LOCUS NC_003037 1354226 bp DNA circular BCT 21-DEC-2012
DEFINITION Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence.
ACCESSION NC_003037
VERSION NC_003037.1 GI:16262453
DBLINK Project: 57603
BioProject: PRJNA57603
KEYWORDS .
SOURCE Sinorhizobium meliloti 1021
ORGANISM Sinorhizobium meliloti 1021
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 1354226)
AUTHORS Barnett,M.J., Fisher,R.F., Jones,T., Komp,C., Abola,A.P.,
Barloy-Hubler,F., Bowser,L., Capela,D., Galibert,F., Gouzy,J.,
Gurjal,M., Hong,A., Huizar,L., Hyman,R.W., Kahn,D., Kahn,M.L.,
Kalman,S., Keating,D.H., Palm,C., Peck,M.C., Surzycki,R.,
Wells,D.H., Yeh,K.-C., Davis,R.W., Federspiel,N.A. and Long,S.R.
TITLE Nucleotide sequence and predicted functions of the entire
Sinorhizobium meliloti pSymA megaplasmid
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 98 (17), 9883-9888 (2001)
PUBMED 11481432
REFERENCE 2 (bases 1 to 1354226)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1354226)
CONSRTM NCBI Microbial Genomes Annotation Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE006469.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1354226
/organism="Sinorhizobium meliloti 1021"
/mol_type="genomic DNA"
/strain="1021"
/db_xref="taxon:266834"
/plasmid="pSymA"
gene 1353..4457
/gene="fdoG"
/locus_tag="SMa0002"
/db_xref="GeneID:1235225"
CDS 1353..4457
/gene="fdoG"
/locus_tag="SMa0002"
/EC_number="1.2.1.2"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/codon_start=1
/transl_except=(pos:1965..1967,aa:Sec)
/transl_table=11
/product="formate dehydrogenase subunit alpha"
/protein_id="NP_435247.1"
/db_xref="GI:16262454"
/db_xref="GeneID:1235225"
/translation="MEAVPMNVDLSRRSFLKLAGAGAAATSLGAMGFGEAEAAVVAHV
RPHKLTTTTETRNTCPYCSVACGVIIYSKGDLRKGEAADIIHIEGDADHPTNRGTLCP
KGAALKDFVKSPTRLQYPMHRKPGSDKFERISWEDAFDRIARLMKDDRDANFIAANAA
GVPVNRWTTVGMLAASATTNETAWATFKFAKALGIVGFDNQARVUHGPTVSSLGPTFG
RGAMTNSWTDIKNTDLVVVMGGNAAEAHPCGFKWVTEAKATRGAKLIVVDPRYTRTAS
VSDYYAPIRQGTDIAFLNGVMKYCIDNDKVQWDYMKAFTNASYLVKDGFGYQDGLFTG
YDAEKRDYDKSTWDYVLGDDGFVVTDPALQHPRCVWNLLKAHLAPYTPEMVERICGTP
KDKFLKVAEMISECSSPTKTMTSMYALGWTQHSSGSQNIRAMAMLQLILGNIGVRGGG
MNALRGHSNIQGLTDLGLMSHLLTGYLTMPTEKDVDFTTYMSTRQFKPLRPGQTSYWQ
NYRKFMVSFQKAMWGDAARIDNDWAFNYLSKLDVPAYDVLRVFELMYAGKVNGYICQG
FNPLLAFPNRDKNTKALSNLKWLVTMDPLDTETARFWENHGDFNPVDTASIQTEVFQL
PTTCFAEEEGSLTNSGRWLQWHWAGGTPPGEAKHDTYIVAQIFLRMKEMYRNEGGAFP
DPILNLSWDYADPNEPTPEELAKEINGRALTDLMDPANPMKVQVAAGKQILNFSQLRD
DGSTMCGCWIYSGNFNEQGNNMARRDNHDPDDTGAYLGWSFAWPLNRRTLYNRASADL
QGKPWDPSRKLLEWDGTKWAGYDVPDIAPTAKPDEIGPFIMNQEGTARLFSRGLMRDG
PFPAHMEPFESPVANVFNPKMRGNPVSRVFQTDVAQMGLSDEFPYAATSYRLTEHFHY
WTKHNRVNSALQPEFFVEISEELAEEKNIENGGWVRVWSKRGSVKAKAVVTKRIRPLM
CDGKPVHVVGIPLHWGFTGSAKKGLGPNSLAPFVGDANIETPEYKAFLVNIEPSTAPE
EATV"
misc_feature 1377..4424
/gene="fdoG"
/locus_tag="SMa0002"
/note="formate dehydrogenase, alpha subunit,
proteobacterial-type; Region: formate-DH-alph; TIGR01553"
/db_xref="CDD:162418"
misc_feature 1518..>2255
/gene="fdoG"
/locus_tag="SMa0002"
/note="Formate dehydrogenase N, alpha subunit
(Formate-Dh-Na) is a major component of nitrate
respiration in bacteria such as in the E. coli formate
dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that
is a complex of three different subunits and is the...;
Region: MopB_Formate-Dh-Na-like; cd02752"
/db_xref="CDD:73320"
misc_feature order(1527..1529,1533..1538,1548..1550,1653..1655,
2091..2096)
/gene="fdoG"
/locus_tag="SMa0002"
/note="[4Fe-4S] binding site [ion binding]; other site"
/db_xref="CDD:73320"
misc_feature <2478..>2786
/gene="fdoG"
/locus_tag="SMa0002"
/note="Molybdopterin-Binding (MopB) domain of the MopB
superfamily of proteins, a large, diverse, heterogeneous
superfamily of enzymes that, in general, bind
molybdopterin as a cofactor. The MopB domain is found in a
wide variety of molybdenum- and...; Region:
Molybdopterin-Binding; cl09928"
/db_xref="CDD:209095"
misc_feature <3033..4004
/gene="fdoG"
/locus_tag="SMa0002"
/note="Formate dehydrogenase N, alpha subunit
(Formate-Dh-Na) is a major component of nitrate
respiration in bacteria such as in the E. coli formate
dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that
is a complex of three different subunits and is the...;
Region: MopB_Formate-Dh-Na-like; cd02752"
/db_xref="CDD:73320"
misc_feature 4041..4427
/gene="fdoG"
/locus_tag="SMa0002"
/note="Formate dehydrogenase N, alpha subunit
(Formate-Dh-Na) is a major component of nitrate
respiration in bacteria such as in the E. coli formate
dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that
is a complex of three different subunits and is the...;
Region: MopB_CT_Formate-Dh-Na-like; cd02792"
/db_xref="CDD:30324"
misc_feature order(4065..4079,4083..4094,4305..4307,4350..4352,
4398..4403)
/gene="fdoG"
/locus_tag="SMa0002"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:30324"
gene 4454..5446
/gene="fdoH"
/locus_tag="SMa0005"
/db_xref="GeneID:1235226"
CDS 4454..5446
/gene="fdoH"
/locus_tag="SMa0005"
/EC_number="1.2.1.2"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/note="glimmer prediction; similar to E. coli fdoH"
/codon_start=1
/transl_table=11
/product="formate dehydrogenase susbunit beta"
/protein_id="NP_435248.1"
/db_xref="GI:16262455"
/db_xref="GeneID:1235226"
/translation="MMDSPRTAVSNPPVQPMESNLTERDLVRRSATTELPPPERQLTP
VAKLIDVSKCIGCKACQSACVEWNDTHPGIGENVGYYTNPHDLTEDMFTLMRFTEWVN
PETDNLEWLIRKDGCMHCADPGCLKACPAPGAIVQYTNGIVDFVHENCIGCGYCIKGC
PFNIPRISKVDHRAYKCTLCSDRVAVGQGPACAKACPTQAIVFGTKEDMKKHAEHRIA
DLKSRGYTNAGLYDPPGVGGTHVMYVLHHSDKPHIYSDLPDDPKISAVVQAWKGVTKY
TGLAAMGLVAAGAILHGVFGRANRVQPEDEESAERLVDSAGAAGRTPDDKGQRS"
misc_feature 4526..5374
/gene="fdoH"
/locus_tag="SMa0005"
/note="formate dehydrogenase, beta subunit, Fe-S
containing; Region: FDH-beta; TIGR01582"
/db_xref="CDD:233481"
misc_feature <4760..>5026
/gene="fdoH"
/locus_tag="SMa0005"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:246686"
misc_feature 5240..5371
/gene="fdoH"
/locus_tag="SMa0005"
/note="Formate dehydrogenase N, transmembrane; Region:
Form-deh_trans; pfam09163"
/db_xref="CDD:192219"
gene 5424..6110
/gene="fdoI"
/locus_tag="SMa0007"
/db_xref="GeneID:1235227"
CDS 5424..6110
/gene="fdoI"
/locus_tag="SMa0007"
/EC_number="1.2.1.2"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/note="glimmer prediction; similar to E. coli fdoI"
/codon_start=1
/transl_table=11
/product="formate dehydrogenase subunit gamma"
/protein_id="NP_435249.1"
/db_xref="GI:16262456"
/db_xref="GeneID:1235227"
/translation="MTKASDLEPEDAIHRGPPVTVDRYGPGKRVNHWITASSLILLAL
SGLAMFHPSLFFLTGLFGGGQNTRMLHPWIGVVLFFSFYIFFFQLWKANLFTRADMGW
FTGIRDVIGGHEDRLPEMGKYNAGQKVIFWAMALLIVALIITGVIIWDQYFYSYTSIE
TKRFAVLAHAVAAVLIICVFIVHVYAAFWTRGTFRAMTKGSVTGGWAWRHHRKWLKEL
AGRGRIDPAE"
misc_feature 5466..6107
/gene="fdoI"
/locus_tag="SMa0007"
/note="Cytochrome b subunit of formate dehydrogenase
[Energy production and conversion]; Region: FdnI; COG2864"
/db_xref="CDD:225419"
misc_feature 5484..6086
/gene="fdoI"
/locus_tag="SMa0007"
/note="formate dehydrogenase, gamma subunit; Region:
formate-DH-gamm; TIGR01583"
/db_xref="CDD:130645"
gene 6149..7069
/gene="fdhE"
/locus_tag="SMa0009"
/db_xref="GeneID:1235228"
CDS 6149..7069
/gene="fdhE"
/locus_tag="SMa0009"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/codon_start=1
/transl_table=11
/product="formate dehydrogenase subunit epsilon"
/protein_id="NP_435250.1"
/db_xref="GI:16262457"
/db_xref="GeneID:1235228"
/translation="MSVSPVQPDPSVIGGVPKAPFVLKPNLARLFNDRASRFEALAQG
SHLAPYLNFLAGITRIQSELVSALPPPEPVPADRVERARANAMPPIDRAAMGGSPDCR
EVLQQFFEKAEALEKPAAAAEALAQVRTADEEMLTWMIGNVMADDLPVESLAHHLYVA
AAMQIQAARLAAGLDGSRLVPIRVGVCPACGGRPVASMVIGFHGAEGARYASCSCCAT
MWNEVRVKCLACGSTKGIGYQAVETGDEEATVKAEVCDTCNSWMKILYQNKNPSLDVV
ADDVASLGLDLLMKDTEYKRAGFDPFLMGY"
misc_feature 6149..7066
/gene="fdhE"
/locus_tag="SMa0009"
/note="Uncharacterized protein involved in formate
dehydrogenase formation [Posttranslational modification,
protein turnover, chaperones]; Region: FdhE; COG3058"
/db_xref="CDD:225600"
misc_feature 6152..7063
/gene="fdhE"
/locus_tag="SMa0009"
/note="formate dehydrogenase accessory protein FdhE;
Region: FdhE; TIGR01562"
/db_xref="CDD:130625"
gene 7074..8474
/gene="selA"
/locus_tag="SMa0011"
/db_xref="GeneID:1235229"
CDS 7074..8474
/gene="selA"
/locus_tag="SMa0011"
/EC_number="2.9.1.1"
/function="Small molecule metabolism; aa-tRNAs"
/note="catalyzes the formation of
selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and
L-selenophosphate in selenoprotein biosynthesis"
/codon_start=1
/transl_table=11
/product="selenocysteine synthase"
/protein_id="NP_435251.1"
/db_xref="GI:16262458"
/db_xref="GeneID:1235229"
/translation="MSGPVDLRALPSVDQMLNAAAVSPLVEQHGRAVVTDELRKVLGE
VRLAVRSGGALPGKDGIVAALLSRLDDRSRSNLRPLFNLTGTVLHTNLGRALLAQEAV
DAAVDAMREAAALEFDLDSGGRGERDSHLRELLCELTGAEDATVVNNNAAAVLIALNS
VGAGRQAIVSRGELIEIGGAFRMPDIMERAGVDLVEVGTTNRTHAKDYVKAIGPETAL
ILKVHTSNYRIEGFTAEVPGAELAAIAHERGVVLLNDLGSGSLVDLSRYGLGREPTVR
EAVAEGADLVTFSGDKLLGGPQAGFIVGRRDLIAEINRNPLKRALRVDKIRIAATAAT
LKLYRDPDRLASRLPTLFMLSRVQAEVRAQAERLAPQVGAMLAPSGYAVEVCSCSSQI
GSGALPVDTIPSAGLRIVGSSGSALEALAALFRSLSRPILGRLRDGALVLDLRCLSDE
AEFLKTLSEGSGDAVA"
misc_feature 7092..8447
/gene="selA"
/locus_tag="SMa0011"
/note="seryl-tRNA(sec) selenium transferase; Region: selA;
TIGR00474"
/db_xref="CDD:232992"
misc_feature 7092..7211
/gene="selA"
/locus_tag="SMa0011"
/note="Selenocysteine synthase N terminal; Region:
Se-cys_synth_N; pfam12390"
/db_xref="CDD:204898"
misc_feature 7308..8450
/gene="selA"
/locus_tag="SMa0011"
/note="Selenocysteine synthase [seryl-tRNASer selenium
transferase] [Amino acid transport and metabolism];
Region: SelA; COG1921"
/db_xref="CDD:224832"
misc_feature order(7737..7739,7860..7862,7869..7871,7938..7940,
7947..7949)
/gene="selA"
/locus_tag="SMa0011"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 7947..7949
/gene="selA"
/locus_tag="SMa0011"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 8383..9255
/locus_tag="SMa0013"
/db_xref="GeneID:1235230"
CDS 8383..9255
/locus_tag="SMa0013"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435252.2"
/db_xref="GI:193782525"
/db_xref="GeneID:1235230"
/translation="MVRWFWTCAVCPMRRNSSKPCPRVAAMRWLERLRGNKPQTAPVA
DPMAEALARAQAGDYGSALRIWEPLARAGVARAQNNIGACFAEGLGVPENRELACKWL
RLAAEAGDPVGQRNYAALHMQGLAGTDADYGIAAEYYRRAAEKGDAPAQDMLSWLLLE
GEIMTADPLEARRWAECAAEAGIASSMTRLGMLHHNALGVERDAQKAVYWWLKAAERG
DADAQAMLGAACHMGAGTIRNGVTALVWLIRATEGGSTLAKPFMGPVRDSLSPAEIQE
AERRAQEPLSRRAP"
misc_feature 8521..9090
/locus_tag="SMa0013"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:223861"
misc_feature 8605..8712
/locus_tag="SMa0013"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature 8932..9039
/locus_tag="SMa0013"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
gene 9252..11252
/gene="selB"
/locus_tag="SMa0015"
/db_xref="GeneID:1235231"
CDS 9252..11252
/gene="selB"
/locus_tag="SMa0015"
/function="Small molecule metabolism; aa-tRNAs"
/codon_start=1
/transl_table=11
/product="selenocysteine-specific elongation factor"
/protein_id="NP_435253.1"
/db_xref="GI:16262460"
/db_xref="GeneID:1235231"
/translation="MIVGTAGHIDHGKTTLVKALTGVDTDRLKEEKARGITIDLGFAY
ARFAKDAVTGFVDVPGHERFIHTMLAGAGGIDYAMLVVAADDGIKPQTLEHLAILDLL
GVSRGLVAITKADLADPARLENLTDEIGAVLSSTSLRDAEILPVSVAAGQGIELLKER
LAAAECATAASAVGGRFRLAVDRSFTLSGAGTVVTGTVLSGSVGVGDQVTVSPAGRSA
RVRSIHAQNQRAERGFAGQRCALNLAGEGISKDAITRGDMVVDPHLHAPSDRLDADLS
VLESETKPIGEWFSARFHHASAETGIRIVPLEGPLLPGERRRVQLVLDRPIAAAVGDR
FILRDVSARRTIGGGRLLDLRAPARKRRSPERLSYLQAASLSHAGEALAALLDVPPFL
VDLDVFARDRALSEAELQNAIRSASAEVIEGSAVRHALSKRQRAAFSDEVQRVLSAFH
VENPDLQGIGRERLRLQVTPRLPPPAFLVALRAEQTAGRLVLEGAFVRLPGHEVRLSE
KEEELYARILPHLEGEERFRPPRVRDFAEALGVDEREIRRILKLCARLGRVDQIRHDH
FFTRQTTAEMVAIIRQVAANAERGEFSAGLFRDRVNNGRKVAIEILEFFDRQGVTIRH
GDVRRVNPHRLDLYEGPVPEADEGRGSSPVERPDFKFYRAGS"
misc_feature 9252..10664
/gene="selB"
/locus_tag="SMa0015"
/note="Selenocysteine-specific translation elongation
factor [Translation, ribosomal structure and biogenesis];
Region: SelB; COG3276"
/db_xref="CDD:225815"
misc_feature 9255..9734
/gene="selB"
/locus_tag="SMa0015"
/note="SelB, the dedicated elongation factor for delivery
of selenocysteinyl-tRNA to the ribosome; Region: SelB;
cd04171"
/db_xref="CDD:206734"
misc_feature 9258..9281
/gene="selB"
/locus_tag="SMa0015"
/note="G1 box; other site"
/db_xref="CDD:206734"
misc_feature order(9261..9263,9267..9269,9279..9284,9291..9293,
9300..9305,9372..9377,9432..9437,9504..9509,9621..9623,
9633..9635)
/gene="selB"
/locus_tag="SMa0015"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206734"
misc_feature order(9267..9284,9585..9590,9594..9596,9690..9698)
/gene="selB"
/locus_tag="SMa0015"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206734"
misc_feature 9327..9374
/gene="selB"
/locus_tag="SMa0015"
/note="Switch I region; other site"
/db_xref="CDD:206734"
misc_feature 9360..9362
/gene="selB"
/locus_tag="SMa0015"
/note="G2 box; other site"
/db_xref="CDD:206734"
misc_feature 9420..9431
/gene="selB"
/locus_tag="SMa0015"
/note="G3 box; other site"
/db_xref="CDD:206734"
misc_feature 9426..9482
/gene="selB"
/locus_tag="SMa0015"
/note="Switch II region; other site"
/db_xref="CDD:206734"
misc_feature 9585..9596
/gene="selB"
/locus_tag="SMa0015"
/note="G4 box; other site"
/db_xref="CDD:206734"
misc_feature 9690..9698
/gene="selB"
/locus_tag="SMa0015"
/note="G5 box; other site"
/db_xref="CDD:206734"
misc_feature 9780..10034
/gene="selB"
/locus_tag="SMa0015"
/note="selB_II: this subfamily represents the domain of
elongation factor SelB, homologous to domain II of EF-Tu.
