature complement(336345..337004)
/gene="pknD"
/locus_tag="CTDLC_0301"
/note="Catalytic domain of Protein Kinases; Region: PKc;
cd00180"
/db_xref="CDD:173623"
misc_feature complement(order(336429..336440,336555..336557,
336564..336566,336597..336599,336603..336608,
336612..336614,336618..336620,336762..336764,
336768..336770,336780..336791,336837..336839,
336933..336935,336939..336941,336978..336980,
336990..337004))
/gene="pknD"
/locus_tag="CTDLC_0301"
/note="active site"
/db_xref="CDD:173623"
misc_feature complement(order(336564..336566,336597..336599,
336603..336608,336612..336614,336618..336620,
336768..336770,336780..336791,336837..336839,
336933..336935,336939..336941,336978..336980,
336990..337004))
/gene="pknD"
/locus_tag="CTDLC_0301"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:173623"
misc_feature complement(order(336429..336440,336555..336557,
336606..336608,336612..336614,336618..336620,
336762..336764,336768..336770,336990..336992))
/gene="pknD"
/locus_tag="CTDLC_0301"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173623"
misc_feature complement(order(336429..336440,336549..336569))
/gene="pknD"
/locus_tag="CTDLC_0301"
/note="activation loop (A-loop); other site"
/db_xref="CDD:173623"
gene complement(337046..339865)
/gene="valS"
/locus_tag="CTDLC_0302"
/db_xref="GeneID:12387785"
CDS complement(337046..339865)
/gene="valS"
/locus_tag="CTDLC_0302"
/EC_number="6.1.1.9"
/codon_start=1
/transl_table=11
/product="valyl-tRNA synthetase"
/protein_id="YP_005812232.1"
/db_xref="GI:385244388"
/db_xref="GeneID:12387785"
/translation="MNEDQFPKAYDPKSSETGVYSFWERSGMFVANASSEKPAYSIVM
PPPNVTGILHMGHALVNTLQDTLIRYKRMQGFEVCWVPGTDHAGIATQTVVERHLKAS
LGKQRTDFSREEFLKHVWDWKEKSQNVILSQLRQLGCSCDWSRQRFTMDPGANRAVKK
AFKILFDKGVIYRGYYLVNWDPILQTALADDEVEYEERDGWLYYIRYQVVNSEEFITV
ATTRPETLLGDTAIAVSPEDLRYSHLIGAKVVVPFVNREIPIIGDFSVDASFGTGAVK
ITPAHDKDDYKTGMNHQLPMINILTPTGEINENGGIFTGLSREVARENIITSLEALGL
FVKKEAYSSRVGVSYRSGAIIEPYLSKQWFVSVDSFRDSLRGFVNSEEIRIFPPEFVR
NYLTWVNNLKDWCISRQLWWGHRIPVWHNKHDENVICFDGEGGPEEVMRDPESWYQDP
DVLDTWFSSGLWPLTCFGWPDENSLDLKKFYPTAVLVTGHDILFFWVTRMVLMCSAMV
DTEPFSDVFLHGLIFGKSYREYDEKGEWFYVSGERKRDYDKGKALPKNVVAKWEKLSK
SKGNVIDPIEMIEAYGADAVRLTLCSCANRGEQIDLDYHLFEEYKNFINKLWNGARFI
FGHISELTSRDLEEGVNQDLLGLEDFYILDRFNELLDLIDGHYNCYSFDKIASLAYDF
FKNDLCSTYLEIIKPTLFGKQDSDQQRATKRKLLATLLINILGVLHPIVPYITETLFQ
KLKATLGTVENGKGDSVTGHAVSMLRSEACMVAEYPKPIHVAFPQGLRESFGIAERLV
YTIRNIRGEMQLDPREPLQAFVISSEKKELVDVCIPIMCALGGVKTVEQLAEAPKDSI
FSLGVVEGIQVGVILPPEHLAKERVRLEKEKTRLEKSIDSVSKLLASEDFRTRANPSL
VQAKKDSLRNSQRELQSILDKLASL"
misc_feature complement(337049..339859)
/gene="valS"
/locus_tag="CTDLC_0302"
/note="valyl-tRNA synthetase; Reviewed; Region: valS;
PRK05729"
/db_xref="CDD:235582"
misc_feature complement(<339287..339754)
/gene="valS"
/locus_tag="CTDLC_0302"
/note="catalytic core domain of valyl-tRNA synthetases;
Region: ValRS_core; cd00817"
/db_xref="CDD:185677"
misc_feature complement(339695..339706)
/gene="valS"
/locus_tag="CTDLC_0302"
/note="HIGH motif; other site"
/db_xref="CDD:185677"
misc_feature complement(338876..339256)
/gene="valS"
/locus_tag="CTDLC_0302"
/note="Leucyl-tRNA synthetase, Domain 2; Region:
tRNA-synt_1_2; pfam13603"
/db_xref="CDD:222257"
misc_feature complement(338060..>338827)
/gene="valS"
/locus_tag="CTDLC_0302"
/note="catalytic core domain of valyl-tRNA synthetases;
Region: ValRS_core; cd00817"
/db_xref="CDD:185677"
misc_feature complement(order(338174..338176,338300..338311,
338378..338380,338390..338395,338399..338404,
338489..338491,338498..338500))
/gene="valS"
/locus_tag="CTDLC_0302"
/note="active site"
/db_xref="CDD:185677"
misc_feature complement(338165..338179)
/gene="valS"
/locus_tag="CTDLC_0302"
/note="KMSKS motif; other site"
/db_xref="CDD:185677"
misc_feature complement(337640..338062)
/gene="valS"
/locus_tag="CTDLC_0302"
/note="Anticodon-binding domain of valyl tRNA synthetases;
Region: Anticodon_Ia_Val; cd07962"
/db_xref="CDD:153416"
misc_feature complement(order(337778..337780,337787..337792,
337814..337816,337835..337837,337844..337846,
337997..338002,338006..338011,338018..338023,
338030..338035,338039..338041,338048..338053,
338057..338059))
/gene="valS"
/locus_tag="CTDLC_0302"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153416"
misc_feature complement(order(337778..337780,337787..337792,
337802..337804,337997..338002,338006..338011,
338018..338020))
/gene="valS"
/locus_tag="CTDLC_0302"
/note="anticodon binding site; other site"
/db_xref="CDD:153416"
misc_feature complement(337049..337240)
/gene="valS"
/locus_tag="CTDLC_0302"
/note="Valyl tRNA synthetase tRNA binding arm; Region:
Val_tRNA-synt_C; pfam10458"
/db_xref="CDD:151031"
gene complement(339992..340468)
/locus_tag="CTDLC_0303"
/db_xref="GeneID:12387786"
CDS complement(339992..340468)
/locus_tag="CTDLC_0303"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812233.1"
/db_xref="GI:385244389"
/db_xref="GeneID:12387786"
/translation="MRYLLSFLRYCYSKWWAAAFSALCLGGCSQPALSSFLEFIDNDY
TAAAHLGIDRGCVTESVGQQLVVTWGLPSRFRDSLPVVLHVWVYYGNGEAAKFSYDVQ
HLSGYQVYTLKENDYQDRQGIISYKVSLTKDGKEILSRSHHLWMEVISLKAFSQLS"
gene complement(340428..340874)
/gene="atpK"
/locus_tag="CTDLC_0304"
/db_xref="GeneID:12387787"
CDS complement(340428..340874)
/gene="atpK"
/locus_tag="CTDLC_0304"
/EC_number="3.6.3.15"
/codon_start=1
/transl_table=11
/product="V-type sodium ATP synthase subunit K"
/protein_id="YP_005812234.1"
/db_xref="GI:385244390"
/db_xref="GeneID:12387787"
/translation="MSSERKYMIDVSVVGPVLAMALAMIGSAVGCGMAGVASHAVMSR
IDEGHGKIIGLSAMPSSQSIYGLIFMLLLNDAIKDGKVSAVSGIVMGIAVGSALLLSA
FMQGKCCVSAIQAYARSSAIYGKSFASIGIVESFALFAFVFALLLF"
misc_feature complement(340470..340853)
/gene="atpK"
/locus_tag="CTDLC_0304"
/note="V-type ATP synthase subunit K; Provisional; Region:
PRK09621"
/db_xref="CDD:181998"
misc_feature complement(340656..340841)
/gene="atpK"
/locus_tag="CTDLC_0304"
/note="ATP synthase subunit C; Region: ATP-synt_C;
pfam00137"
/db_xref="CDD:201028"
gene complement(340916..342865)
/gene="atpI"
/locus_tag="CTDLC_0305"
/db_xref="GeneID:12387788"
CDS complement(340916..342865)
/gene="atpI"
/locus_tag="CTDLC_0305"
/EC_number="3.6.3.15"
/codon_start=1
/transl_table=11
/product="V-type sodium ATP synthase subunit I"
/protein_id="YP_005812235.1"
/db_xref="GI:385244391"
/db_xref="GeneID:12387788"
/translation="MRVDVDKYLFIGREKSEFFSACREIGAVEFLSKSKLKDSEKVRK
LSEGLKVLNLLTKSCSPADLVSTKSGYLVTEQLLQEIFDLNQEITTLTESLKALGKEI
VRVKPLGDFSSEEIRELTLKTGLAVRFLYKRHIEGAPLEVEEENVFYLATAYNYDYYA
VIGIVSLSKDIFTEIEAPRSVNELREEEGHLQALLRKKKARVCELYAYREDLLEALCE
QCNEQSLQHAEVSAEDLFDDKVFSALGWVIVDRLDEVKKLCDSLGIYLERVQPDPDEV
IPTYLENHGLGALGESLVNIYDTPASTDKDPSLWVFFSFFVFFSMIINDAGYGLVFLA
TSLFLSFKARKQIKRSIALKRFLQMFMILGLGCVCWGGATTSFFGVSVSYTSPFREYS
LTHFLALKKAEYYLKERPKGYKELVHDYPILKEKKTPKEFLLAQSTSSGDSVYKAVVY
DKFIDNILMEIALLVGVVHLSLGMLRYCRQRYSSIGWVIFMCGAYMYLPIYLQAVSLI
HYALHIPYELGGLVGYYVAFIGLGVAILGGVIQRGLRGLDEITAVIQVFSDVLSYLRL
YALSLAGAMVGNTVMVMSERFSPAVGILIIIFGHTVNIALSIMGGVIHGLRLNFIEWY
HYSFDGGGKLLHPLKKVICQKSQNL"
misc_feature complement(340931..342865)
/gene="atpI"
/locus_tag="CTDLC_0305"
/note="V-type ATP synthase subunit I; Validated; Region:
PRK05771"
/db_xref="CDD:235600"
misc_feature complement(<342500..>342673)
/gene="atpI"
/locus_tag="CTDLC_0305"
/note="Protein of unknown function (DUF1319); Region:
DUF1319; pfam07028"
/db_xref="CDD:219273"
gene complement(342871..343482)
/gene="atpD"
/locus_tag="CTDLC_0306"
/db_xref="GeneID:12387789"
CDS complement(342871..343482)
/gene="atpD"
/locus_tag="CTDLC_0306"
/EC_number="3.6.3.14"
/codon_start=1
/transl_table=11
/product="V-type ATP synthase subunit D"
/protein_id="YP_005812236.1"
/db_xref="GI:385244392"
/db_xref="GeneID:12387789"
/translation="MSSQIKLTKNSYRAEKQKLNMLGMYLPTLKLKKALLQAEVQSAI
RLAAESTVTNEQARDRMYAFAELFSIPLYTDAVEQCFSVDILEKDVENIAGVEVPLLK
RVVLTSPEYSLLDTPIWLDSLLASVKEYVVSKIYAENAQERLLLLEEELRRVSIRVNL
FEKKLIPTTSQTLKKIAIFLSDRSITDVGQMKMAKKKIQQHKE"
misc_feature complement(342874..343482)
/gene="atpD"
/locus_tag="CTDLC_0306"
/note="V-type ATP synthase subunit D; Provisional; Region:
PRK02195"
/db_xref="CDD:179382"
gene complement(343467..344783)
/gene="atpB"
/locus_tag="CTDLC_0307"
/db_xref="GeneID:12387790"
CDS complement(343467..344783)
/gene="atpB"
/locus_tag="CTDLC_0307"
/EC_number="3.6.3.15"
/codon_start=1
/transl_table=11
/product="V-type sodium ATP synthase subunit B"
/protein_id="YP_005812237.1"
/db_xref="GI:385244393"
/db_xref="GeneID:12387790"
/translation="MQTIYTKITDIKGNLITVEAEGASLGELVQIERADGRSSYASVL
RFDARKVTLQVFGGTSGLSTGDKVIFLGRPMEVIYGDSLLGRRFNGTGKPIDREDECF
GEPIPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMR
IAAQTDADIVIIGGMGLTFVDYNFFVKESQRLGFADKCVMFIHKAVDAPVECVLIPDM
ALACAERFALEQKKNVLVLLTDMTAFADALKEMAITMDQIPANRGYPGSLYSDLAVRY
EKAVDIAQGGSITLISVTTMPGDDITHPVPDNTGFITEGQFYLKDNRIDPFGSLSRLK
QLVIGKKTREDHGDLANALIRLYADSRKSAERMSMGFKLSNWDKKLLAFSELFEARLM
SLEVNIPLEEALDIGWKILSQSFHSEEVGIKEQLIQKYWPKACLHK"
misc_feature complement(343473..344783)
/gene="atpB"
/locus_tag="CTDLC_0307"
/note="V-type ATP synthase subunit B; Provisional; Region:
PRK02118"
/db_xref="CDD:179373"
misc_feature complement(344568..344762)
/gene="atpB"
/locus_tag="CTDLC_0307"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:217261"
misc_feature complement(343785..344564)
/gene="atpB"
/locus_tag="CTDLC_0307"
/note="V/A-type ATP synthase (non-catalytic) subunit B.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found in
the membranes of vacuoles, the golgi...; Region:
V_A-ATPase_B; cd01135"
/db_xref="CDD:238555"
misc_feature complement(344319..344342)
/gene="atpB"
/locus_tag="CTDLC_0307"
/note="Walker A motif homologous position; other site"
/db_xref="CDD:238555"
misc_feature complement(344064..344075)
/gene="atpB"
/locus_tag="CTDLC_0307"
/note="Walker B motif; other site"
/db_xref="CDD:238555"
gene complement(344786..346561)
/gene="atpA"
/locus_tag="CTDLC_0308"
/db_xref="GeneID:12387791"
CDS complement(344786..346561)
/gene="atpA"
/locus_tag="CTDLC_0308"
/EC_number="3.6.3.14"
/codon_start=1
/transl_table=11
/product="V-type ATP synthase subunit alpha"
/protein_id="YP_005812238.1"
/db_xref="GI:385244394"
/db_xref="GeneID:12387791"
/translation="MVATSKQTTQGYVVEAYGNLLRVHVDGHVRQGEVAYVSVDDTWL
KAEIIEVVGDEVKIQVFEETQGISRGALVTFSGHLLEAELGPGLLQGIFDGLQNRLEI
LADTSLFLRRGEYVNAICRETVWAYTQKASVGSVLSRGDVLGTVKEGRFDHKIMVPFS
CFEEVTITWVISSGNYTVDTVVAKGRTSTGEELEFTMVQKWPIKQAFLEGEKVPSHEI
MDVGLRVLDTQIPVLKGGTFCTPGPFGAGKTVLQHHLSKYAAVDIVVLCACGERAGEV
VEILQEFPHLTDPHTGQSLMHRTCIICNTSSMPVAARESSIYLGITIAEYYRQMGLHI
LLLADSTSRWAQALREISGRLEEIPGEEAFPAYLASRIAAFYERGGAVKMKDGSEGSL
TICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDSVA
EILEKKVPGWGESVKQASRFLEEGAEIGKRIEVVGEEGISMEDMEIFLKSELYDFCYL
QQNAFDAEDCYCPFDRQIELFSLMNHIFNSRFCFDCPDNARSFFLELQSKIKTLNGQK
FLSEEYQKGLEVIYKLLESKMVQTV"
misc_feature complement(344789..346543)
/gene="atpA"
/locus_tag="CTDLC_0308"
/note="V-type ATP synthase subunit A; Provisional; Region:
PRK04192"
/db_xref="CDD:235248"
misc_feature complement(346331..346525)
/gene="atpA"
/locus_tag="CTDLC_0308"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:217261"
misc_feature complement(345227..346327)
/gene="atpA"
/locus_tag="CTDLC_0308"
/note="V/A-type ATP synthase catalytic subunit A. These
ATPases couple ATP hydrolysis to the build up of a H+
gradient, but V-type ATPases do not catalyze the reverse
reaction. The Vacuolar (V-type) ATPase is found in the
membranes of vacuoles, the golgi...; Region: V_A-ATPase_A;
cd01134"
/db_xref="CDD:238554"
misc_feature complement(345815..345838)
/gene="atpA"
/locus_tag="CTDLC_0308"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:238554"
misc_feature complement(345545..345559)
/gene="atpA"
/locus_tag="CTDLC_0308"
/note="Walker B motif; other site"
/db_xref="CDD:238554"
misc_feature complement(344876..345166)
/gene="atpA"
/locus_tag="CTDLC_0308"
/note="ATP synthase alpha/beta chain, C terminal domain;
Region: ATP-synt_ab_C; pfam00306"
/db_xref="CDD:215848"
gene complement(346555..347355)
/locus_tag="CTDLC_0309"
/db_xref="GeneID:12387792"
CDS complement(346555..347355)
/locus_tag="CTDLC_0309"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812239.1"
/db_xref="GI:385244395"
/db_xref="GeneID:12387792"
/translation="MNQCYFLSSFLSPQQPESPPLYSFQEINDLLALNFTDKDWQSYV
ILRRFFDLENFAFFWAGKSIPFSFGTITNSNVESLLRLQMWSDEWEFEDFFKDFLLRY
KTPQERLTHFSELVRDFLDHYQDYPSEFLRTYFRFKQDLRIILAGFRARVMQKDVSFV
LRDEDSSNPIVLHVLMQKDSPNYELPDEFFELRDVLGDYGRLPHMLNQTLSFYEFHKV
EEMSRDKYLNTDAILSRLTTYLMAIRSSWASVQKGKELINLMEKGIRW"
misc_feature complement(346564..347355)
/locus_tag="CTDLC_0309"
/note="Protein of unknown function (DUF2764); Region:
DUF2764; pfam10962"
/db_xref="CDD:220916"
gene complement(347522..348169)
/gene="atpE"
/locus_tag="CTDLC_0310"
/db_xref="GeneID:12387793"
CDS complement(347522..348169)
/gene="atpE"
/locus_tag="CTDLC_0310"
/EC_number="3.6.3.14"
/codon_start=1
/transl_table=11
/product="V-type ATP synthase subunit E"
/protein_id="YP_005812240.1"
/db_xref="GI:385244396"
/db_xref="GeneID:12387793"
/translation="MFFLVSDMADLSAQDKLKQICDALREETLKPAEEEAGSIVHNAR
EQAKRIVEEAKEEAQRIIRSAEETADQTLKKGEAALVQAGKRSLENLKQAVETKIFRE
SLGEWLDHVATDPEVSAKLVQALVQAVDAQGISGNLSAYIGKHVSARAVNEALGKEIT
SKLKEKGVSVGNFSGGAQLKVEERNWVLDMSSEVLLDLLTRFLQKDFREMIFQSC"
misc_feature complement(347528..348148)
/gene="atpE"
/locus_tag="CTDLC_0310"
/note="V-type ATP synthase subunit E; Provisional; Region:
PRK01005"
/db_xref="CDD:179204"
gene 348257..348967
/locus_tag="CTDLC_0311"
/db_xref="GeneID:12387794"
CDS 348257..348967
/locus_tag="CTDLC_0311"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812241.1"
/db_xref="GI:385244397"
/db_xref="GeneID:12387794"
/translation="MKRVILCSLLFASLPIVSKAAVEGKPLSRAAQLRERRKDLHVSG
KPSPRYALKKRALEAKKNKPSISWITYSNSTYSFLIPNTWQCIDDKTQLPEKLDVLFI
GKGAGGLTPTINSAHEIIHKTEDAYIEEILDYHRTNENTLESSIFAHIQAHSSNFTII
KTEKNTPWGRVFCLQGVTVIDHTAYVLTSTSTIDDYPNVSLALLKAASSFRLSEKEEA
ARGDAILEKALKDLQNGK"
gene complement(348975..349367)
/locus_tag="CTDLC_0312"
/db_xref="GeneID:12387795"
CDS complement(348975..349367)
/locus_tag="CTDLC_0312"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812242.1"
/db_xref="GI:385244398"
/db_xref="GeneID:12387795"
/translation="MLNKKDVMEKKKQALCFSCPYCCDGNVAFSVIDLENCLACDCCE
ASFMFDAEMCDAIRRFSALCLRIYEAKALLGEAAVSVSVQGQSIDVPFQLLFSRFPVF
LNLNLAGKLVRVRFMFDSLRGEVLYHRG"
gene complement(349391..350434)
/gene="tal"
/locus_tag="CTDLC_0313"
/db_xref="GeneID:12387796"
CDS complement(349391..350434)
/gene="tal"
/locus_tag="CTDLC_0313"
/EC_number="2.2.1.2"
/codon_start=1
/transl_table=11
/product="Transaldolase"
/protein_id="YP_005812243.1"
/db_xref="GI:385244399"
/db_xref="GeneID:12387796"
/translation="MNSIVFFGRLHLKSKIDKVFMSSQFDQLKLWSVLVGDTGDPALI
KTLGVQDATTNPSLILKVAQEPKYQSMLTEAISWGIRQNGDDVQTLTFVLDKIQVNLG
LEILKHVPGRVSLEIDARLSFNTEAMVQRAIFLSQLFEKMGGDKKRLLVKIPGTWEGI
CAAEVLESQGIACNVTLIFNLVQAIAAAKAKVTLVSPFVGRIYDWWIAAYGAEGYSIE
ADPGVASVANIYSYYKKFDIPTQIMAASFRTKEQVLALAGCDFLTISPKLLEELKKDQ
QPVERKLSVEEAKKLDIQPVELSESVFRFLMNEDAMATEKLAEGIRIFSGDTQILESA
VTEFIRQIAAQEA"
misc_feature complement(349412..350374)
/gene="tal"
/locus_tag="CTDLC_0313"
/note="transaldolase-like protein; Provisional; Region:
PTZ00411"
/db_xref="CDD:185601"
misc_feature complement(349439..350368)
/gene="tal"
/locus_tag="CTDLC_0313"
/note="Transaldolases including both TalA and TalB;
Region: Transaldolase_TalAB; cd00957"
/db_xref="CDD:188644"
misc_feature complement(order(349832..349834,349847..349849,
349907..349909,349913..349915,349979..349981,
350087..350089,350093..350095,350267..350272,
350276..350278,350324..350326))
/gene="tal"
/locus_tag="CTDLC_0313"
/note="active site"
/db_xref="CDD:188644"
misc_feature complement(order(349469..349471,349481..349483,
349490..349492,349508..349513,349523..349525,
349532..349534,350063..350065))
/gene="tal"
/locus_tag="CTDLC_0313"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188644"
misc_feature complement(349979..349981)
/gene="tal"
/locus_tag="CTDLC_0313"
/note="catalytic residue [active]"
/db_xref="CDD:188644"
gene complement(350486..354676)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/db_xref="GeneID:12387797"
CDS complement(350486..354676)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/EC_number="2.7.7.6"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_005812244.1"
/db_xref="GI:385244400"
/db_xref="GeneID:12387797"
/translation="MFREGSRDDAALVKEGLFDKLEIGIASDVTIRDKWSCGEIKKPE
TINYRTFKPEKGGLFCEKIFGPTKDWECYCGKYKKIKHKGIVCDRCGVEVTLSKVRRE
RMAHIELAVPIVHIWFFKTTPSRIGNVLGMTASDLERVIYYEEYVVIDPGNTDLVKKQ
LLNDAKYREVVEKWGKDAFVAKMGGEAVYDLLKSEDLESLLGELKERLRKTKSQQARM
KLAKRLKIVEGFVSSSNRPEWMVLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVI
NRNNRLKAILRLKTPEVIVRNEKRMLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEML
KGKNGRFRQNLLGKRVDYSGRSVIIVGPELKFNQCGLPKEMALELFEPFIIKRLKDQG
SVYTIRSAKKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGIQAFEPVLIEGKAI
RVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMAPDNIFLPSSGKPVATPSKD
MTLGIYYLMADPTYFPEEHGGKTKAFKDEVEVLRALNAGGFILKDEICGSRRDETGRG
IHIHEKIKVRIDGQIIETTPGRVFFNTIVPKELGFQNYSMPSKRISELILQCYKKVGL
EATVRFLDDLKELGFVQSTKAAISMGLKDVKIPEIKKEILKDAYDKVAVVKKQYEDGI
ITDGERHSKTISIWTEVSDLLSNALYSEIKKQTNSKHNPLFLMIDSGARGNKSQLKQL
GALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKGLADTALKTADSGYLTR
RLVDVAQDVIITERDCGTLNHIEVSTIRQGSEELLPLKDRVYGRTVSENIYQPGDKSN
VLAYAGDVLTSAQAEAIDDAGIESVKIRSTLTCESRRGVCAKCYGLNLANGRLIGLGE
AVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVAECDGILVYLDLRVVVDQEGN
NLVLNKMGALHLVQDEGRSLSEYKKLLSTKSIESLATFPVELGAKILVNDGAAVAAGQ
RIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVTNKNTGLVELIVKQHRGELHPQIA
IYADANMKELVGTYAIPSGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAE
LVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLIVQRG
DSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQ
MLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTE
SFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQHLEK
EQEDLVFDFDSEFESVAG"
misc_feature complement(353642..354625)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:218370"
misc_feature complement(351443..354619)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="DNA-directed RNA polymerase, beta' subunit,
predominant form; Region: rpoC_TIGR; TIGR02386"
/db_xref="CDD:233840"
misc_feature complement(353135..353965)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:214767"
misc_feature complement(352715..353203)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:218361"
misc_feature complement(352385..352630)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:218372"
misc_feature complement(<351851..351955)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature complement(351935..351937)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature complement(350579..>351025)
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature complement(order(350687..350692,350735..350737))
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature complement(order(350585..350587,350597..350602,
350609..350611,350627..350629,350645..350647))
/gene="rpoC"
/locus_tag="CTDLC_0314"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(354701..358459)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/db_xref="GeneID:12387798"
CDS complement(354701..358459)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/EC_number="2.7.7.6"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_005812245.1"
/db_xref="GI:385244401"
/db_xref="GeneID:12387798"
/translation="MFKCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERE
NIGLEEVFREIFPIKSYNEATILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT
DETGIKEEEVYMGTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGNVLFS
FRIIPYRGSWLEAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSV
EERSLRLEKDFVALVGKVLADNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIA
VGADENHPIIKMLAKDPTDSYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYN
LGRVGRYKLNKKLGFPLDDETLSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLA
NRRVRSVGELIQNHCRSGLARMEKIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDF
FSRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVRDVHASHYGRICPIET
PEGPNIGLITSLSSFAKINEFGFIETPYRVVRDGIVTDEIEYMTADVEEECVIAQASA
ELDEYDMFKTPVCWARYKGEAFEADTSTVTHMDVSPKQLVSVVTGLIPFLEHDDANRA
LMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKDSGAIIVAQEDGVVEYVDSYEIVVAKK
NNPTLKDRYQLKKFLRSNSGTCINQTPLCSVGDVVTHGDVLADGPATDKGELALGKNV
LVAFMPWYGYNFEDAIIISERLIKQDAYTSIYIEEFELTARDTKLGKEEITRDIPNVS
EEVLANLGEDGVVRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDA
SLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKEYKSQLAQLKVEHRE
KLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETIELLERESLVDLLMAPCDMYDVL
KDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQVKVYVASKRKLQVGDKMAG
RHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGI
YVKTPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYMLKLSHL
IADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILTVKSD
DVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA"
misc_feature complement(357104..358399)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RNA polymerase beta subunit; Region:
RNA_pol_Rpb2_1; pfam04563"
/db_xref="CDD:191028"
misc_feature complement(<357902..358396)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl17585"
/db_xref="CDD:248139"
misc_feature complement(357269..358039)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:218151"
misc_feature complement(<355799..357694)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="DNA-directed RNA polymerase, beta subunit; Region:
rpoB; TIGR02013"
/db_xref="CDD:233685"
misc_feature complement(<356291..>357370)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature complement(<355835..356479)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:215994"
misc_feature complement(order(356312..356314,356318..356326,
356336..356338,356342..356344))
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(354722..>355453)
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature complement(order(355064..355066,355070..355093,
355304..355309,355313..355315,355322..355330,
355403..355405,355409..355411))
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(order(354722..354724,354728..354739,
354743..354745,354749..354754,354758..354760,
354764..354766,354776..354778,354845..354847,
354857..354874,354878..354895,354899..354901,
354905..354910,354914..354916,354926..354934,
