LOCUS NC_002505 2961149 bp DNA circular BCT 26-MAR-2013
DEFINITION Vibrio cholerae O1 biovar El Tor str. N16961 chromosome I, complete
sequence.
ACCESSION NC_002505
VERSION NC_002505.1 GI:15640032
DBLINK Project: 57623
BioProject: PRJNA57623
KEYWORDS .
SOURCE Vibrio cholerae O1 biovar El Tor str. N16961
ORGANISM Vibrio cholerae O1 biovar El Tor str. N16961
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Vibrio.
REFERENCE 1 (bases 1 to 2961149)
AUTHORS Heidelberg,J.F., Eisen,J.A., Nelson,W.C., Clayton,R.A., Gwinn,M.L.,
Dodson,R.J., Haft,D.H., Hickey,E.K., Peterson,J.D., Umayam,L.A.,
Gill,S.R., Nelson,K.E., Read,T.D., Tettelin,H., Richardson,D.,
Ermolaeva,M.D., Vamathevan,J., Bass,S., Qin,H., Dragoi,I.,
Sellers,P., McDonald,L., Utterback,T., Fleishmann,R.D.,
Nierman,W.C., White,O., Salzberg,S.L., Smith,H.O., Colwell,R.R.,
Mekalanos,J.J., Venter,J.C. and Fraser,C.M.
TITLE DNA sequence of both chromosomes of the cholera pathogen Vibrio
cholerae
JOURNAL Nature 406 (6795), 477-483 (2000)
PUBMED 10952301
REFERENCE 2 (bases 1 to 2961149)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (18-SEP-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2961149)
AUTHORS Heidelberg,J.F., Eisen,J.A., Nelson,W.C., Clayton,R.A., Gwinn,M.L.,
Dodson,R.J., Haft,D.H., Hickey,E.K., Peterson,J.D., Umayam,L.A.,
Gill,S.R., Nelson,K.E., Read,T.D., Tettelin,H., Richardson,D.,
Ermolaeva,M.D., Vamathevan,J., Bass,S., Qin,H., Dragoi,I.,
Sellers,P., McDonald,L., Utterback,T., Fleishmann,R.D.,
Nierman,W.C., White,O., Salzberg,S.L., Smith,H.O., Colwell,R.R.,
Mekalanos,J.J., Venter,J.C. and Fraser,C.M.
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2000) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE003852.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2961149
/organism="Vibrio cholerae O1 biovar El Tor str. N16961"
/mol_type="genomic DNA"
/strain="N16961"
/serotype="O1"
/db_xref="taxon:243277"
/chromosome="I"
/biotype="El Tor"
gene complement(235..402)
/locus_tag="VC0001"
/db_xref="GeneID:2614109"
CDS complement(235..402)
/locus_tag="VC0001"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_062585.1"
/db_xref="GI:15640033"
/db_xref="GeneID:2614109"
/translation="MAQTRHQSLLNNDLFHAERLNAALFFGLWINLTVVKKLIDAFSI
KSHVDNYTIIR"
gene complement(372..806)
/locus_tag="VC0002"
/db_xref="GeneID:2615827"
CDS complement(372..806)
/locus_tag="VC0002"
/note="'An electron-transfer protein; flavodoxin binds one
FMN molecule, which serves as a redox-active prosthetic
group'"
/codon_start=1
/transl_table=11
/product="flavodoxin"
/protein_id="NP_062586.1"
/db_xref="GI:15640034"
/db_xref="GeneID:2615827"
/translation="MIHIITGSTLGGAEYVGDHLSDLLQEQGFDTKIHNQPNMSEIPA
KGTWLIITSTHGAGEYPDNIQPFIQALQNTPPNTSALRYAVVAIGDSSYDTFCAAGKH
AYQLLGDIGAKPLANCFTIDVQEHPVPEDAAEAWLKRVINRF"
misc_feature complement(375..806)
/locus_tag="VC0002"
/note="FMN-binding protein MioC; Provisional; Region:
PRK09004"
/db_xref="CDD:181608"
gene complement(816..2210)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/db_xref="GeneID:2614455"
CDS complement(816..2210)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="'in Escherichia coli this protein is involved in
the biosynthesis of the hypermodified nucleoside
5-methylaminomethyl-2-thiouridine, which is found in the
wobble position of some tRNAs and affects ribosomal
frameshifting; shows potassium-dependent dimerization and
GTP hydrolysis; also involved in regulation of
glutamate-dependent acid resistance and activation of
gadE'"
/codon_start=1
/transl_table=11
/product="tRNA modification GTPase TrmE"
/protein_id="NP_062587.1"
/db_xref="GI:15640035"
/db_xref="GeneID:2614455"
/translation="MALIQSCSGNTMTTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQ
TVTGRTLRPRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDM
LIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQG
EFSKRIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVSADLQTIIDNLAAVRREAN
QGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPL
HIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKL
PENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQ
EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSD
DLLGRIFSSFCIGK"
misc_feature complement(819..2180)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="tRNA modification GTPase TrmE; Reviewed; Region:
trmE; PRK05291"
/db_xref="CDD:179996"
misc_feature complement(1821..2165)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="GTP-binding protein TrmE N-terminus; Region:
TrmE_N; pfam10396"
/db_xref="CDD:204472"
misc_feature complement(1050..1541)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="trmE is a tRNA modification GTPase; Region: trmE;
cd04164"
/db_xref="CDD:206727"
misc_feature complement(1491..1514)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="G1 box; other site"
/db_xref="CDD:206727"
misc_feature complement(order(1101..1109,1167..1169,1173..1178,
1488..1499,1503..1505))
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206727"
misc_feature complement(1419..1469)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="Switch I region; other site"
/db_xref="CDD:206727"
misc_feature complement(1428..1430)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="G2 box; other site"
/db_xref="CDD:206727"
misc_feature complement(order(1296..1340,1344..1376))
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="Switch II region; other site"
/db_xref="CDD:206727"
misc_feature complement(1362..1373)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="G3 box; other site"
/db_xref="CDD:206727"
misc_feature complement(1167..1178)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="G4 box; other site"
/db_xref="CDD:206727"
misc_feature complement(1101..1109)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="G5 box; other site"
/db_xref="CDD:206727"
misc_feature complement(828..1046)
/gene="trmE"
/locus_tag="VC0003"
/gene_synonym="mnmE; thdF"
/note="Catalytic cysteine-containing C-terminus of GTPase,
MnmE; Region: GTPase_Cys_C; pfam12631"
/db_xref="CDD:204989"
gene complement(2271..3896)
/locus_tag="VC0004"
/db_xref="GeneID:2615298"
CDS complement(2271..3896)
/locus_tag="VC0004"
/note="functions to insert inner membrane proteins into
the IM in Escherichia coli; interacts with transmembrane
segments; functions in both Sec-dependent and -independent
membrane insertion; similar to Oxa1p in mitochondria"
/codon_start=1
/transl_table=11
/product="inner membrane protein translocase component
YidC"
/protein_id="NP_062588.1"
/db_xref="GI:15640036"
/db_xref="GeneID:2615298"
/translation="MDSQRNILLIALALVSFLLFQQWQVAKNPAPQATQQAQSTGAAP
APSFSDELDPTPAQNVAAKAKTITVSTDVLTLSIDTLGGDVVSAKLNQYSEELNSPES
FVLLQNTQGHQFIAQSGLVGPQGIDVTSNNRPAYQVSADSFTLAEGQDELRIPMTYQA
NGIDYTKTFILKRGSYAVDVVFDVANNSGSEATLGMYAHLRQNLLDSGGNLAMPTYRG
GAYSTSDVRYKKYSFDDMKDRNLSAPNDVTVNWVAMIQHYFASAWIPRDEPQAQLYSR
VINNLGDMGIRTPNKTIANGDKAEFEATLWVGPKLQDQMAATAPNLDLVVDYGWLWFI
AKPLHWLLSVIQTFVGNWGVAIICLTFIVRGAMYPLTKAQYTSMAKMRMLQPKLQAMR
ERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESVELRHSPFF
GWIHDLSAQDPYYILPLLMGASMFVIQKMSPTTITDPMQQKIMTFMPVMFTFFFLWFP
SGLVLYWLVSNIVTLIQQTLIYKALEKKGLHSK"
misc_feature complement(2274..3734)
/locus_tag="VC0004"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:234942"
misc_feature complement(2304..2846)
/locus_tag="VC0004"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:234272"
gene complement(3899..4156)
/locus_tag="VC0005"
/db_xref="GeneID:2612958"
CDS complement(3899..4156)
/locus_tag="VC0005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_062589.1"
/db_xref="GI:15640037"
/db_xref="GeneID:2612958"
/translation="MATPLSPFSWLAIGIVKLYQWFISPLIGPRCRFTPTCSTYAIEA
LRAHGFIKGCWLSTKRLLKCHPLNEGGFDPVPPVQKQDRDK"
misc_feature complement(3932..4135)
/locus_tag="VC0005"
/note="Haemolytic domain; Region: Haemolytic; pfam01809"
/db_xref="CDD:201984"
gene complement(4123..4479)
/gene="rnpA"
/locus_tag="VC0006"
/db_xref="GeneID:2612959"
CDS complement(4123..4479)
/gene="rnpA"
/locus_tag="VC0006"
/EC_number="3.1.26.5"
/note="protein component of RNaseP which catalyzes the
removal of the 5'-leader sequence from pre-tRNA to produce
the mature 5'terminus; this enzyme also cleaves other RNA
substrates"
/codon_start=1
/transl_table=11
/product="ribonuclease P"
/protein_id="NP_062590.1"
/db_xref="GI:15640038"
/db_xref="GeneID:2612959"
/translation="MSTYAFNRELRLLTPEHYQKVFQQAHSAGSPHLTIIARANNLSH
PRLGLAVPKKQIKTAVGRNRFKRICRESFRLHQNQLANKDFVVIAKKSAQDLSNEELF
NLLGKLWQRLSRPSRG"
misc_feature complement(4138..4479)
/gene="rnpA"
/locus_tag="VC0006"
/note="ribonuclease P; Reviewed; Region: rnpA; PRK01732"
/db_xref="CDD:179327"
gene complement(4492..4629)
/gene="rpmH"
/locus_tag="VC0007"
/db_xref="GeneID:2614454"
CDS complement(4492..4629)
/gene="rpmH"
/locus_tag="VC0007"
/note="in Escherichia coli transcription of this gene is
enhanced by polyamines"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L34"
/protein_id="NP_062591.1"
/db_xref="GI:15640039"
/db_xref="GeneID:2614454"
/translation="MSKRTFQPSVLKRKRTHGFRARMATANGRKVLNARRAKGRKRLS
K"
misc_feature complement(4498..4626)
/gene="rpmH"
/locus_tag="VC0007"
/note="50S ribosomal protein L34; Reviewed; Region: rpmH;
PRK00399"
/db_xref="CDD:179004"
gene complement(4871..5608)
/locus_tag="VC0008"
/db_xref="GeneID:2614084"
CDS complement(4871..5608)
/locus_tag="VC0008"
/note="similar to SP:P54954 PID:1408500 GB:AL009126;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter ATP-binding protein"
/protein_id="NP_062592.1"
/db_xref="GI:15640040"
/db_xref="GeneID:2614084"
/translation="MIKLQNIHKRFGTSEVLKGIDLEIQRGEIVVIIGSSGTGKSTLL
RCVNFLEQADQGSIRIDELTVDTQKHTKADVLALRRKTGFVFQNYALFAHLTARQNIA
EALITVRGWKKAQAHQRAQQILDDIGLGDKGDSYPAALSGGQQQRVGIGRAMALQPEL
LLFDEPTSALDPEWVGEVLALMKKLATQHQTMLVVTHEMQFAKEVADRVIFMAEGKIV
EQGSPQDIFDHPQDPRLRKFLNQVGIR"
misc_feature complement(4883..5608)
/locus_tag="VC0008"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:224051"
misc_feature complement(4958..5605)
/locus_tag="VC0008"
/note="ATP-binding cassette domain of the histidine and
glutamine transporters; Region: ABC_HisP_GlnQ; cd03262"
/db_xref="CDD:213229"
misc_feature complement(5486..5509)
/locus_tag="VC0008"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213229"
misc_feature complement(order(5018..5020,5114..5119,5348..5350,
5483..5491,5495..5500))
/locus_tag="VC0008"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213229"
misc_feature complement(5348..5359)
/locus_tag="VC0008"
/note="Q-loop/lid; other site"
/db_xref="CDD:213229"
misc_feature complement(5162..5191)
/locus_tag="VC0008"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213229"
misc_feature complement(5114..5131)
/locus_tag="VC0008"
/note="Walker B; other site"
/db_xref="CDD:213229"
misc_feature complement(5096..5107)
/locus_tag="VC0008"
/note="D-loop; other site"
/db_xref="CDD:213229"
misc_feature complement(5012..5032)
/locus_tag="VC0008"
/note="H-loop/switch region; other site"
/db_xref="CDD:213229"
gene complement(5605..6276)
/locus_tag="VC0009"
/db_xref="GeneID:2615705"
CDS complement(5605..6276)
/locus_tag="VC0009"
/note="similar to PID:1006570 SP:P52625 PID:1006567;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="NP_062593.1"
/db_xref="GI:15640041"
/db_xref="GeneID:2615705"
/translation="MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIR
VFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVIGLTLHF
AAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMI
KSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLN
KAYAR"
misc_feature complement(5656..6222)
/locus_tag="VC0009"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(5656..5658,5665..5670,5677..5682,
5686..5691,5698..5703,5731..5736,5773..5778,5785..5796,
5815..5817,5824..5829,5869..5871,5920..5922,5929..5934,
5944..5946,5950..5955,5962..5964,5968..5970,5974..5979,
6052..6054,6058..6063,6070..6099,6103..6114,6142..6144,
6157..6162,6169..6174))
/locus_tag="VC0009"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(5779..5796,6052..6096))
/locus_tag="VC0009"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(5701..5703,5731..5733,5740..5742,
5776..5778,5992..5994,6052..6054))
/locus_tag="VC0009"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(5848..5850,5860..5865,5881..5919))
/locus_tag="VC0009"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(6354..7100)
/locus_tag="VC0010"
/db_xref="GeneID:2615295"
CDS complement(6354..7100)
/locus_tag="VC0010"
/note="similar to PID:1006570 SP:P52626 PID:1006568;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter substrate-binding
protein"
/protein_id="NP_062594.1"
/db_xref="GI:15640042"
/db_xref="GeneID:2615295"
/translation="MKHWFNIALAALALSSATVQAATEVKVGMSGRYFPFTFVKQDEL
QGFEVDVWNEIGKRNDYKVEFVTANFSGLLGLLETGRIDTISNQITITDARKAKYLFS
DPYVIDGAQITVRKGNEAIKGIDDLAGKTVAVNLGSNFEQLLRNHDKDGKINIKTYDT
GIEHDVALGRADAFVMDRLSALELIEKTGLPLQLAGSPFETIENAWPFVNNEKGQQLQ
GEVNKALAAMRADGTLSQIALKWFGTDISQ"
misc_feature complement(6369..7028)
/locus_tag="VC0010"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:215950"
misc_feature complement(6375..7028)
/locus_tag="VC0010"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature complement(order(6570..6572,6684..6686,6816..6818,
6891..6893,7002..7004))
/locus_tag="VC0010"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature complement(order(6591..6593,6609..6611))
/locus_tag="VC0010"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature complement(6480..6497)
/locus_tag="VC0010"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene 7397..8815
/gene="dnaA"
/locus_tag="VC0012"
/db_xref="GeneID:2614412"
CDS 7397..8815
/gene="dnaA"
/locus_tag="VC0012"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosome replication initiator DnaA"
/protein_id="NP_062596.1"
/db_xref="GI:15640044"
/db_xref="GeneID:2614412"
/translation="MSEGIVSSSLWLQCLQRLQEELPAAEFSMWVRPLQAELNDNTLT
LFAPNRFVLDWVRDKYLNNINRLLMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAADV
AAESSAPAQLAQRKPIHKTWDDDSAAADITHRSNVNPKHKFNNFVEGKSNQLGLAAAR
QVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKA
LQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRY
PKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLPDEVAFFIAKRL
RSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYY
KIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIE
QLREESHDIKEDYSNLIRTLSS"
misc_feature 7418..8812
/gene="dnaA"
/locus_tag="VC0012"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 7418..7606
/gene="dnaA"
/locus_tag="VC0012"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 7850..8281
/gene="dnaA"
/locus_tag="VC0012"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 7925..7948
/gene="dnaA"
/locus_tag="VC0012"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(7928..7951,8114..8116,8216..8218)
/gene="dnaA"
/locus_tag="VC0012"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature <8093..8503
/gene="dnaA"
/locus_tag="VC0012"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 8102..8119
/gene="dnaA"
/locus_tag="VC0012"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 8252..8254
/gene="dnaA"
/locus_tag="VC0012"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 8537..8806
/gene="dnaA"
/locus_tag="VC0012"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(8606..8608,8630..8635,8654..8656,8672..8680,
8705..8719,8726..8728,8735..8740)
/gene="dnaA"
/locus_tag="VC0012"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 8873..9973
/locus_tag="VC0013"
/db_xref="GeneID:2615703"
CDS 8873..9973
/locus_tag="VC0013"
/EC_number="2.7.7.7"
/note="binds the polymerase to DNA and acts as a sliding
clamp"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="NP_062597.1"
/db_xref="GI:15640045"
/db_xref="GeneID:2615703"
/translation="MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSM
TATDLEVELISRVTLEGEFEAGSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSG
RSRFSLATLPASDFPNIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLF
EIDGTTLRSVATDGHRMAVAQAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQI
GHSNLRAEVNHFVFTSKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNE
KFRGVRVNLADNGMRITANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCD
NVRVSMSDANASALVENVDDDSAMYVVMPIRL"
misc_feature 8873..9970
/locus_tag="VC0013"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:235541"
misc_feature 8873..9967
/locus_tag="VC0013"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:238082"
misc_feature order(8942..8944,9089..9091,9110..9112,9464..9466)
/locus_tag="VC0013"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:238082"
misc_feature order(9092..9094,9101..9103,9179..9181,9185..9187,
9686..9688,9779..9784)
/locus_tag="VC0013"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238082"
misc_feature order(9386..9388,9392..9403,9830..9832,9956..9967)
/locus_tag="VC0013"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:238082"
misc_feature order(9386..9388,9392..9397,9611..9613,9716..9718,
9755..9760,9839..9841,9956..9967)
/locus_tag="VC0013"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:238082"
gene 9991..11082
/gene="recF"
/locus_tag="VC0014"
/db_xref="GeneID:2615704"
CDS 9991..11082
/gene="recF"
/locus_tag="VC0014"
/note="'Required for DNA replication; binds preferentially
to single-stranded, linear DNA'"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="NP_062598.1"
/db_xref="GI:15640046"
/db_xref="GeneID:2615704"
/translation="MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIY
LLGHGRSFKSSLTGRIIQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKI
GGQTGQKLAQLAQILPLQLIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFK
RLSKQRNALLKSAQSYRELSYWDQELARLAEQIDQWRESYVNQLKNVAEQLCRTFLPE
FDIDLKYYRGWEKDQPYQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVLSR
GQLKLMVCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFV
SSITESQVADMLDESSKTFHVAHGVIEQG"
misc_feature 9991..11076
/gene="recF"
/locus_tag="VC0014"
/note="Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair]; Region:
RecF; COG1195"
/db_xref="CDD:224116"
misc_feature 9997..>10503
/gene="recF"
/locus_tag="VC0014"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 10078..10101
/gene="recF"
/locus_tag="VC0014"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(10087..10092,10096..10104,10360..10362)
/gene="recF"
/locus_tag="VC0014"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 10351..10362
/gene="recF"
/locus_tag="VC0014"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature <10693..11073
/gene="recF"
/locus_tag="VC0014"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 10810..10839
/gene="recF"
/locus_tag="VC0014"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 10897..10914
/gene="recF"
/locus_tag="VC0014"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 10921..10932
/gene="recF"
/locus_tag="VC0014"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 10990..11010
/gene="recF"
/locus_tag="VC0014"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 11103..13520
/gene="gyrB"
/locus_tag="VC0015"
/db_xref="GeneID:2615137"
CDS 11103..13520
/gene="gyrB"
/locus_tag="VC0015"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="NP_229675.2"
/db_xref="GI:471237023"
/db_xref="GeneID:2615137"
/translation="MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
DNSIDEALAGYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGG
KFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET
ERTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMY
EGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQ
RDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFS
SQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREM
TRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK
ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIR
TLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAE
LHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADK
AAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKIQVRTHGVTHEYLLSADL
INSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRY
KGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNAL
KVANLDV"
misc_feature 11103..13517
/gene="gyrB"
/locus_tag="VC0015"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:237860"
misc_feature 11208..>11357
/gene="gyrB"
/locus_tag="VC0015"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature 11238..11240
/gene="gyrB"
/locus_tag="VC0015"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(11325..11327,11331..11333)
/gene="gyrB"
/locus_tag="VC0015"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 11760..12236
/gene="gyrB"
/locus_tag="VC0015"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:238419"
misc_feature 11916..11918
/gene="gyrB"
/locus_tag="VC0015"
/note="anchoring element; other site"
/db_xref="CDD:238419"
misc_feature order(12090..12092,12099..12104,12108..12110)
/gene="gyrB"
/locus_tag="VC0015"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238419"
misc_feature order(12108..12110,12114..12116)
/gene="gyrB"
/locus_tag="VC0015"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238419"
misc_feature 12357..12701
/gene="gyrB"
/locus_tag="VC0015"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(12375..12380,12387..12389,12597..12599,12603..12605,
12609..12611)
/gene="gyrB"
/locus_tag="VC0015"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(12375..12377,12597..12599)
/gene="gyrB"
/locus_tag="VC0015"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 13290..13484
/gene="gyrB"
/locus_tag="VC0015"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 14377..14493
/locus_tag="VC0017"
/db_xref="GeneID:2614874"
CDS 14377..14493
/locus_tag="VC0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229676.1"
/db_xref="GI:15640049"
/db_xref="GeneID:2614874"
/translation="MSKQEMKKPQLSLKEKRKLKQEKAQESSVIKPRKSKGR"
gene 14769..15206
/locus_tag="VC0018"
/db_xref="GeneID:2614875"
CDS 14769..15206
/locus_tag="VC0018"
/note="similar to GB:L10328 SP:P29209 GB:M94104 PID:147369
PID:290536; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="16 kDa heat shock protein A"
/protein_id="NP_229677.1"
/db_xref="GI:15640050"
/db_xref="GeneID:2614875"
/translation="MRTVDFTPLYRNAIGFDRLLNMMENSAAKNAQGGYPPYNIEQKE
DNQYRITMAVAGFGDEEIDITQQENTLIVRGERKPEESKNYIYQGIAERDFERKFQLA
DYVKVTGATMEHGLLHIDLEREIPEAMQPRKIAINGKHLLENK"
misc_feature 14769..15179
/locus_tag="VC0018"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:223149"
misc_feature 14874..15137
/locus_tag="VC0018"
/note="Alpha-crystallin domain (ACD) found in Escherichia
coli inclusion body-associated proteins IbpA and IbpB, and
similar proteins. IbpA and IbpB are 16 kDa small heat
shock proteins (sHsps). sHsps are molecular chaperones
that suppress protein aggregation...; Region:
ACD_IbpA-B_like; cd06470"
/db_xref="CDD:107227"
misc_feature order(14880..14894,14919..14921,14925..14927,14931..14936,
15057..15059,15111..15116)
/locus_tag="VC0018"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107227"
gene complement(15294..16550)
/gene="avtA"
/locus_tag="VC0019"
/db_xref="GeneID:2614962"
CDS complement(15294..16550)
/gene="avtA"
/locus_tag="VC0019"
/EC_number="2.6.1.66"
/note="'transaminase C; catalyzes transamination of
alanine, valine, and 2-aminobutyrate with their respective
2-keto acids; also catalyzes terminal step in valine
biosynthesis'"
/codon_start=1
/transl_table=11
/product="valine--pyruvate transaminase"
/protein_id="NP_229678.1"
/db_xref="GI:15640051"
/db_xref="GeneID:2614962"
/translation="MQYSSFGEKFNRYSGITQLMDDLNDGLRTPGAIMLGGGNPAAIP
AMLDYFHNTSAEMLADGSLLNAMTNYDGPQGKDVFVKSLATLLRETYGWNISEKNITL
TNGSQSGFFYLFNLFAGKQPDGAHKKILLPLAPEYIGYGDAGIDDDIFVSYRPEIELL
DQGLFKYHVDFSELKVDESVAAICVSRPTNPTGNVLTEEEIHKLDQLARDNGVPLIID
NAYGVPFPNIIFEDIEPFWNDNTILCMSLSKLGLPGLRCGIVIANEAVTQALTNMNGI
ISLAPGSMGPALVQRMIEKGDLLRLSEQVIKPFYRQKAQHAVELLQSAITDPRFRIHK
PEGAIFLWLWFDELPITTMELYQRLKARGVLIVPGEYFFIGQPQEWPHAHECLRMNYV
QNEQAMEQGIAIIAEEVQKAYQQANV"
misc_feature complement(15303..16550)
/gene="avtA"
/locus_tag="VC0019"
/note="valine--pyruvate transaminase; Provisional; Region:
avtA; PRK09440"
/db_xref="CDD:236517"
misc_feature complement(15330..16388)
/gene="avtA"
/locus_tag="VC0019"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(15783..15785,15804..15809,15813..15815,
15888..15890,15981..15983,16101..16103,16230..16238))
/gene="avtA"
/locus_tag="VC0019"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(15675..15677,15684..15686,15783..15791,
15909..15911,16227..16229))
/gene="avtA"
/locus_tag="VC0019"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(15804..15806)
/gene="avtA"
/locus_tag="VC0019"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene complement(16869..18935)
/gene="glyS"
/locus_tag="VC0020"
/db_xref="GeneID:2614960"
CDS complement(16869..18935)
/gene="glyS"
/locus_tag="VC0020"
/EC_number="6.1.1.14"
/note="glycine--tRNA ligase beta chain; glyS; class II
aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2);
catalyzes a two-step reaction; first charging a glycine
molecule by linking the carboxyl group to the
alpha-phosphate of ATP; second by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="glycyl-tRNA synthetase subunit beta"
/protein_id="NP_229679.1"
/db_xref="GI:15640052"
/db_xref="GeneID:2614960"
/translation="MAKEFLIELGTEELPPKQLRTLAEAFAANFAAELATADIAHEGV
TWFATPRRLALKVANLAESQPDRVVEKRGPAVNVAFDADGKPTKAAEGWARGNGITVE
QAERLVTDKGEWLLFKEQVQGQQTASVVVEMAAKALANLPIAKPMRWGDKETQFIRPV
KTLTILFGSELIQGEILGVASARTLRGHRFMGEAEFTIESAEQYPAILEERGKVIADY
ATRKAMIIEGSQQAAQQLGGIADLEDALVEEVTSLVEWPVVMTAKFEEKFLKVPAEAL
VYTMKGDQKYFPVYDASKKLLPNFIFVSNIESKEPRHIVEGNEKVVRPRLADAEFFFN
TDRKRPLVDRLPLLENAIFQQQLGTIKDKTDRITELAGYIAEQIGADVEKSKRAGLLA
KCDLMTSMVFEFTDTQGVMGMHYARHDGEAEEVAVALNEQYMPRFAGDELPSRGVSAA
VAMADKLDTIVGIFGIGQAPKGSDPFALRRASLGVLRILVEYGYQLDLVDLIAKAKSL
FGDRLTNANVEQEVIEFMLGRFPTWYQDAGFSIDIIQAVLARNPTKPADFDQRVKAVS
HFRALEEAEALAAANKRVGNILAKYDGELGEEIDLALLQEDAEKALAEAVEIMAEALE
PAFATGNYQEALSKLAGLRAPVDAFFDNVMVMADDEALKKNRLTLLNKLRNLFLQIAD
ISLLQK"
misc_feature complement(16872..18932)
/gene="glyS"
/locus_tag="VC0020"
/note="glycyl-tRNA synthetase subunit beta; Validated;
Region: glyS; PRK01233"
/db_xref="CDD:234925"
misc_feature complement(<16956..17192)
/gene="glyS"
/locus_tag="VC0020"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:245839"
STS 17438..18199
/standard_name="ha2331"
/db_xref="UniSTS:515525"
gene complement(18950..19867)
/gene="glyQ"
/locus_tag="VC0021"
/db_xref="GeneID:2614961"
CDS complement(18950..19867)
/gene="glyQ"
/locus_tag="VC0021"
/EC_number="6.1.1.14"
/note="glycine--tRNA ligase alpha chain; GlyRS; class II
aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2);
catalyzes a two-step reaction; first charging a glycine
molecule by linking its carboxyl group to the
alpha-phosphate of ATP; second by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="glycyl-tRNA synthetase subunit alpha"
/protein_id="NP_229680.2"
/db_xref="GI:471237024"
/db_xref="GeneID:2614961"
/translation="MQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMT
CLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSL
RVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
GEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDF
LFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRI
RNLTKSVAEAYYASREALGFPMCKKSEQK"
misc_feature complement(18992..19846)
/gene="glyQ"
/locus_tag="VC0021"
/note="Class II Glycyl-tRNA synthetase (GlyRS) alpha
subunit core catalytic domain. GlyRS functions as a
homodimer in eukaryotes, archaea and some bacteria and as
a heterotetramer in the remainder of prokaryotes and in
arabidopsis. It is responsible for the...; Region:
GlyRS_alpha_core; cd00733"
/db_xref="CDD:238375"
misc_feature complement(order(19118..19120,19130..19132,19139..19150,
19154..19156,19166..19168,19175..19177,19184..19186,
19193..19195,19202..19207,19214..19216,19223..19225,
19229..19231,19250..19255,19262..19264,19313..19315,
19631..19633,19679..19681,19691..19693,19718..19720,
19766..19777,19781..19783,19787..19792,19814..19816,
19826..19828,19838..19840))
/gene="glyQ"
/locus_tag="VC0021"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238375"
misc_feature complement(19772..19795)
/gene="glyQ"
/locus_tag="VC0021"
/note="motif 1; other site"
/db_xref="CDD:238375"
misc_feature complement(order(19361..19366,19370..19375,19379..19384,
19430..19432,19442..19447,19610..19618,19622..19624,
19628..19630,19676..19678,19751..19753,19757..19759))
/gene="glyQ"
/locus_tag="VC0021"
/note="active site"
/db_xref="CDD:238375"
misc_feature complement(19670..19681)
/gene="glyQ"
/locus_tag="VC0021"
/note="motif 2; other site"
/db_xref="CDD:238375"
misc_feature complement(19361..19372)
/gene="glyQ"
/locus_tag="VC0021"
/note="motif 3; other site"
/db_xref="CDD:238375"
gene 20235..20837
/locus_tag="VC0022"
/db_xref="GeneID:2614959"
CDS 20235..20837
/locus_tag="VC0022"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229681.1"
/db_xref="GI:15640054"
/db_xref="GeneID:2614959"
/translation="MFVYGSIINPCPTEHVMSVLAISITTVALAEIGDKTQLLSLLLA
SRYRKPIPIIAAIFLATLANHALAAWLGVVVADYLSPDILKWVLVVSFLAMAGWILIP
DKLDGEESISTRGPFVASFIAFFMAEIGDKTQIATSILGAQYADALSWVIVGTTLGML
LANVPVVLIGKLSADKMPLGLIRKVTAGLFLLMALATAFF"
misc_feature 20283..20792
/locus_tag="VC0022"
/note="Predicted membrane protein [Function unknown];
Region: COG2119"
/db_xref="CDD:32302"
misc_feature 20292..20522
/locus_tag="VC0022"
/note="Uncharacterized protein family UPF0016; Region:
UPF0016; pfam01169"
/db_xref="CDD:201637"
misc_feature 20583..20789
/locus_tag="VC0022"
/note="Uncharacterized protein family UPF0016; Region:
UPF0016; pfam01169"
/db_xref="CDD:201637"
gene 20943..21200
/locus_tag="VC0023"
/db_xref="GeneID:2614868"
CDS 20943..21200
/locus_tag="VC0023"
/note="similar to GP:3603110; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit II-like protein"
/protein_id="NP_229682.1"
/db_xref="GI:15640055"
/db_xref="GeneID:2614868"
/translation="MLTRYMGMTPKSQSYLFSFGLVLTLLGMALTDLWMPMVVGAIVM
TALAVESWIRVAHIIPLHDEVRTLQKQLNRLQAELRNLEEE"
misc_feature <21102..21197
/locus_tag="VC0023"
/note="basic leucine zipper DNA-binding and
multimerization region of GCN4 and related proteins;
Region: B_zip1; cl02576"
/db_xref="CDD:243100"
gene complement(21287..21535)
/locus_tag="VC0024"
/db_xref="GeneID:2614869"
CDS complement(21287..21535)
/locus_tag="VC0024"
/note="TusA; transfers sulfur to TusBCD complex; involved
in thiouridation of U34 position of some tRNAs"
/codon_start=1
/transl_table=11
/product="sulfur transfer protein SirA"
/protein_id="NP_229683.1"
/db_xref="GI:15640056"
/db_xref="GeneID:2614869"
/translation="MTFNPNIATHTLEAEGLRCPEPVMMVRKTIRTMLDGEVLLVTAD
DPSTTRDIPSFCRFMDHQLLGAQIDQLPYQYLIKKGLA"
misc_feature complement(21299..21505)
/locus_tag="VC0024"
/note="SirA (also known as UvrY, and YhhP) belongs to a
family of two-component response regulators that controls
secondary metabolism and virulence. The other member of
this two-component system is a sensor kinase called BarA
which phosphorylates SirA. A...; Region: SirA; cd03423"
/db_xref="CDD:239515"
misc_feature complement(order(21464..21466,21470..21481,21488..21490,
21497..21502))
/locus_tag="VC0024"
/note="CPxP motif; other site"
/db_xref="CDD:239515"
gene 21656..21856
/locus_tag="VC0025"
/db_xref="GeneID:2614861"
CDS 21656..21856
/locus_tag="VC0025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229684.1"
/db_xref="GI:15640057"
/db_xref="GeneID:2614861"
/translation="MSEGMMLTTLDRLTIYAVLCFISLCALGLGETTQAQLMPVLGTA
ASIFGIWLEMRSEQDTTQQPHR"
gene complement(22028..23008)
/locus_tag="VC0026"
/db_xref="GeneID:2614460"
CDS complement(22028..23008)
/locus_tag="VC0026"
/note="similar to GB:M80458 SP:P26646 PID:145173
PID:606193 GB:U00096; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="zinc-binding alcohol dehydrogenase"
/protein_id="NP_229685.1"
/db_xref="GI:15640058"
/db_xref="GeneID:2614460"
/translation="MFNALLLTQQDKITHATVTQINDDQLPAGNVTVAVNYSSLNYKD
GLAITGKGKIIREFPMVPGIDFAGTVLESADARYQVGDAVVLTGWGVGENHWGGMAQK
ARLNADWLVKLPQGLTSQQAMMIGTAGFTAMLCVQALIDGGIKPEDGEILVTGASGGV
GSVAVTLLAQLGYKVVAVTGRVAQNGPLLEQLGASRVIDRQEFSEASRPLEKQLWVGA
VDTVGSKVLAKVLAQMHYNGVVAACGLAGGFDLPTTVMPFILRNVRLQGVDSVSCPVE
KRLAAWKKLAELLPASYYAQACHEISLSQVPEYAEAITNGQVTGRVVVKL"
misc_feature complement(22037..23005)
/locus_tag="VC0026"
/note="Yhdh putative quinone oxidoreductases; Region:
MDR_yhdh; cd08288"
/db_xref="CDD:176248"
misc_feature complement(22031..23002)
/locus_tag="VC0026"
/note="putative quinone oxidoreductase, YhdH/YhfP family;
Region: oxido_YhdH; TIGR02823"
/db_xref="CDD:234026"
misc_feature complement(order(22055..22057,22061..22063,22070..22072,
22196..22207,22268..22282,22343..22348,22409..22411,
22466..22474,22529..22540,22544..22546,22616..22618,
22625..22630,22883..22888))
/locus_tag="VC0026"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:176248"
misc_feature complement(order(22190..22195,22202..22225,22229..22237,
22241..22252,22256..22258,22274..22285,22301..22303,
22382..22384))
/locus_tag="VC0026"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176248"
gene complement(23256..24788)
/locus_tag="VC0027"
/db_xref="GeneID:2614461"
CDS complement(23256..24788)
/locus_tag="VC0027"
/EC_number="4.3.1.19"
/note="'threonine deaminase; threonine dehydratase; in
Escherichia coli, IlvA is part of the isoleucine
biosynthetic pathway'"
/codon_start=1
/transl_table=11
/product="threonine dehydratase"
/protein_id="NP_229686.1"
/db_xref="GI:15640059"
/db_xref="GeneID:2614461"
/translation="MGLTNQTGAEYLRQILRSPVYEVANVTPLQTMPRLSARIGNQVQ
IKREDRQPVHSFKLRGAYNMVSHLTEAQKAAGVIAASAGNHAQGMALSGTKLGIKTTI
VMPRTTPDIKVEAVRGFGGEVLLHGSNFDEAKAEAERLSKEQGYTFVPPFDHPLVIAG
QGTIGMEMLQQNGHLDYIFVPVGGGGLAAGVAVLVKQLMPEIQVIAVEPEDSACLKAA
LDAGKPVVLDQVSMFADGVAVKRIGDETFRLCQQYIDGHVTVSSDEICAAVKDIFEDT
RAIAEPSGALALAGLKKFAEQQQLKGKQLGTVLSGANTNFHGLRYVSERCELGEKREG
LLAVTIPERKGAFFDFCQIIGNRAVTEFNYRYNDDQLANIFVGVRLVGGPDELKSIIH
ELRQSGYPVQDLSDDEMAKLHIRYMIGGRPSKPLTERLYSFEFPEYPGALLKFLSMLG
THWNISLFNYRNHGADYGRVLCGFELDTPDLVRFSEHLVELGYRYKDETDNPAYRFFL
AK"
misc_feature complement(23262..24770)
/locus_tag="VC0027"
/note="threonine dehydratase; Reviewed; Region: PRK09224"
/db_xref="CDD:236417"
misc_feature complement(23844..24755)
/locus_tag="VC0027"
/note="Threonine dehydratase: The first step in amino acid
degradation is the removal of nitrogen. Although the
nitrogen atoms of most amino acids are transferred to
alpha-ketoglutarate before removal, the alpha-amino group
of threonine can be directly...; Region: Thr-dehyd;
cd01562"
/db_xref="CDD:107205"
misc_feature complement(order(23844..23855,23952..23960,23970..23972,
23979..23984,23991..23993,24198..24203,24639..24644,
24729..24734,24741..24743,24750..24755))
/locus_tag="VC0027"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:107205"
misc_feature complement(order(23859..23861,24228..24242,24537..24539,
24618..24620))
/locus_tag="VC0027"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107205"
misc_feature complement(24618..24620)
/locus_tag="VC0027"
/note="catalytic residue [active]"
/db_xref="CDD:107205"
misc_feature complement(23538..23792)
/locus_tag="VC0027"
/note="First of two tandem C-terminal ACT domains of
threonine dehydratase I (ThrD-I; L-threonine hydrolyase);
Region: ACT_ThrD-I_1; cd04906"
/db_xref="CDD:153178"
misc_feature complement(23739..23756)
/locus_tag="VC0027"
/note="putative Ile/Val binding site [chemical binding];
other site"
/db_xref="CDD:153178"
misc_feature complement(23265..23507)
/locus_tag="VC0027"
/note="Second of two tandem C-terminal ACT domains of
threonine dehydratase I (ThrD-I; L-threonine hydrolyase);
Region: ACT_ThrD-I_2; cd04907"
/db_xref="CDD:153179"
misc_feature complement(23454..23471)
/locus_tag="VC0027"
/note="putative Ile/Val binding site [chemical binding];
other site"
/db_xref="CDD:153179"
gene complement(24792..26633)
/locus_tag="VC0028"
/db_xref="GeneID:2612960"
CDS complement(24792..26633)
/locus_tag="VC0028"
/EC_number="4.2.1.9"
/note="'catalyzes the dehydration of
2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate
in valine and isoleucine biosynthesis'"
/codon_start=1
/transl_table=11
/product="dihydroxy-acid dehydratase"
/protein_id="NP_229687.1"
/db_xref="GI:15640060"
/db_xref="GeneID:2612960"
/translation="MPKYRSATTTHGRNMAGARALWRATGVKEEDFGKPIIAVVNSFT
QFVPGHVHLKDLGQLVAREIEAAGGIAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPAIFVSGGPMEAGKTKLSDQII
KLDLVDAMMQGADPKVSDAQSEQIERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
GSLLATHADRKQLFLTAGQRIVELTKRYYEQDDASVLPRNIANKAAFENAIALDIAMG
GSTNTVLHLLAAAQEGEVEFDMTDIDRMSRQVPHLCKVAPSTQKYHMEDVHRAGGVMG
ILGELQRAGLLKDQTRTVLGISLQEQLAQYDVKQTQDPAVHTMFRAGPAGIRTTQAFS
QDCRWDTLDDDRQEGCIRDKAHAFSQDGGLAVLKGNLAIDGCIVKTAGVDESILKFRG
PAVVYESQEDAVNGILGGQVKAGDVVVIRYEGPKGGPGMQEMLYPTTYLKSMGLGKQC
ALLTDGRFSGGTSGLSIGHASPEAANGGTIGLVRSGDSIAIDIPNRSITLEVSESELA
ARRAEQDKLGWKPVDRQRTVSLALKAYASMATSADKGAVRDKSKLEG"
misc_feature complement(24795..26630)
/locus_tag="VC0028"
/note="dihydroxy-acid dehydratase; Provisional; Region:
PRK12448"
/db_xref="CDD:237104"
gene complement(26643..27602)
/locus_tag="VC0029"
/db_xref="GeneID:2614456"
CDS complement(26643..27602)
/locus_tag="VC0029"
/EC_number="2.6.1.42"
/note="catalyzes the transamination of the branched-chain
amino acids to their respective alpha-keto acids"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid aminotransferase"
/protein_id="NP_229688.1"
/db_xref="GI:15640061"
/db_xref="GeneID:2614456"
/translation="MRIRKAIMATKTADYIWFNGEMIPWANATVHVLTHAMHYGTSVF
EGVRCYNTPKGPIIFRHREHAQRLLDSAKIYRFPIPYSIETIMEATRETLRVNKLDNA
YIRPLAYVGNVGLGVCPPVGTEMDLMIAAFPWGAYLGEEALENGVDAMVSSWHRAAPN
TIPTAAKAGGNYLSSLLVGGEARRHGYAEGIALSVDGYLSEGAGENIFVVKNGVILTP
PTTSSILPGITRDSIMTLARDMGYEVREANISREALYLADEIFMTGTAAEVVPVRSVD
KITVGAGKRGPITKVVQDAYFGLFKGTTEDKWGWLDYVYPAAK"
misc_feature complement(26697..27518)
/locus_tag="VC0029"
/note="BCAT_beta_family: Branched-chain aminotransferase
catalyses the transamination of the branched-chain amino
acids leusine, isoleucine and valine to their respective
alpha-keto acids, alpha-ketoisocaproate,
alpha-keto-beta-methylvalerate and...; Region:
BCAT_beta_family; cd01557"
/db_xref="CDD:29568"
misc_feature complement(order(27063..27065,27075..27077,27081..27083,
27096..27098,27219..27221,27246..27248,27258..27266,
27282..27284,27288..27290,27381..27383,27471..27473,
27477..27479,27483..27497,27504..27518))
/locus_tag="VC0029"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29568"
misc_feature complement(order(26808..26810,26916..26921,27000..27002,
27087..27089,27102..27104,27252..27254,27402..27404,
27471..27473,27486..27488))
/locus_tag="VC0029"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:29568"
misc_feature complement(27102..27104)
/locus_tag="VC0029"
/note="catalytic residue [active]"
/db_xref="CDD:29568"
gene complement(27593..27877)
/gene="ilvM"
/locus_tag="VC0030"
/db_xref="GeneID:2614457"
CDS complement(27593..27877)
/gene="ilvM"
/locus_tag="VC0030"
/EC_number="2.2.1.6"
/note="similar to GB:M87049 SP:P13048 GB:X02413 GB:X04890
PID:146459; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="acetolactate synthase 2 regulatory subunit"
/protein_id="NP_229689.1"
/db_xref="GI:15640062"
/db_xref="GeneID:2614457"
/translation="MQRYLLDIKADDKPVLLERVLRVTRHRGFVIKQVAATQNHASKI
ASVEIIVDSDRPITTLTNQIEKLWDVRTVEVTAIRNDELPNNNLQQKICA"
misc_feature complement(27596..27877)
/gene="ilvM"
/locus_tag="VC0030"
/note="Acetolactate synthase (isozyme II), small
(regulatory) subunit [Function unknown]; Region: COG3978"
/db_xref="CDD:226486"
gene complement(27889..29535)
/locus_tag="VC0031"
/db_xref="GeneID:2614464"
CDS complement(27889..29535)
/locus_tag="VC0031"
/EC_number="2.2.1.6"
/note="catalyzes the formation of 2-acetolactate from
pyruvate; also known as acetolactate synthase large
subunit"
/codon_start=1
/transl_table=11
/product="acetolactate synthase 2 catalytic subunit"
/protein_id="NP_229690.1"
/db_xref="GI:15640063"
/db_xref="GeneID:2614464"
/translation="MTGAQLVVAALKQQGIKTVFGYPGGAIMPIYDALYDGGVEHILC
RHEQGAAMAAIGMARSTQKVAVCMATSGPGATNLVTGLADAFLDSVPLVAITGQVASS
HIGTDAFQEMDVIGMSLSCTKHSYLVTDINELAPTLAEAFEVAQTGRPGPVLVDIAKD
VQLGKAPVSALPSFTPPAMPHVDATHLANAQALLAQSKRPVLYVGGGVQLANATDTVR
EFLRLNPMPSVSTLKGLGTIERHDPHYLGMLGMHGTKAANLIVQECDLLIAVGARFDD
RVTGKLDTFAPHAKVIHVDIDAAEFNKLRHAHAALRGDINLILPQLELSHDISPWVHH
SESLRSGFKWRYDHPGDNIFAPLLLKQLSDMMPDSSIVSTDVGQHQMWAAQHIQPRAP
QNFISSAGLGTMGFGLPAAMGAAVARPDDQSILISGDGSFMMNVQELGTLKRRQIPVK
MVLLDNQRLGMVRQWQSLFFDGRHSETILDDNPDFVMLAKAFNIPGKTISRKEEVEPA
LREMLASKTAYLLHVLIDEEENVWPLVPPGASNTDMLENT"
misc_feature complement(27892..29535)
/locus_tag="VC0031"
/note="acetolactate synthase 2 catalytic subunit;
Reviewed; Region: PRK08978"
/db_xref="CDD:181601"
misc_feature complement(29059..29523)
/locus_tag="VC0031"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature complement(order(29272..29277,29284..29286,29296..29298,
29317..29319,29353..29361,29365..29370,29377..29382,
29389..29391,29398..29418,29440..29442,29452..29454,
29464..29469,29482..29484))
/locus_tag="VC0031"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(order(29176..29178,29185..29187,29287..29289,
29296..29301,29305..29310,29317..29319,29392..29394,
29398..29409,29413..29415,29440..29442,29452..29454,
29461..29469))
/locus_tag="VC0031"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(order(29305..29307,29317..29319,29395..29397,
29467..29469))
/locus_tag="VC0031"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(28570..28977)
/locus_tag="VC0031"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:215786"
misc_feature complement(27922..28464)
/locus_tag="VC0031"
/note="Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the condensation
of two molecules of pyruvate to give the...; Region:
TPP_AHAS; cd02015"
/db_xref="CDD:238973"
misc_feature complement(order(28168..28170,28234..28236,28243..28251,
28324..28326,28330..28332,28399..28410))
/locus_tag="VC0031"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:238973"
misc_feature complement(order(28063..28065,28072..28074,28084..28089,
28204..28206,28225..28230,28234..28239,28324..28326,
28330..28332,28339..28341))
/locus_tag="VC0031"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238973"
gene 30069..31592
/locus_tag="VC0032"
/db_xref="GeneID:2614466"
CDS 30069..31592
/locus_tag="VC0032"
/note="similar to GB:L42023 SP:P45049 PID:1006428
PID:1221236 PID:1205364; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="ComM-like protein"
/protein_id="NP_229691.1"
/db_xref="GI:15640064"
/db_xref="GeneID:2614466"
/translation="MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKE
SRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGRFDLPIALGILAASDQIARNKLE
SYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQTRDLQDIIGQQQGKRALEIAAAGNHNLLFLG
PPGTGKTMLASRLCDLLPEMSDEEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSM
AALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLESGEIVISRAQGKTR
FPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKG
TLANGGDRGESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLES
ALHRLGLSIRAYHRIIKVARTIADLQGEAQIARPHLAEALGYRAMDRLLKQLSAQNV"
misc_feature 30111..31562
/locus_tag="VC0032"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:223679"
misc_feature 30129..30494
/locus_tag="VC0032"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature 30651..31229
/locus_tag="VC0032"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 30720..30743
/locus_tag="VC0032"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(30723..30746,30972..30974,31104..31106)
/locus_tag="VC0032"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 30960..30977
/locus_tag="VC0032"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 31203..31205
/locus_tag="VC0032"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 31266..31547
/locus_tag="VC0032"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:222052"
gene 31682..32566
/locus_tag="VC0033"
/db_xref="GeneID:2614467"
CDS 31682..32566
/locus_tag="VC0033"
/codon_start=1
/transl_table=11
/product="acyltransferase"
/protein_id="NP_229692.1"
/db_xref="GI:15640065"
/db_xref="GeneID:2614467"
/translation="MLAYLLLTLNVTVVVLNSAFHSLLICLIALIKLLLPSAAWKAQA
TQAANWVMWSWASVNAWVLQLSNRVEWDIQGGETLTKQGWYLLISNHLSWTDIVVLCC
VFKDRIPMPKFFLKQQLLYVPFIGMACWALDMPFMRRYSREYLLRHPHKRGQDLATTR
RSCEKFRAVPTTVVNYVEGTRFNTQKQQRSGVGYQHVLQPKTGGIAYTLAAMGEQFEH
IIDVTLAYPDNRQQPFRDLLMGRMQRIVVHIDLLPVDEQVQGDYFNDKQFKRQFQLWL
SEVWQRKDQRLEQIYKAD"
misc_feature 31826..32530
/locus_tag="VC0033"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:223282"
misc_feature 31862..32431
/locus_tag="VC0033"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LCLAT1-like; Region:
LPLAT_LCLAT1-like; cd07990"
/db_xref="CDD:153252"
misc_feature order(31952..31954,31961..31963,31967..31969,32024..32035,
32216..32224)
/locus_tag="VC0033"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153252"
gene complement(32644..33246)
/locus_tag="VC0034"
/db_xref="GeneID:2614468"
CDS complement(32644..33246)
/locus_tag="VC0034"
/note="similar to GB:M93713 SP:P32557 GB:X64725 PID:155287
PID:48354; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="thiol:disulfide interchange protein"
/protein_id="NP_229693.1"
/db_xref="GI:15640066"
/db_xref="GeneID:2614468"
/translation="MKKLFALVATLMLSVSAYAAQFKEGEHYQVLKTPASSSPVVNEF
FSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVED
KMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQ
DSGLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVNYLLTLK"
misc_feature complement(32662..33177)
/locus_tag="VC0034"
/note="DsbA family, DsbA subfamily; DsbA is a monomeric
thiol disulfide oxidoreductase protein containing a redox
active CXXC motif imbedded in a TRX fold. It is involved
in the oxidative protein folding pathway in prokaryotes,
and is the strongest thiol...; Region: DsbA_DsbA; cd03019"
/db_xref="CDD:239317"
misc_feature complement(32674..33129)
/locus_tag="VC0034"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:216433"
misc_feature complement(order(32743..32745,33091..33096,33100..33102))
/locus_tag="VC0034"
/note="catalytic residues [active]"
/db_xref="CDD:239317"
misc_feature complement(33004..33012)
/locus_tag="VC0034"
/note="hinge region; other site"
/db_xref="CDD:239317"
misc_feature complement(order(32809..32838,32854..32880,32890..32949,
32962..32988))
/locus_tag="VC0034"
/note="alpha helical domain; other site"
/db_xref="CDD:239317"
gene complement(33277..34263)
/locus_tag="VC0035"
/db_xref="GeneID:2614480"
CDS complement(33277..34263)
/locus_tag="VC0035"
/note="catalyzes the phosphorylation of protein substrates
at serine and threonine residues in vitro; specific
substrate in vivo has not been identified yet; plays a
role in long-term cell survival and expression of surface
appendages"
/codon_start=1
/transl_table=11
/product="serine/threonine protein kinase"
/protein_id="NP_229694.2"
/db_xref="GI:161582037"
/db_xref="GeneID:2614480"
/translation="MTQATFHFDALTPDLIWYALESIGIRAESGFLPLNSYENRVYQF
TDEERRRFVVKFYRPQRWTDEQIQEEHDFALELEQEEIPIVPPLRLNGATLHHYQGYR
FALFTSMGGRQYEVDNEEHLEWVGRFLGRIHKVGASKPFLHRPTLSLDEYLHQPRHTL
EYSHCIPAHLQRVFFHDLDILIAEIKQHWVPTQPQIRLHGDCHPGNILWRDGPMFVDL
DDARNGPAIQDLWMLLHGDRQDKLIQLDIVLEGYQEFCDFNPQQLKLIEPLRGLRMVH
YMAWLAKRWQDPAFPIAFPWFNDAKYWENQILAFKEQIATLQEPPLSLQPQW"
misc_feature complement(33289..34263)
/locus_tag="VC0035"
/note="Putative homoserine kinase type II (protein kinase
fold) [General function prediction only]; Region: COG2334"
/db_xref="CDD:225213"
misc_feature complement(33292..34263)
/locus_tag="VC0035"
/note="serine/threonine protein kinase; Provisional;
Region: PRK11768"
/db_xref="CDD:236974"
gene complement(34311..35735)
/locus_tag="VC0036"
/db_xref="GeneID:2614481"
CDS complement(34311..35735)
/locus_tag="VC0036"
/note="similar to PID:2398782; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="FixG-like protein"
/protein_id="NP_229695.2"
/db_xref="GI:471237025"
/db_xref="GeneID:2614481"
/translation="MSQDKIDVKDVTPKVFNPKTHKGQGGDRFNPSNRIYVRESKGTY
QKLRRYGGWFLLLLFGLVPWISYGDRQAILLDIGNQQFNFFGTTLYPQDLTLLALLFM
IAAFGLFFITTFLGRVWCGYLCPQTVWTFMYIWFEEKLEGNANKRRKQDNSPMTAELV
ARKTLKHIAWLAIALVTGFTFVGYFVPIRALVIDFFTLSAAFWPVFWVLFFALCTYGN
AGWMRSIMCIHMCPYARFQSAMFDKDTFIVGYDVARGEQRGPRSRKADPKALGLGDCI
DCDLCVQVCPTGIDIRDGLQYECINCGACIDACDNTMERMGYAKGLISYTTEHRLSGK
HTKVMRPKLLGYGAVFLVMIGLFFAQVAAVDPAGLTVLRDRTQLFRTNSSGEIENTYN
LKVINKTQQPQTYQLSVKGLDPVSWYGKQSVVVQPGEVLNLPMTLGAKPENLSSAVTT
IQFILHDESHQFTLEVESRFIQKL"
misc_feature complement(34320..35606)
/locus_tag="VC0036"
/note="cytochrome c oxidase accessory protein FixG;
Region: ccoG_rdxA_fixG; TIGR02745"
/db_xref="CDD:233993"
misc_feature complement(<35346..35447)
/locus_tag="VC0036"
/note="4Fe-4S binding domain; Region: Fer4_5; pfam12801"
/db_xref="CDD:221777"
misc_feature complement(<34809..>34982)
/locus_tag="VC0036"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:246686"
misc_feature complement(34323..34667)
/locus_tag="VC0036"
/note="Ubp3 associated protein Bre5; Region: Bre5;
pfam11614"
/db_xref="CDD:221151"
gene complement(36152..36430)
/locus_tag="VC0037"
/db_xref="GeneID:2614482"
CDS complement(36152..36430)
/locus_tag="VC0037"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229696.1"
/db_xref="GI:15640069"
/db_xref="GeneID:2614482"
/translation="MEKVMKCHRVEELLQLLEPEWHKDSELNLIQFLLKLAQEAGYQG
ALEDLTDDVLIYHLKMRNSAKDAVIPGLKKDYEDDFKTAILRARGIIK"
misc_feature complement(36161..36418)
/locus_tag="VC0037"
/note="Protein of unknown function (DUF1040); Region:
DUF1040; pfam06288"
/db_xref="CDD:148100"
gene complement(36527..36694)
/locus_tag="VC0038"
/db_xref="GeneID:2614548"
CDS complement(36527..36694)
/locus_tag="VC0038"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229697.1"
/db_xref="GI:15640070"
/db_xref="GeneID:2614548"
/translation="MRPTTVRFSNTNRSAMRRRSGFAVAPVAKKTATAPTLVERNALT
ASPETKVVQAA"
gene 36928..37770
/locus_tag="VC0039"
/db_xref="GeneID:2614549"
CDS 36928..37770
/locus_tag="VC0039"
/note="similar to GP:3522984; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="SpoOM-like protein"
/protein_id="NP_229698.1"
/db_xref="GI:15640071"
/db_xref="GeneID:2614549"
/translation="MRQGLALTMQFSQQEVSMSFIKKTLASFGIGSAKVDSVLQQEVL
YPGQSVKVIIHVYGGATAQVIDNIELKLCCCYIAEVADERGQQQGQPMRRVPHTYTLA
NWSLPYAFTIEAGETRNFDIELSIPWNTPVTIGDAKVWLETGLDIALALDPTDKDILT
VRPEPMMDGIFSALEAQGLRLRQVECEQAKGFALPFVQEFEFVPTTGPFQGRWREVEI
VAYRDPEALQLWFEVDRYQRGASGMLASLLGRGELKRHLTLPARTSPQEAGEQVLAFL
DRSC"
misc_feature 36928..37767
/locus_tag="VC0039"
/note="Sporulation control protein [General function
prediction only]; Region: Spo0M; COG4326"
/db_xref="CDD:34048"
misc_feature 36988..37665
/locus_tag="VC0039"
/note="SpoOM protein; Region: Spo0M; pfam07070"
/db_xref="CDD:115706"
gene 37848..38495
/locus_tag="VC0040"
/db_xref="GeneID:2614553"
CDS 37848..38495
/locus_tag="VC0040"
/note="similar to PID:887849 GB:U00096 PID:1789266;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="hemolysin"
/protein_id="NP_229699.1"
/db_xref="GI:15640072"
/db_xref="GeneID:2614553"
/translation="MSMSNSYGFKEEVANAISHGVGLILGIVGLVLLLVKAVDQQADA
LTITSMSIYGGSMIALFLASTLYHAIPYQRAKRWLKTFDHCAIYLLIAGSYTPFLLVS
LRTPLAVGLMIVIWSLALIGILMKIAFVYRFKKLSLVTYLTMGWLSLIVIYQLAIHLE
VGGLTLLAAGGLIYSLGVIFYVAKRIPYNHAIWHAFVLAGCACHFLAIYLYVEPI"
misc_feature 37848..38492
/locus_tag="VC0040"
/note="hemolysin; Provisional; Region: PRK15087"
/db_xref="CDD:185044"
gene complement(38534..39190)
/locus_tag="VC0041"
/db_xref="GeneID:2614554"
CDS complement(38534..39190)
/locus_tag="VC0041"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229700.1"
/db_xref="GI:15640073"
/db_xref="GeneID:2614554"
/translation="MALELWNVDGTFRNSDDFGALFPCILASLKGNIMKKLILVASIV
SLSTWASETLQLKDGRYIQLNDDFTWQYVPQETQPQQTSELAPLVLAAPVIAQPTLSG
VTITVGDHRPVLQLSDSGVDVVLSAPRYEHGQLKLSSAITNQSSQSVIAVRLAIRVQD
AQGVWSEEQEVTIWQSIKRMAETYLRPRTSVEGKPLELNLAEQSQYTLHATIKQIETR
"
misc_feature complement(38540..39091)
/locus_tag="VC0041"
/note="Protein of unknown function (DUF3157); Region:
DUF3157; pfam11355"
/db_xref="CDD:204630"
gene complement(39103..40548)
/locus_tag="VC0042"
/db_xref="GeneID:2614555"
CDS complement(39103..40548)
/locus_tag="VC0042"
/note="similar to GP:3288671; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="potassium uptake protein TrkH"
/protein_id="NP_229701.1"
/db_xref="GI:15640074"
/db_xref="GeneID:2614555"
/translation="MLNLRPITFIIGLVLSKLALFMYVPTLVAFFTGSGGFLDFAQAV
IITHLVAFLCLSIGRTEHFRLNVRDMFLITSLVWTIASAFAALPFVFINHISFTDAYF
ETMSGLTTTGSTVLSGLDDMPPSILLWRSILQWLGGVGFIVMAVAVLPMLNVGGMKLF
QTESSDWSDKSSPRAKTVAKNIVAVYLVLTGLCFLSYIATGMTPFEAINHAFTTLSTG
GYSTSDSSMNRFSHGAHWVGTLFMFLGGLPFLLFVQALRKQSARALLKDEQVRGFFWL
FMISSLLVAGWLWLKNDYAILDALRVSMFNIVSVVTTTGYGLDDFTAWGALPSTIFAF
LLMAGACSGSTSGGIKVFRFQIAMALLKKQLLNLIHPSGIFIQRYNKRPVNEEIIRSV
VAFGLTFFITIVVLAGALSAMGLDSVTSISGAVTAVANVGPGMGSIIGPTGNFAPLPD
AAKWLLSFGMLMGRLEILTILVLFFPAFWRH"
misc_feature complement(39106..40542)
/locus_tag="VC0042"
/note="Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: TrkG;
COG0168"
/db_xref="CDD:223246"
misc_feature complement(39157..40299)
/locus_tag="VC0042"
/note="potassium uptake protein, TrkH family; Region:
2a38; TIGR00933"
/db_xref="CDD:233196"
gene complement(40560..41936)
/gene="trkA"
/locus_tag="VC0043"
/gene_synonym="sapG"
/db_xref="GeneID:2614413"
CDS complement(40560..41936)
/gene="trkA"
/locus_tag="VC0043"
/gene_synonym="sapG"
/note="involved in potassium uptake; found to be
peripherally associated with the inner membrane in
Escherichia coli; contains an NAD-binding domain"
/codon_start=1
/transl_table=11
/product="potassium transporter peripheral membrane
component"
/protein_id="NP_229702.1"
/db_xref="GI:15640075"
/db_xref="GeneID:2614413"
/translation="MKIIILGAGQVGGTLAENLVGENNDITVVDKNADRLRDLQDKYD
LRVVNGHASHPDVLREAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSP
QYLAEKEALFQSGAVPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEEKVSLVAVKA
YYGGPLVGNALSALRDHMPHIDTRVAAIFRQGRPIRPQGTTIIEADDEVFFVAASNHI
RSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIEHNYQRAEQLSEQLEN
TIVFCGDAADQELLSEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKAMVLIQRSG
YVDLVQGGVIDVAISPQQATISALLTHVRRADIVNVSSLRRGAAEAIEAIAHGDESTS
KVVGRAVGDIKLPPGTTIGAIVRGEEVLIAHDRTVIEQDDHVVMFLVDKKYVPDVETL
FQPSPFFL"
misc_feature complement(40569..41936)
/gene="trkA"
/locus_tag="VC0043"
/gene_synonym="sapG"
/note="potassium transporter peripheral membrane
component; Reviewed; Region: trkA; PRK09496"
/db_xref="CDD:236541"
misc_feature complement(41562..41930)
/gene="trkA"
/locus_tag="VC0043"
/gene_synonym="sapG"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:216949"
misc_feature complement(41259..41474)
/gene="trkA"
/locus_tag="VC0043"
/gene_synonym="sapG"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:216867"
misc_feature complement(40887..41234)
/gene="trkA"
/locus_tag="VC0043"
/gene_synonym="sapG"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:216949"
misc_feature complement(40581..40772)
/gene="trkA"
/locus_tag="VC0043"
/gene_synonym="sapG"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:216867"
gene complement(41998..43302)
/locus_tag="VC0044"
/db_xref="GeneID:2614440"
CDS complement(41998..43302)
/locus_tag="VC0044"
/note="similar to SP:P36929 SP:P23866 GB:X52114 PID:43136
PID:443992; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="sun protein"
/protein_id="NP_229703.1"
/db_xref="GI:15640076"
/db_xref="GeneID:2614440"
/translation="MAFCLGFIMNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRD
HALLQEICYGVLRQLPRLESISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAA
VGETVEGAQDLKGPRLRGLINAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKE
SYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLET
PCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPES
QVVAIDCDETRLKRVRENLQRLELTAQVICGDARYPQQWWQGEQFDRILLDAPCSATG
VIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVK
AFLERTPDARLVGSDPAQPGRQILPGEEAMDGFYYAVLSKQH"
misc_feature complement(42004..43278)
/locus_tag="VC0044"
/note="16S rRNA methyltransferase B; Provisional; Region:
PRK10901"
/db_xref="CDD:182822"
misc_feature complement(42904..43278)
/locus_tag="VC0044"
/note="N-terminal RNA binding domain of the
methyltransferase Sun. The rRNA-specific 5-methylcytidine
transferase Sun, also known as RrmB or Fmu shares the
RNA-binding non-catalytic domain with the transcription
termination factor NusB. The precise biological...;
Region: Methyltransferase_Sun; cd00620"
/db_xref="CDD:29566"
misc_feature complement(43267..43278)
/locus_tag="VC0044"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:29566"
misc_feature complement(42172..42540)
/locus_tag="VC0044"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(42322..42324,42376..42384,42454..42459,
42511..42531))
/locus_tag="VC0044"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(43334..44281)
/gene="fmt"
/locus_tag="VC0045"
/db_xref="GeneID:2614441"
CDS complement(43334..44281)
/gene="fmt"
/locus_tag="VC0045"
/EC_number="2.1.2.9"
/note="modifies the free amino group of the aminoacyl
moiety of methionyl-tRNA(fMet) which is important in
translation initiation; inactivation of this gene in
Escherichia coli severely impairs growth"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="NP_229704.1"
/db_xref="GI:15640077"
/db_xref="GeneID:2614441"
/translation="MSQSLRIVFAGTPDFAARHLAALLSSEHEIIAVYTQPERPAGRG
KKLTASPVKTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAYGLLLPKVVLDT
PKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIMQMDVGLDTGDMLKIATLPIE
ASDTSASMYDKLAELGPQALLECLQDIAQGTAVAVKQDDGLANYAHKLSKEEARINWS
DAATHIERCIRAFNPWPMSHFEVAENSIKVWQARVETRAVTQTPGTIIQADKSGIYVA
TGQDVLVLESLQIPGKKALPVQDILNARADWFSVGSQLS"
misc_feature complement(43337..44269)
/gene="fmt"
/locus_tag="VC0045"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:234567"
misc_feature complement(43658..44269)
/gene="fmt"
/locus_tag="VC0045"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature complement(order(43841..43846,43853..43858,43862..43864,
43922..43924,43946..43957,43982..43984,43997..44020,
44234..44239,44249..44251))
/gene="fmt"
/locus_tag="VC0045"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature complement(order(43661..43663,43916..43924,43946..43951,
43955..43957,44006..44017,44147..44158,44162..44164,
44174..44176,44237..44239,44243..44248))
/gene="fmt"
/locus_tag="VC0045"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature complement(order(43841..43846,43853..43858,43955..43957,
43982..43984,43997..44005,44009..44011,44018..44020))
/gene="fmt"
/locus_tag="VC0045"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature complement(order(43841..43843,43949..43951,43955..43957))
/gene="fmt"
/locus_tag="VC0045"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature complement(43391..43651)
/gene="fmt"
/locus_tag="VC0045"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature complement(order(43397..43399,43403..43408,43412..43414,
43418..43420,43541..43543,43547..43549,43580..43582))
/gene="fmt"
/locus_tag="VC0045"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene complement(44299..44808)
/gene="def"
/locus_tag="VC0046"
/db_xref="GeneID:2614445"
CDS complement(44299..44808)
/gene="def"
/locus_tag="VC0046"
/EC_number="3.5.1.88"
/note="cleaves off formyl group from N-terminal methionine
residues of newly synthesized proteins; binds iron(2+)"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="NP_229705.1"
/db_xref="GI:15640078"
/db_xref="GeneID:2614445"
/translation="MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEG
IGLAATQVDIHQRIVVIDISETRDQPMVLINPEIIEKRGEDGIEEGCLSVPGARALVP
RAAEVTVKALDRNGQEYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLE
KIKRFNEKK"
misc_feature complement(44380..44793)
/gene="def"
/locus_tag="VC0046"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:238271"
misc_feature complement(order(44398..44400,44407..44412,44533..44541,
44656..44658,44671..44679))
/gene="def"
/locus_tag="VC0046"
/note="active site"
/db_xref="CDD:238271"
misc_feature complement(order(44407..44409,44533..44535,44656..44658,
44671..44673))
/gene="def"
/locus_tag="VC0046"
/note="catalytic residues [active]"
/db_xref="CDD:238271"
misc_feature complement(order(44398..44400,44410..44412,44536..44538))
/gene="def"
/locus_tag="VC0046"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238271"
gene 44900..46075
/locus_tag="VC0047"
/db_xref="GeneID:2614414"
CDS 44900..46075
/locus_tag="VC0047"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229706.1"
/db_xref="GI:15640079"
/db_xref="GeneID:2614414"
/translation="MISPKPSHFFDQGSKVMARLTRYITYALLPFTLLSGQVTADEQT
PLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWPRLWQVNPEIDNPHLIYPGDKLTL
FWRDGQPELSLKPMRKLSPQVRVLEKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRV
IGSSEGRQYLTKQDQLYISGVHSEKKWGIYREVAQYQRDDEVMVALRLVAVGELAMTG
GNFSGLSLLEQNQEILANDIALPEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQY
AGQNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLSERSNTDVQLPSVKVG
ALMVIRPYERFSLALITNSSAPISAEVHALSPQAEPQTEQPDVVQLSEQIDLVDDAS"
misc_feature 45059..45205
/locus_tag="VC0047"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 45164..46063
/locus_tag="VC0047"
/note="Uncharacterized protein containing LysM domain
[Function unknown]; Region: XkdP; COG1652"
/db_xref="CDD:31838"
gene 46075..47190
/locus_tag="VC0048"
/db_xref="GeneID:2614415"
CDS 46075..47190
/locus_tag="VC0048"
/note="similar to GB:L42023 SP:P43862 PID:1006171
PID:1221098 PID:609332; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="smf protein"
/protein_id="NP_229707.1"
/db_xref="GI:15640080"
/db_xref="GeneID:2614415"
/translation="MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWL
ACGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIVTPHCPLYPRLLKEINSSPPVLF
IEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRI
ISGLSLGVVVVEAAEKSGSLITARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACL
VQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQSDEELPFPELLANVGIEATPIDIL
ASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG"
misc_feature 46075..47178
/locus_tag="VC0048"
/note="Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion];
Region: Smf; COG0758"
/db_xref="CDD:223829"
misc_feature 46276..46935
/locus_tag="VC0048"
/note="DNA protecting protein DprA; Region: dprA;
TIGR00732"
/db_xref="CDD:129815"
gene 47193..47669
/locus_tag="VC0049"
/db_xref="GeneID:2614416"
CDS 47193..47669
/locus_tag="VC0049"
/note="similar to SP:P30853 PID:606218 GB:U00096
PID:1789679; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229708.1"
/db_xref="GI:15640081"
/db_xref="GeneID:2614416"
/translation="MMMDILMYLFETYVHSDADLQVDQDQLEDELLRAGFHQKDIYKA
LHWLEELAALQQTDAQTAIAKSAPTSMRIYAPEEIERLDLESRGFLLFLEHINVLTPE
TREMVIDRVMGLETDEFELDDLKWIILMVLFNVPGNENAYTVMEELLYSKEQGILH"
misc_feature 47196..47666
/locus_tag="VC0049"
/note="hypothetical protein; Validated; Region: PRK03430"
/db_xref="CDD:179578"
gene 47679..48251
/locus_tag="VC0050"
/db_xref="GeneID:2614418"
CDS 47679..48251
/locus_tag="VC0050"
/note="similar to SP:P45771 PID:606217 GB:U00096
PID:1789677; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase I-like protein"
/protein_id="NP_229709.1"
/db_xref="GI:15640082"
/db_xref="GeneID:2614418"
/translation="MSMSRKIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLGC
TAYPECDYIKPLHQNDGHIIKELGVPCPECGHELVLRQGRYGMFIGCSHYPQCHHIES
MDSPSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNSKPIAQACAQ
CGFTVMVEKKSAAGMRYQCANRQCGHIQEC"
misc_feature 47748..47855
/locus_tag="VC0050"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 47871..48248
/locus_tag="VC0050"
/note="Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair]; Region:
TopA; COG0551"
/db_xref="CDD:30897"
misc_feature 47880..47984
/locus_tag="VC0050"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 48018..48140
/locus_tag="VC0050"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
gene complement(48324..49457)
/locus_tag="VC0051"
/db_xref="GeneID:2614419"
CDS complement(48324..49457)
/locus_tag="VC0051"
/EC_number="4.1.1.21"
/note="With PurE catalyzes the conversion of
aminoimidazole ribonucleotide to carboxyaminoimidazole
ribonucleotide in the de novo purine nucleotide
biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase ATPase
subunit"
/protein_id="NP_229710.1"
/db_xref="GI:15640083"
/db_xref="GeneID:2614419"
/translation="MRVLVLGAGQLARMMSLAGAPLNIETIAFDVGSENIVHPLTQTV
LGHGLEQAIEQVDVITAEFEHIPHPILDLCARSGKLYPSAEAIKAGGDRRLEKALLDR
AQVANARYTMIRSRDDLTSAIAEIGLPMVLKSALGGYDGKGQWRLKEPTQIESVWQEL
AQYLAANPEQAIVAEEFVAFDREVSLVGARNLVGDVVVYPLAENVHTQGVLSLSTAID
APALQTQAKAMFKAVAEQLNYVGVLALEFFEVQGQLLVNEIAPRVHNSGHWTQQGAET
CQFENHLRAVCGLPLGSTKLVRETAMINILGEDQLPAEVLALEGCHVHWYGKAKRSGR
KMGHINVTADYSGELQRKLCQLATVLDEKAFPAVHAVAKEIQP"
misc_feature complement(48387..49457)
/locus_tag="VC0051"
/note="phosphoribosylaminoimidazole carboxylase ATPase
subunit; Reviewed; Region: PRK06019"
/db_xref="CDD:235674"
misc_feature complement(48636..49160)
/locus_tag="VC0051"
/note="ATP-grasp domain; Region: ATP-grasp; pfam02222"
/db_xref="CDD:216935"
gene complement(49461..49946)
/locus_tag="VC0052"
/db_xref="GeneID:2614427"
CDS complement(49461..49946)
/locus_tag="VC0052"
/note="Catalyzes a step in the de novo purine nucleotide
biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase
catalytic subunit"
/protein_id="NP_229711.1"
/db_xref="GI:15640084"
/db_xref="GeneID:2614427"
/translation="MTVGIIMGSKSDWPTMKHAAEMLDQFGVAYETKVVSAHRTPHLL
ADYASSAKERGLQVIIAGAGGAAHLPGMTAAFTSLPVLGVPVQSRALSGLDSLYSIVQ
MPKGIAVGTLAIGEAGAANAGLLAAQIIGIHNPEVMSKVEAFRAKQTQSVLDNPNPAE
E"
misc_feature complement(49464..49946)
/locus_tag="VC0052"
/note="Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
[Nucleotide transport and metabolism]; Region: PurE;
COG0041"
/db_xref="CDD:223119"
gene 50104..50670
/locus_tag="VC0054"
/db_xref="GeneID:2614432"
CDS 50104..50670
/locus_tag="VC0054"
/note="similar to SP:P45748 PID:606216 GB:U00096
PID:2367210; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="Sua5/YciO/YrdC family protein"
/protein_id="NP_229713.1"
/db_xref="GI:15640086"
/db_xref="GeneID:2614432"
/translation="MALVENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLL
AIKQRPVEKGVILIAASYAQLRPYVDETQLTAEQLTQVLASWPAPLTWVMPASGDTPS
WVRGQFDTVAVRVSDHPVVQKLCLAFGKPLTSTSANLSGQPACVTQQEVMVQLGNQIA
VVVEGKTSGRHGPSEIRDARSLQVLRQG"
misc_feature 50122..50667
/locus_tag="VC0054"
/note="Telomere recombination; Region: Sua5_yciO_yrdC;
cl00305"
/db_xref="CDD:206970"
gene 50689..51606
/locus_tag="VC0055"
/db_xref="GeneID:2614439"
CDS 50689..51606
/locus_tag="VC0055"
/EC_number="1.3.3.3"
/note="catalyzes the conversion of the propionic acid
groups of rings I and III to vinyl groups during heme
synthesis"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="NP_229714.1"
/db_xref="GI:15640087"
/db_xref="GeneID:2614439"
/translation="MESIVDKQAVKHFLLQLQDKICQQLEATDGQAQFIEDAWQREPG
EKLGGGGRTRVMREGAVFEQGGVNFSHVFGEQMPASATAHRPELAGRRFEAMGVSLVM
HPKNPYVPTSHANVRFFIAEKEGEAPIWWFGGGFDLTPFYPFVEDGQHWHQTAKNICA
PFGSEIYNEHKAWCDRYFYLPHRNETRGIGGLFFDDLNEWSFEQCFAYMQAVGEGYTQ
AYVPIVEKRKNTPFTERERQFQLYRRGRYVEFNLVLDRGTLFGLQTGGRTESILMSMP
PLARWEYAYQPQAGTPEAKLSEFLVPREW"
misc_feature 50689..51603
/locus_tag="VC0055"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK05330"
/db_xref="CDD:235413"
misc_feature 50710..51603
/locus_tag="VC0055"
/note="Coproporphyrinogen III oxidase; Region:
Coprogen_oxidas; pfam01218"
/db_xref="CDD:216370"
gene 51668..52504
/gene="aroE"
/locus_tag="VC0056"
/db_xref="GeneID:2614442"
CDS 51668..52504
/gene="aroE"
/locus_tag="VC0056"
/EC_number="1.1.1.25"
/note="AroE; catalyzes the conversion of shikimate to
3-dehydroshikimate"
/codon_start=1
/transl_table=11
/product="shikimate 5-dehydrogenase"
/protein_id="NP_229715.1"
/db_xref="GI:15640088"
/db_xref="GeneID:2614442"
/translation="MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPV
DGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILG
DNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKA
EQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMM
YGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEG
AL"
misc_feature 51668..52495
/gene="aroE"
/locus_tag="VC0056"
/note="shikimate 5-dehydrogenase; Reviewed; Region: aroE;
PRK00258"
/db_xref="CDD:234703"
misc_feature 51695..51943
/gene="aroE"
/locus_tag="VC0056"
/note="Shikimate dehydrogenase substrate binding domain;
Region: Shikimate_dh_N; pfam08501"
/db_xref="CDD:149523"
misc_feature 51980..52441
/gene="aroE"
/locus_tag="VC0056"
/note="NAD(P) binding domain of Shikimate dehydrogenase;
Region: NAD_bind_Shikimate_DH; cd01065"
/db_xref="CDD:133443"
misc_feature order(51983..51985,52322..52324,52400..52402,52409..52411)
/gene="aroE"
/locus_tag="VC0056"
/note="shikimate binding site; other site"
/db_xref="CDD:133443"
misc_feature order(52058..52060,52067..52069,52127..52132,52238..52246,
52316..52318,52388..52390,52397..52402)
/gene="aroE"
/locus_tag="VC0056"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133443"
gene 52501..52776
/locus_tag="VC0057"
/db_xref="GeneID:2614443"
CDS 52501..52776
/locus_tag="VC0057"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229716.1"
/db_xref="GI:15640089"
/db_xref="GeneID:2614443"
/translation="MNQSILFPDLQHWDEAKQAVVFFAQQNGALIECLVARQVLQELS
GEALAESQHVMTAFSEWRFDLEELAEQAIENEMFNSLGQIEITRERF"
misc_feature 52510..52761
/locus_tag="VC0057"
/note="Protein of unknown function (DUF1488); Region:
DUF1488; pfam07369"
/db_xref="CDD:191733"
gene complement(52757..53311)
/locus_tag="VC0058"
/db_xref="GeneID:2614444"
CDS complement(52757..53311)
/locus_tag="VC0058"
/note="similar to GB:AE000657; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase"
/protein_id="NP_229717.1"
/db_xref="GI:15640090"
/db_xref="GeneID:2614444"
/translation="MMSSIRSYKGIVPKLGEGVYVDSSAVLVGDIELGDDASIWPLVA
ARGDVNHIRIGKRTNIQDGSVLHVTHKNAENPNGYPLCIGDDVTIGHKVMLHGCTIHD
RVLVGMGSIVLDGAVIENDVMIGAGSLVPPGKRLESGFLYMGSPVKQARPLNDKERAF
LVKSSSNYVQSKNDYLNDVKTVRE"
misc_feature complement(52760..53308)
/locus_tag="VC0058"
/note="Carbonic anhydrases/acetyltransferases, isoleucine
patch superfamily [General function prediction only];
Region: PaaY; COG0663"
/db_xref="CDD:223735"
misc_feature complement(52802..53272)
/locus_tag="VC0058"
/note="Gamma carbonic anhydrase-like: This family is
composed of gamma carbonic anhydrase (CA), Ferripyochelin
Binding Protein (FBP), E. coli paaY protein, and similar
proteins. CAs are zinc-containing enzymes that catalyze
the reversible hydration of carbon...; Region:
LbH_gamma_CA_like; cd04645"
/db_xref="CDD:100051"
misc_feature complement(order(52988..52990,53024..53026,53030..53041,
53111..53113,53123..53128,53168..53170,53174..53176,
53180..53185,53192..53194,53228..53230,53237..53242,
53246..53248,53252..53254))
/locus_tag="VC0058"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100051"
misc_feature complement(order(53024..53026,53039..53041,53111..53113))
/locus_tag="VC0058"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:100051"
gene 53497..53637
/locus_tag="VC0059"
/db_xref="GeneID:2614446"
CDS 53497..53637
/locus_tag="VC0059"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229718.1"
/db_xref="GI:15640091"
/db_xref="GeneID:2614446"
/translation="MIQLGVLGREIANENKLKKVFDTTVYLAKMAASSEADCKEERSL
TI"
gene 53823..55357
/gene="16Sa"
/locus_tag="VCr001"
/db_xref="GeneID:2614447"
rRNA 53823..55357
/gene="16Sa"
/locus_tag="VCr001"
/product="16S ribosomal RNA"
/db_xref="GeneID:2614447"
gene 55421..55496
/gene="tRNA-Ala-5"
/locus_tag="VCt001"
/db_xref="GeneID:2614448"
tRNA 55421..55496
/gene="tRNA-Ala-5"
/locus_tag="VCt001"
/product="tRNA-Ala"
/db_xref="GeneID:2614448"
gene 55784..58670
/gene="23Sa"
/locus_tag="VCr002"
/db_xref="GeneID:2614453"
rRNA 55784..58670
/gene="23Sa"
/locus_tag="VCr002"
/product="23S ribosomal RNA"
/db_xref="GeneID:2614453"
gene 58798..58915
/gene="5Sa"
/locus_tag="VCr003"
/db_xref="GeneID:2614433"
rRNA 58798..58915
/gene="5Sa"
/locus_tag="VCr003"
/product="5S ribosomal RNA"
/db_xref="GeneID:2614433"
gene 58941..59017
/gene="tRNA-Asp-4"
/locus_tag="VCt002"
/db_xref="GeneID:2614449"
tRNA 58941..59017
/gene="tRNA-Asp-4"
/locus_tag="VCt002"
/product="tRNA-Asp"
/db_xref="GeneID:2614449"
gene 59047..59123
/gene="tRNA-Trp-1"
/locus_tag="VCt003"
/db_xref="GeneID:2614417"
tRNA 59047..59123
/gene="tRNA-Trp-1"
/locus_tag="VCt003"
/product="tRNA-Trp"
/db_xref="GeneID:2614417"
gene 59356..59736
/gene="ccrB"
/locus_tag="VC0060"
/db_xref="GeneID:2614420"
CDS 59356..59736
/gene="ccrB"
/locus_tag="VC0060"
/note="may be involved in chromosome condensation;
overexpression in Escherichia coli protects against
decondensation by camphor; overexpressing the protein
results in an increase in supercoiling"
/codon_start=1
/transl_table=11
/product="camphor resistance protein CrcB"
/protein_id="NP_229719.1"
/db_xref="GI:15640092"
/db_xref="GeneID:2614420"
/translation="MSFAILGFIALGGAVGACARFLVSEICVTLFGRGFPIGTLTVNV
VGSFIMGVLIACVENEWLSPYPWKQVIGLGFLGALTTFSTFSMDNVLLMQQGAFFKMG
ANVLLNVILSISAAWIGFHWLMKS"
misc_feature 59356..59733
/gene="ccrB"
/locus_tag="VC0060"
/note="camphor resistance protein CrcB; Provisional;
Region: PRK14200"
/db_xref="CDD:237638"
gene 59988..61925
/locus_tag="VC0061"
/db_xref="GeneID:2614465"
CDS 59988..61925
/locus_tag="VC0061"
/note="required for the synthesis of the
hydromethylpyrimidine moiety of thiamine"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiC"
/protein_id="NP_229720.1"
/db_xref="GI:15640093"
/db_xref="GeneID:2614465"
/translation="MSNRKQARLEAKRFIDTLSVEPYPNSQKSYLLGSRPDIRVPVRE
ITLSDTLVGGSKDAPIFEPNEPICVYDTSGVYTDPSHDIDLYKGLPKLREEWIEERRD
THILPSMSSHFARERLADETLDELRYGHLPRIRRAMGQHRVTQLHYARQGIITPEMEF
VAIRENSRRLAHQDPSLLQQHAGQNFGAHLPDLITPEFVRREIAEGRAIIPCNINHPE
SEPMIIGRNFLVKVNANIGNSSVSSSIEEEVEKLVWATRWGADTVMDLSTGRNIHETR
EWILRNSPVPIGTVPMYQALEKVNGVAENLTWEVMRDTLLEQAEQGVDYFTIHAGLLL
RYVPMTAKRVTGIVSRGGSIIAKWCLSHHQENFLYTHFREICEICAQYDVALSLGDGL
RPGSIADANDEAQFAELRTLGELTQIAWEYDVQVMIEGPGHVPMHLIKANMDEQLKHC
HEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKT
GLITYKLAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLALDPVTARAFHDETL
PQESGKVAHFCSMCGPKFCSMKISQEVRDYANNQTLDTTVIDLVMPAESIQLAMQDKS
REFLASGAELYHPLVKEPIEE"
misc_feature 60000..61901
/locus_tag="VC0061"
/note="thiamine biosynthesis protein ThiC; Provisional;
Region: PRK09284"
/db_xref="CDD:236451"
misc_feature 60048..60296
/locus_tag="VC0061"
/note="ThiC-associated domain; Region: ThiC-associated;
pfam13667"
/db_xref="CDD:222303"
misc_feature 60408..61778
/locus_tag="VC0061"
/note="Thiamine biosynthesis protein ThiC [Coenzyme
metabolism]; Region: ThiC; COG0422"
/db_xref="CDD:223499"
gene 61929..63251
/gene="thiE"
/locus_tag="VC0062"
/db_xref="GeneID:2614105"
CDS 61929..63251
/gene="thiE"
/locus_tag="VC0062"
/EC_number="2.5.1.3"
/note="Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole
monophosphate and 4-amino-5-hydroxymethyl pyrimidine
pyrophosphate to form thiamine monophosphate"
/codon_start=1
/transl_table=11
/product="thiamine-phosphate pyrophosphorylase"
/protein_id="NP_229721.1"
/db_xref="GI:15640094"
/db_xref="GeneID:2614105"
/translation="MVRLVFPRHLSALIGHVQYALLQAKEQGVAIQHIRLDVGSEAQF
ILEKSEESLRIGSSLCSQKEGFEPCDYYLDYVSENRVLPEAMMCNARCTVTVGLHDEY
GFTLDKWQYGHAAEQLIVYPSENHRLNSKVNQHLAWVLATLTLDFSIGDGLCIARAAI
TQGDSVSRETWPTQFERFPAVQSNIRSLSTQVFLTTRAFPTIDKAKFNLYPVVDDVNW
IEHLLKLGVRTVQLRIKDPKQGDLEAQIIRAIALGREFNAQVFINDHWQLAIKHQAYG
VHLGQEDLTSANLTELLDAGIRLGLSTHGYYELLIAAGIQPSYIALGHIFPTTTKQMP
SKPQGLVRLAAYQRLVNQMPYQGQHGIPTVAIGGIDCRNIRDVLDCGVTAVAVVRAIT
ESPDPSLAVQALSSAFADFVDAEYKLMPASESCEPLSYLAMEVADAHR"
misc_feature 61929..63242
/gene="thiE"
/locus_tag="VC0062"
/note="thiamine-phosphate pyrophosphorylase; Reviewed;
Region: thiE; PRK12290"
/db_xref="CDD:237041"
misc_feature 62553..63140
/gene="thiE"
/locus_tag="VC0062"
/note="Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution of
the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
Region: TMP_TenI; cd00564"
/db_xref="CDD:238317"
misc_feature order(62556..62558,62562..62564,62619..62621,62625..62627,
62760..62762,62832..62834,62883..62885,62889..62891,
62910..62912,62916..62918,63018..63020,63030..63032,
63084..63095)
/gene="thiE"
/locus_tag="VC0062"
/note="thiamine phosphate binding site [chemical binding];
other site"
/db_xref="CDD:238317"
misc_feature order(62619..62621,62625..62627,62631..62633,62715..62720,
62775..62777,62832..62834,62910..62912,62916..62921,
63030..63032,63090..63095)
/gene="thiE"
/locus_tag="VC0062"
/note="active site"
/db_xref="CDD:238317"
misc_feature order(62625..62627,62631..62633,62715..62720,62766..62768,
62775..62777,62832..62834,62919..62921)
/gene="thiE"
/locus_tag="VC0062"
/note="pyrophosphate binding site [ion binding]; other
site"
/db_xref="CDD:238317"
gene 63238..64014
/locus_tag="VC0063"
/db_xref="GeneID:2614106"
CDS 63238..64014
/locus_tag="VC0063"
/note="similar to SP:P30138 PID:396331 PID:414234
GB:U00096 PID:1790425; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="thiazole biosynthesis adenylyltransferase ThiF"
/protein_id="NP_229722.1"
/db_xref="GI:15640095"
/db_xref="GeneID:2614106"
/translation="MLTDKQFLRYQRQISLAELGEEGQQKLLNSRVLIVGCGGLGNVV
APYLVGAGVGQVIIADSDRLELHNLHRQICYHEAQIGHNKAELLARYLRELNSEVRVR
VIAREVDELILNLEINQVDLVLDCSDNLPTRHAINRACYAAQRPLISGAVIGWEGHLM
AFDYRQSTPCYQCVVPDMAERQRCSDRGVIGPVVGMIGNGQALIALHALMGSAHFPAN
QLLRFDGKSMNWQSLQLHPDKVCPVCSVSSPAQPKEPQPC"
misc_feature 63262..63942
/locus_tag="VC0063"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:238386"
misc_feature 63262..63864
/locus_tag="VC0063"
/note="thiazole biosynthesis adenylyltransferase ThiF, E.