SelB may function by replacing EF-Tu. In prokaryotes, the
incorporation of selenocysteine as the 21st amino acid,
encoded by TGA, requires several...; Region: selB_II;
cd03696"
/db_xref="CDD:239667"
misc_feature 10017..10301
/gene="selB"
/locus_tag="SMa0015"
/note="This family represents the domain of elongation
factor SelB, homologous to domain III of EF-Tu. SelB may
function by replacing EF-Tu. In prokaryotes, the
incorporation of selenocysteine as the 21st amino acid,
encoded by TGA, requires several elements:...; Region:
selB_III; cd04094"
/db_xref="CDD:239761"
misc_feature 10575..10748
/gene="selB"
/locus_tag="SMa0015"
/note="Elongation factor SelB, winged helix; Region:
SelB-wing_2; pfam09106"
/db_xref="CDD:220111"
misc_feature 10998..11141
/gene="selB"
/locus_tag="SMa0015"
/note="Elongation factor SelB, winged helix; Region:
SelB-wing_3; pfam09107"
/db_xref="CDD:204138"
gene 11506..12063
/locus_tag="SMa0017"
/db_xref="GeneID:1235232"
CDS 11506..12063
/locus_tag="SMa0017"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435254.1"
/db_xref="GI:16262461"
/db_xref="GeneID:1235232"
/translation="MAAADDGRNGGGLRQRKARRGLPQARRNHLSGTTRIGKRQAQIL
GSGGLGPSNEPRGGCCMPLGREIPSEDGGENSRSKRSAWGRRQKTMSLTTAFIAELIR
AANEVERLTPYEISRLLDRSVDTIRDMRRQTGIAASHRARDVVIDLQLASARARDLSA
AETRDVLLDAADIIRTLKIVLDGKE"
gene complement(12259..12546)
/locus_tag="SMa5000"
/db_xref="GeneID:6435249"
CDS complement(12259..12546)
/locus_tag="SMa5000"
/note="Has some similarity to S; meliloti SMa1907 and a
group of conserved hypothetical proteins; Possible protein
fragment created by insertion of the adjacent insertion
element, TRm2011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000327.1"
/db_xref="GI:193782526"
/db_xref="GeneID:6435249"
/translation="MSSNVSIISPWNMEFIRSVLGEAGYNAKLLVDDPRSFETAELLV
TKLFLAGEDSRPGLAAKLECQLGKAGGYRRPPGSSLARYAIQGLPSELQFS"
repeat_region 12658..13716
/standard_name="ISRm2011-2/ISRm11"
/note="SMa3000; predicted by homology"
/rpt_family="ISRm2011-2/ISRm11"
gene 12754..13161
/locus_tag="SMa0018"
/db_xref="GeneID:1235233"
CDS 12754..13161
/locus_tag="SMa0018"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="transposase TRm2011-2a"
/protein_id="NP_435255.1"
/db_xref="GI:16262462"
/db_xref="GeneID:1235233"
/translation="MARPFSNDLRERVVDAVTGEGLSCRAAAKRFGIGISTAIDWVRR
FRETGSAAPGQMGGHKPRKLSGPHRAWLLCRCRERDFTLHGLVAELSERGLKVDYRAV
WTFVHEEGLSYKKRRWSPANGSGPTSPATGHDG"
misc_feature 12754..13158
/locus_tag="SMa0018"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3415"
/db_xref="CDD:225949"
misc_feature 12781..12909
/locus_tag="SMa0018"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:222191"
misc_feature 12862..13062
/locus_tag="SMa0018"
/note="Homeodomain-like domain; Region: HTH_32; pfam13565"
/db_xref="CDD:222226"
gene 13227..13700
/locus_tag="SMa0020"
/db_xref="GeneID:1235234"
CDS 13227..13700
/locus_tag="SMa0020"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="transposase TRm2011-2b"
/protein_id="NP_435256.1"
/db_xref="GI:16262463"
/db_xref="GeneID:1235234"
/translation="MAPLRGWAPRGERLVGYAPFGHWNTMTFVAALRADRVSAPFILD
GPINGERFRIYVQQVLVPELKAGDIVILDNLGSHKGQEIRAAIRKAGARLFFLPKYSP
DLNPIEKLFAKIKHWLREAQARSRDAIHDELRHILQAVTPQECAAYFKEAGYERA"
misc_feature 13227..13613
/locus_tag="SMa0020"
/note="DDE superfamily endonuclease; Region: DDE_3;
pfam13358"
/db_xref="CDD:222070"
misc_feature 13299..13688
/locus_tag="SMa0020"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3335"
/db_xref="CDD:225872"
gene complement(14450..15094)
/locus_tag="SMa0021"
/db_xref="GeneID:1235235"
CDS complement(14450..15094)
/locus_tag="SMa0021"
/function="Elements of external origin; Transposon-related
functions"
/note="glimmer prediction, with response regulator
receiver domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435257.1"
/db_xref="GI:16262464"
/db_xref="GeneID:1235235"
/translation="MYRLYNHAIARFSLDCFEGLTGDKTCRLKAQAWLIAELHQLGYR
DMPQKRCCAYRGLRHSYRKIAKEPRSEQTSSCEEADMKPATILLAEDEALLLLDYEAA
LADAGFVVVAVARGGKAIEVWRSADSEVAGVATDIRFYELPNGWSVARVAREIYPGIP
IVYGTGHGALEWRSRGVANSILLEKPFALAQLVTAVSELLNEPVLLSVAPDPNP"
misc_feature complement(14495..>14698)
/locus_tag="SMa0021"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cl09944"
/db_xref="CDD:209106"
misc_feature complement(order(14537..14542,14600..14602,14660..14662,
14687..14689))
/locus_tag="SMa0021"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(14687..14689)
/locus_tag="SMa0021"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(14660..14665,14666..14671))
/locus_tag="SMa0021"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(14534..14542)
/locus_tag="SMa0021"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 15716..15807
/gene="selC"
/locus_tag="SMa0022"
/note="selenocysteine tRNA in FdH cluster"
/db_xref="GeneID:1235236"
tRNA 15716..15807
/gene="selC"
/locus_tag="SMa0022"
/product="tRNA-Sec"
/note="SMA0022"
/db_xref="GeneID:1235236"
gene 15826..16209
/locus_tag="SMa5014"
/db_xref="GeneID:6435250"
CDS 15826..16209
/locus_tag="SMa5014"
/note="Similar to hypothetical protein from XautDRAFT_0850
[Xanthobacter autotrophicus Py2]"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000328.1"
/db_xref="GI:193782527"
/db_xref="GeneID:6435250"
/translation="MTAETPGTDFDDWVVSTYRDVGSFTMLFVLLRIGDTSVDLLRSA
YLHVVGDELRWPDMVQLFRGAGVEWSGAVFYRAGREGLVEDGEAKSRLASLVFKLNED
RSLISEGDLFNADGLRLTIEEIKPH"
gene complement(16251..17318)
/locus_tag="SMa0025"
/db_xref="GeneID:1235237"
CDS complement(16251..17318)
/locus_tag="SMa0025"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction, C-terminus similar to
hypothetical protein HI1048 - Haemophilus influenzae
(strain Rd KW20) with transglutaminase-like superfamily
domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435258.2"
/db_xref="GI:193782528"
/db_xref="GeneID:1235237"
/translation="MLNRRRFLTNAATAAAATLWVSKGGMQARAEEAGNGSPWRRFEI
ITKVDLQPAEGPAQLWLPVVRSAGDYQKADAPLWVSNSTDIRMEKDPSSGADILRVMW
EDEPRRVIEVTQHVATRDRRVTSKIAATEAELQHELRGTPSMPVDGIVKTTAMRIVEG
RDRAEDRARAIYDWVIDNTFRDANIDGCGVGNARDMLETGYFGGKCADISSLFVSLAR
AAGLPARDVFGIRVADSADFKSLGRSGDITKAQHCRAEVYLDAHGWVPVDPADVRKVV
LEENLPLDNPAVRAFREKAYGNWEMNWVGYNTARDLVLPGGELRQGFLMYPAAVTSRG
ELDCLNPQTFAYSITSREITA"
misc_feature complement(16362..17222)
/locus_tag="SMa0025"
/note="Transglutaminase-like enzymes, putative cysteine
proteases [Amino acid transport and metabolism]; Region:
COG1305"
/db_xref="CDD:224224"
misc_feature complement(16512..16868)
/locus_tag="SMa0025"
/note="Transglutaminase-like superfamily; Region:
Transglut_core; pfam01841"
/db_xref="CDD:216735"
gene complement(17424..17852)
/locus_tag="SMa0026"
/db_xref="GeneID:1235238"
CDS complement(17424..17852)
/locus_tag="SMa0026"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435259.1"
/db_xref="GI:16262466"
/db_xref="GeneID:1235238"
/translation="MEQAFPNIVGGDEKEIAMSNLAPTRPSACVLAAFCLLIALAPNP
ASAQNTNERADCAAAAGKAEPATPPDRASADGTAPGNSGSTGWTGGTGGAHIGTNPQG
ATAGSTTWQPPTARGIDLATAPEIPAPETAAPGTQTPTDC"
gene complement(17865..18914)
/gene="selD"
/locus_tag="SMa0028"
/db_xref="GeneID:1235239"
CDS complement(17865..18914)
/gene="selD"
/locus_tag="SMa0028"
/EC_number="2.7.9.3"
/function="Small molecule metabolism; Global functions"
/note="catalyzes the formation of selenophosphate from
selenide and ATP"
/codon_start=1
/transl_table=11
/product="selenophosphate synthetase"
/protein_id="NP_435260.1"
/db_xref="GI:16262467"
/db_xref="GeneID:1235239"
/translation="MNTLAPRLTDLAHGGGCGCKLAPSVLQQLLANQPAARPFAQLLV
GNDMADDAAVWQVDDNTCVIATTDFFMPIVDDPRDFGRIAATNAISDVYAMGGKPILA
LAIVGMPINKLDSTTIAKILEGGASICAEAGIPVAGGHSIDSVEPIYGLAVIGLCHPS
EVRRNGGVKAGDALILTKGIGVGIYSAAIKKNALPPGCYEEMIGSTTLLNRIGADLAA
DPDVHALTDVTGFGVLGHGLEMARASQLSLTLRLSAIPFLSQAYMLAEQGFITGASGR
NWASYGADVVLPDDLPDWQRLLLADPQTSGGLLVACAPEKAGALVEKVRLAGYPLAGI
VGTAAAGAAQIKVIS"
misc_feature complement(17922..18914)
/gene="selD"
/locus_tag="SMa0028"
/note="selenophosphate synthetase; Provisional; Region:
PRK00943"
/db_xref="CDD:234870"
misc_feature complement(17925..18893)
/gene="selD"
/locus_tag="SMa0028"
/note="Selenophosphate synthetase (SelD) catalyzes the
conversion of selenium to selenophosphate which is
required by a number of bacterial, archaeal and eukaryotic
organisms for synthesis of Secys-tRNA, the precursor of
selenocysteine in selenoenzymes. The...; Region: SelD;
cd02195"
/db_xref="CDD:100031"
misc_feature complement(order(18198..18200,18459..18461,18471..18476,
18495..18497,18594..18596,18603..18605,18612..18614,
18642..18644,18708..18710,18714..18716,18720..18731))
/gene="selD"
/locus_tag="SMa0028"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100031"
misc_feature complement(order(18495..18503,18642..18644,18654..18656))
/gene="selD"
/locus_tag="SMa0028"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:100031"
gene complement(19209..19436)
/locus_tag="SMa0031"
/db_xref="GeneID:1235240"
CDS complement(19209..19436)
/locus_tag="SMa0031"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435261.1"
/db_xref="GI:16262468"
/db_xref="GeneID:1235240"
/translation="MSEWIDFERWPDCKRMERPGIVFEVTNGDQTLLTGCVVPLPLPS
DWVAHPLRFRAVPQPRPRHSSPLPKPAGPQQ"
misc_feature complement(19281..>19409)
/locus_tag="SMa0031"
/note="NADH dehydrogenase subunit C; Validated; Region:
PRK07735"
/db_xref="CDD:236081"
gene complement(19453..21108)
/locus_tag="SMa0034"
/db_xref="GeneID:1235241"
CDS complement(19453..21108)
/locus_tag="SMa0034"
/EC_number="3.4.24.40"
/function="Macromolecule metabolism; Macromolecule
degradation; degradation of proteins, peptides,
glycopeptides"
/note="glimmer prediction; partially similar to serralysin
(Serratia protease) precursor"
/codon_start=1
/transl_table=11
/product="protease"
/protein_id="NP_435262.1"
/db_xref="GI:16262469"
/db_xref="GeneID:1235241"
/translation="MPAATTYATTGNAYIDGLLGDWKWGIKDFTFSFPTSASFYSAGY
GNGEPLKGFAALSGAQQAATRAALDQFSSVANVTFTEITESATKHADLRLASSDAPST
AWAYFPSTAAEGGDAWFNKSSGHYSRPVKGNYAYVTFLHETGHALGLEHAHEGNVMPV
NRDSMEYTVMSYRSYVGASTTTGYTNETWGYAQSLMMYDIAALQHMYGADFTTHSENT
TYRWSPTSGEMFVNGMGQGAPGGNKILLTVWDGGGTDTYDFSNYTTALKVDLRPGEWT
TTSAAQLAKLHYDGSKVAIGNIANALQYQGDTRSLIENAKGGAGNDAITGNAAANALW
GNGGNDRLIGGDGNDNLAGGAGADRLDGGNGTDLANYSNATAGMVADLYSPGSNTGEA
AGDTYVSIERLYGSAFNDTLRGDNRANLLNGLAGNDMLNGRDGNDTLIGGNGADRLIG
GGGADTFVFQTTAQSAPAFRDVIDDFASGVDRMDLRSIDASSKAIGDQAFLFIGSSAF
HGKAGELNFRSGIVSGDVNGDGLADFQIRVMNLSALSGSDFLL"
misc_feature complement(20485..21024)
/locus_tag="SMa0034"
/note="Zinc-dependent metalloprotease, serralysin_like
subfamily. Serralysins and related proteases are important
virulence factors in pathogenic bacteria. They may be
secreted into the medium via a mechanism found in
gram-negative bacteria, that does not...; Region:
ZnMc_serralysin_like; cd04277"
/db_xref="CDD:239804"
misc_feature complement(order(20656..20658,20674..20676,20683..20688))
/locus_tag="SMa0034"
/note="active site"
/db_xref="CDD:239804"
misc_feature complement(19456..>19806)
/locus_tag="SMa0034"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
gene 21429..23051
/locus_tag="SMa0036"
/db_xref="GeneID:1235242"
CDS 21429..23051
/locus_tag="SMa0036"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; similar to ABC transporter
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435263.1"
/db_xref="GI:16262470"
/db_xref="GeneID:1235242"
/translation="MIRIENISKSNSHRILYIEASAALNRGEKIGLVGPNGAGKTTLF
RMITGQELPDEGQVAVEKGMTIGYFDQDVGEMAGRSAVAEVMEGAGPISAVAAELHEL
ETAMSDPDRMDEMDAIVERYGEVQARYEELDGYALEGRAREVLAGLSFSQEMMDGDVA
KLSGGWKMRVALARILLMRPDVMLLDEPSNHLDLESLIWLENFLKGYDGALLMTSHDR
EFMNRIVTKIIEIDGGALTTYSGDYGFYDEQRALNARQQQAQFERQQAMLAKEIKFIE
RFKARASHASQVQSRVKKLEKIDRVEPPRRRQTVAFEFLPAPRSGEDVVNLKSVHKTY
GSRTIYDGLDFMVRRRERWCIMGINGAGKSTLLKLVTGTTNPDKGSVSLGASVKLGYF
AQHSMDLLDGESTILQWLEERFPKAGQAPLRALAGCFGFSGDDVEKRCRVLSGGEKAR
LVMAAMLFDPPNFLVLDEPTNHLDLDTKEMLIKALSAYQGTMLFVSHDRRFLSALSNR
VLELTPDGINQYGGGYSEYVERTGQEAPGLRG"
misc_feature 21429..23030
/locus_tag="SMa0036"
/note="ATPase components of ABC transporters with
duplicated ATPase domains [General function prediction
only]; Region: Uup; COG0488"
/db_xref="CDD:223562"
misc_feature 21432..>21641
/locus_tag="SMa0036"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
misc_feature 21498..>22013
/locus_tag="SMa0036"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 21528..21551
/locus_tag="SMa0036"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(21537..21542,21546..21554,21639..21641,21984..21989)
/locus_tag="SMa0036"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 21630..21641
/locus_tag="SMa0036"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature <21903..22130
/locus_tag="SMa0036"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
misc_feature 21912..21941
/locus_tag="SMa0036"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 21972..21989
/locus_tag="SMa0036"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 21996..22007
/locus_tag="SMa0036"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 22113..22370
/locus_tag="SMa0036"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:221805"
misc_feature 22401..22976
/locus_tag="SMa0036"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
gene complement(23398..24297)
/locus_tag="SMa0039"
/db_xref="GeneID:1235243"
CDS complement(23398..24297)
/locus_tag="SMa0039"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to LysR-family
transcriptional regulators with HTH domain"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435264.2"
/db_xref="GI:193782529"
/db_xref="GeneID:1235243"
/translation="MDRLTSMAVFVKAVDLGSFAAAAEALGLSGPMVGKHVRSLEDRL
GVQLINRTTRRQSLTEFGYVYYERCRVVLAEAQAADALASDQLSEPRGKLRVTMPVHF
GRHCVTPVLLELARKYPALELDLSFNDRIIDLAEDGFDLSIRTGVLEDRAGLIARRVA
RQPMIVCASPSYLESHGCPEAPEDLAQHAAVVYRRSGPVSPWLFPRPGQSSSEVTPLH
RFRLDDLDAIADAAARGLGLAWLPYWLVRGRIEAGTLVRLLPEQPPFLYDCHAVWLQT
PHLPLKVRVAVDALAAQLPSFMT"
misc_feature complement(23428..24297)
/locus_tag="SMa0039"
/note="transcriptional regulator; Provisional; Region:
PRK10632"
/db_xref="CDD:182601"
misc_feature complement(24112..24288)
/locus_tag="SMa0039"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(23428..24024)
/locus_tag="SMa0039"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_6; cd08475"
/db_xref="CDD:176164"
misc_feature complement(order(23491..23493,23572..23574,23623..23625,
23812..23814,23818..23820,23863..23865,23980..23982,
23992..23994))
/locus_tag="SMa0039"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176164"
misc_feature complement(order(23596..23598,23605..23610,23629..23643,
23731..23733,23917..23937,23941..23943,23953..23955,
23962..23967,23971..23976,23986..23991))
/locus_tag="SMa0039"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176164"
gene 24399..25388
/locus_tag="SMa0041"
/db_xref="GeneID:1235244"
CDS 24399..25388
/locus_tag="SMa0041"
/codon_start=1
/transl_table=11
/product="quinone oxidoreductase"
/protein_id="NP_435265.2"
/db_xref="GI:193782530"
/db_xref="GeneID:1235244"
/translation="MARVVRFHELGGPEVLRIEDVHVPEPGPHEVRIRVKALGLNRAE
ALLRSGAYIETATFPSGLGLEAAGFVEKVGPGVQGFIPGDPVSVLPPKSMIRWPAYGE
LAIFPAALLVRHPPSLSFEEAAAVWMQYLTAYGGLVDIGGLRRGDFVAITAASSSVGL
AAIQIANMVGAIPVAVTRTSAKRQGLLEAGAAHVIASMEEDLEAQLKRVSGQHGIRVV
FDPVGGPIFEPLAAAMAWGGILVEYGGLSPEKTPFPLFAVLSKSLTLRGYLVHELLAD
PGRLERAKAFILDGLVSGALRPIIARAFPFDQIVEAHRFLESNEQFGKIVVTV"
misc_feature 24402..25385
/locus_tag="SMa0041"
/note="Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR2; cd08268"
/db_xref="CDD:176229"
misc_feature 24402..25385
/locus_tag="SMa0041"
/note="NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only]; Region: Qor; COG0604"
/db_xref="CDD:223677"
misc_feature order(24519..24527,24534..24536,24762..24764,24792..24794,
24855..24866,24870..24875,24927..24932,24942..24944,
24987..24989,25059..25064,25068..25070,25125..25130,
25200..25208)
/locus_tag="SMa0041"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:176229"
gene complement(25417..25683)
/locus_tag="SMa0044"
/db_xref="GeneID:1235245"
CDS complement(25417..25683)
/locus_tag="SMa0044"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; start codon changed based on
codon usage pattern"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435266.1"
/db_xref="GI:16262473"
/db_xref="GeneID:1235245"
/translation="MCRNIKPLFNFDPPATDEEVRDAALQFVRKLSGTTKPSERNEAA
FERAVDSIAACARELLDALETSQPPRNREEVAARARERSAMRFA"
misc_feature complement(25477..25683)
/locus_tag="SMa0044"
/note="Uncharacterized conserved protein (DUF2277);
Region: DUF2277; pfam10041"
/db_xref="CDD:150687"
gene complement(25848..26597)
/gene="cah"
/locus_tag="SMa0045"
/db_xref="GeneID:1235246"
CDS complement(25848..26597)
/gene="cah"
/locus_tag="SMa0045"
/EC_number="4.2.1.1"
/function="Small molecule metabolism; energy metabolism,
carbon; aerobic respiration"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase"
/protein_id="NP_435267.1"
/db_xref="GI:16262474"
/db_xref="GeneID:1235246"
/translation="MERRDFLRGLALLAACPLCVKTAYAAEGVHWRYEGEEGPEHWGS
LAKENSACSAGSQQSPIDIRGAVKADIPELTADWKSGGTILNNGHTIQVNAAGGTLRR
GDKSYDLVQYHFHSPSEHFVDGKSFPMEAHFVHKNAETGTLGVLGVFLVPGAANSTFA
SLAEKFPRNPGEESPLITIDPKGLLPSSLSYWTYEGSLTTPPCSEIVDWMVAMEAVEV
DPGDIKKFTALYSMNARPALAGNRRYVLSSS"
misc_feature complement(25851..26597)
/gene="cah"
/locus_tag="SMa0045"
/note="Carbonic anhydrase [Inorganic ion transport and
metabolism]; Region: Cah; COG3338"
/db_xref="CDD:225875"
misc_feature complement(25857..26486)
/gene="cah"
/locus_tag="SMa0045"
/note="Carbonic anhydrase alpha, prokaryotic-like
subfamily. Carbonic anhydrases (CAs) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism: a nucleophilic attack of
a zinc-bound hydroxide ion on carbon...; Region:
alpha_CA_prokaryotic_like; cd03124"
/db_xref="CDD:239398"
misc_feature complement(order(26001..26003,26202..26204,26241..26243,
26253..26255,26259..26261,26265..26267,26331..26333))
/gene="cah"
/locus_tag="SMa0045"
/note="active site"
/db_xref="CDD:239398"
misc_feature complement(order(26202..26204,26253..26255,26259..26261))
/gene="cah"
/locus_tag="SMa0045"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:239398"
gene 26906..27154
/locus_tag="SMa5015"
/db_xref="GeneID:6435251"
CDS 26906..27154
/locus_tag="SMa5015"
/note="Similar to an approximately 75 amino acid-central
region of GntR-family transcriptional regulators; Possible
ORF fragment"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000329.1"
/db_xref="GI:193782531"
/db_xref="GeneID:6435251"
/translation="MVPEVLRHLESESLVANLPNKGPIVSRLDLNEAKQIDQIRVAVG
GRATVRGAARPAIVEALEASFKGIRECYASRLRRAPAT"
misc_feature <26915..>27013
/locus_tag="SMa5015"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:224715"
gene 27295..27516
/locus_tag="SMa0050"
/db_xref="GeneID:1235248"
CDS 27295..27516
/locus_tag="SMa0050"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; partial homology to succinate
semialdehyde dehydrogenase; looks like fragmented gene"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435269.1"
/db_xref="GI:16262476"
/db_xref="GeneID:1235248"
/translation="MQVGFYDDFAERLAAKVRKMKVDNGFEPGADTGPLISQKALARV
QEHISDAVAKGRECGLFFEPTVLMGGRWR"
misc_feature <27298..>27495
/locus_tag="SMa0050"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:245815"
gene 27507..27713
/locus_tag="SMa0052"
/db_xref="GeneID:1235249"
CDS 27507..27713
/locus_tag="SMa0052"
/function="Miscellaneous; Unknown"
/note="looks like fragmented gene; glimmer prediction;
partial homology to succ"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435270.1"
/db_xref="GI:16262477"
/db_xref="GeneID:1235249"
/translation="MEMKVARGNFGPVASLFKFSTEEAVFEMANNTEFGLASYFYSKD
ISKIFRVPEALEYGMVGINAGLIH"
misc_feature <27510..27707
/locus_tag="SMa0052"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:213126"
