LOCUS NC_002976 2616530 bp DNA circular BCT 21-DEC-2012
DEFINITION Staphylococcus epidermidis RP62A, complete genome.
ACCESSION NC_002976
VERSION NC_002976.3 GI:57865352
DBLINK Project: 57663
BioProject: PRJNA57663
KEYWORDS .
SOURCE Staphylococcus epidermidis RP62A
ORGANISM Staphylococcus epidermidis RP62A
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.
REFERENCE 1 (bases 1 to 2616530)
AUTHORS Gill,S.R., Fouts,D.E., Archer,G.L., Mongodin,E.F., Deboy,R.T.,
Ravel,J., Paulsen,I.T., Kolonay,J.F., Brinkac,L., Beanan,M.,
Dodson,R.J., Daugherty,S.C., Madupu,R., Angiuoli,S.V., Durkin,A.S.,
Haft,D.H., Vamathevan,J., Khouri,H., Utterback,T., Lee,C.,
Dimitrov,G., Jiang,L., Qin,H., Weidman,J., Tran,K., Kang,K.,
Hance,I.R., Nelson,K.E. and Fraser,C.M.
TITLE Insights on evolution of virulence and resistance from the complete
genome analysis of an early methicillin-resistant Staphylococcus
aureus strain and a biofilm-producing methicillin-resistant
Staphylococcus epidermidis strain
JOURNAL J. Bacteriol. 187 (7), 2426-2438 (2005)
PUBMED 15774886
REFERENCE 2 (bases 1 to 2616530)
AUTHORS Gill,S.R.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2004) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
REFERENCE 3 (bases 1 to 2616530)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000029.
On Jan 18, 2005 this sequence version replaced gi:38154464.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2616530
/organism="Staphylococcus epidermidis RP62A"
/mol_type="genomic DNA"
/strain="RP62A"
/db_xref="taxon:176279"
gene 540..677
/gene="rpmH"
/locus_tag="SERP0001"
/db_xref="GeneID:3240514"
CDS 540..677
/gene="rpmH"
/locus_tag="SERP0001"
/note="in Escherichia coli transcription of this gene is
enhanced by polyamines"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L34"
/protein_id="YP_187601.1"
/db_xref="GI:57865940"
/db_xref="GeneID:3240514"
/translation="MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLS
A"
misc_feature 546..>620
/gene="rpmH"
/locus_tag="SERP0001"
/note="50S ribosomal protein L34; Reviewed; Region: rpmH;
PRK00399"
/db_xref="CDD:179004"
gene 836..1183
/gene="rnpA"
/locus_tag="SERP0002"
/db_xref="GeneID:3240515"
CDS 836..1183
/gene="rnpA"
/locus_tag="SERP0002"
/EC_number="3.1.26.5"
/note="protein component of RNaseP which catalyzes the
removal of the 5'-leader sequence from pre-tRNA to produce
the mature 5'terminus; this enzyme also cleaves other RNA
substrates"
/codon_start=1
/transl_table=11
/product="ribonuclease P"
/protein_id="YP_187602.1"
/db_xref="GI:57865941"
/db_xref="GeneID:3240515"
/translation="MEKAYRIKRNSDFQAIYKNGKSVANRQFVVYTYKNRDLKHFRLG
ISVSKKLGNAVTRNRIKRAIRENFKVHKQNIIAKDIIVIARQPAKDMNTLEIQSSLEH
VLKIAKVFNKKIK"
misc_feature 842..1180
/gene="rnpA"
/locus_tag="SERP0002"
/note="ribonuclease P; Reviewed; Region: rnpA; PRK00499"
/db_xref="CDD:234782"
gene 1329..2708
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/db_xref="GeneID:3240516"
CDS 1329..2708
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="in Escherichia coli this protein is involved in the
biosynthesis of the hypermodified nucleoside
5-methylaminomethyl-2-thiouridine, which is found in the
wobble position of some tRNAs and affects ribosomal
frameshifting; shows potassium-dependent dimerization and
GTP hydrolysis; also involved in regulation of
glutamate-dependent acid resistance and activation of
gadE"
/codon_start=1
/transl_table=11
/product="tRNA modification GTPase TrmE"
/protein_id="YP_187603.1"
/db_xref="GI:57865942"
/db_xref="GeneID:3240516"
/translation="MDFDTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSE
VETHTINYGHIIDPETNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELT
MTYGARMAEPGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLI
KKQRQSILEILAQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIM
REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDT
AGIRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVII
NKTDLEQRLDVSELREMIGDMPLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYV
SNSRHISLLKQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQ
LFSQFCLGK"
misc_feature 1329..2705
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="tRNA modification GTPase TrmE; Reviewed; Region:
trmE; PRK05291"
/db_xref="CDD:235392"
misc_feature 1341..1700
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="GTP-binding protein TrmE N-terminus; Region:
TrmE_N; pfam10396"
/db_xref="CDD:204472"
misc_feature 1983..2465
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="trmE is a tRNA modification GTPase; Region: trmE;
cd04164"
/db_xref="CDD:206727"
misc_feature 2010..2033
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="G1 box; other site"
/db_xref="CDD:206727"
misc_feature order(2019..2021,2025..2036,2331..2336,2340..2342,
2409..2417)
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206727"
misc_feature 2055..2105
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="Switch I region; other site"
/db_xref="CDD:206727"
misc_feature 2094..2096
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="G2 box; other site"
/db_xref="CDD:206727"
misc_feature order(2148..2180,2184..2228)
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="Switch II region; other site"
/db_xref="CDD:206727"
misc_feature 2151..2162
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="G3 box; other site"
/db_xref="CDD:206727"
misc_feature 2331..2342
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="G4 box; other site"
/db_xref="CDD:206727"
misc_feature 2409..2417
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="G5 box; other site"
/db_xref="CDD:206727"
misc_feature 2478..2696
/gene="trmE"
/locus_tag="SERP0003"
/gene_synonym="mnmE; thdF"
/note="Catalytic cysteine-containing C-terminus of GTPase,
MnmE; Region: GTPase_Cys_C; pfam12631"
/db_xref="CDD:204989"
gene 2781..4658
/gene="gidA"
/locus_tag="SERP0004"
/db_xref="GeneID:3240517"
CDS 2781..4658
/gene="gidA"
/locus_tag="SERP0004"
/note="GidA; glucose-inhibited cell division protein A;
involved in the 5-carboxymethylaminomethyl modification
(mnm(5)s(2)U) of the wobble uridine base in some tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA"
/protein_id="YP_187604.1"
/db_xref="GI:57865943"
/db_xref="GeneID:3240517"
/translation="MVQEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMP
CNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLY
QQEMKRVLENEDNLDIMQGMVDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGE
IILGNLKYSSGPNHQLPSVTLADNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPG
DDIGRAFSFETTEFILDQLPCWLTYTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPS
IEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMM
RAGYAIEYDAIVPTQLWPTLETKAIKNLYTAGQINGTSGYEEAAGQGIMAGINAAGNV
LGTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGY
ELGLISEERYARFNEKRQQIKDEIQRLTDVRIKPNEHTQAIIEAKGGSRLKDGILAID
LLRRPEMNYETILEILEESHQLPEAVEEQVEIQTKYEGYINKSLQQVEKVKRMEAKKI
PEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISGVNPADISILLVYLEQGKLQRVK
Q"
misc_feature 2781..4652
/gene="gidA"
/locus_tag="SERP0004"
/note="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated; Region: PRK05192"
/db_xref="CDD:179960"
misc_feature 2799..4043
/gene="gidA"
/locus_tag="SERP0004"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:214164"
misc_feature 4407..4619
/gene="gidA"
/locus_tag="SERP0004"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene 4658..5377
/gene="gidB"
/locus_tag="SERP0005"
/db_xref="GeneID:3240518"
CDS 4658..5377
/gene="gidB"
/locus_tag="SERP0005"
/note="glucose-inhibited division protein B; SAM-dependent
methyltransferase; methylates the N7 position of guanosine
in position 527 of 16S rRNA"
/codon_start=1
/transl_table=11
/product="16S rRNA methyltransferase GidB"
/protein_id="YP_187605.1"
/db_xref="GI:57865944"
/db_xref="GeneID:3240518"
/translation="MSIEWLSEKLSEQGIELSNTQKEQFQKYYKLLVEWNKKMNLTSI
TDEHDVYLKHFYDSIAPSFYYDFNGQLSLCDIGAGAGFPSIPLKIVYPELKVTIVDSL
NKRIQFLNHLAAELGLEDVSFVHDRAEIYGKGVYRESYDIVTARAVARLTVLSELCLP
LVKKGGQFLALKSSKGEEELQEATFAINILGGNVKETHTFELPENAGERQMIIIDKRR
QTSKKYPRKPGTPNKSPLVES"
misc_feature 4673..5314
/gene="gidB"
/locus_tag="SERP0005"
/note="Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane]; Region: GidB;
COG0357"
/db_xref="CDD:223434"
misc_feature 4880..5164
/gene="gidB"
/locus_tag="SERP0005"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(4883..4903,4955..4960,5033..5041,5093..5095)
/gene="gidB"
/locus_tag="SERP0005"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 5421..6260
/locus_tag="SERP0006"
/db_xref="GeneID:3240519"
CDS 5421..6260
/locus_tag="SERP0006"
/note="identified by similarity to OMNI:SA2735; match to
protein family HMM PF02195; match to protein family HMM
TIGR00180"
/codon_start=1
/transl_table=11
/product="ParB family chromosome partioning protein"
/protein_id="YP_187606.1"
/db_xref="GI:57865945"
/db_xref="GeneID:3240519"
/translation="MKKPFSKLFGLKNKDDIIGYTEEERNNNVESIHIERIVPNRYQP
RQVFEPNKIKELAESIEEHGLLQPIVVRPIEEDMFEIIAGERRFRALQSLHKPQVDVI
VRDMDDEETAVVALIENIQRENLSVVEEAEAYKKLLEIGGTTQNELAKSLGKSQSFIA
NKLRLLKLAPNVIKRLREGKITERHARAVLVLPDETQEELIEQVISQKLNVKQTEDRV
RQKTGPEKVKAQTFQFSQDVTQAKEELGKSIETIEKSGIRVEQKDKEHEDYYEIKIKI
YKK"
misc_feature 5502..6206
/locus_tag="SERP0006"
/note="nucleoid occlusion protein; Region: nucleoid_noc;
TIGR04285"
/db_xref="CDD:234533"
misc_feature 5508..5780
/locus_tag="SERP0006"
/note="ParB-like nuclease domain; Region: ParBc;
pfam02195"
/db_xref="CDD:216926"
gene complement(6313..6459)
/locus_tag="SERP0007"
/db_xref="GeneID:3240510"
CDS complement(6313..6459)
/locus_tag="SERP0007"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187607.1"
/db_xref="GI:57865954"
/db_xref="GeneID:3240510"
/translation="MSDAIQVFFAMVKMLLGTFNMIINVDICYLDILLHRIFYRYTIK
DNAL"
gene 6522..6683
/locus_tag="SERP0008"
/db_xref="GeneID:3240511"
CDS 6522..6683
/locus_tag="SERP0008"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187608.1"
/db_xref="GI:57865955"
/db_xref="GeneID:3240511"
/translation="MFYVKQKLSLFRKLGDLNNIFTTIDLRYKLKVNDTFRLINMDEK
GYCVWYINF"
gene 6661..7020
/locus_tag="SERP0009"
/db_xref="GeneID:3240512"
CDS 6661..7020
/locus_tag="SERP0009"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187609.1"
/db_xref="GI:57865956"
/db_xref="GeneID:3240512"
/translation="MFGISISSAILHFVIGGFAVALASIMADKVGGKLGGIIATMPAV
YLAAIIALAIDHKGQQLIQMSIHLSTGAIVGIVSCIVTVFFTSIFIGKKNYRSGTVFA
ILCWFVISVAIFLVRHI"
misc_feature 6685..7017
/locus_tag="SERP0009"
/note="Protein of unknown function (DUF3147); Region:
DUF3147; pfam11345"
/db_xref="CDD:151786"
gene 7036..7431
/locus_tag="SERP0010"
/db_xref="GeneID:3240860"
CDS 7036..7431
/locus_tag="SERP0010"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187610.1"
/db_xref="GI:57865957"
/db_xref="GeneID:3240860"
/translation="MKLAIIKFSVGGLAVLISYIVSVVLPWKEFGGIFATFPAVFLVS
MCITGMQFGNEVAMHVSRGAVFGMIGVLCSILATWGLLQATHMWLLSIIGGFVAWFVS
ALIIFEIVEFIAHKRRDKHGWKTKRSNNQ"
misc_feature 7045..7371
/locus_tag="SERP0010"
/note="Protein of unknown function (DUF3147); Region:
DUF3147; pfam11345"
/db_xref="CDD:151786"
gene 7397..7936
/locus_tag="SERP0011"
/db_xref="GeneID:3240861"
CDS 7397..7936
/locus_tag="SERP0011"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_187611.1"
/db_xref="GI:57865958"
/db_xref="GeneID:3240861"
/translation="MAGRPKDPTINKKIYTEIQRLLETTHFRDITIDQISENTGISKA
TIYRRWKDKSSIIMSAFIEQSQYIVIHNQDNLYDDLFQFLVKIKDIYKTKLGSAVIEI
LISHQQMEARETFMTNYFNHNRKVLKEIVRKHIQEEEQDLFIDLIFSPIYFNILIKPE
TLDKNYIKKMLNQVLRIYH"
misc_feature 7430..7867
/locus_tag="SERP0011"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:224228"
misc_feature 7454..7576
/locus_tag="SERP0011"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 8156..8725
/locus_tag="SERP0012"
/db_xref="GeneID:3240862"
CDS 8156..8725
/locus_tag="SERP0012"
/note="identified by match to protein family HMM PF01381"
/codon_start=1
/transl_table=11
/product="Cro/CI family transcriptional regulator"
/protein_id="YP_187612.1"
/db_xref="GI:57865959"
/db_xref="GeneID:3240862"
/translation="MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDI
HNLLIMCQLFKVSLDELVEDDLKNVQIKNIKKELDFWTWMMIITMVLGSVLIGPMIHY
FHWLGIGITYLVFLIGIIASTKLEKIKIKNDIETYDRILAFINGKDPKEVQKSKFRDI
WTSSISFIFFVGVIIGISYLSIILTDYFL"
misc_feature 8162..>8359
/locus_tag="SERP0012"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:224314"
misc_feature 8165..8338
/locus_tag="SERP0012"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature order(8177..8179,8189..8191,8264..8266)
/locus_tag="SERP0012"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(8186..8188,8261..8263)
/locus_tag="SERP0012"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature order(8207..8212,8243..8245,8252..8254,8264..8269)
/locus_tag="SERP0012"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene complement(8913..9542)
/locus_tag="SERP0013"
/db_xref="GeneID:3240863"
CDS complement(8913..9542)
/locus_tag="SERP0013"
/note="identified by similarity to OMNI:NTL01SA0199"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187613.1"
/db_xref="GI:57865960"
/db_xref="GeneID:3240863"
/translation="MSTQELKENDIQNSSIPFVNHFNKLRHQPKWILKSIIVIVLAII
SAFITYNTSNELLDNQSIANNQMDENMLRMSTTIGAFIGTIFSVVVVFLIFLIISKIF
KSDAKASSLFSAALSYSIIILGFTTIISLIQIVFGLKITDYKLDSLNIFSKDNKTLMA
FSLTNLLKAFLTGVVYYSTSRLSKKASVILGIVALIILIGSGMISGMNS"
gene 9780..10898
/locus_tag="SERP0014"
/db_xref="GeneID:3240864"
CDS 9780..10898
/locus_tag="SERP0014"
/note="identified by similarity to GP:14245964"
/codon_start=1
/transl_table=11
/product="RND efflux transporter"
/protein_id="YP_187614.1"
/db_xref="GI:57865961"
/db_xref="GeneID:3240864"
/translation="MNKKLLWSIIGIVIIVVLIIAAFILKQVNGSGSKDSNAYDTYTV
RKETPISLEGKASPESVKTYNNNQSVGNFLSVSVQDGQTVKQGERIINYDTNGNKRQQ
LLNKVNQAQSQVNDDYQKVNQSPNNHQLQVKLTQDQSALNEAQQSLSQYDRQLNDSMN
ASFDGKINIKNDSDVGEGQPILQLISSNPQINATITEFDINKIKEGDEVNVTVNSTGK
KGKGKILKIDELPTSYDTSDDSTASSAQAGAQGDSEEGTEMTTSNPTINQPTGGKSGE
TSKYKVIIGDLDIPVRSGFSMDAKIPLKTKKLPNNVLTKDNNVFVVDKNNKVHKREIK
IERNNGEIIVKKGLKSGDKVLKSPKGNLNDGEKVEVSS"
misc_feature 9990..10889
/locus_tag="SERP0014"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:233547"
misc_feature 10260..>10424
/locus_tag="SERP0014"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:222128"
gene 10895..11581
/locus_tag="SERP0015"
/db_xref="GeneID:3242378"
CDS 10895..11581
/locus_tag="SERP0015"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187615.1"
/db_xref="GI:57865968"
/db_xref="GeneID:3242378"
/translation="MIELRKINRHFKNGNESNHILKDIDIHIDEGEFIAIMGPSGSGK
STLINILGFIDRGYEGEYFFNNENYQKSSDNKLAEIRNHTVGFVFQNFKLIQNNTILE
NVSIPLIYNGLSNKARKSKVLDGLHDVGLKGKENLLPNKLSGGQQQRVAIARAIINDP
KFIIADEPTGALDSKTSQDIMELFVKLNKEQNTTIIMVTHDREVAEKADRIIHILDGR
VQEEEVLTRE"
misc_feature 10895..11566
/locus_tag="SERP0015"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:224059"
misc_feature 10898..11551
/locus_tag="SERP0015"
/note="ATP-binding cassette domain of the transporters
involved in export of lipoprotein and macrolide, and cell
division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
/db_xref="CDD:213222"
misc_feature 11006..11029
/locus_tag="SERP0015"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213222"
misc_feature order(11015..11020,11024..11032,11162..11164,11390..11395,
11492..11494)
/locus_tag="SERP0015"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213222"
misc_feature 11153..11164
/locus_tag="SERP0015"
/note="Q-loop/lid; other site"
/db_xref="CDD:213222"
misc_feature 11318..11347
/locus_tag="SERP0015"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213222"
misc_feature 11378..11395
/locus_tag="SERP0015"
/note="Walker B; other site"
/db_xref="CDD:213222"
misc_feature 11402..11413
/locus_tag="SERP0015"
/note="D-loop; other site"
/db_xref="CDD:213222"
misc_feature 11480..11500
/locus_tag="SERP0015"
/note="H-loop/switch region; other site"
/db_xref="CDD:213222"
gene 11574..12770
/locus_tag="SERP0016"
/db_xref="GeneID:3242379"
CDS 11574..12770
/locus_tag="SERP0016"
/note="identified by match to protein family HMM PF02687"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_187616.1"
/db_xref="GI:57865969"
/db_xref="GeneID:3242379"
/translation="MNNFSNVISVAIRSILKNKRRNIFTMIGIIIGIASVITIMSLGN
GFKKSTTEQFNDAGAGKNQASISYMTENMEAPKNNPFKQEDMSVVEQVNGVKSAKVKE
DKDSTYSVKITNTHGSSDASLKKVDKLTDVDEGKGFTNDDNEVLEKVAVIDKKIAKKV
FNNQAMGQSIYINGEGFKVVGVSESSEVDESGMPIESLIQIPSKTFNKYMGNLTQGMP
QLLVTVEKGSDKKDVGKKVEKVLNKKGTGVSEGQYSYEDNEAVMKTIGSVLDTITYFV
AAVAGISLFIAGIGVMNVMYISVTERTEEIAIRRAFGAKGRDIEIQFLVESVVLCLIG
GIIGLILGIIIATLIDLVTPEMVKSSVSLGSVILAVGVSTLIGIIFGWIPARSASKKE
LIDIIK"
misc_feature 11604..>11867
/locus_tag="SERP0016"
/note="MacB-like periplasmic core domain; Region:
MacB_PCD; pfam12704"
/db_xref="CDD:221725"
misc_feature 12405..12752
/locus_tag="SERP0016"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:217187"
gene 12806..12898
/locus_tag="SERP0017"
/db_xref="GeneID:3242380"
CDS 12806..12898
/locus_tag="SERP0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187617.1"
/db_xref="GI:57865970"
/db_xref="GeneID:3242380"
/translation="MVEILVNTAISVYIVALYTQWLSTRDNLKA"
gene 13768..15813
/locus_tag="SERP0018"
/db_xref="GeneID:3242381"
CDS 13768..15813
/locus_tag="SERP0018"
/note="identified by match to protein family HMM PF04650;
match to protein family HMM TIGR01168"
/codon_start=1
/transl_table=11
/product="lipase"
/protein_id="YP_187618.1"
/db_xref="GI:57865971"
/db_xref="GeneID:3242381"
/translation="MTNNNRIKRFSIRKYAVGVVSIITGATIFIGGQQAQAAETSVQH
ADAHPEDSQTTQQLKNDKVEETLKASKQGNADSQQVQTIDQSKTNQNNQHSVAESAQL
KSDETANQPKKEEGSSVKQDVQPSKNVNQQDVATQSNERENNDIKDEGQTSKTSNQHI
QSSNSHNQSTGTKDSYSEEIDQPLVKLQKPSNDSTYQTQSKTKQDSSKQLPQEKTTKR
QIQTTENEQTTKVDSKKANDTQNVEKHTQEPKNDTSTSQKNHQQVATKEQSNRSTTRE
TQKQSANANQNHQSTHQAQFKNQYPVVFVHGFLGFAGDNQFSLAPKYWGGTKYNIDRN
LTNEGYNVHEANIGAFSSNYDRAVELYYYVKGGRVDYGAAHAAKYGHHRYGRTYKGIM
RDWEPGKKIHFIGHSMGGQTIRQMEEFLRNGNQEEIEYQRQHGGTISDLFTGGKDNMV
ASITTLGTPHNGTPAADKIGTRKLVKETINRIGRLSGGKDVDIDLGFSQWGLKQQPNE
SYIDYAERVSKSKIWNTEDQAVNDLTTQGAEKINQQTSLNPNIVYTTYTGSATHTGPL
GNELPNSSEILLLNLTSRIIGKDANKEIRPNDGVVPVISSQHPSNQAFKKVDDHTPAT
DKGVWQVRPVQHDWDHLDLVGMDAFDLTHTGRELGQFYLGIMDNIMRIEEADGITNK"
misc_feature 13777..13878
/locus_tag="SERP0018"
/note="YSIRK type signal peptide; Region: YSIRK_signal;
cl04650"
/db_xref="CDD:214135"
misc_feature 14665..15780
/locus_tag="SERP0018"
/note="Predicted acetyltransferases and hydrolases with
the alpha/beta hydrolase fold [General function prediction
only]; Region: LipA; COG1075"
/db_xref="CDD:31273"
gene complement(15885..16076)
/locus_tag="SERP0019"
/db_xref="GeneID:3242382"
CDS complement(15885..16076)
/locus_tag="SERP0019"
/note="identified by similarity to OMNI:SA2726"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187619.1"
/db_xref="GI:57865972"
/db_xref="GeneID:3242382"
/translation="MKFKELIKQSYEDLKNLTINWFNVLSLTVIIFILSNIVTPLIGI
PVGLLGGAYILKRREEKNK"
gene complement(16121..18001)
/locus_tag="SERP0020"
/db_xref="GeneID:3242383"
CDS complement(16121..18001)
/locus_tag="SERP0020"
/note="identified by similarity to OMNI:NTL01BH0754; match
to protein family HMM PF02687"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_187620.1"
/db_xref="GI:57865973"
/db_xref="GeneID:3242383"
/translation="MTFNQLILKNLRKNIKHYGMFLFSLLISIILYFSFSTLKYSHSI
NNSDSSTIIKNGATIGATILFIIIVVFLMYANHLFIKRRTKEFALYQLIGLTRGNILR
MLNIEQLVFFIVTGILGTLIGIFGSKLLLVIASKLMKLNTHISIGFEPQAILITIVML
AVAFLLIMIQNYIFLKKHSILALMKDNYTPEATQKRITTFEAIGGILGIIMIVFGYYM
STEMFGVFKALTTALITPFSILFLTIVGAFLFFRSSVSLIFKTLKHIKHGRVNITDVV
FTSSIMHRMKKNAMSLTVIAIISAFTVSILCFAAITQSNTNTTLEMTSPDDFNISQNK
IAAQFKHKLDQGNLKYHQRTYEVINPKTLSDHVMKSKNGSDMSTNTTSLMMNSHLKGH
EAKITNIQSSTGLIDIHLNHKITVKGKSKQSIIVKDKDNSKIYPSQLSFGAPIVEVSP
EVYNTLKTDNIVNKMYGFNFNTHKDVKKAEKIASKVNRNIVSHDEYKKFINQSNGILI
FVTSFLGIAFLMAAGCIIYIKQMDETEDELDNFKILRRIGFTYTDMSKGLLLKIAFNF
GLPLLIALLHALFAALAFMKLLGNVSMSPIFIVMIIYTIVYFIFAMISFIHSSRMIKH
SI"
misc_feature complement(17462..17827)
/locus_tag="SERP0020"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:202350"
gene complement(17991..18749)
/locus_tag="SERP0021"
/db_xref="GeneID:3242384"
CDS complement(17991..18749)
/locus_tag="SERP0021"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187621.1"
/db_xref="GI:57865974"
/db_xref="GeneID:3242384"
/translation="MAILTANQLSKVYGHKQKYRALNNISFSVEKGEFVAVMGPSGSG
KTTLLNVLSSIDTISGGTVEVEGKEINKLSHKEVANFRKQHLGFIFQDYSVLPTLTVK
ENIMLPLSVQKFHKYEMEQNYKEVAEALGIYNLGNKYPSEISGGQQQRTAAARAFVHK
PTIIFADEPTGALDSKSAQDLLHRLEDMNKQFNSTIMMVTHDPSAASYAERVIMLKDG
DIHSEIYQGNDSKQTFYQEIMKLQTALGGVSHDI"
misc_feature complement(18078..18743)
/locus_tag="SERP0021"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:224059"
misc_feature complement(18090..18740)
/locus_tag="SERP0021"
/note="ATP-binding cassette domain of the transporters
involved in export of lipoprotein and macrolide, and cell
division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
/db_xref="CDD:213222"
misc_feature complement(18612..18635)
/locus_tag="SERP0021"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213222"
misc_feature complement(order(18147..18149,18246..18251,18477..18479,
18609..18617,18621..18626))
/locus_tag="SERP0021"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213222"
misc_feature complement(18477..18488)
/locus_tag="SERP0021"
/note="Q-loop/lid; other site"
/db_xref="CDD:213222"
misc_feature complement(18294..18323)
/locus_tag="SERP0021"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213222"
misc_feature complement(18246..18263)
/locus_tag="SERP0021"
/note="Walker B; other site"
/db_xref="CDD:213222"
misc_feature complement(18228..18239)
/locus_tag="SERP0021"
/note="D-loop; other site"
/db_xref="CDD:213222"
misc_feature complement(18141..18161)
/locus_tag="SERP0021"
/note="H-loop/switch region; other site"
/db_xref="CDD:213222"
gene 19043..19423
/locus_tag="SERP0022"
/db_xref="GeneID:3242385"
CDS 19043..19423
/locus_tag="SERP0022"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187622.1"
/db_xref="GI:57865975"
/db_xref="GeneID:3242385"
/translation="MKKVFMIISILTITVTLSACGGSGKQKEPSKESQKSDKYDYVYY
EILNDGDSETPNVEIKYKDKKGKSHIEKADLDHVYEHILGDGNKKPYIVKDGKKIHVY
RPPYMIYGDDDVEGKAVSKDEVTK"
gene complement(19519..19659)
/locus_tag="SERP0023"
/db_xref="GeneID:3242386"
CDS complement(19519..19659)
/locus_tag="SERP0023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187623.1"
/db_xref="GI:57865976"
/db_xref="GeneID:3242386"
/translation="MRYAFIALERLILVLEEVEPLDAEAALLLELELAELELLVPPDV
VA"
gene 20149..20727
/locus_tag="SERP0024"
/db_xref="GeneID:3242664"
CDS 20149..20727
/locus_tag="SERP0024"
/EC_number="3.4.21.89"
/note="identified by match to protein family HMM PF00461"
/codon_start=1
/transl_table=11
/product="signal peptidase I"
/protein_id="YP_187624.1"
/db_xref="GI:57865986"
/db_xref="GeneID:3242664"
/translation="MKKEIIEWIVAIIVAIVIVTLVQKFLFASYTVKGASMHPTFENR
EKVIVSRIAKTLDHIDTGDVVIFHANAKQDYIKRLIGKPGDSVEYKKDQLYLNGKKVD
EPYLSENKKHKVGEYLTENFKSRDLKGTNGNMKIPSGKYLVLGDNRQNSIDSRMDEVG
LLDKNQVVGKVVLRYWPFNRWGGSFNPGTFPN"
misc_feature 20206..20685
/locus_tag="SERP0024"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:213694"
misc_feature 20236..>20391
/locus_tag="SERP0024"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature order(20254..20256,20377..20379)
/locus_tag="SERP0024"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
misc_feature <20569..20661
/locus_tag="SERP0024"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
gene complement(20789..22153)
/locus_tag="SERP0025"
/db_xref="GeneID:3242488"
CDS complement(20789..22153)
/locus_tag="SERP0025"
/note="identified by match to protein family HMM PF00083"
/codon_start=1
/transl_table=11
/product="major facilitator family transporter"
/protein_id="YP_187625.1"
/db_xref="GI:57865987"
/db_xref="GeneID:3242488"
/translation="MDFVKSKTDLFRLIDNEAQTSTSKMVLFLILGTIFLDAYDITIL
GTMTDQLTQQFHLSPSTLSIVMTSLPIGALFGALLGGTLAHQFGRKRILSIALLTLTV
TSLGAALAPNVIILIICRCIMGFAIGMDSPVAFTFIAEISNLKHKGRNVNYWQVVWYV
AIVTSALVVTAFFMLGAGAHLWRYAVGFGALIAFVLYILRIKYLHESPTWVINHYSLE
KATEFIRKYYHKDIHLEGTLEDDLNSDVTSPHNSWTDLFKPRYIKRIILATAISTLQG
MQYYGVGLYIPIIATYLISKDKIGVLLGTAIVNIAGILGAYLGAQLTYKLGTRKLTMI
GFTLVLLSMVCVGLFYHHLPMLLNTFLIGLFLFGHSGGPGTQGKTIGALSFPTHLRSQ
ATGFVESVSRTGSIIGTFVFPIILAAVGLTNTMLILSIVPLLGIIITVSIKWEAVGKH
IEVE"
misc_feature complement(20930..22129)
/locus_tag="SERP0025"
/note="benzoate transport; Region: 2A0115; TIGR00895"
/db_xref="CDD:213568"
misc_feature complement(<21542..22075)
/locus_tag="SERP0025"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(21668..21670,21686..21691,21698..21703,
21737..21739,21746..21751,21758..21763,21770..21775,
21911..21916,21920..21925,21935..21937,21944..21949,
21956..21958,22007..22012,22016..22024,22031..22033))
/locus_tag="SERP0025"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(20825..>21376)
/locus_tag="SERP0025"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 23557..23814
/locus_tag="SERP0026"
/db_xref="GeneID:3242489"
CDS 23557..23814
/locus_tag="SERP0026"
/note="identified by match to protein family HMM PF04650;
match to protein family HMM TIGR01168"
/codon_start=1
/transl_table=11
/product="sdrF protein, truncation"
/protein_id="YP_187626.1"
/db_xref="GI:57865988"
/db_xref="GeneID:3242489"
/translation="MKKRRQEPINKRVDFLSNKVNKYSIRKFTVGTASILVGATLMFG
AADNEAKAAEDNQLESASKEEQKGSRDFEVVLCHLFIEEFQ"
misc_feature 23605..23685
/locus_tag="SERP0026"
/note="YSIRK type signal peptide; Region: YSIRK_signal;
pfam04650"
/db_xref="CDD:147013"
gene complement(23740..23994)
/locus_tag="SERP0027"
/db_xref="GeneID:3242490"
CDS complement(23740..23994)
/locus_tag="SERP0027"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187627.1"
/db_xref="GI:57865989"
/db_xref="GeneID:3242490"
/translation="MENLLEVQQLNKSYKNSEFQLTDITFSVKPGEVVGLIGKNGSGK
STLINTLVGNRHKDNGSLKFFDKEVTENDFKITTTFLFFF"
misc_feature complement(<23767..23982)
/locus_tag="SERP0027"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature complement(23860..23883)
/locus_tag="SERP0027"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(23857..23865,23869..23874))
/locus_tag="SERP0027"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
gene complement(24022..24756)
/locus_tag="SERP0028"
/db_xref="GeneID:3242491"
CDS complement(24022..24756)
/locus_tag="SERP0028"
/note="identified by similarity to OMNI:SA0421"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187628.1"
/db_xref="GI:57865990"
/db_xref="GeneID:3242491"
/translation="MKIKRYALLCLLGGLVGGIIGYIIGAINWEKLFNYAQFANFKVV
LYTTIVASLINIILTVYLFIVQNASLHYKAKIDANISDDLADTYENKSYIKSLKVRFI
YTMQLIVAFIAILIPVIGNASENHIALIMIPFIITIISSIMIGIFYRKFDARYPKLGE
KRYTEKAFNIMDEGERYITLVSSYKVHQQNIVLLFIGIMTLGIFSITTGMNQSLGIIL
FIILFIYNSLGYLLKVSNFYKSEQKS"
misc_feature complement(24043..24669)
/locus_tag="SERP0028"
/note="Protein of unknown function (DUF3169); Region:
DUF3169; pfam11368"
/db_xref="CDD:221096"
gene complement(24753..24956)
/locus_tag="SERP0029"
/db_xref="GeneID:3242492"
CDS complement(24753..24956)
/locus_tag="SERP0029"
/note="identified by match to protein family HMM PF01381"
/codon_start=1
/transl_table=11
/product="Cro/CI family transcriptional regulator"
/protein_id="YP_187629.1"
/db_xref="GI:57865991"
/db_xref="GeneID:3242492"
/translation="MRNRLKELRARDGYNQTELAKKAGISRQTVSLIERNDFTPSILT
AIKIARIFGEPVEDIFIMEEEDF"
misc_feature complement(24780..24950)
/locus_tag="SERP0029"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature complement(order(24852..24854,24927..24929,24939..24941))
/locus_tag="SERP0029"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature complement(order(24855..24857,24930..24932))
/locus_tag="SERP0029"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature complement(order(24849..24854,24864..24866,24873..24875,
24906..24911))
/locus_tag="SERP0029"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 25242..25442
/locus_tag="SERP0030"
/db_xref="GeneID:3242493"
CDS 25242..25442
/locus_tag="SERP0030"
/note="identified by similarity to OMNI:NTL01SA2428"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187630.1"
/db_xref="GI:57865992"
/db_xref="GeneID:3242493"
/translation="MSFYRFMKNFEGEKSHFGDLFEGMKDINFPENITTPREIMEKFQ
HWLQEPSLHDTIQDAIKQYQNK"
misc_feature 25311..25430
/locus_tag="SERP0030"
/note="Protein of unknown function (DUF1250); Region:
DUF1250; pfam06855"
/db_xref="CDD:203536"
gene complement(25560..25652)
/locus_tag="SERP0031"
/db_xref="GeneID:3242494"
CDS complement(25560..25652)
/locus_tag="SERP0031"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187631.1"
/db_xref="GI:57865993"
/db_xref="GeneID:3242494"
/translation="MNKYKTIAIVKKQLRHIIYYFDYLFKTRNH"
gene 26288..27472
/locus_tag="SERP0032"
/db_xref="GeneID:3242978"
CDS 26288..27472
/locus_tag="SERP0032"
/note="identified by match to protein family HMM PF00108;
match to protein family HMM PF02803; match to protein
family HMM TIGR01930"
/codon_start=1
/transl_table=11
/product="acetyl-CoA acetyltransferase"
/protein_id="YP_187632.1"
/db_xref="GI:57866008"
/db_xref="GeneID:3242978"
/translation="MSRIVLAEAYRTPIGVFGGVFKDIPAYELGATVIRQILEHSQID
PNEINEVILGNVLQAGQGQNPARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSI
VAGDNEIVIAGGMESMSQSPMLLKNSRFGFKMGNQTLEDSMIADGLTDKFNDYHMGIT
AENLVEQYQISRKEQDQFAFDSQQKASRAQQAGVFDAEIVPVEVPQRKGDPLIISQDE
GIRPQTTIDKLAQLRPAFKKDGSVTAGNASGINDGAAAMLVMTEDKAKALGLQPIAVL
DSFGASGVAPSIMGIGPVEAIHKALKRSNKVINDVDIFELNEAFAAQSIAVNRELQLP
QDKVNVNGGAIALGHPIGASGARTLVSLLHQLSDAKPTGVASLCIGGGQGIATVVSKY
EV"
misc_feature 26288..27454
/locus_tag="SERP0032"
/note="putative acyltransferase; Provisional; Region:
PRK05790"
/db_xref="CDD:180261"
misc_feature 26300..27454
/locus_tag="SERP0032"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:238383"
misc_feature order(26354..26356,26435..26437,26477..26479,26486..26488,
26498..26500,26531..26542,26564..26566,26585..26590,
26597..26599,26642..26644,27122..27124,27128..27130,
27134..27136,27194..27196,27428..27433)
/locus_tag="SERP0032"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238383"
misc_feature order(26549..26551,27332..27334,27419..27421)
/locus_tag="SERP0032"
/note="active site"
/db_xref="CDD:238383"
gene complement(27690..28433)
/locus_tag="SERP0033"
/db_xref="GeneID:3242979"
CDS complement(27690..28433)
/locus_tag="SERP0033"
/note="identified by similarity to OMNI:SA0427; match to
protein family HMM PF04199"
/codon_start=1
/transl_table=11
/product="cyclase"
/protein_id="YP_187633.1"
/db_xref="GI:57866009"
/db_xref="GeneID:3242979"
/translation="MSQYPLWNQLNTLKEAQWVDLTHTFDPNIPRFSEFEKGEVSTLF
NVKDHGFYVQRWSIVTQYGTHIDAPIHFVENRRYLEELDLKELVLPLIVLDYSKEAAQ
NSDFIVSRKHLEDWEQQHGRIEAGTFVALRTDWSKRWPDIEKFENKDVDGHQHLPGWG
LDALKFLIEERGVKSIGHETFDTDASIDTAKNGDIVGERYILGQDTFQVELLTNLDQL
PTRGAIIYAISPKPKDAPGFPVRAFAIKP"
misc_feature complement(27693..28397)
/locus_tag="SERP0033"
/note="Kynurenine formamidase [Amino acid transport and
metabolism]; Region: COG1878"
/db_xref="CDD:224790"
gene complement(28455..30701)
/gene="metE"
/locus_tag="SERP0034"
/db_xref="GeneID:3240867"
CDS complement(28455..30701)
/gene="metE"
/locus_tag="SERP0034"
/EC_number="2.1.1.14"
/note="catalyzes the transfer of a methyl group from
5-methyltetrahydrofolate to homocysteine to form
methionine"
/codon_start=1
/transl_table=11
/product="5-methyltetrahydropteroyltriglutamate--
homocysteine S-methyltransferase"
/protein_id="YP_187634.1"
/db_xref="GI:57865964"
/db_xref="GeneID:3240867"
/translation="MTTIKTSNLGFPRLGRKREWKKAIENYWAHKIDKAELDQTLTDL
HKENLLLQKNYHLDSIPVGDFSLYDHILDTSLLFNIIPERFQGREVNDDLLFDIARGN
KEHVASALIKWFNTNYHYIVPEWDNVEPKVEKNTLLERFKYAQSINVNAHPVIVGPIT
FVKLSKGGHQSFEEKVETLLPLYKEVLQSLVDAGAEYIQIDEPILVTDDSESYEDITR
KAYDYFANEGLGKYLVIQTYFERVHLKFLSSLPVGGLGLDLVHDNGYNLKQIEDGDFD
QSKALYAGIIDGRNVWAADIEAKKQLIETLQQHTQQLVIQPSSSLLHVPVSLDDETLD
ESIAEGLSFATEKLDELDALRRLFNDNDLSKYEHYKARYERFQSQSFKNLEYDFESVP
THRKSPFAKRKQLQNQRLNLPDLPTTTIGSFPQTREIRKFRADWKNNRITDAEYQEFL
QNEIARWIKIQEDIGLDVLVHGEFERNDMVEFFGEKLQGFLVTKFGWVQSYGSRAVKP
PVIYGDVKWTAPLTVKETVYAQSLTDKPVKGMLTGPVTILNWSFERVDVPRKVVQDQI
ALAIDEEVLALEEAGIKVIQVDEPALREGLPLRSEYHEQYLEDAVHSFKLATSSVHDE
TQIHTHMCYSQFGQIIHAIHDLDADVISIETSRSHGDLIQDFEDINYDLGIGLGVYDI
HSPRIPTEEEITTAINRSLQQIDRSLFWVNPDCGLKTRKENEVKDALTVLVNAVKKKR
QESESTTA"
misc_feature complement(28476..30695)
/gene="metE"
/locus_tag="SERP0034"
/note="5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase; Provisional; Region: PRK05222"
/db_xref="CDD:179966"
misc_feature complement(29631..30689)
/gene="metE"
/locus_tag="SERP0034"
/note="CIMS - Cobalamine-independent methonine synthase,
or MetE, N-terminal domain_like. Many members have been
characterized as
5-methyltetrahydropteroyltriglutamate-homocysteine
methyltransferases, EC:2.1.1.14, mostly from bacteria and
plants. This enzyme...; Region: CIMS_N_terminal_like;
cd03312"
/db_xref="CDD:48147"
misc_feature complement(order(30345..30347,30351..30353,30366..30368,
30639..30641,30648..30650))
/gene="metE"
/locus_tag="SERP0034"
/note="THF binding site; other site"
/db_xref="CDD:48147"
misc_feature complement(28491..29456)
/gene="metE"
/locus_tag="SERP0034"
/note="CIMS - Cobalamine-independent methonine synthase,
or MetE, C-terminal domain_like. Many members have been
characterized as
5-methyltetrahydropteroyltriglutamate-homocysteine
methyltransferases, EC:2.1.1.14, mostly from bacteria and
plants. This enzyme...; Region: CIMS_C_terminal_like;
cd03311"
/db_xref="CDD:48146"
misc_feature complement(order(28554..28559,28806..28808,28812..28814,
28938..28940,28944..28946,29265..29267,29283..29285,
29436..29444))
/gene="metE"
/locus_tag="SERP0034"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48146"
misc_feature complement(order(28932..28934,29052..29054,29184..29192))
/gene="metE"
/locus_tag="SERP0034"
/note="THF binding site; other site"
/db_xref="CDD:48146"
misc_feature complement(order(28557..28559,28740..28742,28806..28808,
28812..28814))
/gene="metE"
/locus_tag="SERP0034"
/note="zinc-binding site [ion binding]; other site"
/db_xref="CDD:48146"
gene complement(30698..32536)
/locus_tag="SERP0035"
/db_xref="GeneID:3240868"
CDS complement(30698..32536)
/locus_tag="SERP0035"
/EC_number="2.1.1.10"
/note="catalyzes the formation of
5,10-methylenetetrahydrofolate from
5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and
methionine from S-adenosyl-L-methionine and
L-homocysteine; expressed in B. subtilis under methionine
starvation conditions"
/codon_start=1
/transl_table=11
/product="bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase protein"
/protein_id="YP_187635.1"
/db_xref="GI:57865965"
/db_xref="GeneID:3240868"
/translation="MSHLLNQLKSNVLVADGAIGTIFYSEGLDTCPESYNLTHPDKVE
RIHRSYIEAGADVIQTNTYGANFEKLKSFGLEHKVKEIHQAAVQIAKHAANEDTIILG
TVGGFRGVRQEDISLSTIQYHTELQIDTLIDEGVDALLFETYYDLDELTRIVTATRQK
YDIPIIAQLTASNTNYLVDGTEINAALKYVVECGANVVGLNCHHGPHHMQRSFSHIEL
PKHAYLSCYPNASLLDIENSEFKYSDNAQYFGDIAQELINEGVRLIGGCCGTTPEHIR
YIKSAVKHLKPVKDKKVIPINKASSQKQTRVLKQNLTSKVKNGPTVIVELDTPKHLDT
DTFFDNVGKLDEAGIDAVTLADNSLATVRVSNIAAASLIKQRYDIEPLVHVTCRDRNL
IGLQSHLLGLSLIGVNEILAITGDPSKVGHLPGATNVYDVNSKGLTELALRFNKGINT
DGDALKKHTNFNIAGAFDPNVRKLDGAIKRLEKKVASGMSYFITQPVYSKEKIIQVYE
ETKHLNTPFFIGIMPIASYNNALFLHNEVPGIKMSDDVLNQFKAVKDDKEKTKELSLR
LSKELIDTVHEYFNGLYIITPFQKVDYSLELAAYSKSITANKEAIL"
misc_feature complement(30707..32536)
/locus_tag="SERP0035"
/note="bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase protein; Reviewed; Region: PRK08645"
/db_xref="CDD:181520"
misc_feature complement(31688..32536)
/locus_tag="SERP0035"
/note="Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism]; Region: MetH; COG0646"
/db_xref="CDD:30991"
misc_feature complement(30770..31573)
/locus_tag="SERP0035"
/note="Methylenetetrahydrofolate reductase (MTHFR).
5,10-Methylenetetrahydrofolate is reduced to
5-methyltetrahydrofolate by methylenetetrahydrofolate
reductase, a cytoplasmic, NAD(P)-dependent enzyme.
5-methyltetrahydrofolate is utilized by methionine
synthase...; Region: MTHFR; cd00537"
/db_xref="CDD:29637"
misc_feature complement(order(30782..30784,31052..31054,31058..31060,
31085..31090,31097..31099,31106..31108,31127..31129,
31133..31135,31157..31159,31175..31177,31235..31240,
31292..31300,31385..31387,31469..31471))
/locus_tag="SERP0035"
/note="FAD binding site [chemical binding]; other site"
/db_xref="CDD:29637"
gene complement(32490..33665)
/locus_tag="SERP0036"
/db_xref="GeneID:3240869"
CDS complement(32490..33665)
/locus_tag="SERP0036"
/note="identified by match to protein family HMM PF01053"
/codon_start=1
/transl_table=11
/product="trans-sulfuration enzyme family protein"
/protein_id="YP_187636.1"
/db_xref="GI:57865966"
/db_xref="GeneID:3240869"
/translation="MSLSKETEVIFDVRRGKDYDSANPPLYDSSTFHQKVLGGETQYD
YARSGNPNRTLLEEKLARLEGGKYAFAYASGIAAISAVLLTLNAGDHVILPDDVYGGT
FRLTEQILNRFNIEFTTVNATHIDHITEAIQSNTKLIYVETPSNPLFKITDIHAVATL
AKEHKILLAVDNTFMTPLGQSPLALGADIVIHSATKFLGGHSDLIAGAAITNNREVAN
ALYLLQNGTGTALSAYDSWALAKHLKTLPVRFKQSVHNAERLVQFLSQREEISEVYYP
GNNPTHLKQASTGGAVIGFRLKDESKAQKFVDSLTLPLVSVSLGGVETILSHPATMSH
AAVPEDVRRERGITFGLFRLSVGLENPEELIADFNYALKEAFNESFTEPIKEQRFSS"
misc_feature complement(32547..33608)
/locus_tag="SERP0036"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature complement(32544..33599)
/locus_tag="SERP0036"
/note="cystathionine beta-lyase; Provisional; Region:
PRK08064"
/db_xref="CDD:181218"
misc_feature complement(order(32742..32744,32961..32966,32970..32972,
33000..33002,33051..33053,33057..33059,33081..33083,
33345..33347,33354..33356,33369..33371,33435..33440,
33444..33449,33525..33527,33531..33533,33564..33569,
33573..33584))
/locus_tag="SERP0036"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature complement(order(33051..33053,33078..33083,33087..33089,
33153..33155,33240..33242,33369..33371,33438..33446))
/locus_tag="SERP0036"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature complement(order(33078..33083,33087..33089,33144..33146,
33153..33155,33369..33371,33438..33446))
/locus_tag="SERP0036"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature complement(33078..33080)
/locus_tag="SERP0036"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
gene complement(33662..34765)
/locus_tag="SERP0037"
/db_xref="GeneID:3242377"
CDS complement(33662..34765)
/locus_tag="SERP0037"
/note="identified by match to protein family HMM PF01053"
/codon_start=1
/transl_table=11
/product="trans-sulfuration enzyme family protein"
/protein_id="YP_187637.1"
/db_xref="GI:57865967"
/db_xref="GeneID:3242377"
/translation="MKDTDLAQIALTQDHTGAIANPIYLSTAYQHPHLGESTGYDYTR
TKNPTRTAFEEAFAQLEKGIASFATSSGMAAIQLICNIFKPGDEILVAFDLYGGTFRL
FDFYEKQYGLKFKYVDFLNYEEVEKNITPQTRALFIEPISNPQMIEIDVETYYILSKK
HQLLTIIDNTFLTPYLSTPLEEGADIVLHSATKYIGGHNDVLAGVVTVKDAQLAEQLN
QFHNMIGATLSPLDSYLLQRGLKTLHLRIERSQENAQKLAQRCRQSDSIDEVLYSGRT
GMLSLRLNQAYSVAKFLENLEICIFAESLGGTETFITFPYTQTHVDMPDEEKDKRGID
EYLIRLSVGIEDYNDIEADIIQALENSKVGVIS"
misc_feature complement(33680..34759)
/locus_tag="SERP0037"
/note="cystathionine gamma-synthase; Reviewed; Region:
PRK08247"
/db_xref="CDD:181320"
misc_feature complement(33689..34717)
/locus_tag="SERP0037"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature complement(order(33884..33886,34070..34075,34079..34081,
34109..34111,34160..34162,34166..34168,34190..34192,
34454..34456,34463..34465,34478..34480,34544..34549,
34553..34558,34634..34636,34640..34642,34673..34678,
34682..34693))
/locus_tag="SERP0037"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature complement(order(34160..34162,34187..34192,34196..34198,
34262..34264,34349..34351,34478..34480,34547..34555))
/locus_tag="SERP0037"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature complement(order(34187..34192,34196..34198,34253..34255,
34262..34264,34478..34480,34547..34555))
/locus_tag="SERP0037"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature complement(34187..34189)
/locus_tag="SERP0037"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
gene 35494..36336
/locus_tag="SERP0038"
/db_xref="GeneID:3242655"
CDS 35494..36336
/locus_tag="SERP0038"
/note="identified by similarity to EGAD:13122; match to
protein family HMM PF02195; match to protein family HMM
TIGR00180"
/codon_start=1
/transl_table=11
/product="spoOJ protein"
/protein_id="YP_187638.1"
/db_xref="GI:57865977"
/db_xref="GeneID:3242655"
/translation="MVYTDDQRLKMNNDDSVQFIALELIRPNPYQPRKTFEEERLNDL
ASSIQQHGILQPIVLRQTVQGYYIVVGERRFRASKLAGLTEVPAIIKELSDEDMMELA
IIENLQREDLNAIEEAESYKKMMTDLNITQQEVARRLGKSRPYIANMLRLLQLPKNVA
QMVQHGALSSAHGRTLLTLKDASKIKKTAKQAAQESWSVRYLEEYVNGLVSKDISRKV
DKETKESKPKMIQQQERFLKKQYGAKVDISTSKNVGKITFEFKSEAEFKRLIRQLNKD
YKEY"
misc_feature 35542..36057
/locus_tag="SERP0038"
/note="ParB/RepB/Spo0J family partition protein; Region:
parB_part; TIGR00180"
/db_xref="CDD:161748"
misc_feature 35551..35814
/locus_tag="SERP0038"
/note="ParB-like nuclease domain; Region: ParB;
smart00470"
/db_xref="CDD:197744"
misc_feature 35878..>36051
/locus_tag="SERP0038"
/note="KorB domain; Region: KorB; pfam08535"
/db_xref="CDD:149550"
gene 36497..37372
/locus_tag="SERP0039"
/db_xref="GeneID:3242656"
CDS 36497..37372
/locus_tag="SERP0039"
/note="identified by similarity to OMNI:SA0433; match to
protein family HMM PF00924"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187639.1"
/db_xref="GI:57865978"
/db_xref="GeneID:3242656"
/translation="MNQLKHILSSLFEPLTKVETYENLITKVIMILIYILVAIVVIAI
LNKIIEQAFKIQNKSKKGNKKRSKTLISLVQNIVKYIVWFVVITTILSKFGISVEGII
ASAGVVGIAVGFGAQTIVKDIITGFFIIFENQFDVGDYVKINSSGTTVAEGTVKSIGL
RSTRINTISGELTILPNGSMGEITNFSITNGTAIVELPVSVDENIDQVEKKLNRLFVS
LRSKYYLFVSDPVVDGIDAIESNKVTIRISAETIPGEGFSGARIIRKEAQKMFRQEGI
RMPQPVISNYNEGKS"
misc_feature <36701..37360
/locus_tag="SERP0039"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature 36725..37330
/locus_tag="SERP0039"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 37393..37596
/locus_tag="SERP0040"
/db_xref="GeneID:3242657"
CDS 37393..37596
/locus_tag="SERP0040"
/note="identified by similarity to OMNI:NTL01SA0362"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187640.1"
/db_xref="GI:57865979"
/db_xref="GeneID:3242657"
/translation="MTSKYGINDIVEMKKPHACGTNRFKIIRMGADIRIKCEHCQRSV
MIPRQVFNKKMKKVLESHQDKES"
misc_feature 37402..37572
/locus_tag="SERP0040"
/note="Bacterial protein of unknown function (DUF951);
Region: DUF951; pfam06107"
/db_xref="CDD:147978"
gene 37608..38705
/locus_tag="SERP0041"
/gene_synonym="ychF"
/db_xref="GeneID:3242658"
CDS 37608..38705
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="translation-associated GTPase; the crystal
structure of the Haemophilus influenzae YchF protein
showed similarity to the yeast structure (PDB: 1NI3);
fluorescence spectroscopy revealed nucleic acid binding;
the yeast protein YBR025c interacts with the translation
elongation factor eEF1"
/codon_start=1
/transl_table=11
/product="GTP-dependent nucleic acid-binding protein EngD"
/protein_id="YP_187641.1"
/db_xref="GI:57865980"
/db_xref="GeneID:3242658"
/translation="MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIV
EVPDSRLIKLEEMVQPKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQ
VVRAFDDENVTHVSGRVNPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM
ELRILTQIKEALEDGKPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDKDN
DKVKAIREYAANEDSEVIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTY
DLLGLSTYFTAGVQEVRAWTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGG
ENGAKEAGRQRLEGKDYIMQDGDIVHFRFNV"
misc_feature 37608..38702
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="GTP-binding protein YchF; Reviewed; Region:
PRK09601"
/db_xref="CDD:236583"
misc_feature 37620..38444
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="YchF GTPase; Region: YchF; cd01900"
/db_xref="CDD:206687"
misc_feature 37632..37655
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="G1 box; other site"
/db_xref="CDD:206687"
misc_feature order(37641..37643,37647..37658,38226..38231,38235..38237,
38322..38330)
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206687"
misc_feature 37701..37724
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="Switch I region; other site"
/db_xref="CDD:206687"
misc_feature 37713..37715
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="G2 box; other site"
/db_xref="CDD:206687"
misc_feature order(37818..37847,37866..37895)
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="Switch II region; other site"
/db_xref="CDD:206687"
misc_feature 37821..37832
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="G3 box; other site"
/db_xref="CDD:206687"
misc_feature 38226..38237
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="G4 box; other site"
/db_xref="CDD:206687"
misc_feature 38322..38330
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="G5 box; other site"
/db_xref="CDD:206687"
misc_feature 38448..38696
/locus_tag="SERP0041"
/gene_synonym="ychF"
/note="TGS_YchF_C: This subfamily represents TGS
domain-containing YchF GTP-binding protein, a universally
conserved GTPase whose function is unknown. The N-terminal
domain of the YchF protein belongs to the Obg-like family
of GTPases, and some members of the...; Region:
TGS_YchF_C; cd04867"
/db_xref="CDD:133440"
gene complement(38938..39129)
/locus_tag="SERP0042"
/db_xref="GeneID:3242659"
CDS complement(38938..39129)
/locus_tag="SERP0042"
/note="identified by similarity to OMNI:NTL01SA0364"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187642.1"
/db_xref="GI:57865981"
/db_xref="GeneID:3242659"
/translation="MRLNLDWNKDFQEFQDILNSGIHPEWLYCAKANLVLEPAYTGEG
KQFFSTQDIIKASKIIPFF"
gene complement(39203..40012)
/locus_tag="SERP0043"
/db_xref="GeneID:3242660"
CDS complement(39203..40012)
/locus_tag="SERP0043"
/codon_start=1
/transl_table=11
/product="lysozyme domain-containing protein"
/protein_id="YP_187643.1"
/db_xref="GI:57865982"
/db_xref="GeneID:3242660"
/translation="MLKKFSYSIISLSIFATSLNFIDTQAQASSSSVSEKGTMGYGYQ
QYLKDHPKKQTHKTQNRSTFSAESNITETNNGERVLDISEWQGLLTNEQIKQLKKNYD
FIILRAQYGSEYVDKTFEKNAELLEQNKMKYGVYSYSMYESPKDARYEAKTLSQRAPK
AAFYINDYEEQTVKSGDDETATQAWANEMRKLAGNKKILFYSYENFMLNHASNAVSSY
DGYWLAAYQAEEPKREKVLWQYTDSYYSPELNQNVDANYIDENVNSSWFTS"
misc_feature complement(39239..39781)
/locus_tag="SERP0043"
/note="Endo-N-acetylmuramidases (muramidases) are
lysozymes (also referred to as peptidoglycan hydrolases)
that degrade bacterial cell walls by catalyzing the
hydrolysis of 1,4-beta-linkages between N-acetylmuramic
acid and N-acetyl-D-glucosamine residues; Region:
GH25_muramidase; cl10448"
/db_xref="CDD:198985"
misc_feature complement(order(39251..39253,39296..39298,39347..39349,
39410..39412,39506..39508,39512..39514,39599..39601,
39605..39607,39692..39694,39770..39772))
/locus_tag="SERP0043"
/note="active site"
/db_xref="CDD:119373"
misc_feature complement(39266..39772)
/locus_tag="SERP0043"
/note="Glycosyl hydrolases family 25; Region:
Glyco_hydro_25; pfam01183"
/db_xref="CDD:201645"
gene 40397..40693
/gene="rpsF"
/locus_tag="SERP0044"
/db_xref="GeneID:3242661"
CDS 40397..40693
/gene="rpsF"
/locus_tag="SERP0044"
/note="binds cooperatively with S18 to the S15-16S
complex, allowing platform assembly to continue with S11
and S21"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_187644.1"
/db_xref="GI:57865983"
/db_xref="GeneID:3242661"
/translation="MRTYEIMYIVRPNIEEDAKKALVERFNGILASEGSEVLEEKDWG
KRRLAYEINDFKEGFYNIVRIKTDNNKSTDEFQRLAKINDDIIRYIVIREDQDK"
misc_feature 40397..40690
/gene="rpsF"
/locus_tag="SERP0044"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 40716..41225
/gene="ssb"
/locus_tag="SERP0045"
/db_xref="GeneID:3242662"
CDS 40716..41225
/gene="ssb"
/locus_tag="SERP0045"
/note="identified by similarity to EGAD:17778; match to
protein family HMM PF00436; match to protein family HMM
TIGR00621"
/codon_start=1
/transl_table=11
/product="single-stranded DNA-binding protein"
/protein_id="YP_187645.1"
/db_xref="GI:57865984"
/db_xref="GeneID:3242662"
/translation="MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGER
EADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSRSYENQEGRRIFVTEVVCDSVQF
LEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF"
misc_feature 40716..41222
/gene="ssb"
/locus_tag="SERP0045"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:223702"
misc_feature 40728..41024
/gene="ssb"
/locus_tag="SERP0045"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:239942"
misc_feature order(40728..40739,40812..40820,40854..40856,40860..40862,
40923..40925,40950..40952,40983..40985,40992..40994)
/gene="ssb"
/locus_tag="SERP0045"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239942"
misc_feature order(40743..40751,40767..40769,40797..40799,40818..40823,
40848..40853,40857..40859,40863..40865,40869..40871,
40875..40877,40914..40919,40941..40943,40947..40949,
40953..40958,40995..40997,41001..41003)
/gene="ssb"
/locus_tag="SERP0045"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:239942"
misc_feature order(40923..40925,40929..40931,40935..40937,41016..41018)
/gene="ssb"
/locus_tag="SERP0045"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239942"
gene 41270..41512
/gene="rpsR"
/locus_tag="SERP0046"
/db_xref="GeneID:3242663"
CDS 41270..41512
/gene="rpsR"
/locus_tag="SERP0046"
/note="binds as a heterodimer with protein S6 to the
central domain of the 16S rRNA; helps stabilize the
platform of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_187646.1"
/db_xref="GI:57865985"
/db_xref="GeneID:3242663"
/translation="MAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKI
LPRRVTGTSAKYQRMLTTAIKRARHMALLPYVKEEQ"
misc_feature 41306..41503
/gene="rpsR"
/locus_tag="SERP0046"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene complement(41612..41877)
/locus_tag="SERP0047"
/note="conserved hypothetical protein, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to OMNI:SA0445"
/pseudo
/db_xref="GeneID:3242495"
gene complement(41982..42242)
/locus_tag="SERP0048"
/db_xref="GeneID:3242496"
CDS complement(41982..42242)
/locus_tag="SERP0048"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187647.1"
/db_xref="GI:57865994"
/db_xref="GeneID:3242496"
/translation="MQHKNKFQRINQIIQVIGFLSFLAILTIITLNFFIKGHLQGHFE
IGFNIQSNQVYVVTTLIIVTIICTILSAILNMLSNKKQNYKH"
gene 42464..42718
/locus_tag="SERP0049"
/db_xref="GeneID:3242497"
CDS 42464..42718
/locus_tag="SERP0049"
/note="identified by similarity to OMNI:SA0446; match to
protein family HMM PF04226"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187648.1"
/db_xref="GI:57865995"
/db_xref="GeneID:3242497"
/translation="MFGLIGMIIVGGIIGWIAGLILGKDVPGGILGNIIAGIVGSWVG
TMILGEWGPQLGKIHIFPALLGSIILIFIISLILKALRKK"
misc_feature <42533..>42619
/locus_tag="SERP0049"
/note="Transglycosylase associated protein; Region:
Transgly_assoc; cl00978"
/db_xref="CDD:242229"
gene 42835..42930
/locus_tag="SERP0050"
/db_xref="GeneID:3240522"
CDS 42835..42930
/locus_tag="SERP0050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187649.1"
/db_xref="GI:57865996"
/db_xref="GeneID:3240522"
/translation="MLMMSNRLSYINYSYQSIQTNKNGVGAFFML"
gene 43190..43822
/locus_tag="SERP0051"
/db_xref="GeneID:3240523"
CDS 43190..43822
/locus_tag="SERP0051"
/note="identified by match to protein family HMM PF01810"
/codon_start=1
/transl_table=11
/product="amino acid transporter LysE"
/protein_id="YP_187650.1"
/db_xref="GI:57865997"
/db_xref="GeneID:3240523"
/translation="MDGLITFIIITLLIIIVPGPDFIIVMKNTINSSKMNGFMAAFGI
TTGHILYSSLAIFGIIYILTSLHFVFLTIKILGACYLIYLGIKSILSAHSSVDFSKQA
LADVRNVSYITSFRQGFLSTSLNPKALLFYVSIFPQFLSNGNIHMKSEVALFAFSVVV
VICLWFLFCVFIFQYIKLLFSRPRFKAIFDYIVGFVLIGLSINLLLSKSS"
misc_feature 43238..43816
/locus_tag="SERP0051"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:224199"
gene 43843..44433
/locus_tag="SERP0052"
/db_xref="GeneID:3240524"
CDS 43843..44433
/locus_tag="SERP0052"
/note="identified by match to protein family HMM PF00300"
/codon_start=1
/transl_table=11
/product="phosphoglycerate mutase"
/protein_id="YP_187651.1"
/db_xref="GI:57865998"
/db_xref="GeneID:3240524"
/translation="MEIYLVRHGESQSNYDNKHGYLYFCGQLDVPLTERGIKSAKELS
VYFKNKYIDNVYVSDLKRTRQTYEELFPYDIPTIYTKTLRERSLGVFEGKNKEEVCKD
KRFEKYFRDPNYKYFRHSFSQKAPQGESYQDVYDRVVTFIENELNQQQRRVVIVAHQV
VIRCFFVYFKMITKEEALTTEIHNCYPYLIKEEMKF"
misc_feature 43846..44397
/locus_tag="SERP0052"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature order(43861..43866,44026..44028,44314..44319)
/locus_tag="SERP0052"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene 44624..44761
/locus_tag="SERP0053"
/note="conserved hypothetical protein, authentic point
mutation; this gene contains a premature stop which is not
the result of sequencing error; identified by similarity
to OMNI:SA0412"
/pseudo
/db_xref="GeneID:3240525"
gene complement(44849..45079)
/locus_tag="SERP0054"
/db_xref="GeneID:3240526"
CDS complement(44849..45079)
/locus_tag="SERP0054"
/note="identified by similarity to OMNI:NTL01SA0377"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187652.1"
/db_xref="GI:57865999"
/db_xref="GeneID:3240526"
/translation="MALPALILGIFNHLACRIISAILQISALMMWGFLVIISLIMGQI
VIMLMASLTILALLVSSIVTLSVHPSTSDKIN"
gene 45180..45278
/locus_tag="SERP0055"
/db_xref="GeneID:3240527"
CDS 45180..45278
/locus_tag="SERP0055"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187653.1"
/db_xref="GI:57866000"
/db_xref="GeneID:3240527"
/translation="MVDSIAKIINVKRIFIMIFLISFYLEKIYMLY"
gene 45300..45425
/locus_tag="SERP0056"
/db_xref="GeneID:3240528"
CDS 45300..45425
/locus_tag="SERP0056"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187654.1"
/db_xref="GI:57866001"
/db_xref="GeneID:3240528"
/translation="MNCQNSEGMFQKDGVMKLTRISKTSPKKMLVQHLFWASKIM"
gene complement(45446..46069)
/locus_tag="SERP0057"
/db_xref="GeneID:3240529"
CDS complement(45446..46069)
/locus_tag="SERP0057"
/note="identified by similarity to OMNI:SA0449"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187655.1"
/db_xref="GI:57866002"
/db_xref="GeneID:3240529"
/translation="MKKRVITYLILALSLTLAACSNTNDNNNQEHHSNAHAPKNAKTL
KEKDIFSSNKKGQKISEKEMKQALEKYLQANSDVLDNKYVMQHKLDKQSDSNPKITES
QADRLSKLSNLAVKNDLHFKKFIKNNHIPEEYKDPTDRIINYFHALNSTISNVDEDIE
KLNYQPQNSINVVDVATKYSGDVNKKQQDKITTFLKKKGIDTEVFNK"
gene 46212..46340
/locus_tag="SERP0058"
/db_xref="GeneID:3240530"
CDS 46212..46340
/locus_tag="SERP0058"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187656.1"
/db_xref="GI:57866003"
/db_xref="GeneID:3240530"
/translation="MADYMNDIPVSIGFFIIKNRAPTWELCEVKIFMINNVLKINF"
gene complement(46330..47853)
/gene="ahpF"
/locus_tag="SERP0059"
/db_xref="GeneID:3242974"
CDS complement(46330..47853)
/gene="ahpF"
/locus_tag="SERP0059"
/EC_number="1.8.1.-"
/note="identified by similarity to EGAD:30995; match to
protein family HMM PF00070"
/codon_start=1
/transl_table=11
/product="alkyl hydroperoxide reductase"
/protein_id="YP_187657.1"
/db_xref="GI:57866004"
/db_xref="GeneID:3242974"
/translation="MLNADLKQQLQQLLELMEGDVEFVASLGSDDKSNELKELLNEMA
EMSAHITITEKSLKRTPSFSVNRPGEETGITFAGIPLGHEFNSLVLAILQVSGRAPKE
KQSIIDQIKGLEGPFHFETFVSLTCQKCPDVVQALNLMSVINPNITHTMIDGAVFREE
SENIMAVPAVFLDGQEFGNGRMTVQDILTKLGSTQDASEFNDKDPYDVLIVGGGPASG
SAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAEHIAQYDID
TMTGIRATNIEKTDSAIRVTLENDAVLESKTVIISTGASWRKLNIPGEDRLINKGVAF
CPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVKHVTLFEYASELKADSVLQERLRS
LPNVDIKTSAKTTEVIGDDYVTGISYEDMTTGESQVVNLDGIFVQIGLVPNTSWLQNA
VELNERGEVMINRDNATNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN"
misc_feature complement(46333..47853)
/gene="ahpF"
/locus_tag="SERP0059"
/note="alkyl hydroperoxide reductase subunit F;
Provisional; Region: PRK15317"
/db_xref="CDD:237942"
misc_feature complement(47575..47853)
/gene="ahpF"
/locus_tag="SERP0059"
/note="Alkyl hydroperoxide reductase F subunit (AhpF)
N-terminal domain (NTD) family, N-terminal TRX-fold
subdomain; AhpF is a homodimeric flavoenzyme which
catalyzes the NADH-dependent reduction of the
peroxiredoxin AhpC, which in turn catalyzes the
reduction...; Region: AhpF_NTD_N; cd02974"
/db_xref="CDD:239272"
misc_feature complement(47602..47604)
/gene="ahpF"
/locus_tag="SERP0059"
/note="catalytic residue [active]"
/db_xref="CDD:239272"
misc_feature complement(47284..47544)
/gene="ahpF"
/locus_tag="SERP0059"
/note="TRX-GRX-like family, Alkyl hydroperoxide reductase
F subunit (AhpF) N-terminal domain (NTD) subfamily,
C-terminal TRX-fold subdomain; AhpF is a homodimeric
flavoenzyme which catalyzes the NADH-dependent reduction
of the peroxiredoxin AhpC, which then...; Region:
AhpF_NTD_C; cd03026"
/db_xref="CDD:239324"
misc_feature complement(order(47464..47466,47473..47475))
/gene="ahpF"
/locus_tag="SERP0059"
/note="catalytic residues [active]"
/db_xref="CDD:239324"
misc_feature complement(46732..47229)
/gene="ahpF"
/locus_tag="SERP0059"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; cl17500"
/db_xref="CDD:248054"
misc_feature complement(46621..46812)
/gene="ahpF"
/locus_tag="SERP0059"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
gene complement(47868..48437)
/gene="ahpC"
/locus_tag="SERP0060"
/db_xref="GeneID:3242975"
CDS complement(47868..48437)
/gene="ahpC"
/locus_tag="SERP0060"
/note="identified by similarity to EGAD:37649; match to
protein family HMM PF00578"
/codon_start=1
/transl_table=11
/product="alkyl hydroperoxide reductase"
/protein_id="YP_187658.1"
/db_xref="GI:57866005"
/db_xref="GeneID:3242975"
/translation="MSLINKEILPFTAQAYDPKKDEFKEVTQEDFKGSWNVVCFYPAD
FSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAWHDHSDAISKLEYSMIGDP
SQTITRNFDVLDEETGLAQRGTFIIDPDGVVQAAEINADGIGRDASTLVNKIKAAQYV
RQHPGEVCPAKWEEGSESLQPGLDLVGKI"
misc_feature complement(47871..48437)
/gene="ahpC"
/locus_tag="SERP0060"
/note="peroxiredoxin; Region: AhpC; TIGR03137"
/db_xref="CDD:211789"
misc_feature complement(47913..48428)
/gene="ahpC"
/locus_tag="SERP0060"
/note="Peroxiredoxin (PRX) family, Typical 2-Cys PRX
subfamily; PRXs are thiol-specific antioxidant (TSA)
proteins, which confer a protective role in cells through
its peroxidase activity by reducing hydrogen peroxide,
peroxynitrite, and organic hydroperoxides; Region:
PRX_Typ2cys; cd03015"
/db_xref="CDD:239313"
misc_feature complement(order(47925..47936,47982..47984,48003..48008,
48018..48026,48030..48038,48075..48077,48105..48107,
48285..48287,48294..48299,48426..48428))
/gene="ahpC"
/locus_tag="SERP0060"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239313"
misc_feature complement(order(48090..48092,48126..48128,48132..48134,
48198..48203,48303..48305))
/gene="ahpC"
/locus_tag="SERP0060"
/note="decamer (pentamer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239313"
misc_feature complement(order(48072..48074,48291..48293,48300..48302))
/gene="ahpC"
/locus_tag="SERP0060"
/note="catalytic triad [active]"
/db_xref="CDD:239313"
misc_feature complement(order(47934..47936,48291..48293))
/gene="ahpC"
/locus_tag="SERP0060"
/note="peroxidatic and resolving cysteines [active]"
/db_xref="CDD:239313"
gene complement(48882..49661)
/locus_tag="SERP0061"
/db_xref="GeneID:3242976"
CDS complement(48882..49661)
/locus_tag="SERP0061"
/note="identified by match to protein family HMM PF01689"
/codon_start=1
/transl_table=11
/product="2-keto-4-pentenoate hydratase"
/protein_id="YP_187659.1"
/db_xref="GI:57866006"
/db_xref="GeneID:3242976"
/translation="MTLTNKEVAKVLFKAYRYKKPIDFISENYQLNEEEAYHVQEELI
DQLTFKDRSTVTGYKVSMTSKATQAIANTNEPAYGTLLSNQIVNDGASVSLSELFSPL
LEPEIIFIVQEDLPYDADLETIRYHTRIAPGIEIPDARYKNWFPNFTLSDLISDNTAT
GLVVVGDPVDGLDNDAFANVHLNLYKDDKCIATGESSKVLGNPLNAIHWLIKKLHTHG
KQLKKGDIISSGTFISPLKLEYGTYRAEYSGIGKVSFSVNK"
misc_feature complement(48894..49643)
/locus_tag="SERP0061"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; cl11421"
/db_xref="CDD:245608"
gene 49802..50557
/locus_tag="SERP0062"
/db_xref="GeneID:3242977"
CDS 49802..50557
/locus_tag="SERP0062"
/note="identified by similarity to EGAD:18715; match to
protein family HMM PF00881"
/codon_start=1
/transl_table=11
/product="NAD(P)H-flavin oxidoreductase"
/protein_id="YP_187660.1"
/db_xref="GI:57866007"
/db_xref="GeneID:3242977"
/translation="MSDYVYELMKQHHSVRKFKNQPLGSETVEKLVEAGQSASTSSYL
QTYSIIGVEDPSIKARLKEVSGQPYVLDNGYLFVFVLDYYRHHLVDEVAASNMETSYG
SAEGLLVGTIDVALVAQNMAVAAEDMGYGIVYLGSLRNDVARVREILNLPDYTFPLFG
MAVGEPSDEENGSPKPRLPFKHIFHKDQYDANQHQQRKELEAYDQVVSEYYKERTHGV
RTENWSQQIETFLGRKTRLDMLDELKKAGFIQR"
misc_feature 49814..50509
/locus_tag="SERP0062"
/note="This family contains NADPH-dependent flavin
reductase and oxygen-insensitive nitroreductase. These
enzymes are homodimeric flavoproteins that contain one FMN
per monomer as a cofactor. Flavin reductase catalyzes the
reduction of flavin by using NADPH as...; Region:
NfsA_FRP; cd02146"
/db_xref="CDD:239060"
misc_feature order(49814..49816,49826..49831,49835..49837,49901..49903,
49907..49918,49928..49930,49934..49936,49940..49942,
49946..49954,49958..49963,49970..49972,50045..50047,
50126..50128,50147..50149,50156..50161,50168..50170,
50180..50182,50216..50218,50246..50248,50327..50335,
50348..50356,50408..50410,50468..50470,50492..50500,
50507..50509)
/locus_tag="SERP0062"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239060"
misc_feature order(49835..49837,49841..49843,49847..49849,50000..50002,
50006..50008,50207..50212,50216..50221,50276..50278,
50324..50326,50330..50332)
/locus_tag="SERP0062"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239060"
misc_feature order(49847..49849,49928..49930,50216..50221,50315..50317,
50324..50326,50429..50434,50441..50443)
/locus_tag="SERP0062"
/note="NADPH bind site [chemical binding]; other site"
/db_xref="CDD:239060"
gene complement(50679..52067)
/locus_tag="SERP0063"
/db_xref="GeneID:3241649"
CDS complement(50679..52067)
/locus_tag="SERP0063"
/note="identified by match to protein family HMM PF00375"
/codon_start=1
/transl_table=11
/product="sodium:dicarboxylate symporter family protein"
/protein_id="YP_187661.1"
/db_xref="GI:57866016"
/db_xref="GeneID:3241649"
/translation="MEILFTVINVIVLLVFLIMLNIMARKHVSFPKRVFTALAIGIVF
GIVLHLIYGAESKTLEQSTDWFSIVGDGYVALLQMIVMPLIFISIVAAFSKIQIGEKF
AKIGSYIFMFLIGTVAIAAIVGIFYALIFGLDASSIDLGSAEHSRGTEISKQAKDLTA
NTLPQQILEVFPSNPFLDFTGQRTTSTIAVVIFATFVGFAYLRVARKQPEHGSLLKRG
IEAIYSIVMAIVTFVLRLTPYGILAIMASTLATSDFSAIWTLGKFLIASYAALITMYI
IHLIILSVLGINPVKYVKKTIEVLIFAFTSRSSAGALPLNVQTQTKRLGVPEGIANFS
ATFGLSIGQNGCAGIYPAMLAVMVAPVANVEIDFQFVVTLIAVVIISSFGVAGVGGGA
TFASILVLSTLNLPVALAGVLISIEPLIDMGRTALNVNDSMLAGTGTARLTNHWDKKT
FDSNDYGDLSAN"
misc_feature complement(50703..51998)
/locus_tag="SERP0063"
/note="Predicted Na+/dicarboxylate symporter [General
function prediction only]; Region: COG1823"
/db_xref="CDD:224736"
misc_feature complement(50781..51983)
/locus_tag="SERP0063"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:224220"
gene complement(52376..53278)
/locus_tag="SERP0064"
/db_xref="GeneID:3241650"
CDS complement(52376..53278)
/locus_tag="SERP0064"
/note="identified by similarity to OMNI:SA0455"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187662.1"
/db_xref="GI:57866017"
/db_xref="GeneID:3241650"
/translation="MLTKEFAQRVELSEKQVRKIVQHLEERGYHLSKTEYRGREATDF
KEDDIELFTDIANKVKQTNSYDLAFEELEKEKDFLQVIVKDEDSQLPTDQNVAQLVED
LRSEIQKMREERQMLGQMINQVHQQQQELKELQTDITTKLDSNAQSLKSIQNSQEAIQ
SAQEQQSKDIAKANELKDSELRSHFDSMSNSASISQSNVASQSTTASLSQSESANDSM
SSSLSESNSITSESNTNSKSEIESKSTSTSEFLSESGSVSNSEKSESISHSQSTSATP
SSQSTYQQQPKEEKKGFFARLFNL"
gene complement(53404..54069)
/locus_tag="SERP0065"
/db_xref="GeneID:3241651"
CDS complement(53404..54069)
/locus_tag="SERP0065"
/note="identified by similarity to OMNI:SA0456"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187663.1"
/db_xref="GI:57866018"
/db_xref="GeneID:3241651"
/translation="MEFKVIESAKDPLFNEALKLYDDKLDIGLDEDSKIFKRSLENNK
TENDYAFIVGIENQTVVSLATAHYEATTNSAFLIYLIAKESPNHDERMSLTLEAIEKQ
LNLLSQEVHNRDINFIMLEVPKEPSTANIDDKLRNALEHRRQFLFENQFEKQDDIDYI
HPNQNQKETPQKVDLFIKANIELTKDIYGTSVKSNYILKYVFANGISREIIYPLLKEM
NLR"
gene complement(54197..54604)
/locus_tag="SERP0066"
/db_xref="GeneID:3241652"
CDS complement(54197..54604)
/locus_tag="SERP0066"
/note="identified by similarity to OMNI:SA0457"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187664.1"
/db_xref="GI:57866019"
/db_xref="GeneID:3241652"
/translation="MAKITVVNNQDELYKVINQKKSEGYLETELAVISKSKLHLDDLH
NSQISLMATSGSFSDRMSRLLTGEDGEETVLSRYDLTDNELEGYKQDILNDKMLVVAN
SDRSSHDEVEDNNAAYKEVDITHYAAESEGPKA"
misc_feature complement(54302..54598)
/locus_tag="SERP0066"
/note="Heat induced stress protein YflT; Region: YflT;
pfam11181"
/db_xref="CDD:151623"
gene 55201..55779
/gene="xpt"
/locus_tag="SERP0067"
/db_xref="GeneID:3241653"
CDS 55201..55779
/gene="xpt"
/locus_tag="SERP0067"
/EC_number="2.4.2.22"
/note="Catalyzes the transfer of the phosphoribosyl moiety
from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the
6-oxo-guanine and -xanthine"
/codon_start=1
/transl_table=11
/product="xanthine phosphoribosyltransferase"
/protein_id="YP_187665.1"
/db_xref="GI:57866020"
/db_xref="GeneID:3241653"
/translation="MESLGRKVKEDGVVIDEKILKVDGFLNHQIDAKLMNDVGKTFYE
SFKDAGITKILTIEASGIAPAIMASFHFDVPCLFAKKAKPSTLKDGFYSTDIHSFTKN
KTSTVIVSEEFLGADDKVLIIDDFLANGDASLGLNDIVKQANATTVGVGIVVEKSFQN
GRQRLEDAGLYVSSLCKVASLKGNKVTLLGEA"
misc_feature 55351..55704
/gene="xpt"
/locus_tag="SERP0067"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(55372..55374,55378..55380,55570..55578,55582..55596,
55666..55668)
/gene="xpt"
/locus_tag="SERP0067"
/note="active site"
/db_xref="CDD:206754"
gene 55779..57047
/gene="pbuX"
/locus_tag="SERP0068"
/db_xref="GeneID:3241654"
CDS 55779..57047
/gene="pbuX"
/locus_tag="SERP0068"
/note="identified by similarity to EGAD:30678; match to
protein family HMM PF00860; match to protein family HMM
TIGR00801"
/codon_start=1
/transl_table=11
/product="xanthine permease"
/protein_id="YP_187666.1"
/db_xref="GI:57866021"
/db_xref="GeneID:3241654"
/translation="MKNFILSVQHLLAMYAGAILVPIIVGTSLKFSAEEIAYLVTVDI
FMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGLDVLYGSLLISGILVVL
IAPFFSYLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGEGAKNYGDTKNLILGGVTL
LIILILQRFTKGFLKSIAILIGLAIGTALAGIFGMVDIKQVGDAHWFGFPVPFRFSGF
GFDVSSILVFFIVAVVSLIESTGVYHALSEITGRKLERKDFRKGYTAEGLAIILGSIF
NAFPYTAYSQNVGLVSLSGAKKNNVIYGMVILLLICGCIPKLGALANIIPLPVLGGAM
IAMFGMVMAYGVSILGNINFQNQNNLLIIAISVGLGAGISAVPQAFKGLGEQFAWLTQ
NGIVLGAISAIILNFFFNGIKYKQTEENVK"
misc_feature 55803..57008
/gene="pbuX"
/locus_tag="SERP0068"
/note="xanthine permease; Region: pbuX; TIGR03173"
/db_xref="CDD:234136"
gene 57085..58551
/gene="guaB"
/locus_tag="SERP0069"
/db_xref="GeneID:3241655"
CDS 57085..58551
/gene="guaB"
/locus_tag="SERP0069"
/EC_number="1.1.1.205"
/note="identified by match to protein family HMM PF00478;
match to protein family HMM PF00571; match to protein
family HMM PF01574; match to protein family HMM TIGR01302"
/codon_start=1
/transl_table=11
/product="inosine-5'-monophosphate dehydrogenase"
/protein_id="YP_187667.1"
/db_xref="GI:57866022"
/db_xref="GeneID:3241655"
/translation="MWENKFAKESLTFDDVLLIPAASDVLPSDVDLSVKLSDKIKLNI
PVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFL
TPEESVYEAEALMGKYRISGVPIVDNQEDRKLIGILTNRDLRFIEDFSIKISDVMTKD
NLITAPVGTTLDEAEAILQKHKIEKLPLVENGRLEGLITIKDIEKVLEFPYAAKDEHG
RLLAAAAIGTSKDTEIRAQKLVEAGVDALIIDTAHGHSKGVINQVKHIKETYPEITVV
AGNVATAEATRALFEAGADVVKVGIGPGSICTTRVVAGVGVPQITAVYDCATEARKHG
KAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEVFQGRQYKVYRGMGS
LGAMEKGSNDRYFQEDKTPRKFVPEGIEGRTAYKGPLQDTIYQLMGGVRAGMGYTGSE
NLKKLREEAQFTRMGPAGLAESHPHNVQITKESPNYSF"
misc_feature 57091..58545
/gene="guaB"
/locus_tag="SERP0069"
/note="inosine 5'-monophosphate dehydrogenase; Reviewed;
Region: PRK05567"
/db_xref="CDD:235507"
misc_feature 57112..>57351
/gene="guaB"
/locus_tag="SERP0069"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl17186"
/db_xref="CDD:247740"
misc_feature 57370..57699
/gene="guaB"
/locus_tag="SERP0069"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains in the
inosine 5' monophosphate dehydrogenase (IMPDH) protein.