coli subfamily; Region: adenyl_thiF; TIGR02356"
/db_xref="CDD:162820"
misc_feature order(63343..63345,63349..63351,63355..63357,63415..63417,
63421..63423,63448..63450,63487..63489,63613..63615,
63631..63633)
/locus_tag="VC0063"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238386"
misc_feature order(63355..63357,63616..63624,63634..63636,63688..63693,
63703..63705,63709..63711,63895..63897,63907..63909,
63928..63930,63934..63939)
/locus_tag="VC0063"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:238386"
gene 63957..64214
/locus_tag="VC0064"
/db_xref="GeneID:2612942"
CDS 63957..64214
/locus_tag="VC0064"
/note="'with ThiF, ThiG, and ThiO catalyzes the formation
of the thiazole moiety of thiamine pyrophosphate'"
/codon_start=1
/transl_table=11
/product="sulfur carrier protein ThiS"
/protein_id="NP_229723.1"
/db_xref="GI:15640096"
/db_xref="GeneID:2612942"
/translation="MPSLQRIVTCTTEGAATVLMTIYLNQQAIQTDISSSLFHLHAQL
SLPSQGCVFSLNGQVVPRSEWQHTKLNSGDEISLFQAIAGG"
misc_feature 64017..64211
/locus_tag="VC0064"
/note="ThiaminS ubiquitin-like sulfur carrier protein;
Region: ThiS; cd00565"
/db_xref="CDD:176353"
misc_feature order(64131..64133,64185..64193)
/locus_tag="VC0064"
/note="thiS-thiF/thiG interaction site; other site"
/db_xref="CDD:176353"
gene 64220..64990
/gene="thiG"
/locus_tag="VC0065"
/db_xref="GeneID:2612943"
CDS 64220..64990
/gene="thiG"
/locus_tag="VC0065"
/note="functions in thiamine (vitamin B1) biosynthesis; in
Bacillus subtilis this enzyme catalyzes the formation of
thiazole from dehydroxyglycine and
1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate"
/codon_start=1
/transl_table=11
/product="thiazole synthase"
/protein_id="NP_229724.1"
/db_xref="GI:15640097"
/db_xref="GeneID:2612943"
/translation="MLKIADKTFQSRLFTGTGKFSNRHVMAEALAASGSELVTMALKR
IDLAQRDDDILAPLLSMQMNLLPNTSGAKNAADAVYAAELAREALATNWLKLEIHPDP
KYLMPDPIETLLAAEQLVKQGFIVLPYCHADPVLCKRLEEVGCAAVMPLGSPIGSNQG
LASKTFLEIIIDQAKVPVIVDAGIGSPSDAAQAMELGADAVLVNTAIAAAHDPIAMAK
AFKLAVEAGRMAYESGLPSRVKMATASSPLTGFLDFVS"
misc_feature 64223..64963
/gene="thiG"
/locus_tag="VC0065"
/note="Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous cofactor
that plays an important role in carbohydrate and amino
acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728"
/db_xref="CDD:240079"
misc_feature order(64340..64342,64376..64378,64385..64387)
/gene="thiG"
/locus_tag="VC0065"
/note="ThiS interaction site; other site"
/db_xref="CDD:240079"
misc_feature order(64502..64504,64508..64510,64760..64762)
/gene="thiG"
/locus_tag="VC0065"
/note="putative active site [active]"
/db_xref="CDD:240079"
misc_feature order(64517..64519,64526..64528,64535..64543,64610..64612,
64616..64624,64631..64636,64688..64696,64703..64705,
64721..64723,64733..64735,64775..64783,64793..64795,
64802..64807,64832..64834,64847..64855,64862..64867,
64874..64876,64895..64897,64904..64909,64913..64927,
64931..64936,64940..64942,64946..64954,64958..64960)
/gene="thiG"
/locus_tag="VC0065"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:240079"
gene 64987..66099
/gene="thiH"
/locus_tag="VC0066"
/db_xref="GeneID:2612944"
CDS 64987..66099
/gene="thiH"
/locus_tag="VC0066"
/note="'in Escherichia coli this enzyme functions in
thiamine biosynthesis along with thiFSGI and iscS; with
ThiFSG catalyzes the formation of thiazole phosphate from
tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate;
forms a complex with ThiG; contains an iron-sulfur
center'"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiH"
/protein_id="NP_229725.1"
/db_xref="GI:15640098"
/db_xref="GeneID:2612944"
/translation="MSFITHFQQLGWDDSRLSIYGKTARDVERALSSPKRTLDDFKAL
ISPSAEPYLETMAQMAYQATRQRFGNTMSMYIPLYLSNLCSNSCTYCGFSMDNRIKRK
TLNEVEIEREIAAIKRMGFDSVLLVTGEHETKVGIEYFRRALPIIKQAFHYVAMEVQP
LQQEEYAELIGLGLDAVMVYQETYHPSTYAQHHLRGKKTDFWYRLETPDRLARAGIDK
IGIGALIGLEDWRTDSIFVAAHLDYLERQYWKTRYSISFPRLRPCEGALQPKSVMTDR
QLVQLICAFRLFNSEVELSLSTRESPMFRDQVAKLGITSMSAASKTQPGGYSDPKVEL
EQFAVSDERSAAEVSSALMEQGLQVVWHDWHRAYSG"
misc_feature 64987..66096
/gene="thiH"
/locus_tag="VC0066"
/note="thiamine biosynthesis protein ThiH; Reviewed;
Region: thiH; PRK09240"
/db_xref="CDD:236425"
misc_feature 65218..65796
/gene="thiH"
/locus_tag="VC0066"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(65236..65238,65242..65244,65248..65250,65254..65262,
65365..65367,65371..65376,65455..65463,65524..65526,
65656..65658,65761..65766)
/gene="thiH"
/locus_tag="VC0066"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 65746..66063
/gene="thiH"
/locus_tag="VC0066"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; pfam06968"
/db_xref="CDD:219245"
gene complement(66324..68117)
/locus_tag="VC0067"
/db_xref="GeneID:2612945"
CDS complement(66324..68117)
/locus_tag="VC0067"
/note="similar to GP:2584787; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="aminopeptidase"
/protein_id="NP_229726.1"
/db_xref="GI:15640099"
/db_xref="GeneID:2612945"
/translation="MSNLHSQRLADFRHWLHTQQLDAFIVPHEDEYLGEYVPEHNERL
HWLTGFTGSAGAAIVTLSGAAIFVDGRYTVQVRKQVSSELFEYCHLIEQPYLNWLVTQ
LPAGAKVGYDPRMHRGSWLTQAQKQLAGKINLCAVSSNPIDLLWQDRPVPAASEMRLI
PLDRVGQSSLEKRQSIASTLRDKNADCVVLTELDSIAWLLNIRGLDVSRLPVLLSHAI
VHNDSSVDFFFDPARLATDFDAHVAGTVRVHHPDQLEAQLHQLSGRRVMLDSATSNAW
FTLTLQNAGAELLNEADPCLLPKAAKNNTEIAGMRACHIRDGAAMVQFLAWLDNEVAN
GRLHNEAELADRLEAFRRQDPTLVDLSFDTISAAGTNAAMCHYNHQNQPEPGQLSMDS
LYLVDSGGQYLDGTTDITRTVAIGQVSAEMKQQFTLVLKGHIALARARFPKGTTGSQL
DVLARQHLWAQGYDYDHGTGHGVGHFLSVHEGPQRIAKVHNSVALRPGMVLSNEPGYY
RADAFGIRIENLELVTEFATQGDFSVLGFESLTRCPIDKRAIEVNLLTKPELHWLNQY
HQKVWDEVSPLIKEAHVREWLQQATSPLSHV"
misc_feature complement(67728..68096)
/locus_tag="VC0067"
/note="Creatinase/Prolidase N-terminal domain; Region:
Creatinase_N; pfam01321"
/db_xref="CDD:216431"
misc_feature complement(66465..67607)
/locus_tag="VC0067"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:223085"
misc_feature complement(66522..67193)
/locus_tag="VC0067"
/note="X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also
known as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid, including
proline, that is linked with proline; Region: APP;
cd01085"
/db_xref="CDD:238518"
misc_feature complement(order(66564..66566,66606..66608,66693..66695,
66894..66896,66927..66929,66990..66992))
/locus_tag="VC0067"
/note="active site"
/db_xref="CDD:238518"
gene complement(68250..69233)
/locus_tag="VC0068"
/db_xref="GeneID:2612948"
CDS complement(68250..69233)
/locus_tag="VC0068"
/note="similar to GB:L10328 SP:P31463 PID:290559 GB:U00096
PID:1790147; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_229727.1"
/db_xref="GI:15640100"
/db_xref="GeneID:2612948"
/translation="MVYRHCCYSILEKLMQIEKLARIDLNLLVCLKVLIEELSVTRAA
ARLCLSQSAVSKSLAKLREQFDDPLFVRTSYGLNATPKALFLKPKLDVLVNQLELLTQ
PAHFSPQSSEYRFQIAAVESVYPLIMPYFLPTIFRHGPHLSISTHAWTEQTFRKLQVG
ELDFGLTGKDIDINDAKLTLLPPADICEQEIYRDNQRCVVRRGHPVLQYDWNLSSYLN
LRHVQVRCDGNDRWLLDYRLADLGYERDIAITVPDFNSAASLCTYTDFIFTAPSHFTH
WVAKQMDLVELPLPMEFPPMAYTLFWHRERENDPALRWLRELIQTNTLHLR"
misc_feature complement(68271..69176)
/locus_tag="VC0068"
/note="DNA-binding transcriptional regulator YidZ;
Provisional; Region: PRK10216"
/db_xref="CDD:182312"
misc_feature complement(68985..69161)
/locus_tag="VC0068"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(68274..68894)
/locus_tag="VC0068"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulators that involved in the
catabolism of nitroaromatic/naphthalene compounds and that
of related regulators; contains the type 2 periplasmic
binding fold; Region: PBP2_Nitroaromatics_like; cd08417"
/db_xref="CDD:176109"
misc_feature complement(order(68340..68342,68541..68543,68652..68654,
68853..68855,68865..68870,68874..68876))
/locus_tag="VC0068"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:176109"
misc_feature complement(order(68445..68447,68454..68459,68466..68471,
68478..68492,68574..68576,68790..68792,68796..68810,
68814..68819,68826..68831,68835..68840,68847..68852,
68859..68864,68871..68873))
/locus_tag="VC0068"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176109"
gene 69296..70498
/locus_tag="VC0069"
/db_xref="GeneID:2612949"
CDS 69296..70498
/locus_tag="VC0069"
/note="similar to GB:L10328 SP:P31462 PID:290558 GB:U00096
PID:1790146; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein"
/protein_id="NP_229728.1"
/db_xref="GI:15640101"
/db_xref="GeneID:2612949"
/translation="MKQAMPSQVSKQQMVLLTLLVLFSPLAIDIYLPALPQISQAFHV
EHALAQDTITWFLFAMGVGQLFAGPLADKYGRRTVALGGISIYALSALLAWSAQSIEW
MLMARLLQGLGACATSVAAFATVRDLFGPQRSGKMISYLNGAICFIPALAPILGSWLT
QQFGWRANFSFMTGFALLVGLAMALRLQESNPYMGSRPAVFKLSRYAAVLKAPTFLFH
ASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTFWFGVNAVINIIACMTAPKVMDKL
GTRWSLIIGITTLMIAGSLMLVLRNQASALAFMLPVFLSSIGFAWILGAAAGKALAPF
GDKAGTAAALLGLFQMSGSGLLVGTLQRIMPEPQLLIGLTMWLAAPALLILFSPLGFR
WHASVSEC"
misc_feature 69362..70462
/locus_tag="VC0069"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 69365..70456
/locus_tag="VC0069"
/note="drug resistance transporter, Bcr/CflA subfamily;
Region: efflux_Bcr_CflA; TIGR00710"
/db_xref="CDD:233099"
misc_feature order(69377..69379,69386..69394,69398..69403,69452..69454,
69461..69466,69473..69475,69485..69490,69494..69499,
69635..69640,69647..69652,69659..69664,69671..69673,
69707..69712,69719..69724,69740..69742,69971..69973,
69980..69985,69992..69997,70004..70006,70046..70048,
70058..70060,70070..70072,70079..70081,70091..70093,
70235..70237,70244..70249,70256..70258,70268..70273,
70280..70282,70316..70321,70328..70333,70340..70345,
70352..70354)
/locus_tag="VC0069"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 70602..70886
/locus_tag="VC0070"
/db_xref="GeneID:2612950"
CDS 70602..70886
/locus_tag="VC0070"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229729.1"
/db_xref="GI:15640102"
/db_xref="GeneID:2612950"
/translation="MSLTTYEMARILEQLDESPEKVMYGKLLNELGNQSSERIRSAAK
QVPLTVLRDLVYQFQQVIESRKGEQVETMAKELAKQGISAEELLNYLQKR"
gene complement(70975..71436)
/locus_tag="VC0071"
/db_xref="GeneID:2612951"
CDS complement(70975..71436)
/locus_tag="VC0071"
/note="transcriptional repressor of asnA which codes for
aspartate-ammonia ligase"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator AsnC"
/protein_id="NP_229730.1"
/db_xref="GI:15640103"
/db_xref="GeneID:2612951"
/translation="MQTTTKLDELDRAILKILMDDARTPYAEMAKQFNVSPATIHVRI
EKMKAADIIQGTEVVVNTKKLGYDVCCFIGINLNAARDYHSALAKLNALDEVVEAYYT
TGAYNIFVKLMCRSIEELQHVLIDKLQAIDEVQSTETLISLQNPISRNVNP"
misc_feature complement(70978..71436)
/locus_tag="VC0071"
/note="DNA-binding transcriptional regulator AsnC;
Provisional; Region: PRK11179"
/db_xref="CDD:183019"
misc_feature complement(<71275..71415)
/locus_tag="VC0071"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature complement(order(71290..71295,71299..71304,71311..71316,
71320..71331,71356..71358,71362..71367,71404..71412))
/locus_tag="VC0071"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature complement(order(71353..71355,71365..71367))
/locus_tag="VC0071"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
misc_feature complement(71005..71220)
/locus_tag="VC0071"
/note="AsnC family; Region: AsnC_trans_reg; pfam01037"
/db_xref="CDD:216258"
gene 71512..73818
/locus_tag="VC0072"
/db_xref="GeneID:2612952"
CDS 71512..73818
/locus_tag="VC0072"
/note="similar to PID:1651932; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="sensory box/GGDEF family protein"
/protein_id="NP_229731.1"
/db_xref="GI:15640104"
/db_xref="GeneID:2612952"
/translation="MESDLSRLRHWYNKYALPLAVGLGCFWTANLVAQEPTLSSQPLD
NLGTSRVPWDSELAANAMLWIVALVAIMVLSILTVRQYHYIQRLRTNQKLLESIFDQS
THYIGIFDLEGRIISCNGKLQGLLYRHGESLLRPIWQHKGWEDSAVEHIQNYFSESVP
QTRQFNAEIWHPELGAIVLECQFKPLPTREESQILLEAQDITWRKITEDKLFQREASL
RHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGHHIRDFYQDEEVLTPRQM
LLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLVETGTLLIVGEDITETRQLADQL
AYQARYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLYLDLDQLKVLNDTAGHDAG
DGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSIIHALSEVAFV
WEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYRQDDEDLRR
RQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEYVSPGIF
VPASERYNLAHRLDRKIVEQTFNWLEARPQVLDKLGRVSINLSGNSIGNPDFVAFLLE
RLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFGYLQ
KLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQI
GVDYAQGYLFSRPQPIADWVAEQLKEKA"
misc_feature 72151..72513
/locus_tag="VC0072"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:213515"
misc_feature 72187..72483
/locus_tag="VC0072"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(72232..72234,72244..72246,72262..72264,72301..72312,
72391..72393,72406..72408)
/locus_tag="VC0072"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(72292..72294,72304..72306,72328..72330,72337..72339,
72343..72345,72427..72429,72433..72435)
/locus_tag="VC0072"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 72475..73008
/locus_tag="VC0072"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:32381"
misc_feature 72526..72999
/locus_tag="VC0072"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(72637..72639,72766..72768)
/locus_tag="VC0072"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(72652..72654,72661..72666,72676..72678,72688..72690,
72754..72756,72760..72771)
/locus_tag="VC0072"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(72742..72744,72826..72828)
/locus_tag="VC0072"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 73060..73785
/locus_tag="VC0072"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 73878..74663
/locus_tag="VC0073"
/db_xref="GeneID:2614881"
CDS 73878..74663
/locus_tag="VC0073"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229732.2"
/db_xref="GI:471237026"
/db_xref="GeneID:2614881"
/translation="MLIQLICQAPQRAQELEQIAARWQLQASDDSPFALVLSEERLEL
RKLDEPKLGAIYVDWVEGAVAHRRKFGGGKGQSIAKAAGLNKGVTPVVLDATAGLGRD
AFVLASLGCRVQMVERHPVVAALLEDGLQRAKQDDEIGAWVSERISLLHASSHDALQQ
LASDPNFTSPDVVYLDPMYPHPENKKKTALVKKEMRVFQSLVGADNDADALLEPALQL
AQKRVVVKRPDYAPWLGNRKPSMAMETKKNRFDVYVIAAMSGE"
misc_feature 74151..>74420
/locus_tag="VC0073"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(74160..74180,74226..74231,74331..74339,74403..74405)
/locus_tag="VC0073"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 74781..75170
/locus_tag="VC0074"
/db_xref="GeneID:2614857"
CDS 74781..75170
/locus_tag="VC0074"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229733.1"
/db_xref="GI:15640106"
/db_xref="GeneID:2614857"
/translation="MVVAKRLCKLSRHEIATSLSEIERLVAEPQFLCRACARVAGDKK
SLCKPQAMSLPAPVATVVALPAHESGVVSLLPKASLKKQRKFHKKLEKVLKKQRKLMK
KQQLLEGKVGQRHPTPVVERATAQSMH"
gene complement(75266..76153)
/locus_tag="VC0075"
/db_xref="GeneID:2614858"
CDS complement(75266..76153)
/locus_tag="VC0075"
/note="similar to PID:2062658; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="MadN protein"
/protein_id="NP_229734.1"
/db_xref="GI:15640107"
/db_xref="GeneID:2614858"
/translation="MVYLSAVTLLWAFSFSLIGVYLAGQVDSWFAVWMRVALASLVFI
PFLRFKGVPRALIAKLMAIGGVQLGLMYCFYYQSFLLLSVPEVLLFTVFTPIYVTLIY
DFLKGRFSPWYLVTAFIAVLGAVFIKFAGINEHFVTGFLVVQGANLCFAIGQVGYKYV
MEQESTELPQHTVFGYFYLGALLVASVAFLLLGNPEKLPTTSVQWSILVYLGLIASGL
GYFAWNKGACMVNAGALAIMNNALVPAGLVVNILIWNREVDLVRLSLGGAIILGSLWI
NETWVKRRVERDYQRQGLL"
misc_feature complement(75773..76129)
/locus_tag="VC0075"
/note="EamA-like transporter family; Region: EamA;
cl17759"
/db_xref="CDD:248313"
misc_feature complement(75368..76123)
/locus_tag="VC0075"
/note="Carboxylate/Amino Acid/Amine Transporter; Region:
2A78; TIGR00950"
/db_xref="CDD:233205"
gene complement(76210..76635)
/locus_tag="VC0076"
/db_xref="GeneID:2615765"
CDS complement(76210..76635)
/locus_tag="VC0076"
/note="similar to GB:U00039 SP:P28242 GB:X67639 PID:43280
PID:466632; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="universal stress protein A"
/protein_id="NP_229735.1"
/db_xref="GI:15640108"
/db_xref="GeneID:2615765"
/translation="MSYQHLLVAVDLSEDSKLLVEKAVALAKPLNAEVSFIHIDVNYA
ELYTGLIDINLAETQHHAMEASQKQLQDLAQHANYPIKHTLVGSGDLTNELCETISEF
NVDLLVCGHHQDFWSKLLSSTRQLINSSPVDMLVIPLND"
misc_feature complement(76225..76623)
/locus_tag="VC0076"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature complement(order(76267..76275,76300..76305,76306..76311,
76519..76521,76603..76611))
/locus_tag="VC0076"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene 76681..76776
/locus_tag="VC0077"
/db_xref="GeneID:2615766"
CDS 76681..76776
/locus_tag="VC0077"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229736.1"
/db_xref="GI:15640109"
/db_xref="GeneID:2615766"
/translation="MAIFLSQRSQFDGDGLGDDYNNYRTCYSAFK"
gene 76782..77327
/locus_tag="VC0078"
/db_xref="GeneID:2615268"
CDS 76782..77327
/locus_tag="VC0078"
/note="similar to GB:L42023 SP:P43708 PID:1007433
PID:1221523 PID:1205620; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="ferritin"
/protein_id="NP_229737.1"
/db_xref="GI:15640110"
/db_xref="GeneID:2615268"
/translation="MNQEFFMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDG
AAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQK
ITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFI
DKDLAALAKKGSSSVMDAPAE"
misc_feature 76806..77273
/locus_tag="VC0078"
/note="nonheme-containing ferritins; Region:
Nonheme_Ferritin; cd01055"
/db_xref="CDD:153113"
misc_feature 76818..77231
/locus_tag="VC0078"
/note="Ferritin-like domain; Region: Ferritin; pfam00210"
/db_xref="CDD:201085"
misc_feature order(76848..76850,76944..76949,76956..76958,77079..77081,
77175..77177,77184..77189)
/locus_tag="VC0078"
/note="ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153113"
gene 77403..77726
/locus_tag="VC0079"
/db_xref="GeneID:2614421"
CDS 77403..77726
/locus_tag="VC0079"
/note="'ppGpp-dependent, membrane associated, stress
protein produced under conditions of nutrient deprivation,
osmotic shock and oxidative stress'"
/codon_start=1
/transl_table=11
/product="universal stress protein UspB"
/protein_id="NP_229738.1"
/db_xref="GI:15640111"
/db_xref="GeneID:2614421"
/translation="MISGDTILFALMLVTAINVARYVTALRSLIYIMREAHPLLYQQV
DGRGFFTTHGNVTKQVRLYHYLKSREYHHHHDPVFTGKCDRVRELFILSGSLLVLTTV
VAFML"
misc_feature 77403..77723
/locus_tag="VC0079"
/note="Universal stress protein B (UspB); Region: UspB;
pfam10625"
/db_xref="CDD:119145"
gene 77859..79055
/locus_tag="VC0080"
/db_xref="GeneID:2614422"
CDS 77859..79055
/locus_tag="VC0080"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229739.1"
/db_xref="GI:15640112"
/db_xref="GeneID:2614422"
/translation="MAVMSKTVDVVIIGAGAAGLMCAAQAARRGRQVLLLDHAKKPGR
KILISGGGRCNFTNYDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDH
GQLFCLDSAKEIVDMLLSECDQPNIEQRYQVEISAIAHTEQGFTLQTTIGEIECASLV
VATGGLSMPKLGATPFGYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAPLSGVAIPV
EMRAECGKTFKEALLFTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKE
AHPNQSLKNTLSKVLPKRLVEVLIERQLFADKPLKQYSPKELDAVQTRLEQWSIVPNG
TEGYRTAEVTLGGVDTDCLSSKTMECKTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGY
VAGQWV"
misc_feature 77883..79046
/locus_tag="VC0080"
/note="HI0933-like protein; Region: HI0933_like;
pfam03486"
/db_xref="CDD:202665"
misc_feature <78291..79052
/locus_tag="VC0080"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene complement(79052..79963)
/locus_tag="VC0081"
/db_xref="GeneID:2615256"
CDS complement(79052..79963)
/locus_tag="VC0081"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229740.1"
/db_xref="GI:15640113"
/db_xref="GeneID:2615256"
/translation="MNEKRALSLGLASVLLWSTVATAFKLTLAELNPLQMVTVASIVS
ALALLVICAAMDKLKLIVPTLLANPFYYLLLGLINPLAYYLILFKAYSLLPASQAQAI
NYSWAITLTLMAALFLGQRIRKQDWIACAMSYLGVVVIATKGDLLGLQFESPLGVGLA
LLSTLLWAGYWILNTKNKADPIVGVLLGFLLAIPFALALCWHENLNWQGITTQGWLAV
TYVGLFEMGITFVLWLSALKNTQNTARISNLIFASPFISLFLLATIIGEAIHPTTLIG
LVLIIAGLVVQQWQGRKAQPSEAKLNP"
misc_feature complement(79145..79963)
/locus_tag="VC0081"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
misc_feature complement(79538..79921)
/locus_tag="VC0081"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
misc_feature complement(79145..79432)
/locus_tag="VC0081"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
gene 80077..81618
/locus_tag="VC0082"
/db_xref="GeneID:2615257"
CDS 80077..81618
/locus_tag="VC0082"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229741.1"
/db_xref="GI:15640114"
/db_xref="GeneID:2615257"
/translation="MFNMQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLE
QQLEQQSHWHAQQIQQLNEQLTTAQQELDELDALRDKNEFELKQSHGKLMAVLEKLRY
FEAVKQERQQYADELNQVRAAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLK
QQFEHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTL
VHELRNLQRLNEQMAKEAVNLTQALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQ
VSLQNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAETDSERDSALREHLLA
LRNHIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQNIILVS
PTTLLVALRTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDKANQS
YQGAMNKLVTGRGNAIRQAESFKQLGVEIKRSIPQPLIERAQQAPDQENAPLVERHPI
EDKVN"
misc_feature 80257..81609
/locus_tag="VC0082"
/note="Predicted nuclease of restriction endonuclease-like
fold, RmuC family [General function prediction only];
Region: COG1322"
/db_xref="CDD:31513"
misc_feature 80623..81534
/locus_tag="VC0082"
/note="RmuC family; Region: RmuC; pfam02646"
/db_xref="CDD:111535"
gene 81663..82445
/gene="ubiE"
/locus_tag="VC0083"
/db_xref="GeneID:2614882"
CDS 81663..82445
/gene="ubiE"
/locus_tag="VC0083"
/note="Catalyzes the carbon methylation reaction in the
biosynthesis of ubiquinone"
/codon_start=1
/transl_table=11
/product="ubiquinone/menaquinone biosynthesis
methyltransferase"
/protein_id="NP_229742.1"
/db_xref="GI:15640115"
/db_xref="GeneID:2614882"
/translation="MTDTNVLANSATDNQETTHFGFETVRKDEKVHKVAQVFHSVAAK
YDIMNDLMSGGIHRLWKRFTIDCSGARPGQRILDLGGGTGDLTAKFSRIVGEKGHVIL
ADINNSMLNVGRDKLRDSGVVGNVHYVQANAEELPFPDNYFDCITISFCLRNVTDKDK
ALRSMFRVLKPGGRLLVLEFSKPILEPLSKLYDTYSFHILPKMGQLIANDADSYRYLA
ESIRMHPDQETLKGMMEEAGFEQTTYYNLTGGIVALHRGYKF"
misc_feature 81726..82442
/gene="ubiE"
/locus_tag="VC0083"
/note="Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
/db_xref="CDD:225136"
misc_feature 81945..82193
/gene="ubiE"
/locus_tag="VC0083"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene 82454..83077
/locus_tag="VC0084"
/db_xref="GeneID:2614883"
CDS 82454..83077
/locus_tag="VC0084"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229743.1"
/db_xref="GI:15640116"
/db_xref="GeneID:2614883"
/translation="MSLLATMPLSPLLTAVIETTLNTLINDDPALGRKLLRLKGKVIS
LHLRELNQSLTFVFSQRIDVMTGFEGQPDCYLALNLSILPQLREQANITQLIKQDKLE
LEGDIQLAQKFSELMTDCKPDVEEWLSRITGDVVAHSVVHGVKSIVGALKQQAHKHQN
HLAQVLTEEWRIAPPPLEIAYFCDQVDDVKSHAARLEARLNQLLEKA"
misc_feature 82472..83074
/locus_tag="VC0084"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3165"
/db_xref="CDD:32978"
misc_feature 82514..82804
/locus_tag="VC0084"
/note="SCP-2 sterol transfer family; Region: SCP2;
pfam02036"
/db_xref="CDD:202099"
gene 83074..84708
/gene="ubiB"
/locus_tag="VC0085"
/gene_synonym="aarF; yigQ; yigR"
/db_xref="GeneID:2614859"
CDS 83074..84708
/gene="ubiB"
/locus_tag="VC0085"
/gene_synonym="aarF; yigQ; yigR"
/note="an Escherichia coli mutant results in accumulation
of octaprenylphenol and no ubiquinone; functions in the
formation of 2-octaprenyl-6-hydroxy-phenol from
2-octaprenylphenol in ubiquinone (coenzyme Q)
biosynthesis; similar to eukaryotic proteins that exhibit
kinase functions"
/codon_start=1
/transl_table=11
/product="ubiquinone biosynthesis protein UbiB"
/protein_id="NP_229744.1"
/db_xref="GI:15640117"
/db_xref="GeneID:2614859"
/translation="MKPAELKRLYRIVKVQLEYGLDELLPEHHLTRAPLLARKSLFWL
RNQHADKALGDRLRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDG
LQAKQLIEEELGAPLETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRP
QIDADIKLMYRVARIVAKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRN
FENSEELYVPEVLTDFCNETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFT
QVFRDSFFHADMHPGNVFVNPNHPENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNR
DYRRVAQLHVDSGWVPLDTNVDEFEVAIRMVCEPIFAKPLCEISFGHVLLNLFNTARR
FNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPFLEKWMANQVGPQAFLHALK
ERAPLWFEKMPELPELLYDSLKQGRNLNQRLDNLYQGYRQSKRQQGTGKFLFGVGATL
VVCSAIWISNQLEPLAIGSATIGVLCWLLSWRAYRQ"
misc_feature 83080..84699
/gene="ubiB"
/locus_tag="VC0085"
/gene_synonym="aarF; yigQ; yigR"
/note="putative ubiquinone biosynthesis protein UbiB;
Reviewed; Region: ubiB; PRK04750"
/db_xref="CDD:235310"
misc_feature 83089..84405
/gene="ubiB"
/locus_tag="VC0085"
/gene_synonym="aarF; yigQ; yigR"
/note="2-polyprenylphenol 6-hydroxylase; Region: UbiB;
TIGR01982"
/db_xref="CDD:233667"
gene 84768..85016
/gene="tatA"
/locus_tag="VC0086"
/db_xref="GeneID:2614860"
CDS 84768..85016
/gene="tatA"
/locus_tag="VC0086"
/note="TatA; similar to TatE that is found in some
proteobacteria; part of system that translocates proteins
with a conserved twin arginine motif across the inner
membrane; capable of translocating folded substrates
typically those with bound cofactors; similar to a protein
import system in thylakoid membranes"
/codon_start=1
/transl_table=11
/product="twin-arginine translocation protein TatA"
/protein_id="NP_229745.1"
/db_xref="GI:15640118"
/db_xref="GeneID:2614860"
/translation="MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMS
EEESNSAANQKDADFETKNLEQAKTNASAEVKKDKEQA"
misc_feature 84768..85013
/gene="tatA"
/locus_tag="VC0086"
/note="twin arginine translocase protein A; Provisional;
Region: tatA; PRK04598"
/db_xref="CDD:179867"
gene 85020..85421
/locus_tag="VC0087"
/db_xref="GeneID:2614483"
CDS 85020..85421
/locus_tag="VC0087"
/note="mediates the export of protein precursors bearing
twin-arginine signal peptides"
/codon_start=1
/transl_table=11
/product="sec-independent translocase"
/protein_id="NP_229746.1"
/db_xref="GI:15640119"
/db_xref="GeneID:2614483"
/translation="MFDIGFWELVLIAIVALVVLGPERLPHAIRSVAKFVSAAKSMAN
SVKDELAHELKVQELQENLRKAEQMGMQNLSPELQKSVESLKQAAQEVQRPYAATPSS
EASSTSSNPSSATEPDVRLDSASQPAEKKAE"
misc_feature 85020..>85307
/locus_tag="VC0087"
/note="sec-independent translocase; Provisional; Region:
PRK01770"
/db_xref="CDD:179334"
gene 85510..86262
/locus_tag="VC0088"
/db_xref="GeneID:2614484"
CDS 85510..86262
/locus_tag="VC0088"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229747.1"
/db_xref="GI:15640120"
/db_xref="GeneID:2614484"
/translation="MSSVEQTQPLISHLLELRNRLLKAVAAVVVIFIGLIYFSNEIYE
FVSKPLVERLPAGATMIATDVASPFFTPLKLTLIAAVFLAVPFILYQVWAFVAPGLYK
HERRLIFPLLVSSSLLFYCGVAFAYFVVFPLVFGFFTAISLGGVEFATDIASYLDFVL
ALFLAFGIAFEVPVAIILLCWTGATTPKSLSEKRPYIIVGAFVVGMLLTPPDMISQTL
LAIPMCLLFEVGLFFARFYTRDEADEGQEEEE"
misc_feature 85516..86223
/locus_tag="VC0088"
/note="Sec-independent protein translocase protein (TatC);
Region: TatC; cl00521"
/db_xref="CDD:241922"
gene 86574..87575
/locus_tag="VC0089"
/db_xref="GeneID:2615828"
CDS 86574..87575
/locus_tag="VC0089"
/note="similar to GB:AE000657; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="cytochrome c551 peroxidase"
/protein_id="NP_229748.1"
/db_xref="GI:15640121"
/db_xref="GeneID:2615828"
/translation="MKVVLTSLSLAISLSLAGYAFAASPRNEPVSPILPAQEIHIGKA
ELGKKLYFDPRLSKSGFISCNSCHNLSMGGSDNLKTSIGHNWQQGPINSPTVLNSSLN
IAQFWDGRAADLKEQAGGPIANPGEMAFTHTLAIDVLQSIPAYVSEFRLVFGKPTLDI
DQVTEAIAEFEKTLVTPYSRFDQWLMGDDSAITAQELAGYELFKNSGCVACHNGSALG
GNSFQKMGLIEPYQTNNKVEGLSAVTGADADRFKFKVPTLRNVALTYPYFHDGEAATL
KDAVDIMGRLQLGRKFTDDENGKIVAFLHTLTGEQPSFALPILPPSNDNTPKPQPFD"
misc_feature 86700..87149
/locus_tag="VC0089"
/note="Di-haem cytochrome c peroxidase; Region: CCP_MauG;
pfam03150"
/db_xref="CDD:217389"
misc_feature <87156..87494
/locus_tag="VC0089"
/note="Predicted thiol oxidoreductase [Energy production
and conversion]; Region: COG3488"
/db_xref="CDD:226019"
gene complement(87681..89045)
/locus_tag="VC0090"
/db_xref="GeneID:2615829"
CDS complement(87681..89045)
/locus_tag="VC0090"
/note="similar to SP:P28303 PID:146611 PID:396379
GB:U00096 PID:1790477; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="DNA-damage-inducible protein F"
/protein_id="NP_229749.1"
/db_xref="GI:15640122"
/db_xref="GeneID:2615829"
/translation="MFCVSLILQTLKQPNVHRQVLAIALPMVLSNITVPLLGLVDAAV
IGHLEHAWYLGGVALGSTMISVTFWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGS
VIALGLAALFLLFHRPVAELIFHFSDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGW
LLGTQNARAPMWMVIITNLTNIVLDLLLVLGLGLKVEGAAIASVIADYAGLLFGLLCV
GRYWRQHQLPAPFSFIPSLTKELSRLVALNRDIFLRSLCLQAVFSFMTFQGAALGDDI
VAANAVLMSFLMMISYGMDGFAYAMEAMVGKAIGAKDDRQLRTAMISSTFWATMICLL
LSLIFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMPLIAVWCFLLDGVFIGATKGKE
MRNSMAVSAVAFFAIYGFMTHYGNHALWLAMLSFMALRGFTLGATFYTQWRAGTFLPA
RFSI"
misc_feature complement(87693..88979)
/locus_tag="VC0090"
/note="DNA-damage-inducible SOS response protein;
Provisional; Region: PRK10367"
/db_xref="CDD:182413"
misc_feature complement(88521..88970)
/locus_tag="VC0090"
/note="MatE; Region: MatE; pfam01554"
/db_xref="CDD:190033"
misc_feature complement(87834..88295)
/locus_tag="VC0090"
/note="MatE; Region: MatE; pfam01554"
/db_xref="CDD:190033"
gene complement(89116..89985)
/locus_tag="VC0091"
/db_xref="GeneID:2614434"
CDS complement(89116..89985)
/locus_tag="VC0091"
/note="similar to GB:M80674 SP:P39887 PID:153491;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="O-methyltransferase-like protein"
/protein_id="NP_229750.1"
/db_xref="GI:15640123"
/db_xref="GeneID:2614434"
/translation="MPSYLRFIIIFLSQYRKMSMRHSDSPTSDSYQVPANLVQPLWLR
SRESLVDNGLVYDPIAANACRRCALAQDCLTGDIAQKQLLHVTLTQLCDQQVRHFLDT
HPDGWIINVGAGLDTRFYRVDNGRCHWIEWDITENLLWREKLFHSSERYQLVCGDVMQ
PQGLAELPIPEFAPVLLVCEHALLDCDAQQVARFVRSIGLHFAKASACLVVAGDKTSS
YLGQKLGCEAYAHGFTCAGDAIINCLPWAKSVRTFSPLDRHCDRWKFWQRAIARSGIY
KTRLTPVVVNLDW"
misc_feature complement(89119..89982)
/locus_tag="VC0091"
/note="O-Methyltransferase involved in polyketide
biosynthesis [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: COG3315"
/db_xref="CDD:33124"
gene complement(90013..90642)
/locus_tag="VC0092"
/db_xref="GeneID:2614435"
CDS complement(90013..90642)
/locus_tag="VC0092"
/EC_number="3.4.21.88"
/note="Represses a number of genes involved in the
response to DNA damage"
/codon_start=1
/transl_table=11
/product="LexA repressor"
/protein_id="NP_229751.1"
/db_xref="GI:15640124"
/db_xref="GeneID:2614435"
/translation="MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGFRSANAAE
EHLKALARKQVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPILAQEHVE
AHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVARVEDDV
TVKRLERKGSKVFLHAENEEFAPIEVDLAAQSLTIEGIAVGVIRNSTWM"
misc_feature complement(90028..90636)
/locus_tag="VC0092"
/note="LexA repressor; Validated; Region: PRK00215"
/db_xref="CDD:234688"
misc_feature complement(90448..90636)
/locus_tag="VC0092"
/note="LexA DNA binding domain; Region: LexA_DNA_bind;
pfam01726"
/db_xref="CDD:201938"
misc_feature complement(90043..90291)
/locus_tag="VC0092"
/note="Peptidase S24 LexA-like proteins are involved in
the SOS response leading to the repair of single-stranded
DNA within the bacterial cell. This family includes: the
lambda repressor CI/C2 family and related bacterial
prophage repressor proteins; LexA (EC...; Region:
S24_LexA-like; cd06529"
/db_xref="CDD:119397"
misc_feature complement(order(90154..90156,90265..90267))
/locus_tag="VC0092"
/note="Catalytic site [active]"
/db_xref="CDD:119397"
gene 90962..93388
/locus_tag="VC0093"
/db_xref="GeneID:2615770"
CDS 90962..93388
/locus_tag="VC0093"
/EC_number="2.3.1.15"
/note="PlsB; catalyzes the formation of 1-acyl-sn-glycerol
3-phosphate by transfering the acyl moiety from acyl-CoA"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate acyltransferase"
/protein_id="NP_229752.2"
/db_xref="GI:161582036"
/db_xref="GeneID:2615770"
/translation="MSSGHLLSRSLLKLPMSVLVKGTAIPSNPIQDLDIDTHKPVIYA
LPFRSNVDLLTLQTHAKEAGLPDPLEPLMLNGKAFQRYVFIASRPTLLSSDQHVPSDS
IALFSELLTEHKLDSELDVQVIPATVLWGRKPGKEGQERPYLQALNGPEKALAVLASG
RDCLVRFSPVVSMRYMADTHGTDASIAHKLARVARIHFSRQKLAASGPNLPQRAQLFA
RLMNSPAIEKAIADEAKSKQIPLEKARKEAHDILDEIAADFSYSLVKKGDRILGWLWN
RIYQGLNINNAATVRRLAQDGHEIVYVPCHRSHMDYLLLSYVLYHEGMVPPHIAAGIN
LNFFPAGPIFRRGGAFFIRRSFKGAPLYSTIFREYLAELFAKGYSVEYFSEGGRSRTG
RLLPAKTGMLAMTIQAMLRGLNRPVTLVPVYIGYEHVMEVGTYAKELRGKRKEKENAG
LVLRTLRKLRNFGQGYVNFGEPIPLNQFLNETVPQWTQDIDPMGESKPQWMTPTVNKL
ANRMMTHINDAAAVNAMTLCATALLASRQRALARDNLIKQVDCYLSLLRNVPYSATST
LPSESAEKLVEHAESLDKFVVETDTMGDIISLDRNQSILMTYYRNNIIHLLALPSLIA
QLLIRQQSVSLEKVQATVAQIYPFLKQELFLRFEAEELNDLVLRYVAELARQGLVTVE
GKTVTLNQAQTQVLMLLGRIISETLQRYAIALNLLVSCPHLGKAELEEKSQEVAQRLG
RLHGINAPEFFDKGVFASLFVTLQEQGYLDDQGRCVLETAKPLSRQLYALIYPEVRMT
IQESLCQVDA"
misc_feature 90992..93358
/locus_tag="VC0093"
/note="glycerol-3-phosphate O-acyltransferase; Region:
plsB; TIGR03703"
/db_xref="CDD:234317"
misc_feature 91796..92401
/locus_tag="VC0093"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: GPAT-like; Region:
LPLAT_DHAPAT-like; cd07993"
/db_xref="CDD:153255"
misc_feature order(91877..91879,91886..91888,91892..91894,91955..91966,
92117..92125)
/locus_tag="VC0093"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153255"
gene complement(93464..94318)
/gene="ubiA"
/locus_tag="VC0094"
/db_xref="GeneID:2615771"
CDS complement(93464..94318)
/gene="ubiA"
/locus_tag="VC0094"
/note="'catalyzes the conversion of 4-Hydroxybenzoate into
3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone
biosynthesis pathway'"
/codon_start=1
/transl_table=11
/product="4-hydroxybenzoate octaprenyltransferase"
/protein_id="NP_229753.1"
/db_xref="GI:15640126"
/db_xref="GeneID:2615771"
/translation="MTAVKARAYWQLMRMDRPIGSLLLLWPTLWALLLAAQGLPDLRV
LVVFVLGVFLMRSAGCVINDYADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVS
SFLLVLTMNTLTIQLSFIGILLAFVYPFMKRFTHLPQLVLGLAFSWSIPMAWAAQANT
LTPQVWVLFLINALWTIAYDTQYAMVDRDDDVKIGIKSTAILFGRWDKRIIGLLQLAT
LSLLVALGQGLALGTSYYWGLLIAAGLFAYQQHLIRYRERMPCFQAFLNNNYVGMAIT
AGILLSVW"
misc_feature complement(93473..94306)
/gene="ubiA"
/locus_tag="VC0094"
/note="4-hydroxybenzoate octaprenyltransferase; Reviewed;
Region: ubiA; PRK12848"
/db_xref="CDD:237229"
misc_feature complement(<93704..94156)
/gene="ubiA"
/locus_tag="VC0094"
/note="UbiA prenyltransferase family; Region: UbiA;
pfam01040"
/db_xref="CDD:216260"
gene complement(94319..94870)
/locus_tag="VC0095"
/db_xref="GeneID:2615822"
CDS complement(94319..94870)
/locus_tag="VC0095"
/note="similar to GB:U00006 SP:P26602 GB:M96268 GB:X57434
GB:X66619; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="chorismate--pyruvate lyase"
/protein_id="NP_229754.1"
/db_xref="GI:15640127"
/db_xref="GeneID:2615822"
/translation="MNNSMNQLTSLYLAALNRVTWQQPDDIEFPAPLAQQWLLEQGSL
SRRMATQCEHLTVDLLSNQIMLADTLSYDETQLLASEEYLLRQVIIYGDQQPWVFGHT
LIPRSSMHNQPFDFTQQGKIPLGLTVFSADNVKRDALQVGWVETELGRLLARRSRLWM
NNKPMLVTELFLATSPIYSKERV"
misc_feature complement(94322..94828)
/locus_tag="VC0095"
/note="Chorismate lyase; Region: Chor_lyase; pfam04345"
/db_xref="CDD:113128"
gene complement(94893..94991)
/locus_tag="VC0096"
/db_xref="GeneID:2615823"
CDS complement(94893..94991)
/locus_tag="VC0096"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229755.1"
/db_xref="GI:15640128"
/db_xref="GeneID:2615823"
/translation="MVNKMLSAFELFGLESKSELYCIPKLGGIAGS"
gene 95062..95472
/locus_tag="VC0097"
/db_xref="GeneID:2615791"
CDS 95062..95472
/locus_tag="VC0097"
/note="similar to GB:AE000657; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="flagellar basal body protein FliL"
/protein_id="NP_229756.1"
/db_xref="GI:15640129"
/db_xref="GeneID:2615791"
/translation="MLKRYVVQIMLALSFIVPFHSHAEEKSAVPQLAYFTLEPDLTTN
FFTKGNKLGYIQVRIDIMVANAADLPVVEQHQPLIRDAVVELLGKQTEDTIKSLAGRE
DLRKSLVNRLNNILLPEVGRTVIADLLFTKYIYQ"
misc_feature 95065..95469
/locus_tag="VC0097"
/note="flagellar basal body-associated protein FliL-like
protein; Validated; Region: PRK05697"
/db_xref="CDD:235565"
gene complement(95592..97571)
/locus_tag="VC0098"
/db_xref="GeneID:2615792"
CDS complement(95592..97571)
/locus_tag="VC0098"
/note="similar to SP:P07017 PID:145521 GB:U00096
PID:1736539 PID:1736545; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="NP_229757.1"
/db_xref="GI:15640130"
/db_xref="GeneID:2615792"
/translation="MGLLARLFSTAPHHPTQPAEVKPDPLMQSPVTTETTALQPEPQV
APYQTDLALTTPESDLTPQVNQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSA
EAMVGADFANLWRTHQQPSVQRLLQDAKKGHPVSAELQLSRSQEAIWIKADLYPIKAI
NGQLQNVVVLLQDITAAKLEKIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVG
YQLDEIQGRHHSMFVDEQYKQSQEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASY
NPIMDSEGKPYKVVKYATNVTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELG
EVISQFIVTLRQIITDINSVAATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEE
LNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTMASINESAQKIADIIGVID
GIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSANAAKDIKALISDSVSK
ISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQATGINEVNQAVNQMDEMTQ
QNAALVEEAAAASESLLAQAEQLYDHVAMFRLPDQDTSAPSLLKAVNKRPQSAPVTRH
PASHIAKTPAKITAKASSRAQPVMQVAHDEEWESF"
misc_feature complement(97044..97340)
/locus_tag="VC0098"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:222120"
misc_feature complement(97050..97325)
/locus_tag="VC0098"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature complement(order(97137..97139,97149..97151,97224..97235,
97272..97274,97290..97292,97302..97304))
/locus_tag="VC0098"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature complement(order(97110..97112,97116..97118,97194..97199,
97206..97208,97230..97232,97242..97244))
/locus_tag="VC0098"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature complement(96702..96995)
/locus_tag="VC0098"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature complement(96678..96983)
/locus_tag="VC0098"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:222120"
misc_feature complement(order(96771..96773,96783..96785,96867..96878,
96915..96917,96933..96935,96945..96947))
/locus_tag="VC0098"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature complement(order(96744..96746,96750..96752,96831..96836,
96843..96845,96873..96875,96885..96887))
/locus_tag="VC0098"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature complement(96525..96665)
/locus_tag="VC0098"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:242275"
misc_feature complement(95883..96443)
/locus_tag="VC0098"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(95889..95894,95898..95903,95910..95915,
95919..95924,95931..95933,95940..95945,95952..95954,
95961..95966,95973..95978,95982..95987,95994..95996,
96003..96008,96015..96017,96024..96029,96066..96071,
96078..96083,96087..96092,96099..96104,96111..96113,
96120..96125,96132..96134,96141..96143,96153..96155,
96174..96176,96183..96185,96195..96197,96204..96209,
96216..96218,96225..96227,96234..96239,96246..96251,
96258..96260,96267..96272,96276..96278,96288..96293,
96297..96302,96309..96311,96318..96323,96330..96335,
96342..96344,96351..96356,96363..96365,96372..96377,
96381..96386,96393..96395,96402..96407,96414..96419))
/locus_tag="VC0098"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(96108..96209)
/locus_tag="VC0098"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(97946..98779)
/locus_tag="VC0099"
/db_xref="GeneID:2615363"
CDS complement(97946..98779)
/locus_tag="VC0099"
/note="similar to GB:M54940 SP:P09391 GB:M96795 PID:146185
PID:146193; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="glpG protein"
/protein_id="NP_229758.1"
/db_xref="GI:15640131"
/db_xref="GeneID:2615363"
/translation="MHLLTTFNNPRAAQAFIDYMAAHHIEIQMMPDAGGQFTLWVIQD
QHIETAQAELALFLENPYAEKYQAASWEVADQKRPQFHYASPNLLSLIKAKAGVFTLF
IMALCIIIFTLQTFGAGDEVFNALHFPALAGQQWQIWRWVSHALLHFSVMHIAFNLLW
WWQFGGDLEQRLGSVRLIKLFVVSAIISGAGQYWVEGANFGGLSGVVYALAGYLWILG
QRAPQLGLSIPRSLMGFMLIWLVLGYVQPFMAIANTAHLAGLISGVVLAWFDSQRDQQ
A"
misc_feature complement(98474..98779)
/locus_tag="VC0099"
/note="Protein of unknown function (DUF3582); Region:
DUF3582; pfam12122"
/db_xref="CDD:221430"
misc_feature complement(97961..98773)
/locus_tag="VC0099"
/note="rhomboid family protease GlpG; Region: rhombo_GlpG;
TIGR04239"
/db_xref="CDD:234518"
misc_feature complement(97949..98497)
/locus_tag="VC0099"
/note="Membrane associated serine protease [Amino acid
transport and metabolism]; Region: COG0705"
/db_xref="CDD:223777"
gene complement(98786..99106)
/gene="glpE"
/locus_tag="VC0100"
/db_xref="GeneID:2615364"
CDS complement(98786..99106)
/gene="glpE"
/locus_tag="VC0100"
/EC_number="2.8.1.1"
/note="belongs to rhodanese family; thiosulfate
thiotransferase; in Escherichia coli this enzyme catalyzes
the formation of thiocyanate from thiosulfate and cyanide
with low efficiency; contains an active site cysteine"
/codon_start=1
/transl_table=11
/product="thiosulfate sulfurtransferase"
/protein_id="NP_229759.1"
/db_xref="GI:15640132"
/db_xref="GeneID:2615364"
/translation="MDHFLHIDVNAAQAMMEQKQAHLVDIRDPQSFQLAHAKNAYHLT
NQSMVQFMEQAEFDQPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRANLP
IEAS"
misc_feature complement(98813..99091)
/gene="glpE"
/locus_tag="VC0100"
/note="GlpE sulfurtransferase (ST) and homologs are
members of the Rhodanese Homology Domain superfamily.
Unlike other rhodanese sulfurtransferases, GlpE is a
single domain protein but indications are that it
functions as a dimer. The active site contains a...;
Region: GlpE_ST; cd01444"
/db_xref="CDD:238721"
misc_feature complement(98912..98914)
/gene="glpE"
/locus_tag="VC0100"
/note="active site residue [active]"
/db_xref="CDD:238721"
gene complement(99187..99402)
/locus_tag="VC0101"
/db_xref="GeneID:2615768"
CDS complement(99187..99402)
/locus_tag="VC0101"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229760.1"
/db_xref="GI:15640133"
/db_xref="GeneID:2615768"
/translation="MDNSVINFFIHCHQTAYFKALLQFIDWGYFQNYPQQNQDHRYIL
WIENHKTTLSTQFTGLPTGAVILITSG"
gene complement(99867..100634)
/locus_tag="VC0103"
/db_xref="GeneID:2615361"
CDS complement(99867..100634)
/locus_tag="VC0103"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229762.1"
/db_xref="GI:15640135"
/db_xref="GeneID:2615361"
/translation="MIDTHAHVYASEFDHDRDEVIARARQVGIEKILMPNIDLNSIAP
MLATEKAYPDLCHSMMGLHPCYVDANVKQTLATIYEWFSRHTFIAVGEIGIDLYWDKT
FKAEQEMAFLTQLNWAKELDLPVVIHTRDSLNETLALLKQAQDGRLRGVFHCFGGSVD
EAKAINDLGFHLGIGGVSTFKNSGMDQVIPQLDLNYVILETDCPYLAPVPHRGKRNEP
MLTHLISEKVAQLRSLPLGEVIKITNNNSKALFGLDK"
misc_feature complement(99879..100634)
/locus_tag="VC0103"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:238635"
misc_feature complement(order(100029..100031,100176..100178,
100251..100253,100614..100616,100620..100622))
/locus_tag="VC0103"
/note="active site"
/db_xref="CDD:238635"
gene 100811..101854
/locus_tag="VC0105"
/db_xref="GeneID:2615296"
CDS 100811..101854
/locus_tag="VC0105"
/EC_number="4.2.1.24"
/note="catalyzes the formation of porphobilinogen from
5-aminolevulinate"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="NP_229764.1"
/db_xref="GI:15640137"
/db_xref="GeneID:2615296"
/translation="MSVSIQGQFPGRRLRRLRKHDFSRRLVAENQLSVNDLIYPMFIL
MGKDRREKVDSMPGVERLSIDLMLEEAQYLANLGVPAIALFPVVNQDAKSLCAAEAYN
PEGLVQRAVRALKEHVPQMGVITDVALDPFTTHGQDGIIDEQGYVLNDETTEVLVKQA
LSHAQAGADVVAPSDMMDGRIGRIRQALEEAGYIHTQIMAYSAKYASNYYGPFRDAVG
SSANLKGGNKKNYQMDPANSDEALHEVAMDINEGADMVMVKPGMPYLDVVRRVKTELQ
VPTFAYQVSGEYAMHKAAIMNGWLKERETVFESLLCFKRAGADGILTYFAKEVAEWLA
EDSAKAAQFLPKK"
misc_feature 100844..101812
/locus_tag="VC0105"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region:
ALAD_PBGS_aspartate_rich; cd04823"
/db_xref="CDD:240127"
misc_feature order(100847..100855,100862..100867,100892..100900,
100970..100972,100979..100981,101255..101260,
101339..101344,101429..101437,101498..101503,
101510..101521,101528..101530,101537..101542,
101594..101608,101678..101680,101723..101725,
101732..101734,101744..101746,101753..101755)
/locus_tag="VC0105"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240127"
misc_feature order(100847..100849,101342..101344,101540..101542,
101552..101554)
/locus_tag="VC0105"
/note="allosteric magnesium binding site [ion binding];
other site"
/db_xref="CDD:240127"
misc_feature order(101186..101188,101192..101194,101198..101200,
101222..101224,101330..101332,101420..101422,
101438..101440,101447..101452,101465..101467,
101492..101494,101504..101506,101585..101587,
101654..101656,101663..101665,101780..101782)
/locus_tag="VC0105"
/note="active site"
/db_xref="CDD:240127"
misc_feature order(101198..101200,101222..101224,101333..101335)
/locus_tag="VC0105"
/note="aspartate-rich active site metal binding site;
other site"
/db_xref="CDD:240127"
misc_feature order(101420..101422,101585..101587)
/locus_tag="VC0105"
/note="Schiff base residues; other site"
/db_xref="CDD:240127"
gene 101958..102389
/locus_tag="VC0106"
/db_xref="GeneID:2615297"
CDS 101958..102389
/locus_tag="VC0106"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229765.1"
/db_xref="GI:15640138"
/db_xref="GeneID:2615297"
/translation="MMLIREGSLSEIVQIVEKIHEFAQKETEQSLQARLNDKTCLVLV
AENESELLGFKMGYELDNKTFYSWFGGVTPAARGHGVAQRLLDVQEKWALEQGYQRIK
VKSRNQFPAMLRLLIKNGYLIEDYEKKESIIESRIHFVKVL"
misc_feature 102081..102260
/locus_tag="VC0106"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(102168..102173,102201..102206)
/locus_tag="VC0106"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 103098..105902
/locus_tag="VC0108"
/db_xref="GeneID:2614459"
CDS 103098..105902
/locus_tag="VC0108"
/note="'has 3'-5' exonuclease, 5'-3' exonuclease and
5'-3'polymerase activities, primarily functions to fill
gaps during DNA replication and repair'"
/codon_start=1
/transl_table=11
/product="DNA polymerase I"
/protein_id="NP_229767.1"
/db_xref="GI:15640140"
/db_xref="GeneID:2614459"
/translation="MAHIPDNPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVN
MIRSMMRQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAM
GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVL
DREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANL
DKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALM
SLYGKLAFKSWLTELLDGGTGIVTADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQ
YQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAH
DYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQ
SYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDAD
VTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIAL
RLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL
DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQ
NIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHA
ATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFE
RYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGT
AADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA
ELAVPLVAEAGHGDNWEQAH"
misc_feature 103116..105899
/locus_tag="VC0108"
/note="DNA polymerase I; Provisional; Region: PRK05755"
/db_xref="CDD:235591"
misc_feature 103122..103622
/locus_tag="VC0108"
/note="PIN domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: PIN_53EXO; cd09859"
/db_xref="CDD:189029"
misc_feature order(103134..103136,103284..103286,103434..103436,
103440..103445,103509..103511,103515..103517)
/locus_tag="VC0108"
/note="active site"
/db_xref="CDD:189029"
misc_feature order(103134..103136,103440..103442,103509..103511)
/locus_tag="VC0108"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 103302..103340
/locus_tag="VC0108"
/note="putative 5' ssDNA interaction site; other site"
/db_xref="CDD:189029"
misc_feature order(103434..103436,103443..103445)
/locus_tag="VC0108"
/note="metal binding site 3; metal-binding site"
/db_xref="CDD:189029"
misc_feature order(103509..103511,103515..103517)
/locus_tag="VC0108"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 103614..103853
/locus_tag="VC0108"
/note="H3TH domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: H3TH_53EXO; cd09898"
/db_xref="CDD:188618"
misc_feature order(103644..103667,103671..103700,103704..103715)
/locus_tag="VC0108"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:188618"
misc_feature order(103650..103652,103659..103661)
/locus_tag="VC0108"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:188618"
misc_feature 104145..104729
/locus_tag="VC0108"
/note="DEDDy 3'-5' exonuclease domain of Escherichia coli
DNA polymerase I and similar bacterial family-A DNA
polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139"
/db_xref="CDD:176651"
misc_feature order(104175..104186,104193..104195,104367..104372,
104376..104384,104481..104486,104529..104534,
104601..104603,104613..104615)
/locus_tag="VC0108"
/note="active site"
/db_xref="CDD:176651"
misc_feature order(104175..104177,104181..104183,104382..104384,
104601..104603,104613..104615)
/locus_tag="VC0108"
/note="catalytic site [active]"
/db_xref="CDD:176651"
misc_feature order(104178..104186,104193..104195,104367..104372,
104376..104381,104481..104486,104529..104534,
104601..104603,104613..104615)
/locus_tag="VC0108"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176651"
misc_feature 104766..105887
/locus_tag="VC0108"
/note="Polymerase I functions primarily to fill DNA gaps
that arise during DNA repair, recombination and
replication; Region: DNA_pol_A_pol_I_C; cd08637"
/db_xref="CDD:176474"
misc_feature order(105003..105005,105015..105017,105024..105029,
105102..105110,105114..105116,105120..105131,
105225..105230,105312..105314,105372..105374,
105384..105386,105636..105638,105657..105659,
105753..105761)
/locus_tag="VC0108"
/note="active site"
/db_xref="CDD:176474"
misc_feature order(105003..105005,105015..105017,105024..105029,
105102..105110,105114..105116,105120..105131,
105408..105410,105633..105638,105645..105647,
105657..105659,105753..105761)
/locus_tag="VC0108"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176474"
misc_feature order(105225..105230,105234..105236,105312..105314,
105372..105374,105384..105386,105759..105761)
/locus_tag="VC0108"
/note="catalytic site [active]"
/db_xref="CDD:176474"
gene complement(106649..107311)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/db_xref="GeneID:2614107"
CDS complement(106649..107311)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="binds guanine nucleotides; in Escherichia coli
depletion results in defective cell division and
filamentation; in Bacillus subtilis this gene is
essential"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTP-binding protein YsxC"
/protein_id="NP_229770.1"
/db_xref="GI:15640143"
/db_xref="GeneID:2614107"
/translation="MSVKIHYQNTHFITSAPDIRHLPEDEGIEIAFAGRSNAGKSSSL
NRLTNQKNLAKTSKTPGRTQLINLFKVADGCHIVDLPGYGFAQVPLEMKLKWQRALGE
YLQKRQSLKGLVVLMDIRHPMKDLDQQLIIWAVECGIPVQVMLTKADKLKSGARKAQV
LKVREEAKTFGGDVAVDAFSSLSGIGVDTLRAKLDEWYAPMLAALAEQEEGEQPESST
DQ"
misc_feature complement(106721..107227)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature complement(107189..107212)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(106769..106774,106865..106867,
106871..106873,107075..107077,107123..107131,
107138..107146,107186..107206))
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature complement(107114..107134)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature complement(107123..107125)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature complement(107066..107077)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(106982..106987,106994..107038,
107057..107068))
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature complement(106865..106876)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature complement(106766..106774)
/gene="engB"
/locus_tag="VC0111"
/gene_synonym="yihA; ysxC"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene 107409..108080
/locus_tag="VC0112"
/db_xref="GeneID:2614108"
CDS 107409..108080
/locus_tag="VC0112"
/note="similar to GB:U05988 PID:516878 SP:Q52369;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="cytochrome c4"
/protein_id="NP_229771.1"
/db_xref="GI:15640144"
/db_xref="GeneID:2614108"
/translation="MRGTPEWYWKLDNYKWNVMKKLALILSVLASCSVWAQGSIEAGK
AKSLTCAACHGADGNSPLTIYPKLAGQHEKYLEKQLKELKLGASSGGKQGRYDPVMSA
MAMPLSDEDIADLAAYYASMPISGNTTPEDVVAQGKVLYTAGDASRGLTACIACHGPR
GNGTELSGFPKISGQHADYIKAQLEKFRSGTRANDMNEMMRDVAHKLTDADIDILSKY
VGGLH"
misc_feature 107463..107837
/locus_tag="VC0112"
/note="Cytochrome c553 [Energy production and conversion];
Region: COG2863"
/db_xref="CDD:32690"
misc_feature 107835..>108062
/locus_tag="VC0112"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene 108252..108920
/locus_tag="VC0113"
/db_xref="GeneID:2614423"
CDS 108252..108920
/locus_tag="VC0113"
/note="similar to SP:P37431 PID:295895; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="methyltransferase-like protein"
/protein_id="NP_229772.1"
/db_xref="GI:15640145"
/db_xref="GeneID:2614423"
/translation="MLRIPLEEVSMHLCPLCHSENSQAYFADKQRDYFQCQQCELVYV
NPEQRLSAEREKGFYDLHQNIPSDEGYRRFLSRVCSPMLERVPPQSQGLDFGCGPGPT
LSLMLEEAGHSMALYDIFYHPDTQVLNRQYDFMTATEVIEHLHDPHRVWQQWLNLVKP
GGWIGLMTKMVKDLDAFAGWHYKNDLTHVIFFSRATFQYLAERDQLELEFIGNDVILL
RKTQ"
misc_feature 108462..108878
/locus_tag="VC0113"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature 108528..108743
/locus_tag="VC0113"
/note="Methyltransferase domain; Region: Methyltransf_11;
pfam08241"
/db_xref="CDD:203885"
gene 108920..109468
/locus_tag="VC0114"
/db_xref="GeneID:2614424"
CDS 108920..109468
/locus_tag="VC0114"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229773.1"
/db_xref="GI:15640146"
/db_xref="GeneID:2614424"
/translation="MSRSKKSRKPGTNSNDQLVVVRTRSESELESRLRKKLKKRKGLK
SGSRHSEGSESQVRQAAQKRDPRLGSKKPIPLIVAEPKKLNKQERKLAAEQELAMLEK
DAQLNVLLDRLDNGEKLGIGLQKYVDEKLDRIEVLMEQLGLLDDEPEPAPAPQSKPTK
KRKTEDDLLSEFEQLDVDKYQD"
misc_feature <109064..109462
/locus_tag="VC0114"
/note="Der GTPase activator; Provisional; Region:
PRK05244"
/db_xref="CDD:235370"
gene 109475..109966
/locus_tag="VC0115"
/db_xref="GeneID:2614870"
CDS 109475..109966
/locus_tag="VC0115"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229774.1"
/db_xref="GI:15640147"
/db_xref="GeneID:2614870"
/translation="MMNGMLLASVGGAIIVALASYAAYLLWQVKKQQALQRQQQQLAI
EKRNANIFDSVNILCMAGIQGQCDLSEISIRVYCIMDYVQGEQRINFEQEYPAISELY
HVVKNMPRGEARQQLPKQERMKQNLERTKAESRLQDAIIVELTALKQRIQPLNNQIAI
QMV"
misc_feature 109517..109915
/locus_tag="VC0115"
/note="Protein of unknown function (DUF2489); Region:
DUF2489; pfam10675"
/db_xref="CDD:151176"
gene 110051..111493
/locus_tag="VC0116"
/db_xref="GeneID:2614871"
CDS 110051..111493
/locus_tag="VC0116"
/note="catalyzes the oxygen-independent formation of
protoporphyrinogen-IX from coproporphyrinogen-III"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="NP_229775.1"
/db_xref="GI:15640148"
/db_xref="GeneID:2614871"
/translation="MSCGRIARQELSKTERFIMSSYVVPSQQIVWDQAILDKYNYSGP
RYTSYPTAVEFHEAFTIADFDMACTQYPERPLSLYIHIPFCHKLCYYCGCNKVITRHS
HKADEYLDVLEHEIRQRASLLIGRNVTQLHFGGGTPTFLTNAQISRLMTLLHSEFHFA
DEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGVQDFNKEVQKLVNREQDEQFIFDLV
ERAKQLGFRSTNLDLIYGLPKQTAVTFAQTLQQVLTMQPGRLSVFNYAHMPQLFAAQR
KIKEADLPAAEEKLAILQQTITTLTGAGYQFIGMDHFALPDDELAIAQRSGILHRNFQ
GYTTQGECDLVGFGVSAISMVGDAYAQNQKELKKYYAQVNEMRHALWKGVTLDKDDLL
RREVIKQLICNFKLDKTAIEREFNLRFNHYFRQDLALLQTFIDDGLVTVDERMIEVTL
RGRLLIRNICMCFDKYLRERARQQQFSRVI"
misc_feature 110129..111490
/locus_tag="VC0116"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK09249"
/db_xref="CDD:181727"
misc_feature 110303..110860
/locus_tag="VC0116"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(110303..110305,110309..110311,110315..110317,
110321..110329,110450..110452,110456..110461,
110552..110560,110627..110629,110750..110752,
110840..110845)
/locus_tag="VC0116"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 111206..111412
/locus_tag="VC0116"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(111557..112753)
/locus_tag="VC0117"
/db_xref="GeneID:2614462"
CDS complement(111557..112753)
/locus_tag="VC0117"
/note="similar to GB:M87049 SP:P09128 GB:X12614 PID:148201
PID:41669; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="hemY protein"
/protein_id="NP_229776.1"
/db_xref="GI:15640149"
/db_xref="GeneID:2614462"
/translation="MIRLIFLFVVLGLGLFVGTQYAGQQGYVLISIANRTIEMSVTTL
VIFIIGALAALFALEFLVKKILYTSFHTWNWFSVRKQRRSRRYTNEGIIKLLEGDWTQ
AEKKVTRWANHHDMPLLCYLVASEAANGMGDRAKRDRYLALAAQQNNSTLAVELTRAK
QQLGDGDNQAALETLTQLQRNHPHNTVVLNLLKQCYQALGEWQPLLALLPKLVKAKRL
SNEEAQQLEITAQRGILQDIASPKGSEGLMQHWAQLSRKLKAEPELLMCFITQLIQRK
ADYEAFSMIKESLKKQATPELYALLPELNISDRHPLIALLQEALRRDGNNAEAHSALG
QLYLREKHWADAQKHLEKALSLRSSVSDYAYLADALEKQNFTRAAHDVSRKALSLLES
PSAQSS"
misc_feature complement(111560..112753)
/locus_tag="VC0117"
/note="Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism]; Region: HemY; COG3071"
/db_xref="CDD:225613"
misc_feature complement(112355..112678)
/locus_tag="VC0117"
/note="HemY protein N-terminus; Region: HemY_N; pfam07219"
/db_xref="CDD:191703"
misc_feature complement(111578..111817)
/locus_tag="VC0117"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature complement(order(111596..111598,111605..111607,
111617..111619,111653..111655,111695..111697,
111704..111706,111716..111718,111752..111754,
111797..111799,111806..111808))
/locus_tag="VC0117"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature complement(order(111635..111640,111647..111652,
111659..111664,111737..111742,111749..111754,
111758..111763))
/locus_tag="VC0117"
/note="binding surface"
/db_xref="CDD:238112"
gene complement(112750..113949)
/locus_tag="VC0118"
/db_xref="GeneID:2615138"
CDS complement(112750..113949)
/locus_tag="VC0118"
/note="similar to GB:M87049 SP:P09127 GB:X12614 GB:X13406
PID:148202; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="uroporphyrin-III C-methyltransferase"
/protein_id="NP_229777.1"
/db_xref="GI:15640150"
/db_xref="GeneID:2615138"
/translation="MTNNNKPQQEPEITVNPSSAAVTPPTAPDKQDSPAPNQPAAKKT
LDSTPAQDKPPQPNSQGKKLASVALLLVLALGAGFAYVHQQQKSEFNNQLQAVRAELK
QTRDALNAQLEQTVSKATSQATEITHRAETVLEQQQKSIESLQLAVADIKGRRPNDWL
LAEADYLVKLAGRKLFLEHDVETATQLMESADQRIAALNDPSLTALRKAMANDITTLK
NIPLIDRDGLVLRLISLQQQIDSLPLANAILPADQPQTSQAVSENIDDWQTNLKNSLK
AFADNFITFRSRDGNVIPLLSPTQHFYLRENLQAKLETAIKGVYTEQQTLYRIALDTA
AQWSTSFFNPDDKAVQSFNAALAQLAEQQVQVEYPVKLQAQQQLADVINERLRRSVSP
LTTGAEQ"
misc_feature complement(112759..113853)
/locus_tag="VC0118"
/note="HemX; Region: HemX; pfam04375"
/db_xref="CDD:113156"
misc_feature complement(112789..113814)
/locus_tag="VC0118"
/note="putative uroporphyrinogen III C-methyltransferase;
Provisional; Region: PRK10920"
/db_xref="CDD:236795"
gene complement(113933..114715)
/gene="hemD"
/locus_tag="VC0119"
/db_xref="GeneID:2615139"
CDS complement(113933..114715)
/gene="hemD"
/locus_tag="VC0119"
/EC_number="4.2.1.75"
/note="catalyzes the formation of uroporphyrinogen-III
from hydroxymethylbilane; functions in tetrapyrrole and
heme biosynthesis"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen-III synthase"
/protein_id="NP_229778.1"
/db_xref="GI:15640151"
/db_xref="GeneID:2615139"
/translation="MIESVMTVLVTRPDEQGAELCQLLHQQGIPALHHPLLAISASPQ
LAALAEDLSSFDIIIAVSQHAVIFSDQFLQHRRICWPNNAIYLAVGQKTAHVFSKACQ
QSVDYPEISDSEHLLALSMLRDVAGKKVLILRGNGGRELIYSTLVERGATVRYQEAYC
RHERPFAAAECVQKWQLAKVDSLVITSSEQLAFFIRQFETSHLPWVQQLTLLVPSQRI
ATLAHQLGFHRIVVTLSAANRDLVAALMPEKPTGTLSNDQQQ"
misc_feature complement(113972..114700)
/gene="hemD"
/locus_tag="VC0119"
/note="uroporphyrinogen-III synthase; Reviewed; Region:
hemD; PRK05928"
/db_xref="CDD:180313"
misc_feature complement(113981..114694)
/gene="hemD"
/locus_tag="VC0119"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature complement(order(114146..114160,114233..114235,
114239..114241,114311..114313,114440..114442,
114524..114532,114680..114682))
/gene="hemD"
/locus_tag="VC0119"
/note="active site"
/db_xref="CDD:119440"
gene complement(114761..115714)
/gene="hemC"
/locus_tag="VC0120"
/db_xref="GeneID:2614463"
CDS complement(114761..115714)
/gene="hemC"
/locus_tag="VC0120"
/EC_number="2.5.1.61"
/note="transformation of porphobilinogen to
hydroxymethylbilane in porphyrin biosynthesis"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="NP_229779.1"
/db_xref="GI:15640152"
/db_xref="GeneID:2614463"
/translation="MDRNIIMTETPIRIATRQSPLALWQANYVKDALMAAHPGLQVEL
VTMVTRGDVILDTPLAKVGGKGLFVKELEIAMLEGRADLAVHSMKDVPVDFPDGLGLV
TICEREDPRDAFVSNTYAKIEDLPSGAIVGTCSLRRQCQLKAARPDLVIKELRGNVGT
RLSKLDAGEYDAIILAAAGLKRLELESRIRSFIEPEQSLPAVGQGAVGIECRVNDQRV
RALLAPLNHADTADRVRCERAMNLTLQGGCQVPIGSYALLEGDTIWLRALVGEPDGSQ
IVRGEIRGPRTQAEQLGITLAEQLLSQGAKEILERLYCDHE"
misc_feature complement(114809..115684)
/gene="hemC"
/locus_tag="VC0120"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:178840"
misc_feature complement(114809..115681)
/gene="hemC"
/locus_tag="VC0120"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cd00494"
/db_xref="CDD:29604"
misc_feature complement(order(114878..114880,114884..114886,
114893..114895,114902..114904,114917..114919,
114953..114955,114959..114961,114971..114973,
114992..114994,115001..115006,115016..115018,
115025..115027,115046..115048,115100..115123,
115169..115174,115181..115183,115244..115246,
115283..115285,115295..115300,115304..115306,
115379..115396,115400..115405,115430..115432,
115436..115453,115643..115645,115658..115660))
/gene="hemC"
/locus_tag="VC0120"
/note="domain interfaces; other site"
/db_xref="CDD:29604"
misc_feature complement(order(114971..114973,115100..115105,
115112..115114,115169..115171,115178..115180,
115187..115195,115232..115234,115253..115255,
115301..115306,115310..115318,115445..115450,
115454..115456,115640..115642,115652..115654))
/gene="hemC"
/locus_tag="VC0120"
/note="active site"
/db_xref="CDD:29604"
gene complement(115891..116037)
/locus_tag="VC0121"
/db_xref="GeneID:2612961"
CDS complement(115891..116037)
/locus_tag="VC0121"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229780.1"
/db_xref="GI:15640153"
/db_xref="GeneID:2612961"
/translation="MTDKSRFLVMFYATMPTKRDQSNTSFRFGKALLEAHHTKLNTYQ
HKTA"
gene 116053..118584
/gene="cyaA"
/locus_tag="VC0122"
/db_xref="GeneID:2612962"
CDS 116053..118584
/gene="cyaA"
/locus_tag="VC0122"
/EC_number="4.6.1.1"
/note="catalyzes transfer of adenylyl group of ATP from
pyrophosphate to the 3'-hydroxyl group to form cyclic AMP"
/codon_start=1
/transl_table=11
/product="adenylate cyclase"
/protein_id="NP_229781.1"
/db_xref="GI:15640154"
/db_xref="GeneID:2612962"
/translation="MQAYTQTLIHRLDKLNRQRIERALALMDLQSQRVFHLIPALFQF
NHPLIPGYFSADTPFGIHLFEANPIQQQFIDDAQLTLGEPLTPADNPAILGLYTMGST
SSIGQSTSSDLDIWVCVSAQMSCEARDNLSSKCLLITDWAKSQGVEANFFIMNEERFR
HNHSEALSGENCGSSQHLLLLDEFYRSAVRLAGKRLLWQIVPPEMEECYDEYVHELCS
NGYLNCNEWIDFGKLNRIPAEEYFGANLWQLYKSIDSPYKSVLKAILLEAYSWEYPHT
QLLSIDSKRRFFADEPDLYGMDSYYQMLEKVTRYLVRIGDSTRLDLVRRCFYLKTHEK
LSREPGVGSMPWRREALRELTSEWQWSADLIAELDNRRHWKVEQVKVVHHALLDALML
SYRNLIQFARRNDITSAISPQDISILARKLYAAFEVLPGKVTLLNPQISPDLHEPDLS
FIEVCAGRTNKPGWYLYKQPLQAQRLIGQPYLEHNEYLSKLVAWAFFNGLITESTRLH
AVVREAQLDIDKFYQMVSDLRNTFSLRKRRPTMQALANPCEISQLAMFINFEHDPTSE
LSGKALKVDLKNIDIFSFGAEQKCLVGSVDLVYRNSWQEVRTLHFEGQTAMLDALKTV
LGKMHQDALPPESVDVFCYSKNLRGVMRNLVYQLLAECIDLRLKPMEQEKRRRFKALR
MGDQMYGLFFERRGVSVQKLENSVDFYRSISTNKLKGSPLLMLDRDQDYPLPAVVDSF
ASEGLVQFFFEDTEKGFNIYVLDEANRVEVYHQFNGEKDEMIASVNSFYTSMLDDSNK
LGAKSINFNLPQYYQIIHPEEGETYVVPYRNDSAVYSKPSQVVNA"
misc_feature 116053..118581
/gene="cyaA"
/locus_tag="VC0122"
/note="Adenylate cyclase [Nucleotide transport and
metabolism]; Region: CyaA; COG3072"
/db_xref="CDD:225614"
misc_feature 116053..116649
/gene="cyaA"
/locus_tag="VC0122"
/note="Adenylate cyclase NT domain; Region: Adenyl_cycl_N;
pfam12633"
/db_xref="CDD:221677"
misc_feature 116728..118548
/gene="cyaA"
/locus_tag="VC0122"
/note="Adenylate cyclase, class-I; Region: Adenylate_cycl;
pfam01295"
/db_xref="CDD:216418"
gene complement(118690..119004)
/gene="cyaY"
/locus_tag="VC0123"
/db_xref="GeneID:2612963"
CDS complement(118690..119004)
/gene="cyaY"
/locus_tag="VC0123"
/note="defects in the mitochondrial frataxin protein cause
Friedreich ataxis which is an autosomal recessive
neurodegenerative disease; based on phylogenomic
distribution this protein may have a role in iron-sulfur
cluster protein assembly"
/codon_start=1
/transl_table=11
/product="frataxin-like protein"
/protein_id="NP_229782.1"
/db_xref="GI:15640155"
/db_xref="GeneID:2612963"
/translation="MNETEFHQLVDSQLERIEAAIDEAGADIDYETSGNVMTLEFDDG
SQIIINRQEPMREIWLASKSGGYHFKSIDGEWICSKTGLELLTLLKQECDKHADEPID
WV"
misc_feature complement(118696..119004)
/gene="cyaY"
/locus_tag="VC0123"
/note="Frataxin is a nuclear-encoded mitochondrial protein
implicated in Friedreich's ataxia (FRDA), an human
autosomal recessive neurodegenerative disease; Frataxin is
found in eukaryotes and in purple bacteria; lack of
frataxin causes iron to accumulate...; Region: Frataxin;
cd00503"
/db_xref="CDD:238280"
misc_feature complement(order(118918..118920,118936..118941,
118948..118950,118960..118962,118969..118974,
118996..118998))
/gene="cyaY"
/locus_tag="VC0123"
/note="putative iron binding site [ion binding]; other
site"
/db_xref="CDD:238280"
gene 118981..119196
/locus_tag="VC0124"
/note="This region contains an authentic frame shift and
is not the result of a sequencing artifact."