354995..355000,355004..355012,355019..355021,
355058..355060,355064..355072,355094..355096,
355175..355177,355226..355228,355238..355240,
355253..355255,355262..355264,355271..355273,
355277..355279,355343..355345,355349..355351,
355355..355357))
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(order(355088..355090,355331..355333))
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(order(355055..355057,355106..355108,
355199..355201,355205..355210,355289..355291,
355328..355330))
/gene="rpoB"
/locus_tag="CTDLC_0315"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
gene complement(358820..359290)
/gene="rplL"
/locus_tag="CTDLC_0316"
/db_xref="GeneID:12387799"
CDS complement(358820..359290)
/gene="rplL"
/locus_tag="CTDLC_0316"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L12"
/protein_id="YP_005812246.1"
/db_xref="GI:385244402"
/db_xref="GeneID:12387799"
/translation="MLFLVSTRKQKKLKSSVNILKNKGDKVTTESLETLVEQLSGLTV
LELSQLKKLLEEKWDVTAAAPVVAVAGAAAAGDAPASAEPTEFAVILEDVPSDKKIGV
LKVVREVTGLALKEAKEMTEGLPKTVKEKTSKSDAEDTVKKLQEAGAKAVAKGL"
misc_feature complement(358835..>359044)
/gene="rplL"
/locus_tag="CTDLC_0316"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature complement(order(358937..358939,358946..358951,
358970..358972,358979..358984,358991..358996))
/gene="rplL"
/locus_tag="CTDLC_0316"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature complement(order(358937..358939,358946..358951,
358970..358972,358979..358981,358991..358993))
/gene="rplL"
/locus_tag="CTDLC_0316"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature complement(order(358970..358972,358979..358984,
358991..358993))
/gene="rplL"
/locus_tag="CTDLC_0316"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene complement(359244..359762)
/gene="rplJ"
/locus_tag="CTDLC_0317"
/db_xref="GeneID:12387800"
CDS complement(359244..359762)
/gene="rplJ"
/locus_tag="CTDLC_0317"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_005812247.1"
/db_xref="GI:385244403"
/db_xref="GeneID:12387800"
/translation="MKEEKKLLLREVEEKITASQGFILLRYLGFTAAHSRSFRNNLSG
VSAEFEVLKKKIFFKALETSGVEMDPEGGEGHLGVVFAYGDPVSAAKQVLDFNKQHND
SLVFLAGRIDNASLSGREVEAVAKLPSMKELRQQVVGLIAAPMSQVAGIMNSVLSGVI
SCVDQKAEKTQE"
misc_feature complement(359292..359717)
/gene="rplJ"
/locus_tag="CTDLC_0317"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:240223"
misc_feature complement(order(359586..359588,359595..359606))
/gene="rplJ"
/locus_tag="CTDLC_0317"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:240223"
misc_feature complement(order(359295..359300,359304..359309,
359316..359324,359328..359345,359349..359354,
359361..359366,359373..359375,359421..359423,
359430..359432,359502..359504))
/gene="rplJ"
/locus_tag="CTDLC_0317"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:240223"
gene complement(359784..360482)
/gene="rplA"
/locus_tag="CTDLC_0318"
/db_xref="GeneID:12387801"
CDS complement(359784..360482)
/gene="rplA"
/locus_tag="CTDLC_0318"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_005812248.1"
/db_xref="GI:385244404"
/db_xref="GeneID:12387801"
/translation="MTKHGKRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDV
SVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVE
KIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGK
IEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTM
GPGVTVDTRELIAL"
misc_feature complement(359811..360410)
/gene="rplA"
/locus_tag="CTDLC_0318"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:238235"
misc_feature complement(order(359820..359822,359826..359831,
359967..359969,359973..359975,359979..359981,
360342..360344,360348..360350,360354..360356,
360360..360362,360369..360377))
/gene="rplA"
/locus_tag="CTDLC_0318"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238235"
gene complement(360505..360936)
/gene="rplK"
/locus_tag="CTDLC_0319"
/db_xref="GeneID:12387802"
CDS complement(360505..360936)
/gene="rplK"
/locus_tag="CTDLC_0319"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_005812249.1"
/db_xref="GI:385244405"
/db_xref="GeneID:12387802"
/translation="MNMSNKKIIKIIKLQIPGGKANPAPPIGPALGAAGVNIMGFCKE
FNAATQDRPGDLLPVVITVYSDKTFSFVMKQSPVSSLIKKALGLESGSKIPNRNKVGK
LTRAQITVIAEQKMKDMDVVLLESAERMVEGTARSMGVDVE"
misc_feature complement(360508..360897)
/gene="rplK"
/locus_tag="CTDLC_0319"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature complement(360511..360897)
/gene="rplK"
/locus_tag="CTDLC_0319"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature complement(order(360838..360840,360850..360852))
/gene="rplK"
/locus_tag="CTDLC_0319"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature complement(order(360523..360531,360535..360540,
360547..360552,360559..360561,360571..360579,
360592..360594,360667..360669,360688..360690,
360700..360708,360838..360840))
/gene="rplK"
/locus_tag="CTDLC_0319"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature complement(order(360574..360579,360586..360591,
360721..360726,360730..360732,360742..360753,
360757..360759))
/gene="rplK"
/locus_tag="CTDLC_0319"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature complement(order(360640..360642,360649..360651))
/gene="rplK"
/locus_tag="CTDLC_0319"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene complement(361036..361584)
/gene="nusG"
/locus_tag="CTDLC_0320"
/db_xref="GeneID:12387803"
CDS complement(361036..361584)
/gene="nusG"
/locus_tag="CTDLC_0320"
/note="protein NusG"
/codon_start=1
/transl_table=11
/product="Transcription antitermination protein"
/protein_id="YP_005812250.1"
/db_xref="GI:385244406"
/db_xref="GeneID:12387803"
/translation="MFKWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENV
MEVKKGEHKIVEKYIWPGYLLVKMHLTDESWSYVKKTQGVVEFLGGGAPVALSEEEVK
NILADLEEKKSGVVQKHKFEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGR
ETRVDDLEFWQVEEVVPGQESE"
misc_feature complement(361261..361578)
/gene="nusG"
/locus_tag="CTDLC_0320"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature complement(361063..361575)
/gene="nusG"
/locus_tag="CTDLC_0320"
/note="transcription termination/antitermination factor
NusG; Region: nusG; TIGR00922"
/db_xref="CDD:233188"
misc_feature complement(order(361273..361275,361297..361299,
361390..361392,361396..361398,361405..361407,
361465..361467,361567..361569))
/gene="nusG"
/locus_tag="CTDLC_0320"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature complement(361066..361227)
/gene="nusG"
/locus_tag="CTDLC_0320"
/note="NusG contains an NGN domain at its N-terminus and
KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
/db_xref="CDD:240515"
misc_feature complement(order(361072..361077,361087..361089,
361093..361101,361105..361113,361138..361140,
361174..361176,361183..361197))
/gene="nusG"
/locus_tag="CTDLC_0320"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
misc_feature complement(361186..361197)
/gene="nusG"
/locus_tag="CTDLC_0320"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
gene complement(361588..361836)
/gene="secE"
/locus_tag="CTDLC_0321"
/db_xref="GeneID:12387804"
CDS complement(361588..361836)
/gene="secE"
/locus_tag="CTDLC_0321"
/note="protein SecE"
/codon_start=1
/transl_table=11
/product="Protein translocase subunit"
/protein_id="YP_005812251.1"
/db_xref="GI:385244407"
/db_xref="GeneID:12387804"
/translation="MGQDHRRKFLKKVSFVKKQAAFAGNFIEEIKKIEWVNKRDLKRY
VKIVLMNIFGFGFSIYCVDLALRKSLSLFGKVTSFFFG"
misc_feature complement(361621..361836)
/gene="secE"
/locus_tag="CTDLC_0321"
/note="Preprotein translocase subunit SecE [Intracellular
trafficking and secretion]; Region: SecE; COG0690"
/db_xref="CDD:223762"
gene complement(361866..361938)
/locus_tag="CTDLC_r029"
/db_xref="GeneID:12387805"
tRNA complement(361866..361938)
/locus_tag="CTDLC_r029"
/product="tRNA-Trp"
/db_xref="GeneID:12387805"
gene complement(361979..363178)
/gene="tuf"
/locus_tag="CTDLC_0322"
/db_xref="GeneID:12387806"
CDS complement(361979..363178)
/gene="tuf"
/locus_tag="CTDLC_0322"
/codon_start=1
/transl_table=11
/product="Protein Translation Elongation Factor Tu
(EF-TU)"
/protein_id="YP_005812252.1"
/db_xref="GI:385244408"
/db_xref="GeneID:12387806"
/translation="MRIFEMSKETFQRNKPHINIGTIGHVDHGKTTLTAAITRALSGD
GLADFRDYSSIDNTPEEKARGITINASHVEYETANRHYAHVDCPGHADYVKNMITGAA
QMDGAILVVSATDGAMPQTKEHILLARQVGVPYIVVFLNKIDMISEEDAELVDLVEME
LVELLEEKGYKGCPIIRGSALKALEGDAAYIEKVRELMQAVDDNIPTPEREIDKPFLM
PIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGLRDTKETIVTGVEMFRKELPEGRA
GENVGLLLRGIGKNDVERGMVVCLPNSVKPHTQFKCAVYVLQKEEGGRHKPFFTGYRP
QFFFRTTDVTGVVTLPEGIEMVMPGDNVEFEVQLISPVALEEGMRFAIREGGRTIGAG
TISKIIA"
misc_feature complement(361982..363163)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="elongation factor Tu; Reviewed; Region: PRK12735"
/db_xref="CDD:183708"
misc_feature complement(362555..363133)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature complement(363086..363109)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature complement(order(362624..362629,362705..362707,
362717..362719,362810..362812,362819..362830,
362834..362839,362906..362911,362963..362968,
363050..363052,363062..363067,363074..363076,
363083..363088,363098..363100,363104..363106))
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature complement(order(362636..362644,362747..362749,
362753..362758,363023..363025,363083..363100))
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature complement(362966..362998)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature complement(362978..362980)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature complement(362912..362923)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature complement(362861..362917)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature complement(362747..362758)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature complement(362636..362644)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature complement(362273..362533)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature complement(361997..362266)
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature complement(order(362006..362008,362036..362044,
362162..362164,362216..362224,362228..362230))
/gene="tuf"
/locus_tag="CTDLC_0322"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene complement(363209..363280)
/locus_tag="CTDLC_r028"
/db_xref="GeneID:12387807"
tRNA complement(363209..363280)
/locus_tag="CTDLC_r028"
/product="tRNA-Thr"
/db_xref="GeneID:12387807"
gene complement(363511..363732)
/gene="infA"
/locus_tag="CTDLC_0323"
/db_xref="GeneID:12387808"
CDS complement(363511..363732)
/gene="infA"
/locus_tag="CTDLC_0323"
/codon_start=1
/transl_table=11
/product="Bacterial Protein Translation Initiation Factor
1 (IF-1)"
/protein_id="YP_005812253.1"
/db_xref="GI:385244409"
/db_xref="GeneID:12387808"
/translation="MAKKEDTIVLEGRVEELLPGMHFRVMLENGVPITAHLCGKMRMS
NIRLLVGDRVTVEMSTYDLTKARVVYRHR"
misc_feature complement(363520..363711)
/gene="infA"
/locus_tag="CTDLC_0323"
/note="S1_IF1: Translation Initiation Factor IF1, S1-like
RNA-binding domain. IF1 contains an S1-like RNA-binding
domain, which is found in a wide variety of RNA-associated
proteins. Translation initiation includes a number of
interrelated steps preceding the...; Region: S1_IF1;
cd04451"
/db_xref="CDD:239898"
misc_feature complement(order(363532..363534,363538..363540,
363589..363600,363613..363618,363625..363627,
363661..363663,363679..363687))
/gene="infA"
/locus_tag="CTDLC_0323"
/note="rRNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239898"
misc_feature complement(order(363520..363522,363613..363615,
363625..363627))
/gene="infA"
/locus_tag="CTDLC_0323"
/note="predicted 30S ribosome binding site; other site"
/db_xref="CDD:239898"
gene 364144..365055
/locus_tag="CTDLC_0324"
/db_xref="GeneID:12387809"
CDS 364144..365055
/locus_tag="CTDLC_0324"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812254.1"
/db_xref="GI:385244410"
/db_xref="GeneID:12387809"
/translation="MVKAAHPLHSSISGALPLHSSRGGAYHDSLGDLHSPISLTPPAL
SVLTPEPAQSKSRVQAVANTIGDFLQRNWKHLLLYILAWSLILICHSSVALVLSIWLG
IGFGAGVVLGIISANFLDKENKYPHLNSLWNITNHGLQQLDPNGTRQVLLATVIASIS
ALIYASPQAIGFIIGAFLGHQTSSLAVYGYRFKSGPGYIADQELFDKQEKRIRQAIMQ
CRLIRNQMILQRRLDTLQKRAHRPGQSQTITIRPLTNRISLPEEMEHEILGKKPQVVI
AMLDNKIAQLNQSLVQLYDRPTRVIEQ"
gene 365052..365498
/locus_tag="CTDLC_0325"
/db_xref="GeneID:12387810"
CDS 365052..365498
/locus_tag="CTDLC_0325"
/codon_start=1
/transl_table=11
/product="SufE protein probably involved in Fe-S center
assembly"
/protein_id="YP_005812255.1"
/db_xref="GI:385244411"
/db_xref="GeneID:12387810"
/translation="MILTTPSEHKACLEKQEKAVALLFPENFVKDTFYKQLLQIGRTA
KPFPKEFLTKENLVLGCQSDLYLHGEFKNNAAFFFTYTEALISSGVAVLFSDIYSGET
PETILTCKPLFFEKLSRHLSMGRSRGGESLFLNMQRIAVQYLARKT"
misc_feature 365067..365483
/locus_tag="CTDLC_0325"
/note="Cysteine desulfurase SufE subunit
[Posttranslational modification, protein turnover,
chaperones]; Region: sufE; COG2166"
/db_xref="CDD:225077"
gene complement(365550..367241)
/locus_tag="CTDLC_0326"
/db_xref="GeneID:12387811"
CDS complement(365550..367241)
/locus_tag="CTDLC_0326"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812256.1"
/db_xref="GI:385244412"
/db_xref="GeneID:12387811"
/translation="MGGDSSPSSDLIDLSLDSAANRRSGVRVCDFSDDDDDDNRIPFV
EVGYVNASGLTHRSVWGESFQLSELFHQPVTAIPNAGGMACNLLARGLGVAGCFPISA
HHPTVQALLRAWDRFFSRVSDGRFLQIYYGDGGLFVERALQLISCPLQRARIRVVGIN
PSFFVTVSDNRHFYTSPGSCGRILDMSGYLSARRDGCVSHVPFSPHSQSITPGVGDAC
FELGLRMEFIRLAGLSSLSAASSPTSEDSDSSRLQLVRVVSSEDSVAFARLYAALNED
MTSSVRAANPFPFSYVRLILLLTTLCRHTLTTTKAAYSYTPVSWEALDMLDSGFTASY
VGGVMELSCGYGVTIQLLLQNDPRQSCLRNLFFWMESTLTPVILLDIAERHWPALWDR
VLGLGMRITTPSVYREERARVSESNSQAVELFGDDRRDRYRSRQHAAVGTSVELVSVV
CGALVQLMFLGIDGFSLRLPEICREVPCNNTSTPNSTVIANSTTPSLNNTSTCSGNST
TRPVLPSITGIYETDVQTTGVARTLNVIRMIWCGVMLLYFLYTAFRLVRNARRRN"
misc_feature complement(365556..367160)
/locus_tag="CTDLC_0326"
/note="Protein of unknown function (DUF687); Region:
DUF687; pfam05095"
/db_xref="CDD:147328"
gene complement(367606..367788)
/locus_tag="CTDLC_032602"
/db_xref="GeneID:12387812"
CDS complement(367606..367788)
/locus_tag="CTDLC_032602"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812257.1"
/db_xref="GI:385244413"
/db_xref="GeneID:12387812"
/translation="MNTLSFRNAFALISESGLQQQFSGCVCSQMIASYEVVFSQMMHP
VTKRWVSLTEGWTEGG"
gene 368395..368467
/locus_tag="CTDLC_r003"
/db_xref="GeneID:12387813"
tRNA 368395..368467
/locus_tag="CTDLC_r003"
/product="tRNA-Met"
/db_xref="GeneID:12387813"
gene complement(368508..369134)
/gene="trpC"
/locus_tag="CTDLC_0327"
/db_xref="GeneID:12387814"
CDS complement(368508..369134)
/gene="trpC"
/locus_tag="CTDLC_0327"
/EC_number="5.3.1.24"
/codon_start=1
/transl_table=11
/product="N-(5'-phosphoribosyl)anthranilate isomerase"
/protein_id="YP_005812258.1"
/db_xref="GI:385244414"
/db_xref="GeneID:12387814"
/translation="MKVKICGITHPDDAREAAKAGADYIGMIFAKDSRRCVSEEKAKY
IVEAIQEGNSEPVGVFPEHSVEEILAITETTGITSIQLSGEDILFKFSQLREHFSIFY
VVSVYSNGQPSAALPPMNDAVTVVYDHIGGERGSPFDWKAFSPFQHNNWMLGGGVNLW
NIKEGISLLSPRGIDVSSGVECPGILRKDIFLMQALINSAKELSSSTL"
misc_feature complement(368535..369128)
/gene="trpC"
/locus_tag="CTDLC_0327"
/note="Phosphoribosylanthranilate isomerase (PRAI)
catalyzes the fourth step of the tryptophan biosynthesis,
the conversion of N-(5'- phosphoribosyl)-anthranilate
(PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose
5-phosphate (CdRP). Most PRAIs are...; Region: PRAI;
cd00405"
/db_xref="CDD:238237"
misc_feature complement(order(368601..368606,368610..368612,
368751..368753,368886..368888,368892..368894,
369051..369053,369117..369119,369123..369125))
/gene="trpC"
/locus_tag="CTDLC_0327"
/note="active site"
/db_xref="CDD:238237"
gene 369331..370155
/gene="tpiA"
/locus_tag="CTDLC_0328"
/db_xref="GeneID:12387815"
CDS 369331..370155
/gene="tpiA"
/locus_tag="CTDLC_0328"
/EC_number="5.3.1.1"
/codon_start=1
/transl_table=11
/product="triosephosphate isomerase"
/protein_id="YP_005812259.1"
/db_xref="GI:385244415"
/db_xref="GeneID:12387815"
/translation="MFTDKETHRKPFPTWAHLLHSEPSKQFVFGNWKMNKTLTEAQTF
LKSFISSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEIS
APMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESG
ATQDILLNQLTTGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASL
FSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQIDIP"
misc_feature 369409..370137
/gene="tpiA"
/locus_tag="CTDLC_0328"
/note="Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually...; Region: TIM; cd00311"
/db_xref="CDD:238190"
misc_feature 369412..370143
/gene="tpiA"
/locus_tag="CTDLC_0328"
/note="triosephosphate isomerase; Provisional; Region:
PRK14565"
/db_xref="CDD:237758"
misc_feature order(369421..369423,369427..369429,369682..369684,
369892..369894,369910..369912,370030..370032,
370087..370089,370093..370098)
/gene="tpiA"
/locus_tag="CTDLC_0328"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238190"
misc_feature order(369421..369423,369430..369432,369529..369537,
369541..369543,369550..369552,369589..369591,
369643..369645,369652..369657,369688..369693)
/gene="tpiA"
/locus_tag="CTDLC_0328"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238190"
misc_feature order(369427..369429,369682..369684,369892..369894)
/gene="tpiA"
/locus_tag="CTDLC_0328"
/note="catalytic triad [active]"
/db_xref="CDD:238190"
gene 370091..371719
/gene="xseA"
/locus_tag="CTDLC_0329"
/db_xref="GeneID:12387816"
CDS 370091..371719
/gene="xseA"
/locus_tag="CTDLC_0329"
/EC_number="3.1.11.6"
/codon_start=1
/transl_table=11
/product="Exodeoxyribonuclease VII large subunit"
/protein_id="YP_005812260.1"
/db_xref="GI:385244416"
/db_xref="GeneID:12387816"
/translation="MEEPLYLQRISYPLYNKSISHNSHVPMSITSPPIEVSVLTDSIK
NLLEKNFLRVVVKGELSNVSLQTSGHLYFAIKDSKAVLNGAFFHFRSKYFDRKPKDGD
YVILHGKLTVYAPRGQYQIVAYALTFSGEGNLLQQFEERKQRLAAEGYFDPKRKKPLP
SGARVIGVITSPTGAVIQDILRVLSRRCHQFQVILYPVTVQGATAAQEISQAIQFFNQ
NSMGVHALIIARGGGSIEDLWAFNEEELVKSIVASSIPIISAVGHETDFTLCDFASDV
RAPTPSAAAEIVCKSSDQYRQELQNLRRYVLSHARQFIAAKKNLLTHWQRHLASVDFY
HTAQQTLDYTRAALERGIETKLEYYKQRFAQYRRWLKSDVLIRIEKHLADLNQSLMLS
IKNKIYTKKTSLNQLYTSCLKNELLNLQHHTQHSRNILSQLSRRLHIAIASSQQTHQE
CLVRLQNELSFTIHHLLTKAKERCQAIQEQASSLNPKNVLKRGFAQLFDFNKHFVIIS
AESLKQSDLVRVCLQDGEAVVSVKEVWLNNDKKG"
misc_feature 370181..371686
/gene="xseA"
/locus_tag="CTDLC_0329"
/note="exodeoxyribonuclease VII large subunit; Reviewed;
Region: xseA; PRK00286"
/db_xref="CDD:178962"
misc_feature 370247..370480
/gene="xseA"
/locus_tag="CTDLC_0329"
/note="ExoVII_LU_OBF: A subfamily of OB folds
corresponding to the N-terminal OB-fold domain of
Escherichia coli exodeoxyribonuclease VII (ExoVII) large
subunit. E. coli ExoVII is composed of two non-identical
subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF;
cd04489"
/db_xref="CDD:72961"
misc_feature order(370253..370255,370397..370399,370403..370405,
370409..370411,370469..370471)
/gene="xseA"
/locus_tag="CTDLC_0329"
/note="generic binding surface II; other site"
/db_xref="CDD:72961"
misc_feature order(370268..370276,370304..370315,370319..370321,
370337..370345,370349..370351,370394..370396,
370415..370423,370448..370456)
/gene="xseA"
/locus_tag="CTDLC_0329"
/note="generic binding surface I; other site"
/db_xref="CDD:72961"
gene 371928..372200
/locus_tag="CTDLC_0330"
/db_xref="GeneID:12387817"
CDS 371928..372200
/locus_tag="CTDLC_0330"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812261.1"
/db_xref="GI:385244417"
/db_xref="GeneID:12387817"
/translation="MQEISVPEASHLDTVIQRLLVLQKALEDCHSVEAILAIYEEMFS
LIQEGETNLNHVEQLSFQLQLNPDGSVAVDTSGNPIKHPFIPGESV"
gene 372197..374119
/gene="dxs"
/locus_tag="CTDLC_0331"
/db_xref="GeneID:12387818"
CDS 372197..374119
/gene="dxs"
/locus_tag="CTDLC_0331"
/EC_number="2.2.1.7"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose-5-phosphate synthase"
/protein_id="YP_005812262.1"
/db_xref="GI:385244418"
/db_xref="GeneID:12387818"
/translation="MTYSLLPHIHSPQDLHALSLDKLPVLCDEIRNKIIESLSLTGGH
LASNLGGVELTVALHYVFSSPDDQFIFDVGHQSYVHKLLTGRNTEAFSNIRHDNGLSG
FTTPQESNHDIFFSGHAGNALSLALGLAKGSSNSSSHILPILGDAAFSCGLTLEALNN
IPADLSKFIIVLNDNQMSISENVGNIPQGISHWMYPQKISKLSQKIHSWIQNLPSFLH
KKKTLSHKVDIALKSLSHPLFEQFGLHYVGPIDGHNVKKLVQALQMIKDQPQPILFHV
CTVKGNGLAEAERDPIRYHGVKAHFQNTSLKKTSGNVELQTPISFPQHAGNILCRLGK
KYPQLQVVTPAMSLGSCLEDFRKQFPDRFTDVGIAEGHAVTFSAGIARSGTPVCCSIY
STFLHRAMDNVFHDVCMQELPVIFAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQ
PRNALVLERLFFSSLLWKSPCAIRYPNIPANEKASNSFFPFSPILPGEAEILCQGDDL
LLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEH
SIHGGLGSEFLLFLNQHNIKADVLSLGVPDMFIPHGNPETILNLIGLTSDHITQRILS
HFKFSTPIPIERFFKA"
misc_feature 372200..374089
/gene="dxs"
/locus_tag="CTDLC_0331"
/note="Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism]; Region: Dxs; COG1154"
/db_xref="CDD:224076"
misc_feature 372212..373030
/gene="dxs"
/locus_tag="CTDLC_0331"
/note="1-deoxy-D-xylulose-5-phosphate synthase; Region:
DXP_synthase_N; pfam13292"
/db_xref="CDD:222031"
misc_feature order(372545..372547,372629..372640,372719..372721,
372725..372727)
/gene="dxs"
/locus_tag="CTDLC_0331"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:238318"
misc_feature 373163..373624
/gene="dxs"
/locus_tag="CTDLC_0331"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature order(373205..373207,373211..373213,373229..373231,
373280..373282,373289..373291,373295..373312,
373319..373324,373328..373336,373388..373390,
373397..373402,373475..373477,373484..373486,
373532..373537,373598..373600)
/gene="dxs"
/locus_tag="CTDLC_0331"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(373229..373231,373289..373291,373298..373306,
373385..373390,373394..373396,373475..373477,
373481..373483,373508..373513,373517..373522,
373526..373528)
/gene="dxs"
/locus_tag="CTDLC_0331"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(373298..373300,373304..373306,373379..373381,
373388..373390)
/gene="dxs"
/locus_tag="CTDLC_0331"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature 373685..374050
/gene="dxs"
/locus_tag="CTDLC_0331"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:217227"
gene 374216..375673
/gene="pykF"
/locus_tag="CTDLC_0332"
/db_xref="GeneID:12387819"
CDS 374216..375673
/gene="pykF"
/locus_tag="CTDLC_0332"
/EC_number="2.7.1.40"
/codon_start=1
/transl_table=11
/product="Pyruvate kinase"
/protein_id="YP_005812263.1"
/db_xref="GI:385244419"
/db_xref="GeneID:12387819"
/translation="MIARTKIICTIGPATNTPEMLEKLLDAGMNVARLNFSHGTHESH