gene complement(28295..29428)
/locus_tag="SMa0056"
/db_xref="GeneID:1235250"
CDS complement(28295..29428)
/locus_tag="SMa0056"
/function="Small molecule metabolism; Central intermediary
metabolism"
/note="glimmer prediction; start codon changed based on
similarity in protein database"
/codon_start=1
/transl_table=11
/product="dehydratase/enolase"
/protein_id="NP_435271.1"
/db_xref="GI:16262478"
/db_xref="GeneID:1235250"
/translation="MKRPRITDIRATTVTVPLEAPLRHSNGAHWGRFVRTIVEVETDV
GIVGLGEMGGGGESAEAAFRALKPYLLGHDTFELENLRFMICNPTASLYNNRTQMHAA
IEFACLDIMGKFLGVPVCDLLGGKMRDAVPFASYMFFRLPNKDTGEGETRTADQLIEQ
TLALKKKCGFTSHKLKSGVFPPDYELEVFRAWAKALGPDSVRYDPNAAFSVEEAIRFA
KGIEDLNNDYYEDPTWGLNGMRRVRENTTMPLATNTVVVNFEQLATNILNPAVDVILL
DTTFWGGSALREGGGRLRDLPTRHCGTFVGRTRHPARHHASPRRGSPEPRLPRGCALS
PTHGRYHRRRPDALRERHYQGADGAGSRGGARSRQARAVRRPP"
misc_feature complement(<28511..29419)
/locus_tag="SMa0056"
/note="L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope biogenesis,
outer membrane / General function prediction only];
Region: COG4948"
/db_xref="CDD:34556"
misc_feature complement(<28580..29416)
/locus_tag="SMa0056"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl09108"
/db_xref="CDD:213114"
misc_feature complement(order(28670..28672,28739..28741,28817..28819))
/locus_tag="SMa0056"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:73188"
misc_feature complement(28598..28600)
/locus_tag="SMa0056"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:73188"
gene complement(29492..30688)
/locus_tag="SMa0058"
/db_xref="GeneID:1235251"
CDS complement(29492..30688)
/locus_tag="SMa0058"
/EC_number="5.-.-.-"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="N-acylglucosamine 2-epimerase"
/protein_id="NP_435272.1"
/db_xref="GI:16262479"
/db_xref="GeneID:1235251"
/translation="MKPIPDFRSKDFLLAHMREIMDFYHPICLNEEDGGYYNEYRDDG
FITDRKTQHLVSTTRFIFNYATAAVLFERPDFAEAAAHGVRYLDEVHRDPEHGGYYWL
MRGRDAVDATKHCYGHAFVLLAYATAMKAGIPGTGARVSQTWDLLENRFWEPDRELYK
DEVSRDWGATSPYRGQNANMHMTEAMLAAYEATGEIRYLDRAETLARRICVELAANTQ
DVVWEHYRQDWSVDWDYNKDDPKHLFRPYGYQPGHMTEWTKLLLILERYRPQDWLLPK
ALLLYETALAKSADLEFGGMHYSYGPEGKLYDLDKYHWVHCETIAAAAALAGRTGRER
YWQDYDRLWRYSWRHLIDHEYGCWFRILSPDGVKQSDIKSPSGKTDYHPFGACYEILR
VLGEAQ"
misc_feature complement(29498..30685)
/locus_tag="SMa0058"
/note="AGE domain; N-acyl-D-glucosamine 2-epimerase
domain; Responsible for intermediate epimerization during
biosynthesis of N-acetylneuraminic acid. Catalytic
mechanism is believed to be via nucleotide elimination and
readdition and is ATP modulated. AGE is...; Region: AGE;
cd00249"
/db_xref="CDD:238153"
misc_feature complement(order(29501..29503,29513..29515,30446..30448,
30485..30487,30635..30637,30656..30658))
/locus_tag="SMa0058"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238153"
misc_feature complement(order(29534..29536,29543..29548,29558..29560,
29735..29737,29747..29752,29909..29914,29921..29923,
29930..29932,30137..30139,30146..30151,30158..30160,
30320..30322,30329..30331,30341..30343,30503..30505,
30512..30514,30524..30526))
/locus_tag="SMa0058"
/note="putative active cleft [active]"
/db_xref="CDD:238153"
gene complement(30703..31488)
/locus_tag="SMa0059"
/db_xref="GeneID:1235252"
CDS complement(30703..31488)
/locus_tag="SMa0059"
/note="glimmer prediction; similar to short chain alcohol"
/codon_start=1
/transl_table=11
/product="short-chain alcohol dehydrogenase"
/protein_id="NP_435273.1"
/db_xref="GI:16262480"
/db_xref="GeneID:1235252"
/translation="MSDFNGKSIVVTGGSLGMGLACAHRFAAGGGKVTIVANDKASVD
EAVTSIGDNAAGFVGDVRSKADMNAAVQAAVSRHGGVDILACCAGIQRYGTVVDTADE
VWDDVLDINLKGIFLASKFAIPEMRKRGGGAIVAISSVQAYASQTGVAAYTASKGAIN
ALVRAMALDHAGDNITVNAVCPASIDTPMLRWAADLWKGEGTVEATLETWGKGHPLGR
VGKPSEVAELVAFLASEKARFITGADIKIDGGVLSKLGIVIPD"
misc_feature complement(30706..31488)
/locus_tag="SMa0059"
/note="aldose dehydrogenase; Validated; Region: PRK06398"
/db_xref="CDD:235794"
misc_feature complement(30745..31464)
/locus_tag="SMa0059"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature complement(order(30925..30930,30934..30945,31021..31023,
31033..31035,31072..31080,31159..31161,31222..31230,
31306..31314,31372..31380,31435..31446,31450..31452))
/locus_tag="SMa0059"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature complement(order(31021..31023,31033..31035,31072..31074,
31156..31158))
/locus_tag="SMa0059"
/note="active site"
/db_xref="CDD:212491"
gene complement(31488..32423)
/locus_tag="SMa0060"
/db_xref="GeneID:1235253"
CDS complement(31488..32423)
/locus_tag="SMa0060"
/note="glimmer prediction; similar to Ca2+-binding protein
regucalcin highly conserved in vertebrate species"
/codon_start=1
/transl_table=11
/product="gluconolactonase"
/protein_id="NP_435274.1"
/db_xref="GI:16262481"
/db_xref="GeneID:1235253"
/translation="MSATVSLLLDAKDIVGESILWCGDEKALYWVDIVGKRIHRLEPE
NGRHDTWPTPDFVTSIGMRKDGGFIVGLSRNVCLWTPDGPFEEFAMPEPDLPENRLNE
GRVAPDGSFWVATMQSNLDAGGSPKDMDRQSGAVYRIDPTGHVSQLTPNEYGITNTMG
WTRDNRFFFADTLANEIYMFDCDLAARRIDNRRTIVAGFARGLPDGSCLDADDRLWNC
RVAGGAAVAGFDGAGRLMHLIELPASWPTSCTFGGPVLSTLYVTSARFTMTGDHLDMH
PLEGGLFAVEGVGHGVEEPKFGQAPDKFPSVSEIA"
misc_feature complement(31533..32423)
/locus_tag="SMa0060"
/note="Gluconolactonase [Carbohydrate transport and
metabolism]; Region: COG3386"
/db_xref="CDD:225921"
gene 32634..33323
/locus_tag="SMa0062"
/db_xref="GeneID:1235254"
CDS 32634..33323
/locus_tag="SMa0062"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with gntR domain"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435275.1"
/db_xref="GI:16262482"
/db_xref="GeneID:1235254"
/translation="MTRDIKISAAEHCYRTLSRKIIGLELKPNEPIGEHALAGLLGVS
RTPVREALSRLSAEGLVDLRSRAGVVVAPIRMDAVRTAQFVREQLELAIVAEAAQQSN
RRVLLGIRQAIEEQELAILEDNPDLFFECDERMHALYCSLAGRDGVWAFISDAKKHMD
RVRRLSIQAGQLDQLVEDHRRVLKAVGEGDATKAQEIMRLHLRRAVVDLGELSQRFSS
YFALDAAGDAR"
misc_feature 32634..33296
/locus_tag="SMa0062"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:224715"
misc_feature 32673..32849
/locus_tag="SMa0062"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(32733..32738,32760..32774,32778..32783,32790..32792,
32820..32825,32829..32840)
/locus_tag="SMa0062"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 32886..33245
/locus_tag="SMa0062"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:219539"
gene 33453..34187
/locus_tag="SMa0063"
/db_xref="GeneID:1235255"
CDS 33453..34187
/locus_tag="SMa0063"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with gntR transcriptional
regulator domain"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435276.2"
/db_xref="GI:193782532"
/db_xref="GeneID:1235255"
/translation="MIELKAEEQSSSGRSGAEGLLGGVMTAVKTHIRENGLQVGDSLP
SEGTFAEKLGVSRSVVREAYRSLAALTLIDIGNGRRPRVAAPKADVLALVTDHAVHTD
QVTIQQIFDVRRTVERRTVVLAAMRRTDKEAAEIVALAEAMQRDFDQPVRVMEHDIAF
HEAIGRASRNPMFALIVGSFHVVTRHTWPIGWASRGSNETRQESIDGHMTIAQAIANG
DPAKGEEAMVEHFDLTVKALLAAGVY"
misc_feature 33522..34178
/locus_tag="SMa0063"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:225097"
misc_feature 33522..33704
/locus_tag="SMa0063"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(33582..33584,33588..33593,33615..33629,33633..33638,
33645..33647,33675..33680,33684..33695)
/locus_tag="SMa0063"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 33774..34148
/locus_tag="SMa0063"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:219539"
gene 34190..35392
/locus_tag="SMa0064"
/db_xref="GeneID:1235256"
CDS 34190..35392
/locus_tag="SMa0064"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; with homology to the domain of
mandelate racemase / muconate lactonizing enzyme family"
/codon_start=1
/transl_table=11
/product="dehydratase/enolase"
/protein_id="NP_435277.2"
/db_xref="GI:193782533"
/db_xref="GeneID:1235256"
/translation="MKITELETVRVRDFPNILWVRIHTDEGLVGLGETFFMAQTVETY
IHEVVAPKLVGRDPLEIDRISKDLTGYLGFRSTGAEMRGNSAVDIGLWDLFGKATNLP
IAQLLGGFSRREIRTYNTCAGNTYMRDAKGQQTANYGIGGPRRDYDDLNGFLERADEL
AEDLLSEGITAMKIWPFDIAAEKSGGQYISGPDLRKALEPFEKIRKRVGDRIDIMVEF
HSMWQLTPAIQIARALEPYATFWHEDPIKMDSLSSLKRYAAASRAPLCASETLATRWA
FRDLMETDAAGVVMLDLSWCGGISEAKKISTMAEAWHLPVAPHDCTGPVVLAASTHLS
LNAPNALVQESVRAYYKTWYADLTTQLPTVTNGMITIPPGAGHGVDLAPDLDRKFEVS
RRSSQIED"
misc_feature 34190..35371
/locus_tag="SMa0064"
/note="L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope biogenesis,
outer membrane / General function prediction only];
Region: COG4948"
/db_xref="CDD:34556"
misc_feature 34193..35329
/locus_tag="SMa0064"
/note="Mandelate racemase (MR)-like subfamily of the
enolase superfamily. Enzymes of this subgroup share three
conserved carboxylate ligands for the essential divalent
metal ion (usually Mg2+), two aspartates and a glutamate,
and conserved catalytic residues; Region: MR_like;
cd03316"
/db_xref="CDD:48191"
misc_feature order(34706..34708,34712..34714,34838..34840,34916..34918,
34994..34996,35063..35065,35144..35146,35219..35221)
/locus_tag="SMa0064"
/note="active site pocket [active]"
/db_xref="CDD:48191"
gene 35455..36147
/locus_tag="SMa0065"
/db_xref="GeneID:1235257"
CDS 35455..36147
/locus_tag="SMa0065"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to transcriptional
regulator with gntR domain"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435278.1"
/db_xref="GI:16262485"
/db_xref="GeneID:1235257"
/translation="MQNIKPQRVLSAIEAVGPQVYRILREQIIQAELVPGARISEAEI
ARSLSISRQPVREAFIKLAEEGLVQVLPQRGTYVTRISTASVMDVRFVREAIEADIVR
QVAGEHPAAIVDELREQIARQKQVPHDDRAAFLRLDELFHHTLATAAGRAHAWSVIES
VKAQMDRVRFLSVDDLQIGRLIEQHERIVDAIAARDVGGAEQALRMHLREILKSLPEI
ARSREEFFDGTG"
misc_feature 35509..36135
/locus_tag="SMa0065"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:224715"
misc_feature 35509..35691
/locus_tag="SMa0065"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(35575..35580,35602..35616,35620..35625,35632..35634,
35662..35667,35671..35682)
/locus_tag="SMa0065"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 35716..36081
/locus_tag="SMa0065"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:219539"
gene 36205..37167
/locus_tag="SMa0067"
/db_xref="GeneID:1235258"
CDS 36205..37167
/locus_tag="SMa0067"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; similar to sugar ABC
transporter periplasmic sugar-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435279.1"
/db_xref="GI:16262486"
/db_xref="GeneID:1235258"
/translation="MIAGTALGLTLMAPAASAEGLSIAFISHSSASNTFWQAVKKGYD
DACEKVGASCQLILTQTEGAVEQAVANLQAAIASRPDAIFVAIVDNNAYDNVIKEAVD
AGILVLAVNVDDSEGAKGNARKAFIGQGFTAAGYSLAKAQSENFPKDGPLNLLVGVNA
PGQTWSEQRAGGVTKFLEEYKAEHSDREVNITRIDSATDLALTADRIGAYLNANPDTA
AYFDTGYWHAGVAKVLKDRGIEPGKVLLGGFDLVPEVLQQMEAGYVQVQVDQQPYMQG
FIPVMQAYLWKTAGLTPSDVDTGQGIVTPKDVPTILELAKQGLR"
misc_feature 36205..37158
/locus_tag="SMa0067"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:32063"
misc_feature 36268..37113
/locus_tag="SMa0067"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_4; cd06312"
/db_xref="CDD:107307"
misc_feature order(36307..36309,36535..36537,36709..36711,36952..36954,
37012..37014)
/locus_tag="SMa0067"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107307"
gene 37353..38336
/locus_tag="SMa0070"
/db_xref="GeneID:1235259"
CDS 37353..38336
/locus_tag="SMa0070"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; C-terminal similar to sugar ABC
transporter permease"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435280.1"
/db_xref="GI:16262487"
/db_xref="GeneID:1235259"
/translation="MKRFLKIYLDKPELAGLALLFVLVLVFQAKSNGILLSFENMRGV
MGLLPEMALVAIGVTLLMICGEFDLSVGSVFALMPMSMAVLLNSGVPFTVAVLLGLMI
CGAIGFINGYVTLQFSIPSFITTLGMLFIARSLTIVISGGFPPLLPPDLPTWLFTDYI
WQGSPFRMSFLWFVVIAALVAALLSLTNFGNWIRATGGFNEAAASMGIPVKRVKIVCF
MLCSVLAGFAGLLQVLRLGSPLPSIGEGLELQAVAAAVIGGTALAGGIGTVFGAIIGT
LLIRTIDNGLVLSRVDANWFKFAIGVLTMFAVIANAWMGKMSRKIKVEAHK"
misc_feature 37497..38285
/locus_tag="SMa0070"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 37506..38276
/locus_tag="SMa0070"
/note="Branched-chain amino acid transport system /
permease component; Region: BPD_transp_2; pfam02653"
/db_xref="CDD:217165"
misc_feature 37953..38009
/locus_tag="SMa0070"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 38333..39064
/locus_tag="SMa0072"
/db_xref="GeneID:1235260"
CDS 38333..39064
/locus_tag="SMa0072"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; similar to sugar ABC transport
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435281.1"
/db_xref="GI:16262488"
/db_xref="GeneID:1235260"
/translation="MTTPIIECRNLQKWYSGVHALKNVDLTIHPGETVGLVGDNGAGK
STLIKILSGVHHQDSGDVLIEGRRVALRSPKDAMRYGLETIYQYNSMVPTMSIARNLF
IGREPMKWSVFGVGIMDQKRMRVESIQAIADVDLHLRSPDALVGELSGGQRQGVAIAR
AMHFKSKVLILDEPTNHLSVKETDKVIGFVRGLKAQGLTGIFISHNMQHVFQSCDRIV
AMARGEIVFDKPTADTSIDEVHALL"
misc_feature 38339..39031
/locus_tag="SMa0072"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:224049"
misc_feature 38348..39010
/locus_tag="SMa0072"
/note="First domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:213183"
misc_feature 38444..38467
/locus_tag="SMa0072"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213183"
misc_feature order(38453..38458,38462..38470,38591..38593,38846..38851,
38945..38947)
/locus_tag="SMa0072"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213183"
misc_feature 38582..38593
/locus_tag="SMa0072"
/note="Q-loop/lid; other site"
/db_xref="CDD:213183"
misc_feature order(38615..38626,38693..38710)
/locus_tag="SMa0072"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213183"
misc_feature 38834..38851
/locus_tag="SMa0072"
/note="Walker B; other site"
/db_xref="CDD:213183"
misc_feature 38858..38869
/locus_tag="SMa0072"
/note="D-loop; other site"
/db_xref="CDD:213183"
misc_feature 38933..38953
/locus_tag="SMa0072"
/note="H-loop/switch region; other site"
/db_xref="CDD:213183"
gene 39072..39830
/gene="fabG"
/locus_tag="SMa0074"
/db_xref="GeneID:1235261"
CDS 39072..39830
/gene="fabG"
/locus_tag="SMa0074"
/note="catalyzes the first of the two reduction steps in
the elongation cycle of fatty acid synthesis"
/codon_start=1
/transl_table=11
/product="3-ketoacyl-ACP reductase"
/protein_id="NP_435282.1"
/db_xref="GI:16262489"
/db_xref="GeneID:1235261"
/translation="MTELSGKTILITGALGTLGRAQAERLGRAGAGLLLLLDRPGAEA
GEGFAASLAAAHETMAIYVGEDLNNLASAEKRAATLSSEHGGIDILINNAALIINKPF
EEFSLEEYEDQVRVNSSAAFALARAVTPGMKQKRYGKIVNFCSLTLNGRWDGYVPYVA
SKGAMLGLTKALARELGPHGVRVNAVSPGAVVSEAEERVFADRLQQYNDWIVENQSLK
ARIQPSDVADLVHFLVSPASDMISGQNIAIDGGW"
misc_feature 39072..39827
/gene="fabG"
/locus_tag="SMa0074"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional; Region: fabG; PRK12825"
/db_xref="CDD:237218"
misc_feature <39249..39818
/gene="fabG"
/locus_tag="SMa0074"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(39264..39272,39348..39356,39417..39419,39498..39506,
39543..39545,39555..39557,39633..39644,39648..39653)
/gene="fabG"
/locus_tag="SMa0074"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(39420..39422,39504..39506,39543..39545,39555..39557)
/gene="fabG"
/locus_tag="SMa0074"
/note="active site"
/db_xref="CDD:212491"
gene 39830..40717
/locus_tag="SMa0077"
/db_xref="GeneID:1235262"
CDS 39830..40717
/locus_tag="SMa0077"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435283.1"
/db_xref="GI:16262490"
/db_xref="GeneID:1235262"
/translation="MPAIELSNGEARLLARPDLGAGLTAFDVLHDGVWQAIFRRVDPS
TAHPFALSNILLVPFSGRVSGGGFTFDGTFHALPRNVETELYPIHGNGFSAAWDVASL
SADLLTLTLSAEGPGPFRYDATMSYRLQGAGLLMELSLVNRARIRLPYGAGFHPWFVR
EPDTTLHAPARGVWLEQSDHLPKAHDAIAAQADLDFNRPKPLPARWINNWFDGWDGKA
RIHWPSRGLAVDVDASEGLRQYVVFSPAAAADFFCFEPVTHPVDAFNLPGKAEAHGLK
ILEPDESLAVSARVAADFG"
misc_feature 39863..40702
/locus_tag="SMa0077"
/note="aldose 1-epimerase, similar to Escherichia coli
YphB; Region: Aldose_epim_Ec_YphB; cd09021"
/db_xref="CDD:185698"
misc_feature order(40013..40015,40094..40096,40292..40294,40298..40300,
40451..40453,40553..40555,40592..40594)
/locus_tag="SMa0077"
/note="active site"
/db_xref="CDD:185698"
misc_feature order(40292..40294,40592..40594)
/locus_tag="SMa0077"
/note="catalytic residues [active]"
/db_xref="CDD:185698"
gene 40959..41981
/locus_tag="SMa0078"
/db_xref="GeneID:1235263"
CDS 40959..41981
/locus_tag="SMa0078"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to pckR, regulator of
pckA expression; also similar to LacI/GalR"
/codon_start=1
/transl_table=11
/product="LacI family transcriptional regulator"
/protein_id="NP_435284.1"
/db_xref="GI:16262491"
/db_xref="GeneID:1235263"
/translation="MSSQERKKSRVTLLDVARHASVSRATASLVLRKSPLVGSETRAR
VEQAMRDLGYVYNIGAARLRVERSQIIGAIVPNLTNPFFAELLSGIEEAIGATGKVVI
LANSGERVERQSMLLQRMREHGVDGVVLCPAAGTEPDLSEQLAAWGMPVVQVLRHISV
DMDYVGVDYAGGMRQAVDYLASLGHEKIAFAVHGPFHSAYRERVDGFRDAMLAKAFDP
EILIHLPAQLGEIADSTHLLFAKATQPTAVICFNHLVALGLAAGLHDCGLTIGRDLSL
IGFDDVADAEAIRPRLTSVSTGPTAIGEMAARLLVERIANPDLPPRRVVNDTTLSVRQ
SCGRPA"
misc_feature 40989..41975
/locus_tag="SMa0078"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:224525"
misc_feature 41001..41150
/locus_tag="SMa0078"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(41022..41036,41040..41045,41052..41054,41067..41072,
41079..41081,41118..41120,41127..41129,41136..41141,
41145..41150)
/locus_tag="SMa0078"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 41118..41147
/locus_tag="SMa0078"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 41166..41960
/locus_tag="SMa0078"
/note="Ligand-binding domain of MalI, a transcription
regulator of the maltose system of Escherichia coli and
its close homologs from other bacteria; Region:
PBP1_MalI_like; cd06289"
/db_xref="CDD:107284"
misc_feature order(41166..41168,41205..41213,41220..41225,41229..41234,
41253..41267,41271..41273,41304..41306,41313..41315,
41322..41330,41643..41645,41727..41729,41739..41741,
41748..41753)
/locus_tag="SMa0078"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:107284"
misc_feature order(41202..41207,41214..41216,41349..41351,41421..41423,
41457..41459,41565..41567,41634..41636,41796..41798,
41847..41849)
/locus_tag="SMa0078"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107284"
gene 42106..42774
/locus_tag="SMa0079"
/db_xref="GeneID:1235264"
CDS 42106..42774
/locus_tag="SMa0079"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to amino acid
(glutamine) ABC transporter permease"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435285.1"
/db_xref="GI:16262492"
/db_xref="GeneID:1235264"
/translation="MYEFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWG
KTAGPAILRHVIDGYIEIIRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGA
YGTEIIRAGIESIHKGQVEAGWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLN
TSVVSVISADDLAAAGNDLQSATFASFEVYIAVTLIYLALSVGFSALFYALEKAAFKY
PLGR"
misc_feature 42142..42750
/locus_tag="SMa0079"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:226670"
misc_feature 42163..42720
/locus_tag="SMa0079"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(42211..42216,42223..42228,42241..42243,42271..42282,
42286..42315,42322..42327,42331..42333,42397..42402,
42406..42408,42412..42414,42421..42426,42430..42432,
42442..42447,42454..42456,42505..42507,42547..42552,
42559..42561,42580..42591,42598..42603,42640..42645,
42673..42678,42685..42690,42694..42699,42706..42711,
42718..42720)
/locus_tag="SMa0079"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(42289..42333,42580..42597)
/locus_tag="SMa0079"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(42331..42333,42382..42384,42598..42600,42634..42636,
42643..42645,42673..42675)
/locus_tag="SMa0079"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(42457..42495,42511..42516,42526..42528)
/locus_tag="SMa0079"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 42785..43441