/pseudogene="unknown"
/db_xref="GeneID:2615365"
gene 119229..120482
/locus_tag="VC0125"
/db_xref="GeneID:2615366"
CDS 119229..120482
/locus_tag="VC0125"
/note="similar to SP:P19572; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="diaminopimelate decarboxylase"
/protein_id="NP_229783.1"
/db_xref="GI:15640156"
/db_xref="GeneID:2615366"
/translation="MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHA
FDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVF
SGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTH
PYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRL
LALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEP
GRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEA
QTYDLVGPVCETSDFLGKDRDLVLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVD
GNKTYLVRQREELSSLWALESVLPE"
misc_feature 119238..120467
/locus_tag="VC0125"
/note="diaminopimelate decarboxylase; Region: lysA;
TIGR01048"
/db_xref="CDD:233248"
misc_feature 119304..120401
/locus_tag="VC0125"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Diaminopimelate Decarboxylase; Region:
PLPDE_III_DapDC; cd06828"
/db_xref="CDD:143501"
misc_feature order(119403..119405,119409..119411,119466..119468,
119535..119537,119676..119678,119820..119822,
119826..119828,119835..119837,119943..119948,
120051..120062,120168..120170,120180..120182,
120258..120260,120342..120344,120354..120356,
120366..120368)
/locus_tag="VC0125"
/note="active site"
/db_xref="CDD:143501"
misc_feature order(119403..119405,119409..119411,119466..119468,
119535..119537,119676..119678,119820..119822,
119826..119828,119835..119837,119943..119948,
120051..120062,120258..120260,120342..120344)
/locus_tag="VC0125"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143501"
misc_feature order(119409..119411,119826..119828,119835..119837,
120060..120062,120168..120170,120180..120182,
120258..120263,120342..120344,120354..120356,
120366..120368)
/locus_tag="VC0125"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143501"
misc_feature order(119409..119411,120258..120260)
/locus_tag="VC0125"
/note="catalytic residues [active]"
/db_xref="CDD:143501"
misc_feature order(119424..119429,119472..119477,119481..119486,
119541..119549,119559..119561,119604..119606,
119613..119615,119736..119747,120105..120107,
120111..120113,120132..120134,120138..120140,
120249..120266,120270..120272,120351..120359,
120363..120374,120381..120383)
/locus_tag="VC0125"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143501"
gene 120494..121324
/gene="dapF"
/locus_tag="VC0126"
/db_xref="GeneID:2614550"
CDS 120494..121324
/gene="dapF"
/locus_tag="VC0126"
/EC_number="5.1.1.7"
/note="involved in lysine biosynthesis; DAP epimerase;
produces DL-diaminopimelate from LL-diaminopimelate"
/codon_start=1
/transl_table=11
/product="diaminopimelate epimerase"
/protein_id="NP_229784.2"
/db_xref="GI:161582035"
/db_xref="GeneID:2614550"
/translation="MHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGF
DQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTK
KGKMVLNVEEEDLITVNMGVPEFEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNP
HVVTVVDDIRTAAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQA
CGSGACAAVAVGILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQISC
"
misc_feature 120494..121321
/gene="dapF"
/locus_tag="VC0126"
/note="diaminopimelate epimerase; Provisional; Region:
dapF; PRK00450"
/db_xref="CDD:234768"
misc_feature 120506..120868
/gene="dapF"
/locus_tag="VC0126"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:216645"
misc_feature 120953..121300
/gene="dapF"
/locus_tag="VC0126"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:216645"
gene 121338..122036
/locus_tag="VC0127"
/db_xref="GeneID:2614551"
CDS 121338..122036
/locus_tag="VC0127"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229785.1"
/db_xref="GI:15640158"
/db_xref="GeneID:2614551"
/translation="MSQVTADALTAQVVAEYLYEHPDFFQHHPHLVERLALPTQTGAV
SLAHVQLARQRQRIDSLEEEITALMSLAANNDRTFHEFMDLQEQILKCSSLQAVLHAI
EAKARELNLRAYVRLLQRHDEKYGLASEDWQRFATNHFNGKSAYLGRLRQADRQRLLG
DRPAPEMGSYVVLPLQRQAPLGILAFASEDGGHFQPSMDTLFLRHLALVLAHLIETLP
WQSHDEERRTHPAS"
misc_feature 121347..122000
/locus_tag="VC0127"
/note="Protein of unknown function, DUF484; Region:
DUF484; pfam04340"
/db_xref="CDD:202976"
gene 122005..122940
/gene="xerC"
/locus_tag="VC0128"
/db_xref="GeneID:2614552"
CDS 122005..122940
/gene="xerC"
/locus_tag="VC0128"
/note="site-specific tyrosine recombinase which cuts and
rejoins DNA molecules; binds cooperatively to specific DNA
consensus sites; forms a heterotetrameric complex with
XerC; XerCD exhibit similar sequences; essential to
convert chromosome dimers to monomers during cell division
and functions during plasmid segregation; cell division
protein FtsK may regulate the XerCD complex; enzyme from
Streptococcus group has unusual active site motifs"
/codon_start=1
/transl_table=11
/product="site-specific tyrosine recombinase XerC"
/protein_id="NP_229786.1"
/db_xref="GI:15640159"
/db_xref="GeneID:2614552"
/translation="MKNDERTPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLET
MTQYLVQVGLTHWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGEL
QANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAE
LVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFV
SKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGH
ENIATTQIYTHLDFQHLAQVYDQAHPRARKKNKDD"
misc_feature 122026..122925
/gene="xerC"
/locus_tag="VC0128"
/note="Site-specific recombinase XerC [DNA replication,
recombination, and repair]; Region: XerC; COG4973"
/db_xref="CDD:227307"
misc_feature 122053..122895
/gene="xerC"
/locus_tag="VC0128"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:241691"
misc_feature order(122473..122478,122545..122547,122746..122754,
122857..122859)
/gene="xerC"
/locus_tag="VC0128"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238231"
misc_feature order(122473..122475,122545..122547,122752..122754,
122761..122763,122830..122832,122857..122859)
/gene="xerC"
/locus_tag="VC0128"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:238231"
misc_feature order(122473..122475,122752..122754,122761..122763,
122830..122832,122857..122859)
/gene="xerC"
/locus_tag="VC0128"
/note="active site"
/db_xref="CDD:238231"
gene 122943..123662
/locus_tag="VC0129"
/db_xref="GeneID:2614884"
CDS 122943..123662
/locus_tag="VC0129"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229787.1"
/db_xref="GI:15640160"
/db_xref="GeneID:2614884"
/translation="MLFYRPLASIQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHP
ITATRPLAWWLAMKRDIARRFPEQCHDVSQWRYLQVQHGLLELGYAQPEAEQAASETL
EQVMRWRNQVDVPAETHRVLAQLAAKVPLIAITNGNVQIEKIGLSGYFQTVLRAGPDG
RAKPYPDLFAQAAQQLQLEPRSILHVGDHLQTDVLGARQNGFQACWFNDQGQSIRRLA
KASVLPDVEIERLSELLLIVN"
misc_feature 122943..123644
/locus_tag="VC0129"
/note="flavin mononucleotide phosphatase; Provisional;
Region: PRK10748"
/db_xref="CDD:182696"
misc_feature <123363..123560
/locus_tag="VC0129"
/note="REG-2-like, HAD superfamily (subfamily IA)
hydrolase; Region: DREG-2; TIGR02252"
/db_xref="CDD:200170"
gene 123772..126261
/locus_tag="VC0130"
/db_xref="GeneID:2614885"
CDS 123772..126261
/locus_tag="VC0130"
/note="similar to SP:P55552 PID:2182511; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="GGDEF family protein"
/protein_id="NP_229788.1"
/db_xref="GI:15640161"
/db_xref="GeneID:2614885"
/translation="MFTVSRLIPDLASANQVLETMDLPHGQSILVQIFSPLSREHVVQ
LARLIRSRHPQACLLGCSTEEVIFQGEVHHQVTLLQITVFEQTYLSRAVVDYSDDEAA
DAERLARQLELTSMSRAVVCFSWQMDTLQVARFALRDTQGAPVPVAGGAAKQTPSGRW
VLLDEACYQNASVAIALHGEALYVETGGYTEWQPVGRTYRVTAVEGDRVLRLDDEPIE
AIYQRNLGAQADLPHDWLISFPLMKGECRHQDLYLPLGLAEEGGLRFNRPLALQDEVR
FCFDHPSLTLERVYLTAQQLQAKQCQQVWVFNCALRLNFMHENHELQPLQAVAPTDGC
YCWGELLYEHGQQQVMHHSMTFLALREGAVRDDLVPIPLPSYPEGMTSPLFNLIRHAF
HDLDAMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLANFAANEHLIALKVT
NFNQINEKYGYPVGDKLLRDLSEQFQVFLDQKLAGQSGLYAIGVGEWATVFRAKLDGK
SIHSHFYQFVEQLEHVNFEPYGLPNVDYLSISLCAGLVSQGDFAEHSPDELLLRAIEA
RRYAFNNNHHFCNAARLKVQESVRQERLNWLSRVSRAVVRDDVVVYAQPICQARSHIV
ASYECLVRIEDEGEIILPGNFLPIITDTHLYTRLSRQMITHTFNMMRHRPEAFSINLS
PQDLMSERTLQHLEAAIKSVADPARVGLEVLESEQIKDYGRMIEVCNHFRTLGATIIV
DDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAE
FVHNQTVCRISEDMGVDYLQGYFLGRPSRLG"
misc_feature 123772..124839
/locus_tag="VC0130"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3287"
/db_xref="CDD:225825"
misc_feature 123859..124419
/locus_tag="VC0130"
/note="FIST N domain; Region: FIST; pfam08495"
/db_xref="CDD:219867"
misc_feature 124426..124791
/locus_tag="VC0130"
/note="FIST C domain; Region: FIST_C; pfam10442"
/db_xref="CDD:220757"
misc_feature 124960..125478
/locus_tag="VC0130"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:225109"
misc_feature 125023..125469
/locus_tag="VC0130"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(125113..125115,125254..125256)
/locus_tag="VC0130"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(125128..125130,125137..125142,125152..125154,
125164..125166,125248..125259)
/locus_tag="VC0130"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(125233..125235,125329..125331)
/locus_tag="VC0130"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 125605..126255
/locus_tag="VC0130"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
gene complement(126294..126890)
/locus_tag="VC0131"
/db_xref="GeneID:2615824"
CDS complement(126294..126890)
/locus_tag="VC0131"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229789.1"
/db_xref="GI:15640162"
/db_xref="GeneID:2615824"
/translation="MNAACPDCGLKFQCLCSAVPSFHAPFQLSLLTHDNEWQRETNTG
RWLVKSMAECQAYTWSRVAANTELQARLTQPNARSFLVYPSEESVELTDALRSLREDE
IAHFIVLDATWQEARKMERKSPWLADVPRVHLTTDHVSAYRLRRNQQPGNLCTLEVGL
MLLRHFNAEASAEALEQFYHYSMNAFKADKSGHRWIER"
misc_feature complement(126297..126890)
/locus_tag="VC0131"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3148"
/db_xref="CDD:225690"
gene complement(126887..128431)
/locus_tag="VC0132"
/db_xref="GeneID:2615825"
CDS complement(126887..128431)
/locus_tag="VC0132"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229790.1"
/db_xref="GI:15640163"
/db_xref="GeneID:2615825"
/translation="MRALPFCAMSLAMLLQACTNTTSVSVEPDSAPIIPATLDKPETI
QPQSFMLRGEVVVGHEVRRFTPCGSHQQYWLNLSPEQLNEAMALNRSPYQPLYGELVG
TLTPPSQTGFNGDYVARIEVQSINQLSNESRGCEQPLSPTRAFGNEPFWSMRFVDGGL
QFQPMGGDKQQFSITRSQLSQDKRRYQFDGGELLLEQGQCRDGMSDNLYQWRSKLTLK
GGQYQGCATLANLDPTLEWSGVYFASSTEQTGFSVSLTLEKDHTAQTRYEYANGEPAV
VEQGYWQQLNPNQIQVVMTRHQQQYLLSERIFTREGYQLTATQEKVGQSVYNIADGGL
VLFRSLVELNESAVPPAVGQAAIHAQQIAGRADYEEDVDQAIRRYFNLHQTSPDNTQY
RWLKYDLNGDEQPELLVQLDWCGTGGCTLLIFDQHNQQWRFNSRITLVQNPIRLGKQT
HHGWQDLLFSVSGGGAKPAIHRLQYNGISYPTNPSVAPEANAEQISQVVLFADGLSPR
QSGIKL"
misc_feature complement(127718..128161)
/locus_tag="VC0132"
/note="Predicted membrane protein [Function unknown];
Region: COG3650"
/db_xref="CDD:226176"
gene 128444..128632
/locus_tag="VC0133"
/db_xref="GeneID:2615826"
CDS 128444..128632
/locus_tag="VC0133"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229791.1"
/db_xref="GI:15640164"
/db_xref="GeneID:2615826"
/translation="MARDGIGDVWSQKLSHKLKDKLNRHRVQLTECKQRNVLFESGFA
ILRGEWLRNGAENSQRQR"
gene complement(128715..129542)
/locus_tag="VC0134"
/db_xref="GeneID:2615258"
CDS complement(128715..129542)
/locus_tag="VC0134"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229792.1"
/db_xref="GI:15640165"
/db_xref="GeneID:2615258"
/translation="MTTSAHKHPYKIVASDLDGTLLAPNHQLSEFSKQTLKQLHDKGF
TFIFATGRHHIDVAGIREIAGIPAYMITSNGARVHDQNDQLMYSKNVPQDLVQAIIDV
VKHDKQLFVHLYRNDEWMLNKEDEILRDFHEDSGFTYRVFDVNNAPTDGIAKIFFTQE
DQDHEHLVQYETLLNQRFGDKLNVAFSTPWCLEVMCAGVSKGDALQAVAESLHLGLEN
CIAFGDGMNDVEMLSMAGKGLVMGTAHEKVFNALPDNEVIGSNADDAVAHYLHQHLF"
misc_feature complement(128733..129515)
/locus_tag="VC0134"
/note="putative hydrolase; Provisional; Region: PRK10976"
/db_xref="CDD:182878"
misc_feature complement(<129273..129509)
/locus_tag="VC0134"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(order(129390..129395,129489..129497))
/locus_tag="VC0134"
/note="active site"
/db_xref="CDD:119389"
misc_feature complement(129480..129497)
/locus_tag="VC0134"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature complement(129393..129395)
/locus_tag="VC0134"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature complement(128835..>128963)
/locus_tag="VC0134"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
cl17202"
/db_xref="CDD:247756"
gene complement(129657..130673)
/locus_tag="VC0135"
/db_xref="GeneID:2615259"
CDS complement(129657..130673)
/locus_tag="VC0135"
/note="similar to PID:1449198; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="lysophospholipase L2"
/protein_id="NP_229793.1"
/db_xref="GI:15640166"
/db_xref="GeneID:2615259"
/translation="MNPEKNLYPYTQESSLEQALNFEIAQVWHTRSEGTYRSFDKTHI
YWCSLKHPEHQKAVVIVNGRIESAWKYQELCYDLFRQGFDVYTYDHRGQGRSERLTED
RQIGHVHEFQDYVTDLKALVEHFDLGHYQERFLLAHSMGGAIATRYIQTTPAHPFSAL
ALSAPMFGVNMPWYLRPWALLITQIMAAVTLKPSYAPGYGPYHAKPFHLNLLTHSETR
YQLFRELYEAHPELQIGGPSHRWVWQSLMATKQCLQLTRQIKIPMLILQAGEEAIVCN
RAQIRLFKKLSRTQKRAALCRIAGARHELLFEQDAYRNQTLDHILRFFADSTIDHKRQ
HHRP"
misc_feature complement(129696..130592)
/locus_tag="VC0135"
/note="lysophospholipase L2; Provisional; Region:
PRK10749"
/db_xref="CDD:182697"
misc_feature complement(130305..130553)
/locus_tag="VC0135"
/note="Putative lysophospholipase; Region: Hydrolase_4;
pfam12146"
/db_xref="CDD:221442"
gene 130748..131365
/gene="rhtB"
/locus_tag="VC0136"
/db_xref="GeneID:2615265"
CDS 130748..131365
/gene="rhtB"
/locus_tag="VC0136"
/codon_start=1
/transl_table=11
/product="homoserine/homoserine lactone efflux protein"
/protein_id="NP_229794.1"
/db_xref="GI:15640167"
/db_xref="GeneID:2615265"
/translation="MDIHVWLAYLLTAVVFSLAPGSGTVNSISNGLSYGTRHSLGAII
GLQIGLACHIVLVGIGIGALVAQSALAFTLIKWIGAAYLVWLGIQKWRDRAPLTATTT
SHELSQAALLRKAVLINLTNPKSIVFLVALFPQFIDPTRDHWPQFLVLGITTVTIDAI
VMFGYTALAAQLGRYIRSPNIMTRMNKLFGSMFMGCGMLLATAKA"
misc_feature 130748..131362
/gene="rhtB"
/locus_tag="VC0136"
/note="homoserine/homoserine lactone efflux protein;
Provisional; Region: rhtB; PRK10520"
/db_xref="CDD:182514"
gene 131385..132611
/locus_tag="VC0137"
/db_xref="GeneID:2615266"
CDS 131385..132611
/locus_tag="VC0137"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229795.2"
/db_xref="GI:471237027"
/db_xref="GeneID:2615266"
/translation="MYTTYVARQPILNAKRHTLGYELLFRDGEKNAFPEYMDADRATY
RLIVENFLSLGTNPRIARSRCFINFPHKSLIRRLPLTLPREQIVVEILETCQPTDDLF
EAVQELSQRGYLLALDDFVYSPAWERFLPYVQIVKIDIMAMGLDKACEFVRGRLAQGS
RRRFLAERVETEDEFHQARHAGFTFFQGYFFSKPEIIKQRYVSPEHVIAMQLFREVCQ
PEVDYVRVERLVAQDIALSYKLLRFVNTMSDRISVSISSFRQALVYLGQDKLRIFVSL
AVASYISSKKPKELYNLSLQRAQFCQLMATHTHFKAHREQAFLIGMFSVLDALLDTSI
EQLVEQLPLADDVKLALREREGPLGTLLDLEECFEKADWQGVEQHCLELGFDLEDVRQ
ELIEAQRWSQDINRLI"
misc_feature 131388..132608
/locus_tag="VC0137"
/note="Predicted signal transduction protein containing
EAL and modified HD-GYP domains [Signal transduction
mechanisms]; Region: COG3434"
/db_xref="CDD:225968"
misc_feature 131409..131966
/locus_tag="VC0137"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
gene complement(132791..133261)
/locus_tag="VC0139"
/db_xref="GeneID:2615772"
CDS complement(132791..133261)
/locus_tag="VC0139"
/note="similar to GB:L42023 SP:P45173 PID:1007363
PID:1221482 PID:1205585; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="DPS family protein"
/protein_id="NP_229797.1"
/db_xref="GI:15640170"
/db_xref="GeneID:2615772"
/translation="MATNLIGLDTTQSQKLANALNNLLANYQVFYMNTRGYHWNIQGK
EFFELHAKFEEIYTDLQLKIDELAERILTLSARPMHSFSGYLKAAQIKEHTDSIDGRS
SMQGLVDGFSILLHQQRDILELAGETGDEGTSALMSDYIREQEKLVWMLNAWLK"
misc_feature complement(132794..133261)
/locus_tag="VC0139"
/note="DNA-binding ferritin-like protein (oxidative damage
protectant) [Inorganic ion transport and metabolism];
Region: Dps; COG0783"
/db_xref="CDD:223854"
misc_feature complement(132797..133183)
/locus_tag="VC0139"
/note="DPS protein, ferritin-like diiron-binding domain;
Region: DPS; cd01043"
/db_xref="CDD:153102"
misc_feature complement(order(133055..133060,133067..133069,
133079..133081,133112..133114,133145..133150,
133154..133156,133166..133171))
/locus_tag="VC0139"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153102"
misc_feature complement(order(133055..133057,133067..133069,
133100..133102,133112..133114,133148..133150))
/locus_tag="VC0139"
/note="DPS ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153102"
misc_feature complement(order(132845..132850,132869..132871))
/locus_tag="VC0139"
/note="ion pore; other site"
/db_xref="CDD:153102"
gene complement(133431..133760)
/locus_tag="VC0140"
/db_xref="GeneID:2615773"
CDS complement(133431..133760)
/locus_tag="VC0140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229798.1"
/db_xref="GI:15640171"
/db_xref="GeneID:2615773"
/translation="MPFTLLISLALLIIAAVWFFSHFYRRHMQGENAPQRSAEVTILD
KQAIDIPHPLPGQDDQEFWIYVQKGRLGPKREFQVGIHYYHALNPGDKGVLTYQGQRF
LHFALKR"
misc_feature complement(133440..133712)
/locus_tag="VC0140"
/note="Protein of unknown function (DUF2500); Region:
DUF2500; pfam10694"
/db_xref="CDD:151190"
gene 133965..134333
/locus_tag="VC0142"
/db_xref="GeneID:2615263"
CDS 133965..134333
/locus_tag="VC0142"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229800.1"
/db_xref="GI:15640173"
/db_xref="GeneID:2615263"
/translation="MSEIEQVVLRTRKLETLLREQYHAEGKGLHQLITSCEERLPHDV
IKKLRYVATIRNKVVHEDDYRLDDRKAFLAVCQECEDELTPRSGKFVWRIAFMLMMLM
TLGALFFYYWHWEELSQHFQ"
gene complement(134395..134475)
/locus_tag="VC0142a"
/db_xref="GeneID:14857968"
CDS complement(134395..134475)
/locus_tag="VC0142a"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_007648021.1"
/db_xref="GI:471237028"
/db_xref="GeneID:14857968"
/translation="MISSSQKQGLVMIAVIIGLMTLPMMY"
gene 134836..135093
/locus_tag="VC0143"
/db_xref="GeneID:2615264"
CDS 134836..135093
/locus_tag="VC0143"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229801.1"
/db_xref="GI:15640174"
/db_xref="GeneID:2615264"
/translation="MFLSFICFYIFKNGSYFSFICLVGCFQFFDFFVVVFIGFLFLFC
SFGLVDFSFFYFVLIVFHLFGVDLLSWFGWWQVFLFCNFIE"
gene 135210..135839
/locus_tag="VC0144"
/db_xref="GeneID:2614866"
CDS 135210..135839
/locus_tag="VC0144"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229802.1"
/db_xref="GI:15640175"
/db_xref="GeneID:2614866"
/translation="MSMLSWISVVLSGFISISAYENQKLKQAIFFRIFSLLLLTIIVW
EQHSHATPEVIFISLGLAVSMFAHGLRLNHRYHKASFVLFLVAQLLFSKAFWVQLSGS
MVWWLPALLVAASIVAFFLLLPQIDTLIFPVTIMGLMLVQMTWAAGELWLQEATVASG
AGFLGCLVYILSATLLAIHDYRRPLPWGHTLISSSYLIAQALISASIVF"
misc_feature 135210..135836
/locus_tag="VC0144"
/note="Predicted membrane protein [Function unknown];
Region: COG3714"
/db_xref="CDD:226237"
gene complement(135888..136154)
/locus_tag="VC0145"
/db_xref="GeneID:2614867"
CDS complement(135888..136154)
/locus_tag="VC0145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229803.1"
/db_xref="GI:15640176"
/db_xref="GeneID:2614867"
/translation="MKALLWLAKAAIGFVWLVLLFNIVMPFPGNAAIALYIMTAFLLF
MHGLQMLIFIGAFGDKVPLKRWEKWSILIFGIFALLDIRRKYMM"
misc_feature complement(135891..136154)
/locus_tag="VC0145"
/note="Predicted membrane protein [Function unknown];
Region: COG3776"
/db_xref="CDD:226299"
gene complement(136151..136750)
/locus_tag="VC0146"
/db_xref="GeneID:2614854"
CDS complement(136151..136750)
/locus_tag="VC0146"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229804.1"
/db_xref="GI:15640177"
/db_xref="GeneID:2614854"
/translation="MQRRRQPNPSQKKAPTGQVRIISGLWRGRKLPVHDAEGLRPTTD
RVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNV
QSLKAENIELIHTDALAFLRQSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAM
IYIECEKELPLTELPPHWHLHREKSAGQVCYRLFIREEQ"
misc_feature complement(136157..136699)
/locus_tag="VC0146"
/note="N6-adenine-specific methylase [DNA replication,
recombination, and repair]; Region: COG0742"
/db_xref="CDD:223813"
misc_feature complement(<136340..136567)
/locus_tag="VC0146"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(136349..136351,136400..136408,
136481..136486,136535..136555))
/locus_tag="VC0146"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 136954..138129
/locus_tag="VC0147"
/db_xref="GeneID:2614855"
CDS 136954..138129
/locus_tag="VC0147"
/note="similar to SP:P10121 GB:U00039 GB:X04398 PID:41498
PID:466600; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="cell division protein FtsY"
/protein_id="NP_229805.1"
/db_xref="GI:15640178"
/db_xref="GeneID:2614855"
/translation="MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVA
IQTETALTETETETETETETETETETATVEPARIVEQEKPTESFFARLKRSLSRTKAN
IGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEAL
YGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKV
MLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIAD
TAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPI
TGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE"
misc_feature 137194..138126
/locus_tag="VC0147"
/note="signal recognition particle-docking protein FtsY;
Provisional; Region: PRK10416"
/db_xref="CDD:236686"
misc_feature <137344..137469
/locus_tag="VC0147"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; smart00963"
/db_xref="CDD:214941"
misc_feature 137515..138051
/locus_tag="VC0147"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:239389"
misc_feature 137533..137556
/locus_tag="VC0147"
/note="P loop; other site"
/db_xref="CDD:239389"
misc_feature order(137623..137625,137788..137790,137971..137973,
137980..137985)
/locus_tag="VC0147"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:239389"
gene 138151..138852
/locus_tag="VC0148"
/db_xref="GeneID:2614856"
CDS 138151..138852
/locus_tag="VC0148"
/note="similar to SP:P10115 GB:U00039 GB:X04398 PID:41499
PID:466599; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="cell division ATP-binding protein FtsE"
/protein_id="NP_229806.1"
/db_xref="GI:15640179"
/db_xref="GeneID:2614856"
/translation="MPALSGGDGVIRFQQVSKAYRGGRQALQKVDFHLRRGEMAFLGG
HSGAGKSTLLKLICAIERPTDGKISFNGHDITRIPNKDIPFLRRNIGIVFQDHRLLMD
RSIYDNVALPMRIESISENEIKRRVSAALDKTGLLDKARCLPSQLSGGEQQRVGIARA
VVNRPTLLLADEPTGNLDPELSSRVLRLFEEFNRAGVTILLATHDIHLVNSRPQYRHL
ELNQGFLSEVADYGR"
misc_feature 138178..138825
/locus_tag="VC0148"
/note="cell division protein FtsE; Provisional; Region:
PRK10908"
/db_xref="CDD:182829"
misc_feature 138181..138825
/locus_tag="VC0148"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 138280..138303
/locus_tag="VC0148"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(138289..138294,138298..138306,138433..138435,
138661..138666,138760..138762)
/locus_tag="VC0148"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 138424..138435
/locus_tag="VC0148"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 138589..138618
/locus_tag="VC0148"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 138649..138666
/locus_tag="VC0148"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 138673..138684
/locus_tag="VC0148"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 138748..138768
/locus_tag="VC0148"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 138842..139834
/locus_tag="VC0149"
/db_xref="GeneID:2614864"
CDS 138842..139834
/locus_tag="VC0149"
/note="similar to SP:P10122 GB:U00039 GB:X04398 PID:41500
PID:466598; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="cell division protein FtsX"
/protein_id="NP_229807.1"
/db_xref="GI:15640180"
/db_xref="GeneID:2614864"
/translation="MAVKPGNQKISKTTKSTKSKPRDVKRAKTDSFLAIHFKQAKASF
AALWRRPLGNILTLAVISMALALPASLYLLSKNIASVAERVAEPSQLSVYLHIDTPEP
RIIVLKDDLERRDEIAKVKYISPQQGLDDLSQYAGFEQAISLLDNATLPAVLVVTPKV
DSREQIQTLAKALQAEEGVTDVRMDEDWFARLDAIRHLATIVVISLSSLMLMSVFLIV
GNTLRFNVQANKEEIQTMKLIGATDAYILRPYLYSGMWFGLLGAVAAWLLTALMTILL
NGAVEALAQLYDSRFRLIGLGWDESLLLLMLGVFLGCVAAKVSAKRHLKEIEPV"
misc_feature 138932..139831
/locus_tag="VC0149"
/note="Cell division protein [Cell division and chromosome
partitioning]; Region: FtsX; COG2177"
/db_xref="CDD:225088"
misc_feature 138962..139828
/locus_tag="VC0149"
/note="cell division ABC transporter subunit FtsX;
Provisional; Region: ftsX; PRK11026"
/db_xref="CDD:182910"
gene 140004..140864
/locus_tag="VC0150"
/db_xref="GeneID:2614865"
CDS 140004..140864
/locus_tag="VC0150"
/note="binds with the catalytic core of RNA polymerase to
produce the holoenzyme; this sigma factor is responsible
for the expression of heat shock promoters"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-32"
/protein_id="NP_229808.1"
/db_xref="GI:15640181"
/db_xref="GeneID:2614865"
/translation="MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYK
GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLV
SFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARE
LGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENW
EAHTTQRLSMALASLDERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAM
RKLKEAVGEF"
misc_feature 140004..140861
/locus_tag="VC0150"
/note="RNA polymerase factor sigma-32; Reviewed; Region:
PRK06596"
/db_xref="CDD:235838"
misc_feature 140040..>140123
/locus_tag="VC0150"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature 140160..140372
/locus_tag="VC0150"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature 140673..140843
/locus_tag="VC0150"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(140703..140705,140733..140735,140760..140765,
140793..140795,140799..140804,140808..140816,
140820..140825,140829..140831)
/locus_tag="VC0150"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(141066..142466)
/locus_tag="VC0151"
/db_xref="GeneID:2614850"
CDS complement(141066..142466)
/locus_tag="VC0151"
/EC_number="1.6.1.1"
/note="catalyzes the conversion of NADPH to NADH"
/codon_start=1
/transl_table=11
/product="soluble pyridine nucleotide transhydrogenase"
/protein_id="NP_229809.1"
/db_xref="GI:15640182"
/db_xref="GeneID:2614850"
/translation="MGQKNHFDVIVIGSGPGGEGAAMGLTKGGKNVAIIEKESSVGGG
CTHWGTIPSKALRHAVSRIIEFNSNPLFCKNNSSIHATFSTILSHAKSVIDKQTRLRQ
GFYDRNQCTLIFGAAHFIDAHTVAVKKADGSIDTYSADKFVIATGSRPYHPKDVDFGH
PRIYDSDSILNLEHDPRHIIIYGAGVIGCEYASIFRGLDVKTDLINTRDRLLSFLDNE
VSDALSYHFWNSGVVIRNDETYDKVEGTSDGVIVHLKSGKKMRADCLLYANGRTGNTD
KLNLESVGLQADSRGQLVVNANYQTQVEHIYAVGDVIGYPSLASAAYDQGRFVAQAII
HGQAAHLLTEDIPTGIYTIPEISSVGRTEQELTAAKVPYEVGRASFKHLARAQIAGKD
IGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGEANTIEYFVNTTFNYPTM
AEAFRVAALNGLNRLF"
misc_feature complement(141069..142460)
/locus_tag="VC0151"
/note="soluble pyridine nucleotide transhydrogenase;
Provisional; Region: PRK05249"
/db_xref="CDD:235373"
misc_feature complement(141690..141935)
/locus_tag="VC0151"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
misc_feature complement(141093..141431)
/locus_tag="VC0151"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:217252"
gene 142774..143415
/locus_tag="VC0152"
/db_xref="GeneID:2614851"
CDS 142774..143415
/locus_tag="VC0152"
/note="'negatively controls the expression of fabA and
fabB, genes involved in the unsaturated fatty acid
biosynthesis'"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional repressor FabR"
/protein_id="NP_229810.1"
/db_xref="GI:15640183"
/db_xref="GeneID:2614851"
/translation="MKSLGIRAQQKEKTRRSLIDAAFSQLSADRSFSNLSLREVAREA
GIAPTSFYRHFKDMDELGLTMVDEGGLLLRQLMRQARQRIVKEGSVIRTSVETFMEFI
ESSPNVFRLLLRERSGTSCEFRAAVVREIQHFAAELTEYLVATGMTREEAMTQAEASV
TLVFSSGAEALDLDRRERDELAERLIMQLRMLAKGAHWYRKERERHRLKGALE"
misc_feature 142780..143385
/locus_tag="VC0152"
/note="DNA-binding transcriptional repressor FabR;
Provisional; Region: PRK11202"
/db_xref="CDD:183037"
misc_feature 142825..142956
/locus_tag="VC0152"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 143455..143826
/locus_tag="VC0153"
/db_xref="GeneID:2614852"
CDS 143455..143826
/locus_tag="VC0153"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229811.1"
/db_xref="GI:15640184"
/db_xref="GeneID:2614852"
/translation="MSRENNVQSTRAERKTLILALVAGMCSDALLSWLTMSSVPFSLF
ALIALVLSAQMLYQEYLAHPVAEEVPLVGLACFFVGAFGHSAFIKAQYPQEGSNFFSI
VIVLLLIFWIGRKLGYIGKPR"
misc_feature 143476..143823
/locus_tag="VC0153"
/note="Protein of unknown function (DUF1422); Region:
DUF1422; pfam07226"
/db_xref="CDD:148685"
gene complement(143863..144972)
/locus_tag="VC0154"
/db_xref="GeneID:2612955"
CDS complement(143863..144972)
/locus_tag="VC0154"
/EC_number="2.1.1.35"
/note="catalyzes the formation of 5-methyl-uridine at
position 54 in all tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA (uracil-5-)-methyltransferase"
/protein_id="NP_229812.1"
/db_xref="GI:15640185"
/db_xref="GeneID:2612955"
/translation="MATLDVNPELYQAQLADKIARLKAMFVDYSMPELEVFESPVANY
RMRAEFRIWHEGDDMYYIMFNQETREKYRVDQFPAASRLINDLMPLLMDAMKGSPILR
HKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMK
VVLDRDYVVENLQVNGQPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQESKGDLLELY
CGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEG
KREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYISCNPETLQEN
LQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK"
misc_feature complement(143869..144972)
/locus_tag="VC0154"
/note="tRNA (uracil-5-)-methyltransferase; Validated;
Region: PRK05031"
/db_xref="CDD:235332"
misc_feature complement(<144163..144336)
/locus_tag="VC0154"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(144172..144180,144253..144258,
144304..144324))
/locus_tag="VC0154"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 145370..147205
/locus_tag="VC0156"
/db_xref="GeneID:2612956"
CDS 145370..147205
/locus_tag="VC0156"
/note="similar to SP:P06129 GB:L14556 GB:M10112 PID:145440
PID:290427; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="vitamin B12 receptor"
/protein_id="NP_229813.1"
/db_xref="GI:15640186"
/db_xref="GeneID:2612956"
/translation="MQKSALAIALASLLTPISYLHANEAQPQETVVVTANRFEQKASS
TLADVEIITRQDIEQTQAKTLPELLRRLTGVQITQNGGRGQLASLFVRGTSSDQVLVL
VDGIRFARAAKGAVDFNQIPLTYVDRIEYVRGARASLYGSEAIGGVINIITKARSQQQ
GTTVSAGLGSLDYQELSIASGVAIGEKGQMNVALGTESDKGYNVRPVPGVNDGDRHGF
RSDNALLGYVHQFDESWSLFANARAYENIYQYDNSYGTRDYKEAEKDDLSFTIGTQYQ
SERWVSELQLTTQKQKSWDYTQSKGKYSDTSDNLEQRNIQWINRYLVNDVWTFAGGVD
WRDESYIDKTADKEFDRSNTAAFAVVAAEWQQWLLEASLRFDDNQEYGSQTTHNIALG
YQFIPEFGVKASYGSAFKAPNLYQQYDPSYGNVNLQPEDADSAELSFYGLFSGIKWSI
TGYDYKINNLIDYNSTTKNYQNVIGESNIKGVEFTAEFATGIVQHQLSVDLKDADDSK
GKTLQRRAEHMYKWNALVAFEQVDWSIGYQYVGKRPDLDYNTYPTQNITLDAYSLVDT
SVSYYVTDSTTISARIDNLLDKEYETANGYPAAERAYYLNIGYQF"
misc_feature 145370..147202
/locus_tag="VC0156"
/note="TonB-dependent vitamin B12 receptor; Region:
TonB-B12; TIGR01779"
/db_xref="CDD:233572"
misc_feature 145514..147202
/locus_tag="VC0156"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:238657"
misc_feature order(145514..145540,145568..145597,145634..145651,
145670..145693,145736..145768,145802..145828)
/locus_tag="VC0156"
/note="N-terminal plug; other site"
/db_xref="CDD:238657"
misc_feature 146264..146266
/locus_tag="VC0156"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:238657"
gene complement(147278..148885)
/locus_tag="VC0157"
/db_xref="GeneID:2614886"
CDS complement(147278..148885)
/locus_tag="VC0157"
/note="similar to GB:M25499 SP:P16588 PID:155251;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="alkaline serine protease"
/protein_id="NP_229814.1"
/db_xref="GI:15640187"
/db_xref="GeneID:2614886"
/translation="MFKKFLSLCIVSTFSVAATSALAQPNQLVGKSSPQQLAPLMKAA
SGKGIKNQYIVVLKQPTTIMSNDLQAFQQFTQRSVNALANKHALEIKNVFDSALSGFS
AELTAEQLQALRADPNVDYIEQNQIITVNPIISASANAAQDNVTWGIDRIDQRDLPLN
RSYNYNYDGSGVTAYVIDTGIAFNHPEFGGRAKSGYDFIDNDNDASDCQGHGTHVAGT
IGGAQYGVAKNVNLVGVRVLGCDGSGSTEAIARGIDWVAQNASGPSVANLSLGGGISQ
AMDQAVARLVQRGVTAVIAAGNDNKDACQVSPAREPSGITVGSTTNNDGRSNFSNWGN
CVQIFAPGSDVTSASHKGGTTTMSGTSMASPHVAGVAALYLQENKNLSPNQIKTLLSD
RSTKGKVSDTQGTPNKLLYSLTDNNTTPNPEPNPQPEPQPQPDSQLTNGKVVTGISGK
QGELKKFYIDVPAGRRLSIETNGGTGNLDLYVRLGIEPEPFAWDCASYRNGNNEVCTF
PNTREGRHFITLYGTTEFNNVSLVARY"
misc_feature complement(148499..148732)
/locus_tag="VC0157"
/note="Peptidase inhibitor I9; Region: Inhibitor_I9;
pfam05922"
/db_xref="CDD:203351"
misc_feature complement(147647..148615)
/locus_tag="VC0157"
/note="Subtilisin-like serine proteases [Posttranslational
modification, protein turnover, chaperones]; Region: AprE;
COG1404"
/db_xref="CDD:224322"
misc_feature complement(147698..148447)
/locus_tag="VC0157"
/note="Peptidase S8 family domain in ProteinaseK-like
proteins; Region: Peptidases_S8_PCSK9_ProteinaseK_like;
cd04077"
/db_xref="CDD:173790"
misc_feature complement(order(148424..148429,148436..148438))
/locus_tag="VC0157"
/note="calcium binding site 2 [ion binding]; other site"
/db_xref="CDD:173790"
misc_feature complement(order(147803..147805,147812..147814,
147992..147994,148073..148078,148253..148255,
148352..148354))
/locus_tag="VC0157"
/note="active site"
/db_xref="CDD:173790"
misc_feature complement(order(147803..147805,148253..148255,
148352..148354))
/locus_tag="VC0157"
/note="catalytic triad [active]"
/db_xref="CDD:173790"
misc_feature complement(order(147875..147877,147944..147946,
147950..147952))
/locus_tag="VC0157"
/note="calcium binding site 1 [ion binding]; other site"
/db_xref="CDD:173790"
misc_feature complement(147320..147517)
/locus_tag="VC0157"
/note="Bacterial pre-peptidase C-terminal domain; Region:
PPC; pfam04151"
/db_xref="CDD:217929"
gene 149278..150075
/locus_tag="VC0158"
/db_xref="GeneID:2614887"
CDS 149278..150075
/locus_tag="VC0158"
/EC_number="5.1.1.3"
/note="'converts L-glutamate to D-glutamate, a component
of peptidoglycan'"
/codon_start=1
/transl_table=11
/product="glutamate racemase"
/protein_id="NP_229815.1"
/db_xref="GI:15640188"
/db_xref="GeneID:2614887"
/translation="MSSPSFPRVLIFDSGVGGLSVYREIEARLPQLNYIYLFDNAAYP
YGELTQETLIARVDTLVTRMVEQERIDLVVIACNTASTIVLPVLRAKLTIPVVGVVPA
IKPASLIASKAIGLIATPATVKRQYTQELIRDFSANKNVELLGSTRLVNMAEEKLRGK
PLDLEELASILQPLKNTIDVAVLGCTHFPLIKEEIQQVLGEQVQLIDSGLAIARRVQE
LLGIEQAVGAKQKHRIYASAPPWEESALNIKLEQLGFNPVQPFLHPI"
misc_feature 149281..149997
/locus_tag="VC0158"
/note="glutamate racemase; Provisional; Region: PRK00865"
/db_xref="CDD:234851"
gene complement(150041..150499)
/locus_tag="VC0159"
/db_xref="GeneID:2614888"
CDS complement(150041..150499)
/locus_tag="VC0159"
/note="similar to GB:AE000511 PID:2313961; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="RNA-binding protein"
/protein_id="NP_229816.1"
/db_xref="GI:15640189"
/db_xref="GeneID:2614888"
/translation="MKSDKSMLWIALLAVIGAGILSQLTLHSSFAFLIGVVATALICK
LSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTG
KRRGFGFVVIAASQAQTAIDALNEKEYMQRTLKVRIANDPKSDEEMAEQD"
misc_feature complement(<150071..>150313)
/locus_tag="VC0159"
/note="RNA-binding proteins (RRM domain) [General function
prediction only]; Region: COG0724"
/db_xref="CDD:223796"
misc_feature complement(150080..150307)
/locus_tag="VC0159"
/note="RNA recognition motif in Helicobacter pylori HP0827
protein and similar proteins; Region: RRM_HP0827_like;
cd12399"
/db_xref="CDD:240845"
gene 151059..152593
/gene="16Sb"
/locus_tag="VCr004"
/db_xref="GeneID:2614873"
rRNA 151059..152593
/gene="16Sb"
/locus_tag="VCr004"
/product="16S ribosomal RNA"
/db_xref="GeneID:2614873"
gene 152663..152738
/gene="tRNA-Glu-1"
/locus_tag="VCt004"
/db_xref="GeneID:2614862"
tRNA 152663..152738
/gene="tRNA-Glu-1"
/locus_tag="VCt004"
/product="tRNA-Glu"
/db_xref="GeneID:2614862"
gene 153026..155912
/gene="23Sb"
/locus_tag="VCr005"
/db_xref="GeneID:2614863"
rRNA 153026..155912
/gene="23Sb"
/locus_tag="VCr005"
/product="23S ribosomal RNA"
/db_xref="GeneID:2614863"
gene 156041..156158
/gene="5Sb"
/locus_tag="VCr006"
/db_xref="GeneID:2614853"
rRNA 156041..156158
/gene="5Sb"
/locus_tag="VCr006"
/product="5S ribosomal RNA"
/db_xref="GeneID:2614853"
gene 156206..156296
/gene="tRNA-Ser-1"
/locus_tag="VCt005"
/db_xref="GeneID:2612957"
tRNA 156206..156296
/gene="tRNA-Ser-1"
/locus_tag="VCt005"
/product="tRNA-Ser"
/db_xref="GeneID:2612957"
gene complement(156407..157303)
/locus_tag="VC0161"
/db_xref="GeneID:2614428"
CDS complement(156407..157303)
/locus_tag="VC0161"
/note="participates in controlling several genes involved
in isoleucine and valine biosynthesis; activates the
transcription of the ilvC gene in the presence of
acetolactate or acetohydroxybutyrate"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator IlvY"
/protein_id="NP_229818.1"
/db_xref="GI:15640191"
/db_xref="GeneID:2614428"
/translation="MNIKTLQLFMHLCDCKNFSKTASAMHLSPSALSRQIQKLEQDLG
HTLFLRDNRSVELTPAAHQLLPVAARIIHDWRQFTTELNDDSQELRGEIKLFCSVTAS
YSHLPELLSSFRLKHPYIEFKLLTGDPAQAIDKILHDEADIAISAMPEQLPSRIEFAT
ISEIPLSVIAPLGISSFMDELQKEQPDWNEIPFIVPESGTARDRANTWFKQMKIKPNI
YAQIAGHEAIVSLVALGCGVGIAPDVVINNSPVRDKIQRLSVTPIKPFMLGVCCKRSQ
LDNPLVQALWRVVSAKKSVVDK"
misc_feature complement(157118..157297)
/locus_tag="VC0161"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(156428..157231)
/locus_tag="VC0161"
/note="DNA-binding transcriptional regulator IlvY;
Provisional; Region: PRK11716"
/db_xref="CDD:236961"
misc_feature complement(156440..157030)
/locus_tag="VC0161"
/note="The C-terminal substrate binding of LysR-type
transcriptional regulator IlvY, which activates the
expression of ilvC gene that encoding acetohydroxy acid
isomeroreductase for the biosynthesis of branched amino
acids; contains the type 2 periplasmic bindin; Region:
PBP2_IlvY; cd08430"
/db_xref="CDD:176121"
misc_feature complement(order(156602..156607,156611..156616,
156632..156649,156926..156946,156950..156952,
156962..156964,156971..156976,156980..156985))
/locus_tag="VC0161"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176121"
gene 157441..158925
/locus_tag="VC0162"
/db_xref="GeneID:2614429"
CDS 157441..158925
/locus_tag="VC0162"
/EC_number="1.1.1.86"
/note="'catalyzes the formation of
(R)-2,3-dihydroxy-3-methylbutanoate from
(S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and
isoleucine biosynthesis'"
/codon_start=1
/transl_table=11
/product="ketol-acid reductoisomerase"
/protein_id="NP_229819.1"
/db_xref="GI:15640192"
/db_xref="GeneID:2614429"
/translation="MANYFNTLNLREQLDQLGRCRFMAREEFATEADYLKGKKVVIVG
CGAQGLNQGLNMRDSGLDVSYALRQAAIDEQRQSFKNAKNNGFNVGSYEQLIPTADLV
INLTPDKQHTSVVNAVMPLMKQGAALGYSHGFNIVEEGMQIRKDITVVMVAPKCPGTE
VREEYKRGFGVPTLIAVHPENDPQGEGWEIAKAWAAATGGHRAGCLASSFVAEVKSDL
MGEQTILCGMLQAGSIVCYEKMVADGIDPGYAGKLLQFGWETITEALKFGGITHMMDR
LSNPAKIKAFELSEELKDLMRPLYNKHMDDIISGHFSSTMMADWANDDKDLFGWRAET
AETAFENYPTTDVKIAEQEYFDNGILMIAMVRAGVELAFEAMTASGIIDESAYYESLH
ELPLIANTVARKRLYEMNVVISDTAEYGNYLFANVAVPLLREKFMPKVGTDVIGKGLG
VVSNQVDNATLIEVNSIIRNHPVEYIGEELRGYMKDMKRIAVGD"
misc_feature 157444..158913
/locus_tag="VC0162"
/note="ketol-acid reductoisomerase; Validated; Region:
PRK05225"
/db_xref="CDD:235368"
misc_feature 157540..158052
/locus_tag="VC0162"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvN; pfam07991"
/db_xref="CDD:116601"
misc_feature 158068..158460
/locus_tag="VC0162"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvC; pfam01450"
/db_xref="CDD:216510"
misc_feature 158512..158904
/locus_tag="VC0162"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvC; pfam01450"
/db_xref="CDD:216510"
gene complement(159052..159303)
/locus_tag="VC0163"
/db_xref="GeneID:2614430"
CDS complement(159052..159303)
/locus_tag="VC0163"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229820.1"
/db_xref="GI:15640193"
/db_xref="GeneID:2614430"
/translation="MFDAKKLEQIAKQIHEAMPQPVKELGADVEQKVRQVIQGQLNKL
DVVSREEFDVQTQVLLRTRQKLTELEQKMAELEAKLADK"
misc_feature complement(159055..159303)
/locus_tag="VC0163"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2960"
/db_xref="CDD:225508"
gene complement(159419..162529)
/locus_tag="VC0164"
/db_xref="GeneID:2612953"
CDS complement(159419..162529)
/locus_tag="VC0164"
/note="similar to GB:L42023 PID:1005991 PID:1220999
PID:1205142 SP:Q57124; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein"
/protein_id="NP_229821.1"
/db_xref="GI:15640194"
/db_xref="GeneID:2612953"
/translation="MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTV
ITVSTGYYGASADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPN
AALSDVLAKTNSVRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERV
VNPQLYAVNGVSSIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQ
AIGEFVLYNGSADTQVSTVEDLESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANG
REAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVI
KTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV
LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIAL
MGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDR
MTARYERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPS
NANLDYLANTMDDVNKILSDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQATV
TNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVK
ANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNG
RSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNS
ATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLAL
AIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLIT
KHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGA
AQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHKPLPVFVEDKDLEKLARIDEAK
AAHRQL"
misc_feature complement(159500..162529)
/locus_tag="VC0164"
/note="multidrug efflux protein; Reviewed; Region:
PRK09579"
/db_xref="CDD:169983"
gene complement(162541..163647)
/locus_tag="VC0165"
/db_xref="GeneID:2612954"
CDS complement(162541..163647)
/locus_tag="VC0165"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229822.1"
/db_xref="GI:15640195"
/db_xref="GeneID:2612954"
/translation="MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPV
TVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS
AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKAT
IARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQ
EVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILP
KLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEXVKPG
DVVVTTGQVRLSNGAKVRIVESDATTPPAETPML"
misc_feature complement(162586..163518)
/locus_tag="VC0165"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature complement(<163144..>163389)
/locus_tag="VC0165"
/note="ligand binding domain of Tar- and Tsr-related
chemoreceptors; Region: Tar_Tsr_LBD; cl00144"
/db_xref="CDD:206858"
misc_feature complement(162850..163155)
/locus_tag="VC0165"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene complement(163666..164262)
/locus_tag="VC0166"
/db_xref="GeneID:2614082"
CDS complement(163666..164262)
/locus_tag="VC0166"
/note="similar to GB:L42023 SP:P44923 PID:1005987
PID:1220997 PID:1205140; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="NP_229823.1"
/db_xref="GI:15640196"
/db_xref="GeneID:2614082"
/translation="MQRNVMSEIVYGDKQLQILIAAEKLIAEQGFQGLSMHKVAKAAN
MATGTIYRYFRDKDHLLIEVRLHVSQKIAEAVQANLRDDMSLQERFRTMWLNIWTLAG
SCRDIISNRVQYESLPTTTCCNVRELEQKMFAKVELLFDQGKQQGIFKPLDNHLLSAL
SFETTVTLARQYALGFYQLDDSTLDAMIQASWDAITQH"
misc_feature complement(163669..164226)
/locus_tag="VC0166"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(164071..164211)
/locus_tag="VC0166"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 164408..166423
/locus_tag="VC0167"
/db_xref="GeneID:2614083"
CDS 164408..166423
/locus_tag="VC0167"
/note="similar to GB:M87049 SP:P09980 GB:X04794 PID:148182
GB:U00096; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase Rep"
/protein_id="NP_229824.1"
/db_xref="GI:15640197"
/db_xref="GeneID:2614083"
/translation="MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCG
YKARNIAAVTFTNKAAREMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLK
AGFSLFDDQDQLALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQ
QLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQD
TNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQN
YRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAH
KFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRV
LVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGL
ENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSD
LYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLE
FPYVYLIGAEEGILPHQTSIDEENVEEERRLMYVGITRAQRELTFIVCKERRQFGELI
KPSQSRFLDELPQDDIEWEVKKKPVTQEERMAKGQAHIANLRAMFKK"
misc_feature 164411..166405
/locus_tag="VC0167"
/note="ATP-dependent DNA helicase Rep; Region: rep;
TIGR01074"
/db_xref="CDD:130146"
misc_feature 164432..164671
/locus_tag="VC0167"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:222005"
misc_feature <166076..166243
/locus_tag="VC0167"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:222209"
gene complement(166490..166897)
/locus_tag="VC0168"
/db_xref="GeneID:2614876"
CDS complement(166490..166897)
/locus_tag="VC0168"
/note="similar to PID:2231996; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="cytochrome c5"
/protein_id="NP_229825.1"
/db_xref="GI:15640198"
/db_xref="GeneID:2614876"
/translation="MDMSRSLLSVLFAALTFSTAAFALTEADKNAIAERIKPVGDVYL
AGSEPVQAAPTGPRDGATVYGTFCTACHSAGISGAPKTGNAADWGPRIAQGKDVLKNH
ALNGFNAMPPKGTCMDCSDDEIVAAIEHMIAGL"
misc_feature complement(166493..166810)
/locus_tag="VC0168"
/note="Cytochrome c5 [Energy production and conversion];
Region: CycB; COG3245"
/db_xref="CDD:225784"
gene 167187..167263
/gene="tRNA-Arg-1"
/locus_tag="VCt006"
/db_xref="GeneID:2614877"
tRNA 167187..167263
/gene="tRNA-Arg-1"
/locus_tag="VCt006"
/product="tRNA-Arg"
/db_xref="GeneID:2614877"
gene 167299..167374
/gene="tRNA-His-1"
/locus_tag="VCt007"
/db_xref="GeneID:2614841"
tRNA 167299..167374
/gene="tRNA-His-1"
/locus_tag="VCt007"
/product="tRNA-His"
/db_xref="GeneID:2614841"
gene 167436..167512
/gene="tRNA-Pro-1"
/locus_tag="VCt008"
/db_xref="GeneID:2614713"
tRNA 167436..167512
/gene="tRNA-Pro-1"
/locus_tag="VCt008"
/product="tRNA-Pro"
/db_xref="GeneID:2614713"
gene 167583..167658
/gene="tRNA-His-2"
/locus_tag="VCt009"
/db_xref="GeneID:2614714"
tRNA 167583..167658
/gene="tRNA-His-2"
/locus_tag="VCt009"
/product="tRNA-His"
/db_xref="GeneID:2614714"
gene 167720..167796
/gene="tRNA-Pro-2"
/locus_tag="VCt010"
/db_xref="GeneID:2614698"
tRNA 167720..167796
/gene="tRNA-Pro-2"
/locus_tag="VCt010"
/product="tRNA-Pro"
/db_xref="GeneID:2614698"
gene complement(168232..168399)
/locus_tag="VC0169"
/db_xref="GeneID:2614573"
CDS complement(168232..168399)
/locus_tag="VC0169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229826.1"
/db_xref="GI:15640199"
/db_xref="GeneID:2614573"
/translation="MANLSHKSNKERIKKRLNPETISTNRLICKKITYIIGLTIFKKL
KKSQYGWYLLL"
gene 168532..170247
/locus_tag="VC0170"
/db_xref="GeneID:2614574"
CDS 168532..170247
/locus_tag="VC0170"
/note="similar to GB:U00096 PID:1787051; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter ATP-binding protein"
/protein_id="NP_229827.1"
/db_xref="GI:15640200"
/db_xref="GeneID:2614574"
/translation="MSLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGA
GKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSL
NPLFTVEHQLTETIHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQ
RVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVS
NVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEA
KELKPLDVKSHWLGQSQDHRKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSF
AVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQ
MQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLK
YPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTM
LFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEFTGLRE
STTAA"
misc_feature 168532..170208
/locus_tag="VC0170"
/note="ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only]; Region: COG1123"
/db_xref="CDD:224048"
misc_feature 168538..169239
/locus_tag="VC0170"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 168649..168672
/locus_tag="VC0170"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(168658..168663,168667..168675,168817..168819,
169063..169068,169165..169167)
/locus_tag="VC0170"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 168808..168819
/locus_tag="VC0170"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 168991..169020
/locus_tag="VC0170"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 169051..169068
/locus_tag="VC0170"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 169075..169086
/locus_tag="VC0170"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 169153..169173
/locus_tag="VC0170"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 169228..>169338
/locus_tag="VC0170"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:244611"
misc_feature 169435..170142
/locus_tag="VC0170"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 169567..169590
/locus_tag="VC0170"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(169576..169581,169585..169593,169723..169725,
169966..169971,170068..170070)
/locus_tag="VC0170"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 169714..169725
/locus_tag="VC0170"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 169894..169923
/locus_tag="VC0170"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 169954..169971
/locus_tag="VC0170"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 169978..169989
/locus_tag="VC0170"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 170056..170076
/locus_tag="VC0170"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 170134..>170214
/locus_tag="VC0170"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:244611"
gene 170339..171895
/locus_tag="VC0171"
/db_xref="GeneID:2614556"
CDS 170339..171895
/locus_tag="VC0171"
/note="similar to SP:P23847 GB:M35045 GB:X58051 PID:145797
PID:349225; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter substrate-binding
protein"
/protein_id="NP_229828.2"
/db_xref="GI:471237029"
/db_xref="GeneID:2614556"
/translation="MKTMKNKLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLS
GGTLQLSHMVFDPLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTAD
DVVWTFNRLKESADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKF
YTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKG
NVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITF
QMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR
FDLNKAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPK
AQYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDK
LVNAANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDF
PYFGDLVVKE"
misc_feature 170339..171826
/locus_tag="VC0171"
/note="ABC-type dipeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
DdpA; COG0747"
/db_xref="CDD:223818"
misc_feature 170411..171841
/locus_tag="VC0171"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_2; cd08498"
/db_xref="CDD:173863"
gene 171999..173027
/locus_tag="VC0172"
/db_xref="GeneID:2614557"
CDS 171999..173027
/locus_tag="VC0172"
/note="similar to PID:1813496; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="NP_229829.1"
/db_xref="GI:15640202"
/db_xref="GeneID:2614557"
/translation="MALHRAHRFTWKVKGQGMFSFLVKRLYQALIVMFVISLVAFAIQ
DNLGDPLRELVGQSVSEAERQALRDELGLNDPFIIKYSRFVTAAVQGDLGTSYFFKRP
ALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSAIHPKSLFTKIVMAGSSIGISIPV
FLTAIMLMYVFSIELGWXPSYGRGETVNLLGWESGFFTLDGLRHLVLPSIALASIMLP
LFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVA
YTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPT
VNLTGKGA"
misc_feature 172050..173015
/locus_tag="VC0172"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 172329..172955
/locus_tag="VC0172"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(172377..172382,172389..172394,172407..172409,
172440..172451,172455..172484,172491..172496,
172500..172502,172641..172646,172650..172652,
172656..172658,172665..172670,172674..172676,
172686..172691,172698..172700,172749..172751,
172791..172796,172803..172805,172824..172835,
172842..172847,172872..172877,172905..172910,
172917..172922,172926..172931,172938..172943,
172950..172955)
/locus_tag="VC0172"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(172458..172502,172824..172841)
/locus_tag="VC0172"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(172500..172502,172626..172628,172842..172844,
172866..172868,172875..172877,172905..172907)
/locus_tag="VC0172"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(172701..172739,172755..172760,172770..172772)
/locus_tag="VC0172"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 173030..173968
/locus_tag="VC0173"
/db_xref="GeneID:2614558"
CDS 173030..173968
/locus_tag="VC0173"
/note="similar to SP:P37315 PID:349227 PID:466681
GB:U00096 PID:1789964; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="NP_229830.1"
/db_xref="GI:15640203"
/db_xref="GeneID:2614558"
/translation="MSAVSIAPSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAI
SAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSL
TIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKAS
FGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMF
RHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGA
WWITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYKG"
misc_feature 173045..173953
/locus_tag="VC0173"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:224094"
misc_feature 173324..173860
/locus_tag="VC0173"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(173369..173374,173381..173386,173399..173401,
173429..173440,173444..173473,173480..173485,
173489..173491,173570..173575,173579..173581,
173585..173587,173594..173599,173603..173605,
173615..173620,173627..173629,173678..173680,
173720..173725,173732..173734,173753..173764,
173771..173776,173822..173827,173855..173860)
/locus_tag="VC0173"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(173447..173491,173753..173770)
/locus_tag="VC0173"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(173489..173491,173555..173557,173771..173773,
173816..173818,173825..173827,173855..173857)
/locus_tag="VC0173"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(173630..173668,173684..173689,173699..173701)
/locus_tag="VC0173"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 174143..175090
/locus_tag="VC0174"
/db_xref="GeneID:2614284"
CDS 174143..175090
/locus_tag="VC0174"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229831.1"
/db_xref="GI:15640204"
/db_xref="GeneID:2614284"
/translation="MPKWILCCNLSVALLLFAPIASAESDYLCDAQQAAVNQLPVLDA
ACPIGDGLWGKKPKRGDSLFWIQCGMLSKPMPLATVKTLYEHISTDIWVKPEPKGARC
LIGPYSDFALASKELKKVKKLATFEQAFIRQVVKTSAQQPVMKAKPTTAAVAPAANTA
VSEASAPKPASKPKSEEKSAPTVVPAAVPTKPVAKLISTPKPSGNSGFVLRQQVKVGS
QTFALPYSDNPKVQFYMEHDQAWNRLDYDAAQIVCRDLGMRLATEQEWSALLQSKQMQ
QYQWPVQLPYWGEGRKGMFTTGKVNVLKGSSLLNVVCVK"
gene complement(175343..176941)
/locus_tag="VC0175"
/db_xref="GeneID:2614285"
CDS complement(175343..176941)
/locus_tag="VC0175"
/note="similar to GB:AE000782; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="deoxycytidylate deaminase-like protein"
/protein_id="NP_229832.1"
/db_xref="GI:15640205"
/db_xref="GeneID:2614285"
/translation="MFTMNKSSAKKILSTVPSPTKSNSSSSNDLQKRILERRSRELVI
GLCGAIGSGVKALKESLVSSLETYGYEVVDIRISKIISEKTQTSLDGLSAFKRYNRLQ
DLGNSLRETHKSSILAACAIEEIALERTLICQNEIDETSEENDNEPSLIKTTKKIAYI
IDQLKHPDEIKFLRSVYPRNFYLIGLIRTEGERRLNLEEEKISPSEIDTLMRRDRKDV
SHGQQVEKSLFNADYFIHNIHNQKQMLDKSVERFIKLVHGINGISPTIDEIGMHAAYS
AALRSACLSRQVGAAILDNQGNIISTGCNDVPSFGGGLYNSNSLADFRCVHTGRCSND
KHKDILKEEITDILKKSITNTLELKEIVNQITSETKIKTLIEYSRAVHAEMDSLIALA
RNNKETSVDKTLYVTTYPCHNCARHIVAAGIKKVVYVEPYEKSLAMKLHDDSISDNAD
AKNKVCFLPFEGVSSRRYEVFFQMHGDRKDDKTGKVLNINIQDSYHADSEFLDNYAEM
EAKIAQSVNALLNVPSSEEESIQD"
misc_feature complement(176171..>176491)
/locus_tag="VC0175"
/note="hypothetical protein; Provisional; Region:
PRK01184"
/db_xref="CDD:179240"
misc_feature complement(175637..176143)
/locus_tag="VC0175"
/note="Deoxycytidylate deaminase domain. Deoxycytidylate
deaminase catalyzes the deamination of dCMP to dUMP,
providing the nucleotide substrate for thymidylate
synthase. The enzyme binds Zn++, which is required for
catalytic activity. The activity of the...; Region:
deoxycytidylate_deaminase; cd01286"
/db_xref="CDD:29829"
misc_feature complement(order(175700..175702,175709..175714,
175790..175792,175796..175798,176024..176026))
/locus_tag="VC0175"
/note="catalytic motif [active]"
/db_xref="CDD:29829"
misc_feature complement(order(175700..175702,175709..175711,
175790..175792,175796..175798))
/locus_tag="VC0175"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29829"
gene complement(177450..177758)
/locus_tag="VC0176"
/db_xref="GeneID:2614268"
CDS complement(177450..177758)
/locus_tag="VC0176"
/note="similar to GB:M36477 SP:P23789 GB:M36478 PID:143833
PID:1225936; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_229833.1"
/db_xref="GI:15640206"
/db_xref="GeneID:2614268"
/translation="MSFQNPIPLRLKEARKKAKLSQKALGVRIGMDESSASPRMNQYE
KGKHTPDVQTLKLIADELGVPLNYFFCEDDESAELACLIHRMSPEEKKNLLKDLISKK
"
misc_feature complement(<177525..177698)
/locus_tag="VC0176"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:224314"
misc_feature complement(177552..>177698)
/locus_tag="VC0176"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature complement(order(177621..177626,177636..177638,
177657..177659,177690..177695))
/locus_tag="VC0176"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
misc_feature complement(177627..177629)
/locus_tag="VC0176"
/note="salt bridge; other site"
/db_xref="CDD:238045"
gene 177861..178424
/locus_tag="VC0177"
/db_xref="GeneID:2614269"
CDS 177861..178424
/locus_tag="VC0177"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229834.1"
/db_xref="GI:15640207"
/db_xref="GeneID:2614269"
/translation="MRRSMKISAEMYKLLIERTLDGFSVIELRDEFIVIKDSLIDPDE
AYKKVYRQILRFIKKGWLNGEGSGRQKRYFQTDTFKALHAEPKSENVDIEIVLNQDYS
VLVSERNQYKGELEIVLGEIDEYQSLNIRFPELEPKLITLLDEAKERSACLLGKVNGL
TNVLKVLSGQKIVHQKFKTKALLFERT"
gene 179338..180405
/locus_tag="VC0178"
/db_xref="GeneID:2614189"
CDS 179338..180405
/locus_tag="VC0178"
/note="similar to SP:P11768 PID:169498 PID:169500
PID:21415; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="patatin-like protein"
/protein_id="NP_229835.1"
/db_xref="GI:15640208"
/db_xref="GeneID:2614189"
/translation="MPNPPEYEHLKNQVRILSLNGGGARGLFTISLLAEIERIIEEKQ
GINGFKVGDYFDLITGTSIGGILALGLAYGKSARELEDVFRKQAGYIFPEQKYPRFFP
VFRRRYRLARGPLYDSKPLAKTIASMVGEESTFNDLKCRVLIPTVNLSTGKPQFFKTP
HNPEFHRDGRIKLIDAALATSAAPTYFAPHYCVDLDSYFADGGLVANNPSFIGLHEVF
RDMATDFPEAKVSDVKILNVGTLGEEYSLSPSSLAGKSGYLGLWGMGERLVLSAMAAN
QELHKAMLLREFATHDAIGNFVRLDNNIPHEAASDITLDNASASSLSNLASRGRQLAT
EEFTKNKALADFFKVPARKFK"
misc_feature 179353..180402
/locus_tag="VC0178"
/note="Patatin [General function prediction only]; Region:
COG3621"
/db_xref="CDD:226148"
misc_feature 179383..180255
/locus_tag="VC0178"
/note="Patatin-like phospholipase; includes PNPLA8,
PNPLA9, and Pat17; Region: Pat17_PNPLA8_PNPLA9_like;
cd07199"
/db_xref="CDD:132838"
misc_feature order(179401..179406,179410..179412,179521..179523,
179938..179940)
/locus_tag="VC0178"
/note="active site"
/db_xref="CDD:132838"
misc_feature 179515..179529
/locus_tag="VC0178"
/note="nucleophile elbow; other site"
/db_xref="CDD:132838"
gene 180419..181729
/locus_tag="VC0179"
/db_xref="GeneID:2614190"
CDS 180419..181729
/locus_tag="VC0179"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229836.1"
/db_xref="GI:15640209"
/db_xref="GeneID:2614190"
/translation="MRMTWNFHQYYTNRNDGLMGKLVLTDEEKNNLKALRKIIRLRTR
DVFEEAKGIAKAVKKSALTFEIIQEKVSTTQIKHLSDSEQREVAKLIYEMDDDARDEF
LGLTPRFWTQGSFQYDTLNRPFQPGQEMDIDDGTYMPMPIFESEPKIGHSLLILLVDA
SLKSLVAENHGWKFEAKQTCGRIKIEAEKTHIDVPMYAIPKDEFQKKQIALEANRSFV
KGAIFESYVADSITDDSETYELDSENVNLALREGDRKWINSDPKIVEDWFNDSCIRIG
KHLRKVCRFMKAWRDAQWDVGGPSSISLMAATVNILDSVAHDASDLGETMKIIAKHLP
SEFARGVESPDSTDEKPLFPPSYKHGPREMDIMSKLERLPEILSSAESADSKSEALKK
INMAFGNRVTNSELIVLAKALPAFAQEPSSASKPEKISSTMVSG"
gene 181732..183486
/locus_tag="VC0180"
/db_xref="GeneID:2614191"
CDS 181732..183486
/locus_tag="VC0180"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229837.1"
/db_xref="GI:15640210"
/db_xref="GeneID:2614191"
/translation="MKQELHHTLLGCGFRYTPAKQMPKGILLDTKSRRKGYYVKEYST
KGGVFVIALVLWNDPHIQLPFAYILQQPEQYKGRLLPHINFGFCLCYVTQMEADWNSN
DLKSTYQDVDEQIQLTLDNSVASVESGTSNDVELEGEFSAYWQSEEELYLLAKPSRKA
QLKAHLVEAELSSGSIRREYVAACSEQSEELVKWLNQRKFDESSLQEVSITTHCISVK
PNRLAGVNWPPSCLREVLSWLKLVDYSAHARTVTLLMAKRTKRHILLFDVEGQDELAV
YLELNLDVIGKRYFGRNAARKRNINNEAALLGGKFVSANFKRLGVTRADRDTLLSRNQ
SRPDVGNLSQKRIALIGCGTIGGYLAELLLRSGAGCGENYFHLYDNDSFKPHNFARHS
LTAHNFGLAKSIALANSLKEAVHIAQSIKGIDRQFPIQADVLSKYDIVIDATGRPPVS
KRLAAVARTLIADIRPVLIHAFNDGNGRASKVLVDDGRCCYGCMMADPAVYRNNIDLR
FEGIDLAKEKHISCGSTYTPYDAAVSHITAALAQEAVLNTLEHTLPWNYSEHMLDGSR
SKKPRTLKRFSGCNICDE"
misc_feature 181765..182187
/locus_tag="VC0180"
/note="Prokaryotic E2 family B; Region: Prok-E2_B;
pfam14461"
/db_xref="CDD:222765"
misc_feature 182767..183183
/locus_tag="VC0180"
/note="Superfamily of activating enzymes (E1) of the
ubiquitin-like proteins. This family includes classical
ubiquitin-activating enzymes E1, ubiquitin-like (ubl)
activating enzymes and other mechanistic homologes, like
MoeB, Thif1 and others. The common...; Region:
E1_enzyme_family; cd01483"
/db_xref="CDD:238760"
misc_feature order(182782..182784,182788..182790,182794..182796,
182866..182868,182872..182874,182899..182901,
182935..182937,183058..183060,183076..183078)
/locus_tag="VC0180"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238760"
misc_feature order(182794..182796,183079..183081,183142..183147,
183163..183165)
/locus_tag="VC0180"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:238760"
gene 183476..183946
/locus_tag="VC0181"
/db_xref="GeneID:2614172"
CDS 183476..183946
/locus_tag="VC0181"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229838.1"
/db_xref="GI:15640211"
/db_xref="GeneID:2614172"
/translation="MMSDVELVFKDESDCLVVIMGHVVTRLLSYRQLHHLTPESAGVL
IGERRGQHLVVCDISEPGSGDIRQRCRVDRRGVHHQSRVNEAFERSAGTHLYLGEWHT
HPEDRPFPSATDRHSWRRNIVSDESMLLLIVGRKDFWLGKKERELITVFKKIES"
misc_feature 183539..183931
/locus_tag="VC0181"
/note="integrative and conjugative element protein, VC0181
family; Region: ICE_VC0181; TIGR02256"
/db_xref="CDD:131309"
gene complement(183957..184388)
/locus_tag="VC0182"
/db_xref="GeneID:2614173"
CDS complement(183957..184388)
/locus_tag="VC0182"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229839.1"
/db_xref="GI:15640212"
/db_xref="GeneID:2614173"
/translation="MSKSQITKVELEQALGRILSGKTHRVDPARKISVKAVEEEAGLG
DGSAYYYKDIVQKIKESAIRNSPKIRNQNAYEDKISSLRDRLNKEIKLKEKYREQVED
LKEQLSSMASQHNQLTLMIQQYQYKISEFESDIEQLPKYSE"
gene complement(184360..186471)
/locus_tag="VC0183"
/db_xref="GeneID:2614436"
CDS complement(184360..186471)
/locus_tag="VC0183"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229840.1"
/db_xref="GI:15640213"
/db_xref="GeneID:2614436"
/translation="MTPLFELPKNILKENLSEYKNIVQLYSDGKLKKLDDVVVTKNFD
GSPNSHFGDEEWDFRAYLDARIVYKKRIVFSKIVSDDLAREMKLICFCWLYIAGHHRK
GAVIKPSTLIARFSKLSILYKFIDSKGFQSINSLSSEIVFSEFCEYLKGQNYSSGQVE
GIYNALMHVKKAARYLPIQFEIPQGRTQCKFGREITGRLYEGKNQFYAIPTRLMEKIY
RYCFDVVETYHPYKEEIHELLYDMRQNYEEGKRRVDDKIQSGIWQWISEESNEYRVEV
NKHQPASYSSIIDAHIKDTHLESLLPKSALRIQGTIIEIQTICFIVCGALTGMRRSEL
FCLHSNSFKEKEMYGKKYYTLQSEQHKFSQGRGKMAEWVTTKFTQKAIELAEAISRYM
RIQLLEDDDPMSVHNSSCLWLGQGRKSQKPIIRQDNNMRTHFLKICEKAGALITEDDL
DEFRVINPNREPNNADERLKVGNVWPLTTHQLRRTFAVFSKRHNLCHDIAIKEQFKHL
DLPTTEWYGEGGLASKIKALQIDTELQSFLNDVIQESTTQKIHEWYKGCDSGQLMGHM
AGSINKNRISLHKKYKSWDAINEHVKAGRLTLVGTLHSYCMAGYECQMHKVSSPANCM
SCENQLIDKEKAENWDKRYQWVCKQVTDMEAIGSLTSSMYSHFITQIRAAEKVLHKFQ
IPFTRFEIGNDRYEQIPNYEG"
gene complement(186481..188169)
/locus_tag="VC0184"
/db_xref="GeneID:2614437"
CDS complement(186481..188169)
/locus_tag="VC0184"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229841.1"
/db_xref="GI:15640214"
/db_xref="GeneID:2614437"
/translation="MTYTPPKLTIKLRTGIKQTFTYDFTRFFYKGVAFKRDLQRAEPA
HRDADVLRWYRIFTETNEYSDLTKQSYLRDFAKYVRFCDTKRLNPESSAAVESWERHL
IEQVRISSMNVNSARKMISCSKKCLEMLGNPSSEWFSPYGLFRSEPNPTQGYSDRELS
SLIKIINSFFRQVSKQIMENPSIHLNASTNKRTATFTYNNHTHEIASPITKCFSAAYF
MLSYYTWGNTTVLLNMTKPKEKIFDGGKWFEQSVLKPRANKYVSISIGDNGTFHVPKI
ALRFFEQLLQLSSLISSDPHLLWQTKRDHIAPLEQGHIQTFSKWLYETFDLKSDDGEP
LRPMASKFRASGSCRYLAKTGNTTETALLLGNTPYTLSKHYSSGNQVENQKQLLAATH
TIEGAARCSDINSAKEFAKKELGVEVLPYEEFLAKYADKHGEKTIIGTGCKNVYSSQA
DKYRRRNHFSPKDFNVDHLACSDIHNCFDCENQVIIESVEDIWCLLSYRESIIDSKVH
HLNEQHFNKNYSDLLNSINRIVFTIHPKVKRLAEKKLQNEGRHPLWPEGINIDF"
gene complement(188166..189380)
/locus_tag="VC0185"
/db_xref="GeneID:2614438"
CDS complement(188166..189380)
/locus_tag="VC0185"
/note="similar to SP:P06696 PID:581277 PID:154921;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_229842.1"
/db_xref="GI:15640215"
/db_xref="GeneID:2614438"
/translation="METGMVTVVNSNNFDVPRIYPPSSKSTSIHLTGFPTFYSKDHEY
LLPVNLWFNYLVNIRKAVDITASVRALKRYWQFLETNNYSWDNFPANDYLKPTYRFRN
DDLLKAARSGEIAFSTASMYILHVIKFYEWAAHERFITFTEENKPFNYQIVHIANSGM
MSHNNPRFTVRSTDLRIRKPARNEQQKLNPLSQQELLFFADCLKECSDEFIIHQLLQI
QSGLRVEEACTFPFSIVEMPNPHIHRYEVEIGIHNGVHTKFNKTRKVEIPNQLMRKMY
DYSVSERRLKREKKTDGVNKTLLLNNLGNPLCSNNIQQHFRRLRHHIQNKHNIVFSHR
THDLRATYGTYRLDSLLDHLPVGDALALIMGWMGHKDDKTTWKYLRYLRKEKANQNAI
VMLDQILEEAML"
misc_feature complement(188241..188789)
/locus_tag="VC0185"
/note="DNA breaking-rejoining enzymes,
intergrase/recombinases, C-terminal catalytic domain. The
tyrosine recombinase/integrase family share the same
catalytic domain containing six conserved active site
residues. The best-studied members of this diverse
family...; Region: INT_REC_C; cd01182"
/db_xref="CDD:29503"
misc_feature complement(order(188247..188249,188373..188378,
188607..188609,188709..188714))
/locus_tag="VC0185"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29503"
misc_feature complement(order(188247..188249,188274..188276,
188364..188366,188373..188375,188607..188609,
188712..188714))
/locus_tag="VC0185"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29503"
misc_feature complement(order(188247..188249,188274..188276,
188364..188366,188373..188375,188712..188714))
/locus_tag="VC0185"
/note="active site"
/db_xref="CDD:29503"
misc_feature complement(order(188247..188249,188364..188366,
188712..188714))
/locus_tag="VC0185"
/note="catalytic residues [active]"
/db_xref="CDD:29503"
gene complement(189457..190821)
/locus_tag="VC0186"
/db_xref="GeneID:2614842"
CDS complement(189457..190821)
/locus_tag="VC0186"
/EC_number="1.8.1.7"
/note="catalyzes the reduction of 2 glutathione to
glutathione disulfide; maintains high levels of reduced
glutathione in the cytosol; involved in redox regulation
and oxidative defense"
/codon_start=1
/transl_table=11
/product="glutathione reductase"
/protein_id="NP_229843.1"
/db_xref="GI:15640216"
/db_xref="GeneID:2614842"
/translation="MEKVMATHFDYLCIGGGSGGIASANRAAMYGAKVALIEAKDLGG
TCVNVGCVPKKVMWHGAQIAEAMHLYAEDYGFDVDVKNFNWAKLVESRQAYIGRIHQS
YDRVLGNNKVHVIKGFAKFVDAKTVEVNGELYTADHILIAVGGRPSIPNIPGAEYGID
SNGFFELSEQPKRVAVIGAGYIAVEIAGVLNALGTETHLFCRKESPLRSFDPMIIETL
VEVMNSEGPQLHTHSVPKQVVKEADGSLTLHLENGQTYNVDTLIWAIGRHPATDAINL
AATGVATNEQGYIKVDEFQNTNVAGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNK
LNAKMDYQLVPTVVFSHPPIGTIGLTEPQAIAQYGAENVKVYKSSFTAMYTAVTSHRQ
PCKMKLVCAGPEETVVGLHGIGFAVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEE
FVTM"
misc_feature complement(189460..190809)
/locus_tag="VC0186"
/note="glutathione reductase; Validated; Region: PRK06116"
/db_xref="CDD:180410"
misc_feature complement(190063..190305)
/locus_tag="VC0186"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(189460..189792)
/locus_tag="VC0186"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene complement(190915..191754)
/locus_tag="VC0187"
/db_xref="GeneID:2614843"
CDS complement(190915..191754)
/locus_tag="VC0187"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229844.1"
/db_xref="GI:15640217"
/db_xref="GeneID:2614843"
/translation="MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSG
VGRYDLTHEWSEKTGEYKQGIARIWQQDNIPAELDSYLDAIRQLNQGETLRYYPGSPR
VARAHLREQDRMVLTELHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGL
VLIDPPYELAKEYRDVVRAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRK
ILQIELGVAPDTNERGMTASGMIVINPPWTLESQMQTILPFLKQAIAPATGHYKVEWV
VPE"
misc_feature complement(190918..191751)
/locus_tag="VC0187"
/note="Protein involved in catabolism of external DNA
[General function prediction only]; Region: ComJ; COG2961"
/db_xref="CDD:225509"
gene 192034..194076
/locus_tag="VC0188"
/db_xref="GeneID:2614711"
CDS 192034..194076
/locus_tag="VC0188"
/note="similar to GB:M84574 SP:P27237 PID:154214;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="oligopeptidase A"
/protein_id="NP_229845.1"
/db_xref="GI:15640218"
/db_xref="GeneID:2614711"
/translation="MSNPLLTFTDLPPFSAIKPEHVKPAVEQAIADCRHTIDKVLAEN
PQPSWESVIAPIEEVDDRLSRIWSPVSHMNSVVNSDELREAYESCLPLLSEYSTWVGQ
HKGLFEAYKTIKESAEFAKLDRAQQKNISDSLRDFELSGIGLPLQEQKRYGEISKRMS
ELGSKFSNNVLDATMGWTKQITDVNLLAGMPESALAAAQAAAEAKGLEGYLLTLDIPS
YLPVMTYCDNQALRKEVYEAYVTRASDRGPNAGKWDNSEIIAEQLKLRHEIARMLGFS
TYSEKSLATKMAQTTDQVLGFLNDLANKAKPQGEREVEELRQFAESEFGVKQLELWDI
AYYSEKQKQHLFEISDEELRPYFPEQKVVNGLFEVLSRLFGMQVKERQGVDVWHESVR
FFDIFDAQGTLRGSFYLDLYAREHKRGGAWMDECRVRRTTDSGALQTPVAYLTCNFNR
PVGDKPALFTHDEVTTLFHEFGHGIHHMLTQVEVGAVSGINGVPWDAVELPSQFLENW
CWQEEALAFISGHYQTGEPLPKAMLDKMLAAKNFQSAMFILRQLEFGLFDFTLHTTYD
PEVGPKVLETLAEVKKKVAVLPGLEWNRFSHSFSHIFAGGYSAGYYSYLWAEVLSADA
FSRFEEEGIFNRETGQSFLNNILEMGGSEEPMELFKRFRGREPQIDALLRHAGIAA"
misc_feature 192034..194067
/locus_tag="VC0188"
/note="oligopeptidase A; Provisional; Region: PRK10911"
/db_xref="CDD:182832"
misc_feature 192091..194067
/locus_tag="VC0188"
/note="Peptidase family M3 dipeptidyl carboxypeptidase
(DCP); Region: M3A_DCP; cd06456"
/db_xref="CDD:188995"
misc_feature order(193294..193302,193438..193443,193450..193452,
193528..193530,193537..193539,193684..193686,
193810..193815,193831..193836,193846..193854,
193864..193866,193873..193875)
/locus_tag="VC0188"
/note="active site"
/db_xref="CDD:188995"
misc_feature order(193438..193440,193450..193452,193528..193530)
/locus_tag="VC0188"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:188995"
gene 194214..196385
/gene="uvrD"
/locus_tag="VC0190"
/db_xref="GeneID:2614699"
CDS 194214..196385
/gene="uvrD"
/locus_tag="VC0190"
/note="unwinds DNA duplexes with 3' to 5' polarity with
respect to the bound strand and initiates unwinding most
effectively when a single-stranded region is present;
involved in the post-incision events of nucleotide
excision repair and methyl-directed mismatch repair."