GRTIAILKELREKRQVPLAIMLDTKGPEIRLGQVESPIKVQPGDRLTLVSKEILGSKE
SGVTLYPSCVFPYVRERAPVLIDDGYIQAVVVNAQEHMVEIEFQNSGEIKSNKSLSIK
DIDVALPFMTEKDIADLKFGVEQELDLIAASFVRCNEDIDSMRKVLESFGRPNMPIIA
KIENHLGVQNFQEIARAADGIMIARGDLGIELSIVEVPGLQKFMARASRETGRFCITA
TQMLESMIRNPLPTRAEVSDVANAIYDGTSAVMLSGETALGAHPVHAVKTMRSIIQET
EKTFDYHAFFQLNDKNSALKVSPYLEAIGFSGIQIAEKASAKAIIVYTQTGGSPMFLS
KYRPYLPIIAVTPNRNVYYRLAVEWGVYPMLTLESNRTVWRHQACVYGVEKGILSNYD
KILVFSRGAGMQDTNNLTLTTVHDVLSPSLDEIVP"
misc_feature 374225..375631
/gene="pykF"
/locus_tag="CTDLC_0332"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl17342"
/db_xref="CDD:247896"
misc_feature 374225..375622
/gene="pykF"
/locus_tag="CTDLC_0332"
/note="pyruvate kinase; Region: pyruv_kin; TIGR01064"
/db_xref="CDD:233257"
misc_feature order(374225..374230,374396..374398,374402..374404,
374426..374437,374684..374689,374705..374707,
374714..374728,374771..374773,374795..374797,
374816..374818,374852..374854,374960..374962,
375014..375019,375029..375031,375125..375127,
375131..375133,375218..375220,375224..375229,
375392..375394,375398..375400,375404..375406,
375437..375439,375446..375451,375455..375457,
375461..375469)
/gene="pykF"
/locus_tag="CTDLC_0332"
/note="domain interfaces; other site"
/db_xref="CDD:238178"
misc_feature order(374312..374314,374318..374320,374414..374416,
374789..374791,374870..374872,374876..374878,
374948..374950,375044..375046)
/gene="pykF"
/locus_tag="CTDLC_0332"
/note="active site"
/db_xref="CDD:238178"
gene 375696..381056
/gene="uvrA"
/locus_tag="CTDLC_0333"
/db_xref="GeneID:12387820"
CDS 375696..381056
/gene="uvrA"
/locus_tag="CTDLC_0333"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit A"
/protein_id="YP_005812264.1"
/db_xref="GI:385244420"
/db_xref="GeneID:12387820"
/translation="MSSIVRLSGITVRNLKNITVEFCPREIVLFTGVSGSGKSSLAFN
TIYAAGRKRYLATLPSFFATKLDSLPDPSVKKIEGLSPTVAVKQNFFEQHIHATVGST
TEINSYLALLFSLEGQAYDPVTLHPLTLYSKEKILSEIAAIPDGTQLTLLAPLPARDV
LTVRECLRQGFTKVLIDEEVVPIHKFLTTGIPVPGQLIVDTLIKNTSNTPRLKVSLFT
TLDIGHGECSLHFDNQKRVFSTQATLPETQQTYAPLSPDLFSSHSHKDRCPQCQGSGI
FISIDDPCIIQQTLSIEDNCCPFAGNCSTFLYRTIYQSLADSLGFSLSTPWQNLSPEI
QHIFLYGKEGLSIPVKLFDGTLGKKTQTHKQWKGVLNEIGEKIRFSNKPARYLPKGTS
YTVCPRCNKTGLSDYANATRWHGKSFADFQQMSLQELFIFLNQLPEKELAIEEVIQGF
KSRLTILIDLGLPYLSPERAIDTLSGGERERTALAKHLGAELIGVMYILDEPSIGLHP
QDTHKLMNVIRRLRDQGNTVLLVEHDEQMISLADRVIDIGPGAGIFGGEVVFNGSPRE
FLAKSDSLTAQYLRQEQHISVPAKRTNSLGTITLSKANKHNLKDLTVSIPLGQMTVVT
GVSGSGKSSLINDTLVPCVEEFIEQGFCSTLSIQGALSRLVHINRDLPGRSQRSIPLT
YIKAFDEVRQLFAEQPRCKTLGLTKSHFSFNTPLGACAECGGLGSITTTDNRDSITCP
SCLGKRFLPQVLEVRYKNKTIADILEMTAYEAKNFFLDEPSIHQKIETLCTLGLQYLP
LGRPLYSLSGGEIQRLKLAYELLAPVKHPTLYVLDEPTTGLHTHDVKQLIYVVQSLIH
QGHSVIIIEHNMHVVKVADYILELGPEGGNKGGYLIASCSPEELIHKHTPTAIALRPF
LSSPQELPYLPDPSPKPPVPAAITIANAHQHNLKHIDLSIPRYALTAVTGPSASGKHS
LVFDILHAAGNIAYAELFPPYIRQALIKKTPLPAVDKVTGLSPVIAIEKTSASRNSNH
SVASALEISEMLESLFTRIGHPYSPISGDTLRTISPETIAEELLTHYTKGYVTITVPF
PKEEEFFSYTQEMLQEGFLKLYANEQFYDLDGPFPTSLENPALVIHHVKILEKNLPSL
LASLTLAFSKASSVCLHIEYAGTSLSKTYRQGLQDASGNLFPNIETPSILNHESYLCP
LCHGKGFLSTCSILPHKKRFAQHTPISLFTSLFPNQDPSPIYPLLNELGIPSIALFQE
IDILSFESLCLGTQQHLGLNALCTKAMLMESEEDFPPDLISKTPCNQCQGLGVYTYKH
CTRIHSISLSEIYQSNVAFLKKLLLSVEEEPSLVQDILSRLDLLDRVGLGYVILGQEQ
QSLSDGEHYRLLLAKAFSSGLTDVIYLLEDPLAGIHPEDAPCLLAVIKKLVTNHNTVI
VTDREGSLAEHADYLLHLGPEPGPNGGYLLSTSALKQSQPVLCNTRSSEETPQLSVSV
STSTIQIENLAFPLQRLSTISGVSGSGKTTLLNSIYEHGCAILEKDPSVFSEIIFLDS
YPQIASSRSDISTYFDIAPSLRNFYASLTQAKALNISVSMFSPNTKQGQCSDCWGLGY
QWIDRAFYAMEKRPCPTCGGFRVQPLIQEVVYEGKHFGQLLQASLNEVAETFSFLKKI
QKPLHTLITNDLGYLSLGQNMASLSLSEKIAIKLTKHLFLPPKHPTLFLLDEIATSLD
NQQQSALLVQLNTLVSLGHTVVIIENHPAFSQQADFWIQMGRKTDNHILFAGPNPNLS
FT"
misc_feature 375696..381053
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="excinuclease ABC subunit A; Provisional; Region:
PRK00635"
/db_xref="CDD:167016"
misc_feature 375708..>376109
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature <377040..377381
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature 377487..378386
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_II; cd03271"
/db_xref="CDD:73030"
misc_feature 378504..>378845
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 378585..378608
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(378594..378599,378603..378611,378756..378758)
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 378747..378758
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <379764..380096
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 379836..379865
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 379902..379919
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 379926..379937
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 380001..380021
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 380175..>380351
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 380241..380264
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(380250..380255,380259..380267,380349..380351)
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 380340..380351
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <380601..381029
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature order(380700..380702,380703..380708)
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 380769..380798
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 380838..380855
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 380862..380873
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 380937..380957
/gene="uvrA"
/locus_tag="CTDLC_0333"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 381274..382674
/gene="dnaX_2"
/locus_tag="CTDLC_0334"
/db_xref="GeneID:12387821"
CDS 381274..382674
/gene="dnaX_2"
/locus_tag="CTDLC_0334"
/EC_number="2.7.7.7"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit gamma/tau"
/protein_id="YP_005812265.1"
/db_xref="GI:385244421"
/db_xref="GeneID:12387821"
/translation="MTSYQVSSRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIF
SGIRGTGKTTLARVFAKALNCQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRG
IEDIRQINETVLFVPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTE
IAKIPNTISSRCQKMLLKRISEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRD
AESLYDYVVGLFPESLDPDSTAKALGILSEDSLYQLAEAITTQNYEQALTPVSDAMQM
GVAPAHFLQDVTLLFRSFLLKQYSKQFHSVATKYSSEILLEILDFLGESARHINLALF
EKTFLETVIIRLLRIYSRPTFSQLVSQIRQPAPTQIRPIPTASELESCPPQIKSSNTE
ETKSSPQPTAVAKLSQGSLLTTASSQTKKETIHQETLPPSLDKISPSESAAIDTLLQF
AVVEFSGVLTKEPKHG"
misc_feature 381274..382662
/gene="dnaX_2"
/locus_tag="CTDLC_0334"
/note="DNA polymerase III subunits gamma and tau;
Validated; Region: PRK06305"
/db_xref="CDD:180523"
misc_feature 381334..381801
/gene="dnaX_2"
/locus_tag="CTDLC_0334"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 381409..381432
/gene="dnaX_2"
/locus_tag="CTDLC_0334"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(381412..381435,381655..381657,381748..381750)
/gene="dnaX_2"
/locus_tag="CTDLC_0334"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 381643..381660
/gene="dnaX_2"
/locus_tag="CTDLC_0334"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 381784..381786
/gene="dnaX_2"
/locus_tag="CTDLC_0334"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 382667..382957
/locus_tag="CTDLC_0335"
/db_xref="GeneID:12387822"
CDS 382667..382957
/locus_tag="CTDLC_0335"
/codon_start=1
/transl_table=11
/product="transcriptional regulatory protein"
/protein_id="YP_005812266.1"
/db_xref="GI:385244422"
/db_xref="GeneID:12387822"
/translation="MGSGYAKKKKEAKLMERQFMEMEASLEQKRFSGEAGNGLVSVTI
NGKCDLVDVRIKPDCLDPEDPEVVADLFRAAFKAAKAALDSEMSAMQMGMPF"
misc_feature 382667..>382870
/locus_tag="CTDLC_0335"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:234669"
gene complement(382967..384682)
/gene="ptsI"
/locus_tag="CTDLC_0336"
/db_xref="GeneID:12387823"
CDS complement(382967..384682)
/gene="ptsI"
/locus_tag="CTDLC_0336"
/EC_number="2.7.3.9"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate-protein phosphotransferase"
/protein_id="YP_005812267.1"
/db_xref="GI:385244423"
/db_xref="GeneID:12387823"
/translation="MSVTGQDNKELQQEFVIVGEPIVPGIGLGKALLLGKSSLRIREL
TLPQEEVEHEISRYYKALKRSRSDLAALEKEAKGKQGYQEIASILQAHLEIIKDPLLT
EEVVKTIRKDRKNAEFVFSSVMGEIEKSLCAVQKTTATRVDRVQDIHDISNRVIGHLC
CQHKSSLGEFDQNLIVFSEELTPSEAANANPEYIRGFVSLEGAKTSHTAIVSLAKNIP
YVANFTTELWDTIKEFSGTLVLINGDKGEITFNPQLSTIQTYYRKQASVSVTVPVQVQ
TGKNLPLISLSAQIVSTEELPMIERESPGTSVGLFRSEFMAFSLGRLPCVEEQADQYA
QLVQFQCSDIHVLRLFDFGEDKECPCISSSHRSVRWLLEQEKVLKEQLQAIAIVSRIG
RLKVLIPGVIDASEIALVKRLFQEEIRLLKGISENILWGSMIEIPSAVWMIEEILQES
SFVALGTNDLAQYTLGTSRERSLLGERSRVPHPSVIRMIHHVVEQAKQKNVPVSVCGE
MAGDPALLPMFLGLGVKELSAVIPAINSLKMRLLDLNSRECSRLTKQLLRAKTYEEVH
QLLYV"
misc_feature complement(382976..384634)
/gene="ptsI"
/locus_tag="CTDLC_0336"
/note="phosphoenolpyruvate-protein phosphotransferase;
Region: PTS_I_fam; TIGR01417"
/db_xref="CDD:213617"
misc_feature complement(384284..>384538)
/gene="ptsI"
/locus_tag="CTDLC_0336"
/note="PEP-utilising enzyme, N-terminal; Region:
PEP-utilisers_N; pfam05524"
/db_xref="CDD:218623"
misc_feature complement(383948..384175)
/gene="ptsI"
/locus_tag="CTDLC_0336"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature complement(383048..383782)
/gene="ptsI"
/locus_tag="CTDLC_0336"
/note="PEP-utilising enzyme, TIM barrel domain; Region:
PEP-utilizers_C; pfam02896"
/db_xref="CDD:217274"
gene complement(384682..385062)
/gene="ptsH"
/locus_tag="CTDLC_0337"
/db_xref="GeneID:12387824"
CDS complement(384682..385062)
/gene="ptsH"
/locus_tag="CTDLC_0337"
/codon_start=1
/transl_table=11
/product="phosphocarrier protein HPr"
/protein_id="YP_005812268.1"
/db_xref="GI:385244424"
/db_xref="GeneID:12387824"
/translation="MDLAYHHFVFTRTGKNTMSGGNDSVLHRPVEAPLMEDGELSAVF
TIRNSSGIHVRPAGTIVKLFEGEECEATLTYLGKTVNARSVMSILMLGASYNGEVAVH
IKGPSASRVMQKLSEVFNSGFGEL"
misc_feature complement(384706..384933)
/gene="ptsH"
/locus_tag="CTDLC_0337"
/note="Histidine-containing phosphocarrier protein
(HPr)-like proteins. HPr is a central component of the
bacterial phosphoenolpyruvate sugar phosphotransferase
system (PTS). The PTS catalyses the phosphorylation of
sugar substrates during their translocation...; Region:
PTS-HPr_like; cd00367"
/db_xref="CDD:29444"
misc_feature complement(384925..384933)
/gene="ptsH"
/locus_tag="CTDLC_0337"
/note="dimerization domain swap beta strand [polypeptide
binding]; other site"
/db_xref="CDD:29444"
misc_feature complement(order(384793..384798,384805..384816,
384868..384870,384877..384879,384889..384894,
384898..384903,384907..384909))
/gene="ptsH"
/locus_tag="CTDLC_0337"
/note="regulatory protein interface [polypeptide binding];
other site"
/db_xref="CDD:29444"
misc_feature complement(384904..384906)
/gene="ptsH"
/locus_tag="CTDLC_0337"
/note="active site"
/db_xref="CDD:29444"
misc_feature complement(384811..384813)
/gene="ptsH"
/locus_tag="CTDLC_0337"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:29444"
gene complement(385148..385687)
/locus_tag="CTDLC_0338"
/db_xref="GeneID:12387825"
CDS complement(385148..385687)
/locus_tag="CTDLC_0338"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812269.1"
/db_xref="GI:385244425"
/db_xref="GeneID:12387825"
/translation="MSFFSSLSHLDVRITRNSLSAPYDVQMVYSYKGIVYLGAPPFET
VGVVFPKLGDETYHHFFSIHNGFSREGEIGIFPYRYLAQAQYLLREDLLSRGKISLED
NCSSLGIFPFYAQYDIADSRCFIIDAKIRQYFPSYNMRLDNQSLFPHGKIAISEMLSD
SHYHTFLLWLEQYLLSQKP"
gene 385893..387422
/locus_tag="CTDLC_0339"
/db_xref="GeneID:12387826"
CDS 385893..387422
/locus_tag="CTDLC_0339"
/codon_start=1
/transl_table=11
/product="COME operon protein 3"
/protein_id="YP_005812270.1"
/db_xref="GI:385244426"
/db_xref="GeneID:12387826"
/translation="MLRYLYTTAFLTSLHRLSALRIRLFSSCSVFQKQHPIFIGSAYW
LAGMLAHQAPICCALLIVALHPFIPKRCLKTLFSLSICFGVPLLFSPLISPSNTSRSV
ANSKIQVAKGSASGYFLIKKKLTHRYSGTALSLETEDKQSYQNLPCSIISTIPLSEHT
VYHLEGCVSKSSCPITFRSSKLINTPTQSSIFLRNSSNYSLPILKENFRFFLHQRILN
LFSDKDIGRFSSSLILGTPLSYKHKELFKSKGLSHLFSVSGWHFSLFANTFFFLLGTL
SPKKRGLWVLFLLSLLNFVFPTSPSVFRTWFSSILFCLAPFSIGHCSSLNRLGISFIF
CSLFFPISSPALILSFLATLGILFFFVPLLRFFYSPWESLFGTRWFLFPLRFVFTTLS
ISLAAQLFIVFPMIRMFKILPLDGLIYNLFYPTLVMPIFLMIPLSFLNPLLSHLSESY
ISWILDLPWLHAPNVLISLTSAPPTLEWITLVSIILVYIGALSSVGKAVNTAVDHSII
L"
misc_feature 385902..387209
/locus_tag="CTDLC_0339"
/note="Predicted membrane metal-binding protein [General
function prediction only]; Region: ComEC; COG0658"
/db_xref="CDD:31003"
misc_feature 386604..387368
/locus_tag="CTDLC_0339"
/note="Competence protein; Region: Competence; pfam03772"
/db_xref="CDD:190745"
gene complement(387495..389531)
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/db_xref="GeneID:12387827"
CDS complement(387495..389531)
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/EC_number="1.2.4.4"
/note="2-oxoisovalerate dehydrogenase subunit alpha"
/codon_start=1
/transl_table=11
/product="2-oxoisovalerate dehydrogenase beta subunit"
/protein_id="YP_005812271.1"
/db_xref="GI:385244427"
/db_xref="GeneID:12387827"
/translation="MRHSVYQLDSAVENVFRLAWTLRFSERKMLLLSRQSGSGGSFQL
SCAGHELAGVVAAKSLIPGKDWAFPYYRDQGFPLGLGCDLSEIFASFLARTTQNHSAG
RMMPYHYSHKKLRICCQSSVVGTQFLQAAGRAWGVKNSGKSEVVYVSGGDGSTSQGEF
HEMLNFASLHQLPLVIAIQNNQWAISVPFADQCGADLVALGNSYSGLATYEVDGGDVS
ALTQTFERAVSDARHRHIPALVIVNVVRLESHSNSDNQAKYRSEEDLSCCQAQDPLVR
LEKSLLDDFGVAHEVIEQIKAELQETVNQACELAESAPFPCKGATKHEVFAPYNISLI
DYENALETASLQKLEPRVMRDAITEALVEEMQRDPGVVVFGEDVAGNKGGVFGVTRTL
TEQFGENRCFNTPLAEATIIGAAVGMAFDGFYKPVAEIQFADYIWPGINQLFSEAASI
YYRSAGEWEMPIVIRTPCGGYIQGGPYHSQNIEAFLAHCPGLKVVYPSNAADAKALLK
AAIRDPNPVVFLEHKALYQRRLFSTTPVFSSDYVLPFGQARIVHPGTDLTIVSWGMSL
VMSVEVARDLLELGISVEVIDLRTIVPCDFATVCESVKKTGKLLVVHEASEFCGFGSE
LVALVAERAYRYLDAPIKRIGALHAPVPYSKVLENEVLPQKEKIFQEAKLLAEF"
misc_feature complement(388509..389531)
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion]; Region: AcoA;
COG1071"
/db_xref="CDD:223997"
misc_feature complement(388602..389486)
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="Thiamine pyrophosphate (TPP) family, E1 of
PDC_ADC_BCADC subfamily, TPP-binding module; composed of
proteins similar to the E1 components of the human
pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain...;
Region: TPP_E1_PDC_ADC_BCADC; cd02000"
/db_xref="CDD:238958"
misc_feature complement(order(388758..388760,388770..388772,
388914..388916,388932..388934,388971..388982,
389025..389027,389037..389039,389049..389051,
389058..389069,389073..389075,389166..389171,
389253..389255,389415..389417))
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:238958"
misc_feature complement(order(388782..388784,388983..388985,
388989..388991,389070..389081,389163..389165,
389169..389171,389316..389321))
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:238958"
misc_feature complement(order(389025..389027,389034..389039,
389055..389060,389115..389117,389124..389129,
389133..389138,389145..389150,389157..389159,
389172..389174,389178..389180,389184..389186))
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238958"
misc_feature complement(order(388713..388721,388743..388775,
388779..388799))
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="phosphorylation loop region [posttranslational
modification]"
/db_xref="CDD:238958"
misc_feature complement(387498..388475)
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, beta
subunit [Energy production and conversion]; Region: AcoB;
COG0022"
/db_xref="CDD:223101"
misc_feature complement(387963..388469)
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="Pyrimidine (PYR) binding domain of the beta
subunits of the E1 components of human pyruvate
dehydrogenase complex (E1- PDHc) and related proteins;
Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
/db_xref="CDD:132919"
misc_feature complement(order(387987..387992,388053..388058,
388101..388103,388110..388112,388176..388181,
388206..388211,388218..388220,388278..388286,
388290..388295,388302..388319,388323..388325,
388332..388334,388401..388403,388419..388421,
388425..388427))
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="alpha subunit interface [polypeptide binding];
other site"
/db_xref="CDD:132919"
misc_feature complement(order(388218..388220,388227..388229,
388308..388310,388314..388316,388404..388406))
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132919"
misc_feature complement(order(388062..388064,388068..388073,
388077..388079,388101..388106,388110..388112,
388176..388178,388185..388187,388197..388199,
388212..388214,388218..388223,388308..388319,
388323..388325,388401..388403))
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:132919"
misc_feature complement(387528..387896)
/gene="pdhA/B"
/locus_tag="CTDLC_0340"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:217227"
gene complement(389566..390744)
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/db_xref="GeneID:12387828"
CDS complement(389566..390744)
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/note="DnaJ protein"
/codon_start=1
/transl_table=11
/product="Chaperone protein"
/protein_id="YP_005812272.1"
/db_xref="GI:385244428"
/db_xref="GeneID:12387828"
/translation="MDYYTILGVAKTATPEEIKKAYRKLAVKYHPDKNPGDAEAERRF
KEVSEAYEVLGDAQKRESYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGDFG
GNGGGFFEGLFGGLGEAFGMRGGSESSRQGASKKVHITLSFEEAAKGVEKELLVSGYK
SCDACSGSGANTAKGVKVCDRCKGSGQVVQSRGFFSMASTCPDCSGEGRVITDPCSVC
RGQGRIKDKRSVHVNIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFER
HGDDLVLELPIGFVDAALGIKKEIPTLLKEGTCRLSIPEGIQSGTVLKVRGQGFPNVH
GKSRGDLLVRVSVETPQHLSNEQKDLLRQFAATEKAENFPKKRSFLDKIKGFFSDFAV
"
misc_feature complement(389569..390744)
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/note="chaperone protein DnaJ; Provisional; Region:
PRK14284"
/db_xref="CDD:237658"
misc_feature complement(390577..390741)
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(390598..390603,390610..390615,
390622..390624,390649..390657))
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature complement(390079..390261)
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature complement(order(390091..390093,390100..390102,
390133..390135,390142..390144,390199..390201,
390208..390210,390250..390252,390259..390261))
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature complement(389686..390078)
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature complement(order(389686..389700,389788..389799,
389863..389868,389875..389880))
/gene="dnaJ"
/locus_tag="CTDLC_0341"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene complement(390773..391009)
/gene="rpsU"
/locus_tag="CTDLC_0342"
/db_xref="GeneID:12387829"
CDS complement(390773..391009)
/gene="rpsU"
/locus_tag="CTDLC_0342"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S21"
/protein_id="YP_005812273.1"
/db_xref="GI:385244429"
/db_xref="GeneID:12387829"
/translation="MCVRARRALLNKTNYVLRLFMPSVKVRVGEPIDRALRILKKKID
KEGILKTSKSHRFYDKPSVKKRAKSKAAAKYRGR"
misc_feature complement(<390821..390949)
/gene="rpsU"
/locus_tag="CTDLC_0342"
/note="30S ribosomal protein S21; Reviewed; Region: rpsU;
PRK00270"
/db_xref="CDD:178952"
gene complement(391146..391778)
/locus_tag="CTDLC_0343"
/db_xref="GeneID:12387830"
CDS complement(391146..391778)
/locus_tag="CTDLC_0343"
/EC_number="3.4.24.57"
/codon_start=1
/transl_table=11
/product="O-sialoglycoprotein endopeptidase"
/protein_id="YP_005812274.1"
/db_xref="GI:385244430"
/db_xref="GeneID:12387830"
/translation="MYKYFIVDTSGSQPFLAYVDCRDVLEVWSLPTGPDQGVVLNFIF
NSLDLPFQGIGVSVGPGGFSATRVGVAFAQGLSLAKNVPLVGYSSLEGYLSLGQEEEA
LLLPLGKKGGIVALNSELSLDGFLLTDTTSTPGILLSYSEALEYCLDKGCCHVISPDP
TYFVELFSSRISVRKVVPCIDRIRKYVVSQFVLSQNLPLCLDYRSISSFF"
misc_feature complement(391161..391775)
/locus_tag="CTDLC_0343"
/note="Inactive homolog of metal-dependent proteases,
putative molecular chaperone [Posttranslational
modification, protein turnover, chaperones]; Region:
COG1214"
/db_xref="CDD:224135"
misc_feature complement(<391455..391667)
/locus_tag="CTDLC_0343"
/note="Glycoprotease family; Region: Peptidase_M22;
pfam00814"
/db_xref="CDD:216132"
gene 392088..394547
/gene="lon"
/locus_tag="CTDLC_0344"
/db_xref="GeneID:12387831"
CDS 392088..394547
/gene="lon"
/locus_tag="CTDLC_0344"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812275.1"
/db_xref="GI:385244431"
/db_xref="GeneID:12387831"
/translation="MNSTNNTDSQNLDPNASEVEKLLDESAEAEEKVDDHTPPSELFI
LPLNKRPFFPGMAAPLLIEAGPHYEVLTLLAKSSQKHIGLVLTKKEDANTLKVGFNQL
HRVGVSARILRIMPIEGGSAQVLLSIEDRIRIVKPIQDKYLKAKVSYHKENKELTEEL
KAYSISIVSIIKDLLKLNPLFKEELQIFLGHSDFTEPGKLADFSVALTTATREELQEI
LETTDMHDRIDKALVLLKKELDLSRLQSSINQKIEATITKSQKEFFLKEQLKTIKKEL
GLEKDDHAVDLEKFMERFNKRDVPQYAMDVIQDEMDKLQTLETSSAEYAVCRNYLDWL
TIVPWGIQTKEYHDLKKAESILNKDHYGLEDIKQRILELISVGKLANGMKGSIICLVG
PPGVGKTSIGRSIAKVLHRKFFRFSVGGMRDEAEIKGHRRTYIGAMPGKLVQALKQSQ
IMNPVIMIDEVDKIGSSYHGDPASALLEVLDPEQNKDFLDHYLDVRVDLSNVLFILTA
NVLDSIPDPLLDRMEVLRLSGYILEEKLQIATKYLVPRARKEMGLSAQNVTFQPEALK
HMINNYAREAGVRTLNENIKKVLRKVALKIVQNQEKNLSKKSRFTITPKNLQDYLGKP
VFSSDRFYEKTPVGVATGLAWTSLGGATLYIESVQVPSSSGKADMHLTGQAGDVMKES
SQIAWTYLHSALERYAPGQPFFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLDV
PVLNNLGMTGELTLTGRVLGIGGIREKLIAARRSKLNILIFPEDNRRDYDELPAYLKK
GLKVHFVTHYDDVFKIAFPGV"
misc_feature 392196..394541
/gene="lon"
/locus_tag="CTDLC_0344"
/note="ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones]; Region: Lon; COG0466"
/db_xref="CDD:223542"
misc_feature 393168..393656
/gene="lon"
/locus_tag="CTDLC_0344"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 393261..393284
/gene="lon"
/locus_tag="CTDLC_0344"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(393264..393287,393462..393464,393612..393614)
/gene="lon"
/locus_tag="CTDLC_0344"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 393450..393467
/gene="lon"
/locus_tag="CTDLC_0344"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 393648..393650
/gene="lon"
/locus_tag="CTDLC_0344"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 393918..394541
/gene="lon"
/locus_tag="CTDLC_0344"
/note="Lon protease (S16) C-terminal proteolytic domain;
Region: Lon_C; pfam05362"
/db_xref="CDD:191262"
gene 394649..395014
/locus_tag="CTDLC_0345"
/db_xref="GeneID:12387832"
CDS 394649..395014
/locus_tag="CTDLC_0345"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812276.1"
/db_xref="GI:385244432"
/db_xref="GeneID:12387832"
/translation="MQLPSIIQSFFFPKAPPSPLKKPIYQQTERIINIAYLVLLSLSV
VGIISGVFLSLSFPLLGAGICLISLAVGSCLLVLFPLLPDIEKIIARREPKVSITTSS
PLPTLMRYFKSIGLGKAAH"
gene 395364..396278
/gene="elaC"
/locus_tag="CTDLC_0346"
/db_xref="GeneID:12387833"
CDS 395364..396278
