LOCUS NC_001641 4615 bp RNA linear VRL 30-NOV-2009
DEFINITION Saccharomyces cerevisiae virus L-BC (La), complete genome.
ACCESSION NC_001641
VERSION NC_001641.1 GI:9627980
DBLINK Project:14643
KEYWORDS .
SOURCE Saccharomyces cerevisiae virus L-BC (La)
ORGANISM Saccharomyces cerevisiae virus L-BC (La)
Viruses; dsRNA viruses; Totiviridae; Totivirus.
REFERENCE 1 (bases 1 to 4615)
AUTHORS Park,C.M., Lopinski,J.D., Masuda,J., Tzeng,T.H. and Bruenn,J.A.
TITLE A second double-stranded RNA virus from yeast
JOURNAL Virology 216 (2), 451-454 (1996)
PUBMED 8607277
REFERENCE 2 (bases 1 to 4615)
AUTHORS Bruenn,J.A.
TITLE A closely related group of RNA-dependent RNA polymerases from
double-stranded RNA viruses
JOURNAL Nucleic Acids Res. 21 (24), 5667-5669 (1993)
PUBMED 8284213
REFERENCE 3 (bases 1 to 4615)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 4615)
AUTHORS Bruenn,J.A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-1993) Jeremy A. Bruenn, Biological Sciences,
State University of New York at Buffalo, SUNY/Buffalo, Buffalo, NY
14260, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to U01060.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4615
/organism="Saccharomyces cerevisiae virus L-BC (La)"
/mol_type="genomic RNA"
/host="Saccharomyces cerevisiae"
/db_xref="taxon:42478"
/lab_host="Saccharomyces cerevisiae"
/note="Saccharomyces cerevisiae virus ScV-La"
gene 24..2117
/gene="cap"
/locus_tag="ScVLBCgp1"
/db_xref="GeneID:1403711"
CDS 24..2117
/gene="cap"
/locus_tag="ScVLBCgp1"
/codon_start=1
/product="capsid"
/protein_id="NP_042580.1"
/db_xref="GI:9627981"
/db_xref="GeneID:1403711"
/translation="MSSLLNSLLPEYFKPKTNLNINSSRVQYGFNARIDMQYEDDSGT
RKGSRPNAFMSNTVAFIGNYEGIIVDDIPILDGLRADIFDTHGDLDMGLVEDALSKST
MIRRNVPTYTAYASELLYKRNLTSLFYNMLRLYYIKKWGSIKYEKDAIFYDNGHACLL
NRQLFPKSRDASLESSLSLPEAEIAMLDPGLEFPEEDVPAILWHGRVSSRATCILGQA
CSEFAPLAPFSIAHYSPQLTRKLFVNAPAGIEPSSGRYTHEDVKDAITILVSANQAYT
DFEAAYLMLAQTLVSPVPRTAEASAWFINAGMVNMPTLSCANGYYPALTNVNPYHRLD
TWKDTLNHWVAYPDMLFYHSVAMIESCYVELGNVARVSDSDAINKYTFTELSVQGRPV
MNRGIIVDLTLVAMRTGREISLPYPVSCGLTRTDALLQGTEIHVPVVVKDIDMPQYYN
AIDKDVIEGQETVIKVKQLPPAMYPIYTYGINTTEFYSDHFEDQVQVEMAPIDNGKAV
FNDARKFSKFMSIMRMMGNDVTATDLVTGRKVSNWADNSSGRFLYTDVKYEGQTAFLV
DMDTVKARDHCWVSIVDPNGTMNLSYKMTNFRAAMFSRNKPLYMTGGSVRTIATGNYR
DAAERLRAMDETLRLKPFKITEKLDFRVAAYAIPSLSGSNMPSLHHQEQLQISEVDAE
PINPIGEDELPPDIE"
misc_feature <813..1088
/gene="cap"
/locus_tag="ScVLBCgp1"
/note="L-A virus, major coat protein; Region:
LA-virus_coat; pfam09220"
/db_xref="CDD:150036"
gene 1970..4561
/gene="pol"
/locus_tag="ScVLBCgp2"
/db_xref="GeneID:1403712"
CDS <1970..4561
/gene="pol"
/locus_tag="ScVLBCgp2"
/codon_start=1
/product="RNA polymerase"
/protein_id="NP_042581.1"
/db_xref="GI:9627982"
/db_xref="GeneID:1403712"
/translation="FSCSSLRDTKFVGQQYAILTPSGTTTDIRSGRGTNQSYRRGRTS
TGYRIGVEDDEDLDIGTVKYIVPLYLNGDNVAQNCLEATHVLIKACSIANRIVDDGEG
HCFTQQGLAQQWIFHRGEMIFVKAVRIGQLNAYYVDYKNVTNYSLKTAAQVGATISNN
LRHGFVDNQQDAYTRLVANYSDTRKWIRDNFTYNYNMEKEKYRITQYHHTHVRLKDLF
PSRKIVKLEGYEALLAMMLDRFNNIESTHVTFFTYLRALPDREKEVFISLVLNYNGLG
REWLKSEGVRAKQAQGTVKYDMSKLFELNVLENGVDEEVDWEKEKRNRSDIKTVNISY