/codon_start=1
/transl_table=11
/product="DNA-dependent helicase II"
/protein_id="NP_229847.1"
/db_xref="GI:15640220"
/db_xref="GeneID:2614699"
/translation="MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRI
AWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAH
YLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHI
NAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHIL
VDEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNT
IRLEQNYRSTKTILEASNTLIANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVV
SKIKGWQEQGGTLTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDAL
SYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVL
TGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIEN
LEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLE
FPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQD
KYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFSQTVVKESFNETGFNLGSRVRHP
KFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARLEKV"
misc_feature 194217..196382
/gene="uvrD"
/locus_tag="VC0190"
/note="DNA-dependent helicase II; Provisional; Region:
uvrD; PRK11773"
/db_xref="CDD:236976"
misc_feature 194262..194498
/gene="uvrD"
/locus_tag="VC0190"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:222005"
misc_feature <195882..196052
/gene="uvrD"
/locus_tag="VC0190"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:222209"
gene complement(197130..197798)
/locus_tag="VC0191"
/db_xref="GeneID:2614700"
CDS complement(197130..197798)
/locus_tag="VC0191"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229848.1"
/db_xref="GI:15640221"
/db_xref="GeneID:2614700"
/translation="MNEMSILATLAGVHFIALLSPGPDVALVVQNATQHGRKTGVMIA
LGLSCGILVHLILSLSGISYLVKQQPMLFNLLQLAGGSYLLYLGAGALQSVMAQKNAS
TPTHSPAPSILGNRRQAFTKGMMTNLLNPKALVFFVSLLSSLIPASMSVSGKVSAAAI
LVGLSLTWFSCLAWLLTTSAMQQRMQRITRSVDSICAAVFILAGGVILWQASRAIAQT
FGWL"
misc_feature complement(197163..197792)
/locus_tag="VC0191"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:224199"
gene complement(197873..198685)
/locus_tag="VC0192"
/db_xref="GeneID:2614701"
CDS complement(197873..198685)
/locus_tag="VC0192"
/note="similar to GP:3294250; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="NP_229849.1"
/db_xref="GI:15640222"
/db_xref="GeneID:2614701"
/translation="MVSMDTVNYRPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQ
GVQRFYHQGAWHQVGQGGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQ
IEQVIGFEQLIVQDPTLFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQ
PTVKPLGQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWL
RRLRLEQAMKLLQSGKPGTDVAYQVGFYDQAHFSKAFKATYGLSPSLITRFS"
misc_feature complement(<198332..198646)
/locus_tag="VC0192"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature complement(198029..198154)
/locus_tag="VC0192"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature complement(197894..198133)
/locus_tag="VC0192"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(197882..>197977)
/locus_tag="VC0192"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene complement(198833..200599)
/locus_tag="VC0194"
/db_xref="GeneID:2614572"
CDS complement(198833..200599)
/locus_tag="VC0194"
/note="similar to GB:AL123456; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="gamma-glutamyltranspeptidase"
/protein_id="NP_229851.1"
/db_xref="GI:15640224"
/db_xref="GeneID:2614572"
/translation="MEMGMNWTHTPLALSALMFAMAAQATPNQATDAVAPEQATGFEH
KSLVKAKNWMVTAANPLASEAGASILRQGGNAIDAMVTTQLMLGLVEPQSSGIGGGSF
LVYWDAKKKALTTFDGRETAPLNATPELFLDSTGQPMKFYDAVVGGRSVGTPGTVKLL
WETHRQYGKLEWARLIEPVAKLAEQGFEVSPRLAALIAEDKERLGRFPATKAYFFDAQ
GEPLTAGTLLKNPDYAATLRAIAQQGASAFYQGDIAKDIIATVQNAPGNPGVLAQQDF
DTYQVKQRAPVCAAYQSYQVCGMGLPSSGGLTVGQILALTEQYDLKGWGAQDVKSWQV
LGDASQLAFADRGLYMADQDYVPVPTQGLLDKTYLAERAKLIQPGKALTSAPAGNPPW
HHAQLRSPDQSIELPSTSHFNIVDREGNVVSFTTSIENAFGSRLLVRGFLLNNELTDF
SFATQSEGRPIANRLEPGKRPRSSMAPTIVLQDNQPYLAIGSPGGSRIIGYVAQAIVA
HTQWGMNIQAAINQPHVLNRFGEIELEQGTSAEQFKPALESLGAKVGIKELNSGLHAI
RITAQGLEGAADPRREGVAIGE"
misc_feature complement(198839..200470)
/locus_tag="VC0194"
/note="Gamma-glutamyltransferase [Amino acid transport and
metabolism]; Region: Ggt; COG0405"
/db_xref="CDD:30754"
misc_feature complement(198851..200401)
/locus_tag="VC0194"
/note="Gamma-glutamyltranspeptidase; Region:
G_glu_transpept; pfam01019"
/db_xref="CDD:201554"
gene complement(200761..201669)
/locus_tag="VC0195"
/db_xref="GeneID:2614559"
CDS complement(200761..201669)
/locus_tag="VC0195"
/note="similar to SP:P27844 PID:145580 GB:U00096
PID:1790252; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="rarD protein"
/protein_id="NP_229852.1"
/db_xref="GI:15640225"
/db_xref="GeneID:2614559"
/translation="MFMTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILS
HRVVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANH
MLDASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIA
LATSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNL
LLVCAGVVTTLPLLCFTGAAARLKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAIT
FAFIWSALVIFSVDGLKAGHAARRAR"
misc_feature complement(200770..201654)
/locus_tag="VC0195"
/note="putative chloramphenical resistance permease RarD;
Provisional; Region: PRK15430"
/db_xref="CDD:185328"
gene 201830..203665
/locus_tag="VC0196"
/db_xref="GeneID:2614560"
CDS 201830..203665
/locus_tag="VC0196"
/note="'functions in blocking illegitimate recombination,
enhancing topoisomerase activity, initiating SOS signaling
and clearing blocked replication forks; component of the
RecF recombinational pathway'"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecQ"
/protein_id="NP_229853.2"
/db_xref="GI:161582034"
/db_xref="GeneID:2614560"
/translation="MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGR
DSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLMKDQVDQLKANGVAAECVNSTL
AREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRY
MLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDAD
ERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG
LPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYF
GEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRI
REHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITRNSTLQLTEEARPLLRGE
MNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYVVFSDAT
LIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG"
misc_feature 201839..203662
/locus_tag="VC0196"
/note="ATP-dependent DNA helicase RecQ; Provisional;
Region: PRK11057"
/db_xref="CDD:182933"
misc_feature 201959..202387
/locus_tag="VC0196"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature 201986..202000
/locus_tag="VC0196"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature 202274..202285
/locus_tag="VC0196"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature 202469..202855
/locus_tag="VC0196"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature order(202568..202579,202637..202642,202715..202723)
/locus_tag="VC0196"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature order(202739..202741,202802..202804,202814..202816,
202823..202825)
/locus_tag="VC0196"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
misc_feature 203069..203344
/locus_tag="VC0196"
/note="This DNA-binding domain is found in the RecQ
helicase among others and has a helix-turn-helix
structure; Region: RQC; smart00956"
/db_xref="CDD:214936"
misc_feature 203474..203638
/locus_tag="VC0196"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
gene 203658..203957
/locus_tag="VC0197"
/db_xref="GeneID:2614561"
CDS 203658..203957
/locus_tag="VC0197"
/note="similar to GP:2058400; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="gene 3 protein-like protein"
/protein_id="NP_229854.1"
/db_xref="GI:15640227"
/db_xref="GeneID:2614561"
/translation="MAEFGLGDYLAAEGRLIVRAENFDFEAFAETALRLVNLLSARVL
EKQCDADLHTWLIDFEGCHLLLRGEHYSQSLWLETLTAGQGDEELAFIAKLLQRI"
misc_feature 203667..203951
/locus_tag="VC0197"
/note="Protein of unknown function (DUF3630); Region:
DUF3630; pfam12305"
/db_xref="CDD:152740"
gene 204113..204490
/locus_tag="VC0198"
/db_xref="GeneID:2614282"
CDS 204113..204490
/locus_tag="VC0198"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229855.1"
/db_xref="GI:15640228"
/db_xref="GeneID:2614282"
/translation="MEERRMRLESIHQEVISFERFVWRCLRYALIALLVLLVGLLPGV
IGFMLLAELAAAQAWLNALSMVSGLELPYPVADFHQSAALHLFLAFYSLFIETVFFVS
LATLFAPAIHRVFHRMHCAEEAQ"
gene complement(204526..206361)
/locus_tag="VC0199"
/db_xref="GeneID:2614283"
CDS complement(204526..206361)
/locus_tag="VC0199"
/note="similar to GB:L42023 PID:1006302 PID:1221167
PID:1205301 SP:Q57180; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="hemolysin secretion ATP-binding protein"
/protein_id="NP_229856.1"
/db_xref="GI:15640229"
/db_xref="GeneID:2614283"
/translation="MFMFQWFEKLTEPFPAQEPQTPPKSLVAFCRYYTQGFEKPLLLM
SLLSACVAMAEVTLVRYMGEIVDILSTQERHQFWEMHGERLWTMAALVLVVMPILALV
HSMLLHQTILGNYPMSIRWSTHRYLLKQSIGFFQRDFAGRVATKVMQNANSVRETVLK
LVDLSVYIAVYMVSMLVMIAEADKILVVPILVWLLFYIAIQVYFVPRLKTISTDQANA
QSQMTGRIVDTYTNITTVKLFSHSQRETTYAKSGMKQFLHTVYRQMRTLTSLLYSVDL
INYLLLFSIAALSIQLWLAETVTVGVIAIGITIALRMQGMSKWIMWEIRALFESVGTV
IDSMNTIANPVEIEDRPQAKSLQVKFGELSFSQVRFGYSAQKTVFDDLNLVIQAGEKV
GIVGRSGAGKSTLVNLLLRFYDVQSGQIRIDGQDISHVSQESLRRHIGMITQDTSLLH
RSIRDNILYGNPDADQAAIEEAARQAHAHDFIQELQDEQGRTGYDVQVGERGVKLSGG
QRQRIAIARVLLKNAPILIMDEATSALDSEVESAIQENLHTLMAGKTVIAIAHRLSTI
AAMDRLIVMDEGKIVEQGTHQELLAHKGIYAQLWAHQTGGFIGEA"
misc_feature complement(204544..206295)
/locus_tag="VC0199"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(205489..206241)
/locus_tag="VC0199"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature complement(204553..205275)
/locus_tag="VC0199"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(205153..205176)
/locus_tag="VC0199"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(204679..204681,204772..204777,
205030..205032,205150..205158,205162..205167))
/locus_tag="VC0199"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(205030..205041)
/locus_tag="VC0199"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(204820..204849)
/locus_tag="VC0199"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(204772..204789)
/locus_tag="VC0199"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(204754..204765)
/locus_tag="VC0199"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(204673..204693)
/locus_tag="VC0199"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 206433..208589
/locus_tag="VC0200"
/db_xref="GeneID:2614270"
CDS 206433..208589
/locus_tag="VC0200"
/note="similar to GB:D26562 SP:P06971 GB:M12486 PID:145949
PID:473809; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="iron(III) compound receptor"
/protein_id="NP_229857.1"
/db_xref="GI:15640230"
/db_xref="GeneID:2614270"
/translation="MRKINTNKNDSQIYSRGFIMRNIRPSQLGQYIRRALRLHFIPVV
LVAAPSVMANTNQETEQLETLVVTASALKVETPAQETPKALSIVTQEEIVARAPQKLD
EALRYTSGVTAQPYGADNDTDWLKVRGFDAATYQDGSRLFRDGYYTWLIEPYALERIE
VLKGPASILYGEAPPGGVVNAVQKKPTDIPQGEVGLQVGNDALRTLTLDISDYANQDG
SVRYRLVALMKENDGQLNGTQTSRNYLAPSLSIDISEQTRLTLLASFLEDSGVPTNPF
FPAAGTLIDSNFGHIDPSTNLGQPDYDKYERRQVSLGYLFEHDLNDVWALSQTFNYGD
NDLYLRSSYAFSNDDPSKDTLTQGIVFRDGSTESLSLDNKAVAKWDSARVENTLLMGL
ELQRHQTQGVELDNYSFGTINPFNPNYGNFTPIDESSAADRTITKEQASLYAQYQIKL
DQQWIGLIGGRMDWVDTENESQKNMQRKSRSDAEFSFNAGLMYLASNGVSPYLSYSQS
FDVLSTIDSAKGELYKPLKGEQTEVGVKYQPEFYDGYINLAWFDITQQNALVTNPTTF
VATQTGEMTAQGIEVESVGYVTDSLKLTASYTFTDAKTDETGGKGTQQAGLIPKHQAS
AWLDYDAAQLGLQGWTFGSGVRYIGESKDNPRSSDRTVPSVTLVDLMAGYEITENWQV
QLNINNLFDREFVSGCDYWCYYGQSRSAVLSANYRW"
misc_feature 206565..208586
/locus_tag="VC0200"
/note="ferrichrome receptor precursor protein;
Provisional; Region: PRK14050"
/db_xref="CDD:172542"
misc_feature 206688..208586
/locus_tag="VC0200"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature order(206688..206711,206739..206768,206805..206822,
206832..206855,206889..206921,206955..206981)
/locus_tag="VC0200"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature order(207441..207443,207522..207524)
/locus_tag="VC0200"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene 208720..209505
/locus_tag="VC0201"
/db_xref="GeneID:2614271"
CDS 208720..209505
/locus_tag="VC0201"
/note="similar to PID:41440 GB:U00096 PID:1552729
PID:1786345; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="iron(III) ABC transporter ATP-binding protein"
/protein_id="NP_229858.2"
/db_xref="GI:471237030"
/db_xref="GeneID:2614271"
/translation="MFQLADIQMVRGGRTILAIDHLTIPTHELTVVLGHNGSGKSTLV
SLLSGQQSPDNGQVTLNGQSLSSLPSKTLAKAVAFLPQKLPTSAGLTVRELVRLGRFP
WRGTLGRWRKEDELIIDAALEKTGVSGFAHNLADELSGGERQRAWVAMLLAQQSPVLI
LDEPTSALDVHHQYQLMALLAELNQTQGVGIIVILHDLNLALRYATHIVALKQGQIAF
EGGAELLLDEQRLSDLYHSPIRLIDHPNPISHSSTNKVSIVCA"
misc_feature 208720..209457
/locus_tag="VC0201"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:224045"
misc_feature 208750..209379
/locus_tag="VC0201"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature 208819..208842
/locus_tag="VC0201"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature order(208828..208833,208837..208845,208963..208965,
209203..209208,209305..209307)
/locus_tag="VC0201"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature 208954..208965
/locus_tag="VC0201"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature 209131..209160
/locus_tag="VC0201"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature 209191..209208
/locus_tag="VC0201"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature 209215..209226
/locus_tag="VC0201"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature 209293..209313
/locus_tag="VC0201"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene 209496..210455
/locus_tag="VC0202"
/db_xref="GeneID:2614186"
CDS 209496..210455
/locus_tag="VC0202"
/note="similar to GB:D26562 SP:P07822 GB:M12486 PID:145951
PID:41441; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="iron(III) ABC transporter periplasmic
iron-compound-binding protein"
/protein_id="NP_229859.1"
/db_xref="GI:15640232"
/db_xref="GeneID:2614186"
/translation="MCLMSLWNVRLRNICRPKAVFGWLAALCLFALPVQAQIVLTDSQ
GTHTFAEVPQRVVVLNWDLLEQVLELGIQPVGAPELSSYVQWVVQPEVPSSVQDIGTR
TEPNLEKIAALKPDVILAAGPQQDLLATLGRIAPVVYLPNFSEQDNAAQVAISHFKTL
ATLFGKEAVAQQKLEAMYARFSELKASLQHAFGDTLPAVVTLRFANPTSVFLYTENST
PQYVLEQLGLSSALPQPPKEWGIVQKRLSELQHVEQGYVLYFLPFAEEKKVQKSVLWR
AMPFVQAGRVNSVRPVWSYGGAMSLRYSAEAITESLLAVAPQS"
misc_feature 209565..210440
/locus_tag="VC0202"
/note="iron-dicitrate transporter substrate-binding
subunit; Provisional; Region: fecB; PRK11411"
/db_xref="CDD:183123"
misc_feature 209646..210395
/locus_tag="VC0202"
/note="Fe3+-siderophore binding domain FhuD. These
proteins have been shown to function as initial receptors
in ABC transport of Fe3+-siderophores in many eubacterial
species. They belong to the TroA-like superfamily of
helical backbone metal receptor proteins...; Region: FhuD;
cd01146"
/db_xref="CDD:238566"
misc_feature order(209751..209753,209799..209804,209862..209864,
210126..210128)
/locus_tag="VC0202"
/note="siderophore binding site; other site"
/db_xref="CDD:238566"
gene 210452..212413
/locus_tag="VC0203"
/db_xref="GeneID:2614187"
CDS 210452..212413
/locus_tag="VC0203"
/note="part of the FhuBCD ATP-dependent iron (III)
hydroxamate transporter involved in the high-affinity
transport of Fe(3+)-ferrichrome"
/codon_start=1
/transl_table=11
/product="iron-hydroxamate transporter permease subunit"
/protein_id="NP_229860.1"
/db_xref="GI:15640233"
/db_xref="GeneID:2614187"
/translation="MSVLRLTGLGALTLLLALVSLQWGHNLTLNEQWQLVLGHQAAQS
FAQVNFIYAQLPRAVMAIVVGAVLGLVGSLMQQLTQNRLTSPLTLGTSSGAWLGLIIV
NIWFSDWVADYSALAAMAGALLAFALIISIAGLRNLTGLPLVVSGMVVNILLGSIATA
LVLLNEEFAQNVFMWGAGDLAQNGWEWLTWLLPRLALVFPLLLFAPRVLTLLRLGHEG
AAARGLAVLPAFLFLMAGGIWLVSASITAVGVIGFIGLLTPNIARSLGARTTKMELYS
SALLGALLLLATDMLAMGLSVWAEEVVPSGITAAVIGAPALIWFSRRQLQAQDSLSIS
LSSHRRSPSRWAVMLIAAALLLALSLHIGWQMESASWALPSEFQWPLRWPRMLTALFA
GVGLAIAGTLLQRLIYNPLASPDILGVSSGATFALVFASLFLGQSLQSTHWMTALLGS
AAVLVALLLLGRRHHYAPSSLILTGIAITALLEALVQFTLAKGTGDSYQILLWLSGST
YRATGEQALLLSVGVVGLTLLALGLSRWLTLISIGRGFASARGLSASRASLVLLILVA
LLCALVTATMGPVSFVGLIAPHMAMMLGAQRAPSQLLLAALVGGTLMLWADWLGQALL
FPAQIAAGTLVAIIGGSYFLLLLLSQRAR"
misc_feature 210515..212410
/locus_tag="VC0203"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:236720"
misc_feature 210674..211411
/locus_tag="VC0203"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(210677..210679,210689..210697,211058..211063,
211067..211075,211079..211084,211088..211105,
211109..211117,211238..211240,211256..211258)
/locus_tag="VC0203"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(210692..210694,210698..210700,210713..210715,
210875..210877,210881..210886,210893..210898,
210905..210910,210917..210919,210926..210931,
210935..210937,210968..210973,210980..210982,
211208..211210,211370..211372,211379..211384,
211391..211393,211400..211405)
/locus_tag="VC0203"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(210935..210937,211010..211012,211184..211186,
211196..211198,211325..211327,211361..211363)
/locus_tag="VC0203"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature 211607..212392
/locus_tag="VC0203"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(211661..211663,211673..211681,212042..212047,
212051..212059,212063..212068,212072..212089,
212093..212101,212222..212224,212243..212245)
/locus_tag="VC0203"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(211676..211678,211682..211684,211697..211699,
211859..211861,211865..211870,211877..211882,
211889..211894,211901..211903,211910..211915,
211919..211921,211952..211957,211964..211966,
212192..212194,212348..212350,212357..212362,
212369..212371,212378..212383,212390..212392)
/locus_tag="VC0203"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(211919..211921,211994..211996,212168..212170,
212180..212182,212312..212314,212339..212341)
/locus_tag="VC0203"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(212440..213288)
/locus_tag="VC0204"
/db_xref="GeneID:2614188"
CDS complement(212440..213288)
/locus_tag="VC0204"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229861.1"
/db_xref="GI:15640234"
/db_xref="GeneID:2614188"
/translation="MSVLQRIVSRRTQLSESGRQIGDWVLANAAQAAAMTSQDLAAWA
NVSQSSIVKFTQRLGFKGYSEFKLALTEELGRKQVMVNQPLHSNILADDPVAVIAQKL
VQTKTEAMFHTTNALRLDEFSEAISWIQQAVRVQIIGIGGSALVAKDLAFKLLKLGIT
ALTEQDSHVQIATARTLHSQDVLIAISFSGEKREILIAAEAAKQQGAKVIALTTPNKN
RLREIADLALDTIADETQHRSSAIASRTAQNVLTDLIFLTLTQQRETSARQLIDDISS
DIRQMR"
misc_feature complement(212443..213288)
/locus_tag="VC0204"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:224651"
misc_feature complement(213067..213288)
/locus_tag="VC0204"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature complement(212518..212931)
/locus_tag="VC0204"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:240144"
misc_feature complement(order(212728..212730,212860..212862))
/locus_tag="VC0204"
/note="putative active site [active]"
/db_xref="CDD:240144"
gene 213331..213522
/locus_tag="VC0205"
/db_xref="GeneID:2614174"
CDS 213331..213522
/locus_tag="VC0205"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229862.1"
/db_xref="GI:15640235"
/db_xref="GeneID:2614174"
/translation="MPATLHAFSINGFMVERLFFSMLFTIIPKNGCLKNNLNCDSYHQ
NGIFYSIESPQFEICREAL"
gene 213504..214421
/gene="murQ"
/locus_tag="VC0206"
/gene_synonym="yfeU"
/db_xref="GeneID:2614175"
CDS 213504..214421
/gene="murQ"
/locus_tag="VC0206"
/gene_synonym="yfeU"
/note="catalyzes the cleavage of the lactyl ether moiety
of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form
N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate;
involved in MurNAc dissimilation pathway"
/codon_start=1
/transl_table=11
/product="N-acetylmuramic acid-6-phosphate etherase"
/protein_id="NP_229863.1"
/db_xref="GI:15640236"
/db_xref="GeneID:2614175"
/translation="MPRSLMKIDLTRLVTESRNPASEQIDTLPTLDMLKVINQQDQLV
ALAVAQTLPQVAQAVEAIATAFAQGGRLIYMGAGTSGRLGILDASECPPTYGSQPEQV
IGLIAGGHTAILKAVENAEDNRELGQSDLKALHLSEKDVLVGIAASGRTPYVIAGMEY
ARSVGATVVSLACNPGCPMEAYADIVITPVVGAEVVTGSSRMKAGTAQKLVLNMLTTG
AMIKSGKVFGNLMVDVEATNAKLIQRQTNIVVEATGVSAEQAEAALAACGRHCKTAIL
MILGGFSAEQAAQKLTQHQGFIRAALNQE"
misc_feature 213525..214415
/gene="murQ"
/locus_tag="VC0206"
/gene_synonym="yfeU"
/note="N-acetylmuramic acid-6-phosphate etherase;
Reviewed; Region: murQ; PRK05441"
/db_xref="CDD:180083"
misc_feature 213564..214334
/gene="murQ"
/locus_tag="VC0206"
/gene_synonym="yfeU"
/note="N-acetylmuramic acid 6-phosphate etherase. Members
of this family contain the SIS (Sugar ISomerase) domain.
The SIS domain is found in many phosphosugar isomerases
and phosphosugar binding proteins. The bacterial cell wall
sugar N-acetylmuramic acid...; Region: SIS_Etherase;
cd05007"
/db_xref="CDD:88404"
misc_feature order(213741..213743,213939..213941)
/gene="murQ"
/locus_tag="VC0206"
/gene_synonym="yfeU"
/note="putative active site [active]"
/db_xref="CDD:88404"
gene 214449..215897
/gene="murP"
/locus_tag="VC0207"
/gene_synonym="yfeV"
/db_xref="GeneID:2614844"
CDS 214449..215897
/gene="murP"
/locus_tag="VC0207"
/gene_synonym="yfeV"
/note="belongs to PEP-dependent PTS system; contains the
PTS EIIBC domains; involved in uptake of exogenous
N-acetylmuramic acid (MurNAc); requires crr-encoded enzyme
IIA-glucose component"
/codon_start=1
/transl_table=11
/product="PTS system N-acetylmuramic acid transporter
subunits EIIBC"
/protein_id="NP_229864.1"
/db_xref="GI:15640237"
/db_xref="GeneID:2614844"
/translation="MMAKITQTMMAQVLSLVGGSGNVAKCGNCMTRLRLTLNNSALAD
HAALKKISGVMGVVESDAQLQIILGPGKAQTAADMMNALIESGDNVAPAVSEADLSTI
AAQQKKQMKSKQTSAVQRFLSKFATIFTPLIPGFIAAGLLLGIATLLEQIYVVGQTPS
EFMLDLVAYLKVFGKGLFAFLSILIGYNAQQAFGGSGVNGAILASLFVLGYDPEATKG
IYSGMSEFFGFAIDPRGNIIGVLLAAILGAQVERKVREYMPDDLDMILTSVVTLLIMG
AVTFLIIMPIGGELFKGMSWLFLNLNDNPLGAAILAGLFLISVVFGIHQGFVPVYFAL
MEAQGFNSLFPILAMAGAGQVGASLALYARAKKETTIRTQIKGAIIPGILGIGEPLIY
GVTLPRVKPFVTACIGGAAGGFFIGLISYLGLPVGLNTVFGPSGVVAIPLMTSADGIF
AGMAVFVGGLLISYTVGFAATYFFGCKDVDLS"
misc_feature 214452..215894
/gene="murP"
/locus_tag="VC0207"
/gene_synonym="yfeV"
/note="PTS system N-acetylmuramic acid transporter
subunits EIIBC; Reviewed; Region: murP; PRK09586"
/db_xref="CDD:181971"
misc_feature 214467..214700
/gene="murP"
/locus_tag="VC0207"
/gene_synonym="yfeV"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cd00212"
/db_xref="CDD:29267"
misc_feature 214530..214550
/gene="murP"
/locus_tag="VC0207"
/gene_synonym="yfeV"
/note="active site turn [active]"
/db_xref="CDD:29267"
misc_feature 214533..214535
/gene="murP"
/locus_tag="VC0207"
/gene_synonym="yfeV"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29267"
misc_feature 214800..215888
/gene="murP"
/locus_tag="VC0207"
/gene_synonym="yfeV"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:31455"
gene complement(216004..216492)
/locus_tag="VC0208"
/db_xref="GeneID:2614845"
CDS complement(216004..216492)
/locus_tag="VC0208"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229865.1"
/db_xref="GI:15640238"
/db_xref="GeneID:2614845"
/translation="MERLIEKLLYSSRWIMAPIYLGLSLLLLALGIKFFQEIFHLLPN
IFTIKEVDLILVALSLIDVSLVGGLIVMVMFSGYENFVSKLDVDESEDKLGWLGKLDT
SSLKNKVSASIVAISSIHLLKVFMNTENIESDKIKWYLLLHITFVVSAFAMGYLDKIT
KK"
misc_feature complement(216007..216492)
/locus_tag="VC0208"
/note="hypothetical protein; Provisional; Region:
PRK05208"
/db_xref="CDD:179964"
gene complement(216558..217424)
/locus_tag="VC0209"
/db_xref="GeneID:2614846"
CDS complement(216558..217424)
/locus_tag="VC0209"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229866.1"
/db_xref="GI:15640239"
/db_xref="GeneID:2614846"
/translation="MIYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRG
LEPLLRERFRQRLSRGKIECHLRFEANPAAQSHLTINEGLAQQVINAANQIMHMTGEL
SRINPFQVMQWPGVMETPEQDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQR
LQAISAEVVKVRARMPEILEWQRERLFSKFEEAKIELDASRVEQELILLAQKSDVAEE
LDRLDSHVKEAREVLKKGGSCGRKLDFMMQEFNRESNTLASKSISTDITASGVELKVL
IEQMREQIQNIE"
misc_feature complement(216561..217424)
/locus_tag="VC0209"
/note="hypothetical protein; Provisional; Region:
PRK11820"
/db_xref="CDD:236993"
misc_feature complement(216960..217421)
/locus_tag="VC0209"
/note="YicC-like family, N-terminal region; Region:
YicC_N; pfam03755"
/db_xref="CDD:217714"
misc_feature complement(216561..216818)
/locus_tag="VC0209"
/note="Domain of unknown function (DUF1732); Region:
DUF1732; pfam08340"
/db_xref="CDD:149411"
gene 217588..218304
/gene="rph"
/locus_tag="VC0210"
/db_xref="GeneID:2614709"
CDS 217588..218304
/gene="rph"
/locus_tag="VC0210"
/EC_number="2.7.7.56"
/note="RNase PH; tRNA nucleotidyltransferase; forms
hexamers in Bacillus subtilis; phosphoroltic 3'-5'
exoribonuclease; involved in maturation of tRNA precursors
and removes terminal nucleotides near CCA acceptor arms of
mature tRNAs"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="NP_229867.2"
/db_xref="GI:161582033"
/db_xref="GeneID:2614709"
/translation="MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIE
EGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVV
DLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVA
AVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELL
AVAKKGIADIVAVQKASLLD"
misc_feature 217588..218295
/gene="rph"
/locus_tag="VC0210"
/note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
/db_xref="CDD:178914"
misc_feature 217615..218295
/gene="rph"
/locus_tag="VC0210"
/note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
/db_xref="CDD:206767"
misc_feature order(217645..217659,217687..217689,217693..217695,
217699..217701,217705..217707,217711..217713,
217771..217773,217777..217779,217783..217800,
217804..217806,217813..217818,217840..217845,
217849..217854,217861..217863,217873..217875,
217882..217884,217924..217926,217930..217932,
217936..217938,217942..217950,218173..218187,
218191..218193,218197..218214,218218..218220,
218227..218232,218239..218244,218251..218253)
/gene="rph"
/locus_tag="VC0210"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:206767"
misc_feature order(217780..217782,217843..217845,217948..217965,
218125..218127,218143..218145)
/gene="rph"
/locus_tag="VC0210"
/note="active site"
/db_xref="CDD:206767"
gene 218670..219311
/gene="pyrE"
/locus_tag="VC0211"
/db_xref="GeneID:2614710"
CDS 218670..219311
/gene="pyrE"
/locus_tag="VC0211"
/EC_number="2.4.2.10"
/note="involved in fifth step of pyrimidine biosynthesis;
converts orotidine 5'-phosphate and diphosphate to orotate
and 5-phospho-alpha-D-ribose 1-diphosphate"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase"
/protein_id="NP_229868.2"
/db_xref="GI:161582032"
/db_xref="GeneID:2614710"
/translation="MKAYQREFIEFALEKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
DLARLGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRKEA
KNHGEGGNLVGSKLEGRVMLVDDVITAGTAIRESMELIQANKADLAGVLVAIDRQEKG
KGELSAIQEVERDFGCAVISIVSLTDLITYLEQQGNNTEHLEAVKAYRAQYGI"
misc_feature 218814..219167
/gene="pyrE"
/locus_tag="VC0211"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(218880..218882,218886..218888,219039..219047,
219051..219065,219135..219137)
/gene="pyrE"
/locus_tag="VC0211"
/note="active site"
/db_xref="CDD:206754"
gene complement(219397..220374)
/locus_tag="VC0212"
/db_xref="GeneID:2614702"
CDS complement(219397..220374)
/locus_tag="VC0212"
/note="'Transfers myristate or laurate, activated on ACP,
to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA'"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
acyltransferase"
/protein_id="NP_229869.1"
/db_xref="GI:15640242"
/db_xref="GeneID:2614702"
/translation="MSDQDNGIARHLHNPQFEWRFLHPKHWGTWIGIAFAALLAFIPW
RLRDRLAKPLVPLIIKKNGRVVRRARVNLAYCFPEKSEQEREQILHDTFVKASQFMLG
YSELLVRSTRYNNARGELIGEENLLPLLDSGERVILLVPHSWAIDYAAVMLAARGYKV
ANIMKPQRNPIADWLMHVQRMQYGGRIFTRESGIKPFLRSIQSGYVGYWVPDEDHGPQ
NSVFVPFFATEKATLKGFGKMAKLCKAHVVPLMSCYNSDSGRYEVHILPALQNFPTGD
EEADALAMNRAIEALVTPQPEQYMWNLSLLKTQRDGSEIYDNSHHGDQS"
misc_feature complement(219451..220332)
/locus_tag="VC0212"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature complement(<219874..220245)
/locus_tag="VC0212"
/note="Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis; Region: LPLAT; cl17185"
/db_xref="CDD:247739"
misc_feature complement(219472..220020)
/locus_tag="VC0212"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature complement(order(219730..219738,219874..219885,
219934..219936,219940..219942,219949..219951))
/locus_tag="VC0212"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene complement(220385..221341)
/locus_tag="VC0213"
/db_xref="GeneID:2614703"
CDS complement(220385..221341)
/locus_tag="VC0213"
/note="Acylates the intermediate (KDO)2-lipid IVA to form
(KDO)2-(lauroyl)-lipid IVA"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis lauroyl acyltransferase"
/protein_id="NP_229870.1"
/db_xref="GI:15640243"
/db_xref="GeneID:2614703"
/translation="MSTMSQDKYSKPEFSFSLLHPKYWGVWLGFGLLALLVNLLPYPV
LLKIGRGLGQFSMRFGKKRVHIARRNLELAFPTMSQSEIDAFVLENFKNTGAALIETG
ITWFWPTWRFKRILIDKDTQAIRQHAKTGQGVLLCCVHALNLEITARAFAVLGIGGYG
VYRPHSNPAYEFIQYRGRTRNGNQLINRTDIKQMIRVLRQGERLFYLPDQDYGHNKSV
FVPFFAVEEACTTTGTSILAYTSHCAIVIGSGFRNAQGRYEIMADKSIEADYPQKDET
AAAAYMNKFVEEIILRAPEQWMWLHKRFKSLPDYELTNSRYQ"
misc_feature complement(220424..221311)
/locus_tag="VC0213"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature complement(220427..221014)
/locus_tag="VC0213"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature complement(order(220706..220714,220847..220858,
220907..220909,220913..220915,220922..220924))
/locus_tag="VC0213"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene complement(221338..221928)
/gene="slmA"
/locus_tag="VC0214"
/gene_synonym="ttk"
/db_xref="GeneID:2614568"
CDS complement(221338..221928)
/gene="slmA"
/locus_tag="VC0214"
/gene_synonym="ttk"
/note="FtsZ binding protein; synthetically lethal with a
defect in the Min system; this protein is the first
identified nucleoid occlusion factor which works along
with the Min system to properly position the FtsZ ring
assembly"
/codon_start=1
/transl_table=11
/product="nucleoid occlusion protein"
/protein_id="NP_229871.2"
/db_xref="GI:161582031"
/db_xref="GeneID:2614568"
/translation="MAGNKKINRREEILQALAEMLESNEGASRITTAKLAKQVGVSEA
ALYRHFPSKARMFEGLIEFIEESLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNPG
LTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQL
LGQVEGSLNRFVRSDFKYLPTANFDEYWALLSAQIK"
misc_feature complement(221350..221928)
/gene="slmA"
/locus_tag="VC0214"
/gene_synonym="ttk"
/note="division inhibitor protein; Provisional; Region:
slmA; PRK09480"
/db_xref="CDD:181894"
misc_feature complement(221749..221892)
/gene="slmA"
/locus_tag="VC0214"
/gene_synonym="ttk"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(222087..223286)
/locus_tag="VC0215"
/db_xref="GeneID:2614569"
CDS complement(222087..223286)
/locus_tag="VC0215"
/EC_number="4.1.1.36"
/EC_number="6.3.2.5"
/note="'catalyzes the conjugation of cysteine to
4'-phosphopantothenate to form
4-phosphopantothenoylcysteine, which is then
decarboxylated to form 4'-phosphopantotheine'"
/codon_start=1
/transl_table=11
/product="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase"
/protein_id="NP_229872.1"
/db_xref="GI:15640245"
/db_xref="GeneID:2614569"
/translation="MQSLAGKKILLGISGGIAAYKCAELTRRLVERGATVQVVMTHAA
KEFITPLTMQAVSGRPVSDSLLDPAAEASMGHIELAKWADLVLLAPATADLIARMAAG
MGNDLLTTLILATSAPVAIAPAMNQQMYRNIATQENLQTLIRRGYLTWGPAAGEQACG
DVGPGRMLEPMELVAHCENFFAPKILVGKRVLITAGPTREALDPVRYITNHSSGKMGF
ALAKAAAQLGADVTLVSGPVHLPTPVGVNRIDVQSGLEMHSAVMKEATSHQIFIACAA
VADYRPQTVAEQKIKKSRDNDTLTIEMVKNPDIVASVAALTENRPFTVGFAAETQDVE
TYARSKLVRKNLDMICANDVSIAGQGFNSNDNALTLFWKEGQHSLPLTSKDALASAVM
HLIHEQM"
misc_feature complement(222096..223229)
/locus_tag="VC0215"
/note="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated;
Region: PRK05579"
/db_xref="CDD:235513"
misc_feature complement(222882..223229)
/locus_tag="VC0215"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:217035"
misc_feature complement(222174..222731)
/locus_tag="VC0215"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:217913"
gene 223454..225148
/locus_tag="VC0216"
/db_xref="GeneID:2614570"
CDS 223454..225148
/locus_tag="VC0216"
/note="similar to PID:1255679; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="NP_229873.1"
/db_xref="GI:15640246"
/db_xref="GeneID:2614570"
/translation="MKGNLMLSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQ
KELENYRTDLIDAKKKELQAYLMMGVTAVKPLYESDKAGENQAQAKQILKAMRFDSDG
YFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKP
TINAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSV
VGLVFTIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFN
AFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSAT
AREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAA
KITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEI
GEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTAS
AAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFKL"
misc_feature 223604..223873
/locus_tag="VC0216"
/note="Cache domain; Region: Cache_2; pfam08269"
/db_xref="CDD:149365"
misc_feature 224159..224302
/locus_tag="VC0216"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(224159..224161,224168..224173,224177..224182,
224189..224194,224198..224200,224252..224257,
224261..224266,224273..224278,224282..224287,
224294..224299)
/locus_tag="VC0216"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 224336..225142
/locus_tag="VC0216"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 224438..224941
/locus_tag="VC0216"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(224462..224467,224474..224479,224486..224488,
224495..224500,224504..224509,224516..224518,
224525..224530,224537..224539,224546..224551,
224558..224563,224570..224572,224579..224584,
224588..224593,224603..224605,224609..224614,
224621..224623,224630..224635,224642..224647,
224654..224656,224663..224665,224672..224677,
224684..224686,224696..224698,224705..224707,
224726..224728,224738..224740,224747..224749,
224756..224761,224768..224770,224777..224782,
224789..224794,224798..224803,224810..224815,
224852..224857,224864..224866,224873..224878,
224885..224887,224894..224899,224903..224908,
224915..224920,224927..224929,224936..224941)
/locus_tag="VC0216"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 224672..224773
/locus_tag="VC0216"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 225260..225934
/gene="radC"
/locus_tag="VC0217"
/db_xref="GeneID:2614562"
CDS 225260..225934
/gene="radC"
/locus_tag="VC0217"
/note="Involved in DNA double-strand break repair and
recombination. Promotes the annealing of complementary
single-stranded DNA and by simulation of RAD51
recombinase"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadC"
/protein_id="NP_229874.1"
/db_xref="GI:15640247"
/db_xref="GeneID:2614562"
/translation="MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVL
ALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFVQLQAVLEMTQRYLAETLKRGDA
LTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSF
AERGWI"
misc_feature 225260..225931
/gene="radC"
/locus_tag="VC0217"
/note="hypothetical protein; Reviewed; Region: PRK00024"
/db_xref="CDD:178801"
misc_feature 225593..225916
/gene="radC"
/locus_tag="VC0217"
/note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466;
cd08071"
/db_xref="CDD:163702"
misc_feature order(225626..225628,225776..225778,225782..225784,
225806..225808,225815..225817)
/gene="radC"
/locus_tag="VC0217"
/note="MPN+ (JAMM) motif; other site"
/db_xref="CDD:163702"
misc_feature order(225776..225778,225782..225784,225815..225817)
/gene="radC"
/locus_tag="VC0217"
/note="Zinc-binding site [ion binding]; other site"
/db_xref="CDD:163702"
gene 226229..226465
/gene="rpmB"
/locus_tag="VC0218"
/db_xref="GeneID:2614563"
CDS 226229..226465
/gene="rpmB"
/locus_tag="VC0218"
/note="required for 70S ribosome assembly"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="NP_229875.1"
/db_xref="GI:15640248"
/db_xref="GeneID:2614563"
/translation="MSRVCQVTGKRPAVGNNRSHAKNATKRRFLPNLQTHRFWVESEK
RFVKLRLTAKGMRIIDKKGIDAVLVEIRARGENV"
misc_feature 226229..226456
/gene="rpmB"
/locus_tag="VC0218"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:234736"
gene 226479..226646
/gene="rpmG"
/locus_tag="VC0219"
/db_xref="GeneID:2614279"
CDS 226479..226646
/gene="rpmG"
/locus_tag="VC0219"
/note="'in Escherichia coli BM108, a mutation that results
in lack of L33 synthesis had no effect on ribosome
synthesis or function; there are paralogous genes in
several bacterial genomes, and a CXXC motif for zinc
binding and an upstream regulation region of the paralog
lacking this motif that are regulated by zinc similar to
other ribosomal proteins like L31; the proteins in this
group lack the CXXC motif'"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="NP_229876.1"
/db_xref="GI:15640249"
/db_xref="GeneID:2614279"
/translation="MAKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKYDPVVR
QHVVYKEAKIK"
misc_feature 226479..226637
/gene="rpmG"
/locus_tag="VC0219"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00595"
/db_xref="CDD:179075"
gene 226867..227355
/locus_tag="VC0220"
/db_xref="GeneID:2614280"
CDS 226867..227355
/locus_tag="VC0220"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229877.1"
/db_xref="GI:15640250"
/db_xref="GeneID:2614280"
/translation="MIMRVSPNRRRRWNNILILSVIAFIAVINLPTVIKSYLLPDPAS
QFPSLLRTDATLQALYFPAFSLEKSREEWQSEPELSVDGQELVQRWHALTGTEVDEAT
YRALQPTLPNAQTIEVWYADREEPQRITFYQTPQFWLLKNWQDRWIAVSAEASYLFPA
PL"
gene 227365..228174
/locus_tag="VC0221"
/db_xref="GeneID:2614281"
CDS 227365..228174
/locus_tag="VC0221"
/EC_number="3.2.2.23"
/note="Involved in base excision repair of DNA damaged by
oxidation or by mutagenic agents. Acts as DNA glycosylase
that recognizes and removes damaged bases"
/codon_start=1
/transl_table=11
/product="formamidopyrimidine-DNA glycosylase"
/protein_id="NP_229878.1"
/db_xref="GI:15640251"
/db_xref="GeneID:2614281"
/translation="MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELKQL
EGQTILAIHRRAKYLIIETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKR
LRYNDPRRFGAWLWCAPDESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIMD
NAAVVGVGNIYANESLFTSRLHPLRPAHSLSLEEWQTLVANIKQVLQVAIKQGGTTLK
DFTQSDGKPGYFAQELQVYGKAKQPCPHCGEPLCEQKIAQRNTFFCPQCQH"
misc_feature 227365..228171
/locus_tag="VC0221"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:234899"
misc_feature 227368..227718
/locus_tag="VC0221"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature order(227368..227373,227533..227535,227575..227577,
227581..227589,227629..227634,227686..227697)
/locus_tag="VC0221"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature 227368..227370
/locus_tag="VC0221"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature order(227371..227382,227386..227391,227398..227400,
227524..227535,227587..227589)
/locus_tag="VC0221"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature order(227371..227373,227533..227535)
/locus_tag="VC0221"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature 227575..227577
/locus_tag="VC0221"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature order(227584..227586,227689..227691,227695..227697)
/locus_tag="VC0221"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature 227587..227589
/locus_tag="VC0221"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature order(227632..227634,227692..227694)
/locus_tag="VC0221"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature 227749..228027
/locus_tag="VC0221"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
misc_feature 228085..228171
/locus_tag="VC0221"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene complement(228271..228765)
/gene="coaD"
/locus_tag="VC0222"
/db_xref="GeneID:2614272"
CDS complement(228271..228765)
/gene="coaD"
/locus_tag="VC0222"
/EC_number="2.7.7.3"
/note="Catalyzes the conversion of ATP and pantetheine
4'-phosphate to diphosphate and 3'-dephospho-coA"
/codon_start=1
/transl_table=11
/product="phosphopantetheine adenylyltransferase"
/protein_id="NP_229879.1"
/db_xref="GI:15640252"
/db_xref="GeneID:2614272"
/translation="MSQKRLSRVIYPGTFDPITNGHLDLIERAAQMFDEVIIAVAASP
SKNTLFTLEERVEFARQVTSHLDNVSAKGFSGLLVDFAKAEKANVLIRGLRTTVDFEY
EFGLTNMYRRLMPGLESVFLTPAEEHAFISSTLVREVAIHGGNVDEFVPAIVANALHQ
KKKI"
misc_feature complement(228277..228744)
/gene="coaD"
/locus_tag="VC0222"
/note="phosphopantetheine adenylyltransferase;
Provisional; Region: coaD; PRK00168"
/db_xref="CDD:234674"
misc_feature complement(228286..228744)
/gene="coaD"
/locus_tag="VC0222"
/note="Phosphopantetheine adenylyltransferase; Region:
PPAT; cd02163"
/db_xref="CDD:173914"
misc_feature complement(order(228373..228375,228382..228384,
228394..228396,228436..228438,228448..228450,
228457..228462,228481..228483,228487..228492,
228532..228540,228628..228630,228643..228645,
228691..228693,228700..228705,228721..228735))
/gene="coaD"
/locus_tag="VC0222"
/note="active site"
/db_xref="CDD:173914"
misc_feature complement(228700..228711)
/gene="coaD"
/locus_tag="VC0222"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:173914"
gene 228876..229913
/locus_tag="VC0223"
/db_xref="GeneID:2614273"
CDS 228876..229913
/locus_tag="VC0223"
/note="similar to GB:L42023 SP:P44011 PID:1003930
PID:1222457 PID:1204774; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="ADP-heptose--LPS heptosyltransferase II"
/protein_id="NP_229880.1"
/db_xref="GI:15640253"
/db_xref="GeneID:2614273"
/translation="MKKLLVIRNDKIGDFMLAWPSFAMLKASLPDCHITALVPKYTAA
LAELCPWIDAVIIDPGQQADKAQHKQLVQTVKAQQFDASINLFSTMYNALLVWKARIP
YRLAPATKLAQIFYQHRIKQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTF
PAEQLAAQRSKLAEQLDIGPDKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHKQVV
LTAGPGEEEKAAQLQSLLAEQGVLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIA
AALDVPTVGFFPAKRSATPLRWRPLNSQGKHIAFCPPPADDKANQENMGRIDMKSVLT
ELAPWLRSVQL"
misc_feature 228876..229898
/locus_tag="VC0223"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature 228882..229817
/locus_tag="VC0223"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature order(229353..229358,229533..229535,229638..229643,
229677..229679,229686..229691,229698..229700)
/locus_tag="VC0223"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(229975..230754)
/locus_tag="VC0224"
/db_xref="GeneID:2614184"
CDS complement(229975..230754)
/locus_tag="VC0224"
/note="similar to GB:L42023 SP:P44029 PID:1005522
PID:1220737 PID:1204904; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide biosynthesis
glycosyltransferase"
/protein_id="NP_229881.1"
/db_xref="GI:15640254"
/db_xref="GeneID:2614184"
/translation="MSKPTLAVALIVKNEARHLDECLQTVHDWVDEIVVLDSGSHDET
EQVARRYTEKFYVNAKWPGFGLQRQLAQSYVQSDYVLWLDADERVTPELKQSILQAVA
ANKPDTLYQFARLSWVFGRFIRHSGWYPDRVLRLYPTQLTRYNDALVHEKVHVEPSMK
VETLAGDAIHYTYNDVHHYLVKSAGYAKAWADQRQAKGKKASLSQGIVHAVGCFLKMY
LLKRGFLDGKQGFLIALLSAHSTFVKYADLWARDNDEHYKR"
misc_feature complement(229978..230751)
/locus_tag="VC0224"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:223539"
misc_feature complement(230053..230742)
/locus_tag="VC0224"
/note="UDP-glucose LOS-beta-1,4 glucosyltransferase is
required for biosynthesis of lipooligosaccharide; Region:
Beta4Glucosyltransferase; cd02511"
/db_xref="CDD:133005"
misc_feature complement(order(230497..230499,230503..230505))
/locus_tag="VC0224"
/note="putative metal binding site; other site"
/db_xref="CDD:133005"
gene complement(230797..231870)
/locus_tag="VC0225"
/db_xref="GeneID:2614185"
CDS complement(230797..231870)
/locus_tag="VC0225"
/note="similar to GB:L42023 PID:1003419 PID:1222185
PID:1204517 PID:1573227; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide biosynthesis protein"
/protein_id="NP_229882.1"
/db_xref="GI:15640255"
/db_xref="GeneID:2614185"
/translation="MAMALFQSAPHSLCILRLSAIGDVCNTIAAVQAIQRQWPQTRIT
WVTGKLEAELIQSLPDIQVIVFDKKLGWRAYTQLWQQLKSERFDALLHMQYAFRASIA
TLGIKARYKLGFDAARSQDFQTWFTNVKVPSPDKMHVLDGLLAFVEHLGIRDIEPKWS
LTCQPDDLTWAEAQFQPEQPRLVVVPGASKAYKNWTAEGYAAVIEHAQQQGWQVILAG
SPAQVERDLAAQVEQALAHPVLNLVGKSTLQQMLALLAKADLVIAPDTGPAHMANAMH
TPIIGLYAHHNPERTGPYHYRHYVVSAYQEALLAETGKMPQQVDWRTRVKDPNAMQRI
TAQQVIAMFERAAADIMATQVND"
misc_feature complement(230836..231843)
/locus_tag="VC0225"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature complement(230848..231837)
/locus_tag="VC0225"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(231058..231060,231067..231072,
231079..231081,231115..231120,231220..231222,
231316..231321))
/locus_tag="VC0225"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene 231950..232705
/locus_tag="VC0227"
/db_xref="GeneID:2614177"
CDS 231950..232705
/locus_tag="VC0227"
/note="catalyzes the phosphorylation of
3-deoxy-D-manno-octulosonic acid at the 4-OH position"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid kinase"
/protein_id="NP_229884.1"
/db_xref="GI:15640257"
/db_xref="GeneID:2614177"
/translation="MQSKTAKLPDNDRNRPLIQTFNDAQQKVWFDDALLHEDPSQCCN
PEFWQQNGKVLGSATGRGTTWFVQLQQTQGALRHYRRGGLFGKLVADSYWFTGWEKTR
SYQEFMLLNHLRDAGVNVPRPIAARVQKHGLLYKADLLSEKVPNARDLVSILQESPIS
DELYRKIGREIRKMHDAQVNHTDLNIHNILIDDQEKVWIIDFDKCYVQIGDSWKQGNL
KRLKRSFEKEVCKRGINWSLEAFAIISSYKHEE"
misc_feature 232001..232696
/locus_tag="VC0227"
/note="3-deoxy-D-manno-octulosonic-acid kinase; Reviewed;
Region: PRK01723"
/db_xref="CDD:179326"
misc_feature order(232310..232312,232358..232369,232394..232396,
232511..232513,232517..232519,232547..232552)
/locus_tag="VC0227"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88273"
gene 232709..233668
/locus_tag="VC0228"
/db_xref="GeneID:2614178"
CDS 232709..233668
/locus_tag="VC0228"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229885.1"
/db_xref="GI:15640258"
/db_xref="GeneID:2614178"
/translation="MLFDQITFVIQGPITPSITSTSVRRLRSIFPGCQIIVSTWEGEN
TQDIEADLIIYNKDPGSTIFVYSKRNDAIPVNINRQIVSTVSGLRHVKTKFAAKLRAD
NILNKRRVLEIFEQFPLRKEGYAVLNNRLVCSNYFAKEFERGLSVPFFFSDFFQFGEV
EDLLKVWDCDLYSDYDFKSTLSGKKQHKYYPNDSVNVEQKIWSNAARKLYPYELKDEH
GDHFARQQSYNFMINNLIIVDGDELGLDVPQRLRHSNSYPYDFFTFQRWKWLYENEFL
KTKNTPLNFKFFWYLSLIIKTIRKGVRLKLRKTLTPIFIKVRE"
misc_feature 232724..233644
/locus_tag="VC0228"
/note="WavE lipopolysaccharide synthesis; Region: WavE;
pfam07507"
/db_xref="CDD:219438"
gene complement(233672..234601)
/locus_tag="VC0229"
/db_xref="GeneID:2614450"
CDS complement(233672..234601)
/locus_tag="VC0229"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229886.1"
/db_xref="GI:15640259"
/db_xref="GeneID:2614450"
/translation="MIKIDDEAITFVVQGPVQASASRQQIAGITEQCLNSIRRFFPKS
TIILSTWKGQPLDGLDYDQVLELDDPGANTVFYDGQPIKLNNNRQMYSTHMGLKAVKT
PYAVKLRTDNLLTGRQFVELYERYADLPRAQNYQFLTQRVLTSSTFFISSHYGHPVHF
HKSDLFDFGLTQDLLTIWSDRWIPELHFTLKPGYKARHPATEQVLCLNWISALLDEEH
HIESKTCDHAGLGENFWPQFMANNLLMDCPENIGLDVTERFYKRGNLALEYDLKDWLH
LNQITSIPYDKKRLYRYYRNQIGRILKKIHSFN"
misc_feature complement(233678..234577)
/locus_tag="VC0229"
/note="WavE lipopolysaccharide synthesis; Region: WavE;
pfam07507"
/db_xref="CDD:219438"
gene complement(234598..235341)
/locus_tag="VC0230"
/db_xref="GeneID:2614451"
CDS complement(234598..235341)
/locus_tag="VC0230"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229887.1"
/db_xref="GI:15640260"
/db_xref="GeneID:2614451"
/translation="MIVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYF
ASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQG
VDYQGSITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVIQT
AEKNPISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNLLIQKGLN
IHYHLIARHEVIFCGVPDEYTDFLRQPQP"
misc_feature complement(234625..235338)
/locus_tag="VC0230"
/note="GT2_BcbE_like is likely involved in the
biosynthesis of the polysaccharide capsule; Region:
GT2_BcE_like; cd04183"
/db_xref="CDD:133026"
misc_feature complement(order(234997..234999,235321..235323,
235327..235329))
/locus_tag="VC0230"
/note="Ligand binding site; other site"
/db_xref="CDD:133026"
gene complement(235338..236921)
/locus_tag="VC0231"
/db_xref="GeneID:2614452"
CDS complement(235338..236921)
/locus_tag="VC0231"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229888.1"
/db_xref="GI:15640261"
/db_xref="GeneID:2614452"
/translation="MFLIMSGAYVGQELESEFGRIPPSFLPLGNRRLFQHQVALAPQG
VKVYLSLPESYVVSEIDLQWLEQNQVTIIATPDGLSLGASLVAALNISGHSLNAPLHI
LYGDTLFNQLPVGDDIVSVSTAKDSYNWAVLTNDDVDWLQDANTPMSHESQRIIDGYF
KFSHPRELVRCITQSEWKFIAGLNRYHKSVGLSAVNSIGWLDFGHVNTYYHSKAEFTT
QRAFNELTITAKWIEKSSIKNQKIAAEAYWFDNLPMAMRGFIPQYLGSQNSEGKISYR
LEYLYLTALNELFVFSRLPSQIWQKILASAVEFLSLCLEQAVEPNAPINTLDILFADK
TALRLNEFCAARHITLEDQWQFAGQDISLAQILRDSQKHLPDGKPLLGVLHGDFCFSN
ILYDFRANKIKTIDPRGMTPDGQKTLYGDIRYDLAKLSHSILGLYDWIIAGYYHVEIA
DNAIELKIAEQSHHKETQQGFIELIEQTFGLTAKNLYAMQIQLFLSMLPLHADDRRRQ
DALFANAFRLHQILLRLDQ"
gene complement(236912..237292)
/locus_tag="VC0232"
/db_xref="GeneID:2614425"
CDS complement(236912..237292)
/locus_tag="VC0232"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229889.1"
/db_xref="GI:15640262"
/db_xref="GeneID:2614425"
/translation="MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIV
ISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAV
RPSEFASMNLEEIHQLFEKEKSCS"
misc_feature complement(<237029..237283)
/locus_tag="VC0232"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(order(237149..237154,237266..237274))
/locus_tag="VC0232"
/note="active site"
/db_xref="CDD:119389"
misc_feature complement(237257..237274)
/locus_tag="VC0232"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature complement(237152..237154)
/locus_tag="VC0232"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(237289..238608)
/locus_tag="VC0233"
/db_xref="GeneID:2614426"
CDS complement(237289..238608)
/locus_tag="VC0233"
/note="catalyzes the transfer of
2-keto-3-deoxy-D-manno-octulosonic acid to lipid A"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="NP_229890.1"
/db_xref="GI:15640263"
/db_xref="GeneID:2614426"
/translation="MDTHQSRRSREKIMLLRTLYTLLLTLAAPFLLYGLYRRRQGKPS
VGKRWKEHFGITPPLKTTTPPIWIHAASVGETLAVTPLIKQIKQRSPNTPILLTTTTP
TGAEQAEKLADWVEHRYTPIDFSFAVRGFLRRVRPCQLIIVETELWPNTLHTVAKAGL
PITLVNARLSEKSYRGYQRIHPFFNSMAKPLSLVLCQFADDAQRFIQLGVAETKIKIT
GSIKFDINITYEVIAQGEALRTALGKHRPVWIAASTHQGEDEIVLAAHQEILKQHPNA
LLILVPRHPERFAAVHKLAASLFSVQTRSSQQTITSDTQVYLGDTMGEMLVLLGASDV
CFMGGSLVGKKVGGHNLLEPAALAKPIVTGPSFYNFTDITHALINAHACVIADQPETI
AKQVNHWFSDAQERQQCGKNALAIVMQNRGALENTLTELGFTKEFAQ"
misc_feature complement(237316..238503)
/locus_tag="VC0233"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:180233"
misc_feature complement(237928..238470)
/locus_tag="VC0233"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:203003"
misc_feature complement(237370..237846)
/locus_tag="VC0233"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
gene complement(238569..239357)
/locus_tag="VC0234"
/db_xref="GeneID:2612946"
CDS complement(238569..239357)
/locus_tag="VC0234"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229891.1"
/db_xref="GI:15640264"
/db_xref="GeneID:2612946"
/translation="MNMSKVTVLIANRLIRLTGNLFKMLSYPFHWVFPKLRFTIPAYS
PAKLKMRANATIPRTIWQTNFTDQASLPVYLNYLFNRLMSLNCDYRYVSTEARGEFLK
EHTSPEVYDAYSRLTNGAAQADLWRLVVLNTYGGVYMDIDATLVWPLDKLLGDSQELY
IRIKNNTEITNYFIATAPNNPDLQATIEQVVYNVNHYEPSMGVYHSTGPTVLNNILSA
KAVIHTQDRKYVCIQGTFTNEHFQYIDKPRGKWTHINPEDLVKK"
misc_feature complement(238572..239357)
/locus_tag="VC0234"
/note="Mannosyltransferase OCH1 and related enzymes [Cell
envelope biogenesis, outer membrane]; Region: OCH1;
COG3774"
/db_xref="CDD:33569"
misc_feature complement(238887..239144)
/locus_tag="VC0234"
/note="Glycosyltransferase sugar-binding region containing
DXD motif; Region: Gly_transf_sug; pfam04488"
/db_xref="CDD:191003"
gene complement(239354..240403)
/locus_tag="VC0235"
/db_xref="GeneID:2612947"
CDS complement(239354..240403)
/locus_tag="VC0235"
/note="similar to PID:992970; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide biosynthesis protein"
/protein_id="NP_229892.1"
/db_xref="GI:15640265"
/db_xref="GeneID:2612947"
/translation="MKHLWFEKGAYASKAARQYLNDHFNPLAVKKTAVIRHAALGDQV
IVRPFLVEARKFFPNAEITLVTVSNYLYGTPSDLADKTVIMKSRDDSKQLSLRQKWQD
YNQLEAQDIIFDVAGTNRSYWMTLLTKAKLKVGFPYKPFLCGTLYNLAVFRSDFQPEV
ECMLDMLKILGHNPSYPLDFAYPDNRQICDHAAPYIVYFSGASQLRKILTKPEMRAVI
EQTIQQQPNVKHVFLEGKNEFEKGEYLQDLADNGSLTIQPCLPLDDLVTFIAKATLVI
APDTGIRNVAISTHTPTVGIFYATVPFRYTPLYEAHTIVMNANGEKPSTEQITSAIDT
TLKMRLAAAKNTQEQ"
misc_feature complement(239357..240319)
/locus_tag="VC0235"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature complement(239459..240313)
/locus_tag="VC0235"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(239549..239551,239558..239563,
239570..239572,239606..239611,239705..239707,
239807..239812))
/locus_tag="VC0235"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(240400..241440)
/locus_tag="VC0236"
/db_xref="GeneID:2614847"
CDS complement(240400..241440)
/locus_tag="VC0236"
/note="similar to PID:1916630; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="ADP-heptose--LPS heptosyltransferase II"
/protein_id="NP_229893.1"
/db_xref="GI:15640266"
/db_xref="GeneID:2614847"
/translation="MMKILVIGPSWVGDMVMSQSLYQRLKQQHPDAQIDVLAPAWCKP
ILERMPEVNQAIEMTIGHGAFNLLGRRAIGCELRDNRYTHAIVLPNSAKSALIPWFAN
IPKRTGWKGEFRYGLLNDLRPDKRVFQYMVERYVALAHPKATMLADVSLEHCPRPKLV
IDAIVQQAARQRLSLVSSRPVIGLCPGAEFGPAKRWPDHYYAEVARYAIEQGFQVWLF
GSAKDHSVTTQIQQALSEEQREYCANLAGETSLIEAVDLLAACHTVVSNDSGLMHVSA
AVGCNIVAIYGSSSPKYTPPLTDKLAVVHTEIECRPCFKRVCPLEHLNCLNQLKPAQV
IKALDKFIGKDS"
misc_feature complement(240403..241440)
/locus_tag="VC0236"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature complement(240421..241434)
/locus_tag="VC0236"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(240619..240621,240628..240633,
240640..240642,240676..240681,240787..240789,
240886..240888,241027..241029))
/locus_tag="VC0236"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(241437..242636)
/locus_tag="VC0237"
/db_xref="GeneID:2614848"
CDS complement(241437..242636)
/locus_tag="VC0237"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229894.1"
/db_xref="GI:15640267"
/db_xref="GeneID:2614848"
/translation="MNNKITKTSIFLTISLLLITPGFSVVAVGLLTLYSSVKLIKNGL
NLNKFDIIPLITLSAYFLSNLPITIIDGDTLRYLDAGIRALLCIPMYFFIKNEISKGA
NLDNTLCTSTILASFGALAFAFYQFFILNMPRVDGFLFSINFGYLAAALAILSFGLSF
TQTRFKYYLYLSVVAATVATILTLTRGAILTLLFVFILFFIVNVRKIKFKQTLVFTLI
SFLLVSVSYQFSPRIQERVDFTIFEISSIASNNIHAAASSGGRLQLWYAAVEAFKHNP
IWGTTYSERESLNIELFKEGKVDEWTSTVPRGHAHSQYFEAIASNGTLGILAIFAMLI
LPFGVFLNDYRKTGSPISQTGYLFAFGFIIFCLTEAPLQANLIGTFYGFMVAIFYAYI
AAKRAKN"
misc_feature complement(241443..242576)
/locus_tag="VC0237"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:225844"
misc_feature complement(241647..>242024)
/locus_tag="VC0237"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:218334"
gene complement(242638..243204)
/locus_tag="VC0238"
/db_xref="GeneID:2614849"
CDS complement(242638..243204)
/locus_tag="VC0238"
/note="similar to GB:L77117 PID:1591716; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="hexapaptide repeat-containing transferase"
/protein_id="NP_229895.1"
/db_xref="GI:15640268"
/db_xref="GeneID:2614849"
/translation="MQMAGFGLIAKLRNKIRVKPNNKIQIGKNTRIRYCDIYVNGNNN
QLIIHNGANLKGVSIELNGNNCLLEIGENCVIGENCFLSCRESGTKLVIGKECMFSRN
VKLMTSDGHDILRDGKRINPAKSIYIGSHVWLADNVTILKGVDIGSGSIIGINSTVTK
SIGQYCIAAGNPARKIKDNISWNTTLSY"
misc_feature complement(242674..243180)
/locus_tag="VC0238"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:30459"
misc_feature complement(242677..243003)
/locus_tag="VC0238"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature complement(order(242692..242694,242740..242742,
242797..242799,242806..242808,242812..242814,
242866..242874,242893..242895,242911..242913,
242917..242919,242956..242958,242980..242982,
242986..242988))
/locus_tag="VC0238"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature complement(order(242689..242691,242695..242700,
242725..242730,242743..242748,242782..242784,
242797..242802,242806..242808,242866..242868,
242872..242874,242974..242976,242980..242982))
/locus_tag="VC0238"
/note="active site"
/db_xref="CDD:100053"
misc_feature complement(order(242872..242874,242974..242976,
242980..242982))
/locus_tag="VC0238"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature complement(order(242677..242679,242689..242691,
242695..242700,242704..242706,242725..242730,
242743..242748,242752..242754,242782..242784,
242797..242802,242806..242808,242866..242868,
242872..242874))
/locus_tag="VC0238"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
gene complement(243212..244984)
/locus_tag="VC0239"
/db_xref="GeneID:2614707"
CDS complement(243212..244984)
/locus_tag="VC0239"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229896.1"
/db_xref="GI:15640269"
/db_xref="GeneID:2614707"
/translation="MNILMALSQLEVTGAEVYATSVGNELTRRGHQVFYVSDTLTKAH
DGLFFKLRFNKRSIPRRFWHVAYLVYLIKKHQIQLVHAHSRASSWSCHIACRLTNTPM
VTTVHGRQPVHVSRKKFHAMGDKALPVCEAIREQLIKDLNVPESQLHVSRNGIETSIF
KRSAAPNNPKPVISIIGRLSGPKGELCYRLLTECLDLDRYQVQVITGTPLTERFSALQ
DKVSFPGYSANVEQIMAQSDLVIGAGRVAMEALLCGRPTLAIGEASCVGIIELDNLNQ
AMATNFGDIGPHDLAIDFQQIPALIEQGLSQPHCTQEITEQIKLNYDLQVIVNELENL
YQTFYVNKLQREVPIIMYHRFIRDDSEKGVHGTYLHVQQLEKHFQLLKKMGFETLTFK