/gene="elaC"
/locus_tag="CTDLC_0346"
/EC_number="3.1.26.11"
/codon_start=1
/transl_table=11
/product="Ribonuclease Z"
/protein_id="YP_005812277.1"
/db_xref="GI:385244433"
/db_xref="GeneID:12387833"
/translation="MSYRGLTILGCSSQQPTRHRNHGAYLLRWNGEGLLFDPGEGTQR
QFIYANIAPTVVSRIFISHFHGDHCLGLGSMLMRLNLDRVLHPIHCYYPASGKKYFDR
LRYSTIYHETIKVIEHPIDREGIVEDFGNFRIESRQLDHLVDTLGWRITEPDTTKFIP
EKIKAAGLKGPIMQELINKGQVKVNDTIVHLDDVSYTRKGDSIAVVADSLPCQAIVDL
ARNARILLCESTYLEEHSHLAKSHYHMTAKQAAEQAKRAEVQQLILTHFSARYNTTEE
FVQEAGEIFPNVFAAEEFCSYEFPKNPS"
misc_feature 395379..396260
/gene="elaC"
/locus_tag="CTDLC_0346"
/note="ribonuclease Z; Region: RNase_Z; TIGR02651"
/db_xref="CDD:233963"
gene 396334..397287
/gene="xerC"
/locus_tag="CTDLC_0347"
/db_xref="GeneID:12387834"
CDS 396334..397287
/gene="xerC"
/locus_tag="CTDLC_0347"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812278.1"
/db_xref="GI:385244434"
/db_xref="GeneID:12387834"
/translation="MGMITSFYAFLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSD
LSPTPPLSLHDNTYDYPPLSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFAR
FCVKNQLIPENPAEMIRGPRLPQELPSPLTYEQVLALMAAPELDKVTGFRDRCLLELF
YSSGLRISEITALNRADIDFQSHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRAS
VEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMD
LKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHPHNLEE"
misc_feature 396334..397272
/gene="xerC"
/locus_tag="CTDLC_0347"
/note="site-specific tyrosine recombinase XerC; Reviewed;
Region: xerC; PRK00236"
/db_xref="CDD:178942"
misc_feature 396352..397254
/gene="xerC"
/locus_tag="CTDLC_0347"
/note="XerD and XerC integrases, DNA breaking-rejoining
enzymes, N- and C-terminal domains. XerD-like integrases
are involved in the site-specific integration and excision
of lysogenic bacteriophage genomes, transposition of
conjugative transposons, termination...; Region:
INT_XerDC; cd00798"
/db_xref="CDD:29499"
misc_feature order(396829..396831,396901..396903,397111..397113,
397120..397122,397189..397191,397216..397218)
/gene="xerC"
/locus_tag="CTDLC_0347"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29499"
misc_feature order(396829..396831,397111..397113,397120..397125,
397216..397218)
/gene="xerC"
/locus_tag="CTDLC_0347"
/note="active site"
/db_xref="CDD:29499"
gene 397305..398927
/gene="yjjK"
/locus_tag="CTDLC_0348"
/db_xref="GeneID:12387835"
CDS 397305..398927
/gene="yjjK"
/locus_tag="CTDLC_0348"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_005812279.1"
/db_xref="GI:385244435"
/db_xref="GeneID:12387835"
/translation="MYSKKVFVILLSMSIVLDKIGKTLGTRVLFDDVSVVFNPGNRYG
LTGPNGAGKSTLLKIITGLVEPSRGTISLPKKIGILRQNIDSFGDVIVLDCVIMGNSR
LWEAMQRRDALYAEEFTDAIGMELGEIEEIIGEEDGYRAESEAEELLLGIGIPEEFFS
QKMATIPLDLQFRVLLCQALFGHPEALLLDEPTNHLDLHSINWLGSFLKDYNGTVIVV
SHDRHFLNTITTHIADIDYDTIIIYPGNYDAMVEMKTASREQEKADIKSKEKKIAQLR
EFVAKFGAGSRASQVQSRLREIKKLQPQELKKSNIQRPYIRFPVSDKASGKVVFSIEG
ISKTYDADPLFKPFSLEIYQGDKIGVIGNNGLGKTTLMKLLAGVEQPSQGQVKLGHNV
AFSYFPQNHADILKDCGEETLFEWLRRRKTGITDQEVRSVLGKMLFGGDDAFKQVKAL
SGGETARLLMAGMMLENHNMLILDEANNHLDLESVSALAWAINDYPGTAIFVSHDRTL
IDECATKLLIFNKGTISFFGGPMSEYLASQKK"
misc_feature 397338..398921
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="ATPase components of ABC transporters with
duplicated ATPase domains [General function prediction
only]; Region: Uup; COG0488"
/db_xref="CDD:30834"
misc_feature 397347..397967
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 397443..397466
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(397452..397457,397461..397469,397599..397601,
397872..397877,397962..397964)
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature order(397593..397598,397599..397601)
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature order(397779..397799,397821..397829)
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 397860..397877
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 397884..397895
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 397950..397967
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 398031..398258
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:205105"
misc_feature 398295..398873
/gene="yjjK"
/locus_tag="CTDLC_0348"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
gene 398963..399553
/gene="maf"
/locus_tag="CTDLC_0349"
/db_xref="GeneID:12387836"
CDS 398963..399553
/gene="maf"
/locus_tag="CTDLC_0349"
/codon_start=1
/transl_table=11
/product="Septum formation protein Maf"
/protein_id="YP_005812280.1"
/db_xref="GI:385244436"
/db_xref="GeneID:12387836"
/translation="MEARLVLGSSSERRKAVLESFRIPFICVSPDFDERSIVYSGDPF
EYTKELAWNKANVVRSQGFSDALIITADTVVVYKGEVFNKPESEEHAVEMLRTLSGSS
HSVITTLVLMQNEKVLSASENTQVSFIDIPPQHLKTYVRSFSSLKRCGGYCVQDGGGL
IIKQIEGCVYNIQGLPIKTLNQLLMEFNISLWDYLV"
misc_feature 398972..399547
/gene="maf"
/locus_tag="CTDLC_0349"
/note="Maf-like protein; Region: Maf; pfam02545"
/db_xref="CDD:202278"
misc_feature 398975..399514
/gene="maf"
/locus_tag="CTDLC_0349"
/note="Nucleotide binding protein Maf. Maf has been
implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea, but homologs in
B.subtilis and S.cerevisiae are nonessential for cell
division. Maf has been predicted to be a nucleotide-
or...; Region: Maf; cd00555"
/db_xref="CDD:238310"
misc_feature order(398987..398989,399002..399004,399062..399064,
399122..399124,399176..399178,399212..399214)
/gene="maf"
/locus_tag="CTDLC_0349"
/note="active site"
/db_xref="CDD:238310"
misc_feature order(399104..399106,399308..399325)
/gene="maf"
/locus_tag="CTDLC_0349"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238310"
gene 399535..401235
/locus_tag="CTDLC_0350"
/db_xref="GeneID:12387837"
CDS 399535..401235
/locus_tag="CTDLC_0350"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812281.1"
/db_xref="GI:385244437"
/db_xref="GeneID:12387837"
/translation="MGLSRLAFISFLSFTLSASCDFPSSVSQRILFSCRKSVPQALEA
YLEASATYQQHDFSVLRVIAESYLQQSFLSEDTYIRKSAIIGAGLSGSSEALELLSEA
IETQDLYEQLLILNAATSQLSKTSDKLLFKGLTASHPVIRLEAAYRLACMKNSKVSDY
LYSFIYKLPEEIQNLAATIFLQLETEEADAYIHHLLSSPNNLTRNYVAYLIGEYKQKR
FLPTLRSLLTSASPLDQEGALYALGKLEDSGSYPRIKALSSRSNPEVVLAAAQTLLFL
EKEEEALPILTNLCQQKLLRALYTARFLSQEKGEELLLPIFYNATQEEIRLNTALALV
HQGCTDPQVLHYLTEILESKVLHRIFLPTHSTGKAIQFWKECTTFPLMSQEDKMRTLA
MYRVAEDTILSALLKLPNDAYLPYLERILASQKTILAAKAIAFLSVTAHPQALSLVSK
AALTPGDPIIRAYANLALYTMTKDPEKKAVLYRYAEQLIEDTILFTDAENPLPSPSSS
YLRYQVSPETRTQLMLAILETLVSSKTDEDIRVFLSLMKKTHYKNIPILSGLLMRIVE
"
misc_feature 399970..400965
/locus_tag="CTDLC_0350"
/note="FOG: HEAT repeat [Energy production and
conversion]; Region: COG1413"
/db_xref="CDD:224331"
gene 401242..403335
/locus_tag="CTDLC_0351"
/db_xref="GeneID:12387838"
CDS 401242..403335
/locus_tag="CTDLC_0351"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812282.1"
/db_xref="GI:385244438"
/db_xref="GeneID:12387838"
/translation="MKRFFPLFIGVLLAHTLPSEGLSHQQAVQKKISYLSHFKGITGI
MDVEDGVLHIHDDLRLQANKAYVENRTDCGIKIVAHGNVMVNYRGKILICDYLEYYED
TDSCLLTNGRCSLYPWFIGGSTITISPSSIIIHKGYISTSEGPQKHICLSGDYLKYSS
DSVLSMGPSRLSICNTPVLLLPQISIMPMEIPKPPITFRGGSGGFLGSYLGVSYSPIS
KKHCSTTLFLDGFFKHGIGLGYNMRFSSQENPSNAINIKSYYAHRLAIDSSGAKDRYR
LHGDFTFSKERAHLAGEFHLSDSWETVVDIFPNNFSLKNTGPTEVSLSWRDNNLFGKM
TSSVKVNSFQNVKQELPQAILHHRPVRIRRSRIFLENRLEAGFLDFHFSSNIPGSNFS
SWRFSSAHKVYRGLVLPIGTLTPSLSGTAIYYTRMLSPNAAHCQLSGSLSFDYRVALQ
KEYRHARHIVEPFCSFLKTTRPVLSSDEPHIFSIKDAFHSINLLHVGLESKVLNKHST
PSHLKLWTTYIFDEPHAKDTFPKTACWFSLPLTLQNTLSLDAEWIWKKSRWDHLNVIW
EWILNDNLGLTLEFLHRSKYGFIKCAKDNYTLDVSRSLDTLLASPLSDRRNLITGKLF
VRPHPHWNYNLNLRYGWHRPDSPSYLEYQMILGHKIFEHWQLFSVYEKREADKRCFFY
LKLDKRKQKHRHPFG"
gene complement(403409..403717)
/gene="secG"
/locus_tag="CTDLC_035101"
/db_xref="GeneID:12387839"
CDS complement(403409..403717)
/gene="secG"
/locus_tag="CTDLC_035101"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812283.1"
/db_xref="GI:385244439"
/db_xref="GeneID:12387839"
/translation="MVALFYIFLFLFLLLCLILCGLVLVQESKSTGLGSSFGVDSGDS
VFGVSTPEILKKVTAWLAGAFCLGCLILSFATSYLGKGENREPLPQQYVEDLIQDVEE
"
misc_feature complement(403466..>403642)
/gene="secG"
/locus_tag="CTDLC_035101"
/note="Preprotein translocase subunit SecG [Intracellular
trafficking and secretion]; Region: SecG; COG1314"
/db_xref="CDD:224233"
gene complement(403873..404448)
/gene="def"
/locus_tag="CTDLC_0353"
/db_xref="GeneID:12387840"
CDS complement(403873..404448)
/gene="def"
/locus_tag="CTDLC_0353"
/EC_number="3.5.1.88"
/codon_start=1
/transl_table=11
/product="Peptide deformylase"
/protein_id="YP_005812284.1"
/db_xref="GI:385244440"
/db_xref="GeneID:12387840"
/translation="MRLCIGICGIMIRDLEYYDSPILRKVAAPVTEITDELRQLVLDM
SETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQL
VYGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVL
YIDRMSDKDKTKQFKNNLEKIRRKYSILRGL"
misc_feature complement(403966..404400)
/gene="def"
/locus_tag="CTDLC_0353"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:29602"
misc_feature complement(order(403984..403986,403993..403998,
404119..404127,404269..404271,404284..404292))
/gene="def"
/locus_tag="CTDLC_0353"
/note="active site"
/db_xref="CDD:29602"
misc_feature complement(order(403993..403995,404119..404121,
404269..404271,404284..404286))
/gene="def"
/locus_tag="CTDLC_0353"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
misc_feature complement(order(403984..403986,403996..403998,
404122..404124))
/gene="def"
/locus_tag="CTDLC_0353"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
gene complement(404693..405526)
/gene="ksgA"
/locus_tag="CTDLC_0354"
/db_xref="GeneID:12387841"
CDS complement(404693..405526)
/gene="ksgA"
/locus_tag="CTDLC_0354"
/EC_number="2.1.1.-"
/codon_start=1
/transl_table=11
/product="Dimethyladenosine transferase"
/protein_id="YP_005812285.1"
/db_xref="GI:385244441"
/db_xref="GeneID:12387841"
/translation="MARSSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEV
QPGDWVLEIGPGFGALSEVLLSQGANVIALEKDPMFEESLSQLPMDIEITDACKYPLT
SLEDKGWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPGD
KDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFT
LTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD
I"
misc_feature complement(404696..405514)
/gene="ksgA"
/locus_tag="CTDLC_0354"
/note="16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed; Region: ksgA; PRK00274"
/db_xref="CDD:234708"
misc_feature complement(404705..405472)
/gene="ksgA"
/locus_tag="CTDLC_0354"
/note="dimethyladenosine transferase; Region: ksgA;
TIGR00755"
/db_xref="CDD:233115"
gene complement(405542..406603)
/locus_tag="CTDLC_0355"
/db_xref="GeneID:12387842"
CDS complement(405542..406603)
/locus_tag="CTDLC_0355"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812286.1"
/db_xref="GI:385244442"
/db_xref="GeneID:12387842"
/translation="MRVVERAVIACYLGITIFSGIAFGYEGAFSSGSFEQNPSGVAIH
NRVLFKVDEDTVVTTLDVIRKLNILFYSTCPQLVDSVSARSQYYSAMWPVVLETVINE
FLMAADAKAKKIFIDPTSVNQEIEAMFGRDLSPFAKFFDMTPEDVFNVVHRILVAQRV
EGMMVRSRVMLKVTPGMVREYYQKLADEAAQITQWTYRVLTIKAGLEFLAHKIAGKVQ
ERLNEGSSWDKERLTALVLSQGGQLMCSEEFFREDAQLSVAHRQSLEEINFPEERCGK
VLEHASGLKLFVLFNRATKTLDPLDKMEAQLKQQLMMEFAAEEEANYKNKLHARYGFD
PATITKLLAEDAPQLFSLL"
gene complement(406908..409070)
/gene="yyaL"
/locus_tag="CTDLC_0356"
/db_xref="GeneID:12387843"
CDS complement(406908..409070)
/gene="yyaL"
/locus_tag="CTDLC_0356"
/EC_number="2.7.4.9"
/codon_start=1
/transl_table=11
/product="thymidylate kinase"
/protein_id="YP_005812287.1"
/db_xref="GI:385244443"
/db_xref="GeneID:12387843"
/translation="MILKLKVYLLFFLFFIMTTDQPFTNKLITEKSPYLLLYAHTPVD
WYPWSAEAFQKASAEDKPIFLSIGCTHSKWCQVMLKENYENPEVAAILNEYFVCIKVD
KEELPHLANLYFELSQMLSVSGEVQDSPTWPLNVFLTPNLLPFFSLGYASFAGKMGAS
SFVQMLEKLHIMWEDREDREVFVQQAERVLEVAAFLEGCSCKKECLEEECLKRVTEAI
YRDVDAQFGGVKSFPKILPGLLSLFLLRVGAEYQDSRAIFFVNRSLQSVANGGIFDHL
AGGFFRYTIDDRWLIPCFEKRAFDNALMMLVYTEAGVYMRNPEFVIVAKRVLNYLIKE
LTDPKSGSFYLSEYGQQWAGTDIDSQYTWSGEEIRSLLGEQAEMFCEYYDVSREGICN
GRNILHVSPYMNRKEIEERYHCSLEEFQKKLEASREKLRVYREGKTQASKDDQSFTFQ
NGWGIFSLIKTGILLGEPECFVVAERCGEFIANNLYKNGRLLRRWRQGESKYSAGLED
YAAMIMGALALFEIGSGAKWLVLAEELAKEVLVSFRADTGGFYSTDGRDSSLLIKKAC
FVDGDAISSNALLCQGLLKLHIISGKRHYLTFAEDILQCVQGKWAKHKFSSLGSLLAA
QEYFSKQHRKIFISLGNEGDRAQVLDCFKGIFLPHTSLVWLTAKDREILSAYLPEGEK
RLIPSKEGLPTKIYLLDKDCGRVFTSLEHFYEFMSQLS"
misc_feature complement(406911..409019)
/gene="yyaL"
/locus_tag="CTDLC_0356"
/note="Highly conserved protein containing a thioredoxin
domain [Posttranslational modification, protein turnover,
chaperones]; Region: COG1331"
/db_xref="CDD:224250"
misc_feature complement(408546..408935)
/gene="yyaL"
/locus_tag="CTDLC_0356"
/note="TRX domain, SSP411 protein family; members of this
family are highly conserved proteins present in
eukaryotes, bacteria and archaea, about 600-800 amino
acids in length, which contain a TRX domain with a redox
active CXXC motif. The human/rat protein; Region: SSP411;
cd02955"
/db_xref="CDD:239253"
misc_feature complement(order(408846..408848,408855..408857))
/gene="yyaL"
/locus_tag="CTDLC_0356"
/note="catalytic residues [active]"
/db_xref="CDD:239253"
gene 409237..409323
/locus_tag="CTDLC_r004"
/db_xref="GeneID:12387844"
tRNA 409237..409323
/locus_tag="CTDLC_r004"
/product="tRNA-Ser"
/db_xref="GeneID:12387844"
gene complement(409340..409594)
/locus_tag="CTDLC_1357"
/db_xref="GeneID:12387845"
CDS complement(409340..409594)
/locus_tag="CTDLC_1357"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812288.1"
/db_xref="GI:385244444"
/db_xref="GeneID:12387845"
/translation="MEILIQEAPDRWFGIFESEVVEGETGAYSKTEGFCTTGICFYYQ
TKKFVNSLGREGLEEVSSSKPLHFTKKAYLPRLIKVKGYR"
gene 409837..410373
/locus_tag="CTDLC_0358"
/db_xref="GeneID:12387846"
CDS 409837..410373
/locus_tag="CTDLC_0358"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812289.1"
/db_xref="GI:385244445"
/db_xref="GeneID:12387846"
/translation="MATPITVPPSSASSQSSPDVSPHLSSASAKNAIYNTKQGRPWPV
IVSQIALLIMRISSIIVLGLGIAFLASNPMLGWSLLIAAITLAISSLLCAIAISVYQT
LTIRKLQSEVSSLERQSGVIFIEEGVEDALLSFESPFAGLEDDLVSPISPPLSPGDRS
YIDHLVMQAEARSLEEHC"
gene complement(410433..411023)
/locus_tag="CTDLC_0359"
/db_xref="GeneID:12387847"
CDS complement(410433..411023)
/locus_tag="CTDLC_0359"
/codon_start=1
/transl_table=11
/product="Bioy"
/protein_id="YP_005812290.1"
/db_xref="GI:385244446"
/db_xref="GeneID:12387847"
/translation="MVAKSITKEYSETLISNPFVKVIAGSLFLACLAKISISLPFTPV
PITFQTLGVFCLGLVMTPQMAVTTVVAYLLEGLFFPVFCSPMCGIAVFCGPTAGYLFS
FVPAVALISWLYGKFGRSEARSWVVAMILFVGGGVSLCLGALWLACFLKSIGVSNSLD
LVGAFKIGVLPFLIGKIVKIALVVQGRSVRRLFIGK"
misc_feature complement(410436..410939)
/locus_tag="CTDLC_0359"
/note="Uncharacterized conserved protein [General function
prediction only]; Region: BioY; COG1268"
/db_xref="CDD:224187"
gene complement(411275..411901)
/locus_tag="CTDLC_0360"
/db_xref="GeneID:12387848"
CDS complement(411275..411901)
/locus_tag="CTDLC_0360"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812291.1"
/db_xref="GI:385244447"
/db_xref="GeneID:12387848"
/translation="MRKAFLFGSVGCLCLLVTLESSGEGLYRGSNGRMTFISAVESAN
SQLELERKKEQRVIEILKEICKEIGVYESLFNEVTDSLEFCELLKKILAEKDSEDFLE
DVSTQDSLSSNEQPISEQTIGDRVEESAMISECMIKDVLNALQQCTESFQRKEEEASF
LERKDLELRERELAFKEERLSWEREKAEKEWAWKKEQYIRDLVKREQK"
gene complement(412063..412923)
/gene="dapA"
/locus_tag="CTDLC_0361"
/db_xref="GeneID:12387849"
CDS complement(412063..412923)
/gene="dapA"
/locus_tag="CTDLC_0361"
/EC_number="4.2.1.52"
/codon_start=1
/transl_table=11
/product="Dihydrodipicolinate synthase"
/protein_id="YP_005812292.1"
/db_xref="GI:385244448"
/db_xref="GeneID:12387849"
/translation="MSVLGACITPFKADLSIDFAALESVVRSQEHAGNGIILFGSTGE
GLSLTYEEKLSILSFVSTLNLNVPIFVGVTATSVQETMSWIDFAQQWPIDGFLVPTPL
YTRPGLNGQKAWFDRILSVSRKPIILYNNPIRTGVSLYPEVVKSFVSHPLCIGVKDSG
GSAQACELFAESGLRVFCGDDNLWPDMRLSGASGVISVLANVWPELARDYVAQGRPIE
AWKKVCSWLNLSTNPLGIKALMAAQKMIECDAVRPPLSIRDLQRRDELADILACRATL
QTELLSVCRQ"
misc_feature complement(412105..412920)
/gene="dapA"
/locus_tag="CTDLC_0361"
/note="dihydrodipicolinate synthase; Region: dapA;
TIGR00674"
/db_xref="CDD:129757"
misc_feature complement(412114..412917)
/gene="dapA"
/locus_tag="CTDLC_0361"
/note="Dihydrodipicolinate synthase family; Region:
DHDPS-like; cd00408"
/db_xref="CDD:188630"
misc_feature complement(order(412453..412455,412537..412539,
412798..412806,412813..412815,412906..412908))
/gene="dapA"
/locus_tag="CTDLC_0361"
/note="inhibitor site; inhibition site"
/db_xref="CDD:188630"
misc_feature complement(order(412336..412338,412453..412455,
412537..412539,412798..412806,412813..412815))
/gene="dapA"
/locus_tag="CTDLC_0361"
/note="active site"
/db_xref="CDD:188630"
misc_feature complement(order(412162..412167,412582..412584,
412594..412596,412615..412620,412690..412695,
412783..412788,412801..412803))
/gene="dapA"
/locus_tag="CTDLC_0361"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188630"
misc_feature complement(412453..412455)
/gene="dapA"
/locus_tag="CTDLC_0361"
/note="catalytic residue [active]"
/db_xref="CDD:188630"
gene complement(412933..414228)
/gene="lysC"
/locus_tag="CTDLC_0362"
/db_xref="GeneID:12387850"
CDS complement(412933..414228)
/gene="lysC"
/locus_tag="CTDLC_0362"
/EC_number="2.7.2.4"
/codon_start=1
/transl_table=11
/product="Aspartokinase"
/protein_id="YP_005812293.1"
/db_xref="GI:385244449"
/db_xref="GeneID:12387850"
/translation="MLRQETAPLVCKFGGTSVGTAQSIRRVCEIIQEERPSFVVVSAV
AGVTDWLEEFCRLPKGKRAALTEKIRERHESIAKELGIEVSLAIFWEILEHFEDVEEL
FSEDQARILAIGEDLSSTLICSYCCTYVLPLKRLEARQVILTDSQFLRAVPDLALMQT
AWGELALQEDTIYLMQGFLGATSSGKTTVLGRGGSDFSASLIGELCKARELRIYTDVC
GVHTADPKILKDTQLIDSLTFEEMQELASSGAKVLHQDMLKPCVRAKVPIFVTSTFNV
TKEGTWICASLNESTEGPVIKALSLKSNQALWFVEYNSPLVRLEDVLGCVRSLGFVPG
VVMAQSLGVYFTIDWEEYPQTITKALEAFGTVSCEGPLSLVALVGAKLASWSMSRVFE
ALHRTPVLCWSQTDTVINLIINKDFGVAVTELLHDCLFK"
misc_feature complement(412936..414213)
/gene="lysC"
/locus_tag="CTDLC_0362"
/note="aspartate kinase; Provisional; Region: PRK05925"
/db_xref="CDD:235646"
misc_feature complement(413377..414201)
/gene="lysC"
/locus_tag="CTDLC_0362"
/note="AAK_AK-HSDH-like: Amino Acid Kinase Superfamily
(AAK), AK-HSDH-like; this family includes the N-terminal
catalytic domain of aspartokinase (AK) of the bifunctional
enzyme AK- homoserine dehydrogenase (HSDH). These
aspartokinases are found in such...; Region:
AAK_AK-HSDH-like; cd04243"
/db_xref="CDD:239776"
misc_feature complement(order(413467..413469,413506..413508,
413641..413643,413884..413886,414085..414087,
414193..414195))
/gene="lysC"
/locus_tag="CTDLC_0362"
/note="putative catalytic residues [active]"
/db_xref="CDD:239776"
misc_feature complement(order(413473..413478,413551..413553,
413557..413559,413566..413568,413581..413586,
414184..414189,414193..414195))
/gene="lysC"
/locus_tag="CTDLC_0362"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:239776"
misc_feature complement(order(413644..413655,413884..413886,
414085..414087,414103..414105))
/gene="lysC"
/locus_tag="CTDLC_0362"
/note="aspartate binding site [chemical binding]; other
site"
/db_xref="CDD:239776"
gene complement(414221..415225)
/gene="asd"
/locus_tag="CTDLC_0363"
/db_xref="GeneID:12387851"
CDS complement(414221..415225)
/gene="asd"
/locus_tag="CTDLC_0363"
/EC_number="1.2.1.11"
/codon_start=1
/transl_table=11
/product="Aspartate-semialdehyde dehydrogenase"
/protein_id="YP_005812294.1"
/db_xref="GI:385244450"
/db_xref="GeneID:12387851"
/translation="MTMRIAILGATGLVGQKLIALLQNHKQWEIAELGASSEKHALRY
ESACLWQEPLMGMPESVRDLSIRSVEEIESNIVVSCLPSSVAFSAETTCLSSGKIVFS
NATAYRMHKAVPILIPEINSDHLSLLEEQPFLGKIITNSNCCVSGIALALKPLLLFNI
EHVHVITLQSASGAGYPGVSSLDLIGNTVPYILGEEEKILRETVKILGQPGFPAEFSI
TASVHRVPVAHGHVISVHVMFDQEVDLEEITSCYEKDSATYVLYDSPWHPQVRKDLAH
DDMRLHIGPISYGGNTRTIKMCILLHNLVRGAAGALIANMNLFRDRGGFVHQERLTYA
"
misc_feature complement(414257..415225)
/gene="asd"
/locus_tag="CTDLC_0363"
/note="aspartate-semialdehyde dehydrogenase; Reviewed;
Region: PRK08664"
/db_xref="CDD:236329"
misc_feature complement(414851..415216)
/gene="asd"
/locus_tag="CTDLC_0363"
/note="Semialdehyde dehydrogenase, NAD binding domain;
Region: Semialdhyde_dh; smart00859"
/db_xref="CDD:214863"
gene complement(415235..415996)
/gene="dapB"
/locus_tag="CTDLC_0364"
/db_xref="GeneID:12387852"
CDS complement(415235..415996)
/gene="dapB"
/locus_tag="CTDLC_0364"
/EC_number="1.3.1.26"
/codon_start=1
/transl_table=11
/product="Dihydrodipicolinate reductase"
/protein_id="YP_005812295.1"
/db_xref="GI:385244451"
/db_xref="GeneID:12387852"
/translation="MRVADSIMKKSIGLVGDTGRMGVLLTQALLCRPHCFLGKGFSRR
SQTSLEEVVTENDILVDFSSPEVTSLLLDFLLKTPRPVIIGTTGFTNDSGVKTKLSAL
SEYVPVVVCANTSLGAYVQKRLAAFAAKLFSTSYDVRILETHHRAKADAISGTAISLA
EAIRSAKAESYEEEPEPFIEMHGSRLGNVCGEHEVSFVGEDERFVIRHEVFSRRVFSG
GVLLILEKIMGEGLPKGYYTSDVLYESLFQEKVFG"
misc_feature complement(415268..415981)
/gene="dapB"
/locus_tag="CTDLC_0364"
/note="Dihydrodipicolinate reductase [Amino acid transport
and metabolism]; Region: DapB; COG0289"
/db_xref="CDD:223366"
misc_feature complement(415658..415963)
/gene="dapB"
/locus_tag="CTDLC_0364"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:216304"
misc_feature complement(415271..415648)
/gene="dapB"
/locus_tag="CTDLC_0364"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:218479"
gene complement(416173..417900)
/locus_tag="CTDLC_0365"
/db_xref="GeneID:12387853"
CDS complement(416173..417900)
/locus_tag="CTDLC_0365"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812296.1"
/db_xref="GI:385244452"
/db_xref="GeneID:12387853"
/translation="MVSRVPGSSDPVDVNALSNLSPVQNQNSGVSVSAISLPNETVSK
SGKTLKYSTELIAGIVVLGVALAIVAIALTILAPGVPQSIVLAIAFSGISVGGVTTLR
SLINGIKTVVAPRMTFRQRAKSAALLGAGLTGAGLVLKLGSSYIPGGYGSALGKFGDI
SYNRGSGALFAGFAHYLYVRFFQSKKAASGEALTPEEMLIEGAKIRKLANGLVLLGVG
FACLGIALAVVGTLAVTGGAATALIVLAPPLISLGISLVISNMLHTTLGQWRAFARAQ
QDQDLLVDTKLKNISQADFSYRVDNNIEVVVDPRESNLPSIERLSQGEIDAALSLTKK
QQRILILSGLLLLAGVTCTLLAGFGGLPAVQVLLLFSIGGAVSSSAVPMVVSGMVHVA
HQLKARLQISLARRREARLKARMIREMDNRRWGESRVGLLSKKEQEETWKLVGKPVIF
QTEQAIREYVNGATKEERFQSILVATIILLAGLGVLSLTLIPGLAPISGGILAIGGAL
LGISITMYLQRFIQWLYEQLIKLRDYIQNRQSVIVQGASACDFDAEDIIVDLVAESFE
VDGDSFVES"
gene 418070..419392
/gene="aroA"
/locus_tag="CTDLC_0366"
/db_xref="GeneID:12387854"
CDS 418070..419392
/gene="aroA"
/locus_tag="CTDLC_0366"
/EC_number="2.5.1.19"
/codon_start=1
/transl_table=11
/product="3-phosphoshikimate 1-carboxyvinyltransferase"
/protein_id="YP_005812297.1"
/db_xref="GI:385244453"
/db_xref="GeneID:12387854"
/translation="MVSSNQDLLISPSIPYGEIAVPPSKSHSLRAILFASLSKGTSII
ENCLFSPDSQAMLTACEKMGAHVRRIGDSLHIQGNPDPHHCHPRYFHMGNSGIALRFL
TALSTLSPTPTLITGSHTLKRRPIAPLLSSLKQLGAHIRQKTSSSIPFTIHGPLSPGH
VTISGQDSQYASALAITAALAPYPLSFSIENLKERPWFDLTLDWLHSLNISFLRDQDS