IMPDH is an essential enzyme that catalyzes the first step
unique to GTP synthesis, playing a...; Region:
CBS_pair_IMPDH; cd04601"
/db_xref="CDD:239974"
misc_feature <57736..58476
/gene="guaB"
/locus_tag="SERP0069"
/note="IMPDH: The catalytic domain of the inosine
monophosphate dehydrogenase. IMPDH catalyzes the
NAD-dependent oxidation of inosine 5'-monophosphate (IMP)
to xanthosine 5' monophosphate (XMP). It is a
rate-limiting step in the de novo synthesis of...; Region:
IMPDH; cd00381"
/db_xref="CDD:238223"
misc_feature order(57997..58005,58102..58104,58108..58110,58171..58176,
58243..58245,58249..58257,58333..58338)
/gene="guaB"
/locus_tag="SERP0069"
/note="active site"
/db_xref="CDD:238223"
gene 58718..60259
/gene="guaA"
/locus_tag="SERP0070"
/db_xref="GeneID:3241656"
CDS 58718..60259
/gene="guaA"
/locus_tag="SERP0070"
/EC_number="6.3.5.2"
/function="converts ATP and xanthosine 5'-phosphate and
L-glutamine and water to AMP and pyrophosphate diphosphate
and GMP and L-glutamate"
/note="contains glutamine-hydrolyzing domain and glutamine
amidotransferase; GMP-binding domain; functions to produce
GMP from XMP in the IMP pathway"
/codon_start=1
/transl_table=11
/product="GMP synthase"
/protein_id="YP_187668.1"
/db_xref="GI:57866023"
/db_xref="GeneID:3241656"
/translation="MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIE
EIKRMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVER
ANEREYGKATINAKSDELFFGLPSEQTVWMSHSDKVIEIPEGFEVIADSPSTNYAAIE
DKKRRIYGVQFHPEVRHTEYGNDLLRNFVRRVCNCTGEWTMENFIEIEIEKIRQQVGN
RKVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFDMNI
IRVNAQERFMSKLKGVSDPERKRKIIGNEFVYVFDDEAAKLTDVDFLAQGTLYTDVIE
SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELGIPEHLVWRQPFP
GPGLGIRVLGEITEDKLEIVRESDAILREVIREEGLERDIWQYFTVLPGIQSVGVMGD
YRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPS
TIEWE"
misc_feature 58736..60256
/gene="guaA"
/locus_tag="SERP0070"
/note="GMP synthase; Reviewed; Region: guaA; PRK00074"
/db_xref="CDD:234614"
misc_feature 58745..59284
/gene="guaA"
/locus_tag="SERP0070"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in GMP synthetase; Region: GATase1_GMP_Synthase;
cd01742"
/db_xref="CDD:153213"
misc_feature order(58766..58771,58889..58897,58973..58978,59114..59116,
59231..59233)
/gene="guaA"
/locus_tag="SERP0070"
/note="AMP/PPi binding site [chemical binding]; other
site"
/db_xref="CDD:153213"
misc_feature order(58892..58894,58976..58978)
/gene="guaA"
/locus_tag="SERP0070"
/note="candidate oxyanion hole; other site"
/db_xref="CDD:153213"
misc_feature order(58973..58975,59231..59233,59237..59239)
/gene="guaA"
/locus_tag="SERP0070"
/note="catalytic triad [active]"
/db_xref="CDD:153213"
misc_feature order(58985..58987,59117..59119,59225..59227)
/gene="guaA"
/locus_tag="SERP0070"
/note="potential glutamine specificity residues [chemical
binding]; other site"
/db_xref="CDD:153213"
misc_feature 59375..60253
/gene="guaA"
/locus_tag="SERP0070"
/note="The C-terminal domain of GMP synthetase. It
contains two subdomains; the ATP pyrophosphatase domain
which closes to the N-termial and the dimerization domain
at C-terminal end. The ATP-PPase is a twisted,
five-stranded parallel beta-sheet sandwiched...; Region:
GMP_synthase_C; cd01997"
/db_xref="CDD:238955"
misc_feature order(59375..59449,59453..59485,59489..59521,59552..59665,
59681..59728,59747..59776,59789..59863,59879..59923)
/gene="guaA"
/locus_tag="SERP0070"
/note="ATP Binding subdomain [chemical binding]; other
site"
/db_xref="CDD:238955"
misc_feature order(59387..59395,59399..59410,59462..59464,59468..59470,
59822..59824)
/gene="guaA"
/locus_tag="SERP0070"
/note="Ligand Binding sites [chemical binding]; other
site"
/db_xref="CDD:238955"
misc_feature order(59948..59986,60011..60040,60047..60079,60089..60136,
60155..60181,60185..60253)
/gene="guaA"
/locus_tag="SERP0070"
/note="Dimerization subdomain; other site"
/db_xref="CDD:238955"
gene complement(60500..61405)
/locus_tag="SERP0071"
/db_xref="GeneID:3242673"
CDS complement(60500..61405)
/locus_tag="SERP0071"
/note="identified by similarity to OMNI:SA0440"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187669.1"
/db_xref="GI:57866032"
/db_xref="GeneID:3242673"
/translation="MSSTRKPKLDYEEQIKKLKSLGILFNEITEEEAKEILKNNTYFF
KLISFRKNIKKDSSGNYNFEFSALSDFATLDMRLRYTLLPMCLDIEHSLKTDILKKIT
DDVNEDGYTIVQDFINNHNGDLEKIFSSVIKRDGTVIPSFQKYYDDPPIWVCLELMTF
GQFSAFVEFYSERTNDSELRKAGKFIKFAKNIRNKCAHSQPILLNLNPRKNFTVEREL
KKIGRKQRLSDKNLKVLAIIDILALLVLHSKYCSKGIKDNRKNDLLTFKQRKNRYFHH
YRNVPSLSFFFLSLNKMIDYYVQNN"
misc_feature complement(60797..61306)
/locus_tag="SERP0071"
/note="Abi-like protein; Region: Abi_2; pfam07751"
/db_xref="CDD:219553"
gene complement(61408..62586)
/locus_tag="SERP0072"
/note="pathogenicity island protein, integrase,
degenerate; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to GP:2689564"
/pseudo
/db_xref="GeneID:3242561"
gene complement(62664..63218)
/locus_tag="SERP0073"
/db_xref="GeneID:3242562"
CDS complement(62664..63218)
/locus_tag="SERP0073"
/note="identified by similarity to GP:14247774"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187670.1"
/db_xref="GI:57866033"
/db_xref="GeneID:3242562"
/translation="MKRLLGTLIAATLVLSACSQNDTKEDENKKSENTTEKKSDDKKD
KKTNEDKKSGEQKKSQEKKNNKSMQESATNEQVQSQQQTNNNQQQYSDEYLANNSVSN
DDQLSSEEQQKYNENTNENKQNSHVDLNSLPATDFRTDWMSESGQKQVNDLANQKDSG
QISQYEFNDRVSDVMNNEIDNQQP"
gene complement(63328..63945)
/locus_tag="SERP0074"
/db_xref="GeneID:3242563"
CDS complement(63328..63945)
/locus_tag="SERP0074"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187671.1"
/db_xref="GI:57866034"
/db_xref="GeneID:3242563"
/translation="MEEKFNNSQEERQFQQFQEYQKRQEEEKKKKRKKGWLFGCGGCL
VLLILIIVGVTACTGTFVNEVDKEINEEGKLDKDKDTKIKSIGETTEIDGVSFTLDNA
SYTEERNEFADVQADKVIKVDMTVKNNSKEEIPVGGDIKVYVDGKQAKSYPIDNQLID
SLSPNREISGSEGFAINGNPKKIELEFQPLTSFSNKRYIYNIKPE"
misc_feature complement(63379..63693)
/locus_tag="SERP0074"
/note="Domain of unknown function (DUF4352); Region:
DUF4352; pfam11611"
/db_xref="CDD:221149"
gene complement(64144..64260)
/locus_tag="SERP0075"
/db_xref="GeneID:3242564"
CDS complement(64144..64260)
/locus_tag="SERP0075"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187672.1"
/db_xref="GI:57866035"
/db_xref="GeneID:3242564"
/translation="MITEIITSIFNSILKQEEIYLNNNIEQLSEFRKDIILK"
gene 64836..64967
/locus_tag="SERP0076"
/db_xref="GeneID:3242565"
CDS 64836..64967
/locus_tag="SERP0076"
/note="identified by similarity to OMNI:SA0071"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187673.1"
/db_xref="GI:57866036"
/db_xref="GeneID:3242565"
/translation="MNITHFRFLIGEGNKPFDVLNDSQFMEELANTNLALKKGDIYD"
gene complement(64980..65096)
/locus_tag="SERP0077"
/db_xref="GeneID:3242566"
CDS complement(64980..65096)
/locus_tag="SERP0077"
/note="identified by similarity to GP:8918792"
/codon_start=1
/transl_table=11
/product="transposase, truncation"
/protein_id="YP_187674.1"
/db_xref="GI:57866037"
/db_xref="GeneID:3242566"
/translation="METFIRIPQINPPRHINEMIETIHNRDFDEFSSLKRTI"
gene 65272..66300
/gene="pfoR"
/locus_tag="SERP0078"
/db_xref="GeneID:3242567"
CDS 65272..66300
/gene="pfoR"
/locus_tag="SERP0078"
/note="identified by similarity to EGAD:33437"
/codon_start=1
/transl_table=11
/product="perfringolysin O regulator protein"
/protein_id="YP_187675.1"
/db_xref="GI:57866038"
/db_xref="GeneID:3242567"
/translation="MDLLIGTLFLILVLVIFTLFTYKAPSGMRAMGALANAAIASFLV
EAFNKYVGGQVFGIKFLEELGDAAGGLGGVAAAGLTALAIGVSPVYALVIGAACGGMD
LLPGFFAGYIVGYMMKYTEKYVPDGIDLIGSIILLAPIARLIATGLTPVVNNTLIKIG
DIIQSSTDANPLIMGIVLGGIITVVGTAPLSSMALTALLGLTGAPMAIGAMAAFSSAF
MNSALFHRLKLGDRKSTISVGIEPLSQADIVSANPIPIYVTNFFGGAIAGIIIAWSGM
INNATGTATPIAGFLVMFGFNSLTKVIIYGVVMAIIGTIAGIVGSIVFKKYPIITKKQ
MLERDTTT"
misc_feature 65353..66276
/gene="pfoR"
/locus_tag="SERP0078"
/note="Phosphotransferase system, EIIC; Region:
PTS_EIIC_2; pfam13303"
/db_xref="CDD:222035"
misc_feature 65362..66276
/gene="pfoR"
/locus_tag="SERP0078"
/note="Phosphotransferase system, fructose-specific IIC
component [Carbohydrate transport and metabolism]; Region:
FruA; cl17425"
/db_xref="CDD:247979"
gene 66815..67198
/locus_tag="SERP0079"
/db_xref="GeneID:3241767"
CDS 66815..67198
/locus_tag="SERP0079"
/note="identified by similarity to OMNI:NTL03PA01359;
match to protein family HMM PF00903"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187676.1"
/db_xref="GI:57866047"
/db_xref="GeneID:3241767"
/translation="MKNVSPFIYVKDVDKSLCYYKDVFNAQTEILMGKDGRTYHAQLI
IGDETFVHFSDTFHKHPVSKNPHLIIECDSLEELERVYKRLIDDGGHAKVKLNKTFFN
AYHAEVKDRLNGIIWVFNYFLDEHI"
misc_feature 66824..67174
/locus_tag="SERP0079"
/note="Escherichia coli PhnB and similar proteins; the E.
coli phnB gene is found next to an operon involved in the
cleavage of carbon-phosphorus bonds in unactivated
alkylphosphonates; Region: PhnB_like; cd06588"
/db_xref="CDD:176658"
misc_feature order(66824..66841,66884..66886,66953..66958,66968..66970,
67013..67027,67031..67033,67043..67045,67133..67135,
67166..67168)
/locus_tag="SERP0079"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176658"
misc_feature 66836..67171
/locus_tag="SERP0079"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:216182"
gene 67369..68571
/locus_tag="SERP0080"
/db_xref="GeneID:3241768"
CDS 67369..68571
/locus_tag="SERP0080"
/note="identified by match to protein family HMM PF02492"
/codon_start=1
/transl_table=11
/product="cobalamin synthesis protein"
/protein_id="YP_187677.1"
/db_xref="GI:57866048"
/db_xref="GeneID:3241768"
/translation="MAKIPVTVLSGYLGSGKTTLLNHILKNREGRRIAVIVNDMSEVN
IDKDLVAQGGGLSRTDEKLVELSNGCICCTLRDDLLREVERLVHKGGIDQIVIESTGI
SEPVPVAQTFSYIDEELGIDLTSICRLDTMVTVVDANRFVNDIRSEDLLADRDESVDD
EDERTIADLLIDQVEFCDVMIINKIDLISDEALEKLENVLRALQPEAKIIKTVNAKVE
LSDVLNTQLFDFEKASESAGWIKELTAGGHATHTPETEEYGITSFAYTRRLPFHAKRF
HQWLEQMPENIVRTKGIVWLAQYNDVACLLSQAGSSCNIHPVTYWVATMSESQQQAIL
EARQDVVEDWDIEYGDRQTQFVIIGTDLDQEKISRELDACLIHSSEIDEDWRLLDSPY
QWTYDRRM"
misc_feature 67378..68493
/locus_tag="SERP0080"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:30869"
misc_feature 67381..68001
/locus_tag="SERP0080"
/note="CobW/HypB/UreG, nucleotide-binding domain; Region:
cobW; pfam02492"
/db_xref="CDD:202255"
misc_feature 68146..68493
/locus_tag="SERP0080"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; smart00833"
/db_xref="CDD:197902"
gene complement(68810..69073)
/locus_tag="SERP0081"
/db_xref="GeneID:3241769"
CDS complement(68810..69073)
/locus_tag="SERP0081"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187678.1"
/db_xref="GI:57866049"
/db_xref="GeneID:3241769"
/translation="MKKCSISSLLSIIVTLISIFICFTTMFTNIYNNTDFNFWYFPGA
IIFVISIIINIIAMFKGNKTLNIILFFINFFALLIFTTPFAIV"
gene 69325..69438
/locus_tag="SERP0082"
/db_xref="GeneID:3241770"
CDS 69325..69438
/locus_tag="SERP0082"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187679.1"
/db_xref="GI:57866050"
/db_xref="GeneID:3241770"
/translation="MNFLTMSTIVLTTSMIVDTMLMFMTSFQKGNVFRDGC"
misc_feature complement(69480..69548)
/note="similar to phenol soluble modulin alpha; identified
by similarity to GP:3212077"
gene 70144..71640
/gene="nuoF"
/locus_tag="SERP0084"
/db_xref="GeneID:3242418"
CDS 70144..71640
/gene="nuoF"
/locus_tag="SERP0084"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
ubiquinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit 5"
/protein_id="YP_187681.1"
/db_xref="GI:57866051"
/db_xref="GeneID:3242418"
/translation="MLSSELILFMFFITLVIAILSGLIFLNHRVPIQYIKFHIYLLVL
PIITGLSGLIFFGERANVGPFVVDHLTWLMMTFILTLGFIIQKFSMRYLIGDMHYRKY
FPFFTLITAFASLAWLSGDLRLMTMFWGATLFVLTRLIKVNKLWKVPREAARISAWSF
ILAWLSLLIAVILLYIATGDWYIYSNMSDDNAINYGMRLCINLLIVLAVIIPAAQFPF
QGWLIESVAAPTPVSAIMHAGIVNAGGVILTRFSPVFNDEIAISLLLIIASISVLLGS
GISLVHVDYKRQLVGSTISQMGFMLVQCALGAYSAAIVHLILHGVFKATLFLQSGSVV
KRFNIPTPPSVKKSYGWLVFGRLLAILIAIIFWLNSDRHAYDVLSALILAWSLMVSWN
QLVAFSHGLIGRVIGVCMIIVVVIVYIITHHYFFTTLSNVDIHIVSPPLISIILSIAI
IVFGSMLSIWVSRRRESKAFAKLYLWLIKVGEAKTQSIESHPSYLKRF"
misc_feature 70144..71637
/gene="nuoF"
/locus_tag="SERP0084"
/note="NADH dehydrogenase subunit 5; Validated; Region:
PRK08601"
/db_xref="CDD:236310"
misc_feature 70498..71157
/gene="nuoF"
/locus_tag="SERP0084"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 71658..74225
/locus_tag="SERP0085"
/db_xref="GeneID:3242419"
CDS 71658..74225
/locus_tag="SERP0085"
/note="identified by similarity to OMNI:NTL01SA0430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187682.1"
/db_xref="GI:57866052"
/db_xref="GeneID:3242419"
/translation="MLQSDINELVNQAKRVITPLSPISTFAARNPWEGLEDASFDQVA
RWLKSVRDVDIYPNASTIHRAISNKEIDLKVFEERLDENRAHYNNRSLSDSDINTYIQ
RAKNLKTIEEGYFNTKDNEKLEKWVQTNFKDYKKKEDVIAQSASVFTKEGTRLIDILN
AHMIKWSKLYVDDFQSSWTMPKREKGFYHAWQRLVKHDPLFTKKQRLTLAHLPNQATE
AIEYAFQELGVKEEHRQSYIESHLLSLPGWAGIMYHRSQTQSNDAYLLTDYVAIRLSI
EMVLLNDHHTTLLKKSIYLQKKLEQIRYLLFNIQMNVEQWLNLSSKKQQAYIELGTRF
SPFYFKKLWLDAWEETHERRLVDEIYRVPTEDTDQAKAKVQLAFCIDVRSEPFRRHLE
SEGPFETIGIAGFFGLPIQKEVLDEQFAHPSLPVMVEPAYRIKEYADQHEMKIYNQQQ
HTLTSMFYNFKLMKNNVLPSLLLPELSGPFLSIATIANTIFPKKAKRIVHRFSQKWLR
KPTGKLTIQREQDAYSKLPIGFTLEEQIQFSKKALQLMDLTDDFAPLIVLCGHGSESH
NNPYHASLECGACGGASSGFNAKLLAVMCNQENVRRGLLMEGIDIPRHTVFIAAEHQT
SVDELEYIYVPPLTTEAQNAFDELKHVMPKVCYKANLERLASLPNINNTDHNPNAEAH
RHASDWSEVRPEWGLARNAEFIIGKRQITQNSNLEGRAFLHNYDWTKDEDGEILNTII
SGPALVAQWINLQYYASTVAPHYYGSGSKTTQTVTSGVGVMQGNASDLMYGLPWQSVM
MNDKEAYHAPIRLLIVIQAPDAYIQRLLKHHNHFRQKVDHQWIRLASIDENNSWKDW"
misc_feature 71664..74222
/locus_tag="SERP0085"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3002"
/db_xref="CDD:225548"
misc_feature 71682..74180
/locus_tag="SERP0085"
/note="Uncharacterized protein conserved in bacteria
(DUF2309); Region: DUF2309; pfam10070"
/db_xref="CDD:220550"
gene 74236..74313
/locus_tag="SERP0086"
/db_xref="GeneID:3242420"
CDS 74236..74313
/locus_tag="SERP0086"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187683.1"
/db_xref="GI:57866053"
/db_xref="GeneID:3242420"
/translation="MRLTIKDSLEEIKFFDYFSLMLNYK"
gene 74338..74706
/locus_tag="SERP0087"
/db_xref="GeneID:3242421"
CDS 74338..74706
/locus_tag="SERP0087"
/note="identified by similarity to OMNI:NTL01SA0431"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187684.1"
/db_xref="GI:57866054"
/db_xref="GeneID:3242421"
/translation="MKKTKGIYESEISKAITQWEKDFLGRGSLSVKTDILRDMVIVSL
QGILTPAEYRVCKTNEGLLNIKRTRSELVESGEEDLSRIIKDLTGLNVKSFHSDLSTI
TGERVMIFKLEDRFDKALHE"
misc_feature 74338..74691
/locus_tag="SERP0087"
/note="Uncharacterized conserved protein (DUF2294);
Region: DUF2294; pfam10057"
/db_xref="CDD:220544"
gene complement(74748..74996)
/locus_tag="SERP0088"
/db_xref="GeneID:3242422"
CDS complement(74748..74996)
/locus_tag="SERP0088"
/note="identified by similarity to OMNI:SA0497"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187685.1"
/db_xref="GI:57866055"
/db_xref="GeneID:3242422"
/translation="MFTKKILIYIALLITLIRFFIPLHPDFDTLLVWLFILYIIPIIL
CIIGFKSDKLIATMIMIPNLMGIGYRLFIFFNDFLHLK"
gene 75248..75919
/locus_tag="SERP0089"
/db_xref="GeneID:3240896"
CDS 75248..75919
/locus_tag="SERP0089"
/note="identified by match to protein family HMM PF01569"
/codon_start=1
/transl_table=11
/product="PAP2 family protein"
/protein_id="YP_187686.1"
/db_xref="GI:57866064"
/db_xref="GeneID:3240896"
/translation="MNFKYMNIAKGIIPILISMIILLSFISTHVLAQNQWLRMVDLSV
QEWFSNQFGDPNRVFGHGFINNIMTFCATFGDVKIILIVATIIAVLLTFYKKVPQAIW
LIITMTSGALINYLIKQTIERSRPENHLIVDTGWSFPSGHSNINTLFFLMIMIIIIPL
IRQRAFKFIITILSIAFWISVLISRLYFHAHYFSDVVGGVSLAIIWVSLFILVSPLLK
FGGEK"
misc_feature 75335..75898
/locus_tag="SERP0089"
/note="PAP2_like_2 proteins. PAP2 is a super-family of
phosphatases and haloperoxidases. This subgroup, which is
specific to bacteria, lacks functional characterization
and may act as a membrane-associated lipid phosphatase;
Region: PAP2_like_2; cd03392"
/db_xref="CDD:48096"
misc_feature <75524..75904
/locus_tag="SERP0089"
/note="Membrane-associated phospholipid phosphatase [Lipid
metabolism]; Region: PgpB; COG0671"
/db_xref="CDD:31015"
misc_feature order(75599..75601,75620..75622,75665..75673,75800..75802,
75818..75820,75830..75832)
/locus_tag="SERP0089"
/note="active site"
/db_xref="CDD:48096"
gene 76026..76754
/locus_tag="SERP0090"
/db_xref="GeneID:3240897"
CDS 76026..76754
/locus_tag="SERP0090"
/note="identified by similarity to EGAD:18058"
/codon_start=1
/transl_table=11
/product="carboxylesterase"
/protein_id="YP_187687.1"
/db_xref="GI:57866065"
/db_xref="GeneID:3240897"
/translation="MKVKSPQSIYLKGHRQQAVLLLHSFTGTVRDVKHLAQQLNEEGF
TCYVPSYPGHGLPLKEFTQHNINDWWEQVTAAYQFLRNAGYSRINVTGVSLGGLFTLR
LAEHFDLERIAVMSAPHKKRESEIAWRLERYGHRMNEILSLSEEERRHQMETILSYDK
EIEVFQGVIDEIMAYLANITVPVNIMYGEEDDPLYAQSAQYIYDNVNSQDKELLKFEK
SGHLMTYGDHAYRVEQSIIQFFSK"
misc_feature 76026..76751
/locus_tag="SERP0090"
/note="Esterase/lipase [General function prediction only];
Region: COG1647"
/db_xref="CDD:224561"
misc_feature <76206..>76400
/locus_tag="SERP0090"
/note="Adenylate forming domain, Class I; Region:
AFD_class_I; cl17068"
/db_xref="CDD:247692"
gene 76769..77011
/locus_tag="SERP0091"
/db_xref="GeneID:3240898"
CDS 76769..77011
/locus_tag="SERP0091"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187688.1"
/db_xref="GI:57866066"
/db_xref="GeneID:3240898"
/translation="MKRTFLLTYTTVSGKTYTEFKTFENGPDYDTCVSRIIDEFDELA
YLYIKKDVVHYINVDHIESLDIEEVTEGQHITYDFE"
gene 77156..78484
/locus_tag="SERP0092"
/db_xref="GeneID:3240899"
CDS 77156..78484
/locus_tag="SERP0092"
/note="identified by match to protein family HMM PF00209"
/codon_start=1
/transl_table=11
/product="sodium-dependent transporter"
/protein_id="YP_187689.1"
/db_xref="GI:57866067"
/db_xref="GeneID:3240899"
/translation="MSGHSQWKTSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLL
MFLIFTIFVGLPLLIMEFTVGKMGRTYTTQIYKKLTGKKWLNIIGWNGNLAVFILFGF
YSVIGGWIIIYIGYVIAQIMVFKSSTLTNIQFETIISNPWLTVLGQGIFILITMVIVM
LGVEKGLEKASKIMMPLLFIFLIIVVAQSLTLEGALEGVRYILQPRVEDMSIQGVLFA
LGQSFFTLSLGTTGMITYASYAPKNMTIKSSALSIVVMNILISVLAGLAIFPALKTFG
YQPQEGPGLLFKVLPLVFSEMTFGTFFYFIFLLLFLFAALTSSISLLELNVSNFTKND
NSKRQKVAIIGSILVFIISIPATLSFSSLSHLRFGAGTIFDNMDFIVSNILMPLGALG
TTLVVGQLLDKKLLKESFGKDKFNLFLPWYYLIKFIMPIVIILVFIVQLF"
misc_feature 77168..78445
/locus_tag="SERP0092"
/note="solute carrier 6 subfamily, Fusobacterium nucleatum
Tyt1-like; solute-binding domain; Region:
SLC6sbd_Tyt1-Like; cd10336"
/db_xref="CDD:212043"
misc_feature order(77210..77212,77219..77221,78095..78097,78104..78109)
/locus_tag="SERP0092"
/note="Na2 binding site [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature order(77213..77218,77222..77233,77462..77464,77825..77830,
77843..77845,77849..77851,78107..78109,78116..78121)
/locus_tag="SERP0092"
/note="putative substrate binding site 1 [chemical
binding]; other site"
/db_xref="CDD:212043"
misc_feature order(77216..77218,77231..77233,77828..77830,77924..77926)
/locus_tag="SERP0092"
/note="Na binding site 1 [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature order(77237..77242,77459..77461,77471..77473,77480..77482,
78002..78004,78014..78016)
/locus_tag="SERP0092"
/note="putative substrate binding site 2 [chemical
binding]; other site"
/db_xref="CDD:212043"
gene complement(78663..79202)
/locus_tag="SERP0093"
/db_xref="GeneID:3240900"
CDS complement(78663..79202)
/locus_tag="SERP0093"
/note="identified by similarity to EGAD:162731"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187690.1"
/db_xref="GI:57866068"
/db_xref="GeneID:3240900"
/translation="MTKQDLSLSVFTNENYKNLRYTSSSFRNSMYDELEVNKSRFKNC
NFNEGIFKNIEAICNCKFTTCGFNNCIFEDVHFYKNQFKDSTFVNTPFDQSVFNSTLF
QNAMFDSNLIRSVKWTDIIFKNVSFKNVEIEGTTFKDVKFKNCEFKNVIITNSTMSQK
LMNELQKQDVTLENIDTSI"
misc_feature complement(78942..79190)
/locus_tag="SERP0093"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(78813..79025)
/locus_tag="SERP0093"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(78675..78869)
/locus_tag="SERP0093"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
gene 79505..80413
/locus_tag="SERP0094"
/db_xref="GeneID:3240901"
CDS 79505..80413
/locus_tag="SERP0094"
/note="identified by match to protein family HMM PF00291"
/codon_start=1
/transl_table=11
/product="cysteine synthase/cystathionine beta-synthase
family protein"
/protein_id="YP_187691.1"
/db_xref="GI:57866069"
/db_xref="GeneID:3240901"
/translation="MIAYDLIGQTPLVLLESFSDENVKIYAKLEQFNPGGSIKDRLGK
YLIEKAIDEGRLKEGDTIVEATAGNTGIGLAIASNRHKVKCIIFAPEGFAEEKISIMK
ALGADVRRTPKAEGMTGAQQEALAYATRYGYLYMNQFETKDNPGAYTQTLAKQLTDEL
SHIDYFVAGVGSGGTFTGVAQHLKTYDVKNYIVEPEGSVLNGGVSHPHATEGIGSEKW
PSFLEKELVDGIFTVADKDAFNNVKLVANKEGLLVGSSSGAALQGALELKKSIQNGVI
VTIFPDGSDRYMSKQIFNYKESFNNE"
misc_feature 79517..80374
/locus_tag="SERP0094"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:223110"
misc_feature 79526..80371
/locus_tag="SERP0094"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature order(79538..79546,79580..79582,79598..79600,79604..79606,
79730..79732,79739..79741,79787..79792,79799..79804,
79811..79816,79976..79981,80240..80248,80252..80260,
80327..80329,80357..80359,80366..80368)
/locus_tag="SERP0094"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature order(79619..79621,79709..79711,80012..80029,80138..80140,
80270..80272,80345..80350)
/locus_tag="SERP0094"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature 79619..79621
/locus_tag="SERP0094"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene 80406..81551
/locus_tag="SERP0095"
/db_xref="GeneID:3240902"
CDS 80406..81551
/locus_tag="SERP0095"
/note="identified by match to protein family HMM PF01053"
/codon_start=1
/transl_table=11
/product="trans-sulfuration enzyme family protein"
/protein_id="YP_187692.1"
/db_xref="GI:57866070"
/db_xref="GeneID:3240902"
/translation="MNKKTQMIHGGHTTDNYTGAVTTPIYQTSTYLQDDIGDLRQGYE
YSRTANPTRASLESVIANLEHGKHGFAFGSGMAAISAVIMLLDKGDHLVLNSDVYGGT
YRALTKVFTRFGIDVDFVDTTKIENIEQYIKPETKMLYVETPSNPLLRVTDIKASAKI
AKKYDLISVVDNTFMTPYYQNPLDFGIDIVLHSATKYIGGHSDVVAGLVATADDDLAE
RLGFISNSTGGVLGPQDSYLLIRGIKTLGLRMEQINRNVEGIVQMLQKHPKVQQVFHP
SIKEHMNYTIHQNQATGHTGVVSFEVKDTEAAKQVIHATNYFTLAESLGAVESLISVP
ALMTHASIPSDVRAKEGITDGLIRLSIGIEDTEDLVNDLEQALNTLR"
misc_feature 80406..81539
/locus_tag="SERP0095"
/note="cystathionine beta-lyase; Provisional; Region:
PRK07671"
/db_xref="CDD:181076"
misc_feature 80460..81539
/locus_tag="SERP0095"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature order(80484..80495,80499..80504,80538..80540,80544..80546,
80622..80627,80631..80636,80700..80702,80715..80717,
80724..80726,80988..80990,81012..81014,81018..81020,
81069..81071,81099..81101,81105..81110,81342..81344)
/locus_tag="SERP0095"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature order(80625..80633,80700..80702,80829..80831,80916..80918,
80982..80984,80988..80993,81018..81020)
/locus_tag="SERP0095"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature order(80625..80633,80700..80702,80916..80918,80925..80927,
80982..80984,80988..80993)
/locus_tag="SERP0095"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature 80991..80993
/locus_tag="SERP0095"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
gene 81701..81805
/locus_tag="SERP0096"
/db_xref="GeneID:3240903"
CDS 81701..81805
/locus_tag="SERP0096"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187693.1"
/db_xref="GI:57866071"
/db_xref="GeneID:3240903"
/translation="MEKSKKIVDGTTSIQYNANIQIILIGNWRERLGD"
gene 81798..82823
/locus_tag="SERP0097"
/db_xref="GeneID:3240538"
CDS 81798..82823
/locus_tag="SERP0097"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187694.1"
/db_xref="GI:57866079"
/db_xref="GeneID:3240538"
/translation="MIEFKNVNKVFRKKRETIQALKNVSFKIDQHDIFGVIGYSGAGK
STLVRLVNQLETVSDGQVIVDGHEIDTYKEKDLRDIKKDIGMIFQHFNLLNSKSVYKN
VAMPLILSKTNKKEIKEKVDEMLEFVGLADKKDQFPDELSGGQKQRVAIARALVTHPK
ILLCDEATSALDPATTSSILNLLSNVNRTFGVTIMMITHEMSVIQKICHRVAVMENGE
VIEMGTVKDVFSHPQTNTAKNFVSTVINTEPSKELRASFNSRKDSNFTDYKLFLDSEQ
IQLPILNELINEHHLNVNVLFSSMSEIQDETVCYLWLRFEHDESFNDFKLTDYLSKRH
IRYEEVI"
misc_feature 81798..82814
/locus_tag="SERP0097"
/note="ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism];
Region: AbcC; COG1135"
/db_xref="CDD:224058"
misc_feature 81798..82496
/locus_tag="SERP0097"
/note="ATP-binding cassette domain of methionine
transporter; Region: ABC_MetN_methionine_transporter;
cd03258"
/db_xref="CDD:213225"
misc_feature 81909..81932
/locus_tag="SERP0097"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213225"
misc_feature order(81918..81923,81927..81935,82062..82064,82290..82295,
82392..82394)
/locus_tag="SERP0097"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213225"
misc_feature 82053..82064
/locus_tag="SERP0097"
/note="Q-loop/lid; other site"
/db_xref="CDD:213225"
misc_feature 82218..82247
/locus_tag="SERP0097"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213225"
misc_feature 82278..82295
/locus_tag="SERP0097"
/note="Walker B; other site"
/db_xref="CDD:213225"
misc_feature 82302..82313
/locus_tag="SERP0097"
/note="D-loop; other site"
/db_xref="CDD:213225"
misc_feature 82380..82400
/locus_tag="SERP0097"
/note="H-loop/switch region; other site"
/db_xref="CDD:213225"
misc_feature 82587..82817
/locus_tag="SERP0097"
/note="This domain is found at the C-terminus of ABC
transporter proteins involved in D-methionine transport as
well as a number of ferredoxin-like proteins; Region: NIL;
smart00930"
/db_xref="CDD:197998"
gene 82826..83485
/locus_tag="SERP0098"
/db_xref="GeneID:3240539"
CDS 82826..83485
/locus_tag="SERP0098"
/note="identified by match to protein family HMM PF00528"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_187695.1"
/db_xref="GI:57866080"
/db_xref="GeneID:3240539"
/translation="MFGSSLDSSQLLQALYETLYMVTVSLVIGALIGIPLGILLVVTR
KNGIWSNTILHQVLNPIINILRSIPFIILLIAIVPFTKLLVGTSIGTTAAIVPLTVYV
APYIARLVENSLLEVDDGIIEAAKAMGASPLQIIRYFLLPEALGSLILAITTAIIGLI
GSTAMAGAVGGGGIGDLALVYGYQRFDTIVIVITVIVLIIIVQIIQTLGNFIARVIRR
N"
misc_feature 82970..>83251
/locus_tag="SERP0098"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(82997..83008,83012..83041,83048..83053,83057..83059,
83123..83128,83132..83134,83138..83140,83147..83152,
83156..83158,83168..83173,83180..83182,83231..83233)
/locus_tag="SERP0098"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature 83015..83059
/locus_tag="SERP0098"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(83183..83221,83237..83242)
/locus_tag="SERP0098"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 83529..84374
/locus_tag="SERP0099"
/db_xref="GeneID:3240540"
CDS 83529..84374
/locus_tag="SERP0099"
/note="identified by match to protein family HMM PF03180"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_187696.1"
/db_xref="GI:57866081"
/db_xref="GeneID:3240540"
/translation="MKKILSFLIVAILVLSACGGNNGKKVTIGVASNDTKAWEKVKEL
AKKDDIDLEIKHFSDYNVPNKALSDGDIDLNAFQHFAFLDQYKKAHKDTNIEALSTTV
LAPLGIYSDKVKNIKDVKKGAQVAIPNDVSNQARALKLLESAGLIKLKKNFGLNGTTK
DIESNPKDLKIKAVDAQQTARALSDVDISVINNGVATKAGKDAKKDPIYLEKASSDAV
KPYINVVAVNSKDKDNKTYKKIIELYHSKEAQKALKEDTKDGEKPVDLSKKEIEEIEN
ELAKK"
misc_feature 83529..84323
/locus_tag="SERP0099"
/note="ABC-type metal ion transport system, periplasmic
component/surface antigen [Inorganic ion transport and
metabolism]; Region: NlpA; COG1464"
/db_xref="CDD:224381"
misc_feature 83604..84320
/locus_tag="SERP0099"
/note="NLPA lipoprotein; Region: Lipoprotein_9; pfam03180"
/db_xref="CDD:146017"
gene 84899..85873
/locus_tag="SERP0100"
/db_xref="GeneID:3241005"
CDS 84899..85873
/locus_tag="SERP0100"
/note="identified by match to protein family HMM PF01476;
match to protein family HMM PF05257"
/codon_start=1
/transl_table=11
/product="LysM domain-containing protein"
/protein_id="YP_187697.1"
/db_xref="GI:57866082"
/db_xref="GeneID:3241005"
/translation="MQKKYITAIIGTTALSALASTHAQAATTHTVKSGESVWSISHKY
GISIAKLKSLNGLTSNLIFPNQVLKVSGSSSRATSTNSGTVYTVKAGDSLSSIAAKYG
TTYQKIMQLNGLNNYLIFPGQKLKVSGKATSSSRAKASGSSGRTATYTVKYGDSLSAI
ASKYGTTYQKIMQLNGLTNFFIYPGQKLKVPGGSSSSSSSNNTRSNGGYYSPTFNHQN
LYTWGQCTWHVFNRRAEIGKGISTYWWNANNWDNASAADGYTIDYRPTVGSIAQTDAG
YYGHVAFVERVNSDGSILVSEMNWSAAPGNMTYRTIPAYQVRNYKFIH"
misc_feature 84989..85108
/locus_tag="SERP0100"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 85151..85279
/locus_tag="SERP0100"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 85343..85468
/locus_tag="SERP0100"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature <85538..85870
/locus_tag="SERP0100"
/note="Surface antigen [General function prediction only];
Region: COG3942"
/db_xref="CDD:226451"
misc_feature 85538..85867
/locus_tag="SERP0100"
/note="CHAP domain; Region: CHAP; pfam05257"
/db_xref="CDD:218523"
gene complement(86000..87505)
/locus_tag="SERP0101"
/db_xref="GeneID:3241006"
CDS complement(86000..87505)
/locus_tag="SERP0101"
/note="identified by match to protein family HMM PF00534"
/codon_start=1
/transl_table=11
/product="glycosyl transferase, group 1 family protein"
/protein_id="YP_187698.1"
/db_xref="GI:57866083"
/db_xref="GeneID:3241006"
/translation="MIYTVTTTLPLSHGGRTQALLRRIKLLDEEFKIPSKILTTNYHG
NYPSIYKKYRQENKVTENIQFENMYEWLSNFKLFKVPKTLITRNPKYIKTPRKIKGLI
DKQGKKSGLIHYYNNECHVRSRKYYGQSNVLEYEDFISPTSGLKYERHQYNLYGQLHR
KEYYYDDSSLKHSDELFDTEGSMYCKRYFKTKPNSKINGVEIYRNKKLYKTFKNDKLL
AQFYFQNRFKNQDIVFNDARFLDKPLLKQTHQTKNILVLHSSHLSGDQIKKSYRFALN
QSKNVYKYIVLTHQQKHDIQQHFHISDDQFQLVPHFIELDTEVEQDSSNNQNRFIYIG
RFSTEKQIDHIIRAYHKFLQSGYQTELHLFGRDEDNQIPLMNTLISELKLSDKVKIFK
YTNQPLQEFKNSKASLLTSQYEGFGLTLMESIEMGCPVLSYNVRYGPSEIIQNGINGY
LIEKNDIDSLSKHMINIIEHPLQKVKNKDTLKYNAAVNNYKQLMQSLDLLK"
misc_feature complement(86864..87505)
/locus_tag="SERP0101"
/note="Domain of unknown function (DUF1975); Region:
DUF1975; pfam09318"
/db_xref="CDD:220177"
misc_feature complement(86021..87109)
/locus_tag="SERP0101"
/note="This family is most closely related to the GT1
family of glycosyltransferases and is named after gtfA in
Streptococcus gordonii, where it plays a role in the
O-linked glycosylation of GspB, a cell surface
glycoprotein involved in platelet binding. In...; Region:
GT1_gtfA_like; cd04949"
/db_xref="CDD:99998"
misc_feature complement(86093..87064)
/locus_tag="SERP0101"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
gene complement(87880..88158)
/locus_tag="SERP0102"
/db_xref="GeneID:3241007"
CDS complement(87880..88158)
/locus_tag="SERP0102"
/note="identified by similarity to OMNI:NTL01SA0442"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187699.1"
/db_xref="GI:57866084"
/db_xref="GeneID:3241007"
/translation="MAKQANASRLSRLFNVAGFIVDGYNGIRYNAKNKQLVYLSLGLS
ALGTIIDFYISIKSASKLRKLSALGSFAINGVRLFTSFKKVRDEYDYH"
gene 88346..88732
/locus_tag="SERP0103"
/db_xref="GeneID:3241008"
CDS 88346..88732
/locus_tag="SERP0103"
/note="identified by match to protein family HMM PF00293"
/codon_start=1
/transl_table=11
/product="MutT/nudix family protein"
/protein_id="YP_187700.1"
/db_xref="GI:57866085"
/db_xref="GeneID:3241008"
/translation="MIKCVCLVEEKNHQLLLVQVRHRDKYYFPGGKIDEGESLVEALQ
RELKEELRLELAKDELEFIGTIVGEAYPQPNMLTELNGFKVNRAIDWSKVETDHEITD
MKWFDINDSENIAPAVNTWIKEFIND"
misc_feature 88346..88699
/locus_tag="SERP0103"
/note="Members of the Nudix hydrolase superfamily catalyze
the hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+, for their
activity and contain a highly...; Region:
Nudix_Hydrolase_31; cd04690"
/db_xref="CDD:240046"
misc_feature 88436..88504
/locus_tag="SERP0103"
/note="nudix motif; other site"
/db_xref="CDD:240046"
gene 89012..89131
/locus_tag="SERP0104"
/db_xref="GeneID:3241009"
CDS 89012..89131
/locus_tag="SERP0104"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187701.1"
/db_xref="GI:57866086"
/db_xref="GeneID:3241009"
/translation="MSKLLHRCEKDIFSWVKEFTYTIKYKKEYDEYLLKMQLL"
gene complement(89245..90030)
/locus_tag="SERP0105"
/db_xref="GeneID:3242675"
CDS complement(89245..90030)
/locus_tag="SERP0105"
/note="identified by similarity to OMNI:SA0511"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187702.1"
/db_xref="GI:57866094"
/db_xref="GeneID:3242675"
/translation="MSAITILGFLLLLIMVIFGGKKGLISFFTLFLNFIILVISILLI
IYGVPIYLVTFIFCFIIAAINLFVLNSYNVKTQAAFLGTLVTILILILMIYFSVEMGH
LQGFATEQQDETYVYSMNIGINMVQFMVFTIVLAVIAAVIDLAITISSPMYELNETNP
NLNQHQLFQSGMRVGREILATSANTIYLAFFGGQLTLFFWFFKLKYSFGHIINSKIFT
QEFIAILLGGIAVAISIPITAWITAFMIKHVSQKKTLTNQQNK"
misc_feature complement(89272..>90030)
/locus_tag="SERP0105"
/note="YibE/F-like protein; Region: YibE_F; cl02259"
/db_xref="CDD:242955"
gene complement(90027..91139)
/locus_tag="SERP0106"
/db_xref="GeneID:3242676"
CDS complement(90027..91139)
/locus_tag="SERP0106"
/note="identified by similarity to OMNI:SA0512"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187703.1"
/db_xref="GI:57866095"
/db_xref="GeneID:3242676"
/translation="MQSKNFFKTPFTWMMIIFSCLFLGTLIFTFFNDRFYNMPIGQIT
QITDIQSQKVTDEHKNKDIKYKEKITFKILNGEFKGQTTTIPHQYVKSQADSESFSKN
DKVLLHISKNPKDATIIEKKRDTIVVIITGLFLLTVLVVGKKVGLQSILSLIVNTIAV
MGAILIHDQYGAISLFFLMTCAIIISTSFTLLLVTGWHSRTLITIVSTLIGTFLCVGI
TEVIIKFTGGNGIKYETITFLTLPPKDVFLASVLIGTLGAVMDVSITIASGMYEILKR
SPQISMKRWALAGRHIGQDIMGTMTNILLFSYLSGSLPMFLIYLKNANTITYTISMNW
SLEVARALTGGIGIVLTIPITIALMELWFKLRGVNQ"
misc_feature complement(90030..91139)
/locus_tag="SERP0106"
/note="Predicted multitransmembrane protein [Function
unknown]; Region: COG5438"
/db_xref="CDD:227725"
gene complement(91276..92157)
/locus_tag="SERP0107"
/db_xref="GeneID:3242677"
CDS complement(91276..92157)
/locus_tag="SERP0107"
/note="identified by similarity to EGAD:6257; match to
protein family HMM PF00126"
/codon_start=1
/transl_table=11
/product="GltC family transcriptional regulator"
/protein_id="YP_187704.1"
/db_xref="GI:57866096"
/db_xref="GeneID:3242677"
/translation="MDIKQLRYFVEVARREHISDAALELNIAQSAISRQITQLEKELG
VTLFKRSGRNIILTVEGRQLLSQATQILELMDKTIHSFQQHVSHNQQTIYIGYEESDA
SQMILPLIQTFEQQSNSTMIPQLTKHDKLLDQILSNQLDLAITEFTPVLERETHLRVM
PLFEENYYMYVPKSHPLAMTVHPPLSQFTNQSLYCLEPMTSSIKSKLIEKTKAQVRMI
SDMKLAQHILSHNKGFIISSQNSLLYDHVNWTKIPLNHTELKRMLCVVMRKDNKKNDI
NIAWNLICTLLNKSTIY"
misc_feature complement(<91624..92157)
/locus_tag="SERP0107"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(91972..92151)
/locus_tag="SERP0107"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(91348..91884)
/locus_tag="SERP0107"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature complement(order(91468..91473,91477..91482,91498..91506,
91507..91512,91780..91785,91789..91791,91816..91818,
91825..91830,91834..91839))
/locus_tag="SERP0107"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 92349..96844
/gene="gltB"
/locus_tag="SERP0108"
/note="glutamate synthase, large subunit, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to EGAD:109137"
/pseudo
/db_xref="GeneID:3242678"
gene 96862..98325
/gene="gltD"
/locus_tag="SERP0109"
/db_xref="GeneID:3242679"
CDS 96862..98325
/gene="gltD"
/locus_tag="SERP0109"
/EC_number="1.4.1.13"
/note="glutamate synthase is composed of subunits alpha
and beta; beta subunit is a flavin adenine
dinucleotide-NADPH dependent oxidoreductase; provides
electrons to the alpha subunit, which binds L-glutamine
and 2-oxoglutarate and forms L-glutamate"
/codon_start=1
/transl_table=11
/product="glutamate synthase subunit beta"
/protein_id="YP_187705.1"
/db_xref="GI:57866097"
/db_xref="GeneID:3242679"
/translation="MGEFKGFMKYDKQSLSELSLVDRLSNHEAFQQRFTKEDASIQGA
RCMDCGTPFCQTGQSYGRETIGCPIGNYIPEWNDLVYHQDFKAAYERLRETNNFPEFT
GRVCPAPCEQSCVMKINRESVAIKGIERTIIDEAYENEWVHPAYPEDHKDQRVAIVGS
GPAGLTAAEELNFKGYKVTVYEKAHEPGGLLMYGIPNMKLDKDVIRRRVSLMKDAGVL
FKTGVEIGVDVSRETLEENYDAIILCTGAQNARDLPLEGRMGSGIHFAMDYLTEQTQY
LNGEIESLSITAKDKNVIIIGAGDTGADCVATALRENCKSIVQFNKYTKQPEEITFES
NTSWPLAMPVFKMDYAHKEYEAKFGQEPRAYGVQTMRYDVDELGNVKGLYTQILKETP
DGMVMEDGPERFWPADLVLLSIGFVGTETTVPHAFDIHTERNKIVANDTNYQTNHAKI
FAAGDARRGQSLVVWAIKEGREVAHSVDQYLSKEVLV"
misc_feature 96862..98316
/gene="gltD"
/locus_tag="SERP0109"
/note="glutamate synthase subunit beta; Reviewed; Region:
gltD; PRK12810"
/db_xref="CDD:237213"
misc_feature 97330..>97428
/gene="gltD"
/locus_tag="SERP0109"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
gene 98388..98480
/locus_tag="SERP_tRNA-Ser-1"
/db_xref="GeneID:3241676"
tRNA 98388..98480
/locus_tag="SERP_tRNA-Ser-1"
/product="tRNA-Ser"
/db_xref="GeneID:3241676"
gene complement(98558..99379)
/locus_tag="SERP0110"
/db_xref="GeneID:3242680"
CDS complement(98558..99379)
/locus_tag="SERP0110"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_187706.1"
/db_xref="GI:57866098"
/db_xref="GeneID:3242680"
/translation="MDPYKVLIEVMKTESFTRAAENLYTSQPSVSRDIKRLELKYNVK
IFEFKSPYLKLTRDGEKLLQYALQRESIEQELWQNLTSESEIISGTLTIGSSYTYGEY
LLSEQLTSLMQQYPKLHIHLRVNNSDSVINDIKHNRVDIGIVEKEIQDNAIKCKEIME
DEMVYIYKKSIQPRMDICFVREKGSGTRFYQEVGLSELKLNPYLIEINNIKIIKQMVE
AGNGFAIISKSALHPEDYEKLMITTLNVKRHYYLAQHVDKYIGENIRAVIEMIMK"
misc_feature complement(98567..99367)
/locus_tag="SERP0110"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(99200..99367)
/locus_tag="SERP0110"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(98567..99112)
/locus_tag="SERP0110"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:245600"
misc_feature complement(order(98723..98728,98732..98737,98753..98764,
98768..98773,99008..99028,99032..99034,99044..99046,
99053..99058,99062..99067))
/locus_tag="SERP0110"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 99494..100489
/locus_tag="SERP0111"
/db_xref="GeneID:3242681"
CDS 99494..100489
/locus_tag="SERP0111"
/note="identified by match to protein family HMM PF03601"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187707.1"
/db_xref="GI:57866099"
/db_xref="GeneID:3242681"
/translation="MKSITQASFMKGIMFTFTIAIISYILAKFPILHTIGALAIAIIF
AMIYRQVIGYPEHIRPGITFASKRLLKFAIILYGLKLNMGDILGKGWKLLLIDIIVII
FSISLTLLLNQIIKGNKDISILLGIGTGVCGAAAIAATAPILKSKEKDIAISVGIIAL
VGTIFALIYTAIEAIFNIPTITYGAWTGISLHEIAQVVLAAGIGGSEAMTFALLGKLG
RVFLLIPLSIVLILYMRYKSHSSQVQQKIDIPYFLIGFIIMACINTFVPIPSLLMNII
NVITTLCMLMAMVALGLNIVLKEVISKALKPFIVICITSICLSGVTLLVTSIMFK"
misc_feature 99494..100477
/locus_tag="SERP0111"
/note="Predicted membrane protein [Function unknown];
Region: COG2855"
/db_xref="CDD:225411"
gene 100691..100816
/locus_tag="SERP0112"
/db_xref="GeneID:3241304"
CDS 100691..100816
/locus_tag="SERP0112"
/note="identified by similarity to OMNI:NTL01SA0452"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187708.1"
/db_xref="GI:57866108"
/db_xref="GeneID:3241304"
/translation="MKLDISYSSKSITFKTFPSFNYGIFGDHFTPFTATVRSTVF"
gene 101004..101277
/locus_tag="SERP_SeSRP1"
/db_xref="GeneID:3240467"
misc_RNA 101004..101277
/locus_tag="SERP_SeSRP1"
/product="sRNA"
/db_xref="GeneID:3240467"
gene 101647..102177
/locus_tag="SERP0113"
/db_xref="GeneID:3241305"
CDS 101647..102177
/locus_tag="SERP0113"
/note="identified by match to protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_187709.1"
/db_xref="GI:57866109"
/db_xref="GeneID:3241305"
/translation="MHIYLSTLTEVDYETSLNSIENNYNLNPESSWQDRARVKNLRKL
ESYNYELEVIAKNELNEVIGHVVLAEVKLSSKNKKAIALAIGALSVDKSIRNQGLGQA
LLKAVEERAKEQGYCAIFVNNHPQYFEKSDYEAAHLYNIHIEEKRNHQSLLVKFLKPV
QNEWSGMTVYYPEVLD"
misc_feature 101803..102012
/locus_tag="SERP0113"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(101908..101916,101944..101949)
/locus_tag="SERP0113"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 102244..103950
/gene="dnaX"
/locus_tag="SERP0114"
/db_xref="GeneID:3241306"
CDS 102244..103950
/gene="dnaX"
/locus_tag="SERP0114"
/EC_number="2.7.7.7"
/note="identified by similarity to SP:P09122; match to
protein family HMM PF00004"
/codon_start=1
/transl_table=11
/product="DNA polymerase III, gamma and tau subunits"
/protein_id="YP_187710.1"
/db_xref="GI:57866110"
/db_xref="GeneID:3241306"
/translation="MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFS
GPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVD
EIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH
KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDAL
SIMDQAIAFGDERLTLQDALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGK
EVNRLINDMIYFVRDTIMNKTSNESVHFESLIHFDLDMLYRMIDIINDTLVSIRFSVN
QSVHFEVLLVKLAEMIKTQPQTVQNVATASVANEPDNEMLLQRLEQLENELKTLKEQG
IKTNKVSQQPKKPTRTIQRSKNTFSMQQIAKVLDKANKDDIKLLKNHWQEVIDHAKSN
DKKSLVSLLLNSEPVAASEDHVLVKFDEEIHCEIVNKDDEKRNNIESVVCNIVNKTVK
VVGVPADQWLRVRAEYLQNRNTNETHQSEKQSTQQSQQIDIAQKAKDLFGEETVHLVD
ED"
misc_feature 102244..103941
/gene="dnaX"
/locus_tag="SERP0114"
/note="DNA polymerase III subunits gamma and tau;
Validated; Region: PRK05563"
/db_xref="CDD:235505"
misc_feature 102298..102750
/gene="dnaX"
/locus_tag="SERP0114"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 102376..102399
/gene="dnaX"
/locus_tag="SERP0114"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(102379..102402,102619..102621,102712..102714)
/gene="dnaX"
/locus_tag="SERP0114"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 102607..102624
/gene="dnaX"
/locus_tag="SERP0114"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 102748..102750
/gene="dnaX"
/locus_tag="SERP0114"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 104039..104356
/locus_tag="SERP0115"
/db_xref="GeneID:3241802"
CDS 104039..104356
/locus_tag="SERP0115"
/note="identified by match to protein family HMM PF02575;
match to protein family HMM TIGR00103"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187711.1"
/db_xref="GI:57866111"
/db_xref="GeneID:3241802"
/translation="MRGGGNMQQMMKQMQKMQKKMAQEQEKLKEERVAGTAGGGMVTV
TVTGHKEVVDVEIKEEAVDPEDIEMLQDLVLAATNEAMNKADELTQQRLGKHTQGLNI
PGM"
misc_feature <104183..104353
/locus_tag="SERP0115"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:234669"
gene 104363..104959
/gene="recR"
/locus_tag="SERP0116"
/db_xref="GeneID:3241803"
CDS 104363..104959
/gene="recR"
/locus_tag="SERP0116"
/note="involved in a recombinational process of DNA
repair, independent of the recBC complex"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="YP_187712.1"
/db_xref="GI:57866112"
/db_xref="GeneID:3241803"
/translation="MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVKFA
KALVDVKRELTYCSVCGHITENDPCYICEDKQRDRSVICVVEDDKDVIAMEKMREYKG
LYHVLHGSISPMDGIGPEDINIPALVERLKNDEVKELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM"
misc_feature 104369..104956
/gene="recR"
/locus_tag="SERP0116"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:234616"
misc_feature 104474..104596
/gene="recR"
/locus_tag="SERP0116"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature 104600..104935
/gene="recR"
/locus_tag="SERP0116"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature order(104618..104623,104630..104632,104792..104794,
104798..104800,104804..104806)
/gene="recR"
/locus_tag="SERP0116"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature order(104618..104620,104792..104794)
/gene="recR"
/locus_tag="SERP0116"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature order(104636..104644,104648..104653,104774..104776,
104780..104782,104786..104788,104795..104797,
104831..104833,104861..104896,104900..104902,
104915..104917,104921..104923,104927..104935)
/gene="recR"
/locus_tag="SERP0116"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene 105049..105141
/locus_tag="SERP0117"
/db_xref="GeneID:3241804"
CDS 105049..105141
/locus_tag="SERP0117"
/note="identified by similarity to OMNI:SA1097"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187713.1"
/db_xref="GI:57866113"
/db_xref="GeneID:3241804"
/translation="MNLPNIENFTEKFNRQSKLGFGNGLKQRRI"
gene 105734..107287
/gene="rrsA"
/locus_tag="SERP_Se16SA"
/db_xref="GeneID:3240448"
rRNA 105734..107287
/gene="rrsA"
/locus_tag="SERP_Se16SA"
/product="16S ribosomal RNA"
/db_xref="GeneID:3240448"
gene 107551..110472
/gene="rrlA"
/locus_tag="SERP_Se23SA"
/db_xref="GeneID:3240454"
rRNA 107551..110472
/gene="rrlA"
/locus_tag="SERP_Se23SA"
/product="23S ribosomal RNA"
/db_xref="GeneID:3240454"
gene 110543..110657
/gene="rrfA"
/locus_tag="SERP_Se5SA"
/db_xref="GeneID:3240460"
rRNA 110543..110657
/gene="rrfA"
/locus_tag="SERP_Se5SA"
/product="5S ribosomal RNA"
/db_xref="GeneID:3240460"
gene 111135..111668
/locus_tag="SERP0118"
/db_xref="GeneID:3241805"
CDS 111135..111668
/locus_tag="SERP0118"
/note="identified by match to protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="spermidine N1-acetyltransferase"
/protein_id="YP_187714.1"
/db_xref="GI:57866114"
/db_xref="GeneID:3241805"
/translation="MTLIIRALEKTDLSFIHHLNNEYSIMSYWFEEPYQSLSELENLY
TKHILDETERRFIVEEGSTSVGVVELLEINFIHRTCEVLIIIDPQYANNGYAKKAFKM
AIDYAFLVLNMNKVYLYVDIKNEKAVHIYQSNNFEIEGTLKEHFYTRGEYRDCYVMGL
LKRNWVNKNDDDLSHIR"
misc_feature 111141..111629
/locus_tag="SERP0118"
/note="Acetyltransferases, including N-acetylases of
ribosomal proteins [Translation, ribosomal structure and
biogenesis]; Region: RimL; COG1670"
/db_xref="CDD:31856"
misc_feature <111363..111545
/locus_tag="SERP0118"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:201324"
gene 111697..113034
/locus_tag="SERP0119"
/db_xref="GeneID:3242980"
CDS 111697..113034
/locus_tag="SERP0119"
/note="identified by match to protein family HMM PF01276"
/codon_start=1
/transl_table=11
/product="Orn/Lys/Arg decarboxylase"
/protein_id="YP_187715.1"
/db_xref="GI:57866010"
/db_xref="GeneID:3242980"
/translation="MKRPIIQKLNHLIEKKAISMHVPGHKNMTIGYLNRLDLAMDMTE
ITGLDDMHYPEGIILESMENFRKHKNYDAFLLVNGTTSGILSVIQAFSTRKGKYLISR
NVHKSVFHGLDITQQQATITKTDVSKKTNQYVNPKINQDKNQYYKLAICTYPNYYGET
FDISQYIKQLHHRGIPILVDEAHGAHFGLYGFPESSMNFNADYVVQSYHKTLPALTMG
SVIYIHKDAPLRQQVIDYLTYFQTSSPSYLIMSSLELANKFYKEYDSTLFDQRRKMLI
DLLVNMGFTVIEPEDPLKLVVSFEGVEGYDVQKWFEDKEIYVELADMYQVLLVLPLWH
EGDKFPFKLLIEKIREINVPKKCTRDIKPLNFMTGFSEYKTVHFQNTKEVSIKRAEGK
VLAQHIVPYPPGIPVMFKGEVVTSHMIDLLNKYDKQNIKVEGLNHKKILVKDE"
misc_feature 111697..113031
/locus_tag="SERP0119"
/note="Arginine/lysine/ornithine decarboxylases [Amino
acid transport and metabolism]; Region: LdcC; COG1982"
/db_xref="CDD:224893"
misc_feature 111706..112560
/locus_tag="SERP0119"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:241782"
misc_feature order(111934..111939,111946..111948,112150..112152,
112234..112236,112243..112245,112315..112317,
112324..112326)
/locus_tag="SERP0119"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 112324..112326
/locus_tag="SERP0119"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
misc_feature <112834..>112941
/locus_tag="SERP0119"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene 113038..113649
/gene="tmk"
/locus_tag="SERP0120"
/db_xref="GeneID:3242981"
CDS 113038..113649
/gene="tmk"
/locus_tag="SERP0120"
/EC_number="2.7.4.9"
/note="catalyzes the reversible phosphoryl transfer from
adenosine triphosphate (ATP) to thymidine monophosphate
(dTMP) to form thymidine diphosphate (dTDP)"
/codon_start=1
/transl_table=11
/product="thymidylate kinase"
/protein_id="YP_187716.1"
/db_xref="GI:57866011"
/db_xref="GeneID:3242981"
/translation="MSTFITFEGPEGAGKTSVIKKVSERLAKEYDIVTTREPGGVLTS
EEIRRIVLDGDSIDIRTEAMLFAASRREHLVEKIIPSLQAGKIVLCDRYIDSSLAYQG
YARGIGIKEVKLLNEFAINGLYPDLTIYLDVDAEIGRQRILKNNREQNRLDKEEKAFH
EKVIEGYQKVISDNPHRFIKVNANHSLDKVVEETYQSIIKYLK"
misc_feature 113038..113646
/gene="tmk"
/locus_tag="SERP0120"
/note="thymidylate kinase; Validated; Region: tmk;
PRK00698"
/db_xref="CDD:234814"
misc_feature 113047..113637
/gene="tmk"
/locus_tag="SERP0120"
/note="Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor. TMPK
represents the rate-limiting step...; Region: TMPK;
cd01672"
/db_xref="CDD:238835"
misc_feature order(113083..113085,113233..113235,113245..113247,
113308..113313,113335..113337,113473..113475)
/gene="tmk"
/locus_tag="SERP0120"
/note="TMP-binding site; other site"
/db_xref="CDD:238835"
misc_feature order(113086..113088,113458..113460,113584..113586)
/gene="tmk"
/locus_tag="SERP0120"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238835"
gene 113683..114012
/locus_tag="SERP0121"
/db_xref="GeneID:3242982"
CDS 113683..114012
/locus_tag="SERP0121"
/note="identified by similarity to OMNI:SA0525"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187717.1"
/db_xref="GI:57866012"
/db_xref="GeneID:3242982"
/translation="MKMIIAIVQDQDSQELSDQLVKNNFRATKLATTGGFLRAGNTTF
LCGVKDDRVDEVLSVIDNTCGNRDQLVSPITPMGGSADSYIPYPVEVEVGGATVFVMP
IEAFHQF"
misc_feature 113683..114009
/locus_tag="SERP0121"
/note="Protein of unknown function (DUF970); Region:
DUF970; pfam06153"
/db_xref="CDD:114848"
gene 114318..115244
/locus_tag="SERP0122"
/db_xref="GeneID:3242983"
CDS 114318..115244
/locus_tag="SERP0122"
/note="identified by similarity to EGAD:13071"
/codon_start=1
/transl_table=11
/product="DNA polymerase III, delta prime subunit"
/protein_id="YP_187718.1"
/db_xref="GI:57866013"
/db_xref="GeneID:3242983"
/translation="MDEQQQLANAYHSNKLSHAYLFEGDDAQTMKRVAIHFTKLILCN
NSNQCELKVDTFNHPDFSYVSSDENTIKKEQIEKLVHHMNQLPIEGQYKVYIIEDFEK
LTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKRQFIERLV
EMSIARPVAEMLSTYTTQIEAASSLNEEFDLVTLRKSIIRWCQLILSNKAMALIGVIE
LLKQAKNRKLQLLTLSAVNGFFEDIMHAKIEMDNYYTFSDLTEEIENYANQLTFNQLI
LMYDQITEAHKKLNQNVNPTLVFEQIVIKGVI"
misc_feature 114330..115232
/locus_tag="SERP0122"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK08058"
/db_xref="CDD:181214"
misc_feature <114594..>114740
/locus_tag="SERP0122"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK08485"
/db_xref="CDD:236274"
gene 115246..116049
/locus_tag="SERP0123"
/db_xref="GeneID:3241647"
CDS 115246..116049
/locus_tag="SERP0123"
/note="identified by similarity to OMNI:SA0527; match to
protein family HMM PF04468"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187719.1"
/db_xref="GI:57866014"
/db_xref="GeneID:3241647"
/translation="MPNVVGVQFQKAGKLEYYAPNQLDVEVGDWVVVQSKRGIEIGHV
KFPLREVDVEDVTLPLKNIIRKMNEDDQETYYRNERDANDALELCKKVVKDQQLDMRL
VNCEYTLDKSKVIFNFTADDRIDFRKLVKVLAQNLKTRIELRQIGVRDEAKLLGGIGP
CGRSLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGACGRLMCCLKYENDYYEEARTQ
LPDVGDMIQTPDGHGKVIGLNILDISMQVKIEGLEQPLEYKMEEIEVLN"
misc_feature 115246..116040
/locus_tag="SERP0123"
/note="Uncharacterized homolog of PSP1 [Function unknown];
Region: COG1774"
/db_xref="CDD:224688"
gene 116066..116413
/locus_tag="SERP0124"
/db_xref="GeneID:3241648"
CDS 116066..116413
/locus_tag="SERP0124"
/note="in Bacillus subtilis this protein is involved in
the negative regulation of DNA replication initiation;
interacts with DnaN and DnaA"
/codon_start=1
/transl_table=11
/product="DNA replication intiation control protein YabA"
/protein_id="YP_187720.1"
/db_xref="GI:57866015"
/db_xref="GeneID:3241648"
/translation="MNRNELFERLMKLEHHVEQLTTDMSELKDLTVELVEENVALQVE
NENLKRLMNKTEESVETHLDKDNYKHVKTPSPSKDNLAMLYREGFHICKGELFGKHRH
GEDCLLCLNVLSD"
misc_feature 116066..116407
/locus_tag="SERP0124"
/note="DNA replication intiation control protein YabA;
Reviewed; Region: PRK13169"
/db_xref="CDD:183876"
gene 116509..117234
/locus_tag="SERP0125"
/db_xref="GeneID:3242665"
CDS 116509..117234
/locus_tag="SERP0125"
/note="identified by similarity to OMNI:SA0529"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187721.1"
/db_xref="GI:57866024"
/db_xref="GeneID:3242665"
/translation="MLEDNERVDHLIKEGYEIIQNDEVFSFSTDALLLGYLTEVRKND
KVMDLCSGNGVIPLLLAAKSTQPIEGIEIQEQLVSMARRSFKLNDLNDRLTMHHMDLK
DVYQTFQPAQYTLVTCNPPYFKMNQNHQHQKEAHKIARHEIMCNLKDCIEAARHLLKE
GGRFIMVHRAERLMDVLTELRHGKIEPKALTLVYSKHDKPAQTIVVEGRKGGNQGLDI
RNPLYIYNEDGSYSDEMKGVYYG"
misc_feature 116509..117231
/locus_tag="SERP0125"
/note="Predicted O-methyltransferase [General function
prediction only]; Region: COG4123"
/db_xref="CDD:226608"
misc_feature 116641..117009
/locus_tag="SERP0125"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(116653..116673,116722..116727,116803..116811,
116863..116865)
/locus_tag="SERP0125"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 117227..117475
/locus_tag="SERP0126"
/db_xref="GeneID:3242666"
CDS 117227..117475
/locus_tag="SERP0126"
/note="identified by similarity to OMNI:SA0530; match to
protein family HMM PF01541"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187722.1"
/db_xref="GI:57866025"
/db_xref="GeneID:3242666"
/translation="MDKHFVYIVKCNDGSLYTGYAKDVNARVIKHNNGKGAKYTKIRR
PVELVYQETYTTKSEALKREYEIKTYTRQQKLKMIQEG"
misc_feature 117236..117439
/locus_tag="SERP0126"
/note="The GIY-YIG domain of uncharacterized protein
family UPF0213 related to structure-specific endonuclease
SLX1; Region: GIY-YIG_UPF0213; cd10456"
/db_xref="CDD:198403"
misc_feature order(117239..117247,117275..117283)
/locus_tag="SERP0126"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198403"
misc_feature order(117245..117247,117275..117277,117281..117283,
117305..117307,117317..117319,117416..117418)
/locus_tag="SERP0126"
/note="putative active site [active]"
/db_xref="CDD:198403"
misc_feature 117416..117418
/locus_tag="SERP0126"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:198403"
gene 117477..118316
/locus_tag="SERP0127"
/db_xref="GeneID:3242667"
CDS 117477..118316
/locus_tag="SERP0127"
/note="identified by match to protein family HMM PF00590;
match to protein family HMM TIGR00096"
/codon_start=1
/transl_table=11
/product="tetrapyrrole family methyltransferase"
/protein_id="YP_187723.1"
/db_xref="GI:57866026"
/db_xref="GeneID:3242667"
/translation="MTTLYLVGTPIGNLGDITFRAIETLKKVDVIACEDTRVTRKLCN
HYEIQTPLKSYHEHNKEQQTDYLIKQLQTGLNIALVSDAGLPLISDPGYELVVEARKN
NINIETVPGPNAGLTALMSSGLPSFTYTFLGFLPRKEKEKIEVLEDRMFQNSTLILYE
SPYRVTDTLKAIAKIDSQRWITVGRELTKKFEQVLTLTVDDMLKLINHDKLPLKGEFV
ILIEGALPKSGESWFESYTVKEHVDYYIETKHVKPKKAIKFVATDRHMKTGDIYNIYH
NID"
misc_feature 117477..118310
/locus_tag="SERP0127"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:223390"
misc_feature 117486..118145
/locus_tag="SERP0127"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(117507..117509,117723..117731,117738..117743,
117813..117818,117951..117953,118026..118028,
118032..118037,118122..118130)
/locus_tag="SERP0127"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(117525..117536,117540..117542,117729..117746,
117753..117758,117762..117767,117798..117800,
117804..117815,117819..117824,117831..117836,
117861..117875)
/locus_tag="SERP0127"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene 118526..120496
/gene="metS"
/locus_tag="SERP0128"
/db_xref="GeneID:3242668"
CDS 118526..120496
/gene="metS"
/locus_tag="SERP0128"
/EC_number="6.1.1.10"
/note="methionine--tRNA ligase; MetRS; adds methionine to
tRNA(Met) with cleavage of ATP to AMP and diphosphate;
some MetRS enzymes form dimers depending on a C-terminal
domain that is also found in other proteins such as
Trbp111 in Aquifex aeolicus and the cold-shock protein
CsaA from Bacillus subtilis while others do not; four
subfamilies exist based on sequence motifs and zinc
content"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA synthetase"
/protein_id="YP_187724.1"
/db_xref="GI:57866027"
/db_xref="GeneID:3242668"
/translation="MAKDTFYITTPIYYPSGNLHIGHAYSTVAGDVIARYKRMQGYDV
RYLTGTDEHGQKIQEKAQKAGKTELEYLDEMISGIKNLWSKLEISNDDFIRTTEERHK
QVVEKVFERLLKQGDIYLGEYEGWYSVPDETYYTESQLVDPVYENGKIVGGKSPDSGH
EVELVKEESYFFNINKYTDRLLEFYDENPDFIQPPSRKNEMINNFIKPGLEDLAVSRT
SFDWGVRVPSNPKHVVYVWIDALVNYISSLGYLSDDETLFNKYWPADIHLMAKEIVRF
HSIIWPILLMALDLPLPKKVFAHGWILMKDGKMSKSKGNVVDPNVLIDRYGLDATRYY
LMRELPFGSDGVFTPEAFVERTNYDLANDLGNLVNRTISMINKYFHGELPAYQGPKHE
LDEKMEAMALETVKSFNDNMESLQFSVALSTVWKFISRTNKYIDETQPWVLAKDENQR
EMLGNVMAHLVENIRFATILLQPFLTHAPREIFKQLNINNPDLHQLDSLQQYGMLSEA
ITVTEKPTPIFPRLDTEAEIAYIKESMQPPKSIKQSDEPGKEQIDIKDFDKVEIKAAT
IIDAENVKKSEKLLKIKVELDNEQRQIVSGIAKFYRPEDIIGKKVAVVTNLKPAKLMG
QKSEGMILSAEKDGVLTLISLPSAIPNGAVIK"
misc_feature 118526..120493
/gene="metS"
/locus_tag="SERP0128"
/note="methionyl-tRNA synthetase; Reviewed; Region:
PRK12267"
/db_xref="CDD:237028"
misc_feature 118538..119566
/gene="metS"
/locus_tag="SERP0128"
/note="catalytic core domain of methioninyl-tRNA
synthetases; Region: MetRS_core; cd00814"
/db_xref="CDD:173907"
misc_feature order(118556..118561,118565..118567,118676..118678,
119234..119236,119243..119248,119255..119257,
119342..119344,119354..119356)
/gene="metS"
/locus_tag="SERP0128"
/note="active site"
/db_xref="CDD:173907"
misc_feature 118583..118594
/gene="metS"
/locus_tag="SERP0128"
/note="HIGH motif; other site"
/db_xref="CDD:173907"
misc_feature 119447..119461
/gene="metS"
/locus_tag="SERP0128"
/note="KMSKS motif; other site"
/db_xref="CDD:173907"
misc_feature 119594..119983
/gene="metS"
/locus_tag="SERP0128"
/note="Anticodon-binding domain of methionyl tRNA
synthetases; Region: Anticodon_Ia_Met; cd07957"
/db_xref="CDD:153411"
misc_feature order(119594..119596,119615..119620,119627..119632,
119639..119644,119651..119656,119663..119668,
119819..119824,119828..119833,119846..119848)
/gene="metS"
/locus_tag="SERP0128"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153411"
misc_feature order(119615..119617,119627..119632,119639..119644,
119651..119656,119663..119668,119828..119830,
119846..119848)
/gene="metS"
/locus_tag="SERP0128"
/note="anticodon binding site; other site"
/db_xref="CDD:153411"
misc_feature 120179..120493
/gene="metS"
/locus_tag="SERP0128"
/note="tRNA-binding-domain-containing Escherichia coli
methionyl-tRNA synthetase (EcMetRS)-like proteins. This
family includes EcMetRS and Aquifex aeolicus Trbp111
(AaTrbp111). This domain has general tRNA binding
properties. MetRS aminoacylates methionine...; Region:
tRNA_bind_EcMetRS_like; cd02800"
/db_xref="CDD:239199"
misc_feature order(120182..120184,120323..120325,120371..120379,
120386..120388,120422..120433,120449..120451,
120455..120457,120461..120463,120470..120472,
120482..120493)
/gene="metS"
/locus_tag="SERP0128"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239199"
misc_feature order(120257..120259,120293..120295,120371..120373,
120383..120385,120404..120406,120413..120415)
/gene="metS"
/locus_tag="SERP0128"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:239199"
gene 120524..121294
/locus_tag="SERP0129"
/db_xref="GeneID:3242669"
CDS 120524..121294
/locus_tag="SERP0129"
/note="identified by match to protein family HMM PF01026;
match to protein family HMM TIGR00010"
/codon_start=1
/transl_table=11
/product="TatD family deoxyribonuclease"
/protein_id="YP_187725.1"
/db_xref="GI:57866028"
/db_xref="GeneID:3242669"
/translation="MLIDTHVHLNDEQYDEDLNEVISRAREAGVDRMFVVGFDTPTIE
RTMELIDKYDFIYGIIGWHPVDAIDCTDERLEWIESLSKHPKIIGIGEMGLDYHWDKS
PSDVQKEVFKKQIALAKRVQLPIIIHNREATQDCIDILIEEHAEEVGGIMHSFSASPE
IADVVINKLNFYVSLGGPVTFKNAKQPKEVAKHVPMDRLLCETDAPYLSPHPYRGKRN
EPERVTLVAQQIADLRGMTYEEVCRQTTENAERLFNLN"
misc_feature 120524..121291
/locus_tag="SERP0129"
/note="Predicted metal-dependent hydrolases with the
TIM-barrel fold [General function prediction only];
Region: COG1099"
/db_xref="CDD:31296"
misc_feature 120527..121285
/locus_tag="SERP0129"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:30053"
misc_feature order(120539..120541,120545..120547,120905..120907,
120980..120982,121133..121135)
/locus_tag="SERP0129"
/note="active site"
/db_xref="CDD:30053"
gene 121501..122046
/locus_tag="SERP0130"
/db_xref="GeneID:3242670"
CDS 121501..122046
/locus_tag="SERP0130"
/note="identified by match to protein family HMM PF01751;
match to protein family HMM TIGR00334"
/codon_start=1
/transl_table=11
/product="primase-related protein"
/protein_id="YP_187726.1"
/db_xref="GI:57866029"
/db_xref="GeneID:3242670"
/translation="MKINEFIVVEGKDDTERVKSAVDCDTIETNGSAIDTYTLEVIQH
AQQTRGVIVLTDPDFPGDKIRNTIREHVSGVKHAYVDREKAKSKRGKIGIEHANIKDI
QEALMHVSSPLEEAKETIDKSVLIDLGLIIGKDARYRRNILGRKLHIGHSNGKQLLKK
LNAFGYTEDDVRKALFEEEEN"
misc_feature 121504..122025
/locus_tag="SERP0130"
/note="ribonuclease M5; Region: 5S_RNA_mat_M5; TIGR00334"
/db_xref="CDD:232924"
misc_feature 121507..121737
/locus_tag="SERP0130"
/note="TOPRIM_ RNase M5_like: The topoisomerase-primase
(TOPRIM) nucleotidyl transferase/hydrolase domain found in
Ribonuclease M5: (RNase M5) and other small primase-like
proteins from bacteria and archaea. RNase M5 catalyzes
the maturation of 5S rRNA in low...; Region:
TOPRIM_RNase_M5_like; cd01027"
/db_xref="CDD:173777"
misc_feature order(121528..121533,121540..121542,121666..121668,
121672..121674,121678..121680)
/locus_tag="SERP0130"
/note="putative active site [active]"
/db_xref="CDD:173777"
misc_feature order(121528..121530,121666..121668)
/locus_tag="SERP0130"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:173777"
misc_feature 121771..122025
/locus_tag="SERP0130"
/note="Domain of unknown function (DUF4093); Region:
DUF4093; pfam13331"
/db_xref="CDD:205511"
gene 122047..122937
/gene="ksgA"
/locus_tag="SERP0131"
/db_xref="GeneID:3242671"
CDS 122047..122937
/gene="ksgA"
/locus_tag="SERP0131"
/EC_number="2.1.1.-"
/note="catalyzes the transfer of a total of four methyl
groups from S-adenosyl-l-methionine (S-AdoMet) to two
adjacent adenosine bases A1518 and A1519 in 16S rRNA;
mutations in ksgA causes resistance to the translation
initiation inhibitor kasugamycin"
/codon_start=1
/transl_table=11
/product="dimethyladenosine transferase"
/protein_id="YP_187727.1"
/db_xref="GI:57866030"
/db_xref="GeneID:3242671"
/translation="MEYKDIATPSRTRALLDQYGFNFKKSLGQNFLIDVNIINKIIEA
SHIDCTTGVIEVGPGMGSLTEQLAKNAKKVMAFEIDQRLIPVLKDTLSPYDNVTIINE
DILKADIAKAVDTHLQDCDKIMVVANLPYYITTPILLNLMQQDVPIDGFVVMMQKEVG
ERLNAQVGTKAYGSLSIVAQYYTETSKVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQ
VDDEEGFFKLAKAAFAQRRKTINNNYQNFFKDGKKNKETIRQWLESAGIDPKRRGETL
TIQDFATLYEQKKKFSELTN"
misc_feature 122068..122907
/gene="ksgA"
/locus_tag="SERP0131"
/note="16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed; Region: ksgA; PRK00274"
/db_xref="CDD:234708"
misc_feature 122203..>122439
/gene="ksgA"
/locus_tag="SERP0131"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(122212..122232,122278..122283,122365..122373,
122428..122430)
/gene="ksgA"
/locus_tag="SERP0131"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 123037..123300
/locus_tag="SERP0132"
/db_xref="GeneID:3242672"
CDS 123037..123300
/locus_tag="SERP0132"
/note="identified by similarity to OMNI:SA0537"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187728.1"
/db_xref="GI:57866031"
/db_xref="GeneID:3242672"
/translation="MPKSILDIKNSIDCHLGNRIVLKANGGRKKTIERSGVLKETYPS
VFIVELDQDKHNFERVSYTYTDVLTENVQVSFEEDNHQEAVAH"
misc_feature 123037..123264
/locus_tag="SERP0132"
/note="Protein of unknown function (DUF1021); Region:
DUF1021; pfam06257"
/db_xref="CDD:218961"
gene 123693..124541
/gene="ipk"
/locus_tag="SERP0133"
/db_xref="GeneID:3242568"
CDS 123693..124541
/gene="ipk"
/locus_tag="SERP0133"
/EC_number="2.7.1.148"
/note="An essential enzyme in the nonmevalonate pathway of