DLSEKGFIHRLQPGKRFIIITVDDGYRDNYDLLLPLLKKYQFKAVVYVVTGENFNRWD
VEVSDNPEKVVPLMSPEQVKALHDSGLVEIGGHTMTHPFLSKLSESEQREEILRNKLE
LEALIGEPLTSFAYPYGDHDATSKQLAQDLGYPFAVATNSGPLLMHQDPYQIRRIAIF
PRTDTFGLWRKVKGNYLFRKMNKK"
misc_feature complement(244013..244984)
/locus_tag="VC0239"
/note="This family is most closely related to the GT1
family of glycosyltransferases. WavL in Vibrio cholerae
has been shown to be involved in the biosynthesis of the
lipopolysaccharide core; Region: GT1_WavL_like; cd03819"
/db_xref="CDD:99989"
misc_feature complement(244502..244978)
/locus_tag="VC0239"
/note="Glycosyltransferase Family 4; Region:
Glyco_transf_4; pfam13439"
/db_xref="CDD:222130"
misc_feature complement(order(244235..244237,244295..244297,
244451..244459,244943..244945))
/locus_tag="VC0239"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99989"
misc_feature complement(<243353..243943)
/locus_tag="VC0239"
/note="Predicted xylanase/chitin deacetylase [Carbohydrate
transport and metabolism]; Region: CDA1; COG0726"
/db_xref="CDD:223798"
misc_feature complement(243281..243757)
/locus_tag="VC0239"
/note="Putative catalytic NodB homology domain of PgaB,
IcaB, and similar proteins which consist of a deformed
(beta/alpha)8 barrel fold with 5- or 6-strands; Region:
CE4_NodB_like_5s_6s; cd10918"
/db_xref="CDD:213023"
misc_feature complement(order(243410..243418,243524..243526,
243536..243538,243737..243742))
/locus_tag="VC0239"
/note="putative active site [active]"
/db_xref="CDD:213023"
misc_feature complement(order(243524..243526,243536..243538,
243737..243739))
/locus_tag="VC0239"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:213023"
gene complement(245143..246087)
/gene="rfaD"
/locus_tag="VC0240"
/db_xref="GeneID:2614708"
CDS complement(245143..246087)
/gene="rfaD"
/locus_tag="VC0240"
/EC_number="5.1.3.20"
/note="catalyzes the interconversion between
ADP-D-glycero-beta-D-manno-heptose and
ADP-L-glycero-beta-D-manno-heptose"
/codon_start=1
/transl_table=11
/product="ADP-L-glycero-D-manno-heptose-6-epimerase"
/protein_id="NP_229897.1"
/db_xref="GI:15640270"
/db_xref="GeneID:2614708"
/translation="MIIVTGGAGMIGSNIIKALNERGITDILVVDHLKNGRKFKNLVD
LQIADYMDRDDFLAQIMAGDDFGFIDAIFHEGACSATTEWDGKYVMLNNYEYSKELLH
YCLDREIPFLYASSAATYGETDTFIEEPQYEGALNVYGYSKQQFDNYVRRLWLDAKQH
DETLSQITGFRYFNVYGPREQHKGSMASVAFHLNNQMNAGENPKLFAGSENFKRDFVY
VGDVAAVNLWFLDHGVSGIFNCGTGKAESFNEVAKAVIAFHGRGEVETIPFPDHLKGA
YQEFTEADLTKLRAAGCDVQFKSVAEGVAEYMALINRK"
misc_feature complement(245149..246087)
/gene="rfaD"
/locus_tag="VC0240"
/note="ADP-L-glycero-D-mannoheptose 6-epimerase (GME),
extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248"
/db_xref="CDD:187559"
misc_feature complement(245149..246087)
/gene="rfaD"
/locus_tag="VC0240"
/note="ADP-L-glycero-D-mannoheptose-6-epimerase;
Provisional; Region: rfaD; PRK11150"
/db_xref="CDD:182998"
misc_feature complement(order(245539..245544,245563..245565,
245569..245574,245659..245661,245671..245673,
245740..245748,245800..245802,245812..245814,
245824..245826,245851..245853,245857..245865,
245929..245931,245974..245976,245992..246000,
246055..246063,246070..246075))
/gene="rfaD"
/locus_tag="VC0240"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187559"
misc_feature complement(order(245632..245634,245641..245646,
245653..245655,245665..245667,245674..245688,
245794..245796,245806..245808,245818..245820,
245827..245838,245932..245934,245938..245955,
245959..245964,245971..245973,245977..245982,
245986..245991))
/gene="rfaD"
/locus_tag="VC0240"
/note="homopentamer interface [polypeptide binding]; other
site"
/db_xref="CDD:187559"
misc_feature complement(order(245344..245346,245446..245448,
245512..245514,245521..245523,245527..245535,
245566..245568,245845..245847))
/gene="rfaD"
/locus_tag="VC0240"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187559"
misc_feature complement(order(245659..245661,245671..245673,
245740..245742,245809..245811))
/gene="rfaD"
/locus_tag="VC0240"
/note="active site"
/db_xref="CDD:187559"
gene 246640..247926
/locus_tag="VC0241"
/db_xref="GeneID:2614704"
CDS 246640..247926
/locus_tag="VC0241"
/note="similar to GB:X59554 SP:Q07024 PID:48383;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="mannose-1-phosphate guanylyltransferase"
/protein_id="NP_229898.2"
/db_xref="GI:471237031"
/db_xref="GeneID:2614704"
/translation="MLQATIERLQGLPIAEPIVISNEDHRFIVAEQIRRYGKKSRIIL
EPAGRNTAPAIALAAFTAIEQEDDPVLLVLAADHFVKNKSAFQAAISQAAQQAEAGKL
ATFGIVPTTPETGYGYIHRGEEVTQGTYEINSFVEKPQLNIAEQYLASGEYYWNSGCF
MFKASVFLNELKQHSPEIYRQCELAMQGLSHDYDFIRVGVEEFLKCPDDSIDYAVMEH
TKLGVVVSMDAGWSDVGSWSALWEVSDKDADGNVCQGDAILSGTSNCYIYAPNKLVAA
VGLKDIVVVETKDAVLVADKNQVQEVKKIVEHLKAENRAEYREHRERYRPWGKSDAID
KGERYKVNRITVEPGKKQSLQMHYHRAEHWVVVSGTAKVTCEGNVKVITENQSLYIPI
GTNHMIENPGKIPLELIEIQSGSYLNEDDVVRFEDK"
misc_feature 246640..247923
/locus_tag="VC0241"
/note="mannose-1-phosphate
guanylyltransferase/mannose-6-phosphate isomerase; Region:
GMP_PMI; TIGR01479"
/db_xref="CDD:233431"
misc_feature 246640..247359
/locus_tag="VC0241"
/note="GDP-M1P_Guanylyltransferase catalyzes the formation
of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase;
cd02509"
/db_xref="CDD:133003"
misc_feature 247468..247920
/locus_tag="VC0241"
/note="Mannose-6-phosphate isomerase; Region:
MannoseP_isomer; pfam01050"
/db_xref="CDD:144587"
gene 247929..249320
/locus_tag="VC0242"
/db_xref="GeneID:2614705"
CDS 247929..249320
/locus_tag="VC0242"
/note="similar to GB:X59554 SP:Q06951 PID:581822;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="phosphomannomutase"
/protein_id="NP_229899.1"
/db_xref="GI:15640272"
/db_xref="GeneID:2614705"
/translation="MKELTCFKAYDIRGQLGSELDNEIAYRIGRSYGQFLKSENDADK
TVVVGGDVRLTSEALKQALANGLMDAGINVIDIGVTGTEEIYFATFYLGVDGGIEVTA
SHNPMDYNGMKLVREGSKPISGDTGLREIQALAEKNEFMDVEVKGNYKKVSLLPEYVD
HLISYITPAKIKPMKLVINSGNGAAGHVIDELEKRFIELSIPLEIIKVHHEEDGNFPN
GIPNPLLPECRADTANAVKEHKADMGIAFDGDFDRCFLFDENGDFIEGYYIVGLLAEA
FLQKEQGAKIIHDPRLSWNTIDVVTKSGGVPVMSKTGHAFIKERMRKEDAIYGGEMSA
HHYFRDFGYCDSGMIPWLLITELLSLAPDISLSKLISAKRFLFPCSGEINFKVKQAKL
IMEQVYLHYYENSIHFSAIDGISLEFEGWRFNLRDSNTEPLLRLNVESKQNIALMNDK
VEELTKLIKKLDI"
misc_feature 247929..249308
/locus_tag="VC0242"
/note="phosphomannomutase CpsG; Provisional; Region:
PRK15414"
/db_xref="CDD:185312"
misc_feature 247944..249302
/locus_tag="VC0242"
/note="The phosphomannomutase/phosphoglucomutase (PMM/PGM)
bifunctional enzyme catalyzes the reversible conversion of
1-phospho to 6-phospho-sugars (e.g. between
mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a...;
Region: PMM_PGM; cd03089"
/db_xref="CDD:100091"
misc_feature order(247950..247952,247956..247958,247965..247967,
248235..248243,248265..248267,248670..248672,
248676..248678,248682..248687,248799..248801,
248862..248870,248919..248921,248925..248927,
248931..248933,249204..249206,249210..249218)
/locus_tag="VC0242"
/note="active site"
/db_xref="CDD:100091"
misc_feature order(247956..247958,247965..247967,248235..248237,
248685..248687,248799..248801,248862..248864,
248868..248870,248919..248921,248925..248927,
248931..248933,249204..249206,249210..249218)
/locus_tag="VC0242"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100091"
misc_feature order(248235..248237,248670..248672,248676..248678,
248682..248684)
/locus_tag="VC0242"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100091"
gene 249323..250444
/locus_tag="VC0243"
/db_xref="GeneID:2614706"
CDS 249323..250444
/locus_tag="VC0243"
/note="similar to GB:X59554 PID:48385; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="GDP-mannose 4,6-dehydratase"
/protein_id="NP_229900.1"
/db_xref="GI:15640273"
/db_xref="GeneID:2614706"
/translation="MNKKVALITGITGQDGSYLAEFLLEKGYEVHGIKRRSSLFNTQR
VDHLYKDPHEEDVNFKLHYGDLTDSSNLTRILAEVQPDEVYNLGAQSHVAVSFQSPEY
TADVDAIGTLRLLEAIRFLGLTKKTKFYQASTSELYGLVQEIPQKETTPFYPRSPYAV
AKMYAYWITINYRESYGIYACNGILFNHESPRRGETFVTRKITRGMANIAQGLEKCLF
MGNLDALRDWGHAKDYVKMQWMMLQQDEPRDFVIATGVQYSVREFIDMSARELGIELE
FVGKGVDEKAVVKSVIGTKAPAIKVGDIIVAVDPAYFRPAEVETLLGDPSLAKKELGW
VPEITLQQMVSEMVASDLEQAQSHALLKKHGYNVNVSVE"
misc_feature 249329..250396
/locus_tag="VC0243"
/note="GDP-D-mannose dehydratase [Cell envelope
biogenesis, outer membrane]; Region: Gmd; COG1089"
/db_xref="CDD:224014"
misc_feature 249335..250381
/locus_tag="VC0243"
/note="GDP-mannose 4,6 dehydratase, extended (e) SDRs;
Region: GDP_MD_SDR_e; cd05260"
/db_xref="CDD:187570"
misc_feature order(249350..249367,249425..249433,249512..249520,
249581..249589,249593..249595,249638..249640,
249716..249724,249794..249796,249806..249808,
249875..249889)
/locus_tag="VC0243"
/note="NADP-binding site; other site"
/db_xref="CDD:187570"
misc_feature order(249356..249361,249425..249442,249449..249454,
249509..249517,249521..249535,249539..249547,
249551..249553,249587..249598,249605..249607,
249611..249622,249632..249637,249647..249649,
249656..249661,249668..249670,249677..249682,
249773..249784,249788..249793,249800..249805,
249809..249814,249821..249826,249830..249838,
249842..249850,249908..249913,250265..250270)
/locus_tag="VC0243"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(249593..249601,249722..249730,249794..249796,
249881..249883,249908..249916,249923..249925,
249974..249985,249992..249994,249998..250000,
250100..250102,250256..250258,250262..250264,
250271..250276)
/locus_tag="VC0243"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(249611..249613,249620..249622,249632..249637,
249644..249649,249656..249661,249668..249670,
249773..249784,249788..249793,249800..249805,
249809..249814,249821..249826,249830..249838,
249842..249850,250265..250270)
/locus_tag="VC0243"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187570"
misc_feature order(249641..249643,249722..249724,249794..249796,
249806..249808)
/locus_tag="VC0243"
/note="active site"
/db_xref="CDD:187570"
gene 250455..251558
/locus_tag="VC0244"
/db_xref="GeneID:2614566"
CDS 250455..251558
/locus_tag="VC0244"
/note="similar to GB:X59554 PID:48386; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="perosamine synthase"
/protein_id="NP_229901.1"
/db_xref="GI:15640274"
/db_xref="GeneID:2614566"
/translation="MIPVYEPSLDGNERKYLNDCIDSGWVSSRGKYIDRFETEFAEFL
KVKHATTVSNGTVALHLAMSALGITQGDEVIVPTFTYVASVNTIVQCGALPVFAEIEG
ESLQVSVEDVKRKINKKTKAVMAVHIYGQACDIQSLRDLCDEHGLYLIEDCAEAIGTA
VNGKKVGTFGDVSTFSFFGNKTITSGEGGMVVSNSDIIIDKCLRLKNQGVVAGKRYWH
DLVAYNYRMTNLCAAIGVAQLERVDKIIKRKRDIAEIYRSELAGLPMQVHKESNGTFH
SYWLTSIILDQEFEVHRDGLMTFLENNDIESRPFFYPAHTLPMYEHLAEKTAFPLSNS
YSHRGINLPSWPGLCDDQVKEICNCIKNYFNCI"
misc_feature 250455..251555
/locus_tag="VC0244"
/note="Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall biogenesis
[Cell envelope biogenesis, outer membrane]; Region: WecE;
COG0399"
/db_xref="CDD:223476"
misc_feature 250491..251537
/locus_tag="VC0244"
/note="3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The members of this CD are involved in various
biosynthetic pathways for secondary...; Region: AHBA_syn;
cd00616"
/db_xref="CDD:99740"
misc_feature order(250617..250622,250908..250910,250917..250919,
250980..250982,250992..250997,251382..251384)
/locus_tag="VC0244"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99740"
misc_feature order(250617..250622,250692..250694,250908..250910,
250917..250919,250980..250982,250995..250997)
/locus_tag="VC0244"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99740"
misc_feature 250995..250997
/locus_tag="VC0244"
/note="catalytic residue [active]"
/db_xref="CDD:99740"
gene 251555..252946
/locus_tag="VC0245"
/db_xref="GeneID:2614567"
CDS 251555..252946
/locus_tag="VC0245"
/note="similar to GB:X59554 PID:48387; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="rfbG protein"
/protein_id="NP_229902.1"
/db_xref="GI:15640275"
/db_xref="GeneID:2614567"
/translation="MNVMTEKKKLVVWVPLPPNSSWRGEGIAQTIENIVRNISPERKI
EIVVSSKHAEMLVGLEKSNPNISVLTLGFRGKSTKKTIGYVSLNEVEKDSLWDLVIAK
LPIIPAIFRKVGMYVSQLEYLLSLYIYSHLQRRGRFSSNNCRVWLPTPIIPYTHLLGG
EKFVSFWDPFVFEYNKEFPLTAEYFVKKLSKHFSNASAIITQSRANKDYLETVMGIES
SKINVIYNGSPDYSEFKKQQSNLSFSEVWSKSEFSGASKKAAFEALVNHQLNFSVLWR
LLTKNKVSNRKIVLISTQNRPYKGFDQLFVLINELCLRRDNYDFIFTCNVPTKLKERY
PSLYERIHEVTRVDNYLHASLYLMSDIVLHPSNVEGGLGAYPQYEASSVGKPSLINTG
RHVNEMAEEGFDVDLLSSNFVNTKETVDKIEKLINSEEYMRQNIDAINRLKISWKESA
SNYENVFFGNENA"
misc_feature 251861..252925
/locus_tag="VC0245"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature <252131..>252235
/locus_tag="VC0245"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:214166"
misc_feature 252407..252868
/locus_tag="VC0245"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:214166"
gene 252918..253712
/locus_tag="VC0246"
/db_xref="GeneID:2614564"
CDS 252918..253712
/locus_tag="VC0246"
/note="similar to GB:X59554 PID:48388; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide/O-antigen transport protein"
/protein_id="NP_229903.1"
/db_xref="GI:15640276"
/db_xref="GeneID:2614564"
/translation="MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWL
SITMFVQILCIGLIWSLIWRMGVDDYLPYVGVGHIIYLFYTQTINESTGIFVADARVY
LNDRQPFMLSVGAHIYRNVLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFV
LFASYFCAVISTRFRDLIQLIGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLL
ELIRNPIIGIDVNPLAFVSLVAWTFIIGMVSYFSYKVLDKKVIFWV"
misc_feature 252924..253709
/locus_tag="VC0246"
/note="ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagG; COG1682"
/db_xref="CDD:224596"
gene 253651..254466
/locus_tag="VC0247"
/db_xref="GeneID:2614565"
CDS 253651..254466
/locus_tag="VC0247"
/note="similar to GB:X59554 PID:48389; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide/O-antigen transport protein"
/protein_id="NP_229904.1"
/db_xref="GI:15640277"
/db_xref="GeneID:2614565"
/translation="MVWSATSRTKYSIKKSFFGCSMIELSNVNLHYPVPGHFSHSLQT
TISSKIGGVLGSSSAKDKEMKYVHALRDINLKLEDSSRLGIIGHNGAGKTTLLRLLSQ
VYPPTSGKVTIEGKISALTDFTLGMDPNATGLKNIEFRLVFMGCTFKEAQQAVEEIVA
FSELGEFINLPVRTYSTGMFLRLAFAISTHFTPDILILDEVIGAGDETFREKALSRLE
SLIKKSRMVVLSSHDLNAIKQYCDQAIVMEKGEIVFNGTPQSCIDYYLNSVKK"
misc_feature 253708..254463
/locus_tag="VC0247"
/note="ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagH; COG1134"
/db_xref="CDD:31329"
misc_feature 253717..254418
/locus_tag="VC0247"
/note="ATP-binding cassette component of polysaccharide
transport system; Region: ABC_KpsT_Wzt; cd03220"
/db_xref="CDD:213187"
misc_feature 253909..253932
/locus_tag="VC0247"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213187"
misc_feature order(253918..253923,253927..253935,254137..254139,
254245..254250,254344..254346)
/locus_tag="VC0247"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213187"
misc_feature 254128..254139
/locus_tag="VC0247"
/note="Q-loop/lid; other site"
/db_xref="CDD:213187"
misc_feature 254173..254202
/locus_tag="VC0247"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213187"
misc_feature 254233..254250
/locus_tag="VC0247"
/note="Walker B; other site"
/db_xref="CDD:213187"
misc_feature 254257..254268
/locus_tag="VC0247"
/note="D-loop; other site"
/db_xref="CDD:213187"
misc_feature 254332..254352
/locus_tag="VC0247"
/note="H-loop/switch region; other site"
/db_xref="CDD:213187"
gene 254505..254747
/locus_tag="VC0248"
/db_xref="GeneID:2614276"
CDS 254505..254747
/locus_tag="VC0248"
/note="similar to GB:X59554 PID:48390; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="acyl carrier protein"
/protein_id="NP_229905.1"
/db_xref="GI:15640278"
/db_xref="GeneID:2614276"
/translation="MVYMSISEEKIINLIAGILEVEIGIINKELAVGDIPEWDSLAHM
RIIAALESDLGVVLDIEQVLEIEDVEDIIDAVINNE"
misc_feature 254514..>254678
/locus_tag="VC0248"
/note="Acyl carrier protein [Lipid metabolism / Secondary
metabolites biosynthesis, transport, and catabolism];
Region: AcpP; COG0236"
/db_xref="CDD:223314"
gene 254753..256168
/locus_tag="VC0249"
/db_xref="GeneID:2614277"
CDS 254753..256168
/locus_tag="VC0249"
/note="similar to GB:X59554 PID:48391; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="rfbL protein"
/protein_id="NP_229906.1"
/db_xref="GI:15640279"
/db_xref="GeneID:2614277"
/translation="MSVVERIFNHSESRPDCIAVYENDRTISYENLASDIKKTAAKLV
SLGVTSEDAVLVRSNNSYSFILLYFSIHYVGAKFVNVAPDSDVSYVSFIEDKVNPKLF
IEKSQDFIRNIDSYTFDNIFPPQARGIADIMFTSGTTGEPKGVLLSHKSLVLATEHII
SHVKNTNEDVELLLMPLSHSFAMARMRTSLFAGGAIVVGCSFKQLKSVFKAIEFYKVT
GLGLVPSAWSYITLMTKDLIRKYSEQLNFIEFGSAHFPFEDKKQVAEWFPNTNVVMHY
GLTEVSRATFIDFHNDDINAVGHRYRGADFKIIDNKGAEVIEGEEGEIVFKAPWMLDG
YFENSQLTSDCFVEGYFKTGDLGRVVGDYLFLTGRLKEIINVGGKKVSPDQVEKVLSE
ALGVQECACAALSDANMGEVVQAYIVVKSGWDCENVISNIKETINGQLPMHMRPKKYS
IVSALPKTVSGKVQRYKLSSE"
misc_feature 254753..256156
/locus_tag="VC0249"
/note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites biosynthesis,
transport, and catabolism]; Region: CaiC; COG0318"
/db_xref="CDD:223395"
misc_feature 254804..>255304
/locus_tag="VC0249"
/note="Adenylate forming domain, Class I; Region:
AFD_class_I; cl17068"
/db_xref="CDD:247692"
misc_feature 255137..256156
/locus_tag="VC0249"
/note="Adenylate forming domain, Class I; Region:
AFD_class_I; cl17068"
/db_xref="CDD:247692"
misc_feature order(255146..255148,255155..255172,255176..255181)
/locus_tag="VC0249"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213270"
misc_feature order(255146..255148,255155..255172,255176..255181)
/locus_tag="VC0249"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213270"
misc_feature order(255155..255157,255503..255508,255572..255589,
255815..255817,255848..255850,255857..255859,
255890..255892,256136..256138)
/locus_tag="VC0249"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213270"
misc_feature order(255155..255157,255275..255280,255419..255421,
255425..255430,255443..255445,255503..255508,
255572..255589,255815..255817,255848..255850,
255857..255859,255881..255892,256079..256081)
/locus_tag="VC0249"
/note="active site"
/db_xref="CDD:213270"
misc_feature order(255275..255277,255425..255430,255443..255445,
255503..255505,255881..255889,256061..256063,
256079..256081)
/locus_tag="VC0249"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:213270"
gene 256177..257301
/locus_tag="VC0250"
/db_xref="GeneID:2614278"
CDS 256177..257301
/locus_tag="VC0250"
/note="similar to GB:M26941 SP:P13604 PID:144714;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="iron-containing alcohol dehydrogenase"
/protein_id="NP_229907.1"
/db_xref="GI:15640280"
/db_xref="GeneID:2614278"
/translation="MLKLRFPLPVFRNAREIANGRNARMALKGLVANRAALIISPSFG
SSQYFEQVVRLINAQSVRVIERSWQGEPSVEELSGVIGELEDFKPDYILALGGGSIID
GAKLAWLFYECPTLESELLYRPFALPSLRGRAKFAAIPTTVGAGSEVSSAAVMLDSVT
NSKKAVVTHDFLPDLVILDPDLVSEVPPKVLKTTVADALSHAIEGYVSLIDNPLMNTF
AEQAVSIIYRYRHQFSNDNWSSEMLSELQQAAMFAGWVQNHCIVGLSHAIAHQLGTFN
IGHGLANGLLMPAVINFNYREHTAATKYEQLIYKSGLPNKEALLELFEVLVGEQKTDM
HFSEQQLTTIAENALLDPAAKSNPVRFTENDVKEIVKQCL"
misc_feature 256207..257298
/locus_tag="VC0250"
/note="Alcohol dehydrogenase, class IV [Energy production
and conversion]; Region: EutG; COG1454"
/db_xref="CDD:224371"
misc_feature 256207..257295
/locus_tag="VC0250"
/note="Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH); Region:
DHQ_Fe-ADH; cl02872"
/db_xref="CDD:243222"
misc_feature order(256294..256296,256465..256473,256480..256482,
256489..256491,256597..256602,256606..256608,
256663..256668,256720..256722,256744..256746,
256765..256767,256777..256779,256972..256974,
256984..256986,257011..257013)
/locus_tag="VC0250"
/note="active site"
/db_xref="CDD:173927"
misc_feature order(256294..256296,256465..256473,256597..256602,
256606..256608,256720..256722,257011..257013)
/locus_tag="VC0250"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:173927"
misc_feature order(256765..256767,256972..256974,257011..257013)
/locus_tag="VC0250"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173927"
gene 257292..259769
/locus_tag="VC0251"
/db_xref="GeneID:2614274"
CDS 257292..259769
/locus_tag="VC0251"
/note="similar to GB:X59554 PID:48393; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="acyl protein synthase/acyl-CoA reductase RfbN"
/protein_id="NP_229908.1"
/db_xref="GI:15640281"
/db_xref="GeneID:2614274"
/translation="MPVNNENLTSVLDARPFELSEEQKSPLFKANLLAELVHHYQCNE
MYRKFCQKNKFDPLVFDGEVADIPPIPVHIFKAIGHKLSSVSDDTIKAKLQSSATSGV
PSTILLDKVTARRQTRAMARVMQEVLGPKRRPFCIMDIDPTSPNATNLGARIAAVKGY
LNFASTSKYFIDADSPSAPLEFLEQKFVEHLNSLASEEPLIIFGFTFVLYHTVFKTLK
DKGISFQLPKGSQVIHIGGWKKLESEKVDKITFNRDIASVLGISPDDVVDIYGFTEQM
GLNYPDCKAGWKHIHAYSDVIIRDESNLEVCGPGKVGLLEFVSPLPHSYPGNVVLTDD
LGVIEESLCECGKAGKRFKVIGRAKKAEVRGCGDVMSEKLTKKPSYKPLSQQEERLTI
YHSPIFLDDTMSASQQLDQIFCSLKRKQKWLANQPLEAILGLINEARKSWSSTPELDP
YRHTGLNFLADWCEPNRLKNLLDSALNGQRAFLDNFLPRKDISHSSQKAMPRGIVSHW
LSGNVPLLGMFALVQSILSKNANILKVSASESQALPVLLATFKGLSYTTPGGYTIHGD
DLLGTLAVVYFDRHQTKIAEKFSANADVRIAWGGREAIESVSGLPKKYNSQDILFGPK
LSMMVVGSDALDSDKAIRKLIRRAATDSSVFDQFACASPHTIFVEKGGLITPKEFAEK
LASAMDKALVRLPTQVPDIGQANKIRSKIAEYAFIGEYWHDKHLRWTVLFDEGIELVE
PTYQRVITVKAVDNVFDVVDSVHEDIQTVGLAMNGEKRLRFANEIMLKGAMRCPDVGY
MTHFDSPWDGVVALDRMVRWVTLGGPL"
misc_feature 257292..258416
/locus_tag="VC0251"
/note="Acyl-protein synthetase, LuxE; Region: LuxE;
pfam04443"
/db_xref="CDD:113222"
misc_feature 258510..259748
/locus_tag="VC0251"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:245815"
misc_feature 258558..259745
/locus_tag="VC0251"
/note="Acyl-CoA reductase (LuxC); Region: LuxC; pfam05893"
/db_xref="CDD:218799"
misc_feature order(258813..258827,258846..258848,258891..258893,
258897..258902,259080..259091,259098..259100,
259107..259112,259152..259160,259269..259271,
259518..259520,259671..259673)
/locus_tag="VC0251"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143395"
misc_feature order(258825..258827,259152..259154,259260..259262,
259269..259271)
/locus_tag="VC0251"
/note="catalytic residues [active]"
/db_xref="CDD:143395"
gene 259839..260405
/locus_tag="VC0252"
/db_xref="GeneID:2614275"
CDS 259839..260405
/locus_tag="VC0252"
/note="similar to GB:X59554 PID:48394; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="NP_229909.1"
/db_xref="GI:15640282"
/db_xref="GeneID:2614275"
/translation="MSGNGYYSEDVLKQMGFSSLGKNVKISEKASLYGISRISIGSNV
RIDDYVTISAGVGGVEIGSHVHIGVYSSLIGAGKITLEDFVGVSGRVSIYSSSDDYTG
MAMSNPTVPEELTKVTSLPVLIKKHSILGAGCVVLPKVIVGEGVSVGALSLVNKSLDD
WHIYSGNPIQKFIRKARKPLELEKKLIL"
misc_feature 259839..260396
/locus_tag="VC0252"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:223188"
misc_feature 260010..260342
/locus_tag="VC0252"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature order(260028..260030,260034..260036,260058..260060,
260088..260090,260094..260096,260112..260114,
260130..260138,260217..260219,260223..260225,
260232..260234,260289..260291,260337..260339)
/locus_tag="VC0252"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature order(260034..260036,260040..260042,260130..260132,
260136..260138,260223..260225,260229..260234,
260247..260249,260283..260288,260301..260306,
260331..260336,260340..260342)
/locus_tag="VC0252"
/note="active site"
/db_xref="CDD:100053"
misc_feature order(260034..260036,260040..260042,260130..260132)
/locus_tag="VC0252"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature order(260130..260132,260136..260138,260223..260225,
260229..260234,260247..260249,260277..260279,
260283..260288,260301..260306,260325..260327,
260331..260336,260340..260342)
/locus_tag="VC0252"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
misc_feature 260555..260635
/note="similar to IS1004 transposase; similar to GB:X59554
PID:581823; identified by sequence similarity"
gene 260793..261920
/locus_tag="VC0254"
/note="'This region contains a gene with one or more
premature stops or frameshifts, and is not the result of a
sequencing artifact.'"
/pseudogene="unknown"
/db_xref="GeneID:2614182"
gene 262098..262319
/locus_tag="VC0255"
/db_xref="GeneID:2614183"
CDS 262098..262319
/locus_tag="VC0255"
/note="similar to GP:48424; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="rfbT-like protein"
/protein_id="NP_229911.1"
/db_xref="GI:15640284"
/db_xref="GeneID:2614183"
/translation="MKHLIKNYVQKLIKTELDAIQSKSVHDNRNFIYNGEFLILESEF
GWHCFPRVQLNHALSYKNPNCSGIVNLVT"
misc_feature 262098..>262289
/locus_tag="VC0255"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene 262326..262670
/locus_tag="VC0256"
/db_xref="GeneID:2614179"
CDS 262326..262670
/locus_tag="VC0256"
/note="similar to SP:P39213; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="transposase OrfAB subunit A"
/protein_id="NP_229912.1"
/db_xref="GI:15640285"
/db_xref="GeneID:2614179"
/translation="MISSPHKLTGDIMTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAA
QAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKA
TALLMSDSLNNS"
misc_feature 262362..262655
/locus_tag="VC0256"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG2963"
/db_xref="CDD:32783"
misc_feature 262368..262598
/locus_tag="VC0256"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 262667..263539
/locus_tag="VC0257"
/db_xref="GeneID:2614180"
CDS 262667..263539
/locus_tag="VC0257"
/note="similar to GP:3337013; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="transposase OrfAB subunit B"
/protein_id="NP_229913.1"
/db_xref="GI:15640286"
/db_xref="GeneID:2614180"
/translation="MIIKKLKQSHSVKILCEVFNVHRSSYHYWLKRPALINAETIKLR
SLISEAHAASNGSAGARTIADIVTNQGVKLSRYRATKLMRTLGLVSCQEPKHRYRKAS
QEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLS
PDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCW
DNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESE
RLYWENSKTVANFS"
misc_feature 262721..263518
/locus_tag="VC0257"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:222853"
misc_feature 262790..262966
/locus_tag="VC0257"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:222019"
misc_feature 263027..263368
/locus_tag="VC0257"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature 263282..263482
/locus_tag="VC0257"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
gene 263420..264219
/locus_tag="VC0258"
/pseudogene="unknown"
/db_xref="GeneID:2615260"
gene complement(264254..265366)
/locus_tag="VC0259"
/db_xref="GeneID:2615261"
CDS complement(264254..265366)
/locus_tag="VC0259"
/note="similar to GB:X59554 PID:48400 PID:1929424;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide biosynthesis protein RfbV"
/protein_id="NP_229915.2"
/db_xref="GI:471237032"
/db_xref="GeneID:2615261"
/translation="MKVLHVYRTCYPETKGGVEQVIRFIASGTKPLGIETKILTLSDN
QTSSYYCEGTEIISVKKSIEISSNGFSWKLIRQFKKLSKWADIIHYHYPWPTGDFLSL
FGSSNPSIVTYHSDIIRQKCLKKLYQPLESHFLNQANILVATSPQYAHTSENLLRHKN
KVKIIPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVLRYYKGLDFLLEAAKINQL
PVIIAGDGPERVKLESYIAKHNLENVKLVGFISEEDKVILHLLSKAFVFPSHLRSEAF
GISLIEAQMYCKAIISSDIGTGSSYVNINGETGLVVPPADSQSFSDAMLKIEHDTKLC
EKLGINARKRFEQEFTAHRYAQSYTKLYSELFGNVC"
misc_feature complement(264263..265366)
/locus_tag="VC0259"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
misc_feature complement(264302..265363)
/locus_tag="VC0259"
/note="This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can...; Region:
GT1_like_4; cd03795"
/db_xref="CDD:99969"
misc_feature complement(order(264530..264532,264602..264604,
264770..264778,265316..265318))
/locus_tag="VC0259"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99969"
gene complement(265374..267239)
/locus_tag="VC0260"
/db_xref="GeneID:2614878"
CDS complement(265374..267239)
/locus_tag="VC0260"
/note="similar to PID:1929425; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="mannosyltransferase"
/protein_id="NP_229916.1"
/db_xref="GI:15640289"
/db_xref="GeneID:2614878"
/translation="MFTPIQLLLSAQRHHKRMITLLYDVFALMFSLYAAIALRLDTLA
FTFSFPEFLSMMTTVGVTLYCFVRLGMYRAVLRYMMLPAIGYIFLSVIISAVTLALSG
FFFQAFIPRSVPFIYAGLATLTLGGPRIFIRTIYYHYYKRQKPNVFIYGAGSTGRDLA
YALIQGDEYHPVIFLDDDPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGK
NTRIKLLERLSHWPIEIQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQ
KNITEKSVMVTGAGGSIGSELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLK
LNTKIVAALGSVQRENRVKKLMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTL
ACANAAIEAGVKNFTLISTDKAVRPTNIMGASKRMAELVLQALADKNSTTIFTMVRFG
NVLGSSGSVVPLFKKQIRAGGPVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFV
LDMGEPVKIVDLAKRMIHLMGMKEFCDGRSDEGDIEIKFTGLRPGEKLYEELLIGENV
EGTSHQKIMTACEEKLSWDAMEDLLTELDVCCHNFDVECIKRILLDAPTGYSPQK"
misc_feature complement(265377..267185)
/locus_tag="VC0260"
/note="Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: COG1086"
/db_xref="CDD:224011"
misc_feature complement(<266556..266795)
/locus_tag="VC0260"
/note="Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes...; Region: LbetaH;
cl00160"
/db_xref="CDD:193687"
misc_feature complement(265515..266396)
/locus_tag="VC0260"
/note="UDP-Glcnac (UDP-linked N-acetylglucosamine)
inverting 4,6-dehydratase, extended (e) SDRs; Region:
UDP_invert_4-6DH_SDR_e; cd05237"
/db_xref="CDD:187548"
misc_feature complement(order(265872..265877,265884..265895,
265965..265967,266013..266015,266082..266084,
266127..266129,266133..266141,266202..266210,
266298..266303,266361..266372,266376..266378))
/locus_tag="VC0260"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187548"
misc_feature complement(order(265854..265856,265869..265874,
266085..266087,266094..266096,266103..266105,
266115..266117,266124..266135,266187..266189,
266196..266198,266205..266216,266268..266270,
266280..266282,266292..266294,266298..266300))
/locus_tag="VC0260"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187548"
misc_feature complement(order(265578..265580,265587..265589,
265689..265691,265794..265796,265800..265802,
265812..265820,265851..265856,265863..265871,
265887..265892,265977..265979,266001..266009,
266127..266129))
/locus_tag="VC0260"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187548"
misc_feature complement(order(265965..265967,265977..265979,
266007..266009,266079..266081))
/locus_tag="VC0260"
/note="active site"
/db_xref="CDD:187548"
gene 267392..268363
/locus_tag="VC0262"
/db_xref="GeneID:2614880"
CDS 267392..268363
/locus_tag="VC0262"
/note="similar to PID:1929426; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="UDP-glucose 4-epimerase"
/protein_id="NP_229918.1"
/db_xref="GI:15640291"
/db_xref="GeneID:2614880"
/translation="MEPDNQTPLKILVTGASGFVGLRVLTQAQNIGYALVAQSRSQQP
YSFEQVLLDITPNTDWERALVGVDCVVHCAARVHQMQETEADALKAYRDVNTQGTLNL
AKQAVSAGVKRFIFLSSIKVNGEQTKAGSAFQHDDQHIPSDPYGLSKYEAEQQLLELA
AETGLEVVIIRPPLVYGEGVKANFLSMMNWVKKQIPLPLGAVGNMRSLVYLDNLVDLI
LVCCQHPKAAGEIFLVSDNHDVSLTTLLRTIAQAMQIRPRLLPIPQTGLQWLLRLLGK
PELGQRLCGNLQLDIAHTQKTLHWSPPVSFEQGIARTVNFYLSQSSK"
misc_feature 267419..268360
/locus_tag="VC0262"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:223528"
misc_feature 267419..268330
/locus_tag="VC0262"
/note="UDP-glucose 4 epimerase, subgroup 4, extended (e)
SDRs; Region: UDP_G4E_4_SDR_e; cd05232"
/db_xref="CDD:187543"
misc_feature order(267434..267436,267440..267451,267506..267514,
267608..267616,267671..267673,267740..267748,
267824..267826,267836..267838,267905..267916)
/locus_tag="VC0262"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187543"
misc_feature order(267674..267676,267746..267748,267824..267826,
267836..267838)
/locus_tag="VC0262"
/note="active site"
/db_xref="CDD:187543"
misc_feature order(267746..267748,267824..267826,267911..267913,
267950..267952,267980..267982,268007..268009)
/locus_tag="VC0262"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187543"
gene 268371..268925
/locus_tag="VC0263"
/db_xref="GeneID:2614469"
CDS 268371..268925
/locus_tag="VC0263"
/note="similar to PID:1929427; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="galactosyl-transferase"
/protein_id="NP_229919.1"
/db_xref="GI:15640292"
/db_xref="GeneID:2614469"
/translation="MVIRFLDFIFALAGLLLLWPVLLIVCILGYFDTGSPIFCQQRVG
KNQRPFTLIKFRTMPKNTASVATHLVGASSVTRLGQFLRKTKLDELPQLINVLKGEMS
LVGPRPCLFNQQDLIAERESRGVFTVLPGITGLAQVNEVDMSTPVKLAELDQQMIQTL
NLKNYFTYIIQTVLGKGAGDRVKP"
misc_feature <268458..268892
/locus_tag="VC0263"
/note="Sugar transferases involved in lipopolysaccharide
synthesis [Cell envelope biogenesis, outer membrane];
Region: WcaJ; COG2148"
/db_xref="CDD:225059"
gene 269068..270435
/locus_tag="VC0264"
/db_xref="GeneID:2614470"
CDS 269068..270435
/locus_tag="VC0264"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229920.1"
/db_xref="GI:15640293"
/db_xref="GeneID:2614470"
/translation="MLRRANHGKVAQNRRNNMEVVHHGGKASVTGSCHELRADGQALL
IDCGLFQGADERPLAVEFALGHVDALILTHAHIDHIGRLPWLLAAGLKQPIYSTAATA
ELVPLMLEDGLKLQLGMSPKQSERVLTEVRRLLRVQDYQKWFAVQPKRADSLWVRFQP
AGHILGSAYVEIRRPNGEVVVFSGDLGPSHTPLLPDPQSPERADYLFIETTYGDKQHE
DVQSRGQRLRAMIERSLTDGGAILIPAFSVGRTQELLFDIEQLIFSQQIDANLPIILD
SPMAQRVTRSYRRFKQLWGREAKARLQMHRHPLAFEQCITVEDHRTHERLVNRLASTG
EAAIVVAASGMCQGGRIMDYLKALLPDKRTDLILAGFQAEGTLGRSIQSGQPSVWIEG
TEVEVNAHIHTMSGYSAHADKADLLRFITGIPEKPKQVHLIHGEAPAKQAFAAELTQL
GYSVL"
misc_feature 269119..270429
/locus_tag="VC0264"
/note="Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis]; Region: YSH1; COG1236"
/db_xref="CDD:31429"
misc_feature 269152..269637
/locus_tag="VC0264"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; pfam00753"
/db_xref="CDD:201425"
misc_feature 269818..270210
/locus_tag="VC0264"
/note="Beta-Casp domain; Region: Beta-Casp; smart01027"
/db_xref="CDD:198095"
misc_feature 270244..270381
/locus_tag="VC0264"
/note="RNA-metabolising metallo-beta-lactamase; Region:
RMMBL; pfam07521"
/db_xref="CDD:203663"
gene complement(270697..271935)
/locus_tag="VC0265"
/db_xref="GeneID:2614471"
CDS complement(270697..271935)
/locus_tag="VC0265"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229921.1"
/db_xref="GI:15640294"
/db_xref="GeneID:2614471"
/translation="MLETLTLWLQKFDIEIERVIQLAEALGLIAAISIAIHLVLHRGV
LLWLKRHTHHEQSVWRNALFKEHLFSRVALLIQGVVIAVQTQLWLSPNTFAYDVLHTL
TSLWIVVFGMLATYSVLNVLELLISRTQVGKNLPTRGILQSIKLIVFIIAALFFTSIL
IGKSPVILLSGLGAMTAVFMLVFKDPILGLVAGVQLSANKMLSVGDWLEMPKYGADGS
VIDISLTTVKVQNWDKTITTIPSYALISDSFKNWKGMQESGGRRIKRSILIDATSVHF
LTEEEKQALKKAQLLEPYLVEKEQEISSYNQQKHWDLACRINGRRLTNIGSFRAYLER
YLRTHPNIHQDMTLMVRQLAPTHDGISLEVYCFTSTTVWVEYERIQSDIFDHIYAVLP
EFDLRVSQAPTGNDFRALRG"
misc_feature complement(270730..271716)
/locus_tag="VC0265"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:223740"
misc_feature complement(270742..271506)
/locus_tag="VC0265"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene complement(271990..272562)
/locus_tag="VC0266"
/db_xref="GeneID:2614472"
CDS complement(271990..272562)
/locus_tag="VC0266"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229922.1"
/db_xref="GI:15640295"
/db_xref="GeneID:2614472"
/translation="MLESLLTEIRQCTVCEPHLPLGANPVIRAHPAAKILIIGQAPGT
KVHQTSIPWNDASGERLRQWLGLDREAFYCEENIAIMPMGLCYPGKGRSGDLPPRKEC
APLWHAKVLEQLPNRQLTLLIGQYAQHYYLSDKPSTLTETVQQWQRWAPSVLPLPHPS
PRNTLWLKNHPWFEQDIVPYLRQRVKQVLT"
misc_feature complement(271996..272508)
/locus_tag="VC0266"
/note="Uncharacterized subfamily of Uracil-DNA
glycosylases; Region: UDG_like_1; cd10033"
/db_xref="CDD:198431"
misc_feature complement(order(272089..272091,272317..272319,
272440..272448))
/locus_tag="VC0266"
/note="putative uracil binding site [chemical binding];
other site"
/db_xref="CDD:198431"
misc_feature complement(order(272083..272085,272089..272094,
272185..272193,272434..272436,272440..272445))
/locus_tag="VC0266"
/note="putative active site [active]"
/db_xref="CDD:198431"
gene complement(272562..273485)
/locus_tag="VC0267"
/db_xref="GeneID:2614473"
CDS complement(272562..273485)
/locus_tag="VC0267"
/note="similar to GB:Z11929 SP:P43169 PID:46871;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="D-isomer specific 2-hydroxyacid dehydrogenase
family protein"
/protein_id="NP_229923.1"
/db_xref="GI:15640296"
/db_xref="GeneID:2614473"
/translation="MNNFHQLYILTEHDEHYREQILERQLEGLALTEDRAKATILLAA
PPMAARRLDEFPRLQWLHSAYAGVDTLMDPKLRKNYLLTNVKGIFGHLIAEYVMGYAI
QYQRDFRLYQTQQAERLWQPRPYSSLANQTLVILGTGSIGSHLAHVAKQFGLRVVGVN
RTGIPAKEGHFDATYHISELPAALMRADLLVNTLPNTPATEGLLNQENLRHCHQALLF
NVGRGKTLVEQGLPDLIAAGHIRHAFLDVFIKEPLAQDHPFWDNPAITITPHIAAVSF
PEQVVDIFADNYQRWCDNLPLRNQIDFEKGY"
misc_feature complement(272565..273476)
/locus_tag="VC0267"
/note="Phosphoglycerate dehydrogenase and related
dehydrogenases [Amino acid transport and metabolism];
Region: SerA; COG0111"
/db_xref="CDD:223189"
misc_feature complement(272565..273473)
/locus_tag="VC0267"
/note="Putative D-isomer specific 2-hydroxyacid
dehydrogenase; Region: 2-Hacid_dh_1; cd05300"
/db_xref="CDD:240625"
misc_feature complement(order(272667..272672,272676..272678,
272745..272750,272820..272828,272886..272888,
272901..272909,273003..273011,273063..273077,
273207..273209,273219..273221,273288..273290))
/locus_tag="VC0267"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:240625"
misc_feature complement(order(272667..272669,272676..272678,
272823..272828,273063..273065,273219..273221,
273288..273290))
/locus_tag="VC0267"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:240625"
misc_feature complement(order(272676..272678,272733..272735,
272820..272822))
/locus_tag="VC0267"
/note="catalytic site [active]"
/db_xref="CDD:240625"
gene 273559..274146
/locus_tag="VC0268"
/db_xref="GeneID:2614474"
CDS 273559..274146
/locus_tag="VC0268"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229924.2"
/db_xref="GI:471237033"
/db_xref="GeneID:2614474"
/translation="MLQNPLQLRLEKFEPWQQITFMACLCERMYPNYAMFCEHTQFAE
ARIYRDILDSVWELMTVKNAKVNFEHQLEKLEELIPTSDAFDLYAVYPAIDACEGLAT
LLHGLLDRDDLAESMIKVSQISVQTVAQLEEAQTGEAITNDNQKENEAVCAEWDVQWA
IFRPLREAVERDIDLIKDLRKELREEGVSNIGVEL"
misc_feature 273559..274143
/locus_tag="VC0268"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3068"
/db_xref="CDD:225610"
gene 274509..275708
/locus_tag="VC0269"
/db_xref="GeneID:2614475"
CDS 274509..275708
/locus_tag="VC0269"
/note="similar to SP:P25081 GB:X57117 PID:48820;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="mannose-6-phosphate isomerase"
/protein_id="NP_229925.1"
/db_xref="GI:15640298"
/db_xref="GeneID:2614475"
/translation="MNTAIPAPFFIMHNVIQSYAWGSIDSINQLFDIPNPKGEPQAEV
WMGTHPNGCSYVEFSGEKIKLSTLIEQKKTDFLSIQTVEQFGELPYLFKILAANQALS
IQVHPSKAEAEEGFARENAQGILINATNRNYKDPNHKPELVYALTNYQAMNGFRPLSD
IISLFSALAIDEIASLLSHLKRNQNETGLEHFFTKLLSLCGEKKRRVLEQLLSYARSH
AKQPIFALIEELATQYPNDIGLFAPLMLHVLTLQPGEAMFLDARTPHAYLKGTALEIM
ANSDNVLRAGLTPKHIDVVELAKCTLFKEKSEATLLLTPIQQGDMLSFPVPVADFKFA
IFPRPQQANITVSSAEILLPIDCDATLVSPCGTVLTVHKGQSVFIPAYTEKYCLSAAG
RVARAYN"
misc_feature 274524..>274877
/locus_tag="VC0269"
/note="Alpha-Mannosidase Binding Domain of Atg19/34;
Region: ABD; cl15429"
/db_xref="CDD:246961"
misc_feature 274542..275705
/locus_tag="VC0269"
/note="mannose-6-phosphate isomerase; Provisional; Region:
PRK15131"
/db_xref="CDD:185085"
misc_feature <274977..275153
/locus_tag="VC0269"
/note="MgtE intracellular N domain; Region: MgtE_N;
cl15244"
/db_xref="CDD:246905"
misc_feature <275223..275660
/locus_tag="VC0269"
/note="Alpha-Mannosidase Binding Domain of Atg19/34;
Region: ABD; cl15429"
/db_xref="CDD:246961"
gene 275674..276654
/locus_tag="VC0270"
/db_xref="GeneID:2614476"
CDS 275674..276654
/locus_tag="VC0270"
/note="similar to SP:P23917 GB:X76979 PID:145329
PID:581151 GB:U00096; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="ROK family protein"
/protein_id="NP_229926.1"
/db_xref="GI:15640299"
/db_xref="GeneID:2614476"
/translation="MQQDVSREHTINNGSSMADHDEHPIEQKEFYMLIGLDIGGTKIE
ICVLDKQGSMLYRQRIATPDNYSQFVDCVCSLIVDAEQATQPVDSIGIGLPGAVSPVT
GLIKNANCTFLNGQDLSSDLQYRLGREVKLANDANCFALSEAIDGAGKESMVVFGAIL
GTGCGGSIVVNRQVLVGPNAICGEWGHNPLPGYHLEQDGAARYCYCGRQNCIERFISG
SGFQDSYQALTGECITASEIMKRYKQQEPEAIHCYTQLIDHMARSFAGLVNVLDPDII
VLGGGLSNIDELYRDLPTATARHVFSDSAQVHFAKAVFGDSSGIRGAAWL"
misc_feature 275767..276651
/locus_tag="VC0270"
/note="fructokinase; Reviewed; Region: PRK09557"
/db_xref="CDD:181951"
misc_feature 275773..>276183
/locus_tag="VC0270"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(275782..275793,275797..275799,275803..275805,
276076..276078,276148..276159)
/locus_tag="VC0270"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(277002..278060)
/locus_tag="VC0271"
/db_xref="GeneID:2614477"
CDS complement(277002..278060)
/locus_tag="VC0271"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229927.1"
/db_xref="GI:15640300"
/db_xref="GeneID:2614477"
/translation="MFLLAIYISVAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAA
NRLAGLKADIDRPLASILTLNTIAHTIGAATAGAQAAVVFGSQWLGLFSAVLTLGILV
LSEIVPKTIGATYWRELAPQASLVLRWMVWALTPFVWFSEQITKRLARKVEAPKLRDE
ISAMAMLANENGEFAEGESKMLNNLLAIQNVPVTQVMTPRPVLFRVSADLTIDEFIEQ
HRDTPFSRPLIYSEEKDNIVGFVHRLELFKEQQNGQGNLLLGDVMRPIHVVLNTLSLP
KAFDQMMQKRLQLSVVVDEYGSVQGLLTLEDIFEHLLGEEIIDEADRTTDMQQLATER
WEHWKRQHRMIESRDEVE"
misc_feature complement(277527..278054)
/locus_tag="VC0271"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:216595"
misc_feature complement(277134..277484)
/locus_tag="VC0271"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:223591"
misc_feature complement(277131..277460)
/locus_tag="VC0271"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:239963"
gene 278069..278233
/locus_tag="VC0272"
/db_xref="GeneID:2614478"
CDS 278069..278233
/locus_tag="VC0272"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229928.1"
/db_xref="GI:15640301"
/db_xref="GeneID:2614478"
/translation="MVLKCTFELFSSHNLRGKGRKAQGEYEEKSLRLKEPKVLFSVTK
SIEMTGFPVD"
gene 278432..278704
/locus_tag="VC0273"
/db_xref="GeneID:2614479"
CDS 278432..278704
/locus_tag="VC0273"
/note="similar to SP:P28080 PID:141878; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="DNA-binding protein HU"
/protein_id="NP_229929.1"
/db_xref="GI:15640302"
/db_xref="GeneID:2614479"
/translation="MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQL
IGFGTFKVNHRSARTGRNPKTGEEIKIAAANVPAFVAGKALKDAIK"
misc_feature 278435..278695
/locus_tag="VC0273"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature order(278435..278440,278447..278449,278456..278458,
278468..278470,278510..278512,278519..278524,
278531..278536,278546..278560,278567..278572,
278585..278587,278651..278656,278666..278668,
278672..278674,278693..278695)
/locus_tag="VC0273"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
misc_feature order(278435..278443,278507..278509,278552..278554,
278558..278560,278564..278569,278576..278578,
278588..278590,278594..278599,278603..278605,
278612..278623,278651..278653,278663..278665,
278669..278671,278678..278680)
/locus_tag="VC0273"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
gene 278705..279439
/locus_tag="VC0274"
/db_xref="GeneID:2614997"
CDS 278705..279439
/locus_tag="VC0274"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229930.1"
/db_xref="GI:15640303"
/db_xref="GeneID:2614997"
/translation="MLYTTPRLNISAFLFMKQQLSFLFLLSGLLAGCSSTPNPNLEQI
NQFTGGKTIGDATSFYWYTESFQKPSSASDYVTSGDYGSYQTSYRWEEGQVREIRREG
EHLDGKKLVPFRVHIRFSKEGEAVYQQYRLGGKVLPMNEEQLAHYVLQAKAVAEATKE
QDKQGLELIQGYWNGKTFETCQGVEYQRVEFNQSLPSFVFNRLASIESYVAFLGKIRN
GKVHIDELLLLDDAGHDCVKEPELLD"
misc_feature 278846..279427
/locus_tag="VC0274"
/note="Protein of unknown function (DUF1481); Region:
DUF1481; pfam07356"
/db_xref="CDD:148775"
gene complement(279539..280828)
/locus_tag="VC0275"
/db_xref="GeneID:2614998"
CDS complement(279539..280828)
/locus_tag="VC0275"
/EC_number="6.3.4.13"
/note="catalyzes the formation of
N(1)-(5-phospho-D-ribosyl)glycinamide from
5-phospho-D-ribosylamine and glycine in purine
biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylamine--glycine ligase"
/protein_id="NP_229931.1"
/db_xref="GI:15640304"
/db_xref="GeneID:2614998"
/translation="MQVLIIGSGGREHALAWKVAQNPQVDTIYVAPGNAGTALEHKVQ
NVNIGITDIPALVAFAQDKAIELTIVGPEAPLVIGVVDAFRAAGLPIFGPTQGAAQLE
GSKAFTKDFLARHNIPTAAYANFTEIEPALAYVREKGAPIVVKADGLAAGKGVIVAMT
LQEAEDAIQDMLAGNAFGSAGSRVVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRV
GDADTGPNTGGMGAYSPAPVVTQDVHDRVMREVIDPTVRGMAAEGNTYTGFLYAGLMI
DSTGAPKVIEYNCRFGDPETQPIMMRLQSDLVELCQAAIAGKLDQVESKWDPRASIGV
VLAAGGYPGDYAKGEVISGLPTQESAGQKVFHAGTETQGDQVVTNGGRVLCATALGNT
VLEAQQRAYQLADQIHWNGMFCRRDIGYRAIAREQAK"
misc_feature complement(279554..280828)
/locus_tag="VC0275"
/note="phosphoribosylamine--glycine ligase; Provisional;
Region: PRK00885"
/db_xref="CDD:234856"
misc_feature complement(280523..280828)
/locus_tag="VC0275"
/note="Phosphoribosylglycinamide synthetase, N domain;
Region: GARS_N; pfam02844"
/db_xref="CDD:217251"
misc_feature complement(279941..280522)
/locus_tag="VC0275"
/note="Phosphoribosylglycinamide synthetase, ATP-grasp (A)
domain; Region: GARS_A; pfam01071"
/db_xref="CDD:216282"
misc_feature complement(279560..279841)
/locus_tag="VC0275"
/note="Phosphoribosylglycinamide synthetase, C domain;
Region: GARS_C; pfam02843"
/db_xref="CDD:217250"
gene complement(280887..282479)
/gene="purH"
/locus_tag="VC0276"
/db_xref="GeneID:2614999"
CDS complement(280887..282479)
/gene="purH"
/locus_tag="VC0276"
/EC_number="2.1.2.3"
/EC_number="3.5.4.10"
/note="involved in de novo purine biosynthesis"
/codon_start=1
/transl_table=11
/product="bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase"
/protein_id="NP_229932.1"
/db_xref="GI:15640305"
/db_xref="GeneID:2614999"
/translation="MNNARPIHRALLSVSDKTGIVEFAKALAERGVELLSTGGTARLL
AEQGLTVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAVMNTHGIQPIDMVV
VNLYPFAQTVANPNCTLADAVENIDIGGPTMVRSAAKNHKDVAIVVNAHDYDRVIREM
DANHNSLTLATRFDLAIAAFEHTAAYDGMIANYFGTLVPSYGDNKEGDEESKFPRTFN
AQFIKKQDMRYGENSHQAAAFYVEANPQEASVATARQIQGKALSYNNIADTDAALECV
KEFSEPACVIVKHANPCGVALGDDLLQAYNRAYQTDPTSAFGGIIAFNRELDGETARA
IIERQFVEVIIAPKVSQAAIDIVAAKQNVRLLECGEWQGQTTGFDLKRVNGGLLVQDR
DQGMVAQDDLQVVSTRQPSDAELKDALFCWKVAKYVKSNAIVYAKGDMTIGIGAGQMS
RVYSAKIAGIKAADEGLEVAGSVMASDAFFPFRDGIDAAAEAGITCVIQPGGSMRDQE
VIDAANEHGMAMIFTGMRHFRH"
misc_feature complement(280890..282467)
/gene="purH"
/locus_tag="VC0276"
/note="bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional; Region:
purH; PRK00881"
/db_xref="CDD:234854"
misc_feature complement(281898..282455)
/gene="purH"
/locus_tag="VC0276"
/note="Inosine monophosphate cyclohydrolase domain. This
is the N-terminal domain in the purine biosynthesis
pathway protein ATIC (purH). The bifunctional ATIC protein
contains a C-terminal ATIC formylase domain that
formylates...; Region: IMPCH; cd01421"
/db_xref="CDD:238709"
misc_feature complement(order(282099..282101,282168..282170,
282270..282275,282360..282362,282369..282371,
282429..282431,282435..282437))
/gene="purH"
/locus_tag="VC0276"
/note="purine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:238709"
misc_feature complement(order(281898..281900,281907..281912,
281916..281924,281946..281954,281961..281963,
282063..282065,282072..282077,282087..282089,
282096..282104,282240..282242,282249..282254,
282261..282269,282276..282281,282288..282293,
282300..282302))
/gene="purH"
/locus_tag="VC0276"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238709"
misc_feature complement(order(282099..282101,282273..282275))
/gene="purH"
/locus_tag="VC0276"
/note="putative catalytic residues [active]"
/db_xref="CDD:238709"
misc_feature complement(281094..282071)
/gene="purH"
/locus_tag="VC0276"
/note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
smart00798"
/db_xref="CDD:214822"
misc_feature complement(280890..>281195)
/gene="purH"
/locus_tag="VC0276"
/note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
cl03362"
/db_xref="CDD:243400"
gene 282765..283166
/gene="zntR"
/locus_tag="VC0277"
/db_xref="GeneID:2615000"
CDS 282765..283166
/gene="zntR"
/locus_tag="VC0277"
/note="mediates expression of the zinc export protein ZntA
in response to high levels of zinc; member of MerR family
of transcriptional regulators"
/codon_start=1
/transl_table=11
/product="zinc-responsive transcriptional regulator"
/protein_id="NP_229933.1"
/db_xref="GI:15640306"
/db_xref="GeneID:2615000"
/translation="MMFQIGELAKRCGVSTDTLRFYEKNELIAPATRTESGYRLYDEK
SQQQVTFILKAKELGLSLEEIKELLEIRLEATEHSCAEVKAITSAKLAVIDQKIEELT
RIRSALKKINDACCGHVEDNASHCSILAALE"
misc_feature 282768..283163
/gene="zntR"
/locus_tag="VC0277"
/note="zinc-responsive transcriptional regulator;
Provisional; Region: zntR; PRK09514"
/db_xref="CDD:181924"
misc_feature 282771..283151
/gene="zntR"
/locus_tag="VC0277"
/note="Helix-Turn-Helix DNA binding domain of Heavy Metal
Resistance transcription regulators; Region: HTH_HMRTR;
cd04770"
/db_xref="CDD:133398"
misc_feature order(282774..282782,282822..282824,282873..282881)
/gene="zntR"
/locus_tag="VC0277"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133398"
misc_feature order(282915..282917,282924..282926,282936..282941,
282966..282968,283002..283007,283014..283016,
283023..283025,283035..283037,283053..283055,
283065..283067,283074..283079,283098..283100,
283113..283115,283125..283127,283140..283142,
283146..283148)
/gene="zntR"
/locus_tag="VC0277"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133398"
misc_feature order(283002..283004,283107..283109,283140..283142)
/gene="zntR"
/locus_tag="VC0277"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:133398"
gene 283393..284952
/locus_tag="VC0278"
/db_xref="GeneID:2615001"
CDS 283393..284952
/locus_tag="VC0278"
/note="regulates the cadBA operon"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional activator CadC"
/protein_id="NP_229934.2"
/db_xref="GI:471237034"
/db_xref="GeneID:2615001"
/translation="MIGICFQINDWVLCIDENKLYRQDREVSAEPRLINLLHFLAEHA
GEVFGREELIQHVWDGAIVTDQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVA
NVQRLDGNPYVSRQEESTASDVCLADDIDDVEDAVPEIVFPAGPLTRAVCQSQQPKKS
SKPNVSRWRLNLLNAIWIGLVIVAMGFFTVQQSQVRITQVVDTHLIEFKFQDGFHAQA
LTHELADGIAQKLMADLTQVSDYRVILGKTAYSSGILPGKSIMVRVNDQDGHEFLDLE
LKNNSSDAVLFSRQYPLDSQHLASVLKSAEWDVMQALKIPNAEQQAQRLLVDFPRQPA
ALGLYVRANHYLNVADRPQFQKGIYLLEQVLKLEPDNHYVQAELLIAYHVQQAISPDQ
ALNQDRMLVLSEQLQQVSYSPQAVVQPRIYEALALQATVENQVETATHYLAQAQGLRE
SVLSYVLQGKHAELKGDLDGASDAYSEAFYMDTSLETYLLCENLVFHSNLKSIDYAMY
RSVHPSVVRLL"
misc_feature 283393..284940
/locus_tag="VC0278"
/note="DNA-binding transcriptional activator CadC;
Provisional; Region: PRK10153"
/db_xref="CDD:236658"
misc_feature 283408..283692
/locus_tag="VC0278"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(283480..283482,283537..283542,283591..283593,
283600..283602,283624..283629,283666..283668,
283681..283683)
/locus_tag="VC0278"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene 285652..286989
/gene="cadB"
/locus_tag="VC0280"
/db_xref="GeneID:2615003"
CDS 285652..286989
/gene="cadB"
/locus_tag="VC0280"
/note="antiporter protein responsible for lysine import
and cadaverine export; member of the lysine-dependent acid
resistance system 4 (AR4); inner membrane protein"
/codon_start=1
/transl_table=11
/product="lysine/cadaverine antiporter"
/protein_id="NP_229936.1"
/db_xref="GI:15640309"
/db_xref="GeneID:2615003"
/translation="MSSNAKKIGLIACTGVVAGNMMGSGIALLPSTLASVGSISIYSW
LICIVGALSLAFVFARLATKNPQEGGPIAYAGEVSPVFGFQTGVLYYHANWIGNLAIA
ITGVSYLSVFFPVLNNPIPAGLATIASVWLFTLVNLLGGSWVSRLCTIGLVLILIPVV
GTALFGWTHFDSALYSQNWNVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPK
RTVPLATMLGTGLAGLIYVLSTQMISGMFPASEVAASGAPFALATTALFGSWTAPFVS
AFTALACFTSLGSWMMLVGEAGKRAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLL
MLVLMFFSSETAHASDLFNQLTTDAVLLTMLPYFYSSINLIRFEGMTTRNTFVMLFSG
IASLFCMVALAGAEGSTLTATFIMSLIILMFYSKKAGLDKYLETHPQQASAQF"
misc_feature 285655..286959
/gene="cadB"
/locus_tag="VC0280"
/note="lysine/cadaverine antiporter; Provisional; Region:
cadB; PRK10435"
/db_xref="CDD:182458"
gene 287033..289234
/locus_tag="VC0281"
/db_xref="GeneID:2615004"
CDS 287033..289234
/locus_tag="VC0281"
/note="similar to SP:P23892 GB:M67452 GB:M76411 PID:145454
PID:145458; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="lysine decarboxylase, inducible"
/protein_id="NP_229937.1"
/db_xref="GI:15640310"
/db_xref="GeneID:2615004"
/translation="MALVLLTVQCTESAFFRLGDVQMNIFAILNHMGVFFKEEPVRQL
HAALEKAGYDVVYPVDDKDLIKMIEMNPRICGVLFDWDKYSLELCERISKVNEKLPVH
AFANEQSTLDISLTDLRLNVHFFEYALGMADDIAIKINQATQEYKDAIMPPFTKALFK
YVEEGKYTFCTPGHMGGTAFQKSPVGSIFYDFYGPNTFKADVSISMPELGSLLDHSGP
HKEAEEYIARTFNADASYIVTNGTSTSNKIVGMFSAPAGSTVLVDRNCHKSLTHLMMM
TDVTPIYFRPTRNAYGILGGIPQNEFSREVIAEKVANTPGASAPSYAVITNSTYDGLL
YNTQFIKESLDCKHIHFDSAWVPYTNFNRIYEGKCGMSGEAMPGKVFYETQSTHKLLA
AFSQASMIHVKGEFDRESFNEAFMMHTSTSPQYGIVASTETAAAMMRGNTGRKLMQDS
IDRAIRFRKEIKRLKGESEGWFFDVWQPENIETTECWKLDPNQDWHGFKNLDDNHMYL
DPIKITLLTPGMSKDGELEQSGIPASLVSKYLDEHGIVVEKTGPYNLLFLFSIGIDKS
KAMQLLRGLTEFKRGYDLNLTIRTMLPSLYREDPVFYEGMRIQELAQGIHDLTRKYQL
PELMYKAFDVLPEMKVTPHVAWQQELRGQTEEILLNEMVGRVSANMILPYPPGVPLVL
PGEMVTDSSRPVLDFLEMLCEIGAHYPGFETDIHGLYRQKDGSYTVKVLKD"
misc_feature 287099..289231
/locus_tag="VC0281"
/note="lysine decarboxylase CadA; Provisional; Region:
PRK15400"
/db_xref="CDD:185298"
misc_feature 287138..287470
/locus_tag="VC0281"
/note="Orn/Lys/Arg decarboxylase, N-terminal domain;
Region: OKR_DC_1_N; pfam03709"
/db_xref="CDD:146376"
misc_feature 287489..288421
/locus_tag="VC0281"
/note="Ornithine decarboxylase family. This family belongs
to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups in
this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine...; Region:
Orn_deC_like; cd00615"
/db_xref="CDD:99739"
misc_feature order(287633..287635,287648..287650,287672..287674,
287747..287755,287759..287764,287771..287773,
287783..287791,287795..287800,287831..287836,
288194..288199,288206..288220,288269..288274,
288278..288286,288290..288292,288311..288313,
288320..288322,288329..288331,288368..288373)
/locus_tag="VC0281"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99739"
misc_feature order(287753..287761,287831..287833,287837..287839,
288008..288010,288086..288088,288092..288097,
288188..288190,288194..288199)
/locus_tag="VC0281"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99739"
misc_feature 288197..288199
/locus_tag="VC0281"
/note="catalytic residue [active]"
/db_xref="CDD:99739"
misc_feature 288806..289210
/locus_tag="VC0281"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene complement(289352..291022)
/locus_tag="VC0282"
/db_xref="GeneID:2615005"
CDS complement(289352..291022)
/locus_tag="VC0282"
/note="similar to PID:1066850; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="NP_229938.1"
/db_xref="GI:15640311"
/db_xref="GeneID:2615005"
/translation="MRVISQGVMFMTSVSLRHLSIRNRLFLLTVVILVLLAIPFAIMV
KDYRHDLMLEKQVQTQHLVESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGA
NDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQW
PKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVNALVMQRLSSILVWVVGTLLVLIV
LASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRH
IIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSA
HQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEV
IRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQ
KKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEA
TDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI"
misc_feature complement(290597..290881)
/locus_tag="VC0282"
/note="Cache domain; Region: Cache_2; pfam08269"
/db_xref="CDD:149365"
misc_feature complement(290195..290344)
/locus_tag="VC0282"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(290201..290206,290213..290218,
290222..290227,290234..290239,290243..290248,
290300..290302,290306..290311,290318..290323,
290327..290332,290339..290344))
/locus_tag="VC0282"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(289358..290143)
/locus_tag="VC0282"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(289463..289972)
/locus_tag="VC0282"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(289466..289471,289478..289480,
289487..289492,289499..289501,289508..289513,
289517..289522,289529..289534,289538..289543,
289550..289552,289559..289564,289571..289573,
289580..289585,289592..289597,289601..289606,
289613..289615,289622..289627,289634..289636,
289643..289648,289685..289690,289697..289702,
289706..289711,289718..289723,289730..289732,
289739..289744,289751..289753,289760..289762,
289772..289774,289793..289795,289802..289804,
289814..289816,289823..289828,289835..289837,
289844..289846,289853..289858,289865..289870,
289877..289879,289886..289891,289895..289897,
289907..289912,289916..289921,289928..289930,
289937..289942,289949..289954,289961..289963,
289970..289972))
/locus_tag="VC0282"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(289727..289828)
/locus_tag="VC0282"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(291257..291934)
/locus_tag="VC0283"
/db_xref="GeneID:2615006"
CDS complement(291257..291934)
/locus_tag="VC0283"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229939.1"
/db_xref="GI:15640312"
/db_xref="GeneID:2615006"
/translation="MQRQVKGDNHRRAGLTASLIMQRRRLPLHNNKWIRRLHAWCGFF
TLLLMLLYGLTGLWLSHRAVWPLPGPHTSKSEWQLSLTEPIDSVSTFQAQLNTEYGEH
EWTIREIAAQQLPTPQQPLLIPARWEARATSVTDTFSAQYVPGTLVIQAQHQKANWAA
VLNRLHRGMGTGLGWQLFSDLAAVAMLLLALTSLLMWTKLHGSPKRAGWLLIGGSVAT
TLFAIFG"
misc_feature complement(291260..291925)
/locus_tag="VC0283"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3295"
/db_xref="CDD:225832"
gene complement(291955..293997)
/locus_tag="VC0284"
/note="'This region contains an authentic point mutation,
causing a premature stop, and is not the result of a
sequencing artifact.'"