LTFPGGQSLESFSYSVPGDYSSAAFLASFGLLSSSSKPTILRNLSSQDSQGDKLLFSL
LKQLGAHILIGKHHIEMHPSSFSGGEIDMDPFIDALPILAVLCCFAKNPSRLYNALGA
KDKESNRIEAIAHELQKMGGSVHPTRDGLYIEPSRLHGAVVDSHNDHRIAMALAVAGV
HASSGQTLLCNTQCINKSFPYFVIAAQTLHANVRHYQADFPLRSSFCR"
misc_feature 418088..419344
/gene="aroA"
/locus_tag="CTDLC_0366"
/note="5-enolpyruvylshikimate-3-phosphate synthase [Amino
acid transport and metabolism]; Region: AroA; COG0128"
/db_xref="CDD:223206"
misc_feature 418115..419314
/gene="aroA"
/locus_tag="CTDLC_0366"
/note="EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP)
to form...; Region: EPSP_synthase; cd01556"
/db_xref="CDD:238797"
misc_feature order(418130..418141,418769..418780)
/gene="aroA"
/locus_tag="CTDLC_0366"
/note="hinge; other site"
/db_xref="CDD:238797"
misc_feature order(418142..418147,418157..418159,418349..418351,
418355..418360,418439..418441,418568..418576,
418649..418651,418658..418660,418997..418999,
419066..419068,419078..419083,419090..419092,
419210..419215,419294..419296)
/gene="aroA"
/locus_tag="CTDLC_0366"
/note="active site"
/db_xref="CDD:238797"
gene 419334..419888
/gene="aroL"
/locus_tag="CTDLC_0367"
/db_xref="GeneID:12387855"
CDS 419334..419888
/gene="aroL"
/locus_tag="CTDLC_0367"
/EC_number="2.7.1.71"
/codon_start=1
/transl_table=11
/product="shikimate kinase"
/protein_id="YP_005812298.1"
/db_xref="GI:385244454"
/db_xref="GeneID:12387855"
/translation="MPTFDTTKQIFLCGLPSVGKTSFGQHLSQFLSLPFFDTDHLLSD
RFHGDSPKTIYQRYGEEGFCREEFLALTSVPVIPSIVALGGCTPIIEPSYAHILGRNS
ALLVLLELPIATLCQRLQHRSIPERLAHAPSLEDTLSQRLDKLRSLTSNAFSLRAETS
SEAVMRDCQSFCLRFLSTKESSYA"
misc_feature 419355..419864
/gene="aroL"
/locus_tag="CTDLC_0367"
/note="shikimate kinase; Provisional; Region: PRK00625"
/db_xref="CDD:134335"
misc_feature 419361..419768
/gene="aroL"
/locus_tag="CTDLC_0367"
/note="Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway which
converts erythrose-4-phosphate to chorismic acid, found in
bacteria, fungi and plants. Chorismic acid is a important
intermediate in the synthesis...; Region: SK; cd00464"
/db_xref="CDD:238260"
misc_feature order(419382..419399,419685..419687,419712..419714)
/gene="aroL"
/locus_tag="CTDLC_0367"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:238260"
misc_feature order(419394..419396,419442..419444,419448..419450)
/gene="aroL"
/locus_tag="CTDLC_0367"
/note="magnesium binding site [ion binding]; other site"
/db_xref="CDD:238260"
misc_feature order(419448..419450,419523..419525,419532..419534,
419583..419591)
/gene="aroL"
/locus_tag="CTDLC_0367"
/note="putative shikimate binding site; other site"
/db_xref="CDD:238260"
gene 419881..420954
/gene="aroC"
/locus_tag="CTDLC_0368"
/db_xref="GeneID:12387856"
CDS 419881..420954
/gene="aroC"
/locus_tag="CTDLC_0368"
/EC_number="4.2.3.5"
/codon_start=1
/transl_table=11
/product="Chorismate synthase"
/protein_id="YP_005812299.1"
/db_xref="GI:385244455"
/db_xref="GeneID:12387856"
/translation="MHNQYGSIFSITTWGESHGPAIGVVIDGCPAGLSLSPEDFLPAM
ARRRPGQLHTSPRQEPDLVTILSGVYQNKTTGTPISLLIENKDVSSSSYEQLQHCYRP
GHAQFAYEGKYGFADNRGGGRASARETASRVAAGVIAKKILLSQRIETLAFLSGFGTL
ESKNYPKLSDSLIQQVHTSPFYTLLPQEEIQNLLLLNPDDSFGGVVSFITSPLPIGLG
EPVFGKLPALLAAAMMSIPAAKGFEIGAGFSSSQMTGSAYLDAFIADESGVSLQSNRC
GGALGGISIGQPLEGRVAFKPTSSIKKPCSSVLKDGTLIAYRTPNQGRHDPCVAIRAV
AVVEAMLDLTLVDLLLQHRCTQL"
misc_feature 419881..420942
/gene="aroC"
/locus_tag="CTDLC_0368"
/note="Chorismate synthase [Amino acid transport and
metabolism]; Region: AroC; COG0082"
/db_xref="CDD:223160"
misc_feature 419905..420900
/gene="aroC"
/locus_tag="CTDLC_0368"
/note="Chorismase synthase, the enzyme catalyzing the
final step of the shikimate pathway; Region:
Chorismate_synthase; cd07304"
/db_xref="CDD:143612"
misc_feature order(419908..419928,419947..419949,419953..419955,
419959..419961,419971..419976,420070..420075,
420079..420084,420103..420108,420112..420114,
420118..420120,420124..420126,420205..420219,
420247..420252,420274..420276,420478..420495,
420526..420528,420532..420540,420550..420552,
420556..420561,420568..420576,420580..420585,
420589..420591,420598..420612,420619..420624,
420628..420633,420643..420648,420706..420708,
420715..420723,420727..420735,420754..420756,
420760..420771,420778..420780,420898..420900)
/gene="aroC"
/locus_tag="CTDLC_0368"
/note="Tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:143612"
misc_feature order(419932..419934,420019..420021,420187..420192,
420250..420261,420268..420270,420589..420594,
420763..420768,420772..420780,420865..420867,
420877..420879)
/gene="aroC"
/locus_tag="CTDLC_0368"
/note="active site"
/db_xref="CDD:143612"
misc_feature order(420187..420195,420247..420249,420253..420255,
420586..420594,420766..420768,420772..420780,
420856..420858,420865..420867,420874..420876)
/gene="aroC"
/locus_tag="CTDLC_0368"
/note="FMN-binding site [chemical binding]; other site"
/db_xref="CDD:143612"
gene 420939..422072
/gene="aroB"
/locus_tag="CTDLC_0369"
/db_xref="GeneID:12387857"
CDS 420939..422072
/gene="aroB"
/locus_tag="CTDLC_0369"
/EC_number="4.2.3.4"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate synthase"
/protein_id="YP_005812300.1"
/db_xref="GI:385244456"
/db_xref="GeneID:12387857"
/translation="MYPIMIELVTDSPHPIHLVDSLQNPKLFASLSTDFPLIFITNTK
LNALILPPLLDLARSLGFSVETLTIPEGEETKTGDTFLSLHQQLTDLNVPRQATLIGV
GGGVILDIAGFVAATHCRGMPFIAIPTTLVAMIDASIGGKNGINLNHIKNRIGSFYLP
KAVWICPRKLSFLPQQELHHGIAECIKHAYIADSAILPLLQDPNALKKEDKLSLLIKK
NCLCKASVVQQDVRDYAKRQILNFGHTLGHALEMLFIGKIPHSCAISVGMVLETKLSL
SLGVARSPAILHSLIQDLLRYQLPVSLKDLYMRAQIPPHNCDQILSALTYDKKKQNTP
LPPFVMIEEIGLAASFDGRFCQTISKHILTKVLEEEFYAMHNN"
misc_feature 421056..422039
/gene="aroB"
/locus_tag="CTDLC_0369"
/note="Dehydroquinate synthase (DHQS) catalyzes the
conversion of DAHP to DHQ in shikimate pathway for
aromatic compounds synthesis; Region: DHQS; cd08195"
/db_xref="CDD:173954"
misc_feature order(421062..421064,421248..421256,421263..421265,
421272..421274,421323..421328,421332..421334,
421389..421391,421398..421400,421443..421445,
421467..421469,421488..421490,421500..421502,
421668..421670,421680..421682,421716..421718)
/gene="aroB"
/locus_tag="CTDLC_0369"
/note="active site"
/db_xref="CDD:173954"
misc_feature order(421170..421172,421191..421196,421275..421277,
421284..421286,421290..421298,421362..421367,
421392..421409)
/gene="aroB"
/locus_tag="CTDLC_0369"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173954"
misc_feature order(421488..421490,421668..421670,421716..421718)
/gene="aroB"
/locus_tag="CTDLC_0369"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173954"
gene 421987..423489
/gene="aroDE"
/locus_tag="CTDLC_0370"
/db_xref="GeneID:12387858"
CDS 421987..423489
/gene="aroDE"
/locus_tag="CTDLC_0370"
/EC_number="1.1.1.25"
/codon_start=1
/transl_table=11
/product="shikimate 5-dehydrogenase"
/protein_id="YP_005812301.1"
/db_xref="GI:385244457"
/db_xref="GeneID:12387858"
/translation="MMDDFAKLYLNTFLQKSWRKNSMLCTTISGPSFLEAKKQILRSL
KECHCFEMRVDLLSVSCLELKKLMELAPISILAWKKPESCSQADWIDKMQSLAELNPN
YLDLEKDFPEEDMIRIRQLHPQIKIIRSLHTSEHTDIIQLYAHMRSSAADYYKFAVSS
SSTTDLLDICHQKRSLPENTTVVCLGGMGRPSRILSPILQNPFTYARSTGSSPVAPGQ
FSLKHHYFYNFASLSAQSPICALIGDTSRSIGHLTHNPFFSQLGVACPYIKLPLTPQE
LPKFFSTIRTQPFLGVSVTSPLKTAVLPFLDKQAPSVKASGSCNTLVIRQGEIEGHDT
DGEGLFSVLMQHQIPLNNQRVAIIGAGGAAQSIATRLSRANCELLIFNRTKAHAEDLA
SRCQAKAFSLEELPLHRVSLIINCLPPSCTIPKAVAPCVVDINTIPKHSTFTQYARSQ
GSSIIYGHEMFTQQALLQFRLWFPTLSFKHLEKTFIRRAAVLASLFSIAP"
misc_feature 422053..423474
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="bifunctional 3-dehydroquinate dehydratase/shikimate
dehydrogenase protein; Reviewed; Region: aroDE; PRK09310"
/db_xref="CDD:137204"
misc_feature 422053..422679
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="Type I 3-dehydroquinase, (3-dehydroquinate
dehydratase or DHQase); Region: DHQase_I; cd00502"
/db_xref="CDD:188633"
misc_feature order(422065..422067,422137..422139,422143..422145,
422221..422223,422380..422382,422449..422451,
422563..422565,422626..422631,422638..422640)
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="active site"
/db_xref="CDD:188633"
misc_feature 422449..422451
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="catalytic residue [active]"
/db_xref="CDD:188633"
misc_feature order(422485..422487,422497..422499,422506..422508,
422566..422571,422581..422583,422656..422658,
422668..422670,422677..422679)
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188633"
misc_feature 422707..422952
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="Shikimate dehydrogenase substrate binding domain;
Region: Shikimate_dh_N; pfam08501"
/db_xref="CDD:149523"
misc_feature 422986..423405
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="NAD(P) binding domain of Shikimate dehydrogenase;
Region: NAD_bind_Shikimate_DH; cd01065"
/db_xref="CDD:133443"
misc_feature order(422989..422991,423292..423294,423367..423369,
423376..423378)
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="shikimate binding site; other site"
/db_xref="CDD:133443"
misc_feature order(423064..423066,423073..423075,423130..423135,
423232..423240,423286..423288,423355..423357,
423364..423369)
/gene="aroDE"
/locus_tag="CTDLC_0370"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133443"
gene 423531..424316
/locus_tag="CTDLC_0371"
/db_xref="GeneID:12387859"
CDS 423531..424316
/locus_tag="CTDLC_0371"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812302.1"
/db_xref="GI:385244458"
/db_xref="GeneID:12387859"
/translation="MRLCFILFLLLSPLISEASQHIITVKTIHEIASDILYDDANYWL
IFDIDDVLFEGAEALSHSAWFERSIQGMRALGTSEQEAWDTLYPDWLSIQRQGSIKQI
ETAIPLLITKVQNQNKIVFAYSERKVCAQDVTLEQLAKINLSFEKANLPYTSLPSNIC
FTKGVLFGSEIHKGPGLQRFLDAQPSLPEKVIYIDNEKYNVLRIGEVCKQKNIPYLGI
VYTASKYHPPIYLPDIARIQYLYRQKLISNEAAALLSRHRLDK"
misc_feature 423594..424313
/locus_tag="CTDLC_0371"
/note="Protein of unknown function (DUF2608); Region:
DUF2608; pfam11019"
/db_xref="CDD:220945"
gene 424386..425786
/locus_tag="CTDLC_0372"
/db_xref="GeneID:12387860"
CDS 424386..425786
/locus_tag="CTDLC_0372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812303.1"
/db_xref="GI:385244459"
/db_xref="GeneID:12387860"
/translation="MLEVVVSFRSVLLTALLSLSFTTTMQAAHHHYHRYTDKLHRQNH
KKDLISPKPTEQEACNTSSLSKELIPLSEQRGLLSPICDFISERPCLHGVSVRNLKQA
LKNSAGTQIALDWSILPQWFNPRVSHAPKLSIRDFGYSAHQTVTEATPPCWQNCFNPS
AAVTIYDSSYGKGVFQISYTLVRYWRENAATAGDAMMLAGSINDYPSRQNIFSQFTFS
QNFPNERVSLTIGQYSLYAIDGTLYNNDQQLGFISYALSQNPTATYSSGSLGAYLQVA
PTASTSLQIGFQDAYNISGSSIKWSNLTKNRYNFHGFASWAPRCCLGSGQYSVLLYVT
RQVPEQMEQTMGWSVNASQHISSKLYVFGRYSGVTGHVFPINRTYSFGMASANLFNRN
PQDLFGIACAFNNVHLSASPNTKRKYETVIEGFATIGCGPYLSFAPDFQLYLYPALRP
NKQSARVYSVRANLAI"
misc_feature 424920..425777
/locus_tag="CTDLC_0372"
/note="Carbohydrate-selective porin, OprB family; Region:
OprB; pfam04966"
/db_xref="CDD:191144"
misc_feature <425421..425768
/locus_tag="CTDLC_0372"
/note="Carbohydrate-selective porin [Cell envelope
biogenesis, outer membrane]; Region: OprB; COG3659"
/db_xref="CDD:33457"
gene 425855..426442
/locus_tag="CTDLC_0373"
/db_xref="GeneID:12387861"
CDS 425855..426442
/locus_tag="CTDLC_0373"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812304.1"
/db_xref="GI:385244460"
/db_xref="GeneID:12387861"
/translation="MPYGTRYPTLAFHTGGVGESDDGMPPQPFETFCYDSALLQAKIE
NFNIVPYTSVLPKELFGNILPVDQCTKFFKHGAVLEVIMAGRGATVTDGTQAIATGVG
ICWGKDKNGELIRGWAAEYVEFFPTWIDDEIAESHAKMWLKKSLQHELDLRSISKHSE
FQYFHNYINIRKKFGFCLTALGFLNFENAAPAVIQ"
misc_feature 425861..426391
/locus_tag="CTDLC_0373"
/note="Pyruvoyl-dependent arginine decarboxylase
(PvlArgDC) [Amino acid transport and metabolism];
Region: COG1945"
/db_xref="CDD:224856"
gene 426458..427909
/gene="arcD"
/locus_tag="CTDLC_0374"
/db_xref="GeneID:12387862"
CDS 426458..427909
/gene="arcD"
/locus_tag="CTDLC_0374"
/codon_start=1
/transl_table=11
/product="Arginine/ornithine antiporter"
/protein_id="YP_005812305.1"
/db_xref="GI:385244461"
/db_xref="GeneID:12387862"
/translation="MLLKKRSPTSILGTLALTGIVISSMIGGGIFSLPQNMVASASAG
AVMLAWMLSGIGIFFIANTFKTLSIIRPDLKAGIYTYSREGFGPYVGFTIAWGYWLCQ
IFGNVDYAVITMDALNYFFPPYFAGGNTIPAILLGSLLIWIFNYIVLRGIRQASFVNI
IGAVCTLIPLLLFILITARFFKFSIFKTDFWGTAPQHTLGSIGSQLKSTMLVTLWAFI
GIEGAVVISGRAANLSSVGKATILGFSGCLLIYVLLSLLPFGSLFQYQLAKIADPSTA
GVLNILVGKWGEVLMNTGLLIAVLTSWLSWTILASEIPYAAAKNGTFPECFAIENSKH
APSFSLFMTSGLMQITMLLVYFSSNAWNTMLEITGVMVLPAYLTSSLFLVKFSLSKKY
PKQAAIKARIAMITSLLGSLYSLWLIYAGGLQHLFMVAILLALGIPFYVDSGIRHKQE
KTFLNRKEILKMTIVALAALLAIFLFSANKIHL"
misc_feature 426491..427852
/gene="arcD"
/locus_tag="CTDLC_0374"
/note="transporter, basic amino acid/polyamine antiporter
(APA) family; Region: 2A0302; TIGR00905"
/db_xref="CDD:129983"
gene 428081..429139
/gene="yjbR"
/locus_tag="CTDLC_0375"
/db_xref="GeneID:12387863"
CDS 428081..429139
/gene="yjbR"
/locus_tag="CTDLC_0375"
/codon_start=1
/transl_table=11
/product="D-amino acid oxidase family"
/protein_id="YP_005812306.1"
/db_xref="GI:385244462"
/db_xref="GeneID:12387863"
/translation="MHIAVLGAGYAGLSVTWHLLLYTQGRISVDLFDPTPIGSGASGL
SSGLLHGFTGKKAIKPPLANLGITTTHSLITKASLSIGEPIVTSNGILRPAASQEQAT
IFMQRAQEFPDETEWWDKARCEITVPGMVIADGLGALYIKHGVTIDNDKYISGLWNAC
ASLGTQYYDELIDDISAIAEFYDHIIVTPGANADILPELKHLPLSKVKGQLVEIAWPA
EIPMPPFSINGPKYMVADTTRNTCILGATFEHNQPDATPDAQVAYQEIMPPILALFPG
LKDAQVLNYYAGMRSSSPTHLPMISRVQEKLWYLGGLGSKGLLYHGLLGDMLAQALLR
DSTAYIAKEFLYTPEGAA"
misc_feature 428081..429124
/gene="yjbR"
/locus_tag="CTDLC_0375"
/note="Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism]; Region: DadA; COG0665"
/db_xref="CDD:223737"
misc_feature 428090..>428191
/gene="yjbR"
/locus_tag="CTDLC_0375"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; cl17500"
/db_xref="CDD:248054"
gene complement(429181..430194)
/gene="mdhC"
/locus_tag="CTDLC_0376"
/db_xref="GeneID:12387864"
CDS complement(429181..430194)
/gene="mdhC"
/locus_tag="CTDLC_0376"
/EC_number="1.1.1.37"
/codon_start=1
/transl_table=11
/product="malate dehydrogenase"
/protein_id="YP_005812307.1"
/db_xref="GI:385244463"
/db_xref="GeneID:12387864"
/translation="MRFVKVKRGWLMVSQTVSVAVTGGTGQIAYSFLFSLAHGDVFGL
DCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSV
PRGPGMERRDLLKKNGEIFATQGKALNTTAKRDAKIFVVGNPVNTNCWIAMNHAPRLL
RKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALINDRPIA
ETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARSIYQPKEGEWFSS
GVCSDHNPYGLPEDLIFGFPCRMLATGEYEVIPRLPWDAFIRGKMQISLDEILQEKAS
VSL"
misc_feature complement(429187..430155)
/gene="mdhC"
/locus_tag="CTDLC_0376"
/note="malate dehydrogenase; Provisional; Region:
PRK05442"
/db_xref="CDD:180084"
misc_feature complement(429187..430152)
/gene="mdhC"
/locus_tag="CTDLC_0376"
/note="Chloroplast-like malate dehydrogenases; Region:
MDH_choloroplast_like; cd01338"
/db_xref="CDD:133423"
misc_feature complement(order(429598..429600,429694..429696,
429766..429768,429772..429774,429892..429894,
430030..430035,430111..430119,430126..430128))
/gene="mdhC"
/locus_tag="CTDLC_0376"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133423"
misc_feature complement(order(429427..429429,429436..429447,
429457..429465,429481..429483,429652..429654,
429664..429666,429673..429678,429979..429987,
429991..429996,430003..430005,430012..430017,
430075..430077,430081..430083,430090..430095,
430105..430107))
/gene="mdhC"
/locus_tag="CTDLC_0376"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133423"
misc_feature complement(order(429445..429447,429598..429600,
429673..429675,429682..429684,429865..429867,
429883..429885))
/gene="mdhC"
/locus_tag="CTDLC_0376"
/note="malate binding site [chemical binding]; other site"
/db_xref="CDD:133423"
gene complement(430352..430492)
/gene="ltuA"
/locus_tag="CTDLC_0377"
/db_xref="GeneID:12387865"
CDS complement(430352..430492)
/gene="ltuA"
/locus_tag="CTDLC_0377"
/codon_start=1
/transl_table=11
/product="Late transcription unit A protein"
/protein_id="YP_005812308.1"
/db_xref="GI:385244464"
/db_xref="GeneID:12387865"
/translation="MFFIRARFIGFLDVHGYLAAKKGQQVMRSGSSIWVGSHGPIFYK
VF"
gene complement(430607..432184)
/gene="pgi"
/locus_tag="CTDLC_0378"
/db_xref="GeneID:12387866"
CDS complement(430607..432184)
/gene="pgi"
/locus_tag="CTDLC_0378"
/EC_number="5.3.1.9"
/EC_number="5.1.3.15"
/note="glucose-6-phosphate isomerase"
/codon_start=1
/transl_table=11
/product="Glucose-6 phosphate 1-epimerase"
/protein_id="YP_005812309.1"
/db_xref="GI:385244465"
/db_xref="GeneID:12387866"
/translation="MMGKGFLDCESLVALQEMALHPIDLTASGCLSEERIQKNSLSAE
GFTYSYATERVDDRCLEALQGLTEERELIKQMECMQQGAIMNRIEGFQSESRPVLHTA
TRAWVRDQDLHEEAAAIARHSKEEALRLAEFLYIARAKFSTLVQMGIGGSELGPKAMY
FAMQGSCPSDKRIFFVSNIDPDNAAEVLREIDLEQTLVVVVSKSGTTLEPAANEELFR
QAYQNKGLSIAEHFVAVTSQGSPMDDKSRYLEVFHLWDSIGGRFSATSMVGGVVLGFA
FGYEAFIEFLQGAAAIDAHALTPKMRENLPLLSAMLGVWNRNLLGYPTTAVIPYSTGL
KYFTAHLQQCGMESNGKSISREGKEISFRTSPIIWGDVGTNCQHSFFQSLHQGTDIVP
VEFIGFLHNQRGLDCVLSGSSSSQKLFANLVAQSLALAQGRDNANSNKRFKGNRPSSI
LVAQQLSPRIAGSLLAFYEHKFAFQGFCWGINSFDQEGVSLGKELATQIIGIMSGNAP
VEFSEARGMLRLFNVLT"
misc_feature complement(430616..432184)
/gene="pgi"
/locus_tag="CTDLC_0378"
/note="glucose-6-phosphate isomerase; Provisional; Region:
pgi; PRK14095"
/db_xref="CDD:237608"
misc_feature complement(431357..431767)
/gene="pgi"
/locus_tag="CTDLC_0378"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_1; cd05015"
/db_xref="CDD:240146"
misc_feature complement(order(431405..431407,431564..431566,
431573..431581,431729..431734,431738..431740))
/gene="pgi"
/locus_tag="CTDLC_0378"
/note="active site"
/db_xref="CDD:240146"
misc_feature complement(order(431537..431539,431546..431548,
431558..431560,431645..431656))
/gene="pgi"
/locus_tag="CTDLC_0378"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240146"
misc_feature complement(430688..431218)
/gene="pgi"
/locus_tag="CTDLC_0378"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_2; cd05016"
/db_xref="CDD:240147"
misc_feature complement(order(430904..430906,430913..430915,
430937..430939,430943..430945,431027..431029,
431036..431041,431048..431053,431060..431068,
431072..431074,431132..431137,431144..431146,
431156..431158,431192..431194,431216..431218))
/gene="pgi"
/locus_tag="CTDLC_0378"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240147"
misc_feature complement(order(431144..431146,431156..431158))
/gene="pgi"
/locus_tag="CTDLC_0378"
/note="active site"
/db_xref="CDD:240147"
gene complement(432297..433640)
/gene="hflX"
/locus_tag="CTDLC_0379"
/db_xref="GeneID:12387867"
CDS complement(432297..433640)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="protein HflX"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_005812310.1"
/db_xref="GI:385244466"
/db_xref="GeneID:12387867"
/translation="MKKDNRDGKKEWQSAIGWRFLLPREEQDPAQALAVCCYTNRAEQ
DRVPEYVEELISLANSCDLSVLETCTWLLRAPSSSFYLNEGKLEEIERILEEFPTIGT
LLIDEEISPSQQRNLEKRLRVVVLDRTELILEIFASRALTAEAGLQVELAQARYLLPR
LKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERIHKLSRDLKNVERQREERR
KAKKRNQIPTFALIGYTNSGKSTLLNLLTSADTYVENKLFATLDPKTRRCVLPCGQRV
LLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPLALEYVETTKAILQEL
GITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIRELLRSMEDMVQEE
YPQATLHLPYKEYGLFTELCDAGLVISHYYENDLLIVKAFLPNNLQKRYSEYIVE"
misc_feature complement(432303..433562)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="GTPases [General function prediction only]; Region:
HflX; COG2262"
/db_xref="CDD:225171"
misc_feature complement(433230..433496)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="GTP-binding GTPase N-terminal; Region: GTP-bdg_N;
pfam13167"
/db_xref="CDD:205348"
misc_feature complement(432474..433079)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="HflX GTPase family; Region: HflX; cd01878"
/db_xref="CDD:206666"
misc_feature complement(432921..432944)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="G1 box; other site"
/db_xref="CDD:206666"
misc_feature complement(order(432522..432530,432594..432596,
432600..432605,432918..432929,432933..432935))
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206666"
misc_feature complement(432840..432881)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="Switch I region; other site"
/db_xref="CDD:206666"
misc_feature complement(432849..432851)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="G2 box; other site"
/db_xref="CDD:206666"
misc_feature complement(432792..432803)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="G3 box; other site"
/db_xref="CDD:206666"
misc_feature complement(432723..432794)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="Switch II region; other site"
/db_xref="CDD:206666"
misc_feature complement(432594..432605)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="G4 box; other site"
/db_xref="CDD:206666"
misc_feature complement(432522..432530)
/gene="hflX"
/locus_tag="CTDLC_0379"
/note="G5 box; other site"
/db_xref="CDD:206666"
gene complement(433653..434453)
/gene="phnP"
/locus_tag="CTDLC_0380"
/db_xref="GeneID:12387868"
CDS complement(433653..434453)
/gene="phnP"
/locus_tag="CTDLC_0380"
/EC_number="3.-.-.-"
/codon_start=1
/transl_table=11
/product="Metal-dependent hydrolase"
/protein_id="YP_005812311.1"
/db_xref="GI:385244467"
/db_xref="GeneID:12387868"
/translation="MEETSSSGKIVFLGTGDSEGIPVPFCSCEVCSQGRICRLRSSVW
VQSQGKNFIIDTGPDLRTQLLRYRVPRLDGVFLTHPHYDHIGGIDDLRSWYITHLESV
PIILSSFTYDYLCKTKEHLVQKETPNNSLAASLRYTILNEKCGEQEFLGIPFTYVSYF
QKNCQVTGYRFGDLAYLTDMSHYDEQIVDYLQGVNTIIVSASLGVLPKAFGSRTPSHL
TLEQADLLMEKVGASRLVITHVSHYLHKVLEKDVTRECAYDGMELLWT"
misc_feature complement(433656..434441)
/gene="phnP"
/locus_tag="CTDLC_0380"
/note="Metal-dependent hydrolases of the beta-lactamase
superfamily I [General function prediction only]; Region:
PhnP; COG1235"
/db_xref="CDD:224156"
misc_feature complement(433665..434429)
/gene="phnP"
/locus_tag="CTDLC_0380"
/note="putative hydrolase; Provisional; Region: PRK02113"
/db_xref="CDD:179371"
gene complement(434482..435261)
/gene="artJ"
/locus_tag="CTDLC_0381"
/db_xref="GeneID:12387869"
CDS complement(434482..435261)
/gene="artJ"
/locus_tag="CTDLC_0381"
/codon_start=1
/transl_table=11
/product="Arginine-binding protein"
/protein_id="YP_005812312.1"
/db_xref="GI:385244468"
/db_xref="GeneID:12387869"
/translation="MSMCIKRKKTWIAFLAVVCSFCLTGCLKEGGDSNSEKFIVGTNA
TYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITG
MSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQS
LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVL
GYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN"
misc_feature complement(434494..435147)
/gene="artJ"