/locus_tag="SMa0081"
/db_xref="GeneID:1235265"
CDS 42785..43441
/locus_tag="SMa0081"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to amino acid ABC
transporter permease"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435286.1"
/db_xref="GI:16262493"
/db_xref="GeneID:1235265"
/translation="MIRAFGWNEFLVIVAAAQWTIALSAIAFAGGSVGGLLVALMRVS
ETRALRLFATGFIRVFQGTPLLMQLFLVFFGMNIFGFAINPWIAATIALALHASAFLG
EIWRGCIEAVPKGQREAATALGLRYFRSMRHVILPQAARIAVAPTVGFLVQLIKGTSL
ASIIGFTELTRQGQIINNATFSPFLVFGTVAAVYFLLCWPLSLIARRMETRFSRATAR
"
misc_feature 42806..43438
/locus_tag="SMa0081"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:226670"
misc_feature 42833..43375
/locus_tag="SMa0081"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(42881..42886,42893..42898,42911..42913,42941..42952,
42956..42985,42992..42997,43001..43003,43067..43072,
43076..43078,43082..43084,43091..43096,43100..43102,
43112..43117,43124..43126,43175..43177,43217..43222,
43229..43231,43250..43261,43268..43273,43310..43315,
43343..43348,43355..43360,43364..43369)
/locus_tag="SMa0081"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(42959..43003,43250..43267)
/locus_tag="SMa0081"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(43001..43003,43052..43054,43268..43270,43304..43306,
43313..43315,43343..43345)
/locus_tag="SMa0081"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(43127..43165,43181..43186,43196..43198)
/locus_tag="SMa0081"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 43471..44286
/locus_tag="SMa0082"
/db_xref="GeneID:1235266"
CDS 43471..44286
/locus_tag="SMa0082"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to amino acid ABC
transporter periplasmic amino acid-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435287.1"
/db_xref="GI:16262494"
/db_xref="GeneID:1235266"
/translation="MRREGLMNISRRIAISVLGAAIVAGLVAPAAAQTVETIKSAGTV
KVGMLVDFPPFGIMDANNQPDGYDADVAKLLAKELGVEVTIVPVTGPNRIPYLQSNQV
DLLVASLGITEERAKNVDFSQPYAGISIGVFGAADLAVTKPEDLAGKTIGVARASTQD
TATTKIAPQDANIQRFDDDASAVQALLSGQVELIGVSNVVAAQIEAAAPGRFNQKLQL
SQQVQGIAVRKGSSEMLKFVNGFLDKVKADGQLNAIHEKWLGSPLPEFVTEAK"
misc_feature 43600..44250
/locus_tag="SMa0082"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:215950"
misc_feature 43600..44247
/locus_tag="SMa0082"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature order(43624..43626,43738..43740,43813..43815,43942..43944,
44059..44061)
/locus_tag="SMa0082"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature order(44008..44010,44020..44022,44038..44040)
/locus_tag="SMa0082"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature 44125..44142
/locus_tag="SMa0082"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene 44302..45081
/locus_tag="SMa0083"
/db_xref="GeneID:1235267"
CDS 44302..45081
/locus_tag="SMa0083"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to amino acid ABC
transporter ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435288.1"
/db_xref="GI:16262495"
/db_xref="GeneID:1235267"
/translation="MNTEREYASPPDSREALDPAVRMEGVNKWYDAFHALKNIDLTVG
RGERIVICGPSGSGKSTLIRCINQLETIHSGRIVVDGHDLTAGGRNVDLVRQETGMVF
QQFNLFPHMTVLENCTLAPMKVRGLAKAEAEETAMKYLKRVRIPEQAVKYPAQLSGGQ
QQRVAIARALCMNPKIMLFDEPTSALDPEMVKEVLDTMVDLANEGMTMLCVTHEMGFA
RSVADRVVFMDRGEVLEIAPPDAFFGAPQHERTRFFLGQIS"
misc_feature 44356..45078
/locus_tag="SMa0083"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:224051"
misc_feature 44362..45000
/locus_tag="SMa0083"
/note="ATP-binding cassette domain of the histidine and
glutamine transporters; Region: ABC_HisP_GlnQ; cd03262"
/db_xref="CDD:213229"
misc_feature 44458..44481
/locus_tag="SMa0083"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213229"
misc_feature order(44467..44472,44476..44484,44608..44610,44839..44844,
44938..44940)
/locus_tag="SMa0083"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213229"
misc_feature 44599..44610
/locus_tag="SMa0083"
/note="Q-loop/lid; other site"
/db_xref="CDD:213229"
misc_feature 44767..44796
/locus_tag="SMa0083"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213229"
misc_feature 44827..44844
/locus_tag="SMa0083"
/note="Walker B; other site"
/db_xref="CDD:213229"
misc_feature 44851..44862
/locus_tag="SMa0083"
/note="D-loop; other site"
/db_xref="CDD:213229"
misc_feature 44926..44946
/locus_tag="SMa0083"
/note="H-loop/switch region; other site"
/db_xref="CDD:213229"
gene 45099..46052
/locus_tag="SMa0085"
/db_xref="GeneID:1235268"
CDS 45099..46052
/locus_tag="SMa0085"
/note="glimmer prediction; similar to D-isomer specific
2-hydroxyacid"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435289.1"
/db_xref="GI:16262496"
/db_xref="GeneID:1235268"
/translation="MEFRNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEA
ALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGV
LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIG
RALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVD
ASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTP
NTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTVN"
misc_feature 45117..46049
/locus_tag="SMa0085"
/note="Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism /
General function prediction only]; Region: LdhA; COG1052"
/db_xref="CDD:223980"
misc_feature 45120..46022
/locus_tag="SMa0085"
/note="Hydroxy(phenyl)pyruvate Reductase,
D-isomer-specific 2-hydroxyacid-related dehydrogenase;
Region: HPPR; cd12156"
/db_xref="CDD:240633"
misc_feature order(45264..45266,45330..45338,45405..45407,45804..45806,
45945..45947)
/locus_tag="SMa0085"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:240633"
misc_feature order(45333..45338,45417..45419,45561..45575,45627..45638,
45714..45722,45735..45737,45798..45806,45876..45878,
45945..45947,45951..45956)
/locus_tag="SMa0085"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:240633"
misc_feature order(45804..45806,45891..45893,45945..45947)
/locus_tag="SMa0085"
/note="catalytic site [active]"
/db_xref="CDD:240633"
gene 46069..46401
/locus_tag="SMa0087"
/db_xref="GeneID:1235269"
CDS 46069..46401
/locus_tag="SMa0087"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435290.1"
/db_xref="GI:16262497"
/db_xref="GeneID:1235269"
/translation="MIVRQALFEGTIRPGREQAFRGYVEEKLVPLWRAFPGVREVRVL
HAVDRDEGAPAFAMILSTTYDDREALARALASPVRYESRELTKGLLEMFEGHIHHHVF
DLDARSTA"
misc_feature 46120..>46299
/locus_tag="SMa0087"
/note="EthD domain; Region: EthD; cl17553"
/db_xref="CDD:248107"
gene 46684..47100
/locus_tag="SMa0089"
/db_xref="GeneID:1235270"
CDS 46684..47100
/locus_tag="SMa0089"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435291.1"
/db_xref="GI:16262498"
/db_xref="GeneID:1235270"
/translation="MKRNEQMTRRDAVFPANRHALYEAHGYSAAIRSGDLLFVSGQVG
SRSDGSPEPDFGRQVQLAFDNLRATLNAAGCTFDDIVDVTTFHTDPENQFETIMAVKN
QVFGTPPYPNWTALGVNWLAGFDFEIKVIARIPEAA"
misc_feature 46756..47085
/locus_tag="SMa0089"
/note="YjgH belongs to a large family of
YjgF/YER057c/UK114-like proteins present in bacteria,
archaea, and eukaryotes with no definitive function. The
conserved domain is similar in structure to chorismate
mutase but there is no sequence similarity and no...;
Region: YjgH_like; cd02198"
/db_xref="CDD:100005"
misc_feature order(46762..46767,46774..46776,46780..46782,46789..46791,
46795..46797,46801..46806,46918..46920,46924..46929,
46933..46935,46939..46941,46975..46977,46984..46986,
46996..46998,47011..47037,47062..47064,47068..47070,
47074..47076)
/locus_tag="SMa0089"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100005"
misc_feature order(46762..46764,46963..46965,46975..46977,47020..47022,
47062..47064)
/locus_tag="SMa0089"
/note="putative active site [active]"
/db_xref="CDD:100005"
gene 47225..47920
/locus_tag="SMa0091"
/db_xref="GeneID:1235271"
CDS 47225..47920
/locus_tag="SMa0091"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435292.1"
/db_xref="GI:16262499"
/db_xref="GeneID:1235271"
/translation="MKTALAVFGGFVLSLALFLSGAVVAVLFLTGKPARQPQLDVNQS
EVWTKQPRAVDRTAQQFERLPARPAPSDVNASREPETPAMANEAEKERSPEPLDRMAT
ASIQSPPAEEEPTASTVPAAHAEWCARRYRSYRPFDNTYRSFSGGRRSCNSPYMDAAW
GPSEDPSPVPRGIDAEDADDPSTQMEYSAGDGEAIRLTQEHVAYCFSRYRSYRPEDNS
YQPYSGGPRRQCR"
misc_feature 47588..47680
/locus_tag="SMa0091"
/note="BA14K-like protein; Region: BA14K; pfam07886"
/db_xref="CDD:203793"
misc_feature 47822..47917
/locus_tag="SMa0091"
/note="BA14K-like protein; Region: BA14K; pfam07886"
/db_xref="CDD:203793"
gene 48182..49033
/locus_tag="SMa0093"
/db_xref="GeneID:1235272"
CDS 48182..49033
/locus_tag="SMa0093"
/EC_number="2.6.1.21"
/function="Small molecule metabolism; Degradation; amino
acids"
/note="glimmer prediction. Interconversion of pyruvate and
D-alanine. Similar to Smc01047 of S. meliloti chromosome"
/codon_start=1
/transl_table=11
/product="Branched-chain amino acid aminotransferase"
/protein_id="NP_435293.1"
/db_xref="GI:16262500"
/db_xref="GeneID:1235272"
/translation="MGRIVYVHGQFVPEEEARIGLFDRGFLFGDAVYEVTAVIGGRMI
DNDLHLGRLERSLRELAIPLGLSRKEIAGVQAELIARNALLDGTVYLQVSRGEADRDF
LYSDALAPRLVGFTQAKTLTGTKAQQDGISVDLADDPRWHRRDIKTAMLLGQVMAKQA
ARARGFDDVWLVENGLVTEGASSTAHVITGDGRILTRAASRATLPGCTQRALALLCAA
EDLAIEERAFTPNEAQAAAEAFQTSASSLVMPVVRIGERVVGNGKPGPMTRKLQALYL
EAAGVPV"
misc_feature 48182..49018
/locus_tag="SMa0093"
/note="PyridoxaL 5'-Phosphate Dependent Enzymes class IV
(PLPDE_IV). This D-amino acid superfamily, one of five
classes of PLPDE, consists of branched-chain amino acid
aminotransferases (BCAT), D-amino acid transferases
(DAAT), and...; Region: PLPDE_IV; cl00224"
/db_xref="CDD:241702"
misc_feature 48188..49018
/locus_tag="SMa0093"
/note="Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism];
Region: IlvE; COG0115"
/db_xref="CDD:223193"
misc_feature order(48254..48259,48263..48268,48272..48274,48278..48280,
48356..48358,48449..48451,48455..48457,48518..48520,
48626..48628,48638..48640,48644..48646,48656..48658,
48698..48700)
/locus_tag="SMa0093"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238254"
misc_feature order(48278..48280,48335..48337,48620..48622,48716..48718,
48800..48805,48911..48913)
/locus_tag="SMa0093"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:238254"
misc_feature order(48335..48337,48620..48622,48716..48718)
/locus_tag="SMa0093"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:238254"
misc_feature 48620..48622
/locus_tag="SMa0093"
/note="catalytic residue [active]"
/db_xref="CDD:238254"
gene 49084..50121
/locus_tag="SMa0095"
/db_xref="GeneID:1235273"
CDS 49084..50121
/locus_tag="SMa0095"
/EC_number="3.4.11.19"
/function="Macromolecule metabolism; Macromolecule
degradation; degradation of proteins, peptides,
glycopeptides"
/codon_start=1
/transl_table=11
/product="D-aminopeptidase"
/protein_id="NP_435294.1"
/db_xref="GI:16262501"
/db_xref="GeneID:1235273"
/translation="MKTARELGLIPQGRLEPGPGNAITDVAGVSVGHRSLRGEGLFTG
VTAILPHAGDVFRVKPRAAVEVINGFGKSAGLMQVAEIGTIETPIVLTNTFGVAACTE
ALVRRAISANPAIGRKTSTVNALVCECNDGSINDIQALAVTPADAEAALDAARTGPVE
QGAVGAGSGMTAFGFKAGIGTASRRMRVGKRDFTLGTLVLANFGAAGDLVLPDGRRPD
PRVPAGPERGSVIVVMATDLPLADRQLQRVARRAGAGLARLGAFWGHGSGDVALCFTT
ADPVEHEPATAFTTQERLADGHIDIAFRAAADTTQEAVLNALCMAPAMPARNGRIYPC
LADWLMENPSP"
misc_feature 49120..50106
/locus_tag="SMa0095"
/note="L-Aminopeptidase D-amidase/D-esterase (DmpA)
family; DmpA catalyzes the release of N-terminal D and L
amino acids from peptide susbtrates. DmpA is synthesized
as a single polypeptide precursor, which is
autocatalytically cleaved to the active...; Region: DmpA;
cd02253"
/db_xref="CDD:239071"
misc_feature order(49264..49266,49324..49329,49810..49812,49822..49824,
49831..49833,49954..49968,49972..49974)
/locus_tag="SMa0095"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239071"
misc_feature order(49279..49290,49294..49302,49306..49308,49312..49317,
49324..49326,49366..49368,49375..49377,49399..49401,
49471..49473,49831..49836,49867..49881,49969..49971,
49981..49983,49990..49992)
/locus_tag="SMa0095"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:239071"
misc_feature order(49471..49473,49687..49689,49768..49770,49882..49887)
/locus_tag="SMa0095"
/note="active site pocket [active]"
/db_xref="CDD:239071"
misc_feature 49765..49770
/locus_tag="SMa0095"
/note="cleavage site"
/db_xref="CDD:239071"
gene complement(50138..51079)
/locus_tag="SMa0097"
/db_xref="GeneID:1235274"
CDS complement(50138..51079)
/locus_tag="SMa0097"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with HTH domain, similar to
LysR family"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435295.1"
/db_xref="GI:16262502"
/db_xref="GeneID:1235274"
/translation="MEIKWLEDFVTLADTSSFSRAAELRNVTQPAFSRRIKQLESWLG
ATLISRATMPAELTPAGRNFLPVAQEAIRTFYAAREVLRLPHEPGLIRFAALHTLTVT
FFPRWLKTLEAAGGSFSTSLIPDRGGIEANLDALVGDEADFFLTYAHPEVPFHLDSGQ
FSSLTVAHDRLIPLVAAEIVLSGDPQPGLNLLDRAIAQPRLAIPYLSYGFNSFFGVAL
SRLLLRRPPFRRRTTHENTISAGLMNMAVTGAGVCWLPESLAREEIDARRLVPASADE
GWNLDLEIRLYRHAASRNRKVEELWATAQRLLEPAPA"
misc_feature complement(50141..51079)
/locus_tag="SMa0097"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(50894..51073)
/locus_tag="SMa0097"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(50153..50815)
/locus_tag="SMa0097"
/note="LysR substrate binding domain; Region:
LysR_substrate; pfam03466"
/db_xref="CDD:217576"
gene 51262..52887
/locus_tag="SMa0101"
/db_xref="GeneID:1235275"
CDS 51262..52887
/locus_tag="SMa0101"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="NP_435296.1"
/db_xref="GI:16262503"
/db_xref="GeneID:1235275"
/translation="MAFGIKADLILINGRIWRGREEGISEALAVWQGKILATGSDTDI
LGLKGPRTEVIDLEGRFATPGLIDNHLHLIATGMAMGWVDATPASAPTLAALMGRISD
RAATTPKGGWVRARGYDQVKLDTGRHPTRDDLDRVAPDHPVLLTRACGHVSIANSRAL
ELAGITEATAVPEGGVIGVTEGRLNGFLAENAQNLVKAAMPSATTEDLIDGIERAGRY
LLSFGITSCMDAAVGQVSGFAEIQAYEMAKLSGRLPVRVWLTLLGDPGVSIVEDCWRA
GLLSGAGDDMLRVGGVKVFLDGSAGGRTAWMTRPYRGEPDNIGVQMLPDAEVEAVVKA
CHDRGYQMVCHAIGDGAIEQLITAYEKALAANPDPDRRHRVEHCGFSTPDQNARMKAA
GILPAPQMAFIHDFGDSYISVLGEERGRLSYPIGTWMRMGLKPSTGSDSPVCSPDPFP
NLHAMLTRQTGKGTVMEASERLSRQEALQTYTEYGAYSQKAEGVKGRLVPGQWADIAV
FDNDLLAAPPETILSDTSCVLTLLAGRVVHDAR"
misc_feature 51268..52884
/locus_tag="SMa0101"
/note="Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only];
Region: COG1574"
/db_xref="CDD:224490"
misc_feature 51340..52785
/locus_tag="SMa0101"
/note="YtcJ_like metal dependent amidohydrolases. YtcJ is
a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling; Region: YtcJ_like;
cd01300"
/db_xref="CDD:238625"
misc_feature order(51469..51471,51475..51477,52294..52296,52390..52392,
52579..52581)
/locus_tag="SMa0101"
/note="active site"
/db_xref="CDD:238625"
gene 52944..54536
/locus_tag="SMa0104"
/db_xref="GeneID:1235276"
CDS 52944..54536
/locus_tag="SMa0104"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to dipeptide
transporter dipeptide-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435297.1"
/db_xref="GI:16262504"
/db_xref="GeneID:1235276"
/translation="MLKRLTLAAMLSLGVAAGALAAGERHGGTLVFTAPYGSSFATLD
VQSSPNTQEEFITQAIHRALYSWDSNQNKPVLELATSEEVSEDGKVHTYHLRKNAVFH
NGKPLTADDIIYSYKRIANPENAFPGASFIAVIKGAEDYIAGKADEISGLKKIDDHTL
EITYTGTINPGFPLMQNTTVIYPSNVEGESTFGKNPVGLGAFVFKEHVPGSQVVVEKF
DKYYEEGRPYLDRINIVLMAEDAARDVAFRNKEIDVSILGPTQYQAYQGEEGLKDHLL
EVAEVYTRNIGFNPAFEPFKDKRVRQAINHAINAPLIIERLVKNKAYPASGWLPISSP
AFDKDKAPYAYDPEKAKALLAEAGYADGFEFEVTASPNESWGVPIVEAILPMLKKVGI
TVKPKPVESSTLGEAVTTNNFQAFIWSNLSGPDPLNALRCYYSKTAQSACNYTSYASP
EFDKLYEAAQQERDSAKQNDLLRQANNIVQDDAPVWFFNYNKAVMAYQPWIHGLVPNA
TELAIQPYDEIWIDETAPSSRQ"
misc_feature 53034..54455
/locus_tag="SMa0104"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cd00995"
/db_xref="CDD:173853"
misc_feature 53037..54506
/locus_tag="SMa0104"
/note="ABC-type dipeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
DdpA; COG0747"
/db_xref="CDD:223818"
gene 54624..55559
/locus_tag="SMa0105"
/db_xref="GeneID:1235277"
CDS 54624..55559
/locus_tag="SMa0105"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to dipeptide transport
system permease"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435298.1"
/db_xref="GI:16262505"
/db_xref="GeneID:1235277"
/translation="MLRFTLRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRR
AADPQMIARLNEEFGLNKPLMERFVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASL
QLAIAAMIFALVISVPLGFVAALRPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFAL
QLNWLPSFGYGDGSFRNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGM
SEAKVVRWHVARNALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDI
PVVQGTILVIVLWFLVINTAVDLIYAAIDPRIKQE"
misc_feature 54624..55556
/locus_tag="SMa0105"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:223674"
misc_feature 54915..55487
/locus_tag="SMa0105"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(54963..54968,54975..54980,54993..54995,55026..55037,
55041..55070,55077..55082,55086..55088,55185..55190,
55194..55196,55200..55202,55209..55214,55218..55220,
55230..55235,55242..55244,55293..55295,55335..55340,
55347..55349,55368..55379,55386..55391,55416..55421,
55449..55454,55461..55466,55470..55475,55482..55487)
/locus_tag="SMa0105"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(55044..55088,55368..55385)
/locus_tag="SMa0105"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(55086..55088,55170..55172,55386..55388,55410..55412,
55419..55421,55449..55451)
/locus_tag="SMa0105"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(55245..55283,55299..55304,55314..55316)
/locus_tag="SMa0105"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 55565..56386
/locus_tag="SMa0106"
/db_xref="GeneID:1235278"
CDS 55565..56386
/locus_tag="SMa0106"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to dipeptide ABC
transporter dipeptide-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435299.1"
/db_xref="GI:16262506"
/db_xref="GeneID:1235278"
/translation="MRLGFNFWLGAGLTTLVILAGILAPWIAPFDPVLDADLMNSELP
PDATFWFGTDGQGRDVYTRILYGAQISLTVGIVSQVINSIIGVTLGMTAGYWGGWWDD
LVNGFTNVMLAIPSLIFALAVMAVLGPGLPSLLIALGLTNWSWTCRIARSSTLSLKSL
GYVQAAQTLGYGDLRIMFTQILPNMMGPILVMATLGMGSAVLSEAALSFLGLGIQPPF
PSWGSMLTDARQLIQLAPWVAIFPGLAIFLSVLGFNLLGDGLRDSLDPHMRTRNP"
misc_feature 55565..56377
/locus_tag="SMa0106"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:224094"
misc_feature 55766..56314
/locus_tag="SMa0106"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(55814..55819,55826..55831,55844..55846,55874..55885,
55889..55918,55925..55930,55934..55936,55985..55990,
55994..55996,56000..56002,56009..56014,56018..56020,
56030..56035,56042..56044,56093..56095,56135..56140,
56147..56149,56168..56179,56186..56191,56231..56236,
56264..56269,56276..56281,56285..56290,56297..56302,
56309..56314)
/locus_tag="SMa0106"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(55892..55936,56168..56185)
/locus_tag="SMa0106"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(55934..55936,55970..55972,56186..56188,56225..56227,
56234..56236,56264..56266)
/locus_tag="SMa0106"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(56045..56083,56099..56104,56114..56116)
/locus_tag="SMa0106"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 56383..57297
/locus_tag="SMa0108"
/db_xref="GeneID:1235279"
CDS 56383..57297
/locus_tag="SMa0108"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to oligopeptide ABC
transporter ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435300.1"
/db_xref="GI:16262507"
/db_xref="GeneID:1235279"
/translation="MTEPLLDIRDLHLGIAVGRSVNRPLLKGVSFQIMPGEAYGLVGE
SGSGKSVTSLAVMGLLKKPLAVSGGEILFKGQNLLELPKREMRRLRGNRIAMIFQEPM
TALNPLSTIGRQIAEMFVLHQGKSWDEAQKLAIEALASVRVPNPDRRARNYPHQMSGG
LRQRVMIAMALACNPDLLIADEPTTALDVTVQAEVLRLIKELCAERGTAVLFISHDLG
VIASICQRVGVMYAGCLVEENETRALFAAPRHEYTRGLLGALPRFGSRSLHGRQRLVD
IDSIIADRSKLIETRFIAPRGAEEGGQP"
misc_feature 56395..57270