isopentenyl diphosphate and dimethylallyl diphosphate
biosynthesis"
/codon_start=1
/transl_table=11
/product="4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase"
/protein_id="YP_187729.1"
/db_xref="GI:57866039"
/db_xref="GeneID:3242568"
/translation="MIYETAPAKINFTLDTLFKRDDGYHEIEMVMTTVDLNDRLSFEK
RTDNKIVVDIEHNYVPNDNKNLAYKAADLMFERFNINEGVTISIDKDIPVSAGLAGGS
ADAAATMRGLNRLFGLGQSLDALAALGIQIGTDIPFCIYNQTAVCTGRGEQVTFLKRP
PSAWVVLAKPNIGISSPDVFKALDLTEEHIVHNEKCKQALENNDYHLLCNSLSNRLEP
VSMAMHPDIKKIKDNMLQCGADGALMSGSGPTVYGLAQKERQAKNIYNAVNGCCNEVY
LVRLLG"
misc_feature 123693..124538
/gene="ipk"
/locus_tag="SERP0133"
/note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional; Region: ipk; PRK00128"
/db_xref="CDD:234652"
misc_feature 123945..124115
/gene="ipk"
/locus_tag="SERP0133"
/note="GHMP kinases N terminal domain; Region:
GHMP_kinases_N; pfam00288"
/db_xref="CDD:215839"
misc_feature 124281..124499
/gene="ipk"
/locus_tag="SERP0133"
/note="GHMP kinases C terminal; Region: GHMP_kinases_C;
pfam08544"
/db_xref="CDD:219894"
gene 124556..125380
/gene="purR"
/locus_tag="SERP0134"
/db_xref="GeneID:3242569"
CDS 124556..125380
/gene="purR"
/locus_tag="SERP0134"
/note="identified by similarity to EGAD:16043; match to
protein family HMM PF00156; match to protein family HMM
TIGR01743"
/codon_start=1
/transl_table=11
/product="pur operon repressor"
/protein_id="YP_187730.1"
/db_xref="GI:57866040"
/db_xref="GeneID:3242569"
/translation="MRYKRSERIVFMTQYLMNHPNKLIPLTYFVKKFKQAKSSISEDV
QIIKNTFQNEKLGTIITTAGASGGVTYKPMMSKSEATEVVDEVIEQLQEKDRLLPGGY
LFLSDLVGNPSLLNKVGKLIASIYMNEELDAVVTIATKGISLANAVANVLNLPVVVIR
KDNKVTEGSTVSINYVSGSSRKIETMVLSKRTLAENSNVLVVDDFMRAGGSINGVMNL
MNEFKAHVKGVSVLVESKEVKQRLIEDYTSLVRLSDVDEYNQEFKVEPGNSLSKFS"
misc_feature 124556..125368
/gene="purR"
/locus_tag="SERP0134"
/note="pur operon repressor; Provisional; Region:
PRK09213"
/db_xref="CDD:236414"
misc_feature 124565..>124723
/gene="purR"
/locus_tag="SERP0134"
/note="Bacterial purine repressor, N-terminal; Region:
PuR_N; pfam09182"
/db_xref="CDD:150015"
misc_feature 124907..125290
/gene="purR"
/locus_tag="SERP0134"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(124967..124969,124973..124975,125162..125170,
125174..125188,125258..125260)
/gene="purR"
/locus_tag="SERP0134"
/note="active site"
/db_xref="CDD:206754"
gene 125402..125782
/locus_tag="SERP0135"
/db_xref="GeneID:3242570"
CDS 125402..125782
/locus_tag="SERP0135"
/note="identified by match to protein family HMM PF01042;
match to protein family HMM TIGR00004"
/codon_start=1
/transl_table=11
/product="endoribonuclease L-PSP"
/protein_id="YP_187731.1"
/db_xref="GI:57866041"
/db_xref="GeneID:3242570"
/translation="MKIINSDKVPEALGPYSHATVINGFVFTSGQIPLTLDGTIVSDD
VQEQTKQVLENLTVVLKEAGSDLNSVVKATIYISDMNDFQQINQIYGNYFVEHQPARS
CVEVSRLPKDVKVEIELIGKVKEL"
misc_feature 125447..125761
/locus_tag="SERP0135"
/note="YjgF, YER057c, and UK114 belong to a large family
of proteins present in bacteria, archaea, and eukaryotes
with no definitive function. The conserved domain is
similar in structure to chorismate mutase but there is no
sequence similarity and no...; Region:
YjgF_YER057c_UK114_family; cd00448"
/db_xref="CDD:100004"
misc_feature order(125447..125452,125459..125461,125465..125467,
125474..125476,125480..125482,125486..125491,
125606..125608,125612..125617,125621..125623,
125627..125629,125660..125662,125669..125671,
125696..125719,125747..125749,125753..125755,
125759..125761)
/locus_tag="SERP0135"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100004"
misc_feature order(125447..125449,125648..125650,125660..125662,
125702..125704,125747..125749)
/locus_tag="SERP0135"
/note="putative active site [active]"
/db_xref="CDD:100004"
gene 125842..126150
/gene="spoVG"
/locus_tag="SERP0136"
/db_xref="GeneID:3241762"
CDS 125842..126150
/gene="spoVG"
/locus_tag="SERP0136"
/note="stage V sporulation protein G; essential for spore
formation and a negative regulator of asymmetric septation
in Bacillus; involved in methicillin-resistance, biofilm
formation and capsular polysaccharide synthesis in
Staphylococcus"
/codon_start=1
/transl_table=11
/product="regulatory protein SpoVG"
/protein_id="YP_187732.1"
/db_xref="GI:57866042"
/db_xref="GeneID:3241762"
/translation="MKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLF
VAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVMKVYDETDEVIPDKNATSDNEESDEA
"
misc_feature 125842..126123
/gene="spoVG"
/locus_tag="SERP0136"
/note="regulatory protein SpoVG; Reviewed; Region:
PRK13259"
/db_xref="CDD:237321"
gene 126760..128115
/gene="glmU"
/locus_tag="SERP0137"
/db_xref="GeneID:3241763"
CDS 126760..128115
/gene="glmU"
/locus_tag="SERP0137"
/EC_number="2.7.7.23"
/note="forms a homotrimer; catalyzes the acetylation of
glucosamine-1-phosphate and uridylation of
N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc;
function in cell wall synthesis"
/codon_start=1
/transl_table=11
/product="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase"
/protein_id="YP_187733.1"
/db_xref="GI:57866043"
/db_xref="GeneID:3241763"
/translation="MQRHAIILAAGKGTRMKSKKYKVLHEVAGKPMVEHVLNNVKQAG
VDQIVTIIGHGAESVKDTLGNQSLYSFQDKQLGTAHAVKMAHEHLADKEGTTLVVCGD
TPLITYQTLQSLIEHHESTQSHVTVLSASTINPYGYGRIIRNHNGILERIVEEKDAND
SERAIKEISSGIFAFNNRVLFEKLEQVKNDNAQGEYYLPDVLSLILKDGGKAEVYCTE
DFDEIIGVNDRLMLSEAEKALQQRINRYHMENGVTIIDPSSTFIGTDVKIGIDTTIEP
GVRIGGHTTIEEDVWIGQYSEINNSTIHSNANIKQSVINDSIVGENTTVGPFAQLRPG
SNLGSEVKVGNFVEVKKADIKDGAKVSHLSYIGDAEIGERTNIGCGSITVNYDGANKF
KTIVGKDAFIGCNTNLIAPVTVGNHTLIAAGSTITDNIPEDSLALARARQVNKEGYLK
K"
misc_feature 126760..128112
/gene="glmU"
/locus_tag="SERP0137"
/note="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional; Region: glmU; PRK14354"
/db_xref="CDD:184643"
misc_feature 126772..127455
/gene="glmU"
/locus_tag="SERP0137"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature order(126781..126789,126910..126912,126991..126993,
127000..127002,127057..127059,127063..127065)
/gene="glmU"
/locus_tag="SERP0137"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature order(127063..127065,127438..127440)
/gene="glmU"
/locus_tag="SERP0137"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
misc_feature 127510..128085
/gene="glmU"
/locus_tag="SERP0137"
/note="N-acetyl-glucosamine-1-phosphate uridyltransferase
(GlmU), C-terminal left-handed beta-helix (LbH)
acetyltransferase domain: GlmU is also known as
UDP-N-acetylglucosamine pyrophosphorylase. It is a
bifunctional bacterial enzyme that catalyzes two...;
Region: LbH_GlmU_C; cd03353"
/db_xref="CDD:100044"
misc_feature order(127753..127755,127801..127803,127807..127809,
127843..127845,127852..127854,127885..127896,
127909..127917,127930..127932,127960..127962,
127966..127971,128020..128025,128074..128076)
/gene="glmU"
/locus_tag="SERP0137"
/note="active site"
/db_xref="CDD:100044"
misc_feature order(127753..127755,127801..127803,127807..127809,
127843..127845,127852..127854,127885..127893,
127912..127914,127930..127932)
/gene="glmU"
/locus_tag="SERP0137"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100044"
misc_feature order(127894..127896,127909..127911,127915..127917,
127966..127971,128020..128025,128074..128076)
/gene="glmU"
/locus_tag="SERP0137"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100044"
gene 128259..129224
/gene="prsA"
/locus_tag="SERP0138"
/db_xref="GeneID:3241764"
CDS 128259..129224
/gene="prsA"
/locus_tag="SERP0138"
/EC_number="2.7.6.1"
/note="catalyzes the formation of 5-phospho-alpha-D-ribose
1-phosphate from D-ribose 5-phosphate and ATP"
/codon_start=1
/transl_table=11
/product="ribose-phosphate pyrophosphokinase"
/protein_id="YP_187734.1"
/db_xref="GI:57866044"
/db_xref="GeneID:3241764"
/translation="MLNNEYKNSSMKIFSLKGNEPLAQEVADHVGIELGKCSVKRFSD
GEIQINIEESIRGCDVFIVQPTSYPVNLHLMELLIMIDACKRASAANINIVVPYYGYA
RQDRKARSREPITAKLVANLIETAGANRMIALDLHAPQIQGFFDIPIDHLMGVPILAQ
HFENDPDINPEECVVVSPDHGGVTRARKLADILKTPIAIIDKRRPKPNVAEVMNIVGD
IEGRTAIIIDDIIDTAGTITLAAQALKDKGAKEVYACCTHPVLSGPAKERIENSAIKQ
LIVTNSIQLEENRKPNNTKELSVAGLIAKAIIRVYERESVSVLFD"
misc_feature 128289..129221
/gene="prsA"
/locus_tag="SERP0138"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:234929"
misc_feature 128289..128639
/gene="prsA"
/locus_tag="SERP0138"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:222383"
misc_feature 128721..129104
/gene="prsA"
/locus_tag="SERP0138"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(128793..128795,128799..128801,128940..128948,
128952..128966,129036..129038)
/gene="prsA"
/locus_tag="SERP0138"
/note="active site"
/db_xref="CDD:206754"
gene 129394..130053
/gene="rplY"
/locus_tag="SERP0139"
/db_xref="GeneID:3241765"
CDS 129394..130053
/gene="rplY"
/locus_tag="SERP0139"
/note="the Ctc family of proteins consists of two types,
one that contains the N-terminal ribosomal protein L25
domain only which in Escherichia coli binds the 5S rRNA
while a subset of proteins contain a C-terminal extension
that is involved in the stress response"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L25"
/protein_id="YP_187735.1"
/db_xref="GI:57866045"
/db_xref="GeneID:3241765"
/translation="MASLKSIIRQGKQTRSDLKQLRNSGKVPAVVYGYGTKNTSVKVD
EVEFIKVIREVGRNGVIDLGVGSKTIKVMVSDYQFDPLKNQITHIDFLAINMSEERTV
EVQVQLVGEAVGAKEGGVVEQPLFNLEVTATPENIPETIEVDISELQVNDSLAVSDIK
ISGDFTIENNPEDSIVTVVPPTDEPSEEEVEAMEGESATEEPEVVGEDKEDDEEENKE
D"
misc_feature 129394..129939
/gene="rplY"
/locus_tag="SERP0139"
/note="50S ribosomal protein L25/general stress protein
Ctc; Reviewed; Region: PRK05618"
/db_xref="CDD:235534"
misc_feature 129400..129672
/gene="rplY"
/locus_tag="SERP0139"
/note="Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding
domain; Region: Ribosomal_L25_TL5_CTC; cd00495"
/db_xref="CDD:198379"
misc_feature order(129418..129420,129445..129453,129457..129459,
129487..129495,129505..129507,129616..129621,
129625..129627,129655..129657,129661..129663,
129667..129669)
/gene="rplY"
/locus_tag="SERP0139"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:198379"
misc_feature order(129493..129495,129568..129570,129604..129606,
129616..129618,129667..129672)
/gene="rplY"
/locus_tag="SERP0139"
/note="CTC domain interface [polypeptide binding]; other
site"
/db_xref="CDD:198379"
misc_feature order(129610..129615,129622..129624,129643..129645,
129667..129669)
/gene="rplY"
/locus_tag="SERP0139"
/note="L16 interface [polypeptide binding]; other site"
/db_xref="CDD:198379"
gene 130306..130878
/gene="pth"
/locus_tag="SERP0140"
/db_xref="GeneID:3241766"
CDS 130306..130878
/gene="pth"
/locus_tag="SERP0140"
/EC_number="3.1.1.29"
/note="Enables the recycling of peptidyl-tRNAs produced at
termination of translation"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase"
/protein_id="YP_187736.1"
/db_xref="GI:57866046"
/db_xref="GeneID:3241766"
/translation="MKCIVGLGNIGKRFELTRHNIGFEVVDDILERHQFTLDKQKFKG
AYTIERLNGEKVLFIEPMTMMNLSGQAVAPLMDYYNVDVEDLIVLYDDLDLEQGQVRL
RQKGSAGGHNGMKSIIKMLGTDQFKRIRIGVGRPTNGMSVPDYVLQKFSKEEMIIMEK
VIEHSARAVESFIESSRFDHVMNEFNGEVK"
misc_feature 130312..130824
/gene="pth"
/locus_tag="SERP0140"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:238259"
misc_feature order(130330..130332,130360..130362,130495..130500,
130576..130578,130636..130638)
/gene="pth"
/locus_tag="SERP0140"
/note="putative active site [active]"
/db_xref="CDD:238259"
misc_feature 130360..130362
/gene="pth"
/locus_tag="SERP0140"
/note="catalytic residue [active]"
/db_xref="CDD:238259"
gene 130875..134384
/gene="mfd"
/locus_tag="SERP0141"
/db_xref="GeneID:3242423"
CDS 130875..134384
/gene="mfd"
/locus_tag="SERP0141"
/note="identified by similarity to EGAD:14131; match to
protein family HMM PF00270; match to protein family HMM
PF00271; match to protein family HMM PF02559; match to
protein family HMM PF03461; match to protein family HMM
TIGR00580"
/codon_start=1
/transl_table=11
/product="transcription-repair coupling factor"
/protein_id="YP_187737.1"
/db_xref="GI:57866056"
/db_xref="GeneID:3242423"
/translation="MKSMIANYISEDNRFQELDEVFGQENILVTGLSPSAKATIIAEK
YLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKYPVQDIMTEEFSTQSPQLMSER
VRTLTALAQGEKGLFIVPLNGFKKWLTPVDLWKDHQMTLKVGQDIDVDAFLNKLVNMG
YRRESVVSHIGEFSLRGGIIDIYPLIGTPVRIELFDTEVDSIRDFDVETQRSNDNINQ
VEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRNDLKETYESFKLFESTFFD
HQLLRRLVSFMYEKPSTLIDYFQKNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESG
NGFIGQGFMKYESFDALLEQHAVAYFTLFTSSMQVPLQHIIKFSCKPVQQFYGQYDIM
RSEFQRYVHQDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDGGQVVVTEGSL
SEGFELPYMQLVVITERELFKTRQKKQRKRTKTISNAEKIKSYQDLNVGDYIVHVHHG
VGRYLGVETLEVGDTHRDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKSPRLNKLGG
TEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQ
SKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQ
QHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYK
DLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETP
PENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQRLMPDAN
IAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQ
LYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIR
GAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDAYLPA
EYIQSEQAKIEIYKKLRKVETEEQLFDVKDELIDRFNDYPIEVERLLDIVEIKVHALH
AGVELIKDKGKSIQIILSPKATEDINGEELFKQTQPLGRAMKVGVQNNAMNVTLTKSK
QWLDSLKFLVRCIEESMAIKDED"
misc_feature 130920..134363
/gene="mfd"
/locus_tag="SERP0141"
/note="Transcription-repair coupling factor (superfamily
II helicase) [DNA replication, recombination, and repair /
Transcription]; Region: Mfd; COG1197"
/db_xref="CDD:31390"
misc_feature 132357..132647
/gene="mfd"
/locus_tag="SERP0141"
/note="CarD-like/TRCF domain; Region: CarD_CdnL_TRCF;
pfam02559"
/db_xref="CDD:202283"
misc_feature 132795..133205
/gene="mfd"
/locus_tag="SERP0141"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 132822..132836
/gene="mfd"
/locus_tag="SERP0141"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 133116..133127
/gene="mfd"
/locus_tag="SERP0141"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 133323..133676
/gene="mfd"
/locus_tag="SERP0141"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(133380..133391,133455..133460,133533..133541)
/gene="mfd"
/locus_tag="SERP0141"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(133557..133559,133623..133625,133635..133637,
133644..133646)
/gene="mfd"
/locus_tag="SERP0141"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 133935..134234
/gene="mfd"
/locus_tag="SERP0141"
/note="This domain is found in proteins necessary for
strand-specific repair in DNA such as TRCF in Escherichia
coli; Region: TRCF; smart00982"
/db_xref="CDD:198050"
gene 134374..135915
/locus_tag="SERP0142"
/db_xref="GeneID:3242424"
CDS 134374..135915
/locus_tag="SERP0142"
/note="identified by match to protein family HMM PF01943"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein"
/protein_id="YP_187738.1"
/db_xref="GI:57866057"
/db_xref="GeneID:3242424"
/translation="MKTKSETAFNGVVILTLALIIVKILSAIYRIPYQNVLGDDGLYA
YQQIYPVVALGVILSMNAIPSAVTQVIGVNRSDEVYTRVMFRLQCIGFIVFILLFMFA
NMITRWMGDSNLAPMLKMASFSFILIGVLGVLRGFYQSKQVMTIPAISQVIEQVIRVS
LIIVAIIMFSMKHWSIYQAGALAILASSIGFLGSMLYLLLKKPLKLKLCYRFNNTSIQ
WKQLFISISIFALSQLIVILWQVVDSFTIIRLLQHSGIAFKEAIIQKGIYDRGASFIQ
MGLIVTTTFSFVLIPLLTQAIREHNQIHMNRYANASIKITVVISTAASIGLINLLPLM
NVVFFKSNHLTLTLSVYMFTVICVSLIMMNISLLQVQTSIRPIIMGVIIGILSKIILN
VILIPFWGIVGASVSTVLSLLLFVIILQVAVLKYYRFNRISLFIVKLILGMIIMSIVV
QTVMLALPSKSRMLGLLELIVSSIIGIVIIMLYIIIFNVLGYKEIKHLPFGDKLYQMK
RGRRS"
misc_feature 134410..135660
/locus_tag="SERP0142"
/note="Stage V sporulation protein B, also known as Stage
III sporulation protein F, and related proteins; Region:
MATE_SpoVB_like; cd13124"
/db_xref="CDD:240529"
gene 135912..137102
/locus_tag="SERP0143"
/db_xref="GeneID:3242425"
CDS 135912..137102
/locus_tag="SERP0143"
/note="identified by match to protein family HMM PF00590;
match to protein family HMM PF03819"
/codon_start=1
/transl_table=11
/product="tetrapyrrole methylase"
/protein_id="YP_187739.1"
/db_xref="GI:57866058"
/db_xref="GeneID:3242425"
/translation="MTHTITIVGLGNYGIDELPLGIYRFLEKESKVYARTLNHPVINT
LKKEIEFESFDSIYEAHDRFEDVYEAIVTSLIELAQSEDIVYAVPGHPRVAETTTVKL
LEYSHFNKDISVKVLGGKSFIDDIFEAVDVDPNDGFTLLDGTSLKESALNVRTNTVIT
QVYSVMIAADLKLTLMERYPDDFNVKIITGSHSDGAHVIECPLYEIDRYDDYFNNLTS
LFIPKINEDTLLYQDFDYAVQTIDLLVDNEKGCPWDKVQTHDSLKRYLLEETFELFEA
IDNEDDWHMIEELGDILLQVLLHSSIGKKEGYIDIKEIIESLNTKMIHRHPHIFGNAH
VTSQEDLKDIWSRAKEKEGKVPRVKFEKVFADHFLKLYDKTKNRQFDEDDLKQFLQQG
EKNS"
misc_feature 135921..136583
/locus_tag="SERP0143"
/note="N-terminal S-AdoMet dependent methylase domain of
Bacillus subtilis YabN and related proteins; Region:
YabN_N; cd11723"
/db_xref="CDD:212509"
misc_feature order(135945..135947,136176..136184,136191..136196,
136272..136277,136389..136391,136473..136475,
136479..136484,136557..136565)
/locus_tag="SERP0143"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212509"
misc_feature order(135963..135974,135978..135980,136182..136199,
136212..136217,136221..136226,136257..136259,
136263..136274,136278..136283,136290..136295,
136329..136343)
/locus_tag="SERP0143"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212509"
misc_feature 136614..136958
/locus_tag="SERP0143"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) N-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs; Region:
NTP-PPase_MazG_Nterm; cd11528"
/db_xref="CDD:212135"
misc_feature order(136617..136622,136629..136631,136686..136691,
136698..136700,136707..136712,136719..136724,
136731..136733,136740..136742,136755..136757,
136764..136769,136776..136793,136797..136799,
136806..136808,136833..136835,136842..136856,
136860..136868,136872..136877)
/locus_tag="SERP0143"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212135"
misc_feature order(136716..136718,136725..136727,136773..136775,
136782..136784)
/locus_tag="SERP0143"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212135"
gene 137099..137362
/locus_tag="SERP0144"
/db_xref="GeneID:3242426"
CDS 137099..137362
/locus_tag="SERP0144"
/note="identified by match to protein family HMM PF01479"
/codon_start=1
/transl_table=11
/product="S4 domain-containing protein"
/protein_id="YP_187740.1"
/db_xref="GI:57866059"
/db_xref="GeneID:3242426"
/translation="MRLDKYLKVSRLVKRRTLAKEISDQGRVTVNGNVAKAGTDIKEN
DELIIRFGQKLVTVKVTGLSDHATKENAKGMYDLIKEERINEE"
misc_feature 137099..137275
/locus_tag="SERP0144"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature order(137102..137104,137138..137143,137147..137152,
137156..137161,137168..137173,137177..137179,
137198..137203,137204..137218,137222..137224)
/locus_tag="SERP0144"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
gene 137386..137787
/locus_tag="SERP0145"
/db_xref="GeneID:3242427"
CDS 137386..137787
/locus_tag="SERP0145"
/note="identified by match to protein family HMM PF04977"
/codon_start=1
/transl_table=11
/product="cell-division protein DivIC"
/protein_id="YP_187741.1"
/db_xref="GI:57866060"
/db_xref="GeneID:3242427"
/translation="MNKKVEHIGNQYTSQENKKKQRQKMKMRVVRRRIALFGGILLAI
ILILLVLLVIQRHNNDQDAVERKEKETEFQKQQDEEIALKEKLNNLNDKDYIEKIARD
DYYLSNKGEVIFRLPDDKKSSQSKTSNEKGN"
misc_feature 137548..137742
/locus_tag="SERP0145"
/note="Septum formation initiator; Region: DivIC;
pfam04977"
/db_xref="CDD:203138"
misc_feature <137554..137754
/locus_tag="SERP0145"
/note="Septum formation initiator [Cell division and
chromosome partitioning]; Region: COG2919"
/db_xref="CDD:225471"
gene 137881..138282
/locus_tag="SERP0146"
/db_xref="GeneID:3242428"
CDS 137881..138282
/locus_tag="SERP0146"
/note="identified by similarity to SP:P05055; match to
protein family HMM PF00575"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187742.1"
/db_xref="GI:57866061"
/db_xref="GeneID:3242428"
/translation="MSIEVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVE
NVEDHLSVGDEVEVKVLSIADDGKISLSIKKAKDRPRKPRHSKANHGKPVQKTEDFEK
KLSNFLKDSEDKLTSIKRQTESRRGGKGSRR"
misc_feature 137881..138279
/locus_tag="SERP0146"
/note="hypothetical protein; Provisional; Region:
PRK08582"
/db_xref="CDD:236305"
misc_feature 137896..138102
/locus_tag="SERP0146"
/note="S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_hs4; cd05692"
/db_xref="CDD:240197"
misc_feature order(137920..137922,137944..137946,137974..137976,
137980..137982)
/locus_tag="SERP0146"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240197"
gene 138376..138474
/locus_tag="SERP0147"
/db_xref="GeneID:3240894"
CDS 138376..138474
/locus_tag="SERP0147"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187743.1"
/db_xref="GI:57866062"
/db_xref="GeneID:3240894"
/translation="MIKHMQHPHGVGGRIQLYYFEFSPTPIFVDVE"
gene 138560..139858
/locus_tag="SERP0148"
/db_xref="GeneID:3240895"
CDS 138560..139858
/locus_tag="SERP0148"
/note="identified by similarity to EGAD:18381; match to
protein family HMM PF01171"
/codon_start=1
/transl_table=11
/product="MesJ/Ycf62 family protein"
/protein_id="YP_187744.1"
/db_xref="GI:57866063"
/db_xref="GeneID:3240895"
/translation="MNIKTDGWSKKAHIVVAVSTGIDSMSLLYSLLNDYQHTYRKLTC
VHVNHGLREQSYEEEAFLREYCHQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWF
GDIIAQLRADVLLTAHHLDDQFETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLN
LKKTEILAYQYANQIPYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAHQLLKLKDW
HDIELQSLKEQAETFINNEVSKSKYLTYSFSRTAFNELNVNIKSVVMDLLFEKLDCHL
AMPQHAYDEWFEQIRNDKSQFNIHVTDEWIIQIAYDKLIIMAKSEMDQYILDRICIRK
PGTYEFNDYQIDIHPDLPQQLYPLTVRVRQNGDVYKLNGQKGHKKVSRLFIDKKVTLA
ERQRIPLIINQENAVLAIGDLYVKENFKEFILISNNGDEL"
misc_feature 138596..>139210
/locus_tag="SERP0148"
/note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning]; Region:
MesJ; COG0037"
/db_xref="CDD:223115"
misc_feature 138596..139156
/locus_tag="SERP0148"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:238950"
misc_feature order(138608..138616,138620..138631,138695..138697,
138701..138703)
/locus_tag="SERP0148"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238950"
misc_feature 139631..139819
/locus_tag="SERP0148"
/note="TilS substrate C-terminal domain; Region: TilS_C;
smart00977"
/db_xref="CDD:198045"
gene 139858..140397
/gene="hpt"
/locus_tag="SERP0149"
/db_xref="GeneID:3240531"
CDS 139858..140397
/gene="hpt"
/locus_tag="SERP0149"
/EC_number="2.4.2.8"
/note="identified by similarity to EGAD:18056; match to
protein family HMM PF00156; match to protein family HMM
TIGR01203"
/codon_start=1
/transl_table=11
/product="hypoxanthine phosphoribosyltransferase"
/protein_id="YP_187745.1"
/db_xref="GI:57866072"
/db_xref="GeneID:3240531"
/translation="MHKDLKNVLLSEEDIQNICKEMGAIITEDYKDRPLVCVGILKGS
VMFMADLIKRIDTHLSIDFMDVSSYHGGTESTGEVQILKDLGASIENKDVLIIEDILE
TGTTLKSITELLQSRKVNSLEIATLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYR
ELYRNLPYIGTLKAEVYSK"
misc_feature 139870..140331
/gene="hpt"
/locus_tag="SERP0149"
/note="Pyrimidine operon attenuation protein/uracil
phosphoribosyltransferase [Nucleotide transport and
metabolism]; Region: PyrR; COG2065"
/db_xref="CDD:224976"
misc_feature 139909..140286
/gene="hpt"
/locus_tag="SERP0149"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(139978..139980,139984..139986,140149..140157,
140161..140175,140245..140247)
/gene="hpt"
/locus_tag="SERP0149"
/note="active site"
/db_xref="CDD:206754"
gene 140672..142774
/locus_tag="SERP0150"
/db_xref="GeneID:3240532"
CDS 140672..142774
/locus_tag="SERP0150"
/note="identified by similarity to EGAD:18839; match to
protein family HMM PF00004; match to protein family HMM
PF01434; match to protein family HMM TIGR01241"
/codon_start=1
/transl_table=11
/product="cell division protein FtsH"
/protein_id="YP_187746.1"
/db_xref="GI:57866073"
/db_xref="GeneID:3240532"
/translation="MQKAFRNVLVIAIIGVIIFGLFSFLNGNGNMPKQLTYTQFVNKL
NKGDLKTLEIQPEQNVYMVSGKTKKDEDYSSTILYNNEKDLQKITDTAKKQDNLKFTV
KEEEKQSVFVSILTTLIPVLIIALLFIFFLSQAQGGGGGGRMMNFGKSKAKMYDSNKR
RVRFSDVAGADEEKQELIEIVDFLKDNKKFKQMGSRIPKGVLLVGPPGTGKTLLARAV
AGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAG
VGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPALLRPGRFDRQIQVGR
PDVKGREAILHVHAKNKPLDETVDLKAISQRTPGFSGADLENLLNEASLIAAREGKNK
IDMRDIEEATDRVIAGPAKKSRVISEKERNIVAHHEAGHTIIGMVLDEAEIVHKVTIV
PRGQAGGYAMMLPKQDRFLMTEPELLDKICGLLGGRVSEDINFGEVSTGASNDFERAT
QIARSMVTEYGMSKKLGPLQFSSNSGGQVFLGKDMQGEPNYSGQIAYEIDKEVQRIVK
EQYERCKQILLEHEEQLKLIAKTLLSEETLVAEQIQSLFYDGVLPEVDYDSAKVVKNE
NSDYSDGKYGKSYNDIRKEQLEDDDKEDDDNHEKDEVNQDNTDREADNTSHTNEPGHQ
QSPNIDKPYNPNDPNHRQ"
misc_feature 140693..140986
/locus_tag="SERP0150"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:219052"
misc_feature 141098..142486
/locus_tag="SERP0150"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:233327"
misc_feature 141173..141670
/locus_tag="SERP0150"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 141284..141307
/locus_tag="SERP0150"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(141287..141310,141461..141463,141602..141604)
/locus_tag="SERP0150"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 141449..141466
/locus_tag="SERP0150"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 141644..141646
/locus_tag="SERP0150"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 141851..142483
/locus_tag="SERP0150"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:216502"
gene 143029..143910
/gene="hslO"
/locus_tag="SERP0151"
/db_xref="GeneID:3240533"
CDS 143029..143910
/gene="hslO"
/locus_tag="SERP0151"
/note="becomes active under oxidative stress; four
conserved cysteines bind a zinc atom when they are in the
reduced state and the enzyme is inactive; oxidative stress
results in oxidized cysteines, release of zinc, and
binding of Hsp33 to aggregation-prone proteins; forms
dimers and higher order oligomers"
/codon_start=1
/transl_table=11
/product="heat shock protein 33"
/protein_id="YP_187747.1"
/db_xref="GI:57866074"
/db_xref="GeneID:3240533"
/translation="MTHDYIVRGLAYGGEIRAYAAITTESVQEAQTRHYTWPTASAAM
GRTMTATVMMGAMLKGNQKLTVTVDGKGPIGRIIADADAQGNVRAYVDHPQTHFPLND
QGKLDVRRAVGTDGSIQVVKDVGMKDYFSGASPIVSGELGDDFTYYYATSEQTPSSVG
LGVLVNPDNSIKAAGGFIIQVMPGATDETVTKLEEAISQMQPVSKLIEQGLTPEGILN
EILGEGNVQILNSTSAQFECNCSHEKFLNAIKGLGEAEIHSMIKEDHGAEAVCHFCGN
KYQYSESELEDLLETMK"
misc_feature 143032..143907
/gene="hslO"
/locus_tag="SERP0151"
/note="Hsp33-like chaperonin; Reviewed; Region: hslO;
PRK00114"
/db_xref="CDD:234643"
misc_feature 143044..143871
/gene="hslO"
/locus_tag="SERP0151"
/note="Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat...; Region: Hsp33;
cd00498"
/db_xref="CDD:238278"
misc_feature order(143077..143079,143470..143472,143482..143490,
143566..143568,143740..143742)
/gene="hslO"
/locus_tag="SERP0151"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238278"
misc_feature order(143077..143079,143548..143550,143554..143556,
143566..143577)
/gene="hslO"
/locus_tag="SERP0151"
/note="domain crossover interface; other site"
/db_xref="CDD:238278"
misc_feature order(143740..143742,143746..143748,143839..143841,
143848..143850)
/gene="hslO"
/locus_tag="SERP0151"
/note="redox-dependent activation switch; other site"
/db_xref="CDD:238278"
gene 144247..145179
/gene="cysK"
/locus_tag="SERP0152"
/db_xref="GeneID:3240534"
CDS 144247..145179
/gene="cysK"
/locus_tag="SERP0152"
/EC_number="2.5.1.47"
/note="identified by similarity to SP:P37887; match to
protein family HMM PF00291; match to protein family HMM
TIGR01136; match to protein family HMM TIGR01139"
/codon_start=1
/transl_table=11
/product="cysteine synthase"
/protein_id="YP_187748.1"
/db_xref="GI:57866075"
/db_xref="GeneID:3240534"
/translation="MAQKPVDYVTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGS
VKDRIALAMIEKAEREGKIKPGDTIVEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQ
ERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEEHGYFEPQQFENPANPEIHELTTG
PELVEQFEGRQIDAFLAGVGTGGTLSGVGKVLKKEYPNVEIVAIEPEASPVLSGGEPG
PHKLQGLGAGFVPDTLNTEVYDSIIKVGNDTAMDMARRVAREEGILAGISSGAAIYAA
IQKAKELGKGKTVVTVLPSNGERYLSTPLYSFDN"
misc_feature 144265..145155
/gene="cysK"
/locus_tag="SERP0152"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:223110"
misc_feature 144286..145152
/gene="cysK"
/locus_tag="SERP0152"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature order(144298..144306,144343..144345,144361..144363,
144367..144369,144493..144495,144502..144504,
144550..144555,144562..144567,144574..144579,
144739..144744,145018..145026,145030..145038,
145108..145110,145138..145140,145147..145149)
/gene="cysK"
/locus_tag="SERP0152"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature order(144382..144384,144472..144474,144781..144798,
144916..144918,145048..145050,145126..145131)
/gene="cysK"
/locus_tag="SERP0152"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature 144382..144384
/gene="cysK"
/locus_tag="SERP0152"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene 145475..146293
/gene="folP"
/locus_tag="SERP0153"
/db_xref="GeneID:3240535"
CDS 145475..146293
/gene="folP"
/locus_tag="SERP0153"
/EC_number="2.5.1.15"
/note="identified by similarity to EGAD:40403; match to
protein family HMM PF00809; match to protein family HMM
TIGR01496"
/codon_start=1
/transl_table=11
/product="dihydropteroate synthase"
/protein_id="YP_187749.1"
/db_xref="GI:57866076"
/db_xref="GeneID:3240535"
/translation="MIKTKIMGILNVTPDSFSDGGQYHSVDQAVKRAKEMIDEGVDII
DVGGVSTRPGHKEVSHKEVSLKEEMNRVLPVVESIVKYDVQISVDTFRSEVAEACLKL
GVSMINDQWAGLFDSNMFNVVSQYGAEIVLMHNGDGHRDKPVVEEMLVSLLAQANKAE
LAGIPHNKIWLDPGIGFAKTREEENEVMARLDELVATEYPVLLATSRKRYIKEMMNQD
SSPSDRDEATAATTAYGIMKGVRGVRVHNVLLNTRLAQSMDFLKENEYERHHLS"
misc_feature 145484..146251
/gene="folP"
/locus_tag="SERP0153"
/note="DHPS subgroup of Pterin binding enzymes. DHPS
(dihydropteroate synthase), a functional homodimer,
catalyzes the condensation of p-aminobenzoic acid (pABA)
in the de novo biosynthesis of folate, which is an
essential cofactor in both nucleic acid and...; Region:
DHPS; cd00739"
/db_xref="CDD:238380"
misc_feature 145487..146257
/gene="folP"
/locus_tag="SERP0153"
/note="dihydropteroate synthase; Region: DHPS; TIGR01496"
/db_xref="CDD:233439"
misc_feature order(145505..145507,145739..145741,145796..145798,
145802..145804,145871..145873,145988..145990,
146084..146086,146096..146098,146204..146206,
146210..146212)
/gene="folP"
/locus_tag="SERP0153"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238380"
misc_feature order(146027..146029,146039..146044,146162..146164,
146174..146176,146186..146188,146231..146236)
/gene="folP"
/locus_tag="SERP0153"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238380"
misc_feature 146090..146098
/gene="folP"
/locus_tag="SERP0153"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:238380"
gene 146271..146636
/gene="folB"
/locus_tag="SERP0154"
/db_xref="GeneID:3240536"
CDS 146271..146636
/gene="folB"
/locus_tag="SERP0154"
/EC_number="4.1.2.25"
/note="identified by similarity to SP:P56740; match to
protein family HMM PF02152; match to protein family HMM
TIGR00525; match to protein family HMM TIGR00526"
/codon_start=1
/transl_table=11
/product="dihydroneopterin aldolase"
/protein_id="YP_187750.1"
/db_xref="GI:57866077"
/db_xref="GeneID:3240536"
/translation="MNDIIFLNGMRFYGYHGVLAAENDIGQIFVVDITLKVDLSYAGQ
SDDVKDTVNYGEVYKDVKSIVEGPRSCLIEHLAERIAKHINSHYNRVMETKVRITKEN
PPIPGHYDGVGIEIVREND"
misc_feature 146277..146627
/gene="folB"
/locus_tag="SERP0154"
/note="Dihydroneopterin aldolase (DHNA) and
7,8-dihydroneopterin triphosphate epimerase domain
(DHNTPE); these enzymes have been designated folB and
folX, respectively. Folate derivatives are essential
cofactors in the biosynthesis of purines, pyrimidines,
and...; Region: DHNA_DHNTPE; cd00534"
/db_xref="CDD:238298"
misc_feature order(146277..146309,146325..146351,146574..146579,
146592..146618)
/gene="folB"
/locus_tag="SERP0154"
/note="homooctamer interface [polypeptide binding]; other
site"
/db_xref="CDD:238298"
misc_feature order(146319..146327,146334..146336,146481..146492,
146568..146570,146610..146612)
/gene="folB"
/locus_tag="SERP0154"
/note="active site"
/db_xref="CDD:238298"
gene 146637..147116
/gene="folK"
/locus_tag="SERP0155"
/db_xref="GeneID:3240537"
CDS 146637..147116
/gene="folK"
/locus_tag="SERP0155"
/EC_number="2.7.6.3"
/note="identified by similarity to EGAD:18680; match to
protein family HMM PF01288; match to protein family HMM
TIGR01498"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_187751.1"
/db_xref="GI:57866078"
/db_xref="GeneID:3240537"
/translation="MVKAYLGLGSNIGNRELQLNEAIKILHDYQGIQVTQVSHIYETE
PVGYTNQPKFLNLCIEIETELNPQSLLKCCLTTEQQLHRKREIRWGPRTLDIDILLFG
DQIIEQDNLSVPHPRMKERSFVLIPLNDIATKQIEPISNKSIGQLVVPDNSVKKYKE"
misc_feature 146646..147029
/gene="folK"
/locus_tag="SERP0155"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:238269"
misc_feature order(146661..146663,146763..146768,146772..146774,
146796..146798,146802..146804,146847..146849,
146859..146861,146868..146870,146883..146885,
146889..146891,146901..146903,146910..146912,
146919..146921,146925..146930,146970..146972,
146979..146984,146997..146999,147003..147005)
/gene="folK"
/locus_tag="SERP0155"
/note="catalytic center binding site [active]"
/db_xref="CDD:238269"
misc_feature order(146847..146849,146859..146861,146868..146870,
146883..146885,146889..146891,146910..146912,
146925..146930,146970..146972,146979..146984,
146997..146999)
/gene="folK"
/locus_tag="SERP0155"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238269"
gene 147452..148939
/gene="lysS"
/locus_tag="SERP0156"
/db_xref="GeneID:3241010"
CDS 147452..148939
/gene="lysS"
/locus_tag="SERP0156"
/EC_number="6.1.1.6"
/note="class II; LysRS2; catalyzes a two-step reaction,
first charging a lysine molecule by linking its carboxyl
group to the alpha-phosphate of ATP, followed by transfer
of the aminoacyl-adenylate to its tRNA; in Methanosarcina
barkeri, LysRS2 charges both tRNA molecules for lysine
that exist in this organism and in addition can charge the
tRNAPyl with lysine in the presence of LysRS1"
/codon_start=1
/transl_table=11
/product="lysyl-tRNA synthetase"
/protein_id="YP_187752.1"
/db_xref="GI:57866087"
/db_xref="GeneID:3241010"
/translation="MSEEMNDQMQVRRQKLQELIDLGIDPFGHRFNRSSTSSELKEQW
DQFSKEELHEKEDESHVSIAGRLMTKRGKGKAGFAHIQDLKGQIQIYVRKDQVGDDQF
NIWKMADLGDIIGVEGVMFKTNTGEISVKAKSFTLLSKSLRPLPDKFHGLQDIEQRYR
QRYLDLITNEDSTQTFINRSKIIQEMRNYLNKQGFLEVETPMMHQIAGGAAARPFVTH
HNALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAY
ADYHDIMDLTENMVRHIAQEVFGSAKVQYNDEEIDLESSWKRLHIVDAVKEVTGVDFY
NVNSDEEAIRLAKEHDIEITENMKYGHILNEFFEQKVEETLIQPTFIYGHPIEISPLA
KKNPNDERFTDRFELFIVGREHANAFTELNDPIDQRQRFEAQLVEKEQGNDEAHDMDE
DYIEALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK"
misc_feature 147458..148936
/gene="lysS"
/locus_tag="SERP0156"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysS;
PRK00484"
/db_xref="CDD:234778"
misc_feature 147629..147949
/gene="lysS"
/locus_tag="SERP0156"
/note="LysRS_N: N-terminal, anticodon recognition domain
of lysyl-tRNA synthetases (LysRS). These enzymes are
homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs).
This domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop; Region: LysRS_N;
cd04322"
/db_xref="CDD:239817"
misc_feature order(147644..147649,147698..147703,147788..147790,
147866..147868,147875..147883)
/gene="lysS"
/locus_tag="SERP0156"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239817"
misc_feature order(147656..147658,147662..147667,147683..147685,
147716..147718,147722..147724,147776..147778,
147818..147820,147836..147838)
/gene="lysS"
/locus_tag="SERP0156"
/note="putative anticodon binding site; other site"
/db_xref="CDD:239817"
misc_feature 147956..148933
/gene="lysS"
/locus_tag="SERP0156"
/note="Lys_tRNA synthetase (LysRS) class II core domain.
Class II LysRS is a dimer which attaches a lysine to the
3' OH group of ribose of the appropriate tRNA. Its
assignment to class II aaRS is based upon its structure
and the presence of three...; Region: LysRS_core; cd00775"
/db_xref="CDD:238398"
misc_feature 148052..148066
/gene="lysS"
/locus_tag="SERP0156"
/note="motif 1; other site"
/db_xref="CDD:238398"
misc_feature order(148148..148150,148214..148216,148220..148222,
148238..148240,148250..148252,148667..148669,
148688..148690,148697..148699,148709..148711,
148865..148867)
/gene="lysS"
/locus_tag="SERP0156"
/note="active site"
/db_xref="CDD:238398"
misc_feature 148211..148222
/gene="lysS"
/locus_tag="SERP0156"
/note="motif 2; other site"
/db_xref="CDD:238398"
misc_feature 148856..148867
/gene="lysS"
/locus_tag="SERP0156"
/note="motif 3; other site"
/db_xref="CDD:238398"
gene 149424..149538
/gene="rrfG"
/locus_tag="SERP_Se5SG"
/db_xref="GeneID:3240466"
rRNA 149424..149538
/gene="rrfG"
/locus_tag="SERP_Se5SG"
/product="1 ribosomal RNA"
/db_xref="GeneID:3240466"
gene 149549..149624
/locus_tag="SERP_tRNA-Val-1"
/db_xref="GeneID:3241688"
tRNA 149549..149624
/locus_tag="SERP_tRNA-Val-1"
/product="tRNA-Val"
/db_xref="GeneID:3241688"
gene 149631..149706
/locus_tag="SERP_tRNA-Thr-1"
/db_xref="GeneID:3241681"
tRNA 149631..149706
/locus_tag="SERP_tRNA-Thr-1"
/product="tRNA-Thr"
/db_xref="GeneID:3241681"
gene 149713..149785
/locus_tag="SERP_tRNA-Lys-1"
/db_xref="GeneID:3242195"
tRNA 149713..149785
/locus_tag="SERP_tRNA-Lys-1"
/product="tRNA-Lys"
/db_xref="GeneID:3242195"
gene 149804..149878
/locus_tag="SERP_tRNA-Gly-1"
/db_xref="GeneID:3242207"
tRNA 149804..149878
/locus_tag="SERP_tRNA-Gly-1"
/product="tRNA-Gly"
/db_xref="GeneID:3242207"
gene 149890..149978
/locus_tag="SERP_tRNA-Leu-1"
/db_xref="GeneID:3242190"
tRNA 149890..149978
/locus_tag="SERP_tRNA-Leu-1"
/product="tRNA-Leu"
/db_xref="GeneID:3242190"
gene 149991..150067
/locus_tag="SERP_tRNA-Arg-1"
/db_xref="GeneID:3242180"
tRNA 149991..150067
/locus_tag="SERP_tRNA-Arg-1"
/product="tRNA-Arg"
/db_xref="GeneID:3242180"
gene 150094..150167
/locus_tag="SERP_tRNA-Pro-1"
/db_xref="GeneID:3241672"
tRNA 150094..150167
/locus_tag="SERP_tRNA-Pro-1"
/product="tRNA-Pro"
/db_xref="GeneID:3241672"
gene 150182..150257
/locus_tag="SERP_tRNA-Ala-1"
/db_xref="GeneID:3242177"
tRNA 150182..150257
/locus_tag="SERP_tRNA-Ala-1"
/product="tRNA-Ala"
/db_xref="GeneID:3242177"
gene 150374..151927
/gene="rrsB"
/locus_tag="SERP_Se16SB"
/db_xref="GeneID:3240449"
rRNA 150374..151927
/gene="rrsB"
/locus_tag="SERP_Se16SB"
/product="16S ribosomal RNA"
/db_xref="GeneID:3240449"
gene 152191..155112
/gene="rrlB"
/locus_tag="SERP_Se23SB"
/db_xref="GeneID:3240455"
rRNA 152191..155112
/gene="rrlB"
/locus_tag="SERP_Se23SB"
/product="23S ribosomal RNA"
/db_xref="GeneID:3240455"
gene 155183..155297
/gene="rrfB"
/locus_tag="SERP_Se5SB"
/db_xref="GeneID:3240461"
rRNA 155183..155297
/gene="rrfB"
/locus_tag="SERP_Se5SB"
/product="5S ribosomal RNA"
/db_xref="GeneID:3240461"
gene 155526..157079
/gene="rrsC"
/locus_tag="SERP_Se16SC"
/db_xref="GeneID:3240450"
rRNA 155526..157079
/gene="rrsC"
/locus_tag="SERP_Se16SC"
/product="16S ribosomal RNA"
/db_xref="GeneID:3240450"
gene 157175..157251
/locus_tag="SERP_tRNA-Ile-1"
/db_xref="GeneID:3242176"
tRNA 157175..157251
/locus_tag="SERP_tRNA-Ile-1"
/product="tRNA-Ile"
/db_xref="GeneID:3242176"
gene 157435..160356
/gene="rrlC"
/locus_tag="SERP_Se23SC"
/db_xref="GeneID:3240456"
rRNA 157435..160356
/gene="rrlC"
/locus_tag="SERP_Se23SC"
/product="23S ribosomal RNA"
/db_xref="GeneID:3240456"
gene 160427..160541
/gene="rrfC"
/locus_tag="SERP_Se5SC"
/db_xref="GeneID:3240462"
rRNA 160427..160541
/gene="rrfC"
/locus_tag="SERP_Se5SC"
/product="5S ribosomal RNA"
/db_xref="GeneID:3240462"
gene complement(160782..162146)
/locus_tag="SERP0157"
/db_xref="GeneID:3241011"
CDS complement(160782..162146)
/locus_tag="SERP0157"
/note="identified by match to protein family HMM PF00392"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_187753.1"
/db_xref="GI:57866088"
/db_xref="GeneID:3241011"
/translation="MKVNQPLYLSLYEKLKNQIIEGQYQSNDRFPSKRQLSNYLSVSH
TTIEHAYQLLVDEGFIYSKPRSGYFVSDIESLPVIHRQTNQLNTDNLEKKQRQYKYAF
NLAEIDSESFPMHIFRKYAKDVFEDHQLSLLQRGERQGEYILRQQISHYLFNSRGVTC
HPNQIIVGSSTSQLLDMITNLLKKEEFIIEQPSYPPIKHTLDKKGISYIQVPVEQNGI
QIDPILNTNNNILYITPSHQFPTGYVTNLKKRTQLINWSHQAKQRYIIEDDYDSEFRY
FGKPIPALQSLDTKGKVIYISTFSKSLYPSCRIAYIVLPQNLMHKYNNQKYKEGNTVP
VHVQHMIAQFMISGKFERHLNKMRKIYRDKLDYILKRLKPYNTQIKIEGALTGMHFTI
TVNNGLSMKQCLKNAKKNNLKLKPYHYENYSKVYPKFILGFGGIKKEELEDHVNALIH
SLVI"
misc_feature complement(160803..162137)
/locus_tag="SERP0157"
/note="Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino acid
transport and metabolism]; Region: ARO8; COG1167"
/db_xref="CDD:31361"
misc_feature complement(161934..162131)
/locus_tag="SERP0157"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(161943..161954,161958..161963,
161991..161993,162000..162005,162009..162023,
162045..162050,162054..162056,162123..162125,
162129..162131))
/locus_tag="SERP0157"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(160803..161843)
/locus_tag="SERP0157"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(161223..161225,161244..161249,
161253..161255,161334..161336,161430..161432,
161565..161567,161631..161639))
/locus_tag="SERP0157"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(161127..161129,161136..161138,
161223..161231,161355..161357,161535..161537,
161628..161630))
/locus_tag="SERP0157"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(161244..161246)
/locus_tag="SERP0157"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 162243..163130
/locus_tag="SERP0158"
/db_xref="GeneID:3241012"
CDS 162243..163130
/locus_tag="SERP0158"
/note="with PdxT forms pyridoxal 5'-phosphate from
glutamine, either ribose 5-phosphate or ribulose
5-phosphate, and either glyceraldehyde 3-phosphate or
dihydroxyacetone phosphate"
/codon_start=1
/transl_table=11
/product="pyridoxal biosynthesis lyase PdxS"
/protein_id="YP_187754.1"
/db_xref="GI:57866089"
/db_xref="GeneID:3241012"
/translation="MSKIVGSDRVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVM
ALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLESMGVDYI
DESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVE
AVRHMRRVNSEVSRLTVMNDDEIMTFAKDLGAPYEVLKQIKDNGRLPVVNFAAGGVAT
PQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGKLASELGTAM
KGLDINQISLEERMQERGW"
misc_feature 162276..163124
/locus_tag="SERP0158"
/note="PdxS is a subunit of the pyridoxal 5'-phosphate
(PLP) synthase, an important enzyme in deoxyxylulose
5-phosphate (DXP)-independent pathway for de novo
biosynthesis of PLP, present in some eubacteria, in
archaea, fungi, plants, plasmodia, and some...; Region:
pdxS; cd04727"
/db_xref="CDD:73389"
misc_feature order(162315..162317,162372..162374,162486..162488,
162702..162710,162885..162887,162942..162944)
/locus_tag="SERP0158"
/note="active site"
/db_xref="CDD:73389"
misc_feature order(162417..162419,162423..162425,162447..162449,
162492..162494,162501..162509,162516..162518,
162567..162581,162705..162713,162717..162719,
162726..162731,162738..162740,162891..162893,
162900..162905,163026..163028)
/locus_tag="SERP0158"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73389"
gene 163130..163690
/locus_tag="SERP0159"
/db_xref="GeneID:3241013"
CDS 163130..163690
/locus_tag="SERP0159"
/note="with PdxST is involved in the biosynthesis of
pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of
glutamine to glutamate and ammonia; PdxS utilizes the
ammonia to synthesize pyridoxal 5'-phosphate"
/codon_start=1
/transl_table=11
/product="glutamine amidotransferase subunit PdxT"
/protein_id="YP_187755.1"
/db_xref="GI:57866090"
/db_xref="GeneID:3241013"
/translation="MIKIGVLALQGAVREHIRHIELSGYEGIAIKRVEQLDEIDGLIL
PGGESTTLRRLMDLYGFKEKLQQLDLPMFGTCAGLIVLAKNVENESGYLNKLDITVER
NSFGRQVDSFESELDIKGIANDIEGVFIRAPHIAKVDNGVEILSKVGGKIVAVKQGQY
LGVSFHPELTDDYRITKYFIEHMIKH"
misc_feature 163139..163669
/locus_tag="SERP0159"
/note="Glutamine Amidotransferase (GATase_I) involved in
pyridoxine biosynthesis; Region: GATase1_PB; cd01749"
/db_xref="CDD:153220"
misc_feature order(163265..163273,163355..163357,163433..163435,
163517..163522,163625..163627,163631..163633)
/locus_tag="SERP0159"
/note="predicted active site [active]"
/db_xref="CDD:153220"
misc_feature order(163355..163357,163625..163627,163631..163633)
/locus_tag="SERP0159"
/note="catalytic triad [active]"
/db_xref="CDD:153220"
repeat_region 163850..163886
/note="IR-left"
/rpt_type=inverted
gene 164286..165299
/locus_tag="SERP0160"
/db_xref="GeneID:3241014"
CDS 164286..165299
/locus_tag="SERP0160"
/note="RTD; identified by match to protein family HMM
PF02371"
/codon_start=1
/transl_table=11
/product="ISSep1-like transposase"
/protein_id="YP_187756.1"
/db_xref="GI:57866091"
/db_xref="GeneID:3241014"
/translation="MERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLG
PTLKQTDSLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPGLERLFSSR
YSIIALNIAEIFTHPDMVLDIDKEVLITHIFNSTDKGMSMDKATKYALQLRVIAQESY
PNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLST
AMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIM
NIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQM
SPH"
misc_feature <164775..165125
/locus_tag="SERP0160"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:33349"
misc_feature 164898..>165101
/locus_tag="SERP0160"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:202223"
gene complement(165575..166789)
/gene="nupC"
/locus_tag="SERP0161"
/db_xref="GeneID:3241015"
CDS complement(165575..166789)
/gene="nupC"
/locus_tag="SERP0161"
/note="identified by similarity to EGAD:30360; match to
protein family HMM PF01773"
/codon_start=1
/transl_table=11
/product="nucleoside permease NupC"
/protein_id="YP_187757.1"
/db_xref="GI:57866092"
/db_xref="GeneID:3241015"
/translation="MHIVIGILGIIFFLALAVLFSSDRKNIRWRYVGLLLVIQLIFAF
ILLKTNLGISVIGSISDGFNYLLAKAAVGVNFVFGGFKFIDPKQPPFFFSVLLPIVFI
SALIGILQYTRILPLIINLLGFLISKINGMGRLESYNAVAAAILGQSEVFISLKKQLP
YIPKQRLYTLTASAMSTVSASIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKV
NEEDDKLLIDENETKKQSFFEMLGEYILDGFKVAVIVGAMLIGYIAIIALLNGMVSGI
LSFMSGGAIQWNFQTLIGFIFAPFAFLTGIPWQDAVQSGSVMATKLLSNEFVAMQDLG
KATGLSEHAKGITSVFLVSFANFSSIGIISGAIKSLNDEKGDVVARFGIKLLFGATLV
SFISAAIAGFFI"
misc_feature complement(165578..166732)
/gene="nupC"
/locus_tag="SERP0161"
/note="Nucleoside permease [Nucleotide transport and
metabolism]; Region: NupC; COG1972"
/db_xref="CDD:224883"
misc_feature complement(<166589..166732)
/gene="nupC"
/locus_tag="SERP0161"
/note="Na+ dependent nucleoside transporter N-terminus;
Region: Nucleos_tra2_N; pfam01773"
/db_xref="CDD:201962"
misc_feature complement(166211..166516)
/gene="nupC"
/locus_tag="SERP0161"
/note="Nucleoside recognition; Region: Gate; pfam07670"
/db_xref="CDD:219507"
misc_feature complement(165578..166210)
/gene="nupC"
/locus_tag="SERP0161"
/note="Na+ dependent nucleoside transporter C-terminus;
Region: Nucleos_tra2_C; pfam07662"
/db_xref="CDD:219502"
gene 166946..167407
/gene="ctsR"
/locus_tag="SERP0162"
/db_xref="GeneID:3242674"
CDS 166946..167407
/gene="ctsR"
/locus_tag="SERP0162"
/note="identified by match to protein family HMM PF05848"
/codon_start=1
/transl_table=11
/product="CtsR family transcriptional regulator"
/protein_id="YP_187758.1"
/db_xref="GI:57866093"
/db_xref="GeneID:3242674"
/translation="MHNMSDIIEQYIKRLFEEADEDVVEIQRAHIAQRFDCVPSQLNY
VIKTRFTNEHGYEIESKRGGGGYIRITKIENKDATGYINHLLQLIGPSISQQQGYYVI
DGLLDKGLINEREAKMIQTIIDRETLKMDVVARDIIRANILKRLLPVINYY"
misc_feature 166946..167404
/gene="ctsR"
/locus_tag="SERP0162"
/note="Transcriptional repressor of class III stress genes
[Transcription]; Region: CtsR; COG4463"
/db_xref="CDD:226869"
gene 167413..167991
/locus_tag="SERP0163"
/db_xref="GeneID:3242682"
CDS 167413..167991
/locus_tag="SERP0163"
/note="identified by match to protein family HMM PF02151"
/codon_start=1
/transl_table=11
/product="UvrB/UvrC domain-containing protein"
/protein_id="YP_187759.1"
/db_xref="GI:57866100"
/db_xref="GeneID:3242682"
/translation="MRCLKLLCENCHFNEAEVKLTVKGIDSTHEKWVCSVCAQGENPW
LHSNDDNTYHTHQDDIEEAFVVKQILQHLAAKHGINFHEMAFKEEKKCPTCQMTLKDI
AHVGKLGCADCYATFKEDIIDIVQRVQGGQFEHVGKTPQSSYKKLAIKKQIEEKSKYL
NKLIDGQEFEEAAIVRDEIKALKSESEVSHDE"
misc_feature 167428..167967
/locus_tag="SERP0163"
/note="Modulator of heat shock repressor CtsR, McsA
[Signal transduction mechanisms]; Region: COG3880"
/db_xref="CDD:33669"
misc_feature 167860..167967
/locus_tag="SERP0163"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene 167981..168988
/locus_tag="SERP0164"
/db_xref="GeneID:3241297"
CDS 167981..168988
/locus_tag="SERP0164"
/note="identified by match to protein family HMM PF00217"
/codon_start=1
/transl_table=11
/product="ATP:guanido phosphotransferase"
/protein_id="YP_187760.1"
/db_xref="GI:57866101"
/db_xref="GeneID:3241297"
/translation="MMSNIHTNISEWMKMSEETPVIISSRIRLARNLENHVHPLMFPS
EQEGYRVINEVQDALSNLTLNRLDTMDQQSKMKLVAKHLVSPELVKQPASAVMLNDDE
SVSVMINEEDHIRIQALGTDLSLKDLYQRASKIDDELDKALDISYDEHLGYLTTCPTN
IGTGMRASVMLHLPGLSIMKRMNRIAQTINRFGFTIRGIYGEGSQVYGHIYQVSNQLT
LGKTEEDIIDNLTEVVNQIINEEKQIRERLDKHNSVETLDRVYRSLGVLQNSRIISME
EASYRLSEVKLGIDLNYILLENFKFNELMVAIQSPFLIDDDDNRTVNEKRADLLREHI
K"
misc_feature 167984..168979
/locus_tag="SERP0164"
/note="ATP:guanido phosphotransferase; Provisional;
Region: PRK01059"
/db_xref="CDD:179213"
misc_feature 168035..168709
/locus_tag="SERP0164"
/note="Phosphagen (guanidino) kinases found in bacteria;
Region: bacterial_phosphagen_kinase; cd07930"
/db_xref="CDD:153077"
misc_feature order(168050..168052,168056..168058,168062..168064,
168224..168226,168299..168301,168323..168325,
168476..168478,168482..168490,168569..168571,
168575..168577,168581..168586,168614..168616)
/locus_tag="SERP0164"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:153077"
misc_feature order(168311..168313,168449..168451,168587..168592)
/locus_tag="SERP0164"
/note="phosphagen binding site; other site"
/db_xref="CDD:153077"
misc_feature order(168560..168604,168608..168625)
/locus_tag="SERP0164"
/note="substrate specificity loop; other site"
/db_xref="CDD:153077"
gene 169002..171455
/gene="clpC"
/locus_tag="SERP0165"
/db_xref="GeneID:3241298"
CDS 169002..171455
/gene="clpC"
/locus_tag="SERP0165"
/note="identified by similarity to EGAD:18028; match to
protein family HMM PF00004; match to protein family HMM
PF02151; match to protein family HMM PF02861"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease, ATP-binding subunit
ClpC"
/protein_id="YP_187761.1"
/db_xref="GI:57866102"
/db_xref="GeneID:3241298"
/translation="MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEG
IAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNF
VGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKSNNT
PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIA
EGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQAGNVIL
FIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRF
QPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVSDRFLPDKAI
DLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAVHAQEFENAANLRDKQSKLE
KQYEDAKNEWKNAQGGLDTALSEENIAEVIAGWTGIPLTKINETESDRLLNLEDTLHK
RVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGED
DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHP
DVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQDQRFAGFGGASEGSDY
ETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNIN
IVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNKIEGKEVTIDHDG
KEFKYDIYEITAKKETTES"
misc_feature 169014..171422
/gene="clpC"
/locus_tag="SERP0165"
/note="ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones]; Region: clpA; COG0542"
/db_xref="CDD:223616"
misc_feature 169050..169208
/gene="clpC"
/locus_tag="SERP0165"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 169278..169430
/gene="clpC"
/locus_tag="SERP0165"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 169548..170006
/gene="clpC"
/locus_tag="SERP0165"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 169623..169646
/gene="clpC"
/locus_tag="SERP0165"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(169626..169649,169836..169838,169947..169949)
/gene="clpC"
/locus_tag="SERP0165"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 169824..169841
/gene="clpC"
/locus_tag="SERP0165"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 169998..170000
/gene="clpC"
/locus_tag="SERP0165"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 170250..170357
/gene="clpC"
/locus_tag="SERP0165"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
misc_feature 170532..170978
/gene="clpC"
/locus_tag="SERP0165"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 170634..170657
/gene="clpC"
/locus_tag="SERP0165"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(170637..170660,170850..170852,170976..170978)
/gene="clpC"
/locus_tag="SERP0165"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 170838..170855
/gene="clpC"
/locus_tag="SERP0165"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 171141..171383
/gene="clpC"
/locus_tag="SERP0165"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene 171946..173319
/gene="radA"
/locus_tag="SERP0166"
/db_xref="GeneID:3241299"
CDS 171946..173319
/gene="radA"
/locus_tag="SERP0166"
/note="Sms; stabilizes the strand-invasion intermediate
during the DNA repair; involved in recombination of donor
DNA and plays an important role in DNA damage repair after
exposure to mutagenic agents"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadA"
/protein_id="YP_187762.1"
/db_xref="GI:57866103"
/db_xref="GeneID:3241299"
/translation="MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPK
HGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRVLGGGIVSGSLVLIGGDPGIGKS
TLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEG
QIAGPRLLEHMVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNP
SEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPRRMATGIDHNRLSLL
MAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGE
VGLTGEVRRVSRIEQRVQEATKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKY
ALHSKQR"
misc_feature 171946..173301
/gene="radA"
/locus_tag="SERP0166"
/note="DNA repair protein RadA; Provisional; Region:
PRK11823"
/db_xref="CDD:236994"
misc_feature 171967..173076
/gene="radA"
/locus_tag="SERP0166"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:238541"
misc_feature 172228..172251
/gene="radA"
/locus_tag="SERP0166"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:238541"
misc_feature order(172231..172233,172243..172251,172303..172305,
172309..172311,172453..172458)
/gene="radA"
/locus_tag="SERP0166"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238541"
misc_feature 172444..172455
/gene="radA"
/locus_tag="SERP0166"
/note="Walker B motif; other site"
/db_xref="CDD:238541"
misc_feature <173035..173223
/gene="radA"
/locus_tag="SERP0166"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
gene 173355..174431
/locus_tag="SERP0167"
/db_xref="GeneID:3241300"
CDS 173355..174431
/locus_tag="SERP0167"
/note="identified by similarity to OMNI:SA0573; match to
protein family HMM PF01850; match to protein family HMM
PF01938"
/codon_start=1
/transl_table=11
/product="twitching motility protein PilT"
/protein_id="YP_187763.1"
/db_xref="GI:57866104"
/db_xref="GeneID:3241300"
/translation="MEGGYKLNITKAIVVAIYIIVGAALGVIIIPEVVTDLGIHHHAV
ITNYYVDGFIGIIIFFIIFGLFINKVTYAFKQFEQLIMRRSAVEILFATIGLIIGLFI
SVMVSFILEMIGNSILNHFVPMIITIILCYLGFQFGLKKRDEMLMFLPENMARSMSNN
IRRATPKIVDTSAIIDGRILDIIRCGFIDGDILIPQGVINELQVIADAKDSVKREKGQ
RGLDILNQLYDLDYPTRVIHPTQSHSDIDTLLIKLAQQYHAHVITTDFNLNKVCHVQG
ITALNVNDLSEAIKPNVHQGDQLSILLTKIGKEPGQGVGYLDDGTMVVVDNAKSYIGQ
QVNLEVVSLLQTSSGRIVFAKFVD"
misc_feature 173445..174419
/locus_tag="SERP0167"
/note="Integral membrane protein (PIN domain superfamily)
[General function prediction only]; Region: COG4956"
/db_xref="CDD:227292"
misc_feature 173853..174227
/locus_tag="SERP0167"
/note="PIN domain of Thermus Thermophilus Hb8,
uncharacterized Bacillus subtilis YacL, and other
bacterial homologs; Region: PIN_YacL; cd09877"
/db_xref="CDD:189047"
misc_feature order(173862..173864,173955..173957,174093..174095,
174147..174149)
/locus_tag="SERP0167"
/note="putative active site [active]"
/db_xref="CDD:189047"
gene 174830..176284
/gene="gltX"
/locus_tag="SERP0168"
/db_xref="GeneID:3241301"
CDS 174830..176284
/gene="gltX"
/locus_tag="SERP0168"
/EC_number="6.1.1.17"
/note="Charges one glutamine molecule and pairs it to its
corresponding RNA trinucleotide during protein
translation"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_187764.1"
/db_xref="GI:57866105"
/db_xref="GeneID:3241301"
/translation="MSERIRVRYAPSPTGYLHIGNARTALFNYLFAKHYNGDFVVRIE
DTDSKRNLEDGESSQFDNLKWLGLDWDESVDKDKGFGPYRQSERAEIYNPLIQQLLEE
DKAYKCYMTEEELEAEREAQIARGEMPRYGGQHAHLTEEQRQQYEAEGRKPSIRFRVP
KDQTYTFNDMVKGEISFESDNIGDWVIVKKDGVPTYNFAVAVDDHYMQISDVIRGDDH
VSNTPKQLMIYEAFGWEAPRFGHMSLIVNEERKKLSKRDGQILQFIEQYRDLGYLPEA
LFNFITLLGWSPEGEEEIFSKEEFIKIFDEKRLSKSPAMFDRQKLAWVNNQYMKTKDT
ETVFELALPHLIKANLIPENPSEKDREWGRKLIALYQKEMSYAGEIVPLSEMFFHEMP
ELGKDEQEVLQGEQVPELMNHLYGKLESLESFEATEIKKMIKEVQKETGIKGKQLFMP
IRVAVTGQMHGPELPNTIEVLGKDKVLSRLKNLV"
misc_feature 174830..176275
/gene="gltX"
/locus_tag="SERP0168"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:234953"
misc_feature 174842..>175288
/gene="gltX"
/locus_tag="SERP0168"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(174851..174853,174857..174865,174887..174892,
174896..174901,174959..174961,175154..175156,
175160..175162,175202..175207,175235..175240)
/gene="gltX"
/locus_tag="SERP0168"
/note="active site"
/db_xref="CDD:173905"
misc_feature 174881..174892
/gene="gltX"
/locus_tag="SERP0168"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature <175394..175822
/gene="gltX"
/locus_tag="SERP0168"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(175415..175417,175427..175429,175469..175474,
175478..175483,175556..175561,175583..175588)
/gene="gltX"
/locus_tag="SERP0168"
/note="active site"
/db_xref="CDD:173905"
misc_feature 175583..175597
/gene="gltX"
/locus_tag="SERP0168"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene 176657..177298
/gene="cysE"
/locus_tag="SERP0169"
/db_xref="GeneID:3241302"
CDS 176657..177298
/gene="cysE"
/locus_tag="SERP0169"
/EC_number="2.3.1.30"
/note="identified by match to protein family HMM PF00132;
match to protein family HMM TIGR01172"
/codon_start=1
/transl_table=11
/product="serine acetyltransferase"
/protein_id="YP_187765.1"
/db_xref="GI:57866106"
/db_xref="GeneID:3241302"
/translation="MLKRMRDDIKMVFEQDPAARSTLEVITTYAGLHAVWSHLIAHKL
YKNRRYVAARMISQLSRFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQ
GVTLGGTGKEKGKRHPDIGDNVLIAAGSKILGNIKIESNVNIGANSVVLQSVPSYTTV
VGIPGHIVKQEGRRIGKTFDHRNLPDPLYEQIKHLERQLEKAKNGEIQDDYII"
misc_feature 176657..177235
/gene="cysE"
/locus_tag="SERP0169"
/note="Serine acetyltransferase [Amino acid transport and
metabolism]; Region: CysE; COG1045"
/db_xref="CDD:223975"
misc_feature 176846..177148
/gene="cysE"
/locus_tag="SERP0169"
/note="Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl group
of L-serine to form O-acetylserine, as the first step of a
two-step biosynthetic pathway in bacteria and plants
leading to the formation of...; Region: LbH_SAT; cd03354"
/db_xref="CDD:100045"
misc_feature order(176849..176851,176855..176857,176900..176902,
177002..177004,177092..177094,177101..177103,
177107..177109)
/gene="cysE"
/locus_tag="SERP0169"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100045"
misc_feature order(176897..176902,176957..176962,176978..176983,
177002..177007,177038..177040,177083..177085,
177089..177094,177101..177103,177107..177109,
177131..177133,177146..177148)
/gene="cysE"
/locus_tag="SERP0169"
/note="active site"
/db_xref="CDD:100045"
misc_feature order(176897..176902,176978..176980,177002..177007)
/gene="cysE"
/locus_tag="SERP0169"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100045"
misc_feature order(176957..176962,176978..176983,177038..177040,
177083..177085,177089..177094,177101..177103,
177107..177109,177131..177133,177146..177148)
/gene="cysE"
/locus_tag="SERP0169"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100045"
gene 177282..178682
/gene="cysS"
/locus_tag="SERP0170"
/db_xref="GeneID:3241303"
CDS 177282..178682
/gene="cysS"
/locus_tag="SERP0170"
/EC_number="6.1.1.16"
/note="catalyzes a two-step reaction; charges a cysteine
by linking its carboxyl group to the alpha-phosphate of
ATP then transfers the aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="cysteinyl-tRNA synthetase"
/protein_id="YP_187766.1"
/db_xref="GI:57866107"
/db_xref="GeneID:3241303"
/translation="MITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPA
INYDVVRRYFEYKGYEVIYVSNFTDVDDKLINRSKELNESVPEIAEKYIKAFYEDVGA
LNVKKATSNPRVMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLD
DLKVGARIEAGEQKEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGS
TIDIHAGGSDLQFPHHENEIAQSEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILV
HDIIKEVDPDVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIASD
LEEQSEYIQQIDKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNR
FKEVYSIFSDVLGVPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKAR
HIILEDTPQGVRFKRG"
misc_feature 177282..178679
/gene="cysS"
/locus_tag="SERP0170"
/note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
PRK00260"
/db_xref="CDD:178951"
misc_feature 177288..>177629
/gene="cysS"
/locus_tag="SERP0170"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature order(177363..177374,177390..177392,177396..177401,
177408..177413,177477..177479,177483..177485,
177624..177626)
/gene="cysS"
/locus_tag="SERP0170"
/note="active site"
/db_xref="CDD:173899"
misc_feature 177390..177401
/gene="cysS"
/locus_tag="SERP0170"
/note="HIGH motif; other site"
/db_xref="CDD:173899"
misc_feature <177891..178193
/gene="cysS"
/locus_tag="SERP0170"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature 178074..178088
/gene="cysS"
/locus_tag="SERP0170"
/note="KMSKS motif; other site"
/db_xref="CDD:173899"
misc_feature 178191..178661
/gene="cysS"
/locus_tag="SERP0170"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:212339"
misc_feature order(178209..178211,178218..178220,178227..178229,
178248..178253,178257..178262,178380..178382,
178401..178403,178410..178412,178419..178421)
/gene="cysS"
/locus_tag="SERP0170"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature order(178227..178229,178245..178250,178257..178262,