/db_xref="GeneID:2615007"
gene complement(294219..294824)
/locus_tag="VC0285"
/db_xref="GeneID:2615008"
CDS complement(294219..294824)
/locus_tag="VC0285"
/EC_number="4.1.2.14"
/EC_number="4.1.3.16"
/note="catalyzes the formation of pyruvate and glyoxylate
from 4-hydroxy-2-oxoglutarate; or pyruvate and
D-glyceraldehyde 3-phosphate from
2-dehydro-3-deoxy-D-glyconate 6-phosphate"
/codon_start=1
/transl_table=11
/product="keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase"
/protein_id="NP_229940.1"
/db_xref="GI:15640313"
/db_xref="GeneID:2615008"
/translation="MTIEQRLRAIKIVPVIAINDVAHALPLAKVLVENGLPCAEVTFR
TAAAAESIRIMRKAYPDLLIGAGTVLTTAQVDEAIAAGADFIVSPGLNPTTVKYCQQR
NIAIIPGVNNPSLVEQAMEMGLRTLKFFPAEPSGGIAMLKALSAVYPVSFMPTGGINP
NNAQEYLALKSVVACGGTWMVPTDLMDKGDWDTLAELVRNV"
misc_feature complement(294222..294824)
/locus_tag="VC0285"
/note="keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional; Region: PRK05718"
/db_xref="CDD:235577"
misc_feature complement(294234..294806)
/locus_tag="VC0285"
/note="KDPG and KHG aldolase; Region: KDPG_aldolase;
cd00452"
/db_xref="CDD:188632"
misc_feature complement(order(294360..294362,294435..294437,
294441..294443,294621..294623,294693..294695,
294705..294707,294780..294782))
/locus_tag="VC0285"
/note="active site"
/db_xref="CDD:188632"
misc_feature complement(order(294381..294386,294396..294398,
294432..294437,294462..294464,294474..294476,
294480..294491,294549..294560,294615..294617,
294621..294623,294693..294695))
/locus_tag="VC0285"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:188632"
misc_feature complement(294441..294443)
/locus_tag="VC0285"
/note="catalytic residue [active]"
/db_xref="CDD:188632"
gene complement(294837..296213)
/locus_tag="VC0286"
/db_xref="GeneID:2615009"
CDS complement(294837..296213)
/locus_tag="VC0286"
/note="similar to PID:882633 GB:U00096 PID:1789097;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="gluconate permease"
/protein_id="NP_229941.1"
/db_xref="GI:15640314"
/db_xref="GeneID:2615009"
/translation="MDPLLQTSDPTYLLTVAAVAIIALLLLIIRFKIHAFASLTLVSL
GTAIATGVASDKVVSTMMTGFGGTLASVALLVGLGAMIGKILEVTGGAKVLADTLIGR
FGEQRAPFALGVASLLFGFPIFFDAGLIVMMPIIFSVAKRFGGSPLKYALPSAGAFAV
MHAFVPPHPGPVAAAELLGANIGLLLIVGLLVAIPTWYLGAYLFGLYAGKKFDIPLSK
AFFNTDAIIDEAKLPKFATVMTILVLPVLLIFMDTGLNTLAVAGMIDGKAPAVEFLRM
LGKTPIALLITLLVCIAAFAKDYGMARLEKLCGDSLAPICAVILVTGAGGMFGGVLRA
SGIGSALAGVLSDTGMPVVVAAFVIATCLRVAQGSATVALTTTAALIAPTVAATTGLS
DLDLCFIVISIAGGATVLSHFNDSGFWLVSRLMEMDEKTTLKTWTVMETLLGGIAFLI
VATLSFIL"
misc_feature complement(294840..296126)
/locus_tag="VC0286"
/note="H+/gluconate symporter and related permeases
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism]; Region: GntT; COG2610"
/db_xref="CDD:225330"
misc_feature complement(294840..296126)
/locus_tag="VC0286"
/note="fructuronate transporter; Provisional; Region:
PRK10034; cl15264"
/db_xref="CDD:246912"
gene 296367..296882
/locus_tag="VC0287"
/db_xref="GeneID:2615010"
CDS 296367..296882
/locus_tag="VC0287"
/note="similar to SP:P46859 PID:606372 GB:U00096
PID:1304070 PID:1789845; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="thermoresistant gluconokinase"
/protein_id="NP_229942.1"
/db_xref="GI:15640315"
/db_xref="GeneID:2615010"
/translation="MAGSSIIVMGVCACGKSTIGELLAKQTGRKFIDGDDLHPRANIQ
KMASGQPLNDEDRKPWLERIRDAAYSLESKNEHGVIVCSALKKQYRDQIREGNQNVTF
LFLDGSKELIMERMRARQGHFMKENMVNSQFETLERPDGEPQTLIIPIDCSVQEVVSC
AIQALQEQEGL"
misc_feature 296379..296864
/locus_tag="VC0287"
/note="Shikimate kinase [Amino acid transport and
metabolism]; Region: AroK; COG0703"
/db_xref="CDD:223775"
misc_feature 296382..296819
/locus_tag="VC0287"
/note="Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits; Region: GntK; cd02021"
/db_xref="CDD:238979"
misc_feature order(296394..296417,296463..296465,296469..296471,
296709..296711,296721..296723)
/locus_tag="VC0287"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238979"
misc_feature order(296400..296405,296721..296723)
/locus_tag="VC0287"
/note="Gluconate-6-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:238979"
gene 296879..298675
/locus_tag="VC0288"
/db_xref="GeneID:2615011"
CDS 296879..298675
/locus_tag="VC0288"
/EC_number="4.2.1.12"
/note="catalyzes the formation of
2-dehydro-3-deoxy-6-phospho-D-gluconate from
6-phospho-D-gluconate"
/codon_start=1
/transl_table=11
/product="phosphogluconate dehydratase"
/protein_id="NP_229943.2"
/db_xref="GI:161582030"
/db_xref="GeneID:2615011"
/translation="MIHPILAKVTQNLTERSREARAAFIARSQAQEKAGKGRTSLSCG
NLAHAVAASCSTEKKAILDFTRSNVAIVTSYNDMLSAHQPYQHYPDRIKMVLAEYGHT
AQVAGGVPAMCDGVTQGQPGMDMSLFSRDLIAQATALSLSHNVFDATLLLGICDKIAP
GQLMGALSYAHLPTAFMPAGLMATGISNEEKVDIRQKYAAGEVGKDALLNMECQAYHA
PGTCTFYGTANTNQLVFEAMGLMLPGSAFVHPHSALRQALNDDATVKIASMTQGSAQY
RPLYQVVTEKSLLNGIVALLASGGSTNHTIHMLAVARAAGILLTWQDISDLSDVVPLL
AKVYPNGPADMNAFQQAGGVPALMKRLHESKLLHSDVTPVFGEFRDQLTLPELVDGEL
CWKACEGTRDAQVIAASGECFQTTGGTKMLNGNLGRAVIKVSAVKEEQRIIEAPAVVF
QCQHQVEAAYQRGELNKDCIVVVTHNGPAANGMPELHKLMPILGNVQKAGFKVALVTD
GRLSGASGKIPSAIHVSPEAVRGGAIGLVRDGDLLRLDCTTGTLENLTDMSHRQALAL
DTERDQQMWGRELFKVMRQAVSSAEQGASFIV"
misc_feature 296882..298669
/locus_tag="VC0288"
/note="phosphogluconate dehydratase; Validated; Region:
PRK09054"
/db_xref="CDD:181628"
misc_feature 296885..298663
/locus_tag="VC0288"
/note="6-phosphogluconate dehydratase; Region: edd;
TIGR01196"
/db_xref="CDD:130264"
gene complement(298752..299750)
/locus_tag="VC0289"
/db_xref="GeneID:2615012"
CDS complement(298752..299750)
/locus_tag="VC0289"
/note="similar to PID:1304069; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="gluconate utilization system gnt-I
transcriptional repressor"
/protein_id="NP_229944.1"
/db_xref="GI:15640317"
/db_xref="GeneID:2615012"
/translation="MTKKQRATLQDVADQVGVTKMTVSRYLRSPDSVAAATREKIALA
VEALGYIENRAPAMLSKSSSKAIGILLPSLSNQIFASFVQGIEAVTKANGYETLLAHF
GYDEEEEERKIASLLAYQVDGLILTESHHTQRTLQMIASSGVPVVETMELPANPIDMA
VGMDHVEASYQAVKKIIAAGKRSIAYFGARLDTRTKLRMQGYDQAMQEAGLPIKHVLT
GSHSSFSLAAQLLDEAFARYPDLDGVFCTNDDIAIGTLLVAQQRGIRVPEQLSVIGYN
ALDIGRTITPKLTSVDSPRYAIGEKSAELLIAALKGERAEQQVVDMGYRFTAGESV"
misc_feature complement(298755..299744)
/locus_tag="VC0289"
/note="gluconate operon transcriptional regulator;
Provisional; Region: PRK14987"
/db_xref="CDD:184949"
misc_feature complement(299568..299723)
/locus_tag="VC0289"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature complement(order(299571..299576,299580..299585,
299592..299594,299601..299603,299640..299642,
299649..299654,299667..299669,299676..299681,
299685..299699,299721..299723))
/locus_tag="VC0289"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature complement(299574..299603)
/locus_tag="VC0289"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature complement(298758..299552)
/locus_tag="VC0289"
/note="Ligand-binding domain of DNA transcription
repressor GntR specific for gluconate, a member of the
LacI-GalR family of bacterial transcription regulators;
Region: PBP1_GntR; cd01575"
/db_xref="CDD:107260"
misc_feature complement(order(298872..298874,298923..298925,
299085..299087,299157..299159,299262..299264,
299301..299303,299370..299372,299505..299507,
299514..299519))
/locus_tag="VC0289"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107260"
misc_feature complement(order(298968..298973,298980..298982,
298992..298994,299076..299078,299391..299399,
299406..299408,299415..299417,299448..299450,
299454..299468,299487..299492,299496..299501,
299508..299516))
/locus_tag="VC0289"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:107260"
gene complement(299889..300185)
/gene="fis"
/locus_tag="VC0290"
/db_xref="GeneID:2615013"
CDS complement(299889..300185)
/gene="fis"
/locus_tag="VC0290"
/note="Stimulates excision of phage lambda; affects Mu
development; acts as an activator of rRNA and iRNA
transcription"
/codon_start=1
/transl_table=11
/product="Fis family transcriptional regulator"
/protein_id="NP_229945.1"
/db_xref="GI:15640318"
/db_xref="GeneID:2615013"
/translation="MFEQNLTSEALTVTTVTSQDQITQKPLRDSVKASLKNYLAQLNG
QEVTELYELVLAEVEQPLLDTIMQYTRGNQTRAATMMGINRGTLRKKLKKYGMN"
misc_feature complement(299892..300185)
/gene="fis"
/locus_tag="VC0290"
/note="Factor for inversion stimulation Fis,
transcriptional activator [Transcription / DNA
replication, recombination, and repair]; Region: Fis;
COG2901"
/db_xref="CDD:225454"
misc_feature complement(299892..300176)
/gene="fis"
/locus_tag="VC0290"
/note="global DNA-binding transcriptional dual regulator
Fis; Provisional; Region: fis; PRK00430"
/db_xref="CDD:179020"
gene complement(300209..301204)
/locus_tag="VC0291"
/db_xref="GeneID:2615014"
CDS complement(300209..301204)
/locus_tag="VC0291"
/note="similar to GB:M95784 SP:P25717 GB:X62399 PID:145976
PID:41472; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="NifR3/Smm1 family protein"
/protein_id="NP_229946.1"
/db_xref="GI:15640319"
/db_xref="GeneID:2615014"
/translation="MLVRSCEDVLKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAG
MAVSEMMSCNPALWKTAKSQNRMVHEGESGIRSVQIAGSDPQLMAEAAQFSVENGAQI
IDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVVNAVNVPVTLKTRTGWDTDNKNC
LSIAQLAEDCGIQALALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKA
RYVLEYTGADALMIGRPAQGRPWIFQEIQHFLEHGTTMPELPISEVKDIMLGHVTALH
QFYGEYLGPRIARKHVSWYLQEHEQASAFRRTFNAIETADQQLDALEGYFDNVAS"
misc_feature complement(300215..301177)
/locus_tag="VC0291"
/note="tRNA-dihydrouridine synthase B; Provisional;
Region: PRK10415"
/db_xref="CDD:182440"
misc_feature complement(300452..301147)
/locus_tag="VC0291"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:73368"
misc_feature complement(order(300503..300508,300572..300574,
300578..300580,300671..300673,300761..300763,
300887..300889,300968..300970,301055..301057,
301127..301135))
/locus_tag="VC0291"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73368"
misc_feature complement(order(300503..300505,300572..300577,
300662..300667,300671..300676,300755..300757,
300761..300763,300875..300880,300968..300970))
/locus_tag="VC0291"
/note="active site"
/db_xref="CDD:73368"
misc_feature complement(order(300665..300667,300671..300673,
300755..300757,300878..300880))
/locus_tag="VC0291"
/note="catalytic residues [active]"
/db_xref="CDD:73368"
misc_feature complement(order(300572..300577,300662..300664,
300674..300676,300761..300763,300875..300877))
/locus_tag="VC0291"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73368"
gene complement(301317..302204)
/gene="prmA"
/locus_tag="VC0293"
/db_xref="GeneID:2614963"
CDS complement(301317..302204)
/gene="prmA"
/locus_tag="VC0293"
/note="methylates ribosomal protein L11 at multiple amino
acid positions; mutations of these genes in Escherichia
coli or Thermus thermophilus has no apparent phenotype"
/codon_start=1
/transl_table=11
/product="ribosomal protein L11 methyltransferase"
/protein_id="NP_229948.1"
/db_xref="GI:15640321"
/db_xref="GeneID:2614963"
/translation="MPWIQIKLNATNDNAEAIGDMLMEETGAVSVTFLDAKDTPVFEP
LPGETRLWGDTDVVALYEADMDTSLILQQIKASNMLAEGFAHKVEQVEDKDWEREWMD
NFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSG
KTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIEVYLPKD
QPEGLVADVVVANILAGPLRELSPIIKGLLKPGGQLAMSGILDTQAESVAEFYRDDLE
LDPIAEKSEWCRISGRKLG"
misc_feature complement(301326..302201)
/gene="prmA"
/locus_tag="VC0293"
/note="Ribosomal protein L11 methyltransferase (PrmA);
Region: PrmA; pfam06325"
/db_xref="CDD:218990"
misc_feature complement(301434..301730)
/gene="prmA"
/locus_tag="VC0293"
/note="Methyltransferase domain; Region: Methyltransf_18;
pfam12847"
/db_xref="CDD:221804"
gene complement(302413..303756)
/locus_tag="VC0295"
/db_xref="GeneID:2614965"
CDS complement(302413..303756)
/locus_tag="VC0295"
/EC_number="6.4.1.2"
/note="'an AccC homodimer forms the biotin carboxylase
subunit of the acetyl CoA carboxylase, an enzyme that
catalyzes the formation of malonyl-CoA, which in turn
controls the rate of fatty acid metabolism'"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase biotin carboxylase
subunit"
/protein_id="NP_229950.1"
/db_xref="GI:15640323"
/db_xref="GeneID:2614965"
/translation="MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLL
ADESICIGPAKSIDSYLNIPRIISAAEVTGAVAIHPGYGFLSENADFAEQVERSGFIF
VGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDGPLDNDEAKNKAHAKRIGYPVIIKA
SGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADG
QGNAIHLAERDCSMQRRHQKVVEEAPAPGITEEMRKFIGERCTRACIEIGYRGAGTFE
FLYENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSFKQEDIKIRGHA
VECRINAEDPERFLPCPGKIERFHAPGGMGVRWESHIYSGYTVPAHYDSMIGKLITYG
ENRDVAIARMRNALNEMIVEGIKTNIPLQQAIMADENFQKGGTNIHYLEKKLGIK"
misc_feature complement(302422..303756)
/locus_tag="VC0295"
/note="acetyl-CoA carboxylase biotin carboxylase subunit;
Validated; Region: PRK08591"
/db_xref="CDD:236307"
misc_feature complement(303430..303753)
/locus_tag="VC0295"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(302785..303414)
/locus_tag="VC0295"
/note="Carbamoyl-phosphate synthase L chain, ATP binding
domain; Region: CPSase_L_D2; pfam02786"
/db_xref="CDD:190425"
misc_feature complement(302434..302751)
/locus_tag="VC0295"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:214878"
gene complement(303771..304232)
/locus_tag="VC0296"
/db_xref="GeneID:2614966"
CDS complement(303771..304232)
/locus_tag="VC0296"
/EC_number="6.4.1.2"
/note="'composes the biotin carboxyl carrier protein
subunit of the acetyl-CoA carboxylase complex, the enzyme
that catalyzes the carboxylation of acetyl-CoA to
malonyl-CoA, which in turn controls the rate of fatty acid
metabolism'"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit"
/protein_id="NP_229951.2"
/db_xref="GI:161582029"
/db_xref="GeneID:2614966"
/translation="MDIRKIKKLIELVEESGIAELEISEGEESVRISRYGQPAPAPQV
HYAAAPAPVAAPAPVAQAAAVAEAPAAAKVPAGHKVLSPMVGTFYRSPSPDAKAFIEV
GQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQTVEFDQPLVVIE"
misc_feature complement(303774..304232)
/locus_tag="VC0296"
/note="acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated; Region: PRK06302"
/db_xref="CDD:235777"
misc_feature complement(303777..303995)
/locus_tag="VC0296"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature complement(order(303852..303854,303873..303881,
303906..303908))
/locus_tag="VC0296"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature complement(303876..303878)
/locus_tag="VC0296"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(304289..304741)
/locus_tag="VC0297"
/db_xref="GeneID:2614967"
CDS complement(304289..304741)
/locus_tag="VC0297"
/EC_number="4.2.1.10"
/note="catalyzes the formation of 3-dehydroshikimate from
3-dehydroquinate in chorismate biosynthesis"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate dehydratase"
/protein_id="NP_229952.1"
/db_xref="GI:15640325"
/db_xref="GeneID:2614967"
/translation="MTAKSRILVLNGPNLNLLGLREPTHYGSQTLEQIVAILRDQAQK
ADIELEHLQSNREYELIEAIHQAFGKVDFIIINPAAFTHTSVALRDALLGVAIPFIEV
HLSNVHAREPFRHHSYLSDKAQGVICGLGAQGYEFALSAAIRALQAKQ"
misc_feature complement(304310..304681)
/locus_tag="VC0297"
/note="Dehydroquinase (DHQase), type II. Dehydroquinase
(or 3-dehydroquinate dehydratase) catalyzes the reversible
dehydration of 3-dehydroquinate to form
3-dehydroshikimate. This reaction is part of two metabolic
pathways: the biosynthetic shikimate pathway...; Region:
DHQase_II; cd00466"
/db_xref="CDD:238262"
misc_feature complement(304310..304681)
/locus_tag="VC0297"
/note="Dehydroquinase class II; Region: DHquinase_II;
pfam01220"
/db_xref="CDD:189894"
misc_feature complement(order(304400..304402,304427..304435,
304472..304474,304493..304495,304502..304507,
304511..304513,304664..304666,304679..304681))
/locus_tag="VC0297"
/note="active site"
/db_xref="CDD:238262"
misc_feature complement(order(304400..304402,304460..304462,
304469..304474,304481..304483,304502..304504,
304547..304549,304556..304558,304565..304579))
/locus_tag="VC0297"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:238262"
misc_feature complement(order(304310..304312,304319..304321,
304331..304333,304343..304345,304352..304360,
304364..304375,304379..304384,304415..304420,
304424..304426))
/locus_tag="VC0297"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238262"
gene complement(305121..307070)
/locus_tag="VC0298"
/db_xref="GeneID:2614968"
CDS complement(305121..307070)
/locus_tag="VC0298"
/EC_number="6.2.1.1"
/note="Acs; catalyzes the conversion of acetate and CoA to
acetyl-CoA"
/codon_start=1
/transl_table=11
/product="acetyl-CoA synthetase"
/protein_id="NP_229953.2"
/db_xref="GI:161582028"
/db_xref="GeneID:2614968"
/translation="MSEAHIYPVKQNIKAHTHADNDTYLAMYQQSIKDPEGFWSEHGK
IVDWIKPFTKVKHTSFDPGHIDIRWFEDGTLNVSANCIDRHLATRGDQVAIIWEGDDP
TQDKTLTYKQLHQEVCRFANALKEQGVRKGDVVCIYMPMVPEAAVAMLACTRIGAVHT
IVFGGFSPEALAGRIIDSNAKLVITADEGVRGGRAVPLKKNVDEALCNPEVKNISKVM
VLKRTGGNVAWHEHRDIWWHEATAKASDNCPPEEMKAEDPLFILYTSGSTGKPKGVLH
TTGGYLVYATMTFKYVFDYQPNEVFWCTADVGWITGHSYLVYGPLANGAKTILFEGVP
NYPTTARMSEVVDKHKVNILYTAPTAIRALMAKGDEAIKGTSRDSLRIMGSVGEPINP
EAWEWYYRTIGNEKSPIVDTWWQTETGGILITPLPGATALKPGSATRPFFGVQPALVD
NMGEIVEGATEGNLVLLDSWPGQMRTVYGDHDRFEQTYFSTFKGMYFTGDGARRDEDG
YYWITGRVDDVLNVSGHRMGTAEIESALVAFNKIAEAAVVGVPHDIKGQAIYAYITLN
DGVYPSAELHKEVKDWVRKEIGAIATPDVLHWTDALPKTRSGKIMRRILRKIATGDTS
NLGDTSTLADPSVVDRLIAEKAQLK"
misc_feature complement(305124..307055)
/locus_tag="VC0298"
/note="acetyl-CoA synthetase; Provisional; Region:
PRK00174"
/db_xref="CDD:234677"
misc_feature complement(305169..306989)
/locus_tag="VC0298"
/note="Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme); Region: ACS;
cd05966"
/db_xref="CDD:213313"
misc_feature complement(order(305301..305306,305319..305321,
305493..305504,305526..305528,305535..305537,
305571..305573,305823..305840,305904..305915,
305982..305984,305991..305996,306066..306074,
306138..306143,306156..306158,306483..306485,
306489..306491,306498..306500,306576..306584))
/locus_tag="VC0298"
/note="active site"
/db_xref="CDD:213313"
misc_feature complement(order(305304..305306,305319..305321,
305496..305504,305982..305984,305991..305996,
306066..306074,306138..306140,306156..306158,
306483..306485,306489..306491,306498..306500,
306576..306584))
/locus_tag="VC0298"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:213313"
misc_feature complement(order(306255..306260,306264..306281,
306288..306290))
/locus_tag="VC0298"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213313"
misc_feature complement(order(305493..305495,305526..305528,
305535..305537,305571..305573,305823..305840,
305904..305915,306138..306143))
/locus_tag="VC0298"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213313"
misc_feature complement(order(305829..305831,305910..305915,
306138..306143))
/locus_tag="VC0298"
/note="acetate binding site [chemical binding]; other
site"
/db_xref="CDD:213313"
gene complement(307273..307944)
/locus_tag="VC0299"
/db_xref="GeneID:2614969"
CDS complement(307273..307944)
/locus_tag="VC0299"
/note="3'-5' exonuclease of DNA polymerase III"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="NP_229954.1"
/db_xref="GI:15640327"
/db_xref="GeneID:2614969"
/translation="MARLSLSNSRLRWLMNWLLRRYWHAKLKGSPYQRLFETARHHEY
VSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRH
QDLHDGLSEKEALLQLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ
IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLTKGDLPQF
IAPGV"
misc_feature complement(<307294..307857)
/locus_tag="VC0299"
/note="DNA polymerase III, epsilon subunit and related
3'-5' exonucleases [DNA replication, recombination, and
repair]; Region: DnaQ; COG0847"
/db_xref="CDD:31188"
misc_feature complement(307324..307812)
/locus_tag="VC0299"
/note="DEDDh 3'-5' exonuclease domain family; Region:
DEDDh; cd06127"
/db_xref="CDD:176648"
misc_feature complement(order(307348..307350,307363..307365,
307540..307548,307552..307557,307786..307788,
307792..307803))
/locus_tag="VC0299"
/note="active site"
/db_xref="CDD:176648"
misc_feature complement(order(307348..307350,307363..307365,
307543..307548,307552..307557,307786..307788,
307792..307803))
/locus_tag="VC0299"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176648"
misc_feature complement(order(307348..307350,307363..307365,
307540..307542,307795..307797,307801..307803))
/locus_tag="VC0299"
/note="catalytic site [active]"
/db_xref="CDD:176648"
gene complement(307911..309734)
/locus_tag="VC0300"
/db_xref="GeneID:2614970"
CDS complement(307911..309734)
/locus_tag="VC0300"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229955.1"
/db_xref="GI:15640328"
/db_xref="GeneID:2614970"
/translation="MPDKFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHP
VTHLHILIKGTVEERSPDGKEVFAHYANDDLFDVRAMFEELSKHQYMALEDTLSYLLP
KSIFLQLYEQNGEFAAYFDNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILS
PEQPIHSVTQQLKERGIDAALVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPL
DTPVGEIATFPVLHVDEGDFLFNAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFS
THSHVLTLAIARAASIDELALAANKQRELVESLMSRGVRTRFVMELIAAVNEQIIEKA
FELVVPPALHDQCCLVVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTL
LQLGYPLCPGKVMVNNPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNR
ALLAPVKAHLQHLMAGQELILAEFTRPALNFSVPLTLFGNVKSSKQGIDIKQGGIFPI
VHGVRALSLEHAIDANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRLAQQLGNQ
HSTNQLDFKQLDRTERDLLRHSLHVVKKFKQWLGYHYQIRD"
misc_feature complement(307917..309734)
/locus_tag="VC0300"
/note="Predicted signal-transduction protein containing
cAMP-binding and CBS domains [Signal transduction
mechanisms]; Region: COG2905"
/db_xref="CDD:225457"
misc_feature complement(309375..309704)
/locus_tag="VC0300"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:237999"
misc_feature complement(order(309471..309479,309501..309506))
/locus_tag="VC0300"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:237999"
misc_feature complement(order(309387..309395,309405..309413))
/locus_tag="VC0300"
/note="flexible hinge region; other site"
/db_xref="CDD:237999"
misc_feature complement(308916..309275)
/locus_tag="VC0300"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the bacterial CAP_ED (cAMP receptor protein effector
domain) family of transcription factors and the DUF294
domain. Members of CAP_ED, include CAP...; Region:
CBS_pair_CAP-ED_DUF294_assoc_bac; cd04589"
/db_xref="CDD:239962"
misc_feature complement(308349..308831)
/locus_tag="VC0300"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature complement(order(308526..308528,308634..308636,
308640..308642))
/locus_tag="VC0300"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
gene complement(309689..309895)
/locus_tag="VC0301"
/db_xref="GeneID:2614971"
CDS complement(309689..309895)
/locus_tag="VC0301"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229956.1"
/db_xref="GI:15640329"
/db_xref="GeneID:2614971"
/translation="MLISTDSPSSYRCQSADHRSVEKPLLPALDQSRLEGQGKFVTLS
EPVPMMSATSCLINSICSHHRLID"
gene 309994..311184
/locus_tag="VC0302"
/db_xref="GeneID:2614972"
CDS 309994..311184
/locus_tag="VC0302"
/note="transporter of 3-phenylpropionate across the inner
membrane; member of the major facilitator superfamily of
transporters"
/codon_start=1
/transl_table=11
/product="3-phenylpropionic acid transporter"
/protein_id="NP_229957.1"
/db_xref="GI:15640330"
/db_xref="GeneID:2614972"
/translation="MFTPTPYGWISQYFIGFFFAYGVYLPFWSLWFEDQGVSATDIGV
LVGIGFATRCVANLVLTPRLHRVEQLMPALRWLSFAAMLFVGFHFFTGGSFWLMALAT
VLFNLCCGPVVPISDAMANYYAKLKMLDYGRTRLWGSIAFIAGSTVVGFLVAKWGSLM
ILYTALVGVAVSWLLSLRQITPMPVTEHEAHAVRPKLKELLTEWPVVKFLLLVALIQG
SHAAYYSFGSIYWKQAGHSEDIIGYLWSLGVVAEVLVFAFSKRWFAGWSLRTLFFVAS
LGVIARWGLTASTTTILALVAIQLLHGVTFAIAHIAAIQYIQHAPQNKMVALQALYNA
IPLGAVIAAVTTLSGWGYEHWGAAVFWAMAAMGGLALLIRVDTPPSTVQDGNALKAEP
EAQN"
misc_feature 309997..311136
/locus_tag="VC0302"
/note="putative 3-phenylpropionic acid transporter;
Provisional; Region: PRK11128"
/db_xref="CDD:236856"
misc_feature 310009..310239
/locus_tag="VC0302"
/note="MFS_1 like family; Region: MFS_1_like; pfam12832"
/db_xref="CDD:193307"
gene 311277..314720
/locus_tag="VC0303"
/db_xref="GeneID:2614973"
CDS 311277..314720
/locus_tag="VC0303"
/note="similar to GP:2808665; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="NP_229958.1"
/db_xref="GI:15640331"
/db_xref="GeneID:2614973"
/translation="MQGWLVIPVSLAYLGVLFLIAWYGDRQTRWLANWRPWIYSLSIA
VYCTSWTFYGTVGQASVNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADF
IAARYGKSQGLAVAVTVIAVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSW
FVVLALALFTMLFGTRHIDNTEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG
LELSTIAASTYQAPNWPTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFP
VYLLLMSLFVLPIAWTGQGLLPNTSPDTFVISLPVFAGAHDIALLAFLGGTSAASGMV
IVSTIALAIMVSNDLVMPLLLRRMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYL
VLDSIPSLSAIGFLSFSAITQFAPAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSA
TDMLAGDASNNVLLWVITPPDWLVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLS
ERLQAAAFVGTPLPENENMSLYQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRET
LLPNQQASSALIRHTERVLAGVFGASSAKLVLTSALQGRKMQLEEVATIVDEASELYD
FSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNA
QQGLCGPGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDI
TVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVTATQRSERESQSKSRFLAAVSH
DLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESALGAAEDLISDLLDISRLESGKID
LHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSLLWVHSDPKLLRRVIQNFLTNAF
RYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQQEIFEEFNRGGQVRSDQGLGLG
LAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQPMPSSLTQTVAMVNEKGSELQHL
RVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKALEGQWIPDVILSDYRLDNGR
TGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFRFMAKPIKPLKLRALLNSL
S"
misc_feature 311277..312791
/locus_tag="VC0303"
/note="Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only]; Region:
PutP; COG0591"
/db_xref="CDD:223664"
misc_feature order(311406..311408,311415..311417,312276..312278,
312285..312290)
/locus_tag="VC0303"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212031"
misc_feature 313176..313520
/locus_tag="VC0303"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:221813"
misc_feature 313185..313496
/locus_tag="VC0303"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature order(313233..313235,313245..313247,313263..313265,
313305..313313,313341..313343,313428..313430)
/locus_tag="VC0303"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(313296..313298,313308..313310,313359..313361,
313371..313376)
/locus_tag="VC0303"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature <313650..314306
/locus_tag="VC0303"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature 313650..>313778
/locus_tag="VC0303"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(313650..313652,313662..313664,313674..313676,
313683..313685,313695..313697,313704..313706,
313752..313754,313764..313766,313773..313775)
/locus_tag="VC0303"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 313668..313670
/locus_tag="VC0303"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 313980..314285
/locus_tag="VC0303"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(313998..314000,314010..314012,314019..314021,
314088..314090,314094..314096,314100..314102,
314106..314111,314184..314195,314241..314243,
314247..314249,314262..314267,314271..314273)
/locus_tag="VC0303"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 314010..314012
/locus_tag="VC0303"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(314100..314102,314106..314108,314184..314186,
314190..314192)
/locus_tag="VC0303"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 314370..314708
/locus_tag="VC0303"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 314373..314714
/locus_tag="VC0303"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(314382..314387,314517..314519,314544..314546,
314607..314609,314661..314663,314670..314675)
/locus_tag="VC0303"
/note="active site"
/db_xref="CDD:238088"
misc_feature 314517..314519
/locus_tag="VC0303"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(314526..314531,314538..314546)
/locus_tag="VC0303"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 314670..314678
/locus_tag="VC0303"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene complement(314843..316336)
/locus_tag="VC0304"
/db_xref="GeneID:2614974"
CDS complement(314843..316336)
/locus_tag="VC0304"
/EC_number="3.6.1.40"
/note="'catalyzes the conversion of guanosine
5'-triphosphate,3'-diphosphate (pppGpp) to guanosine
5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp
control the stringent response during amino acid
starvation'"
/codon_start=1
/transl_table=11
/product="guanosine pentaphosphate phosphohydrolase"
/protein_id="NP_229959.1"
/db_xref="GI:15640332"
/db_xref="GeneID:2614974"
/translation="MSQAVSSPLYAAIDLGSNSFHMLVVRHIDGSVQTMAKIKRKVRL
AAGLDEHNALSLDAMQRGWDCLSLFAERLQDIPAENIRIVGTATLRTATNAGEFIAKA
NQILGHPIDVISGEEEAATIYKGVAHTSGGLGRRLVVDIGGASTELIIGEGFEAKALT
SLKMGCVTWLERHFKDRQLTATNFNNAILAAKQMLDPILTQYTELGWNVCVGASGTVQ
ALQEIMLAQGMDEVITLTKLKRLQKQAMLADHLEELDIEGLTLERALVFPSGLSILIA
IFESLNIEAMTLAGGALREGLVYEMVQDLRQEDIRARTIRCVQTRYQIDSAYGDQVAT
LASKLLAQCGGEAWINEPQAEMLLRTAAKLHEIGLTIDFKKGGEHSAYLLQHLDLPGY
TRAQKHYLGEIVRRYREQLTSLPEQYALSGTSGKRVLRLLRLAVLLSHRRSPALEPMV
ELSAQEDKLTLTLDGEWLAKNPLTRTELELEANRQTDIGWPLSIECH"
misc_feature complement(314846..316330)
/locus_tag="VC0304"
/note="guanosine pentaphosphate phosphohydrolase;
Provisional; Region: PRK11031"
/db_xref="CDD:236826"
misc_feature complement(315434..316270)
/locus_tag="VC0304"
/note="Ppx/GppA phosphatase family; Region: Ppx-GppA;
pfam02541"
/db_xref="CDD:202276"
gene complement(316344..317660)
/locus_tag="VC0305"
/db_xref="GeneID:2614975"
CDS complement(316344..317660)
/locus_tag="VC0305"
/note="'enables ATP-dependent unwinding of double stranded
RNA as a component of the RNA degradosome, a multi-enzyme
complex important in RNA processing and messenger RNA
degradation'"
/codon_start=1
/transl_table=11
/product="ATP-dependent RNA helicase RhlB"
/protein_id="NP_229960.1"
/db_xref="GI:15640333"
/db_xref="GeneID:2614975"
/translation="MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLL
SGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFN
DAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQ
AVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEH
VVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHL
AADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLP
DDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSALLTD
LPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPKKEA"
misc_feature complement(316446..317657)
/locus_tag="VC0305"
/note="ATP-dependent RNA helicase RhlB; Provisional;
Region: PRK04837"
/db_xref="CDD:235314"
misc_feature complement(317004..317630)
/locus_tag="VC0305"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:238167"
misc_feature complement(317481..317495)
/locus_tag="VC0305"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238167"
misc_feature complement(317157..317168)
/locus_tag="VC0305"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:238167"
misc_feature complement(317061..317069)
/locus_tag="VC0305"
/note="motif III; other site"
/db_xref="CDD:238167"
misc_feature complement(316584..316964)
/locus_tag="VC0305"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature complement(order(316716..316724,316797..316802,
316860..316871))
/locus_tag="VC0305"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature complement(order(316614..316616,316623..316625,
316635..316637,316698..316700))
/locus_tag="VC0305"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
gene 317772..318098
/locus_tag="VC0306"
/db_xref="GeneID:2614976"
CDS 317772..318098
/locus_tag="VC0306"
/note="similar to SP:P00274 GB:M87049 GB:K02845 GB:M10424
GB:M12779; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="NP_229961.1"
/db_xref="GI:15640334"
/db_xref="GeneID:2614976"
/translation="MSDKILQLTDDGFENDVIKAAGPVLVDFWAEWCGPCKMIAPILD
EVADEYAGKLTIGKLNIDHNAGTPPKFGIRGIPTLLLFKDGSVVATKVGALSKTQLKE
FLDANL"
misc_feature 317814..318086
/locus_tag="VC0306"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:239245"
misc_feature 317838..318032
/locus_tag="VC0306"
/note="Thioredoxin-like; Region: Thioredoxin_8; pfam13905"
/db_xref="CDD:222448"
misc_feature order(317868..317870,317877..317879)
/locus_tag="VC0306"
/note="catalytic residues [active]"
/db_xref="CDD:239245"
gene 318296..319555
/gene="rho"
/locus_tag="VC0307"
/db_xref="GeneID:2614977"
CDS 318296..319555
/gene="rho"
/locus_tag="VC0307"
/note="An RNA-DNA helicase that actively releases nascent
mRNAs from paused transcription complexes"
/codon_start=1
/transl_table=11
/product="transcription termination factor Rho"
/protein_id="NP_229962.1"
/db_xref="GI:15640335"
/db_xref="GeneID:2614977"
/translation="MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAK
SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR
PPKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITAR
VLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTE
MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNT
VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEE
FKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGE
TDAMEFLIDKLAMTKTNDEFFDAMRRQ"
misc_feature 318296..319549
/gene="rho"
/locus_tag="VC0307"
/note="transcription termination factor Rho; Provisional;
Region: rho; PRK09376"
/db_xref="CDD:236490"
misc_feature 318308..318436
/gene="rho"
/locus_tag="VC0307"
/note="Rho termination factor, N-terminal domain; Region:
Rho_N; smart00959"
/db_xref="CDD:198027"
misc_feature 318446..318649
/gene="rho"
/locus_tag="VC0307"
/note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
protein is a transcription termination factor in most
bacteria. In bacteria, there are two distinct mechanisms
for mRNA transcription termination. In intrinsic
termination, RNA polymerase and nascent mRNA...; Region:
Rho_CSD; cd04459"
/db_xref="CDD:239906"
misc_feature order(318461..318463,318467..318469,318479..318481,
318485..318487,318491..318493,318527..318529,
318533..318535,318608..318610,318617..318625)
/gene="rho"
/locus_tag="VC0307"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239906"
misc_feature 318761..319507
/gene="rho"
/locus_tag="VC0307"
/note="Transcription termination factor rho is a bacterial
ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
monomer consists of an N-terminal domain of the OB fold,
which is responsible for binding to cysteine rich
nucleotides. This alignment is of the...; Region:
rho_factor; cd01128"
/db_xref="CDD:238548"
misc_feature order(318812..318814,319145..319147,319178..319180,
319187..319192,319199..319201,319208..319210,
319217..319219,319292..319297,319301..319315,
319319..319321,319391..319396,319436..319438,
319448..319450)
/gene="rho"
/locus_tag="VC0307"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238548"
misc_feature 318827..318850
/gene="rho"
/locus_tag="VC0307"
/note="Walker A motif; other site"
/db_xref="CDD:238548"
misc_feature order(318836..318838,318842..318853,319358..319360)
/gene="rho"
/locus_tag="VC0307"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238548"
misc_feature 319076..319090
/gene="rho"
/locus_tag="VC0307"
/note="Walker B motif; other site"
/db_xref="CDD:238548"
gene 319654..320646
/locus_tag="VC0308"
/db_xref="GeneID:2614978"
CDS 319654..320646
/locus_tag="VC0308"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229963.1"
/db_xref="GI:15640336"
/db_xref="GeneID:2614978"
/translation="MQQGWLCLVLLFLLGLPPYALGGDITATERELWLAEPQTQQKAE
ELYLLALHNEVDRLQFNLQRISYPAQEVVRFLLLQKFEQGQLILTEELAVFIAAQKSQ
TPNYLIAERGDGYEFSVPAFDYAAIAHRLLKQAQQQQDIMMFVLQAENGELNLREWIS
GSSAQSVDVRQRLLLTELHRLSPQAMERLIAQITTEQVTSWLPSATVMVQFARRSQSH
ALYQRLWLMKANDEIRQEVARLGAQADGFAKQQLMLAVENPSLKQEALQALIEIRPMS
MEVEQFLIEKLGQSENASQVASMLAQSGYQGWLHELVSSNRAVKQQAILAVLNP"
gene 320728..322569
/locus_tag="VC0309"
/db_xref="GeneID:2614979"
CDS 320728..322569
/locus_tag="VC0309"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229964.1"
/db_xref="GI:15640337"
/db_xref="GeneID:2614979"
/translation="MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKG
PALLFENPLGYDFPVLTNLFGTPERVAMGMGRQQVQELRDVGQWLAYLKEPEPPRGLK
ELIEKLPVFKQVLNMPVKRLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGL
TITRGPHKKRQNLGIYRQQKIARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAF
GADPATILGAVTPVPDTLSEYAFAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDP
NEFADEGPYGDHTGYYNEVERHHVFTVTHVTMRNKPIYHSTYTGRPPDEPAVLGVALN
EVFVPILQKQFPEIADFYLPPEGCSYRMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYT
KFVIVCDEQVNARDWPQVIAAMVNHMSPLRDTLFIEHTPIDSLDFASPVVGLGSKIGL
DATAKWPAELAVSNSDQSDKTTELSLEALKACLSDEADVLDVALPEAANDKLVLLLIN
KQEAGQAQQLLQRVVDKLNGDSPLKFVILCDDDVNIHDWNDVIWAMTTRMDPARDSLR
IVGQDLICFDATNKLPDEVEREWGTPIRKDPKLVAKIDSLWDELGIV"
misc_feature 320728..322104
/locus_tag="VC0309"
/note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
Region: UbiD; cl00311"
/db_xref="CDD:241772"
misc_feature <322210..322566
/locus_tag="VC0309"
/note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
Region: UbiD; cl00311"
/db_xref="CDD:241772"
gene 322566..322835
/locus_tag="VC0311"
/db_xref="GeneID:2614980"
CDS 322566..322835
/locus_tag="VC0311"
/note="similar to SP:P46047 PID:599651; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="ferredoxin"
/protein_id="NP_229965.1"
/db_xref="GI:15640338"
/db_xref="GeneID:2614980"
/translation="MTYTVRIVPNDRQFIIHSGETVLDAALNQQIAFPHRCRIGACAA
CLCKLVEGEVEYELEPLLTEQEKATGWIFACQACAITDLVLTFEE"
misc_feature 322569..322832
/locus_tag="VC0311"
/note="Ferredoxin [Energy production and conversion];
Region: Fdx; COG0633"
/db_xref="CDD:223706"
misc_feature 322575..322823
/locus_tag="VC0311"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:238126"
misc_feature order(322662..322667,322674..322676,322683..322685,
322689..322700,322785..322790)
/locus_tag="VC0311"
/note="catalytic loop [active]"
/db_xref="CDD:238126"
misc_feature order(322674..322676,322689..322691,322698..322700,
322788..322790)
/locus_tag="VC0311"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:238126"
gene 322851..323561
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/db_xref="GeneID:2614981"
CDS 322851..323561
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/note="NAD(P)H-flavin reductase; catalyzes the reversible
oxidation/reduction of NAD(P) and flavine mononucleotide;
in Salmonella and E. coli this protein also reduces
aquacob(III)alamin to cob(II)alamin"
/codon_start=1
/transl_table=11
/product="FMN reductase"
/protein_id="NP_229966.1"
/db_xref="GI:15640339"
/db_xref="GeneID:2614981"
/translation="MIIQCQVKSVQPLATHTYQILLQPEHAVAYQAGQYLMVVMGEKD
KRPFSLASSPCRSNGELELHIGAADHSAFAHQVVEKFQQAHLNQTWVEVDVPHGNAAL
QESERPLLLIAGGTGFSYVRSILDHCLSQGKTQPIYLYWGARDAAQLYALNELQELAK
QHAHLQVVPVVEQAQDDWAGKVGNVLQAINNDFASLEAFDIYIAGRFEMAGAAREQFT
QNKQARRDRMFADAYAFI"
misc_feature 322851..323558
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/note="FMN reductase; Validated; Region: fre; PRK08051"
/db_xref="CDD:236142"
misc_feature 322863..323549
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/note="NAD(P)H dependent flavin oxidoreductases use flavin
as a substrate in mediating electron transfer from iron
complexes or iron proteins. Structurally similar to
ferredoxin reductases, but with only 15% sequence
identity, flavin reductases reduce FAD, FMN; Region:
flavin_oxioreductase; cd06189"
/db_xref="CDD:99786"
misc_feature order(322953..322955,322986..322997,323040..323048,
323052..323054,323064..323072,323196..323198,
323205..323207,323541..323543,323547..323549)
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99786"
misc_feature order(322986..322988,322992..322997)
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99786"
misc_feature order(323061..323063,323070..323072,323079..323081,
323100..323102,323136..323138,323142..323144)
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99786"
misc_feature order(323181..323183,323193..323204,323208..323210)
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99786"
misc_feature order(323196..323201,323274..323282,323463..323468)
/gene="fre"
/locus_tag="VC0312"
/gene_synonym="fadI; ubiB"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99786"
gene 323974..324171
/locus_tag="VC0314"
/db_xref="GeneID:2615099"
CDS 323974..324171
/locus_tag="VC0314"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229968.1"
/db_xref="GI:15640341"
/db_xref="GeneID:2615099"
/translation="MWALVDDNQKRFINELSDHLNEQSFSTVNSTLLRFLLSKECNQY
SLSRSESFTKLLIEEFDHGSD"
gene 324147..325681
/gene="16Sc"
/locus_tag="VCr007"
/db_xref="GeneID:2615100"
rRNA 324147..325681
/gene="16Sc"
/locus_tag="VCr007"
/product="16S ribosomal RNA"
/db_xref="GeneID:2615100"
gene 325745..325821
/gene="tRNA-Ile-2"
/locus_tag="VCt011"
/db_xref="GeneID:2615101"
tRNA 325745..325821
/gene="tRNA-Ile-2"
/locus_tag="VCt011"
/product="tRNA-Ile"
/db_xref="GeneID:2615101"
gene 325830..325905
/gene="tRNA-Ala-3"
/locus_tag="VCt012"
/db_xref="GeneID:2615102"
tRNA 325830..325905
/gene="tRNA-Ala-3"
/locus_tag="VCt012"
/product="tRNA-Ala"
/db_xref="GeneID:2615102"
gene 326193..329079
/gene="23Sc"
/locus_tag="VCr008"
/db_xref="GeneID:2615103"
rRNA 326193..329079
/gene="23Sc"
/locus_tag="VCr008"
/product="23S ribosomal RNA"
/db_xref="GeneID:2615103"
gene 329207..329324
/gene="5Sc"
/locus_tag="VCr009"
/db_xref="GeneID:2615104"
rRNA 329207..329324
/gene="5Sc"
/locus_tag="VCr009"
/product="5S ribosomal RNA"
/db_xref="GeneID:2615104"
gene 329350..329426
/gene="tRNA-Asp-2"
/locus_tag="VCt013"
/db_xref="GeneID:2615105"
tRNA 329350..329426
/gene="tRNA-Asp-2"
/locus_tag="VCt013"
/product="tRNA-Asp"
/db_xref="GeneID:2615105"
gene complement(329711..331051)
/gene="pssA"
/locus_tag="VC0315"
/db_xref="GeneID:2615106"
CDS complement(329711..331051)
/gene="pssA"
/locus_tag="VC0315"
/EC_number="2.7.8.8"
/note="catalyzes de novo synthesis of phosphatidylserine
from CDP-diacylglycerol and L-serine which leads
eventually to the production of phosphatidylethanolamine;
bounds to the ribosome"
/codon_start=1
/transl_table=11
/product="phosphatidylserine synthase"
/protein_id="NP_229969.1"
/db_xref="GI:15640342"
/db_xref="GeneID:2615106"
/translation="MIARRNPIEQLPAIAQDPDKFGVLLSAAEFRTHLVESIRQARKR
IYLVALYLENDDAGREILTELYAAKQRNPGLEIHICVDWHRAQRGLIGAAESEGNAAM
YRDFAQQHEHCIPVYGIPVRGREVFGVLHLKGFIIDDQVIYSGASLNNVYLQFHGRYR
FDRYHTLENAELADSMVHFIQQEMLAHPAVNNLACGSKPTTKEIKSDIRQFRASLAQA
NYQFAKQKVNEGQVAVTPLVGLGRRRNRLNQSIIQLLASAKDEVFICTPYFNFPPSIA
KEVKKALRRGVKVHIVIGDKTANDFYIAPEEPFKTIGGLPYLYELNLRRFAKANEAHI
ASRKLSIHLWKHENHSFHLKGIWVDKRYMLITGNNLNPRAWKLDLENAILIRDDYHHL
TTKFEAEIDNILQHTQLICTYKQIEKPEHYPEKVQRLVRRIMRLKADRVLKQIL"
misc_feature complement(329714..331039)
/gene="pssA"
/locus_tag="VC0315"
/note="phosphatidylserine synthase; Provisional; Region:
pssA; PRK09428"
/db_xref="CDD:236510"
misc_feature complement(330503..331021)
/gene="pssA"
/locus_tag="VC0315"
/note="Catalytic domain, repeat 1, of phosphatidylserine
synthases from gram-negative bacteria; Region:
PLDc_PSS_G_neg_1; cd09134"
/db_xref="CDD:197232"
misc_feature complement(order(330503..330505,330515..330517,
330524..330529,330539..330541,330551..330553,
330557..330559,330563..330577,330617..330619,
330623..330625,330653..330673,330683..330697,
330983..330985,330989..330991))
/gene="pssA"
/locus_tag="VC0315"
/note="domain interface [polypeptide binding]; other site"
/db_xref="CDD:197232"
misc_feature complement(order(330566..330568,330611..330613,
330617..330619,330653..330655,330659..330661))
/gene="pssA"
/locus_tag="VC0315"
/note="putative active site [active]"
/db_xref="CDD:197232"
misc_feature complement(330659..330661)
/gene="pssA"
/locus_tag="VC0315"
/note="catalytic site [active]"
/db_xref="CDD:197232"
misc_feature complement(329714..330358)
/gene="pssA"
/locus_tag="VC0315"
/note="Catalytic domain, repeat 2, of phosphatidylserine
synthases from gram-negative bacteria; Region:
PLDc_PSS_G_neg_2; cd09136"
/db_xref="CDD:197234"
misc_feature complement(order(329843..329848,329855..329857,
329867..329869,329876..329878,329894..329896,
329900..329923,329933..329935,329951..329962,
329993..330007,330332..330334,330338..330358))
/gene="pssA"
/locus_tag="VC0315"
/note="domain interface [polypeptide binding]; other site"
/db_xref="CDD:197234"
misc_feature complement(order(329912..329914,329945..329947,
329951..329953,329990..329992,329996..329998))
/gene="pssA"
/locus_tag="VC0315"
/note="putative active site [active]"
/db_xref="CDD:197234"
misc_feature complement(329996..329998)
/gene="pssA"
/locus_tag="VC0315"
/note="catalytic site [active]"
/db_xref="CDD:197234"
gene 331022..331174
/locus_tag="VC0316"
/db_xref="GeneID:2615107"
CDS 331022..331174
/locus_tag="VC0316"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229970.1"
/db_xref="GI:15640343"
/db_xref="GeneID:2615107"
/translation="MFDWVSSSNHWDALPCCVQNCEQWILPKLVKKRLEMATILDITS
LDIASE"
gene complement(331146..331592)
/locus_tag="VC0317"
/db_xref="GeneID:2615108"
CDS complement(331146..331592)
/locus_tag="VC0317"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229971.1"
/db_xref="GI:15640344"
/db_xref="GeneID:2615108"
/translation="MADKHERPMLEFQQFAPIKLPLIKRFYKNHYPGSKPKSDEQVIV
ALKDREIVGVVRFRMIGQYRLLTGMAVEAQSRQQGIGKQLLDYCQKQWLNPATFCFAY
THLEHFYQQGHFIQIAPHALPAELHLLFERYSRSGKDLIPMQYQAK"
misc_feature complement(331320..331469)
/locus_tag="VC0317"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(331347..331352,331380..331388))
/locus_tag="VC0317"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
misc_feature complement(331242..>331382)
/locus_tag="VC0317"
/note="N-Acyltransferase superfamily: Various enyzmes that
characteristicly catalyze the transfer of an acyl group to
a substrate; Region: NAT_SF; cl00357"
/db_xref="CDD:214053"
gene 331605..332678
/gene="murB"
/locus_tag="VC0318"
/db_xref="GeneID:2615109"
CDS 331605..332678
/gene="murB"
/locus_tag="VC0318"
/EC_number="1.1.1.158"
/note="catalyzes the reduction of UDP-N-acetylglucosamine
enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylenolpyruvoylglucosamine reductase"
/protein_id="NP_229972.1"
/db_xref="GI:15640345"
/db_xref="GeneID:2615109"
/translation="MASLSYPKTTMQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLK
ALYCSAEWASLPKLIIGKGSNMLFTCHYTGMIVVNRLNGIEHQQDDDYHRLHVAGGED
WPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNIGAYGVEFKDVCDYVEYLCLETGTV
KRLTMEECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHD
VYQRVCATRMEKLPDPAVMGNAGSFFKNPVISQQAFARLQIEHPDVVAYPAEQGVKVA
AGWLIDQAGLKGHQIGGAKVHPKQALVIVNTGDASAQDVLMLAADIQQRVFNCYGIEL
EHEVRFIGESEETNLKQWMSEQA"
misc_feature 331635..332627
/gene="murB"
/locus_tag="VC0318"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional; Region: murB; PRK00046"
/db_xref="CDD:234593"
misc_feature 331695..332096
/gene="murB"
/locus_tag="VC0318"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:216574"
misc_feature 332259..332630
/gene="murB"
/locus_tag="VC0318"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase,
C-terminal domain; Region: MurB_C; pfam02873"
/db_xref="CDD:111727"
gene 332675..333637
/locus_tag="VC0319"
/db_xref="GeneID:2615110"
CDS 332675..333637
/locus_tag="VC0319"
/EC_number="6.3.4.15"
/note="'catalyzes the formation of biotinyl-5'-AMP, also
acts as a transcriptional repressor of the biotin operon'"
/codon_start=1
/transl_table=11
/product="biotin--protein ligase"
/protein_id="NP_229973.1"
/db_xref="GI:15640346"
/db_xref="GeneID:2615110"
/translation="MKEHSAKLAILKQLADGDFHSGEVLGAQLGISRAAISKHIQGIR
DWGVDVFRVQGKGYQLAQAMTLLDQSVIQSQVNNPVELHPIIGSTNQYLLDHVETLVS
GTVCLAEYQASGRGRRGRHWVSPFGANLYLSIYWRLDAGMAAAMGLSLVVGVAIVEAL
EAMGVDGVKLKWPNDLYYQDKKLAGILVEMSGQAGAAAHLVIGMGINLAMRDNEGNID
QPWISLAEVTGQSRIDRNALAINLIAALDRTLRQYEISGMQNFVERWNRWDNFIGRPV
KLLMGANEVRGIERGIDEHGGVLLETEEGLKSFIGGEISLRKND"
misc_feature 332678..333634
/locus_tag="VC0319"
/note="bifunctional biotin--[acetyl-CoA-carboxylase]
synthetase/biotin operon repressor; Provisional; Region:
PRK11886"
/db_xref="CDD:237010"
misc_feature 332684..332878
/locus_tag="VC0319"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature order(332687..332689,332696..332701,332708..332713,
332720..332722,332813..332815,332867..332872,
332876..332878)
/locus_tag="VC0319"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238042"
misc_feature order(332687..332695,332732..332740,332768..332779,
332783..332788,332795..332800,332804..332809,
332825..332833,332846..332848)
/locus_tag="VC0319"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature order(332732..332734,332741..332743,332867..332869)
/locus_tag="VC0319"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
misc_feature 332930..333295
/locus_tag="VC0319"
/note="Biotin/lipoate A/B protein ligase family; Region:
BPL_LplA_LipB; pfam03099"
/db_xref="CDD:217367"
misc_feature 333485..333625
/locus_tag="VC0319"
/note="Biotin protein ligase C terminal domain; Region:
BPL_C; pfam02237"
/db_xref="CDD:216943"
gene complement(333687..334814)
/locus_tag="VC0320"
/db_xref="GeneID:2615111"
CDS complement(333687..334814)
/locus_tag="VC0320"
/EC_number="2.7.1.33"
/note="catalyzes the formation of
(R)-4'-phosphopantothenate in coenzyme A biosynthesis"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="NP_229974.1"
/db_xref="GI:15640347"
/db_xref="GeneID:2615111"
/translation="MVRILVNDLGGCNPYLEKKLNFQRILLVRCFFSQIRAQSLILAS
FYFVLSCAYCIFAFLILNRMIEPIMSPYLTFDRQHWAQLRNSVPMTLSESDLKELQGI
NDHLSMTEAVEIYLPLARLLNLYVAARQSRNGVLHQFLGNTESAPPFVIGIAGSVAVG
KSTTARLLKALLSRWENHPKVELITTDGFLYPNKVLTERGIMHKKGFPESYDIRRLVE
FVSEVKAGQPNVTAPVYSHLTYDITDEMKVVDRPDVLIIEGLNVLQSGMDYPHDPHRV
FISDFLDFSIYVDADSQLIEKWYIERFMKFRQGAFKKPGSYFSHYTALTEAQAEQKAR
SIWETINGKNLVENILPTKGRAHLILRKGLNHTVEEVLLRK"
misc_feature complement(333690..334610)
/locus_tag="VC0320"
/note="pantothenate kinase; Provisional; Region: PRK05439"
/db_xref="CDD:180082"
misc_feature complement(333696..334367)
/locus_tag="VC0320"
/note="Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps in
coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point
in...; Region: PanK; cd02025"
/db_xref="CDD:30198"
misc_feature complement(order(333717..333719,333729..333731,
333909..333911,333921..333923,334323..334334,
334341..334343))
/locus_tag="VC0320"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature complement(order(333717..333719,333897..333899,
333909..333911,334104..334106,334317..334319,
334329..334334))
/locus_tag="VC0320"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature complement(order(334041..334043,334329..334331))
/locus_tag="VC0320"
/note="Mg2+-binding site [ion binding]; other site"
/db_xref="CDD:30198"
gene 334819..334894
/gene="tRNA-Thr-2"
/locus_tag="VCt014"
/db_xref="GeneID:2615083"
tRNA 334819..334894
/gene="tRNA-Thr-2"
/locus_tag="VCt014"
/product="tRNA-Thr"
/db_xref="GeneID:2615083"
gene 334930..335014
/gene="tRNA-Tyr-1"
/locus_tag="VCt015"
/db_xref="GeneID:2615084"
tRNA 334930..335014
/gene="tRNA-Tyr-1"
/locus_tag="VCt015"
/product="tRNA-Tyr"
/db_xref="GeneID:2615084"
gene 335050..335124
/gene="tRNA-Gly-3"
/locus_tag="VCt016"
/db_xref="GeneID:2615085"
tRNA 335050..335124
/gene="tRNA-Gly-3"
/locus_tag="VCt016"
/product="tRNA-Gly"
/db_xref="GeneID:2615085"
gene 335138..335213
/gene="tRNA-Thr-3"
/locus_tag="VCt017"
/db_xref="GeneID:2615086"
tRNA 335138..335213
/gene="tRNA-Thr-3"
/locus_tag="VCt017"
/product="tRNA-Thr"
/db_xref="GeneID:2615086"
gene 335326..336510
/gene="tuf"
/locus_tag="VC0321"
/db_xref="GeneID:2615087"
CDS 335326..336510
/gene="tuf"
/locus_tag="VC0321"
/EC_number="3.6.5.3"
/note="'EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu'"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="NP_229975.1"
/db_xref="GI:15640348"
/db_xref="GeneID:2615087"
/translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGGKA
RDFASIDNAPEERERGITINTSHVEYDTPNRHYAHVDCPGHADYVKNMITGAAQMDGG
ILVVAATDGRMPQTREHILLGRQVGIPYIIVFMNKCDMVDDEELLELVEMEVRELLSE
YDFPGDDLPVIQGSALGALNGEAQWEAKIVELAEALDTYIPEPERAVDMAFLMPIEDV
FSIQGRGTVVTGRIERGILKVGDEVAIVGIKETVKTTCTGVEMFRKLLDEGRAGENVG
ALLRGTKREEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFR
TTDVTGSIELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKI
IA"
misc_feature 335326..336507
/gene="tuf"
/locus_tag="VC0321"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 335356..335934
/gene="tuf"
/locus_tag="VC0321"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 335380..335403
/gene="tuf"
/locus_tag="VC0321"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(335383..335385,335389..335391,335401..335406,
335413..335415,335422..335427,335437..335439,
335521..335526,335578..335583,335650..335655,
335659..335670,335677..335679,335770..335772,
335782..335784,335860..335865)
/gene="tuf"
/locus_tag="VC0321"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(335389..335406,335464..335466,335731..335736,
335740..335742,335845..335853)
/gene="tuf"
/locus_tag="VC0321"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 335491..335523
/gene="tuf"
/locus_tag="VC0321"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 335509..335511
/gene="tuf"
/locus_tag="VC0321"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 335566..335577
/gene="tuf"
/locus_tag="VC0321"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 335572..335628
/gene="tuf"
/locus_tag="VC0321"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 335731..335742
/gene="tuf"
/locus_tag="VC0321"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 335845..335853
/gene="tuf"
/locus_tag="VC0321"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 335956..336216
/gene="tuf"
/locus_tag="VC0321"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 336223..336492
/gene="tuf"
/locus_tag="VC0321"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(336259..336261,336265..336273,336325..336327,
336445..336453,336481..336483)
/gene="tuf"
/locus_tag="VC0321"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 336719..337114
/gene="secE"
/locus_tag="VC0322"
/db_xref="GeneID:2615088"
CDS 336719..337114
/gene="secE"
/locus_tag="VC0322"
/note="'forms a complex with SecY and SecG; SecYEG forms a
protein-conducting channel to which secA binds and
translocates targeted polypeptides across the cytoplasmic
membrane, a process driven by ATP and a proton-motive
force'"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="NP_229976.1"
/db_xref="GI:15640349"
/db_xref="GeneID:2615088"
/translation="MTGWFMKANNAEAPDSSNAADTLKWVATFVLLVAAVVGNYLYGE
LSVVARAAGVIVLIAAALGVAATTTKGKEAIVFARESRMEVRKVVWPTRQETMQTTLI
VLAVSIVMALALWGIDGIMVRLVAFATGV"
misc_feature 336833..337108
/gene="secE"
/locus_tag="VC0322"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK05740"
/db_xref="CDD:180229"
gene 337130..337678
/gene="nusG"
/locus_tag="VC0323"
/db_xref="GeneID:2615089"
CDS 337130..337678
/gene="nusG"
/locus_tag="VC0323"
/note="Modulates Rho-dependent transcription termination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusG"
/protein_id="NP_229977.1"
/db_xref="GI:15640350"
/db_xref="GeneID:2615089"
/translation="MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLV
PTEEVVEMRAGQRRKSERKFFPGYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAP
ITDKEADAILNRLEKASEAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKV
SVSIFGRATPVELEFGQVEKLD"
misc_feature 337133..337675
/gene="nusG"
/locus_tag="VC0323"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 337151..337474
/gene="nusG"
/locus_tag="VC0323"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(337160..337162,337262..337264,337322..337324,
337331..337333,337337..337339,337436..337438,
337460..337462)
/gene="nusG"
/locus_tag="VC0323"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 337502..337669
/gene="nusG"
/locus_tag="VC0323"
/note="NusG contains an NGN domain at its N-terminus and
KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
/db_xref="CDD:240515"
misc_feature order(337538..337552,337559..337561,337595..337597,
337622..337630,337634..337645,337655..337660)
/gene="nusG"
/locus_tag="VC0323"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
misc_feature 337538..337549
/gene="nusG"
/locus_tag="VC0323"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
gene 337809..338237
/gene="rplK"
/locus_tag="VC0324"
/db_xref="GeneID:2615090"
CDS 337809..338237
/gene="rplK"
/locus_tag="VC0324"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="NP_229978.1"
/db_xref="GI:15640351"
/db_xref="GeneID:2615090"
/translation="MAKKVEAYVKLQVAAGMANPSPPVGPALGQRGVNIMEFCKAFNA
RTESLEKGLPIPVVITVYSDRSFTFETKTPPASVLLKKAAGIKSGSARPNTAKVGTIT
DAQIQEIAATKAADMTGADIEAMKRSIAGTARSMGLVVEG"
misc_feature 337809..338234
/gene="rplK"
/locus_tag="VC0324"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:234661"
misc_feature 337833..338228
/gene="rplK"
/locus_tag="VC0324"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(337836..337838,337896..337898,338031..338039,
338049..338051,338070..338072,338145..338147,
338160..338168,338178..338180,338187..338192,
338199..338204,338208..338216)
/gene="rplK"
/locus_tag="VC0324"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(337836..337838,337980..337982,337986..337997,
338007..338009,338013..338018,338148..338153,
338160..338165)
/gene="rplK"
/locus_tag="VC0324"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(337884..337886,337896..337898)
/gene="rplK"
/locus_tag="VC0324"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(338088..338090,338097..338099)
/gene="rplK"
/locus_tag="VC0324"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 338242..338943
/gene="rplA"
/locus_tag="VC0325"
/db_xref="GeneID:2615091"
CDS 338242..338943
/gene="rplA"
/locus_tag="VC0325"
/note="'in Escherichia coli and Methanococcus, this
protein autoregulates expression; the binding site in the
mRNA mimics the binding site in the 23S rRNA'"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="NP_229979.1"
/db_xref="GI:15640352"
/db_xref="GeneID:2615091"
/translation="MAKLTKRMRTIRAKVDVTKEYDINEAVALLKELATAKFVESVDV
AVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQGANAEAAKAAGAELVGMEDLAD
LVKKGEMNFDVVIASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
VRYRNDKNGIIHTTIGKVTFEADQLKENLEALLVALKKAKPSSAKGVFVKKVSISTTM
GAGVAVDQNTLSAQV"
misc_feature 338308..338913
/gene="rplA"
/locus_tag="VC0325"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:238235"
misc_feature order(338347..338355,338362..338364,338368..338370,
338374..338376,338380..338382,338743..338745,
338749..338751,338755..338757,338893..338898,
338902..338904)
/gene="rplA"
/locus_tag="VC0325"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238235"
gene 339213..339701
/gene="rplJ"
/locus_tag="VC0326"
/db_xref="GeneID:2615092"
CDS 339213..339701
/gene="rplJ"
/locus_tag="VC0326"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="NP_229980.1"
/db_xref="GI:15640353"
/db_xref="GeneID:2615092"
/translation="MALNLQDKKAIVAEVNEAASGALSAVVADSRGVQVAAMTNLRKQ
AREAGVYLKVVRNTLARRAVEGTAYECLKDVFVGPTLIGFSNEHPGAAARLFKDFAKE
NKAFEIKAAAFEGVLTDPEVLATLPTYDEAIARLMMCMKEASAGKLVRTIAAVRDQKE
AA"
misc_feature 339222..339686
/gene="rplJ"
/locus_tag="VC0326"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:240223"
misc_feature order(339234..339239,339246..339248,339378..339389,
339396..339398)
/gene="rplJ"
/locus_tag="VC0326"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:240223"
misc_feature order(339480..339482,339549..339551,339597..339599,
339606..339611,339618..339623,339627..339635,
339639..339647,339651..339659,339666..339671,
339675..339680,339684..339686)
/gene="rplJ"
/locus_tag="VC0326"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:240223"
gene 339768..340133
/gene="rplL"
/locus_tag="VC0327"
/db_xref="GeneID:2615093"
CDS 339768..340133
/gene="rplL"
/locus_tag="VC0327"
/note="'present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors'"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="NP_229981.1"
/db_xref="GI:15640354"
/db_xref="GeneID:2615093"
/translation="MSITNEQILDAIAEMSVMQVVELISAMEEKFGVSAAAAVVSGPA
AAAAVEEQTEFNVILAAAGANKVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKE
EAEALKKELEEAGATVEVK"
misc_feature 339774..340127
/gene="rplL"
/locus_tag="VC0327"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(339774..339776,339813..339821,339828..339833,
339840..339842,339849..339851,339894..339896,
339903..339908,339912..339914,339924..339929,
339990..339992,339996..340001,340005..340007,
340011..340016,340056..340061,340065..340067,
340074..340076)
/gene="rplL"
/locus_tag="VC0327"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(339783..339785,339792..339794,339804..339806,
339843..339845,339858..339860)
/gene="rplL"
/locus_tag="VC0327"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(339825..339827,339834..339839,339849..339851,
339858..339860)
/gene="rplL"
/locus_tag="VC0327"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(339963..339968,339975..339980,339987..339989,
340008..340013,340020..340022)
/gene="rplL"
/locus_tag="VC0327"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(339966..339968,339978..339980,339987..339989,
340008..340013,340020..340022)
/gene="rplL"
/locus_tag="VC0327"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(339966..339968,339975..339980,339987..339989)
/gene="rplL"
/locus_tag="VC0327"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 340374..344399
/gene="rpoB"
/locus_tag="VC0328"
/db_xref="GeneID:2615094"
CDS 340374..344399
/gene="rpoB"
/locus_tag="VC0328"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="NP_229982.2"
/db_xref="GI:471237035"
/db_xref="GeneID:2615094"
/translation="MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPE
GQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRL
VIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD
KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSA
EILDIFFEKVNFEVKDQTLMMELVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQ
LEKDGVNFIEVPVEYIVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLE
VLFTNDLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSA
ERYDLSTVGRMKFNSSIGREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGS
SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEG
PNIGLINSLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLT
EEGGFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMG
ANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEE
LIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQ
NMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPN
VGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
DTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLL
ARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFE
AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYD
ENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQ
KVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLP
ASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPE
SFNVLLKEIRSLGINIELEDE"
misc_feature 340374..>343196
/gene="rpoB"
/locus_tag="VC0328"
/note="DNA-directed RNA polymerase subunit beta; Reviewed;
Region: rpoB; PRK00405"
/db_xref="CDD:234749"
misc_feature 340452..>340991
/gene="rpoB"
/locus_tag="VC0328"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl17585"
/db_xref="CDD:248139"
misc_feature <341361..341735
/gene="rpoB"
/locus_tag="VC0328"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:218151"
misc_feature <341643..>342506
/gene="rpoB"
/locus_tag="VC0328"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature 342516..>343196
/gene="rpoB"
/locus_tag="VC0328"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:215994"
misc_feature <343494..344390
/gene="rpoB"
/locus_tag="VC0328"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature order(343536..343538,343542..343544,343617..343625,
343632..343634,343638..343643,344013..344036,
344040..344042)
/gene="rpoB"
/locus_tag="VC0328"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(343590..343592,343596..343598,343602..343604,
343668..343670,343674..343676,343683..343685,
343692..343694,343707..343709,343719..343721,
343929..343931,344010..344012,344034..344042,
344046..344048,344085..344087,344094..344102,
344106..344111,344172..344180,344190..344192,
344196..344201,344205..344207,344211..344228,
344232..344249,344259..344261,344328..344330,
344340..344342,344346..344348,344352..344357,
344361..344363,344367..344378,344382..344384,
344388..344390)
/gene="rpoB"
/locus_tag="VC0328"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(343614..343616,344016..344018)
/gene="rpoB"
/locus_tag="VC0328"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(343617..343619,343656..343658,343737..343739,
343803..343805,343809..343811,343998..344000,
344049..344051)
/gene="rpoB"
/locus_tag="VC0328"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
gene 344504..348709
/locus_tag="VC0329"
/db_xref="GeneID:2615095"
CDS 344504..348709
/locus_tag="VC0329"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="NP_229983.1"
/db_xref="GI:15640356"
/db_xref="GeneID:2615095"
/translation="MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETI
NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRM
GHIELASPVAHIWFLKSLPSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQML
TEEEYLDRLEEWGDEFTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLT
KRLKLVEAFVASGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
NRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGLAT
TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVL
GLYYMTREKINAKGEGMYLTGPAEAEKAYRTKTAELHARVKVRITETIKHENGKLTTE
TKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQISNLLNEAYRKLGLKDTVIFADQI
MYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEEVREIQEQFQSGLVTAGERYNKV
IDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQL
AGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTR
RLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGTDEV
LIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGEA
VGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKLHNAKFVTNKDGK
LVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITE
VAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDV
LIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFE
ARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIE
RGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRK
CTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQG
PSAEQATDNLAALLNAGFSSDDE"
misc_feature 344543..345529
/locus_tag="VC0329"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:218370"
misc_feature 344561..347062
/locus_tag="VC0329"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:223164"
misc_feature 345206..346036
/locus_tag="VC0329"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:214767"
misc_feature 345968..346435
/locus_tag="VC0329"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:218361"
misc_feature 346520..346795
/locus_tag="VC0329"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:218372"
misc_feature 346799..>347656
/locus_tag="VC0329"
/note="RNA polymerase Rpb1, domain 5; Region:
RNA_pol_Rpb1_5; pfam04998"
/db_xref="CDD:147266"
misc_feature 347222..>347329
/locus_tag="VC0329"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 347240..347242
/locus_tag="VC0329"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature 347897..>347953
/locus_tag="VC0329"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature <348146..348589
/locus_tag="VC0329"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(348431..348433,348476..348481)
/locus_tag="VC0329"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(348521..348523,348539..348541,348557..348559,
348566..348571,348581..348583)
/locus_tag="VC0329"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(348820..349314)
/locus_tag="VC0330"
/db_xref="GeneID:2615096"
CDS complement(348820..349314)
/locus_tag="VC0330"
/note="binds specifically to the major sigma factor sigma
70; active in stationary phase"
/codon_start=1
/transl_table=11
/product="anti-RNA polymerase sigma 70 factor"
/protein_id="NP_229984.1"
/db_xref="GI:15640357"
/db_xref="GeneID:2615096"
/translation="MVMLRKFKNVQEQWGGSSDIIDHWLDKRQHVIVEYCKLAALQPC
TTKAAVSELPSPQALLYFCQELVDYISEGHFKIYDMVMDKWHATGFKATDEINQVYGK
IVATTEPLLNFNDQYATVTEYDELLDLDRDLSKVGEVLELRFSLEDQLIQLIADSLAV
PPGA"
misc_feature complement(348823..349308)
/locus_tag="VC0330"
/note="Regulator of sigma D [Transcription]; Region: Rsd;
COG3160"
/db_xref="CDD:225702"
gene 349459..350268
/gene="nudC"
/locus_tag="VC0331"
/db_xref="GeneID:2615097"
CDS 349459..350268
/gene="nudC"
/locus_tag="VC0331"
/note="can catalyze hydrolysis of broad range of
dinucleotide pyrophosphates but prefers reduced form of
NADH; requires divalent metal ions such as magnesium and
manganese and produces two mononucleoside 5'-phosphates"
/codon_start=1
/transl_table=11
/product="NADH pyrophosphatase"
/protein_id="NP_229985.1"
/db_xref="GI:15640358"
/db_xref="GeneID:2615097"
/translation="MIRLQAIRRSRVEKSDGKNAYWCVVSGSDLWLVDGQIPYGSAEQ
WDLPQEKAILVDRYQNSPVYWLNAADIEQDRPLTSLRELLGVDEALFLAASKAVQYGH
MSQTIRFCPQCGGRNYLNHQQLAMQCHDCRTLHYPRIFPCIIVAVRKQQQILLAQHPR
HRNGMYTVIAGFVEVGETLEQCVAREVLEETGIVVTNIRYFGSQPWAFPSSMMMAFLA
DYDTGELKPDYSELSDANWFGIENLPPVAPRGTIARALIEQTLADIAQDQA"
misc_feature 349480..350250
/gene="nudC"
/locus_tag="VC0331"
/note="NADH pyrophosphatase; Reviewed; Region: nudC;
PRK00241"
/db_xref="CDD:178944"
misc_feature 349513..349767
/gene="nudC"
/locus_tag="VC0331"
/note="NADH pyrophosphatase-like rudimentary NUDIX domain;
Region: NUDIX-like; pfam09296"
/db_xref="CDD:204191"
misc_feature 349780..349866
/gene="nudC"
/locus_tag="VC0331"
/note="NADH pyrophosphatase zinc ribbon domain; Region:
zf-NADH-PPase; pfam09297"
/db_xref="CDD:204192"
misc_feature 349879..350244
/gene="nudC"
/locus_tag="VC0331"
/note="NADH pyrophosphatase, a member of the Nudix
hydrolase superfamily, catalyzes the cleavage of NADH into
reduced nicotinamide mononucleotide (NMNH) and AMP. Like
other members of the Nudix family, it requires a divalent
cation, such as Mg2+ or Mn2+, for...; Region:
NADH_pyrophosphatase; cd03429"
/db_xref="CDD:72887"
misc_feature order(349882..349884,349966..349974,350074..350076,
350083..350085,350089..350091,350095..350097)
/gene="nudC"
/locus_tag="VC0331"
/note="putative NADH binding site [chemical binding];
other site"
/db_xref="CDD:72887"
misc_feature order(349969..349974,349978..349980,350014..350016,
350023..350028,350074..350076,350083..350085,
350089..350091,350095..350097)
/gene="nudC"
/locus_tag="VC0331"
/note="putative active site [active]"
/db_xref="CDD:72887"
misc_feature 349969..350037
/gene="nudC"
/locus_tag="VC0331"
/note="nudix motif; other site"
/db_xref="CDD:72887"
misc_feature order(350014..350016,350023..350028,350149..350151)
/gene="nudC"
/locus_tag="VC0331"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:72887"
gene 350511..351590
/gene="hemE"
/locus_tag="VC0332"
/db_xref="GeneID:2615068"
CDS 350511..351590
/gene="hemE"
/locus_tag="VC0332"
/EC_number="4.1.1.37"
/note="catalyzes the formation of coproporphyrinogen from
uroporphyrinogen III"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen decarboxylase"
/protein_id="NP_229986.1"
/db_xref="GI:15640359"
/db_xref="GeneID:2615068"
/translation="MGITMTELKNDRYLRALLKQPVDYTPVWMMRQAGRYLPEYRATR
AQAGDFMALCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPV
FERPITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMV
EGGSSKAFTKIKKMMYSEPTVLHALLDKLADSVISYLNAQIKAGAQAVMVFDTWGGVL
TPRDYQQFSLQYMHKIVDGLIRENEGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWT
INIADAKARVGDKVALQGNMDPSILYAPAPRIREEVASILAGFGQGGTGHVFNLGHGI
HLDVPPENAGVFVEAVHELSKPYHP"
misc_feature 350544..351566
/gene="hemE"
/locus_tag="VC0332"
/note="methyltransferase, MtaA/CmuA family; Region:
mtaA_cmuA; TIGR01463"
/db_xref="CDD:130530"
misc_feature 350550..351566
/gene="hemE"
/locus_tag="VC0332"
/note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate side
chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction...; Region: URO-D;
cd00717"
/db_xref="CDD:48141"
misc_feature order(350598..350615,350628..350630,350640..350642,
350658..350660,350739..350759,350793..350795,
350808..350810,350952..350954,350982..350984,
351000..351002,351141..351143,351147..351152,
351264..351266,351504..351506)
/gene="hemE"
/locus_tag="VC0332"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48141"
misc_feature order(350601..350603,350613..350615,350751..350753,
350982..350984,351147..351149,351504..351506)
/gene="hemE"
/locus_tag="VC0332"
/note="active site"
/db_xref="CDD:48141"
gene 351596..352324
/locus_tag="VC0333"
/db_xref="GeneID:2615069"
CDS 351596..352324
/locus_tag="VC0333"
/note="similar to GB:X66592 PID:45394; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="NP_229987.1"
/db_xref="GI:15640360"
/db_xref="GeneID:2615069"
/translation="MKSVCRSDAFHILSPTVLYFGNPDRKTKRIMMKTKDRIVHAALE
LFNQQGERNITTNHIAAHIEISPGNLYYHFRNKQEIVRDIFALYSAELIERFTPLQGQ
YESLSLLKHYLDSIFTLMWKYRFFYANLPEILQRDEELHADYIRVQERLQTNLIDIVR