/locus_tag="SMa0108"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:223521"
misc_feature 56395..57099
/locus_tag="SMa0108"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 56509..56532
/locus_tag="SMa0108"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(56518..56523,56527..56535,56677..56679,56923..56928,
57025..57027)
/locus_tag="SMa0108"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 56668..56679
/locus_tag="SMa0108"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 56851..56880
/locus_tag="SMa0108"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 56911..56928
/locus_tag="SMa0108"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 56935..56946
/locus_tag="SMa0108"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 57013..57033
/locus_tag="SMa0108"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 57088..>57249
/locus_tag="SMa0108"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:244611"
gene 57294..58256
/locus_tag="SMa0110"
/db_xref="GeneID:1235280"
CDS 57294..58256
/locus_tag="SMa0110"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; oligopeptide ABC transporter
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435301.1"
/db_xref="GI:16262508"
/db_xref="GeneID:1235280"
/translation="MTDPLLEVDDLHVRFSVSGGGLLGTGRRMLHAVNGIGFSLSKGE
CLSIVGESGCGKSTTALSVLGLQEPTEGTIRYRGQPLTGPGAPGRMQRAKAVQMVFQD
PYASLNPRQSVRTSLAAPLRLHGITAASEIADRIEVMLANVGLTPEQANRYPHEFSGG
QRQRIGIARALILEPEIVVLDEPVSALDVSIRAQIINLLLDLQEKLGLGYLMISHDLS
VVEHMSDRVLVMFFGQVVEEGGWRDIFERPAHPYTRRLIAAIPDPDAALNPGTKDHFA
DVPLPDGRSFAVDGSTAPDVFSAPPPSELVEIAPGHRMRLVPAV"
misc_feature 57300..58094
/locus_tag="SMa0110"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:224049"
misc_feature 57306..58010
/locus_tag="SMa0110"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 57441..57464
/locus_tag="SMa0110"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(57450..57455,57459..57467,57594..57596,57834..57839,
57936..57938)
/locus_tag="SMa0110"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 57585..57596
/locus_tag="SMa0110"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 57762..57791
/locus_tag="SMa0110"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 57822..57839
/locus_tag="SMa0110"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 57846..57857
/locus_tag="SMa0110"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 57924..57944
/locus_tag="SMa0110"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 57993..58238
/locus_tag="SMa0110"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:244611"
gene 58298..58612
/locus_tag="SMa5001"
/db_xref="GeneID:6435252"
CDS 58298..58612
/locus_tag="SMa5001"
/note="Has weak similarity to PilT-like proteins and StbB-
like plasmid stability proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000330.1"
/db_xref="GI:193782534"
/db_xref="GeneID:6435252"
/translation="MRKQRVREFPRFGESELLFGIGVLPDGRRKKALTEMLDGVLELF
GDRVLPFDIGAARCYAKLAVTARAAGKEFPTRPTDILPPLPPPGDLSSRQAIPARQSL
PS"
misc_feature <58343..>58510
/locus_tag="SMa5001"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:246722"
gene complement(58803..59234)
/locus_tag="SMa0112"
/db_xref="GeneID:1235281"
CDS complement(58803..59234)
/locus_tag="SMa0112"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435302.1"
/db_xref="GI:16262509"
/db_xref="GeneID:1235281"
/translation="MQAGGVSMTNAQCACGALRLMLNEPPQLTALCHCLACQRRTGAP
FSANAFYSIDCVEISGVSTEYIRTAESGRKVRMHFCPTCGSTLFWKADASPSWIGVAV
GSFADPAFAPPAMSVFERSKHKWVQLEGTVEHFQDLPIGQY"
misc_feature complement(58824..59216)
/locus_tag="SMa0112"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3791"
/db_xref="CDD:226314"
gene 59703..62264
/locus_tag="SMa0113"
/db_xref="GeneID:1235282"
CDS 59703..62264
/locus_tag="SMa0113"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to sensory transduction
histidine kinase with PAS domain"
/codon_start=1
/transl_table=11
/product="Sensor histidine kinase"
/protein_id="NP_435303.1"
/db_xref="GI:16262510"
/db_xref="GeneID:1235282"
/translation="MKSRESPVYMSNVEEFPLTGRVLTEYEALITSAPTALDAIPGAV
YVCDHEGWLVGYNAEAAELWGRQPSLSAPRERFCGSQRLFLSDGSPMDHQECPMAEAI
KTGVSTRNAEVIIERPDGSRIFALVNIRPLRDHRGVIQGAINCFQDISQQKRIEAEVN
CKSKDLEDFFENSAIGLHIVSAAGIILRANKAELELLGYPADEYVGRHIAEFHADAPV
IGDILDRLSCGEKLDRYPARLRARDGSIKHVLITSNSRFEDGKFVNTRCFTTDITSLH
ETENAWRETEERLAATYQAATIGIAESDADGRLLRVNDAFCTMLGRSREQLLNMTFLD
YTHEDDRDEEARCYARQVSGETDTYAIRKRAVKADGTVIYLDVYSSTVRDRTGRFRYG
VRVLLDVTEAKRMDDRRRESEQHMRDLLEALPAAVYTTDAEGRITFFNKAAVEMAGRT
PQIGDKWCVTWRLYRPDGTYLPHDQCPMAVTLKEDRPVRGEQAVAERPDGTRVPFIPY
PTPLHDVAGKLVGAVNMLVDISDREKAAEYAERLASIVRFSDDAIVSKDTQGIIQTWN
KGAERLFGYSAEEVIGKPINILIPPDRQGEEPGILERIRRDEHIDHYETVRIRKDGSL
IDVSLTVSPLKDARGRVVGASKIARDITERRRSEEHRKLLVNELNHRVKNTLATVQSL
AAQTFRGVNASEDFGRFQSRLVALARAHDVLTRESWQGADLGEVLHATINPICVEPQQ
RVQASGPPLRLRPKMALALSMAFHELCTNAAKYGALTNDGGLIKVNWHVSNIESVSHL
HLQWEEIGGPSVMVPARTGFGTRLLERALARELGGKVDLVFAPSGVRFHIEAPLT"
misc_feature 59820..60149
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature 59829..60539
/locus_tag="SMa0113"
/note="FOG: PAS/PAC domain [Signal transduction
mechanisms]; Region: AtoS; COG2202"
/db_xref="CDD:225112"
misc_feature order(59868..59870,59880..59882,59898..59900,59952..59963,
60045..60047,60060..60062)
/locus_tag="SMa0113"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(59946..59948,59955..59957,59979..59981,59988..59993,
60081..60083,60087..60089)
/locus_tag="SMa0113"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature 60219..60518
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature 60237..60914
/locus_tag="SMa0113"
/note="FOG: PAS/PAC domain [Signal transduction
mechanisms]; Region: AtoS; COG2202"
/db_xref="CDD:225112"
misc_feature order(60267..60269,60279..60281,60297..60299,60336..60338,
60339..60341,60417..60419,60432..60434)
/locus_tag="SMa0113"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(60327..60329,60357..60359,60366..60371,60453..60455,
60459..60461)
/locus_tag="SMa0113"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature 60588..60899
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature 60597..61307
/locus_tag="SMa0113"
/note="FOG: PAS/PAC domain [Signal transduction
mechanisms]; Region: AtoS; COG2202"
/db_xref="CDD:225112"
misc_feature order(60636..60638,60648..60650,60666..60668,60705..60716,
60795..60797,60810..60812)
/locus_tag="SMa0113"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(60696..60698,60708..60710,60732..60734,60741..60746,
60831..60833,60837..60839)
/locus_tag="SMa0113"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature 60969..61289
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature order(61017..61019,61029..61031,61047..61049,61089..61100,
61185..61187,61200..61202)
/locus_tag="SMa0113"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(61071..61073,61092..61094,61119..61121,61128..61133,
61221..61223,61227..61229)
/locus_tag="SMa0113"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature 61320..61679
/locus_tag="SMa0113"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:232884"
misc_feature 61347..61655
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature order(61395..61397,61407..61409,61425..61427,61464..61475,
61566..61568)
/locus_tag="SMa0113"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(61455..61457,61467..61469,61500..61502,61509..61514,
61587..61589,61593..61595)
/locus_tag="SMa0113"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature 61632..62261
/locus_tag="SMa0113"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:226434"
misc_feature 61701..61946
/locus_tag="SMa0113"
/note="HWE histidine kinase; Region: HWE_HK; pfam07536"
/db_xref="CDD:148894"
gene 62292..62654
/locus_tag="SMa0114"
/db_xref="GeneID:1235283"
CDS 62292..62654
/locus_tag="SMa0114"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with response regulator
receiver domain"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="NP_435304.1"
/db_xref="GI:16262511"
/db_xref="GeneID:1235283"
/translation="MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALD
IARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGYGSKGLDTRYSNIPLLTK
PFLDSELEAVLVQISKEV"
misc_feature 62316..62630
/locus_tag="SMa0114"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(62325..62330,62460..62462,62484..62486,62538..62540,
62571..62573,62595..62600)
/locus_tag="SMa0114"
/note="active site"
/db_xref="CDD:238088"
misc_feature 62460..62462
/locus_tag="SMa0114"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(62469..62474,62478..62486)
/locus_tag="SMa0114"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 62595..62603
/locus_tag="SMa0114"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene 63200..64117
/locus_tag="SMa0116"
/db_xref="GeneID:1235284"
CDS 63200..64117
/locus_tag="SMa0116"
/function="Cell processes; Chaperoning"
/note="glimmer prediction, sequence similarity to DnaJ and
CbpA (co-chaperone-curved DNA binding protein)"
/codon_start=1
/transl_table=11
/product="DnaJ/CbpA-type protein"
/protein_id="NP_435305.2"
/db_xref="GI:193782535"
/db_xref="GeneID:1235284"
/translation="MTDDPYQILGVPRTGKPDEIRKAYRKRAKELHPDLHPGDKEVET
KFKALSAAYHLLSDPEQRARFDRGEIDASGAERPQQHFYRHYADADHARRYGSAGGTG
EFEDVSDIFADLFGQGGAGGRFKARGQDRHYHLELEFLDAVNGARRRITFPDGNTLDL
AIPAGTRDGSTLRLRGKGTPGIAGGEPGDALIEISVRSHSVFRREGNDIEIDLPITLY
EAVLGAKIEVPTISGRVSMTIPKGSNTGDILRLRGKGVKSQHGPAGDQRVTLKVVLPT
ATDPDLERFMETWRRSHAYDPREALGRAT"
misc_feature 63209..64111
/locus_tag="SMa0116"
/note="curved DNA-binding protein CbpA; Provisional;
Region: PRK10266"
/db_xref="CDD:182347"
misc_feature 63209..63373
/locus_tag="SMa0116"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(63293..63301,63326..63328,63335..63340,63347..63352)
/locus_tag="SMa0116"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 63584..64027
/locus_tag="SMa0116"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature order(63596..63598,63641..63658,63662..63664,63734..63736)
/locus_tag="SMa0116"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature order(63848..63853,63860..63865,63923..63934,64019..64027)
/locus_tag="SMa0116"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 64114..64452
/locus_tag="SMa0117"
/db_xref="GeneID:1235285"
CDS 64114..64452
/locus_tag="SMa0117"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435306.1"
/db_xref="GI:16262513"
/db_xref="GeneID:1235285"
/translation="MKLTERQVLEQFDIVTRKQLRQWVHSGWIVPAQGERGPSFDDVD
VARIRLVCELRRDMNVNDDAVPIILALLDQLYGLRRELRTIATALLEQPDEVRQQLKQ
ALLSPIGQQH"
misc_feature 64156..64365
/locus_tag="SMa0117"
/note="MerR HTH family regulatory protein; Region: MerR_2;
pfam13591"
/db_xref="CDD:205769"
gene 64679..65206
/locus_tag="SMa0118"
/db_xref="GeneID:1235286"
CDS 64679..65206
/locus_tag="SMa0118"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; partial homology to alcohol"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435307.1"
/db_xref="GI:16262514"
/db_xref="GeneID:1235286"
/translation="MFRLGIGFACFATSAFGLQPLGAAADDPAIARGEYLVTMGGCND
CHTPGYFFGKPDSSRFLGGSDVGFEIPGEGVFIGRNITPDKETGIGSWTREQIVTAIQ
TGQRPDGRMLAPIMPWHAFAQLTKEDAGAIAAFLQSLKPVSHQVPGPFKPGEKVSTFM
FRILPPGETAAAAPK"
misc_feature 64679..65095
/locus_tag="SMa0118"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:224921"
gene complement(65491..65658)
/locus_tag="SMa0121"
/db_xref="GeneID:1235287"
CDS complement(65491..65658)
/locus_tag="SMa0121"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435308.1"
/db_xref="GI:16262515"
/db_xref="GeneID:1235287"
/translation="MIRFERKPDPQPSLKEAENKRTKQISEAAKEENKKSGTTGAPRR
APQAADDDRLI"
gene complement(65729..66112)
/locus_tag="SMa0123"
/db_xref="GeneID:1235288"
CDS complement(65729..66112)
/locus_tag="SMa0123"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435309.1"
/db_xref="GI:16262516"
/db_xref="GeneID:1235288"
/translation="MQNSKTSITQQFGSYKPSKAILVWACVATAAATMIVGFNWGGWV
TGGTSRTAAAAAADIARGELASAICVERFNAAPDAAAKLIEFKAITDGYKKRQFVEAG
GWATMPGETAPDSRSVQGCATALAI"
gene complement(66192..67826)
/gene="groEL"
/locus_tag="SMa0124"
/db_xref="GeneID:1235289"
CDS complement(66192..67826)
/gene="groEL"
/locus_tag="SMa0124"
/function="Cell processes; Chaperoning"
/note="60 kDa chaperone family; promotes refolding of
misfolded polypeptides especially under stressful
conditions; forms two stacked rings of heptamers to form a
barrel-shaped 14mer; ends can be capped by GroES;
misfolded proteins enter the barrel where they are
refolded when GroES binds; the rhizobia and high GC
gram-positive bacteria have multiple copies of the groEL
gene which are active under different environmental
conditions; the R. leguminosarum protein in this cluster
is transcribed under anaerobic conditions and is not
necessary for growth"
/codon_start=1
/transl_table=11
/product="molecular chaperone GroEL"
/protein_id="NP_435310.1"
/db_xref="GI:16262517"
/db_xref="GeneID:1235289"
/translation="MSAKQIVFSTDARDRLLRGVELLNNAVKVTLGPKGRNVVIDKSY
GAPRITKDGVSVAKEIELEDKFENMGAQMVRAVASKTNDLAGDGTTTATVLAASIFRE
GAKLVSVGMNPMDLKRGIDLGVAAVLAEIKARATKVISSSEIAQVGTIAANGDAGVGE
MIARAMEKVGNEGVITVEEARTADTELDVVEGMQFDRGYLSPYFVTNAEKMRVELEDP
YILIHEKKLGSLQAMLPILEAAVQSGKPLLIISEDVEGEVLATLVVNRLRGGLKIAAV
KTPGFGDRRKAMLEDIAVLTAGQMISEDLGIKLENVTLDMLGRARRVLIEKDTTTIID
GSGDKASIQARVSQIKAQIEETASDYDKEKLQERLAKLAGGVAVIRVGGATELEVKEK
KDRIDDALNATRAAVEEGIVPGGGVALLRAKSALVGLTDDNADVTAGISIVRRALEAP
IRQIADNAGVEGSIVVGKLVDGRDHNQGFDAQTETYVDMIKAGIVDPAKVVRTALRDA
GSIASLLITAEAMIADIPERGSPQSTGNGAVDSMGY"
misc_feature complement(66195..67826)
/gene="groEL"
/locus_tag="SMa0124"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12850"
/db_xref="CDD:237231"
misc_feature complement(66255..67817)
/gene="groEL"
/locus_tag="SMa0124"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:239460"
misc_feature complement(order(66258..66278,66285..66287,66450..66452,
66669..66671,66675..66677,67056..67058,67140..67142,
67236..67238,67599..67601,67608..67610,67620..67622,
67644..67646,67650..67652,67680..67682,67686..67691,
67704..67706,67710..67721,67752..67754,67803..67805,
67815..67817))
/gene="groEL"
/locus_tag="SMa0124"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:239460"
misc_feature complement(order(66339..66341,66345..66347,66465..66467,
66582..66584,66633..66635,67377..67379,67554..67556,
67566..67568,67728..67736))
/gene="groEL"
/locus_tag="SMa0124"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:239460"
misc_feature complement(order(66426..66428,66435..66440,66444..66446,
66471..66473,66525..66527,67500..67502))
/gene="groEL"
/locus_tag="SMa0124"
/note="stacking interactions; other site"
/db_xref="CDD:239460"
misc_feature complement(order(66597..66602,66702..66704,67248..67250,
67269..67271,67404..67406))
/gene="groEL"
/locus_tag="SMa0124"
/note="hinge regions; other site"
/db_xref="CDD:239460"
gene complement(67874..68191)
/gene="groES"
/locus_tag="SMa0125"
/db_xref="GeneID:1235290"
CDS complement(67874..68191)
/gene="groES"
/locus_tag="SMa0125"
/function="Cell processes; Chaperoning"
/note="10 kDa chaperonin; Cpn10; GroES; forms
homoheptameric ring; binds to one or both ends of the
GroEL double barrel in the presence of adenine nucleotides
capping it; folding of unfolded substrates initiates in a
GroEL-substrate bound and capped by GroES; release of the
folded substrate is dependent on ATP binding and
hydrolysis in the trans ring"
/codon_start=1
/transl_table=11
/product="co-chaperonin GroES"
/protein_id="NP_435311.1"
/db_xref="GI:16262518"
/db_xref="GeneID:1235290"
/translation="MTFRPLLDRVVIRRAEGNTQSKGGIIIPDTAKEKPQEGEVIAVG
PGSRDESGKLIPLDVKIGDTILFGKWSGTEVKIDGEDLLIMKESDIMGIVANTVPTAA
NAA"
misc_feature complement(67913..68188)
/gene="groES"
/locus_tag="SMa0125"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:238197"
misc_feature complement(order(67913..67921,67967..67969,67973..67975,
67988..67990,68018..68020,68081..68086,68165..68167,
68174..68176,68180..68182,68186..68188))
/gene="groES"
/locus_tag="SMa0125"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:238197"
misc_feature complement(68099..68140)
/gene="groES"
/locus_tag="SMa0125"
/note="mobile loop; other site"
/db_xref="CDD:238197"
misc_feature complement(order(68024..68026,68057..68059))
/gene="groES"
/locus_tag="SMa0125"
/note="roof hairpin; other site"
/db_xref="CDD:238197"
gene 68805..69014
/gene="cspA8"
/locus_tag="SMa0126"
/db_xref="GeneID:1235291"
CDS 68805..69014
/gene="cspA8"
/locus_tag="SMa0126"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; C-terminus with CSD,
'Cold-shock' DNA-binding domain"
/codon_start=1
/transl_table=11
/product="CspA8 Cold shock family protein"
/protein_id="NP_435312.1"
/db_xref="GI:16262519"
/db_xref="GeneID:1235291"
/translation="MTTGTVKWFNSTKGFGFIAPDDGSADVFVHISAVERAGMNSIVE
GQKLGFELERDNKSGKMSAGQLRAA"
misc_feature 68811..68975
/gene="cspA8"
/locus_tag="SMa0126"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein; Region:
CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature order(68826..68828,68853..68855,68886..68888,68973..68975)
/gene="cspA8"
/locus_tag="SMa0126"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:88424"
misc_feature order(68844..68864,68883..68894)
/gene="cspA8"
/locus_tag="SMa0126"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene 69135..69515
/locus_tag="SMa0128"
/db_xref="GeneID:1235292"
CDS 69135..69515
/locus_tag="SMa0128"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435313.1"
/db_xref="GI:16262520"
/db_xref="GeneID:1235292"
/translation="MRHPSDNGFAERRNAAADAKRQLLTKFASAPKPTDPEMREKLAA
REAASRARDARRAEREALKTAENERILAEAAASAAAAEAEQRAEAEARQAEISNRVSR
VVADEAARKAERDRRYAARKARRA"
gene 69601..70668
/locus_tag="SMa0130"
/db_xref="GeneID:1235293"
CDS 69601..70668
/locus_tag="SMa0130"
/EC_number="1.14.99.-"
/function="Small molecule metabolism; Fatty acid
biosynthesis"
/note="glimmer prediction, C-terminus with fatty acid
desaturase domain"
/codon_start=1
/transl_table=11
/product="fatty acid desaturase"
/protein_id="NP_435314.1"
/db_xref="GI:16262521"
/db_xref="GeneID:1235293"
/translation="MSAHVYPPASLVEDNAGAWLKTLAKYRQPRLGRSAFELFVTLVP
FAIFWAAACFSLANGFWPGLIAILPASAFLLRLFMIQHDCGHGSFFSRRGLDDWTGRL
LGVLTLTPYDYWRRAHAAHHATAGNLDERGVGDITTLTITEYCALSPIKRLGYRLYRH
PLVMFGIGPAWLFLFKQRLPFGMMNSGALPWISTMATNFAIVTLAALMVWAVGLGTFL
LIHLPVVLLAGAAGVWLFYVQHQFEETHWSAGEDWRFPQAALHGASHYDLPPVLRWLT
GNIGIHHVHHLSSRIPYYRLPEVLRDHPQLAGIGRITLWDSLKCVRLVLWDDRRRRLV
SFHDAAGSLRRSLTEDGRKTK"
misc_feature 69697..70488
/locus_tag="SMa0130"
/note="The Delta12 Fatty Acid Desaturase
(Delta12-FADS)-like CD includes the integral-membrane
enzymes, delta-12 acyl-lipid desaturases, oleate
12-hydroxylases, omega3 and omega6 fatty acid desaturases,
and other related proteins, found in a wide range of...;
Region: Delta12-FADS-like; cd03507"
/db_xref="CDD:239584"
misc_feature 69775..70548
/locus_tag="SMa0130"
/note="Fatty acid desaturase; Region: FA_desaturase;
pfam00487"
/db_xref="CDD:215943"
misc_feature order(69844..69846,69856..69858,69952..69954,69961..69966,
70444..70446,70453..70458)
/locus_tag="SMa0130"
/note="putative di-iron ligands [ion binding]; other site"
/db_xref="CDD:239584"
gene 70668..70955
/locus_tag="SMa0132"
/db_xref="GeneID:1235294"
CDS 70668..70955
/locus_tag="SMa0132"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435315.1"
/db_xref="GI:16262522"
/db_xref="GeneID:1235294"
/translation="MIELTPTQIRGLKLAKDGDVHPQAGKRWTHLNAQVTYAKQDRFK
ERPQKIKFLTTATLNELRDHRLVKALNTDVPPEESAHGITMAGKMLLLKIK"
gene complement(71066..71671)
/locus_tag="SMa0134"
/db_xref="GeneID:1235295"
CDS complement(71066..71671)
/locus_tag="SMa0134"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; similar to Smb20087 of S.