AKVLEHCRELFIMARAEGKRPMRMKWQEYWRQRAVIMPGGSVHSQHPVEQDVIRVLPR
EIRSKKGVASVMPYKEQKYFTSRRPEIHAYTSTKYEWGKVRALYGCDFSSHTMADFGL
LQCEDTFPGFVPTGSYANEDYVRTRIAGTHSLIPFCYDFDDFNSQHSKEAMQAVIDAW
ISVYHDKLTDDQIEAAKWTRNSVDRMVAHQPNTGETYDVKGTLFSGWRLTTFFNTALN
YCYLANAGINSLVPTSLHNGDDVFAGIRTIADGISLIKNAAATGVRANTTKMNIGTIA
EFLRVDMRAKNSTGSQYLTRGIATFTHSRVESDAPLTLRNLVSAYKTRYDEILARGAS
IDNMKPLYRKQLFFARKLFNVEKDIVDNLITMDISCGGLQEKGRVSEMVLQEVDIENI
DSYRKTRMIAKLIDKGVGDYTAFLKTNFSEIADAITRETRVESVTKAYNVKKKTVVRA
FRDLSAAYHERAVRHAWKGMSGLHIVNRIRMGVSNLVMVVSKINPAKANVLAKSGDPT
KWLAVLT"
misc_feature 2519..3928
/gene="pol"
/locus_tag="ScVLBCgp2"
/note="Viral RNA-directed RNA-polymerase; Region: RdRP_4;
pfam02123"
/db_xref="CDD:145334"
misc_feature 1970
/gene="cap"
/locus_tag="ScVLBCgp1"
/function="translational frameshift site"
ORIGIN
1 gaatttttcg gtgaaccgga attatgtcgt ctctgttaaa ttcattacta ccagaatatt
61 ttaaacctaa aactaatttg aatatcaact cttctagggt ccaatatggc tttaatgctc
121 gcattgatat gcagtatgaa gacgatagtg ggactagaaa aggctcaaga cccaatgcat
181 ttatgtctaa cacagttgct tttataggaa actatgaagg tattattgtt gatgacattc
241 cgatattgga tggtcttagg gccgacattt ttgatactca tggtgactta gacatgggcc
301 tcgttgagga tgcattgtct aagagtacca tgattagaag gaatgtacca acttatactg
361 cttacgcgag tgaattactg tataagagaa accttacatc tctattttac aatatgctcc
421 gtttatacta cattaaaaaa tggggcagta ttaagtatga aaaagatgcc atcttttatg
481 ataatggcca cgcctgtctt ttaaacaggc aattgtttcc aaagtctcgt gatgcttctt
541 tggaatcaag cctctctttg cctgaggctg aaattgcaat gcttgatcct ggcctggaat
601 ttccagaaga ggatgtgcct gcaattttat ggcacggcag agtgtcatcc agagcaacgt
661 gtatcttagg gcaagcttgc tcagagttcg cgcctctggc ccccttttcg attgcgcatt
721 attcaccaca attgacgaga aaactatttg tcaatgcgcc cgctgggatt gagcctagct
781 ccgggcggta tactcacgag gatgtaaaag atgcgattac gatccttgtg tctgcaaacc
841 aggcttatac tgactttgaa gcagcatact tgatgcttgc tcaaacgttg gtctcacctg
901 taccacgcac tgccgaagca agtgcatggt tcatcaatgc tggcatggtc aatatgccaa
961 ctttgtcatg tgcaaatggt tattatccag cactgaccaa tgtcaatcct taccaccggc
1021 tagacacatg gaaagatacg ttaaatcatt gggtggctta tcccgacatg ctgttttacc
1081 attcagtggc aatgattgag agctgctatg ttgaactcgg gaatgtggct cgtgtgtcag
1141 acagtgatgc aataaacaaa tacactttca ctgagctatc agtgcaagga cggcctgtta
1201 tgaatcgagg aattattgta gatctgacac ttgtggcaat gcgtactggt agggagatct
1261 cactacctta cccggtcagc tgtggcctga cccgtacaga cgcgttattg caaggtactg
1321 agattcacgt tccagttgtt gtcaaagata tcgacatgcc ccagtattac aacgcgattg
1381 ataaggatgt tattgagggg caggaaactg tgattaaagt gaaacagctg ccaccagcta
1441 tgtatccaat ttatacttac gggatcaaca ctactgaatt ctattctgac cattttgaag
1501 accaggtaca agttgaaatg gcaccaatcg ataatggaaa agcagttttt aacgatgcaa
1561 gaaagttttc gaaatttatg tccataatgc gcatgatggg gaatgatgtt actgctactg
1621 atttagttac aggtagaaaa gtgtcgaatt gggccgacaa ctcatcaggg cgtttcttgt
1681 acacggatgt gaagtatgaa ggacaaactg cctttttggt tgatatggat actgtcaagg
1741 cgagagacca ctgttgggtg tcaattgttg atcctaatgg tacaatgaac ttgtcatata
1801 agatgaccaa ttttagagca gcaatgtttt ctagaaacaa gcccttgtat atgacagggg
1861 ggtcagtcag gaccatagct actggcaatt atcgagatgc tgctgaaaga ttacgtgcaa
1921 tggatgaaac gctcagatta aaacctttta agattactga gaagttggat tttcgtgtag