178419..178421)
/gene="cysS"
/locus_tag="SERP0170"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 178675..179073
/locus_tag="SERP0171"
/db_xref="GeneID:3241807"
CDS 178675..179073
/locus_tag="SERP0171"
/note="identified by similarity to GP:14246298"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187767.1"
/db_xref="GI:57866116"
/db_xref="GeneID:3241807"
/translation="MAKHMNVKLLNPLTLAYMGDAVLDQHVREYIVLKLQSKPHRLHQ
VSKSYVSAKSQAKTLEYLLDIDWFTEEELSVLKRGRNAKSYTKAKNTDIQTYRKSSAL
EAVIGFLYLDHQSERLENLLETIVRIVDER"
misc_feature 178690..179043
/locus_tag="SERP0171"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:29697"
misc_feature order(178711..178716,178723..178728,178735..178737,
178744..178749,178756..178761,178765..178773,
178798..178800,179002..179004,179029..179031)
/locus_tag="SERP0171"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29697"
misc_feature order(178711..178713,178720..178722,178732..178734,
178972..178974,178981..178983)
/locus_tag="SERP0171"
/note="active site"
/db_xref="CDD:29697"
misc_feature order(178720..178722,178972..178974,178981..178983)
/locus_tag="SERP0171"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29697"
gene 179081..179830
/locus_tag="SERP0172"
/db_xref="GeneID:3241808"
CDS 179081..179830
/locus_tag="SERP0172"
/note="identified by match to protein family HMM PF00588;
match to protein family HMM TIGR00186"
/codon_start=1
/transl_table=11
/product="RNA methyltransferase"
/protein_id="YP_187768.1"
/db_xref="GI:57866117"
/db_xref="GeneID:3241808"
/translation="MEDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAK
SQKLIVQTVPKSKLDFLANAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDG
LEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKT
IDELKDNGFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPM
VGHVNSLNASVAASLMMYEVYRKRHQLEEKS"
misc_feature 179093..179806
/locus_tag="SERP0172"
/note="rRNA methylase, putative, group 3; Region:
rRNA_methyl_3; TIGR00186"
/db_xref="CDD:129290"
misc_feature 179093..179311
/locus_tag="SERP0172"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; pfam08032"
/db_xref="CDD:203842"
misc_feature 179363..179788
/locus_tag="SERP0172"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:201328"
gene 179827..180354
/locus_tag="SERP0173"
/db_xref="GeneID:3241809"
CDS 179827..180354
/locus_tag="SERP0173"
/note="identified by similarity to OMNI:SA0579"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187769.1"
/db_xref="GI:57866118"
/db_xref="GeneID:3241809"
/translation="MKKRYLIIDGYNMIGQSSTLSTVAKENLEEAREQLLDTIANYNA
LIADEIVCVFDAYEQSGIEREYFYHGVKTIFTKEKETADSFIERYVYELYNKHTTHIT
VVTSDMSEQHAIFGSGAYRISSREMWRELKENEVVVNKSLDDFSEKKPRIRIPLSNEI
LEEFEKIRRGNQKKD"
misc_feature 179827..180336
/locus_tag="SERP0173"
/note="YacP-like NYN domain; Region: NYN_YacP; cl01491"
/db_xref="CDD:242532"
gene 180424..180999
/locus_tag="SERP0174"
/db_xref="GeneID:3241810"
CDS 180424..180999
/locus_tag="SERP0174"
/note="identified by similarity to EGAD:108360; match to
protein family HMM PF04542"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor sigW"
/protein_id="YP_187770.1"
/db_xref="GI:57866119"
/db_xref="GeneID:3241810"
/translation="MNLNKQQHEYTALCLSQTENKSSEELFESLIEELKPLIYNKIRY
ISHNKYDIEDMYQEIVIKFYRALQKFDYQQGVPIEHYIYFLIRSVKYDYLRKVKANYK
RQPLLVNEYIVEYNATLALNDIERSIIRKELTLAFKRSEVKLSRMERRIIRLLLNDYK
PKEIAMVLNLESKVVYNAIQRSKCKLKRSFE"
misc_feature 180526..180987
/locus_tag="SERP0174"
/note="RNA polymerase sigma factor, sigma-70 family;
Region: sigma70-ECF; TIGR02937"
/db_xref="CDD:234065"
misc_feature 180526..180711
/locus_tag="SERP0174"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
gene 181123..181266
/gene="rpmG"
/locus_tag="SERP0175"
/db_xref="GeneID:3240442"
CDS 181123..181266
/gene="rpmG"
/locus_tag="SERP0175"
/note="in Escherichia coli BM108, a mutation that results
in lack of L33 synthesis had no effect on ribosome
synthesis or function; there are paralogous genes in
several bacterial genomes, and a CXXC motif for zinc
binding and an upstream regulation region of the paralog
lacking this motif that are regulated by zinc similar to
other ribosomal proteins like L31; the proteins in this
group have the CXXC motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="YP_187771.1"
/db_xref="GI:57867842"
/db_xref="GeneID:3240442"
/translation="MKKVPLNCENCGNRNYNVPKKEGSATRLTLKKYCPRCNAHTVHK
ESK"
misc_feature 181123..181263
/gene="rpmG"
/locus_tag="SERP0175"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00504"
/db_xref="CDD:179049"
gene 181329..181511
/gene="secE"
/locus_tag="SERP0176"
/db_xref="GeneID:3241811"
CDS 181329..181511
/gene="secE"
/locus_tag="SERP0176"
/note="forms a complex with SecY and SecG; SecYEG forms a
protein-conducting channel to which secA binds and
translocates targeted polypeptides across the cytoplasmic
membrane, a process driven by ATP and a proton-motive
force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_187772.1"
/db_xref="GI:57866120"
/db_xref="GeneID:3241811"
/translation="MAKKESFFKGVKSEMEKTSWPTKEELFKYTIIVVSTVIFFLVFF
YALDIGINALKQLFLG"
misc_feature 181329..181502
/gene="secE"
/locus_tag="SERP0176"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:236066"
gene 181522..182070
/gene="nusG"
/locus_tag="SERP0177"
/db_xref="GeneID:3241812"
CDS 181522..182070
/gene="nusG"
/locus_tag="SERP0177"
/note="identified by similarity to EGAD:9622; match to
protein family HMM PF00467; match to protein family HMM
PF02357; match to protein family HMM TIGR00922"
/codon_start=1
/transl_table=11
/product="transcription termination/antitermination factor
NusG"
/protein_id="YP_187773.1"
/db_xref="GI:57866121"
/db_xref="GeneID:3241812"
/translation="MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVV
IPEEEETQVKDGKAKKLVKKTFPGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSK
PNPLLPEEVRFILKQMGLKEKTIDVELDVGEQVRIQSGPFANQIGEVQEIEADKFKLT
VLVDMFGRETPVEVEFDQIEKL"
misc_feature 181540..182067
/gene="nusG"
/locus_tag="SERP0177"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 181546..181875
/gene="nusG"
/locus_tag="SERP0177"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(181555..181557,181657..181659,181717..181719,
181726..181728,181732..181734,181837..181839,
181861..181863)
/gene="nusG"
/locus_tag="SERP0177"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 181897..182064
/gene="nusG"
/locus_tag="SERP0177"
/note="NusG contains an NGN domain at its N-terminus and
KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
/db_xref="CDD:240515"
misc_feature order(181933..181947,181954..181956,181990..181992,
182017..182025,182029..182040,182050..182055)
/gene="nusG"
/locus_tag="SERP0177"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
misc_feature 181933..181944
/gene="nusG"
/locus_tag="SERP0177"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
gene 182402..182824
/gene="rplK"
/locus_tag="SERP0178"
/db_xref="GeneID:3242984"
CDS 182402..182824
/gene="rplK"
/locus_tag="SERP0178"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_187774.1"
/db_xref="GI:57866122"
/db_xref="GeneID:3242984"
/translation="MAKKVEKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA
RTQEQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGVEKGSGEPNKTKVATVTK
DQVREIAQTKMQDLNAADEEAAMRIIEGTARSMGITVQ"
misc_feature 182402..182818
/gene="rplK"
/locus_tag="SERP0178"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:234661"
misc_feature 182426..182818
/gene="rplK"
/locus_tag="SERP0178"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(182429..182431,182489..182491,182621..182629,
182639..182641,182660..182662,182735..182737,
182750..182758,182768..182770,182777..182782,
182789..182794,182798..182806)
/gene="rplK"
/locus_tag="SERP0178"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(182429..182431,182570..182572,182576..182587,
182597..182599,182603..182608,182738..182743,
182750..182755)
/gene="rplK"
/locus_tag="SERP0178"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(182477..182479,182489..182491)
/gene="rplK"
/locus_tag="SERP0178"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(182678..182680,182687..182689)
/gene="rplK"
/locus_tag="SERP0178"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 183037..183732
/gene="rplA"
/locus_tag="SERP0179"
/db_xref="GeneID:3242992"
CDS 183037..183732
/gene="rplA"
/locus_tag="SERP0179"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_187775.1"
/db_xref="GI:57866130"
/db_xref="GeneID:3242992"
/translation="MAKKGKKYQEAASKVDRTQYYSVEEAIKLAKETSVANFDASVEV
AFRLGIDTRKNDQQIRGAVVLPHGTGKSQRVLVFAKGDKITEAEEAGADYVGEADYVQ
KIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGK
VEYRAEKAGIVHASIGKVSFDEEKLVDNFRTLQDVLAKAKPASAKGTYFKSVAVTTTM
GPGVKVDTSSFKL"
misc_feature 183103..183708
/gene="rplA"
/locus_tag="SERP0179"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:238235"
misc_feature order(183142..183150,183157..183159,183163..183165,
183169..183171,183175..183177,183538..183540,
183544..183546,183550..183552,183688..183693,
183697..183699)
/gene="rplA"
/locus_tag="SERP0179"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238235"
gene 184007..184507
/gene="rplJ"
/locus_tag="SERP0180"
/db_xref="GeneID:3242993"
CDS 184007..184507
/gene="rplJ"
/locus_tag="SERP0180"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_187776.1"
/db_xref="GI:57866131"
/db_xref="GeneID:3242993"
/translation="MSAIIEAKKQQVDTIAEQLKNSVSTVIVDYRGLTVAEVTELRSQ
LREAGVEYKVYKNTMVRRAAEQAGIEGLDEFLTGPTAIATSTEDVVAPAKVIAGFAKE
HEALEVKTGVMEGNVISAEEVKTVGSLPSHDGLVSMLLSVLQAPVRNFAYAVKAVGEQ
KEESAE"
misc_feature 184016..184486
/gene="rplJ"
/locus_tag="SERP0180"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:240223"
misc_feature order(184028..184033,184040..184042,184172..184183,
184190..184192)
/gene="rplJ"
/locus_tag="SERP0180"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:240223"
misc_feature order(184274..184276,184343..184345,184352..184354,
184400..184402,184409..184414,184421..184426,
184430..184447,184451..184459,184466..184471,
184475..184480,184484..184486)
/gene="rplJ"
/locus_tag="SERP0180"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:240223"
gene 184545..184913
/gene="rplL"
/locus_tag="SERP0181"
/db_xref="GeneID:3241171"
CDS 184545..184913
/gene="rplL"
/locus_tag="SERP0181"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_187777.1"
/db_xref="GI:57866132"
/db_xref="GeneID:3241171"
/translation="MANQEQIIEAIKEMSVLELNDLVKAIEEEFGVTAAAPVAAAGAA
GGGDAAAEKTEFDVELTSAGSSKIKVVKAVKEATGLGLKDAKELVDGAPKVIKEAMPK
EDAEKLKEQLEEVGASVELK"
misc_feature 184557..184907
/gene="rplL"
/locus_tag="SERP0181"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(184557..184559,184566..184568,184578..184580,
184617..184619,184632..184634)
/gene="rplL"
/locus_tag="SERP0181"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(184587..184595,184602..184607,184614..184616,
184623..184625,184668..184670,184677..184682,
184686..184694,184704..184709,184770..184772,
184776..184781,184785..184787,184791..184796,
184836..184841,184845..184847,184854..184856)
/gene="rplL"
/locus_tag="SERP0181"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(184599..184601,184608..184613,184623..184625,
184632..184634)
/gene="rplL"
/locus_tag="SERP0181"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(184743..184748,184755..184760,184767..184769,
184788..184793,184800..184802)
/gene="rplL"
/locus_tag="SERP0181"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(184746..184748,184758..184760,184767..184769,
184788..184793,184800..184802)
/gene="rplL"
/locus_tag="SERP0181"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(184746..184748,184755..184760,184767..184769)
/gene="rplL"
/locus_tag="SERP0181"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 185105..185713
/locus_tag="SERP0182"
/db_xref="GeneID:3241172"
CDS 185105..185713
/locus_tag="SERP0182"
/note="identified by similarity to EGAD:35187; match to
protein family HMM PF05175"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187778.1"
/db_xref="GI:57866133"
/db_xref="GeneID:3241172"
/translation="MSHYYDEQPDVKSNPKRISYQIKNAQLELTTDAGVFSKDNVDFG
SDLLIKTFLKEHPPGPSKTIADVGCGYGPIGLAIGKVSPHHQITMLDINNRALALAEM
NKTKNQVDNVTIIESDCLSAVNHQCFDYILTNPPIRAGKDIVHRIFEQAFDRLKTTGE
LYVVIQKKQGMPSAKKKIEELFGNVEIIAKSKGYYILKSIKG"
misc_feature 185276..185689
/locus_tag="SERP0182"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature 185291..185599
/locus_tag="SERP0182"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(185303..185323,185375..185380,185453..185461,
185504..185506)
/locus_tag="SERP0182"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 185929..189480
/gene="rpoB"
/locus_tag="SERP0183"
/db_xref="GeneID:3241173"
CDS 185929..189480
/gene="rpoB"
/locus_tag="SERP0183"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_187779.1"
/db_xref="GI:57866134"
/db_xref="GeneID:3241173"
/translation="MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEG
LLEMFRDISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKE
TGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDA
TIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGDSEYLR
NTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKAN
KKLHLKHRLFNQKLAEPIVNSETGEIVVDEGTVLDRRKLDEIMDVLETNANSEVFELE
GSVIDEPVEIQSIKVYVPNDEEGRTTTVIGNALPDSEVKCITPADIVASMSYFFNLLN
GIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINI
RPVIASIKEFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQMEVRDVHYS
HYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTNSITDQIDYLTAD
EEDSYVVAQANSRLDENGRFLDDEVVCRFRGNNTVMAKEKMDYMDVSPKQVVSAATAC
IPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAKHRGRVE
HVESNEILVRRLVEENGTEHEGELDRYPLAKFKRSNSGTCYNQRPIVSIGDVVEYNEI
LADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEA
RDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDILVGKVTPKGVTELTAE
ERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIV
QKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVL
ELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRI
SVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
AYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGLDVKVMD
EHDNEIEMADVDDEDAAERKVDLQQKSAPESQKETTD"
misc_feature 185935..189378
/gene="rpoB"
/locus_tag="SERP0183"
/note="DNA-directed RNA polymerase subunit beta; Reviewed;
Region: rpoB; PRK00405"
/db_xref="CDD:179007"
misc_feature 186013..>186495
/gene="rpoB"
/locus_tag="SERP0183"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature 186346..186846
/gene="rpoB"
/locus_tag="SERP0183"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:203048"
misc_feature <187063..>187596
/gene="rpoB"
/locus_tag="SERP0183"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature 187564..187767
/gene="rpoB"
/locus_tag="SERP0183"
/note="RNA polymerase beta subunit external 1 domain;
Region: RNA_pol_Rpb2_45; pfam10385"
/db_xref="CDD:204469"
misc_feature <187738..>188301
/gene="rpoB"
/locus_tag="SERP0183"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature order(187966..187968,188098..188100,188104..188106,
188116..188124,188128..188130)
/gene="rpoB"
/locus_tag="SERP0183"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature <188095..189363
/gene="rpoB"
/locus_tag="SERP0183"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(188101..188106,188197..188199,188203..188205,
188266..188268,188275..188277,188749..188751,
188788..188790,188869..188874,188878..188880,
188971..188973,189022..189024)
/gene="rpoB"
/locus_tag="SERP0183"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(188212..188223,188230..188232,188236..188244,
188722..188724,188728..188730,188734..188736,
188800..188802,188806..188808,188815..188817,
188824..188826,188839..188841,188851..188853,
188902..188904,188983..188985,189007..189015,
189019..189021,189058..189060,189067..189075,
189079..189084,189145..189153,189163..189165,
189169..189174,189178..189180,189184..189201,
189205..189222,189232..189234,189301..189303,
189313..189315,189319..189321,189325..189330,
189334..189336,189340..189351,189355..189357,
189361..189363)
/gene="rpoB"
/locus_tag="SERP0183"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(188230..188232,188272..188274,188746..188748,
188989..188991)
/gene="rpoB"
/locus_tag="SERP0183"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(188272..188277,188287..188289,188668..188670,
188674..188676,188749..188757,188764..188766,
188770..188775,188986..189009,189013..189015)
/gene="rpoB"
/locus_tag="SERP0183"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(188287..188289,188398..188400,188404..188406,
188416..188424,188428..188430)
/gene="rpoB"
/locus_tag="SERP0183"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 189612..193235
/gene="rpoC"
/locus_tag="SERP0184"
/db_xref="GeneID:3241174"
CDS 189612..193235
/gene="rpoC"
/locus_tag="SERP0184"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_187780.1"
/db_xref="GI:57866135"
/db_xref="GeneID:3241174"
/translation="MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKD
GLFCERIFGPTKDWECSCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVS
HIWYFKGIPSRMGLLLDMSPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFREYYD
KYPNQFVAKMGAEGIKDLLEEIDLDEELKELRDELESATGQRLTRAIKRLEVVESFRN
SGNNPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGA
PGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK
RVDYSGRSVIAVGPSLKMYQCGLPKEMALELFKPFVMKELVQREIATNIKNAKSKIER
MDDEVWDVLEDVITEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVTTAYNADF
DGDQMAVHVPLSKEAQAEARMLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERKD
AVNTGAIFNDTNEVLKAYANGYVHLHTRIGVHANSFNNPTFTDEQNSKILATSVGKII
FNEIIPDSFAYINEPSQANLERTTPDKYFVDPTQLGEGGLKEYFDNTELIEPFNKKFL
GNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGITVGVSDIVVLPDKQDILDEHEK
LVERVTKQYNRGLITEDERYNAVVEIWTDAKDQIQGELMQSLEKTNPIFMMSDSGARG
NASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARKGLADTALKT
ADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFIERIEGRYSKETI
RHPETDEVIIRPDELITPDIAKQITDAGIEQMYIRSAFTCNTRHGVCEKCYGKNLATG
EKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNPKGQ
AVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASGTSRLKVEIGQSVERGEVLTE
GSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAG
DTKLLPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGITKASLETESFLSAASFQET
TRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDIQYDKATAPVTETSEEVE
TIE"
misc_feature 189618..193181
/gene="rpoC"
/locus_tag="SERP0184"
/note="DNA-directed RNA polymerase subunit beta';
Provisional; Region: PRK00566"
/db_xref="CDD:179068"
misc_feature 189624..190604
/gene="rpoC"
/locus_tag="SERP0184"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 190281..191111
/gene="rpoC"
/locus_tag="SERP0184"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 191043..191612
/gene="rpoC"
/locus_tag="SERP0184"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 191697..191927
/gene="rpoC"
/locus_tag="SERP0184"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 192357..193154
/gene="rpoC"
/locus_tag="SERP0184"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(192363..192368,192372..192374,193146..193148)
/gene="rpoC"
/locus_tag="SERP0184"
/note="Rpb1 (beta') - Rpb6 (omega) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
misc_feature order(192384..192386,192396..192398,193086..193088,
193104..193106,193122..193124,193131..193136,
193146..193148)
/gene="rpoC"
/locus_tag="SERP0184"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
misc_feature 192429..192455
/gene="rpoC"
/locus_tag="SERP0184"
/note="G-loop; other site"
/db_xref="CDD:132721"
misc_feature order(192510..192512,192996..192998,193041..193046)
/gene="rpoC"
/locus_tag="SERP0184"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
gene 193563..193823
/locus_tag="SERP0185"
/db_xref="GeneID:3241175"
CDS 193563..193823
/locus_tag="SERP0185"
/note="in Bacillus subtilis this non-essential protein
associates with the ribosome"
/codon_start=1
/transl_table=11
/product="ribosomal protein L7Ae-like"
/protein_id="YP_187781.1"
/db_xref="GI:57866136"
/db_xref="GeneID:3241175"
/translation="MSNEKVARFNKQQYVVGLKETLKALKKGQVTSLIIAQDVEVHLL
TRVLSYINHKNIPVSFFSSQRALGKYVGINVNATIVALISEN"
misc_feature 193563..193814
/locus_tag="SERP0185"
/note="putative ribosomal protein L7Ae-like; Provisional;
Region: PRK13600"
/db_xref="CDD:184172"
gene 193914..194327
/gene="rpsL"
/locus_tag="SERP0186"
/db_xref="GeneID:3241176"
CDS 193914..194327
/gene="rpsL"
/locus_tag="SERP0186"
/note="interacts with and stabilizes bases of the 16S rRNA
that are involved in tRNA selection in the A site and with
the mRNA backbone; located at the interface of the 30S and
50S subunits, it traverses the body of the 30S subunit
contacting proteins on the other side; mutations in the
S12 gene confer streptomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_187782.1"
/db_xref="GI:57866137"
/db_xref="GeneID:3241176"
/translation="MPTINQLVRKPRKSKTKQSDSPALNRGFNSKKKQFTNLNSPQKR
GVCTRVGTMTPKKPNSALRKYARVRLSNNIEVNAYIPGIGHNLQEHSVVLVRGGRVKD
LPGVRYHIVRGALDTSGVDGRRQGRSLYGTKKPKN"
misc_feature 193920..194282
/gene="rpsL"
/locus_tag="SERP0186"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:239466"
misc_feature order(193923..193928,193932..193937,193944..193949)
/gene="rpsL"
/locus_tag="SERP0186"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:239466"
misc_feature 193923..193925
/gene="rpsL"
/locus_tag="SERP0186"
/note="S8 interaction site; other site"
/db_xref="CDD:239466"
misc_feature order(193947..193955,193989..193991,194034..194039,
194043..194045,194088..194093,194097..194105,
194124..194126,194148..194150,194157..194162,
194199..194204,194214..194219,194280..194282)
/gene="rpsL"
/locus_tag="SERP0186"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(194079..194084,194214..194216)
/gene="rpsL"
/locus_tag="SERP0186"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:239466"
misc_feature 194082..194087
/gene="rpsL"
/locus_tag="SERP0186"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(194085..194102,194160..194186)
/gene="rpsL"
/locus_tag="SERP0186"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:239466"
gene 194398..194868
/gene="rpsG"
/locus_tag="SERP0187"
/db_xref="GeneID:3241361"
CDS 194398..194868
/gene="rpsG"
/locus_tag="SERP0187"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_187783.1"
/db_xref="GI:57866146"
/db_xref="GeneID:3241361"
/translation="MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILY
SAFDLVEQRSGRDALEVFEEAINNIMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLR
WLVNYARLRGEKTMEDRLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW"
misc_feature 194398..194865
/gene="rpsG"
/locus_tag="SERP0187"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:235398"
gene 194988..197069
/gene="fusA"
/locus_tag="SERP0188"
/db_xref="GeneID:3241362"
CDS 194988..197069
/gene="fusA"
/locus_tag="SERP0188"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_187784.1"
/db_xref="GI:57866147"
/db_xref="GeneID:3241362"
/translation="MARDFSLKNTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH
EGASQMDWMEQEQDRGITITSAATTAQWQGHRVNIIDTPGHVDFTVEVERSLRVLDGA
VTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAA
PIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIDEIEIPEDHKERAEEARAQLIEAV
AENNDDLMEKYLGDEEISVDELKDAIRQATTDVEFYPVLCGTAFKNKGVQLMLNAVID
YLPSPLDVKPIIGHRANNPDEEVVAKPDDSAEFAALAFKVMTDPYVGKLTFFRVYSGT
LSSGSYVKNSSKDKRERVGRLLQMHANSRQEIDTVYSGEIAAAVGLKETGTGDTLCGE
KNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVII
GGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKQPAQVQGKFSRQSGGRGQYGD
VHIEFTPNETGGGFEFENAIVGGVVPREYIPSVEQGLKDAMENGVLAGYPLIDVKAKL
FDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVT
ARRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSI
AEEIIKKNKGE"
misc_feature 194988..197063
/gene="fusA"
/locus_tag="SERP0188"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:234569"
misc_feature 195021..195830
/gene="fusA"
/locus_tag="SERP0188"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 195036..195059
/gene="fusA"
/locus_tag="SERP0188"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(195039..195041,195045..195047,195057..195062,
195069..195071,195078..195083,195183..195188,
195240..195245,195312..195317,195423..195425,
195435..195437)
/gene="fusA"
/locus_tag="SERP0188"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(195045..195047,195051..195062,195390..195395,
195399..195401,195765..195773)
/gene="fusA"
/locus_tag="SERP0188"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 195126..195185
/gene="fusA"
/locus_tag="SERP0188"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 195171..195173
/gene="fusA"
/locus_tag="SERP0188"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 195228..195239
/gene="fusA"
/locus_tag="SERP0188"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 195234..195290
/gene="fusA"
/locus_tag="SERP0188"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 195390..195401
/gene="fusA"
/locus_tag="SERP0188"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 195765..195773
/gene="fusA"
/locus_tag="SERP0188"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 195912..196157
/gene="fusA"
/locus_tag="SERP0188"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:239755"
misc_feature 196431..196730
/gene="fusA"
/locus_tag="SERP0188"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:238715"
misc_feature 196791..197024
/gene="fusA"
/locus_tag="SERP0188"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:239683"
gene 197288..198472
/gene="tuf"
/locus_tag="SERP0189"
/db_xref="GeneID:3241363"
CDS 197288..198472
/gene="tuf"
/locus_tag="SERP0189"
/EC_number="3.6.5.3"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_187785.1"
/db_xref="GI:57866148"
/db_xref="GeneID:3241363"
/translation="MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDTVA
QSYDMIDNAPEEKERGITINTAHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGG
ILVVSAADGPMPQTREHILLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSE
YDFPGDDVPVIAGSALKALEGDAEYEQKILDLMQAVDDYIPTPERDSDKPFMMPVEDV
FSITGRGTVATGRVERGQIKVGEEVEIIGMHETSKTTVTGVEMFRKLLDYAEAGDNIG
ALLRGVAREDVQRGQVLAAPGSITPHTKFKAEVYVLSKDEGGRHTPFFTNYRPQFYFR
TTDVTGVVNLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEI
FE"
misc_feature 197288..198469
/gene="tuf"
/locus_tag="SERP0189"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:234596"
misc_feature 197321..197896
/gene="tuf"
/locus_tag="SERP0189"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 197342..197365
/gene="tuf"
/locus_tag="SERP0189"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(197345..197347,197351..197353,197363..197368,
197375..197377,197384..197389,197399..197401,
197483..197488,197540..197545,197612..197617,
197621..197632,197639..197641,197732..197734,
197744..197746,197822..197827)
/gene="tuf"
/locus_tag="SERP0189"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(197351..197368,197426..197428,197693..197698,
197702..197704,197807..197815)
/gene="tuf"
/locus_tag="SERP0189"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 197453..197485
/gene="tuf"
/locus_tag="SERP0189"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 197471..197473
/gene="tuf"
/locus_tag="SERP0189"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 197528..197539
/gene="tuf"
/locus_tag="SERP0189"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 197534..197590
/gene="tuf"
/locus_tag="SERP0189"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 197693..197704
/gene="tuf"
/locus_tag="SERP0189"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 197807..197815
/gene="tuf"
/locus_tag="SERP0189"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 197918..198178
/gene="tuf"
/locus_tag="SERP0189"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:239668"
misc_feature 198185..198454
/gene="tuf"
/locus_tag="SERP0189"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:239678"
misc_feature order(198221..198223,198227..198235,198287..198289,
198407..198415,198443..198445)
/gene="tuf"
/locus_tag="SERP0189"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:239678"
gene complement(198598..199767)
/locus_tag="SERP0190"
/db_xref="GeneID:3241364"
CDS complement(198598..199767)
/locus_tag="SERP0190"
/note="identified by match to protein family HMM PF01546;
match to protein family HMM TIGR01891"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="YP_187786.1"
/db_xref="GI:57866149"
/db_xref="GeneID:3241364"
/translation="MFDWFQLASNKEKRMVQLRRYLHQYPELSFEEKRTHDFIVNQLS
QLACTIETPVGRNGIKATFKGSDSNGPTIALRADFDALPVQELNDVPYRSKNKGCMHA
CGHDGHTAILLGVAEIVHEHRHLLKGNVVFIFQYGEEIMPGGSQEMIDDGCLQNVDKI
YGTHLWSGYPSGTIYSRPGAIMASPDEFSVTIYGKGGHGAKPHETIDPIVIMAEFILS
AQKIISRTIDPVKEAVLTFGMIQAGSTDSVIPDTAFCKGTVRTFDTKLQSHVQNKMDK
LLQGLSLSNDITYELEYIKGYLPVHNHQQSYDVVKQAANDLHLRFNESDLMMIGEDFS
HYLKVRPGAFFLTGCGNKDKGITAPHHNPHFDIDESSLKYAASEFLKILEIENVF"
misc_feature complement(198616..199761)
/locus_tag="SERP0190"
/note="Metal-dependent
amidase/aminoacylase/carboxypeptidase [General function
prediction only]; Region: AbgB; COG1473"
/db_xref="CDD:31662"
misc_feature complement(198616..199725)
/locus_tag="SERP0190"
/note="M20 Peptidase Aminoacylase 1 family; Region:
M20_Acy1; cd03886"
/db_xref="CDD:193507"
misc_feature complement(order(198685..198687,199276..199278,
199351..199353,199453..199455,199459..199461))
/locus_tag="SERP0190"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193507"
misc_feature complement(order(198994..199002,199018..199020,
199024..199029,199039..199059,199108..199110,
199117..199119,199126..199128,199138..199143,
199207..199209))
/locus_tag="SERP0190"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193507"
gene 200341..200850
/locus_tag="SERP0191"
/db_xref="GeneID:3241365"
CDS 200341..200850
/locus_tag="SERP0191"
/note="identified by match to protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_187787.1"
/db_xref="GI:57866150"
/db_xref="GeneID:3241365"
/translation="MEEIRPITYQDKEAYYYYIQEWYENEEKVVPGNTDIANYSSFNN
MVDRLNCSEVDEGFVPTTTLFYFKDSIIIGAVDIRHQLNDKLSNIGGHVGYGVAKSYR
GKGYATILLEKALDELKTLNVEVVLMTCNPLNFASQTVMKKCGGYQIESYIKKNGKPV
HRYHIPNTK"
misc_feature 200350..200775
/locus_tag="SERP0191"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:222034"
misc_feature 200530..200718
/locus_tag="SERP0191"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(200626..200631,200659..200664)
/locus_tag="SERP0191"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 201102..202052
/locus_tag="SERP0192"
/db_xref="GeneID:3241366"
CDS 201102..202052
/locus_tag="SERP0192"
/EC_number="4.3.1.12"
/note="catalyzes the formation of L-proline from
L-ornithine"
/codon_start=1
/transl_table=11
/product="ornithine cyclodeaminase"
/protein_id="YP_187788.1"
/db_xref="GI:57866151"
/db_xref="GeneID:3241366"
/translation="MKYIDEQTQAQLLDMNEVILEVEKALQAFSENKTITPLRYVLPF
NEQNRYLVMPALSDELNIVGLKTVSFAPENSKKGKATITGSVILSDYETGETLSILDG
GFLTKVRTGAISGVATKYLAKENAKTLSVIGAGVQAEGLIEAILAVRDIEKIHIASRT
FEKAEKFAQNIRNRFNIKVSVFRSADEAIDSADIVVTATNANQPVYTHSLHPGVHLNA
VGSFKPDMQEIPSETMLVANKIVVESMEAALEETGDLKIPQAEGILTKNMLHSELGDI
ISGEKVGRETEEEVTVFKSVGLAIVDIIVAQYFYKKLIQS"
misc_feature 201102..202049
/locus_tag="SERP0192"
/note="ornithine cyclodeaminase; Validated; Region:
PRK08618"
/db_xref="CDD:236313"
misc_feature 201102..202040
/locus_tag="SERP0192"
/note="ornithine cyclodeaminase; Validated; Region:
PRK06823; cl17400"
/db_xref="CDD:247954"
gene complement(202140..202349)
/locus_tag="SERP0193"
/db_xref="GeneID:3241367"
CDS complement(202140..202349)
/locus_tag="SERP0193"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187789.1"
/db_xref="GI:57866152"
/db_xref="GeneID:3241367"
/translation="MKRSSYLRRQSNLIISMIIFVIFLIVDINVLINKHQVVPVLLSS
ISLIIFIMLFVVALFKCITNYKHQS"
gene 202608..203564
/locus_tag="SERP0194"
/db_xref="GeneID:3242802"
CDS 202608..203564
/locus_tag="SERP0194"
/note="identified by similarity to EGAD:99035"
/codon_start=1
/transl_table=11
/product="UDP-glucose 4-epimerase"
/protein_id="YP_187790.1"
/db_xref="GI:57866153"
/db_xref="GeneID:3242802"
/translation="MKKIIITGALGQIGTELVIKCRERYGTENVLATDIRKPEPHSPV
KNGPFEILDVTDRNRLFETVRYFNADTLMHMAALLSATAEKKPLVAWDLNMGGLINTL
EAARRYQLKYFTPSSIGAFGISTPKVNTPQLTIQQPTTMYGINKVTGELLCQYYYVKF
GVDTRSVRFPGLISHVKEPGGGITDYAVDMYFKAVRKGHYTSYINRYTYMDMMYMEDA
IDAIIKLMEEDSVKLKTRNGYNLSAMSIEPEMLKQAIQVYYPDFTLDYDIDLERQDIA
LSWPDSIDTSCAQEEWGFDPKYDLPTMTKVMLEAIEKKQKEC"
misc_feature 202611..203558
/locus_tag="SERP0194"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:223528"
misc_feature 202614..203540
/locus_tag="SERP0194"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature order(202629..202631,202635..202640,202644..202646,
202707..202715,202830..202838,202950..202958,
203031..203033,203043..203045,203112..203123)
/locus_tag="SERP0194"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(202887..202889,202956..202958,203031..203033,
203043..203045)
/locus_tag="SERP0194"
/note="active site"
/db_xref="CDD:187535"
gene 204021..205097
/gene="ilvE"
/locus_tag="SERP0195"
/db_xref="GeneID:3242811"
CDS 204021..205097
/gene="ilvE"
/locus_tag="SERP0195"
/EC_number="2.6.1.42"
/note="catalyzes the transamination of the branched-chain
amino acids to their respective alpha-keto acids"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid aminotransferase"
/protein_id="YP_187791.1"
/db_xref="GI:57866162"
/db_xref="GeneID:3242811"
/translation="MSEKVKFEKRESLKEKPDTANLGFGQYFTDYMLSVDYDADQGWH
DMKIVPYAPFEISPAAQGLHYGQAVFEGLKAYKHNGEVVLFRPDQNFKRINNSLARLE
MPEVDEEALLEGLKQLVDVERDWVPEGEGQSLYIRPFVFATEGILGVRSSHQYKLLII
LSPSGAYYGGDTLKSTKIYVEDEYVRAVRGGVGFAKVAGNYAASLLAQTNANKLGYDQ
VLWLDGVEQKYVEEVGSMNIFFVENGKVVTPALNGSILPGITRKSIIQLAEDLGYEVE
ERRVSIEELFNAYDKGELTEVFGSGTAAVISPVGTLRYEDREIVINNNEPGKITQKLY
DTYTGIQSGKLEDKYGWRVEVPKY"
misc_feature 204021..205088
/gene="ilvE"
/locus_tag="SERP0195"
/note="branched-chain amino acid aminotransferase;
Provisional; Region: PRK13357"
/db_xref="CDD:183996"
misc_feature 204183..205049
/gene="ilvE"
/locus_tag="SERP0195"
/note="BCAT_beta_family: Branched-chain aminotransferase
catalyses the transamination of the branched-chain amino
acids leusine, isoleucine and valine to their respective
alpha-keto acids, alpha-ketoisocaproate,
alpha-keto-beta-methylvalerate and...; Region:
BCAT_beta_family; cd01557"
/db_xref="CDD:29568"
misc_feature order(204183..204197,204204..204218,204222..204224,
204228..204230,204318..204320,204429..204431,
204435..204437,204453..204461,204471..204473,
204492..204494,204612..204614,204627..204629,
204633..204635,204645..204647,204687..204689)
/gene="ilvE"
/locus_tag="SERP0195"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29568"
misc_feature order(204213..204215,204228..204230,204297..204299,
204465..204467,204606..204608,204621..204623,
204714..204716,204795..204800,204924..204926)
/gene="ilvE"
/locus_tag="SERP0195"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:29568"
misc_feature 204606..204608
/gene="ilvE"
/locus_tag="SERP0195"
/note="catalytic residue [active]"
/db_xref="CDD:29568"
gene 205369..206085
/gene="ispD"
/locus_tag="SERP0196"
/db_xref="GeneID:3242812"
CDS 205369..206085
/gene="ispD"
/locus_tag="SERP0196"
/EC_number="2.7.7.60"
/note="4-diphosphocytidyl-2C-methyl-D-erythritol synthase;
MEP cytidylyltransferase; MCT; catalyzes the formation of
4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and
2-C-methyl-D-erythritol 4-phosphate; involved in
isoprenoid and isopentenyl-PP biosynthesis; forms
homodimers"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase"
/protein_id="YP_187792.1"
/db_xref="GI:57866163"
/db_xref="GeneID:3242812"
/translation="MIYAGILAGGIGSRMGNVPLPKQFLLLQGKPIIIHTVEKFLMYK
DFDEIIIATPQKWINYMHDLLNNYRLDDKKIKVIQGGDDRNHTIMNIIESIEQHKKLN
DEDIIVTHDAVRPFLTNRIIRENVEYASQYGAVDTVVNAVDTIISSNDAQFISEIPIR
SEMYQGQTPQTFKIKELKDSYLSLTQSQKEILTDACKILVELGKPVKLVKGELFNIKI
TTPYDLKVANSIITGAVDND"
misc_feature 205372..206049
/gene="ispD"
/locus_tag="SERP0196"
/note="CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production; Region:
CDP-ME_synthetase; cd02516"
/db_xref="CDD:133009"
misc_feature order(205387..205389,205393..205410,205432..205434,
205609..205620,205627..205629,205699..205707,
206017..206019)
/gene="ispD"
/locus_tag="SERP0196"
/note="substrate binding site; other site"
/db_xref="CDD:133009"
misc_feature order(205708..205710,205765..205767,205789..205791,
205795..205797,205849..205866,205945..205950,
205954..205959,205966..205968,205981..205992,
206002..206007)
/gene="ispD"
/locus_tag="SERP0196"
/note="dimer interface; other site"
/db_xref="CDD:133009"
gene 206078..207109
/locus_tag="SERP0197"
/db_xref="GeneID:3242813"
CDS 206078..207109
/locus_tag="SERP0197"
/EC_number="1.1.1.1"
/note="identified by match to protein family HMM PF00107"
/codon_start=1
/transl_table=11
/product="alcohol dehydrogenase"
/protein_id="YP_187793.1"
/db_xref="GI:57866164"
/db_xref="GeneID:3242813"
/translation="MINQVYQLVSPRQFEATFKTIDLHNHNSKVIVRPLYLSICAADL
RYYCGNRDSKILSKKLPMSLIHESVGEIVYDSEHRLKNGTKVVMIPNTPSKSHNIIAE
NYLTSSHFKSSGYDGFMQDYIVMKPDRVVTLPQEIDLSVASYTELVTVSVHAIDRFKA
KAIPQFESLGIWGDGNLGYITAVLLKKLYPTTKIIVFGKTLYKLSRFSFVDEIIQIDN
IPQHIKIDHAFECVGGKGSQQAIEQIINIINPEGSIALLGVSELSIQVNTRMVLEKGL
TIIGSSRSGLKDFEKTIELYRKYPEVLNQLALLKGKEFEINTIEDLITAFEYDISNAW
GKTVLKWNI"
misc_feature 206078..207106
/locus_tag="SERP0197"
/note="Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR; cl16912"
/db_xref="CDD:211475"
misc_feature 206081..207100
/locus_tag="SERP0197"
/note="Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only]; Region: Tdh; COG1063"
/db_xref="CDD:31263"
misc_feature order(206195..206203,206210..206212,206513..206515,
206525..206527,206594..206611,206669..206674,
206684..206686,206723..206725,206768..206773,
206846..206851,206918..206926)
/locus_tag="SERP0197"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:176178"
gene 207126..208820
/locus_tag="SERP0198"
/db_xref="GeneID:3242814"
CDS 207126..208820
/locus_tag="SERP0198"
/note="identified by match to protein family HMM PF04464"
/codon_start=1
/transl_table=11
/product="teichoic acid biosynthesis protein"
/protein_id="YP_187794.1"
/db_xref="GI:57866165"
/db_xref="GeneID:3242814"
/translation="MTKQNIFIDDIYWERVQLYVKGHFEGVKPTRNFLLRNLTETKLL
NANRVNIQGSTFEARFNIAILEKGNFLSTGNYILINRQEDEYVCQINPKFLNDKKKQM
TLEELRDYNSLETQSLQKSYLLKNYGKSFQRYNNKEIKSYVIVPAISQEINEFIFKVQ
YKSEINKISKLKHLSFILHKALRKISFNVRDKIYLSIFNISKTVYKNNKNHVLFTSDS
RANMSGNFKFIYEEMLKQQLDKKLVIHSIFKPNIANRRSFIDKLKFPYFLGKSKYILV
DDYHPMIYKLQFRENQEIVQVWHAVGAFKTVGFSRTGKKGGPFIDSIGHRNYSKAYVS
SNNDILYYAEAFGIEEHKVIPTGVPRTDVLFDESYKTRIKQSLETKLPIIKNKKVILF
APTFRGSGHRTAHYPFFKINFARLASYCEEHQATVLFKMHPFVRNKLNIPAIYNKYFL
DISNYREVNDVLFITDILISDYSSLIYEFSVFKKPMLFYAFDLEDYIYTRDFYEPYET
FVPGKIVKTFDELILALENNDFEFEKVKPFLNKNFKYKDGKSSERLVKDLFNKFFQ"
misc_feature 207747..208805
/locus_tag="SERP0198"
/note="CDP-Glycerol:Poly(glycerophosphate)
glycerophosphotransferase; Region: Glyphos_transf;
pfam04464"
/db_xref="CDD:203023"
gene 209189..209884
/locus_tag="SERP0199"
/db_xref="GeneID:3242815"
CDS 209189..209884
/locus_tag="SERP0199"
/note="identified by match to protein family HMM PF00702;
match to protein family HMM TIGR01549"
/codon_start=1
/transl_table=11
/product="HAD superfamily hydrolase"
/protein_id="YP_187795.1"
/db_xref="GI:57866166"
/db_xref="GeneID:3242815"
/translation="MEWILFDKDGTLIEFDSSWEKIGVRLVDQLLETFPVHDKEAAHR
QLGIIDKKIKPDSVMGSGSLGEIIESFNGVTGKETSDWTKDTSQELIDSRVPENNWID
GVQETIQALRNEGYHIGIVTSDTKKGVDQFLEETQTRNLFDLVISTETHAEEKPHPKV
LDPLFNAFDVKPEKVAIVGDTANDMKTAINAHLGLAIGVLTGVAKKEELYDADVIINS
AKDVKQVIEQYGK"
misc_feature 209189..209872
/locus_tag="SERP0199"
/note="Predicted phosphatases [General function prediction
only]; Region: Gph; COG0546"
/db_xref="CDD:30892"
misc_feature 209456..209761
/locus_tag="SERP0199"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 209552..209554
/locus_tag="SERP0199"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(209974..211278)
/locus_tag="SERP0200"
/db_xref="GeneID:3242816"
CDS complement(209974..211278)
/locus_tag="SERP0200"
/note="identified by similarity to EGAD:45955; similarity
to GP:12543558"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187796.1"
/db_xref="GI:57866167"
/db_xref="GeneID:3242816"
/translation="MTNNHFLNIGVLLYGCGHHQAAWRMKDSNIEDIGNISYYQHLAQ
IAEKGLLDIVFFADNQAFNASDNTTMPAFWFDPIINLSAIAQVTSHIGLVPTISSTFS
NPFTASRQLLSLDYLSHGRVGWNLVTSMTDIEAQNHSLQYLPERHERYKKADEFASVM
NQLFTSWSTASYVPDKNNNKIIESKDIKPFYHEGDYFQVRGPHTTPQSPQGKPVSMQA
GASKEGIALAAKYADAVYSVSWDIKQARSYKKKLSDAISKTQHPDRKIKIFPGLVTYV
GETHEKALSKKAELDQKLPIEDALKQLSFFVQQDCSDWELDEPVPPLPPAKNFKGPIG
RYETVLAIIKDKQPTVRELLGYLSAGGGHLTLIGTPEEIVDEMEQWFNEGVADGFNLM
PPSLPHSLEDFLKYIIPELQRRALFKNSYNQSTLRTLLNLDS"
misc_feature complement(210028..211260)
/locus_tag="SERP0200"
/note="nitrilotriacetate monoxygenase oxidizes
nitrilotriacetate utilizing reduced flavin mononucleotide
(FMNH2) and oxygen. The FMNH2 is provided by an
NADH:flavin mononucleotide (FMN) oxidorductase that uses
NADH to reduce FMN to FMNH2; Region:
Nitrilotriacetate_monoxgenase; cd01095"
/db_xref="CDD:73245"
misc_feature complement(209998..211251)
/locus_tag="SERP0200"
/note="FMN-dependent oxidoreductase, nitrilotriacetate
monooxygenase family; Region: FMN_nitrolo; TIGR03860"
/db_xref="CDD:200332"
misc_feature complement(order(210610..210615,210832..210834,
210898..210900,211057..211059,211231..211233,
211243..211245))
/locus_tag="SERP0200"
/note="active site"
/db_xref="CDD:73245"
misc_feature complement(210988..210993)
/locus_tag="SERP0200"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:73245"
gene complement(211327..212079)
/gene="fabG"
/locus_tag="SERP0201"
/db_xref="GeneID:3242817"
CDS complement(211327..212079)
/gene="fabG"
/locus_tag="SERP0201"
/EC_number="1.1.1.100"
/note="Catalyzes the first of the two reduction steps in
the elongation cycle of fatty acid synthesis"
/codon_start=1
/transl_table=11
/product="3-ketoacyl-ACP reductase"
/protein_id="YP_187797.1"
/db_xref="GI:57866168"
/db_xref="GeneID:3242817"
/translation="MKKTAIITGSSRGLGAKIAITLLEKGYNVVVNYKQNKDKAEKLI
RNYNQSRAIAIQADVTDRNDVNRMIQTATQHFGKIDIVINNALVGFKFDPNQQKSFKD
LTWEDYQQQLNGTLKGAFNVTQSVIPQFIEQQSGCIVSIGTNLYQNPVVPYHEYTTAK
AGLIGFTRNIAAELGQYGITANVVSGGLLKTTDASAVTTPEVFDLIAQTTPLRKVTSP
QDVANMVVYLASDEARGVTGQNITVDGGLTMN"
misc_feature complement(211330..212079)
/gene="fabG"
/locus_tag="SERP0201"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional; Region: fabG; PRK08642"
/db_xref="CDD:181517"
misc_feature complement(211333..212073)
/gene="fabG"
/locus_tag="SERP0201"
/note="putative beta-ketoacyl acyl carrier protein
[ACP]reductase (BKR), subgroup 2, classical (c) SDR;
Region: BKR_2_SDR_c; cd05349"
/db_xref="CDD:187607"
misc_feature complement(order(211504..211509,211513..211524,
211600..211602,211612..211614,211651..211659,
211738..211740,211819..211827,211903..211911,
211975..211983,212038..212049,212053..212055))
/gene="fabG"
/locus_tag="SERP0201"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187607"
misc_feature complement(order(211600..211602,211612..211614,
211651..211653,211735..211737))
/gene="fabG"
/locus_tag="SERP0201"
/note="active site"
/db_xref="CDD:187607"
gene complement(212435..213097)
/locus_tag="SERP0202"
/db_xref="GeneID:3241469"
CDS complement(212435..213097)
/locus_tag="SERP0202"
/note="identified by match to protein family HMM PF01712"
/codon_start=1
/transl_table=11
/product="deoxynucleoside kinase"
/protein_id="YP_187798.1"
/db_xref="GI:57866178"
/db_xref="GeneID:3241469"
/translation="MNNYGIPQNAVITIAGTVGVGKSTLTQALADKLNFKTSFENVDH
NPYLDKFYHNFERWSFHLQIYFLAERFKEQKRMFEYGGGFVQDRSIYEDVDIFAKMHE
EQGTMSADDYHTYYELFNAMVMTPYFPKPDVLIYLECDYDEVIDRIQQRGRDMEINTD
PEYWKKLFKRYENWINNFNACPVVRLNINEYDIHEDVDSLDSVIDKIAQVIKAYRQVD
TR"
misc_feature complement(212447..213082)
/locus_tag="SERP0202"
/note="Deoxynucleoside kinases [Nucleotide transport and
metabolism]; Region: COG1428"
/db_xref="CDD:31617"
misc_feature complement(212519..213067)
/locus_tag="SERP0202"
/note="Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family consists
of various deoxynucleoside kinases including deoxyribo-
cytidine (EC 2.7.1.74), guanosine (EC 2.7.1; Region: dNK;
cd01673"
/db_xref="CDD:30191"
misc_feature complement(order(212630..212632,212645..212647,
212807..212809,212909..212914,212942..212944,
213029..213034,213038..213040))
/locus_tag="SERP0202"
/note="Substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:30191"
misc_feature complement(212888..212890)
/locus_tag="SERP0202"
/note="Substrate specificity [chemical binding]; other
site"
/db_xref="CDD:30191"
gene complement(213090..213707)
/locus_tag="SERP0203"
/db_xref="GeneID:3241470"
CDS complement(213090..213707)
/locus_tag="SERP0203"
/note="identified by match to protein family HMM PF01712"
/codon_start=1
/transl_table=11
/product="deoxynucleoside kinase"
/protein_id="YP_187799.1"
/db_xref="GI:57866179"
/db_xref="GeneID:3241470"
/translation="MNKPFIAIEGPIGVGKSSLAHRLSKTFGFYEEKEIVDENPFLSD
FYDDIEKWSFQTEMFFLCNRYKQIRDIESLNQGIVSDYHIHKNKIFAKNTLDAKEFDK
FSRIFDILTEDIEMPNTIIFLDADLDVLKSRIAQRNRSFESQIEDDYLLTLKKDYLAY
YESLKNDGANVIRIDTSQQDFVKNDYDYQNILNLVKPMIGENKDE"
misc_feature complement(213093..213701)
/locus_tag="SERP0203"
/note="Deoxynucleoside kinases [Nucleotide transport and
metabolism]; Region: COG1428"
/db_xref="CDD:31617"
misc_feature complement(213153..213695)
/locus_tag="SERP0203"
/note="Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family consists
of various deoxynucleoside kinases including deoxyribo-
cytidine (EC 2.7.1.74), guanosine (EC 2.7.1; Region: dNK;
cd01673"
/db_xref="CDD:30191"
misc_feature complement(order(213282..213284,213297..213299,
213435..213437,213537..213542,213570..213572,
213657..213662,213666..213668))
/locus_tag="SERP0203"
/note="Substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:30191"
misc_feature complement(213516..213518)
/locus_tag="SERP0203"
/note="Substrate specificity [chemical binding]; other
site"
/db_xref="CDD:30191"
gene 213774..214280
/locus_tag="SERP0204"
/db_xref="GeneID:3241806"
CDS 213774..214280
/locus_tag="SERP0204"
/note="identified by match to protein family HMM PF00383"
/codon_start=1
/transl_table=11
/product="cytidine/deoxycytidylate deaminase"
/protein_id="YP_187800.1"
/db_xref="GI:57866115"
/db_xref="GeneID:3241806"
/translation="MKKNHDYMRLAINEAHKAKALGEVPIGAVIVKEDQVIARAHNLR
ETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVMCAGTIIMSRIPKVVYGA
TDPKGGCSGSLMNLLEQPQFNHRAIVEKGILEEECAELLRSFFKEIREKKKAEKQGKI
QKDINLLK"
misc_feature 213795..214118
/locus_tag="SERP0204"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:29828"
misc_feature order(213849..213851,213897..213899,213930..213938,
214020..214022,214029..214031)
/locus_tag="SERP0204"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:29828"
misc_feature order(213924..213926,213939..213941,213951..213953,
214023..214028,214035..214040,214047..214052)
/locus_tag="SERP0204"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29828"
misc_feature order(213930..213938,214017..214022,214029..214031)
/locus_tag="SERP0204"
/note="catalytic motif [active]"
/db_xref="CDD:29828"
gene 214448..215326
/locus_tag="SERP0205"
/db_xref="GeneID:3242985"
CDS 214448..215326
/locus_tag="SERP0205"
/note="identified by match to protein family HMM PF00702;
match to protein family HMM TIGR00099; match to protein
family HMM TIGR01483; match to protein family HMM
TIGR01484"
/codon_start=1
/transl_table=11
/product="HAD superfamily hydrolase"
/protein_id="YP_187801.1"
/db_xref="GI:57866123"
/db_xref="GeneID:3242985"
/translation="MIKLIATDMDGTLLNAGHEITTMNQEAIKFAQANGITVVIATGR
AFYEAQTPVAETDLKVPYICLNGAEVRDESFNIMSTSHLNHDLVHKITTALKNNHIYY
QIYTNRGIYTEDPKRDLAIYIDIAERAGQKADVDKIRNNIQKRIDNGTLKVVDNYDSI
EDIPGELIMKVLAFDADLSKIDQVGQALASSPNLAVSSSSRGNLEITHSNAQKGIALS
AIAHQLGIDLTDVIAIGDNLNDISMLERVGYPVAMNNATDEVKHIAKYVTDTNENSGV
GKAIMKILKEENNLEV"
misc_feature 214457..>214678
/locus_tag="SERP0205"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 214460..215287
/locus_tag="SERP0205"
/note="haloacid dehalogenase-like hydrolase; Region:
Hydrolase_3; pfam08282"
/db_xref="CDD:203899"
misc_feature order(214469..214477,214571..214576)
/locus_tag="SERP0205"
/note="active site"
/db_xref="CDD:119389"
misc_feature 214469..214486
/locus_tag="SERP0205"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 214571..214573
/locus_tag="SERP0205"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature <215084..215206
/locus_tag="SERP0205"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
gene 215331..215897
/locus_tag="SERP0206"
/db_xref="GeneID:3242986"
CDS 215331..215897
/locus_tag="SERP0206"
/note="identified by similarity to GP:10281002; match to
protein family HMM PF03358"
/codon_start=1
/transl_table=11
/product="azoreductase"
/protein_id="YP_187802.1"
/db_xref="GI:57866124"
/db_xref="GeneID:3242986"
/translation="MKGLIIIGSAQVGSHTNALSKYLKGQLGEHDVEVEIFDLAEKPI
HQLDFAGTTQAVDEIKNNVKSLQSKAMEADFLILGTPNYHGSFSGILKNALDHLNMDH
FKMKPVGLICNSGGIVSSEPLSHLRVIVRSLLGIAVPTQIATHDSDYAKLEDGTLYLE
DNEFQLRAKLFVDQIVSFVTNSPYEHLK"
misc_feature 215331..215894
/locus_tag="SERP0206"
/note="Predicted flavoprotein [General function prediction
only]; Region: COG0431"
/db_xref="CDD:30780"
gene 216458..219136
/locus_tag="SERP0207"
/db_xref="GeneID:3242987"
CDS 216458..219136
/locus_tag="SERP0207"
/note="Point mutation observed 38 residues upstream of the
start, causing translation to begin at the Leu.;
identified by similarity to GP:8101007; match to protein
family HMM PF00746; match to protein family HMM PF05738;
match to protein family HMM TIGR01167"
/codon_start=1
/transl_table=11
/product="sdrG protein"
/protein_id="YP_187803.1"
/db_xref="GI:57866125"
/db_xref="GeneID:3242987"
/translation="MFGLGHNEAKAEENTVQDVKDSNMDDELSDSNDQSSNEEKNDVI
NNSQSINTDDDNQIKKEETNSNDAIENRSKDITQSTTNVDENEATFLQKTPQDNTQLK
EEVVKEPSSVESSNSSMDTAQQPSHTTINSEASIQTSDNEENSRVSDFANSKIIESNT
ESNKEENTIEQPNKVREDSITSQPSSYKNIDEKISNQDELLNLPINEYENKVRPLSTT
SAQPSSKRVTVNQLAAEQGSNVNHLIKVTDQSITEGYDDSDGIIKAHDAENLIYDVTF
EVDDKVKSGDTMTVNIDKNTVPSDLTDSFAIPKIKDNSGEIIATGTYDNTNKQITYTF
TDYVDKYENIKAHLKLTSYIDKSKVPNNNTKLDVEYKTALSSVNKTITVEYQKPNENR
TANLQSMFTNIDTKNHTVEQTIYINPLRYSAKETNVNISGNGDEGSTIIDDSTIIKVY
KVGDNQNLPDSNRIYDYSEYEDVTNDDYAQLGNNNDVNINFGNIDSPYIIKVISKYDP
NKDDYTTIQQTVTMQTTINEYTGEFRTASYDNTIAFSTSSGQGQGDLPPEKTYKIGDY
VWEDVDKDGIQNTNDNEKPLSNVLVTLTYPDGTSKSVRTDEEGKYQFDGLKNGLTYKI
TFETPEGYTPTLKHSGTNPALDSEGNSVWVTINGQDDMTIDSGFYQTPKYSLGNYVWY
DTNKDGIQGDDEKGISGVKVTLKDENGNIISTTTTDENGKYQFDNLNSGNYIVHFDKP
SGMTQTTTDSGDDDEQDADGEEVHVTITDHDDFSIDNGYYDDDSDSDSDSDSDSDDSD
SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSGLDNSSDKNTKDKLPDT
GANEDHDSKGTLLGALFAGLGALLLGKRRKNRKNKN"
misc_feature 217616..217993
/locus_tag="SERP0207"
/note="C-terminus of bacterial fibrinogen-binding adhesin;
Region: SdrG_C_C; pfam10425"
/db_xref="CDD:151005"
misc_feature 218192..>218362
/locus_tag="SERP0207"
/note="Carboxypeptidase regulatory-like domain; Region:
CarboxypepD_reg; pfam13620"
/db_xref="CDD:205798"
misc_feature 218546..>218677
/locus_tag="SERP0207"
/note="Cna protein B-type domain; Region: Cna_B;
pfam05738"
/db_xref="CDD:191360"
gene complement(219501..221003)
/locus_tag="SERP0208"
/db_xref="GeneID:3242988"
CDS complement(219501..221003)
/locus_tag="SERP0208"
/note="identified by match to protein family HMM PF00534"
/codon_start=1
/transl_table=11
/product="glycosyl transferase, group 1 family protein"
/protein_id="YP_187804.1"
/db_xref="GI:57866126"
/db_xref="GeneID:3242988"
/translation="MYYFVGNNIGHKTAGIEKAMINRLNLFKAYHYQAKILLLAWNRY
LTQTASQYINSEDYINMYDYFQEASNVTSVFSKNWIHYWRNECGYTIKPVSETNDVRI
YDQQQFIMYAHFADEAYQKIDYINYFDTSRRKIKRELYDTRGFLSCVRVLSTDQKIQA
EYYLSPQGNVKIEKYYDINSNHPYVAKKIILNHLGKTHFLNNETELGAFFIETIYQSS
DLFFSDRNLVTSHIFNIVASYIPVIAVLHSTHVKDVTDLTHSPIKNVYKGVFEHLQRY
KAIIVSTQQQKADVIERIRGVIPVYAIPVGYSSFEMNDDSNKNNYVSPKKIISVARYS
PEKQLIQQIELINRLKDTFPNIELHMYGFGKEEQHLKERIQELGLEKHVILRGFLKDL
TDEYQDAYLNLITSNMEGFSLALLECESHGVPSISYDIQYGPGELIQDGKNGYLIEKN
NQHMLFEKVKLLLNNPQLQQSFSHHCIETAQKYSQTQIMLLWKNLLQHFN"
misc_feature complement(220398..221003)
/locus_tag="SERP0208"
/note="Domain of unknown function (DUF1975); Region:
DUF1975; pfam09318"
/db_xref="CDD:150097"
misc_feature complement(219528..220643)
/locus_tag="SERP0208"
/note="This family is most closely related to the GT1
family of glycosyltransferases and is named after gtfA in
Streptococcus gordonii, where it plays a role in the
O-linked glycosylation of GspB, a cell surface
glycoprotein involved in platelet binding. In...; Region:
GT1_gtfA_like; cd04949"
/db_xref="CDD:99998"
misc_feature complement(219513..>220313)
/locus_tag="SERP0208"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
gene complement(221374..221772)
/gene="arsC-1"
/locus_tag="SERP0209"
/db_xref="GeneID:3242989"
CDS complement(221374..221772)
/gene="arsC-1"
/locus_tag="SERP0209"
/note="catalyzes the reduction of arsenate to arsenite;
also can dephosphorylate tyrosine phosphorylated proteins,
aryl phosphates, and acyl phosphates"
/codon_start=1
/transl_table=11
/product="arsenate reductase"
/protein_id="YP_187805.1"
/db_xref="GI:57866127"
/db_xref="GeneID:3242989"
/translation="MQKKTIYFICTGNSCRSQMAEGFGKLILGDKWNVYSAGIETHGV
NPHAIKAMKEVGIDISHHTSDLINNDILIASDIVVTLCSDADANCPVLPKNVTKEHWG
FDDPAGKDWSEFQRVRDEIKAAIETFAHRV"
misc_feature complement(221386..221763)
/gene="arsC-1"
/locus_tag="SERP0209"
/note="Low molecular weight phosphatase family; Region:
LMWPc; cd00115"
/db_xref="CDD:29014"
misc_feature complement(221386..221757)
/gene="arsC-1"
/locus_tag="SERP0209"
/note="Low molecular weight phosphotyrosine protein
phosphatase; Region: LMWPc; pfam01451"
/db_xref="CDD:201802"
misc_feature complement(order(221722..221730,221734..221739,
221743..221745))
/gene="arsC-1"
/locus_tag="SERP0209"
/note="active site"
/db_xref="CDD:29014"
gene complement(221788..223080)
/locus_tag="SERP0210"
/db_xref="GeneID:3242990"
CDS complement(221788..223080)
/locus_tag="SERP0210"
/note="identified by match to protein family HMM PF02040;
match to protein family HMM TIGR00935"
/codon_start=1
/transl_table=11
/product="arsenical pump membrane protein"
/protein_id="YP_187806.1"
/db_xref="GI:57866128"
/db_xref="GeneID:3242990"
/translation="MTTVLAIVIFFITLTLIIWQPKGLDIGISAIIGALLVIITGVVN
FTDILEVIGIVWNATLTFVSVILISLILDEIGFFEWSAIHMVKASNGHGLKMFIYIMI
LGALIAAFFANDGAALILTPIVLAMIRNLGFNNKLVFPFIIACGFIADSTSLPLVVSN
LVNIVSADYFGIKFVEYLMRMFIPNLFSLLASILVLWFYFRKSIPKTFDISSISEPKD
AIRDTRLFKISWIILALLLIGYLVSEFIHIPVSFITGAIAVIFILLARQSNVVHTKQV
IKGAPWNIVIFSIGMYLVIFGLKNVGMTLILADILSSIAQHGLFSSIMGMGFVSAFLS
AIMNNMPTVLIDAIAIDQSHAISSIKEGMIYANVIGADLGPKITPIGSLATLLWLHVL
VQKGVKISWGTYFKTGIVITIPVLFFTLLGLYLTLIIF"
misc_feature complement(221836..223071)
/locus_tag="SERP0210"
/note="arsenical pump membrane protein; Provisional;
Region: PRK15445"
/db_xref="CDD:185342"
misc_feature complement(221836..223026)
/locus_tag="SERP0210"
/note="Anion permease ArsB. These permeases have been
shown to export arsenate and antimonite in eubacteria and
archaea. A typical ArsB permease contains 8-13
transmembrane helices and can function either
independently as a chemiosmotic transporter or as a...;
Region: ArsB_permease; cd01118"
/db_xref="CDD:29732"
misc_feature complement(order(221836..221856,221932..221991,
222070..222117,222187..222243,222286..222330,
222361..222399,222487..222531,222595..222666,
222685..222738,222742..222792,222862..222915,
222964..223005,223024..223026))
/locus_tag="SERP0210"
/note="transmembrane helices; other site"
/db_xref="CDD:29732"
gene complement(223077..223394)
/gene="arsR-1"
/locus_tag="SERP0211"
/db_xref="GeneID:3242991"
CDS complement(223077..223394)
/gene="arsR-1"
/locus_tag="SERP0211"
/note="identified by similarity to EGAD:10168; match to
protein family HMM PF01022"
/codon_start=1
/transl_table=11
/product="arsenical resistance operon repressor"
/protein_id="YP_187807.1"
/db_xref="GI:57866129"
/db_xref="GeneID:3242991"
/translation="MSYIQLSNILKVIANPSRLEILDLLSCGELCACDLLIHFNFSQP
TLSHHMKLLVDCKLVFANKVGNKQIYELNHRLFEQVTNQLNLLHSTHNQCICHTIKKG
EIS"
misc_feature complement(223170..223367)
/gene="arsR-1"
/locus_tag="SERP0211"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature complement(order(223224..223226,223314..223316,
223323..223328,223335..223340,223347..223349,
223356..223358,223362..223367))
/gene="arsR-1"
/locus_tag="SERP0211"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature complement(order(223185..223193,223206..223214,
223230..223235,223239..223244,223251..223256,
223260..223271,223296..223304,223341..223349,
223359..223364))
/gene="arsR-1"
/locus_tag="SERP0211"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature complement(order(223293..223295,223302..223304))
/gene="arsR-1"
/locus_tag="SERP0211"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene complement(223538..224416)
/locus_tag="SERP0212"
/db_xref="GeneID:3241177"
CDS complement(223538..224416)
/locus_tag="SERP0212"
/note="similar protein in Methanocaldococcus converts GTP
to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the
first step in methanopterin biosynthesis"
/codon_start=1
/transl_table=11
/product="GTP cyclohydrolase"
/protein_id="YP_187808.1"
/db_xref="GI:57866138"
/db_xref="GeneID:3241177"
/translation="MTEFDLSTREGRWKHFGSVDPVKGTKPTTKNEMTDLQSTHKNFL
FEIEEVGIKNLTYPVLIDQYQTAGLFSFSTSLNKNEKGINMSRILESVEKHYDNGIEL
EFNTLHQLLRTLQDKMNQNAAGVDVSGKWFFDRYSPVTHIKAVGHADVTYGLAIENHT
VTRKELTIQAKVTTLCPCSKEISEYSAHNQRGIVTVKAYLDKNNDVIDDYKNKILDAM
EANASSILYPILKRPDEKRVTERAYENPRFVEDLIRLIAADLVEFDWIEGFDIECRNE
ESIHQHDAFARLKYRK"
misc_feature complement(223541..224344)
/locus_tag="SERP0212"
/note="putative GTP cyclohydrolase; Provisional; Region:
PRK13674"
/db_xref="CDD:184231"
gene complement(224430..225095)
/locus_tag="SERP0213"
/db_xref="GeneID:3241178"
CDS complement(224430..225095)
/locus_tag="SERP0213"
/note="identified by similarity to OMNI:NTL01SA0544; match
to protein family HMM PF02585"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187809.1"
/db_xref="GI:57866139"
/db_xref="GeneID:3241178"
/translation="MTDERHVLVIFPHPDDETFSSAGTIASYIEKGIPVTYACLTLGQ
MGRNLGNPPFATRESLPLIRERELEEACKAIGITDLRKMGLRDKTVEFEPYDQMDQMI
QSLIDETNPSLIISFYPKFAVHPDHEATAEAVVRTVGRMHVSDRPRLTLVAFSNDAPE
ILGEPDIQNDISQYSDIKLKAFEAHASQTGPFLKQLASPEIDGQAQSFLKIEPFWTYH
FES"
misc_feature complement(224439..225083)
/locus_tag="SERP0213"
/note="bacillithiol biosynthesis deacetylase BshB2;
Region: thiol_BshB2; TIGR04000"
/db_xref="CDD:188515"
gene complement(225111..225473)
/locus_tag="SERP0214"
/db_xref="GeneID:3241179"
CDS complement(225111..225473)
/locus_tag="SERP0214"
/note="identified by similarity to OMNI:NTL01SA0545"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187810.1"
/db_xref="GI:57866140"
/db_xref="GeneID:3241179"
/translation="MLEPIKEQEVLDLLTSYANQPVYLHVETTNGAYANHFDQRVFNA
GTFLRNIVVTFEHAQLKGGDKDPYRVGLKLKDGGWVYVQGLTHYEVNKNNEFLIVGFN
YEGQLAATIEISKQPFTI"
misc_feature complement(225117..225467)
/locus_tag="SERP0214"
/note="Protein of unknown function (DUF1806); Region:
DUF1806; pfam08830"
/db_xref="CDD:149780"
gene 225758..226489
/gene="nagB"
/locus_tag="SERP0215"
/db_xref="GeneID:3241180"
CDS 225758..226489
/gene="nagB"
/locus_tag="SERP0215"
/EC_number="3.5.99.6"
/note="identified by similarity to EGAD:107403; match to
protein family HMM PF01182"
/codon_start=1
/transl_table=11
/product="glucosamine-6-phosphate isomerase"
/protein_id="YP_187811.1"
/db_xref="GI:57866141"
/db_xref="GeneID:3241180"
/translation="MKMINLDSKKLASFYVACELFKQIQQYPHTKLGLATGGTMTDVY
HYLVNLLTKNKADVSQVETFNLDEYVGLKASHQQSYHTYMNKVLFEQYPHFAKNHIHI
PDGYSENLEAEAERYNKLLDERGPIDIQILGIGENGHIGFNEPGTDFNSETHVVNLTE
STIKANSRYFDNEADVPRQAVSMGLASILKAKRIILLAFGPKKKEAISKLLNEQVTED
VPATILHTHPNVEVYVDDDAAPDCL"
misc_feature 225791..226474
/gene="nagB"
/locus_tag="SERP0215"
/note="GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P)
deaminase subfamily; GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to D-fructose-6-phosphate
(Fru6P) and ammonium. The reaction is an aldo-keto
isomerization coupled with an amination or...; Region:
GlcN6P_deaminase; cd01399"
/db_xref="CDD:73165"
misc_feature order(225863..225874,225953..225958,226154..226159,
226172..226174,226178..226180,226259..226261,
226364..226366)
/gene="nagB"
/locus_tag="SERP0215"
/note="active site"
/db_xref="CDD:73165"
misc_feature order(226193..226195,226199..226204,226226..226228,
226388..226408,226430..226438)
/gene="nagB"
/locus_tag="SERP0215"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:73165"
misc_feature order(226196..226201,226217..226228)
/gene="nagB"
/locus_tag="SERP0215"
/note="allosteric site; other site"
/db_xref="CDD:73165"
misc_feature order(226232..226234,226241..226273,226280..226288)
/gene="nagB"
/locus_tag="SERP0215"
/note="active site lid [active]"
/db_xref="CDD:73165"
misc_feature order(226247..226249,226358..226360,226370..226372,
226463..226465,226472..226474)
/gene="nagB"
/locus_tag="SERP0215"
/note="hexamer (dimer of trimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:73165"
gene 226611..227243
/locus_tag="SERP0216"
/db_xref="GeneID:3241357"
CDS 226611..227243
/locus_tag="SERP0216"
/note="identified by match to protein family HMM PF00215"
/codon_start=1
/transl_table=11
/product="hexulose-6-phosphate synthase"
/protein_id="YP_187812.1"
/db_xref="GI:57866142"
/db_xref="GeneID:3241357"
/translation="MELQLAIDLLNKEEAAKLAQKVEEYVDIVEIGTPIVINEGLPAV
QHLNENINNAKVLADLKIMDAADYEVSQAVKYGADIVTILGVAEDASIKAAVEEAHKH
GKALLVDMIAVQNLEQRAKELDEMGADYIAVHTGYDLQAEGKSPLDSLRTVKSVIKNS
KVAVAGGIKPDTIKDIVAEDPDLVIVGGGIANADDPVEAAKQCRAAIEGK"
misc_feature 226611..227219
/locus_tag="SERP0216"
/note="3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC)
and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC
catalyzes the formation of L-xylulose 5-phosphate and
carbon dioxide from 3-keto-L-gulonate 6-phosphate as part
of the anaerobic pathway for...; Region: KGPDC_HPS;
cd04726"
/db_xref="CDD:240077"
misc_feature order(226626..226628,226632..226634,226698..226700,
226785..226787,226791..226793,227010..227012,