NFVNLQLLELNEDEMPKLVRTLHLIASSWLGYQSAMSHKTQITEEVIHQGMLQMISVV
KPCATKAGREQLQLLEEGVRAMHA"
misc_feature 351662..352189
/locus_tag="VC0333"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 351707..351847
/locus_tag="VC0333"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature 351851..352288
/locus_tag="VC0333"
/note="Bacterial transcriptional repressor; Region: TetR;
pfam13972"
/db_xref="CDD:206142"
gene 352411..353370
/locus_tag="VC0334"
/db_xref="GeneID:2615070"
CDS 352411..353370
/locus_tag="VC0334"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229988.1"
/db_xref="GI:15640361"
/db_xref="GeneID:2615070"
/translation="MDYDVFNGDADGILSLVQWRLVHPKSTQLVTGVKRDIALLERLT
VTAGDELVVLDISMAKNQLGLQRALQAGAHVFYADHHQPGDIPAHSALQAHIDTDANL
CTALIIDRLLKGRFRDWAITAAFGDNLHRVAHTLAEEAGFDAAQTDALCELGTLINYN
GYGRTVSELHFAPDTLYQTLLAYQTPWAVLADLNSPFYQLRSAYQQDFAFALAQPAYY
RSSSVTVVILPDCAAAQRVSGAFANHLANQDMQRAHLIVTYADEQHYTLSLRAPLSDK
RGAGALCAQFPSGGGRESAGGINQLPYALLDNVIAVVEAFYAS"
gene complement(353367..354515)
/locus_tag="VC0335"
/db_xref="GeneID:2615071"
CDS complement(353367..354515)
/locus_tag="VC0335"
/note="similar to SP:P37690 PID:466751 GB:U00096
PID:1790042; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="NlpD-like protein"
/protein_id="NP_229989.1"
/db_xref="GI:15640362"
/db_xref="GeneID:2615071"
/translation="MTATDPHAIFSDFLGKTLTRRLLVCLLFMVSPSLFAATQQELTG
VKSEISRQQQSLAEQQKSLDQLQQALKQQELGINSIENQITKTKNDLENANRNIAQLN
SNIQALETQKQQQADKLERLLQTYYLTKRSLTNGQFFHRSADEDRISQYYQHLAKSRA
QAIEALEKTQADLNASQQQRQAEREQIEKLLAEQTQQRDKLAKTQSERKQTVKKIESS
ISGDKVYLAELQRNETRLKAEIAKAAKRNAVLMNGIASQRGKLPWPLKGRVLHNFGER
QTGQIDWKGLVIDANYGQEVKAVYPGTIVFAEYLRGYGLVVLLDHGKGDMTLYGFNQT
LLKKEGDKVIAGETIALAGDTGGQSRPALYFEIRRNSRAENPSQWLQR"
misc_feature complement(353370..354515)
/locus_tag="VC0335"
/note="Membrane-bound metallopeptidase [Cell division and
chromosome partitioning]; Region: COG4942"
/db_xref="CDD:227278"
misc_feature complement(353388..353669)
/locus_tag="VC0335"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:216566"
gene complement(354684..356216)
/locus_tag="VC0336"
/db_xref="GeneID:2615072"
CDS complement(354684..356216)
/locus_tag="VC0336"
/EC_number="5.4.2.1"
/note="catalyzes the interconversion of 2-phosphoglycerate
and 3-phosphoglycerate"
/codon_start=1
/transl_table=11
/product="phosphoglyceromutase"
/protein_id="NP_229990.1"
/db_xref="GI:15640363"
/db_xref="GeneID:2615072"
/translation="MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT
LISASGMDVGLPDGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAI
DKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRS
AEASLKRFQDLFAKLGKGRIASIVGRYYAMDRDNNWDRVEKAYDLLTLAQGEFTYDSA
VEALQAAYAREENDEFVKATEIRAAGQESAAMQDGDALLFMNYRADRARQITRTFVPD
FAGFSRKAFPALDFVMLTQYAADIPLQCAFGPASLENTYGEWLSKAGKTQLRISETEK
YAHVTFFFNGGVENEFPGEERQLVASPKVATYDLQPEMSSKELTDKLVAAIKSGKYDA
IICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMI
DPETGGVHTAHTSLPVPLIYVGNKAISLKEGGKLSDLAPTMLALSDLDIPADMSGQVL
YS"
misc_feature complement(354693..356216)
/locus_tag="VC0336"
/note="phosphoglyceromutase; Provisional; Region:
PRK05434"
/db_xref="CDD:235463"
misc_feature complement(354690..356213)
/locus_tag="VC0336"
/note="Phosphoglyceromutase [Carbohydrate transport and
metabolism]; Region: GpmI; COG0696"
/db_xref="CDD:223768"
gene complement(356359..357300)
/locus_tag="VC0337"
/db_xref="GeneID:2615073"
CDS complement(356359..357300)
/locus_tag="VC0337"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229991.1"
/db_xref="GI:15640364"
/db_xref="GeneID:2615073"
/translation="MLNGILSALITPNRKDDAMGYEWLALAAACLWAIASLLSITPAK
HLGSFAYSRWRMGCTSVILTTIALFSGGWSTVHSSAIPAMMLSGFIGIFIGDTALFAC
LNRMGPRQSGLLFSCHAVFSAVLGYFLFSESMTKQELFGSTLVFSGVLMAIFFGRRGQ
TGPSLDSINGSVWVGIGLGLTAALCQALGGIIAKPVMQTEIDPIAASAMRMITAFAAH
SLLRLTGARIARPTQIITLNIFLVTALNGFIAMAVGMTLILYALREGNVGMVALLSST
TPIMLLPLLWIYTKQCPNRYAWLGAILAVGGTSLLVS"
misc_feature complement(356839..357171)
/locus_tag="VC0337"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature complement(356365..356751)
/locus_tag="VC0337"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(357398..358834)
/locus_tag="VC0338"
/db_xref="GeneID:2615074"
CDS complement(357398..358834)
/locus_tag="VC0338"
/note="similar to GB:AE000666; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="transporter"
/protein_id="NP_229992.1"
/db_xref="GI:15640365"
/db_xref="GeneID:2615074"
/translation="MSQEGKPMPQLERGLLVKLLICFLLPLGVLLMPIDAIPIQDLTL
VQHRLLAIFLLAALLWVLEPVPVFATSILIIALELVMISDKGLHGFRVPDPHHPLGEL
LKYTDIFSAFSSPIIILFMGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLGLML
ITSVFSMFMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIGT
PPNAIALQYLTGENSIDFLSWMMMGLPFVLVQLTIAWFLLQKLFPSSQATMTLKLKGE
FQRGWRAMLVYITFALTIVLWMTTSWHGMNTYVVAIIPLAVFTLTGIMGKEELKQINW
DVLWLVAGGIAIGIGLEQTGLAQALAHSIDYQSLSPMLIVIALSLVCWLMANFMSNTA
TANLIMPIAAAIGTSMSSLEQVGGLQALLVVVAFSASLGMILPVSTPPNSLAYSTGLI
ESKDMAKTGLVIGGIGLGIVYLMVFLLG"
misc_feature complement(357461..358648)
/locus_tag="VC0338"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:30819"
misc_feature complement(357464..358531)
/locus_tag="VC0338"
/note="Permease SLC13 (solute carrier 13). The
sodium/dicarboxylate cotransporter NaDC-1 has been shown
to translocate Krebs cycle intermediates such as
succinate, citrate, and alpha-ketoglutarate across plasma
membranes rabbit, human, and rat kidney. It is...; Region:
SLC13_permease; cd01115"
/db_xref="CDD:73247"
misc_feature complement(order(357545..357595,357611..357619,
357671..357718,357785..357841,357884..357904,
357905..357919,357941..357979,358073..358117,
358175..358246,358256..358264,358274..358318,
358322..358372,358442..358495))
/locus_tag="VC0338"
/note="transmembrane helices; other site"
/db_xref="CDD:73247"
gene complement(359021..359878)
/gene="psd"
/locus_tag="VC0339"
/db_xref="GeneID:2615075"
CDS complement(359021..359878)
/gene="psd"
/locus_tag="VC0339"
/EC_number="4.1.1.65"
/note="catalyzes the decarboxylation of
phosphatidyl-L-serine to phosphatidylethanoleamine"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="NP_229993.1"
/db_xref="GI:15640366"
/db_xref="GeneID:2615075"
/translation="MDKIKVGLQYWIPQHALTRLVGKLASARAGSLTTAIIRWFIKQY
NVNMDEALHSDPTHFKTFNEFFVRELKAGVRPIAEGEKVITHPADACVSQFGAIEYGK
LIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIELVWAGTVTP
PRGNTVYRWDYPANGNQAVVLKKGEEMGRFKLGSTVINLFAKQAIRFDDSMALGAPTR
MGEPYAHQA"
misc_feature complement(359024..359878)
/gene="psd"
/locus_tag="VC0339"
/note="phosphatidylserine decarboxylase; Reviewed; Region:
psd; PRK00044"
/db_xref="CDD:234591"
gene complement(359871..361034)
/locus_tag="VC0340"
/db_xref="GeneID:2615076"
CDS complement(359871..361034)
/locus_tag="VC0340"
/note="circularly permuted GTPase; has the pattern
G4-G1-G3 as opposed to other GTPases; indispensable for
growth in Escherichia coli and Bacillus subtilis;
interacts strongly with 30S ribosome which stimulates
GTPase activity"
/codon_start=1
/transl_table=11
/product="ribosome-associated GTPase"
/protein_id="NP_229994.1"
/db_xref="GI:15640367"
/db_xref="GeneID:2615076"
/translation="MTKKKKLTHGQVRRVRNNQHKKLKQEESIVWDEALLGSAQPGLV
ITRFGQHADIEDPVTGEIHRCNLRRGIESLVSGDNVLWRPGAETLAGISGVVEAVEAR
SSVLVRPDYYDGLKPVAANVDQMVIVSSVLPELSLNIIDRYLIASETLGIAPLIVLNK
IDLLSPELREQYSTWLNDYRAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVG
KSSLVNALLPELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLW
HLETDDVTKAYVEFRPYLGGCKFRDCKHGDDPGCLLREAVSKGEISALRFDNYHRIVQ
SMTENKANRQYSRSKKPICKSKLLASLEHLLTEGAIFSNISRPSPLYWNVNHG"
misc_feature complement(359985..361028)
/locus_tag="VC0340"
/note="GTPase RsgA; Reviewed; Region: PRK12288"
/db_xref="CDD:183406"
misc_feature complement(360711..360917)
/locus_tag="VC0340"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature complement(order(360843..360845,360876..360878,
360900..360902))
/locus_tag="VC0340"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature complement(360033..360677)
/locus_tag="VC0340"
/note="Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases; Region:
YjeQ_EngC; cd01854"
/db_xref="CDD:206747"
misc_feature complement(order(360039..360041,360051..360053,
360060..360062,360171..360173,360177..360179,
360189..360191,360483..360485,360588..360593,
360600..360605,360609..360614,360621..360626))
/locus_tag="VC0340"
/note="GTPase/Zn-binding domain interface [polypeptide
binding]; other site"
/db_xref="CDD:206747"
misc_feature complement(order(360372..360389,360462..360467,
360546..360551,360555..360560))
/locus_tag="VC0340"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206747"
misc_feature complement(360549..360560)
/locus_tag="VC0340"
/note="G4 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360459..360467)
/locus_tag="VC0340"
/note="G5 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360375..360398)
/locus_tag="VC0340"
/note="G1 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360273..360296)
/locus_tag="VC0340"
/note="Switch I region; other site"
/db_xref="CDD:206747"
misc_feature complement(360285..360287)
/locus_tag="VC0340"
/note="G2 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360228..360239)
/locus_tag="VC0340"
/note="G3 box; other site"
/db_xref="CDD:206747"
misc_feature complement(360225..360233)
/locus_tag="VC0340"
/note="Switch II region; other site"
/db_xref="CDD:206747"
gene 361157..361702
/locus_tag="VC0341"
/db_xref="GeneID:2615077"
CDS 361157..361702
/locus_tag="VC0341"
/note="3'-5' exoribonuclease specific for small
oligoribonuclotides"
/codon_start=1
/transl_table=11
/product="oligoribonuclease"
/protein_id="NP_229995.1"
/db_xref="GI:15640368"
/db_xref="GeneID:2615077"
/translation="MSFSDQNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGP
VIAIHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKS
PICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRWQPEVLKEFSKTGSHLA
LDDIRESIAELQFYRKAVFKI"
misc_feature 361178..361693
/locus_tag="VC0341"
/note="DEDDh 3'-5' exonuclease domain of oligoribonuclease
and similar proteins; Region: Orn; cd06135"
/db_xref="CDD:99838"
misc_feature order(361190..361201,361205..361207,361475..361480,
361484..361492,361628..361630,361643..361645)
/locus_tag="VC0341"
/note="putative active site [active]"
/db_xref="CDD:99838"
misc_feature order(361190..361201,361205..361207,361475..361480,
361484..361489,361628..361630,361643..361645)
/locus_tag="VC0341"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:99838"
misc_feature order(361190..361192,361196..361198,361490..361492,
361628..361630,361643..361645)
/locus_tag="VC0341"
/note="catalytic site [active]"
/db_xref="CDD:99838"
misc_feature order(361259..361261,361484..361489,361496..361498,
361505..361507,361544..361549,361553..361555,
361562..361564,361571..361573,361586..361591,
361682..361684,361688..361693)
/locus_tag="VC0341"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99838"
gene 361861..361936
/gene="tRNA-Gly-4"
/locus_tag="VCt018"
/db_xref="GeneID:2615078"
tRNA 361861..361936
/gene="tRNA-Gly-4"
/locus_tag="VCt018"
/product="tRNA-Gly"
/db_xref="GeneID:2615078"
gene 361971..362046
/gene="tRNA-Gly-5"
/locus_tag="VCt019"
/db_xref="GeneID:2615079"
tRNA 361971..362046
/gene="tRNA-Gly-5"
/locus_tag="VCt019"
/product="tRNA-Gly"
/db_xref="GeneID:2615079"
gene 362203..362278
/gene="tRNA-Gly-6"
/locus_tag="VCt020"
/db_xref="GeneID:2615080"
tRNA 362203..362278
/gene="tRNA-Gly-6"
/locus_tag="VCt020"
/product="tRNA-Gly"
/db_xref="GeneID:2615080"
gene 362318..362394
/gene="tRNA-Met-4"
/locus_tag="VCt021"
/db_xref="GeneID:2615081"
tRNA 362318..362394
/gene="tRNA-Met-4"
/locus_tag="VCt021"
/product="tRNA-Met"
/db_xref="GeneID:2615081"
gene 362429..362504
/gene="tRNA-Gly-7"
/locus_tag="VCt022"
/db_xref="GeneID:2615082"
tRNA 362429..362504
/gene="tRNA-Gly-7"
/locus_tag="VCt022"
/product="tRNA-Gly"
/db_xref="GeneID:2615082"
gene 362691..362767
/gene="tRNA-Met-5"
/locus_tag="VCt023"
/db_xref="GeneID:2615052"
tRNA 362691..362767
/gene="tRNA-Met-5"
/locus_tag="VCt023"
/product="tRNA-Met"
/db_xref="GeneID:2615052"
gene 362810..362886
/gene="tRNA-Met-6"
/locus_tag="VCt024"
/db_xref="GeneID:2615053"
tRNA 362810..362886
/gene="tRNA-Met-6"
/locus_tag="VCt024"
/product="tRNA-Met"
/db_xref="GeneID:2615053"
gene 362929..363005
/gene="tRNA-Met-7"
/locus_tag="VCt025"
/db_xref="GeneID:2615054"
tRNA 362929..363005
/gene="tRNA-Met-7"
/locus_tag="VCt025"
/product="tRNA-Met"
/db_xref="GeneID:2615054"
gene complement(363575..364684)
/locus_tag="VC0342"
/db_xref="GeneID:2615055"
CDS complement(363575..364684)
/locus_tag="VC0342"
/note="similar to GB:U14003 SP:P39288 PID:537007 GB:U00096
PID:1790608; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="(Fe-S)-binding protein"
/protein_id="NP_229996.1"
/db_xref="GI:15640369"
/db_xref="GeneID:2615055"
/translation="MDYQQLANQIKQWAIELGFEKVGICDVDLSEHEPALQAWLDAGY
HGEMDWMARHGMMRARPAELLPGTLRVISARINYLPPQAQFASNLSDPNQAYISRYAL
GRDYHKLVRNQLKKLGEKIEQEVGKLGYRPFVDSAPILERPLAQKAGLGWTGKHSLIL
DKENGSWFFLGELLVDIPLPVDEPSENQCGKCTACITSCPTNAIVAEGVVDARRCVSY
LTIEYSGVIPLEFRRAMGNRIYGCDDCQLVCPWNRFAPLTQQSDFHRRQSLNNADLVV
LFEWDEATFLKNMEGSAIRRIGHQQWRRNLIIAMGNAPYSPRIIDTLQRHLGQSELLD
EHIHWALEEQTQKTATPRQHARLIRIIEKGLPRDA"
misc_feature complement(363653..364657)
/locus_tag="VC0342"
/note="epoxyqueuosine reductase; Region: TIGR00276"
/db_xref="CDD:213520"
misc_feature complement(364277..364513)
/locus_tag="VC0342"
/note="Domain of unknown function (DUF1730); Region:
DUF1730; pfam08331"
/db_xref="CDD:149403"
gene 364889..365353
/locus_tag="VC0343"
/db_xref="GeneID:2615056"
CDS 364889..365353
/locus_tag="VC0343"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_229997.2"
/db_xref="GI:471237036"
/db_xref="GeneID:2615056"
/translation="MNSKIFSLKDEQATIELGRALALICSQQTTLYLHXDLGAGKTTF
SRGFIRALGHQGNVKSPTYTLVEPYQLGMWQVYHFDLYRLADPEELEFMGIRDYFSAD
AICLVEWPEKGHGLLPNADLDIDLRYDGDQRVATLTANNHYGCDLLSQLELC"
misc_feature 364889..365341
/locus_tag="VC0343"
/note="Uncharacterized P-loop hydrolase UPF0079; Region:
UPF0079; cl00520"
/db_xref="CDD:241921"
gene 365320..367065
/locus_tag="VC0344"
/db_xref="GeneID:2615057"
CDS 365320..367065
/locus_tag="VC0344"
/note="similar to SP:P26365 GB:Z11831 PID:304914 PID:42068
PID:537010; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="N-acetylmuramoyl-L-alanine amidase"
/protein_id="NP_229998.1"
/db_xref="GI:15640371"
/db_xref="GeneID:2615057"
/translation="MRPFESVGVMLNVSRFVFLLFGFVLLAIAPQTWANVLEGVRVWP
SPDETRVVLDVKSEVDYSYFTLSSPERLVVDLKQSTSRAKLPVNVTESGILSKVRASS
PPEKSTFRLVFELKQKTTPTLFKLAPTPGGQYGHRLVIDMPHGKVSESSSASTPSSPA
QVSKDASQLLGNDDIVVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPG
MKAVLTRRGDYFVNLNKRTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANT
EIARWVENHEQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILRE
MGKVAHLHKTEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALA
TAIVQYFEDNPPEGTLFANRGKAQKHKVQRGESIGLIANQYGVSVDALKKANNLKSST
ISVGQLLTIPASSAPNPVPVPVMANPVETETITHVVKTGDFLGKLATTYKVSVASIKK
ENNLKSDTLVLGQKLKITVSLKDKPLRKHKVQRGEFLSKIADQYNVSVDSIRQANQLR
TDQLLVGQQLIIPNK"
misc_feature 365437..365742
/locus_tag="VC0344"
/note="AMIN domain; Region: AMIN; pfam11741"
/db_xref="CDD:204728"
misc_feature 365845..366507
/locus_tag="VC0344"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature order(365866..365868,365911..365913,366073..366075,
366412..366414)
/locus_tag="VC0344"
/note="active site"
/db_xref="CDD:119407"
misc_feature order(365866..365868,365911..365913,366073..366075)
/locus_tag="VC0344"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
misc_feature 366565..366696
/locus_tag="VC0344"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 366604..366918
/locus_tag="VC0344"
/note="FOG: LysM repeat [Cell envelope biogenesis, outer
membrane]; Region: LytE; COG1388"
/db_xref="CDD:31578"
misc_feature 366763..366894
/locus_tag="VC0344"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 366928..367053
/locus_tag="VC0344"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
gene 367072..369033
/gene="mutL"
/locus_tag="VC0345"
/db_xref="GeneID:2615058"
CDS 367072..369033
/gene="mutL"
/locus_tag="VC0345"
/note="This protein is involved in the repair of
mismatches in DNA. It is required for dam-dependent
methyl-directed DNA mismatch repair. Promotes the
formation of a stable complex between two or more
DNA-binding proteins in an ATP-dependent manner without
itself being part of a final effector complex"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein"
/protein_id="NP_229999.1"
/db_xref="GI:15640372"
/db_xref="GeneID:2615058"
/translation="MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
DLEKGGAKLIRIRDNGSGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASI
SSVSRLTLTSRTVAQEEAWSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKF
LRTEKTEFTHIDELLKRIALSRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGN
PFVQHMLRIELEHQGLKLHGWITTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYE
TSLRVDQFATYVLFIELDPHQVDVNVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQ
VMAPTINEGAFHLPHCAEEVNPPVVPMIDTTQQERVWQAVQNTPDYPRKAPRDNDRDE
SDNPQVRERAVSNPWVASPKTASTGKERYGSASVSKKEAAVYQTLMQTPDLSDEEPST
ASTIVSSIEAVKANIAIEKLGKAIQVVAGQYLLMSSPQGCVLISLYQAQQLKLRGLLN
AQHGALKAQPLLVPLALKLNESEWQVAQRHSSALLQLGIELKSRTNHSIMVMAVPQPL
RQQNLQQLLPDLLSYAASCSESQALSHQALADWLTQRIVVEKRDYTLAEAIGLIAELE
QLWQGNLPLQDPHFITLVDFSASITALHS"
misc_feature 367072..369006
/gene="mutL"
/locus_tag="VC0345"
/note="DNA mismatch repair protein; Reviewed; Region:
mutL; PRK00095"
/db_xref="CDD:234630"
misc_feature 367138..>367377
/gene="mutL"
/locus_tag="VC0345"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(367156..367158,367168..367170,367177..367179,
367237..367239,367243..367245,367249..367251,
367255..367260,367357..367368)
/gene="mutL"
/locus_tag="VC0345"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 367168..367170
/gene="mutL"
/locus_tag="VC0345"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(367249..367251,367255..367257,367357..367359,
367363..367365)
/gene="mutL"
/locus_tag="VC0345"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 367693..368058
/gene="mutL"
/locus_tag="VC0345"
/note="MutL_Trans_MutL: transducer domain, having a
ribosomal S5 domain 2-like fold, found in proteins similar
to Escherichia coli MutL. EcMutL belongs to the DNA
mismatch repair (MutL/MLH1/PMS2) family. This transducer
domain is homologous to the second...; Region:
MutL_Trans_MutL; cd03482"
/db_xref="CDD:239564"
misc_feature 367987..367989
/gene="mutL"
/locus_tag="VC0345"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:239564"
misc_feature 368479..368904
/gene="mutL"
/locus_tag="VC0345"
/note="MutL C terminal dimerisation domain; Region:
MutL_C; pfam08676"
/db_xref="CDD:219965"
gene 369030..369977
/gene="miaA"
/locus_tag="VC0346"
/db_xref="GeneID:2615059"
CDS 369030..369977
/gene="miaA"
/locus_tag="VC0346"
/EC_number="2.5.1.75"
/note="IPP transferase; isopentenyltransferase; involved
in tRNA modification; in Escherichia coli this enzyme
catalyzes the addition of a delta2-isopentenyl group from
dimethylallyl diphosphate to the N6-nitrogen of adenosine
adjacent to the anticodon of tRNA species that read codons
starting with uracil; further tRNA modifications may
occur; mutations in miaA result in defects in translation
efficiency and fidelity"
/codon_start=1
/transl_table=11
/product="tRNA delta(2)-isopentenylpyrophosphate
transferase"
/protein_id="NP_230000.1"
/db_xref="GI:15640373"
/db_xref="GeneID:2615059"
/translation="MTQKLPLALFLMGPTASGKTDLAIRLRQKYPVEIISVDSALIYR
GMDIGTAKPDAQELALAPHRLIDILDPSEAYSAADFRRDALKEMADIVAQGKIPLLVG
GTMLYFKALLEGLSPLPAADPVIRQQIELEAEKLGWQALHDQLQQIDPVSAQRIHPND
PQRLSRALEVYRISGKTLTELTQTKGEAIPYRVLQFAIAPKERAELHRRIELRFEKMV
ESGFEEEVKALYARDDLHPDLPSIRCVGYRQMWDYLDGHGTLDEAIYRGICATRQLAK
RQITWLRSWDDLTWLDSENVDQAVETLSNAIASNEISCV"
misc_feature 369039..369959
/gene="miaA"
/locus_tag="VC0346"
/note="tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis]; Region:
MiaA; COG0324"
/db_xref="CDD:223401"
misc_feature 369039..369956
/gene="miaA"
/locus_tag="VC0346"
/note="tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed; Region: miaA; PRK00091"
/db_xref="CDD:234626"
gene 370149..370412
/gene="hfq"
/locus_tag="VC0347"
/db_xref="GeneID:2615060"
CDS 370149..370412
/gene="hfq"
/locus_tag="VC0347"
/note="Stimulates the elongation of poly(A) tails"
/codon_start=1
/transl_table=11
/product="RNA-binding protein Hfq"
/protein_id="NP_230001.1"
/db_xref="GI:15640374"
/db_xref="GeneID:2615060"
/translation="MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
LLKNTVNQMVYKHAISTVVPARPVSHHSGDRPASDRPAEKSEE"
misc_feature 370164..370340
/gene="hfq"
/locus_tag="VC0347"
/note="bacterial Hfq-like; Region: Hfq; cd01716"
/db_xref="CDD:212463"
misc_feature order(370164..370172,370179..370181,370224..370238,
370260..370268,370272..370277,370296..370340)
/gene="hfq"
/locus_tag="VC0347"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:212463"
misc_feature order(370212..370232,370236..370289)
/gene="hfq"
/locus_tag="VC0347"
/note="Sm1 motif; other site"
/db_xref="CDD:212463"
misc_feature order(370221..370223,370233..370247,370284..370286,
370302..370304,370326..370331,370335..370337)
/gene="hfq"
/locus_tag="VC0347"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:212463"
misc_feature 370299..370334
/gene="hfq"
/locus_tag="VC0347"
/note="Sm2 motif; other site"
/db_xref="CDD:212463"
gene 370445..371734
/locus_tag="VC0348"
/db_xref="GeneID:2615061"
CDS 370445..371734
/locus_tag="VC0348"
/note="involved in modulation of proteins HflK and HflC;
part of the hflA locus (high frequency of lysogenization)
which governs the lysis-lysogeny decision of bacteriophage
lambda by controlling stability of the phage cII protein"
/codon_start=1
/transl_table=11
/product="GTPase HflX"
/protein_id="NP_230002.1"
/db_xref="GI:15640375"
/db_xref="GeneID:2615061"
/translation="MFDRYEAGERAVLVHVNFTQRGEWEDLSECKMLISSAGVTTLHV
VTGSRQTPHPKYFVGEGKAQEIAEAVQMHVANVVIFNHALSPAQERNLERLCQCRVID
RTGLILDIFAQRARTHEGKLQVELAQLRHISTRLIRGWTHLERQKGGIGLRGPGETQL
ETDRRLLRERIKAILRRLEKVAKQREQGRRARSRAEIPTISLVGYTNAGKSTLFNRIT
EAGVYAADQLFATLDPTLRKIDLVDVGPAVLADTVGFIRHLPHDLVAAFKATLQETQE
ADILLHVVDASDERFRENIQAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDE
GVPRVVWISAMQGAGTELLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQ
EEYDPEGNLLITVRMQQVDWARLEKREQADLCDFIVT"
misc_feature 370445..371728
/locus_tag="VC0348"
/note="GTPase HflX; Provisional; Region: PRK11058"
/db_xref="CDD:182934"
misc_feature 370517..370780
/locus_tag="VC0348"
/note="GTP-binding GTPase N-terminal; Region: GTP-bdg_N;
pfam13167"
/db_xref="CDD:205348"
misc_feature 370913..371527
/locus_tag="VC0348"
/note="HflX GTPase family; Region: HflX; cd01878"
/db_xref="CDD:206666"
misc_feature 371054..371077
/locus_tag="VC0348"
/note="G1 box; other site"
/db_xref="CDD:206666"
misc_feature order(371063..371065,371069..371080,371393..371398,
371402..371404,371471..371479)
/locus_tag="VC0348"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206666"
misc_feature 371117..371158
/locus_tag="VC0348"
/note="Switch I region; other site"
/db_xref="CDD:206666"
misc_feature 371147..371149
/locus_tag="VC0348"
/note="G2 box; other site"
/db_xref="CDD:206666"
misc_feature 371195..371206
/locus_tag="VC0348"
/note="G3 box; other site"
/db_xref="CDD:206666"
misc_feature 371204..371275
/locus_tag="VC0348"
/note="Switch II region; other site"
/db_xref="CDD:206666"
misc_feature 371393..371404
/locus_tag="VC0348"
/note="G4 box; other site"
/db_xref="CDD:206666"
misc_feature 371471..371479
/locus_tag="VC0348"
/note="G5 box; other site"
/db_xref="CDD:206666"
gene 371780..372967
/locus_tag="VC0349"
/db_xref="GeneID:2615062"
CDS 371780..372967
/locus_tag="VC0349"
/note="similar to GB:U09005 SP:P40605 PID:507734;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="hflK protein"
/protein_id="NP_230003.1"
/db_xref="GI:15640376"
/db_xref="GeneID:2615062"
/translation="MAWNEPGNNNGNNGRDNDPWGNNNRGNKGGRDQGPPDLDEVFNK
LSQKLGGKFGGKGGKGPSFSGGGAIGFGVIAAIAVAVWFFTGFYTIGEAERGVVLRLG
KYDRIVDPGLNWRPRFIDEVTPVNVQAIRSLRASGLMLTKDENVVTVSMDVQYRIADP
YKYLYRVTNADDSLRQATDSALRAVVGDSLMDSILTSGRQQIRQSTQQTLNQVIDSYD
MGLMIVDVNFQSARPPEQVKDAFDDAIAAREDEERFIREAEAYKNEILPKATGRAERL
KKEAQGYNERTINEALGQVAQFEKLLPEYQAAPKVTRDRLYLDAMEQVYSNTSKVLID
SESSGNLLYLPIDKLAGQDNKTAQPRPNKSSSAYDQIELESQTTETNTDTQSRSTTRQ
GRY"
misc_feature <371873..371926
/locus_tag="VC0349"
/note="Bacterial membrane protein N terminal; Region:
HflK_N; pfam12221"
/db_xref="CDD:221467"
misc_feature 372023..372754
/locus_tag="VC0349"
/note="Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflK; cd03404"
/db_xref="CDD:239498"
misc_feature 372038..372820
/locus_tag="VC0349"
/note="HflK protein; Region: hflK; TIGR01933"
/db_xref="CDD:130988"
gene 372970..373950
/locus_tag="VC0350"
/db_xref="GeneID:2615063"
CDS 372970..373950
/locus_tag="VC0350"
/note="similar to GB:U09005 SP:P40606 PID:507735;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="hflC protein"
/protein_id="NP_230004.1"
/db_xref="GI:15640377"
/db_xref="GeneID:2615063"
/translation="MRKLLIPSIVLIIAALLMSMFVIPEGERGIVIRFGRVLKDNNDL
ARIYEPGLHFKMPLFDRVKTLDARIQTMDGRSDRFVTSEKKDVIIDTYVKWRIEDFGQ
YYLATGGGNALTAEALLERKVTDVLRSEIGAREIKQIVSGPRNVAVLPENADSSELTT
EAAKEAMEIDGQRDQIMSEVLNDTRESAMKDLGVYVVDFRMKKINLPDEISESIYRRM
RAERESVARKHRSQGREKAEVIRAQAELEVATILAEADKTARVTRGTADAEAAKIYSD
AYKKDPEFFSFLRSLRAYEKSFNSKNDILVLDPNSEFFQYMNNAKGAAAK"
misc_feature 372970..373923
/locus_tag="VC0350"
/note="HflC protein; Region: hflC; TIGR01932"
/db_xref="CDD:233644"
misc_feature 373027..373863
/locus_tag="VC0350"
/note="Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflC; cd03405"
/db_xref="CDD:239499"
gene 373993..374199
/locus_tag="VC0351"
/db_xref="GeneID:2615064"
CDS 373993..374199
/locus_tag="VC0351"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230005.1"
/db_xref="GI:15640378"
/db_xref="GeneID:2615064"
/translation="MLFGVNMSQTLWVALGLVLIVEGLGPLFAPRGWRQMVAQLSLQP
DNQLRRIGGCLVVAGAVIAYVFAR"
misc_feature 374011..374196
/locus_tag="VC0351"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3242"
/db_xref="CDD:33054"
gene complement(374240..374467)
/locus_tag="VC0352"
/db_xref="GeneID:2615065"
CDS complement(374240..374467)
/locus_tag="VC0352"
/note="similar to GB:L42023 SP:P44759 PID:1004028
PID:1222511 PID:1204822; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230006.2"
/db_xref="GI:161582027"
/db_xref="GeneID:2615065"
/translation="MQEMSLTQLQERIEDLECKLAFQEQTIETLNDALTQQQLLLSKM
QDQMKYVVGKVKNMDTSTLADPAHETPPPHY"
misc_feature complement(374243..374467)
/locus_tag="VC0352"
/note="hypothetical protein; Provisional; Region:
PRK04406"
/db_xref="CDD:235296"
gene complement(374470..375453)
/locus_tag="VC0353"
/db_xref="GeneID:2615066"
CDS complement(374470..375453)
/locus_tag="VC0353"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230007.1"
/db_xref="GI:15640380"
/db_xref="GeneID:2615066"
/translation="MMRRIYHSLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLS
RDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQANPVSVIRIADSERFAVTASQNN
FAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLA
HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLA
FTSDGGNQALIWDLTADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNT
QDGKKIASFESENKKDHGPTQAVVYDAAFDAQQRAVAGSSAGIAQAWRMEN"
misc_feature complement(374482..375207)
/locus_tag="VC0353"
/note="WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions including
adaptor/regulatory modules in signal transduction,
pre-mRNA processing and cytoskeleton assembly; typically
contains a GH dipeptide 11-24 residues from...; Region:
WD40; cl02567"
/db_xref="CDD:207648"
misc_feature complement(374584..>375186)
/locus_tag="VC0353"
/note="FOG: WD40 repeat [General function prediction
only]; Region: COG2319"
/db_xref="CDD:32473"
misc_feature complement(order(374482..374487,374503..374505,
374515..374517,374590..374595,374629..374634,
374650..374652,374665..374667,374722..374727,
374761..374766,374782..374784,374794..374796,
374848..374850,374884..374889,374905..374907,
374920..374922,374971..374973,375007..375012,
375028..375030,375043..375045,375133..375138,
375154..375156,375166..375168))
/locus_tag="VC0353"
/note="structural tetrad; other site"
/db_xref="CDD:29257"
gene 375590..376369
/locus_tag="VC0354"
/db_xref="GeneID:2615067"
CDS 375590..376369
/locus_tag="VC0354"
/note="similar to SP:P45523 SP:P39175 PID:606281
PID:862300 GB:U00096; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="FKBP-type peptidylprolyl isomerase"
/protein_id="NP_230008.1"
/db_xref="GI:15640381"
/db_xref="GeneID:2615067"
/translation="MKSLFKVSLLAATVMLAVGCQKEEAPKTETTPAAQTAAAKTVEF
KSEDDKAAYAIGVSFANYLKTSIEKPSEIGIDLNKDLVLKGIEHVFAGNPEMSEEETR
AALEALDKRVAETMQAKAAEKAAENKKKGDEFRAQFEKESGVVKTQSGLLYQVMTPAE
GDKPKDTDTVQVHYKGTLIDGSQFDSSYERGEPATFPLNRVIPGWTEGVQLMSVGSKF
KLVIPPELAYGEQDTPTIPANSTLVFEVELLKIENGKDAAQ"
misc_feature 375590..376360
/locus_tag="VC0354"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional; Region: PRK10902"
/db_xref="CDD:236791"
misc_feature 375713..376054
/locus_tag="VC0354"
/note="Domain amino terminal to FKBP-type peptidyl-prolyl
isomerase; Region: FKBP_N; pfam01346"
/db_xref="CDD:216447"
misc_feature 376073..376336
/locus_tag="VC0354"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; pfam00254"
/db_xref="CDD:215821"
gene 376568..377290
/locus_tag="VC0355"
/db_xref="GeneID:2615034"
CDS 376568..377290
/locus_tag="VC0355"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230009.1"
/db_xref="GI:15640382"
/db_xref="GeneID:2615034"
/translation="MTMTETMNVDLLLEMESVHVKPFTEHDKVILRSYEAVVDGIASL
IGPFCEIVLHSLEDLNTSAIKIANGENTGRQVGSPITDMALKMLRDIEGSERNFSRSY
FTRAKGGVLMKSITVAIRNGENRVIGLLCINVNLDAPFSQVLKSFMPTQEAQEAASSV
NFASDVEELVDQTVERTIEEINGDKSVSNNTKNRQIVMALFDKGIFDIKDAINRVADR
LNISKHTVYLYIRQRKTEDDEK"
misc_feature 376628..377281
/locus_tag="VC0355"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2964"
/db_xref="CDD:32784"
misc_feature 376655..377005
/locus_tag="VC0355"
/note="YheO-like PAS domain; Region: PAS_6; pfam08348"
/db_xref="CDD:116929"
misc_feature 377069..377260
/locus_tag="VC0355"
/note="HTH domain; Region: HTH_22; pfam13309"
/db_xref="CDD:205489"
gene 377287..377682
/locus_tag="VC0356"
/db_xref="GeneID:2615035"
CDS 377287..377682
/locus_tag="VC0356"
/note="in Escherichai coli the heterohexameric TusBCD
complex is involved in sulfur related that results in
thiouridation to U34 position in some tRNAs"
/codon_start=1
/transl_table=11
/product="sulfur transfer complex subunit TusD"
/protein_id="NP_230010.1"
/db_xref="GI:15640383"
/db_xref="GeneID:2615035"
/translation="MKPLTYTLVVNGPQYGTQSARNAYLFAKALIEKGHILKSVFFYQ
DGVLNGSSTHVPANDEFNLLQGWQSLAQSHQVQLETCVAAALRRGVVSEQEASQHGLA
SHNLAAHFTQAGLGSLAQALLEQDRVVQF"
misc_feature 377296..377679
/locus_tag="VC0356"
/note="sulfur transfer complex subunit TusD; Validated;
Region: PRK00207"
/db_xref="CDD:178928"
gene 377679..378035
/locus_tag="VC0357"
/db_xref="GeneID:2615036"
CDS 377679..378035
/locus_tag="VC0357"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230011.1"
/db_xref="GI:15640384"
/db_xref="GeneID:2615036"
/translation="MNKVAWVFHTPPHGSTAGREGLDAILATSAYSEEQALFFVGEGV
LQLVNHQHPESILSRDYISAFKLLDLYDIEARYVCQQSLVSWGLSEQDLLIEVEVVDA
QALAQLLHHYDQLLTF"
misc_feature 377685..378032
/locus_tag="VC0357"
/note="sulfur relay protein TusC/DsrF; Region:
sulf_tusC_dsrF; TIGR03010"
/db_xref="CDD:200229"
gene 378045..378320
/locus_tag="VC0358"
/db_xref="GeneID:2615037"
CDS 378045..378320
/locus_tag="VC0358"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230012.1"
/db_xref="GI:15640385"
/db_xref="GeneID:2615037"
/translation="MLHIVKHLEKLPLLSAYLLDGDVVLLTENAVYAAAVHSPYQASI
NDQNLWLVLYEDLHARGWLEKCDPRISVVTMSDFVDLTVTHDKSITW"
misc_feature 378045..378317
/locus_tag="VC0358"
/note="Uncharacterized conserved protein involved in
oxidation of intracellular sulfur [Inorganic ion transport
and metabolism]; Region: DsrH; COG2168"
/db_xref="CDD:225079"
gene 378505..378879
/gene="rpsL"
/locus_tag="VC0359"
/db_xref="GeneID:2615038"
CDS 378505..378879
/gene="rpsL"
/locus_tag="VC0359"
/note="'interacts with and stabilizes bases of the 16S
rRNA that are involved in tRNA selection in the A site and
with the mRNA backbone; located at the interface of the
30S and 50S subunits, it traverses the body of the 30S
subunit contacting proteins on the other side; mutations
in the S12 gene confer streptomycin resistance'"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="NP_230013.1"
/db_xref="GI:15640386"
/db_xref="GeneID:2615038"
/translation="MATINQLVRKPRAKQVVKSNVPALAACPQKRGVCTRVYTTTPKK
PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
DCAGVNDRKQARSKYGVKRPKS"
misc_feature 378511..378834
/gene="rpsL"
/locus_tag="VC0359"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:239466"
misc_feature order(378514..378519,378523..378528,378535..378540)
/gene="rpsL"
/locus_tag="VC0359"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:239466"
misc_feature 378514..378516
/gene="rpsL"
/locus_tag="VC0359"
/note="S8 interaction site; other site"
/db_xref="CDD:239466"
misc_feature order(378538..378546,378580..378582,378586..378591,
378595..378597,378640..378645,378649..378657,
378676..378678,378700..378702,378709..378714,
378751..378756,378766..378771,378832..378834)
/gene="rpsL"
/locus_tag="VC0359"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(378631..378636,378766..378768)
/gene="rpsL"
/locus_tag="VC0359"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:239466"
misc_feature 378634..378639
/gene="rpsL"
/locus_tag="VC0359"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(378637..378654,378712..378738)
/gene="rpsL"
/locus_tag="VC0359"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:239466"
gene 378995..379465
/locus_tag="VC0360"
/db_xref="GeneID:2615039"
CDS 378995..379465
/locus_tag="VC0360"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="NP_230014.1"
/db_xref="GI:15640387"
/db_xref="GeneID:2615039"
/translation="MPRRRVIGQRKILPDPKFKSELLAKFVNILMVDGKKSTAEKIVY
TALDTMAEKSGKDHLAVFEEALENVRPAVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
WLVEAARKRGEKSMAARLAAEMLDAAENKGSAVKKREDVHRMAEANKAFAHYRW"
misc_feature 378995..379462
/locus_tag="VC0360"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:235398"
gene 379541..381637
/locus_tag="VC0361"
/gene_synonym="fusA"
/db_xref="GeneID:2615040"
CDS 379541..381637
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="NP_230015.1"
/db_xref="GI:15640388"
/db_xref="GeneID:2615040"
/translation="MARKTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVH
DGAATMDWMVQEQERGITITSAATTTFWRGMEAQFQEHRINIIDTPGHVDFTIEVERS
LRVLDGAVVVFCGTSGVEPQSETVWRQADKYGVPRMVFVNKMDRAGADFLRVVGQIKH
RLGANPVPIQLNIGAEEEFKGVIDLIKMKAINWNEADQGMSFTYEEIPADMLELAQEW
RNHLVEAAAEASEELMEKYLEDGELSEVEIKQALRQRTINNEIVLAACGSAFKNKGVQ
AVLDAVIEFLPSPTDVPAIKGIDDRENSVERHADDNEPFSSLAFKIATDPFVGSLTFI
RVYSGVVNSGDAVYNSVKQKKERFGRIVQMHANKRDEIKEIRAGDIAAAIGLKDVTTG
DTLCDPNHVVILERMEFPEPVIQIAVEPRSKADQEKMGIALGKLAAEDPSFRVETDAE
TGQTLISGMGELHLDIIVDRMKREFGVDCNVGKPQVAYRETIRGKSEVEGKFVRQSGG
RGQYGHVWLKIEPAEPGQGFVFVDAIAGGVIPKEFINPVAKGIEEQMNNGVLAGYPVL
DVKATLFDGSFHDVDSSEMAFKIAGSMAFKKGALEAQPVLLEPLMKVEITTPEDWMGD
VVGDLNRRRGIIEGMDEGPAGLKIIHAKVPLSEMFGYATDLRSATQGRASYSMEFAEY
ADVPKNIADAIIAEHG"
misc_feature 379541..381628
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:234569"
misc_feature 379574..380407
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 379589..379612
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(379592..379594,379598..379600,379610..379615,
379622..379624,379631..379636,379736..379741,
379814..379819,379886..379891,379997..379999,
380009..380011)
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(379598..379600,379604..379615,379964..379969,
379973..379975,380342..380350)
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 379679..379738
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 379724..379726
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 379802..379813
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 379808..379864
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 379964..379975
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 380342..380350
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 380483..380731
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:239755"
misc_feature 381002..381349
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:238715"
misc_feature 381362..381598
/locus_tag="VC0361"
/gene_synonym="fusA"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:239683"
gene 381760..382944
/gene="tuf"
/locus_tag="VC0362"
/db_xref="GeneID:2615041"
CDS 381760..382944
/gene="tuf"
/locus_tag="VC0362"
/EC_number="3.6.5.3"
/note="'EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu'"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="NP_230016.1"
/db_xref="GI:15640389"
/db_xref="GeneID:2615041"
/translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGGKA
RDFASIDNAPEERERGITINTSHVEYDTPNRHYAHVDCPGHADYVKNMITGAAQMDGG
ILVVAATDGPMPQTREHILLGRQVGIPYIIVFMNKCDMVDDEELLELVEMEVRELLSE
YDFPGDDLPVIQGSALGALNGEAQWEAKIVELAEALDTYIPEPERAVDMAFLMPIEDV
FSIQGRGTVVTGRIERGILKVGDEVAIVGIKETVKTTCTGVEMFRKLLDEGRAGENVG
ALLRGTKREEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFR
TTDVTGSIELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKI
IA"
misc_feature 381760..382941
/gene="tuf"
/locus_tag="VC0362"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 381790..382368
/gene="tuf"
/locus_tag="VC0362"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 381814..381837
/gene="tuf"
/locus_tag="VC0362"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(381817..381819,381823..381825,381835..381840,
381847..381849,381856..381861,381871..381873,
381955..381960,382012..382017,382084..382089,
382093..382104,382111..382113,382204..382206,
382216..382218,382294..382299)
/gene="tuf"
/locus_tag="VC0362"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(381823..381840,381898..381900,382165..382170,
382174..382176,382279..382287)
/gene="tuf"
/locus_tag="VC0362"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 381925..381957
/gene="tuf"
/locus_tag="VC0362"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 381943..381945
/gene="tuf"
/locus_tag="VC0362"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 382000..382011
/gene="tuf"
/locus_tag="VC0362"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 382006..382062
/gene="tuf"
/locus_tag="VC0362"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 382165..382176
/gene="tuf"
/locus_tag="VC0362"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 382279..382287
/gene="tuf"
/locus_tag="VC0362"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 382390..382650
/gene="tuf"
/locus_tag="VC0362"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 382657..382926
/gene="tuf"
/locus_tag="VC0362"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(382693..382695,382699..382707,382759..382761,
382879..382887,382915..382917)
/gene="tuf"
/locus_tag="VC0362"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 383247..383435
/locus_tag="VC0364"
/db_xref="GeneID:2615043"
CDS 383247..383435
/locus_tag="VC0364"
/note="similar to GB:M27176 SP:P13655 PID:145408
PID:606271 GB:U00096; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="bacterioferritin-associated ferredoxin"
/protein_id="NP_230018.1"
/db_xref="GI:15640391"
/db_xref="GeneID:2615043"
/translation="MYVCLCHGVSDKKIRRLVAEQGITDIKGIKRCTALGSQCGKCVR
QAKEIIEESLIAQFKLAS"
misc_feature 383247..383432
/locus_tag="VC0364"
/note="Bacterioferritin-associated ferredoxin [Inorganic
ion transport and metabolism]; Region: Bfd; COG2906"
/db_xref="CDD:225458"
gene 383505..383981
/locus_tag="VC0365"
/db_xref="GeneID:2615044"
CDS 383505..383981
/locus_tag="VC0365"
/note="similar to GB:M83692 SP:P22759 PID:142298;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="bacterioferritin"
/protein_id="NP_230019.1"
/db_xref="GI:15640392"
/db_xref="GeneID:2615044"
/translation="MKGDPVIIQHLNKVLANELIAINQYFLHARMYKDWGLKHLADKE
YHESIDEMKHADHIVERILFLEGIPNLQDLGKLMIGEDVQEMLECDLKLELIAIPDLK
EAIAYAEKVRDYVSRDLFQEILEDEEEHVDWLETQLGLIDMTGIQNYLQAQFVDDE"
misc_feature 383505..383975
/locus_tag="VC0365"
/note="Bacterioferritin (cytochrome b1) [Inorganic ion
transport and metabolism]; Region: Bfr; COG2193"
/db_xref="CDD:225104"
misc_feature 383508..383963
/locus_tag="VC0365"
/note="Bacterioferritin, ferritin-like diiron-binding
domain; Region: Bacterioferritin; cd00907"
/db_xref="CDD:153099"
misc_feature order(383547..383549,383571..383573,383592..383594,
383637..383639,383658..383660,383670..383672)
/locus_tag="VC0365"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:153099"
misc_feature order(383553..383558,383562..383567,383577..383579,
383655..383657,383664..383666,383781..383786,
383793..383795,383805..383807,383880..383885)
/locus_tag="VC0365"
/note="ferroxidase pore; other site"
/db_xref="CDD:153099"
misc_feature order(383556..383558,383577..383579,383655..383657,
383664..383666,383784..383786,383805..383807,
383883..383885,383892..383894)
/locus_tag="VC0365"
/note="ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153099"
gene 384193..384561
/gene="rpsF"
/locus_tag="VC0366"
/db_xref="GeneID:2615045"
CDS 384193..384561
/gene="rpsF"
/locus_tag="VC0366"
/note="'binds cooperatively with S18 to the S15-16S
complex, allowing platform assembly to continue with S11
and S21'"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="NP_230020.1"
/db_xref="GI:15640393"
/db_xref="GeneID:2615045"
/translation="MRHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGR
RQLAYPINKLHKAHYVLMNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITEPSIM
LKAREERVKRDEMKFDADVE"
misc_feature 384193..384513
/gene="rpsF"
/locus_tag="VC0366"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 384569..384871
/locus_tag="VC0367"
/db_xref="GeneID:2615046"
CDS 384569..384871
/locus_tag="VC0367"
/note="binds single-stranded DNA at the primosome assembly
site"
/codon_start=1
/transl_table=11
/product="primosomal replication protein N"
/protein_id="NP_230021.1"
/db_xref="GI:15640394"
/db_xref="GeneID:2615046"
/translation="MTNRIELSGVVAKALVRSQSPSGVKHCHFWLEHRSTMVEADLPR
QVFCRLPVVVSGARSEALTQNLVQGSSILVSGFLAYQTSRNGVGKLVLHADKISQI"
misc_feature 384581..384859
/locus_tag="VC0367"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:239942"
misc_feature order(384581..384592,384665..384673,384710..384712,
384716..384718,384779..384781,384806..384808,
384836..384838)
/locus_tag="VC0367"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239942"
misc_feature order(384596..384604,384620..384622,384650..384652,
384671..384676,384704..384709,384713..384715,
384719..384721,384725..384727,384731..384733,
384770..384775,384797..384799,384803..384805,
384809..384814,384839..384841,384845..384847)
/locus_tag="VC0367"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:239942"
misc_feature order(384779..384781,384785..384787,384791..384793)
/locus_tag="VC0367"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239942"
gene 384887..385114
/gene="rpsR"
/locus_tag="VC0368"
/db_xref="GeneID:2615047"
CDS 384887..385114
/gene="rpsR"
/locus_tag="VC0368"
/note="binds as a heterodimer with protein S6 to the
central domain of the 16S rRNA; helps stabilize the
platform of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="NP_230022.1"
/db_xref="GI:15640395"
/db_xref="GeneID:2615047"
/translation="MARFFRRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRI
TGTSAKYQRQLARAIKRARYLALLPYTDKHQ"
misc_feature <384926..385105
/gene="rpsR"
/locus_tag="VC0368"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene 385148..385597
/gene="rplI"
/locus_tag="VC0369"
/db_xref="GeneID:2615048"
CDS 385148..385597
/gene="rplI"
/locus_tag="VC0369"
/note="in Escherichia coli this protein is wrapped around
the base of the L1 stalk"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="NP_230023.1"
/db_xref="GI:15640396"
/db_xref="GeneID:2615048"
/translation="MQVILLDKIGNLGSLGDTVNVKSGYARNFLIPQGKAVMATKANV
AMFESRRAELEAKVAEQLAAAQTRADQVNALEAVVIASKAGDEGKLFGSIGTRDIADA
ITAAGVKVSKSEVRLPEGALRNVGAYEVSVQLHSEVFATAKVQVVAE"
misc_feature 385148..385594
/gene="rplI"
/locus_tag="VC0369"
/note="50S ribosomal protein L9; Reviewed; Region: rplI;
PRK00137"
/db_xref="CDD:234659"
misc_feature 385148..385291
/gene="rplI"
/locus_tag="VC0369"
/note="Ribosomal protein L9, N-terminal domain; Region:
Ribosomal_L9_N; pfam01281"
/db_xref="CDD:201708"
misc_feature 385331..385594
/gene="rplI"
/locus_tag="VC0369"
/note="Ribosomal protein L9, C-terminal domain; Region:
Ribosomal_L9_C; pfam03948"
/db_xref="CDD:146531"
gene complement(385659..386468)
/locus_tag="VC0370"
/db_xref="GeneID:2615049"
CDS complement(385659..386468)
/locus_tag="VC0370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230024.1"
/db_xref="GI:15640397"
/db_xref="GeneID:2615049"
/translation="MNFYYATSILIKEVVVSTKWLLGISLMLSTVAQANENSNQDTDI
SIPSPWKHQVEFGYQAHSGNTESESLNSRLKSEYTMGRHRTYGEWKFYKLDKNGKEDK
RQSTFAFQSDYKLGPKTYLYGSFYGTNSRYTAYFKDHTLSGGLGYQFAYTDEMVLELE
LGPGFRYQKPNLDEIDDDDIVFPDLVQEAIFRSNLKAEWQALNNLRFEAEMTMVSGRS
NTSLDSNISLTNDITDHIALKIRQSRQYHNRMPEGLSKADSVISVNLLFEF"
misc_feature complement(385662..386468)
/locus_tag="VC0370"
/note="Putative salt-induced outer membrane protein [Cell
envelope biogenesis, outer membrane]; Region: COG3137"
/db_xref="CDD:32951"
gene 386594..388000
/locus_tag="VC0371"
/db_xref="GeneID:2615050"
CDS 386594..388000
/locus_tag="VC0371"
/note="unwinds double stranded DNA"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="NP_230025.1"
/db_xref="GI:15640398"
/db_xref="GeneID:2615050"
/translation="MADPRTDNRNRKIPDAQVDAIKVPPHSLEAEQSVIGGLLLDNER
WDTVSEHVMTQDFYSRPHRLIFDGVKSILEAGKPLDLITLSEYLEQREQLEDVGGFAY
LADLAKNTPSAANINAYAEIVAERALVRNLIGVANEIADAGYDPQGRNAEDLLDLAES
KVFAIAEARTSENEGPKNVDSILERTLERIELLYKTPQDGVTGVNTGFTDLNKKTAGL
QGSDLIIVAARPSMGKTTFAMNLCENAAMEQDKPVLIFSLEMPAEQIMMRMLASLSRV
DQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGL
SLIMVDYLQLMRVPALTDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADK
RPVNSDLRESGSIEQDADLIMFIYRDEVYHPDSPLKGTAEIIIGKQRNGPIGSVRLTF
QGHYSRFDNYAGPAFDDE"
misc_feature 386606..387997
/locus_tag="VC0371"
/note="replicative DNA helicase; Provisional; Region:
PRK08840"
/db_xref="CDD:181562"
misc_feature 386660..386968
/locus_tag="VC0371"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:216111"
misc_feature 387218..387949
/locus_tag="VC0371"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:238484"
misc_feature 387278..387298
/locus_tag="VC0371"
/note="Walker A motif; other site"
/db_xref="CDD:238484"
misc_feature order(387293..387298,387611..387613,387734..387736,
387842..387844,387908..387910,387941..387943)
/locus_tag="VC0371"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238484"
misc_feature 387602..387613
/locus_tag="VC0371"
/note="Walker B motif; other site"
/db_xref="CDD:238484"
misc_feature order(387626..387631,387650..387658,387731..387757,
387839..387844,387878..387883)
/locus_tag="VC0371"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:238484"
gene 387972..389099
/gene="alr"
/locus_tag="VC0372"
/db_xref="GeneID:2615051"
CDS 387972..389099
/gene="alr"
/locus_tag="VC0372"
/EC_number="5.1.1.1"
/note="converts L-alanine to D-alanine which is used in
cell wall biosynthesis; binds one pyridoxal phosphate per
monomer; forms a homodimer"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="NP_230026.1"
/db_xref="GI:15640399"
/db_xref="GeneID:2615051"
/translation="MLDLHLTMSNSMNYMKAATAYINLEALQHNLQRVKQQAPESKIM
AVVKANGYGHGLRHIARHALGADAFGVARIEEALQLRASGVVKPILLLEGFYSPGDLP
VLVTNNIQTVVHCEEQLQALEQAQLETPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQ
CENVAKPLRYMSHFGCADELDKSTTVEQTELFLSLTQGCQGERSLAASAGLLAWPQSQ
LEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSHLIAVREVKAGESVGYGGTWTSQR
DTKIGVIAIGYGDGYPRTAPNGTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDE
AMLWGNELPVEEVAAHIGTIGYELVTKLTSRVEMSYYGAGV"
misc_feature 388014..389081
/gene="alr"
/locus_tag="VC0372"
/note="alanine racemase; Reviewed; Region: alr; PRK00053"
/db_xref="CDD:178827"
misc_feature 388020..389081
/gene="alr"
/locus_tag="VC0372"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzymes, Proteobacterial Alanine Racemases; Region:
PLPDE_III_AR_proteobact; cd06827"
/db_xref="CDD:143500"
misc_feature order(388107..388109,388113..388115,388125..388127,
388245..388247,388377..388379,388398..388400,
388482..388484,388488..388490,388590..388598,
388638..388649,389037..389039)
/gene="alr"
/locus_tag="VC0372"
/note="active site"
/db_xref="CDD:143500"
misc_feature order(388107..388109,388113..388115,388125..388127,
388245..388247,388488..388490,388590..388595,
388638..388640,388644..388649,389037..389039)
/gene="alr"
/locus_tag="VC0372"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143500"
misc_feature order(388113..388115,388125..388127,388398..388400,
388488..388490,389037..389039)
/gene="alr"
/locus_tag="VC0372"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143500"
misc_feature order(388113..388115,388773..388775)
/gene="alr"
/locus_tag="VC0372"
/note="catalytic residues [active]"
/db_xref="CDD:143500"
misc_feature order(388734..388736,388743..388745,388761..388766,
388770..388778,388815..388817,388830..388832,
388848..388850,388914..388916,388920..388922,
389031..389033,389037..389042,389055..389057,
389064..389066)
/gene="alr"
/locus_tag="VC0372"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143500"
gene complement(389182..389601)
/locus_tag="VC0373"
/db_xref="GeneID:2615016"
CDS complement(389182..389601)
/locus_tag="VC0373"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230027.1"
/db_xref="GI:15640400"
/db_xref="GeneID:2615016"
/translation="MWHQHTIQLRPRARGFHLITDEIEQQLPQIKRLNVGLLHLFVQH
TSASLTINENADPTVRQDMEAHFNHAAPEGAPYYRHIDEGDDDMPAHIKSSLLGCSVS
IPIQQGRLALGTWQGIYLGEHRNHGGIRRVIATIQGE"
misc_feature complement(389188..389601)
/locus_tag="VC0373"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG0432"
/db_xref="CDD:223509"
gene 389886..391538
/gene="pgi"
/locus_tag="VC0374"
/db_xref="GeneID:2615017"
CDS 389886..391538
/gene="pgi"
/locus_tag="VC0374"
/EC_number="5.3.1.9"
/note="functions in sugar metabolism in glycolysis and the
Embden-Meyerhof pathways (EMP) and in gluconeogenesis;
catalyzes reversible isomerization of glucose-6-phosphate
to fructose-6-phosphate; member of PGI family"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate isomerase"
/protein_id="NP_230028.1"
/db_xref="GI:15640401"
/db_xref="GeneID:2615017"
/translation="MLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSA
RFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTAL
RNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSD
LGPYMVTEALVPYKNHLTMHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMT
NAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWS
AIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESE
AILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQL
IHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGK
SAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQ
WGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA"
misc_feature 389892..391535
/gene="pgi"
/locus_tag="VC0374"
/note="glucose-6-phosphate isomerase; Reviewed; Region:
pgi; PRK00179"
/db_xref="CDD:178917"
misc_feature 390249..390716
/gene="pgi"
/locus_tag="VC0374"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_1; cd05015"
/db_xref="CDD:88410"
misc_feature order(390351..390353,390357..390362,390507..390515,
390522..390524,390693..390695)
/gene="pgi"
/locus_tag="VC0374"
/note="active site"
/db_xref="CDD:88410"
misc_feature order(390432..390443,390528..390530,390540..390542,
390549..390551)
/gene="pgi"
/locus_tag="VC0374"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88410"
misc_feature 390879..391448
/gene="pgi"
/locus_tag="VC0374"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_2; cd05016"
/db_xref="CDD:88411"
misc_feature order(390879..390881,390903..390905,390939..390941,
390951..390953,390960..390965,391023..391025,
391029..391037,391044..391049,391056..391061,
391068..391070,391134..391136,391140..391142,
391164..391166,391173..391175)
/gene="pgi"
/locus_tag="VC0374"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88411"
misc_feature order(390939..390941,390951..390953)
/gene="pgi"
/locus_tag="VC0374"
/note="active site"
/db_xref="CDD:88411"
gene 391741..392919
/locus_tag="VC0376"
/db_xref="GeneID:2615019"
CDS 391741..392919
/locus_tag="VC0376"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230030.1"
/db_xref="GI:15640403"
/db_xref="GeneID:2615019"
/translation="MSETAIQTKTQARQRKVFAHHHVQHYRSQLERRISHSPQFREGK
VINAMPHITATPSWWQTAWSYFGGRAQLKPNAQLPVAPLNLQALQTRSKALRVTWLGH
SSLFIEVDGLRVLTDPVFDYASPWIAKAWFARNLPNSGVREQLPLPDVIVISHDHYDH
LEQASVVYYAAHSVTFYVPLGVGQHLIRWGVSPERIIEFDWWEQIKREGVEFICTPAN
HNSGRYYLDHNATLWCSWVIKGHQETLYFSGDSAYDTHFAKIAERCGPIDLACLEVAA
DVKQHQGYPVENWGHMQAKHTVQAFRDLQAKKLLPIHWATYELFTHQWDEPIADLVKH
CQEQSITLLTPMAGESLTMANHSASHAWWQGLETEPMSGARYWQMGLACSLLLLLMVV
"
misc_feature 392023..392820
/locus_tag="VC0376"
/note="Predicted Zn-dependent hydrolases of the
beta-lactamase fold [General function prediction only];
Region: COG2220"
/db_xref="CDD:225130"
misc_feature 392077..392679
/locus_tag="VC0376"
/note="Beta-lactamase superfamily domain; Region:
Lactamase_B_2; pfam12706"
/db_xref="CDD:221727"
gene complement(393036..393497)
/locus_tag="VC0377"
/db_xref="GeneID:2615020"
CDS complement(393036..393497)
/locus_tag="VC0377"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230031.1"
/db_xref="GI:15640404"
/db_xref="GeneID:2615020"
/translation="MRAEFVNPFLASLMNVLKTMASLELKPQKPRIKKDEIARGDVSG
LIGMIGPTTRGSMSITFDESLALEIMQNMLGERPNGLNEEVTDMVGEITNMVTGGAKR
ILAESGFDFDMATPVVVSGRGHTIRHKCEGAIILMPFSSPWGNAFIEICFE"
misc_feature complement(393039..393497)
/locus_tag="VC0377"
/note="Predicted inhibitor of MCP methylation, homolog of
CheC [Cell motility and secretion]; Region: COG1406"
/db_xref="CDD:224324"
misc_feature complement(393078..393374)
/locus_tag="VC0377"
/note="Chemotaxis phosphatase CheX; Region: CheX;
pfam13690"
/db_xref="CDD:222321"
gene complement(393507..393974)
/locus_tag="VC0378"
/db_xref="GeneID:2615021"
CDS complement(393507..393974)
/locus_tag="VC0378"
/note="similar to SP:P32692 PID:409798 GB:U00096
PID:1790480; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="zinc uptake regulation protein"
/protein_id="NP_230032.1"
/db_xref="GI:15640405"
/db_xref="GeneID:2615021"
/translation="MMVMVLDNKLTKQIEEICAARGVRLTSQRKTVFELICASKRSSS
AYELLEDLKKSEPQAKPPTVYRALDFLLEQGFIHRVESTNSFISCCSCNAHKHFSHLL
ICDQCGNVIESRDDSLVALLASNAEKHGFTISNHVIESHGVCQTCLSKEKKQQ"
misc_feature complement(393543..393893)
/locus_tag="VC0378"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(393639..393641,393672..393674,
393684..393686,393705..393707,393849..393851))
/locus_tag="VC0378"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(393753..393797)
/locus_tag="VC0378"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(393567..393569,393618..393620,
393675..393677,393687..393689))
/locus_tag="VC0378"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(393546..393572,393576..393584,
393609..393614,393660..393668))
/locus_tag="VC0378"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(393543..393545,393654..393656,
393663..393665))
/locus_tag="VC0378"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 394329..395312
/locus_tag="VC0379"
/db_xref="GeneID:2615022"
CDS 394329..395312
/locus_tag="VC0379"
/note="similar to SP:P32695 PID:396384 GB:U00096
PID:1790483; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="tRNA-dihydrouridine synthase A"
/protein_id="NP_230033.1"
/db_xref="GI:15640406"
/db_xref="GeneID:2615022"
/translation="MTHSCRLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAII
HGRGDFLAYNQEEHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGR
FGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCE
QFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHL
QHLDGVMIGREAYQNPYLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERELSQGTHLG
HMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIPYQELGV"
misc_feature 394329..395291
/locus_tag="VC0379"
/note="tRNA-dihydrouridine synthase A; Provisional;
Region: PRK11815"
/db_xref="CDD:236991"
misc_feature 394344..395063
/locus_tag="VC0379"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:239200"
misc_feature order(394356..394364,394437..394439,394515..394517,
394596..394598,394722..394724,394821..394823,
394941..394943,394947..394949,395007..395012)
/locus_tag="VC0379"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239200"
misc_feature order(394515..394517,394605..394610,394722..394724,
394728..394730,394818..394823,394827..394832,
394944..394949,395010..395012)
/locus_tag="VC0379"
/note="active site"
/db_xref="CDD:239200"
misc_feature order(394605..394607,394728..394730,394821..394823,
394827..394829)
/locus_tag="VC0379"
/note="catalytic residues [active]"
/db_xref="CDD:239200"
misc_feature order(394608..394610,394722..394724,394818..394820,
394830..394832,394944..394949)
/locus_tag="VC0379"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239200"
gene 395774..396439
/locus_tag="VC0381"
/db_xref="GeneID:2615024"
CDS 395774..396439
/locus_tag="VC0381"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230035.1"
/db_xref="GI:15640408"
/db_xref="GeneID:2615024"
/translation="MNRTASAALVTALMVMPLSASAAESFYTASVGAEMWLASTKIDN
TRRDDANAPNLYFTFEHGFPYLPNVGLRYTNLEADFASFDKIDYTFYYPLLNRELMKF
DVGITLTQYANSDYRAPDARRYDFDQTTFNWYASAEITIPHTPFDVIGQFDFGNNSDL
KSSDVMAGLQYHLPIRAGDLAFKAGYRVVDLEFTELAKQSTDVKQSFVFADGWFVGAQ
FSF"
misc_feature 395780..396436
/locus_tag="VC0381"
/note="outer membrane protein; Region: OMP_w_GlyGly;
TIGR04219"
/db_xref="CDD:234505"
gene 396393..396563
/locus_tag="VC0382"
/db_xref="GeneID:2615025"
CDS 396393..396563
/locus_tag="VC0382"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230036.1"
/db_xref="GI:15640409"
/db_xref="GeneID:2615025"
/translation="MFLPMVGLWGLNLASDEFLIIEFFANQYVLNEPQVGSFLLFGPC
LVLSISQGWKAK"
gene 396521..396790
/locus_tag="VC0383"
/db_xref="GeneID:2615026"
CDS 396521..396790
/locus_tag="VC0383"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230037.1"
/db_xref="GI:15640410"
/db_xref="GeneID:2615026"
/translation="MLSFINKPRMESKMTIPELRELYQTQQLVEAIIEPSFQEGEWIV
EFRHQMGGFVLLTDENGEECRYIDLDSASQSAMAVGFRQVRIENQ"
gene 396876..398720
/locus_tag="VC0384"
/db_xref="GeneID:2615027"
CDS 396876..398720
/locus_tag="VC0384"
/note="similar to GB:M23008 SP:P38038 PID:145678
PID:145680 PID:882657; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="sulfite reductase (NADPH) flavoprotein
alpha-component"
/protein_id="NP_230038.1"
/db_xref="GI:15640411"
/db_xref="GeneID:2615027"
/translation="MNREVVTMSTGNTLPPALAALASPLNDAQLNQLQQTVTQLNAQQ
LAWVSGYFWGLSQSNALSVPHISAGQTASAASGKLTIIFASQTGNAKGVAQALLKEAQ
AAGIQAQLFDASDYKGKDLAKETHVIFVASTNGEGEAPDNALALHEFLKSKKAPKLPN
LKYGVLGLGDSSYQFFCQTGKDFDQFLENLGAQRLVERLDADVDYQAAATEWRKQVLS
ILKDELTGAAAVTSVATFAVSQTAESHYSKEQPYTASLSTSQKITGRDSGKDVRHIEI
DLADSGITYQPGDALGVWYENRPQLVNALLDSVGLSGHEEVQVDGETLSLHSALTHHY
EITAANPQLVAQFAELAQSEKLTSLAQDKEALREYATRTQVIDVLREEKVTLSAIQLL
SLLRRLTPRLYSIASSQSEVGEEVHLTVGVVEYEYEGEQRLGGASSFLAHQLEEGAPV
KVFVEHNNNFKLPSDDNAPLIMVGPGTGIAPFRSFIQERENRGAAGKNWLLFGDRTFT
QDFLYQVEWQKYLKSGVLNRLDVAFSRDQHEKVYVQHRLLEQAELVWQWLQEGAYFYV
CGDASRMAKDVHQALITVVEQQGGLNREQAEEYVSELRKAKRYQRDVY"
misc_feature 397014..398717
/locus_tag="VC0384"
/note="sulfite reductase [NADPH] flavoprotein,
alpha-component; Region: cysJ; TIGR01931"
/db_xref="CDD:233643"
misc_feature 397116..397508
/locus_tag="VC0384"
/note="Flavodoxin; Region: Flavodoxin_1; pfam00258"
/db_xref="CDD:215823"
misc_feature 397641..398717
/locus_tag="VC0384"
/note="Cytochrome p450- like alpha subunits of E. coli
sulfite reductase (SiR) multimerize with beta subunits to
catalyze the NADPH dependent reduction of sulfite to
sulfide. Beta subunits have an Fe4S4 cluster and a
siroheme, while the alpha subunits (cysJ...; Region: SiR;
cd06199"
/db_xref="CDD:99796"
misc_feature order(397743..397745,398076..398087,398130..398132,
398136..398138,398175..398186)
/locus_tag="VC0384"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99796"
misc_feature order(398076..398078,398082..398087)
/locus_tag="VC0384"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99796"
misc_feature order(398085..398087,398574..398576,398709..398711,
398715..398717)
/locus_tag="VC0384"
/note="catalytic residues [active]"
/db_xref="CDD:99796"
misc_feature order(398136..398147,398298..398300,398304..398306,
398385..398390,398475..398480,398499..398501,
398505..398507,398592..398594)
/locus_tag="VC0384"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99796"
misc_feature order(398175..398177,398184..398186,398193..398195)
/locus_tag="VC0384"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99796"
misc_feature order(398289..398291,398301..398312,398316..398318)
/locus_tag="VC0384"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99796"
gene 398720..400453
/locus_tag="VC0385"
/db_xref="GeneID:2615028"
CDS 398720..400453
/locus_tag="VC0385"
/note="hemoprotein; NADPH dependent; with the alpha
subunit (a flavoprotein) catalyzes the reduction of
sulfite to sulfide"
/codon_start=1
/transl_table=11
/product="sulfite reductase subunit beta"
/protein_id="NP_230039.1"
/db_xref="GI:15640412"
/db_xref="GeneID:2615028"
/translation="MSANQNPSVQEVLGEVLGPWSDNERLKRESHFLRGTIEQDLQDR
ITGGFTADNFQLIRFHGMYQQDDRDIRAERSKQKLEPLHNVMLRARMPGGIITPHQWL
AIDKFATEHTLYGSIRLTTRQTFQFHGVLKPNIKLMHQTLNSIGIDSIATAGDVNRNV
LCTSNPVESELHLQAYEWAKKISEHLLPKTRAYAEIWLDGEKIEGPDEEPILGSNYLP
RKFKTTVVIPPHNDVDVHANDLNFVAIGENGQLVGFNVLVGGGLAMTHGDTSTYPRRA
DDFGFIPLEKTLEVAAAVVSTQRDWGNRSNRKNAKTKYTLDRVGVEVFKAEVEKRAGI
TFAPSRAYEFTSRGDRIGWVEGIDGKHHLTLFIENGRILDFPGKPLKTGVAEIAKVHQ
GDFRMTANQNLIVAGVPADQKPHIEQLAREHGLIDDGVSEQRINSMACVAFPTCPLAM
AEAERFLPSFVTEVEGILAKHALPKEENIILRVTGCPNGCGRAMLAEIGLVGKAPGRY
NLHLGGNRNGTRIPKMYKENITDTQILQEIDELVGRWASERLDGEGFGDFTIRAGIIE
EVIISKRDFYA"
misc_feature 398747..400447
/locus_tag="VC0385"
/note="sulfite reductase subunit beta; Provisional;
Region: PRK13504"
/db_xref="CDD:184095"
misc_feature 398972..399154
/locus_tag="VC0385"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:202646"
misc_feature 399791..399988
/locus_tag="VC0385"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:202646"
gene 400446..401207
/locus_tag="VC0386"
/db_xref="GeneID:2615029"
CDS 400446..401207
/locus_tag="VC0386"
/EC_number="1.8.4.8"
/note="catalyzes the reduction of 3'-phosphoadenylyl
sulfate into sulfite"
/codon_start=1
/transl_table=11
/product="phosphoadenosine phosphosulfate reductase"
/protein_id="NP_230040.1"
/db_xref="GI:15640413"
/db_xref="GeneID:2615029"
/translation="MPNRTVPTLEELLTLNKVQQTLRLTEVNQHLESLTAQERVVWGL
ENLQGNHALSSSFGIQAAVMLHLLTSVKSDIPVVLTDTGYLFPETYQFIDELTERLNL
NLKVYSAPVSAAWQEARYGKLWEQGVEGIERYNQINKVEPMRRALDELNIGTWFSGLR
REQSQSRASLPILSVQNGVFKFLPVIDWTNKEVHYYLKDNDLPYHPLWEQGYLSVGDT
HTTQKWQPGMNEEQTRFFGLKRECGLHEDHNDTHQ"
misc_feature 400491..401183
/locus_tag="VC0386"
/note="3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism]; Region: CysH; COG0175"
/db_xref="CDD:223253"
misc_feature 400593..401093
/locus_tag="VC0386"
/note="This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly...;
Region: PAPS_reductase; cd01713"
/db_xref="CDD:238846"
misc_feature order(400860..400862,400944..400946,400974..400976,
400986..400988)
/locus_tag="VC0386"
/note="Active Sites [active]"
/db_xref="CDD:238846"
gene 401751..403286
/gene="16Sd"
/locus_tag="VCr010"
/db_xref="GeneID:2615032"
rRNA 401751..403286
/gene="16Sd"
/locus_tag="VCr010"
/product="16S ribosomal RNA"
/db_xref="GeneID:2615032"
gene 403350..403426
/gene="tRNA-Ile-3"
/locus_tag="VCt026"
/db_xref="GeneID:2615033"
tRNA 403350..403426
/gene="tRNA-Ile-3"
/locus_tag="VCt026"
/product="tRNA-Ile"
/db_xref="GeneID:2615033"
gene 403435..403511
/gene="tRNA-Ala-4"
/locus_tag="VCt027"
/db_xref="GeneID:2614982"
tRNA 403435..403511
/gene="tRNA-Ala-4"
/locus_tag="VCt027"
/product="tRNA-Ala"
/db_xref="GeneID:2614982"
gene 403799..406685
/gene="23Sd"
/locus_tag="VCr011"
/db_xref="GeneID:2614983"
rRNA 403799..406685
/gene="23Sd"
/locus_tag="VCr011"
/product="23S ribosomal RNA"
/db_xref="GeneID:2614983"
gene 406813..406930
/gene="5Sd"
/locus_tag="VCr012"
/db_xref="GeneID:2614984"
rRNA 406813..406930
/gene="5Sd"
/locus_tag="VCr012"
/product="5S ribosomal RNA"
/db_xref="GeneID:2614984"
gene 406956..407032
/gene="tRNA-Asp-3"
/locus_tag="VCt028"
/db_xref="GeneID:2614985"
tRNA 406956..407032
/gene="tRNA-Asp-3"
/locus_tag="VCt028"
/product="tRNA-Asp"
/db_xref="GeneID:2614985"
gene complement(407506..408840)
/locus_tag="VC0389"
/db_xref="GeneID:2614986"
CDS complement(407506..408840)
/locus_tag="VC0389"
/note="similar to GP:3327262; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="Na+/H+ antiporter"
/protein_id="NP_230043.1"
/db_xref="GI:15640416"
/db_xref="GeneID:2614986"
/translation="MSVYYTLCFLSAAAMLIAFINSKISRMQTTIAITAGSMMLSLLI
LIAGQNDWFHLNQIATETVTSINFENFLLKGILGFLLFAGGLGIKLPNLKDQKWEITV
LALGATLFSTFFIGFTLYGFCQLIGIQFDLVYCLLFGALISPTDPIAVLAIVKKLKAP
KRISTQIEGESLFNDGFGLVIFVTIFTIAFGHETPTVGSVTLLFIQEAIGGIVYGFLL
GLLFHYLISATDDHSMELLLTIGIPTAGYAFADVIHVSGPLAMVVSGIMIGNWTRFIG
FSKESEEHLDHFWELVDEFLNGVLFLLIGMSMLLFEFHQEDWILMAFAVPLVLCGRYL
SVFVSYIGFKRYRSYNPWSIRILTWGGLRGGLALAMALSIPSGIMVIPEKLIDVKELI
LVMTYAVVVFSILVQGSTITPMIEKAKKAEKALQAERNTDNQSPMPQQEQQH"
misc_feature complement(407596..408810)
/locus_tag="VC0389"
/note="NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism]; Region: NhaP; COG0025"
/db_xref="CDD:223104"
gene 409037..412717
/gene="metH"
/locus_tag="VC0390"
/db_xref="GeneID:2614987"
CDS 409037..412717
/gene="metH"
/locus_tag="VC0390"
/EC_number="2.1.1.13"
/note="one of two methionine synthases in Escherichia
coli; MetH catalyzes a methyl transfer reaction from
methyltetrahydrofolate to homocysteine to create
methionine; requires zinc for activity"
/codon_start=1
/transl_table=11
/product="B12-dependent methionine synthase"
/protein_id="NP_230044.1"
/db_xref="GI:15640417"
/db_xref="GeneID:2614987"
/translation="MGKEVRQQLEQQLKQRILLIDGGMGTMIQSYKLQEEDYRGARFV
DWHCDLKGNNDLLVLTQPQIIKEIHSAYLEAGADILETNTFNSTTIAMADYDMQSLSA
EINFAAAKLAREVADEWTAKDPSRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGL
VEAYSESTRALIKGGSDLILIETIFDTLNAKACAFAVDSVFEELGISLPVMISGTITD
ASGRTLSGQTTEAFYNALRHVRPISFGLNCALGPDELRQYVEELSRISECYVSAHPNA
GLPNAFGEYDLSAEEMAEHIAEWAQAGFLNLVGGCCGTTPEHIAAIAKAVEGVKPRAL
PDLKVECRLSGLEPLNIGPETLFVNVGERTNVTGSARFKRLIKEEQYDEALDVAREQV
ENGAQIIDINMDEGMLDAEACMVRFLNLCASEPEISKVPVMVDSSKWEVIEAGLKCIQ
GKGIVNSISLKEGKEKFIAQAKLVRRYGAAVIVMAFDEVGQADTRERKLEICRRAYHI
LVDEVGFPPEDIIFDPNIFAVATGIDEHNNYALDFINAVADIKRELPHAMISGGVSNV
SFSFRGNNYVREAIHAVFLYHCFKHGMDMGIVNAGQLEIYDNVPLKLREAVEDVILNR
RSDGTERLLEIAEAYRENSVGKEEDASALEWRAWPVAKRLEHALVKGITEFIVQDTEE
ARQQASKPLEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFINAQ
KSGSTSNGKILLATVKGDVHDIGKNIVGVVLQCNNFEIIDLGVMVPCEQILKVAREQN
VDIIGLSGLITPSLDEMVHVAKEMERQGFELPLLIGGATTSKAHTAVKIEQNYHAPVV
YVNNASRAVGVCTSLLSDEQRPGFIERLDLDYERTRDQHARKTPKSRPVTLEQARANK
AALDWANYTPPAPAKPGVHVFENIALATLRPYIDWTPFFMTWSLMGKYPAILEHEEVG
EEAKRLFHDANALLDKVEREGLLKASGMCALFPAASVGDDIEVYSDESRTQVAHVLYN
LRQQTEKPKGANYCLSDYVAPKESGKRDWIGAFAVTGGIGERALADAYKAQGDDYNAI
MIQAVADRLAEAFAEYLHEKVRKEIWGYASDENLSNDDLIRERYQGIRPAPGYPACPE
HTEKATLWQMLNVEETIGMSLTTSYAMWPGASVSGWYFSHPDSRYFAVAQIQPDQLHS
YAERKGWRLEEAEKWLAPNLDA"
misc_feature 409037..412711
/gene="metH"
/locus_tag="VC0390"
/note="B12-dependent methionine synthase; Provisional;
Region: metH; PRK09490"
/db_xref="CDD:236539"
misc_feature 409040..410020
/gene="metH"
/locus_tag="VC0390"
/note="Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism]; Region: MetH; COG0646"
/db_xref="CDD:223719"
misc_feature 410105..410866
/gene="metH"
/locus_tag="VC0390"
/note="MeTr subgroup of pterin binding enzymes. This
family includes cobalamin-dependent methyltransferases
such as methyltetrahydrofolate, corrinoid iron-sulfur
protein methyltransferase (MeTr) and methionine synthase
(MetH). Cobalamin-dependent...; Region: MeTr; cd00740"
/db_xref="CDD:238381"
misc_feature order(410129..410131,410339..410341,410402..410404,
410408..410410,410486..410488,410603..410605,
410720..410722,410732..410734,410825..410827,
410831..410833)
/gene="metH"
/locus_tag="VC0390"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238381"
misc_feature 411014..411652
/gene="metH"
/locus_tag="VC0390"
/note="B12 binding domain of methionine synthase. This
domain binds methylcobalamin, which it uses as an
intermediate methyl carrier from methyltetrahydrofolate
(CH3H4folate) to homocysteine (Hcy); Region:
methionine_synthase_B12_BD; cd02069"
/db_xref="CDD:239020"
misc_feature order(411119..411121,411131..411133,411182..411184,
411191..411193,411305..411325,411332..411334,
411443..411451,411455..411463,411542..411544,
411608..411610,411617..411619,411626..411628)
/gene="metH"
/locus_tag="VC0390"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:239020"
misc_feature 411314..411316
/gene="metH"
/locus_tag="VC0390"
/note="cobalt ligand [ion binding]; other site"
/db_xref="CDD:239020"
misc_feature 412205..412618
/gene="metH"
/locus_tag="VC0390"
/note="Vitamin B12 dependent methionine synthase,
activation domain; Region: Met_synt_B12; pfam02965"
/db_xref="CDD:111813"
gene complement(412790..414145)
/locus_tag="VC0391"
/db_xref="GeneID:2614988"
CDS complement(412790..414145)
/locus_tag="VC0391"
/EC_number="2.7.2.4"
/note="catalyzes the formation of 4-phospho-L-aspartate
from L-aspartate and ATP; functions in amino acid
biosynthesis; lysine sensitive"
/codon_start=1
/transl_table=11
/product="aspartate kinase"
/protein_id="NP_230045.2"
/db_xref="GI:229220822"
/db_xref="GeneID:2614988"
/translation="MSTFNVAKFGGTSVANFEAMSRCSAIIENNPQTRLVVSSACSGV
TNLLVELANGVASTERRQAILQQLADIHYVIIDQLADPTRVEKEVKAVLDSVASAAEA
ASFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDDHYGRAEPQL
KEIAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGL
EIWTDVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVF
VGSSKEPEKGGTWIRKQVESAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILA
KHKISVDLITTSEISVSLTLDKTDTSGGAPELPEAVRAELEELCTVEVEYNLCLIALI
GNKMKESRGYAKQVFSVLEDYNLRMICYGASAHNLCFLLHESVSKQAVQKLHKELFEQ
E"
misc_feature complement(412796..414136)
/locus_tag="VC0391"
/note="aspartate kinase III; Validated; Region: PRK09084"
/db_xref="CDD:236376"
misc_feature complement(413273..414136)
/locus_tag="VC0391"
/note="Amino Acid Kinases (AAK) superfamily, catalytic
domain; present in such enzymes like N-acetylglutamate
kinase (NAGK), carbamate kinase (CK), aspartokinase (AK),
glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK
superfamily includes kinases that...; Region: AAK;
cl00452"
/db_xref="CDD:241871"
misc_feature complement(order(413462..413467,413474..413479,
414110..414118,414122..414124))
/locus_tag="VC0391"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:239033"
misc_feature complement(order(413537..413545,414023..414031,
414113..414118,414122..414124))
/locus_tag="VC0391"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239033"
misc_feature complement(412997..413221)
/locus_tag="VC0391"
/note="ACT domains located C-terminal to the catalytic
domain of the lysine-sensitive aspartokinase isoenzyme
AKIII; Region: ACT_AKiii-LysC-EC_1; cd04932"
/db_xref="CDD:153204"
misc_feature complement(order(413105..413110,413123..413131,
413168..413173,413180..413182,413189..413191))
/locus_tag="VC0391"
/note="lysine allosteric regulatory site; other site"
/db_xref="CDD:153204"
misc_feature complement(order(413075..413077,413081..413083,
413105..413107,413111..413125,413129..413131,
413135..413137,413156..413158,413165..413170,
413177..413185))
/locus_tag="VC0391"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153204"
misc_feature complement(412799..412990)
/locus_tag="VC0391"
/note="ACT domains located C-terminal to the catalytic
domain of the lysine-sensitive aspartokinase isoenzyme
AKIII; Region: ACT_AKiii-LysC-EC_2; cd04917"
/db_xref="CDD:153189"
misc_feature complement(order(412877..412906,412910..412915,
412925..412927,412934..412948,412952..412957))
/locus_tag="VC0391"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153189"
gene 414609..415727
/locus_tag="VC0392"
/db_xref="GeneID:2614989"
CDS 414609..415727
/locus_tag="VC0392"
/note="similar to SP:P31030 PID:164759; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="class V aminotransferase"
/protein_id="NP_230046.1"
/db_xref="GI:15640419"
/db_xref="GeneID:2614989"
/translation="MTIRSFIPPHRILMGPGPSAISPQVLQALSRPTVGHLDPLFIGM
MDELKQLLKYAFQTENEFTIAVSAPGSAGMEACFVNLVEPGDKVIVCRNGVFGERMRD
NAVRCGAEVVVVDDEWGCPVSVEKVQATIDEHPDAKILAFVQAETSTGALSDAQALGA
LAKQHGLLTIVDAVTSLGGVPLLVDEWQLDAVYSGSQKCLSCVPGLAPLTFSPRAIEK
IQSRKTPIQSWFLDQSLVLGYWSGAGKRSYHHTAPVNSLYALHEALLLLQQEGLEHAW
QRHRLMHEKLKQGLEQLGFQFVVAEPYRLPQLNAIYVPEGIEEAKVRSHLLNEYNLEI
GAGLGALAGKAWRIGVMGYGARSENIALCLRALEESLR"
misc_feature 414642..415724
/locus_tag="VC0392"
/note="Alanine-glyoxylate aminotransferase (AGAT) family.