meliloti pSymb"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435316.1"
/db_xref="GI:16262523"
/db_xref="GeneID:1235295"
/translation="MRTVTGLFDDYGDAREAVSDLEAAGVPSDDISIVANNIGDRYST
DGSNAAEGAGTGAGLGAAGGGVVGLLTGLGLMAIPGVGPVVAAGWLASTAAGAAAGAI
AGGAAGGLIGALTESGVDEEDAHVYAEGVRRGGTLVTARVEDSVAPRAEAILKQRKIV
DPAARRSIYAQEGWSRFDENADPYTLDQVDRERERYRSMMP"
gene complement(71712..72026)
/locus_tag="SMa5002"
/db_xref="GeneID:6435253"
CDS complement(71712..72026)
/locus_tag="SMa5002"
/note="Similar to S; meliloti SMb20086 and to
Agrobacterium tumefaciens Atu5288 & Atu5493"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000331.1"
/db_xref="GI:193782536"
/db_xref="GeneID:6435253"
/translation="MKNIIIVAAALMSAATTASLAQTTPSSEGETPAVATPDSQNPTA
PVEGANSFTEAQAKERIEEAGYTDVSGLKLDDKGVWQATAMKEGKSVSVALDYQGNVT
AQ"
gene 72274..74286
/locus_tag="SMa0136"
/db_xref="GeneID:1235296"
CDS 72274..74286
/locus_tag="SMa0136"
/function="Miscellaneous; Unknown"
/note="glimmer prediction, partial conserved with
hypothetical membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435317.2"
/db_xref="GI:193782537"
/db_xref="GeneID:1235296"
/translation="MLKFSRGIDQDRAATAGGLQQIAFARGSAAAAQPSRLPTLVATA
AAVAVLYFARDVFLPLAIAILLTFALAPLVSRLRRVGCPRSVAVIGTVTTAFLFLSAF
GVVIAMQVSEVAQNLPTYQYNIVEKVRTLKETGSESQILERIGRVIERISTEISRPEP
EVRASPEPTPETKPLLVEIFSPQRPIETLKNIINPLLGPLATTGLVIVVVIFMLLERE
ELRDRFIRLVGYGDLHRTTEALQDAGARVGRYLLMQLVVNITYGIPLAIGLSLLGIPN
AVLWGMLAIVLRFVPYIGPVIAAALPLFLAFAAAPGWSLLVWTAALFIVLELLSNNVV
EPWLYGSRTGLSPLAIIVAAIFWAWLWGPVGLVLSTPLTVCLVVLGRHVPQFEFLEIL
LGNEPVLDPKERLYQRLLAGDPDEATDNAEDMLQEKYLVEFYDTVAIPALLLAERDRA
RGALTNTQAAQIAQSANTLIANLEEIAGEEEGEEETSTEAQESDDDNDDAEEYDLPPG
DGKSVLCVGGRSDLDDVTASMLAQTLWIQGADAAHATHEVLKAGNIKALQLEGRNAVV
LSVLDQDFMRHAKFTVRRLKRIAPAARVGIVLWKEDGRPGTTERDQLIESLQADFVVF
GMGDAVREALSDELPRSLKLAHPKIAPGYAMRRSKRTDTESTVKAD"
misc_feature 72493..73467
/locus_tag="SMa0136"
/note="Predicted permease, member of the PurR regulon
[General function prediction only]; Region: yhhT; COG0628"
/db_xref="CDD:223701"
misc_feature 72493..73410
/locus_tag="SMa0136"
/note="Domain of unknown function DUF20; Region: UPF0118;
pfam01594"
/db_xref="CDD:216594"
gene 74378..76579
/locus_tag="SMa0137"
/db_xref="GeneID:1235297"
CDS 74378..76579
/locus_tag="SMa0137"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction, C-terminus similar to nitrogen
fixation positive activator protein"
/codon_start=1
/transl_table=11
/product="Diguanylate cyclase/phosphodiesterase"
/protein_id="NP_435318.2"
/db_xref="GI:193782538"
/db_xref="GeneID:1235297"
/translation="MRFVAGKVAVFRWMLPLAIAMALMGGIYLAVRWSAQQSDAVAVK
RQQHLVELVISKMQGSIAHDQESVTVWDDAVRKVSQEWDPRWVDSNLGSWMNSYFRHD
GAFVISPDRKPLYAFLAGQTNEQEAFSEIGPEAMPLIAKLQERLAAGDEGGTSEQVLS
IGESDLVRIGGRPAIISVKPIVSDTGDIVQEPGREYLHLAARFLDGDFLTHLGDDYGF
EDLRFSVLPELGRQRSYAPIVSSSRETIGYFSWLPFRPGADVMKATAPVLLVAGALLF
ALTSALSVVLRRRSRRLQESQAELDHLARHDPLTGLANRASFNRLLARVVATSTIDQA
NALLYLDLDRFKQVNDTLGHPVGDRLMVEVAKRLKETAAGAAISRIGGDEFTIIVART
RQDEVEKLCDALIAAIRRPFEIDGQPILIGLSIGVAVATGNDADPIEITRKADIALYH
AKSAGRNRYAVFGPHMDELIRTKRDLEQDLRAALDAGNQLEVFYQPVYSAQSHEISSL
EALIRWRHPSKGPIAPDAFVPLAETAGLIDRLGAFVLKEACSTAREFPGLDIAVNVSA
VELAQRHYAAQVLSLLRQFGIEPSRLELEITETALLDEAGVCEKNITALREFGVKFAL
DDFGTGFSSFGRLQRLEVDRIKIDRSFVHAFDRPGGGVAVVQSIVGIAHAKGLRITAE
GVETEEQSEILRKLGCDELQGFHLSRPMSKNSLRQLLGADKAQGTSSSSRS"
misc_feature 74378..75163
/locus_tag="SMa0137"
/note="Predicted periplasmic ligand-binding sensor domain
[Signal transduction mechanisms]; Region: COG3322"
/db_xref="CDD:225859"
misc_feature 75275..75763
/locus_tag="SMa0137"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:225109"
misc_feature 75290..75757
/locus_tag="SMa0137"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(75398..75400,75524..75526)
/locus_tag="SMa0137"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(75413..75415,75422..75427,75437..75439,75449..75451,
75512..75514,75518..75529)
/locus_tag="SMa0137"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(75500..75502,75584..75586)
/locus_tag="SMa0137"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 75809..76510
/locus_tag="SMa0137"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
gene complement(76655..76975)
/locus_tag="SMa0139"
/db_xref="GeneID:1235298"
CDS complement(76655..76975)
/locus_tag="SMa0139"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435319.1"
/db_xref="GI:16262526"
/db_xref="GeneID:1235298"
/translation="MLTVDFTVAGILNGGPAFKHNEAFSFQIATDDQEETDRYWNAIV
GNGGQESACGWCKDKWGISWQITPRVLAEAMAAGGDEAKRAFEAMMTMKKIDVAAIEA
ARRG"
misc_feature complement(76676..>76975)
/locus_tag="SMa0139"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3865"
/db_xref="CDD:226383"
misc_feature complement(order(76781..76783,76787..76789,76811..76813,
76901..76903,76940..76942,76967..76969))
/locus_tag="SMa0139"
/note="active site"
/db_xref="CDD:211348"
gene complement(77422..78822)
/locus_tag="SMa0142"
/db_xref="GeneID:1235299"
CDS complement(77422..78822)
/locus_tag="SMa0142"
/EC_number="3.4.21.-"
/function="Macromolecule metabolism; Macromolecule
degradation; degradation of proteins, peptides,
glycopeptides"
/note="glimmer prediction; C-terminus with peptidase S8
(Subtilase) domain"
/codon_start=1
/transl_table=11
/product="protease"
/protein_id="NP_435320.1"
/db_xref="GI:16262527"
/db_xref="GeneID:1235299"
/translation="MLTKLKLALIAPIAAIALVSGDILAPGNMIVREVIGTGLALADD
DDDDGGSGGNRGSGGSGRSGSYGAGAGWSGGKSLFPFREFLPRRSIPRRSRAAAPAAP
IRAPDEIVGLGFSPTELGELTATGFEVLERNTMTSFNAEVIKLRIPRRLTLEAARQRA
RAAAPQAVIDFNHYFRPEQHPDAPCVTSDCLARDVIGWPSAQTGLSNCAAGVRIGLVD
TAINPDHLAFEARNIEIVRLVEEELPESGRQHGTAVAALLVGSASSRTPGLIPGGKLI
AVDAFHRGERQDDRSAAFDLARALDLLTRRQVQVINLSLAGPPNLLLEQAVMKAGERG
IIMVAAAGNDGPKAEPVYPAAYEEVIAVTATDRRKRPYRRAGRGEHIDFAAPGVAVWT
AASVSGARPKTGTSFAAPFVTAAVAMMKASEPDLAPEMIHSRLSGHAEDLGDPGKDAV
FGWGLLNARAICKTKS"
misc_feature complement(77461..78189)
/locus_tag="SMa0142"
/note="Peptidase S8 family domain, uncharacterized
subfamily 4; Region: Peptidases_S8_4; cd05561"
/db_xref="CDD:173797"
misc_feature complement(order(77605..77607,77794..77796,77878..77880,
77938..77940,78073..78075,78169..78171))
/locus_tag="SMa0142"
/note="active site"
/db_xref="CDD:173797"
misc_feature complement(order(77605..77607,78073..78075,78169..78171))
/locus_tag="SMa0142"
/note="catalytic triad [active]"
/db_xref="CDD:173797"
gene 78965..79507
/gene="rpoE6"
/locus_tag="SMa0143"
/db_xref="GeneID:1235300"
CDS 78965..79507
/gene="rpoE6"
/locus_tag="SMa0143"
/function="Macromolecule metabolism; Macromolecule
synthesis, modification; RNA synthesis, modification, DNA
transcription"
/note="glimmer prediction; partial homology with RNA
polymerase sigma factor; with Sigma-70 factor (ECF
subfamily) domain"
/codon_start=1
/transl_table=11
/product="RNA polymerase ECF sigma factor"
/protein_id="NP_435321.2"
/db_xref="GI:193782539"
/db_xref="GeneID:1235300"
/translation="MSNAVKDVGERLMAFLPNLRRFAISLCGSRDVADDLVQSACERA
LASAERFEPGTRFDAWIFRILRNLWIDQVRRQKTAGVQDDITERHDIAGSSGERETEA
RLTLKTVAEAITELPDEQREVVLLVCVEELSYREAADVMGIPIGTVMSRLMRARRSLA
EAAGITQATGRSQSMKGANE"
misc_feature 78965..79459
/gene="rpoE6"
/locus_tag="SMa0143"
/note="RNA polymerase sigma factor; Provisional; Region:
PRK12547"
/db_xref="CDD:139056"
misc_feature 79001..79195
/gene="rpoE6"
/locus_tag="SMa0143"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature 79289..79441
/gene="rpoE6"
/locus_tag="SMa0143"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(79313..79315,79343..79345,79361..79366,79394..79396,
79400..79405,79409..79417,79421..79426,79430..79432)
/gene="rpoE6"
/locus_tag="SMa0143"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 79504..80289
/locus_tag="SMa0144"
/db_xref="GeneID:1235301"
CDS 79504..80289
/locus_tag="SMa0144"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435322.1"
/db_xref="GI:16262529"
/db_xref="GeneID:1235301"
/translation="MTRADFSDEILMRFADGELDTGTAAEVERAMETDDALVARVALF
IETRHAAKAAMEPLLDEPVPSELKRAVERMVMEKTSPPSVSGAGILPFPRRAANESHR
SRWLAPVAASLAAVVAGFGGYWLRGSVEAPIEGGLGVAAIGSPALDEALATVAAGEER
RLPGSDQRFRAIATFRDNAQALCREFELDSDDRSTVVSVACRAGSEWRVTFAVIAPGA
TGGYAPASSTETLDAYLTAIDAGAPLEAAEEARALSELQGAQR"
misc_feature 79504..80220
/locus_tag="SMa0144"
/note="Predicted transmembrane transcriptional regulator
(anti-sigma factor) [Transcription]; Region: COG5662"
/db_xref="CDD:227949"
gene complement(80295..80819)
/locus_tag="SMa0146"
/db_xref="GeneID:1235302"
CDS complement(80295..80819)
/locus_tag="SMa0146"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435323.1"
/db_xref="GI:16262530"
/db_xref="GeneID:1235302"
/translation="MSGPRSLVAPSTFPQSQRPVCHSLPGRYDRSDRFELELDERFEE
EFDELFEDELELEFEELLDEELELELLEELELELLEELELELDELLPATMISPSVRPV
WAVCVEVRSTPGNKGAYSLASAAEPTNAARPAAIALFVQFFAISSTPCENRTGSSVRR
SNGRCAPLFHDRNF"
gene complement(80960..81673)
/locus_tag="SMa0148"
/db_xref="GeneID:1235303"
CDS complement(80960..81673)
/locus_tag="SMa0148"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435324.1"
/db_xref="GI:16262531"
/db_xref="GeneID:1235303"
/translation="MLSFLKKDPQVIQFVCHPEDDGVIAPPLPAKSVLPDWFRRLPAV
DKGHLSATNNGLTVKRCMPFLDAMTTGWILPIAATVRLDVKDDGRSVDAGWEFDRVMV
SNHGAHQVAGNPKEPSPPCKFHNYWSIRTPPGWSCLFLPPLNRPGQPFECVAGIVDTD
SYSAHIHFPFFATAPDGLHVVEKGTPLVQVIPFRRADAAVTAEIRAETRAEATEREAI
HRNTLAGEGWYRKSARAAR"
gene 81858..82340
/locus_tag="SMa0149"
/db_xref="GeneID:1235304"
CDS 81858..82340
/locus_tag="SMa0149"
/function="Miscellaneous; Unknown"
/note="activates RNA polymerase to cleave back-tracked RNA
during elongational pausing"
/codon_start=1
/transl_table=11
/product="transcription elongation factor regulatory
protein"
/protein_id="NP_435325.1"
/db_xref="GI:16262532"
/db_xref="GeneID:1235304"
/translation="MSVAFIKEESAETASETLLPDRPISPHPNLVTETGLKALELHLQ
QAREAFDATSTIEDVNERRRQSAGPLRELRYFAERVRTAQLVPDPASFDVVAFGSTVT
FSRDDGRVQKYRIVGEDEADPKAGSISYVSPVARVLMGKSVGDVASVGDQELEILAIS
"
misc_feature 81858..82337
/locus_tag="SMa0149"
/note="transcription elongation factor regulatory protein;
Validated; Region: PRK06342"
/db_xref="CDD:180535"
misc_feature 82134..82337
/locus_tag="SMa0149"
/note="Transcription elongation factor, GreA/GreB, C-term;
Region: GreA_GreB; pfam01272"
/db_xref="CDD:201702"
gene complement(82374..83900)
/locus_tag="SMa0150"
/db_xref="GeneID:1235305"
CDS complement(82374..83900)
/locus_tag="SMa0150"
/EC_number="6.2.1.-"
/function="Small molecule metabolism; Fatty acid
biosynthesis"
/note="catalyzes the formation of malonyl-CoA from
malonate and CoA"
/codon_start=1
/transl_table=11
/product="malonyl-CoA synthase"
/protein_id="NP_435326.1"
/db_xref="GI:16262533"
/db_xref="GeneID:1235305"
/translation="MSNHLFDAIRRAARPDSAFILTADGRVWTYGDMLEHSGRIASVL
DALGVRPGDRVAVQVEKSPEALMLYLACLRTGAVYLPLNTAYTLAELDYFFGDAEPRL
IVCAPGAKEGIAKHAADCGAEVETLDEKGGGSLIDLARGKAPDFPDADRGPDDLAAIL
YTSGTTGRSKGAMLTHDNLLSNATTLREYWRFTADDRLIHALPIFHTHGLFVASNVIL
LAGASMFFLPKFDANEVLRLMPQSTSMMGVPTFYVRLVQNPGLTHEATAGMRLFVSGS
APLLAETHRTFAQMTGHAILERYGMTETNMNTSNPYDGERIAGTVGFPLPGVSLRVAD
PESGRPLPKGETGMIEVKGPNVFKGYWRMPEKTQGEFRADGFFITGDLGRIDERGYVH
IVGRGKDLVISGGYNIYPKEVETEIDQMPGVVETAVIGLPHPDFGEGVTAVVVRKPGA
AIDERAILDGLEGRLARYKQPKRVIFVDDLPRNTMGKVQKNVLRETYARLYAGAEARV
"
misc_feature complement(82395..83900)
/locus_tag="SMa0150"
/note="malonyl-CoA synthase; Validated; Region: PRK07514"
/db_xref="CDD:181011"
misc_feature complement(82431..83855)
/locus_tag="SMa0150"
/note="Malonyl-CoA synthetase (MCS); Region: MCS; cd05941"
/db_xref="CDD:213307"
misc_feature complement(order(83391..83396,83400..83417,83424..83426))
/locus_tag="SMa0150"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213307"
misc_feature complement(order(82485..82487,82593..82595,82680..82682,
82689..82691,82698..82700,82722..82724,82758..82760,
82938..82940,82983..82985,82995..83012,83067..83075,
83139..83141,83151..83153,83157..83159,83277..83285,
83292..83297,83415..83417))
/locus_tag="SMa0150"
/note="active site"
/db_xref="CDD:213307"
misc_feature complement(order(82680..82682,82698..82700,82722..82724,
82758..82760,82938..82940,82995..83012,83067..83075,
83415..83417))
/locus_tag="SMa0150"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213307"
misc_feature complement(order(82485..82487,82593..82595,82683..82691,
82983..82985,82995..83003,83007..83009,83073..83075,
83139..83141,83151..83153,83157..83159,83277..83285,
83292..83297))
/locus_tag="SMa0150"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:213307"
gene complement(83897..86626)
/locus_tag="SMa0151"
/db_xref="GeneID:1235306"
CDS complement(83897..86626)
/locus_tag="SMa0151"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="predicted by codon usage pattern and blastx.
N-terminus of protein is similar to eukaryotic malonyl
CoA decarboxylase, mitochondrial precursor. C-terminus is
similar to various membrane proteins including those for
C4 dicarboxylic acid transport"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435327.2"
/db_xref="GI:193782540"
/db_xref="GeneID:1235306"
/translation="MIVACLFVLLATGMPIAFALGLAAFAALYMQSGAGIFYVLGDTM
FSGIANLAYVSIPMFVLMGAAVASSPAGSDLYTSLDRWLNRIPGGLILSNIGACAIFS
GMTGSSPATCAAIGKMGIPEMMRRGYPASVASGSIAAGGTLGILIPPSVTLIVYGIAT
ETSIGRLFMAGILPGILLTIMFMTWAVIDCKRKGYEFEARLVRYSMKERLAVLPRILP
FLLIIAGTLYVLYGGIATPSEAAGAGAFLTLAVVIVAYRLFRFRPVAGIFGSAMKESV
MIMMIMAAAELFAFALSSLFITQTVAAAIADMEVNRWVLMAVINVFLLICGMFLPPVA
VIVMTSPMLFPIVTQAGFDPYWFAIVLTINMEVGLITPPIGLNLFVINAIAPQIPTKD
ILWGSLPYVLVMFLAIILLCVFPDVATWLPNQMLGDRPMNTTSFFSDMLQSIAERGRR
FLSLGPARNGDVNPVGTMEALCDTLLSSRGEASGMALAKNILDRWQGFDQDKRRDFML
ALLSRFGPDIERLERAIDAYRADPTPKALLEMSMAAEPRRQELIRRLNLAPNGIATLV
RMRADLLELKAQNPDLEAVDTDFAHLFGSWFNRGFLVLRPISWSTPADILEKIIRYEA
VHHIGGWDELRRRLAPEDRRCFAFFHPQLVDDPLIFVEVALTREMPPNIADLLKEDRA
PIRATDATTAVFYSISNCQEGLRGISFGNFLIKQVVEDLRRDLPRLDTFVTLSPVPGF
ADWLSRERQAETSNALSAADRSRLAALDEPDWADQPEIAAAIQPSLTAAAAWYFLRAR
NRNGKTVDPVARFHLGNGARLERINFLGDRSERAMRQAHGLMVNYLYKLDDIETNHEA
FATRGEVVAAPAIRRLIPADRSSRSLVPGPNVFPPGVRSADAPGRKGDKEFTS"
misc_feature complement(85382..86620)
/locus_tag="SMa0151"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:148424"
misc_feature complement(85352..86497)
/locus_tag="SMa0151"
/note="TRAP-type C4-dicarboxylate transport system, large
permease component [Carbohydrate transport and
metabolism]; Region: DctQ; COG1593"
/db_xref="CDD:31781"
misc_feature complement(84089..85099)
/locus_tag="SMa0151"
/note="Malonyl-CoA decarboxylase (MCD); Region: MCD;
pfam05292"
/db_xref="CDD:114040"
gene complement(86647..87216)
/locus_tag="SMa0155"
/db_xref="GeneID:1235307"
CDS complement(86647..87216)
/locus_tag="SMa0155"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435328.1"
/db_xref="GI:16262535"
/db_xref="GeneID:1235307"
/translation="MLKAYSRAVGNASRGLAAVATALLIAAMLVVCQMIMQRYVFRQA
TIWQTDFVVFSATAAMFLGAPYVLLKGGHVGIDVVEMVVGERTRYVLRIIAGLLGLLF
CAVMLIATWIQFHDAWAGNWKHSSVWAPPLWVPLAALPVSFAMLCLQYVAQILTLLTA
PAVPAAMGHGAAEPGSAPGADRHPQEIIQ"
misc_feature complement(86677..87216)
/locus_tag="SMa0155"
/note="TRAP-type C4-dicarboxylate transport system, small
permease component [Carbohydrate transport and
metabolism]; Region: DctM; COG3090"
/db_xref="CDD:225632"
gene complement(87283..88287)
/locus_tag="SMa0157"
/db_xref="GeneID:1235308"
CDS complement(87283..88287)
/locus_tag="SMa0157"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435329.1"
/db_xref="GI:16262536"
/db_xref="GeneID:1235308"
/translation="MSSFRRKLTTSAVAAICSLVASTAGAQTVLKASHQFPGGKGDIR
DEMVQLIAREVAAANVGLEIQVFPGSSLYKPNDQWNAVTRGLLDMTSFPLDYASGRHP
EFSATLMPGLVGNFDRAMRLNDSEFMGDIKKVIENAGALVIADAWLSGAFASKKNCIT
SPDTIKGQVIRAAGPAFEEMLVEAGASISSMPSSEIYTGMQTGVLDAANTSSASFVSY
RLFEQAKCLTAPGENALWFMYEPVLVSKRVFDGLTEEQQKAILAAGEKAEVYFNEEVR
KGDQVMIDTYKKAGVEVVEMSKEDYDAWLELAKASSYKNFAANVPGGDKLIEKALAVK
"
misc_feature complement(87286..88287)
/locus_tag="SMa0157"
/note="TRAP-type C4-dicarboxylate transport system,
periplasmic component [Carbohydrate transport and
metabolism]; Region: DctP; COG1638"
/db_xref="CDD:224553"
misc_feature complement(87331..88104)
/locus_tag="SMa0157"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; cl15441"
/db_xref="CDD:210106"
gene 88416..89090
/locus_tag="SMa0160"
/db_xref="GeneID:1235309"
CDS 88416..89090
/locus_tag="SMa0160"
/function="Miscellaneous; Not classified regulator"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435330.1"
/db_xref="GI:16262537"
/db_xref="GeneID:1235309"
/translation="MSENIFYKLRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPI
REALMQLSAIGLVEIRPRRGAVVVDPAPQRVYEMFEVMAELEGMAGALAARRHTEEDS
AALLAAHEKCREAVLSEETDRYYYENEIFHRAIYTASHSGFLEEQCTTLHRRLRPYRR
LQLRVRNRMKVSFREHGEIVEAILSGNTDGAREGLRSHVAVQGDRFGDLVANLSNRER
RSGRLG"
misc_feature 88416..89069
/locus_tag="SMa0160"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:224715"
misc_feature 88428..88616
/locus_tag="SMa0160"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(88431..88433,88500..88502,88503..88508,88530..88544,
88548..88553,88560..88562,88590..88595,88599..88610)
/locus_tag="SMa0160"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 88644..89015
/locus_tag="SMa0160"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:219539"
gene complement(89275..89520)
/locus_tag="SMa0162"
/db_xref="GeneID:1235310"
CDS complement(89275..89520)
/locus_tag="SMa0162"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435331.2"
/db_xref="GI:193782541"
/db_xref="GeneID:1235310"
/translation="MTISSNRCTALIVTVLPFATLIDREKFDEISTESPFADAGGLTP
MPVHRATTKQKNAKREPLDLVMVPVFLHDTRHNVALS"
gene 89324..90724
/gene="pilQ2"
/locus_tag="SMa0163"
/db_xref="GeneID:1235311"
CDS 89324..90724
/gene="pilQ2"
/locus_tag="SMa0163"
/function="Structural elements; Cell exterior; surface
structures"
/note="similar to hypothetical 44.3 kDa protein Y4XJ in
Rhizobium sp. NGR234"
/codon_start=1
/transl_table=11
/product="PilQ2 pilus assembly protein"
/protein_id="NP_435332.2"
/db_xref="GI:193782542"
/db_xref="GeneID:1235311"
/translation="MTRSRGSLFAFFCFVVALCTGIGVSPPASANGDSVEISSNFSRS
IKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKN
PVGIIDIEVTLDTKLLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIAS
RFAGDEEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSP
RATSNTPAGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGE
FPIPISEQDGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIA
IPGFSVRRARTSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQR
RETDLVIIVTPHLVKPIDPLKKVASPSDRTKRPTEAEFFLGNIDEVEVNGRGRSASRQ
ARVVRAPSSGHFLELQ"
misc_feature 89405..90646
/gene="pilQ2"
/locus_tag="SMa0163"
/note="Flp pilus assembly protein, secretin CpaC
[Intracellular trafficking and secretion]; Region: CpaC;
COG4964"
/db_xref="CDD:227299"
misc_feature 89447..89659
/gene="pilQ2"
/locus_tag="SMa0163"
/note="Pilus formation protein N terminal region; Region:
T2SS-T3SS_pil_N; pfam13629"
/db_xref="CDD:205806"
misc_feature 89696..89851
/gene="pilQ2"
/locus_tag="SMa0163"
/note="BON domain; Region: BON; pfam04972"
/db_xref="CDD:203137"
misc_feature 90059..90544
/gene="pilQ2"
/locus_tag="SMa0163"
/note="Bacterial type II and III secretion system protein;
Region: Secretin; pfam00263"
/db_xref="CDD:215826"
gene 90721..91017
/locus_tag="SMa0164"
/db_xref="GeneID:1235312"
CDS 90721..91017
/locus_tag="SMa0164"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435333.1"
/db_xref="GI:16262540"
/db_xref="GeneID:1235312"
/translation="MIRRSSRPRGFPGLLFASSILLSGCQNHELVRSETIALSAGDAI