227103..227105,227109..227111,227169..227174)
/locus_tag="SERP0216"
/note="active site"
/db_xref="CDD:240077"
misc_feature order(226638..226640,226719..226721,226728..226733,
226800..226808,226824..226826,226866..226868,
226881..226883,226944..226946,226962..226964,
227010..227012,227016..227024)
/locus_tag="SERP0216"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240077"
misc_feature order(226698..226700,226785..226787)
/locus_tag="SERP0216"
/note="magnesium binding site [ion binding]; other site"
/db_xref="CDD:240077"
gene 227245..227793
/locus_tag="SERP0217"
/db_xref="GeneID:3241358"
CDS 227245..227793
/locus_tag="SERP0217"
/note="identified by match to protein family HMM PF01380"
/codon_start=1
/transl_table=11
/product="SIS domain-containing protein"
/protein_id="YP_187813.1"
/db_xref="GI:57866143"
/db_xref="GeneID:3241358"
/translation="MSEFNNYRLILEELDATLSQVDNTEYERFANDVIGADRIFTAGK
GRSGFVSNSFAMRLNQLGKNAYVVGESTTPSIKEHDLFIIISGSGSTEHLRLLAEKAQ
SVGAKIVLLTTNADSPIGNLAETVVELPAGTKHDVEGSKQPLGSLFEQASLIFLDSIV
LPLMDAFHISEKAMQENHANLE"
misc_feature 227257..227781
/locus_tag="SERP0217"
/note="Hexulose-6-phosphate isomerase (PHI). PHI is a
member of the SIS (Sugar ISomerase domain) superfamily. In
the ribulose monophosphate pathway of formaldehyde
fixation, hexulose-6-phosphate synthase catalyzes the
condensation of ribulose-5-phosphate with...; Region:
SIS_PHI; cd05005"
/db_xref="CDD:88402"
misc_feature order(227260..227268,227275..227277,227380..227382,
227389..227391,227398..227403,227410..227415,
227419..227421,227437..227439,227455..227466,
227518..227523,227533..227535,227542..227544,
227680..227682,227692..227694,227713..227718,
227725..227730,227767..227778)
/locus_tag="SERP0217"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:88402"
misc_feature 227263..227787
/locus_tag="SERP0217"
/note="Predicted sugar phosphate isomerase involved in
capsule formation [Cell envelope biogenesis, outer
membrane]; Region: GutQ; COG0794"
/db_xref="CDD:31137"
misc_feature order(227383..227385,227500..227508)
/locus_tag="SERP0217"
/note="active site"
/db_xref="CDD:88402"
gene 227914..228561
/locus_tag="SERP0218"
/db_xref="GeneID:3241359"
CDS 227914..228561
/locus_tag="SERP0218"
/note="identified by match to protein family HMM PF00702"
/codon_start=1
/transl_table=11
/product="HAD superfamily hydrolase"
/protein_id="YP_187814.1"
/db_xref="GI:57866144"
/db_xref="GeneID:3241359"
/translation="MNFDSYIFDFDGTLIDTTTCHVKAIQSAFKRLNLDEPTEQAILH
TYHLNLYNNFKALASHELSFYQIEKLIDEYHRCFSNDEIHQSKEYTGISEALQFLHNQ
KKKIFVLSNKDTLTTQRYLDYLGLSRFITDSLGVCIKNEDKLLCETIQNLIQKHHLMI
GKTVYIGDTAQDIKSANQAHVQTCAVTWGAQSAHELLYENPHYVVNNPEEFLTIL"
misc_feature 227914..228558
/locus_tag="SERP0218"
/note="Predicted phosphatases [General function prediction
only]; Region: Gph; COG0546"
/db_xref="CDD:30892"
misc_feature 228121..228471
/locus_tag="SERP0218"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 228241..228243
/locus_tag="SERP0218"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 228679..230040
/locus_tag="SERP0219"
/db_xref="GeneID:3241360"
CDS 228679..230040
/locus_tag="SERP0219"
/note="identified by match to protein family HMM PF00501"
/codon_start=1
/transl_table=11
/product="long chain fatty acid CoA ligase"
/protein_id="YP_187815.1"
/db_xref="GI:57866145"
/db_xref="GeneID:3241360"
/translation="MKKIMEYLQHYINQYPHRLALVFEDRHLTYGELSKEIYQASMRY
KEVKLNEKVGLMDDHPVNNIINYFAVHQRGGIPCIFNHQWSNERIHQLVKSYDIQWLI
KDNHLTLNHDDSIYNDEVIPRNVIHIGFTSGTTGLPKAFYRNEHSWIVSFKENEKLLQ
HCEETIVAPGPLSHSLSLYACIYALSTGKTFIGQKNFNPLSLMRLINQLNKATAIFVV
PTMVQQLISTQRHCSSIKSILSSGAKLTLQQFQQISTLYPQANLIEFFGTSEASFISY
NFNQSSPAHSVGKLFPHVETRLLNQDDDAVGLLAVRSEMVFSGYVGQSNQEGSWIKTG
DFAYIKNQHLFLVGRESDRIIVGGINVYPTAIESLIMDIEGIDEALVIGIPHAKFGEI
AILLYSGKVQLNYRQIKSFLMKQLSRQEVPSKLKKIDHMIYTESGKIARKEMKNKFIN
GEL"
misc_feature 228694..230034
/locus_tag="SERP0219"
/note="acyl-CoA synthetase; Validated; Region: PRK07638"
/db_xref="CDD:181064"
misc_feature 228763..229821
/locus_tag="SERP0219"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
gene 230043..231191
/locus_tag="SERP0220"
/db_xref="GeneID:3242803"
CDS 230043..231191
/locus_tag="SERP0220"
/note="identified by match to protein family HMM PF00108;
match to protein family HMM PF02803; match to protein
family HMM TIGR01930"
/codon_start=1
/transl_table=11
/product="acetyl-CoA acetyltransferase"
/protein_id="YP_187816.1"
/db_xref="GI:57866154"
/db_xref="GeneID:3242803"
/translation="MKQPVIIAAKRIAFGKYGGRLKHLEPESLLEPLFNHFTDQYPKV
MSLLDDVILGNTVGNGGNLARKSLLEAGLDFKIPGITIDRQCGSGLEAVIQACRMVQS
GAGTIYIAGGVESTSRAPWKIKRPQSVYESEFPQFFERAPFAREGEDPSMIEAAENVA
KKYHISRNEQDDFAYRSHQLASKNMNNGNISQEILPFKVKGECFNQDESIKPQLTLKT
LGRLKPLLNEGTVTVGNSCMKNDGAVLLIVMEENRARQLGFTEGIKFVNSATVGVQPQ
YLGVGPVPAVNQLLARERLTINDINAVELNEAFSSQVIASQQQLNIPLNKLNCWGGAI
ATGHPYGASGAALVTRLFYMKHQFRTVATMGIGGGIGNAALFERWYGN"
misc_feature 230055..231176
/locus_tag="SERP0220"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:29411"
misc_feature 230058..231173
/locus_tag="SERP0220"
/note="acetyl-CoA acetyltransferases; Region:
AcCoA-C-Actrans; TIGR01930"
/db_xref="CDD:213668"
misc_feature order(230109..230111,230190..230192,230226..230228,
230235..230237,230247..230249,230280..230291,
230313..230315,230334..230339,230346..230348,
230391..230393,230844..230846,230850..230852,
230856..230858,230916..230918,231144..231149)
/locus_tag="SERP0220"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29411"
misc_feature order(230298..230300,231054..231056,231135..231137)
/locus_tag="SERP0220"
/note="active site"
/db_xref="CDD:29411"
gene 231157..231519
/locus_tag="SERP0221"
/db_xref="GeneID:3242804"
CDS 231157..231519
/locus_tag="SERP0221"
/note="identified by similarity to OMNI:SA0623"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187817.1"
/db_xref="GI:57866155"
/db_xref="GeneID:3242804"
/translation="MQLYLKDGMEIREVQFTNEEVQNYCELLNIKYDHYVPTLMCAKL
WPQFELFQSFSKKPIILKETHIKTQQQLQVDCTYEATLHKVSQKLIKNIIKYTYGLEI
NKDKKHCMYIKQIFIEVR"
gene 231523..231783
/locus_tag="SERP0222"
/db_xref="GeneID:3242805"
CDS 231523..231783
/locus_tag="SERP0222"
/note="identified by similarity to OMNI:SA0624"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187818.1"
/db_xref="GI:57866156"
/db_xref="GeneID:3242805"
/translation="MKFTIEMVNEYLTIVNDENPIHRSIVPGQLICEKVFSELNVNWM
NYKIKYLKPINIDEEVQFLIKENDEIIVFKTYDDIKLTITRS"
gene 231998..233392
/locus_tag="SERP0223"
/db_xref="GeneID:3242806"
CDS 231998..233392
/locus_tag="SERP0223"
/note="identified by match to protein family HMM PF00083"
/codon_start=1
/transl_table=11
/product="major facilitator family transporter"
/protein_id="YP_187819.1"
/db_xref="GI:57866157"
/db_xref="GeneID:3242806"
/translation="MVDGNNAKKTVIATGIGNAMEWFDFGLYSYLAVIISKNFFSQVD
NDQLKLVFTFATFAIAFLLRPIGGIVFGIIGDKYGRKIVLTTTIILMAFSTLLIGVLP
TYNEIGVWAPILLLLARVLQGFSTGGEYAGAMVYVAESSPDRKRNSLGCGLEIGTLSG
YIAASILVFALNISLTETQLNSWGWRIPFLLGMFLGLFGLYLRRKLEESPIYENEQRE
LQKHPTREPIGVFTLIRFYYKDIIVCFVAVAFFNVTNYMVTAYLPSYLEGVIKLNGTT
TSIMITCIMVIMIPLALMFGRIADRIGEKKVFLIGLGGLILLSVVAFSLMQLQSLFFV
SIGVLILGFFLSTYEATMPGSLPTMFYTHVRYRALAITFNVSVSLLGGTTPLIASYLV
STTNNPLTPAYYLTVISIIGFIVIALLHKSTASKSLKGSYPNVDNEKDREYYEKNPEQ
ALWWLKERQEKEKF"
misc_feature 231998..233347
/locus_tag="SERP0223"
/note="proline/glycine betaine transporter; Provisional;
Region: PRK10642"
/db_xref="CDD:182611"
misc_feature 232028..233254
/locus_tag="SERP0223"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(232070..232072,232079..232087,232091..232096,
232151..232153,232160..232165,232187..232189,
232199..232204,232208..232213,232373..232378,
232385..232390,232397..232402,232409..232411,
232445..232450,232457..232462,232478..232480,
232751..232753,232760..232765,232772..232777,
232784..232786,232826..232828,232838..232840,
232850..232852,232859..232861,232871..232873,
233021..233023,233030..233035,233042..233044,
233054..233059,233066..233068,233099..233104,
233114..233119,233126..233131,233138..233140)
/locus_tag="SERP0223"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(233685..233864)
/locus_tag="SERP0224"
/db_xref="GeneID:3242807"
CDS complement(233685..233864)
/locus_tag="SERP0224"
/note="identified by similarity to OMNI:SA0625"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187820.1"
/db_xref="GI:57866158"
/db_xref="GeneID:3242807"
/translation="MIIYRRNIENGTPVYEIITKTFKTITIKCDETFNKYEIYQLLSL
LENDVDNMPTSYSYR"
gene 234297..234452
/locus_tag="SERP0225"
/db_xref="GeneID:3242808"
CDS 234297..234452
/locus_tag="SERP0225"
/note="identified by similarity to GP:8918792"
/codon_start=1
/transl_table=11
/product="truncated IS1272 transposase"
/protein_id="YP_187821.1"
/db_xref="GI:57866159"
/db_xref="GeneID:3242808"
/translation="MYKDYNMTQHTLLMETSVHIPTNDISRHVNDIAETIPDTEFDEF
RHYRSLI"
gene complement(234682..235515)
/gene="thiD-1"
/locus_tag="SERP0226"
/db_xref="GeneID:3242809"
CDS complement(234682..235515)
/gene="thiD-1"
/locus_tag="SERP0226"
/EC_number="2.7.4.7"
/note="identified by similarity to EGAD:21177; match to
protein family HMM TIGR00097"
/codon_start=1
/transl_table=11
/product="phosphomethylpyrimidine kinase"
/protein_id="YP_187822.1"
/db_xref="GI:57866160"
/db_xref="GeneID:3242809"
/translation="MMALKKVLTIAGSDTSAGAGMQADLKTFQELDVYGMVALTSIVT
MDKETWSHDVTPIDMNIFEKQLETAISIGPNAIKTGMLGTQDIIKRAGDVFVESGADY
FVVDPVMVCKGEDEVLNPGNTEAMIQYLLPKATVVTPNLFEAGQLSGLGKLTSIEDMK
KAAQVIYDKGTPHVIIKGGKALDQDKSYDLYYDGQQFYQLTTDMFQQSYNHGAGCTFA
AATTAYLANGKSPKEAIIAAKAFVASAIKNGWKMNDFVGPVDHGAYNRIEQINVEVTE
V"
misc_feature complement(234823..235500)
/gene="thiD-1"
/locus_tag="SERP0226"
/note="4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of vitamin
B1. The first step is the phosphorylation of...; Region:
HMPP_kinase; cd01169"
/db_xref="CDD:29353"
misc_feature complement(order(235309..235314,235324..235326,
235333..235335,235342..235347,235351..235353,
235357..235362,235378..235392,235399..235401,
235405..235422,235429..235431,235438..235443,
235450..235452,235462..235464,235468..235473,
235477..235479,235498..235500))
/gene="thiD-1"
/locus_tag="SERP0226"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29353"
misc_feature complement(order(234871..234873,235273..235275,
235381..235383,235444..235446,235480..235482))
/gene="thiD-1"
/locus_tag="SERP0226"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29353"
misc_feature complement(order(234874..234876,234880..234882,
234985..234987,235087..235089,235198..235200))
/gene="thiD-1"
/locus_tag="SERP0226"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29353"
gene complement(235619..236599)
/locus_tag="SERP0227"
/db_xref="GeneID:3242810"
CDS complement(235619..236599)
/locus_tag="SERP0227"
/note="identified by similarity to EGAD:17563; match to
protein family HMM PF02275"
/codon_start=1
/transl_table=11
/product="penicillin V acylase"
/protein_id="YP_187823.1"
/db_xref="GI:57866161"
/db_xref="GeneID:3242810"
/translation="MCTAISLYTKQRYHYLARTMDFAFEFNGIPTIVPRHYHYQFDLD
SDMRLEYGFVGTNLKVGRYRFGDGINEKGLAISNHYFTGEASYSTHKRYGYFNLAPEE
FIVWVLGFNKSISELKQKVKKINIMNEKNTTLNIVPPLHFMVTDETGHTVAIEPHNGL
LIVKDNYVHTLTNAPKLDWHLSNLRNYAYLTPQKSTNQLIGKVLVRSMGCEAGTNGLP
GGYTSTERFIRATYLRHQLRCSHNEDENLMNCFKVLESVSIPQGAVIDANKIHYTQYQ
LVMESKERSYYIKPYFSNQIFKIKLTEDLLSKNELTFLPINHELKITSIQ"
misc_feature complement(235667..236596)
/locus_tag="SERP0227"
/note="Linear amide C-N hydrolases, choloylglycine
hydrolase family; Region: CBAH; pfam02275"
/db_xref="CDD:202187"
misc_feature complement(235697..236596)
/locus_tag="SERP0227"
/note="Penicillin V acylase (PVA), also known as
conjugated bile salt acid hydrolase (CBAH), catalyzes the
hydrolysis of penicillin V to yield 6-amino penicillanic
acid (6-APA), an important key intermediate of
semisynthetic penicillins. PVA has an N-terminal...;
Region: Ntn_PVA; cd00542"
/db_xref="CDD:48435"
misc_feature complement(order(236180..236182,236195..236197,
236207..236209,236402..236404,236420..236422,
236522..236524,236540..236542,236546..236548,
236594..236596))
/locus_tag="SERP0227"
/note="active site"
/db_xref="CDD:48435"
gene 236766..237416
/gene="ung"
/locus_tag="SERP0228"
/db_xref="GeneID:3242818"
CDS 236766..237416
/gene="ung"
/locus_tag="SERP0228"
/EC_number="3.2.2.-"
/note="Excises uracil residues from the DNA which can
arise as a result of misincorporation of dUMP residues by
DNA polymerase or due to deamination of cytosine"
/codon_start=1
/transl_table=11
/product="uracil-DNA glycosylase"
/protein_id="YP_187824.1"
/db_xref="GI:57866169"
/db_xref="GeneID:3242818"
/translation="MKWSEVFHDITTRHDFQAMHDFLEKEYTTQIVYPDKKNIYQAFD
LTPFEDIKVVILGQDPYHGPNQAHGLAFSVQPHAKFPPSLRNMYQELENDIGCHRTSP
HLQDWAREGVLLLNTVLTVRQGEAHSHRNIGWETFTDEIIQAVSNYREHVVFILWGRP
AQQKERFIDTSKHLIIKSPHPSPLSAFRGFFGSKPYSTTNNYLKSKGKTPVQWCES"
misc_feature 236811..237404
/gene="ung"
/locus_tag="SERP0228"
/note="Family 1 of Uracil-DNA glycosylase (UDG) enzymes;
Region: UDG_F1; cd10027"
/db_xref="CDD:198425"
misc_feature order(236934..236948,236976..236981,237012..237014,
237111..237113,237303..237305)
/gene="ung"
/locus_tag="SERP0228"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:198425"
misc_feature order(236937..236942,236946..236951,237006..237014,
237237..237242,237300..237305,237309..237320)
/gene="ung"
/locus_tag="SERP0228"
/note="active site"
/db_xref="CDD:198425"
misc_feature order(236937..236939,236946..236954,237006..237014,
237138..237143,237237..237242,237303..237305,
237309..237317)
/gene="ung"
/locus_tag="SERP0228"
/note="UGI interface [polypeptide binding]; other site"
/db_xref="CDD:198425"
misc_feature order(236940..236942,237303..237305)
/gene="ung"
/locus_tag="SERP0228"
/note="catalytic site [active]"
/db_xref="CDD:198425"
gene 237426..237785
/locus_tag="SERP0229"
/db_xref="GeneID:3242819"
CDS 237426..237785
/locus_tag="SERP0229"
/note="identified by similarity to OMNI:SA0628"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187825.1"
/db_xref="GI:57866170"
/db_xref="GeneID:3242819"
/translation="MNKKQILQLIEQELVQADEAQTDTEFEKHMYAIHMLTSLVSSHQ
SRSTIEKLNRSKPMNSNIKDDYEMKQQTSQKHDVTVAEIEAMGGKVPQSMKKHHTSNN
MMITDDHVGNGESIFDF"
gene 237807..238178
/locus_tag="SERP0230"
/db_xref="GeneID:3242820"
CDS 237807..238178
/locus_tag="SERP0230"
/note="identified by similarity to OMNI:SA0629; match to
protein family HMM PF04241"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187826.1"
/db_xref="GI:57866171"
/db_xref="GeneID:3242820"
/translation="MMKVFIILGALNAMMAVGTGAFGAHGLEGKLSDKYMSIWEKATT
YQMYHGLGLLVIGLISGTTSINVNWAGWLLFFGIVFFSGSLYFLALTQVRILGAITPI
GGVLFIIGWLVLVIATLKFAG"
misc_feature 237807..238175
/locus_tag="SERP0230"
/note="Uncharacterized small membrane protein [Function
unknown]; Region: COG2363"
/db_xref="CDD:32510"
gene complement(238162..238254)
/locus_tag="SERP0231"
/db_xref="GeneID:3242821"
CDS complement(238162..238254)
/locus_tag="SERP0231"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187827.1"
/db_xref="GI:57866172"
/db_xref="GeneID:3242821"
/translation="MSELTHELLPLNCKERHIVTRLYEVITLRI"
gene 238294..239784
/locus_tag="SERP0232"
/db_xref="GeneID:3242822"
CDS 238294..239784
/locus_tag="SERP0232"
/note="identified by match to protein family HMM PF00324"
/codon_start=1
/transl_table=11
/product="amino acid permease"
/protein_id="YP_187828.1"
/db_xref="GI:57866173"
/db_xref="GeneID:3242822"
/translation="MENKNNNVDRGNLKQNLSEKFVWAIAYGSCIGWGAFILPGDWIK
QSGPIASSIGIVIGALLMILIAVSYGALVEKFPVSGGAFAFSFLSFGRYVSFFSSWFL
TFGYVCVVALNATAFSLLIKFLLPNVLNNGKLYTVAGWDVYITEIVIATVLLIVFMLI
TIRGASVSGSLQYYFCVAMVLVVALMFIGSFFSSHFSLSHLEPLASVDKGWFQSIIMI
VSIAPWAYVGFDNIPQTAEEFNFSPNKTFKLIVYSLLAASLTYVVMLLYTGWLGTQAT
SLNGNLWLTGAVTQDAFGFIGLAVLAVAIIMGIFTGLNGFLMSSSRLLFSMGRSGIMP
TVFSKLHSKHKTPYVAIIFLVAVSLIAPWLGRTALTWIVDMSSTGVSIAYFITCLSAT
KLFSFNKQSNTYAPVYKIFGIIGSIVSFVFLCLLLIPGSPAALSIPSYIALGIWLVIG
LIFFIIRLPKLKKMNNDEMSRLILNHSEDEVLEMIHEPGQSNSTNK"
misc_feature 238366..239661
/locus_tag="SERP0232"
/note="amino acid transporter; Region: 2A0306; TIGR00909"
/db_xref="CDD:129987"
gene complement(239945..240397)
/locus_tag="SERP0233"
/db_xref="GeneID:3242823"
CDS complement(239945..240397)
/locus_tag="SERP0233"
/note="identified by similarity to OMNI:SA0631"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187829.1"
/db_xref="GI:57866174"
/db_xref="GeneID:3242823"
/translation="MFWIFNFIFSFLASLFFCVIFDAPRKLYFACGFVGACGWMVYTV
LFNGFELHTIYSSFFGSLALGLLSHYMARRKKEPVIIFMVTGIIPLVPGGLAYDATKN
LVLLHFGKAINTMLEVTLIAGAIALGLLFADQISKIVISGFARTRKGL"
misc_feature complement(<240041..240397)
/locus_tag="SERP0233"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3610"
/db_xref="CDD:226137"
gene complement(240410..241174)
/locus_tag="SERP0234"
/db_xref="GeneID:3241466"
CDS complement(240410..241174)
/locus_tag="SERP0234"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187830.1"
/db_xref="GI:57866175"
/db_xref="GeneID:3241466"
/translation="MNKDTIETSHEALIKDVVMITARILLESGAEGTRVEDTMARIAT
KLGYPESNSFVTNTVIEFVLHNEAYPRLYRIKTRDTNLIKISQANEISRQITNGTMTL
EEAKYQLEEIYVAKRDSSLPFKGIAAAIIATSFLYLQGGRLVDIITAVLAGTIGYLVV
EILDRKLHAQFIPEFIGSLVIGIISVIGHAFVPSGDLATIIIAAVMPIVPGVLITNAI
QDLFGGHMLMFTTKSLEALVTAFGIGAGVSSILILV"
misc_feature complement(240437..241171)
/locus_tag="SERP0234"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2966"
/db_xref="CDD:225514"
misc_feature complement(240542..241111)
/locus_tag="SERP0234"
/note="Protein of unknown function (DUF1212); Region:
DUF1212; pfam06738"
/db_xref="CDD:219154"
gene complement(241677..242426)
/locus_tag="SERP0235"
/db_xref="GeneID:3241467"
CDS complement(241677..242426)
/locus_tag="SERP0235"
/note="identified by similarity to OMNI:NTL01SA0564"
/codon_start=1
/transl_table=11
/product="heme peroxidase"
/protein_id="YP_187831.1"
/db_xref="GI:57866176"
/db_xref="GeneID:3241467"
/translation="MSEAAETLDGWYSLHLFYAVDWTTFRLIAEDDREAMITELETFV
KDKAVARESHQGDHAIYNITGQKADLLLWFLRPEMKELNQIENEFNKLRIADYLIPTY
SYVSVIELSNYLAGKSDEDPYENPHVKARLYPELPHSEYICFYPMDKRRNETYNWYML
PIEDRKTLMYNHGMIGRKYAGKIKQFITGSVGFDDYEWGVTLFSNDVLQFKKIVYEMR
FDETTARYGEFGSFYIGHILNIEDFKQFFSI"
misc_feature complement(241680..242426)
/locus_tag="SERP0235"
/note="putative heme peroxidase; Provisional; Region:
PRK12276"
/db_xref="CDD:237033"
gene 242597..243586
/gene="eutD"
/locus_tag="SERP0236"
/db_xref="GeneID:3241468"
CDS 242597..243586
/gene="eutD"
/locus_tag="SERP0236"
/EC_number="2.3.1.8"
/note="in Salmonella this enzyme is required for
ethanolamine catabolism; has higher affinity for CoA than
Pta"
/codon_start=1
/transl_table=11
/product="phosphotransacetylase"
/protein_id="YP_187832.1"
/db_xref="GI:57866177"
/db_xref="GeneID:3241468"
/translation="MADLLSVLQDKLSGKNVKIVLPEGEDERVLIAATQLQKTDYVSP
IVLGNEDNIKSLASKHALDLTQIEIIDPATSELKDELVDAFVERRKGKATKEQAVELL
DNVNYFGTMLVYTGKAEGLVSGAAHSTGDTVRPALQIIKTKPGVSRTSGIFFMIKGDE
QYIFGDCAINPELDAQGLAEIAVESAKSAQSFGMNPKVAMLSFSTKGSAKSDDVTKVQ
EALKLAQEKAEADQLEHVVIDGEFQFDAAIVPSVAEKKAPGAKIQGDANVFVFPSLEA
GNIGYKIAQRLGGYDAVGPVLQGLNSPVNDLSRGCSTEDVYNLSIITAAQALQ"
misc_feature 242600..243583
/gene="eutD"
/locus_tag="SERP0236"
/note="phosphotransacetylase; Reviewed; Region: eutD;
PRK09653"
/db_xref="CDD:236609"
gene 243586..244425
/locus_tag="SERP0237"
/db_xref="GeneID:3242301"
CDS 243586..244425
/locus_tag="SERP0237"
/note="identified by match to protein family HMM PF02539;
match to protein family HMM PF03099"
/codon_start=1
/transl_table=11
/product="lipoate-protein ligase A"
/protein_id="YP_187833.1"
/db_xref="GI:57866186"
/db_xref="GeneID:3242301"
/translation="MDLATKYFNQINWRYVDHSSGLEPMQSFAFDDTFSESVGKDLSC
NVVRTWIHQHTVILGIHDSRLPFLSDGIRFLTDEQGYNAIVRNSGGLGVVLDQGILNI
SLIFKGQTETTIDEAFTVMYLLISKMFEDEDVSIDTKEIEQSYCPGKFDLSINDKKFA
GISQRRVRGGIAVQIYLCIEGSGSERALMMQQFYQRALKGQTTKFHYPDIDPSCMASL
ETLLNREIKVQDVMFLLLYALKDLGANLNMDPITEDEWTRYEGYYDKMLERNAKINEK
LDF"
misc_feature 243622..244401
/locus_tag="SERP0237"
/note="Lipoate-protein ligase A [Coenzyme metabolism];
Region: LplA; COG0095"
/db_xref="CDD:223173"
gene 245118..246038
/gene="mvk"
/locus_tag="SERP0238"
/db_xref="GeneID:3242302"
CDS 245118..246038
/gene="mvk"
/locus_tag="SERP0238"
/EC_number="2.7.1.36"
/note="identified by match to protein family HMM PF00288;
match to protein family HMM TIGR00549"
/codon_start=1
/transl_table=11
/product="mevalonate kinase"
/protein_id="YP_187834.1"
/db_xref="GI:57866187"
/db_xref="GeneID:3242302"
/translation="MTRQGYGESTGKIILMGEHAVTFGQPAIAIPFNAGKIKVLIESL
DEGNYSSITSDVYDGMLYDAPEHLKSIINRFVEKSGVKEPLSVKIQTNLPPSRGLGSS
AAVAVAFVRASYDFMDQPLDDKTLIKEANWAEQIAHGKPSGIDTQTIVSNKPVWFKQG
KAETLKSLKLNGYMVVIDTGVKGSTKQAVEDVHVLCESDEYMKYVEHIGTLVHRASES
IEQHDFHHLADIFNACQEDLRHLTVSHDKIEKLLQIGKEHGAIAGKLTGGGRGGSMLL
LAENLQTAKTIVAAVEKAGAAHTWIEHLGG"
misc_feature 245142..245948
/gene="mvk"
/locus_tag="SERP0238"
/note="mevalonate kinase; Region: mevalon_kin; TIGR00549"
/db_xref="CDD:233017"
misc_feature 245373..245555
/gene="mvk"
/locus_tag="SERP0238"
/note="GHMP kinases N terminal domain; Region:
GHMP_kinases_N; pfam00288"
/db_xref="CDD:215839"
misc_feature 245766..246008
/gene="mvk"
/locus_tag="SERP0238"
/note="GHMP kinases C terminal; Region: GHMP_kinases_C;
pfam08544"
/db_xref="CDD:219894"
gene 246043..247026
/gene="mvaD"
/locus_tag="SERP0239"
/db_xref="GeneID:3242303"
CDS 246043..247026
/gene="mvaD"
/locus_tag="SERP0239"
/EC_number="4.1.1.33"
/note="identified by match to protein family HMM PF00288;
match to protein family HMM TIGR01240"
/codon_start=1
/transl_table=11
/product="mevalonate diphosphate decarboxylase"
/protein_id="YP_187835.1"
/db_xref="GI:57866188"
/db_xref="GeneID:3242303"
/translation="MVKSGKARAHTNIALIKYWGKADETYIIPMNNSLSITLDRFYTE
TKVTFDPDFTEDRLILNGNEVNAKEKEKIQNYMNIVRDLAGNRLHARIESENHVPTAA
GLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEWEKGHDDL
TSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDHVDEDLN
EAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANL
PCYFTMDAGPNVKVLVEKKNKQAVMEQFLKVFDESKIIASDIISSGVEIIK"
misc_feature 246055..246966
/gene="mvaD"
/locus_tag="SERP0239"
/note="diphosphomevalonate decarboxylase; Region:
mevDPdecarb; TIGR01240"
/db_xref="CDD:130307"
gene 247039..248115
/locus_tag="SERP0240"
/db_xref="GeneID:3242304"
CDS 247039..248115
/locus_tag="SERP0240"
/EC_number="2.7.4.2"
/note="identified by match to protein family HMM PF00288;
match to protein family HMM TIGR01220"
/codon_start=1
/transl_table=11
/product="phosphomevalonate kinase"
/protein_id="YP_187836.1"
/db_xref="GI:57866189"
/db_xref="GeneID:3242304"
/translation="MIQVKAPGKLYIAGEYAVTEPGYKSILIAVNRFVTATIEASNKV
EGSIHSKTLHYEPVKFDRNEDRIEISDVQAAKQLKYVVTAIEVFEQYVRSCNMNLKHF
HLTIDSNLADNSGQKYGLGSSAAVLVSVVKALNEFYGLELSNLYIYKLAVIANMKLQS
LSSCGDIAVSVYSGWLAYSTFDHDWVKQQMEETSVNDVLEKNWPGLHIEPLQAPENME
VLIGWTGSPASSPHLVSEVKRLKSDPSFYGDFLDQSHACVESLIQAFKTNNIKGVQKM
IRINRRIIQSMDNEASVEIETDKLKKLCDVGEKHGGASKTSGAGGGDCGITIINKVID
KNIIYNEWQMNDIKPLKFKIYHGQ"
misc_feature 247042..248112
/locus_tag="SERP0240"
/note="phosphomevalonate kinase, ERG8-type, Gram-positive
branch; Region: Pmev_kin_Gr_pos; TIGR01220"
/db_xref="CDD:130287"
gene 248326..248667
/locus_tag="SERP0241"
/db_xref="GeneID:3242305"
CDS 248326..248667
/locus_tag="SERP0241"
/note="identified by similarity to OMNI:SA0639"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187837.1"
/db_xref="GI:57866190"
/db_xref="GeneID:3242305"
/translation="MKNKFLICDECQAVNLKSLKRKLEKLDPEAEIEIGCQSYCGPGR
RKTFAFVNNRPLAALTEEELMEKVTKQLKKPRDPEEEERLRKRNEERKRRKEEQDRKL
KEKLKKHKAEK"
misc_feature <248389..248544
/locus_tag="SERP0241"
/note="Protein of unknown function (DUF1450); Region:
DUF1450; cl11488"
/db_xref="CDD:245655"
gene complement(249056..250387)
/locus_tag="SERP0242"
/db_xref="GeneID:3242306"
CDS complement(249056..250387)
/locus_tag="SERP0242"
/note="identified by match to protein family HMM PF00070;
match to protein family HMM PF02852"
/codon_start=1
/transl_table=11
/product="pyridine nucleotide-disulfide oxidoreductase
family protein"
/protein_id="YP_187838.1"
/db_xref="GI:57866191"
/db_xref="GeneID:3242306"
/translation="MKNYDLIIIGFGKAGKTLAAHAASHGQKVAVVEQSTKMYGGTCI
NIGCIPTKTLIHDGIEGSSFKEAITRKKEVVQALNNKNYQGLNSKDNIDVLNYKANFI
SNEVIELQDNNGTIQETITADKIVINTGSRANIPDIKGIDTAQNIYDSTGLLNIDYQP
QELVIIGGGYIALEFASMFANFGTHVTILERGDAIMTNEDQDIANLIVKDLQDKGVTI
NTNTSTIAFSNNKDQTIIHTNHGEISADTVLLATGRKPNTNHLGLENTDVKIGKQGEV
IVNTHLQSTVKHIYAAGDVKGGLQFTYISLDDYRIIKSHLFGDGSRTTENRGAIPYTV
FIDPPLSRVGLIASEAKLQGYDILENKVFVSNIPRHKINNDSRGLFKAVINKDTKEIL
GASLYGKESEELISLIKLAIDQHIPYTVLRDNIYTHPTMTESFNDLFLEPL"
misc_feature complement(249071..250387)
/locus_tag="SERP0242"
/note="pyridine nucleotide-disulfide oxidoreductase;
Provisional; Region: PRK07251"
/db_xref="CDD:180907"
misc_feature complement(<250286..250387)
/locus_tag="SERP0242"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:214164"
misc_feature complement(249662..249901)
/locus_tag="SERP0242"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(249083..249400)
/locus_tag="SERP0242"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene complement(250392..250814)
/locus_tag="SERP0243"
/db_xref="GeneID:3242307"
CDS complement(250392..250814)
/locus_tag="SERP0243"
/note="identified by similarity to GP:14246363"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187839.1"
/db_xref="GI:57866192"
/db_xref="GeneID:3242307"
/translation="MNLEFNIAVHVLCFLAQHDQEQFNSKELAKLTCLNPVQLRRVLA
YLTEHNYIKVQRGKAGGYQANQHTAQVDLAKLYQHFVLDKNNSQRRFTGASDSHCQIS
KKIAHTMSHYYSQEHQIILDFYKDKNITDVLADILQEG"
misc_feature complement(250398..250814)
/locus_tag="SERP0243"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG1959"
/db_xref="CDD:224870"
misc_feature complement(250575..250805)
/locus_tag="SERP0243"
/note="Transcriptional regulator; Region: Rrf2; pfam02082"
/db_xref="CDD:202106"
gene 250971..251909
/locus_tag="SERP0244"
/db_xref="GeneID:3242308"
CDS 250971..251909
/locus_tag="SERP0244"
/note="identified by match to protein family HMM PF00248"
/codon_start=1
/transl_table=11
/product="aldo/keto reductase"
/protein_id="YP_187840.1"
/db_xref="GI:57866193"
/db_xref="GeneID:3242308"
/translation="MVKQVRLGKSDVNVFPIALGTNAVGGHNLYPNLDEEQGKEVVRQ
AIDNGITLLDTAYIYGPERSEELVGQVVKEYPREKVQIATKGSHVIKENEEVVQNNDP
EYLKQQVENSLERLQVDYIDLYYIHFPDDDTPKDKAVAALKELKDEGKIKAIGVSNFS
LEQLKEANKDGYVDVVQLEYNLLHRENEEVMAYAAENNITFVPYFPLASGILAGKYDE
NQTFEDHRAERPDFQPDVFKDNVRRVKALTDIAEAHDTTIANVVLAFYLTRPSLDVVI
PGAKRAEQVVENIDAANIELSQGEIDKIDSLFPIKK"
misc_feature 250983..251891
/locus_tag="SERP0244"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature 251016..251897
/locus_tag="SERP0244"
/note="Aldo/keto reductase family; Region: Aldo_ket_red;
pfam00248"
/db_xref="CDD:215817"
misc_feature order(251028..251036,251130..251132,251145..251147,
251223..251225,251349..251354,251439..251444,
251499..251501,251580..251597,251745..251747,
251796..251807,251820..251822,251829..251834)
/locus_tag="SERP0244"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(251130..251132,251145..251147,251223..251225,
251349..251351)
/locus_tag="SERP0244"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene 252370..255051
/locus_tag="SERP0245"
/db_xref="GeneID:3242463"
CDS 252370..255051
/locus_tag="SERP0245"
/note="identified by match to protein family HMM PF03176"
/codon_start=1
/transl_table=11
/product="transporter"
/protein_id="YP_187841.1"
/db_xref="GI:57866201"
/db_xref="GeneID:3242463"
/translation="MAKLLYKLGKFIAKNKWLSVIGWLVILGVIITPLMINSPKFDSD
ITMNGLKSLDTNDKISKEFHQDSEKASMKIVFHSNKNDGLNNKDTKKDIEDALDNIRQ
NDDYIQNISNPYDSGQVNDEGDTAIANVSYVVPQTGLKDSSKHIIDKELKDVTDNHNV
QIEKTQGGAMNSEPGGTSEIVGIIVAFVILLITFGSLIAAGMPIISAIIGLGSSVGII
ALLTYIFDIPNFTLTLAVMIGLAVGIDYSLFILFRFKELKKKGVDTVEAIATAVGTAG
SAVIFAGLTVMIAVCGLSLVGIDFLAVMGFASAISVLFAVLAALTLLPALISIFHKSI
KIKDKPTKSKDPKDHSWAKFIVGKPVIAVIVSLIILILAAIPVSGMRLGIPDDSLKPT
DSSEYKAYKLISDNFGEGYNGQIVMLVNTKDGGSKSTIERDLNNMRSDLEDIDNVDTV
SKAQLTDNNNYALFTIIPEKGPNSQSTENLVYDLRDYHSQAQEKYDYGTEISGQSVIN
IDMSEKLNNAIPVFAGVIVVLAFFLLMIVFRSILVPLKAVLGFILSLMATLGFTTLVI
QHGFMGSLFGIENTGPLLAFLPVITIGLLFGLAIDYELFLMTRVHEEYSKTGDNDHSI
RVGIKESGPVIVAAALIMFSVFIAFVFQDDSAIKSMGIALGFGVLFDAFVVRMTLIPA
LTKLFGKASWYLPKWLGAVLPNVDVEGKALEEDNHHDTSSEKGHVNDKNSEYSRQDKD
NYVYQNDKRNYNRNYNDEDYNRSVHLNNHHDQHHRQHQYDNQRDDIDYESLYTQDGDH
THHDERNYNDRHYQDNYDRNDDYRHNNHDHQNDNHDYHDSNFDKTTNLYKELTDSNID
QDVLFKALMLYARENNKGVYDRYNRSSQHRHDDELRD"
misc_feature 252499..253305
/locus_tag="SERP0245"
/note="MMPL family; Region: MMPL; pfam03176"
/db_xref="CDD:217407"
misc_feature <252907..253305
/locus_tag="SERP0245"
/note="Protein export membrane protein; Region: SecD_SecF;
cl14618"
/db_xref="CDD:246677"
misc_feature 253531..254457
/locus_tag="SERP0245"
/note="MMPL family; Region: MMPL; pfam03176"
/db_xref="CDD:217407"
gene 255075..256019
/locus_tag="SERP0246"
/db_xref="GeneID:3242464"
CDS 255075..256019
/locus_tag="SERP0246"
/note="identified by match to protein family HMM PF04069"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_187842.1"
/db_xref="GI:57866202"
/db_xref="GeneID:3242464"
/translation="MLKRRSSKFLGLLATLALAIVLSACGNSGNGSGSSDDSQTSLGN
KEIEISYIASDNSTPRSLVIAEVLKKAGYDVTTTPVTASGPLYAAVSENSDSFHASGI
FPTTDKSYYDKFKSKLTIYDDKHLIDNAKVGLAVPKYVQDVDSISDLKNSDFGKSVDW
AIQGTDARNGVMQETKDELDSDNLDKYSLKESSDQDQFKKIQSAFKQQEPIVFTAMEP
SWFSKELDVKMLKDPDNIYGNNNQHIDLVFNKDFKEAHPAAYTVATRMADDWSKSDED
KLAKKIFVDNKNPEQVAKDYVDDNDNKVDEWLEGIETI"
misc_feature 255207..256004
/locus_tag="SERP0246"
/note="ABC-type proline/glycine betaine transport systems,
periplasmic components [Amino acid transport and
metabolism]; Region: ProX; cl17891"
/db_xref="CDD:248445"
misc_feature 255207..255953
/locus_tag="SERP0246"
/note="Substrate binding domain of ABC-type glycine
betaine transport system; Region: OpuAC; pfam04069"
/db_xref="CDD:217871"
gene 256369..256938
/locus_tag="SERP0247"
/db_xref="GeneID:3242465"
CDS 256369..256938
/locus_tag="SERP0247"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_187843.1"
/db_xref="GI:57866203"
/db_xref="GeneID:3242465"
/translation="MPSANQKRMIKHIHETVFILLHDYHFDEITVQKICDIAEINRST
FYRYFQDKYELLYTLPDFITQQIIAKSDTSADITTPESFEDFIYYIGNNKKIFKHLLV
SSRQADVFRSLTNVSREMMLNNPTRKRAPLAQKIRESKHPEIVADFYSSGVIEVLRRW
VENDYNYTVEEVFVTLNNVLETSLYCYDK"
misc_feature 256369..256839
/locus_tag="SERP0247"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:224228"
misc_feature 256426..256536
/locus_tag="SERP0247"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(256979..257083)
/locus_tag="SERP0248"
/db_xref="GeneID:3242466"
CDS complement(256979..257083)
/locus_tag="SERP0248"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187844.1"
/db_xref="GI:57866204"
/db_xref="GeneID:3242466"
/translation="MINIGIWPMVILALLIIANSIFMVYKTVDVKKRK"
gene 257149..257823
/locus_tag="SERP0249"
/db_xref="GeneID:3242467"
CDS 257149..257823
/locus_tag="SERP0249"
/note="identified by similarity to OMNI:SA0028; match to
protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS431mec-like transposase"
/protein_id="YP_187845.1"
/db_xref="GI:57866205"
/db_xref="GeneID:3242467"
/translation="MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHH
STVYRWVQEYAPILYQIWKKKHKKAYDKWRIDETYINIKGKWNYLYRAIDAEGHTLDI
WLRKQRDNHSAYVFIKRLIKQFGKSQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSK
YLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEI
SIMLAS"
misc_feature 257149..257799
/locus_tag="SERP0249"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3316"
/db_xref="CDD:225853"
misc_feature 257359..257670
/locus_tag="SERP0249"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
gene 258272..258748
/locus_tag="SERP0250"
/db_xref="GeneID:3242468"
CDS 258272..258748
/locus_tag="SERP0250"
/note="identified by match to protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_187846.1"
/db_xref="GI:57866206"
/db_xref="GeneID:3242468"
/translation="MYSVRQATEKDAVAIRDVATKAWYNTYLNIYAASTVNELLAASY
NETHLKKRLNEQLFLVAEEDSEIVGFANFIYGEELYLSAHYVRPESQHKGYGTRLLEA
GLKRFKDQYETVYLEVDNNNSNGIEYYQNHGFEIIRSYQPEMYGEIMDLALMKKSF"
misc_feature 258281..258739
/locus_tag="SERP0250"
/note="Acetyltransferases [General function prediction
only]; Region: RimI; COG0456"
/db_xref="CDD:223532"
misc_feature 258443..258622
/locus_tag="SERP0250"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(258521..258529,258557..258562)
/locus_tag="SERP0250"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 258840..260138
/locus_tag="SERP0251"
/db_xref="GeneID:3242469"
CDS 258840..260138
/locus_tag="SERP0251"
/note="identified by match to protein family HMM PF01966"
/codon_start=1
/transl_table=11
/product="HD domain-containing protein"
/protein_id="YP_187847.1"
/db_xref="GI:57866207"
/db_xref="GeneID:3242469"
/translation="MTLSSYATSKLTEEKVFKDPIHRFIHVQDQLIWDLIKTKEFQRL
RRIKQLGTLYLSFHTAEHSRFGHSLGVYEIVRRMIDETFIGQDAWDNTDRPLALCAAL
LHDLGHGPFSHSFEKIFNTDHEAFTQAIITGNTEVNGVLSRVSDNFPKQVADVINKTH
DNKLVISMISSQIDADRMDYLQRDAYFTGVTYGSFDMERILRLMRPSKEEVLIKDSGM
HAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKMYPKDFIPFF
EGTMTIEQYVELDEAVVLYYLKKWIHENDPILSDLSRRFINRDLFKYIPFDGSIITIS
ELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLKSNGGITEISNQSLVI
NSITGINREDHKLYYPKEMILKIKDYQIKGSIINLLNELN"
misc_feature 258876..260072
/locus_tag="SERP0251"
/note="HD superfamily phosphohydrolases [General function
prediction only]; Region: COG1078"
/db_xref="CDD:224004"
misc_feature 259023..259442
/locus_tag="SERP0251"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature order(259038..259040,259149..259154,259365..259367)
/locus_tag="SERP0251"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 259152..259154
/locus_tag="SERP0251"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
gene 260186..260701
/locus_tag="SERP0252"
/db_xref="GeneID:3243012"
CDS 260186..260701
/locus_tag="SERP0252"
/note="identified by similarity to OMNI:NTL01SA0581"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187848.1"
/db_xref="GI:57866208"
/db_xref="GeneID:3243012"
/translation="MSRLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDIE
NQKAFVDIGGMHARAEVEKGVKWITDKSQVEGEEAKAYWLCWVTTERSEQGPYYAGVT
ACYLLVNKSIRRGYKSMPEHVNMMDKSMKHQFIIDQIGDDNKQILKEFLQNHNVEMWN
NSSEELYRTFE"
misc_feature 260204..260698
/locus_tag="SERP0252"
/note="YwhD family; Region: YwhD; pfam08741"
/db_xref="CDD:149715"
gene complement(260788..261975)
/locus_tag="SERP0253"
/db_xref="GeneID:3243013"
CDS complement(260788..261975)
/locus_tag="SERP0253"
/note="identified by similarity to EGAD:165191; match to
protein family HMM PF01969"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187849.1"
/db_xref="GI:57866209"
/db_xref="GeneID:3243013"
/translation="MTKALYLDCHAGIAGDMLLSALVDLGAHPEDIESELKKLPLDQF
KLHFQKRVKQGIHAMTLNIDVKESNHHRHVNDIFKMIDDSTLPERVKYRSKKIFEIIG
QAEAKIHGMSFEEVHFHEVGAMDSIIDIIGGCIALEQLGINTLYCSAIPTGHGKIHIA
HGIYPIPAPATAEILKGIPIAHFDVQSELTTPTGAAFAKGLVSSFGPFPSATIQHIGY
GAGSKDFNFPNILRVIQFDSEFEQQDSVQVIECQIDDMTPEALGDFMNNALEQGALDA
YYTPIFMKKSRPSTQLTLICKLHDKIYFEQLILQETSSLGVRSTSVNRKILNRAFKIL
STQHGTVSIKFGLQNGKIMKMKPEYEDLKKMAKTTNQPFQVIHNEVLQQLYQTYRIGD
ILQ"
misc_feature complement(260806..261972)
/locus_tag="SERP0253"
/note="hypothetical protein; Provisional; Region:
PRK04194"
/db_xref="CDD:235249"
gene complement(261972..262748)
/locus_tag="SERP0254"
/db_xref="GeneID:3241797"
CDS complement(261972..262748)
/locus_tag="SERP0254"
/codon_start=1
/transl_table=11
/product="AIR carboxylase"
/protein_id="YP_187850.1"
/db_xref="GI:57866226"
/db_xref="GeneID:3241797"
/translation="MSHSYNSIEEVLKAVKSNQLSINDAKAQLSHYDELGFAKIDLHR
AQRQGFPEVIFGQGKTKEQITKIISSLIFHNEVILVTRVDEMKAKYILQHYPKLEYHQ
TAQLISTPLNDIPQSKYYVSVLCAGTSDLPIAEEAALTAEIMGVSVKRFYDVGVSGIH
RLLSNIHDIRKGKVSIVIAGMEGALASVVGGLVNHPIYAVPTSIGYGANLNGVTTLLS
MINSCAPGTSVLNINNGFGGGYNAAQIIHMLENKESEVSL"
misc_feature complement(261999..262730)
/locus_tag="SERP0254"
/note="NCAIR mutase (PurE)-related proteins [General
function prediction only]; Region: COG1691"
/db_xref="CDD:224605"
misc_feature complement(262011..262388)
/locus_tag="SERP0254"
/note="AIR carboxylase; Region: AIRC; smart01001"
/db_xref="CDD:214965"
gene complement(262763..263590)
/locus_tag="SERP0255"
/db_xref="GeneID:3241798"
CDS complement(262763..263590)
/locus_tag="SERP0255"
/note="identified by similarity to EGAD:49939; match to
protein family HMM TIGR00268"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187851.1"
/db_xref="GI:57866227"
/db_xref="GeneID:3241798"
/translation="MTELNTKEMKLDALLKDMQSVVIAFSGGVDSSLLLKKAIDVLGV
NYVKPVVVKSELFRNEEFELALKLGQSLGVEVLETEMSELQDANIVKNTPESWYYSKR
LMYSQLENIKNKLGFNYVLDGMIMDDLDDFRPGLKARDDFGVRSVLQEAKLYKSEVRE
LSHQHDLPVWNKPALCSLASRIPYGEELSFTKVNKVNEAEKFILSLGINHVRVRYHHN
IARIEVTEDQLTNLLKLKDSIILHLKELGFDYVTMDLEGYRTGSMNEIIDTKSTSFK"
misc_feature complement(262790..263584)
/locus_tag="SERP0255"
/note="ATP-utilizing enzymes of the PP-loop superfamily
[General function prediction only]; Region: COG1606"
/db_xref="CDD:224522"
misc_feature complement(262922..263530)
/locus_tag="SERP0255"
/note="This is a subfamily of Adenine nucleotide alpha
hydrolases superfamily. Adenine nucleotide alpha
hydrolases superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which binds
to Adenosine group. This subfamily; Region:
Alpha_ANH_like_I; cd01990"
/db_xref="CDD:238948"
misc_feature complement(order(263432..263434,263438..263440,
263498..263509,263513..263521))
/locus_tag="SERP0255"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238948"
gene complement(263610..264884)
/locus_tag="SERP0256"
/db_xref="GeneID:3241799"
CDS complement(263610..264884)
/locus_tag="SERP0256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187852.1"
/db_xref="GI:57866228"
/db_xref="GeneID:3241799"
/translation="MKVKSQVLYGKSEIEINVPDDSTIIEPQNINAIQDYESAIKNVL
RNPTNSKSLKEMVNSNDIVSIVISDITRPTPNHILVPLLIEELNHVPRENFVIINGTG
THRDQTRDELIQMLGEDIVNSVKIVHKHCSEKESLAKVGHSQYGCDVYLNKAYVESDF
KIVTGFIEPHFFAGFSGGPKGIMPGIAGLETIQTFHNAKMIGDSRSTWGNLEDNPVQD
MAREVNRMCKPDFLLNVALNKSKEITAAFAGEIFDTHKEGCAYVKEHAMFKCDQHFDI
VIASNSGYPLDQNLYQTVKGMSAASKIVKKDGHIIMVSECADGFPDHGKFAEIFKMAD
TPQGILELIHDPNFKEVDQWQVQKQASIQTFANVHVYSELTDQQLKDSMLIPTSNIEH
TIQELEHRYGRKLTIGVMPQGPLTIPYVEDKE"
misc_feature complement(264258..264860)
/locus_tag="SERP0256"
/note="Domain of unknown function (DUF2088); Region:
DUF2088; pfam09861"
/db_xref="CDD:150523"
gene 265167..266189
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/db_xref="GeneID:3241800"
CDS 265167..266189
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/EC_number="1.1.1.1"
/note="similar to zinc-dependent eukaryotic ADH enzymes
and distinct from fermentative ADHs"
/codon_start=1
/transl_table=11
/product="alcohol dehydrogenase"
/protein_id="YP_187853.1"
/db_xref="GI:57866229"
/db_xref="GeneID:3241800"
/translation="MKAAVVTKDHRVSIEEKRLRELKPGEALVKTEYCGVCHTDLHVK
NADFGDVTGVTLGHEGIGRVIEVADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETL
CRDVLNAGYTVDGAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGIE
PGQWLGVFGVGGLGNLALQYAKNVMGAKVVAFDINDDKLNFAKELGADAIINSTNVDP
IEEVNRLTNNKGLDATVITAVAKTPFNQAVDVVKAGARVVAVGLPVDKMDLDIPRLVL
DGIEVVGSLVGTRQDLREAFQFAAENKVIPKVQLRQLSEINDIFDEMEKGTITGRMVI
DMKSSH"
misc_feature 265167..266180
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/note="ethanol-active dehydrogenase/acetaldehyde-active
reductase; Provisional; Region: PRK09422"
/db_xref="CDD:181842"
misc_feature 265167..266174
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/note="Cinnamyl alcohol dehydrogenases (CAD); Region:
CAD3; cd08297"
/db_xref="CDD:176257"
misc_feature order(265275..265283,265290..265292,265599..265601,
265611..265613,265668..265670,265674..265679,
265683..265685,265740..265745,265758..265760,
265875..265886,265893..265895,265944..265952,
266016..266024,266157..266159)
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:176257"
misc_feature order(265275..265277,265281..265283,265308..265310,
265338..265340,265416..265418,265599..265601,
265950..265952,266022..266024)
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176257"
misc_feature order(265275..265277,265338..265340,265599..265601)
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176257"
misc_feature order(265308..265310,265437..265439,265443..265448,
265470..265478,265644..265649,265713..265715,
265719..265724,265728..265730,265764..265766,
265773..265778,265896..265898,265920..265922,
265926..265928,265941..265943,265947..265952,
265977..265982,265995..266021,266031..266036,
266046..266048,266058..266060,266067..266069)
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176257"
misc_feature order(265431..265433,265440..265442,265449..265451,
265473..265475)
/locus_tag="SERP0257"
/gene_synonym="adhA; adhP"
/note="structural Zn binding site [ion binding]; other
site"
/db_xref="CDD:176257"
gene 266272..266664
/locus_tag="SERP0258"
/db_xref="GeneID:3241801"
CDS 266272..266664
/locus_tag="SERP0258"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187854.1"
/db_xref="GI:57866230"
/db_xref="GeneID:3241801"
/translation="MQFKLKEDKILEFLDLNFPQQTFEKGRLLIGQNKRQPLHVYYFG
EKFLALLNVNFNTFEYIKVDEVDYNDIKKITLKDGLLFKKMFIETEDFMFNYSTSKAL
LSDFQNNNFNHFIQNKKERVIFEDGHFI"
gene 266777..266887
/locus_tag="SERP0259"
/db_xref="GeneID:3241286"
CDS 266777..266887
/locus_tag="SERP0259"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187855.1"
/db_xref="GI:57866231"
/db_xref="GeneID:3241286"
/translation="MKKTMFIIATMIFGIVYFDKYRFLLKKYKTDIIDVE"
repeat_region 267010..267046
/note="IR-left"
/rpt_type=inverted
gene 267446..268459
/locus_tag="SERP0260"
/db_xref="GeneID:3241287"
CDS 267446..268459
/locus_tag="SERP0260"
/note="RTD; identified by match to protein family HMM
PF02371"
/codon_start=1
/transl_table=11
/product="ISSep1-like transposase"
/protein_id="YP_187856.1"
/db_xref="GI:57866232"
/db_xref="GeneID:3241287"
/translation="MERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLG
PTLKQTDSLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPGLERLFSSR
YSIIALNIAEIFTHPDMVLDIDKEVLITHIFNSTDKGMSMDKATKYALQLRVIAQESY
PNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLST
AMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIM
NIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQM
SPH"
misc_feature <267935..268285
/locus_tag="SERP0260"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:33349"
misc_feature 268058..>268261
/locus_tag="SERP0260"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:202223"
gene 268675..269130
/locus_tag="SERP0261"
/db_xref="GeneID:3241296"
CDS 268675..269130
/locus_tag="SERP0261"
/note="identified by similarity to OMNI:NTL01SA0583"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187857.1"
/db_xref="GI:57866241"
/db_xref="GeneID:3241296"
/translation="MTFIIVRVKVSSKLNKNINIQTHQVLKQNGEKQRFEFTTKGFWQ
QKFADFIRYEEQIEDAKVNVTIKIEDTGVKLIRKGDINMNLHFVEGHETTTLYDVPAG
KIPLTVKTLSLKHFVTHNGGKLKIHYELYQDEQKMGSYQYEINYKEISE"
misc_feature 268705..269127
/locus_tag="SERP0261"
/note="Domain of unknown function (DUF1934); Region:
DUF1934; cl01870"
/db_xref="CDD:242756"
gene 269127..270788
/gene="argS"
/locus_tag="SERP0262"
/db_xref="GeneID:3241307"
CDS 269127..270788
/gene="argS"
/locus_tag="SERP0262"
/EC_number="6.1.1.19"
/note="catalyzes a two-step reaction, first charging an
arginine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA
synthetase"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_187858.1"
/db_xref="GI:57866242"
/db_xref="GeneID:3241307"
/translation="MSIIDQVKQTLIEEIEVSIRKANLAEDIPEIKIEIPKDPKNGDY
SSNIAMVLTKIAKRNPREIAQAIVDHLDTSKAHVKQVDIAGPGFINFYLDNQYLTAII
PEAITKGDRFGYATQSKNTNILLEYVSANPTGDLHIGHARNASVGDSLANILIAAGYN
VTREYYINDAGNQITNLARSIEARYFEALGDTSYEMPADGYNGKDIIEIGKDLAVKHP
EIKDYTDEERLKTFRQLGVDYEMEKLKKDLSDFNVHFDNWFSETSLYENGAIENTLSK
MKELGYTYEADGATWLRTSDFKDDKDRVLIKKDGNYTYFTPDTAYHYNKINRGNDILI
DLMGADHHGYINRLKASLETFGVDSDRLEIQIMQMVRLMQNGEEVKMSKRTGNAITLR
EIMDEVGIDAARYFLTMRSPDSHFDFDLELAKEQSQDNPIYYAQYAHARICSILKQAK
EQGIEVSTDADFSKINNDKAIDLLKKVAEFESTIESAAEHRAPHRLTNYIQDLAAAFH
KFYNAEKVLTDDTEKTKAYVAMIEAVRITLHNALALVGVTAPESM"
misc_feature 269133..270785
/gene="argS"
/locus_tag="SERP0262"
/note="arginyl-tRNA synthetase; Reviewed; Region: argS;
PRK01611"
/db_xref="CDD:234964"
misc_feature 269151..269405
/gene="argS"
/locus_tag="SERP0262"
/note="Arginyl tRNA synthetase N terminal domain; Region:
Arg_tRNA_synt_N; pfam03485"
/db_xref="CDD:217589"
misc_feature 269490..270284
/gene="argS"
/locus_tag="SERP0262"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature order(269502..269504,269511..269513,269517..269519,
269535..269537,269544..269546,270066..270068,
270078..270080,270147..270149,270156..270158)
/gene="argS"
/locus_tag="SERP0262"
/note="active site"
/db_xref="CDD:185675"
misc_feature 269535..269546
/gene="argS"
/locus_tag="SERP0262"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature 270267..270278
/gene="argS"
/locus_tag="SERP0262"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature 270312..270785
/gene="argS"
/locus_tag="SERP0262"
/note="Anticodon-binding domain of arginyl tRNA
synthetases; Region: Anticodon_Ia_Arg; cd07956"
/db_xref="CDD:153410"
misc_feature order(270408..270413,270414..270416,270426..270428,
270435..270437,270444..270449,270456..270461,
270468..270470,270591..270593,270618..270620,
270639..270641,270651..270653,270657..270659,
270717..270719)
/gene="argS"
/locus_tag="SERP0262"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153410"
misc_feature order(270435..270437,270444..270449,270456..270461,
270468..270470,270657..270659,270666..270677,
270717..270719,270780..270785)
/gene="argS"
/locus_tag="SERP0262"
/note="anticodon binding site; other site"
/db_xref="CDD:153410"
gene 271030..271665
/locus_tag="SERP0263"
/db_xref="GeneID:3241308"
CDS 271030..271665
/locus_tag="SERP0263"
/note="identified by match to protein family HMM PF00730"
/codon_start=1
/transl_table=11
/product="endonuclease III"
/protein_id="YP_187859.1"
/db_xref="GI:57866243"
/db_xref="GeneID:3241308"
/translation="MLSIEKLYQILYQNMGPQYWWPAETPIEMMLGAILVQNTNWNNA
DIALSRLKEETSFNAQTILKMPLESLQQVIRSSGFYKNKAKAIQALLLWLNEHHFDYS
SIAKLYSDNLRKELLTIRGIGEETADVLIVYIFKGKEFIPDSYTRRIFRKLGYQHTES
YHQLKQELTLPESFSNQDANEFHALLDNFGKNYFNGKGKQRYTFLDTYFKK"
misc_feature 271030..271662
/locus_tag="SERP0263"
/note="Uncharacterized protein related to Endonuclease III
[DNA replication, recombination, and repair]; Region:
COG2231"
/db_xref="CDD:32412"
misc_feature 271111..271599
/locus_tag="SERP0263"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(271141..271149,271156..271158,271276..271278)
/locus_tag="SERP0263"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 271384..271407
/locus_tag="SERP0263"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(271414..271416,271576..271578,271588..271590)
/locus_tag="SERP0263"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 271456..271458
/locus_tag="SERP0263"
/note="active site"
/db_xref="CDD:28938"
gene 271720..272472
/locus_tag="SERP0264"
/db_xref="GeneID:3241309"
CDS 271720..272472
/locus_tag="SERP0264"
/note="identified by match to protein family HMM PF00376"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_187860.1"
/db_xref="GI:57866244"
/db_xref="GeneID:3241309"
/translation="MKERFSPKMLSDITGVSIRTLHYYHEKGLLVPQQMSANGYRYYN
VQDISKLQYILFLKELDLTLKQIQIYFEGDSDFRTKILHDNFYHIVKKRDRLNDIICT
LEHHFHQDNEEIEVTTMQNFNLNEQYEKEAASKYGDTHYYQAYKDKQKSKDESEQQNH
FEEINKQLNMFFDDMNQLYLNKVSILEASGKIKKLLCILKEQVPNCDNQFLEYIAQIY
IEDERFVKFINKQRERGLNLYISDAIKTFIKL"
misc_feature 271732..272037
/locus_tag="SERP0264"
/note="Helix-Turn-Helix DNA binding domain of the
transcription regulators TipAL, Mta, and SkgA; Region:
HTH_TipAL-Mta; cd01106"
/db_xref="CDD:133381"
misc_feature 271732..271938
/locus_tag="SERP0264"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature order(271735..271743,271783..271785,271834..271842)
/locus_tag="SERP0264"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133381"
misc_feature order(271876..271878,271885..271887,271897..271902,
271927..271929,271963..271965,271975..271977,
271993..271995,272005..272007,272014..272019)
/locus_tag="SERP0264"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133381"
misc_feature 272098..272460
/locus_tag="SERP0264"
/note="TipAS antibiotic-recognition domain; Region: TipAS;
pfam07739"
/db_xref="CDD:219546"
gene 272481..272732
/locus_tag="SERP0265"
/db_xref="GeneID:3241310"
CDS 272481..272732
/locus_tag="SERP0265"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187861.1"
/db_xref="GI:57866245"
/db_xref="GeneID:3241310"
/translation="MSGTSLIVSDIFSILPIDTYIVKLIPIQRNSTRNSTDKASWGWG
PNIRKFNEKFYRQSKLGLGPQHKEIQREILQTKQVGAPT"
gene 272919..273806
/locus_tag="SERP0266"
/db_xref="GeneID:3241311"
CDS 272919..273806
/locus_tag="SERP0266"
/note="identified by match to protein family HMM PF01497"
/codon_start=1
/transl_table=11
/product="iron ABC transporter substrate-binding protein"
/protein_id="YP_187862.1"
/db_xref="GI:57866246"
/db_xref="GeneID:3241311"
/translation="MKSKLWIVICALIVVLAACSQDANHSSNNKDTEKSDKKYHRIVS
LIPSNTEILYRLGIGEDIVGVSTVDDYPKDVKKGKKQFDAMNLNKEELIKAKPDLILA
HESQKNSAGKVLKSLKDKGVKVVYVKDAQSIDETYDTFKSIGKLTDREKQAKELVDET
KHNVDKIINSIPKHHKKQEVFMEVSSKPDIYTAGKDTFFNDMLEKLDAKNSFDDVKGW
KSVSKESIIKRNPDILISTEGKSKSDYIEMIKKRGGFDKINAVKNTRIETVDGDEVSR
PGPRIDEGLKDLKDEIYKK"
misc_feature 272922..273803
/locus_tag="SERP0266"
/note="ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism]; Region: FepB; COG0614"
/db_xref="CDD:223687"
misc_feature 273027..273626
/locus_tag="SERP0266"
/note="Periplasmic binding protein YvrC. These proteins
are predicted to function as initial receptors in ABC
transport of metal ions in eubacteria and archaea. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct...; Region: YvrC;
cd01143"
/db_xref="CDD:238563"
misc_feature 273138..273140
/locus_tag="SERP0266"
/note="putative binding site residues; other site"
/db_xref="CDD:238563"
gene 274083..275027
/locus_tag="SERP0267"
/db_xref="GeneID:3241312"
CDS 274083..275027
/locus_tag="SERP0267"
/note="identified by match to protein family HMM PF01032"
/codon_start=1
/transl_table=11
/product="iron ABC transporter permease"
/protein_id="YP_187863.1"
/db_xref="GI:57866247"
/db_xref="GeneID:3241312"
/translation="MNKYRSVIIWLFILILSMSLSLCWDVGKLDDVFNQTILFQVRLP
RLLEAMLTGAVLTLAGQVYQIVLNNPLADSFTLGLASGASLGSGIALFLGLSFLWFPI
FSIIFSLITLLLVLSVSAMLAKGYPVQMLILTGLLLGALLNALLYLLVLINPKKMNPI
ASYLFGGFSSAEYQDVMIISMIASVAIIVLFLMQKGIKLLQVGELKSQSLGLNVQQVT
YIVLIVASIMTAVVVAYVGVIGFIGMIIPQLIRKFYWRYQIGLQMLLNIIIGAVVMIM
ADFIGSTMIQPIQIPVGIVMALLGVPVLFYILVKQTNI"
misc_feature 274179..>274301
/locus_tag="SERP0267"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cl00462"
/db_xref="CDD:241879"
misc_feature <274542..275006
/locus_tag="SERP0267"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(274605..274607,274779..274781,274791..274793,
274929..274931,274953..274955)
/locus_tag="SERP0267"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature order(274653..274658,274662..274670,274674..274679,
274683..274700,274704..274712,274833..274835,
274857..274859)
/locus_tag="SERP0267"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature <274677..275015
/locus_tag="SERP0267"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:236720"
gene 275086..275814
/locus_tag="SERP0268"
/db_xref="GeneID:3241313"
CDS 275086..275814
/locus_tag="SERP0268"
/note="identified by match to protein family HMM PF00702;
match to protein family HMM TIGR01509; match to protein
family HMM TIGR01549"
/codon_start=1
/transl_table=11
/product="HAD superfamily hydrolase"
/protein_id="YP_187864.1"
/db_xref="GI:57866248"
/db_xref="GeneID:3241313"
/translation="MNLNCIKAIVFDLEGTLLDRVKSREKFIEEQYERFHDYFIHVQL
ADYKNKFIELDDDEDNDKPDLYKEIIKQFHIDRLKWRDLFNDFEMHFYRYVFPYYDTL
YTLEKLSKHHYMIGVIANGKSKIKQFRLHSLGIMHVINYLTTSETVGYRKPHPKIFED
MIDQLGVKPSEIMYVGDDALNDVAPARAMGMVSVWYKQEDAELEPLTEEVDYTITTIE
ELLKILPDNFETEGEEQHGNGFNY"
misc_feature 275101..275757
/locus_tag="SERP0268"
/note="Predicted hydrolase (HAD superfamily) [General
function prediction only]; Region: COG1011"
/db_xref="CDD:223943"
misc_feature 275338..275670
/locus_tag="SERP0268"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 275440..275442
/locus_tag="SERP0268"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 275792..276589
/locus_tag="SERP0269"
/db_xref="GeneID:3241151"
CDS 275792..276589
/locus_tag="SERP0269"
/note="identified by match to protein family HMM PF00561"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_187865.1"
/db_xref="GI:57866258"
/db_xref="GeneID:3241151"
/translation="MAMDLITKQDGTTLHYSTMGQGYPVVLVHTAFDNYAVFNDLAKV
LAKSFQVVLIDLRGHGYSDKPRNIEFYDFADDIKFLLDAIYIDEAAFIGHEMGALIVA
DMSVRNPGYVSSIILVNPTSIEGELPEERLFRKYAHKIRNWEDDKQEKFLDKRRYYKA
RKMNKFLKHVVDTNSISTKEEIQAVKDVFKSEGIADVFKHVQVPTLIVAGEHGERTTT
LEAKEVADLIQHSEFNVYQHSSVYPFVEEQAQFTQESTNFIHQYAPK"
misc_feature 275864..276553
/locus_tag="SERP0269"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:221720"
misc_feature <275864..276037
/locus_tag="SERP0269"
/note="Putative lysophospholipase; Region: Hydrolase_4;
pfam12146"
/db_xref="CDD:221442"
gene 276794..277303
/locus_tag="SERP0270"
/db_xref="GeneID:3241152"
CDS 276794..277303
/locus_tag="SERP0270"
/note="identified by similarity to OMNI:SA0669"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187866.1"
/db_xref="GI:57866259"
/db_xref="GeneID:3241152"
/translation="MKKLITSLLVLGLVLTGVSVGNNVEAATGNSMKTVQQLNKGDKS
LENVKIGESMKSVLKKYSHPIYSYNPNSNEKYYEFRTDKGVLLVTANGKKERGNVTRV
SMTYNNANGPSYKAVKQQLGHKAISRVHYNNVTGNFGYIQKGQASYQFSSNSPKDKNV
KLYRIDLNK"
gene 277340..277462
/locus_tag="SERP0271"
/db_xref="GeneID:3241153"
CDS 277340..277462
/locus_tag="SERP0271"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187867.1"
/db_xref="GI:57866260"
/db_xref="GeneID:3241153"
/translation="MKFEEFKDEIIICKMDFTLALLFILVANDDMINHYVQVKL"
gene 277548..278267
/locus_tag="SERP0272"
/db_xref="GeneID:3241154"
CDS 277548..278267
/locus_tag="SERP0272"
/note="identified by similarity to OMNI:SA0670"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187868.1"
/db_xref="GI:57866261"
/db_xref="GeneID:3241154"
/translation="MRTNDKVLLENINDYFSHKGMSPHLIDDIKEKYRQDIKKSEEKD
QDYIEYRGKSPAQLILTIQRNLFALQLNPMIFFIINFILISYLYDKQYVPFQAITGIS
LFYCLVIFPITLILYVRIAKKNYLYSNKYEMRTGIIIGIIALILVIMQGFHFNWAIIP
ISIYGHQFVFFAGIILSLVGIFFKRIEFVGVGLLFCQKTIDAMVTNPEIAQFFSLAIW
IILVVLIIFYTIRLSARTKSS"
gene 278475..279251
/locus_tag="SERP0273"
/db_xref="GeneID:3241155"
CDS 278475..279251
/locus_tag="SERP0273"
/note="identified by match to protein family HMM PF00561"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_187869.1"
/db_xref="GI:57866262"
/db_xref="GeneID:3241155"
/translation="MNKIQICNQIELNYIDEGEGIPIILIHGLDGNLAGFKDLKNELK
KQYRVITYDVRGHGKSSRTESYELKDHVEDLNDLMRALNIDSAHILGHDMGGIIASEF
TEKYQYKVITLTIVSAKSEDIANGFNKLMVDYQEELAGFNKSEAMIILFSKLFKEKDK
AMKWYQSQKLYNRPTPEESAIAVRALLNIKDLTRVHHNVSIPTLIVNGKYDPLIQNKS
HYDMDQYYDQVTKIVFDNSGHAPHIEEPEKFLKLYLDFVS"
misc_feature 278523..>278771
/locus_tag="SERP0273"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:214205"
misc_feature 278541..279230
/locus_tag="SERP0273"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene complement(279424..279798)
/gene="sarA"
/locus_tag="SERP0274"
/db_xref="GeneID:3241156"
CDS complement(279424..279798)
/gene="sarA"
/locus_tag="SERP0274"
/note="identified by similarity to EGAD:42500; match to
protein family HMM TIGR01889"
/codon_start=1
/transl_table=11
/product="accessory regulator A"
/protein_id="YP_187870.1"
/db_xref="GI:57866263"
/db_xref="GeneID:3241156"
/translation="MAISKINDCFELLAMVTYADRLKGIIKKEFSISFEEFAVLTYIS
ENKEEEYYLKDIINHLNYKQPQVVKAVKNLSQENYFNKKRNEHDERTVLILVDSKQRK
KIDDLLKRVNNRITEANNENEV"
misc_feature complement(279451..279771)
/gene="sarA"
/locus_tag="SERP0274"
/note="staphylococcal accessory regulator family; Region:
Staph_reg_Sar; TIGR01889"
/db_xref="CDD:130944"
misc_feature complement(279445..279762)
/gene="sarA"
/locus_tag="SERP0274"
/note="Transcriptional regulators [Transcription]; Region:
MarR; COG1846"
/db_xref="CDD:224759"
gene complement(280211..281164)
/locus_tag="SERP0275"
/db_xref="GeneID:3241157"
CDS complement(280211..281164)
/locus_tag="SERP0275"
/note="identified by similarity to GP:2879913"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187871.1"
/db_xref="GI:57866264"
/db_xref="GeneID:3241157"
/translation="MTKQRIVISSLLFIFILTTCSFSYITFSKLTSKTEDIKNIKTIK
AKPKLLLSTTGIQAPLNSYIFYYTPTLGQLQKLLVKNHSKVSKNTPVLEYYNYEKDHL
YEELQNTLSNERNNKTLNSKNDLHYYSFLNQLKLQMIQTKSSIKSTLFSPINGSISYI
NSIPSKPNEKIVQINSNERIIRANISESELNLLKINQNISVTSSDNTQFTSKIKEISN
IPSKIKNGVSYYDILLSTQPNHQIGTHFKIKLASNDIELPTSAIVQKRYVLILKNGKI
TKREVTYKKSLKSGYINITKGLLIDEKVVKNPTSKLINIYI"
misc_feature complement(280229..280951)
/locus_tag="SERP0275"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:233547"
misc_feature complement(280451..280723)
/locus_tag="SERP0275"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:222128"
gene complement(281490..282383)
/locus_tag="SERP0276"
/db_xref="GeneID:3241158"
CDS complement(281490..282383)
/locus_tag="SERP0276"
/note="identified by similarity to OMNI:NTL01SA0594; match
to protein family HMM PF04657"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187872.1"
/db_xref="GI:57866265"
/db_xref="GeneID:3241158"
/translation="MLLPIQTSINSRLSQFTRSSFYASTISFAVGTICLLVLNIIIHP
QVLTPEFFSKQTLNYTWVLGGLLGVIYLTGNLLLLPRLGAALTVVITVTGQIIMGVII
DTFGLLGAHQQSFTLFKGVGIIFLITGIIFMNYVRRHPVNRHKNTPIVFWLLIGFVFG
FAPPIQTTINSTLAQHTHSSIFASLISFSVGTIALFILTLVFNRSLKISSTHKTLGKI
KSIYFIGGILGMAFVTSNIILMPFLGAALTTIIAMMGQMIMGIIIDHFGLLGSPKNKI
TSRKLGGLLCIAIGIILLRLF"
misc_feature complement(281988..282383)
/locus_tag="SERP0276"
/note="Protein of unknown function, DUF606; Region:
DUF606; pfam04657"
/db_xref="CDD:218193"
misc_feature complement(281544..281933)
/locus_tag="SERP0276"
/note="Protein of unknown function, DUF606; Region:
DUF606; pfam04657"
/db_xref="CDD:218193"
gene 282382..282486
/locus_tag="SERP0277"
/db_xref="GeneID:3240662"
CDS 282382..282486
/locus_tag="SERP0277"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187873.1"
/db_xref="GI:57866274"
/db_xref="GeneID:3240662"
/translation="MPTKIPKRYRKNNDKNQLSQFNMIIIPFIIMFLK"
gene 282518..282664
/locus_tag="SERP0278"
/db_xref="GeneID:3240663"
CDS 282518..282664
/locus_tag="SERP0278"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187874.1"
/db_xref="GI:57866275"
/db_xref="GeneID:3240663"
/translation="MNVPRCHTADTILMNHYNKMHIKQVLELKKARHHFEFDISLHIN
KRTM"
gene complement(282773..282997)
/locus_tag="SERP0279"
/db_xref="GeneID:3240664"
CDS complement(282773..282997)
/locus_tag="SERP0279"
/note="identified by similarity to OMNI:SA0676"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187875.1"
/db_xref="GI:57866276"
/db_xref="GeneID:3240664"
/translation="MSKTLELVFKSNLNKPVKLLLPDFNAITTEQLIKESMNQLLELD
ILRFSLGKPVKIYAAQLIDKSTTVIFEDKN"
misc_feature complement(282785..282991)
/locus_tag="SERP0279"
/note="Protein of unknown function (DUF2922); Region:
DUF2922; pfam11148"
/db_xref="CDD:151591"
gene complement(283013..283219)
/locus_tag="SERP0280"
/db_xref="GeneID:3240565"
CDS complement(283013..283219)
/locus_tag="SERP0280"
/note="identified by similarity to OMNI:NTL01SA0596"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187876.1"
/db_xref="GI:57866277"
/db_xref="GeneID:3240565"
/translation="MNEVNQVTIIFTQIKHNSEGKVVEHKRRFSNINPLVSNDQIKSF
RSIIERISGEEYDKVEIVKTESLI"
gene 283943..286345
/locus_tag="SERP0281"
/db_xref="GeneID:3240566"
CDS 283943..286345
/locus_tag="SERP0281"
/note="subunit A of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit A"
/protein_id="YP_187877.1"
/db_xref="GI:57866278"
/db_xref="GeneID:3240566"
/translation="MSLVYLMATNLLVMLIVLFTLSHRQLRKVAGYVALIAPIVTSTY
FIMKIPDVIRNKFIAVRLPWMPSIDINLDLRLDGLSLMFGLIISLIGVGVFFYATQYL
SHSTDNLPRFFIYLLLFMFSMIGIVIANNTILMYVFWELTSISSFLLISYWYNNGESQ
LGAIQSFMITVFGGLALLTGFIILYIITGTNTITDILNQRNAISRHPLFIPMILMLLL
GAFTKSAQFPFHIWLPKAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNVYIYT
VTFVGLITMLFGSLTALRQYDLKGILAYSTISQLGMIMTMVGLGGGYAQHTSDELSKF
YILVLFAGLFHLMNHAVFKCALFMGVGIIDHESGTRDIRLLNGMRKVFPKMHIVMLLA
ALSMAGVPFLNGFLSKEMFLDSLTKANELDQYGFVLTFVIISIGVIASILTFTYALYM
IKETFWGNYNIEKFKRKQIHEPWLFSLPAVILMLLIPVIFFVPNVFGNFVILPATRSV
SGIGAEVDAFVPHISQWHGVNLPLILSIVVIIIGLILALVVNWKEVTHQIIKSASITD
GYRKIYREFELYSARGIRALMNNKLNYYIMITLFIFVAIVVYGYLTVGFPHVHQLHIS
SFGPLEVILSVVTLIIGISLIFIRQRLTMVVLNGMIGFAVTLYFIAMKAPDLALTQLV
VETITTILFIVSFSRLPNIPRVKANLKKETFKIIVSLVMALTVVSLIFVAQQADGMPS
IAKFYEDAYELTGGKNIVNAILGDFRALDTMFEGLVLIIAGLGIYTLLNYKDRRGQDE
RE"
misc_feature 283943..286342
/locus_tag="SERP0281"
/note="putative monovalent cation/H+ antiporter subunit A;
Reviewed; Region: PRK12646"
/db_xref="CDD:183646"
misc_feature 284126..284296
/locus_tag="SERP0281"
/note="NADH-Ubiquinone oxidoreductase (complex I), chain 5
N-terminus; Region: Oxidored_q1_N; pfam00662"
/db_xref="CDD:109709"
misc_feature 284327..285187
/locus_tag="SERP0281"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
misc_feature 285827..286321
/locus_tag="SERP0281"
/note="Multisubunit Na+/H+ antiporter, MnhB subunit
[Inorganic ion transport and metabolism]; Region: MnhB;
COG2111"
/db_xref="CDD:225022"
gene 286332..286757
/locus_tag="SERP0282"
/db_xref="GeneID:3240567"
CDS 286332..286757
/locus_tag="SERP0282"
/note="subunit B of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit B"
/protein_id="YP_187878.1"
/db_xref="GI:57866279"
/db_xref="GeneID:3240567"
/translation="MKENDVVLKSVTKIVVFILLTFGFYVFFAGHNNPGGGFIGGLIF
SSAFILMFLAFDVNEVLKSLPIDFKKLMIIGSLISVATASVPMFFGKPFLYQTEANVT
FPLLGHVHVTTVTLFELGILLTVVGVIVTVMLSISGGRS"
misc_feature 286332..286754
/locus_tag="SERP0282"
/note="putative monovalent cation/H+ antiporter subunit B;
Reviewed; Region: PRK12574"
/db_xref="CDD:183603"
gene 286754..287098
/locus_tag="SERP0283"
/db_xref="GeneID:3241843"
CDS 286754..287098
/locus_tag="SERP0283"
/note="subunit C of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit C"
/protein_id="YP_187879.1"
/db_xref="GI:57866280"
/db_xref="GeneID:3241843"
/translation="MNLILLLVIGFLVFIGTYMILSINLIRIVIGISIYTHAGNLIIM
SMGKYGPHMSEPLIQGHAQNFVDPLLQAIVLTAIVIGFGMTAFLLVLIYRTYRVTKED
EISALKGDEDDE"
misc_feature 286802..287095
/locus_tag="SERP0283"
/note="putative monovalent cation/H+ antiporter subunit C;
Reviewed; Region: PRK12660"
/db_xref="CDD:183660"
gene 287091..288590
/locus_tag="SERP0284"
/db_xref="GeneID:3241844"
CDS 287091..288590
/locus_tag="SERP0284"
/note="subunit D of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; contains an oxidoreductase domain; catalyzes the
transfer of electrons from NADH to ubiquinone; in S.