/locus_tag="CTDLC_0381"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(434494..435147)
/gene="artJ"
/locus_tag="CTDLC_0381"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature complement(order(434692..434694,434806..434808,
434935..434937,435010..435012,435124..435126))
/gene="artJ"
/locus_tag="CTDLC_0381"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature complement(order(434713..434715,434731..434733,
434743..434745))
/gene="artJ"
/locus_tag="CTDLC_0381"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature complement(434599..434616)
/gene="artJ"
/locus_tag="CTDLC_0381"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(435324..436160)
/gene="aroG"
/locus_tag="CTDLC_0382"
/db_xref="GeneID:12387870"
CDS complement(435324..436160)
/gene="aroG"
/locus_tag="CTDLC_0382"
/EC_number="2.5.1.54"
/codon_start=1
/transl_table=11
/product="3-deoxy-7-phosphoheptulonate synthase"
/protein_id="YP_005812313.1"
/db_xref="GI:385244469"
/db_xref="GeneID:12387870"
/translation="MGKKRVPLPHVFNSNRSPVIRLSETVSIGGGTPIIIAGPCTLES
QEHAITLGLQVKSAGAHIFRGSIRKPRTNPHSFQGWPPDHVVWHSRAKAVHGLLTETE
VLDVRDVEITAEHVDLLRVGARNMQNFVLLDEVGQSHRPVILKRNPSATISEWLSAAE
YLLQHASCPGVILCERGIRTFETTTRYTLDLNTVAWIKKETSLPVIVDPSHASGRRDL
VLPLARAAIALGADGLMIEVHEHPELALCDGSQHILPCELEELGLWVQEVGSLETGAV
FV"
misc_feature complement(435339..436160)
/gene="aroG"
/locus_tag="CTDLC_0382"
/note="3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP)
synthase [Amino acid transport and metabolism]; Region:
AroA; COG2876"
/db_xref="CDD:225431"
misc_feature complement(435348..436115)
/gene="aroG"
/locus_tag="CTDLC_0382"
/note="phospho-2-dehydro-3-deoxyheptonate aldolase;
Region: DAHP_synth_Bsub; TIGR01361"
/db_xref="CDD:233375"
gene 436647..437402
/locus_tag="CTDLC_0383"
/db_xref="GeneID:12387871"
CDS 436647..437402
/locus_tag="CTDLC_0383"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812314.1"
/db_xref="GI:385244470"
/db_xref="GeneID:12387871"
/translation="MIARLLKAMFGSIPCYPGYNNIPAYSNSYFYCTLCDGVVSPTNV
DIAIVVPNKPTAHSESKLSVLRCKNHPVKGLHSGGPITSLRGLIPFSSTLLEETHQKM
LNLCARVHCLDVLTVCGTLIASLLAITGAILQFIVAVPIPTFIPLILFGVAIAFYLGA
FLCTRISQKDTLRWQALSKNIIRSSHNVPVQAGTERYTLLTEFPPTCYENHSIDLYSI
RPSSWCAPRVVVKKTACKLSARIQKILKNQRGH"
gene complement(437413..439032)
/locus_tag="CTDLC_0384"
/db_xref="GeneID:12387872"
CDS complement(437413..439032)
/locus_tag="CTDLC_0384"
/codon_start=1
/transl_table=11
/product="membrane associated protein"
/protein_id="YP_005812315.1"
/db_xref="GI:385244471"
/db_xref="GeneID:12387872"
/translation="MCCVDGSNSIQQRMRFCEYRTAAQEAKTSLSSDCSLLEARLALR
ALAKHHEYSAWREAFLRSQERFPSLEADRDIHEDLAASLLQKNIRHSSLTVRVITILA
VGMARDYRLVPIVLQALSDDSDTVREIAVQVAVMYGSSCLLRAVGDLAKNDSSIQVRI
TAYRAAAVLEIQDLVPHLRVVVQNTQLDGTERREAWRSLCVLTRPHSGVLTGIDQALM
TCEMLKEYPEKCTEEQIRTLLAADHPEVQVATLQIILRGGRVFRSSSIMESVQKLACN
SLSARVQMQAAAILYLEGDPFGEDKLTEGLSATSSILCEAASEAVCSLGIHGVHLAGR
FLSKVQGMRSRVNLAFALLVSREKVEEAGDVVASFIHRIEPCRAIEQFLCEDQKIFVA
SSPLQVEIMKRDLAKKIIRLLVAAQYSKAKMVVAQYLAGQQVGWSFCSEVFWEEGDSE
DFVEPLQEESFAFALEKALSFLQREGGEAGLHAVISLYPHSRWQDKLTILEAIAYSEN
RIATCFLRERCLQEAASLQSAAAGAVFALFK"
misc_feature complement(437689..438678)
/locus_tag="CTDLC_0384"
/note="FOG: HEAT repeat [Energy production and
conversion]; Region: COG1413"
/db_xref="CDD:224331"
gene complement(439047..439382)
/gene="ycfF"
/locus_tag="CTDLC_0385"
/db_xref="GeneID:12387873"
CDS complement(439047..439382)
/gene="ycfF"
/locus_tag="CTDLC_0385"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812316.1"
/db_xref="GI:385244472"
/db_xref="GeneID:12387873"
/translation="MTTIFERIIEGAVECDKVFEDENFIVIKDKFPQAPVHLLIIPKK
HIEKLQDIQGDDFLLLAEAGKIIQLMARNFGIENGYRVVVNNGLEGGQSVFHLHIHLL
GGGLLGSIA"
misc_feature complement(439098..439376)
/gene="ycfF"
/locus_tag="CTDLC_0385"
/note="Protein Kinase C Interacting protein related
(PKCI): PKCI and related proteins belong to the ubiquitous
HIT family of hydrolases that act on alpha-phosphates of
ribonucleotides. The members of this subgroup have a
conserved HxHxHxx motif (x is a...; Region: PKCI_related;
cd01276"
/db_xref="CDD:238607"
misc_feature complement(order(439101..439103,439107..439109,
439128..439130,439266..439268,439272..439274,
439293..439298,439302..439304))
/gene="ycfF"
/locus_tag="CTDLC_0385"
/note="nucleotide binding site/active site [active]"
/db_xref="CDD:238607"
gene complement(439379..440293)
/locus_tag="CTDLC_0386"
/db_xref="GeneID:12387874"
CDS complement(439379..440293)
/locus_tag="CTDLC_0386"
/codon_start=1
/transl_table=11
/product="MYG1 protein"
/protein_id="YP_005812317.1"
/db_xref="GI:385244473"
/db_xref="GeneID:12387874"
/translation="MFVVLLSRGSRRIMRMQIPRSVGTHDGSFHADEVTACALLIMFD
LVDENKIVRTRDPQKLAQCEYVCDVGGRYSTEHKRFDHHQVSYTGSWSSAGMVLDYLH
GLGFLSHDEYEYLNNTLVHGVDEQDNGRFFSKEGFCSFSDIIKIYNPLEEGGNTDKEF
FFALRFAIDLLTRLREKFCYDRVCRDIVKQVMEKESVCLRFDRPLAWQENFFSLGGES
HPAAFVSFPCSDQWILRGIPPTLDRRMEVRIPFPEEWAGLLGDQLVQATGIPGAIFCH
KGLFLSVWDSQESCEEALNLVLKQQRLV"
misc_feature complement(439397..440248)
/locus_tag="CTDLC_0386"
/note="Uncharacterized conserved protein related to MYG1
family [Function unknown]; Region: COG4286"
/db_xref="CDD:34008"
gene 440535..442610
/locus_tag="CTDLC_0387"
/db_xref="GeneID:12387875"
CDS 440535..442610
/locus_tag="CTDLC_0387"
/codon_start=1
/transl_table=11
/product="Transporter"
/protein_id="YP_005812318.1"
/db_xref="GI:385244474"
/db_xref="GeneID:12387875"
/translation="MTLFHSHHDAVSPDSYLCSSLQLVGTGVYEGEIEIQNIPSYFLG
FQLPSHCIHLNLKSSLAQLGIDASLLHCELSKNQHRAHIHAQFTGHGPIAESMLALLQ
PGDRVAKLFAADDRRLVRSPDYLESMLKNTDKAGHPLLCFGKKLEHLISFDVVDDRLV
VSLPTLPGVVRYDSDIYGLLPLIQKSLSNPKLSIRHFLALYQQIVEGQHVSCGNHILL
IKTEPLHIRTVFARVVNQLLPQGLSHTSANILEPTTRESGDIFEFFGNPSAQIERIPL
EFFTIEPYKEHSYFCNRDLLQTILQSESEIKKIFETAPKEPVKAATYLSKGSEISSLH
TDSWLTGSAAAYQYSEQADKNEYTHAQPCYPFLEAMEMGLINSEGALLTRYFPSASLK
GMLISYHVRHYLKQIYFQVPSYTHGNYFSHNDRGLLLDLQQADIDVFWADEESGRVLQ
YTKRRDKNSGMFVIKNRVEEFRSAYFIAIYGSRLLENNFSAQLHTLLAGLQQAAHTLG
IPGFSKPTPLAVITGGGTGVMATGNRVAKELGILSCGTVLDLEASPAQIDQPTNEFLD
AKMTYRLPQLIERQEHFYADLPILVVGGVGTDFELYLELVYLKTGAKPPTPIFLIGPI
EYWKEKVAHAYEINLKAGTIRGSEWISNCLYCITSPEAGIAVFEQFLAGELPIGYDYP
PAPDGLVIV"
misc_feature 441939..442574
/locus_tag="CTDLC_0387"
/note="Predicted Rossmann fold nucleotide-binding protein
[General function prediction only]; Region: COG1611"
/db_xref="CDD:224527"
gene complement(442624..442971)
/locus_tag="CTDLC_0388"
/db_xref="GeneID:12387876"
CDS complement(442624..442971)
/locus_tag="CTDLC_0388"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812319.1"
/db_xref="GI:385244475"
/db_xref="GeneID:12387876"
/translation="MRFLLKLLSKEKENILLEGFWVLEVRVTTKARENRVVCLEDGIL
RVRVTEVPEKGKANDAVVALLANFLSIPKSDVTLIAGEASRRKKVLLPRSIKAFLLEQ
FPSESSSTTGKKS"
misc_feature complement(442639..442926)
/locus_tag="CTDLC_0388"
/note="hypothetical protein; Validated; Region: PRK00647"
/db_xref="CDD:100624"
gene 443153..444379
/locus_tag="CTDLC_0389"
/db_xref="GeneID:12387877"
CDS 443153..444379
/locus_tag="CTDLC_0389"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812320.1"
/db_xref="GI:385244476"
/db_xref="GeneID:12387877"
/translation="MMKPLRFGYFFCAIYFTLLQAAFAKEPNSCPDCQNNWKEVTHTD
QLPENIIHADDACYHSGYVQALIDMHFLDSCCQVIVENQTAYLFSLPTDDVTRNAIIN
LIKDLPFIHSVEICQASYQTCHHQGPHGKTSLPEQRSFCTKVCGKEAIWLPQNTILFS
PLVADPRQATNSAGIRFNDEVLGKRVGSATFGGDFIFLRLFDISRFHGDMDIGLQGAV
FSVFDLDHPEACMVNSDFFVAALCNFAVNKWSYRFRLWHLSSHLGDEFILANQLPPKK
RYNRSDEAVDFFASFRYTPQIRVYGGIGYIISRDLTFPEDPLYFEGGIELRPFGLRED
NLHAQPVFAMHFRFWEEHDFSIDQTYIVGMEWSKFQDVGRKVRAVLEYHQGFSHEGQF
VREECDYYGFRLSYGF"
misc_feature 443360..444376
/locus_tag="CTDLC_0389"
/note="Protein of unknown function (DUF1207); Region:
DUF1207; pfam06727"
/db_xref="CDD:148370"
gene 444451..445671
/gene="aspC"
/locus_tag="CTDLC_0390"
/db_xref="GeneID:12387878"
CDS 444451..445671
/gene="aspC"
/locus_tag="CTDLC_0390"
/EC_number="2.6.1.1"
/codon_start=1
/transl_table=11
/product="Aspartate aminotransferase"
/protein_id="YP_005812321.1"
/db_xref="GI:385244477"
/db_xref="GeneID:12387878"
/translation="MTLPCFMDFRWFMKRNPHFVSLTKNYLFADLQKRVAQFRLENPQ
HTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYR
GFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPC
LQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS
TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQ
DWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATGFEVFGG
EHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDIL
AACERLQMAPALQS"
misc_feature 444487..445656
/gene="aspC"
/locus_tag="CTDLC_0390"
/note="LL-diaminopimelate aminotransferase; Region:
DAPAT_plant; TIGR03542"
/db_xref="CDD:163316"
misc_feature 444592..445647
/gene="aspC"
/locus_tag="CTDLC_0390"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature order(444793..444801,444868..444870,445006..445008,
445099..445101,445183..445185,445189..445194,
445216..445218)
/gene="aspC"
/locus_tag="CTDLC_0390"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature order(444802..444804,444898..444900,445078..445080,
445210..445218,445327..445329,445336..445338)
/gene="aspC"
/locus_tag="CTDLC_0390"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature 445192..445194
/gene="aspC"
/locus_tag="CTDLC_0390"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 445679..446686
/locus_tag="CTDLC_0391"
/db_xref="GeneID:12387879"
CDS 445679..446686
/locus_tag="CTDLC_0391"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_005812322.1"
/db_xref="GI:385244478"
/db_xref="GeneID:12387879"
/translation="MLLRKFCGYLFCSSLVCSFISVIVVSFRSEPITPSVAIFSSFSH
NSLSECIESCQKELTSFGNMPTISLFNSEDNVVKARKIARTLHKDPNVVMIITLGPIA
TKVMSQIETQKPIIYAVVPAGEALRFPKEQVNIYGVNDSVDTNQCCFAIHAVTNNANS
LVYLQPHEPFPSSLQEEITNKLRASGIKVTELPISAANMSSRIQFIAENRPSAVFFPL
SSLSEKMGTTLIKSILKENIPLITDDSSLVMEGACAACSVDYKLSGKQIACIVRYLLS
KKNNEEHLNQISAEPILSKITFNEEIIRFLGLPFNVAPAHQFISFHSADNTGLVTLQI
P"
misc_feature 445781..446644
/locus_tag="CTDLC_0391"
/note="ABC transporter substrate binding protein; Region:
ABC_sub_bind; pfam04392"
/db_xref="CDD:202997"
gene complement(446692..447825)
/gene="yprS"
/locus_tag="CTDLC_0392"
/db_xref="GeneID:12387880"
CDS complement(446692..447825)
/gene="yprS"
/locus_tag="CTDLC_0392"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812323.1"
/db_xref="GI:385244479"
/db_xref="GeneID:12387880"
/translation="MSSIQGTSGSSPERLPNSREDEGMNPEGVTPSGQTISFSAVGKS
TSAEDIQQLALPIIQSDAMASSPSVGGAVGEVEVAEIIADVMEKNDANVQKLDEDMEA
LLQAISSSEEQLESPGVRNKSALKGTNRSNSHREEIARNQRLRSLSVRHGLAYNRHSL
RRLARGIRHHAGLVTASFATLHKTLRAVPQEDLKSILGKDSDTVLARLHKLGLEVNEK
GEWRLRANGEVGSINQSICNLARSAERLHDDGPLSINDQASEEEVTACCSAGRRACQF
LQEHLMGALRAIYYQILRFFHWISRRVEVEPEDTDYYMRPGIFINPYASYLSSSPSVE
DPRSLRDRLRDGGALSGEDTLFSMPQDESLDSESVSDDDRGFQ"
gene 448026..449771
/gene="proS"
/locus_tag="CTDLC_0393"
/db_xref="GeneID:12387881"
CDS 448026..449771
/gene="proS"
/locus_tag="CTDLC_0393"
/EC_number="6.1.1.15"
/codon_start=1
/transl_table=11
/product="prolyl-tRNA synthetase"
/protein_id="YP_005812324.1"
/db_xref="GI:385244480"
/db_xref="GeneID:12387881"
/translation="MRMSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTP
LFQRVILKMTEIIREELNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRE
NKAMCLAPTHEEVVSEFVAQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLME
DSYTFSDSPEQMEEQYAKLRLAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSL
GEDTICVSGSYGANVEAAQAIPPSYVYDSNLLPVEEVATPNIRTIEDLEVFFNTPKHK
ILKTLVVKTCQKDSEKFFAICIRGDRQINLTKVASFLQVDDCELASEEEILKHLHVEK
GFIGPLYCPIPCYADETTRPMTNFICANNQKDVHCKHVNWGRDIPLPAFGDFLLAEAG
DLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQLCWMGTYGIGVGR
TLAACIEQLADNKGLVWPLAVAPFSITILYNGGDTEGEATALQLYQSLNTEGFEPLLD
DRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESRSGEKCNVSPENLLDWCSKN
LPCHTRKIPPLREQN"
misc_feature 448026..449726
/gene="proS"
/locus_tag="CTDLC_0393"
/note="prolyl-tRNA synthetase; Provisional; Region:
PRK09194"
/db_xref="CDD:236405"
misc_feature 448074..>448679
/gene="proS"
/locus_tag="CTDLC_0393"
/note="Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is responsible
for the attachment of proline to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ProRS_core_prok;
cd00779"
/db_xref="CDD:238402"
misc_feature order(448122..448127,448146..448157,448176..448178,
448227..448235,448239..448244,448308..448310,
448314..448328,448380..448382,448440..448442,
448491..448493)
/gene="proS"
/locus_tag="CTDLC_0393"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238402"
misc_feature 448221..448244
/gene="proS"
/locus_tag="CTDLC_0393"
/note="motif 1; other site"
/db_xref="CDD:238402"
misc_feature order(448356..448358,448362..448364,448449..448451,
448455..448457,448479..448487,448494..448496,
448500..448502,448506..448508)
/gene="proS"
/locus_tag="CTDLC_0393"
/note="active site"
/db_xref="CDD:238402"
misc_feature 448446..448457
/gene="proS"
/locus_tag="CTDLC_0393"
/note="motif 2; other site"
/db_xref="CDD:238402"
misc_feature 448701..449183
/gene="proS"
/locus_tag="CTDLC_0393"
/note="INS is an amino acid-editing domain inserted (INS)
into the bacterial class II prolyl-tRNA synthetase (ProRS)
however, this CD is not exclusively bacterial. It is also
found at the N-terminus of the eukaryotic/archaea-like
ProRS's of yeasts and...; Region: ProRS-INS; cd04334"
/db_xref="CDD:239826"
misc_feature order(448860..448862,449028..449033,449106..449108)
/gene="proS"
/locus_tag="CTDLC_0393"
/note="putative deacylase active site [active]"
/db_xref="CDD:239826"
misc_feature <449226..449399
/gene="proS"
/locus_tag="CTDLC_0393"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it...; Region: class_II_aaRS-like_core;
cl00268"
/db_xref="CDD:241739"
misc_feature order(449247..449252,449262..449264,449352..449357,
449361..449366,449373..449375)
/gene="proS"
/locus_tag="CTDLC_0393"
/note="active site"
/db_xref="CDD:238391"
misc_feature order(449364..449366,449373..449375)
/gene="proS"
/locus_tag="CTDLC_0393"
/note="motif 3; other site"
/db_xref="CDD:238391"
misc_feature 449442..449714
/gene="proS"
/locus_tag="CTDLC_0393"
/note="ProRS Prolyl-anticodon binding domain, short
version found predominantly in bacteria. ProRS belongs to
class II aminoacyl-tRNA synthetases (aaRS). This alignment
contains the anticodon binding domain, which is
responsible for specificity in tRNA-binding; Region:
ProRS_anticodon_short; cd00861"
/db_xref="CDD:238438"
misc_feature order(449466..449468,449580..449582,449598..449600,
449622..449624,449652..449654,449658..449660)
/gene="proS"
/locus_tag="CTDLC_0393"
/note="anticodon binding site; other site"
/db_xref="CDD:238438"
gene 449840..451018
/gene="hrcA"
/locus_tag="CTDLC_0394"
/db_xref="GeneID:12387882"
CDS 449840..451018
/gene="hrcA"
/locus_tag="CTDLC_0394"
/note="protein HrcA"
/codon_start=1
/transl_table=11
/product="Heat-inducible transcription repressor"
/protein_id="YP_005812325.1"
/db_xref="GI:385244481"
/db_xref="GeneID:12387882"
/translation="MENRIEMSQLRASKKDSKISYVLLMATKLYLEGGQPVGSKLLKE
TYCSDLSSATIRNYFAQLETDGFLRKNHISGGRIPTDLAFRYYADHNAPFLEQEEILA
IQQKLTELPEYSKNIVKDLQKASEVLSDILQLPVCFSSPRFESDSVINIQLVAIDDQR
VVFVLSTEFGQVFTDVLWLPEQLPENSLKRIEGFLQNYLRKQPSDSLLSQKEEDLGMV
LYNEVVVRYLTRYCHFSEEDLYQTGLSRLLKYETFKDPETLAQGLAFFENRKHMCQLL
NTYLHKETPTAFIGRELTDIVGNTDPSCAVITIPYYMDRTPLGAFGVLGPMNLPYQQV
FGTLSLFTERLKVILTQSFYKFKLSFRRPCPTDPRCSQRPAELTRSSSIKLLPAKELS
"
misc_feature 449873..450904
/gene="hrcA"
/locus_tag="CTDLC_0394"
/note="Transcriptional regulator of heat shock gene
[Transcription]; Region: HrcA; COG1420"
/db_xref="CDD:224338"
gene 451015..451587
/gene="grpE"
/locus_tag="CTDLC_0395"
/db_xref="GeneID:12387883"
CDS 451015..451587
/gene="grpE"
/locus_tag="CTDLC_0395"
/codon_start=1
/transl_table=11
/product="Grpe"
/protein_id="YP_005812326.1"
/db_xref="GI:385244482"
/db_xref="GeneID:12387883"
/translation="MTETPNTSSEEIQTSEPSPDNELQVLQQENANLKAELQEQNDRY
LMALAEAENSRKRLQKERTEMMQYAVENALMDFLPPIESMEKALGFASQTSEEVKNWA
IGFQMILQQFKQIFEEKGVVEYSSKGELFNPYLHEAVEIEETTTIPEGTILEEFTKGY
KIGDRPIRVAKVKVAKLPAKGNSDSNEEKE"
misc_feature 451045..451518
/gene="grpE"
/locus_tag="CTDLC_0395"
/note="GrpE; Region: GrpE; pfam01025"
/db_xref="CDD:216249"
misc_feature 451123..451518
/gene="grpE"
/locus_tag="CTDLC_0395"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cd00446"
/db_xref="CDD:238252"
misc_feature order(451129..451134,451141..451146,451153..451155,
451165..451167,451174..451179,451219..451221,
451231..451233,451240..451242,451261..451263,
451273..451275,451327..451329,451336..451338,
451369..451371)
/gene="grpE"
/locus_tag="CTDLC_0395"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238252"
misc_feature order(451180..451182,451411..451413,451420..451434,
451480..451482,451507..451509)
/gene="grpE"
/locus_tag="CTDLC_0395"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:238252"
gene 451604..453595
/gene="dnaK"
/locus_tag="CTDLC_0396"
/db_xref="GeneID:12387884"
CDS 451604..453595
/gene="dnaK"
/locus_tag="CTDLC_0396"
/note="DnaK protein"
/codon_start=1
/transl_table=11
/product="Chaperone protein"
/protein_id="YP_005812327.1"
/db_xref="GI:385244483"
/db_xref="GeneID:12387884"
/translation="MFNMSEKRKSNKIIGIDLGTTNSCVSVMEGGQPKVIASSEGTRT
TPSIVAFKGGETLVGIPAKRQAVTNPEKTLASTKRFIGRKFSEVESEIKTVPYKVAPN
SKGDAVFDVEQKLYTPEEIGAQILMKMKETAEAYLGETVTEAVITVPAYFNDSQRAST
KDAGRIAGLDVKRIIPEPTAAALAYGIDKEGDKKIAVFDLGGGTFDISILEIGDGVFE
VLSTNGDTHLGGDDFDGVIINWMLDEFKKQEGIDLSKDNMALQRLKDAAEKAKIELSG
VSSTEINQPFITIDANGPKHLALTLTRAQFEHLASSLIERTKQPCAQALKDAKLSASD
IDDVLLVGGMSRMPAVQAVVKEIFGKEPNKGVNPDEVVAIGAAIQGGVLGGEVKDVLL
LDVIPLSLGIETLGGVMTPLVERNTTIPTQKKQIFSTAADNQPAVTIVVLQGERPMAK
DNKEIGRFDLTDIPPAPRGHPQIEVTFDIDANGILHVSAKDAASGREQKIRIEASSGL
KEDEIQQMIRDAELHKEEDKQRKEASDVKNEADGMIFRAEKAVKDYHDKIPAELVKEI
EEHIEKVRQAIKEDASTTAIKAASDELSTHMQKIGEAMQAQSASAAASSAANAQGGPN
INSEDLKKHSFSTRPPAGGSASSTDNIEDADVEIVDKPE"
misc_feature 451634..453586
/gene="dnaK"
/locus_tag="CTDLC_0396"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature 451634..452752
/gene="dnaK"
/locus_tag="CTDLC_0396"
/note="Nucleotide-binding domain of human HSPA9 and
similar proteins; Region: HSPA9-Ssq1-like_NBD; cd10234"
/db_xref="CDD:212676"
misc_feature order(451658..451669,451835..451837,452132..452134,
452204..452209,452213..452215,452291..452293,
452405..452407,452414..452416,452426..452428,
452627..452635,452639..452641)
/gene="dnaK"
/locus_tag="CTDLC_0396"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212676"
misc_feature order(451712..451714,451721..451723,451772..451774,
451784..451786,451793..451798,451802..451807,
452006..452017,452375..452377,452384..452389,
452396..452398,452450..452452,452456..452461)
/gene="dnaK"
/locus_tag="CTDLC_0396"
/note="NEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212676"
misc_feature order(452063..452068,452072..452077,452120..452125,
452129..452131,452252..452263)
/gene="dnaK"
/locus_tag="CTDLC_0396"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212676"
misc_feature 453104..453382
/gene="dnaK"
/locus_tag="CTDLC_0396"
/note="Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion]; Region: NtpF; COG2811"
/db_xref="CDD:32640"
gene 453888..455972
/gene="vacB"
/locus_tag="CTDLC_0397"
/db_xref="GeneID:12387885"
CDS 453888..455972
/gene="vacB"
/locus_tag="CTDLC_0397"
/EC_number="3.1.13.1"
/codon_start=1
/transl_table=11
/product="exoribonuclease II"
/protein_id="YP_005812328.1"
/db_xref="GI:385244484"
/db_xref="GeneID:12387885"
/translation="MGKAKNKKKFLKNRKQVLVPGTLFVHSRKGFGFVSPDQPELYPF
DIFISASDLKGALDGDHVLVALPFSLRGGEKRKGVIHKVLSRGKTVLVGTIVSLINPT
LAMVYVNTIGPEHPLKAELLPKRTYKLGDRLLLKTPVWKENYPSREPPPLAMLEFIGN
ISNAKTDFPVIKAEFSITEEFPDAVVQEASQFLQKHVTQALHSRKDLRDLLCFTIDSS
SAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKRCNSIYFPGKVIPM
LPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILRSVIRSKYRMTYDEVDEII
EKKQTHPISKTILKMAELSRIFSDIREQRGCTRLVLPSFTMSLDNLQEPVALIENKQT
AAHKLIEEFMLKANEVIAYHISHQGITMPFRTHEPPNEESLLVFQETAKAMGFTITQT
PAQEPDYQYLLQETTAGHPLEPILHSQFVRSMKTASYSTENKGHYGLCLDYYTHFTSP
IRRYVDLIVHRLLFHPLSVEEEHLEQIVRACSSQERIAAKAEGAFVNIKKARFLKKFI
EEQPATLYKAFIITASPEGISFVLPEFCHEGFIPAAKLPQAYVLQTKIGLEELPEHLR
PGAVISVQLASVTLLTQSIEWTLVEATTKAKAKRTSKKKKTESVTTKEKKKSPAKKKK
GATKTKKGSGKN"
misc_feature 453939..455831
/gene="vacB"
/locus_tag="CTDLC_0397"
/note="Exoribonuclease R [Transcription]; Region: VacB;
COG0557"
/db_xref="CDD:223631"
misc_feature 453948..454136
/gene="vacB"
/locus_tag="CTDLC_0397"
/note="Ribonuclease B OB domain; Region: OB_RNB;
pfam08206"
/db_xref="CDD:203875"
misc_feature 454497..455462
/gene="vacB"
/locus_tag="CTDLC_0397"
/note="RNB domain; Region: RNB; pfam00773"
/db_xref="CDD:216112"
gene 456228..456992
/locus_tag="CTDLC_0398"
/db_xref="GeneID:12387886"
CDS 456228..456992
/locus_tag="CTDLC_0398"
/codon_start=1
/transl_table=11
/product="Zn binding protein"
/protein_id="YP_005812329.1"
/db_xref="GI:385244485"
/db_xref="GeneID:12387886"
/translation="MHDALQSILAIQELDIKMIRLMRVKKEHQNELAKIQALKTDIRR
KVEEKEQEMEKLKDQIKGGEKRIQEISDQINKLENQQAAVKKMDEFNALTQEMTAANK
ERRTLEHQLSDLMDKQAGSEDLLISLKESLSSTENSSSAIEEEIRENIRKINEEGRSL
LSQRTQLKETTDPELFSIYERLLNNKKDRVVVPIENRVCSGCHIALTPQHENLVRKQD
HLVFCEHCSRILYWQELQSPSAEGATTKRRRRRTAV"
misc_feature 456228..456941
/locus_tag="CTDLC_0398"
/note="Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only]; Region: COG1579"
/db_xref="CDD:224495"
misc_feature 456750..456917
/locus_tag="CTDLC_0398"
/note="Putative zinc ribbon domain; Region: DUF164;
pfam02591"
/db_xref="CDD:202300"
gene complement(457415..458410)
/gene="yrbH"
/locus_tag="CTDLC_0399"
/db_xref="GeneID:12387887"
CDS complement(457415..458410)
/gene="yrbH"
/locus_tag="CTDLC_0399"
/codon_start=1
/transl_table=11
/product="Carbohydrate isomerase, KpsF/GutQ family"
/protein_id="YP_005812330.1"
/db_xref="GI:385244486"
/db_xref="GeneID:12387887"
/translation="MKVMYVPGIAENLCLDIFHKQKQVISQYFASFHYDCVHQLTEKL
LCHQGSLFFSGIGKSGCIARKLVATMQSFGEKAFFLSGDLLHGDLGVVSPGDIVCLFS
NSGETREILEWIPHLKNRPVFLVGITAAPCSSLAAFSDFVIVLPKLEELDPFNLMPTT
STTCQLLFSDLLAMTLLRCRKISLSDYGSNHPSGQIGLKANGKVKDYLYPRTEVPFCS
PLTTVAESLPTLSSYGYGCVCVVNELFELLGIFTDGDLRRGLSEYGGDILAYPLQQIM
TRNPKVISEDSDVLLSLEMMESGNPVTVLPVVDAQQQRFIVGLLHMHALARAGLL"
misc_feature complement(457781..458383)
/gene="yrbH"
/locus_tag="CTDLC_0399"
/note="Predicted sugar phosphate isomerase involved in
capsule formation [Cell envelope biogenesis, outer
membrane]; Region: GutQ; COG0794"
/db_xref="CDD:31137"
misc_feature complement(457886..458266)
/gene="yrbH"
/locus_tag="CTDLC_0399"
/note="KpsF-like protein. KpsF is an arabinose-5-phosphate
isomerase which contains SIS (Sugar ISomerase) domains.