1981 cagcttacgc gataccaagt ttgtcgggca gcaatatgcc atccttacac catcaggaac
2041 aactacagat atcagaagtg gacgcggaac caatcaatcc tataggagag gacgaacttc
2101 caccggatat agaataggtg tcgaagacga tgaggactta gatattggta cggtcaaata
2161 cattgtgcca ttgtatttga acggtgataa tgtggcacaa aattgtttag aagcaacaca
2221 cgtgcttatc aaagcttgta gtattgcgaa ccggattgta gatgacggag agggtcactg
2281 tttcacacag caagggctgg cgcagcagtg gatcttccat aggggggaga tgatatttgt
2341 gaaggcggta cgcattggtc aactcaatgc atattatgta gactataaga acgtcacaaa
2401 ttatagtctt aaaaccgctg ctcaagtagg agcgacgata tcaaataact tacgccacgg
2461 atttgttgac aatcaacaag acgcatacac gcgcttggtt gccaactact ctgatacgcg
2521 gaagtggata cgtgacaatt ttacatataa ttataatatg gagaaagaaa agtataggat
2581 aacccaatac caccatacac atgtgaggtt gaaagatttg tttccatcca ggaaaatagt
2641 taaactagag ggatatgaag ccttgttggc aatgatgcta gacaggttta acaacataga
2701 gtcaacacat gtaactttct tcacatattt aagagcacta cctgaccgtg aaaaagaagt
2761 ctttattagc ttagtcttaa actataatgg ccttggcaga gagtggttga agtctgaagg
2821 tgttagggct aaacaagcac aaggtactgt gaaatacgat atgagtaaac tatttgaact
2881 gaatgtacta gagaacggag ttgacgaaga agttgactgg gagaaagaga aacgcaacag
2941 gtcagatatc aagactgtta acataagtta tgcaaaagtt ctcgaacatt gtagagagct
3001 attcatcatg gcgagggccg aagggaaacg gccaatgagg atgaaatggc aagagtactg
3061 gaggcagaga gcagttatca tgccaggtgg atcggtccac agtcaacatc cagtcgaaca
3121 ggacgtgatt agagtattac ccagagaaat cagaagtaag aagggggtgg caagtgtcat
3181 gccatacaaa gaacagaagt atttcacgtc cagaaggccg gaaatacacg cttacacttc
3241 aacgaaatac gagtggggaa aagtgagggc actatatggg tgtgattttt catcacatac
3301 aatggctgat tttggattgt tacaatgcga ggatacattc ccgggctttg taccaacagg
3361 gtcttacgcc aatgaggatt atgtcaggac cagaattgct gggactcact cattgatccc
3421 tttctgttac gatttcgatg atttcaacag ccaacattca aaggaagcca tgcaagcagt
3481 gattgatgca tggatatctg tctatcacga taagttaaca gatgaccaga tagaggcggc
3541 aaagtggaca cgaaactcgg tagatagaat ggtcgctcac caacctaaca ctggtgagac
3601 ttatgatgtt aaagggacac tgtttagtgg ctggcgatta acaacatttt tcaatacggc
3661 gttgaactat tgctacctgg ctaatgcagg tataaactca ctagtgccaa cgagtctcca
3721 taatggtgat gatgtttttg cagggataag gacaatagct gacggtattt ctttgatcaa
3781 aaacgccgca gccacgggag ttcgcgctaa tacaactaaa atgaacattg gtacgatagc
3841 agagtttttg agagttgata tgcgtgcaaa aaatagtact ggcagtcagt atttaacaag
3901 agggattgct accttcacgc acagtagggt tgagtctgat gcaccactga cattgcgcaa
3961 tctagtatct gcttacaaaa ccagatatga cgagatttta gctcgtggcg caagcatcga
4021 taacatgaag ccactctatc gtaagcaatt attttttgct agaaagttgt tcaatgtcga
4081 gaaggacatt gttgacaatc tgataacgat ggacatatca tgtggcggtt tgcaagaaaa
4141 gggtagggta tcagagatgg tgttacagga ggttgacatt gagaatatag atagttatag
4201 gaagacaagg atgatcgcca aactgattga caagggggtt ggcgattata ctgcattcct
4261 gaaaactaac ttttccgaga tagctgatgc tatcacaaga gagacacgtg tagagtcagt
4321 gaccaaggct tataatgtta agaagaaaac ggtcgtacgc gcgtttaggg acctaagcgc
4381 agcatatcat gaaagagcgg tgagacatgc ttggaagggg atgagtggac tacacatagt
4441 caacaggatt cgtatgggag tgagcaactt agtaatggtt gttagcaaaa tcaatcctgc
4501 aaaagctaat gtgctagcca aatcaggaga tcctacaaaa tggcttgcag tccttacatg
4561 atatacaggc aaccacataa gacctgagaa caaagagtac atacgatact acgca
//