AANSVMQMVDPWPPRVKQTSLATPADLEQYKPQQPNAEQNGGNGETYPNDTTTQ"
gene 91039..91569
/locus_tag="SMa0166"
/db_xref="GeneID:1235313"
CDS 91039..91569
/locus_tag="SMa0166"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435334.1"
/db_xref="GI:16262541"
/db_xref="GeneID:1235313"
/translation="MEMTTGASGRSVLGRSGGGRRPTELVMAIVATVILSSCQTSEVL
SGAEFDPTSALASSGDVSKSDLDQGKLQFMNGNYGLAEKHFRKAVELRQDNAEALMGL
AACYDRLGRFDLADRAYNQLLKVAGRQPRIVNNMGYSQYLRGEKAKARKLLLEARAAS
PGDETIEANLALLDRS"
misc_feature 91234..91470
/locus_tag="SMa0166"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(91234..91239,91246..91251,91336..91341,91345..91350,
91357..91362,91438..91443,91450..91455,91462..91467)
/locus_tag="SMa0166"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature 91234..91428
/locus_tag="SMa0166"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:222123"
misc_feature order(91243..91245,91279..91281,91291..91293,91300..91302,
91345..91347,91381..91383,91393..91395,91402..91404,
91447..91449)
/locus_tag="SMa0166"
/note="TPR motif; other site"
/db_xref="CDD:238112"
gene 91653..92465
/locus_tag="SMa0168"
/db_xref="GeneID:1235314"
CDS 91653..92465
/locus_tag="SMa0168"
/function="Macromolecule metabolism; Macromolecule
synthesis, modification; RNA synthesis, modification, DNA
transcription"
/note="glimmer prediction; with ribosomal RNA adenine
dimethylases domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435335.1"
/db_xref="GI:16262542"
/db_xref="GeneID:1235314"
/translation="MAMASDVLARSFGKEAFGLDPQNYHTARPAYPELVWDALRNRAG
LRRGISILEIGAGTGLATERLLEDRPHRLLAVEPDRRLARFLRGRLDKEELEVVETPF
EKLKVPEKSFDLVVSATAFHWIDAAPALRRIHRLLRAGGTVALFWNVFGDGVRPDPFH
RATAHLFSGHRTSPSGGGTTKTPYGLNVGARLGELAEAGFTADEPELIDWTLALDPPA
VRRLYATYSNVTALPADERERLLSGLEKIAETEFAGVVTRNMTTSVYTGRRE"
misc_feature 91761..92426
/locus_tag="SMa0168"
/note="hypothetical protein; Provisional; Region:
PRK08317"
/db_xref="CDD:181382"
misc_feature 91803..92087
/locus_tag="SMa0168"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(91812..91832,91881..91886,91950..91958,92004..92006)
/locus_tag="SMa0168"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 92526..93311
/locus_tag="SMa0169"
/db_xref="GeneID:1235315"
CDS 92526..93311
/locus_tag="SMa0169"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="NP_435336.1"
/db_xref="GI:16262543"
/db_xref="GeneID:1235315"
/translation="MALDRADFYDAELARHNRQLRVAADFGADDRVLDIGCGAGQTTR
EAARAAPQGEAIGVDISAEMLEEARRRSAAEGLRNAMFEQGDAQFHGFPTGSFDLCIS
RFGVMFFADPAAAFANIGRAMRPGARLVWMVWQSRERNEWSRAIRQALAPAIAVSAGA
ANPFSLGDPPVATDLLSAAGFTSIDFADVQEPVFYGSDVDAAFDALTSLYLVQDALAS
TNEPPDKPLQRLRDLLEGHMTPEGVFFDSRAWIITARRAGGGG"
misc_feature 92616..92915
/locus_tag="SMa0169"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(92628..92648,92700..92705,92778..92786,92832..92834)
/locus_tag="SMa0169"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(93492..94256)
/locus_tag="SMa0171"
/db_xref="GeneID:1235316"
CDS complement(93492..94256)
/locus_tag="SMa0171"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435337.1"
/db_xref="GI:16262544"
/db_xref="GeneID:1235316"
/translation="MNATKLLLILPLLAAFAYISLVSLTYLSQRALLYPGASATPAPE
RASWGQNASIQTPDGETLHGLYSRGEPGQPSVLFFLGNADRVSNYGFFAQALAARGIG
LLALSYRGYPGSSGTPNEHGLLIDGIAAFDWLAARSGNEIVVLGQSLGSGVAVDTAGK
RPAVAVILVSAYLSVLSLAQTYYPFFPVALLTKDPFRSDLKIAGVRQPEAVYPRPARH
HHPIVFGRSSVSDRSRAQADAHLRCRPQRSVGCPHG"
misc_feature complement(<93771..94031)
/locus_tag="SMa0171"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_5;
pfam12695"
/db_xref="CDD:205024"
gene 94473..95393
/locus_tag="SMa0172"
/db_xref="GeneID:1235317"
CDS 94473..95393
/locus_tag="SMa0172"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; C-terminal homology with
hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435338.1"
/db_xref="GI:16262545"
/db_xref="GeneID:1235317"
/translation="MSNSKDEVERIDWLEAELADTIDEDYELELSEPTLSEKIREIYR
KAHPPALPRMDYFRALLALQAELIKLQDWVVYHKQKVVVIFEGRDAAGKGGVIKRITQ
RLNPRIVRTVALPAPSDREKTQWYFQRYVPHLPAGGEIVLFDRSWYNRCGVERVMGFA
TEEEVEQFFDDVPEFERMLVRSGVRLVKYWFSITDEEQQLRFLTRIHDPLKQWKLSPM
DLQSRVRWEAYTKAKEETFARTNIREAPWHIVEANDKKRARLNCIDHLLKQIPYEDVP
HEDITLPERIFNPNYERKVLPPELYVPAKY"
misc_feature 94524..95300
/locus_tag="SMa0172"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2326"
/db_xref="CDD:225207"
gene complement(95789..96871)
/locus_tag="SMa0175"
/db_xref="GeneID:1235318"
CDS complement(95789..96871)
/locus_tag="SMa0175"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; partial homology with
hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435339.1"
/db_xref="GI:16262546"
/db_xref="GeneID:1235318"
/translation="MERGDKEQENLSRLEQAAQQTADPKTMQQKATKGPEEKLRFSLR
KKDVWWTVGLAAAALLLFGIQVLINWRLDWLDVPLRLRVMNYVKGGLLIFIMLTVANV
IEVFLIGRIPNRVSRFNLKRIFRLVVVVAIVFVAISVLFVNWYAAFVSLGLISLILGF
ALQMPISSFIAWIYILARAPYRVGDRIRIGDAHGDVIDVSYLDTTLWEFGGEYLWTDH
PSGRIIKFPNSTVFDTPVFNYSWPLFPYVWNEIKFQLAYESDLEFVARTMREVVEEQV
GDIMSQKVKIYKHILSNTPVDELEVKEHPVVHFRVSENTWLEAIVRYLVPPKEAGRTK
TRLIKEMLARMNAEPDRVLFPKSNLR"
misc_feature complement(95900..96604)
/locus_tag="SMa0175"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:223740"
misc_feature complement(95828..96445)
/locus_tag="SMa0175"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene complement(98400..99317)
/locus_tag="SMa0179"
/db_xref="GeneID:1235319"
CDS complement(98400..99317)
/locus_tag="SMa0179"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to glycine cleavage
system transcriptional activator, with bacterial LysR
regulatory helix-turn-helix protein domain"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435340.1"
/db_xref="GI:16262547"
/db_xref="GeneID:1235319"
/translation="MHRPRLPPLSALRAFEAAARLASFKAAAEELLVTPTAISHQIKQ
LEAHMSLRVLDRTPRAVTLTPRGKALYEATAAGFGEIERVVTRLLAETAPTTVTLTST
IAFLSHWLVPRMDALRQTIPNIDLRLHASNKVEELRSGGIETAIRYGRGPFAGTASMQ
LCSDAMTPVCSPSLGLSQLGDLRRVTLIHIDGRSRPAPKPDWNRWCEQAGITDLDTSA
GPRFPDSMLAVQAAIAGQGVVIASRVLVADALATGLLEAPFTQSLAGDAYHFACALGL
EQRTDIAALRMWFQNCFSAAEPDPAHRLP"
misc_feature complement(98448..99317)
/locus_tag="SMa0179"
/note="DNA-binding transcriptional activator GcvA;
Provisional; Region: PRK11139"
/db_xref="CDD:182990"
misc_feature complement(99114..>99230)
/locus_tag="SMa0179"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(98454..99032)
/locus_tag="SMa0179"
/note="The C-terminal substrate domain of LysR-type GcdR,
TrPI, HvR and beta-lactamase regulators, and that of other
closely related homologs; contains the type 2 periplasmic
binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like;
cd08432"
/db_xref="CDD:176123"
misc_feature complement(order(98928..98948,98952..99005,99009..99032))
/locus_tag="SMa0179"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176123"
misc_feature complement(order(98583..98585,98643..98651,99003..99005,
99009..99014))
/locus_tag="SMa0179"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:176123"
gene 99435..100307
/locus_tag="SMa0180"
/db_xref="GeneID:1235320"
CDS 99435..100307
/locus_tag="SMa0180"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="epimerase"
/protein_id="NP_435341.1"
/db_xref="GI:16262548"
/db_xref="GeneID:1235320"
/translation="MVELIAGLIDVFADVPLTGNPLAVVQDADGLTDDQMRRIAGEFN
QAETTFLMRSTRADWKLRSFTASGAEVFGAGHNALGAWLWLAENGDLGSLTAARTFQQ
EIGRDVLPIELESVGGRIHGRMRQVPLRLSDPLDDVAPLADALGLDPRDILPEPPARP
ADTGATHLMVRVLNVDSVDRALPVADKLLAVLEKTPAEGCYIYALDADAPDTAYARFF
NPSVGLWEDAATGTAAGPLAAYLAATGNLTNNELVIEQGTKMGRRSILRIRLAPLPEL
SGAGIVVVKGVIRL"
misc_feature 99435..100304
/locus_tag="SMa0180"
/note="Predicted epimerase, PhzC/PhzF homolog [General
function prediction only]; Region: COG0384"
/db_xref="CDD:223461"
gene complement(100505..100708)
/gene="cspA7"
/locus_tag="SMa0181"
/db_xref="GeneID:1235321"
CDS complement(100505..100708)
/gene="cspA7"
/locus_tag="SMa0181"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; start codon changed based on
similarity to other proteins"
/codon_start=1
/transl_table=11
/product="CspA5 cold shock protein transcriptional
regulator"
/protein_id="NP_435342.1"
/db_xref="GI:16262549"
/db_xref="GeneID:1235321"
/translation="MPKGTVKFFNDDKGFGFITPEDGGTDVFVHVSALQHGGSLKEGD
KVSYDVGQDRKTGKSKAENVSVL"
misc_feature complement(100511..100702)
/gene="cspA7"
/locus_tag="SMa0181"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box...; Region:
CSP_CDS; cd04458"
/db_xref="CDD:239905"
misc_feature complement(order(100544..100546,100625..100627,
100658..100660,100685..100687))
/gene="cspA7"
/locus_tag="SMa0181"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:239905"
misc_feature complement(order(100619..100630,100649..100669))
/gene="cspA7"
/locus_tag="SMa0181"
/note="RNA-binding motif; other site"
/db_xref="CDD:239905"
gene 100964..102508
/locus_tag="SMa0185"
/db_xref="GeneID:1235322"
CDS 100964..102508
/locus_tag="SMa0185"
/function="Structural elements; Cell envelope"
/codon_start=1
/transl_table=11
/product="transmembrane-transport protein"
/protein_id="NP_435343.1"
/db_xref="GI:16262550"
/db_xref="GeneID:1235322"
/translation="MADNIHTPEQASRREWVGLCVLSIACLIYSMDLSVLFLAVPAIV
ADLDPSASQLLWINDIYGFMVAGFLVTMGTLGDRIGRRRVLLMGAFAFGVASAFAAFS
NTPGQLILARALLGIAGATIAPSTLSLIVNLFKNEAERNRAISIWGTAFALGGLVGPL
IGGILLQYFHWGSVFLINIPVMLLLLAVAPFLLPEYKNNDAGRLDLLSVVLSLATVLP
IIYGFKHMAADGFQLAQIVYIGLGLLVGLLFVRRQRRLSDPLVDLALFRVPAFTASLM
VNLAGVFFVFGVFLFQNLFLQLVLGLSPLEAALWSAPSALVFAVMSFQAYRFTNRFGP
VRTVLGGLLVNAAGAAAMAIAAYAESLIGILGSSMIIGFGFVPVVLTTTGLIVGTAPP
ERAGSASAISETSAEFGGALGIAVLGSLATLIYRMAMNRADLSSLNPVQAEAVSATLA
GAVETARSMPGSTSAVWLETAKSGFSLGFAICCVVATVTLLLLAIVARRVYATAHIDE
STLAPH"
misc_feature 101024..>101500
/locus_tag="SMa0185"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(101060..101062,101069..101077,101081..101086,
101135..101137,101144..101149,101156..101158,
101168..101173,101177..101182,101318..101323,
101330..101335,101342..101347,101354..101356,
101393..101398,101405..101410,101426..101428)
/locus_tag="SMa0185"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 102649..103602
/locus_tag="SMa0187"
/db_xref="GeneID:1235323"
CDS 102649..103602
/locus_tag="SMa0187"
/note="glimmer prediction; has short chain domain; SDR
superfamily member"
/codon_start=1
/transl_table=11
/product="short chain dehydrogenase"
/protein_id="NP_435344.2"
/db_xref="GI:193782543"
/db_xref="GeneID:1235323"
/translation="MKSETGQKQRDIQKQVEGADKKEKPKTSGAMQAGARRYPEPPFP
KVHQDKPGSEADLPVAPMYDAPFYKGSDKLKDKVALITGGDSGIGRSVAVLFAREGAD
VAIVHLDESQDADDTKAAVEKEGRKCLVIKGDVKDASFCRKAVEKTVMQLGRLDILIN
NAAFQVHTRDIEDLTDEHFDETLKTNLYGYFYMAKAAIPHLKNGSAIINTGSVTGLTG
SKELLDYSMTKGGIHAFTRALSGHLVPKGIRVNAVAPGPVWTPLNPSDKEAEDVEKFG
SQTPMKRAAQPEEIAPAYVFLASPQMSSYITGEILPIVGGY"
misc_feature 102742..103599
/locus_tag="SMa0187"
/note="short chain dehydrogenase; Provisional; Region:
PRK06701"
/db_xref="CDD:235853"
misc_feature 102799..103596
/locus_tag="SMa0187"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature order(102895..102897,102901..102906,102910..102912,
102967..102975,103129..103137,103276..103284,
103321..103323,103333..103335,103411..103422)
/locus_tag="SMa0187"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(103204..103206,103282..103284,103321..103323,
103333..103335)
/locus_tag="SMa0187"
/note="active site"
/db_xref="CDD:187535"
gene 104028..104471
/locus_tag="SMa0189"
/db_xref="GeneID:1235324"
CDS 104028..104471
/locus_tag="SMa0189"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435345.1"
/db_xref="GI:16262552"
/db_xref="GeneID:1235324"
/translation="MRTDLVNRPQDGSAGRSALLVASAVNAVAAIYHIIGGTPEVMYP
VYSANLPPSSAGVLDILWYQMAALIVGSAVATLVAAFRSDWRWPVAWIIGGHFLVVSG
ICLFFTFVWFGNPWGLIQWAIFGPVGLIIFWAAARPAERAGAPTL"
gene 104560..105189
/locus_tag="SMa0190"
/db_xref="GeneID:1235325"
CDS 104560..105189
/locus_tag="SMa0190"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; with bacterial regulatory
proteins, tetR domain"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_435346.1"
/db_xref="GI:16262553"
/db_xref="GeneID:1235325"
/translation="MADKQGGPTKADWVAAGLSALTAGGIEAVRVERLAVILGVSKGP
FYWRFKNRGELLEAIIEFWKRDFTADLIEQTSHFDTPRERLEALAELAVVSTSGALDV
AKTECALRAWAAQDPLPRAAVREVDAMRTKHLTEEFKLLGAPHPLAEQLAKAIYLALL
GLYTVRQYTPELADEQSYLTAVRIALDAAQIQSHSTEASAAKSRLEPDI"
misc_feature 104560..105087
/locus_tag="SMa0190"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:224228"
misc_feature 104599..104736
/locus_tag="SMa0190"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(105799..106329)
/locus_tag="SMa0191"
/db_xref="GeneID:1235326"
CDS complement(105799..106329)
/locus_tag="SMa0191"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435347.1"
/db_xref="GI:16262554"
/db_xref="GeneID:1235326"
/translation="MTADKISPDMLRFERILAAPAATVWQYLVDPELRARWFMSGPTD
LQVGGAFGLTMDHDRLSDEVVPTPDRYKPYVGHRWHERITRYEPPHLLAFTWEDGKAG
EVTFALTEIDSGTTRLVLTHTGLRGSEDALNFGGGWHAHLAVLEKRIAGISIPDFWAL
HAVAEREMEIALVSEA"
misc_feature complement(105823..106299)
/locus_tag="SMa0191"
/note="Putative hydrophobic ligand-binding SRPBCC domain
of an uncharacterized subgroup of CalC- and Aha1-like
proteins; Region: SRPBCC_CalC_Aha1-like_6; cd08899"
/db_xref="CDD:176908"
misc_feature complement(order(105895..105897,105904..105912,
105916..105942,105955..105957,105961..105963,
105967..105969,105973..105975,106006..106008,
106012..106014,106018..106023,106045..106050,
106054..106056,106072..106074,106081..106083,
106087..106092,106096..106098,106165..106167,
106171..106173,106177..106179,106183..106185,
106207..106209,106228..106230,106243..106248,
106252..106260,106285..106287,106291..106293,
106297..106299))
/locus_tag="SMa0191"
/note="putative hydrophobic ligand binding site [chemical
binding]; other site"
/db_xref="CDD:176908"
gene complement(106326..106652)
/locus_tag="SMa0193"
/db_xref="GeneID:1235327"
CDS complement(106326..106652)
/locus_tag="SMa0193"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435348.2"
/db_xref="GI:193782544"
/db_xref="GeneID:1235327"
/translation="MVDEKLTLTFAALADPTRRGMLAALTSGEKPISELARPYQMTLA
GAAKHVAILARAGLIERRKVGRQNICRLNAGNLKEANDWLAQWQRFWNVRLDALEKAL
KEELSQ"
misc_feature complement(106428..106625)
/locus_tag="SMa0193"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature complement(order(106482..106484,106572..106574,
106581..106586,106593..106598,106605..106607,
106614..106616,106620..106625))
/locus_tag="SMa0193"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238042"
misc_feature complement(order(106443..106451,106464..106472,
106488..106493,106497..106502,106509..106514,
106518..106529,106554..106562,106599..106607,
106617..106622))
/locus_tag="SMa0193"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature complement(order(106551..106553,106560..106562))
/locus_tag="SMa0193"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
gene complement(106949..107863)
/locus_tag="SMa0196"
/db_xref="GeneID:1235328"
CDS complement(106949..107863)
/locus_tag="SMa0196"
/EC_number="3.1.1.17"
/function="Macromolecule metabolism; Macromolecule
degradation; degradation of polysaccharides"
/codon_start=1
/transl_table=11
/product="gluconolactonase"
/protein_id="NP_435349.1"
/db_xref="GI:16262556"
/db_xref="GeneID:1235328"
/translation="MAEASIYEIHDPRFRQMIVTSAGLDELYSGCRWAEGPVWFNDAN
QLLWSDIPNQRILRWTPEGGVSVYRQPSNFTNGHTRDRRGRLISCEHGTRRVTRTEVD
GSITVLADRFEGRRLNSPNDVVVKSDGTIWFTDPTYGIMSDYEGYHADPEQPTRNVYR
LDPETGELSAVVTDFTQPNGLAFSPDEKILYVADSSASHDDRLPRHIRAFDLTDGGRL
ANGRVFCVIDKGIPDGIRTDANGNLWSSAGDGVHCFDTAGKLIGKIRVPQTVANLTFG
GPRRNRLFIAATRSLYSVYVAVTGSQVP"
misc_feature complement(106952..107842)
/locus_tag="SMa0196"
/note="Gluconolactonase [Carbohydrate transport and
metabolism]; Region: COG3386"
/db_xref="CDD:225921"
misc_feature complement(107276..107503)
/locus_tag="SMa0196"
/note="Strictosidine synthase; Region: Str_synth;
pfam03088"
/db_xref="CDD:111929"
gene complement(107878..108825)
/locus_tag="SMa0197"
/db_xref="GeneID:1235329"
CDS complement(107878..108825)
/locus_tag="SMa0197"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; partially similar to ABC
transporter integral membrane protein and E. coli ribose
transport protein rbsC"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435350.2"
/db_xref="GI:193782545"
/db_xref="GeneID:1235329"
/translation="MNALIRQFGKPWVWSWLAAFIVWFLTIMVTGGAGTLGLSQAALT
FAAFSVIVGIGQMFVITLGPGNIDLSVPATMTLAGTVALKLMNVENGMVLPGLLLAVF
IGLGVGLCNYTLIKALRIPPIIATLSMSFVVQSGAIWTNRGLRIKPPSVLAEFTTTNT
LGVPNVAIVAVLISVLAWILLEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFC
AVLASISGYLLACFSGGAALNMGAEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFM
FLVVSMLNTYGLGAGIRLIMTGLIIISVIMLAGGRRGMR"
misc_feature complement(108082..108699)
/locus_tag="SMa0197"
/note="Branched-chain amino acid transport system /
permease component; Region: BPD_transp_2; pfam02653"
/db_xref="CDD:217165"
misc_feature complement(107905..108690)
/locus_tag="SMa0197"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(108178..108234)
/locus_tag="SMa0197"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(108822..109769)
/locus_tag="SMa0198"
/db_xref="GeneID:1235330"
CDS complement(108822..109769)
/locus_tag="SMa0198"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; partially similar to ribose ABC
transporter permease"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435351.1"
/db_xref="GI:16262558"
/db_xref="GeneID:1235330"
/translation="MTFRLSSDAIRLVIPALSLSLLLAAVFWLQPRAMSYIGLNLLFN
LAVPIALATIAQMLVMAVNDLDLSMGAFVSFVACVTATFLRDAPAIGILILAGAVAAY
AAIGVVIHLRNLPSIVVTLGMSFVWGGLAVLLLPAPGGQAPDWVRWLMTVKPPLAPMA
IVASIIIAVIAHFIVKRSSLGVLIRGVGGNQRSVERAGWSIVAARATAYALAGLFAVL
AGIALVGLTTSADANIALRYTLLSIAGVILGGGEFTGGRVSPIGAVIGALTLTLASSF
LSFLRISPDWQIGAQGAILIIVLALRLMLNRLERREKRR"
misc_feature complement(108876..109658)
/locus_tag="SMa0198"
/note="Branched-chain amino acid transport system /
permease component; Region: BPD_transp_2; pfam02653"
/db_xref="CDD:217165"
misc_feature complement(108876..109634)
/locus_tag="SMa0198"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(109140..109196)
/locus_tag="SMa0198"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(109766..111229)
/locus_tag="SMa0199"
/db_xref="GeneID:1235331"
CDS complement(109766..111229)
/locus_tag="SMa0199"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435352.1"
/db_xref="GI:16262559"
/db_xref="GeneID:1235331"
/translation="MMASSMDDVAKAIIAVDGAKVSFGAVKALDGVTLRVMPGECVGL
VGHNGAGKSTIVSVINGGLTPHHGIVTSDGERQERYGINAARDRGVRCVFQELSLCPN
LSIVENTRLVHRTLGGFGWRLRAAKIIEKSLDAVFPGHGIDSGRTVGDLSIAERQMVE
IALAFSDAGTPARLVILDEPTSSLDASLARQMLDHVRRFIAAGGSVIFISHILHEILE
TADRIVVMKDGRVVAERPAHRFDHHGLVEAMGSVAKAETRQRPVCDQPAAPVILSHEA
AGIPFTARTGEIIGLAGLAGHGQTELLLALHAARSGNWLPQGNPLVTFVAGDRRLNGV
FELWSILRNFSIASLGDMSRRGLVLEAGEKTRGTAWKERIEIRTPDLNNRILSLSGGN
QQKVLFARALATRAPIVLMDDPMRGVDVGTKQEVYAIIREEAAAGRTFIWYSTEMDEV
CLCDRVYVFREGRITAELGGDAVDEANIISASFEGTA"
misc_feature complement(109775..111214)
/locus_tag="SMa0199"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:224053"
misc_feature complement(110528..111190)
/locus_tag="SMa0199"
/note="First domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:213183"
misc_feature complement(111071..111094)
/locus_tag="SMa0199"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213183"
misc_feature complement(order(110597..110599,110693..110698,
110945..110947,111068..111076,111080..111085))