SIS domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. KpsF catalyzes the
reversible reaction of ribulose...; Region: SIS_Kpsf;
cd05014"
/db_xref="CDD:88409"
misc_feature complement(order(458105..458107,458234..458236))
/gene="yrbH"
/locus_tag="CTDLC_0399"
/note="putative active site [active]"
/db_xref="CDD:88409"
misc_feature complement(457436..457801)
/gene="yrbH"
/locus_tag="CTDLC_0399"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:30863"
misc_feature complement(457427..457777)
/gene="yrbH"
/locus_tag="CTDLC_0399"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with KpsF/GutQ domains in the API [A5P (D-arabinose
5-phosphate) isomerase] protein. These APIs catalyze the
conversion of the pentose pathway...; Region:
CBS_pair_KpsF_GutQ_assoc; cd04604"
/db_xref="CDD:73104"
gene complement(458433..459599)
/gene="sucB_2"
/locus_tag="CTDLC_0400"
/db_xref="GeneID:12387888"
CDS complement(458433..459599)
/gene="sucB_2"
/locus_tag="CTDLC_0400"
/EC_number="2.3.1.-"
/codon_start=1
/transl_table=11
/product="lipoamide acyltransferase component (E2) of
branched-chain alpha-keto acid dehydrogenase complex"
/protein_id="YP_005812331.1"
/db_xref="GI:385244487"
/db_xref="GeneID:12387888"
/translation="MFEFRFPKIGETASGGIVVRWLKQVGDPVQKDEPLIEVSTDKIA
TELAPSQAGILEECLVQEGEEVFPGDILARLLETAAANTPVKSPVENPVREENHSVDR
EQKWFSPAVLGFAQREGLDLQELQKISGTGEGGRITRKDVEHYLSDKREPRDPICSKE
ENRIPLSPLRRAIASSLRQSSEEVPHASLVVDVDVTDLMNLISAERERFTAAHGVKLT
ITSFIIQCLAKSLEQFPLLNGSLDGDTIVLKKAINVGVAVNLNKEGVVVPVIHNCQDR
GLVSIAKVLADLSSRARSNKLDSSETKGGSVTVTNFGMTGALIGMPIIRYPEVAILGI
GTIQKRVVVRDDDSLAIRKMMCVTLTFDHRILDGIYGGEFLTALKNRLESVTMS"
misc_feature complement(458436..459599)
/gene="sucB_2"
/locus_tag="CTDLC_0400"
/note="branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed; Region: PRK11856"
/db_xref="CDD:237001"
misc_feature complement(459375..459596)
/gene="sucB_2"
/locus_tag="CTDLC_0400"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature complement(order(459456..459458,459468..459485,
459504..459506))
/gene="sucB_2"
/locus_tag="CTDLC_0400"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature complement(459474..459476)
/gene="sucB_2"
/locus_tag="CTDLC_0400"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature complement(459168..459278)
/gene="sucB_2"
/locus_tag="CTDLC_0400"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature complement(458451..459071)
/gene="sucB_2"
/locus_tag="CTDLC_0400"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:215782"
gene complement(459845..461083)
/gene="gltT"
/locus_tag="CTDLC_0401"
/db_xref="GeneID:12387889"
CDS complement(459845..461083)
/gene="gltT"
/locus_tag="CTDLC_0401"
/codon_start=1
/transl_table=11
/product="Proton/sodium-glutamate symport protein"
/protein_id="YP_005812332.1"
/db_xref="GI:385244488"
/db_xref="GeneID:12387889"
/translation="MKLWMKIFIGLIIGVVSGLILEDKAVFVKPFGDIFLNLLSMVVY
PLVFCSMVLGIASISDMKKLGRIGLRSLGLYLATTSVAIGIGLAFALFFSPGKGCDLQ
GFNAVDLASSGSSGGMNFLATFAQVFPSNPLRSFVEGNILQIIIFALFTGIAMRLAGE
AARPVERFVHGCNEIMLRMVNMIMSFAPYGVAASMAWISGNHGLTVLLQLGKFLVVYY
LACICHAILIFGGLVRLGCRSSFSKFLSSMMDAISCAVSTASSSATLPVTMRCVSKNL
GVSSEVSGFVLPLGATVNMNGTAIFQGMAAVFIAQAYNCPLSLTSLLLLVVTATFSAV
GSAGVPGGGMITLGSVLTSVGLPIQGIAVLAGIDRLRDIIGTPMNILGDAVVALYIAD
GEGEFSSSNEGEEDILPQNG"
misc_feature complement(459911..461017)
/gene="gltT"
/locus_tag="CTDLC_0401"
/note="Sodium:dicarboxylate symporter family; Region: SDF;
pfam00375"
/db_xref="CDD:215884"
misc_feature complement(459911..461011)
/gene="gltT"
/locus_tag="CTDLC_0401"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:224220"
gene complement(461080..462339)
/gene="lpxK"
/locus_tag="CTDLC_0402"
/db_xref="GeneID:12387890"
CDS complement(461080..462339)
/gene="lpxK"
/locus_tag="CTDLC_0402"
/EC_number="2.7.1.130"
/codon_start=1
/transl_table=11
/product="tetraacyldisaccharide 4'-kinase"
/protein_id="YP_005812333.1"
/db_xref="GI:385244489"
/db_xref="GeneID:12387890"
/translation="MIFNVLYAILRDTLVWKATWVKRTKSLSQPFRVVIVFAGCSFRK
NLSRAPMRFSFFSGIRDLFRHLIISATSGALSDRLGWLWAVIARVFSGSVWLRHKIAK
SPHQVQATVVSVGNIVVGGTGKTPLVLWLAQALHERGLSCAVLSRGYKGKYSKKKAFT
IVNPALHTASCVGDEPLLLAKYLPSGTVRIQKDRKTLAEKSAGDFDVLLLDDGFQYNR
LHKDVEIVLVNGSDPFGGGSFFPKGRLRDFPERLAKADYVMINGRCSPSDQRELDRLH
PEEKIVIEPQISEIVWLNQSVNMPRDHWEGLGVGVFCGLGFPKGFLAMLRDAGIHVLG
TYLLPDHVGITKQELELFCKKIILRQGVGILCTEKDSVKIGALAEEISFPVGEVRMRF
SCVCNERRMVAMLDAIEAIQKNKRVTT"
misc_feature complement(461101..462177)
/gene="lpxK"
/locus_tag="CTDLC_0402"
/note="tetraacyldisaccharide 4'-kinase; Reviewed; Region:
lpxK; PRK00652"
/db_xref="CDD:179082"
misc_feature complement(461098..462105)
/gene="lpxK"
/locus_tag="CTDLC_0402"
/note="tetraacyldisaccharide 4'-kinase; Region: lpxK;
TIGR00682"
/db_xref="CDD:161995"
gene complement(462355..463164)
/gene="yjfH"
/locus_tag="CTDLC_0403"
/db_xref="GeneID:12387891"
CDS complement(462355..463164)
/gene="yjfH"
/locus_tag="CTDLC_0403"
/EC_number="2.1.1.-"
/codon_start=1
/transl_table=11
/product="23S rRNA methyltransferase"
/protein_id="YP_005812334.1"
/db_xref="GI:385244490"
/db_xref="GeneID:12387891"
/translation="MEFIGKNNARVKSALALKRQRARNSTYFLLEGFREIHRALISGY
RCSHVFCGELIADKEIALDRELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKEL
SCQEFLGLQRKNQAPFYLIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNV
IRSSLGTVFTMPVWQASLKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGS
EKDGLSPDWLNGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQRSIRNLL"
misc_feature complement(462373..463158)
/gene="yjfH"
/locus_tag="CTDLC_0403"
/note="rRNA methylases [Translation, ribosomal structure
and biogenesis]; Region: SpoU; COG0566"
/db_xref="CDD:223640"
misc_feature complement(462862..463080)
/gene="yjfH"
/locus_tag="CTDLC_0403"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; pfam08032"
/db_xref="CDD:203842"
misc_feature complement(462421..462816)
/gene="yjfH"
/locus_tag="CTDLC_0403"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:216010"
gene complement(463152..463979)
/locus_tag="CTDLC_0404"
/db_xref="GeneID:12387892"
CDS complement(463152..463979)
/locus_tag="CTDLC_0404"
/codon_start=1
/transl_table=11
/product="N6-adenine-specific DNA methylase"
/protein_id="YP_005812335.1"
/db_xref="GI:385244491"
/db_xref="GeneID:12387892"
/translation="MMDYELLDSGDGKKLERFKDVCLIRSSATAIWPKSSPSLWGQYS
AEFVRMGEQGQWRYRNRNLKEWWITIDSVSCLLKLTPFGHVGIFPEHAGFWKDLQPSV
AKPSCRVLNLFAYTGASSIFCAQQGATVYHVDASKAAVKWAQKNVEGNAFQDKRIFWI
IEDVFSFLKKEIRRGKTYDVILLDPPTYGRGPDGETFKIDRDFFPLLELCSQLLSSSF
SHMLITSHTPGHTPEFLHCLARRALLMLPLQGWRLGENFCGEGNQRLPSGVFAQWSL"
misc_feature complement(463158..>463979)
/locus_tag="CTDLC_0404"
/note="Predicted SAM-dependent methyltransferases [General
function prediction only]; Region: COG1092"
/db_xref="CDD:224017"
misc_feature complement(<463401..463658)
/locus_tag="CTDLC_0404"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(463428..463430,463488..463496,
463575..463580,463626..463646))
/locus_tag="CTDLC_0404"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(463976..464581)
/gene="ribC"
/locus_tag="CTDLC_0405"
/db_xref="GeneID:12387893"
CDS complement(463976..464581)
/gene="ribC"
/locus_tag="CTDLC_0405"
/EC_number="2.5.1.9"
/codon_start=1
/transl_table=11
/product="riboflavin synthase subunit alpha"
/protein_id="YP_005812336.1"
/db_xref="GI:385244492"
/db_xref="GeneID:12387893"
/translation="MSMFSGIIQEVARVDLIHHLRDSMEIGVFARKLIDVVPGSSFSV
DGICLTLVKRQYELLFFDVTEETMAWTTIKDYTVGTMVNLERSVRLGDEIGGHFVSGH
VCGIGTIIAIEKSYMFFKAPANLVPYILEKGFIAIDGISLTIARVKGDIFSVSLIPET
RARTSLGYKQVGAHVNMEPDMMTKMQVDTIMRFHAEKEISK"
misc_feature complement(463979..464575)
/gene="ribC"
/locus_tag="CTDLC_0405"
/note="riboflavin synthase subunit alpha; Provisional;
Region: PRK13020"
/db_xref="CDD:183846"
misc_feature complement(464324..464569)
/gene="ribC"
/locus_tag="CTDLC_0405"
/note="Lumazine binding domain; Region: Lum_binding;
pfam00677"
/db_xref="CDD:201387"
misc_feature complement(464042..464284)
/gene="ribC"
/locus_tag="CTDLC_0405"
/note="Lumazine binding domain; Region: Lum_binding;
pfam00677"
/db_xref="CDD:201387"
gene 464968..465432
/gene="nrdR"
/locus_tag="CTDLC_0406"
/db_xref="GeneID:12387894"
CDS 464968..465432
/gene="nrdR"
/locus_tag="CTDLC_0406"
/codon_start=1
/transl_table=11
/product="Putative regulatory protein"
/protein_id="YP_005812337.1"
/db_xref="GI:385244493"
/db_xref="GeneID:12387894"
/translation="MLCPFCNHGELKVIDSRNAPESNAIKRRRECLRCSQRFTTFETV
ELTVQVLKRDGRYENFQESKLVNGLKAASSHTRIGQEQVQAIASNIKQDLLGKQNREI
STKEIGELVMKYLKKADMIAYIRFACVYRRFKDVGELMEVLLSATPDGEKQT"
misc_feature 464968..465429
/gene="nrdR"
/locus_tag="CTDLC_0406"
/note="Predicted transcriptional regulator, consists of a
Zn-ribbon and ATP-cone domains [Transcription]; Region:
COG1327"
/db_xref="CDD:224246"
misc_feature 465112..465375
/gene="nrdR"
/locus_tag="CTDLC_0406"
/note="ATP cone domain; Region: ATP-cone; pfam03477"
/db_xref="CDD:217585"
gene 465413..465820
/gene="dksA"
/locus_tag="CTDLC_0407"
/db_xref="GeneID:12387895"
CDS 465413..465820
/gene="dksA"
/locus_tag="CTDLC_0407"
/codon_start=1
/transl_table=11
/product="DnaK suppressor protein"
/protein_id="YP_005812338.1"
/db_xref="GI:385244494"
/db_xref="GeneID:12387895"
/translation="MVKNRHEKENCMPLTDEEIANFKTRLLEMKAKLSHTLEGNAQEV
KKPNEATGYSQHQADQGTDTFDRTISLEVTTKEYKLLRQIDRALEKIEEASYGICDVS
GEEIPLARLMAIPYATMTVKSQEKFEKGLLSGN"
misc_feature 465452..465802
/gene="dksA"
/locus_tag="CTDLC_0407"
/note="DnaK suppressor protein [Signal transduction
mechanisms]; Region: DksA; COG1734"
/db_xref="CDD:31920"
gene 465826..466329
/gene="lspA"
/locus_tag="CTDLC_0408"
/db_xref="GeneID:12387896"
CDS 465826..466329
/gene="lspA"
/locus_tag="CTDLC_0408"
/EC_number="3.4.23.36"
/codon_start=1
/transl_table=11
/product="lipoprotein signal peptidase"
/protein_id="YP_005812339.1"
/db_xref="GI:385244495"
/db_xref="GeneID:12387896"
/translation="MPTRSLPTFLTLLLLASIDWVSKLVVLLKSCQLSPHSSAFLYSY
VWGHFSFLIIPSFNEGAAFGLFTQYKIPLLIFRVCVILGLALFLRIKYKSLHRRTRVA
LTLILAGALGNVGDILLYGKVVDFLSLSYYSWRFPSFNLADAFISIGTLLLIGHLYFT
KESKKYF"
misc_feature 465877..466320
/gene="lspA"
/locus_tag="CTDLC_0408"
/note="Lipoprotein signal peptidase [Cell envelope
biogenesis, outer membrane / Intracellular trafficking and
secretion]; Region: LspA; COG0597"
/db_xref="CDD:223670"
gene 466431..467792
/locus_tag="CTDLC_0409"
/db_xref="GeneID:12387897"
CDS 466431..467792
/locus_tag="CTDLC_0409"
/codon_start=1
/transl_table=11
/product="Na(+)-linked D-alanine glycine permease"
/protein_id="YP_005812340.1"
/db_xref="GI:385244496"
/db_xref="GeneID:12387897"
/translation="MSAFLSFLTAFDDFIWSYIAFVLILLLGVLFTCKSKFAQFTQLP
AFFKLFYHFSKEASSKKENQKKGVHPLKVFFASAGGNIGIGNVVGIVTAASVGGPGAL
FWVWIAGILGSIVKYSEVYLGIKFRQSDANNVYHGGPMFFLDKAYRTRIVSVIVAVLL
CIYGVEIYQFSIIANTLASCWDVPKLMAIASLLFLVMYAVQGGLQRIGKICSLVLPFF
MLVYCGMAFYILIQEIHTLPALFSSIFRSAFTGHGAIGGFAGCTVASTIRQGLSRAAY
SGDIGIGFDSIIQSETSATNPQTQAQLSIVGVIVDNLVCTLSLLIVLASGVWHRAGLE
GSEIVEQALSFYFPYIRVFLPAFLFATGYTTIISYFLVGKKCANFICGNKGSKFYTVY
GIIALPAFCFLPQDTALLVMSVSGALLLCLNLLGVFLMRKELIFPKKEAETLEVSEST
LSS"
misc_feature 466431..467747
/locus_tag="CTDLC_0409"
/note="Na+/alanine symporter [Amino acid transport and
metabolism]; Region: AlsT; COG1115"
/db_xref="CDD:224040"
misc_feature 466476..467747
/locus_tag="CTDLC_0409"
/note="amino acid carrier protein; Region: agcS;
TIGR00835"
/db_xref="CDD:233144"
gene 468007..469284
/gene="pcnB_1"
/locus_tag="CTDLC_0410"
/db_xref="GeneID:12387898"
CDS 468007..469284
/gene="pcnB_1"
/locus_tag="CTDLC_0410"
/EC_number="2.7.7.19"
/EC_number="2.7.7.72"
/note="tRNA-nucleotidyltransferase"
/codon_start=1
/transl_table=11
/product="Poly(A) polymerase"
/protein_id="YP_005812341.1"
/db_xref="GI:385244497"
/db_xref="GeneID:12387898"
/translation="MMACNQELLSPRGLDLLSKNSHSNLTPTIFYPSDHNIDLQSFST
HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGK
RFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS
AEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEAL
QESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAFSLSKTL
QDQTFACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTMTIQSIFDY
IRNFLTEFFADSFTSCSKKNFILTTLLLQMQYRLTPLNAMKKEKKSFFNRRLLRHAYF
REALYLLEIRSKVYPKVEATYGEWLKHYELASE"
misc_feature 468091..469281
/gene="pcnB_1"
/locus_tag="CTDLC_0410"
/note="poly(A) polymerase; Region: pcnB; TIGR01942"
/db_xref="CDD:130997"
misc_feature 468142..468534
/gene="pcnB_1"
/locus_tag="CTDLC_0410"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature order(468196..468201,468208..468213,468238..468240,
468244..468246,468316..468318,468355..468357,
468370..468372,468445..468456,468463..468465)
/gene="pcnB_1"
/locus_tag="CTDLC_0410"
/note="active site"
/db_xref="CDD:143388"
misc_feature order(468196..468201,468208..468210,468238..468240,
468244..468246,468445..468453,468463..468465)
/gene="pcnB_1"
/locus_tag="CTDLC_0410"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature order(468238..468240,468244..468246,468355..468357)
/gene="pcnB_1"
/locus_tag="CTDLC_0410"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature 468628..468816
/gene="pcnB_1"
/locus_tag="CTDLC_0410"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:221674"
gene 469345..471168
/gene="lpxB"
/locus_tag="CTDLC_0411"
/db_xref="GeneID:12387899"
CDS 469345..471168
/gene="lpxB"
/locus_tag="CTDLC_0411"
/EC_number="2.4.1.182"
/codon_start=1
/transl_table=11
/product="Lipid-A-disaccharide synthase"
/protein_id="YP_005812342.1"
/db_xref="GI:385244498"
/db_xref="GeneID:12387899"
/translation="MFPQKITLWLYPLGLFANLFFGTAFCVQWSLTRKKGYSVVPKIF
WYLSGTGAVFMICHGFIQSQYPIALLHSFNLIIYFRNLNIASLNPLPVSKIASLLVSV
ATAITVSFAIGTRYLPHMTWMASPNILHLNLPEASLSWQLIGCIGLTIFSLRFFIQWF
YLEYKNQSALPAPFWKASLLGGSICLLYFLRTGDLVNVLCYGCGLFPSLANLRIASRE
AFRKPFSNSCFISAGEHSGDTLGGNLLKEMHAKYPDIHCFGVGGPQMRAQNFHALFAM
EKFQVSGFWEVLLALPKLWYRYQLLYRNILKTNPRTVICIDFPDFHFLLIKKLRSRGY
KGKIVHYVCPSIWAWRPSRKTVLEKYLDLLLLILPFEQNLFKDSALRTVYLGHPLSET
IKSFSPNLNWKDQLHLPTDKPFIAAFPGSRRSDILRNLTIQVQAFQASSLASTHHLLV
SSANPEYDHLILEVLQQNRCLHSHIVPSQFRYELMRECDFALAKCGTIVLETALNLTP
TIVTCQLRPLDTFLAKYIFNIILPAYSLPNIILGRTIFPEFIGGKKDFQYEDVAAALN
ILKTSQAQEKQKDSCRDVYQAINESASSMKECLSLIFETAS"
misc_feature 469345..471165
/gene="lpxB"
/locus_tag="CTDLC_0411"
/note="lipid-A-disaccharide synthase; Reviewed; Region:
lpxB; PRK01021"
/db_xref="CDD:167141"
misc_feature 469381..469596
/gene="lpxB"
/locus_tag="CTDLC_0411"
/note="Lipid A Biosynthesis N-terminal domain; Region:
LAB_N; pfam07578"
/db_xref="CDD:148926"
misc_feature 469687..470025
/gene="lpxB"
/locus_tag="CTDLC_0411"
/note="Predicted membrane protein [Function unknown];
Region: COG3952"
/db_xref="CDD:226461"
misc_feature 470029..470994
/gene="lpxB"
/locus_tag="CTDLC_0411"
/note="ipid-A-disaccharide synthase; Provisional; Region:
PRK14089"
/db_xref="CDD:237606"
gene 471254..474202
/gene="pmpA"
/locus_tag="CTDLC_0412"
/db_xref="GeneID:12387900"
CDS 471254..474202
/gene="pmpA"
/locus_tag="CTDLC_0412"
/codon_start=1
/transl_table=11
/product="Polymorphic outer membrane protein"
/protein_id="YP_005812343.1"
/db_xref="GI:385244499"
/db_xref="GeneID:12387900"
/translation="MFITKELMNRVIEIHAHYDQRQLSQSPNTNFLVHHPYLTLIPKF
LLGALIVYAPYSFAEMELAISGHKQGKDRDTFTMISSCPEGTNYIINRKLILSDFSLL
NKVSSGGAFRNLAGKISFLGKNSSASIHFKHININGFGAGVFSESSIEFTDLRKLVAF
GSESTGGIFTAKEDISFKNNHHIAFRNNITKGNGGVIQLQGDMKGSVSFVDQRGAIIF
TNNQAVTSSSMKHSGRGGAISGDFAGSRILFLNNQQITFEGNSAVHGGAIYNKNGLVE
FLGNAGPLAFKENTTIANGGAIYTSNFKANQQTSPILFSQNHANKKGGAIYAQYVNLE
QNQDTIRFEKNTAKEGGGAITSSQCSITAHNTIIFSDNAAGDLGGGAILLEGKKPSLT
LIAHSGNIAFSGNTMLHITKKASLDRHNSILIKEAPYKIQLAANKNHSIHFFDPVMAL
SASSSPIQINAPEYETPFFSPKGMIVFSGANLLDDAREDVANRTSIFNQPVHLYNGTL
SIENGAHLIVQSFKQTGGRISLSPGSSLALYTMNSFFHGNISSKEPLEINGLSFGVDI
SPSNLQAEIRAGNAPLRLSGSPSIHDPEGLFYENRDTAASPYQMEILLTSDKIVDISK
FTTDSLVTNKQSGFQGAWHFSWQPNTINNTKQKILRASWLPTGEYVLESNRVGRAVPN
SLWSTFLLLQTASHNLGDHLCNNRSLIPTSYFGVLIGGTGAEMSTHSSEEESFISRLG
ATGTSIIRLTPSLTLSGGGSHMFGDSFVADLPEHITSEGIVQNVGLTHVWGPLTVNST
LCAALDHNAMVRICSKKDHTYGKWDTFGMRGTLGASYTFLEYDQTMRVFSFANIEATN
ILQRAFTETGYNPRSFSKTKLLNIAIPIGIGYEFCLGNSSFALLGKGSIGYSRDIKRE
NPSTLAHLAMNDFAWTTNGCSVPTSAHTLANQLILRYKACSLYITAYTINREGKNLSN
SLSCGGYVGF"
misc_feature 472259..472339
/gene="pmpA"
/locus_tag="CTDLC_0412"
/note="Chlamydial polymorphic outer membrane protein
repeat; Region: POMP_repeat; TIGR01376"
/db_xref="CDD:211646"
misc_feature 472769..473248
/gene="pmpA"
/locus_tag="CTDLC_0412"
/note="Chlamydia polymorphic membrane protein middle
domain; Region: ChlamPMP_M; pfam07548"
/db_xref="CDD:116167"
misc_feature 473381..474109
/gene="pmpA"
/locus_tag="CTDLC_0412"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 474332..479596
/gene="pmpB"
/locus_tag="CTDLC_0413"
/db_xref="GeneID:12387901"
CDS 474332..479596
/gene="pmpB"
/locus_tag="CTDLC_0413"
/codon_start=1
/transl_table=11
/product="Polymorphic outer membrane protein"
/protein_id="YP_005812344.1"
/db_xref="GI:385244500"
/db_xref="GeneID:12387901"
/translation="MSSMKWLSATAVFAAVLPSVSGFCFPEPKELNFSRVGTSSSTTF
TETVGEAGAEYIVSGNASFTKFTNIPTTDTTTPTNSNSSSSNGETASVSEDSDSTTTT
PDPKGGGAFYNAHSGVLSFMTRSGTEGSLTLSEIKITGEGGAIFSQGELLFTDLTGLT
IQNNLSQLSGGAIFGESTISLSGITKATFSSNSAEVPAPVKKPTEPKAQTASETSGSS
SSSGNDSVSSPSSSRAEPAAANLQSHFICATATPAAQTDTETSTPSHKPGSGGAIYAK
GDLTIADSQEVLFSINKATKDGGAIFAEKDVSFENITSLKVQTNGAEEKGGAIYAKGD
LSIQSSKQSLFNSNYSKQGGGALYVEGDINFQDLEEIRIKYNKAGTFETKKITLPKAQ
ASAGNADAWASSSPQSGSGATTVSNSGDSSSGSDSDTSETVPATAKGGGLYTDKNLSI
TNITGIIEIANNKATDVGGGAYVKGTLTCENSHRLQFLKNSSDKQGGGIYGEDNITLS
NLTGKTLFQENTAKEEGGGLFIKGTDKALTMTGLDSFCLINNTSEKHGGGAFVTKEIS
QTYTSDVETIPGITPVHGETVITGNKSTGGNGGGVCTKRLALSNLQSISISGNSAAEN
GGGAHTCPDSFPTADTAEQPAAASAATSTPESAPVVSTALSTPSSSTVSSLTLLAASS
QASPATSNKETQDPNADTDLLIDYVVDTTISKNTAKKGGGIYAKKAKMSRIDQLNISE
NSATEIGGGICCKESLELDALVSLSVTENLVGKEGGGLHAKTVNISNLKSGFSFSNNK
ANSSSTGVATTASAPAAAAASLQAAAAAVPSSPATPTYSGVVGGAIYGEKVTFSQCSG
TCQFSGNQAIDNNPSQSSLNVQGGAIYAKTSLSIGSSDAGTSYIFSGNSVSTGKSQTT
GQIAGGAIYSPTVTLNCPATFSNNTASMATPKTSSEDGSSGNSIKDTIGGAIAGTAIT
LSGVSRFSGNTADLGAAIGTLANANTPSATSGSQNSITEKITLENGSFIFERNQANKR
GAIYSPSVSIKGNNITFNQNTSTHDGSAIYFTKDATIESLGSVLFTGNNVTATQASSA
TSGQNTNTANYGAAIFGDPGTTQSSQTDAILTLLASSGNITFSNNSLQNNQGDTPASK
FCSIAGYVKLSLQAAKGKTISFFDCVHTSTKKIGSTQNVYETLDINKEENSNPYTGTI
VFSSELHENKSYIPQNAILHNGTLVLKEKTELHVVSFEQKEGSKLIMKPGAVLSNQNI
ANGALVINGLTIDLSSMGTPQAGEIFSPPELRIVATTSSASGGSGVSSSIPTNPKRIS
AAAPSGSAATTPTMSENKVFLTGDLTLIDPNGNFYQNPMLGSDLDVPLIKLPTNTSDV
QVYDLTLSGDLFPQKGYMGTWTLDSNPQTGKLQARWTFDTYRRWVYIPRDNHFYANSI
LGSQNSMIVVKQGLINNMLNNARFDDIAYNNFWVSGVGTFLAQQGTPLSEEFSYYSRG
TSVAIDAKPRQDFILGAAFSKMVGKTKAIKKMHNYFHKGSEYSYQASVYGGKFLYFLL
NKQHGWALPFLIQGVVSYGHIKHDTTTLYPSIHERNKGDWEDLGWLADLRISMDLKEP
SKDSSKRITVYGELEYSSIRQKQFTEIDYDPRHFDDCAYRNLSLPVGCAVEGAIMNCN
ILMYNKLALAYMPSIYRNNPVCKYRVLSSNEAGQVICGVPTRTSARAEYSTQLYLGPF
WTLYGNYTIDVGMYTLSQMTSCGARMIF"
misc_feature 478007..478579
/gene="pmpB"
/locus_tag="CTDLC_0413"
/note="Chlamydia polymorphic membrane protein middle
domain; Region: ChlamPMP_M; pfam07548"
/db_xref="CDD:116167"
misc_feature 478721..479554
/gene="pmpB"
/locus_tag="CTDLC_0413"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 479773..485085
/gene="pmpC"
/locus_tag="CTDLC_0414"
/db_xref="GeneID:12387902"
CDS 479773..485085
/gene="pmpC"
/locus_tag="CTDLC_0414"
/codon_start=1
/transl_table=11
/product="Polymorphic outer membrane protein"
/protein_id="YP_005812345.1"
/db_xref="GI:385244501"
/db_xref="GeneID:12387902"
/translation="MKFMSATAVFAAALSSVTEASSIQDQIKNTDCNVSKLGYSTSQA
FTDMMLADNTEYRAADSVSFYDFSTSSRLPRKHLSSSSEASPTTEGVSSSSSGETDEK
TEEELDNGGIIYAREKLTISESQDSLSNQSIELHDNSIFFGEGEVIFDHRVALKNGGA
IYGEKEVVFENIKSLLVEVNIAVEKGGSVYAKERVSLENVTEATFSSNGGEQGGGGIY
SEQDMLISDCNNVHFQGNAAGATAVKQCLDEEMIVLLAECVDSLSEDTLDSTPETEQT
ESNGNQDGSSETEDTQVSESPESTPSPDDVLGKGGGIYTEKSLTITGITGTIDFVSNI
ATDSGAGVFTKENLSCTNTNSLQFLKNSAGQHGGGAYVTQTMSVTNTTSESITTPPLI
GEVIFSENTAKGHGGGICTNKLSLSNLKTVTLTKNSAKESGGAIFTDLASIPITDTPE
SSTPSSSSPASTPEVVASAKINRFFASTAKPAAPSLTEAESDQTDQTETSDTNSDIDV
SIENILNVAINQNTSAKKGGAIYGKKAKLSRINNLELSGNSSQDVGGGLCLTESVEFD
AIGSLLSHYNSAAKEGGAIHSKTVTLSNLKSTFTFADNTVKAIVESTPEAPEEIPPVE
GEESTATEDPNSNTEGSSANTNLEGSQGDTADTGTGDVNNESQDTSDTGNAESEEQLQ
DSTQSNEENTLPNSNIDQSNENTDESSDSHTEEITDESVSSSSESGSSTPQDGGAASS
GAPSGDQSISANACLAKSYAASTDSSPVSNSSGSEEPVTSSSDSDVTASSDNPDSSSS
GDSAGDSEEPTEPEAGSTTETLTLIGGGAIYGETVKIENFSGQGIFSGNKAIDNTTEG
SSSKSDVLGGAVYAKTLFNLDSGSSRRTVTFSGNTVSSQSTTGQVAGGAIYSPTVTIA
TPVVFSKNSATNNANNTTDTQRKDTFGGAIGATSAVSLSGGAHFLENVADLGSAIGLV
PGTQNTETVKLESGSYYFEKNKALKRATIYAPVVSIKAYTATFNQNRSLEEGSAIYFT
KEASIESLGSVLFTGNLVTLTLSTTTEGTPATTSGDVTKYGAAIFGQIASSNGSQTDN
LPLKLIASGGNICFRNNEYRPTSSDTGTSTFCSIAGDVKLTMQAAKGKTISFFDAIRT
STKKTGTQATAYDTLDINKSEDSETVNSAFTGTILFSSELHENKSYIPQNVVLHSGSL
VLKPNTELHVISFEQKEGSSLVMTPGSVLSNQTVADGALVINNMTIDLSSVEKNGIAE
GNIFTPPELRIIDTTTGGSGGTPSTDSESNQNSDDTEEQNNNDASNQGESANGSSSPA
VAAAHTSRTRNFAAAATATPTTTPTATTTTSNQVILGGEIKLIDPNGTFFQNPALRSD
QQISLLVLPTDSSKMQAQKIVLTGDIAPQKGYTGTLTLDPDQLQNGTISVLWKFDSYR
QWAYVPRDNHFYANSILGSQMLMVTVKQGLLNDKMNLARFEEVSYNNLWISGLGTMLS
QVGTPTSEEFTYYSRGASVALDAKPAHDVIVGAAFSKMIGKTKSLKRENNYTHKGSEY
SYQASVYGGKPFHFVINKKTEKSLPLLLQGVISYGYIKHDTVTHYPTIRERNKGEWED
LGWLTALRVSSVLRTPAQGDTKRITVYGELEYSSIRQKQFTETEYDPRYFDNCTYRNL
AIPMGLAFEGELSGNDILMYNRFSVAYMLSIYRNSPTCKYQVLSSGEGGEIICGVPTR
NSARGEYSTQLYLGPLWTLYGSYTIEADAHTLAHMMNCGARMTF"
misc_feature 483376..>483537
/gene="pmpC"
/locus_tag="CTDLC_0414"
/note="Chlamydia polymorphic membrane protein middle
domain; Region: ChlamPMP_M; pfam07548"
/db_xref="CDD:116167"
misc_feature <483823..484068
/gene="pmpC"
/locus_tag="CTDLC_0414"
/note="Chlamydia polymorphic membrane protein middle
domain; Region: ChlamPMP_M; pfam07548"
/db_xref="CDD:116167"
misc_feature 484204..485025
/gene="pmpC"
/locus_tag="CTDLC_0414"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene complement(485243..485329)
/locus_tag="CTDLC_r027"
/db_xref="GeneID:12387903"
tRNA complement(485243..485329)
/locus_tag="CTDLC_r027"
/product="tRNA-Ser"
/db_xref="GeneID:12387903"
gene 485638..486468
/gene="yebL"
/locus_tag="CTDLC_0415"
/db_xref="GeneID:12387904"
CDS 485638..486468
/gene="yebL"
/locus_tag="CTDLC_0415"
/codon_start=1
/transl_table=11
/product="Metal transport system, metal-binding protein"
/protein_id="YP_005812346.1"
/db_xref="GI:385244502"
/db_xref="GeneID:12387904"
/translation="MRLLFLLLFSLGITCSYGDEVSTRKQILVSIVPYKFLVEQIAGD
TCQVFSIVMDNHDPHNYELSPKYIEKIRQVELWFKIGEGFEKTCERIISCKQVDLAAN
IDKITNGACCQRFLSFDTHTWLSPKNLKIQIQAITEALVETAPEHETLYRKNCSLLQS
QLDLLDQKISSIVSSTSQRNVLVTHGAFAYFCRDYGFIQHTIERANHSELSPKDVVRV
ERTIRDHNLHSVILLKHAGKRSSAALVRKFNMTPILLDPYAEDVFNNLLAIATAFANL
"
misc_feature 485713..486462
/gene="yebL"
/locus_tag="CTDLC_0415"
/note="Helical backbone metal receptor (TroA-like domain).