meliloti it is known to be involved specifically with K+
transport"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit D"
/protein_id="YP_187880.1"
/db_xref="GI:57866281"
/db_xref="GeneID:3241844"
/translation="MSNLIILPMLLPFVCALILVFTKNKNRISKILSITTMIVNTMIS
IALLIYVVNHKPITLDFGGWKAPFGIQFLGDSLSLLMVSVSSFVVTLIMAYGFGRGEK
RVNRFHLPTFILLLTVGVIGSFLTSDLFNLYVMFEIMLLASFVLVTLGQSVEQLRAAI
VYVVLNILGSWLLLLGIGMLYKTVGTLNFSHLAMRLNHMENNQTITMISLVFLVAFSS
KAALVIFMWLPKAYAVLNTELAALFAALMTKVGAYALIRFFTLLFDHHPSVTHTLLVF
MACITMIIGAFGVIAYKDIKKIAAYQVILSIGFIILGLGSHTISGVNGAIFYLANDII
VKTLLFFVIGSLVYMSGYRNYQYLSGLAKREPFFGVAFVVVIFAIGGVPPFSGFPGKV
LIFQGAITNGNYIGLALMIVTSLIAMYSLFRVMFIMYFGDADGEQVQFRPLPIYRKGL
LSVLVVVVLAMGIAAPVVLKVTEDATNLNMKEDVFQKNVNTHLKEVNHK"
misc_feature 287091..288575
/locus_tag="SERP0284"
/note="putative monovalent cation/H+ antiporter subunit D;
Reviewed; Region: PRK12663"
/db_xref="CDD:237163"
misc_feature 287469..288284
/locus_tag="SERP0284"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 288587..289069
/locus_tag="SERP0285"
/db_xref="GeneID:3241332"
CDS 288587..289069
/locus_tag="SERP0285"
/note="subunit E of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; in S. meliloti it is known to be involved
specifically with K+ transport"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit E"
/protein_id="YP_187881.1"
/db_xref="GI:57866290"
/db_xref="GeneID:3241332"
/translation="MKQVVLNIVIAFLWVLFQDEDEFKFTTFFAGFLIGLIVIYILHR
FFGEEFYLKKIWVAIKFLAVYLYQLITSSISTINYILFKTNEVNPGLLTYETSLKSNW
AITFLTILIIITPGSTVIRISKNTNKFFIHSIDVSEKDKENLLKSIKQYEDLILEVTR
"
misc_feature 288587..289066
/locus_tag="SERP0285"
/note="putative monovalent cation/H+ antiporter subunit E;
Reviewed; Region: PRK08965"
/db_xref="CDD:181598"
gene 289066..289368
/locus_tag="SERP0286"
/db_xref="GeneID:3241333"
CDS 289066..289368
/locus_tag="SERP0286"
/note="subunit F of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit F"
/protein_id="YP_187882.1"
/db_xref="GI:57866291"
/db_xref="GeneID:3241333"
/translation="MIEMFTQIFIISALVIFGMALLVCLVRLIKGPTTADRVVSFDAS
SAVVMSIVGVMSVIFNSVSYLDSIMLIAIISFVSSVSISRFIGEGRVFNGNHKRHR"
misc_feature 289066..289365
/locus_tag="SERP0286"
/note="putative monovalent cation/H+ antiporter subunit F;
Reviewed; Region: PRK12657"
/db_xref="CDD:183657"
gene 289343..289807
/locus_tag="SERP0287"
/db_xref="GeneID:3241334"
CDS 289343..289807
/locus_tag="SERP0287"
/note="subunit G of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit G"
/protein_id="YP_187883.1"
/db_xref="GI:57866292"
/db_xref="GeneID:3241334"
/translation="MEIIKDIVSLIASILIFLGSIIALISAIGIVKFQDVFLRSHAST
KSSTLSVLLTVVGVLIYFIVNSGFFSVRLLLSLVFINLTSPVGMHLISRAAYRNGAYM
YRKDDASRQSTILLSQKEFNTPEELKKRAKLREERREKLYYKEKEYINKMDD"
misc_feature 289343..289714
/locus_tag="SERP0287"
/note="putative monovalent cation/H+ antiporter subunit G;
Reviewed; Region: PRK12586"
/db_xref="CDD:237147"
gene 290114..290221
/locus_tag="SERP0288"
/db_xref="GeneID:3241471"
CDS 290114..290221
/locus_tag="SERP0288"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187884.1"
/db_xref="GI:57866180"
/db_xref="GeneID:3241471"
/translation="MSVNSYVLTGMTLLLLFHFFSVAVDNLATFYCFDD"
gene 290256..292295
/locus_tag="SERP0289"
/db_xref="GeneID:3241472"
CDS 290256..292295
/locus_tag="SERP0289"
/note="identified by match to protein family HMM PF00999"
/codon_start=1
/transl_table=11
/product="Na+/H+ antiporter"
/protein_id="YP_187885.1"
/db_xref="GI:57866181"
/db_xref="GeneID:3241472"
/translation="MEIFETLLIFVALVIVSSFVHTFIPKVPLAFIQIFLGMILYLTP
IPVEFNFDSELFMVTLIAPLLFVEGVNVSRVHLRKYIKPVMMMALGLVITTVIGVGLF
IHWIWPELPIGAAFAIAAILCPTDAVAVQAITKGKVLPKGSMTILEGESLLNDAAGII
SFKIAVGVLITGTFSIFDAIQQFLIASIGGAIVGLIIGMALVRFRLTLMRRGIENINM
FTFIQLLTPFVTYLIAELFHASGIIAAVVAGLVHGFERDRIAQTRTQLQMSYNHTWSI
LGYVLNGFVFSILGFLVPEVIVKIIKTEPHNLLFLIVITLLVALAVYLFRFVWVYVLY
PYFYLSVSPFQKMISKNDEDKVTESKPKRSLYALIMTLCGVHGTISLAIALTLPYLLA
NHETFAYRNDLLFIASGMVILSLIIAQVILPLVTPDSPEVKIGNMSFKEARIYILEHV
IDYLNQKSTFETSYRYGNVIKDYHDKLTFLKTVEKEDENSKELERLQKIAFNVETKTL
EKLVDDGEITESVLENYMRYAERTEVYKQASLLRRIIVGLRGMLLKRRVKTKINSASS
LSVTDNLLELGKINKLVHYNVVSRLAKEATTDNKLEVGMICDGYLMRIDNLTPNNFFN
SRHEDTLTKIKLNALREQRRILRELIENDEITEGTALKLRESINYDEMVIVDSMT"
misc_feature 290256..291533
/locus_tag="SERP0289"
/note="NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism]; Region: NhaP; COG0025"
/db_xref="CDD:223104"
misc_feature 290274..>291008
/locus_tag="SERP0289"
/note="Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: KefB;
cl10482"
/db_xref="CDD:245312"
gene complement(293030..293959)
/gene="sitC"
/locus_tag="SERP0290"
/db_xref="GeneID:3241473"
CDS complement(293030..293959)
/gene="sitC"
/locus_tag="SERP0290"
/note="identified by similarity to GP:1617430; match to
protein family HMM PF01297"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_187886.1"
/db_xref="GI:57866182"
/db_xref="GeneID:3241473"
/translation="MKKILALAIAFLIILAACGNHSNHEHHSHEGKLKVVTTNSILYD
MVKRVGGNKVDVHSIVPVGQDPHEYEVKPKDIKALTDADVVFYNGLNLETGNGWFEKA
LDQAGKSTKDKNVIAASNNVKPIYLNGEEGNKNKQDPHAWLSLENGIKYVKTIQKSLE
HHDKKDKSTYEKQGNAYISKLEELNKDSKNKFDDIPKNQRAMMTSEGAFKYFAQQFDV
KPGYIWEINTEKQGTPGQMKQAIKFVKDNHLKHLLVETSVDKKAMQSLSEETKKDIYG
EVFTDSIGKEGTKGDSYYKMMKSNIDTIHGSMK"
misc_feature complement(293033..293866)
/gene="sitC"
/locus_tag="SERP0290"
/note="Metal binding protein PsaA. These proteins have
been shown to function as initial receptors in ABC
transport of Mn2+ and as surface adhesins in some
eubacterial species. They belong to the TroA superfamily
of periplasmic metal binding proteins that...; Region:
PsaA; cd01137"
/db_xref="CDD:29740"
misc_feature complement(293048..293857)
/gene="sitC"
/locus_tag="SERP0290"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:201717"
misc_feature complement(order(293117..293119,293342..293344,
293540..293542,293759..293761))
/gene="sitC"
/locus_tag="SERP0290"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29740"
gene complement(293956..294792)
/gene="sitB"
/locus_tag="SERP0291"
/db_xref="GeneID:3241474"
CDS complement(293956..294792)
/gene="sitB"
/locus_tag="SERP0291"
/note="identified by match to protein family HMM PF00950"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_187887.1"
/db_xref="GI:57866183"
/db_xref="GeneID:3241474"
/translation="MLDFINHLLSYQFLNRALITSILVGIVCGTMGSIIVLRGLSLMG
DAMSHAVLPGVALSFLFNIPMFIGALVTGMLASLFIGFITSNSKTKPDAAIGISFTAF
LASGVIIISLINSTTDLYHILFGNLLAITHQSFWTTIVITVLVILLIIIFYRPLMIST
FDATFSRMSGLNTTLIHYFVMLLLALVTVASIQTVGIILVVALLITPASTAFLISKQL
YAMMVIASIISVISSIIGLYFSYIYNIPSGATIVICTFMIYIVTLSITRIKNKQKRSA
LT"
misc_feature complement(293980..294792)
/gene="sitB"
/locus_tag="SERP0291"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:224033"
misc_feature complement(294004..294747)
/gene="sitB"
/locus_tag="SERP0291"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(294139..294141,294160..294162,
294286..294294,294298..294315,294319..294324,
294328..294336,294340..294345,294679..294687,
294697..294699))
/gene="sitB"
/locus_tag="SERP0291"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(294004..294006,294013..294018,
294025..294027,294034..294039,294046..294048,
294193..294195,294421..294423,294430..294435,
294460..294462,294466..294471,294478..294480,
294487..294492,294499..294504,294511..294516,
294520..294522,294661..294663,294676..294678,
294682..294684))
/gene="sitB"
/locus_tag="SERP0291"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(294055..294057,294070..294072,
294205..294207,294217..294219,294391..294393,
294460..294462))
/gene="sitB"
/locus_tag="SERP0291"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(294793..295539)
/gene="sitA"
/locus_tag="SERP0292"
/db_xref="GeneID:3241475"
CDS complement(294793..295539)
/gene="sitA"
/locus_tag="SERP0292"
/note="identified by similarity to GP:1617428; match to
protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187888.1"
/db_xref="GI:57866184"
/db_xref="GeneID:3241475"
/translation="MLEVNHLNLFLGKKHILKDITFSLPINGEIIGIVGPNGAGKSSL
LKAFIGEFKATGKHTLYDHPIHTQLRYITYIPQKAHIDLDFPIKVDQVILSGCYEDIG
WFKKASVVEKTKLNQLLNDLELDHIRHRQIAELSGGQLQRVLVARALMSNSDIYCLDE
PFVGIDIYSEQLIMKKIKHLRHMGKLILIVHHDLSKADQYFDRILLLNQSLQFLGPTK
EALSSERLNATFINYKDDSLLTLSSQGSTN"
misc_feature complement(294850..295539)
/gene="sitA"
/locus_tag="SERP0292"
/note="ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism]; Region: ZnuC;
COG1121"
/db_xref="CDD:224046"
misc_feature complement(294895..295533)
/gene="sitA"
/locus_tag="SERP0292"
/note="ATP-binding cassette domain of the metal-type
transporters; Region: ABC_Metallic_Cations; cd03235"
/db_xref="CDD:213202"
gene 295659..296303
/gene="sirR"
/locus_tag="SERP0293"
/db_xref="GeneID:3241476"
CDS 295659..296303
/gene="sirR"
/locus_tag="SERP0293"
/note="identified by similarity to GP:1617434; match to
protein family HMM PF01325; match to protein family HMM
PF02742"
/codon_start=1
/transl_table=11
/product="iron-dependent repressor"
/protein_id="YP_187889.1"
/db_xref="GI:57866185"
/db_xref="GeneID:3241476"
/translation="MLTEEKEDYLKAILTNDGDVSFVSNKKLSQFLNIKPPSVSEMVG
RLEKEGYVETKHYKGARLTEEGLKQTLDIIKRHRLLELFLIEILQYNWEEVHQEAEIL
EHRISDLFVERLDKILNFPKTCPHGGVIPRGDQYKEIFTTSILNFEPGERVTVRRVRD
KTELLVYLSSKDIYIGNTVEIVSKDDTNKVIILKRNDIVTILSYENAMNIFAEK"
misc_feature 295665..295838
/gene="sirR"
/locus_tag="SERP0293"
/note="Iron dependent repressor, N-terminal DNA binding
domain; Region: Fe_dep_repress; pfam01325"
/db_xref="CDD:110335"
misc_feature 295731..296015
/gene="sirR"
/locus_tag="SERP0293"
/note="Helix-turn-helix diphteria tox regulatory element;
Region: HTH_DTXR; smart00529"
/db_xref="CDD:197774"
misc_feature 295845..296054
/gene="sirR"
/locus_tag="SERP0293"
/note="Iron dependent repressor, metal binding and
dimerisation domain; Region: Fe_dep_repr_C; pfam02742"
/db_xref="CDD:202369"
misc_feature 296100..296300
/gene="sirR"
/locus_tag="SERP0293"
/note="FeoA domain; Region: FeoA; pfam04023"
/db_xref="CDD:217849"
gene complement(296468..297214)
/locus_tag="SERP0294"
/db_xref="GeneID:3242309"
CDS complement(296468..297214)
/locus_tag="SERP0294"
/note="identified by similarity to OMNI:NTL01SA0611"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187890.1"
/db_xref="GI:57866194"
/db_xref="GeneID:3242309"
/translation="MIYLQNFITTTIQLNIYLILVIGLLYVIIHYYRNKGVNAFLDIY
LNYIPVLTHEFGHVLFNKLAGGKAKDLVIVTSPRERKVTSQQGYAITQSKGYLGQFIT
TIGGYLMPPLMFLTGLVSIHYQYPSIFITIYLFIFIYYFFITSRKLSPLIVIILISSL
LYLVFKQDHQWFIYDIVTLSYHFILGVLLGEILQSSWTIFRLTFQRPKPSWDGSALTK
VTRVPTFIFSLVWILFNLYTVYLLIKYTIL"
misc_feature complement(296489..297088)
/locus_tag="SERP0294"
/note="Peptidase M50B-like; Region: Peptidase_M50B;
pfam13398"
/db_xref="CDD:222102"
gene 297389..298147
/gene="tagA"
/locus_tag="SERP0295"
/db_xref="GeneID:3242310"
CDS 297389..298147
/gene="tagA"
/locus_tag="SERP0295"
/note="identified by similarity to EGAD:19699; match to
protein family HMM PF03808; match to protein family HMM
TIGR00696"
/codon_start=1
/transl_table=11
/product="UDP-N-acetyl-D-mannosamine transferase"
/protein_id="YP_187891.1"
/db_xref="GI:57866195"
/db_xref="GeneID:3242310"
/translation="MYQNQRIKDKINILGVSFDNTTMLEMVENIKQFISSNTDDNLFI
VTANPEIVDYATEHELYRNLINQADYVVPDGTGIVKASKRLKQPLKRRVPGIELLEEC
LKIAHVSHQRVYLLGSKNEIVESAEKKLQSQYPNIHFAHHHGYIHLEDETVIKRITSF
NPDYIFVGMGFPKQEQWIQKHKDKFKHTVMMGVGGSFEVFSGSKKRAPQIFRKLNIEW
VYRVLIDWKRIGRMISIPKFMLKVAIQKYKMKSK"
misc_feature 297389..298141
/gene="tagA"
/locus_tag="SERP0295"
/note="Teichoic acid biosynthesis proteins [Cell envelope
biogenesis, outer membrane]; Region: WecG; COG1922"
/db_xref="CDD:224833"
misc_feature 297581..298081
/gene="tagA"
/locus_tag="SERP0295"
/note="The glycosyltransferase WecG/TagA superfamily
contains Escherichia coli WecG, Bacillus subtilis TagA and
related proteins. E. coli WecG is believed to be a
UDP-N-acetyl-D-mannosaminuronic acid transferase, and is
involved in enterobacterial common...; Region:
Glyco_transf_WecG_TagA; cd06533"
/db_xref="CDD:119439"
gene complement(298225..299019)
/locus_tag="SERP0296"
/db_xref="GeneID:3242311"
CDS complement(298225..299019)
/locus_tag="SERP0296"
/note="with TagG is involved in the export of teichoic
acids"
/codon_start=1
/transl_table=11
/product="teichoic acids export protein ATP-binding
subunit"
/protein_id="YP_187892.1"
/db_xref="GI:57866196"
/db_xref="GeneID:3242311"
/translation="MSVSVNIENLTKEYRIYRNNKDRIKDALIPKNKNKTFYALDNVS
LTAHEGDVIGLVGINGSGKSTLSNMIGGSISPSSGEITRHGDVSVIAINAGLNGQLTG
VENIEFKMLCMGFKRKEIKKLMPEIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITV
NPDILVIDEALSVGDQTFTQKCLDKIYEFKAAKKTIFFVSHNIRQVREFCTKIAWIEG
GKLKEFGELEEVLPDYEAFLKTFKKKSKAEQKEFRNKLDESRFVVK"
misc_feature complement(298228..299019)
/locus_tag="SERP0296"
/note="teichoic acids export protein ATP-binding subunit;
Provisional; Region: PRK13546"
/db_xref="CDD:184131"
misc_feature complement(298372..299007)
/locus_tag="SERP0296"
/note="ATP-binding cassette component of polysaccharide
transport system; Region: ABC_KpsT_Wzt; cd03220"
/db_xref="CDD:213187"
misc_feature complement(298828..298851)
/locus_tag="SERP0296"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213187"
misc_feature complement(order(298417..298419,298513..298518,
298624..298626,298825..298833,298837..298842))
/locus_tag="SERP0296"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213187"
misc_feature complement(298624..298635)
/locus_tag="SERP0296"
/note="Q-loop/lid; other site"
/db_xref="CDD:213187"
misc_feature complement(298561..298590)
/locus_tag="SERP0296"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213187"
misc_feature complement(298513..298530)
/locus_tag="SERP0296"
/note="Walker B; other site"
/db_xref="CDD:213187"
misc_feature complement(298495..298506)
/locus_tag="SERP0296"
/note="D-loop; other site"
/db_xref="CDD:213187"
misc_feature complement(298411..298431)
/locus_tag="SERP0296"
/note="H-loop/switch region; other site"
/db_xref="CDD:213187"
gene 299351..300163
/locus_tag="SERP0297"
/db_xref="GeneID:3242459"
CDS 299351..300163
/locus_tag="SERP0297"
/note="identified by similarity to EGAD:30975; match to
protein family HMM PF01061"
/codon_start=1
/transl_table=11
/product="tagG protein, teichoic acid ABC transporter
protein"
/protein_id="YP_187893.1"
/db_xref="GI:57866197"
/db_xref="GeneID:3242459"
/translation="MFAVGTVLKEHIKNFYLIQRLAQFQIKITNHNNYLGIAWEVLNP
ALQIMVYWLVFGLGIRSNAPIHGIPFVFWLLVGISMWFFINQGVLEGTKSISQKFNQV
AKMNFPLSIIPTYIVTSRFYGHLGLLAIIIIACMFNGIIPSIHIVQLLIYVPFAYLLT
SSVALLTSTLGILIRDTQMIMQALMRILFYMSPILWVPKNHGVSGLIHQIMLFNPVYF
IAESYRAAILFHQWYFIDHWKLMLYNVIIILLFFIVGSILHRRYRDHFADFL"
misc_feature 299351..300160
/locus_tag="SERP0297"
/note="ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagG; COG1682"
/db_xref="CDD:224596"
gene 300486..301577
/locus_tag="SERP0298"
/db_xref="GeneID:3242460"
CDS 300486..301577
/locus_tag="SERP0298"
/note="identified by match to protein family HMM PF04464"
/codon_start=1
/transl_table=11
/product="teichoic acid biosynthesis protein B"
/protein_id="YP_187894.1"
/db_xref="GI:57866198"
/db_xref="GeneID:3242460"
/translation="MRLIIKKIYIIAIVLLNMVFKPFNINSKHIVIMMTFKQDILPII
EALCSEGYHVTVIGKKIYQKDINNINHAYFIPAGNKYIMRHMKVLSKAKVIILDTYYL
MMGGYQKKKGQTVIQTWHAAGALKNFGLTDHQVDLKNKAMVRQYKKVYDATDYYLVGG
EKMAQCFIQSFDASPSQMLKFGLPRLTQYFRSNLKLEQQRLKKKYHITNKLAVYVPTY
REGQVAQRTIDKENFERHLPNYTLLSHLHPSTVDCQTSHSIDVTSLLIMADIIISDYS
SLPIEASALNKPTLIYNYDEQQYEKVRGLNEFYYAIPERYKMSNEESIIQAIQDNDEQ
FQSLFNDWHQYNSKDSLNQLVHFINKLVK"
misc_feature 300720..301529
/locus_tag="SERP0298"
/note="Putative glycosyl/glycerophosphate transferases
involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
[Cell envelope biogenesis, outer membrane]; Region: TagB;
COG1887"
/db_xref="CDD:224799"
gene 301577..302641
/locus_tag="SERP0299"
/db_xref="GeneID:3242461"
CDS 301577..302641
/locus_tag="SERP0299"
/note="identified by match to protein family HMM PF00535"
/codon_start=1
/transl_table=11
/product="teichoic acid biosynthesis protein X"
/protein_id="YP_187895.1"
/db_xref="GI:57866199"
/db_xref="GeneID:3242461"
/translation="MKLAIIIPVYNAEETIKRAILSVDTSVPYEIICINDGSTDQTQH
VLTELQQKHPHIKVIHQSNQGAARSRNVGLEAMSEDVDAFLFLDADDEFLPSRIDLMV
NAFNKNKETDVVIGQMARDVNGEWQVISTHQSMVKDAIVTLDRKPDILQSIGPGAKLF
SSKYAGLRFDEDVVFCEEHTFIVKAFSKARDIQLIPNIVYGYNEREGSVTAQRADTFL
PYMSDALKVRQRVMELLLLLDEKIYYSYRMDNLIVSYLIQAHLKKNNKITQSLLESVI
AYMKAMQHTHYSGEAMFRIVRAVEQSATHWTKPLYLQWKKALSEVGIGRPGLIRFKLQ
VIPKKISFSGKESLKRIFKK"
misc_feature 301589..>301927
/locus_tag="SERP0299"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cd00761"
/db_xref="CDD:132997"
misc_feature order(301598..301600,301604..301606,301676..301678,
301838..301840,301844..301846)
/locus_tag="SERP0299"
/note="active site"
/db_xref="CDD:132997"
gene 302776..303174
/gene="tagD"
/locus_tag="SERP0300"
/db_xref="GeneID:3242462"
CDS 302776..303174
/gene="tagD"
/locus_tag="SERP0300"
/EC_number="2.7.7.15"
/note="identified by similarity to EGAD:16695; match to
protein family HMM PF01467; match to protein family HMM
TIGR00125; match to protein family HMM TIGR01518"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate cytidylyltransferase"
/protein_id="YP_187896.1"
/db_xref="GI:57866200"
/db_xref="GeneID:3242462"
/translation="MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIK
NKKSYYDYEQRKMMLESIRYVDLVIPEEGWGQKEKDVDRFDVDVFVMGHDWEGEFDFL
KDKCEVIYLNRTEGISTTKIKQELYGKDTK"
misc_feature 302776..303162
/gene="tagD"
/locus_tag="SERP0300"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:241550"
misc_feature 302788..303147
/gene="tagD"
/locus_tag="SERP0300"
/note="Cytidylyltransferase; Region: CTP_transf_2;
pfam01467"
/db_xref="CDD:216517"
misc_feature order(302815..302826,303127..303138)
/gene="tagD"
/locus_tag="SERP0300"
/note="active site"
/db_xref="CDD:173912"
misc_feature order(302815..302817,302824..302826,303130..303132)
/gene="tagD"
/locus_tag="SERP0300"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature 302815..302826
/gene="tagD"
/locus_tag="SERP0300"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature 303127..303138
/gene="tagD"
/locus_tag="SERP0300"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene 303316..303426
/locus_tag="SERP0301"
/db_xref="GeneID:3243014"
CDS 303316..303426
/locus_tag="SERP0301"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187897.1"
/db_xref="GI:57866210"
/db_xref="GeneID:3243014"
/translation="MKPEIMVDVSGFIFKIKHSVIRDAYILFNKGEDINL"
gene 303515..303664
/locus_tag="SERP0302"
/db_xref="GeneID:3243015"
CDS 303515..303664
/locus_tag="SERP0302"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187898.1"
/db_xref="GI:57866211"
/db_xref="GeneID:3243015"
/translation="MDVNALYLVDATIQKFYGKDYVLRCGLTAIILRIEILLEYINRQ
FILYQ"
gene 304158..305885
/gene="abcA"
/locus_tag="SERP0303"
/db_xref="GeneID:3243016"
CDS 304158..305885
/gene="abcA"
/locus_tag="SERP0303"
/note="identified by match to protein family HMM PF00005;
match to protein family HMM PF00664"
/codon_start=1
/transl_table=11
/product="ABC transporter permease/ATP-binding protein"
/protein_id="YP_187899.1"
/db_xref="GI:57866212"
/db_xref="GeneID:3243016"
/translation="MKEQNPLFFLFKRLSWPYGLIIAAVIITSLGSLSGLLVPLFTGR
LVDKFSVSSINWGMIAIFGSIFLVNALLSGIGLYLLSKIGEKIIYAIRSLLWEHIIQL
KMPFFDKNESGQLMSRLTDDTKVINEFISQKLPNLLPSVLTLIGSLVMLFIMDWKLTL
LTFITIPVFILIIVPLGRVMQKISTNTQSEIANFSGLLGRVLTEMRLVKVSNTERLEL
DNAHTNLKKIYRLGLKQAKISAVVQPISGVVMLLTIAIILGFGALEIGTGAITPGTLI
AMIFYVIQLSMPLINLSTLVTDYKKAVGASSRIYEIMQEPIEPTEALSESKDVTIIDG
ELVFEHVDFKYDVKKILEDVSFSIPQGEVSAFVGPSGSGKSTIFNLIERMYDIERGDI
KYGNQSIFDIPLSKWRTKIGYVMQSNSMMSGTIRDNILYGINRKVDDEELIEYAKLAN
CHDFIMQFDEGYDTMVGERGLKLSGGQRQRIDIARSFVKNPDILLLDEATANLDSESE
LKIQEALETLMEGRTTVVIAHRLSTIKKAGQIVFIDKGEVTGKGTHHELMASHDKYRH
FVTSQKLSD"
misc_feature 304185..305876
/gene="abcA"
/locus_tag="SERP0303"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:224055"
misc_feature 304218..305024
/gene="abcA"
/locus_tag="SERP0303"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature 305166..305870
/gene="abcA"
/locus_tag="SERP0303"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 305259..305282
/gene="abcA"
/locus_tag="SERP0303"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(305268..305273,305277..305285,305403..305405,
305646..305651,305742..305744)
/gene="abcA"
/locus_tag="SERP0303"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 305394..305405
/gene="abcA"
/locus_tag="SERP0303"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 305574..305603
/gene="abcA"
/locus_tag="SERP0303"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 305634..305651
/gene="abcA"
/locus_tag="SERP0303"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 305658..305669
/gene="abcA"
/locus_tag="SERP0303"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 305730..305750
/gene="abcA"
/locus_tag="SERP0303"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 306171..307400
/locus_tag="SERP0304"
/db_xref="GeneID:3243017"
CDS 306171..307400
/locus_tag="SERP0304"
/note="identified by match to protein family HMM PF01773"
/codon_start=1
/transl_table=11
/product="nucleoside permease NupC"
/protein_id="YP_187900.1"
/db_xref="GI:57866213"
/db_xref="GeneID:3243017"
/translation="MFLLVNIIGLFIFLGIGVIFSRNRKNIQWKSIFILVILNLFLAW
FFIYFPWGRAGVKGAANGIAWVIESAHEGTGFAFKSFTSNKMMDMAVSALFPILLVVP
LFDILMYFNILPKIIGGIGWVLAKVTRQPKFESFFGVEMMFLGNTEALAVSSEQLKRM
NEMRVLTIAMMSMSSVSGAIVGAYVQMIPGELVLTAIPLNIINAIIVSCILNPVSVEE
QEDVVYSIKDHQTERQPFFSFLGDSVLAAGKLVLIIIAFVISFVALADLIDRLIHLIT
HLIANGIGVKGSFGLDQILGVFMYPFALLLGLPFNEAWEVAQQMAKKIVTNEFVVMGE
ISNQVNAMTPHHRAVISTFLVSFANFSTIGMIIGTLKGIVDKKTSDFVSKYVPMMLLA
GILVSLLTAAFVGLFAW"
misc_feature 306231..307397
/locus_tag="SERP0304"
/note="Nucleoside permease [Nucleotide transport and
metabolism]; Region: NupC; COG1972"
/db_xref="CDD:32155"
misc_feature 306231..306404
/locus_tag="SERP0304"
/note="Na+ dependent nucleoside transporter N-terminus;
Region: Nucleos_tra2_N; pfam01773"
/db_xref="CDD:201962"
misc_feature 306747..307391
/locus_tag="SERP0304"
/note="Na+ dependent nucleoside transporter C-terminus;
Region: Nucleos_tra2_C; pfam07662"
/db_xref="CDD:203714"
gene 307937..308770
/locus_tag="SERP0305"
/db_xref="GeneID:3243018"
CDS 307937..308770
/locus_tag="SERP0305"
/note="identified by similarity to OMNI:NTL01SPL1683;
match to protein family HMM PF02588"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187901.1"
/db_xref="GI:57866214"
/db_xref="GeneID:3243018"
/translation="MNKTIRDIILVMIGSFIFSAGINAFVISGNLGEGGVTGIAIVLY
YAFHISPGITNFVLNAILIIVGYKYLSKRSTYLTIFATVLISIFLGLTETWHVETGNV
VINAVFGGTCVGLGIGIIVLAGGTTAGTVILARIVNKYLDISTPYALLFFDLIVVLIS
LTEIPLVKCLVTVMSLYIGTKVMEFVIEGLNTKKAMTIISSRPNEVAKAIDQQVGRGL
TILNGHGYYTREEKDVLYVVISKTQVSRAKRIIKNIDENAFLVIHDVRDVYGNGFLLD
E"
misc_feature 307937..308767
/locus_tag="SERP0305"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1284"
/db_xref="CDD:224203"
misc_feature 307955..308203
/locus_tag="SERP0305"
/note="Uncharacterized BCR, YitT family COG1284; Region:
DUF161; pfam02588"
/db_xref="CDD:217125"
misc_feature 308582..308746
/locus_tag="SERP0305"
/note="Uncharacterized protein conserved in bacteria
(DUF2179); Region: DUF2179; pfam10035"
/db_xref="CDD:204383"
gene 309129..309926
/locus_tag="SERP0306"
/db_xref="GeneID:3243019"
CDS 309129..309926
/locus_tag="SERP0306"
/note="identified by similarity to EGAD:37683; match to
protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="iron ABC transporter ATP-binding protein"
/protein_id="YP_187902.1"
/db_xref="GI:57866215"
/db_xref="GeneID:3243019"
/translation="MSRLSGEQVKIGYGDSTIINNLDVAIPDGKVTSIIGPNGCGKST
LLKALSRLLSIKEGKINLDGKSIHATSTKEIAKKIAILPQSPEVPDGLTVGELVSYGR
FPHQKGFGRLTAEDKKEIDWALSVTGTSEFRHRTINDLSGGQRQRVWIAMALAQRTDI
IFLDEPTTYLDICHQLEILNLVKKLNEEEGCTIVMVLHDINQAIRFSDHLITMKAGDI
VATGQTDEVLTKDILEKVFNIDGVLDIDPRTGKPILVTYDLFCQTYS"
misc_feature 309132..309902
/locus_tag="SERP0306"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:224045"
misc_feature 309147..309794
/locus_tag="SERP0306"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature 309234..309257
/locus_tag="SERP0306"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature order(309243..309248,309252..309260,309378..309380,
309618..309623,309720..309722)
/locus_tag="SERP0306"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature 309369..309380
/locus_tag="SERP0306"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature 309546..309575
/locus_tag="SERP0306"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature 309606..309623
/locus_tag="SERP0306"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature 309630..309641
/locus_tag="SERP0306"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature 309708..309728
/locus_tag="SERP0306"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene 310246..310746
/locus_tag="SERP0307"
/db_xref="GeneID:3243020"
CDS 310246..310746
/locus_tag="SERP0307"
/note="identified by similarity to OMNI:SA0710"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187903.1"
/db_xref="GI:57866216"
/db_xref="GeneID:3243020"
/translation="MQHLIKKHVLNGEFELVRQLMSETDFMEFEEAYISSAHEVESMM
FYTCILDMIKVEESSELHDLAFLLLVYPLSEYEGALDSAYYHADSSIKLTDGNEVKSL
LQMLLLHAIPEPVISDKKAFDVAKRILKLDPSNNVARNVLKDTAKRMDNVVVDINELN
NQRDAR"
gene 310971..312038
/locus_tag="SERP0308"
/db_xref="GeneID:3243021"
CDS 310971..312038
/locus_tag="SERP0308"
/note="identified by similarity to OMNI:NTL01SA0630"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187904.1"
/db_xref="GI:57866217"
/db_xref="GeneID:3243021"
/translation="MGLNKEAIKIGFAYVGIVVGAGFSTGQEVMQFFTPFGLWSYIGV
IISGFILGFIGRQVAKIGTAFEAKNHESTLQYVFGKKFSKVFDYILVFFLFGIAVTMI
AGSGSTFEQSFGIPTWLGALIMTVLIYLTLLLDFNKIVRALGLVTPFLIIMVILIAVF
YLFTGSISLGEVNSAMPETSAWKGIFWGLVYGGLAFAVGFSTIVAIGGDASKRRVSGA
GAMFGGVLYAILLALINFSLQTEYSKIKDVAIPTLNLAKGIHPWLGLVLTVIMLAVMY
NTILGLCYSFAARFTEPYSKKYHIFIIIMMVMAFILSFVGFADLINVLYKFMGIVGLF
IVVAVLIKYYKRKKDDEEHIA"
misc_feature 310983..312032
/locus_tag="SERP0308"
/note="Uncharacterized membrane protein [Function
unknown]; Region: COG3949"
/db_xref="CDD:226458"
misc_feature 310998..>311795
/locus_tag="SERP0308"
/note="Solute carrier families 5 and 6-like; solute
binding domain; Region: SLC5-6-like_sbd; cl00456"
/db_xref="CDD:241874"
misc_feature order(311016..311018,311025..311027,311787..311789)
/locus_tag="SERP0308"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212031"
gene 312317..313366
/locus_tag="SERP0309"
/db_xref="GeneID:3240755"
CDS 312317..313366
/locus_tag="SERP0309"
/codon_start=1
/transl_table=11
/product="lipase/esterase"
/protein_id="YP_187905.1"
/db_xref="GI:57866218"
/db_xref="GeneID:3240755"
/translation="MKEKLKWIWITTLIILVVSLILAFNLKSHYNHVHDKQKSKTNVQ
INNKNVKLYRDISYGKGIPNSKLDIITPADMSNDTKLPVIFWMHGGGFIAGDKQYKNQ
LLSKVAEQGYIIVNVNYALAPQYKYPTPLVQLNQAVKFIKENKHELPIDFDQVVIGGD
SAGAQLTSQYVAMQTNEDLRDEMHFEQQFKPSQIKAAVFFGGFYNMKTVKATEFPRIQ
LFMKSYTGTSHWETDFKNLSQMSTLNQVTHEYPPTFLSVGDADPFYSQNKEFAQGLKT
ENIPVDTLFYDGSHHLHHQYQFHLDKPESKENIKKVLLFLSRNTSSSGVESNESSQNQ
PTQNTNEVSLYPFDS"
misc_feature 312515..>312853
/locus_tag="SERP0309"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cd00312"
/db_xref="CDD:238191"
misc_feature 312566..313189
/locus_tag="SERP0309"
/note="alpha/beta hydrolase fold; Region: Abhydrolase_3;
pfam07859"
/db_xref="CDD:219611"
misc_feature order(312581..312589,312794..312802,312809..312811)
/locus_tag="SERP0309"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238191"
gene complement(313927..314433)
/locus_tag="SERP0310"
/db_xref="GeneID:3241790"
CDS complement(313927..314433)
/locus_tag="SERP0310"
/note="identified by match to protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_187906.1"
/db_xref="GI:57866219"
/db_xref="GeneID:3241790"
/translation="MTHLIREISIKDVENFISLLSQIYDESEFTFYNPGEYSPTISSA
SQHLEKYITSPTKAIYVAESDEQLVGYVFVNTETYERTQHEAVVYLGVREYYQHQGIG
QALINRIEAWALNHHIRRIEATVVTENINAIELFKGMGFQIEGELKDKLFINQKYYNE
YVMAKILN"
misc_feature complement(313954..314421)
/locus_tag="SERP0310"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_4; pfam13420"
/db_xref="CDD:222116"
misc_feature complement(314062..314259)
/locus_tag="SERP0310"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(314125..314130,314158..314166))
/locus_tag="SERP0310"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 314542..315465
/locus_tag="SERP0311"
/db_xref="GeneID:3241791"
CDS 314542..315465
/locus_tag="SERP0311"
/note="identified by similarity to OMNI:SA0715"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187907.1"
/db_xref="GI:57866220"
/db_xref="GeneID:3241791"
/translation="MKPKVLLAGGTGYIGRYLSRVIEHDAQLFALSKYPKPDKGSTNK
ITWLKRDIYNHKDVVEAMKGIDIAVYYLDPTKHSAKLTHATARDLNFIAADNFGRAAS
INKLKKIVYIPGSRHDNEAIERLGAYGVPVDCTDVEVKRPHINVELQTAKYDDVRTAM
KMILPKKWTLNQLVDYFSRWLDETKGTFVHTQKQDHHYIIYNRNIKRPLAIFKMVNTT
EDIITLHLVDGKLMKPKSKKQAKLEFRLLKGTRLIMVHLYDYIPRLFWPIYYFIQAPI
QGLLMRGFEIDCRIKHYQGRIQSGEKIKYTK"
misc_feature 314551..>314877
/locus_tag="SERP0311"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:223528"
misc_feature 314554..>314937
/locus_tag="SERP0311"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature order(314566..314568,314572..314577,314581..314583,
314635..314643,314755..314757,314767..314772,
314875..314883,314887..314889)
/locus_tag="SERP0311"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(314809..314811,314881..314883,314887..314889)
/locus_tag="SERP0311"
/note="active site"
/db_xref="CDD:187535"
gene 315484..316158
/locus_tag="SERP0312"
/db_xref="GeneID:3241792"
CDS 315484..316158
/locus_tag="SERP0312"
/note="identified by match to protein family HMM PF00072;
match to protein family HMM PF00486"
/codon_start=1
/transl_table=11
/product="DNA-binding response regulator"
/protein_id="YP_187908.1"
/db_xref="GI:57866221"
/db_xref="GeneID:3241792"
/translation="MQILLVEDDNTLFQELKKELEQWDFNVVGVEDFSHVMETFETFN
PEIVILDVQLPKYDGFYWCRKMRQQSNVPILFLSSRDNPMDQVMSMELGADDYMQKPF
YTNVLIAKLQAIYRRVYEFGVEEKRTLSWQDATVDLSKDSIQKDDKTIFLSKTEMIIL
EMLINKRNQIVTRDTLITALWDDEAFVSDNTLTVNVNRLRKKLSEIDMDSAIETKVGK
GYLAHE"
misc_feature 315484..316146
/locus_tag="SERP0312"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature 315493..315825
/locus_tag="SERP0312"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(315502..315507,315634..315636,315658..315660,
315715..315717,315772..315774,315781..315786)
/locus_tag="SERP0312"
/note="active site"
/db_xref="CDD:238088"
misc_feature 315634..315636
/locus_tag="SERP0312"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(315643..315648,315652..315660)
/locus_tag="SERP0312"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 315781..315789
/locus_tag="SERP0312"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 315868..316143
/locus_tag="SERP0312"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(315940..315942,315997..316002,316054..316056,
316063..316065,316087..316092,316123..316125,
316138..316140)
/locus_tag="SERP0312"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene 316151..317191
/locus_tag="SERP0313"
/db_xref="GeneID:3241793"
CDS 316151..317191
/locus_tag="SERP0313"
/note="identified by match to protein family HMM PF00512;
match to protein family HMM PF02518"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="YP_187909.1"
/db_xref="GI:57866222"
/db_xref="GeneID:3241793"
/translation="MNNFRWFWFFIKSRINWILWILFLNIILLGVAYIDYEISVESVF
YIVILNVGLSILFLLFTFVKEVRLSKHFYEDKEIEEIKHKDLAETPFQQQVIDYLYRH
IAAQKEKVVEQQLQIKNHEQTITEFVHDIKTPVTAMKLLIDQENDDQRKRALLFEWSR
INEMLDKQLYLTRLETHHRDMYFDYISLKRMVIDEIQVTRHISQAKGIGFELDFKDEQ
KVYTDVKWCRMMIRQVLSNSLKYSDNSTINLSGYNIEGHVVLKIKDYGRGISKRDLPR
IFDRGFTSTTDRNDTASSGMGLYLVQSVKEQLGIEVKVDSIVGKGTTFYFIFPQQNEI
IERMSKVTRLSF"
misc_feature <316412..317149
/locus_tag="SERP0313"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature 316535..316678
/locus_tag="SERP0313"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cl00080"
/db_xref="CDD:241595"
misc_feature 316838..317134
/locus_tag="SERP0313"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(316847..316849,316859..316861,316868..316870,
316934..316936,316940..316942,316946..316948,
316952..316957,317033..317044,317090..317092,
317096..317098,317111..317116,317120..317122)
/locus_tag="SERP0313"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 316859..316861
/locus_tag="SERP0313"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(316946..316948,316952..316954,317033..317035,
317039..317041)
/locus_tag="SERP0313"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 317337..318098
/locus_tag="SERP0314"
/db_xref="GeneID:3241794"
CDS 317337..318098
/locus_tag="SERP0314"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187910.1"
/db_xref="GI:57866223"
/db_xref="GeneID:3241794"
/translation="MSILEVRQLSKVYGDKQAFQEVLKEINLDVDEGEFISIMGPSGS
GKTTLLNVLSSIDYMTKGSITINGKQLEKLSNKQLSDIRKKDIGFIFQDYNILNTLTV
KENIMLPLSVQKLDKQIMHERYQRIVEALNISDISDKYPSELSGGQRQRTSAARAFIN
LPSIIFADEPTGALDSKSTLDLLKRLKYMNEEFNTTILMVTHDPVAASFSNRVVMLKD
GQIFTELYQGDDDKQTFYKEIIRTQSVLGGINYEL"
misc_feature 317343..318008
/locus_tag="SERP0314"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:224059"
misc_feature 317346..317999
/locus_tag="SERP0314"
/note="ATP-binding cassette domain of the transporters
involved in export of lipoprotein and macrolide, and cell
division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
/db_xref="CDD:213222"
misc_feature 317454..317477
/locus_tag="SERP0314"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213222"
misc_feature order(317463..317468,317472..317480,317610..317612,
317838..317843,317940..317942)
/locus_tag="SERP0314"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213222"
misc_feature 317601..317612
/locus_tag="SERP0314"
/note="Q-loop/lid; other site"
/db_xref="CDD:213222"
misc_feature 317766..317795
/locus_tag="SERP0314"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213222"
misc_feature 317826..317843
/locus_tag="SERP0314"
/note="Walker B; other site"
/db_xref="CDD:213222"
misc_feature 317850..317861
/locus_tag="SERP0314"
/note="D-loop; other site"
/db_xref="CDD:213222"
misc_feature 317928..317948
/locus_tag="SERP0314"
/note="H-loop/switch region; other site"
/db_xref="CDD:213222"
gene 318088..319977
/locus_tag="SERP0315"
/db_xref="GeneID:3241795"
CDS 318088..319977
/locus_tag="SERP0315"
/note="identified by match to protein family HMM PF02687"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_187911.1"
/db_xref="GI:57866224"
/db_xref="GeneID:3241795"
/translation="MSFNEIIFKNFKQNVTHYAIYLLSLVISVVLYFSFVTLKYAHHL
HGNQSFPAIKEGSQVGSYFLFIIIVVFLLYANFLFLKRRGRELSLLQIIGLTKKDIMK
MIMLEQLMTFMMTTIVGIILGIFGSKILLMIVLRLLGINVSVSIIFNYHAILETLLLI
AVSYVLIVFQSYVYLLKRSIKELASDVNKKEFSHTRTTLGEVVLGLLGIIMIVSGYIM
STKLVDNVETIIQPFAILFLTVIGSYFFFRSTVSLIFKAIQRLRNGTVSVTDVMFTSP
IIYRVKKNAFSLTVMTVVSAITVSVLCFAALSRSTLTNEVLLSSPHDVTLKNQKQANE
LAFKLNNRNIEHYYNYKEVVYAKVYKDHLFSEGVYRPKEITVTSDKYIPNVSTKKGQT
DIIIPRGSLKDVVKTDKKRTAYVGSKKFRLKVSLRKGINKVYFMSDVDRGRPTLILND
EDYQKIREHIKEKNIVSQYGFDLKNKNDLPELEKLVSSINEDIETRSEAASEISSLTG
ILLFVTSFLGITFLIAAGCIIYIKQIDETEDELENYTILRKLGFTHQDMSKGLKLKVI
FNFGLPLIIALLHAYFASLAYMHLMNVTNQIPIFIVMAVYTATYAVFAIIAYNHSKRT
IKHSI"
misc_feature 318262..318627
/locus_tag="SERP0315"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:217187"
gene 320499..321116
/locus_tag="SERP0316"
/db_xref="GeneID:3241796"
CDS 320499..321116
/locus_tag="SERP0316"
/note="identified by similarity to OMNI:SA0721; match to
protein family HMM PF01865"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187912.1"
/db_xref="GI:57866225"
/db_xref="GeneID:3241796"
/translation="MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDN
IKTYESHGDELMHQVISDLNQTFITPIEREDILSLCNAIDDVLDAMEETSAMFEMYSI
EYTDEYMAEFVENIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSM
KHIFNSETDPITLIKIKDIYQSMEEIADKCQAVANNFETIIMKNS"
misc_feature 320499..321110
/locus_tag="SERP0316"
/note="Phosphate transport regulator (distant homolog of
PhoU) [Inorganic ion transport and metabolism]; Region:
COG1392"
/db_xref="CDD:224310"
gene 321131..322141
/locus_tag="SERP0317"
/db_xref="GeneID:3241288"
CDS 321131..322141
/locus_tag="SERP0317"
/note="identified by match to protein family HMM PF01384"
/codon_start=1
/transl_table=11
/product="phosphate transporter family protein"
/protein_id="YP_187913.1"
/db_xref="GI:57866233"
/db_xref="GeneID:3241288"
/translation="MSYILIVTIAIVIFSLIFDFINGFHDTANAVATAVSTRALTPRR
AILLAAVMNFIGALTFTGVAGTITKDIVDPFKLQHGLVVVLAAIIAAIIWNLITWLYG
IPSSSSHALIGSIAGAAIASQGSFAVLHYQGFTKIIIVLIISPIIAFCVGYMMYTIVK
IVFKNSNLTRTNRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVGNLQDGSNVE
PQVWVKVACATAMGLGTAVGGWKIIKTVGGNIMKIRPANGAAADISSALTIFVASSLH
FPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMVVTWVITLPISAVLAAIIYFIIHLF
LK"
misc_feature 321140..322135
/locus_tag="SERP0317"
/note="Phosphate/sulphate permeases [Inorganic ion
transport and metabolism]; Region: PitA; COG0306"
/db_xref="CDD:223383"
gene complement(322334..323134)
/locus_tag="SERP0318"
/db_xref="GeneID:3241289"
CDS complement(322334..323134)
/locus_tag="SERP0318"
/note="identified by match to protein family HMM PF01476;
match to protein family HMM PF05257"
/codon_start=1
/transl_table=11
/product="LysM domain-containing protein"
/protein_id="YP_187914.1"
/db_xref="GI:57866234"
/db_xref="GeneID:3241289"
/translation="MKKLAFAITAASGAAAVLSHHDAEASTQHKVQSGESLWTIAQQY
NTSVESIKQNNNLSNNMVFPGQVINVGGSASQNTSSNTSSSSASSHTVVAGESLNIIA
NKYGVSVDALMQANHLNGYLIMPNQILTIPNGGSGSGSGGTATQTSGNYTSPSFNHQN
LYTEGQCTWYVFDKRSQAGKPISTYWSDAKYWASNAANDGYQVDNTPSVGAIMQSTPG
PYGHVAYVERINGDGSILISEMNYANGPYNMNYRTIPASEVSSYAFIH"
misc_feature complement(322925..323056)
/locus_tag="SERP0318"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(322736..323017)
/locus_tag="SERP0318"
/note="FOG: LysM repeat [Cell envelope biogenesis, outer
membrane]; Region: LytE; COG1388"
/db_xref="CDD:224306"
misc_feature complement(322742..322867)
/locus_tag="SERP0318"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(322337..>322684)
/locus_tag="SERP0318"
/note="Surface antigen [General function prediction only];
Region: COG3942"
/db_xref="CDD:226451"
misc_feature complement(322340..322672)
/locus_tag="SERP0318"
/note="CHAP domain; Region: CHAP; pfam05257"
/db_xref="CDD:218523"
gene 323545..324204
/locus_tag="SERP0319"
/db_xref="GeneID:3241290"
CDS 323545..324204
/locus_tag="SERP0319"
/note="identified by similarity to OMNI:SA0724"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187915.1"
/db_xref="GI:57866235"
/db_xref="GeneID:3241290"
/translation="MSQSTHQSTDHKRQSQDKNQTHAYAKVWLYFMYYWMIFGIGCYF
GQYLPMSWRKPLSLGLLILILATLFIKRARKYGLVISHIYAIIVGLLSYALFTTYLQN
LGAEVFYKNIILAIGAFIAFGIIGYFLIKDASSMGKYLFVTLIALIIAGIIGIFINNP
IFHTVITIVSLLLFLLYTLYDFNRMKRGQFSPREMGFNLFINLLNIIEDILSLANRFK
N"
misc_feature 323614..324201
/locus_tag="SERP0319"
/note="Integral membrane protein, interacts with FtsH
[General function prediction only]; Region: COG0670"
/db_xref="CDD:223742"
gene 324467..326641
/locus_tag="SERP0320"
/db_xref="GeneID:3241291"
CDS 324467..326641
/locus_tag="SERP0320"
/note="identified by match to protein family HMM PF00165"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_187916.1"
/db_xref="GI:57866236"
/db_xref="GeneID:3241291"
/translation="MANSCLHILSKKEYTATRCQDGILLFWPIEGSMHFQQFMKERIL
SDELYIVNNMDVFSISDNGITLEVYISSDWFTELGYSFFNYHYISDLIQSKKEIKELV
AQLTLNFLDNDVDKEQDIINKIVHILANEAIIDKKIAEDQYMYDYYGELKDELNYIYN
HIEERLTLKDISNKLYVSKSNLSTQFHLLLGMGFKKYIDTLKISKSIEMLLTTTKTIS
QISETLGFSNVSTYSRQFKNYLSVTPNAYRAMKKYDKYNGCSDDDVSEHLKSCVQSLI
CSKMPTNELDNYDEIVIDQYPISNVSTFYSVVQINSIDEIKMLFLQGIHKKIGYEGSN
IIFCIMPNLCQYKNLFSQEEMNDIIKIIIEYRLHVAFSIDKIEQIYELNQLFTYQYEN
LKIMNKCSVSDYNVQFIFNLNEKSIREIYRNILKIQNIELEYKIGLDISCMFNDTAQF
KSLASQIKRLKFDYLYIDNARLKSPYLLDNEEGLLLKNILQFKHLIDDLKQFDFSSEN
LIFLNLYNHQLLNNNEIDLSNSAPLLFKTISKLKKHFKGYGLNVFSNPKVFNAVHLFD
ENGFKTTFGLIFNHLSWMTNQNQIEQRFYNIIENADQYYLYLYDWRVIESESNESDFK
DVDIWINFEDEALIDEYICVIAKVDDEGGNINHMISQNLRHKYVWSTPFLMRVEENFR
PYMHIMEHDFKKGPLKIRMKYNAVYLVEIYKKDKINKRRSTT"
misc_feature 324959..325210
/locus_tag="SERP0320"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 325085..325210
/locus_tag="SERP0320"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
gene 326756..327115
/gene="sarX"
/locus_tag="SERP0321"
/db_xref="GeneID:3241292"
CDS 326756..327115
/gene="sarX"
/locus_tag="SERP0321"
/note="identified by match to protein family HMM
TIGR01889"
/codon_start=1
/transl_table=11
/product="accessory regulator A-like protein"
/protein_id="YP_187917.1"
/db_xref="GI:57866237"
/db_xref="GeneID:3241292"
/translation="MNEQKLIKLLEFYKQYKALSGYIDKKYKLTLNDLAVLYLAKKYC
LDERILMQTFLKLATGELDISRTKILMSIRRLIDKEKLNKVRSNRDERKIFLYMDENN
MSEFDALFEDVEKFLSY"
misc_feature 326774..327106
/gene="sarX"
/locus_tag="SERP0321"
/note="staphylococcal accessory regulator family; Region:
Staph_reg_Sar; TIGR01889"
/db_xref="CDD:130944"
gene 327368..328084
/locus_tag="SERP0322"
/db_xref="GeneID:3241293"
CDS 327368..328084
/locus_tag="SERP0322"
/note="identified by similarity to OMNI:SA0727; match to
protein family HMM PF01709; match to protein family HMM
TIGR01033"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187918.1"
/db_xref="GI:57866238"
/db_xref="GeneID:3241293"
/translation="MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESN
QTLRLVLERAKTYSVPNHIIDRAIDKAKGAGDENYDHLRYEGFGPNGSMLIVDALTNN
VNRTASDVRAAFGKNGGNMGVSGSVAYMFDHTATFGVEGKSVDEVLETLMEQDIDVRD
VIDDNGLTIVYAEPDQFAQVQDALREAGVEEFKVAEFEMLPQTDIELSEEDQAIFEKL
IDALEDLEDVQNVFHNVDLK"
misc_feature 327368..328075
/locus_tag="SERP0322"
/note="hypothetical protein; Provisional; Region:
PRK12378"
/db_xref="CDD:237084"
gene 328084..328560
/locus_tag="SERP0323"
/db_xref="GeneID:3241294"
CDS 328084..328560
/locus_tag="SERP0323"
/note="identified by similarity to GP:13122144"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187919.1"
/db_xref="GI:57866239"
/db_xref="GeneID:3241294"
/translation="MMTANDWIDRLELISHPEGGYFKETMRGDGKGRASFSSIYFLLT
QRDISHFHRIDADEVWYYHAGQTLKIHMITPKGEYHTVKLGRDIDCGECLQYCVPKGT
IFASTLDSAEGYSLVGCMCQPGFEYEHFELLTQEYLIRQYPQYESIIKRLAISQED"
misc_feature 328093..328482
/locus_tag="SERP0323"
/note="Cupin superfamily (DUF985); Region: Cupin_5;
pfam06172"
/db_xref="CDD:218924"
gene complement(328812..329486)
/gene="scdA"
/locus_tag="SERP0324"
/db_xref="GeneID:3241295"
CDS complement(328812..329486)
/gene="scdA"
/locus_tag="SERP0324"
/note="involved in peptidoglycan cross-linking"
/codon_start=1
/transl_table=11
/product="cell wall biosynthesis protein ScdA"
/protein_id="YP_187920.1"
/db_xref="GI:57866240"
/db_xref="GeneID:3241295"
/translation="MITKEDIVADVVTDYPKSADIFRNAGIDFCCGGQESIASAVNHK
PNIDLNSLLNKLNHIDNTEGNSTINPKFLNVESLIQYIQSAYHETLKEEFKNLTPYMT
KLAKVHGPSHPYLLKLQDLYREFRDSMLDHIRKEDEEDFPKLIQYSQGQDVQNIKIIL
EDLINDHEDTGQLLNVMNQLTSDYQTPEEACGTWKLVYQRLQNIERQTHQHVHLENHV
LFKKVS"
misc_feature complement(328815..329486)
/gene="scdA"
/locus_tag="SERP0324"
/note="cell wall biosynthesis protein ScdA; Provisional;
Region: PRK13276"
/db_xref="CDD:183940"
misc_feature complement(329310..329477)
/gene="scdA"
/locus_tag="SERP0324"
/note="Domain of Unknown function (DUF542); Region:
ScdA_N; pfam04405"
/db_xref="CDD:190972"
misc_feature complement(328827..329228)
/gene="scdA"
/locus_tag="SERP0324"
/note="Hemerythrin-like domain; Region: Hr-like; cd12108"
/db_xref="CDD:213983"
misc_feature complement(order(328842..328844,328854..328856,
328986..328988,329079..329081,329088..329093,
329226..329228))
/gene="scdA"
/locus_tag="SERP0324"
/note="Fe binding site [ion binding]; other site"
/db_xref="CDD:213983"
gene 329658..330803
/locus_tag="SERP0325"
/db_xref="GeneID:3241314"
CDS 329658..330803
/locus_tag="SERP0325"
/note="identified by match to protein family HMM PF00042;
match to protein family HMM PF00970"
/codon_start=1
/transl_table=11
/product="flavohemoprotein"
/protein_id="YP_187921.1"
/db_xref="GI:57866249"
/db_xref="GeneID:3241314"
/translation="MLTEKEQDIIKQTVPLLQDKGTEITSIFYPKMFEANPELLNMFN
QTNQKKGMQSAALAQAVLAAAMNINNLGAIKPAIMPVAHKHCALQVYPEHYPIVGENL
LAAIQDVTGLESDDPVIQTWAKAYGEIADVFIKLEQEIYNHMLWKGFKPFKITNITQE
TSDIKSFTVESEEYDLSQFEPGQYITVDVSSEKLPYRAKRHYSIIDGDENHLVFGVKR
DVTTEHEGEVSTILHDEISEGDMINLSAPVGGFSIENTERPQLFIGSGVGMTPLVSMF
KKAASLNVPTQMIQAVVTEDERPFAQKLDSITDNYEQAQLHLHVKDKEGYLEAKELEQ
YLSEQPEIYICGGTKFLHSIINSLKELNYDMNHVHFETFIPRLSVQV"
misc_feature 329658..330797
/locus_tag="SERP0325"
/note="bifunctional nitric oxide
dioxygenase/dihydropteridine reductase 2; Provisional;
Region: PRK13289"
/db_xref="CDD:237337"
misc_feature 329664..330056
/locus_tag="SERP0325"
/note="Globins are heme proteins, which bind and transport
oxygen. This family summarizes a diverse set of homologous
protein domains, including: (1) tetrameric vertebrate
hemoglobins, which are the major protein component of
erythrocytes and transport oxygen...; Region: globin;
cd01040"
/db_xref="CDD:238510"
misc_feature order(329742..329744,329772..329774,329781..329786,
329814..329816,329823..329825,329907..329912,
329940..329942,329949..329951,330042..330044)
/locus_tag="SERP0325"
/note="heme-binding site [chemical binding]; other site"
/db_xref="CDD:238510"
misc_feature 330093..330788
/locus_tag="SERP0325"
/note="FAD_NAD(P)H binding domain of flavohemoglobin.
Flavohemoglobins have a globin domain containing a B-type
heme fused with a ferredoxin reductase-like
FAD/NAD-binding domain. Flavohemoglobins detoxify nitric
oxide (NO) via an NO dioxygenase reaction. The...; Region:
flavohem_like_fad_nad_binding; cd06184"
/db_xref="CDD:99781"
misc_feature order(330207..330209,330255..330266,330300..330302,
330306..330308,330333..330344,330465..330467,
330774..330776)
/locus_tag="SERP0325"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99781"
misc_feature order(330255..330257,330261..330266)
/locus_tag="SERP0325"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99781"
misc_feature order(330333..330335,330342..330344,330351..330353,
330372..330374,330396..330398,330402..330404)
/locus_tag="SERP0325"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99781"
misc_feature order(330441..330443,330453..330464,330468..330470)
/locus_tag="SERP0325"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99781"
misc_feature order(330456..330461,330528..330536,330693..330698)
/locus_tag="SERP0325"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99781"
misc_feature 330783..330785
/locus_tag="SERP0325"
/note="Heme binding pocket [chemical binding]; other
site"
/db_xref="CDD:99781"
gene 330790..331008
/locus_tag="SERP0326"
/db_xref="GeneID:3241315"
CDS 330790..331008
/locus_tag="SERP0326"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187922.1"
/db_xref="GI:57866250"
/db_xref="GeneID:3241315"
/translation="MFKYSFKEGNIMKMNPRYVKVFFLYLVSTFISNRLTTNKSLCKT
LMQGILGYGLFALGLKYLTIKKKQHQAQ"
gene 331297..331890
/locus_tag="SERP0327"
/db_xref="GeneID:3241316"
CDS 331297..331890
/locus_tag="SERP0327"
/note="identified by similarity to OMNI:NTL01SA0647; match
to protein family HMM PF04167"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187923.1"
/db_xref="GI:57866251"
/db_xref="GeneID:3241316"
/translation="MKVKYIDKRHWRRLVEREYTEVKVNNNRFKGIIGLVTMKKVREP
LEVTVVGQNIIVADDNYKWLQILPDKKRYSMTVMFDNKGNPLEYYFDINIKNITQKGN
ARTIDLCLDVLVLPNGEYELVDEDDLMYALQNKQISKKQYHEAYIIAHQLMIEIEDNF
SEIQDKVMRCYHKINHKAQKMKHKRPYKAKKKSHRRH"
misc_feature 331297..331836
/locus_tag="SERP0327"
/note="Predicted RNA-binding protein, associated with
RNAses E/G family [General function prediction only];
Region: COG2306"
/db_xref="CDD:225188"
gene 331971..332825
/locus_tag="SERP0328"
/db_xref="GeneID:3241317"
CDS 331971..332825
/locus_tag="SERP0328"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_187924.1"
/db_xref="GI:57866252"
/db_xref="GeneID:3241317"
/translation="MKIDDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIEAAFG
VEIFIRTKKQLITTTEGSMIIEHARDMLKRERLFFDKIQAHIGEVNGTISIGCSSLIG
QTLLPEVLSLYNSQFPNVEIQVQVGSTEQIKAHHRDYHVMITRGNKVMNLSNTHLFND
EHYFIYPKDRKEDVTKLPFIEFQADPIYINQIKQWYNDHLGHDYHATITVDQVATCKE
MLLSGVGVTILPKIMMKNIDKNMFEFEKVTIDKKPLIRSTYMSYDASMLQLPQVDAFV
NLMLNFIR"
misc_feature 331971..332822
/locus_tag="SERP0328"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 331977..332153
/locus_tag="SERP0328"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 332244..332807
/locus_tag="SERP0328"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature order(332289..332294,332298..332303,332310..332312,
332322..332324,332328..332348,332589..332606,
332622..332627,332631..332636)
/locus_tag="SERP0328"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 332883..334091
/locus_tag="SERP0329"
/db_xref="GeneID:3241318"
CDS 332883..334091
/locus_tag="SERP0329"
/note="identified by similarity to EGAD:6822; similarity
to EGAD:7093; similarity to EGAD:19549"
/codon_start=1
/transl_table=11
/product="sugar efflux transporter"
/protein_id="YP_187925.1"
/db_xref="GI:57866253"
/db_xref="GeneID:3241318"
/translation="MFTALLQIKNYKLFVVNMLLLGMGIAVTVPYLILFATKDLGMTT
TQYGLLLALAAISQFIVNSIIARFSDTHHLNRKILIITALFMGAVSFSIYFYVHQIWL
FIVLYALFQGLFAPAMPQLYASARESINASSSRDRAKFANTVLRSMFSLGFLFGPFIG
AQLIELKGYSGLFGGTIAIILFTLILQVFFYKNLPVKNQISEQQHIEKIAPNMFKDKS
LFIPFIAFILLHIGQWMYTMNMPLFVTDYLNEKERYVGYLASLCAGLEVPFMVILGIL
SAKLPTRTLLIIGSVFGGAFYFSIGVFKNFHMMLVGQICLAIFLAILLGLGISYFQDI
LPDFPGYASTLFANAMVIGQLGGNLLGGVMSHWVGLENVFFVSASSIFVGMILILFTK
DQKITIEDVE"
misc_feature 332919..334052
/locus_tag="SERP0329"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 332922..334061
/locus_tag="SERP0329"
/note="sugar efflux transporter; Region: 2A0120;
TIGR00899"
/db_xref="CDD:129977"
misc_feature order(332955..332957,332964..332972,332976..332981,
333033..333035,333042..333047,333054..333056,
333066..333071,333075..333080,333225..333230,
333237..333242,333249..333254,333270..333272,
333306..333311,333318..333323,333339..333341,
333570..333572,333579..333584,333591..333596,
333603..333605,333645..333647,333657..333659,
333669..333671,333678..333680,333690..333692,
333831..333833,333840..333845,333852..333854,
333864..333869,333876..333878,333906..333911,
333918..333923,333930..333935,333942..333944)
/locus_tag="SERP0329"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 334098..334586
/locus_tag="SERP0330"
/db_xref="GeneID:3241147"
CDS 334098..334586
/locus_tag="SERP0330"
/note="identified by similarity to OMNI:SA0734; match to
protein family HMM PF04306"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187926.1"
/db_xref="GI:57866254"
/db_xref="GeneID:3241147"
/translation="MTAILWILIIIAFALAFIGLIKPVIPSLLMLWIGFLIYQFGFHE
GRLSWIFYVAMIIFTIMILVADFVMNKYFVNRFGGSKIGEYTALIGVIVGCFVFPPFG
IIIIPFVAVFIVELVQGFNFQQAIKVSFGSVIAFLASTIAQGLIMIVMVIWFFLDVFL
IN"
misc_feature 334164..334574
/locus_tag="SERP0330"
/note="Protein of unknown function (DUF456); Region:
DUF456; pfam04306"
/db_xref="CDD:218018"
gene complement(334642..335331)
/locus_tag="SERP0331"
/db_xref="GeneID:3241148"
CDS complement(334642..335331)
/locus_tag="SERP0331"
/note="identified by similarity to OMNI:SA0735"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187927.1"
/db_xref="GI:57866255"
/db_xref="GeneID:3241148"
/translation="MKSTAQLTKENNVKALRLNNTDREIFENYMTYVRADLRVNPHDS
ELMLNRTLKHLIRAGDTGMLAMEFFNHDPKAHAKKEIRELPNETFKNIFKYISHNFIL
LIGIFCFLKGLIGFFIGGDSNLLYLYTFPLTVIIGLVIIFLFIWMNFKTVQLQCFNNS
YWTWWLTYGVIALLLITLFYVFFIPQSFLAFGPYIKVSNWTFIIIAIIIIPISFYVNH
HFYNKEANTRI"
gene 335770..336192
/locus_tag="SERP0332"
/db_xref="GeneID:3241149"
CDS 335770..336192
/locus_tag="SERP0332"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_187928.1"
/db_xref="GI:57866256"
/db_xref="GeneID:3241149"
/translation="MRKWLTLLLITTLVLTACGKSNEKASLEKSIDQLKKENKDLKKQ
KKKLQEQKDKLKHKQDSLQEDVNDLPAKSTSRDKKNKDNHDAKEKSSDNQSTSANHDD
QTNKIKSNQDEHDSQSSKPHTQQKPSQNDRKNNHRQER"
gene 336324..336620
/locus_tag="SERP0333"
/db_xref="GeneID:3241150"
CDS 336324..336620
/locus_tag="SERP0333"
/note="identified by similarity to OMNI:SA0738"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187929.1"
/db_xref="GI:57866257"
/db_xref="GeneID:3241150"
/translation="MHEQDFNILEGKKMTLVELGRELENLTGRTIKDTTSDIKRVIAH
LPNFESDTDTFVATYHLNHQNDFIDATFVAPKNQSDRLKEIPVHIKLISYISKN"
gene 336746..337294
/locus_tag="SERP0334"
/db_xref="GeneID:3240654"
CDS 336746..337294
/locus_tag="SERP0334"
/note="identified by match to protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_187930.1"
/db_xref="GI:57866266"
/db_xref="GeneID:3240654"
/translation="MVIYIETERLNLRDWETKDLLPFQKMNANAQVRRYFPSLLSYRR
SEIDMENMDSIIQESGLGLFAVELKETGEWLGFIGVNYVSKDSHYPFKELPFYEIGWR
LIPEVWGNGLATEGAEAVMKYARDKGIKELYSFTSENNLPSRKVMEKLGMTFLDNFEY
PNLSKYHPLKRHVRYYKELLPS"
misc_feature 336770..337204
/locus_tag="SERP0334"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:222034"
misc_feature 336947..337204
/locus_tag="SERP0334"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:216007"
gene complement(337593..338159)
/locus_tag="SERP0335"
/db_xref="GeneID:3240655"
CDS complement(337593..338159)
/locus_tag="SERP0335"
/note="identified by similarity to OMNI:SA0740; match to
protein family HMM PF03641; match to protein family HMM
TIGR00730"
/codon_start=1
/transl_table=11
/product="decarboxylase"
/protein_id="YP_187931.1"
/db_xref="GI:57866267"
/db_xref="GeneID:3240655"
/translation="MKRIAVYCGASKGKNPSYVKEAYELGKYMAEQGYELVFGAGSVG
IMGAIQDGILEHGGKAIGVMPKMLDEREITSQKVSELILVDSMHERKNKMTELADAFI
MAPGGAGSLEEFFEMYSWAQIGIHQKPIGVFNLNGFFEPLQHLIDHMIKEGFIDEKYQ
KLAPLYDTKESLIEGLKHYKPLGVRTYD"
misc_feature complement(337623..338156)
/locus_tag="SERP0335"
/note="Possible lysine decarboxylase; Region:
Lysine_decarbox; cl00695"
/db_xref="CDD:242034"
gene complement(338170..338619)
/locus_tag="SERP0336"
/db_xref="GeneID:3240656"
CDS complement(338170..338619)
/locus_tag="SERP0336"
/note="identified by similarity to OMNI:NTL01SA0657; match
to protein family HMM PF02639"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187932.1"
/db_xref="GI:57866268"
/db_xref="GeneID:3240656"
/translation="MKTNVIIDGDACPVVNSVIELTKGTGIFVTILRSFSHFSQQIQP
EHVKIVYVDDGPDAVDYKIVELASNNDIVITQDYGLASLLIDKVHTVMHHKGNIYHSN
NIQSLLNQRYLNAQIRRRGGRHKGPPPFTTEDRLKFEHAFRKIINQI"
misc_feature complement(338173..338613)
/locus_tag="SERP0336"
/note="hypothetical protein; Validated; Region: PRK00124"
/db_xref="CDD:178882"
gene complement(338622..339302)
/locus_tag="SERP0337"
/db_xref="GeneID:3240657"
CDS complement(338622..339302)
/locus_tag="SERP0337"
/note="identified by similarity to OMNI:SA0742"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187933.1"
/db_xref="GI:57866269"
/db_xref="GeneID:3240657"
/translation="MDKKKLIKTLINVLPIVIVPLVTERKRIKEHPDVQKVTNATSKA
TSKTTSAISNKASDVKEYVGDKKQEFDNKRELKKIAKENDPAYIEKKGEKLAKQNRKE
ADKMDKKLQKNIEKRHKEEQKQREANQKQRIKDMKKTQKYEEQVGLTPGKIDHEIEKK
GEKLEKDNRKDIKKLDKKLQKNIEKRHKEEQKQREEAEKARKKEFKKYENYVADSVVK
QHKESNHS"
gene 339499..339963
/locus_tag="SERP0338"
/db_xref="GeneID:3240658"
CDS 339499..339963
/locus_tag="SERP0338"
/note="identified by similarity to OMNI:NTL01BH0402"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187934.1"
/db_xref="GI:57866270"
/db_xref="GeneID:3240658"
/translation="MKYKIEKLDDSSVVYMRMIGTYQSDKNFEMMKTFKHWIQTNHYW
KYVEKYGVLGIALDNPLHVQSNQCRYDVVLRIDETVNDQTISKRDFTGGIYAVFKVSH
TKINIEKFFSNLENILNESHLRMRNEPIIERYIEEEGTDKVCEMLVPIYEVN"
misc_feature 339499..339951
/locus_tag="SERP0338"
/note="GyrI-like small molecule binding domain; Region:
GyrI-like; cl01368"
/db_xref="CDD:242457"
gene complement(340246..341118)
/gene="uppP"
/locus_tag="SERP0339"
/db_xref="GeneID:3240659"
CDS complement(340246..341118)
/gene="uppP"
/locus_tag="SERP0339"
/EC_number="3.6.1.27"
/note="BacA; phosphatase activity in Escherichia coli not
kinase; involved in bacitracin resistance as bacitracin
supposedly sequesters undecaprenyl disphosphate which
reduces the pool of lipid carrier available to the cell"
/codon_start=1
/transl_table=11
/product="UDP pyrophosphate phosphatase"
/protein_id="YP_187935.1"
/db_xref="GI:57866271"
/db_xref="GeneID:3240659"
/translation="MFLLELIKGIILGIVEGLTEFAPVSSTGHMILVDDMWLKSTNFL
GSQSAFTFKVVIQLGSVFAAAWVFRERFLEILHIGQHKPEPSTSGDRRSKPRRLNLIH
VLVGMVPAGILGFLFDDLIEKYLFSVPTVLIGLFIGAIYMIIADKYSKTVQHPQTVDQ
INYFQAFVIGISQAIAMWPGFSRSGSTISTGVLMKLNHKAASDFTFIMSVPIMLAASG
LSLLKHYEYIHLAHIPFYILGFLAAFIVGLIAIKTFLHLINKVKLVPFAIYRIVLVIF
IAILYFGFGIGKGI"
misc_feature complement(340273..341064)
/gene="uppP"
/locus_tag="SERP0339"
/note="undecaprenyl pyrophosphate phosphatase; Reviewed;
Region: PRK00281"
/db_xref="CDD:234712"
gene 341329..342963
/locus_tag="SERP0340"
/db_xref="GeneID:3240660"
CDS 341329..342963
/locus_tag="SERP0340"
/note="identified by match to protein family HMM PF00005;
match to protein family HMM PF00664"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187936.1"
/db_xref="GI:57866272"
/db_xref="GeneID:3240660"
/translation="MKKLTKMVLSYKLYPTLMLIMSVFLSFTVVAQNISISHFLNHLL
YYQQQSLLLLLSVIFISLILRATFNMLIQFLGDHLAFKVKHMLREQVILKKSVRSIGE
EINILTESIDGIGPFFQSYLPQVFKSMLIPIVIIITMCFVHLPTAIIMIVTAPFIPLF
YVIFGLKTRDESKDQMTYLNQFSQRFLNTAKGLITFKLLNQTKQSEQQLYKDSTRFRD
LTMRILKSAFLSGLMLEFISMLGIGLVALEAALSLVVFNHINFVTAAIAIILAPEFYN
AIKDLGQAFHTGKQSEGASDVVFSFLESEDKADSPTLKVDEQQFEQVLIKHVDFQYAN
SNHMALKNISFSVNKGEKVAIVGPSGAGKSTLAKLLSQSVTPTHGTLSFNQASLNIGF
LSQRPHIFADSIKNNIAMYDDEICDEQVIQVLDEVGLKEKVLSLKYGIYTSIGEGGEM
LSGGQMRRIELSRLLLLKPDIVIFDEPAIGLDIETEKVIQQVLEHHFSTTTVFIIAHR
DSTIRSSARRIYIESGHLIKDDSIISVTRSEVKIDQ"
misc_feature 341329..342921
/locus_tag="SERP0340"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:224055"
misc_feature <341548..342054
/locus_tag="SERP0340"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature 342301..342903
/locus_tag="SERP0340"
/note="ATP-binding cassette domain of multidrug resistance
protein-like transporters; Region: ABCC_MRP_Like; cd03228"
/db_xref="CDD:213195"
misc_feature 342397..342420
/locus_tag="SERP0340"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213195"
misc_feature order(342406..342411,342415..342423,342511..342513,
342751..342756,342847..342849)
/locus_tag="SERP0340"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213195"
misc_feature 342502..342513
/locus_tag="SERP0340"
/note="Q-loop/lid; other site"
/db_xref="CDD:213195"
misc_feature 342679..342708
/locus_tag="SERP0340"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213195"
misc_feature 342739..342756
/locus_tag="SERP0340"
/note="Walker B; other site"
/db_xref="CDD:213195"
misc_feature 342763..342774
/locus_tag="SERP0340"
/note="D-loop; other site"
/db_xref="CDD:213195"
misc_feature 342835..342855
/locus_tag="SERP0340"
/note="H-loop/switch region; other site"
/db_xref="CDD:213195"
gene 342960..344654
/locus_tag="SERP0341"
/db_xref="GeneID:3240661"
CDS 342960..344654
/locus_tag="SERP0341"
/note="identified by match to protein family HMM PF00005;
match to protein family HMM PF00664"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187937.1"
/db_xref="GI:57866273"
/db_xref="GeneID:3240661"
/translation="MKSHIHFSIDRDLICAIMVGVLSGIVTLAMFFLSGYMITQSALG
APLYALMILVVSVKLFGFLRAITRYIERLLSHKTTFTMLRNVRVQFLKMLYPVVPDIY
RRFNSSDLITKMISRVEALQNIYLRVYYPPIVIGLTAIVSVITMLFLSPLHALVITLS
MLLTLWIVPWLSAMKARKLKQQVTQTQKTFLKRYYDYKEGHEELKRFNRSDDFENTVS
QSLRQFDDMQLKERRFLSIYDYLLNLIAMFSIFMCLVLGAQQIHDGQLNAIYITSIIL
MILTLFEQAVPMSNVAYYKADTDLALEEIQEVIVPKYKIPSEHTNLKRSQNLLLEIKN
VTFKYEHQHHSTLKQINLTIEYGDKVAIIGPSGSGKSTLLHVLLGLYQIEEGEVRLNG
KDMNSINDNDKYQTFNAMLQSQYIFDGSIRDNLFSEQSDDNLKKVLEDVGLEYLNLDS
IVTLDGHNLSGGEAQRLSLARLLLRPSAGFWILDEPTTALDINNTQKIINLIESLSQT
LIIATHDLEILPRFNKIIVMNDGEIIENDSYQELMQHDGYLKKVIEMNGNEMKFFN"
misc_feature 342990..344627
/locus_tag="SERP0341"
/note="ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones]; Region: CydC;
COG4987"
/db_xref="CDD:227320"
misc_feature 342996..343805
/locus_tag="SERP0341"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature 343947..344555
/locus_tag="SERP0341"
/note="ATP-binding cassette domain of multidrug resistance
protein-like transporters; Region: ABCC_MRP_Like; cd03228"
/db_xref="CDD:213195"
misc_feature 344049..344072
/locus_tag="SERP0341"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213195"
misc_feature order(344058..344063,344067..344075,344193..344195,
344409..344414,344499..344501)
/locus_tag="SERP0341"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213195"
misc_feature 344184..344195
/locus_tag="SERP0341"
/note="Q-loop/lid; other site"
/db_xref="CDD:213195"
misc_feature 344334..344363
/locus_tag="SERP0341"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213195"
misc_feature 344397..344414
/locus_tag="SERP0341"
/note="Walker B; other site"
/db_xref="CDD:213195"
misc_feature 344421..344432
/locus_tag="SERP0341"
/note="D-loop; other site"
/db_xref="CDD:213195"
misc_feature 344487..344507
/locus_tag="SERP0341"
/note="H-loop/switch region; other site"
/db_xref="CDD:213195"
gene complement(344895..345338)
/gene="norR"
/locus_tag="SERP0342"
/db_xref="GeneID:3241845"
CDS complement(344895..345338)
/gene="norR"
/locus_tag="SERP0342"
/note="identified by match to protein family HMM PF01047"
/codon_start=1
/transl_table=11
/product="MarR family transcriptional regulator"
/protein_id="YP_187938.1"
/db_xref="GI:57866282"
/db_xref="GeneID:3241845"
/translation="MSEQHNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVL
TILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKS
EMIRPELSNASEKVATASSLSKEEVKELNRLLGKVIDAFIETKEK"
misc_feature complement(344922..345287)
/gene="norR"
/locus_tag="SERP0342"
/note="Transcriptional regulators [Transcription]; Region:
MarR; COG1846"
/db_xref="CDD:224759"
misc_feature complement(345057..345233)
/gene="norR"
/locus_tag="SERP0342"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene complement(345338..345439)
/locus_tag="SERP0343"
/db_xref="GeneID:3241846"
CDS complement(345338..345439)
/locus_tag="SERP0343"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187939.1"
/db_xref="GI:57866283"
/db_xref="GeneID:3241846"
/translation="MTLNHSVVYKTSNIDGFQSEKKENTDRMSGGEL"
gene 345560..346486
/locus_tag="SERP0344"
/db_xref="GeneID:3241847"
CDS 345560..346486
/locus_tag="SERP0344"
/note="identified by match to protein family HMM PF02492"
/codon_start=1
/transl_table=11
/product="cobalamin synthesis/P47K family protein"
/protein_id="YP_187940.1"
/db_xref="GI:57866284"
/db_xref="GeneID:3241847"
/translation="MKNNKNEKLKITIVSGFLGSGKTTFLTHYINELLKIDEKITVIM
NEFGSFDVDGNHLSELVKVYPLLNGCVCCDMKSDLVQQIEMLSHNHETDHIIIEATGI
AHPIELIMACQDPRIVQFVERPHVVSIVDALRFLQRQQYTDSTKRLMEEQLEVSDVLV
VNKLDLISVEDRDALKNQLNEVNKYSSKIYTTYGQVNIEELSQFRDQLVMTHTHSHHH
GINSMQYTFTTAIDRQLFYQFILRMPDNVLRLKGYVQFKDEPNVTYEFQYSFGMPDYE
VINGDYPLTIVLIGEQLDVNRLKNKLDVLQFS"
misc_feature 345584..346477
/locus_tag="SERP0344"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:223597"
misc_feature 345590..346108
/locus_tag="SERP0344"
/note="CobW/HypB/UreG, nucleotide-binding domain; Region:
cobW; pfam02492"
/db_xref="CDD:217066"
misc_feature 346217..346468
/locus_tag="SERP0344"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; smart00833"
/db_xref="CDD:214844"
gene 346508..346801
/locus_tag="SERP0345"
/db_xref="GeneID:3241848"
CDS 346508..346801
/locus_tag="SERP0345"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187941.1"
/db_xref="GI:57866285"
/db_xref="GeneID:3241848"
/translation="MNEDNRNKQIKFERNLITFPYLGFAFIVLLFNIFYTDVKITMVL
FGLFFAYNLGMLFIAFIRHFKRTLILTLILTILSGIAFFVLLYVFGLNHDIFG"
gene 346794..346940
/locus_tag="SERP0346"
/db_xref="GeneID:3242931"
CDS 346794..346940
/locus_tag="SERP0346"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187942.1"
/db_xref="GI:57866286"
/db_xref="GeneID:3242931"
/translation="MDSQLLYKYLFHLSIQKLCHFNVIINMKWQSFLIFKEKIKQGGI
AYGQ"
gene 346930..347871
/gene="mdh"
/locus_tag="SERP0347"
/db_xref="GeneID:3242932"
CDS 346930..347871
/gene="mdh"
/locus_tag="SERP0347"
/EC_number="1.1.1.37"
/note="Catalyzes the reversible oxidation of malate to
oxaloacetate"
/codon_start=1
/transl_table=11
/product="malate dehydrogenase"
/protein_id="YP_187943.1"
/db_xref="GI:57866287"
/db_xref="GeneID:3242932"
/translation="MVNRRKISIIGAGHTGGTLAFILAQKELGDIVLIERQQSEGMAK
GKALDILESGPIWGFDTSVHGSVNIEDIKDSDIVVMTAGIPRKSGMTREELVQTNEQI
VRETALQIATYAPHSIIIVLTNPVDVMTYTAFKASGFPKERIIGQSGILDAARYRTFI
AQELNVSVKDVNGFVLGGHGDTMLPLINNTHINGIPVKHLISEEKIDQIVERTRKGGA
EIVALLGQGSAYYAPATAIYETIDAIFNDRKRLLPSIAYLEGEYGCSDICFGVPTIIG
YQGIEKIIEVDMNNDEYQQLQHSAQAVSEVKNSLKFK"
misc_feature 346936..347862
/gene="mdh"
/locus_tag="SERP0347"
/note="malate dehydrogenase; Reviewed; Region: PRK06223"
/db_xref="CDD:180477"
misc_feature 346948..347844
/gene="mdh"
/locus_tag="SERP0347"
/note="L-lactate dehydrogenase-like malate dehydrogenase
proteins; Region: LDH-like_MDH; cd01339"
/db_xref="CDD:133424"
misc_feature order(346966..346974,347032..347037,347170..347181,
347233..347235,347293..347295,347299..347301,
347368..347370,347380..347382,347464..347466)
/gene="mdh"
/locus_tag="SERP0347"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133424"
misc_feature order(346978..346980,346993..346995,347002..347004,
347050..347055,347062..347064,347071..347076,
347080..347085,347095..347097,347101..347109,
347389..347394,347398..347400,347404..347406,
347596..347598,347617..347625,347632..347637,
347644..347646)
/gene="mdh"
/locus_tag="SERP0347"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133424"
misc_feature order(347101..347103,347107..347109,347422..347424,
347437..347439,347443..347445,347449..347451,
347500..347502,347506..347514,347665..347667,
347671..347682,347758..347760,347785..347787)
/gene="mdh"
/locus_tag="SERP0347"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:133424"
misc_feature order(347203..347205,347299..347301,347392..347394,
347464..347466,347578..347580,347614..347616)
/gene="mdh"
/locus_tag="SERP0347"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133424"
gene 348005..349561
/locus_tag="SERP0348"
/db_xref="GeneID:3242933"
CDS 348005..349561
/locus_tag="SERP0348"
/note="identified by match to protein family HMM PF00939;
match to protein family HMM TIGR00785"
/codon_start=1
/transl_table=11
/product="anion transporter family protein"
/protein_id="YP_187944.1"
/db_xref="GI:57866288"
/db_xref="GeneID:3242933"
/translation="MAKGDQYQAHTEKYHDKKSKKSYKPVWIIISFIILITILLLPTP
AGLPVMAKAALAILAFAVVMWVTEAVTYPVSATLILGLMILLLGLSPVQDLSEKLGNP
KSGDIILKGSDILGTNNALSHAFSGFSTSAVALVAAALFLAVAMQETNLHKRLALLVL
SIVGNKTRNIVIGAILVSIVLAFFVPSATARAGAVVPILLGMIAAFNVSKDSRLASLL
IITAVQAVSIWNIGIKTAAAQNIVAINFINQNLGHDVSWGEWFLYAAPWSIIMSIALY
FIMIKFMPPEHDAIEGGKELIKKELNKLGPVSHREWRLIVISVLLLFFWSTEKVLHPI
DSASITLVALGIILMPKIGVITWKGVEKKIPWGTIIVFGVGISLGNVLLKTGAAQWLS
DQTFGLMGLKHLPIIATIALITLFNILIHLGFASATSLASALIPVFISLTSTLNLGDH
AIGFVLIQQFVISFGFLLPVSAPQNMLAYGTGTFTVKDFLKTGIPLTIVGYILVIVFS
LTYWKWLGLV"
misc_feature 348128..349558
/locus_tag="SERP0348"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl17221"
/db_xref="CDD:247775"
misc_feature 348374..349555
/locus_tag="SERP0348"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:223547"
misc_feature order(348392..348445,348515..348559,348563..348568,
348572..348625,348650..348721,348785..348829,
348842..348844,348938..348973,348995..349021,
349034..349051,349094..349150,349223..349264,
349274..349279,349337..349396,349484..349522)
/locus_tag="SERP0348"
/note="transmembrane helices; other site"
/db_xref="CDD:238344"
gene 349758..351131
/locus_tag="SERP0349"
/db_xref="GeneID:3241331"
CDS 349758..351131
/locus_tag="SERP0349"
/note="identified by match to protein family HMM PF03441"
/codon_start=1
/transl_table=11
/product="deoxyribodipyrimidine photolyase"
/protein_id="YP_187945.1"
/db_xref="GI:57866289"
/db_xref="GeneID:3241331"
/translation="MAIGVILNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEE
AKKKAQYYYGSIQKFMYELQRYDIEPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHE
EYDILHQRKRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRD
EYDYHLEDISKVVVKSQHKIKEDYHSYGISERDVQNRWSEFLSQDIENYKENREYLPE
VLTSQLSIYLAYGMIDIIQVFNDLLQNYDKNEQNYETFIRELIFREFYYVLMTNYPET
AHVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQF
LTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF
DNNARYIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVM
SEFKALD"
misc_feature 349758..351128
/locus_tag="SERP0349"
/note="Deoxyribodipyrimidine photolyase [DNA replication,
recombination, and repair]; Region: PhrB; COG0415"
/db_xref="CDD:223492"
misc_feature <349941..350240
/locus_tag="SERP0349"
/note="DNA photolyase; Region: DNA_photolyase; pfam00875"
/db_xref="CDD:216167"
gene complement(351181..351450)
/locus_tag="SERP0350"
/db_xref="GeneID:3241339"
CDS complement(351181..351450)
/locus_tag="SERP0350"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187946.1"
/db_xref="GI:57866296"
/db_xref="GeneID:3241339"
/translation="MIIEVILMVCLIIIQLMIGHLWHQIGWSYTKAILLMCLPLGIGL
YLMQLFYYEPRYTNWEVPLKTKLNLKYMYILTLLEYILIYVCFFM"
gene complement(351447..352064)
/locus_tag="SERP0351"
/db_xref="GeneID:3241340"
CDS complement(351447..352064)
/locus_tag="SERP0351"
/note="identified by similarity to OMNI:NTL01SA0669"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187947.1"
/db_xref="GI:57866297"
/db_xref="GeneID:3241340"
/translation="MQSRYFARIYFIILFVISMTESHIFNFMTLNLFLAYVPFELCLL
LKLFKPVKAFEWPLFIVFGLIFLLLVPNTFYMITDLIHLNQFQFNFLAGLNITEWIYF
TYLILGVLLAIYLTILIFLEIAHFTSYVWLNRLLIVILMFLNGLGIYIGRFLRLHTVY
LLNAPLKIVKEVFLIIDVKALLFVVLMVLIQATVILFIKGVRLYQ"
misc_feature complement(351480..351980)
/locus_tag="SERP0351"
/note="Protein of unknown function (DUF1361); Region:
DUF1361; pfam07099"
/db_xref="CDD:219296"
gene 352059..352244
/locus_tag="SERP0352"
/db_xref="GeneID:3241341"
CDS 352059..352244
/locus_tag="SERP0352"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187948.1"
/db_xref="GI:57866298"
/db_xref="GeneID:3241341"
/translation="MHNHALLSIEFDNRELMITFTVRHFKQFEVFSVYTDVKAKKNYT
VCSLDFSQLDKGFVESL"
gene 352474..353637
/gene="norA"
/locus_tag="SERP0353"
/db_xref="GeneID:3240912"
CDS 352474..353637
/gene="norA"
/locus_tag="SERP0353"
/note="identified by similarity to EGAD:18536; match to
protein family HMM PF00083"
/codon_start=1
/transl_table=11
/product="quinolone resistance protein NorA"
/protein_id="YP_187949.1"
/db_xref="GI:57866299"
/db_xref="GeneID:3240912"
/translation="MKKQLFILYFNIFLIFLGIGLVIPVLPVYLKDLGLKGSDLGMLV
AAFALSQMIISPFGGTLADKLGKKLIICIGLVFFAVSEFMFAAGQSFTILIISRVLGG
FSAGMVMPGVTGMIADISPGADKAKNFGYMSAIINSGFILGPGFGGFLAEISHRLPFY
VAGTLGVVAFIMSVLLIHNPQKATTDGFHQYQPELFTKINWKVFITPVILTLVLAFGL
SAFETLFSLYTADKVNYTPKDISIAIIGGGVFGALFQVFFFDKFMKYMSELNFIAWSL
LYSAIVLVMLVLANGYWTIMIISFVVFIGFDMIRPALTNYFSNIAGKRQGFAGGLNST
FTSMGNFIGPLVAGALFDVNLEFPLYMAIAVSLSGIIIIFIEKGLKSRRKEAN"
misc_feature 352603..353598
/gene="norA"
/locus_tag="SERP0353"
/note="D-galactonate transporter; Region: 2A0114;
TIGR00893"
/db_xref="CDD:233174"
misc_feature 352603..353598
/gene="norA"
/locus_tag="SERP0353"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(352603..352605,352612..352617,352624..352626,
352636..352641,352645..352650,352786..352791,
352798..352803,352810..352815,352822..352824,
352858..352863,352870..352875,352891..352893,
353116..353118,353125..353130,353137..353142,
353149..353151,353191..353193,353203..353205,
353215..353217,353224..353226,353236..353238,
353380..353382,353389..353394,353401..353403,
353413..353418,353425..353427,353455..353460,
353467..353472,353479..353484,353491..353493)
/gene="norA"
/locus_tag="SERP0353"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 353959..354429
/locus_tag="SERP0354"
/db_xref="GeneID:3240913"
CDS 353959..354429
/locus_tag="SERP0354"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187950.1"
/db_xref="GI:57866300"
/db_xref="GeneID:3240913"
/translation="MKLKNLFLSSVAVILSICLVLLLFLATNQNALAKVHKTICTFTK
VKTVSHNDIFPNLNMNHVAEASEKNSDHQKNVNKTNQQSVRTQASYDFNPQECKVIAL
NYAENHLSKKYNIERTFNESLHSVYVFSSENKLHQTKVKVNKSGTVHASNINNH"
gene 354519..355025
/locus_tag="SERP0355"
/db_xref="GeneID:3240914"
CDS 354519..355025
/locus_tag="SERP0355"
/note="identified by match to protein family HMM PF04073"
/codon_start=1
/transl_table=11
/product="ebsC protein"
/protein_id="YP_187951.1"
/db_xref="GI:57866301"
/db_xref="GeneID:3240914"
/translation="MIVIKGENMSKTKKTNAMRILDRAKINYQMNTYEVTDKHQHGEE
IAQLVGAKIEEVFKTLVLENSNHEHYVFVIPVNETLDMKKAAHVVNEKKLNLMPLDQL
KQVTGYVRGGCSPIGMKHSFKTTIDASAKNLEKVYISGGQRGMQIIIHVNDLIDMTKA
QVESITQN"
misc_feature 354558..355013
/locus_tag="SERP0355"
/note="This CD includes cysteinyl-tRNA(Pro) deacylases
from Haemophilus influenzae and Escherichia coli and other
related bacterial proteins. These trans-acting,
single-domain proteins are homologs of ProX and also the
cis-acting prolyl-tRNA synthetase (ProRS)...; Region:
YbaK_deacylase; cd00002"
/db_xref="CDD:237976"
misc_feature order(354690..354692,354849..354854,354933..354935)
/locus_tag="SERP0355"
/note="putative deacylase active site [active]"
/db_xref="CDD:237976"
gene complement(355125..355223)
/locus_tag="SERP0356"
/db_xref="GeneID:3240915"
CDS complement(355125..355223)
/locus_tag="SERP0356"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187952.1"
/db_xref="GI:57866302"
/db_xref="GeneID:3240915"
/translation="MATLTYFNQNLPFSIKNNHFMTKIKTPFRLGV"
gene 355256..356014
/locus_tag="SERP0357"
/db_xref="GeneID:3240916"
CDS 355256..356014
/locus_tag="SERP0357"
/note="identified by match to protein family HMM PF00455"
/codon_start=1
/transl_table=11
/product="DeoR family transcriptional regulator"
/protein_id="YP_187953.1"
/db_xref="GI:57866303"
/db_xref="GeneID:3240916"
/translation="MISEKRQNLILQELTQKDFLTLQDLVDRTGCSASTIRRDLSKLQ
NMGKLQRVHGGATIHQNRVKEPKLSEKRTQNLREKQEIAKRAACDIQDHECIFLDAGS
STFELIQYIEAKDITVVTNGMTHVEELLKHGIKTLMVGGQVKPTTMATVGANALETLR
RYCFDRAFIGMNGIDVKYGLTTPDEQEALIKETAMKLSNHKYVLVDQSKFNQIYFARV
PILDGLSIITSQKAMQSKMTEAYMNEFNFIGGKS"
misc_feature 355256..355948
/locus_tag="SERP0357"
/note="Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism];
Region: GlpR; COG1349"
/db_xref="CDD:224268"
misc_feature 355271..355423
/locus_tag="SERP0357"
/note="helix_turn_helix, Deoxyribose operon repressor;
Region: HTH_DEOR; smart00420"
/db_xref="CDD:197714"
misc_feature 355472..355948
/locus_tag="SERP0357"
/note="DeoR C terminal sensor domain; Region: DeoRC;
pfam00455"
/db_xref="CDD:201239"
gene 356011..356931
/gene="fruK"
/locus_tag="SERP0358"
/db_xref="GeneID:3240917"
CDS 356011..356931
/gene="fruK"
/locus_tag="SERP0358"
/EC_number="2.7.1.56"
/note="identified by similarity to EGAD:107874; match to
protein family HMM PF00294"
/codon_start=1
/transl_table=11
/product="1-phosphofructokinase"
/protein_id="YP_187954.1"
/db_xref="GI:57866304"
/db_xref="GeneID:3240917"
/translation="MIYTVTFNPSIDYIIFTDGFEISGLNRAKATYKFAGGKGINVSR
VLKTLDVDSTALGFSGGFPGDFIAQTLEDSNIQSDFVQVDEDTRINVKLKSGQETEIN
APGPKVTHAQFEQLLSQIRRTTNDDIVIVAGSVPNSIPSDAYAQIAQITEKTGAQLVV
DAEKDLVETVLPYRPLFIKPNKDELEVMFNTTVKSDEDVIKYGKEILKKGAQSVIISL
GGDGAIYVDQHQSIKAVNPQGHVVNTVGSGDSTVAGMVAGLSMGLNIDEAFQQAVASG
TATAFSEDLATRDAIENIKSQVTISVLDGE"
misc_feature 356011..356922
/gene="fruK"
/locus_tag="SERP0358"
/note="Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate transport
and metabolism]; Region: FruK; COG1105"
/db_xref="CDD:224030"
misc_feature 356011..356868
/gene="fruK"
/locus_tag="SERP0358"
/note="1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose...;
Region: FruK_PfkB_like; cd01164"
/db_xref="CDD:238570"
misc_feature order(356137..356139,356149..356151,356167..356169,
356173..356175,356404..356406)
/gene="fruK"
/locus_tag="SERP0358"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:238570"
misc_feature order(356491..356493,356545..356547,356551..356553,
356659..356661,356677..356679,356749..356751,
356755..356757)
/gene="fruK"
/locus_tag="SERP0358"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:238570"
gene 356937..358889
/gene="fruA"
/locus_tag="SERP0359"
/db_xref="GeneID:3241739"
CDS 356937..358889
/gene="fruA"
/locus_tag="SERP0359"
/note="identified by similarity to GP:9501781; match to
protein family HMM PF00359; match to protein family HMM
PF02378; match to protein family HMM PF02379; match to
protein family HMM TIGR00829; match to protein family HMM
TIGR00848; match to protein family HMM TIGR01427"
/codon_start=1
/transl_table=11
/product="PTS system, fructose-specific IIABC components"
/protein_id="YP_187955.1"
/db_xref="GI:57866311"
/db_xref="GeneID:3241739"
/translation="MRITELLTKETIAMDLDASDKSGVITELVNQLDKAGKLSDPVSF
KEAIHNRESQSTTGIGEGIAIPHAKVAAVKTPAIAFGKSKEGVDYQSLDMQPAHLFFM
IAAPEGGAQTHLDALAKLSGILMDEKIREKLIHAESPEEVLNIIDEADDEATKEEEAE
ANENATVSTDNSNQDNNEPYVLAVTACPTGIAHTYMARDALKKQAEKMNIKIKVETNG
SSGIKNHLTEQDIERATGIIVAADVHVETDRFDGKNVVEVPVADGIKRPEELINTALD
TNRKPFVAQGGSKKHDDNEEKLSPGKAFYKHLMNGVSNMLPLVISGGILMAIVFLFGA
NSFKPDSSEYNAFAEQLWNIGKNSAFALIIPILAGFIARSIADKPGFAAGLVGGMLAI
SGGSGFIGGIIAGFLAGYLTQGIKYITRKLPQAIEGLKPTLIYPLLSVSITGLLMVYV
FNPPAAWLNHLLLNGLNSLSGSNIMLLGLVIGAMMAIDMGGPFNKAAYVFATAALTEG
NAAPITAAMIGGMIPPLAIATAMLIFRRKFTKEQRGSIVPNYVMGLSFITEGAIPFAA
ADPLRVIPSMMVGSGVAGAIALGLGSSIKAPHGGIFVIIGTDFNHILQTLIALVVGTL
VSALIYGFLKPKVTENEIQASQAMDE"
misc_feature 356937..358823
/gene="fruA"
/locus_tag="SERP0359"
/note="PTS system 2-O-a-mannosyl-D-glycerate specific
transporter subunit IIABC; Provisional; Region: PRK09765"
/db_xref="CDD:182066"
misc_feature 356955..357374
/gene="fruA"
/locus_tag="SERP0359"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:238129"
misc_feature order(357087..357089,357135..357137)
/gene="fruA"
/locus_tag="SERP0359"
/note="active site"
/db_xref="CDD:238129"
misc_feature 357135..357137
/gene="fruA"
/locus_tag="SERP0359"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238129"
misc_feature 357477..357761
/gene="fruA"
/locus_tag="SERP0359"
/note="PTS_IIB_fructose: subunit IIB of enzyme II (EII) of
the fructose-specific phosphoenolpyruvate:carbohydrate
phosphotransferase system (PTS). In this system, EII (also
referred to as FruAB) is a fructose-specific permease made
up of two proteins (FruA and...; Region: PTS_IIB_fructose;
cd05569"
/db_xref="CDD:99911"
misc_feature order(357495..357506,357510..357518)
/gene="fruA"
/locus_tag="SERP0359"
/note="P-loop; other site"
/db_xref="CDD:99911"
misc_feature order(357495..357497,357501..357506,357513..357518)
/gene="fruA"
/locus_tag="SERP0359"
/note="active site"
/db_xref="CDD:99911"
misc_feature 357495..357497
/gene="fruA"
/locus_tag="SERP0359"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:99911"
misc_feature 357846..358871
/gene="fruA"
/locus_tag="SERP0359"
/note="Phosphotransferase system, fructose-specific IIC
component [Carbohydrate transport and metabolism]; Region:
FruA; COG1299"
/db_xref="CDD:224218"
gene 359264..360436
/gene="nagA"
/locus_tag="SERP0360"
/db_xref="GeneID:3241740"
CDS 359264..360436
/gene="nagA"
/locus_tag="SERP0360"
/EC_number="3.5.1.25"
/note="identified by similarity to EGAD:107401; match to
protein family HMM PF01979; match to protein family HMM
TIGR00221"
/codon_start=1
/transl_table=11
/product="N-acetylglucosamine-6-phosphate deacetylase"
/protein_id="YP_187956.1"
/db_xref="GI:57866312"
/db_xref="GeneID:3241740"
/translation="MSEYVLTNGIVYTENEMINNGYVHIKDGKILDVGKCPFHPSSSH
NTIDIIDVKKRHILPGFIDIHIHGGYGEDAMDASEQGLQHLAESLLSEGTTSFLATTM
TQSTVNIERALQTIAKYTQQQDVTNAAEIVGVHLEGPFISEHKVGAQHPQFVQRPTVD
KIKSFQEVANGLIKIITYAPEVDGATETLKTMKNDIIFSIGHTVATFDQANTAVSHGA
KHITHLYNAATGFQHREPGVFGAAWLNQGLHTEMIVDGVHSHPASIALAYRLKGNQSC
YLITDAMRAKGMPEGHYDLGGQDVIVKGSEARLSSGALAGSILKMNEGLKNLIQFTGD
TIEHLWRVTSLNQAITLGIDDIKGSIKIGKDADIVIIDDACNVETTIKNGKYHAFK"
misc_feature 359273..360430
/gene="nagA"
/locus_tag="SERP0360"
/note="N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism]; Region: NagA;
COG1820"
/db_xref="CDD:224733"
misc_feature 359273..360415
/gene="nagA"
/locus_tag="SERP0360"
/note="N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to...; Region:
NagA; cd00854"
/db_xref="CDD:238434"
misc_feature order(359456..359458,359462..359464,359672..359674,
359705..359707,359867..359869,359930..359932,
359939..359944,360035..360037,360104..360106,
360203..360205)
/gene="nagA"
/locus_tag="SERP0360"
/note="active site"
/db_xref="CDD:238434"
misc_feature order(359936..359938,359954..359956,359960..359965,
359969..359971,359990..359995,360032..360043,
360047..360052,360056..360061,360068..360070)
/gene="nagA"
/locus_tag="SERP0360"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238434"
gene 360673..362022
/locus_tag="SERP0361"
/db_xref="GeneID:3241741"
CDS 360673..362022
/locus_tag="SERP0361"
/note="identified by match to protein family HMM PF00571;
match to protein family HMM PF01595; match to protein
family HMM PF03471"
/codon_start=1
/transl_table=11
/product="CBS domain-containing protein"
/protein_id="YP_187957.1"
/db_xref="GI:57866313"
/db_xref="GeneID:3241741"
/translation="METSTIISLAIFFLLIALTTVFVGSEFALVKVRSTRIEQLVDEG
NKSAKIVKKMIDNLDYYLSACQLGITVTSLGLGWLGEPTFEKMMHPLFELLHLPSPLT
TTISFVVSFIVVTYLHVVLGELAPKSFAIQHTEQLALLYSRPLFYFGNFMKPLIWLMN
GSSRVIVRMFGFDPDAQTDAMSEEEIKIIINNSYNGGEINQTELAYMQNIFSFDERHA
KDIMVPRTQMVTLNEPFNVDELLDTIKEHQFTRYPITEDGDKDHVKGFINVKEFLTEY
ASGKPIKIANYIHELPMISETTRISDALVRMQREHVHISLIIDEYGGTAGILTMEDIL
EEIVGEIRDEFDDDEVNDIVKLDDHTYQINGRVLLDDLNEKFGIEFEDSEDIDTIGGW
LQSQNTNLQKDDFVDTEYDRWTITEIDNHQIIWVNLNYEFNSGRPSVNEEQEDDERD"
misc_feature 360733..361950
/locus_tag="SERP0361"
/note="Hemolysins and related proteins containing CBS
domains [General function prediction only]; Region: TlyC;
COG1253"
/db_xref="CDD:224173"
misc_feature 360733..361281
/locus_tag="SERP0361"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:216595"
misc_feature 361348..361680
/locus_tag="SERP0361"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:239963"
misc_feature 361732..361950
/locus_tag="SERP0361"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:215020"
gene 362236..363075
/locus_tag="SERP0362"
/db_xref="GeneID:3241742"
CDS 362236..363075
/locus_tag="SERP0362"
/note="identified by match to protein family HMM PF00248"
/codon_start=1
/transl_table=11
/product="aldo/keto reductase"
/protein_id="YP_187958.1"
/db_xref="GI:57866314"
/db_xref="GeneID:3241742"
/translation="MTNDVQILNNGYPMPAVGLGVYKIADEQMEEVVRTALDAGYRAF
DTAYFYGNEKALGSALKHSNVERDELFITSKLWNDYQGYDQTIEYFNKSLDNLGLDYL
DLFLIHWPCENDQLYIESYKALEHLYEEGKIKAIGVCNFKIHHLEKLMKETKITPQVN
QIELHPYFNQQDVQDFCDEHDIKVTAWMPLMRNKGLLDDPVITDIAHRYDKTPAQIVL
RWHLAHNRIIIPKSQTPKRIKENFDIFDFNLELTDVAEIDSLNKNARQGKDPDDVSIG
DLK"
misc_feature 362260..363015
/locus_tag="SERP0362"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature 362287..363021
/locus_tag="SERP0362"
/note="Aldo/keto reductase family; Region: Aldo_ket_red;
pfam00248"
/db_xref="CDD:215817"
misc_feature order(362293..362301,362368..362370,362383..362385,
362458..362460,362557..362562,362650..362655,
362716..362718,362794..362811,362875..362877,
362920..362931,362944..362946,362953..362958)
/locus_tag="SERP0362"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(362368..362370,362383..362385,362458..362460,
362557..362559)
/locus_tag="SERP0362"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene 363278..364384
/locus_tag="SERP0363"
/db_xref="GeneID:3241743"
CDS 363278..364384
/locus_tag="SERP0363"
/note="identified by match to protein family HMM PF00535"
/codon_start=1
/transl_table=11
/product="glycosyl transferase, group 2 family protein"
/protein_id="YP_187959.1"
/db_xref="GI:57866315"
/db_xref="GeneID:3241743"
/translation="MKIRVIVPCYNEGEVVLKTYDKLTEIMKKDSLIKNYEYDLLFIN
DGSTDTTIHHIKNIVAYDNHVKYLSFSRNFGKEAAMIAGYQHSTMHDAVIMIDGDLQH
PPEYIPQMIEGYIEGYDQVVAKRNRQGENFVRKTLSRCYYKLINAFVEDIQFEDGVGD
FRLLSRRAVQALTTLDEYNRFSKGLFEWIGYETKVFQYENVTREDGESKWTFRKLLNY
GIDGLISFNNKPLRMMIYLGMFTFSISILYIIYLLINILINGINIPGYFTTIAAILLL
GGIQLMSIGVVGEYIGRIYYEVKHRPKYIVENSNIQTENLDMRYNALNLNKNRNNKRS
NDLYKLSSFYKVKTYSDTYASNYSQDEGFKERVH"
misc_feature 363281..364198
/locus_tag="SERP0363"
/note="undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase; Provisional;
Region: PRK10714"
/db_xref="CDD:182669"
misc_feature 363290..363850
/locus_tag="SERP0363"
/note="Bacterial DPM1_like enzymes are related to
eukaryotic DPM1; Region: DPM1_like_bac; cd04187"
/db_xref="CDD:133030"
misc_feature order(363299..363301,363305..363307,363572..363574)
/locus_tag="SERP0363"
/note="Ligand binding site; other site"
/db_xref="CDD:133030"
misc_feature order(363410..363412,363569..363574)
/locus_tag="SERP0363"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133030"
misc_feature 363566..363574
/locus_tag="SERP0363"
/note="DXD motif; other site"
/db_xref="CDD:133030"
gene complement(364454..365419)
/gene="saeS"
/locus_tag="SERP0364"
/db_xref="GeneID:3241744"
CDS complement(364454..365419)
/gene="saeS"
/locus_tag="SERP0364"
/note="identified by similarity to GP:5726301; match to
protein family HMM PF00512; match to protein family HMM
PF02518"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase SaeS"
/protein_id="YP_187960.1"
/db_xref="GI:57866316"
/db_xref="GeneID:3241744"
/translation="MWFNGHMTLTLAITTMITSCLTLSICSIFINPLIQKIKQFNIKT
KQFINHEKFIDDETFQSPREIKELNDSFNKMAYEINNQMNMIKNEQQEKTEIIQNLAH
DLKTPLAGIRSYSEGLRDGVISDPQEVHEAYEILIKQANRLSILFDDITHVINLNTGR
SYPLELIQLDQLLVNILQPYEQHIKQENRTLEVNFCTDIDAFYQYRPPIERILTNLLD
NALKFSNSGSRIDIIISECKENDVISISIKDEGIGIVPELQSRIFERTFRVEDSRNTK
TGGSGLGLYIANELAQQIDASITVQSDLDIGTTMTLTLKKFQFKK"
misc_feature complement(364472..365362)
/gene="saeS"
/locus_tag="SERP0364"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature complement(364970..365152)
/gene="saeS"
/locus_tag="SERP0364"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(364970..364972,364982..364984,
364991..364993,365003..365005,365012..365014,
365024..365026,365078..365080,365087..365089,
365099..365101,365108..365110,365120..365122,
365132..365134))
/gene="saeS"
/locus_tag="SERP0364"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(365114..365116)
/gene="saeS"
/locus_tag="SERP0364"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(364478..364795)
/gene="saeS"
/locus_tag="SERP0364"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature complement(order(364490..364492,364496..364501,
364514..364516,364520..364522,364568..364579,
364658..364663,364667..364669,364673..364675,
364679..364681,364754..364756,364763..364765,
364775..364777))
/gene="saeS"
/locus_tag="SERP0364"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(364763..364765)
/gene="saeS"
/locus_tag="SERP0364"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(order(364571..364573,364577..364579,
364661..364663,364667..364669))
/gene="saeS"
/locus_tag="SERP0364"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene complement(365509..366198)
/gene="saeR"
/locus_tag="SERP0365"
/db_xref="GeneID:3241745"
CDS complement(365509..366198)
/gene="saeR"
/locus_tag="SERP0365"
/note="identified by match to protein family HMM PF00072;
match to protein family HMM PF00486"
/codon_start=1
/transl_table=11
/product="DNA-binding response regulator SaeR"
/protein_id="YP_187961.1"
/db_xref="GI:57866317"
/db_xref="GeneID:3241745"
/translation="MTHLLIVDDEKDIVDICQTYFEYEGYQVTTTTCGKEALKLLSSD
IDIMILDIMMPEVSGYDIVKKMKDMQLDIPFIYLTAKTQEHDTIYALTLGADDYIKKP
FSPRELVLRTNNLLARMSKSNHSNKIEQLEFDGLVLKNLSKTLTINNIEIPMRIKEFE
LLWYLASREGEVISKSELLEKVWGYDYYEDANTVNVHIHRIREKLEKHDFLPYTITTV
WGLGYKFERSR"
misc_feature complement(365521..366192)
/gene="saeR"
/locus_tag="SERP0365"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature complement(365851..366186)
/gene="saeR"
/locus_tag="SERP0365"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(365893..365898,365905..365907,
365962..365964,366022..366024,366046..366048,
366172..366177))
/gene="saeR"
/locus_tag="SERP0365"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(366046..366048)
/gene="saeR"
/locus_tag="SERP0365"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(366022..366030,366034..366039))
/gene="saeR"
/locus_tag="SERP0365"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(365890..365898)
/gene="saeR"
/locus_tag="SERP0365"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature complement(365524..365808)
/gene="saeR"
/locus_tag="SERP0365"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature complement(order(365533..365535,365548..365550,
365584..365589,365611..365613,365620..365622,
365674..365679,365734..365736))
/gene="saeR"
/locus_tag="SERP0365"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene complement(366173..366646)
/locus_tag="SERP0366"
/db_xref="GeneID:3241160"
CDS complement(366173..366646)
/locus_tag="SERP0366"
/note="identified by similarity to OMNI:NTL01BH2256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187962.1"
/db_xref="GI:57866332"
/db_xref="GeneID:3241160"
/translation="MKKISLFIIFLIRVISGIVIFRQGWEKFTGDFTLNGLVPVIRDN
TDSPQWYKWFFEHIVAHTTGLFNIIVPLGEMAIGLGLILGIFAYAASFFGAFVMINYI
LADMIFTYPLQLAFFIILLMSHSLLAKVSLKEIIAYFRDRNNRGEDKHDPLTNRG"
misc_feature complement(<366335..366646)
/locus_tag="SERP0366"
/note="Predicted membrane protein [Function unknown];
Region: COG2259"
/db_xref="CDD:225168"
gene complement(366697..367134)
/locus_tag="SERP0367"
/db_xref="GeneID:3241161"
CDS complement(366697..367134)
/locus_tag="SERP0367"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_187963.1"
/db_xref="GI:57866333"
/db_xref="GeneID:3241161"
/translation="MNTKYLLAVGAIVTSLTLGACGNSNSESDHANHKDKQQEDSNVK
TDTTKKLSGNFESKNGEKVEGKAKIENGKLMLENYKSSKGPDLYVYLTKNGDIKSGKK
ISTVDYNKSKQTFDLKNVDLEKYNEVTIYCEKAHVIFGGAKLK"
misc_feature complement(366700..366969)
/locus_tag="SERP0367"
/note="Electron transfer DM13; Region: DM13; pfam10517"
/db_xref="CDD:220794"
gene 367540..367638
/locus_tag="SERP0368"
/db_xref="GeneID:3241162"
CDS 367540..367638
/locus_tag="SERP0368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187964.1"
/db_xref="GI:57866334"
/db_xref="GeneID:3241162"
/translation="MANPITYDLRSKDVSHYILSTNKKRLGQKVPG"
gene complement(367730..367885)
/locus_tag="SERP0369"
/db_xref="GeneID:3241163"
CDS complement(367730..367885)
/locus_tag="SERP0369"
/note="identified by similarity to GP:8918792"
/codon_start=1
/transl_table=11
/product="truncated IS1272 transposase"
/protein_id="YP_187965.1"
/db_xref="GI:57866335"
/db_xref="GeneID:3241163"
/translation="MCKEYNMTQHTLPMESSVLIPTNNISRHVNDIVETIPDTEFDEF
SHHRGLI"
misc_feature complement(<367739..367885)
/locus_tag="SERP0369"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3666"
/db_xref="CDD:226192"
gene complement(368235..368834)
/locus_tag="SERP0370"
/db_xref="GeneID:3241164"
CDS complement(368235..368834)
/locus_tag="SERP0370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187966.1"
/db_xref="GI:57866336"
/db_xref="GeneID:3241164"
/translation="MIIYILINIAIVLLILGFDLYRHRFRQLKFSSILLSVLINSMID
IFAINQFNFITMFTVTLFMIWTLLQIYLNFKLYPFVISDQKFIAIILAIVISLLQFIT
DKSSTQSVYMSIPYLSPTIFIIGAILLFVGTFKIDEVERLSLFRKIKRPMTTGTIIII
LSLISTMILTPFWYVFLIIYSLLIGFILWQGVFFIKDKK"
gene complement(368937..369575)
/locus_tag="SERP0371"
/db_xref="GeneID:3241165"
CDS complement(368937..369575)
/locus_tag="SERP0371"
/note="identified by similarity to GP:2808502; match to
protein family HMM PF04055"
/codon_start=1
/transl_table=11
/product="exsD protein"
/protein_id="YP_187967.1"
/db_xref="GI:57866337"
/db_xref="GeneID:3241165"
/translation="MFVRTAGCDYRCSWCDSAFTWDGSAKEDIKLMTAEEIYDALLEI
GGHRFNHVTISGGNPALIKGIQELVDLFEDKHIYTALETQGSRFQSWMTQIDDLTISP
KPPSSGMKTNLEILDSVINQCTFHSLNLKVVIFDDADYDFAKLIHHRYPNIPFYLQVG
NPYLDDNVDQHTDKLLERYEQLVDRVMQSSDMNHVYVLPQLHTLLWSNKKGV"
misc_feature complement(368940..369575)
/locus_tag="SERP0371"
/note="7-cyano-7-deazaguanosine (preQ0) biosynthesis
protein QueE; Region: Bsubt_queE; TIGR03365"
/db_xref="CDD:132408"
gene complement(369651..370070)
/locus_tag="SERP0372"
/db_xref="GeneID:3241335"
CDS complement(369651..370070)
/locus_tag="SERP0372"
/note="identified by match to protein family HMM PF01242"
/codon_start=1
/transl_table=11
/product="6-pyruvoyl tetrahydrobiopterin synthase"
/protein_id="YP_187968.1"
/db_xref="GI:57866293"
/db_xref="GeneID:3241335"
/translation="MQQIYPSVTHPYQFELNKDFNFSAAHYIPFEEAGKCIRTHGHTY
YVNLTIAGNTLDKCGFLVNFRDLKKLVHEQFDHYLLNDLPAFKDKSPSTEIVAQTIYH
IIQKELNQRENQPKCVQVYLRETPSSYVVYRPKEDQV"
misc_feature complement(369666..370028)
/locus_tag="SERP0372"
/note="6-pyruvoyl tetrahydropterin synthase; Region: PTPS;
pfam01242"
/db_xref="CDD:216384"
misc_feature complement(order(369681..369683,369699..369701,
369945..369947,369951..369953))
/locus_tag="SERP0372"
/note="active site"
/db_xref="CDD:238351"
gene complement(370075..370746)
/locus_tag="SERP0373"
/db_xref="GeneID:3241336"
CDS complement(370075..370746)
/locus_tag="SERP0373"
/note="identified by match to protein family HMM
TIGR00364"
/codon_start=1
/transl_table=11
/product="exoenzyme S synthesis protein B"
/protein_id="YP_187969.1"
/db_xref="GI:57866294"
/db_xref="GeneID:3241336"
/translation="MSQNDLNKEKALVVFSGGQDSTTCLFYAKKHFKEVELVTFNYGQ
RHDKEIEVAKKIAKEQNLKHHILDMSLLSQLTPNALTQHELSIEDNDDGIPNTFVPAR
NLLFLSFAGALAYQIHAKHIITGVCETDFSGYPDCRDSFIKSMNVTLSLSMDKDFVIH
TPLMWLDKAQTWALSDKLGVLDYIRHNTLTCYNGIIGDGCGECPACHLRARGLKHYLE
HKGEE"
misc_feature complement(370102..370719)
/locus_tag="SERP0373"
/note="ExsB is a transcription regulator related protein.