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to alanine-glyoxylate
aminotransferase (AGAT); Region: AGAT_like; cd06451"
/db_xref="CDD:99744"
misc_feature order(414684..414686,414693..414695,414714..414716,
414720..414722,414810..414815,414831..414833,
414903..414905,414912..414914,414924..414929,
415197..415199,415218..415220,415296..415298,
415356..415367,415587..415589)
/locus_tag="VC0392"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99744"
misc_feature order(414813..414821,414894..414896,415047..415049,
415122..415124,415128..415130,415197..415202)
/locus_tag="VC0392"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99744"
misc_feature 415200..415202
/locus_tag="VC0392"
/note="catalytic residue [active]"
/db_xref="CDD:99744"
gene complement(415806..417599)
/locus_tag="VC0393"
/db_xref="GeneID:2614990"
CDS complement(415806..417599)
/locus_tag="VC0393"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230047.1"
/db_xref="GI:15640420"
/db_xref="GeneID:2614990"
/translation="MNCMATLLLSGTRLEPHAPNLPLNKPFLFALAVVYLLAMHFFMP
NPGGAGLALSFNTTVWIATSITLAIGLYQLANNQALRYSKLTIGLWLSCALLTLPITY
SNADWFHTLGRLVGLWAGFTLFLVLQQFRFSNKHKQRLLWFILLGSVIEAVIGLIQYF
WLEPGNPFGYDTEANRPYGIFQQPNVMASFLATGLVLSGYLLARQPEKYDSRWSKIGI
LYATPLLTAPLLVVLASRTGWLASLLSIALVAPYLYRFASRRRFTLWLLAITLGICAG
FTAMYGQGTSGFVANKADLESPRRFTFPQTIDMIIEKPFTGYGYGKFEAQYLLYTARQ
HQLNSSYPAGLASMDHPHNELLYWGVEGGLLPVMGILLAACFCALRIYAAKRGTRMAM
LALFVPITLHAQLEYPFYHSAIHWITFIILIYWVDQRVARYRLASFTTLTKSLLRITS
LVLPIVTSLYMVTALHTNYVLTQFEKSQPLNPELLKNVTNPLVWQDRFDWDIYSTYLN
IGLHEQKAELIQPYIDWSLQIIQHKPRPAFYSNLILAYQGLGDTSRAQQIRREAEFLF
PNQDFSTVQYHPSIKVNSATSDAEVPSAATP"
misc_feature complement(416322..417485)
/locus_tag="VC0393"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:33116"
misc_feature complement(416505..416897)
/locus_tag="VC0393"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:203125"
misc_feature complement(415872..416432)
/locus_tag="VC0393"
/note="Domain of unknown function (DUF3366); Region:
DUF3366; pfam11846"
/db_xref="CDD:192852"
gene complement(417655..420477)
/gene="uvrA"
/locus_tag="VC0394"
/db_xref="GeneID:2614991"
CDS complement(417655..420477)
/gene="uvrA"
/locus_tag="VC0394"
/note="'The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. UvrA is an ATPase and a
DNA-binding protein. A damage recognition complex composed
of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities.
When the presence of a lesion has been verified by uvrB,
the uvrA molecules dissociate'"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit A"
/protein_id="NP_230048.1"
/db_xref="GI:15640421"
/db_xref="GeneID:2614991"
/translation="MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDT
LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
EVYDYLRLLYARVGEPRCPEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKG
EHVKTLENLAAQGFIRARIDGETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLA
ESFETALELSGGIVVVAPMEGDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGAC
PTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTP
FNKLSKKIQEIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSV
REELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQ
RAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVM
YVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVH
GGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKN
VDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFD
KVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCE
ACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREF
FDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILD
EPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLI
IAEGTPEDVAQIEASHTARFLKPLLN"
misc_feature complement(417658..420477)
/gene="uvrA"
/locus_tag="VC0394"
/note="excinuclease ABC subunit A; Reviewed; Region: uvrA;
PRK00349"
/db_xref="CDD:234734"
misc_feature complement(<420130..420468)
/gene="uvrA"
/locus_tag="VC0394"
/note="ATP-binding cassette domain I of the excision
repair protein UvrA; Region: ABC_UvrA_I; cd03270"
/db_xref="CDD:213237"
misc_feature complement(<419527..419730)
/gene="uvrA"
/locus_tag="VC0394"
/note="Cysteine-rich CPCC; Region: Cys_rich_CPCC;
pfam14206"
/db_xref="CDD:222593"
misc_feature complement(418756..>419094)
/gene="uvrA"
/locus_tag="VC0394"
/note="ATP-binding cassette domain I of the excision
repair protein UvrA; Region: ABC_UvrA_I; cd03270"
/db_xref="CDD:213237"
misc_feature complement(417781..418641)
/gene="uvrA"
/locus_tag="VC0394"
/note="ATP-binding cassette domain II of the excision
repair protein UvrA; Region: ABC_UvrA_II; cd03271"
/db_xref="CDD:213238"
gene complement(420633..421508)
/locus_tag="VC0395"
/db_xref="GeneID:2614992"
CDS complement(420633..421508)
/locus_tag="VC0395"
/note="similar to GB:U03751 PID:432985 SP:Q59633
PID:1345068; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="UTP-glucose-1-phosphate uridylyltransferase"
/protein_id="NP_230049.1"
/db_xref="GI:15640422"
/db_xref="GeneID:2614992"
/translation="MMIKKCLFPAAGYGTRFLPATKSMPKEMMPVVNKPLIEYGVDEA
IQAGITGMCIVTGRGKHSIMDHFDMNYELEHQIRGTNKEELLGDIRKIIESANFTFIR
QREMKGLGHAILTGKELVGDEPFAVVLADDLCVNEEQGVLAQMVALYKQFRCSIVAVQ
EVPENETHKYGVIAGEMIKDDLFRVDNMVEKPEPGTAPSNLAIIGRYILTPDIFDLIE
QTEPGKGGEIQITDALLKQAKAGCVLAYKFKGKRFDCGSVEGYIEATNFCYENMYKKN
DQKVELAKKSTHKGQ"
misc_feature complement(420714..421499)
/locus_tag="VC0395"
/note="Prokaryotic UGPase catalyses the synthesis of
UDP-glucose; Region: UGPase_prokaryotic; cd02541"
/db_xref="CDD:133021"
misc_feature complement(420654..421496)
/locus_tag="VC0395"
/note="dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane]; Region: RfbA; COG1209"
/db_xref="CDD:31402"
misc_feature complement(order(420816..420818,420900..420902,
420936..420941,420996..421001,421113..421118,
421122..421124,421182..421193,421200..421202,
421428..421433,421473..421484))
/locus_tag="VC0395"
/note="active site"
/db_xref="CDD:133021"
misc_feature complement(order(420714..420716,420720..420728,
420732..420740,420756..420758,420828..420830,
421002..421004,421191..421193,421197..421199,
421203..421208,421290..421295,421305..421307,
421311..421319,421323..421325,421395..421397,
421407..421415,421419..421427,421437..421445,
421449..421463,421470..421472))
/locus_tag="VC0395"
/note="tetramer interface; other site"
/db_xref="CDD:133021"
gene complement(421678..422322)
/locus_tag="VC0396"
/db_xref="GeneID:2614993"
CDS complement(421678..422322)
/locus_tag="VC0396"
/note="similar to PID:1147562 SP:P52106 GB:U00096
PID:1787277; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="LuxR family transcriptional regulator"
/protein_id="NP_230050.1"
/db_xref="GI:15640423"
/db_xref="GeneID:2614993"
/translation="MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLL
REYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFETILFNVEKRLRTEDLLTFGNLK
GLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL"
misc_feature complement(421684..422307)
/locus_tag="VC0396"
/note="DNA-binding transcriptional regulator CsgD;
Provisional; Region: PRK10100"
/db_xref="CDD:182241"
misc_feature complement(421690..421860)
/locus_tag="VC0396"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature complement(order(421717..421719,421750..421764,
421768..421773,421777..421782,421804..421812,
421849..421857))
/locus_tag="VC0396"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(order(421690..421695,421702..421704,
421711..421719,421810..421812,421816..421818,
421822..421824))
/locus_tag="VC0396"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 422614..423147
/locus_tag="VC0397"
/db_xref="GeneID:2614994"
CDS 422614..423147
/locus_tag="VC0397"
/note="binds to single stranded DNA and PriA helcase
facilitate replication restart"
/codon_start=1
/transl_table=11
/product="single-stranded DNA-binding protein"
/protein_id="NP_230051.1"
/db_xref="GI:15640424"
/db_xref="GeneID:2614994"
/translation="MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDK
ATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEV
VVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF"
misc_feature 422626..423144
/locus_tag="VC0397"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:223702"
misc_feature 422638..422928
/locus_tag="VC0397"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:239942"
misc_feature order(422638..422649,422722..422730,422773..422775,
422779..422781,422842..422844,422869..422871,
422902..422904,422911..422913)
/locus_tag="VC0397"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239942"
misc_feature order(422653..422661,422677..422679,422707..422709,
422728..422733,422767..422772,422776..422778,
422782..422784,422788..422790,422794..422796,
422833..422838,422860..422862,422866..422868,
422872..422877,422914..422916,422920..422922)
/locus_tag="VC0397"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:239942"
misc_feature order(422842..422844,422848..422850,422854..422856)
/locus_tag="VC0397"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239942"
gene 423262..425283
/locus_tag="VC0398"
/db_xref="GeneID:2614995"
CDS 423262..425283
/locus_tag="VC0398"
/note="regulates the degradation of the small RNAs CsrB
and CsrC; may function to targate RNase E to specific RNA
molecules"
/codon_start=1
/transl_table=11
/product="regulatory protein CsrD"
/protein_id="NP_230052.1"
/db_xref="GI:15640425"
/db_xref="GeneID:2614995"
/translation="MAQMRYTPTLKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQ
EYLNHYLQGIVEVVDKEMEDPDAAYSMQRWMPKMLQASGIIEMQLTSEAGPIYRFKDT
TNTIEASRLHQVALPLKRNPGYVMHFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIR
GLKWLKEQLLGSELLEERGRMILAGRVEQHAKGDPREWPFTASEALDRLIEELQDARQ
ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHGGVMMLRVDDLESAREE
SPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIK
LIERINPPEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQLQGVNAWSRFQKP
KQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQQG
ILKASRFSSALKRSAMKPCWDRAVFSSVVSFLKRSELVEPLSVNLHVVPFNDKRYARW
IRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVST
HYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQT
LQMLGVSGVQGRLFDEEQQMLPPLPPEPLKRPPRLSVKPIGKRNRWRTK"
misc_feature 423277..425193
/locus_tag="VC0398"
/note="regulatory protein CsrD; Provisional; Region:
PRK11059"
/db_xref="CDD:182935"
misc_feature 423961..424419
/locus_tag="VC0398"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(424057..424059,424192..424194)
/locus_tag="VC0398"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(424096..424098,424108..424110,424180..424182,
424186..424197)
/locus_tag="VC0398"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(424168..424170,424252..424254)
/locus_tag="VC0398"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 424483..425175
/locus_tag="VC0398"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 425296..426735
/locus_tag="VC0399"
/db_xref="GeneID:2614996"
CDS 425296..426735
/locus_tag="VC0399"
/note="similar to PID:791156 PID:791153; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshI"
/protein_id="NP_230053.1"
/db_xref="GI:15640426"
/db_xref="GeneID:2614996"
/translation="MKKPSWIEKLIAPKVASQQLYVVVQPEHLYFTSDDLSPIPPQPL
QQQSWQAVLVQTLQKHAVHDVQIHLVLHSQLYQTYQIEQPSIPREEWSAALPFLLKDM
LSEKVTDVVADAHPLPGSGKVQAYVISKRTILELQSMAVSAGLTLGRVIPEQAIWGLV
GGELSHFLLLHRSMGGSFKLDAFVDRQCSFQRTLRGITAPVTDNAASALQLDSLALEL
QRSIDYLSAQLKGGSLQQLKVCCDGEDQQALITGLNERLSVRASGLDGEATICGEQLA
RYARNIPQETINFYQDHLKPKREKFTLTNLLLAWLALSVVLLLGYAGVGYQNWVIQQQ
WQEQQQHNQSLTEQAAHLRQQVAVHLPSPAKQAAIGRIKQEISSKQQALDAIGQFDVA
QQTGYSGVLNSLAQLARSDISLSSITLDSSQLNVQGLARDPAAIPNWISQFKQELHLM
GRSFEQLKIGRNDQDMITFELNTQRGEQR"
gene 426732..427382
/locus_tag="VC0400"
/db_xref="GeneID:2614085"
CDS 426732..427382
/locus_tag="VC0400"
/note="similar to PID:791156 PID:791154; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshJ"
/protein_id="NP_230054.1"
/db_xref="GI:15640427"
/db_xref="GeneID:2614085"
/translation="MKSGWQNFESRFSALSQREKVLITLCGSVLIVMMLLLGLIEPAL
KQGQARQLQMQTLTSSNLQLQGEIMALQAQLAKNPDQELDVELSQLTLQSQEISELLA
AKMTSMVAPSEMPNLLESVLKQGQQLKLVSLESLPAEPIVRATESRSESEYYIHPVRM
ELTGSYFAIRDYLQALEALPVKYYWRHFHYRVESYPQARVILEVYTLGSREEFIGG"
misc_feature 426918..>427271
/locus_tag="VC0400"
/note="Pilus assembly protein, PilO; Region: PilO;
cl01234"
/db_xref="CDD:242380"
gene 427375..427692
/locus_tag="VC0401"
/db_xref="GeneID:2614086"
CDS 427375..427692
/locus_tag="VC0401"
/note="similar to PID:791156 PID:791155; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshK"
/protein_id="NP_230055.1"
/db_xref="GI:15640428"
/db_xref="GeneID:2614086"
/translation="MVRYGVLLALIAVTYSYAGEDPTAPLGWVSPAKPELQKPSYPVP
TLQSIVCAEGRSCYAIIEQRVVAQGDVVNGYRVATIHPDQVKLTRAGKEWRLALFTLD
IKQ"
misc_feature 427465..427662
/locus_tag="VC0401"
/note="Type IV pilus biogenesis; Region: Pilus_PilP;
pfam11356"
/db_xref="CDD:221092"
gene 427707..429386
/locus_tag="VC0402"
/db_xref="GeneID:2614087"
CDS 427707..429386
/locus_tag="VC0402"
/note="similar to PID:791156; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshL"
/protein_id="NP_230056.1"
/db_xref="GI:15640429"
/db_xref="GeneID:2614087"
/translation="MRKIVLASVVTSLVGCSMGHRDPVEAKQALNQAINETNSRQIDQ
LPPSVEADLMPDMDTLTASEPKTLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVT
GRITLNLTDVTLDEALGVVRDLYGFEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGR
SLTSITTGTITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTN
ESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR
QVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLD
AIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY
VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQT
KKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVP
ALGHLFRNTTKLTQKTELVILLKPTVVGVNTWQKELERSRSLLQEWFPDSQ"
misc_feature <428328..428450
/locus_tag="VC0402"
/note="Secretin N-terminal domain; Region: Secretin_N_2;
pfam07655"
/db_xref="CDD:219500"
misc_feature 428430..429311
/locus_tag="VC0402"
/note="pilus (MSHA type) biogenesis protein MshL; Region:
pilus_MshL; TIGR02519"
/db_xref="CDD:233908"
misc_feature 428781..429314
/locus_tag="VC0402"
/note="Bacterial type II and III secretion system protein;
Region: Secretin; pfam00263"
/db_xref="CDD:215826"
gene 429391..430236
/locus_tag="VC0403"
/db_xref="GeneID:2614088"
CDS 429391..430236
/locus_tag="VC0403"
/note="similar to PID:791156 PID:791157; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshM"
/protein_id="NP_230057.1"
/db_xref="GI:15640430"
/db_xref="GeneID:2614088"
/translation="MYLSHFGLEQLPFHLTPDTELFLGLAPHFEAIQTLSAAIEMGEG
VSKLTGEVGTGKTMVCRMLLTHLGDEVALIYLPNPMLSGEELRQAVAAELQLDVASPV
RVVEQIQTRLIELHQQGKRVVALVDEAQALSDEALETLRLFGNLETEQTKLLQIVLIG
QPELDVRLAQHHLRQFRQRITFNANLRPLTQAETEVYIESRLQKAQAPYPLFNATLKK
AVWRASQGIPRLINQICHKALLLAWHEQSPLVNQHHLFAAIHDTYDSCKPRFKTPILW
GWSKP"
misc_feature 429391..430164
/locus_tag="VC0403"
/note="Type II secretory pathway, component ExeA
(predicted ATPase) [Intracellular trafficking and
secretion]; Region: ExeA; COG3267"
/db_xref="CDD:225806"
misc_feature 429532..429939
/locus_tag="VC0403"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 429538..429561
/locus_tag="VC0403"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(429541..429564,429769..429771,429871..429873)
/locus_tag="VC0403"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 429757..429774
/locus_tag="VC0403"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 429913..429915
/locus_tag="VC0403"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 430215..431384
/locus_tag="VC0404"
/db_xref="GeneID:2614089"
CDS 430215..431384
/locus_tag="VC0404"
/note="similar to PID:791156 PID:791158; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshN"
/protein_id="NP_230058.1"
/db_xref="GI:15640431"
/db_xref="GeneID:2614089"
/translation="MGMEQTMSVVNEALAKSAQRSHSRLSNIERIDVAKPKARPAWLW
VMLGFGVSLAVGGWSISLQSVDTIPSSAEVVRPEVPSPTQKTTQQSIALYQAPVNSEA
LVKNETLVQKETLPKNETSVKNAVLAKVEGSPTSLKQTANRQREQTALGSELNAEPVL
NLVDNSEPSFFEEEVSSLPSSSPVMIVEQVSLTPEQLAQKALQRAQKAMESNELQTAV
SAYTEALRYTPHDEMARQKLAALYYGKGDGRKAFDLMQAGIERNPDGEVLRLALAKLL
VKEKQEASALVPLAYLPSQPSIEYLSLRAALAQKTKQDEIARESYQQLTEKDPNNGRW
WLGLAIQQERALQWPAAQHAYQQALNKVGLSSQSQAFIHQRLQLLASLEETQSAN"
misc_feature 430839..431003
/locus_tag="VC0404"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 430923..431294
/locus_tag="VC0404"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(430923..430925,430932..430937,431118..431123,
431127..431132,431139..431144,431220..431225,
431232..431237,431244..431249)
/locus_tag="VC0404"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(430929..430931,430965..430967,430977..430979,
430986..430988,431127..431129,431163..431165,
431175..431177,431184..431186,431229..431231,
431265..431267,431277..431279,431286..431288)
/locus_tag="VC0404"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature 431103..431294
/locus_tag="VC0404"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
gene 431374..433101
/locus_tag="VC0405"
/db_xref="GeneID:2614090"
CDS 431374..433101
/locus_tag="VC0405"
/note="similar to PID:791156 PID:791159; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshE"
/protein_id="NP_230059.1"
/db_xref="GI:15640432"
/db_xref="GeneID:2614090"
/translation="MPINKLRKRLGDLLVEEGIVSEAQLEQALNAQKNTGRRLGDTLI
SLGFLSETQLLNFLAQQLSLPVIDLSRAHVDIDAVPLLPEVHARRLRALVIGRSGDTL
RIAMSDPADLFAQEALLNQLPDYGFEFVIAPEKQLVDGFDRYYRRTKEIVSFAEQLHA
EHKTNDSFDFEITDSDSDEVTVVKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDG
VLHETLLHEVNIASALVLRLKLMANLDISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQ
HGESVVMRLLNQSAGVRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLY
GALNELNTSGKKIITAEDPVEYRISRINQVQVNPKINLDFSTLLRTFLRQDPDIILVG
EMRDQETVEIGLRAALTGHLVLSTLHTNDAVDSALRLIDMGAPGYLVASAVRAVVAQR
LVRKVCPDCSGHDEVDEARRQWLVTRFPNQAAAKFTRGRGCQNCNLTGYRGRIGVFEM
LELDQPMMDCLRANDAVAFSKAARSNTDYKPLLASAMELALQGIVSLDEVMSLGEGDS
SGLVEPIYL"
misc_feature 431500..431826
/locus_tag="VC0405"
/note="Type II secretion system (T2SS), protein E,
N-terminal domain; Region: T2SE_Nter; pfam05157"
/db_xref="CDD:218471"
misc_feature 431563..433056
/locus_tag="VC0405"
/note="Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and secretion
/ Intracellular trafficking and secretion]; Region: PulE;
COG2804"
/db_xref="CDD:225363"
misc_feature 432082..432879
/locus_tag="VC0405"
/note="RecA-like NTPases. This family includes the NTP
binding domain of F1 and V1 H+ATPases, DnaB and related
helicases as well as bacterial RecA and related eukaryotic
and archaeal recombinases. This group also includes
bacterial conjugation proteins and...; Region:
RecA-like_NTPases; cl17233"
/db_xref="CDD:247787"
misc_feature order(432340..432345,432355..432363)
/locus_tag="VC0405"
/note="Walker A motif; other site"
/db_xref="CDD:238540"
misc_feature order(432343..432345,432355..432363,432418..432420,
432424..432429,432547..432552)
/locus_tag="VC0405"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238540"
misc_feature 432535..432549
/locus_tag="VC0405"
/note="Walker B motif; other site"
/db_xref="CDD:238540"
gene 433110..434333
/locus_tag="VC0406"
/db_xref="GeneID:2614091"
CDS 433110..434333
/locus_tag="VC0406"
/note="similar to PID:1016255 PID:1016256; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshG"
/protein_id="NP_230060.1"
/db_xref="GI:15640433"
/db_xref="GeneID:2614091"
/translation="MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQ
GAAEKSAFDFNWKALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQL
KAALDSVCNELTNGRNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQ
EVETRKRIKTAMRYPTFVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITT
SDFFVNYWGLLLGIIVGLLFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFA
RTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTP
LVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLAL
GIFLPMWGMMDALKG"
misc_feature 433110..434327
/locus_tag="VC0406"
/note="Type II secretory pathway, component PulF [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PulF; COG1459"
/db_xref="CDD:224376"
misc_feature 433323..433694
/locus_tag="VC0406"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
misc_feature 433932..434300
/locus_tag="VC0406"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
gene 434336..434788
/locus_tag="VC0407"
/db_xref="GeneID:2614092"
CDS 434336..434788
/locus_tag="VC0407"
/note="similar to GB:X77217 PID:496757; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA biogenesis protein MshF"
/protein_id="NP_230061.1"
/db_xref="GI:15640434"
/db_xref="GeneID:2614092"
/translation="MKIGFERVRFVLWFVLVVVLLTAMFSVWRSMFSDMLHTALEMTR
LQLIDRANTYKQEWVLQGRPALLQIEQAEIPMQHGWVFPKLDQGVDCEKVLFLLYPDR
KVLDWLPRVTALQRANGYQCRYQYGDRVQLDVELKDRYFAINASFLMR"
gene 434833..435423
/locus_tag="VC0408"
/db_xref="GeneID:2614093"
CDS 434833..435423
/locus_tag="VC0408"
/note="similar to GB:X77217 PID:496758; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA pilin protein MshB"
/protein_id="NP_230062.1"
/db_xref="GI:15640435"
/db_xref="GeneID:2614093"
/translation="MHAVRYVSELKNMKKMQQGFSLVELVIVIVVVGLLAVAALPRFL
DVTDEAKKASIEGVAGGFATGVLSARAQWEAQARPTLTANNYPSINYDGVNFWLTTSA
TSGYRDGYPLGLNTDDATYPSGLTDQACIDLMNNLLQNPPQVGTETQAASNSNYKYSA
KANSGAATCTYAQNEKGSQHEFVYEVNTGRVTVTLQ"
gene 435449..435985
/locus_tag="VC0409"
/db_xref="GeneID:2614094"
CDS 435449..435985
/locus_tag="VC0409"
/note="similar to GP:673504; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="MSHA pilin protein MshA"
/protein_id="NP_230063.1"
/db_xref="GI:15640436"
/db_xref="GeneID:2614094"
/translation="MVIMKRQGGFTLIELVVVIVILGILAVTAAPRFLNLQGDAREAS
LEGLRGAVAGAMGISYGRAAIKGIETLDYTAYTDANTPGTVIDGIAHKFGYPTAVNDS
TANLGGIMQTLDTSSEFIALQSSTGTNSNQANLWIDIGFNGYNDLCVRYTAATSNNPA
TVAMQTGVAGTACGKPAQ"
misc_feature 435449..>435709
/locus_tag="VC0409"
/note="Type II secretory pathway, pseudopilin PulG [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PulG; COG2165"
/db_xref="CDD:225076"
gene 436022..436510
/locus_tag="VC0410"
/db_xref="GeneID:2614095"
CDS 436022..436510
/locus_tag="VC0410"
/note="similar to GB:X77217 PID:496759; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA pilin protein MshC"
/protein_id="NP_230064.1"
/db_xref="GI:15640437"
/db_xref="GeneID:2614095"
/translation="MKIIGKGFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQS
EILASLRLTQSRAMQRTGYCNRWLLTSNAAIQVSPQAMQGSCLSVFPSNPTDPSWVDA
AVSGVALSLAGSGGASFLDFDSLGRATQCISAGCTVSISSSTHNEVRQVCINTEGYIY
AC"
gene 436458..437069
/locus_tag="VC0411"
/db_xref="GeneID:2614096"
CDS 436458..437069
/locus_tag="VC0411"
/note="similar to GB:X77217 PID:673506 PID:673507;
identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="MSHA pilin protein MshD"
/protein_id="NP_230065.1"
/db_xref="GI:15640438"
/db_xref="GeneID:2614096"
/translation="MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVG
VTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGR
TLCSAPSALGKDTGESNNTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFY
VSDNGGQFSATPATERTHYKRIALVIYDPQGNAYPFAAIKGNY"
gene 437069..437839
/locus_tag="VC0412"
/db_xref="GeneID:2614097"
CDS 437069..437839
/locus_tag="VC0412"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230066.1"
/db_xref="GI:15640439"
/db_xref="GeneID:2614097"
/translation="MSRGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREAL
IQQGRFLTERMSRELREAVPNSVIVANGCIEFLPIVNSAIYQSLPTNTVNTLRLLPIT
KSIQAGERLVISPNDPAALRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLF
TLQSPANRAYFYTTPVAYCYQGNSIYRYAGYSLNRTALSPAYLGNGVLMAQSLSGANF
SVLAPQLQRNGLVKIELTFADKGEQVRFDHDALVYNTP"
gene 437805..438236
/locus_tag="VC0413"
/db_xref="GeneID:2614098"
CDS 437805..438236
/locus_tag="VC0413"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230067.1"
/db_xref="GI:15640440"
/db_xref="GeneID:2614098"
/translation="MIMMLWSTTHRKQQGNALILVVFIIVVVGFVALVANRNQARSSQ
QLVSMVLGTRAEMAARSALNIELSRFYQSNKSAGSCYTTSPQSMDFAGEGLAQCEATV
SCLSLGALDNGQAVYQLSATGRCQVGDWSLQRIIEVGVKSE"
gene 438229..441987
/locus_tag="VC0414"
/db_xref="GeneID:2614099"
CDS 438229..441987
/locus_tag="VC0414"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230068.1"
/db_xref="GI:15640441"
/db_xref="GeneID:2614099"
/translation="MNKWLAKTLVGLGCFALLSAYALAFQDIDHSIYFPSVVQGHGSC
SGAPNPQLIQYNSARINGTNNSVVDFCSINATNERPNTRCDNNLCQVSGNTVPSLSLA
GINAFKTSSVSGTEIGWCNSGQSILLSKTNIGTVQLYASCTLSFTGQTEYKIKSLDMG
SGATLVLSSGDYWIESLQLNQGGEVVVDGDVRLFIRNNSDWNSAQINVSGSGNLTIVG
YNNITLNQSNQVKAYLYVGGTLTLHNTSVINGRVTSRRLFMEANTEINQNEQQGYACF
TDDFNRSSLGQNWIPYTSSGNFTPSIISNRMRLTEAITNQATAVTYQRIFPAAGNLVT
VEFDYYAWANLTGNGADGVSVIFSDATVTPRTGGFGGSLGYAQRTDTNPDTPGFAGGW
LGVGLDEWGNYSNATEGRQGGPGFRQQAVAIRGSESANYQYLVGTAANLNPKLDVRRT
CQWWGCSFSGAGPGHRYFITIDSRSGGGVWVRVDRSVNGTMQTVIDWHNVLSNPNQGA
TPADFLLSLAGSTGASVNNHEIENFKVCALKSRPVGQLIDHFRFTLPQQGLTCSASEV
QIKACANDNCSQLYTDPVTATLSPNSAPSATGGWLGGSQVNFNNGIATAQLRRNSVGN
VSVNVLGSTPASKPFQVNLCSYTNNPNSYSTANCTVNFADSGFIVDVPNAYANQTVTG
TIKAVRKDNASQQCLPSFGNVQKSVAFWSEYLNPTANNSGFQSVSVGVNGTPIGQSAN
NATSISLNFNQNGEASFPISYREVGSLALHARFTGSGDEQDLLLEGQDSFIRVPRALV
LSANNPYNPTHPNGQCSAENISCNVFARADENFDLIIRAVVAAPIEDNDFTNNLTAYN
YQQQNIALQHTLVQPSAGQSGVLGVNEYTHLLGGTTTIAQKVSEVGVFDFSLFAPTHY
LGLDLASANLPIAVTSTGSIGRFIPAYFSVSPMSNVTLDAACKTGNAFSYLGQPFEYS
NSPGLYLQPKSANNADTQNYLIDPWWRYNNQWNGRTYSDSANGVNLGFDNLQTSPISR
QALNNSGIVLNGERVWYQKPLQPKPVFNSAFDLTLNASNLTDQDGVCYRQNASSPCLG
YTFSHIDGAMPLYWGKLVIQDVYGPETQASEQPIYVEHFTNNGFVRTIEDSCTALPAI
TGFTLQSDPNNNGYTVLTTGVAVPPQVLAEHSAANLNSGQRAIRFSAPGAGALGVIDS
VLDLNAHNLLWLAEDKDGDNNFDQTTQGRAQFGLYRGSDRVIWWRESN"
misc_feature 439051..439839
/locus_tag="VC0414"
/note="legume lectins; Region: lectin_L-type; cl14058"
/db_xref="CDD:246613"
misc_feature order(439051..439053,439057..439059,439090..439092,
439192..439194,439201..439203,439516..439518,
439630..439632,439666..439668,439672..439677,
439723..439725)
/locus_tag="VC0414"
/note="homotetramer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:173886"
misc_feature order(439051..439059,439090..439092,439192..439194,
439198..439200)
/locus_tag="VC0414"
/note="homodimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:173886"
misc_feature order(439279..439281,439792..439794)
/locus_tag="VC0414"
/note="carbohydrate binding site [chemical binding]; other
site"
/db_xref="CDD:173886"
misc_feature order(439414..439416,439420..439422,439492..439494)
/locus_tag="VC0414"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173886"
gene 442155..443198
/locus_tag="VC0415"
/db_xref="GeneID:2614100"
CDS 442155..443198
/locus_tag="VC0415"
/note="functions in MreBCD complex in some organisms"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein MreB"
/protein_id="NP_230069.1"
/db_xref="GI:15640442"
/db_xref="GeneID:2614100"
/translation="MFKKLRGMFSNDLSIDLGTANTLIYVKGQGIVLDEPSVVAIRQD
KGRGGKTVAAVGHAAKQMLGRTPGNISAIRPMKDGVIADFYVTEKMLQHFIRQVHDNS
VLKPSPRVLVCVPCGSTQVERRAIRESALGAGAREVYLIDEPMAAAIGAGLRVSEPTG
SMVIDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAEKI
KHEIGSAYPGDDVQEIEVRGRNLAEGVPRSFTLNSNEILEALQEPLTGIVSAVMVALE
QCPPELASDISENGMVLTGGGALLKDLDRLLMEETGIPVVIADDPLTCVARGGGKALE
MIDMHGGDLFSEE"
misc_feature 442170..443189
/locus_tag="VC0415"
/note="rod shape-determining protein MreB; Provisional;
Region: PRK13927"
/db_xref="CDD:237562"
misc_feature 442191..443165
/locus_tag="VC0415"
/note="MreB and similar proteins; Region: MreB_like;
cd10225"
/db_xref="CDD:212668"
misc_feature order(442200..442202,442206..442217,442389..442391,
442581..442583,442647..442649,442653..442664,
442725..442730,442800..442802,442809..442814,
443037..443045,443049..443054,443118..443120,
443127..443129)
/locus_tag="VC0415"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212668"
misc_feature order(442200..442202,442647..442649)
/locus_tag="VC0415"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:212668"
misc_feature order(442278..442280,442338..442340,442362..442364,
442626..442628,442632..442634,442692..442694,
442788..442790,442794..442796,442863..442865,
442887..442889,442896..442898,442986..442988,
442995..442997,443091..443093,443163..443165)
/locus_tag="VC0415"
/note="putative protofilament interaction site
[polypeptide binding]; other site"
/db_xref="CDD:212668"
misc_feature order(442608..442613,442635..442637,443013..443021,
443094..443096,443100..443102,443109..443111)
/locus_tag="VC0415"
/note="RodZ interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212668"
gene 443255..444145
/locus_tag="VC0416"
/db_xref="GeneID:2614101"
CDS 443255..444145
/locus_tag="VC0416"
/note="in some organisms this protein is a transmembrane
protein while in others it is periplasmic; involved in
some organisms with other components of the MreBCD complex
and with penicillin binding proteins in the periplasm or
cell wall"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein MreC"
/protein_id="NP_230070.1"
/db_xref="GI:15640443"
/db_xref="GeneID:2614101"
/translation="MKPIFGRGPSLQLRLFFAVMLSASLMLADSRLGAFSHVRFLLNS
LVAPIQYAADLPRVLFDDFYDSISSHQQLRENNQLLKREVLTLKSNLLLLEQYKEENQ
RLRKLLGSSFLRDEKKVVTEVMAVDTSPYRHQVVIDKGRVDGVYEGQPIINEKGIVGQ
VTFVAAHNSRVLLLIDPNTAIPVQNIRNDIRVIASGNGQTDQIQLEHIPTSTDIEVGD
MLVTSGLGGVYPEGYPVAIVSQVDKDTRREFASIKADPVVEFDRLRYLLLIWPNEDRL
QKVMQADPQVLLEEEANAQQ"
misc_feature 443258..444079
/locus_tag="VC0416"
/note="rod shape-determining protein MreC; Provisional;
Region: PRK13922"
/db_xref="CDD:237560"
misc_feature 443618..444070
/locus_tag="VC0416"
/note="rod shape-determining protein MreC; Region: MreC;
pfam04085"
/db_xref="CDD:217883"
gene 444132..444620
/locus_tag="VC0417"
/db_xref="GeneID:2614102"
CDS 444132..444620
/locus_tag="VC0417"
/note="part of cell wall structural complex MreBCD;
transmembrane component"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein MreD"
/protein_id="NP_230071.1"
/db_xref="GI:15640444"
/db_xref="GeneID:2614102"
/translation="MLSSDIKGRMVILASFLLALILQTIPWPGTLDLFRPPWLLLVCC
YWVLALPHRVNVGSALVMGLLWDLLLGSTLGIRGMMMSIIIYLVAMNFLVLRNMALWQ
QAIVIGLLSMGLEVLIFCGEYLIQNVTFNPLSLWSGVIACILWPWMFLLLRRVRRHWH
VK"
misc_feature 444132..444617
/locus_tag="VC0417"
/note="rod shape-determining protein MreD; Provisional;
Region: PRK11060"
/db_xref="CDD:182936"
gene 444563..445180
/gene="maf"
/locus_tag="VC0418"
/db_xref="GeneID:2614103"
CDS 444563..445180
/gene="maf"
/locus_tag="VC0418"
/note="Maf; overexpression in Bacillus subtilis inhibits
septation in the dividing cell"
/codon_start=1
/transl_table=11
/product="Maf-like protein"
/protein_id="NP_230072.1"
/db_xref="GI:15640445"
/db_xref="GeneID:2614103"
/translation="MAVDVFITAPSSTPLACEMTISKLVLASGSPRRRELLAQMGYQF
EVVVPNVEEKRAAAESPAQYVERLSRDKALAGAALVAAEAVVIGSDTIVVKDQQVLEK
PRDFADAKRMLLKLSGSQHQVMTGVSVTCRGITHSVVVTTEVWFKTLSEQEIEAYWQS
GEPCDKAGSYGIQGLGGRFVTRIEGSYHAVVGLPLYETDQLLHKF"
misc_feature 444629..445177
/gene="maf"
/locus_tag="VC0418"
/note="Maf-like protein; Region: Maf; pfam02545"
/db_xref="CDD:202278"
misc_feature 444632..445168
/gene="maf"
/locus_tag="VC0418"
/note="Nucleotide binding protein Maf. Maf has been
implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea, but homologs in
B.subtilis and S.cerevisiae are nonessential for cell
division. Maf has been predicted to be a nucleotide-
or...; Region: Maf; cd00555"
/db_xref="CDD:29954"
misc_feature order(444644..444646,444659..444661,444719..444721,
444776..444778,444830..444832,444866..444868)
/gene="maf"
/locus_tag="VC0418"
/note="active site"
/db_xref="CDD:29954"
misc_feature order(444758..444760,444962..444979)
/gene="maf"
/locus_tag="VC0418"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29954"
gene 445206..446675
/locus_tag="VC0419"
/db_xref="GeneID:2615680"
CDS 445206..446675
/locus_tag="VC0419"
/note="involved in the processing of the 5'end of 16S
rRNA"
/codon_start=1
/transl_table=11
/product="ribonuclease G"
/protein_id="NP_230073.1"
/db_xref="GI:15640446"
/db_xref="GeneID:2615680"
/translation="MSAELLLNVTPSETRVAMIEGGILQEIHIEREAKRGIVGNIYKG
KVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAESEKQQFQVRDISELVRQGQD
IVVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKKIVSH
YCDEHGGFIIRTAAEGANEKELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQR
ILRDFVGTELTKILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEI
QRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQ
LRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKR
TRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVAD
TLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDVVMM"
misc_feature 445206..446672
/locus_tag="VC0419"
/note="ribonuclease G; Provisional; Region: PRK11712"
/db_xref="CDD:183285"
misc_feature 445299..445589
/locus_tag="VC0419"
/note="S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of RNA.
In addition to its role in mRNA degradation, RNase E has
also been implicated in the processing of rRNA, and...;
Region: S1_RNase_E; cd04453"
/db_xref="CDD:239900"
misc_feature order(445332..445334,445497..445499,445509..445511)
/locus_tag="VC0419"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239900"
misc_feature order(445404..445406,445530..445532,445539..445541,
445548..445553,445581..445583)
/locus_tag="VC0419"
/note="oligonucleotide binding site [chemical binding];
other site"
/db_xref="CDD:239900"
gene 446688..450563
/locus_tag="VC0420"
/db_xref="GeneID:2615681"
CDS 446688..450563
/locus_tag="VC0420"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230074.1"
/db_xref="GI:15640447"
/db_xref="GeneID:2615681"
/translation="MISTVTRLGRILMWLLVSLLIVLALAVTALRILLPQMNRFQAEI
QHWLNQNSSVQVAIADVQGYWRNTHPSLSLQTLQAHWPDSNDIQLNAASVEIEFDLLQ
SLWQRQPVVADLTVNGLVLDLRAIDWLALEQNPNPKQSRQGRVVKQLDDLLLRQLDDF
TLKNSAILYRTFAGDLRQLDIEKLRWQNQGLRHFAEGVVSIAGININSLLVSANFIDH
GSLRDVSGDFYVSADKVRVLPWLTRYLKDQTGIQKGQVSLNAWATLEHNQPKDGYVEF
KPSELVWQNGEQTHELLLESGIVELKPTEKGWQVNAHSLRLRSDDELWPLLDVAMDWQ
PDEWRLNLSQLNIENLLPLAKLIPESQTLNHWLTTLKPKGTLEDVRIAKGATLESLRY
SASLIDGGIAQWELLPQVNALQAQIQGSPSKALIKASMVDDVLPYGEVFQAPLNIRQG
AVNLVWQQEQYGWSLWSDKVTVATPDLQALGAFRLDFPDDASPFLSFYAEADLFNAGE
TWRYLPTLALGRELTDYLSTAIQAGQVNTAKLIWYGALDQFPYRMHNGVFQAWVGLKE
AKFAFDTAWPPITDLQLDLLFENDAMYLDSRSATLMEVSAERITGRIPELAELGHIEI
EAVASAQQGNAIRNYMMATPLVDSVGAALTTIQVKGPVRSEFQLNIPFHSGAEPRAWG
FAELSNNAVDIDTPPMSLTSVSGKIEFDNDRVSAAGLDARLLKQPVSIDFKGEDAKRG
YAVGIDMVGDWEVKPLIPFVGERWLSRVKGHAPWQASVDIQLNDVGFTYQLDGKADLR
GLESRYPFPLKKALKVKGQALLQASGNQEMVSARLQLPQAKYQAEIDLTPKVPVLKAT
NLVLGQGSFKISPVVGHHVQLRSQAFNLDDWLSILNEKPAPKSRKSKLASLNTPAFPM
PERVDAAVKELTFAGLDWHDVDLNARRKDLGWLLNLDSQEIKGQANYIEPYDLSIALE
RLHLFLPQLEAGEEALLVDLDRQKLPLITDFDRKFHQWMPNLTLTIKDFWLQGYKIGQ
ANVDFQRQGDTLLWKSIDFTSGTNQLHVNGTWTLTDTQSRTQMNLDMKGDNNSDLMAR
FGINSGIQRAPFEITASTQWDGAPWSMQVNTLQGKVDTKLGKGVISDVSGAARLLGLF
SLDSIIRKMQLDFSDVFDKGMAFDSISGSGELSQGIFVTNNIKMDAVAGEMTIKGLAD
LNTRTVDAEVNFVPDITSGIPVLTAFAVTPQTALYVLAITTVISPVVEVFTQVNYEVK
GPLDSPTVKELSRSKGEFKLPEKLRKLTE"
misc_feature 446790..450527
/locus_tag="VC0420"
/note="TIGR02099 family protein; Region: TIGR02099"
/db_xref="CDD:162702"
misc_feature 449769..450494
/locus_tag="VC0420"
/note="AsmA-like C-terminal region; Region: AsmA_2;
pfam13502"
/db_xref="CDD:205680"
gene 450572..451399
/locus_tag="VC0421"
/db_xref="GeneID:2615682"
CDS 450572..451399
/locus_tag="VC0421"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230075.1"
/db_xref="GI:15640448"
/db_xref="GeneID:2615682"
/translation="MQRVGLVQMTSGPEISRNLTYLKQEVAKLAQQGAQWIVTPENAL
LLGNREQYHQQAESLDHGPVQHALASLAKEYGVWLLIGSMPIRHAEGVTTSSLLWNAQ
GERVAVYDKLHMFDVDVADGHQRYRESETFTPGQQVVVTSTPFGALGLSICYDVRFPH
LYADLRRQGAQILLVPAAFTAVTGQAHWEVLLRARAIETQCWVIAVGQTGHHPCGRET
WGHSMVISPWGEVIANLGAEVQSKVVEFDLATLDSVRRAMPITQHTRFTHQLIENTH"
misc_feature 450578..451369
/locus_tag="VC0421"
/note="nitrilase; Region: PLN02798"
/db_xref="CDD:215428"
misc_feature 450578..451366
/locus_tag="VC0421"
/note="Nit1, Nit 2, and related proteins, and the
Nit1-like domain of NitFhit (class 10 nitrilases); Region:
nit; cd07572"
/db_xref="CDD:143596"
misc_feature order(450692..450694,450851..450853,450902..450904,
450914..450916,450953..450955,451028..451033,
451037..451042,451103..451105)
/locus_tag="VC0421"
/note="putative active site [active]"
/db_xref="CDD:143596"
misc_feature order(450692..450694,450902..450904,451028..451030)
/locus_tag="VC0421"
/note="catalytic triad [active]"
/db_xref="CDD:143596"
misc_feature order(450905..450910,450971..450979,451031..451033,
451040..451054,451058..451063,451127..451132,
451139..451144,451148..451156,451160..451165,
451253..451255,451343..451348,451355..451360,
451364..451366)
/locus_tag="VC0421"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143596"
gene 451399..452844
/locus_tag="VC0422"
/db_xref="GeneID:2615683"
CDS 451399..452844
/locus_tag="VC0422"
/note="similar to SP:P46473 PID:606183 GB:U00096
PID:1732437 PID:1789640; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="tldD protein"
/protein_id="NP_230076.1"
/db_xref="GI:15640449"
/db_xref="GeneID:2615683"
/translation="MTMNQIETALLAPAGLTEQDIADTLSSIATRQIDYADIYFQSSW
HESLVLEDSIIKDGSFNIDCGVGVRAVSGEKTGFAYSDQIQLEGLKQSAIAARGIAQQ
GQNLTVQAFKRAQHPAFYGAHNPLESWEKQQKTELLKQLDAYIRTKEPLITEVSVSLS
GVHEQILVAATDGTYAGDIRPLVRLSISVLAQKGDRRERGSAGGGGRFGYDYFLQEEA
GQKIAFSFADEAIRQALVNLEAVAAPAGTMPVVLGSGWPGVLLHEAVGHGLEGDFNRK
GSSVFAGKVGKKVTSDLCTIVDDGTLKDLRGSLNVDDEGVSGQYNVLIEKGILKGYIQ
DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLPGEHTPEEIIASVKKGIYAPNFG
GGQVDITSGKFVFSASEAYLIENGKITRPIKGATLIGSGIEAMQQVSMVGNDLALDRG
VGVCGKAGQSVPVGVGQPTLKLDALTVGGTE"
misc_feature 451399..452838
/locus_tag="VC0422"
/note="protease TldD; Provisional; Region: tldD; PRK10735"
/db_xref="CDD:182685"
gene complement(452940..454163)
/locus_tag="VC0423"
/db_xref="GeneID:2615684"
CDS complement(452940..454163)
/locus_tag="VC0423"
/EC_number="3.5.3.6"
/note="catalyzes the degradation of arginine to citruline
and ammonia"
/codon_start=1
/transl_table=11
/product="arginine deiminase"
/protein_id="NP_230077.1"
/db_xref="GI:15640450"
/db_xref="GeneID:2615684"
/translation="MNRLYVGSEVGQLRRVLLNRPERALTHLTPSNCHELLFDDVLAV
EAAGVEHDAFANTLRTQDVEVLLLHDLLEETLAIPEARQWLLNTQISDFRFGPTFARE
LRHALNHLDDHHLTTLLLGGLAFSELHLESDSMLPKMRQPLDFVIEPLPNHLFTRDTS
CWVYGGVSLNPMMKPARQRETNHLRAIYRWHPIFAQHPFIHYFGIDDLHYDNANIEGG
DVLVIGKGAVLIGMSERTSPQGVENLAAALFKHGQASKVIAINLPKHRSCMHLDTVMT
HMDVDTFSVYPEVMRKDLPTWRLTPKGNNGDMRVEQVPSYLHAIEQALGVDYLKIITT
GGNSYEAEREQWNDANNVLTVKPGVVIGYERNVYTNEKYDKAGIKVLTIPGNELGRGR
GGARCMSCPIERDGI"
misc_feature complement(452943..454163)
/locus_tag="VC0423"
/note="arginine deiminase; Provisional; Region: PRK01388"
/db_xref="CDD:234949"
gene 454890..455312
/locus_tag="VC0424"
/db_xref="GeneID:2615685"
CDS 454890..455312
/locus_tag="VC0424"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230078.1"
/db_xref="GI:15640451"
/db_xref="GeneID:2615685"
/translation="MSHQDDYLSVEELIEIQKEETRDIIQALLEDGSDPDALYEIEHH
LFAEDFDKLEKAAVEAFKMGFEVLEAEETEDEDGNKLLCFDATMQSALDAKLIDEQVE
KLVNLAEKFDIIYDGWGTYYEGEDALYSDEDEDEDDEH"
misc_feature 454911..455276
/locus_tag="VC0424"
/note="RNase E inhibitor protein; Provisional; Region:
PRK11191"
/db_xref="CDD:236876"
misc_feature 454938..455249
/locus_tag="VC0424"
/note="Protein of unknown function (DUF1260); Region:
DUF1260; pfam06877"
/db_xref="CDD:219212"
gene 455459..456256
/locus_tag="VC0425"
/db_xref="GeneID:2615686"
CDS 455459..456256
/locus_tag="VC0425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230079.1"
/db_xref="GI:15640452"
/db_xref="GeneID:2615686"
/translation="MQLSLAGLWQLSPLTDLSIPQDDITFPAPLSAVLPKTLSEDDIA
QQEWHLMHDIEVDDDLLSFAAIDLVIEGIDYHAEVRLNGVALFDCDGSQAIYRKEIRS
LLKPGRNRFEILFLEVDEDGLLDEEESELCFLGEQDVPSYDQRMGIWKAPYLQCIRHL
RLTHVSTEQIWHHSGCELLVNLFFTTYSPGLVSAAVKFDGRTYQVPIDVRSDHASVLF
QVDAPKIYDVRHPRAEDLYLITVQLDGQVKRFRLGLSEAHCVSHFPL"
gene complement(456325..456708)
/locus_tag="VC0426"
/db_xref="GeneID:2615687"
CDS complement(456325..456708)
/locus_tag="VC0426"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230080.1"
/db_xref="GI:15640453"
/db_xref="GeneID:2615687"
/translation="MKKTLSFAAIHFTIAFTVAYVLTGDVIIGSLIAMLEPMVNTVAF
YFHEKAWVKSAALQRFAGDPRIKTASFATIHFTVAFSVAYLLTGSWLVGGVMAMIEPS
INTCAYYFHEKVWQSKHAGHLGCAH"
misc_feature complement(456478..456708)
/locus_tag="VC0426"
/note="Predicted membrane protein [Function unknown];
Region: COG3205"
/db_xref="CDD:225746"
misc_feature complement(456361..456513)
/locus_tag="VC0426"
/note="Predicted membrane protein (DUF2061); Region:
DUF2061; pfam09834"
/db_xref="CDD:150497"
gene complement(456859..457296)
/locus_tag="VC0428"
/db_xref="GeneID:2615689"
CDS complement(456859..457296)
/locus_tag="VC0428"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230082.1"
/db_xref="GI:15640455"
/db_xref="GeneID:2615689"
/translation="MYKHILVPVDLNEQGFADKAVQLAVWHAKHSNAEIHLLNVLPGI
HMSMVATYFPKDAAAQMKNDVRAQLKAFAEKHIAEEVVYKLHIAEGKPYATILDYAER
LGADLIVMPSHKRSRIDKVMLGSVASKVVENSPINVMVVKPQG"
misc_feature complement(456874..457287)
/locus_tag="VC0428"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature complement(order(456916..456927,456955..456960,
456964..456969,457177..457179,457267..457275))
/locus_tag="VC0428"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene complement(457418..459982)
/locus_tag="VC0429"
/db_xref="GeneID:2615690"
CDS complement(457418..459982)
/locus_tag="VC0429"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230083.1"
/db_xref="GI:15640456"
/db_xref="GeneID:2615690"
/translation="MTQTTTPSQDVQEMVAQADTGARAPKGLPGRVLWFVPLCWSLFQ
LWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRDRIPLTDWLLALA
GSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPPLMMVAALFLL
YTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVLFGAMLERA
GAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIPLMKRVG
FPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISYIALI
YIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFGDA
ATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLV
WCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVS
GARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILG
MGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAF
AAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITA
MLLFSAATQGWWLTKTKWWEVVALLVLTFTFFRPGFWWDMVYPAQVMYAGTKLEQIVE
QAPVGQPIQMIVAGENLKGEYTSKTVQLPFEDRAVSAQERIASMGLTLLNDKNRMLVE
MVEFGSPAEAAGIDFDWEIRSVVVDSDRPMKEWVFLPAILLTLLLAWNQKRRIKKA"
misc_feature complement(<458768..459967)
/locus_tag="VC0429"
/note="TRAP-type uncharacterized transport system, fused
permease components [General function prediction only];
Region: COG4666"
/db_xref="CDD:227012"
misc_feature complement(457748..>458698)
/locus_tag="VC0429"
/note="TRAP-type uncharacterized transport system, fused
permease components [General function prediction only];
Region: COG4666"
/db_xref="CDD:227012"
misc_feature complement(457421..457972)
/locus_tag="VC0429"
/note="Domain of unknown function (DUF3394); Region:
DUF3394; pfam11874"
/db_xref="CDD:152310"
gene complement(460153..461139)
/locus_tag="VC0430"
/db_xref="GeneID:2615691"
CDS complement(460153..461139)
/locus_tag="VC0430"
/note="similar to SP:P12920 PID:144105; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230084.1"
/db_xref="GI:15640457"
/db_xref="GeneID:2615691"
/translation="MKEGKFMSLPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGV
YYPTGGAICKLVNKDRKDHNIRCSVESTGGSIYNVNTIRSGELDFGIVQSDWQYHGYN
GTSEFAEQGPYKKLRAVFSMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRAT
MQVVMDAFGWNNDSFKLAAELKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAA
KLVPATGPEIEKIVANNPYYAYSVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVY
NLTKAVFENFDTFTRLHPAFANLKKEDMVTAGNSIPLHPGAVKYYKEAGLIK"
misc_feature complement(460162..461049)
/locus_tag="VC0430"
/note="TRAP-type uncharacterized transport system,
periplasmic component [General function prediction only];
Region: Imp; COG2358"
/db_xref="CDD:32505"
misc_feature complement(460165..461043)
/locus_tag="VC0430"
/note="TRAP transporter solute receptor, TAXI family;
Region: TRAP_TAXI; TIGR02122"
/db_xref="CDD:162713"
gene complement(461445..461915)
/locus_tag="VC0431"
/db_xref="GeneID:2615692"
CDS complement(461445..461915)
/locus_tag="VC0431"
/note="regulates arginine biosynthesis when complexed with
arginine by binding at site that overlap the promotors of
the arginine biosynthesis genes"
/codon_start=1
/transl_table=11
/product="arginine repressor ArgR"
/protein_id="NP_230085.2"
/db_xref="GI:161582026"
/db_xref="GeneID:2615692"
/translation="MRNVDKQDNLVRAFKALLKEERFGSQGDIVEALKNEGFDNINQS
KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTASSSLRELVLDVDYNNALVVIRTGP
GAAQLIARLLDSLGKSEGILGVVAGDDTIFITPTLDVPVKELFHSVCELFEYAG"
misc_feature complement(461448..461915)
/locus_tag="VC0431"
/note="arginine repressor; Provisional; Region: PRK05066"
/db_xref="CDD:179922"
misc_feature complement(461691..461900)
/locus_tag="VC0431"
/note="Arginine repressor, DNA binding domain; Region:
Arg_repressor; pfam01316"
/db_xref="CDD:201725"
misc_feature complement(461463..461666)
/locus_tag="VC0431"
/note="Arginine repressor, C-terminal domain; Region:
Arg_repressor_C; pfam02863"
/db_xref="CDD:202435"
gene 462243..463178
/locus_tag="VC0432"
/db_xref="GeneID:2615693"
CDS 462243..463178
/locus_tag="VC0432"
/EC_number="1.1.1.37"
/note="oxidizes malate to oxaloacetate"
/codon_start=1
/transl_table=11
/product="malate dehydrogenase"
/protein_id="NP_230086.2"
/db_xref="GI:161582025"
/db_xref="GeneID:2615693"
/translation="MKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAA
DLSHIPTPVTIKGYAGEDPTPALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALA
EKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAA
LKDKDPGQVRVPVIGGHSGVTILPLLSQVEGVSFTDEEVAALTKRIQNAGTEVVEAKA
GGGSATLSMGQAACRFGLALVKALQGESDVVEYAYVEGEGEYAPFFAQPIKLGKNGVE
ALLDIGKLSAYEQAALDGMLDTLKGDIQIGVEFVK"
misc_feature 462243..463175
/locus_tag="VC0432"
/note="malate dehydrogenase; Provisional; Region:
PRK05086"
/db_xref="CDD:235340"
misc_feature 462243..463172
/locus_tag="VC0432"
/note="Glyoxysomal and mitochondrial malate
dehydrogenases; Region: MDH_glyoxysomal_mitochondrial;
cd01337"
/db_xref="CDD:133422"
misc_feature order(462267..462278,462342..462344,462468..462470,
462474..462479,462510..462512,462522..462524,
462531..462533,462591..462593,462597..462599,
462678..462680,462687..462689,462771..462773,
462909..462911,462921..462923)
/locus_tag="VC0432"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:133422"
misc_feature order(462282..462284,462372..462377,462381..462389,
462696..462701,462708..462710,462867..462869,
462876..462878,462888..462893,462909..462920,
462927..462929)
/locus_tag="VC0432"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:133422"
misc_feature order(462483..462485,462501..462503,462597..462599,
462699..462701,462771..462773,462870..462872)
/locus_tag="VC0432"
/note="Substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133422"
gene 463652..465058
/locus_tag="VC0433"
/db_xref="GeneID:2615694"
CDS 463652..465058
/locus_tag="VC0433"
/note="similar to GB:U00096 PID:1742644 PID:1742655
PID:1787890; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="arginine/ornithine antiporter"
/protein_id="NP_230087.1"
/db_xref="GI:15640460"
/db_xref="GeneID:2615694"
/translation="MDKKLGLGSLTALVIGSMIGAGVFSLPQNMAAVASPLAVMIGWS
ITGIGMIFLALSFQYLAVNKPHVNSGVFGFAREGFGDFAGFCSAWGYWFSAMVANVSY
LVIVFSTLGLLFDTPDQIIFGSGNTWWSIGGASLLLWAVHSLVLRGVQTAALINLITT
MTKMVPLLLFIVSAIAAFNWSTFSLDFAGLHHISGADLLGQVKATMLITVWVFVGIEG
AVVVSSRARQRKDIGRATILGLLTALSIYVLVTLLSMGVIQVNQLAQYPNPSMAQVLT
TIIGPWGKYIIAVGLLISVCGAFLSWTVLASEAPFLAAKDKMFPRHFAKQNQAGSPVN
ALFLTTLCIQVSLILVRYTSSTYDSLLIFASEMILVPYFLVGAFTLKLALEQRDRGKL
LLIGFGATAYGLWLLYASGLHYLMLSTLLYVPGFAFYLKAKREQGVKAFCGREMVGAS
TLLLFAVGAAGMLWQGAW"
misc_feature 463658..465052
/locus_tag="VC0433"
/note="arginine-ornithine antiporter; Region:
arg_ornith_anti; TIGR03810"
/db_xref="CDD:163522"
misc_feature 463679..>464476
/locus_tag="VC0433"
/note="Spore germination protein; Region: Spore_permease;
cl17796"
/db_xref="CDD:248350"
gene complement(465207..466178)
/locus_tag="VC0434"
/db_xref="GeneID:2615695"
CDS complement(465207..466178)
/locus_tag="VC0434"
/note="similar to SP:P19641 GB:X68873 PID:388220
PID:606125 GB:U00096; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="octaprenyl-diphosphate synthase"
/protein_id="NP_230088.2"
/db_xref="GI:471237037"
/db_xref="GeneID:2615695"
/translation="MDFKAIQALTANDMAKVNETIHAQLNSDVSLINQLGFYIISGGG
KRLRPLLAVLSAKALGYQGSHHTTAAAFIEFIHTATLLHDDVVDESDLRRGKATANAA
FGNAASVLVGDFIYTRSFQMMTELGSMKILKLMSDAVNVIAEGEVQQLMNCNDPDTTE
ASYMQVIYSKTARLFEAATQIGAILCDASPEVELAMQNYGKYLGTAFQLIDDVMDYTS
DGDEMGKNVGDDLAEGKPTLPLLYAMQHGNPEQAAMIREAIEKANGMSRLNEILAAME
QTGSLQYTIEKALHEADKAIAELAILPESEYKQALITLAHMAVNRSK"
misc_feature complement(465210..466169)
/locus_tag="VC0434"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:223220"
misc_feature complement(465216..466100)
/locus_tag="VC0434"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(465474..465476,465489..465491,
465504..465506,465534..465536,465543..465548,
465657..465659,465666..465671,465732..465734,
465741..465743,465897..465902,465915..465920,
465924..465932,465936..465944,465951..465953))
/locus_tag="VC0434"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(465915..465944)
/locus_tag="VC0434"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(465474..465476,465489..465491,
465504..465506,465534..465536,465543..465548,
465669..465671,465732..465734,465897..465902,
465915..465917,465924..465929))
/locus_tag="VC0434"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(465543..465548,465669..465671,
465897..465902,465915..465917,465924..465929))
/locus_tag="VC0434"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(465669..465671,465732..465734,
465897..465902,465915..465917,465924..465929))
/locus_tag="VC0434"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(465468..465482,465489..465506,
465522..465527,465867..465911))
/locus_tag="VC0434"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(465474..465476,465489..465491,
465504..465506,465534..465536,465543..465548))
/locus_tag="VC0434"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene 466449..466760
/gene="rplU"
/locus_tag="VC0435"
/db_xref="GeneID:2615696"
CDS 466449..466760
/gene="rplU"
/locus_tag="VC0435"
/note="similar to GB:L42023 SP:P44359 PID:1005961
PID:1220983 PID:1205127; identified by sequence
similarity"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L21"
/protein_id="NP_230089.1"
/db_xref="GI:15640462"
/db_xref="GeneID:2615696"
/translation="MYAVFQSGGKQHRVSEGQTLRLEKLDVETGATVEFDKVLLVANG
EDIKVGAPLVEGGKVVAEVVQHGRGDKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIN
A"
misc_feature 466449..>466757
/gene="rplU"
/locus_tag="VC0435"
/note="50S ribosomal protein L21/unknown domain fusion
protein; Provisional; Region: PRK12278"
/db_xref="CDD:237034"
misc_feature 466449..466757
/gene="rplU"
/locus_tag="VC0435"
/note="50S ribosomal protein L21; Validated; Region: rplU;
PRK05573"
/db_xref="CDD:235510"
gene 466781..467041
/gene="rpmA"
/locus_tag="VC0436"
/db_xref="GeneID:2615697"
CDS 466781..467041
/gene="rpmA"
/locus_tag="VC0436"
/note="involved in the peptidyltransferase reaction during
translation"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L27"
/protein_id="NP_230090.1"
/db_xref="GI:15640463"
/db_xref="GeneID:2615697"
/translation="MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTK
FHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE"
misc_feature 466781..467029
/gene="rpmA"
/locus_tag="VC0436"
/note="50S ribosomal protein L27; Validated; Region: rpmA;
PRK05435"
/db_xref="CDD:235464"
gene 467264..468436
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/db_xref="GeneID:2615698"
CDS 467264..468436
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="essential GTPase; exhibits high exchange rate for
GTP/GDP; associates with 50S ribosomal subunit; involved
in regulation of chromosomal replication"
/codon_start=1
/transl_table=11
/product="GTPase ObgE"
/protein_id="NP_230091.2"
/db_xref="GI:161582024"
/db_xref="GeneID:2615698"
/translation="MKFVDEAVIKVQAGDGGNGVVSFWREKFVTNGGPDGGDGGDGGD
VYMVADENLNTLIDYRFQRFYEAERGKNGGGGNCTGKSGKDKELRVPVGTRAVDIHTN
EIIGEVAEHGKKVMIAKGGWHGLGNARFKSSVNRSPRQKTLGTKGELRDIRLELLLLA
DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVSVLPEKSFVVADIPGLI
EGAAEGAGLGIRFLKHLERCRVLLHMIDIMPADQSDPAHNALTIIDELEQYSEKLAKK
PRWLVFNKVDLMSEEEADEIIQNIIDALAWEGDYFKISAANRQGTKELCMKLAEFMDT
LPREAEEKTEAEKVDFTWDYNHKDGLAGREVITEDDDDWDDWDDEEDDGHVIYVRD"
misc_feature 467264..468430
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="GTPase CgtA; Reviewed; Region: obgE; PRK12298"
/db_xref="CDD:237047"
misc_feature 467270..467704
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="GTP1/OBG; Region: GTP1_OBG; pfam01018"
/db_xref="CDD:110047"
misc_feature 467741..468256
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="Obg GTPase; Region: Obg; cd01898"
/db_xref="CDD:206685"
misc_feature 467759..467782
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="G1 box; other site"
/db_xref="CDD:206685"
misc_feature order(467768..467785,468110..468115,468119..468121,
468203..468208)
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206685"
misc_feature 467804..467851
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="Switch I region; other site"
/db_xref="CDD:206685"
misc_feature 467840..467842
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="G2 box; other site"
/db_xref="CDD:206685"
misc_feature 467900..467911
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="G3 box; other site"
/db_xref="CDD:206685"
misc_feature order(467909..467932,467939..467977)
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="Switch II region; other site"
/db_xref="CDD:206685"
misc_feature 468110..468121
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="G4 box; other site"
/db_xref="CDD:206685"
misc_feature 468203..468211
/gene="obgE"
/locus_tag="VC0437"
/gene_synonym="cgtA; obg; yhbZ"
/note="G5 box; other site"
/db_xref="CDD:206685"
gene 468450..469319
/locus_tag="VC0438"
/db_xref="GeneID:2615699"
CDS 468450..469319
/locus_tag="VC0438"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230092.1"
/db_xref="GI:15640465"
/db_xref="GeneID:2615699"
/translation="MPQLSCGFFVSKSTFLKFVSGTLTLSSAYLGFRKGIMESKQRAV
SRLIAQAGQMLLAHGAESTLVGDIMRRMGLASGMSEVEVSLSASSLVVTTVYKEHCIT
TARRSPDRGINMRVVTQIQRICIMMEKGILDHSLAQRKLNHISPERYNRWLVVVMIGL
SCAAFSRLAGGDWMVFLITLIASSVGMIVRQEIGHRQFNPLINFAATAFVTSVISAQA
VIYQLGNKPTIVMASSVLMLVPGFPLINAVADMLKGYINMGIARFVMASLLTLATALG
IVAAMSITGIWGW"
misc_feature 468540..469277
/locus_tag="VC0438"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2966"
/db_xref="CDD:32786"
misc_feature 468600..469172
/locus_tag="VC0438"
/note="Protein of unknown function (DUF1212); Region:
DUF1212; pfam06738"
/db_xref="CDD:203509"
gene 469307..469792
/locus_tag="VC0439"
/db_xref="GeneID:2615700"
CDS 469307..469792
/locus_tag="VC0439"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_230093.1"
/db_xref="GI:15640466"
/db_xref="GeneID:2615700"
/translation="MGVVMLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCAL
GGALGHGSRYLMMHFGVPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVP
GVFAFKAMIALVEINHVGFSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPI
I"
misc_feature 469319..469783
/locus_tag="VC0439"
/note="Protein of unknown function (DUF1212); Region:
DUF1212; cl01118"
/db_xref="CDD:207314"
gene 469805..470302
/locus_tag="VC0440"
/db_xref="GeneID:2615701"
CDS 469805..470302
/locus_tag="VC0440"
/note="similar to SP:P12833 PID:150520; identified by
sequence similarity"
/codon_start=1
/transl_table=11
/product="dihydrofolate reductase"
/protein_id="NP_230094.1"
/db_xref="GI:15640467"
/db_xref="GeneID:2615701"
/translation="MMISMIAAMADQRIIGKDNQMPWHLPADFAWFKRCTLGKPVVMG
RKTYQSIGRPLPGRHNIVISRDASLQIEGVDVVTSIEAALAKAGEVDEVMIIGGGSLY
AACLPMAHKLYITEIHAKLDGDTQFPEWGSDWLERSREHYPADEKNAYGMDFVIFERQ
YPLPT"
misc_feature 469808..470281
/locus_tag="VC0440"
/note="Dihydrofolate reductase [Coenzyme metabolism];
Region: FolA; COG0262"
/db_xref="CDD:223340"
misc_feature 469811..470278
/locus_tag="VC0440"
/note="Dihydrofolate reductase (DHFR). Reduces
7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
as a cofactor. This is an essential step in the
biosynthesis of deoxythymidine phosphate since
5,6,7,8-tetrahydrofolate is required to regenerate 5;
Region: DHFR; cd00209"
/db_xref="CDD:238127"
misc_feature order(469820..469822,469871..469873,469886..469888,
469976..469978,470090..470092,470108..470110,
470147..470149)
/locus_tag="VC0440"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:238127"
misc_feature order(469826..469828,469847..469849,469937..469945,
469997..469999,470093..470104)
/locus_tag="VC0440"
/note="NADP+ binding site [chemical binding]; other site"
/db_xref="CDD:238127"
gene complement(470451..471260)
/gene="apaH"
/locus_tag="VC0441"
/db_xref="GeneID:2615702"
CDS complement(470451..471260)
/gene="apaH"
/locus_tag="VC0441"
/EC_number="3.6.1.41"
/note="'hydrolyzes P(1),P(4)-bis(5'-adenosyl)
tetraphosphate to form 2 ADP'"
/codon_start=1
/transl_table=11
/product="diadenosine tetraphosphatase"
/protein_id="NP_230095.1"
/db_xref="GI:15640468"
/db_xref="GeneID:2615702"
/translation="MANYIVGDIQGCFDELQQLLKQAEFNSQLDTLWFAGDLVARGPK
SLETLRFVYQLGDAARVVLGNHDLHLLSVALGHHSAKRRDQTQAVLDAPDAAPLLDWL
RQQPLLAEHQEFVLCHAGISPQWDLATARQAAQEVESVLRSPEWSTLIEQMYSDQPDA
WHPTLQGIDRLRYIVNAFTRMRFCFPDGRLDMQCKLPPKEVTDGSLLPWFQLPQRIAL
EKTVIFGHWAALEGYVSETVIGLDTGCVWGGTLTMLRWEDKHYFSQAALPA"
misc_feature complement(470454..471260)
/gene="apaH"
/locus_tag="VC0441"
/note="diadenosine tetraphosphatase; Reviewed; Region:
apaH; PRK00166"
/db_xref="CDD:234673"
misc_feature complement(470490..471254)
/gene="apaH"
/locus_tag="VC0441"
/note="Escherichia coli ApaH and related proteins,
metallophosphatase domain; Region: MPP_ApaH; cd07422"
/db_xref="CDD:163665"
misc_feature complement(order(470520..470522,470535..470537,
470583..470585,470907..470909,471063..471068,
471138..471143,471150..471152,471231..471233,
471237..471239))
/gene="apaH"
/locus_tag="VC0441"
/note="active site"
/db_xref="CDD:163665"
misc_feature complement(order(470583..470585,470907..470909,
471066..471068,471150..471152,471231..471233,
471237..471239))
/gene="apaH"
/locus_tag="VC0441"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163665"
gene complement(471271..471651)
/gene="apaG"
/locus_tag="VC0442"
/db_xref="GeneID:2615774"
CDS complement(471271..471651)
/gene="apaG"
/locus_tag="VC0442"
/note="protein associated with Co2+ and Mg2+ efflux"
/codon_start=1
/transl_table=11
/product="ApaG protein"
/protein_id="NP_230096.1"
/db_xref="GI:15640469"
/db_xref="GeneID:2615774"
/translation="MDVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTV
QLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLM
IDEQGESFTVEIEPFRLAVPHVLN"
misc_feature complement(471274..471651)
/gene="apaG"
/locus_tag="VC0442"
/note="CO2+/MG2+ efflux protein ApaG; Reviewed; Region:
apaG; PRK05461"
/db_xref="CDD:180098"
gene complement(471723..472571)
/gene="ksgA"
/locus_tag="VC0443"
/db_xref="GeneID:2615775"
CDS complement(471723..472571)
/gene="ksgA"
/locus_tag="VC0443"
/note="catalyzes the transfer of a total of four methyl
groups from S-adenosyl-l-methionine (S-AdoMet) to two
adjacent adenosine bases A1518 and A1519 in 16S rRNA;
mutations in ksgA causes resistance to the translation
initiation inhibitor kasugamycin"
/codon_start=1
/transl_table=11
/product="dimethyladenosine transferase"
/protein_id="NP_230097.1"
/db_xref="GI:15640470"
/db_xref="GeneID:2615775"
/translation="MIKKRNNLEKTMRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAI
NPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELASKLTIHEGD
AMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAA
GPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLE
WLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWLDA
THKTHA"
misc_feature complement(471738..472553)
/gene="ksgA"
/locus_tag="VC0443"
/note="16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed; Region: ksgA; PRK00274"
/db_xref="CDD:178953"
gene complement(472552..473544)
/gene="pdxA"
/locus_tag="VC0444"
/db_xref="GeneID:2615776"
CDS complement(472552..473544)
/gene="pdxA"
/locus_tag="VC0444"
/EC_number="1.1.1.262"
/note="catalyzes oxidation of
4-(phosphohydroxy)-L-threonine into
2-amino-3-oxo-4-(phosphohydroxy)butyric acid which
decarboxylates to form
1-amino-3-(phosphohydroxy)propan-2-one
(3-amino-2-oxopropyl phosphate)"
/codon_start=1
/transl_table=11
/product="4-hydroxythreonine-4-phosphate dehydrogenase"
/protein_id="NP_230098.1"
/db_xref="GI:15640471"
/db_xref="GeneID:2615776"
/translation="MSSKRIIVTAGEPAGIGPDLVLALSAQDWPHQLVVCADKALLAQ
RATQLGIQVKLLDYQRDNPVQAQQAGTLLVEHIPLAEPVVAGQLNPANGHYVLKTLER
AAKGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSKTPLVVMMLATEGLRTA
LVTTHLPLAEVPQAITCERLEQIVHILHKDLVEKFAIAEPKIYVCGLNPHAGEDGVLG
MDEIETITPTLQRLREQYGMQLVGPLPADTIFSEKYLQQADAVLGMYHDQVLPVLKYK
GFGRSVNITLGLPFIRTSVDHGTALDLAGTGQADAGSFWTALAYAIELVDKKAQ"
misc_feature complement(472555..473544)
/gene="pdxA"
/locus_tag="VC0444"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Reviewed; Region: pdxA; PRK00232"
/db_xref="CDD:234696"
misc_feature complement(472606..473544)
/gene="pdxA"
/locus_tag="VC0444"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Validated; Region: pdxA; PRK03743"
/db_xref="CDD:179641"
gene complement(473534..474829)
/locus_tag="VC0445"
/db_xref="GeneID:2615777"
CDS complement(473534..474829)
/locus_tag="VC0445"
/note="similar to SP:P21202 GB:M68521 PID:147119
PID:216478 GB:U00096; identified by sequence similarity"
/codon_start=1
/transl_table=11
/product="survival protein SurA"
/protein_id="NP_230099.1"
/db_xref="GI:15640472"
/db_xref="GeneID:2615777"
/translation="MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDV
DSALKTIKANAKQNKQPLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAI
KEIAKNNQQTQEQLIASVAQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVD
TLAELLAQETDATVQYKISHIQLRVDDGQDKSTAETLANKLVNDLRNGADFAQMAYAY