These proteins have been shown to function in the ABC
transport of ferric siderophores and metal ions such as
Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site
is formed in the interface between...; Region: TroA-like;
cl00262"
/db_xref="CDD:241735"
misc_feature 485716..486456
/gene="yebL"
/locus_tag="CTDLC_0415"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:216419"
misc_feature order(485902..485907,485914..485916,486049..486051)
/gene="yebL"
/locus_tag="CTDLC_0415"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:238347"
gene 486465..487175
/locus_tag="CTDLC_0416"
/db_xref="GeneID:12387905"
CDS 486465..487175
/locus_tag="CTDLC_0416"
/codon_start=1
/transl_table=11
/product="Metal transport system ATP-binding protein"
/protein_id="YP_005812347.1"
/db_xref="GI:385244503"
/db_xref="GeneID:12387905"
/translation="MTKQMLLENVSFRYGKTGPLIVDHVSCEVYSGDFIGIIGPNGGG
KTTLTQLMLGLLQPVCGSISTYSVQDHRPLSIGWVPQHFSYDAAFPITVKETVLSGRL
ATLPWYGRYTQEDHEAAEEALLTVDLIDYKDSCFSHLSGGQIQRVLLARALAARPEFL
LLDEPTANIDPVNQQKILQILSALNKHCTILMITHDLHHTAGCFNRVFFMNKTLTTLA
DTTTISERFCCNTFGRCP"
misc_feature 486483..487100
/locus_tag="CTDLC_0416"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 486483..487094
/locus_tag="CTDLC_0416"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:224059"
misc_feature 486579..486602
/locus_tag="CTDLC_0416"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(486588..486593,486597..486605,486705..486707,
486951..486956,487047..487049)
/locus_tag="CTDLC_0416"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 486696..486707
/locus_tag="CTDLC_0416"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 486879..486908
/locus_tag="CTDLC_0416"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 486939..486956
/locus_tag="CTDLC_0416"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 486963..486974
/locus_tag="CTDLC_0416"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 487035..487055
/locus_tag="CTDLC_0416"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 487166..488047
/gene="yebI"
/locus_tag="CTDLC_0417"
/db_xref="GeneID:12387906"
CDS 487166..488047
/gene="yebI"
/locus_tag="CTDLC_0417"
/codon_start=1
/transl_table=11
/product="Metal transport system permease protein"
/protein_id="YP_005812348.1"
/db_xref="GI:385244504"
/db_xref="GeneID:12387906"
/translation="MPMISILCSLFPPLLFPSLLAAFGASIAAGIIGSYIVVKRIVSI
SGSIAHSILGGVGIALWLQYQFNLPISPLHGAIASAIFVAICIGNVHLKYHEREDSII
SMIWSIGMAIGIICISKLPSFNSELSDFLFGNILWVTPQDLYFLGILDLFIVATVSIC
HTRFLALCFDEKYMALNHYSIKTWYLLLLILTAITTVVLMYVMGVILMLSMLVLPVSI
ACRFSYKMSHIIYIASILNIVCSFLGIMLAYLLDLPVGPVIAILMGGAYSLSLLLKRS
YNASTPSPVSPESKINS"
misc_feature 487268..487978
/gene="yebI"
/locus_tag="CTDLC_0417"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(487274..487282,487637..487642,487646..487654,
487658..487663,487667..487684,487688..487696,
487820..487822,487841..487843)
/gene="yebI"
/locus_tag="CTDLC_0417"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(487277..487279,487283..487285,487298..487300,
487457..487459,487463..487468,487475..487480,
487487..487492,487499..487501,487508..487513,
487517..487519,487547..487552,487559..487561,
487787..487789,487934..487936,487943..487948,
487955..487957,487964..487969,487976..487978)
/gene="yebI"
/locus_tag="CTDLC_0417"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(487517..487519,487589..487591,487763..487765,
487775..487777,487910..487912,487925..487927)
/gene="yebI"
/locus_tag="CTDLC_0417"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(489060..489311)
/gene="rpmA"
/locus_tag="CTDLC_0419"
/db_xref="GeneID:12387907"
CDS complement(489060..489311)
/gene="rpmA"
/locus_tag="CTDLC_0419"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L25"
/protein_id="YP_005812349.1"
/db_xref="GI:385244505"
/db_xref="GeneID:12387907"
/translation="MAHKKGQGASRNGRDSESKRLGLKVGAGQRVSTGSILVRQRGTK
WHPAVNVGRGKDDTLFALVDGIVVMKKTDRTYVSVIPQA"
misc_feature complement(489072..489311)
/gene="rpmA"
/locus_tag="CTDLC_0419"
/note="50S ribosomal protein L27; Validated; Region: rpmA;
PRK05435"
/db_xref="CDD:235464"
gene complement(489342..489668)
/gene="rplU"
/locus_tag="CTDLC_0420"
/db_xref="GeneID:12387908"
CDS complement(489342..489668)
/gene="rplU"
/locus_tag="CTDLC_0420"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L21"
/protein_id="YP_005812350.1"
/db_xref="GI:385244506"
/db_xref="GeneID:12387908"
/translation="MMEPYAVIQTGNKQYQVRKGDVIDVELLDGISEENKEVLFQDVL
FTFDGEKASVGAPTVGNAVVKGELVSFVRGEKVVAYKYKKRKNYHKKIGHRQNYLRVK
ISDLVM"
misc_feature complement(489348..489656)
/gene="rplU"
/locus_tag="CTDLC_0420"
/note="50S ribosomal protein L21; Validated; Region: rplU;
PRK05573"
/db_xref="CDD:180138"
gene complement(489982..490054)
/locus_tag="CTDLC_r026"
/db_xref="GeneID:12387909"
tRNA complement(489982..490054)
/locus_tag="CTDLC_r026"
/product="tRNA-Phe"
/db_xref="GeneID:12387909"
gene 490215..490916
/locus_tag="CTDLC_0421"
/db_xref="GeneID:12387910"
CDS 490215..490916
/locus_tag="CTDLC_0421"
/codon_start=1
/transl_table=11
/product="membrane spanning protein"
/protein_id="YP_005812351.1"
/db_xref="GI:385244507"
/db_xref="GeneID:12387910"
/translation="MRLGFQESGNSPAKGACVMKKHFITGLVILLPLAITIAVVGMIM
NFLTQPFVGMVSDVFEKFSFYTKYRAFLRFGLQIVLLFGLFFTTVLLGFLARLMIFKS
LLSVYDKILHRIPIIKTVYKAAQQVMTTIFGSQSGSFKQVVMVPFPNREVLCIGLVAG
EAPTICSRDADDPMITVFIPTTPNPTSGFLTLFKKSDITFLDMKIEDAFKYVISCGVL
NSDPCATSPFIHPQS"
misc_feature 490254..490913
/locus_tag="CTDLC_0421"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2928"
/db_xref="CDD:225480"
gene 491086..491262
/locus_tag="CTDLC_042101"
/db_xref="GeneID:12387911"
CDS 491086..491262
/locus_tag="CTDLC_042101"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812352.1"
/db_xref="GI:385244508"
/db_xref="GeneID:12387911"
/translation="MLGYFMTRMSKQARRRAQSPKKRKPVYAVQHPQDAPRIAFKAHT
NTAKGVGVFVPQIG"
gene 491453..491938
/locus_tag="CTDLC_0422"
/db_xref="GeneID:12387912"
CDS 491453..491938
/locus_tag="CTDLC_0422"
/codon_start=1
/transl_table=11
/product="metal-binding protein"
/protein_id="YP_005812353.1"
/db_xref="GI:385244509"
/db_xref="GeneID:12387912"
/translation="MLILDRSSPQIFISNEQQDVSIDLQSAQRLVVLFLELQKVSTDQ
VYVYFLDDTALAQLHDEQFSDPSPTDTITLPIDKPGIASFPHVLGEAFVSPKAAMRFL
EQYTEDQLYHEISRYVVHSLLHMLGYDDQTDEDKRIMQEQEDVSLSFLAEHQALLRPA
V"
misc_feature 491474..491929
/locus_tag="CTDLC_0422"
/note="Predicted metal-dependent hydrolase [General
function prediction only]; Region: COG0319"
/db_xref="CDD:223396"
gene 492071..493180
/gene="corC"
/locus_tag="CTDLC_0423"
/db_xref="GeneID:12387913"
CDS 492071..493180
/gene="corC"
/locus_tag="CTDLC_0423"
/note="Magnesium and cobalt efflux protein"
/codon_start=1
/transl_table=11
/product="CorC"
/protein_id="YP_005812354.1"
/db_xref="GI:385244510"
/db_xref="GeneID:12387913"
/translation="MLYILLAIIVLFLFLGSATHRRASISAYGREGLPPFSSCPKVLP
LLCLIYGMLGAPVYQYIHNFFSLSPSIFWLIFLSFALVIYKFLPLCPGYSDDSFSYKV
SSSTVKTLENCLAGFKTPSITAMQQTPPPEPPNELSTNISCLDHMIAREIMTPKADIF
ALQGDTPISQAFPLIIDEGYSRIPLFTKSIDDITGMVLVKDLSPVYYKDPHTSQPLSS
IAYPPLYTPEIRRASLLLQEFRQKRCHLAIVVNEYGFTEGLVSMEDIIEEIFGEIADE
YDNQEDVHHKKIGNAWIVDGRMNISDAEECFGLHIEHESSYDTLGGYVFHKLGAVPEK
GMKIYYEDFAIDILSCSDRSVEKMKITPRRRKPLS"
misc_feature 492518..492868
/gene="corC"
/locus_tag="CTDLC_0423"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:223591"
misc_feature 492539..492874
/gene="corC"
/locus_tag="CTDLC_0423"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:239963"
misc_feature 492938..493159
/gene="corC"
/locus_tag="CTDLC_0423"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:215020"
gene 493369..493719
/gene="rsbV_1"
/locus_tag="CTDLC_0424"
/db_xref="GeneID:12387914"
CDS 493369..493719
/gene="rsbV_1"
/locus_tag="CTDLC_0424"
/codon_start=1
/transl_table=11
/product="Anti-sigma F factor antagonist"
/protein_id="YP_005812355.1"
/db_xref="GI:385244511"
/db_xref="GeneID:12387914"
/translation="MSNFQKEEQGQTGILHLQGKLDGVSSPAVQESISESLSNGMKNI
ILDCGDLDYISSAGIRVLLQSYHQVGKNAGKIALTSVSKTVEQTLYVTGFLSYFKVFD
SVNEALQALAKENS"
misc_feature 493378..493674
/gene="rsbV_1"
/locus_tag="CTDLC_0424"
/note="Sulphate Transporter and Anti-Sigma factor
antagonist) domain of anti-anti-sigma factors, key
regulators of anti-sigma factors by phosphorylation;
Region: STAS_anti-anti-sigma_factors; cd07043"
/db_xref="CDD:132914"
misc_feature order(493426..493428,493432..493440,493456..493458,
493525..493527,493531..493539,493543..493551,
493558..493563,493627..493629,493639..493644,
493648..493650)
/gene="rsbV_1"
/locus_tag="CTDLC_0424"
/note="anti sigma factor interaction site; other site"
/db_xref="CDD:132914"
misc_feature 493534..493536
/gene="rsbV_1"
/locus_tag="CTDLC_0424"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:132914"
gene 493897..495762
/locus_tag="CTDLC_0425"
/db_xref="GeneID:12387915"
CDS 493897..495762
/locus_tag="CTDLC_0425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812356.1"
/db_xref="GI:385244512"
/db_xref="GeneID:12387915"
/translation="MRRSVCYVTPSVARAGQISTWRFEYSSANFLPEGTLLKFDLGID
GRPIDWEIPSTDLSQPCNTIYLETPSEDIVAAKAVYAPGGYIPTFEFTLPCDVEAGDT
FSIILGSSPNFPQEDSSGNGAQLFTQRRKPFSLYVDPSGKGSFEDPDIFTMDIRGNVL
KNIRIFAPSYVIKNKRFDITVRFEDEFGNLTNFSPEETHIELSYEHLRENLNWQLFIP
ETGFVILPNLYFNEPGIYRIQLRNQATKEVFTSAPIKCFAETSSHLLWGLLHGESERV
DSEGNIESCLRYFRDDCALNFFATSSFEIQDGLTPETIKTINQTVADFNEEDRFIALS
GAQYLSEEPGEGIREVLLMKEPKSPGKHKECKLFPLSKLYKQSTSHELISIPSFTASK
KFGYNFNNFHPEFERVVEIYNAWGCSERTEAEGNPFPIKGSIDSENPEGTVLSALKRN
LRFGFVAGGLDDRNLYNHFFDSDQQQYSPGLTAVICNKYSRDSLLEALYQRQCYATTG
QRIIVNFQITSAPMGSELSTAIKPGLVINRHISGYVAGTAKIASIEIIRNEDILHTFH
PDGNNFEYEYDDLSPFAQVTLKDPQNGAPFAFYYLRVTQENGAMAWSSPIWIDLN"
misc_feature <495109..>495483
/locus_tag="CTDLC_0425"
/note="Protein of unknown function (DUF3604); Region:
DUF3604; pfam12228"
/db_xref="CDD:221472"
gene 495959..497068
/locus_tag="CTDLC_0426"
/db_xref="GeneID:12387916"
CDS 495959..497068
/locus_tag="CTDLC_0426"
/note="thiamine biosynthesis enzyme"
/codon_start=1
/transl_table=11
/product="biotin synthase"
/protein_id="YP_005812357.1"
/db_xref="GI:385244513"
/db_xref="GeneID:12387916"
/translation="MTTLPARILPKSACLKTLFDDYLSGARLSEEQALQLLLVDAEDQ
QALWSFADLIRANRVGDTVFYSSTLYLYPTNFCQFNCTFCSFYAKPGNPTGWFFTPDQ
LVQSIKENPSPITETHIVAGCYPSCNLAYYEELFSKIKQNFPDLHIKALSAIEYDYLS
KLDNLPVKEVMQRLRIAGLDSIPGGGAEILVDEVRETLSRGRLSSQGFLEIHETAHSL
GIPSNATMLCYHRETPADIMTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLHKM
TSRHSIPPATIIAVARLFLDNIPNIKALWNYLGLDVALHLLSCGANDLSSTHQGEKVF
RMASSQEPIRMDIEGMSHLIIQHGRIPCLVNSKTV"
misc_feature 495959..497065
/locus_tag="CTDLC_0426"
/note="hypothetical protein; Provisional; Region:
PRK05926"
/db_xref="CDD:168296"
misc_feature 496169..>496504
/locus_tag="CTDLC_0426"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(496187..496189,496193..496195,496199..496201,
496205..496213,496319..496321,496325..496330,
496421..496429)
/locus_tag="CTDLC_0426"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 497041..497862
/locus_tag="CTDLC_0427"
/db_xref="GeneID:12387917"
CDS 497041..497862
/locus_tag="CTDLC_0427"
/codon_start=1
/transl_table=11
/product="cytosolic protein"
/protein_id="YP_005812358.1"
/db_xref="GI:385244514"
/db_xref="GeneID:12387917"
/translation="MLSQFQDRLNIGCVRYVNALPFSSGLSQAPGVSLLMDTPTNLVP
KLLSREIDYALTSVAATFSSPLHRVSSFGIAAYKKILSVNLHATSQFFAKEAPHIAAT
KESLSSILLLRVLCENLWNIPFPSVTLLSSDSILTQAEHYDALLLIGDTALRHPIIPG
FHTYDLAASWYDLTAKPFVFAGILSLSSTISFQLQQEFSSALNYFQNHKEDITSKAAA
LLKLPESLMQEYYTLCRYELSEEDFAGLEQFRDYYDRLPQQAKYPNHVRFSCAYL"
misc_feature 497059..497832
/locus_tag="CTDLC_0427"
/note="Predicted periplasmic solute-binding protein
[General function prediction only]; Region: COG1427"
/db_xref="CDD:224344"
gene 497798..498487
/gene="ubiE"
/locus_tag="CTDLC_0428"
/db_xref="GeneID:12387918"
CDS 497798..498487
/gene="ubiE"
/locus_tag="CTDLC_0428"
/EC_number="2.1.1.-"
/codon_start=1
/transl_table=11
/product="Ubiquinone/menaquinone biosynthesis
methyltransferase UBIE"
/protein_id="YP_005812359.1"
/db_xref="GI:385244515"
/db_xref="GeneID:12387918"
/translation="MTDFHNKPNIQIMFDSLAPTYDKINGILSLGLHIAWNNALVSLL
GETNHLLDLCAGTGRVALSYVQNYPRASATLVDFSTKMLENVQKRHPSAPFSYITSDV
THLPLPDNTFRLASMAYGLRNLSYPLEALREVYRVLQPGGHLGILELTRPATYNPVYL
LHKLYLNLVVPSVGRFYSGNSYAYSYLKESIRDLPRDAALEAIFHAAHLRPIRKRKLL
FGTATIWILEK"
misc_feature 497813..498484
/gene="ubiE"
/locus_tag="CTDLC_0428"
/note="Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
/db_xref="CDD:32408"
misc_feature 497945..498229
/gene="ubiE"
/locus_tag="CTDLC_0428"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(497954..497974,498026..498031,498095..498103,
498149..498151)
/gene="ubiE"
/locus_tag="CTDLC_0428"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(498513..499538)
/locus_tag="CTDLC_0429"
/db_xref="GeneID:12387919"
CDS complement(498513..499538)
/locus_tag="CTDLC_0429"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812360.1"
/db_xref="GI:385244516"
/db_xref="GeneID:12387919"
/translation="MLSNRASPILEPMTTYPVPQNPLLLRVLRLMDAFSKSDDERDFY
LDRVEGFIFYIDLDKDQEDLDKIYQELEENADRYCLIPKLTFYEIKKIMETFVNEKIY
DIDTKEKFLEIVQSKNAREQFLEFLYDHETEQEKWQQFYVERSRIRIIEWLRNNQFQF
VFEEDLDFSKHILEQLKVHLFDAKVSKELTQARQLLLNKSKVYYSNEALNPRPKRGRP
PKQSAKVEAETTISSDIYTKVPSVARRFLFLPEITSPSSLTFSEKFDTEEEFLAHLRG
GGRLEDQLNLAKFSERFDSLRELSAKLGYDSDGETGDFFDEEYDDEEEEIKPKKTTKR
GRKKSRS"
misc_feature complement(498993..499481)
/locus_tag="CTDLC_0429"
/note="Uncharacterized protein family (UPF0158); Region:
UPF0158; pfam03682"
/db_xref="CDD:146358"
gene complement(499563..500390)
/gene="dapF"
/locus_tag="CTDLC_0430"
/db_xref="GeneID:12387920"
CDS complement(499563..500390)
/gene="dapF"
/locus_tag="CTDLC_0430"
/EC_number="5.1.1.7"
/codon_start=1
/transl_table=11
/product="diaminopimelate epimerase"
/protein_id="YP_005812361.1"
/db_xref="GI:385244517"
/db_xref="GeneID:12387920"
/translation="MGFSSLLTTCRYLLYSGAGNSFILGESMPSLEDVLFLCQEEMVD
GFLCVESSEIADAKLTVFNSDGSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQ
GKFFSMNRVLVDMTLPDWKKAERKLTHVLPGMPEQVFFIDTGVPHVVVFVSDLSKVPV
QEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVA
ADIFSLGQDFSIAVCSRSRNLIKIFSEKGKVFLEGPVSLLNRSENFGWLEPKSRRFG"
misc_feature complement(499596..500363)
/gene="dapF"
/locus_tag="CTDLC_0430"
/note="diaminopimelate epimerase; Region: DapF; TIGR00652"
/db_xref="CDD:213546"
misc_feature complement(<500103..>500261)
/gene="dapF"
/locus_tag="CTDLC_0430"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:216645"
misc_feature complement(499617..499976)
/gene="dapF"
/locus_tag="CTDLC_0430"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:216645"
gene complement(500359..500949)
/gene="clpP_1"
/locus_tag="CTDLC_0431"
/db_xref="GeneID:12387921"
CDS complement(500359..500949)
/gene="clpP_1"
/locus_tag="CTDLC_0431"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005812362.1"
/db_xref="GI:385244518"
/db_xref="GeneID:12387921"
/translation="MGDSMPEGEMMHKLQDVIDRKLLDSRRIFFSEPVTEKSATEAIK
KLWYLELTNPGQPIVFVINSPGGSVDAGFAVWDQIKMISSPLTTVVTGLAASMGSVLS
LCAVPGRRFATPHARIMIHQPSIGGTITGQATDLDIHAREILKTKARIIDVYVEATGQ
SREVIEKAIDRDMWMSANEAMEFGLLDGILFSFNDL"
misc_feature complement(500362..500943)
/gene="clpP_1"
/locus_tag="CTDLC_0431"
/note="ATP-dependent Clp protease proteolytic subunit;
Reviewed; Region: PRK12553"
/db_xref="CDD:183589"
misc_feature complement(500383..500898)
/gene="clpP_1"
/locus_tag="CTDLC_0431"
/note="Caseinolytic protease (ClpP) is an ATP-dependent,
highly conserved serine protease; Region: S14_ClpP_2;
cd07017"
/db_xref="CDD:132928"
misc_feature complement(order(500428..500430,500434..500436,
500503..500505,500509..500511,500515..500517,
500524..500526,500572..500583,500599..500601,
500605..500607,500671..500673,500695..500697,
500707..500712,500719..500721,500728..500730,
500740..500742,500761..500763,500806..500808,
500815..500820,500827..500832,500857..500859,
500863..500865))
/gene="clpP_1"
/locus_tag="CTDLC_0431"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:132928"
misc_feature complement(order(500434..500436,500587..500589,
500662..500664))
/gene="clpP_1"
/locus_tag="CTDLC_0431"
/note="active site residues [active]"
/db_xref="CDD:132928"
gene complement(500949..502472)
/gene="glyA"
/locus_tag="CTDLC_0432"
/db_xref="GeneID:12387922"
CDS complement(500949..502472)
/gene="glyA"
/locus_tag="CTDLC_0432"
/EC_number="2.1.2.1"
/codon_start=1
/transl_table=11
/product="Serine hydroxymethyltransferase"
/protein_id="YP_005812363.1"
/db_xref="GI:385244519"
/db_xref="GeneID:12387922"
/translation="MQGLISGGGNMASLLDRYLRNISDKSQQNLASVAYLASLDHLLH
AFPSIGQSIVQELKSQRSRLKMIASENFSSLSVQLAMGNLLTDKYCEGSPFKRFYSCC
ENVDAIEWECAETAKELFGAESAFVQPHSGADANLLAIMSIITQKIQSPAVQRLGYKT
INDLPEQEYEALKAEMAQHKCLGPSLNSGGHLTHGTVRMNIMSKLMHCLPYEVNLDTE
LFDYDEIAKIAKEHKPTVLIAGYSSYSRRLNFATLKQIAEDCGAVLWVDMAHFAGLVA
GGVFVGEENPMPYADIVTTTTHKTLRGPRGGLVLAKKEYANTLNKACPLMMGGPLPHV
IAAKAIALKEAMTINFRKYAHKVVENARTLAEVFQRNGLRLLTGGTDNHMLIIDLTSL
GVPGRIAEDMLTSVGIAVNRNTIPSDASGQWKTSGIRLGTPALTTLGMGSAEMEEVAN
IIVKVLRNITVRSNAESGSSKSEGELSEGIAQEARQRVADLLGRFPLYPEIDLETLV"
misc_feature complement(500955..502436)
/gene="glyA"
/locus_tag="CTDLC_0432"
/note="serine hydroxymethyltransferase; Provisional;
Region: PRK13580"
/db_xref="CDD:184161"
misc_feature complement(501000..502346)
/gene="glyA"
/locus_tag="CTDLC_0432"
/note="Serine-glycine hydroxymethyltransferase (SHMT).
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl...; Region: SHMT;
cd00378"
/db_xref="CDD:99733"
misc_feature complement(order(501426..501428,501480..501482,
501858..501863,502062..502064,502083..502085,
502128..502130,502152..502157,502209..502211,
502263..502265,502278..502280,502305..502310,
502329..502331,502335..502337))
/gene="glyA"
/locus_tag="CTDLC_0432"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99733"
misc_feature complement(order(501186..501188,501558..501560,
501576..501581,501663..501665,501672..501674,
501747..501749,501900..501902,502074..502079,
502176..502178,502206..502208,502266..502268))
/gene="glyA"
/locus_tag="CTDLC_0432"
/note="glycine-pyridoxal phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99733"
misc_feature complement(order(501186..501188,501576..501578,
501900..501902,502266..502268))
/gene="glyA"
/locus_tag="CTDLC_0432"
/note="active site"
/db_xref="CDD:99733"
misc_feature complement(order(501234..501236,501504..501506,
501897..501899,501903..501905,501915..501917,
502179..502181,502200..502202))
/gene="glyA"
/locus_tag="CTDLC_0432"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:99733"
gene 502806..503477
/gene="hemD"
/locus_tag="CTDLC_0433"
/db_xref="GeneID:12387923"
CDS 502806..503477
/gene="hemD"
/locus_tag="CTDLC_0433"
/EC_number="2.1.1.107"
/EC_number="4.2.1.75"
/note="uroporphyrinogen-III synthase"
/codon_start=1
/transl_table=11
/product="Uroporphyrin-III C-methyltransferase"
/protein_id="YP_005812364.1"
/db_xref="GI:385244520"
/db_xref="GeneID:12387923"
/translation="MPLYLGLNPSSAKQYSAVFQPIIRIVPFSKHVPQIRHARKFLVS
TSHILLTSPSSTACFFSSIRKRIPLSLFRNKSFVTIGEATSSRVKAFLPKANIVQSAF
PQAEAFLPILSTLPSSSSLLYPHSVLARPILRSLLQTLPFSSFSYPHYTVKPITLSVS
TFLPHKTIILTSPSIVRAYAQLFPCLPDKEHWCLGEISAAEFKQIFHTPPSKILFSTK
EPTGC"
misc_feature 502806..503423
/gene="hemD"
/locus_tag="CTDLC_0433"
/note="uroporphyrinogen-III synthase; Reviewed; Region:
hemD; PRK05928"
/db_xref="CDD:235647"
misc_feature 502848..503417
/gene="hemD"
/locus_tag="CTDLC_0433"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature order(502959..502967,503052..503054,503184..503186,
503253..503255,503259..503261,503316..503330)
/gene="hemD"
/locus_tag="CTDLC_0433"
/note="active site"
/db_xref="CDD:119440"
gene 503580..504116
/gene="ispF"
/locus_tag="CTDLC_0434"
/db_xref="GeneID:12387924"
CDS 503580..504116
/gene="ispF"
/locus_tag="CTDLC_0434"
/EC_number="4.6.1.12"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 2,4-cyclo diphosphate
synthase"
/protein_id="YP_005812365.1"
/db_xref="GI:385244521"
/db_xref="GeneID:12387924"
/translation="MTEIPSSFVLPDPEWIYRVGIGQDSHRFLPDEDPKPCILGGIIF
ENTPGFEANSDGDVVFHAICNAFSSVTHKGILGGLADELLKTKGITDSVVYLQEAVAS
LKPTQRVSHLAITIEGKRPKLLPQLPSMRKRIAEVLHIPLDSINITATSGEGLTAMGQ
GYGVQCFCVLTIMEYCRY"
misc_feature 503631..504095
/gene="ispF"
/locus_tag="CTDLC_0434"
/note="MECDP_synthase
(2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
encoded by the ispF gene, catalyzes the formation of
2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
biosynthesis; Region: MECDP_synthase; cd00554"
/db_xref="CDD:100025"
misc_feature order(503631..503636,503640..503642,503646..503648,
503652..503660,503670..503672,503784..503786,
503790..503795,503799..503804,503910..503912,
503916..503918,503922..503924,503943..503945,