It is a subfamily of a Adenosine nucleotide binding
superfamily of proteins. This protein family is
represented by a single member in nearly every completed
large (> 1000 genes) prokaryotic genome. In...; Region:
ExsB; cd01995"
/db_xref="CDD:238953"
misc_feature complement(order(370612..370614,370618..370620,
370684..370695,370699..370707))
/locus_tag="SERP0373"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238953"
gene 371043..371630
/gene="pabA"
/locus_tag="SERP0374"
/db_xref="GeneID:3241337"
CDS 371043..371630
/gene="pabA"
/locus_tag="SERP0374"
/EC_number="4.1.3.27"
/note="identified by similarity to EGAD:15630; match to
protein family HMM PF00117; match to protein family HMM
TIGR00566"
/codon_start=1
/transl_table=11
/product="para-aminobenzoate synthase, glutamine
amidotransferase, component II"
/protein_id="YP_187970.1"
/db_xref="GI:57866295"
/db_xref="GeneID:3241337"
/translation="MILMIDNQDSFTYNLIDYIKVQTTEEVKIISVNDLMTQHLDALN
PRAIVISPGPGKPSDYPILSSVLEIFHRHVPILGVCLGFQLIIEYFGGNIIHNDKPIH
GHITKIRHSNEGIFKGLPSYFNVMRYHSLMADPSTIPSALKVTALNNENVIMAVAHHK
YPIYGLQYHPESILSEYGHEQLNLFLTEVGVKYAH"
misc_feature 371046..371600
/gene="pabA"
/locus_tag="SERP0374"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Anthranilate synthase; Region:
GATase1_Anthranilate_Synthase; cd01743"
/db_xref="CDD:153214"
misc_feature 371049..371609
/gene="pabA"
/locus_tag="SERP0374"
/note="Glutamine amidotransferase class-I; Region: GATase;
pfam00117"
/db_xref="CDD:215729"
misc_feature order(371196..371201,371205..371207,371280..371285,
371292..371294,371424..371435)
/gene="pabA"
/locus_tag="SERP0374"
/note="glutamine binding [chemical binding]; other site"
/db_xref="CDD:153214"
misc_feature order(371280..371282,371547..371549,371553..371555)
/gene="pabA"
/locus_tag="SERP0374"
/note="catalytic triad [active]"
/db_xref="CDD:153214"
gene 371620..373381
/gene="pabB"
/locus_tag="SERP0375"
/note="para-aminobenzoate synthase, component I, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to OMNI:NTL01SPL1565"
/pseudo
/db_xref="GeneID:3241338"
gene 373430..373636
/locus_tag="SERP0376"
/db_xref="GeneID:3240918"
CDS 373430..373636
/locus_tag="SERP0376"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187971.1"
/db_xref="GI:57866305"
/db_xref="GeneID:3240918"
/translation="MTLLWLAILILLTVLGKKMSNQAIKNNQVLIAKLIATITTFCAF
VLVYLLMQSIMPHIIKLMNVFYHH"
gene 373655..374390
/locus_tag="SERP0377"
/note="conserved hypothetical protein, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to OMNI:SA0776"
/pseudo
/db_xref="GeneID:3240919"
gene 374374..375378
/locus_tag="SERP0378"
/db_xref="GeneID:3240920"
CDS 374374..375378
/locus_tag="SERP0378"
/note="identified by match to protein family HMM PF02626"
/codon_start=1
/transl_table=11
/product="urea amidolyase"
/protein_id="YP_187972.1"
/db_xref="GI:57866306"
/db_xref="GeneID:3240920"
/translation="MSIIIENSGLFSSFQDFGRKGYEHEGVIPSGALDELAHEIANRL
VANDKNEATLEMTQKMATIRFTEPALIALTGGNFKAETEHMKIYPNKLYLINEGETLK
FNETSRTSRVYLAVGGGFKLEKWLHSASTDFNVEIGGFEGRKLKKGDEIELKHHYSQR
HLKLFENLSDKRTTDWGIDGYALSFNYVSDVFHVIKNKGTEDFKKEATRRFTTAEYSV
SSKTNRVGMVLDGPQIKAYYDDMPAHQSVKRGTIQVKRDGTPIVLLNDHYTLGSYPQI
GTIASYHLTKLAQKPQGSKLKFQFIDIETAEKNLIKYSNWLNQLFHGIEHRMQLEMLK
"
misc_feature 374380..375351
/locus_tag="SERP0378"
/note="Allophanate hydrolase subunit 2 [Amino acid
transport and metabolism]; Region: DUR1; COG1984"
/db_xref="CDD:224895"
gene 375930..377870
/locus_tag="SERP0379"
/db_xref="GeneID:3240921"
CDS 375930..377870
/locus_tag="SERP0379"
/note="identified by match to protein family HMM PF00884"
/codon_start=1
/transl_table=11
/product="sulfatase"
/protein_id="YP_187973.1"
/db_xref="GI:57866307"
/db_xref="GeneID:3240921"
/translation="MSLPKKKIGIFAFFLLTVFTITLKTYFSYYVDFSLGVKGLVQNL
ILLMNPYSLIALVLSVFLFFKGKKAFWFIFIGGFLLTFLLYANVVYFRFFSDFLTFST
LNQAGNVESMGGAVSASFKWYDFVYFIDTIIYLAILIFKRKWLDNRAFSKKFVPVVMA
TSVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALAS
EDDLTKVLNYTKQKRTEPNPEYYGAAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLN
KLSSGNQDFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAYSLKGDNTYQSLPAI
LDQKQGYTSNVMHGDYKTFWNRDQVYKHFGIDNFYDATYYDMSDDNIVNLGLKDKPFF
KASADYQSKMKKPFYSHLITLTNHYPFTLDEEDASIDKPNTGDSTVDGYIQTAHYLDQ
ALEEYITDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGF
WLKVPGKSGGVNKEYAGQMDVMPTLLHLVGIDSKNYLMFGSDMFSKQHNNVVPFRNGD
FITEDYKYVNGKIYSNKDNELLTEKPKDFDKNKKQVEKDLEMSDSVLNGDLFRFYKNP
DFKKVNPGKYEYKSGPKGNEKK"
misc_feature 375942..377834
/locus_tag="SERP0379"
/note="Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane]; Region: MdoB; COG1368"
/db_xref="CDD:224287"
misc_feature 376668..377591
/locus_tag="SERP0379"
/note="Sulfatase; Region: Sulfatase; pfam00884"
/db_xref="CDD:216172"
repeat_region 378439..378476
/note="IR-right"
/rpt_type=inverted
gene complement(378546..379559)
/locus_tag="SERP0380"
/db_xref="GeneID:3240922"
CDS complement(378546..379559)
/locus_tag="SERP0380"
/note="RTD; identified by match to protein family HMM
PF02371"
/codon_start=1
/transl_table=11
/product="ISSep1-like transposase"
/protein_id="YP_187974.1"
/db_xref="GI:57866308"
/db_xref="GeneID:3240922"
/translation="MERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLG
PTLKQTDSLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPGLERLFSSR
YSIIALNIAEIFTHPDMVLDIDKEVLITHIFNSTDKGMSMDKATKYALQLRVIAQESY
PNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLST
AMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIM
NIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQM
SPH"
misc_feature complement(378720..>379070)
/locus_tag="SERP0380"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:33349"
misc_feature complement(<378744..378947)
/locus_tag="SERP0380"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:202223"
gene complement(379917..380024)
/locus_tag="SERP0381"
/db_xref="GeneID:3241737"
CDS complement(379917..380024)
/locus_tag="SERP0381"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187975.1"
/db_xref="GI:57866309"
/db_xref="GeneID:3241737"
/translation="MITKDINIKNILRLAMKKSMTIDFFIAIFYSYREK"
gene complement(380323..381138)
/locus_tag="SERP0382"
/db_xref="GeneID:3241738"
CDS complement(380323..381138)
/locus_tag="SERP0382"
/note="identified by match to protein family HMM PF02535"
/codon_start=1
/transl_table=11
/product="gufA protein"
/protein_id="YP_187976.1"
/db_xref="GI:57866310"
/db_xref="GeneID:3241738"
/translation="MSDLFQNAPPYIQALIAGIITWLLTALGAAAVFIFKKVNDKVLN
SMQGFAAGIMIAASFWSLLQPAIESSENSAMPWLPAAIGFILGGVFIRVLDYIIPHIH
QNAQDKNQQQEGVPTSLGKNALLVLAITLHNIPEGLSIGVAFGGVVSGNSHATFLGAI
GLAIGIGIQNIPEGAALSMPIRAAGATRWKAFNYGQASAIVEPIFATIGAAAILVVNP
ILPYALAFAAGAMIFVVVEELIPDSQSSNNTDLATLSLMIGFTIMMILDVALG"
misc_feature complement(380326..381105)
/locus_tag="SERP0382"
/note="Predicted divalent heavy-metal cations transporter
[Inorganic ion transport and metabolism]; Region: COG0428"
/db_xref="CDD:223505"
misc_feature complement(380338..381096)
/locus_tag="SERP0382"
/note="ZIP Zinc transporter; Region: Zip; pfam02535"
/db_xref="CDD:217089"
gene 381266..383149
/locus_tag="SERP0383"
/db_xref="GeneID:3241746"
CDS 381266..383149
/locus_tag="SERP0383"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187977.1"
/db_xref="GI:57866318"
/db_xref="GeneID:3241746"
/translation="MEAYKIEHLNKSYADKEIFNDLNLSISEHERIGLVGINGTGKST
LLKVIGGLDEDFTADITHPNQYRIRYSSQKQDLNGHMTVFEAVLSSDTPTLRIIKKYE
EAVNRYALDQSDSNFNKMMEAQEEMDQKDAWDYNAEIKTILSKLGIHDTTKKIVELSG
GQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESIRWLINYVKQYPHTVLFVTHDRYFLN
EVSTRIIELDRGKLKTYPGNYEDYIVMRAENELVEQKQQEKQKALYKQELAWMRAGAK
ARTTKQQARINRFNQLESDVKTQHTQDKGELNLAYSRLGKQVYELKNLSKSINNKVLF
EDVTEIIQSGRRIGIVGPNGAGKTTLLNILSNEDQDYEGELKIGQTVKVAYFKQTEKT
LDRDIRVIDYLREESEMAKEKDGTSISVTQLLERFLFPSATHGKKVYKLSGGEQKRLY
LLRLLVHKPNVLLLDEPTNDLDTETLTILEDYIDDFGGSVITVSHDRYFLNKVVQEYW
FIHDGKIEKIIGSFEDYESFKKEHERQAMLSKQTEQQNKHKHQPKKKTGLSYKEKLEY
ETIMTRIEMTETRLEDLEQEMINASDNYARIKELNEEKEQLEATYEADITRWSELEEI
KEQ"
misc_feature 381266..382858
/locus_tag="SERP0383"
/note="ATPase components of ABC transporters with
duplicated ATPase domains [General function prediction
only]; Region: Uup; COG0488"
/db_xref="CDD:223562"
misc_feature 381278..381958
/locus_tag="SERP0383"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 381371..381394
/locus_tag="SERP0383"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(381380..381385,381389..381397,381809..381814,
381899..381901)
/locus_tag="SERP0383"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 381509..381517
/locus_tag="SERP0383"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 381737..381766
/locus_tag="SERP0383"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 381797..381814
/locus_tag="SERP0383"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 381821..381832
/locus_tag="SERP0383"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 381887..381907
/locus_tag="SERP0383"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
misc_feature 381938..382144
/locus_tag="SERP0383"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:221805"
misc_feature 382223..382807
/locus_tag="SERP0383"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
gene 383163..384941
/gene="recQ-1"
/locus_tag="SERP0384"
/db_xref="GeneID:3241747"
CDS 383163..384941
/gene="recQ-1"
/locus_tag="SERP0384"
/EC_number="3.6.1.-"
/note="identified by similarity to OMNI:NTL01LL1848; match
to protein family HMM PF00270; match to protein family HMM
PF00271; match to protein family HMM PF00570; match to
protein family HMM TIGR00614; match to protein family HMM
TIGR01389"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecQ"
/protein_id="YP_187978.1"
/db_xref="GI:57866319"
/db_xref="GeneID:3241747"
/translation="MQETLSHYFGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSIC
YQVPGLMQGGTTIVISPLISLMKDQVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRG
AIQFLYVAPERFENTFFLNLLRKIEIPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTL
PQNFTIVALTATATAEVQQDIMSKLSIGQNDVVKTSTKRRNLIFKVNPTYQRQKFVVD
YVANHEGQAGIIYCSTRKQVEELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRV
EVVIATNAFGMGIDKSNVRYVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDK
GLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNENLEECNQCS
NCIQENKTYDMTREAKMIISCIARMKQQENYSVIIQVLRGEVTDYIKHHHYNELTTHG
LMKNYTTSELSHLIDELRFKGYLNENDEILMCDTSVKQLLNNHTKVYTTPFKQKTKEK
VFINTVEGVDRALYRELVDVRKQLSDKLGIAPVSIFSDYTLEEFAKRKPESKQEMIAI
DGVGSYKLKHYCPKFIETIQSYKTRI"
misc_feature 383163..384926
/gene="recQ-1"
/locus_tag="SERP0384"
/note="ATP-dependent DNA helicase RecQ; Region: recQ;
TIGR01389"
/db_xref="CDD:130456"
misc_feature 383247..383678
/gene="recQ-1"
/locus_tag="SERP0384"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature 383274..383288
/gene="recQ-1"
/locus_tag="SERP0384"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature 383562..383573
/gene="recQ-1"
/locus_tag="SERP0384"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature 383826..384146
/gene="recQ-1"
/locus_tag="SERP0384"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature order(383859..383870,383928..383933,384006..384014)
/gene="recQ-1"
/locus_tag="SERP0384"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature order(384030..384032,384093..384095,384105..384107,
384114..384116)
/gene="recQ-1"
/locus_tag="SERP0384"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
misc_feature 384366..384632
/gene="recQ-1"
/locus_tag="SERP0384"
/note="This DNA-binding domain is found in the RecQ
helicase among others and has a helix-turn-helix
structure; Region: RQC; smart00956"
/db_xref="CDD:214936"
misc_feature 384714..384917
/gene="recQ-1"
/locus_tag="SERP0384"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
gene 385141..386115
/locus_tag="SERP0385"
/db_xref="GeneID:3241319"
CDS 385141..386115
/locus_tag="SERP0385"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_187979.1"
/db_xref="GI:57866320"
/db_xref="GeneID:3241319"
/translation="MIKFKNVTKRYANNIAVDNVSFNIKEGEFFVLIGPSGCGKTTTL
KMINRLIPLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQM
KKWKDNDIDLRVDELLTMVGLNPEQFKNRKPDELSGGQRQRVGVVRALAADPPVIIMD
EPFSALDPISREKLQDDLIHLQTQIKKTIVFVTHDIQEAMKLGDRICLLNEGRVEQID
TPDSFRTRPKSDFVKQFMGSHLDTTHNIVNQVKIKDLGINRSVDDNASVIHYPEVDAE
LYLNNIYEDLSHYDAVVVNDKEQHRRYLLNREDVFTYLSLNKEEATHE"
misc_feature 385141..385860
/locus_tag="SERP0385"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:224051"
misc_feature 385144..385854
/locus_tag="SERP0385"
/note="ATP-binding cassette domain of the osmoprotectant
transporter; Region: ABC_OpuCA_Osmoprotection; cd03295"
/db_xref="CDD:213262"
misc_feature 385240..385263
/locus_tag="SERP0385"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213262"
misc_feature order(385249..385254,385258..385266,385384..385386,
385618..385623,385720..385722)
/locus_tag="SERP0385"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213262"
misc_feature 385375..385386
/locus_tag="SERP0385"
/note="Q-loop/lid; other site"
/db_xref="CDD:213262"
misc_feature 385546..385575
/locus_tag="SERP0385"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213262"
misc_feature 385606..385623
/locus_tag="SERP0385"
/note="Walker B; other site"
/db_xref="CDD:213262"
misc_feature 385630..385641
/locus_tag="SERP0385"
/note="D-loop; other site"
/db_xref="CDD:213262"
misc_feature 385708..385728
/locus_tag="SERP0385"
/note="H-loop/switch region; other site"
/db_xref="CDD:213262"
gene 386108..387622
/locus_tag="SERP0386"
/db_xref="GeneID:3241320"
CDS 386108..387622
/locus_tag="SERP0386"
/note="identified by match to protein family HMM PF00528;
match to protein family HMM PF04069"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_187980.1"
/db_xref="GI:57866321"
/db_xref="GeneID:3241320"
/translation="MNEFFATLSDRKGQLFSTIIEHIQLSFIALFIATLIAVPIAILL
TKTKKLSEIVMNIAAVLQTIPSLALLGLMIPIFGIGRLPAIIALVVYALLPILRNTYT
GIKEVDPSLIEAAKGIGMKPLRRLTKVELPIAMPVIMAGIRTAMVLIIGTATLAALIG
AGGLGDLILLGIDRNNSALILIGAIPAALLAIIFDFILRYMERLSYKKLLISLGTIVI
VIIIAIAIPMAAQKGDKITFAGKLGSEPSIITNMYKILIEEDTDDTVEVKDGMGKTSF
LFNALKSDEIDGYLEFTGTVLGELTKEDLKSKKENDVYQQAKSSLEKKYDMTMLKPMK
YNNTYALAVKRDFAKKYQIKTIGDLRKVEDKLKPGFTLEFNDRPDGYKAVKKTYHLNL
SNVKTMEPKLRYTAVKKGDINLIDAYSTDAELKQYNMVVLKDDQHVFPPYQGAPLFKE
KYLKDHPEVKKPLNKLANRITDEEMQEMNYKVTVKKEDPYKVAREYLEKEKLIK"
misc_feature <386144..>386545
/locus_tag="SERP0386"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:223673"
misc_feature 386162..>386548
/locus_tag="SERP0386"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(386210..386215,386222..386227,386240..386242,
386267..386278,386282..386311,386318..386323,
386327..386329,386375..386380,386384..386386,
386390..386392,386399..386404,386408..386410,
386420..386425,386432..386434,386483..386485,
386525..386530,386537..386539)
/locus_tag="SERP0386"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature 386285..386329
/locus_tag="SERP0386"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(386435..386473,386489..386494,386504..386506)
/locus_tag="SERP0386"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
misc_feature 386792..387604
/locus_tag="SERP0386"
/note="Periplasmic glycine betaine/choline-binding
(lipo)protein of an ABC-type transport system
(osmoprotectant binding protein) [Cell envelope
biogenesis, outer membrane]; Region: OpuBC; COG1732"
/db_xref="CDD:224646"
misc_feature <386936..387604
/locus_tag="SERP0386"
/note="ABC-type proline/glycine betaine transport systems,
periplasmic components [Amino acid transport and
metabolism]; Region: ProX; cl17891"
/db_xref="CDD:248445"
gene 387825..388880
/gene="hisC"
/locus_tag="SERP0387"
/db_xref="GeneID:3241321"
CDS 387825..388880
/gene="hisC"
/locus_tag="SERP0387"
/EC_number="2.6.1.9"
/note="catalyzes the formation of L-histidinol phosphate
from imidazole-acetol phosphate and glutamate in histidine
biosynthesis"
/codon_start=1
/transl_table=11
/product="histidinol-phosphate aminotransferase"
/protein_id="YP_187981.1"
/db_xref="GI:57866322"
/db_xref="GeneID:3241321"
/translation="MKKQLDQLTAYTPGLSPESLKKQYGIKGELHKLASNENVYGPSP
KVKTAIQSHLDELYYYPESGSPKLREAISQQLNVDASRILFGAGLDEVILMISRAVLS
PGDKIITSESTFGQYYHNAIVESADVIQVPLKDGGFDLDGMLQQIDNKTSLIWLCNPN
NPTGTYFSHDELFNFLKRVPSDIPVLIDEAYVEFVTADDFPDTLKLQEDFDNAFLLRT
FSKAYGLAGLRVGYVIASEDAIEKWNIIRPPFNVTRISEYAAIAALEDQEYLKEVTQK
NSFERDKFYQIPQSQHFLPSQANFVFVKTSRSQALYDALLNVGCITRLFPNGVRITIG
LPEQNNKMIEVLKHFEY"
misc_feature 387825..388871
/gene="hisC"
/locus_tag="SERP0387"
/note="histidinol-phosphate aminotransferase; Provisional;
Region: PRK03158"
/db_xref="CDD:235106"
misc_feature 387918..388865
/gene="hisC"
/locus_tag="SERP0387"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature order(388086..388094,388164..388166,388305..388307,
388395..388397,388476..388478,388482..388487,
388509..388511)
/gene="hisC"
/locus_tag="SERP0387"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature order(388095..388097,388194..388196,388374..388376,
388503..388511,388590..388592,388599..388601)
/gene="hisC"
/locus_tag="SERP0387"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature 388485..388487
/gene="hisC"
/locus_tag="SERP0387"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 389003..389542
/locus_tag="SERP0388"
/db_xref="GeneID:3241322"
CDS 389003..389542
/locus_tag="SERP0388"
/note="identified by similarity to OMNI:NTL01SA0701"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187982.1"
/db_xref="GI:57866323"
/db_xref="GeneID:3241322"
/translation="MTRQRIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLK
HMIPEHEGLVMDILKEPGFFRNLDVMPHAQEVVKQLNEHYDIYIATAAMDVPTSFHDK
YEWLLEYFPFLDPQHFVFCGRKNIILADYLIDDNPKQLEIFEGKSIMFTASHNVNEHR
FERVSGWRDVKNYFNSIEK"
misc_feature 389003..389539
/locus_tag="SERP0388"
/note="5'(3')-deoxyribonucleotidase [Nucleotide transport
and metabolism]; Region: COG4502"
/db_xref="CDD:226895"
gene complement(389609..392218)
/locus_tag="SERP0389"
/db_xref="GeneID:3241323"
CDS complement(389609..392218)
/locus_tag="SERP0389"
/EC_number="1.1.1.1"
/note="identified by similarity to SP:P17547; match to
protein family HMM PF00171; match to protein family HMM
PF00465"
/codon_start=1
/transl_table=11
/product="bifunctional acetaldehyde-CoA/alcohol
dehydrogenase"
/protein_id="YP_187983.1"
/db_xref="GI:57866324"
/db_xref="GeneID:3241323"
/translation="MLSVTKKNTYESNKDEVTQMIDSLAEKGQEALKELSKKSQHEIN
DIVHQMSMAAVDQHMHLAKLAYDETGRGIYEDKAIKNLYASEYIWNSIKDNKTVGIIG
EDKQKGLTYVAEPIGVICGVTPTTNPTSTTIFKAMIAIKTGNPIIFAFHPSAQQSSKY
AAKVILEAATKAGAPKDCIQWIEVPSIEATKQLMNHKDIALVLATGGSGMVKSAYSTG
KPALGVGPGNVPTYIEKTAHIKRAVNDIIGSKTFDNGMICASEQVMVVDKEVYTDVVK
EFKLHQTYFVNKNELQQLEDAIMNEDKTAVKPDIVGKSAVDIAKLSGISVPEKTKLLV
AEIDGIGKDYPLSREKLSPVLAMVTAKSTGHALQICEDILKFGGLGHTAVIHTEDSQL
QQKFGLKMKACRVLVNTPSAVGGIGNMYNELIPSLTLGCGSYGRNSISHNVSAVDLLN
IKTIAKRRNNMQWFKLPPKVYFEENSVMYLTEMDNVERVMIVCDPGMVNIGYTDIVEQ
VLRRRENQPQIKVFNEVEPNPSTHTVYKGLEMFINFQPNTIIALGGGSAMDAAKAIWM
FFEHPETSFFGAKQKFLDIRKRTYKITKPKNAKFICIPTTSGTGSEVTPFAVITDSET
HVKYPLADYALTPDIAIVDPQFVLSVPKDVAADTGMDVLTHAIESYVSVMASDYTRGL
SLQAIKLTFDYLKSSVQENDKHSREKMHNASTMAGMAFANAFLGISHSIAHKIGGEYG
IPHGRTNAILLPHVIRYNAKDPQKHALFPKYDFFRADTDYADIAKFLGLKGNTTEELV
DALANAVYDLGCSVGIDMNLKSQGVTEELLHSTIDRMAELAFEDQCTTANPKEPLISE
LKGIIETAYDYER"
misc_feature complement(389624..392188)
/locus_tag="SERP0389"
/note="bifunctional acetaldehyde-CoA/alcohol
dehydrogenase; Provisional; Region: PRK13805"
/db_xref="CDD:237515"
misc_feature complement(390848..392158)
/locus_tag="SERP0389"
/note="Coenzyme A acylating aldehyde dehydrogenase (ACDH),
ALDH family 20-like; Region: ALDH_F20_ACDH; cd07122"
/db_xref="CDD:143440"
misc_feature complement(391445..391447)
/locus_tag="SERP0389"
/note="putative catalytic cysteine [active]"
/db_xref="CDD:143440"
misc_feature complement(389633..390820)
/locus_tag="SERP0389"
/note="C-terminal alcohol dehydrogenase domain of the
acetaldehyde dehydrogenase-alcohol dehydrogenase
bifunctional two-domain protein (AAD); Region: AAD_C;
cd08178"
/db_xref="CDD:173937"
misc_feature complement(order(389990..389992,390020..390022,
390032..390034,390224..390226,390236..390238,
390257..390259,390281..390283,390335..390340,
390395..390397,390401..390406,390533..390535,
390542..390544,390551..390559,390737..390739))
/locus_tag="SERP0389"
/note="putative active site [active]"
/db_xref="CDD:173937"
misc_feature complement(order(389990..389992,390032..390034,
390224..390226,390236..390238))
/locus_tag="SERP0389"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173937"
gene complement(392617..393540)
/gene="bmrU"
/locus_tag="SERP0390"
/db_xref="GeneID:3241324"
CDS complement(392617..393540)
/gene="bmrU"
/locus_tag="SERP0390"
/note="identified by similarity to EGAD:20823; match to
protein family HMM TIGR00147"
/codon_start=1
/transl_table=11
/product="bmrU protein"
/protein_id="YP_187984.1"
/db_xref="GI:57866325"
/db_xref="GeneID:3241324"
/translation="MKQPYNHGVLFYHEHSGLKDIHNGIGEVAKSLSSMCKHLSLQLS
ENKGDIIKYCKSIKNENYSSDVDVLFILGGDGTLNELVNGVMQYQLNLPIGVIPGGTF
NDFTKTLQLHPNFKTASEQLLTSHAESYDVLKVNDLYVLNFVGLGLIVQNAENVQDGS
KDIFGKFSYIGSTVKTLLNPVKFDFSLTVDGETKEGNTSMMLIANGPNIGGGQIPLTD
LSPQDGRANTFVFNDQTLNILNDILKKRDSMNWNEITQGIDHISGKHITLSTNPSMKV
DIDGEINLETPIEIQVLPKAIQLLTATEQNN"
misc_feature complement(392638..393522)
/gene="bmrU"
/locus_tag="SERP0390"
/note="Sphingosine kinase and enzymes related to
eukaryotic diacylglycerol kinase [Lipid metabolism /
General function prediction only]; Region: LCB5; COG1597"
/db_xref="CDD:224513"
misc_feature complement(393133..393522)
/gene="bmrU"
/locus_tag="SERP0390"
/note="Diacylglycerol kinase catalytic domain; Region:
DAGK_cat; pfam00781"
/db_xref="CDD:216116"
gene complement(393750..393911)
/locus_tag="SERP0391"
/note="IS1272, transposase, degenerate; this gene contains
a frame shift which is not the result of sequencing error;
identified by similarity to GP:8918792"
/pseudo
/db_xref="GeneID:3241325"
gene complement(394195..395700)
/locus_tag="SERP0392"
/db_xref="GeneID:3241326"
CDS complement(394195..395700)
/locus_tag="SERP0392"
/note="identified by similarity to EGAD:9223; match to
protein family HMM PF00854; match to protein family HMM
TIGR00924"
/codon_start=1
/transl_table=11
/product="di-tripeptide transporter"
/protein_id="YP_187985.1"
/db_xref="GI:57866326"
/db_xref="GeneID:3241326"
/translation="MTSNKSHEKAVQEIPQHGFFGHPKGLGVLFFVEFWERFSYYGMR
AMLIFYMYFALQENGLGMDKTTAMSIMSVYGSLIYMSSIPGGWIADRITGTRGATLIG
AILIIIGHICLSLPFAMVGLFTSMFFIIVGSGLMKPNISNIVGRLYPENDVRMDAGFV
IFYMSVNMGALVSPIILQHYIDIRNFHGGFLIAAIGMALGLVWYLLFNRKTLGSIGMK
PTNPLSSSEKKKYGTIIGIVVIAIVLILMIAYFTHTLSFNLISNTVLILGIALPIIYF
TTMIRSKEVTDTERSRVKAFIPLFILGMLFWSIQEQGSNVLNIYGIENSDMKLNLFGW
KTHFGEAIFQTINPLFILLFAPVVTLLWQKLGKKQPSLPIKFAIGTILAGASYILMGA
IGHIYGDTQFSVNWVILSYVICVIGELCLSPTGSSAAVKLAPKAFNAQMMSLWLLTNA
SAQAINGTLVKLIKPLGQTNYFIFLGVVATVITLIILAFIPKISKAMKGIR"
misc_feature complement(394198..395685)
/locus_tag="SERP0392"
/note="Dipeptide/tripeptide permease [Amino acid transport
and metabolism]; Region: PTR2; COG3104"
/db_xref="CDD:225646"
misc_feature complement(<395056..395625)
/locus_tag="SERP0392"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(395191..395193,395209..395214,
395221..395226,395266..395268,395275..395280,
395287..395292,395299..395304,395443..395448,
395452..395457,395467..395469,395476..395481,
395488..395490,395557..395562,395566..395574,
395581..395583))
/locus_tag="SERP0392"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(394228..>394815)
/locus_tag="SERP0392"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(395687..395782)
/locus_tag="SERP0393"
/db_xref="GeneID:3241327"
CDS complement(395687..395782)
/locus_tag="SERP0393"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187986.1"
/db_xref="GI:57866327"
/db_xref="GeneID:3241327"
/translation="MKFFYHNSKITLKQFNKVIWARKVGMIYDFK"
gene complement(395984..396484)
/locus_tag="SERP0394"
/db_xref="GeneID:3241328"
CDS complement(395984..396484)
/locus_tag="SERP0394"
/note="NADPH-dependent; catalyzes the reduction of
7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in
queuosine biosynthesis"
/codon_start=1
/transl_table=11
/product="7-cyano-7-deazaguanine reductase"
/protein_id="YP_187987.1"
/db_xref="GI:57866328"
/db_xref="GeneID:3241328"
/translation="MTQGRQKDELKDITLLGNQNNTYEFDYRPEVLETFDNKHQGRDY
FVKFNCPEFTSLCPITGQPDFATIYISYIPNIKMVESKSLKLYLFSFRNHGDFHEDCM
NIIMNDLINLMDPHYIEVWGKFTPRGGISIDPYTNYGRPDTKYEKMAEHRLMNHDMYP
EKIDNR"
misc_feature complement(396026..396472)
/locus_tag="SERP0394"
/note="Enzyme related to GTP cyclohydrolase I [General
function prediction only]; Region: COG0780"
/db_xref="CDD:223851"
gene complement(396498..397373)
/locus_tag="SERP0395"
/db_xref="GeneID:3241329"
CDS complement(396498..397373)
/locus_tag="SERP0395"
/note="identified by match to protein family HMM PF00892"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187988.1"
/db_xref="GI:57866329"
/db_xref="GeneID:3241329"
/translation="MILNSKVKGIIAILISAVGFSFMSVFFRLAGDLPVFQKSLARNF
VAMFIPLFFIYKYRQPMFGKLSSQPLLISRSTLGLIGVLLNIYAIDHMVLSDADTLMK
LNPFWTIVLSLIFLHEKVRKYQITAMIIAIIGMLLIVKPEFSSSVIPSIAGLLSGIFA
ASAYTCVRALSTREKPYTIVFYFSLFSVVVLIPFSIFTYTPMTTIQILFLLGAGLSAA
VGQIGITLAYSFAPAKDISIFTYASIIFTALFGFILFGESPDMFATVGYIVIIGASYY
MFDKARRETTINQNN"
misc_feature complement(396522..397355)
/locus_tag="SERP0395"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
gene 398129..398527
/gene="nrdI"
/locus_tag="SERP0396"
/db_xref="GeneID:3241330"
CDS 398129..398527
/gene="nrdI"
/locus_tag="SERP0396"
/note="in Salmonella NrdI has a stimulatory effect on the
ribonucleotide reductase activity of NrdH with NrdEF"
/codon_start=1
/transl_table=11
/product="ribonucleotide reductase stimulatory protein"
/protein_id="YP_187989.1"
/db_xref="GI:57866330"
/db_xref="GeneID:3241330"
/translation="MKVVYYSFSGNVRRFISRAGIKDTFEITQDNCNESVNEPYILVT
GTIGFGEVPQPVQSFLNVNHTQLQAVAASGNRNWGQNFAKAGHTISEEYKVPLMMKFE
VQGTNKDIIEFKDKVGNFNENHGRKEIQSY"
misc_feature 398129..398506
/gene="nrdI"
/locus_tag="SERP0396"
/note="ribonucleotide reductase stimulatory protein;
Reviewed; Region: nrdI; PRK03600"
/db_xref="CDD:179603"
gene 398490..400595
/gene="nrdE"
/locus_tag="SERP0397"
/db_xref="GeneID:3241159"
CDS 398490..400595
/gene="nrdE"
/locus_tag="SERP0397"
/EC_number="1.17.4.1"
/note="Catalyzes the rate-limiting step in dNTP synthesis"
/codon_start=1
/transl_table=11
/product="ribonucleotide-diphosphate reductase subunit
alpha"
/protein_id="YP_187990.1"
/db_xref="GI:57866331"
/db_xref="GeneID:3241159"
/translation="MKTMEEKKYNHIELNNEVTKRKDNGFFDLEKDQEALKVYLEEIH
DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELIEITEYAKSIHFQFASYMSASKFY
KDYALKTNDKTKFLEDYNQHVAIVALYLANGNVKQAKQFISAMVEQRYQPATPTFLNA
GRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIK
GVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRL
STISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDDIDLEKYYDDMVANPNID
KKKKDAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQET
SVINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVFTGMDALTVVSDEANIQNAP
GVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMIMNYYSIERSMEIA
KERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGIDIPTSNDWKELQNKV
EQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPETM
WYYKSAFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKS
LYYTRNKLLSVEECTSCAI"
misc_feature 398496..400592
/gene="nrdE"
/locus_tag="SERP0397"
/note="ribonucleotide-diphosphate reductase subunit alpha;
Validated; Region: PRK07632"
/db_xref="CDD:236069"
misc_feature 398520..398759
/gene="nrdE"
/locus_tag="SERP0397"
/note="Ribonucleotide reductase N-terminal; Region: RNR_N;
pfam08343"
/db_xref="CDD:192008"
misc_feature 398850..400550
/gene="nrdE"
/locus_tag="SERP0397"
/note="Class I ribonucleotide reductase; Region: RNR_I;
cd01679"
/db_xref="CDD:153088"
misc_feature order(398949..398954,398997..399002,399084..399086,
399630..399632,399636..399638,399642..399644,
399723..399725,400227..400244)
/gene="nrdE"
/locus_tag="SERP0397"
/note="active site"
/db_xref="CDD:153088"
misc_feature order(398988..398990,399027..399032,399039..399041,
399048..399053,399060..399065,399072..399074,
399117..399119,399153..399155,399165..399170,
399174..399179,399186..399191,399198..399212)
/gene="nrdE"
/locus_tag="SERP0397"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153088"
misc_feature order(399000..399002,399630..399632,399636..399638,
399642..399644,399717..399719,400539..400544)
/gene="nrdE"
/locus_tag="SERP0397"
/note="catalytic residues [active]"
/db_xref="CDD:153088"
misc_feature order(399021..399029,399036..399038,399072..399074,
399111..399113,399153..399155,399168..399170)
/gene="nrdE"
/locus_tag="SERP0397"
/note="effector binding site; other site"
/db_xref="CDD:153088"
misc_feature order(399348..399350,399357..399362,399366..399371,
399510..399512,399522..399524,399543..399545,
400479..400487,400491..400496,400506..400511,
400515..400520)
/gene="nrdE"
/locus_tag="SERP0397"
/note="R2 peptide binding site; other site"
/db_xref="CDD:153088"
gene 400714..401682
/gene="nrdF"
/locus_tag="SERP0398"
/db_xref="GeneID:3241169"
CDS 400714..401682
/gene="nrdF"
/locus_tag="SERP0398"
/EC_number="1.17.4.1"
/note="B2 or R2 protein; type 1b enzyme; catalyzes the
rate-limiting step in dNTP synthesis; converts nucleotides
to deoxynucleotides; forms a homodimer and then a
multimeric complex with NrdE"
/codon_start=1
/transl_table=11
/product="ribonucleotide-diphosphate reductase subunit
beta"
/protein_id="YP_187991.1"
/db_xref="GI:57866341"
/db_xref="GeneID:3241169"
/translation="MKAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLTD
SEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHI
FTTLLPSSETNYLLDTWVIEEPHLKYKSDKIVENYHKLWGKEASIYDQYIARVSSVFL
ETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEK
QKADQEMYKLLNELYDNEVSYTHLLYDDIGLAEDVLNYVRYNGNKALSNLGFEPYFEE
REFNPIIENALDTSTKNHDFFSVKGDGYTLALNVEPLRDEDFVFDN"
misc_feature 400714..401673
/gene="nrdF"
/locus_tag="SERP0398"
/note="ribonucleotide-diphosphate reductase subunit beta;
Provisional; Region: nrdF2; PRK13966"
/db_xref="CDD:140022"
misc_feature 400723..401574
/gene="nrdF"
/locus_tag="SERP0398"
/note="Ribonucleotide Reductase, R2/beta subunit,
ferritin-like diiron-binding domain; Region: RNRR2;
cd01049"
/db_xref="CDD:153108"
misc_feature order(400723..400725,400753..400755,400774..400776,
400969..400974,400981..400983,400990..400995,
401002..401004,401011..401013,401059..401064,
401074..401076)
/gene="nrdF"
/locus_tag="SERP0398"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153108"
misc_feature order(400786..400788,400894..400896,400987..400989,
400996..400998,401008..401010,401290..401295,
401305..401307)
/gene="nrdF"
/locus_tag="SERP0398"
/note="putative radical transfer pathway; other site"
/db_xref="CDD:153108"
misc_feature order(400894..400896,400987..400989,400996..400998,
401194..401196,401296..401298,401305..401307)
/gene="nrdF"
/locus_tag="SERP0398"
/note="diiron center [ion binding]; other site"
/db_xref="CDD:153108"
misc_feature 401008..401010
/gene="nrdF"
/locus_tag="SERP0398"
/note="tyrosyl radical; other site"
/db_xref="CDD:153108"
gene 401654..401920
/locus_tag="SERP0399"
/db_xref="GeneID:3241170"
CDS 401654..401920
/locus_tag="SERP0399"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187992.1"
/db_xref="GI:57866342"
/db_xref="GeneID:3241170"
/translation="MMKTLFLIINIVLLKRFLLKLVGISFFMKVGIIKYFDVLLLLDK
TFIKFPKNMKKLLKKENRVYNIDVNDNHYHYHYFRILTLYIFNI"
gene 401936..402910
/locus_tag="SERP0400"
/db_xref="GeneID:3242513"
CDS 401936..402910
/locus_tag="SERP0400"
/note="identified by match to protein family HMM PF01032"
/codon_start=1
/transl_table=11
/product="iron ABC transporter permease"
/protein_id="YP_187993.1"
/db_xref="GI:57866343"
/db_xref="GeneID:3242513"
/translation="MKFIFKGYTLFILLVILTIVSLFIGVSQLSLIDIFHLSDEQINI
LFSSRIPRTVSILLSGSSLALSGLIMQQMMQNKFVSPTTAGTMEWAKLGILMSLLFFP
NGPILIKLLFAVVLSIVGTFLFVQLINLIRVKDVIFVPLLGIMIGGILSSFTTFVALR
TNALQSIGNWLTGNFAVITSGRFEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGV
SYEKIIKIALFITATLTALVVVTVGTLPFLGLIVPNIISIYRGDHLKNALPHTLMLGA
IFVLIADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGRKNYANER"
misc_feature 402143..402874
/locus_tag="SERP0400"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(402146..402148,402158..402166,402524..402529,
402533..402541,402545..402550,402554..402571,
402575..402583,402704..402706,402725..402727)
/locus_tag="SERP0400"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(402161..402163,402167..402169,402182..402184,
402347..402349,402353..402358,402365..402370,
402377..402382,402389..402391,402398..402403,
402407..402409,402437..402442,402449..402451,
402674..402676,402830..402832,402839..402844,
402851..402853,402860..402865,402872..402874)
/locus_tag="SERP0400"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(402407..402409,402479..402481,402650..402652,
402662..402664,402794..402796,402821..402823)
/locus_tag="SERP0400"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 402900..403853
/locus_tag="SERP0401"
/db_xref="GeneID:3242514"
CDS 402900..403853
/locus_tag="SERP0401"
/note="identified by similarity to EGAD:10563; match to
protein family HMM PF01032"
/codon_start=1
/transl_table=11
/product="iron ABC transporter permease"
/protein_id="YP_187994.1"
/db_xref="GI:57866344"
/db_xref="GeneID:3242514"
/translation="MSANKKISILVVMAICMAIFYLLVGLDFDIFEYQFQSRFKKFIL
ILLVGASIGTSVVIFQSITTNRLLTPSIMGLDSVYLFVKVLPIFILGEQATVVTNIYL
NFLITLIAMVFFSLLLFQVIFKLGHFSVYFILLVGVILGTFFRSITSFLQLIMNPESF
LAVQNVMFASFEASNSKLVTVSGILLVILIIVTIILRPYLDVLLLGRAQAINLGVSYE
NMTRMFLILVALLVSISTALIGPVTFLGLLTVNLAHEFMKTYEHKFILPATILFSWIS
LFIAQWVVENLFEATTEFSLIVDLVGGSYFIYLLVKRRNAN"
misc_feature 403023..403829
/locus_tag="SERP0401"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(403077..403079,403089..403097,403479..403484,
403488..403496,403500..403505,403509..403526,
403530..403538,403662..403664,403683..403685)
/locus_tag="SERP0401"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(403092..403094,403098..403100,403113..403115,
403293..403295,403299..403304,403311..403316,
403323..403328,403335..403337,403344..403349,
403353..403355,403389..403394,403401..403403,
403629..403631,403785..403787,403794..403799,
403806..403808,403815..403820,403827..403829)
/locus_tag="SERP0401"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(403353..403355,403431..403433,403605..403607,
403617..403619,403752..403754,403776..403778)
/locus_tag="SERP0401"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 403850..404629
/locus_tag="SERP0402"
/db_xref="GeneID:3242515"
CDS 403850..404629
/locus_tag="SERP0402"
/note="identified by similarity to EGAD:37683; match to
protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="iron ABC transporter ATP-binding protein"
/protein_id="YP_187995.1"
/db_xref="GI:57866345"
/db_xref="GeneID:3242515"
/translation="MIQIRNLDKTIDNKPILKDISVDIKKGKLTSLIGPNGAGKSTLL
SAISRLFSYENGSILIEDKEISEYKTDDLAKKLSILKQSNHTDMNITIEQLVKFGRFP
YSKGRMKQEDYDKVEYALDLLQLNEIKHRNIKTLSGGQRQRAYIAMTIAQDTDYILLD
EPLNNLDMKHSVQIMQTLRDLCRQLNKTIIIVLHDINFASCYSDDIIALKQGELVKAD
DKDNVIQSDILKSLYEMEVRIEEIRGQRICLYYDETTFDSV"
misc_feature 403850..404602
/locus_tag="SERP0402"
/note="ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism];
Region: CeuD; COG4604"
/db_xref="CDD:226963"
misc_feature 403856..404500
/locus_tag="SERP0402"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature 403949..403972
/locus_tag="SERP0402"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature order(403958..403963,403967..403975,404093..404095,
404327..404332,404429..404431)
/locus_tag="SERP0402"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature 404084..404095
/locus_tag="SERP0402"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature 404255..404284
/locus_tag="SERP0402"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature 404315..404332
/locus_tag="SERP0402"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature 404339..404350
/locus_tag="SERP0402"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature 404417..404437
/locus_tag="SERP0402"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene 404708..405751
/locus_tag="SERP0403"
/db_xref="GeneID:3242516"
CDS 404708..405751
/locus_tag="SERP0403"
/note="identified by match to protein family HMM PF01497"
/codon_start=1
/transl_table=11
/product="transferrin receptor"
/protein_id="YP_187996.1"
/db_xref="GI:57866346"
/db_xref="GeneID:3242516"
/translation="MKKTVLFLLLSLVLVLTACSNSSNNNSTSKKKNSDSKETVTIKN
SFEASGKENNGSDKKKISNTVEVPKNPKNAVVLDYGALDVLKELGVADKVKGLPKGEN
NQSLPKFLDEFKDDKYINTGNLKEVNFDKVASAKPDVIFISGRTANQKNLDEFKKAAP
KAKVVYVGTSDDNLIKDMKKNTENLGKIYDKEDKAKKINKDLDRKISDMKDKTKDFNK
KVMYLLVNEGELSTFGPGGRFGGLVFDTLGFKPADKKVSKSPHGQNINNEYINKQNPD
VILAMDRGSVVGGKATTNQVLKNKVIKNVKAVKSNHIYELDPKLWYFSSGSSTTTIKQ
IDELNEVVEKVEK"
misc_feature 404891..405721
/locus_tag="SERP0403"
/note="Siderophore binding protein FatB. These proteins
have been shown to function as ABC-type initial receptors
in the siderophore-mediated iron uptake in some
eubacterial species. They belong to the TroA superfamily
of periplasmic metal binding proteins...; Region: FatB;
cd01140"
/db_xref="CDD:238560"
misc_feature order(404942..404947,405005..405007,405077..405079,
405134..405136,405140..405142,405398..405400,
405491..405493)
/locus_tag="SERP0403"
/note="putative ligand binding residues [chemical
binding]; other site"
/db_xref="CDD:238560"
gene complement(405902..406216)
/locus_tag="SERP0404"
/db_xref="GeneID:3242517"
CDS complement(405902..406216)
/locus_tag="SERP0404"
/note="identified by similarity to OMNI:SA0800; match to
protein family HMM PF05495"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187997.1"
/db_xref="GI:57866347"
/db_xref="GeneID:3242517"
/translation="MAKVYGSLIDNETRCTHYYSSLDVIAIKFKCCNKYYPCYKCHNE
HVSHTIERWAENEFDEKAIMCGVCKHEMRIRDYMMVEMCPRCKAHFNSRCKFHYHLYF
EV"
misc_feature complement(405908..406216)
/locus_tag="SERP0404"
/note="Zinc finger domain containing protein (CHY type)
[Function unknown]; Region: COG4357"
/db_xref="CDD:226801"
misc_feature complement(405947..406174)
/locus_tag="SERP0404"
/note="CHY zinc finger; Region: zf-CHY; pfam05495"
/db_xref="CDD:218608"
gene complement(406238..407158)
/gene="murB"
/locus_tag="SERP0405"
/db_xref="GeneID:3242398"
CDS complement(406238..407158)
/gene="murB"
/locus_tag="SERP0405"
/EC_number="1.1.1.158"
/note="catalyzes the reduction of UDP-N-acetylglucosamine
enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylenolpyruvoylglucosamine reductase"
/protein_id="YP_187998.1"
/db_xref="GI:57866357"
/db_xref="GeneID:3242398"
/translation="MNKNDILRGLESILPKDIIKVDEPLKRYTYTETGGEADFYLSPT
KNEEVQAIVKFAHENSIPVTYLGNGSNIIIREGGIRGIVLSLLSLNHIETSDDAIIAG
SGAAIIDVSNVARDHVLTGLEFACGIPGSIGGAVFMNAGAYGGEVKDCIDYALCVNEK
GDLLKLTTAELELDYRNSVVQQKHLVVLEAAFTLEPGKLDEIQAKMDDLTERRESKQP
LEFPSCGSVFQRPPGHFAGKLIQDSNLQGYRIGGVEVSTKHAGFMVNVDNGTATDYEA
LIHHVQKIVKEKFDVELNTEVRIIGDHPTD"
misc_feature complement(406241..407158)
/gene="murB"
/locus_tag="SERP0405"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional; Region: murB; PRK13906"
/db_xref="CDD:184386"
misc_feature complement(406658..407050)
/gene="murB"
/locus_tag="SERP0405"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
misc_feature complement(406256..406558)
/gene="murB"
/locus_tag="SERP0405"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase,
C-terminal domain; Region: MurB_C; pfam02873"
/db_xref="CDD:111727"
gene complement(407287..407814)
/locus_tag="SERP0406"
/db_xref="GeneID:3242399"
CDS complement(407287..407814)
/locus_tag="SERP0406"
/note="identified by similarity to OMNI:SA0802; match to
protein family HMM PF04229"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_187999.1"
/db_xref="GI:57866358"
/db_xref="GeneID:3242399"
/translation="MYANVQPFIKNESVKQFTYEYNKVKDVLFTILDSPIKYTQHIGG
TCHFNYQTEPILDILVGVNNLHDITSLDEKRLNYAGFYRLHHSYKKKVVMARFNNLSE
LKQEVRLHIIQMETSLFKQYQTVNHLLHNDKAIAEWFASKKNEIVQHAKKIREYESQK
QNLFEKLYKESNLLS"
misc_feature complement(407305..407757)
/locus_tag="SERP0406"
/note="Uncharacterized protein family (UPF0157); Region:
UPF0157; pfam04229"
/db_xref="CDD:217976"
gene 407931..408821
/locus_tag="SERP0407"
/db_xref="GeneID:3242400"
CDS 407931..408821
/locus_tag="SERP0407"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_188000.1"
/db_xref="GI:57866359"
/db_xref="GeneID:3242400"
/translation="MKKLLFIITVIILTIVVSACGNESKRDIKQFERQYKEIHQKQHS
VEKVMDKIPLKELDNLSKTDTTDKNKKEFRALQQDINNYLIPEFKKYKNSTQHLTADT
NEVKHLKEDYLKTVENKEKSIYDLKEFVDLCNRSIKDNEDILDYTKLFEKNRTEVESD
INKAQNKEDASQLKSKLEENNQQLKDTAKKYLNSSNNDSDSAKEAIKNHISPLIDKQI
TDINKTNISDNHVDNARKNAIEMYYSLQNYYDTRVDTIKTSEKLAQIDVDRLPKEGKD
ISEMDKSFKREFKKIKESVN"
gene 408970..409290
/locus_tag="SERP0408"
/db_xref="GeneID:3242331"
CDS 408970..409290
/locus_tag="SERP0408"
/note="identified by similarity to OMNI:SA0804"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188001.1"
/db_xref="GI:57866360"
/db_xref="GeneID:3242331"
/translation="MAIKLSSIDQFEQVLEENKYVFVLKHSETCPISANAYDQFNKFL
YERDIDGYYLIVQQERKLSDYIAEKTNVKHESPQAFYFVDGEMKWNADHDDINVSQLA
QAEE"
misc_feature 408976..409278
/locus_tag="SERP0408"
/note="bacillithiol system protein YtxJ; Region:
B_thiol_YtxJ; TIGR04019"
/db_xref="CDD:188534"
gene 409561..410691
/locus_tag="SERP0409"
/db_xref="GeneID:3242332"
CDS 409561..410691
/locus_tag="SERP0409"
/note="identified by similarity to OMNI:NTL01SA0718; match
to protein family HMM PF02595; match to protein family HMM
TIGR00045"
/codon_start=1
/transl_table=11
/product="glycerate kinase"
/protein_id="YP_188002.1"
/db_xref="GI:57866361"
/db_xref="GeneID:3242332"
/translation="MKVLVAMDEFNGIISSYQANRYVEEAVASQIEDADIVQVPLFNG
RHELLDSVFLWQSGNKYRVSAHDADMKETEAIYGQTDSGMTIIEGHLFLNGKKPIQHR
SSYGLGEVIKAALDNHTEHLVISLGGIGSFDGGAGMLQALGATFYDDEAQIVDMRKGA
YLIKYIRRIDLSGVHPQLTKVNIQLMSDFSSRLYGKKSEIMQTYESLDLSQNEAAEID
NLIWYFSELFKNELKIAMGPIERGGAGGGIAAVLNSLYQAEILTSHELVNQITHLENL
IQQADLIIFGEGLKEEDQILETTTIRIAELTQQYSKPAIAICATNDKFDLFESLNVTA
MFNTFIDMPDSYTDFKMGIQIRHYTVQALKLLKTQINLPLSS"
misc_feature 409561..410664
/locus_tag="SERP0409"
/note="Glycerate kinase [Carbohydrate transport and
metabolism]; Region: COG1929"
/db_xref="CDD:224840"
gene complement(410782..412020)
/gene="pepT"
/locus_tag="SERP0410"
/db_xref="GeneID:3242333"
CDS complement(410782..412020)
/gene="pepT"
/locus_tag="SERP0410"
/EC_number="3.4.11.4"
/note="catalyzes the release of the N-terminal amino acid
from a tripeptide"
/codon_start=1
/transl_table=11
/product="peptidase T"
/protein_id="YP_188003.1"
/db_xref="GI:57866362"
/db_xref="GeneID:3242333"
/translation="MKKQIIERLTRYVKIDTQSNPDSKTTPSTNKQWDLLNLLEEELQ
SLGLKTDMDEHGYLFATLESNINYNVPTVGFLAHVDTSPDFNASHVNPQIIEAYNGQP
IKLGESQRILDPDVFPELNKVVGHTLMVTDGTSLLGADDKAGVVEIMEGIKYLIDHPD
IKHGTIRVGFTPDEEIGRGPHQFDVSRFNADFAYTMDGSQLGELQFESFNAAEVTVTC
HGVNVHPGSAKNAMVNAISLGQQFNSLLPSHEVPERTEGYEGFYHLMNFTGNVEKATL
QYIIRDHDKEQFELRKKRMMEIRDDINVHYNHFPIKVDVHDQYFNMAEKIEPLKHIID
IPKRVFEALDIVPNTEPIRGGTDGSQLSFMGLPTPNIFTGCGNFHGPFEYASIDVMEK
AVHVVVGIAQEVANSHQSYK"
misc_feature complement(410803..412020)
/gene="pepT"
/locus_tag="SERP0410"
/note="Di- and tripeptidases [Amino acid transport and
metabolism]; Region: PepD; COG2195"
/db_xref="CDD:32378"
misc_feature complement(410815..412008)
/gene="pepT"
/locus_tag="SERP0410"
/note="M20 Peptidase T specifically cleaves tripeptides;
Region: M20_peptT; cd03892"
/db_xref="CDD:193512"
misc_feature complement(order(410884..410886,411430..411432,
411496..411501,411601..411603,411787..411789))
/gene="pepT"
/locus_tag="SERP0410"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193512"
misc_feature complement(order(410884..410886,410962..410964,
411208..411234,411238..411240,411253..411267,
411292..411294,411301..411303,411310..411315,
411319..411321,411325..411327,411331..411339,
411343..411351,411769..411771))
/gene="pepT"
/locus_tag="SERP0410"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193512"
gene complement(412041..412535)
/locus_tag="SERP0411"
/db_xref="GeneID:3242334"
CDS complement(412041..412535)
/locus_tag="SERP0411"
/note="identified by similarity to OMNI:SA0807"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188004.1"
/db_xref="GI:57866363"
/db_xref="GeneID:3242334"
/translation="MFIYLFHFIISFIATVLFSIIFNAPKKLLLACGFVGAVAWTIYQ
MTVGMDLGKVGASFLGSLILGLMSHTMSRRYKQPVIIFIVPGIIPLVPGGAAYEATRF
LVSNNYTNAVNTFLEVTLISGAIAFGILVSEIVYYIYSRIKQSYGKIKGKTYKKSYNM
NNRV"
misc_feature complement(412131..412520)
/locus_tag="SERP0411"
/note="Protein of unknown function (DUF3815); Region:
DUF3815; pfam12821"
/db_xref="CDD:193296"
gene complement(412551..413312)
/locus_tag="SERP0412"
/db_xref="GeneID:3242335"
CDS complement(412551..413312)
/locus_tag="SERP0412"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188005.1"
/db_xref="GI:57866364"
/db_xref="GeneID:3242335"
/translation="MSDSITIIDENKVIDVVLIAGRILLEAGAETYRIEDTMNRIAHS
YGLHDTYSFVTSTAIIFSLNDRTSTRLIRIRERTTDLEKIALTNSLSRKISSKQLTID
EAKSELLQLKRASLQYSFLTNLIAAFVACGFFLFMFGGVASDAWIACLAGGIAFLTFS
FVQKYIQIKFFSEFVASAVVISIAAIFTKLGIAKNQDIITIASVMPLVPGILITNAIR
DLLAGELLAGMSRGVEAALTAFAIGAGVAIVLLLL"
misc_feature complement(412578..413312)
/locus_tag="SERP0412"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2966"
/db_xref="CDD:225514"
misc_feature complement(412683..413255)
/locus_tag="SERP0412"
/note="Protein of unknown function (DUF1212); Region:
DUF1212; pfam06738"
/db_xref="CDD:219154"
gene complement(413507..414583)
/locus_tag="SERP0413"
/db_xref="GeneID:3242609"
CDS complement(413507..414583)
/locus_tag="SERP0413"
/note="identified by match to protein family HMM PF00990;
match to protein family HMM TIGR00254"
/codon_start=1
/transl_table=11
/product="GGDEF domain-containing protein"
/protein_id="YP_188006.1"
/db_xref="GI:57866373"
/db_xref="GeneID:3242609"
/translation="MEMFEAIIYNISVMVAGIYLFHRLQYSENKRMIFSKEYVTVLMT
FVSLLLAAYPIPFQNEYLVHLTFVPLLFLGRYTNMIYTLTAAFIVSLVDVFIFGNSII
YGITLIVIAGIVSAVGPFLKQNDIISLLILNLISIIILLFLALLSPIYELVEILVLIP
ISFIITIASAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHLNEVSSKAEEK
KQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVV
IRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRKSQRKVFKD
ADDMVHVAKSEGRNKVMFNPIVKL"
misc_feature complement(<414209..414532)
/locus_tag="SERP0413"
/note="5TMR of 5TMR-LYT; Region: 5TM-5TMR_LYT; pfam07694"
/db_xref="CDD:219520"
misc_feature complement(413528..414064)
/locus_tag="SERP0413"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:225109"
misc_feature complement(413534..414010)
/locus_tag="SERP0413"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(413771..413773,413900..413902))
/locus_tag="SERP0413"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(413768..413779,413783..413785,
413849..413851,413861..413863,413873..413878,
413885..413887))
/locus_tag="SERP0413"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(413711..413713,413795..413797))
/locus_tag="SERP0413"
/note="I-site; other site"
/db_xref="CDD:143635"
gene 414923..416002
/locus_tag="SERP0414"
/db_xref="GeneID:3242610"
CDS 414923..416002
/locus_tag="SERP0414"
/note="Possible involvement in methicillin resistance;
identified by similarity to EGAD:23076; match to protein
family HMM PF00953"
/codon_start=1
/transl_table=11
/product="glycosyl transferase, group 4 family protein"
/protein_id="YP_188007.1"
/db_xref="GI:57866374"
/db_xref="GeneID:3242610"
/translation="MYTLLLIAFTMIVSLIITPIIIVISKKLDLVDRPNFRKVHTKPI
SVMGGTVILFSFLIGIWLGHPIEREVKPLILGAITMYMVGLIDDIYDLRPYLKLAGQI
VAALIVTFYGITIDFISLPIGPTIHFGIFSIPITVIWIVAITNAINLIDGLDGLASGV
SALALMTIGFIAILQANIFIIMICCVLLGSLLGFLFYNFHPAKIFLGDSGALMIGFII
GFLSLLGFKNITFIALFFPIVILAVPFIDTLFAMIRRMKKGQHIMQADKSHLHHKLLA
LGYTHRQTVLLIYSIAIMFSLSSVILYLSQPLGALMMFILIVFTIELIVEFTGLIDDN
YRPILNLITKKGNGKQHHYDEHHRS"
misc_feature 415019..415846
/locus_tag="SERP0414"
/note="UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane];
Region: Rfe; COG0472"
/db_xref="CDD:223548"
misc_feature 415031..415759
/locus_tag="SERP0414"
/note="This subfamily contains Escherichia coli WecA,
Bacillus subtilis TagO and related proteins. WecA is an
UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate
(Und-P) GlcNAc-1-phosphate transferase that catalyzes the
formation of a phosphodiester bond...; Region:
GT_WecA_like; cd06853"
/db_xref="CDD:133463"
misc_feature 415181..415186
/locus_tag="SERP0414"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133463"
misc_feature 415535..415546
/locus_tag="SERP0414"
/note="putative catalytic motif [active]"
/db_xref="CDD:133463"
misc_feature order(415685..415687,415727..415738)
/locus_tag="SERP0414"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133463"
gene complement(416063..416704)
/locus_tag="SERP0415"
/db_xref="GeneID:3242611"
CDS complement(416063..416704)
/locus_tag="SERP0415"
/note="identified by similarity to OMNI:SA0811; match to
protein family HMM PF01205; match to protein family HMM
TIGR00257"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188008.1"
/db_xref="GI:57866375"
/db_xref="GeneID:3242611"
/translation="MDKSIITIKQAHSIENVISKSRFIAYIKPVSTENEAKAFIDEIK
TKHKDATHNCSAYTVGPEMNIQKANDDGEPSGTAGIPMLEILKKQEIHNVCVVVTRYF
GGIKLGAGGLIRAYSGAVRDVIYDIGRVELREAIPVTVTLDYDQTGKFEYELASTTFL
LREQFYTDKVSYQIDVVKNEYDAFIDFLNRITSGNYDLKQEDLKLLPFDIETN"
misc_feature complement(416099..416695)
/locus_tag="SERP0415"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1739"
/db_xref="CDD:224653"
misc_feature complement(416333..416653)
/locus_tag="SERP0415"
/note="Uncharacterized protein family UPF0029; Region:
UPF0029; pfam01205"
/db_xref="CDD:216363"
misc_feature complement(416123..416287)
/locus_tag="SERP0415"
/note="Domain of unknown function (DUF1949); Region:
DUF1949; pfam09186"
/db_xref="CDD:204160"
gene 416849..417715
/locus_tag="SERP0416"
/db_xref="GeneID:3242612"
CDS 416849..417715
/locus_tag="SERP0416"
/note="identified by match to protein family HMM PF02645;
match to protein family HMM TIGR00762"
/codon_start=1
/transl_table=11
/product="DegV family protein"
/protein_id="YP_188009.1"
/db_xref="GI:57866376"
/db_xref="GeneID:3242612"
/translation="MKIAVMTDSTSYLPQHIIEQYNIPVASLSVTFDDGVNFTESDDF
SVDDFYKKMASSKTIPTTSQPAIGDWIENFERLREQGYTDVIVINLSSGISGSYPSAT
QAGEMVEDIQVHTFDSRLAAMIEGSFAIYAAQLVQKGYKPDDIINELTEIRQHIGAYL
IVDDLKNLQKSGRITGAQAWVGTLLKMKPVLRFEEDGKIHPHEKVRTKKRALKSLETN
IFKEIEGMEDVTVFVINGDKTEDGKSFLQQLKEDHPNVHIQYCEFGPVIASHLGSGGL
GLGYFPRRIDIN"
misc_feature 416855..417658
/locus_tag="SERP0416"
/note="EDD domain protein, DegV family; Region: DegV;
TIGR00762"
/db_xref="CDD:213558"
misc_feature 417068..417697
/locus_tag="SERP0416"
/note="Uncharacterized protein, DegV family COG1307;
Region: DegV; pfam02645"
/db_xref="CDD:217162"
gene 417958..419121
/locus_tag="SERP0417"
/db_xref="GeneID:3242613"
CDS 417958..419121
/locus_tag="SERP0417"
/note="identified by similarity to EGAD:24480; match to
protein family HMM PF00271"
/codon_start=1
/transl_table=11
/product="competence protein ComF"
/protein_id="YP_188010.1"
/db_xref="GI:57866377"
/db_xref="GeneID:3242613"
/translation="MQYFVTYNSTILDKTITYCRRCIQLGRMDSITDICLVKSFQKAT
KANYQLPFELSKQQQYASETIVQAIKNNNDLLLYAVTGAGKTEMMFEGIRIARQMGHN
IAIVSPRVDVIIEISHRIKDAFIDEHIDVLHQSSRQQYNGHFVIATIHQLLRFKQHFD
TVFVDEVDAFPLSMDPQLSNAIQLASKSNHSHIFMTATPPRHFLKQFPPEKIIKLPAR
FHRSPLPIPKFKYFKLKSTRKQNLLLNIFRYQINQQRFTLVFINNIEIMNKMYQQYKM
DIPDLICVHSEDDLRFEKIEALRRGQHKIVFTTTILERGFTMTHLDVVVVDAGSFQQE
ALIQIAGRVGRKQQSPSGLVLFLHEGVTLSMILAKRNIISMNRLAIKRGWIDA"
misc_feature 418105..418635
/locus_tag="SERP0417"
/note="DEAD-like helicases superfamily; Region: DEXDc;
smart00487"
/db_xref="CDD:197756"
misc_feature 418174..418554
/locus_tag="SERP0417"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 418201..418215
/locus_tag="SERP0417"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 418450..418461
/locus_tag="SERP0417"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 418648..419022
/locus_tag="SERP0417"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(418741..418752,418810..418815,418882..418890)
/locus_tag="SERP0417"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(418906..418908,418969..418971,418981..418983,
418990..418992)
/locus_tag="SERP0417"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 419114..419788
/locus_tag="SERP0418"
/db_xref="GeneID:3242614"
CDS 419114..419788
/locus_tag="SERP0418"
/codon_start=1
/transl_table=11
/product="competence protein ComF"
/protein_id="YP_188011.1"
/db_xref="GI:57866378"
/db_xref="GeneID:3242614"
/translation="MRKCIQCNQPIHETIHIYNLFKPPQIFCERCETLWLNSKIHKDG
RCPKCLNNKISTDGECHDCQFLSKTFYLMEQLFCDYSYDGMMKEIIHQYKIKRDFYLA
EVLARKLVLPQTQYDYIVPIPSPIERDIERTFNPVTTVLDKMGISYQDVLGTHIRPKQ
SKLGKIERSKAPNPFYIKDEEINIEGKVILLIDDIYTTGLTIHHAGCKLYDKKVRKFK
VFAFAR"
misc_feature 419240..419740
/locus_tag="SERP0418"
/note="Predicted amidophosphoribosyltransferases [General
function prediction only]; Region: ComFC; COG1040"
/db_xref="CDD:223970"
misc_feature 419414..>419728
/locus_tag="SERP0418"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(419480..419482,419507..419509,419690..419698,
419702..419716)
/locus_tag="SERP0418"
/note="active site"
/db_xref="CDD:206754"
gene 419849..420418
/locus_tag="SERP0419"
/db_xref="GeneID:3242615"
CDS 419849..420418
/locus_tag="SERP0419"
/note="identified by match to protein family HMM PF02482;
match to protein family HMM TIGR00741"
/codon_start=1
/transl_table=11
/product="ribosomal subunit interface protein"
/protein_id="YP_188012.1"
/db_xref="GI:57866379"
/db_xref="GeneID:3242615"
/translation="MIRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAVAHVRV
KTYSNSTTKIEVTIPLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD
RGDQDIFVAEVQESTTNNHADDIESENDIEIIRSKQFSLKPMDSEEAVLQMNLLGHDF
FIFTDRETDGTSIVYRRKDGKYGLIETTE"
misc_feature 419855..420133
/locus_tag="SERP0419"
/note="RaiA ('ribosome-associated inhibitor A', also known
as Protein Y (PY), YfiA, and SpotY, is a stress-response
protein that binds the ribosomal subunit interface and
arrests translation by interfering with aminoacyl-tRNA
binding to the ribosomal...; Region: RaiA; cd00552"
/db_xref="CDD:238308"
misc_feature order(419861..419863,419867..419869,419873..419875,
419927..419929,419936..419938,419954..419959,
419969..419971,419981..419983,420017..420019,
420026..420037,420044..420046,420050..420052,
420059..420061,420065..420067,420074..420076,
420116..420121,420131..420133)
/locus_tag="SERP0419"
/note="30S subunit binding site; other site"
/db_xref="CDD:238308"
gene 421084..423618
/gene="secA"
/locus_tag="SERP0420"
/gene_synonym="azi; div"
/db_xref="GeneID:3242616"
CDS 421084..423618
/gene="secA"
/locus_tag="SERP0420"
/gene_synonym="azi; div"
/note="functions in protein export; can interact with
acidic membrane phospholipids and the SecYEG protein
complex; binds to preproteins; binds to ATP and undergoes
a conformational change to promote membrane insertion of
SecA/bound preprotein; ATP hydrolysis appears to drive
release of the preprotein from SecA and deinsertion of
SecA from the membrane; additional proteins SecD/F/YajC
aid SecA recycling; exists in an equilibrium between
monomers and dimers; may possibly form higher order
oligomers; proteins in this cluster correspond SecA1;
SecA2 is not essential and seems to play a role in
secretion of a subset of proteins"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecA"
/protein_id="YP_188013.1"
/db_xref="GI:57866380"
/db_xref="GeneID:3242616"
/translation="MGFLSKIVDGNKKEIKRLGKLADKVLALEEDTAILTDEEIREKT
KSFQKELAEIEDVKKQNDYLDKILPEAYALVREGSKRVFNMIPYKVQVMGGIAIHKGD
IAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSSQSEEMAELYNYLGLTVGL
NLNSKSTEEKREAYAQDITYSTNNELGFDYLRDNMVNYAEERVMRPLHFAIIDEVDSI
LIDEARTPLIISGEAEKSTSLYTQANVFAKMLKAEDDYNYDEKTKAVHLTEQGADKAE
RMFKVDNLYDVQNVEVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRR
FSEGLHQAIEAKEGVAIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYN
MTVTQIPTNKPVQRKDNSDLIYISQKGKFDAVVEDVVEKHKKGQPVLLGTVAVETSEY
ISNLLKKRGVRHDVLNAKNHEREAEIVSNAGQKGAVTIATNMAGRGTDIKLGDGVEEL
GGLAVIGTERHESRRIDDQLRGRSGRQGDRGDSRFYLSLQDELMVRFGSERLQKMMNR
LGMDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNEII
DSEESSQVVNAMLRSTLQRAINHFINEEDDNPDYTPFINYVNDVFLQEGDLQDTEIKG
KDSEDIFEIVWSKIEKAYAQQQETLGDQMSEFERMILLRSIDTHWTDHIDTMDQLRQG
IHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKYILKSVVQFEDDVEREKSKSFG
EAKHVTAEDGKEKAKPQPIVKGDQVGRNDPCPCGSGKKYKNCHGKA"
misc_feature 421084..423612
/gene="secA"
/locus_tag="SERP0420"
/gene_synonym="azi; div"
/note="preprotein translocase subunit SecA; Reviewed;
Region: PRK12904"
/db_xref="CDD:237259"
misc_feature 421780..422115
/gene="secA"
/locus_tag="SERP0420"
/gene_synonym="azi; div"
/note="SecA preprotein cross-linking domain; Region:
SecA_PP_bind; pfam01043"
/db_xref="CDD:144583"
misc_feature 423556..423612
/gene="secA"
/locus_tag="SERP0420"
/gene_synonym="azi; div"
/note="SEC-C motif; Region: SEC-C; pfam02810"
/db_xref="CDD:202406"
gene 423814..424930
/gene="prfB"
/locus_tag="SERP0421"
/db_xref="GeneID:3240768"
CDS join(423814..423885,423887..424930)
/gene="prfB"
/locus_tag="SERP0421"
/ribosomal_slippage
/note="identified by match to protein family HMM PF00472;
match to protein family HMM PF03462; match to protein
family HMM TIGR00020; programmed frameshift"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_188014.1"
/db_xref="GI:57866389"
/db_xref="GeneID:3240768"
/translation="MELSEIKRNLEEYQNHLNQIRGSLDLENKETNIQEYEEMMTDPD
FWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQEEYDEDMKIELEEEV
QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQNGF
KVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFAS
CDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQN
ERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMI
KDHRTNEETGKVDAVMDGEIGPFIEAYLRKEMDSRDV"
misc_feature join(423817..423885,423887..424921)
/gene="prfB"
/locus_tag="SERP0421"
/note="peptide chain release factor 2; Validated; Region:
prfB; PRK00578"
/db_xref="CDD:179072"
misc_feature 424064..424396
/gene="prfB"
/locus_tag="SERP0421"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature 424535..424828
/gene="prfB"
/locus_tag="SERP0421"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 425270..426070
/locus_tag="SERP0422"
/db_xref="GeneID:3240769"
CDS 425270..426070
/locus_tag="SERP0422"
/note="identified by match to protein family HMM PF01476;
match to protein family HMM PF05257"
/codon_start=1
/transl_table=11
/product="LysM domain-containing protein"
/protein_id="YP_188015.1"
/db_xref="GI:57866390"
/db_xref="GeneID:3240769"
/translation="MKKTLTVTLSSIAAFIAINTAANAQESETSQLDTYATGDVITNQ
SNLGIYIVKPGDSLYKIALEHNLSLEELYALNPGVEPLIFPGDEIVVSETAFEQFNNT
NTFVNYETNYIPVGYNNVSTDTSNTTYDNYDSESTDTYSVSNAYDGLRSVSNSGNLYT
TGQCTYYAFDRRAELGKPIGSLWGNASNWAYSANQAGFNVDHTPEVGAVFQSGPGQNG
AGAYGHVGVVESINSNGSVTVSEMNWNGGVNVKSYRTISNPNSYNYIH"
misc_feature <425414..425557
/locus_tag="SERP0422"
/note="FOG: LysM repeat [Cell envelope biogenesis, outer
membrane]; Region: LytE; COG1388"
/db_xref="CDD:224306"
misc_feature 425414..425542
/locus_tag="SERP0422"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 425717..426064
/locus_tag="SERP0422"
/note="CHAP domain; Region: CHAP; pfam05257"
/db_xref="CDD:218523"
misc_feature <425720..426067
/locus_tag="SERP0422"
/note="Surface antigen [General function prediction only];
Region: COG3942"
/db_xref="CDD:226451"
gene 426379..427020
/locus_tag="SERP0423"
/db_xref="GeneID:3240770"
CDS 426379..427020
/locus_tag="SERP0423"
/codon_start=1
/transl_table=11
/product="HD domain-containing protein"
/protein_id="YP_188016.1"
/db_xref="GI:57866391"
/db_xref="GeneID:3240770"
/translation="MGMHQYFKRLSDLEKLIRLPGKFKYFEHNVAAHSFKVTKIAQYM
ATVEEYHGNKIDWKSLYEKSLNHDFAEVFTGDIKTPVKYASKELKHLFSQVEEEMVDT
FIKEEIPTQYQHVYRERLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEPLFFE
IYEMSLETIIQFDHLESVKDFIENVIPEMLTENFIPRTELRETTMSILNRRNG"
misc_feature 426460..426852
/locus_tag="SERP0423"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature order(426475..426477,426577..426582,426787..426789)
/locus_tag="SERP0423"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 426580..426582
/locus_tag="SERP0423"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
gene 427026..427259
/locus_tag="SERP0424"
/db_xref="GeneID:3240771"
CDS 427026..427259
/locus_tag="SERP0424"
/note="identified by similarity to EGAD:12337"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188017.1"
/db_xref="GI:57866392"
/db_xref="GeneID:3240771"
/translation="MIWYVCAAFFPCILVVLFSVVTRSKWIGTLVTLVIIGASVYKGF
FHNEWIIFIDVTSLLAGYLIIDQLEFHKNQNDS"
misc_feature 427029..427250
/locus_tag="SERP0424"
/note="Uncharacterized protein conserved in bacteria
(DUF2198); Region: DUF2198; pfam09964"
/db_xref="CDD:192431"
gene complement(427742..427834)
/locus_tag="SERP0425"
/db_xref="GeneID:3240772"
CDS complement(427742..427834)
/locus_tag="SERP0425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188018.1"
/db_xref="GI:57866393"
/db_xref="GeneID:3240772"
/translation="MEHVLPFQNTPPNIVIIYKDFTHLKSITFS"
gene 427816..429801
/gene="uvrB"
/locus_tag="SERP0426"
/db_xref="GeneID:3240773"
CDS 427816..429801
/gene="uvrB"
/locus_tag="SERP0426"
/note="The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. The beta-hairpin of the
Uvr-B subunit is inserted between the strands, where it
probes for the presence of a lesion"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit B"
/protein_id="YP_188019.1"
/db_xref="GI:57866394"
/db_xref="GeneID:3240773"
/translation="MVEHVPFKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATG
TGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEA
YVPSTDTFIEKDASINDEIDQLRHSATSSLFERDDVIIIASVSCIYGLGNPEEYKNLV
VSVRVGMEMERSELLRKLVDVQYSRNDIDFQRGTFRVRGDVVEIFPASREEMCIRVEF
FGDEIDRIREVNYLTGEVIREREHFTIFPASHFVTREEKMKVAIERIEKELEERLKEL
RDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDD
WLVMIDESHVTLPQIRGMYNGDRARKQVLIDHGFRLPSALDNRPLKFEEFEEKTKQLV
YVSATPGPYELEHTDEMVEQIIRPTGLLDPKIDVRPTENQIDDLLSEIQDRVDKDERV
LVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDAIVGINLLR
EGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAARNDKGEVIMYADKITDSMQYAI
DETQRRREIQIAHNKEHGITPKTINKKIHDVISATVESDETNQQQQTELPKKMTKKER
QKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAEG"
misc_feature 427831..429795
/gene="uvrB"
/locus_tag="SERP0426"
/note="excinuclease ABC subunit B; Provisional; Region:
PRK05298"
/db_xref="CDD:235395"
misc_feature 427918..>428118
/gene="uvrB"
/locus_tag="SERP0426"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature 427945..427959
/gene="uvrB"
/locus_tag="SERP0426"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature 429091..429477
/gene="uvrB"
/locus_tag="SERP0426"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature order(429178..429189,429247..429252,429325..429333)
/gene="uvrB"
/locus_tag="SERP0426"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature order(429349..429351,429427..429429,429439..429441,
429448..429450)
/gene="uvrB"
/locus_tag="SERP0426"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
misc_feature 429472..429603
/gene="uvrB"
/locus_tag="SERP0426"
/note="Ultra-violet resistance protein B; Region: UvrB;
pfam12344"
/db_xref="CDD:204889"
misc_feature 429688..429795
/gene="uvrB"
/locus_tag="SERP0426"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene 429809..432643
/gene="uvrA"
/locus_tag="SERP0427"
/db_xref="GeneID:3240774"
CDS 429809..432643
/gene="uvrA"
/locus_tag="SERP0427"
/note="The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. UvrA is an ATPase and a
DNA-binding protein. A damage recognition complex composed
of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities.
When the presence of a lesion has been verified by uvrB,
the uvrA molecules dissociate"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit A"
/protein_id="YP_188020.1"
/db_xref="GI:57866395"
/db_xref="GeneID:3240774"
/translation="MKGPSIVVKGARAHNLKGVDIELPKNKLIVMTGLSGSGKSSLAF
DTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVAT
VTEIYDYIRLLYARVGKPYCPYHGIEIESQTVQQMVDRILELEERTKIQLLAPVISHR
KGSHEKLIEDIGKKGYVRLRVDDEIVDVNEVPQLDKNKNHTIEVVVDRLVVKDGIETR
LADSIETALELAEGNLTVDVINGEELKFSENHACPICGFSIGELEPRMFSFNSPFGAC
PTCDGLGQKLKVDLDLVIPDKNKTLNEGAIEPWEPTSSDFYPTLLKRVCEVYKINMDK
PYKKLTDRQKNILMNGSGEKEIEFTFTQRNGGTRKRKMVFEGVVPNIDRRYHESPSEY
TREMMSKYMTELPCETCHGKRLSKEALSVYVGDYNIGEVVEYSIKNALYYFENLKLSD
QDKSIADQILKEIISRLSFLNNVGLEYLTLDRSSGTLSGGEAQRIRLATQIGSRLTGV
LYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDVGPGAGN
HGGEVVSSGTPNKVMKDKKSLTGQYLSGKKRIEVPEYRREITDRKIQIKGAKSNNLKN
VNVDFPLSVLTVVTGVSGSGKSSLVNEILYKALAQKINKSKVKPGNFDEIKGIDQLDK
IIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEA
CKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADVLEMTVEEATHFF
ENIPKIKRKLQTLVDVGLGYITLGQQATTLSGGEAQRVKLASELHKRSTGRSIYILDE
PTTGLHVDDISRLLKVLNRIVENGDTVVIIEHNLDVIKTADHIIDLGPEGGEGGGTII
ATGTPEEIAQNKGSYTGQYLKPVLERDSVE"
misc_feature 429809..432628
/gene="uvrA"
/locus_tag="SERP0427"
/note="excinuclease ABC subunit A; Reviewed; Region: uvrA;
PRK00349"
/db_xref="CDD:178984"
misc_feature 429824..>430162
/gene="uvrA"
/locus_tag="SERP0427"
/note="ATP-binding cassette domain I of the excision
repair protein UvrA; Region: ABC_UvrA_I; cd03270"
/db_xref="CDD:213237"
misc_feature <431195..431533
/gene="uvrA"
/locus_tag="SERP0427"
/note="ATP-binding cassette domain I of the excision
repair protein UvrA; Region: ABC_UvrA_I; cd03270"
/db_xref="CDD:213237"
misc_feature 431642..432514
/gene="uvrA"
/locus_tag="SERP0427"
/note="ATP-binding cassette domain II of the excision
repair protein UvrA; Region: ABC_UvrA_II; cd03271"
/db_xref="CDD:213238"
gene 432998..433930
/gene="hprK"
/locus_tag="SERP0428"
/db_xref="GeneID:3240775"
CDS 432998..433930
/gene="hprK"
/locus_tag="SERP0428"
/EC_number="2.7.1.-"
/note="catalyzes the phosphorylation of the phosphocarrier
protein HPr of the bacterial phosphotransferase system"
/codon_start=1
/transl_table=11
/product="HPr kinase/phosphorylase"
/protein_id="YP_188021.1"
/db_xref="GI:57866396"
/db_xref="GeneID:3240775"
/translation="MLTTDRLVNTLNLELLTGEEGLDRPIKNTDISRPGLEMAGYFSH
YASDRIQLLGTTELSFYNLLPDEEKKGRMRKLCRPETPAIIVTRGLEPPEELIQASQE
THTPIIVAKDATTSLMSRLTTFLEHELAKTTSLHGVLVDVYGVGVLITGDSGIGKSET
ALELVKRGHRLVADDNVEIKEITKDELVGKPPKLIEHLLEIRGLGIINVMTLFGAGSI
LTEKQIRLNINLENWNKNKLYDRVGLNEETLKILDTEITKKTIPVRPGRNVAVIIEVA
AMNYRLNIMGINTAVEFNERLNEEIVRNSHKSEE"
misc_feature 432998..433915
/gene="hprK"
/locus_tag="SERP0428"
/note="HPr kinase/phosphorylase; Provisional; Region:
PRK05428"
/db_xref="CDD:235459"
misc_feature 433064..433375
/gene="hprK"
/locus_tag="SERP0428"
/note="HPr Serine kinase N terminus; Region: Hpr_kinase_N;
pfam02603"
/db_xref="CDD:190362"
misc_feature 433442..433837
/gene="hprK"
/locus_tag="SERP0428"
/note="HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates the
utilization of carbon sources by gram-positive bacteria.
It catalyzes both the ATP-dependent...; Region: HprK_C;
cd01918"
/db_xref="CDD:238899"
misc_feature order(433454..433459,433466..433468,433481..433483,
433493..433495,433520..433525,433529..433531,
433577..433579,433595..433597,433607..433615,
433628..433630,433718..433726,433775..433777,
433808..433810,433817..433819)
/gene="hprK"
/locus_tag="SERP0428"
/note="Hpr binding site; other site"
/db_xref="CDD:238899"
misc_feature order(433457..433459,433463..433471,433517..433522,
433595..433597,433601..433603)
/gene="hprK"
/locus_tag="SERP0428"
/note="active site"
/db_xref="CDD:238899"
misc_feature order(433475..433477,433481..433483,433493..433498,
433505..433507,433577..433579,433589..433591,
433607..433609,433613..433621,433628..433636,
433772..433774,433820..433825,433829..433831)
/gene="hprK"
/locus_tag="SERP0428"
/note="homohexamer subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:238899"
gene 433936..434775
/gene="lgt"
/locus_tag="SERP0429"
/db_xref="GeneID:3241078"
CDS 433936..434775
/gene="lgt"
/locus_tag="SERP0429"
/EC_number="2.4.99.-"
/note="transfers the N-acyl diglyceride moiety to the
prospective N-terminal cysteine in prolipoprotein"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_188022.1"
/db_xref="GI:57866405"
/db_xref="GeneID:3241078"
/translation="MNITLGYIDPVAFSLGPIQVRWYGIIIACGILLGYFIAQAALKQ
VGLHKDTLIDIIFYSAIVGFIVARIYFVTFQWPYYMNHLSEIPKIWHGGIAIHGGLIG
GLISGIIVCKIKNLHPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEHLH
LPDFIIRNMYIEGQYYHPTFLYESIWDVIGFVILITLRKRLKLGETFFGYLIWYSVGR
FFVEAMRTDSLMLTSHIRVAQLVSVVLIMISVIFVIYRRVKYQPIKYENSGPLTWPIK
KAK"
misc_feature 433939..434712
/gene="lgt"
/locus_tag="SERP0429"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK12437"
/db_xref="CDD:183527"
gene 434781..435308
/locus_tag="SERP0430"
/db_xref="GeneID:3241079"
CDS 434781..435308
/locus_tag="SERP0430"
/note="identified by match to protein family HMM PF00132"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_188023.1"
/db_xref="GI:57866406"
/db_xref="GeneID:3241079"
/translation="MRRLSKEKHHQVNPLWHIYRKIKFVKVLKQTLIIEIARFVPSMK
LKNKIYKKLLKMDVGNHTSFAYKVLPDLFYPEYISVGKNTVIGYNTTILTHEVLVDEW
RVGKVIIGDYTLIGANTTILPGITIGNHVKIGAGTVVSKDVPDYSFAFGNPMQIQLDS
GGDNEWHKKKITSFQ"
misc_feature 434952..435248
/locus_tag="SERP0430"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature order(434961..434963,434967..434969,434997..434999,
435027..435029,435033..435035,435051..435053,
435069..435077,435114..435116,435120..435122,
435129..435131,435186..435188,435234..435236)
/locus_tag="SERP0430"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature order(434967..434969,434973..434975,435069..435071,
435075..435077,435120..435122,435126..435131,
435144..435146,435180..435185,435198..435203,
435228..435233,435237..435239)
/locus_tag="SERP0430"
/note="active site"
/db_xref="CDD:100053"
misc_feature order(434967..434969,434973..434975,435069..435071)
/locus_tag="SERP0430"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature <434970..435248
/locus_tag="SERP0430"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:30459"
misc_feature order(435069..435071,435075..435077,435120..435122,
435126..435131,435144..435146,435174..435176,
435180..435185,435198..435203,435222..435224,
435228..435233,435237..435239)
/locus_tag="SERP0430"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
gene 435275..436714
/gene="yvcD"
/locus_tag="SERP0431"
/db_xref="GeneID:3241080"
CDS 435275..436714
/gene="yvcD"
/locus_tag="SERP0431"
/note="identified by similarity to GP:5690062; match to
protein family HMM PF00515"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188024.1"
/db_xref="GI:57866407"
/db_xref="GeneID:3241080"
/translation="MAQKENNIIPMIFDEAFYRKMATQKWRQQDYKKAAEYYEKVLEL
SPKDFDIQQHYAQCLVKLNIGKKAERLFYENIVKDFHVAESFYELSQLNIELNEPNKA
FLFGINYVILSEDKDFREMLEKTFEVTYTNEQKIELEAQLFSTQLLFQFLFSQGRLEE
ARTYILNQSYEIQQHRVIRNLLAMCYLYLGEYDSAKAMFEELLKEDNSDVHALCHYTL
LLYNKKETEKYQKYLKILNKVVPLNDDETFKLGIVLSYLKQYRASQNLLYPLYKKGKF
VSIQMYNALSFNFYYLGNKDESIEMWNKLTQISEVDVGYAPWVIEESKTVFESRVLPL
LLDDNNHYRLYGIFLLHQLNGKEILMTEDIWSILESMNDYEKLYLTYLVQGLTLNKLD
FIHRGMQRLYNFKKFKYNTSLFTDWINQAEMIIAENVDLVDVDRYVAAFVYLSYRRSS
QPLTKRQLMDDFNVSRYKLNKAIEFILSI"
misc_feature 435323..>435463
/gene="yvcD"
/locus_tag="SERP0431"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:222112"
misc_feature <435812..435997
/gene="yvcD"
/locus_tag="SERP0431"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(435812..435817,435821..435826,435833..435838,
435914..435919,435926..435931,435938..435943)
/gene="yvcD"
/locus_tag="SERP0431"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature order(435821..435823,435857..435859,435869..435871,
435878..435880,435923..435925,435959..435961,
435971..435973,435980..435982)
/gene="yvcD"
/locus_tag="SERP0431"
/note="TPR motif; other site"
/db_xref="CDD:238112"
gene 436779..437711
/gene="trxB"
/locus_tag="SERP0432"
/db_xref="GeneID:3241081"
CDS 436779..437711
/gene="trxB"
/locus_tag="SERP0432"
/EC_number="1.8.1.9"
/note="identified by similarity to SP:P80880; match to
protein family HMM PF00070; match to protein family HMM
TIGR01292"
/codon_start=1
/transl_table=11
/product="thioredoxin-disulfide reductase"
/protein_id="YP_188025.1"
/db_xref="GI:57866408"
/db_xref="GeneID:3241081"
/translation="MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMIERGMPGGQMA
NTEEVENFPGFEMITGPDLSTKMFEHAKKFGAEYQYGDIKSVEDKGDYKVINLGNKEI
TAHAVIISTGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEG
TFLTKFADKVTIVHRRDELRAQNILQERAFKNDKVDFIWSHTLKTINEKDGKVGSVTL
ESTKDGAEQTYDADGVFIYIGMKPLTAPFKNLGITNDAGYIVTQDDMSTKVRGIFAAG
DVRDKGLRQIVTATGDGSIAAQSAADYITELKDN"
misc_feature 436797..437690
/gene="trxB"
/locus_tag="SERP0432"
/note="thioredoxin-disulfide reductase; Region:
TRX_reduct; TIGR01292"
/db_xref="CDD:233345"
misc_feature 436803..437309
/gene="trxB"
/locus_tag="SERP0432"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; cl17500"
/db_xref="CDD:248054"
misc_feature 437214..437444
/gene="trxB"
/locus_tag="SERP0432"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
gene 437908..438795
/locus_tag="SERP0433"
/db_xref="GeneID:3241082"
CDS 437908..438795
/locus_tag="SERP0433"
/note="identified by similarity to OMNI:SA0830; match to
protein family HMM PF03668"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188026.1"
/db_xref="GI:57866409"
/db_xref="GeneID:3241082"
/translation="MGKSELLVVTGMSGAGKSLVIQSLEDMGFFCVDNLPPVLLPKFV
ELMAQGNPSLQKVAIAIDLRGKELFKSLVKEIDIIKSRNDVILDVMFLEAKTEKIISR
YKESRRAHPLNEQGQRSLIDAINEEREHLSEIRSIANYVIDTTKLKPKELKQRISKFY
LDENFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVEELRPFIGLDEPVYNYVM
KWKETQIFFDKLTDLLKFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAKRLAEYLNEI
FEYNVYVHHRDAHIESGER"
misc_feature 437908..438786
/locus_tag="SERP0433"
/note="glmZ(sRNA)-inactivating NTPase; Provisional;
Region: PRK05416"
/db_xref="CDD:180064"
misc_feature 437920..438780
/locus_tag="SERP0433"
/note="Predicted P-loop-containing kinase [General
function prediction only]; Region: COG1660"
/db_xref="CDD:31846"
gene 438804..439790
/locus_tag="SERP0434"
/db_xref="GeneID:3240548"
CDS 438804..439790
/locus_tag="SERP0434"
/note="identified by similarity to OMNI:SA0831; match to
protein family HMM PF01933; match to protein family HMM
TIGR01826"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188027.1"
/db_xref="GI:57866410"
/db_xref="GeneID:3240548"
/translation="MNVVLIGGGTGLSVLARGLREFPIDITAIVTVADNGGSTGKIRD
VMDIPAPGDIRNVIAALSDSESILTQLFQYRFGENQVDGHSLGNLVIAGMTNITNDFG
HAIKELSKVLNIKGQVIPSTNASVQLNAVMEDGEIVHGETNIPKTHKKIDRVFLEPSD
VEPMNEAIEALEQADLIVLGPGSLYTSVISNLCVKGISEALLRTSAPKLYVSNVMTQP
GETDNYDVKEHIDALTRQVGEPFIDFVICSSESYSKDVLQRYEEKNSKPVAVHKEQLK
DSGIRVLTASNLVEISNEHYVRHNTKVLSKMIYELALELTSTIRFTPSDKKK"
misc_feature 438810..439733
/locus_tag="SERP0434"
/note="Family of CofD-like proteins and proteins related
to YvcK; Region: CofD_YvcK; cd07044"
/db_xref="CDD:132871"
misc_feature 438810..439673
/locus_tag="SERP0434"
/note="Uncharacterized protein family UPF0052; Region:
UPF0052; pfam01933"
/db_xref="CDD:202052"
misc_feature order(438825..438833,439347..439352,439362..439364,
439449..439454)
/locus_tag="SERP0434"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:132871"
misc_feature order(439068..439073,439080..439085,439089..439094,
439122..439124,439131..439136)
/locus_tag="SERP0434"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132871"
gene 439919..440863
/locus_tag="SERP0435"
/db_xref="GeneID:3240549"
CDS 439919..440863
/locus_tag="SERP0435"
/note="identified by similarity to OMNI:SA0832; match to
protein family HMM PF02650; match to protein family HMM
TIGR00647"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188028.1"
/db_xref="GI:57866411"
/db_xref="GeneID:3240549"
/translation="MSFASDMKNELTRIEVDESNAKAELSALIRMNGALSLSNQQFVI
NVQTENATTARRIYSLIKRIFNVEVEILVRKKMKLKKNNIYICRTKMLAKEILNDLGI
LKKGVFTHDIDPDMIKDDEMKRSYLRGAFLAGGSVNNPETSSYHLEIFSQYEDHSEGL
TKLMNSYELNAKHLERKKGSIAYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNS
VNRLVNCETANLNKTVSAAMKQVESIQLIDEEIGLENLPDRLREVAKLRVEHQEISLK
ELGEMVSTGPISKSGMNHRLRKLNELADKIRNGEQIEL"
misc_feature 439919..440851
/locus_tag="SERP0435"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG1481"
/db_xref="CDD:224398"
misc_feature 439970..440227
/locus_tag="SERP0435"
/note="Sporulation Regulator WhiA N terminal; Region:
WhiA_N; pfam10298"
/db_xref="CDD:150898"
gene complement(440931..441002)
/locus_tag="SERP_tRNA-Arg-2"
/db_xref="GeneID:3242181"
tRNA complement(440931..441002)
/locus_tag="SERP_tRNA-Arg-2"
/product="tRNA-Arg"
/db_xref="GeneID:3242181"
gene 441191..441775
/gene="clpP"
/locus_tag="SERP0436"
/db_xref="GeneID:3240550"
CDS 441191..441775
/gene="clpP"
/locus_tag="SERP0436"
/EC_number="3.4.21.92"
/note="hydrolyzes proteins to small peptides; with the
ATPase subunits ClpA or ClpX, ClpP degrades specific
substrates"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease proteolytic subunit"
/protein_id="YP_188029.1"
/db_xref="GI:57866412"
/db_xref="GeneID:3240550"
/translation="MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSI
VSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSF
LLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQ
SIEKIQQDTDRDNFLTAAEAKEYGLIDEVMEPEK"
misc_feature 441224..441769
/gene="clpP"
/locus_tag="SERP0436"
/note="Clp protease; Region: CLP_protease; pfam00574"
/db_xref="CDD:201316"
misc_feature 441245..441757
/gene="clpP"
/locus_tag="SERP0436"
/note="Caseinolytic protease (ClpP) is an ATP-dependent,
highly conserved serine protease; Region: S14_ClpP_2;
cd07017"
/db_xref="CDD:132928"
misc_feature order(441281..441283,441287..441289,441314..441319,
441326..441331,441338..441340,441383..441385,
441404..441406,441416..441418,441425..441427,
441434..441439,441449..441451,441473..441475,
441539..441541,441545..441547,441563..441574,
441614..441616,441623..441625,441629..441631,
441635..441637,441704..441706,441710..441712)
/gene="clpP"
/locus_tag="SERP0436"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:132928"
misc_feature order(441482..441484,441557..441559,441704..441706)
/gene="clpP"
/locus_tag="SERP0436"
/note="active site residues [active]"
/db_xref="CDD:132928"
gene complement(442037..442228)
/locus_tag="SERP0437"
/db_xref="GeneID:3242267"
CDS complement(442037..442228)
/locus_tag="SERP0437"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188030.1"
/db_xref="GI:57866422"
/db_xref="GeneID:3242267"
/translation="MKDTQLTYILLIIASILLIANGIFAFERTLSMILMSILFILVGI
ILLSTTLNTMYQSSKHSKR"
gene complement(442259..443158)
/locus_tag="SERP0438"
/db_xref="GeneID:3242268"
CDS complement(442259..443158)
/locus_tag="SERP0438"
/note="identified by match to protein family HMM
TIGR01777"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188031.1"
/db_xref="GI:57866423"
/db_xref="GeneID:3242268"
/translation="MKRYLITGGTGMVGSHLVNEIKQTDAHITILTRQDKTSNHPKIT
YINWSKEGWQHQVPDIDIVINLAGATLNKRWTSSHKQAMMLSRIQSTQTLFELFETRE
HKPEVLFNASAMGYYPPDLFTSYTELYRTLPFDFLSEIVYQWERFANKFKQFGTRVVL
GRFGLILSDDGGALEMMELPYRLYVGGKLGSGRQWYSWIHIDDLIRGILFTINHDNAE
GPFNLTAPIPERQNLFGYTLARAMHKPHETWAPKLILRAVLGQMSTVILDTQKVLPNK
LHALGFEFKYNNLRNALDDLIKA"
misc_feature complement(442280..443149)
/locus_tag="SERP0438"
/note="TIGR01777 family protein; Region: yfcH"
/db_xref="CDD:213651"
misc_feature complement(442268..443146)
/locus_tag="SERP0438"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:214164"
misc_feature complement(order(442661..442672,442736..442738,
442748..442750,442820..442828,442955..442963,
443054..443056,443060..443065,443120..443122,
443126..443131,443135..443137))
/locus_tag="SERP0438"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(442736..442738,442748..442750,
442820..442822,442898..442900))
/locus_tag="SERP0438"
/note="active site"
/db_xref="CDD:187535"
gene 444023..444643
/locus_tag="SERP0439"
/db_xref="GeneID:3242269"
CDS 444023..444643
/locus_tag="SERP0439"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188032.1"
/db_xref="GI:57866424"
/db_xref="GeneID:3242269"
/translation="MSGISKFISAIVVLLLLIGLAFGIYSFVDSSKKGNERLSDKTTQ
QEKKKDDKDKKEKKDKKSVEEKKNNTQQTQQVPQTQQTQQTQQTVQTPQRPTTQTPVR
QNPQTGEKRAKEPKTDERKKTRQDSSNSKESPNEKDQSSTQQKPQQNKSNQSSENRQS
TQNKSNQTQSTRPQNNGNSGNQNASSGQNTQKQNNNNQNSQSSKKD"
gene complement(444816..445052)
/locus_tag="SERP0440"
/db_xref="GeneID:3242270"
CDS complement(444816..445052)
/locus_tag="SERP0440"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188033.1"
/db_xref="GI:57866425"
/db_xref="GeneID:3242270"
/translation="MSNHNYSDEKIEVIDPSDDRYKGDDYFNKNSSQNNQNLKTFNQT
YSYGCTHSGCGCILGCLTISLISFLLSLLIFWII"
gene 445408..446421
/gene="gapR"
/locus_tag="SERP0441"
/db_xref="GeneID:3242271"
CDS 445408..446421
/gene="gapR"
/locus_tag="SERP0441"
/note="identified by similarity to OMNI:SA0837; match to
protein family HMM PF04198"
/codon_start=1
/transl_table=11
/product="gap transcriptional regulator"
/protein_id="YP_188034.1"
/db_xref="GI:57866426"
/db_xref="GeneID:3242271"
/translation="MKDLIKVQQKLIPDLIDKMYRRFYILSTISQNQPVGRRSLSEHM
DMTERVLRSETDMLKKQELIRVKPTGMEITNEGTEVLAQLGEYFNVYSDDHKLASAIK
DKFHIKDVHVIPGDSDSNRTVKREMGQQAGQLLEGILYEDAIVSVTGGSTMACVSESI
HLLPFNVFFVPARGGLGENVVYQANTIASSMAQQAGGYYTTLYVPDNVSESTYDTLML
EPSVMHTLDKIKQANITIHGIGDALKMAHRRQSSQNVIDNLQHHQAVGEAFGYYFDAQ
GQIVHKVKTIGLQLEDLENKDFIFAVAGGQSKGEAIKAYLSIAPENTVLITDEAAAKV
ILQ"
misc_feature 445432..446418
/gene="gapR"
/locus_tag="SERP0441"
/note="Transcriptional regulator, contains sigma
factor-related N-terminal domain [Transcription]; Region:
DeoR; COG2390"
/db_xref="CDD:225263"
misc_feature 445678..446415
/gene="gapR"
/locus_tag="SERP0441"
/note="Putative sugar-binding domain; Region: Sugar-bind;
pfam04198"
/db_xref="CDD:217959"
gene 446473..447483
/gene="gapA-1"
/locus_tag="SERP0442"
/db_xref="GeneID:3242272"
CDS 446473..447483
/gene="gapA-1"
/locus_tag="SERP0442"
/EC_number="1.2.1.12"
/note="identified by similarity to EGAD:22254; match to
protein family HMM PF00044; match to protein family HMM
PF02800; match to protein family HMM TIGR01534"
/codon_start=1
/transl_table=11
/product="glyceraldehyde 3-phosphate dehydrogenase"
/protein_id="YP_188035.1"
/db_xref="GI:57866427"
/db_xref="GeneID:3242272"
/translation="MAIKVAINGFGRIGRLAFRRIQDVEGLEVVAVNDLTDDDMLAHL
LKYDTMQGRFTGEVEVIEGGFRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTD
KEKAQAHIDAGAKKVLISAPAKGDVKTIVFNTNHDTLDGSETVVSGASCTTNSLAPVA
KVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIG
KVIPEIDGKLDGGAQRVPVATGSLTELTVVLDKQDVTVDQVNSAMKQASDESFGYTED
EIVSSDIVGMTYGSLFDATQTRVMTVGDRQLVKVAAWYDNEMSYTAQLVRTLAHLAEL
SK"
misc_feature 446479..446922
/gene="gapA-1"
/locus_tag="SERP0442"
/note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain; Region: Gp_dh_N; pfam00044"
/db_xref="CDD:215675"
misc_feature 446482..447450
/gene="gapA-1"
/locus_tag="SERP0442"
/note="glyceraldehyde-3-phosphate dehydrogenase, type I;
Region: GAPDH-I; TIGR01534"
/db_xref="CDD:233453"
misc_feature 446938..447414
/gene="gapA-1"
/locus_tag="SERP0442"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; pfam02800"
/db_xref="CDD:217235"
gene 447677..448867
/gene="pgk"
/locus_tag="SERP0443"
/db_xref="GeneID:3242273"
CDS 447677..448867
/gene="pgk"
/locus_tag="SERP0443"
/EC_number="2.7.2.3"
/note="Converts 3-phospho-D-glycerate to
3-phospho-D-glyceroyl phosphate during the glycolysis
pathway"
/codon_start=1
/transl_table=11
/product="phosphoglycerate kinase"
/protein_id="YP_188036.1"
/db_xref="GI:57866428"
/db_xref="GeneID:3242273"
/translation="MAKKIVSDLDLKGKVVLERADFNVPIKDGEITNDNRIVQALPTI
EYIIEQGGKLVLFSHLGKVKEESDKEGLSLKPVAENLSKKLGKEVIFVPETRGEKLET
AIENLNEGDVLLVENTRFEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHAS
NVGISTHLETAAGYLMEKEIKFIGGVVNDPQKPVVAILGGAKVSDKINVIKNLVNIAD
KILIGGGMAYTFIKAQGKEIGLSLLEEDKIDFAKDLLENNGDQIVLPVDCKIAKEFSN
DAKITEVSINEIPSDQEAMDIGPKTVELFNKELQGAHTVVWNGPMGVFEFSNFAKGTI
GVCESIAKLEDATTIIGGGDSAAAAISLGFEDDFTHISTGGGASLEYLEGKELPGIKA
INDK"
misc_feature 447692..448861
/gene="pgk"
/locus_tag="SERP0443"
/note="Phosphoglycerate kinase (PGK) is a monomeric enzyme
which catalyzes the transfer of the high-energy phosphate
group of 1,3-bisphosphoglycerate to ADP, forming ATP and
3-phosphoglycerate. This reaction represents the first of
the two substrate-level...; Region:
Phosphoglycerate_kinase; cd00318"
/db_xref="CDD:238195"
misc_feature 447692..448831
/gene="pgk"
/locus_tag="SERP0443"
/note="Phosphoglycerate kinase; Region: PGK; pfam00162"
/db_xref="CDD:215761"
misc_feature order(447737..447739,447743..447745,447782..447784,
447851..447853,448031..448033)
/gene="pgk"
/locus_tag="SERP0443"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238195"
misc_feature order(448235..448246,448787..448795)
/gene="pgk"
/locus_tag="SERP0443"
/note="hinge regions; other site"
/db_xref="CDD:238195"
misc_feature order(448349..448351,448556..448558,448628..448630,
448634..448636,448640..448651,448733..448741)
/gene="pgk"
/locus_tag="SERP0443"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:238195"
misc_feature 448736..448738
/gene="pgk"
/locus_tag="SERP0443"
/note="catalytic site [active]"
/db_xref="CDD:238195"
gene 448998..449759
/gene="tpiA"
/locus_tag="SERP0444"
/db_xref="GeneID:3242274"
CDS 448998..449759
/gene="tpiA"
/locus_tag="SERP0444"
/EC_number="5.3.1.1"
/note="Reversibly isomerizes the ketone sugar
dihydroxyacetone phosphate to the aldehyde sugar
glyceraldehyde-3-phosphate"
/codon_start=1
/transl_table=11
/product="triosephosphate isomerase"
/protein_id="YP_188037.1"
/db_xref="GI:57866429"
/db_xref="GeneID:3242274"
/translation="MRTPIIAGNWKMNKTVQEAKDFVNELPTLPDPKEVESVICAPTI
QLDALVTAVKDGKAKGLKIGAQNAYFEESGAYTGETSPVALSELGVKYVVIGHSERRD
YFHETDEEVNKKAHAIFNHGMTPIICVGESDEEREAGKANKIVGNQVKKAVEGLSDDQ
LKEVVIAYEPIWAIGTGKSSTSEDANEMCAHVRQTLADLSSQEVADATRIQYGGSVKP
NNIKEYMAQSDIDGALVGGASLKVEDFVQLLEGAK"
misc_feature 449007..449747
/gene="tpiA"
/locus_tag="SERP0444"
/note="Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually...; Region: TIM; cd00311"
/db_xref="CDD:238190"
misc_feature 449010..449753
/gene="tpiA"
/locus_tag="SERP0444"
/note="triosephosphate isomerase; Provisional; Region:
PRK14565"
/db_xref="CDD:237758"
misc_feature order(449022..449024,449028..449030,449286..449288,
449502..449504,449520..449522,449640..449642,
449697..449699,449703..449708)
/gene="tpiA"
/locus_tag="SERP0444"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238190"
misc_feature order(449022..449024,449031..449033,449124..449132,
449136..449138,449145..449147,449193..449195,
449247..449249,449256..449261,449292..449297)
/gene="tpiA"
/locus_tag="SERP0444"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238190"
misc_feature order(449028..449030,449286..449288,449502..449504)
/gene="tpiA"
/locus_tag="SERP0444"
/note="catalytic triad [active]"
/db_xref="CDD:238190"
gene 449762..451279
/gene="pgm"
/locus_tag="SERP0445"
/db_xref="GeneID:3241754"
CDS 449762..451279
/gene="pgm"
/locus_tag="SERP0445"
/EC_number="5.4.2.1"
/note="catalyzes the interconversion of 2-phosphoglycerate
and 3-phosphoglycerate"
/codon_start=1
/transl_table=11
/product="phosphoglyceromutase"
/protein_id="YP_188038.1"
/db_xref="GI:57866439"
/db_xref="GeneID:3241754"
/translation="MAKQPTALIILDGFANRESEHGNAVKQAHKPNFDRYYEKYPTTQ
IEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGEFFDNTVLNNAVK
HVKDNGSALHVFGLLSDGGVHSHYKHLFAILELAKKQGIDKVYVHAFLDGRDVDQKSA
LKYIEETEDKFKELGVGQFASVSGRYYAMDRDKRWDREERAYNAIRNFEGPTFTSAKA
GVEANYKNDVTDEFVEPFIVEGQNDGVNDGDAVIFYNFRPDRAAQLSEIFTNKAFDGF
KVEQVDNLFYATFTKYNDNVDAEIVFEKVDLNNTIGEVAQDNGLKQLRIAETEKYPHV
TYFMSGGRNEEFEGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELDKGDLDLILLN
FANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKIIDMGGHAIITADHGNSDQVLTDDD
QPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVKQPSEMTGESLIKH"
misc_feature 449762..451276
/gene="pgm"
/locus_tag="SERP0445"
/note="Phosphoglyceromutase [Carbohydrate transport and
metabolism]; Region: GpmI; COG0696"
/db_xref="CDD:31040"
misc_feature 449762..451273
/gene="pgm"
/locus_tag="SERP0445"
/note="phosphoglyceromutase; Provisional; Region:
PRK05434"
/db_xref="CDD:180079"
gene 451418..452722
/gene="eno"
/locus_tag="SERP0446"
/db_xref="GeneID:3241755"
CDS 451418..452722
/gene="eno"
/locus_tag="SERP0446"
/EC_number="4.2.1.11"
/note="enolase; catalyzes the formation of
phosphoenolpyruvate from 2-phospho-D-glycerate in
glycolysis"
/codon_start=1
/transl_table=11
/product="phosphopyruvate hydratase"
/protein_id="YP_188039.1"
/db_xref="GI:57866440"
/db_xref="GeneID:3241755"
/translation="MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTG
EHEAVELRDGDKSRYLGKGVTKAVENVNEMIAPEIVEGEFSVLDQVSIDKMMIQLDGT
HNKGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDA
PIAFQEFMILPVGAESFKESLRWGAEIFHNLKSILSERGLETAVGDEGGFAPRFEGTE
DAVETIIKAIEKAGYKPGEDVFLGFDCASSEFYENGVYDYTKFEGEHGAKRSAAEQVD
YLEELIGKYPIITIEDGMDENDWEGWKQLTDRIGDKVQLVGDDLFVTNTEILSKGIEQ
GIGNSILIKVNQIGTLTETFDAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQ
IKTGSLSRTDRIAKYNQLLRIEDELYETAKFEGIKSFYNLDK"
misc_feature 451418..452713
/gene="eno"
/locus_tag="SERP0446"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:234617"
misc_feature 451433..452665
/gene="eno"
/locus_tag="SERP0446"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:239429"
misc_feature order(451439..451441,451445..451471,451481..451483,
451517..451519,451889..451897,451958..451963,
451970..451975,451982..451987,452024..452029,
452048..452050,452054..452056,452540..452548,
452615..452623,452627..452632,452639..452641,
452648..452653,452660..452662)
/gene="eno"
/locus_tag="SERP0446"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239429"
misc_feature order(451541..451543,452147..452149,452288..452290,
452369..452371)
/gene="eno"
/locus_tag="SERP0446"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:239429"
misc_feature order(451886..451888,452036..452038,452444..452446,
452528..452536,452597..452599)
/gene="eno"
/locus_tag="SERP0446"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:239429"
gene 452888..453346
/locus_tag="SERP0447"
/db_xref="GeneID:3241756"
CDS 452888..453346
/locus_tag="SERP0447"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188040.1"
/db_xref="GI:57866441"
/db_xref="GeneID:3241756"
/translation="MTDSNAKEIRTGRLIAISSLVFCILLIIHHFIVLDESTAKSILS
LAGQKTSDTAVKNILNSDRYTGIMYILAYLAGTVAFWNRHPYLWWFMFAVYISNALFT
LVNLYLFIQGILDVKNVLAVLPILIVVIGSIILAIYMLVVSITRKSTFNR"
gene 453415..453648
/gene="secG"
/locus_tag="SERP0448"
/db_xref="GeneID:3241757"
CDS 453415..453648
/gene="secG"
/locus_tag="SERP0448"
/note="identified by match to protein family HMM PF03840;
match to protein family HMM TIGR00810"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecG"
/protein_id="YP_188041.1"
/db_xref="GI:57866442"
/db_xref="GeneID:3241757"
/translation="MHTLIIVLLIIDCIALVTVVLLQEGKSNGLSGAISGGAEQLFGK
QKQRGVDLFLHRLTIILAILFFVLMFCISYLGM"
misc_feature 453415..453639
/gene="secG"
/locus_tag="SERP0448"
/note="Preprotein translocase subunit SecG [Intracellular
trafficking and secretion]; Region: SecG; COG1314"
/db_xref="CDD:224233"
gene 453949..454689
/gene="est"
/locus_tag="SERP0449"
/db_xref="GeneID:3241758"
CDS 453949..454689
/gene="est"
/locus_tag="SERP0449"
/EC_number="3.1.1.1"
/note="identified by similarity to EGAD:18058"
/codon_start=1
/transl_table=11
/product="carboxylesterase"
/protein_id="YP_188042.1"
/db_xref="GI:57866443"
/db_xref="GeneID:3241758"
/translation="MQIKLPKPFFFEEGKRAVLLLHGFTGNSADVRQLGRYLQKKGYT
SYAPQYEGHAAPPEEILKSSPFVWFKDVLDGYDYLVDQGYEEIAVAGLSLGGAFALKL
SLNRDVKGIITMCAPMENKTEGSIYEGFLEYARNFKKYEGKDQQTIDQEMEQFHPTET
LRELSDTLNGVKEHVDEVIDPILVVQAEQDTMIDPQSANYIYNHVDSDEKEIKWYQHS
GHVITIDKEKEKVFEDVYQFLESLEWTE"
misc_feature 453949..454671
/gene="est"
/locus_tag="SERP0449"
/note="Esterase/lipase [General function prediction only];
Region: COG1647"
/db_xref="CDD:224561"
misc_feature 453982..>454107
/gene="est"
/locus_tag="SERP0449"
/note="Putative lysophospholipase; Region: Hydrolase_4;
pfam12146"
/db_xref="CDD:221442"
gene 454724..457102
/locus_tag="SERP0450"
/db_xref="GeneID:3241759"
CDS 454724..457102
/locus_tag="SERP0450"
/note="identified by match to protein family HMM PF00575;
match to protein family HMM PF00773; match to protein
family HMM TIGR00358"
/codon_start=1
/transl_table=11
/product="VacB/RNase II family exoribonuclease"
/protein_id="YP_188043.1"
/db_xref="GI:57866444"
/db_xref="GeneID:3241759"
/translation="MNLKQSIEEMIKQPDYEPMSVSDFQDALGLNSADSFRDLIKILV
ELEQSGLIERTRTDRYQRKQSNKTNSKLIKGTLSQNKKGFAFLRPEDDEMDDIFIPPT
KINRALDGDTVIVEIQKSRGEHKGKIEGEVKSIEKHSVTQVVGTYSEAKHFGFVLPDD
KRIMQDIFIPKGQNLGAVDGHKVLVQITKYADSTDNPEGHVSAILGHKNDPGVDILSI
IYQHGIEIEFPDDVLQEAEEVPDVIEPSEIEGRRDLRDELTITIDGADAKDLDDAIAV
KKLKNGNTELTVSIADVSYYVKEGSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICS
LNPEEDRLTLSCRMEINERGEVVKHEIFDSVIHSNYRMTYDAVNKIITDQDSEIRSQY
KDLTPMLDLAQDLSNRLIHMRKRRGEIDFDINEAKVLVNDEGIPTEVLMRERGEGERL
IESFMLAANETVAEHFNKLEVPFIYRVHEQPKSDRLRQFFDFITNFGIMIKGTGEDIH
PTTLQSIQEEVEGRPEQMVISTMMLRSMQQAHYDDVNLGHFGLSAEYYTHFTSPIRRY
PDLTVHRLIRKYLIENSMDKKEIRHWEETLPELAEHTSQRERRAIEAERDTDELKKAE
YMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHIANMTDDYYHFDERQMALIGERQ
AKVFRIGDTVKVKVTHVDVEERMIDFQIVGMPLPKKTSSQRPAREKTIQAKTRGKSLD
HTKSDRNGKGKKKKRKQRKGKNARKKDKQGNTHHKPFYKDKSVKKKSRRKKK"
misc_feature 454724..456856
/locus_tag="SERP0450"
/note="ribonuclease R; Region: RNase_R; TIGR02063"
/db_xref="CDD:233703"
misc_feature 454946..455128
/locus_tag="SERP0450"
/note="Ribonuclease B OB domain; Region: OB_RNB;
pfam08206"
/db_xref="CDD:203875"
misc_feature 455171..>455299
/locus_tag="SERP0450"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
misc_feature 455474..456460
/locus_tag="SERP0450"
/note="RNB domain; Region: RNB; pfam00773"
/db_xref="CDD:216112"
misc_feature 456611..456856
/locus_tag="SERP0450"
/note="S1_RNase_R: RNase R C-terminal S1 domain. RNase R
is a processive 3' to 5' exoribonuclease, which is a
homolog of RNase II. RNase R degrades RNA with secondary
structure having a 3' overhang of at least 7 nucleotides.
RNase R and PNPase...; Region: S1_RNase_R; cd04471"
/db_xref="CDD:239917"
misc_feature order(456638..456640,456662..456664,456692..456694,
456698..456700)
/locus_tag="SERP0450"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239917"
gene 457127..457597
/gene="smpB"
/locus_tag="SERP0451"
/db_xref="GeneID:3241760"
CDS 457127..457597
/gene="smpB"
/locus_tag="SERP0451"
/note="binds to ssrA RNA (tmRNA) and is required for its
successful binding to ribosomes; also appears to function
in the trans-translation step by promoting accommodation
of tmRNA into the ribosomal A site; SmpB protects the
tmRNA from RNase R degradation in Caulobacter crescentus;
both the tmRNA and SmpB are regulated in cell
cycle-dependent manner; functions in release of stalled
ribosomes from damaged mRNAs and targeting proteins for
degradation"
/codon_start=1
/transl_table=11
/product="SsrA-binding protein"
/protein_id="YP_188044.1"
/db_xref="GI:57866445"
/db_xref="GeneID:3241760"
/translation="MAKKKSKSPGTLAENRKARHDYNIEDTIEAGIALRGTEIKSIRR
GSANLKDSFAQVRRGEMYLNNMHIAPYEEGNRFNHDPLRTRKLLLHKKEIQKLGERTR
EIGYSIIPLKLYLKHGQCKVLLGVARGKKKYDKRQALKEKAVKRDIDRAVKARY"
misc_feature 457169..457516
/gene="smpB"
/locus_tag="SERP0451"
/note="Small protein B (SmpB) is a component of the
trans-translation system in prokaryotes for releasing
stalled ribosome from damaged messenger RNAs; Region:
SmpB; cd09294"
/db_xref="CDD:187755"
misc_feature order(457211..457228,457232..457237,457241..457246,
457253..457255,457304..457306,457388..457405,
457487..457489)
/gene="smpB"
/locus_tag="SERP0451"
/note="SmpB-tmRNA interface; other site"
/db_xref="CDD:187755"
gene 457703..458061
/locus_tag="SERP_SetmRNA1"
/db_xref="GeneID:3240469"
misc_RNA 457703..458061
/locus_tag="SERP_SetmRNA1"
/product="sRNA"
/db_xref="GeneID:3240469"
gene complement(458147..458377)
/locus_tag="SERP0452"
/db_xref="GeneID:3241761"
CDS complement(458147..458377)
/locus_tag="SERP0452"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188045.1"
/db_xref="GI:57866446"
/db_xref="GeneID:3241761"
/translation="MKIFNWNIINETSFDITCDYFSKDIIIVDKATNRQLVYFKYNIK
EDIYTEDEKVHKVITQINTMDKSITIYDNIAS"
gene complement(458390..458887)
/locus_tag="SERP0453"
/note="site-specific recombinase, phage integrase family,
degenerate; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to OMNI:NTL02SA0776"
/pseudo
/db_xref="GeneID:3240635"
gene 458978..459166
/locus_tag="SERP0454"
/db_xref="GeneID:3240636"
CDS 458978..459166
/locus_tag="SERP0454"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188046.1"
/db_xref="GI:57866455"
/db_xref="GeneID:3240636"
/translation="MKLLFDSISKLSINETVGDGAEINDVVNKRDEYKESIRYYNNHL
VLVKYNEKSICKLKYLRN"
gene complement(459310..459852)
/locus_tag="SERP0455"
/db_xref="GeneID:3240637"
CDS complement(459310..459852)
/locus_tag="SERP0455"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_188047.1"
/db_xref="GI:57866456"
/db_xref="GeneID:3240637"
/translation="MKLKLLGTLALSSIILTACGQENVKKTESNPKEEQNKTDNMQTN
GSVTNSNSNQKQKTAQKQISAQEAEQIVSNYYINKGINKQQVLEFKTNIDRSNANEYY
VEHLVRDAAGTPIKFCAVVNKSTGEVINRFNDMNEEEMKEFEEFKKRSPKYHNSGEEK
NKMQENSSSSEQQEVHNSVI"
gene 460587..460757
/locus_tag="SERP0456"
/db_xref="GeneID:3241166"
CDS 460587..460757
/locus_tag="SERP0456"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188048.1"
/db_xref="GI:57866338"
/db_xref="GeneID:3241166"
/translation="MSLKEIWKVLINKKWQTEEICYLILYIFLASIFTTPLFGIPLGV
LAYLYLNEEILK"
gene complement(461015..461248)
/locus_tag="SERP0457"
/db_xref="GeneID:3241167"
CDS complement(461015..461248)
/locus_tag="SERP0457"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188049.1"
/db_xref="GI:57866339"
/db_xref="GeneID:3241167"
/translation="MKFREWTITINGKGPINVVANEDTLLILQKYQHVEVALKIDNET
VQVKSLGYNEDIIINHNTKEITINVTNFLEDDE"
gene complement(461861..463168)
/locus_tag="SERP0458"
/db_xref="GeneID:3241168"
CDS complement(461861..463168)
/locus_tag="SERP0458"
/note="identified by match to protein family HMM PF02386"
/codon_start=1
/transl_table=11
/product="sodium transport family protein"
/protein_id="YP_188050.1"
/db_xref="GI:57866340"
/db_xref="GeneID:3241168"
/translation="MSKVNKPLYFYLMLFLLTTLIGAFLLYLPYTGKKPINFIDALFV
ASSAFTVTGLSPVDVGTQFNIFGEIIILLLIQIGGLGIVTVAMLTLIFLNKKISINNR
ILFMITWNIDEPGGVIKLIKHLAIYSIATELFGTLCLCLSFIPKFGIGKGLFLSLFTS
VSAFNNAGFALFKNNLIDFSNDPVIIITIPILIILGGLGHLVVVDLWNAKSFRKLSLH
SKLVLTTTGLLILIGTVFFFLLENQNSMLHMGLIEKIGNAFFQSVTTRTAGFNTIDVG
NIKTPTALLLMALMFIGGAPLSAAGGIKVTTFVIATIAIFNTIRKEKNNSIFNREISE
RYIQLSFVTILISIAFIGMVTFILTIINSNIPLIKILFEVVSAFGTVGLTMDLTSEYY
NWTEFIIIIVMLCGKIGLLNISRALVPPKDPKNYRYTKGHIHL"
misc_feature complement(461948..463096)
/locus_tag="SERP0458"
/note="potassium uptake protein, TrkH family; Region:
2a38; TIGR00933"
/db_xref="CDD:233196"
misc_feature complement(461876..463066)
/locus_tag="SERP0458"
/note="Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: TrkG;
COG0168"
/db_xref="CDD:223246"
gene complement(463194..463289)
/locus_tag="SERP0459"
/db_xref="GeneID:3242518"
CDS complement(463194..463289)
/locus_tag="SERP0459"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188051.1"
/db_xref="GI:57866348"
/db_xref="GeneID:3242518"
/translation="MVILIVNSKYLKSLTSYYTLKFTYDIIIFVI"
gene 463394..463738
/locus_tag="SERP0460"
/db_xref="GeneID:3242519"
CDS 463394..463738
/locus_tag="SERP0460"
/note="identified by similarity to OMNI:NTL02ML4319"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188052.1"
/db_xref="GI:57866349"
/db_xref="GeneID:3242519"
/translation="MRSVIKLENTFIFIITIAVYVKLEFSIWLFLLLLLVPDIFMLGY
VINRKTGSYVYNIGHTYITPIIIALLYLYIDERLLLQIALIWLAHISMDRTLGFGLKY
SSDTDKTIIQKM"
misc_feature 463394..463732
/locus_tag="SERP0460"
/note="Domain of unknown function (DUF4260); Region:
DUF4260; pfam14079"
/db_xref="CDD:206249"
gene complement(463958..464374)
/locus_tag="SERP0461"
/db_xref="GeneID:3242520"
CDS complement(463958..464374)
/locus_tag="SERP0461"
/codon_start=1
/transl_table=11
/product="glyoxalase"
/protein_id="YP_188053.1"
/db_xref="GI:57866350"
/db_xref="GeneID:3242520"
/translation="MELYSMPMFNKFLVNDIDKSSEWYQENLGFKSIFKFKNEQNQIL
MEHLRLAKYQDLMLISGKQFEVGNAVYTNILVPNIRILKQRIPSQYIVEDLEEKPWNS
IEMTIKDLDNHLITLTQSNIKNEEFNALMQHTSKTF"
misc_feature complement(464024..464341)
/locus_tag="SERP0461"
/note="Glyoxalase-like domain; Region: Glyoxalase_2;
pfam12681"
/db_xref="CDD:221708"
misc_feature complement(order(464027..464029,464033..464035,
464057..464059,464168..464170,464204..464206,
464336..464338))
/locus_tag="SERP0461"
/note="active site"
/db_xref="CDD:211348"
misc_feature complement(464030..464335)
/locus_tag="SERP0461"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:216182"
gene complement(465190..465366)
/locus_tag="SERP0462"
/db_xref="GeneID:3242521"
CDS complement(465190..465366)
/locus_tag="SERP0462"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188054.1"
/db_xref="GI:57866351"
/db_xref="GeneID:3242521"
/translation="MNINTVTYDSENSQNTIQTQEQAIDESNNSKDTQYNQNSNTTST
IRNNNLTTIQITNI"
gene complement(465874..466377)
/locus_tag="SERP0463"
/db_xref="GeneID:3242522"
CDS complement(465874..466377)
/locus_tag="SERP0463"
/note="identified by similarity to OMNI:NTL01SA0184"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188055.1"
/db_xref="GI:57866352"
/db_xref="GeneID:3242522"
/translation="MKHQKNQSRFKLLIAGIIAGLLSGVVKLGWEVMFPPRTPSRDAT
NPPQQLLQLLGIPSNITHLTYNFSEHALPWISFIVHYSFSIAIAIIYIYIAKKYTKIT
LGYGALFGIVIWIVFHLILMPIMHVVPNAFDQPFSEHLSEFFGHIVWMMVIEMVRRYF
YNIQLNK"
misc_feature complement(465910..466311)
/locus_tag="SERP0463"
/note="Protein of unknown function (DUF1440); Region:
DUF1440; pfam07274"
/db_xref="CDD:219359"
gene 466549..466674
/locus_tag="SERP0464"
/db_xref="GeneID:3242523"
CDS 466549..466674
/locus_tag="SERP0464"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188056.1"
/db_xref="GI:57866353"
/db_xref="GeneID:3242523"
/translation="MSYKKLEKLQTNTHLSYLNGIKGIITLKLNRRKKMEERHGK"
gene 466664..467605
/locus_tag="SERP0465"
/db_xref="GeneID:3242524"
CDS 466664..467605
/locus_tag="SERP0465"
/note="identified by match to protein family HMM PF01545;
match to protein family HMM TIGR01297"
/codon_start=1
/transl_table=11
/product="cation efflux family protein"
/protein_id="YP_188057.1"
/db_xref="GI:57866354"
/db_xref="GeneID:3242524"
/translation="MENKPDYFHHIEHRKFQSSSKITLWLSLVITMIFTVVEFVGGIV
SNSLALLSDSFHMLSDVLALGLSMVAIYFSSKPPTKNYTYGFLRLEIIVAFLNGLALI
VISLGIMYEGIMRIIHPRPVESGIMILIAFIGLIANIVLTIILMISLKKENNINIQSA
LWHFIGDLLNSLGIIVAFVLIHFTGWNIVDPIISILISLIILRGGYKIIKNASKVLME
RVPDRYDTDEIMGAMKDVEGVIDIHEFHLWSVTTNQSSLSAHVVLSDDYIKSPYATIN
KVSDLLKTQYGLEHVTLQIENINLNHLDEEYFKQLQE"
misc_feature 466682..467560
/locus_tag="SERP0465"
/note="Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism]; Region: CzcD; COG1230"
/db_xref="CDD:224151"
misc_feature 466724..>467395
/locus_tag="SERP0465"
/note="Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism]; Region: MMT1; COG0053"
/db_xref="CDD:223131"
gene 468971..469171
/locus_tag="SERP0466"
/db_xref="GeneID:3242396"
CDS 468971..469171
/locus_tag="SERP0466"
/note="identified by match to protein family HMM PF00313"
/codon_start=1
/transl_table=11
/product="CSD family cold shock protein"
/protein_id="YP_188058.1"
/db_xref="GI:57866355"
/db_xref="GeneID:3242396"
/translation="MNNGTVKWFNAEKGFGFIERENGGDVFVHFSAIVEDGYKSLEEG
QSVEFDIVEGERGEQAANVVKM"
misc_feature 468980..469165
/locus_tag="SERP0466"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box...; Region:
CSP_CDS; cd04458"
/db_xref="CDD:239905"
misc_feature order(468992..468994,469019..469021,469049..469051,
469136..469138)
/locus_tag="SERP0466"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:239905"
misc_feature order(469010..469030,469046..469057)
/locus_tag="SERP0466"
/note="RNA-binding motif; other site"
/db_xref="CDD:239905"
gene complement(469792..470016)
/locus_tag="SERP0467"
/db_xref="GeneID:3242397"
CDS complement(469792..470016)
/locus_tag="SERP0467"
/note="identified by similarity to OMNI:SA0862"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188059.1"
/db_xref="GI:57866356"
/db_xref="GeneID:3242397"
/translation="MKDWTINNHSKRQLIIQSNHDDISIIEPLRNGSFKILAEFNALN
TDYIQVYDHTLVVSIHEKEISVFDRSSQSI"
gene complement(470040..470324)
/locus_tag="SERP0468"
/db_xref="GeneID:3242336"
CDS complement(470040..470324)
/locus_tag="SERP0468"
/note="identified by similarity to GP:14246587"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188060.1"
/db_xref="GI:57866365"
/db_xref="GeneID:3242336"
/translation="MENLTKEQKYTIAKFYKLYMERSNAGQPEEEANHFKDSVTAQDD
YFCDRKYEDFIHNCKVLINEGYLDGEVEDNKIYNIQVTTKAFTEIERSFG"
gene complement(470423..471169)
/locus_tag="SERP0469"
/db_xref="GeneID:3242337"
CDS complement(470423..471169)
/locus_tag="SERP0469"
/note="identified by similarity to EGAD:108826"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188061.1"
/db_xref="GI:57866366"
/db_xref="GeneID:3242337"
/translation="MRDKDNQHSRLYYIILTIVIIAICVVVVILFNTLKTNRSHSTDR
YADFTELKKDTIKNKDWRIKTKHRKNKDILVTAIHGGGIEPGTTEIARRISNVGKYNF
YTFEGLRKSNNDQLHVTSTHFNEPILDKLLKNTKETLSIHGFSGDDPIVYIGGKDKEM
SHSITKELRKKDFTVKESPNKIDAKSSDNIANKNESNSGVQLELTTALRKQFFKHYKL
DRHTRSDSDKYTKDFYKFANAVQKGIEKVN"
misc_feature complement(470462..471037)
/locus_tag="SERP0469"
/note="Protein of unknown function (DUF867); Region:
DUF867; pfam05908"
/db_xref="CDD:218804"
gene 471450..471686
/locus_tag="SERP0470"
/db_xref="GeneID:3242338"
CDS 471450..471686
/locus_tag="SERP0470"
/codon_start=1
/transl_table=11
/product="flagellar hook-length control protein-related
protein"
/protein_id="YP_188062.1"
/db_xref="GI:57866367"
/db_xref="GeneID:3242338"
/translation="MMNKNLLKKYLNDDSFKSVVVVIGNKRIVLENDIHVDYENEVII
YPCKNCTRIIPFSSISYLELIDKQDQFINYFKEG"
gene complement(471746..472300)
/locus_tag="SERP0471"
/db_xref="GeneID:3242339"
CDS complement(471746..472300)
/locus_tag="SERP0471"
/note="identified by similarity to OMNI:NTL01SA0772"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188063.1"
/db_xref="GI:57866368"
/db_xref="GeneID:3242339"
/translation="MKLISKSIYLSFIFFIFSLMLFTNQSFANDNKRFQLKPGDIIVT
KGPVLNGFFGHCSLAIDHDTVLQIEGPGDKPMTEDFESYRDRYGKGKNEWIKVYRCSH
PNAGTKAAQWAKKHYENSDSEYLVTFNLKSETFTYCTKIIYQAYKYGVDKNSVSDHGL
YIISPYALTDNFTDEYKLKLVKTY"
misc_feature complement(471773..>472216)
/locus_tag="SERP0471"
/note="Orthopoxvirus protein of unknown function (DUF830);
Region: DUF830; cl13998"
/db_xref="CDD:209853"
gene complement(472490..472678)
/locus_tag="SERP0472"
/db_xref="GeneID:3242340"
CDS complement(472490..472678)
/locus_tag="SERP0472"
/note="identified by similarity to OMNI:NTL01SA0773"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188064.1"
/db_xref="GI:57866369"
/db_xref="GeneID:3242340"
/translation="MSLHFQILLWLSILFIIAGTILLVTMLKTKKEERKESYLGFTVI
FLIFGFAILIYTFIFGIL"
misc_feature complement(<472505..472591)
/locus_tag="SERP0472"
/note="multidrug efflux system protein EmrA; Provisional;
Region: PRK15136"
/db_xref="CDD:185090"
gene 473071..473208
/locus_tag="SERP0473"
/db_xref="GeneID:3242341"
CDS 473071..473208
/locus_tag="SERP0473"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188065.1"
/db_xref="GI:57866370"
/db_xref="GeneID:3242341"
/translation="MRHTHHCRFYGENKKISNTLLYVNQFNVIVIFKPLTTVISSQEQ
K"
gene 473369..473572
/locus_tag="SERP0474"
/db_xref="GeneID:3242342"
CDS 473369..473572
/locus_tag="SERP0474"
/note="identified by similarity to OMNI:NTL01SA0775"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188066.1"
/db_xref="GI:57866371"
/db_xref="GeneID:3242342"
/translation="MSFYDFILGFINDDTPLGHLAQYIFNDACFPKEEKNNNSIRTYV
LLNYNDRQLIESTNRAISLYQLI"
misc_feature 473426..473560
/locus_tag="SERP0474"
/note="Protein of unknown function (DUF1250); Region:
DUF1250; pfam06855"
/db_xref="CDD:203536"
gene complement(473564..473800)
/locus_tag="SERP0475"
/db_xref="GeneID:3242343"
CDS complement(473564..473800)
/locus_tag="SERP0475"
/note="identified by similarity to OMNI:NTL01SA0776"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188067.1"
/db_xref="GI:57866372"
/db_xref="GeneID:3242343"
/translation="MSTHSQCNYVNPNSISLDWECLIISKTDMLLDGVPKELINTWLD
QNVIEPFCVRNNEINFKTKDVWNALKTHNWYYSN"
gene 474014..474601
/locus_tag="SERP0476"
/db_xref="GeneID:3242617"
CDS 474014..474601
/locus_tag="SERP0476"
/note="identified by match to protein family HMM PF00300"
/codon_start=1
/transl_table=11
/product="phosphoglycerate mutase"
/protein_id="YP_188068.1"
/db_xref="GI:57866381"
/db_xref="GeneID:3242617"
/translation="MVKTLYLMRHGQTVFNLKGKIQGASDSPLTALGVQQANAAQQYF
KTKNIHFDYLYSSPQQRACDTLENAVPNQQYWCVKDLKEWGFGLFEGESIELLRAIKQ
PRYLYGDAVVPFGGESRSEVEHRVYRALYEMMDTTDGETILAVSHGSTIGLFVRNILG
YDKGSKFEIGNCNIVKFEYDGEEFIFKDLINPIKK"
misc_feature 474023..474559
/locus_tag="SERP0476"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature order(474038..474043,474194..474196,474452..474457)
/locus_tag="SERP0476"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene complement(474872..475372)
/locus_tag="SERP0477"
/db_xref="GeneID:3242618"
CDS complement(474872..475372)
/locus_tag="SERP0477"
/note="identified by match to protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_188069.1"
/db_xref="GI:57866382"
/db_xref="GeneID:3242618"
/translation="MNNIRLLNQNDLDSYIELMKFGHHNYEWDRYYLENVSIDRLKTI
LSNHTDYWNIFGAFEDDELVATCTLKQMNYVGKCHKAILENNFVKNNDEIVNRELINH
IIQYAKEQNIETLMIAIASNNISAKVFFSSIGFENLAFEKNASKIGNEYFDENWLIYS
TTESSD"
misc_feature complement(<475166..475366)
/locus_tag="SERP0477"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cl17182"
/db_xref="CDD:247736"
misc_feature complement(474905..475363)
/locus_tag="SERP0477"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_4; pfam13420"
/db_xref="CDD:222116"
misc_feature complement(474965..475204)
/locus_tag="SERP0477"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:216007"
misc_feature complement(475109..475117)
/locus_tag="SERP0477"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 475958..476113
/locus_tag="SERP0478"
/db_xref="GeneID:3242619"
CDS 475958..476113
/locus_tag="SERP0478"
/note="identified by similarity to GP:8918792"
/codon_start=1
/transl_table=11
/product="truncated IS1272 transposase"
/protein_id="YP_188070.1"
/db_xref="GI:57866383"
/db_xref="GeneID:3242619"
/translation="MYKEYNLTQHTLPMETSVLIPTNDISRHVNDIVETIPDTEFDEF
RHHCGLI"
gene 476098..476253
/locus_tag="SERP0479"
/db_xref="GeneID:3242620"
CDS 476098..476253
/locus_tag="SERP0479"
/note="identified by similarity to OMNI:SA0036"
/codon_start=1
/transl_table=11
/product="truncated IS1272 transposase"
/protein_id="YP_188071.1"
/db_xref="GI:57866384"
/db_xref="GeneID:3242620"
/translation="MWLNIRKVTAQRAENNQKNYKKDNFYIFSIEIVFFTYLEPFCPS
LKKPPTI"
gene complement(476297..476719)
/locus_tag="SERP0480"
/db_xref="GeneID:3240764"
CDS complement(476297..476719)
/locus_tag="SERP0480"
/note="identified by match to protein family HMM PF02566"
/codon_start=1
/transl_table=11
/product="OsmC/Ohr family protein"
/protein_id="YP_188072.1"
/db_xref="GI:57866385"
/db_xref="GeneID:3240764"
/translation="MAVQYETKATNVGGRKGHVHTDDNAINVDVLPPQQADGKATNPE
QLFAAGYASCFNGAFDLILKQNKVRDAEPEVTLTVRLEDDPDAESPKLSVDIHAKVKN
VLSQEDAEKYLQDAHDFCPYSKATRGNIDVNLNVEVVE"
misc_feature complement(476312..476707)
/locus_tag="SERP0480"
/note="OsmC-like protein; Region: OsmC; cl00767"
/db_xref="CDD:214091"
gene 476880..477596
/gene="aroD"
/locus_tag="SERP0481"
/db_xref="GeneID:3240765"
CDS 476880..477596
/gene="aroD"
/locus_tag="SERP0481"
/EC_number="4.2.1.10"
/note="catalyzes the dehydration of 3-dehydroquinate to
form 3-dehydroshikimate in aromatic amino acid
biosynthesis"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate dehydratase"
/protein_id="YP_188073.1"
/db_xref="GI:57866386"
/db_xref="GeneID:3240765"
/translation="MTHVDIAATIAPEDKLSKTLLKDIKVNEESIDIIELRIDQWPSF
NKALLNEVIKQLKIFHLKILVTYRTSVQGGKGAVNEQEYLNILGELIECPQFDMIDIE
WSSAVKIEKYTHLVQRAQQKGLEVVLSHHNFQETPALDELKFIYFKMQKLNPEYLKLA
VMPKCQEDVLHLLEAMSLTAKHTTCRIVGISMSSLGKVSRIAQGVFGGTLSYGCIEEP
QAPGQIHVSKLKSMVSFYED"
misc_feature 476895..477593
/gene="aroD"
/locus_tag="SERP0481"
/note="3-dehydroquinate dehydratase [Amino acid transport
and metabolism]; Region: AroD; COG0710"
/db_xref="CDD:31054"
misc_feature 476895..477584
/gene="aroD"
/locus_tag="SERP0481"
/note="Type I 3-dehydroquinase, (3-dehydroquinate
dehydratase or DHQase); Region: DHQase_I; cd00502"
/db_xref="CDD:188633"
misc_feature order(476904..476906,476982..476984,476988..476990,
477081..477083,477270..477272,477351..477353,
477477..477479,477534..477539,477546..477548)
/gene="aroD"
/locus_tag="SERP0481"
/note="active site"
/db_xref="CDD:188633"
misc_feature 477351..477353
/gene="aroD"
/locus_tag="SERP0481"
/note="catalytic residue [active]"
/db_xref="CDD:188633"
misc_feature order(477387..477389,477399..477401,477408..477410,
477480..477485,477495..477497,477561..477563,
477573..477575,477582..477584)
/gene="aroD"
/locus_tag="SERP0481"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188633"
gene 477677..478219
/locus_tag="SERP0482"
/db_xref="GeneID:3240766"
CDS 477677..478219
/locus_tag="SERP0482"
/note="identified by match to protein family HMM PF00881"
/codon_start=1
/transl_table=11
/product="nitroreductase"
/protein_id="YP_188074.1"
/db_xref="GI:57866387"
/db_xref="GeneID:3240766"
/translation="MELQEAISNRRSVKKFKHDMVVDDQTVYDAIYKATDAPNHGMRE
PWRLVHISKDKLGDFSRDITRFAFPDSPDKREDHFHAVTNLGGMLLLILKDDPRQRQS
RENYFAFGAFAQNLMLLLYEAGIGTCWKSPQYIFDPKIRKALGVKDNEILAGFLYLTD
LEEVPTKAKRKNKNLITEFE"
misc_feature 477689..478150
/locus_tag="SERP0482"
/note="Nitroreductase-like family which includes NADH
oxidase and arsenite oxidiase. NADH oxidase catalyses the
oxidation of NAD(P)H and accepts a wide broad range of
compounds as electron acceptors, such as nitrocompound.
Arsenite oxidase in a...; Region: Arsenite_oxidase;
cd02135"
/db_xref="CDD:239050"
misc_feature order(477707..477709,477713..477715,477719..477721,
477797..477799,478067..478072)
/locus_tag="SERP0482"
/note="putative FMN binding site [chemical binding]; other
site"
/db_xref="CDD:239050"
gene complement(478402..478725)
/locus_tag="SERP0483"
/db_xref="GeneID:3240767"
CDS complement(478402..478725)
/locus_tag="SERP0483"
/note="identified by match to protein family HMM PF00085"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_188075.1"
/db_xref="GI:57866388"
/db_xref="GeneID:3240767"
/translation="MKNIHQTEEFNSTIGSTDPVIIKFEADWCPDCKAMDMWIDPIVE
KYNNYQWYVVDRDELEDVTTENDVMGIPSILIFQNGKKLAHLHSANAKSPEQVESFLT
EHLDQ"
misc_feature complement(478423..478704)
/locus_tag="SERP0483"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:239245"
misc_feature complement(order(478630..478632,478639..478641))
/locus_tag="SERP0483"
/note="catalytic residues [active]"
/db_xref="CDD:239245"
gene 478868..479221
/locus_tag="SERP0484"
/db_xref="GeneID:3241070"
CDS 478868..479221
/locus_tag="SERP0484"
/note="identified by match to protein family HMM PF03960;
match to protein family HMM TIGR01617"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_188076.1"
/db_xref="GI:57866397"
/db_xref="GeneID:3241070"
/translation="MIKFYQYPKCTTCKKAAKFLDEHDVNYESIDIVQHTPTKKEFKN
IVDKTGVNINKLFNTHGIKYRELNLKEKLKNMSDDEKLELLASDGMLVKRPLAISGNH
LTLGFKENEYQHQWL"
misc_feature 478871..479203
/locus_tag="SERP0484"
/note="Arsenate Reductase (ArsC) family, unknown
subfamily; uncharacterized proteins containing a CXXC
motif with similarity to thioredoxin (TRX)-fold arsenic
reductases, ArsC. Proteins containing a redox active CXXC
motif like TRX and glutaredoxin (GRX)...; Region:
ArsC_like; cd03036"
/db_xref="CDD:239334"
misc_feature 478880..479206
/locus_tag="SERP0484"
/note="ArsC family; Region: ArsC; pfam03960"
/db_xref="CDD:202832"
misc_feature order(478895..478897,479039..479041,479147..479149,
479186..479188)
/locus_tag="SERP0484"
/note="putative ArsC-like catalytic residues; other site"
/db_xref="CDD:239334"
misc_feature order(478895..478897,478904..478906)
/locus_tag="SERP0484"
/note="putative TRX-like catalytic residues [active]"
/db_xref="CDD:239334"
gene 479395..479775
/gene="gcvH"
/locus_tag="SERP0485"
/db_xref="GeneID:3241071"
CDS 479395..479775
/gene="gcvH"
/locus_tag="SERP0485"
/note="part of multienzyme complex composed of H, L, P,
and T proteins which catalyzes oxidation of glycine to
yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a
reduced pyridine nucleotide; protein H is involved in
transfer of methylamine group from the P to T protein;
covalently bound to a lipoyl cofactor"
/codon_start=1
/transl_table=11
/product="glycine cleavage system protein H"
/protein_id="YP_188077.1"
/db_xref="GI:57866398"
/db_xref="GeneID:3241071 