/locus_tag="SMa0199"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213183"
misc_feature complement(110945..110956)
/locus_tag="SMa0199"
/note="Q-loop/lid; other site"
/db_xref="CDD:213183"
misc_feature complement(order(110750..110770,110915..110923))
/locus_tag="SMa0199"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213183"
misc_feature complement(110693..110710)
/locus_tag="SMa0199"
/note="Walker B; other site"
/db_xref="CDD:213183"
misc_feature complement(110675..110686)
/locus_tag="SMa0199"
/note="D-loop; other site"
/db_xref="CDD:213183"
misc_feature complement(110591..110611)
/locus_tag="SMa0199"
/note="H-loop/switch region; other site"
/db_xref="CDD:213183"
misc_feature complement(109838..110398)
/locus_tag="SMa0199"
/note="Second domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:213182"
gene complement(111288..112304)
/locus_tag="SMa0203"
/db_xref="GeneID:1235332"
CDS complement(111288..112304)
/locus_tag="SMa0203"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; partial homology to ABC
transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435353.2"
/db_xref="GI:193782546"
/db_xref="GeneID:1235332"
/translation="MTIRKMLLASAAITCAAMPASAFADTSAKKIALSNNYAGNSWRQ
AMLTSWEKVTGEAVKAGIVASADAFTTAENQATEQAAQIQNMILQGYDAIVLNAASPT
ALNGAVKEACDAGITVVSFDGIVTEPCAWRIAVDFKEMGRSQVEYLSNKLPDGGNLLE
IRGLAGVFVDDEISAGIHEGVKQFPQFKIAGSVHGDWAQDVAQKAVAGILPSLPDIVG
VVTQGGDGYGAAQAIAATDRKMPIIVMGNREDELKWWKEQKDANGYETMSVSIAPGVS
TLAFWVAQQILDGKEVKKDLVVPFLRIDQDNLEANLANTQAGGVANVEYTQEDAIKVI
ESAK"
misc_feature complement(111351..112304)
/locus_tag="SMa0203"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:224791"
misc_feature complement(111396..112217)
/locus_tag="SMa0203"
/note="Periplasmic sugar-binding component of
uncharacterized ABC-type transport systems that are
members of the pentose/hexose sugar-binding protein family
of the type I periplasmic binding protein superfamily;
Region: PBP1_ABC_sugar_binding_like_1; cd06300"
/db_xref="CDD:107295"
misc_feature complement(order(111495..111497,111564..111566,
111786..111788,111939..111941,112179..112181))
/locus_tag="SMa0203"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107295"
gene 112578..113825
/locus_tag="SMa0204"
/db_xref="GeneID:1235333"
CDS 112578..113825
/locus_tag="SMa0204"
/function="Miscellaneous; Not classified regulator"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="NP_435354.1"
/db_xref="GI:16262561"
/db_xref="GeneID:1235333"
/translation="MLHSAPAAMFDHYLGISRLLAGQLDFRSAIRSVAAEVAHIIPHD
HLDVCVLLEDGNYHTAYETGIETAWGDLAGAPVVNSPIRSLLWGEVDFLLADDAMTDP
RFHFDGAFKRPIVEQSLRSRLHVPMKVQGAIIAALSCSSQEAGAYTMEDVERARIIAD
LLTPYFFALRAAEQAQRSAIVEAEARAREEGLRLGALKLTEALEQERQRIGMDLHDQT
LADLTRLARRIDRLSRNGEVAPEALEPVSRSLQHCMQDLRQIIEQAKPSVLQLFGLTQ
AIEHHLDRSTRDTGSIIEWGLADETNGALERLEPTVIVALFRIAQEAINNAVRHAAPL
AVKVRLDADDDRLSIEISDDGTGLAKTRGRIGEGIDNMKTRARLISARFTIGPGHNNR
GTVVRVVLPLAPHDSGSIEERAE"
misc_feature 112803..113783
/locus_tag="SMa0204"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4585"
/db_xref="CDD:226951"
misc_feature 113193..113360
/locus_tag="SMa0204"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:219540"
misc_feature 113523..113777
/locus_tag="SMa0204"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(113541..113543,113553..113555,113562..113564,
113628..113630,113634..113636,113640..113642,
113646..113651,113673..113684,113730..113732,
113736..113738,113754..113759,113763..113765)
/locus_tag="SMa0204"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 113553..113555
/locus_tag="SMa0204"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(113640..113642,113646..113648,113673..113675,
113679..113681)
/locus_tag="SMa0204"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 113822..114544
/locus_tag="SMa0206"
/db_xref="GeneID:1235334"
CDS 113822..114544
/locus_tag="SMa0206"
/function="Miscellaneous; Not classified regulator"
/codon_start=1
/transl_table=11
/product="Response regulator"
/protein_id="NP_435355.1"
/db_xref="GI:16262562"
/db_xref="GeneID:1235334"
/translation="MKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTVGEKLAR
EHKSAHIVMDLQMASRNGIEAARTIWKERPETRILFWSNYSDEAYVRGVSRIVPDGAA
YGYVLKSASDERLKLALRSIFIESQCVIDREVRGLQQKSLGQTNGFNDSEYEILVDIA
LGLTDRAIARRRGLSLRSVQNRLQQLYDKLDVYQAASDDNDDGRFNLRARAITIAFLR
KLLNYSALERAEAELQEWLDGK"
misc_feature 113822..114490
/locus_tag="SMa0206"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:225107"
misc_feature 113831..114190
/locus_tag="SMa0206"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(113840..113845,113981..113983,114005..114007,
114065..114067,114134..114136,114143..114148)
/locus_tag="SMa0206"
/note="active site"
/db_xref="CDD:238088"
misc_feature 113981..113983
/locus_tag="SMa0206"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(113990..113995,113999..114007)
/locus_tag="SMa0206"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 114143..114151
/locus_tag="SMa0206"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 114275..114397
/locus_tag="SMa0206"
/note="helix_turn_helix, Lux Regulon; Region: HTH_LUXR;
smart00421"
/db_xref="CDD:197715"
misc_feature order(114311..114319,114341..114346,114350..114355,
114359..114373)
/locus_tag="SMa0206"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
gene 114669..115757
/locus_tag="SMa0209"
/db_xref="GeneID:1235335"
CDS 114669..115757
/locus_tag="SMa0209"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435356.1"
/db_xref="GI:16262563"
/db_xref="GeneID:1235335"
/translation="MLKSIDLMYQAMLAELRQRSLDAAWSADFPSDGRFTPLTVKQRR
YWYFDRPDGKGGRTRDYVGPASDPEIAKRVEEFKAQKDDLQARRRMVSTLTREGGMVA
PDRMSGDVIEALASGGLFRLRGILIGTIAFHTYAGVLSVRLPGHSIMTGDADVAQDFA
VSREVGDSMPPILQLLQSVDPTFRPVPHRSGQAAFSSFQNKNSYKVEFLTNRSSDDYM
DQPARMPALGGASADPLRFLDFLIRDPVRTVVLHKSGIPVTVPDPSRYAVHNLIVASR
RHNDGQSAVKRDKDIRQAGILFEAILQTRRSSDLALVYNEAWQRGDAWRAGIRAGAAM
LPDEGRKHLKACLRTGAVEIDEDVSLPF"
misc_feature 114669..115712
/locus_tag="SMa0209"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5397"
/db_xref="CDD:227684"
gene complement(115852..116118)
/locus_tag="SMa0210"
/db_xref="GeneID:1235336"
CDS complement(115852..116118)
/locus_tag="SMa0210"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435357.2"
/db_xref="GI:193782547"
/db_xref="GeneID:1235336"
/translation="MDVQKAGMARLLLAAPDVRDSAWMIHDLTFLKLCEVYEHACLRR
DVLRCAASIDDAALLKSEEECKSLEAAAIAYIRERQKFSGLGSH"
gene complement(116261..116455)
/locus_tag="SMa0211"
/db_xref="GeneID:1235337"
CDS complement(116261..116455)
/locus_tag="SMa0211"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435358.1"
/db_xref="GI:16262565"
/db_xref="GeneID:1235337"
/translation="MLGDWDMDDRDTNHNGEKNSASDLLEIAAQLAALAEDIKTLAAM
PIEQISTLIEPGDRPEASSE"
gene complement(116673..117515)
/gene="kduI"
/locus_tag="SMa0214"
/db_xref="GeneID:1235338"
CDS complement(116673..117515)
/gene="kduI"
/locus_tag="SMa0214"
/note="4-deoxy-L-threo-5-hexosulose-uronate
ketol-isomerase; catalyzes the interconversion of
4-deoxy-L-threo-5-hexosulose uronate to
3-deoxy-D-glycero-2,5-hexodiulosonate"
/codon_start=1
/transl_table=11
/product="5-keto-4-deoxyuronate isomerase"
/protein_id="NP_435359.2"
/db_xref="GI:193782548"
/db_xref="GeneID:1235338"
/translation="MTISVSVRQVVGPEDAARRNTQGLRDGFVIEALFQPGRANLTYS
HLDRMIVGGVVPAADRLVIDRVAETGTQRFLDRREAAIINIGGSGTVSVGDKDHVLGF
QEALYVGMGGGALGFASDDANAPALFYVLSAPAHRSCPTVHITRDMAKKLSLGSAEES
NARTINQYVHPDVCESCQLLVGLTMFEPGSVWNTMPAHVHDRRMEVYLYFGMQEATRI
FHFMGEPGETRHVVLKNHEAVLSPGWSIHSGAGTGRYAFIWAMAGDNMSFTDMDKVPM
EALR"
misc_feature complement(116676..117503)
/gene="kduI"
/locus_tag="SMa0214"
/note="5-keto 4-deoxyuronate isomerase [Carbohydrate
transport and metabolism]; Region: KduI; COG3717"
/db_xref="CDD:226240"
gene complement(117547..118287)
/locus_tag="SMa0216"
/db_xref="GeneID:1235339"
CDS complement(117547..118287)
/locus_tag="SMa0216"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; similar to ABC sugar transport
ATP binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435360.1"
/db_xref="GI:16262567"
/db_xref="GeneID:1235339"
/translation="MMSTPNLLELHNISKSFGALTALRNLSFHIGEGEVVGLLGDNGA
GKSTTVNLISGIHKPTDGYLSVDGKKTTFSCRSDSADAGIETIYQHTALVDSLSITRN
IFMGRELTDRFGFLRQREMRDIAMEVLQNAVHISGIDSPDTLVGNLSGGQKQAVAIAR
AVYFKKRVLLLDEPTSALSVRETEALLNQVLKLKAENVSSVLVTHNLYHAYQVCDRFV
IMSHGTKVFDVQKADTTISQLTEYVVLT"
misc_feature complement(117604..118278)
/locus_tag="SMa0216"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:223488"
misc_feature complement(117610..118266)
/locus_tag="SMa0216"
/note="First domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:213183"
misc_feature complement(118147..118170)
/locus_tag="SMa0216"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213183"
misc_feature complement(order(117673..117675,117769..117774,
118021..118023,118144..118152,118156..118161))
/locus_tag="SMa0216"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213183"
misc_feature complement(118021..118032)
/locus_tag="SMa0216"
/note="Q-loop/lid; other site"
/db_xref="CDD:213183"
misc_feature complement(order(117817..117822,117931..117939,
117985..117999))
/locus_tag="SMa0216"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213183"
misc_feature complement(117769..117786)
/locus_tag="SMa0216"
/note="Walker B; other site"
/db_xref="CDD:213183"
misc_feature complement(117751..117762)
/locus_tag="SMa0216"
/note="D-loop; other site"
/db_xref="CDD:213183"
misc_feature complement(117667..117687)
/locus_tag="SMa0216"
/note="H-loop/switch region; other site"
/db_xref="CDD:213183"
gene complement(118284..119363)
/locus_tag="SMa0217"
/db_xref="GeneID:1235340"
CDS complement(118284..119363)
/locus_tag="SMa0217"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; start codon changed based on
homology and codon usage."
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435361.2"
/db_xref="GI:193782549"
/db_xref="GeneID:1235340"
/translation="MGARRRARPVPRSPTIECQTVTPVLAESAAPRSRTQRQSILKQI
MGMPAGAIFLVFMTLQIVCIAGALLYPDEFRYLSPQNLTILMKAIPVLGCLALGAGVL
MIAGEFDLSIGSVYTFTAVLMASLVNAGLSAFIAAPIAILTGLLIGSLNGHITLRFGL
PSFIVTLGGLLFWRGAVLLYNGAVQVRFDPEPVFTSLFSGTLFGVNAAFIWIVLFVTG
FHLLLHRHRFGNHVFATGGNRGAAEAIGINTSRVKLIAFAIAGGMAAVAGILATARVG
SVQPGQGAGLELQAIAACVIGGLSLRGGRGSIIGIFLGVLLIHTITDVLLLLRAPGFY
LDMFIATLIVLAAIFNHLIERRGLA"
misc_feature complement(118314..119057)
/locus_tag="SMa0217"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(118479..119057)
/locus_tag="SMa0217"
/note="Branched-chain amino acid transport system /
permease component; Region: BPD_transp_2; pfam02653"
/db_xref="CDD:217165"
misc_feature complement(118590..118646)
/locus_tag="SMa0217"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(119373..120323)
/locus_tag="SMa0218"
/db_xref="GeneID:1235341"
CDS complement(119373..120323)
/locus_tag="SMa0218"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; start codon changed based on
homology and codon usage pattern"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435362.2"
/db_xref="GI:193782550"
/db_xref="GeneID:1235341"
/translation="MKLTRLRTAALAAGLATLLTSTALAADVKATMIIYLDPSVQFFN
PVVKGAQDAAAQFGVDLDVQYANNDPVRQNDLIESATASGVDGIAVAISSSDAFDESI
CAAVKAGIIVIGFNNDDLDGAKGNCRQAYVGMDELASGYELGNRMIKEFGLKSGDVVF
NPREIPEASFAVARGGGIEKAMTENGIKVETVRAGLDPAEAQNIIAQFLIANPNVKAL
FGTGSVTSTVGAGAIKDAGVDIPFGGFDLAVEIVNAVESGAMYATMDQQPYLQGYYPI
AQIALAKKYGLTPTDIDTGQGAFLDKTRIGSVKPLIGSYR"
misc_feature complement(119433..120230)
/locus_tag="SMa0218"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:245225"
misc_feature complement(119484..120203)
/locus_tag="SMa0218"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:222108"
gene complement(120444..121958)
/locus_tag="SMa0220"
/db_xref="GeneID:1235342"
CDS complement(120444..121958)
/locus_tag="SMa0220"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/codon_start=1
/transl_table=11
/product="NAD-dependent aldehyde dehydrogenase"
/protein_id="NP_435363.1"
/db_xref="GI:16262570"
/db_xref="GeneID:1235342"
/translation="MLSNFIAPDSNDPRLRIKSRYQMLVDGKSVDAASGSTIDRVSPG
HAGEVVGTWPEASADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEE
LALIESLEVGKPIAQARGEIGFCADLWSYAAGQARALEGQTHNNIGDDRLGLVLREPV
GVVGIITPWNFPFIIASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREAGIPDGV
FNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGEIAARTVKRVGLELGGKGPQI
VFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDALMERLLDISRKVAFGDP
LNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTP
DMSIAREEIFGPVLSTLTFKTADEAVALANATEFGLSASVWSTNLETALQTIRRIRAG
RCWINSVIDGTPELPIGGYKKSGLGRELGRYGFDEYSQFKGVHVTLGRPAPWFT"
misc_feature complement(120483..121865)
/locus_tag="SMa0220"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:215767"
misc_feature complement(120477..121841)
/locus_tag="SMa0220"
/note="Gluconobacter oxydans L-sorbosone
dehydrogenase-like; Region: ALDH_SNDH; cd07118"
/db_xref="CDD:143436"
misc_feature complement(order(120561..120563,120675..120677,
120753..120755,120759..120761,121053..121055,
121149..121157,121197..121202,121209..121211,
121218..121229,121371..121376,121380..121382,
121425..121427,121449..121463))
/locus_tag="SMa0220"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143436"
misc_feature complement(order(121053..121055,121062..121064,
121155..121157,121449..121451))
/locus_tag="SMa0220"
/note="catalytic residues [active]"
/db_xref="CDD:143436"
gene 122050..122778
/locus_tag="SMa0222"
/db_xref="GeneID:1235343"
CDS 122050..122778
/locus_tag="SMa0222"
/function="Miscellaneous; Not classified regulator"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435364.1"
/db_xref="GI:16262571"
/db_xref="GeneID:1235343"
/translation="MVVQIGCQRMTAAKDMNLESLKIDTGETAAAQVERDLRESIIRL
ELAPGMRLSEQEIATRMGVSRQPVREALIALGKSKLVDIRPNRGTVVVRISARQMMEA
RFVREAIEVAVARRASETFDSWTRRKIDTILARQKAANEAHDHNAFRREDEQFHIAIA
EGAGCGLAWNAVSDIKAHMDRVCNLQLRHPDSMKKLIAEHEAIITAIDARDADAAAAA
MRSHLNGILADLPQIEADNPDLFE"
misc_feature 122086..122775
/locus_tag="SMa0222"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:224715"
misc_feature 122131..122322
/locus_tag="SMa0222"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(122131..122133,122137..122139,122209..122214,
122236..122250,122254..122259,122266..122268,
122296..122301,122305..122316)
/locus_tag="SMa0222"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 122425..122724
/locus_tag="SMa0222"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:219539"
gene complement(122852..123637)
/locus_tag="SMa0223"
/db_xref="GeneID:1235344"
CDS complement(122852..123637)
/locus_tag="SMa0223"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with tetR domain"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="NP_435365.2"
/db_xref="GI:193782551"
/db_xref="GeneID:1235344"
/translation="MRCDRRCGGVKYRSWAQILCERHAKACRFGRRREAGGWLRLKAS
SYILQVSYFWYIVMSSRPNKTQPPAKRVRLSREQRRRQLLDLAWHLVREEGSDALTLP
RLSQEAAVAKPVVYDHFGTRNGLLIALYRDFDARQTEMIDAALAGSGPTLEDRARVIA
TSYVDCVLAQGREMPGVLAALAGSPELEAVKRDYQLAFIEKCRRALAAFVGRRGIEPA
GFWAMLGAANALSDAASTGEITAEQAQDELFETIVAMIERSHP"
misc_feature complement(122864..123379)
/locus_tag="SMa0223"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:224228"
misc_feature complement(123251..123379)
/locus_tag="SMa0223"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 123589..125061
/locus_tag="SMa0224"
/db_xref="GeneID:1235345"
CDS 123589..125061
/locus_tag="SMa0224"
/function="Structural elements; Cell envelope"
/codon_start=1
/transl_table=11
/product="Permease, MFS"
/protein_id="NP_435366.2"
/db_xref="GI:193782552"
/db_xref="GeneID:1235345"
/translation="MPMTDTSLPRTVDRTAWLGLIAILPLVLLVAMDGSILYLAMPHV
TSALMPTADQALWILDIYGFVVGSLLIAFGNIGDRYGRLKLIITGAAVFGAGSLGAAY
SQTPEQLIASRALMGLGGATLLPSGLAIVSALFPDPRLRAQAIGIFAATFAAGFAIGP
LIGGMLLRQFAWGAVFLINVPVVIGFMIGAPILLREVRSTVGGSIDLASLVLSFAGIL
LFTYSLKNAAAYGFTPTQIVAGAAGIFALALFARRQTKLEYPLLDLGLFRDRIFSIAI
LTGLLSLVVWSAAGYLSGVYLQSVLGIDVFAAALLTLPGAIVLTATCVATARIVERIG
RKTALVATHLLIGAGVFLLLFTTTETGIAVFIASTMIAGIGYGLSFSLVADIAVSAVP
ANRAGAAGSIAETSNELGNALGISLLGSLATLSFRLFGPGVAGTLDETLDQPGLAHQS
LIQAQEAFLTGMHVAIGTGGLLTLAVGMVAWLWLPSKLPE"
misc_feature 123682..125049
/locus_tag="SMa0224"
/note="methyl viologen resistance protein SmvA;
Provisional; Region: PRK14995"
/db_xref="CDD:184957"
misc_feature 123682..>124173
/locus_tag="SMa0224"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(123688..123690,123697..123705,123709..123714,
123763..123765,123772..123777,123784..123786,
123796..123801,123805..123810,123946..123951,
123958..123963,123970..123975,123982..123984,
124021..124026,124033..124038,124054..124056)
/locus_tag="SMa0224"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature <124378..124857
/locus_tag="SMa0224"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 125261..126253
/locus_tag="SMa0226"
/db_xref="GeneID:1235346"
CDS 125261..126253
/locus_tag="SMa0226"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435367.2"
/db_xref="GI:193782553"
/db_xref="GeneID:1235346"
/translation="MSVSFPRAGFLALVMVVALAFGVPFDAARGELLARVPAAREMAV
CGDTLFVGTKGSSVYAVSLPGGRARRVASGFSNANGVACSRGRLFVASRSSITAFEIG
RGGTLSGRRDIRRDLPNSGAHSFRYIALGPDARLYVSLGSPCNICVPGGLQGTIVSMN
QDGSDLRRVAWGVRNSVGFDWRGGRMFFTDNGADRMGDDVPPDELNALRPGGFYGFPY
FGGQVPLTGFEDAMPPARQIPPVFNFQAHVAALGIHFFRSLGGDALVAQHGSWNRSVP
VGYQVVRVRFRGGRPVSAATFLRNVGRPVDVKEAPDGAILVSDDAGGAIHIFRR"
misc_feature 125261..126247
/locus_tag="SMa0226"
/note="Glucose/sorbosone dehydrogenases [Carbohydrate
transport and metabolism]; Region: COG2133"
/db_xref="CDD:225044"
gene 126420..127766
/gene="gdhA"
/locus_tag="SMa0228"
/db_xref="GeneID:1235347"
CDS 126420..127766
/gene="gdhA"
/locus_tag="SMa0228"
/EC_number="1.4.1.4"
/function="Small molecule metabolism; Central intermediary
metabolism; amino acids"
/note="converts 2-oxoglutarate to glutamate; in
Escherichia coli this enzyme plays a role in glutamate
synthesis when the cell is under energy restriction; uses
NADPH; forms a homohexamer"
/codon_start=1
/transl_table=11
/product="glutamate dehydrogenase"
/protein_id="NP_435368.1"
/db_xref="GI:16262575"
/db_xref="GeneID:1235347"
/translation="MNVDEKLEPILAEVLRRNGGEHEFHQAVREVLESLGRVIAKHPR
YAENALIERICEPERQIIFRVPWVDDKGQVQINRGFRVQFNSALGPYKGGIRFHPSVN
IGIIKFLGFEQTFKNALTGMPIGGGKGGSDFNPRGRSDGEIMRFCQSLMTELHRHLGE
YTDVPAGDIGVGGREIGYMFGQYKRLTNRYEAGVLTGKALFYGGSRARKEATGYGATY
FVQRMIATKGLDFEGKRVTVSGSGNVAIYTMEKVIEFGGKIVACSDSNGYVVDEDGID
LELVKEIKEVRRERISEYARLKGAGTHYIEAGSVWDVPCDVAMPSATQNELTGKDART
LVKNGVLAVGEGANMPCTPEAVRIFQEAGVLFAPGKAANAGGVATSALEMQQNASRDS
WTFEQTEARLATIMQAIHDRCAETAEEYGTPGDYVLGANIAGFVRVAEAMDALGVI"
misc_feature 126420..127763
/gene="gdhA"
/locus_tag="SMa0228"
/note="glutamate dehydrogenase; Provisional; Region:
PRK09414"
/db_xref="CDD:181834"
misc_feature 126588..126980
/gene="gdhA"
/locus_tag="SMa0228"
/note="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain;
Region: ELFV_dehydrog_N; pfam02812"
/db_xref="CDD:202408"
misc_feature 127005..127760
/gene="gdhA"
/locus_tag="SMa0228"
/note="NAD(P) binding domain of glutamate dehydrogenase,
subgroup 2; Region: NAD_bind_2_Glu_DH; cd05313"
/db_xref="CDD:133455"
misc_feature order(127143..127151,127209..127214,127383..127388,
127455..127463)
/gene="gdhA"
/locus_tag="SMa0228"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133455"
gene 128085..128507
/locus_tag="SMa0229"
/db_xref="GeneID:1235348"
CDS 128085..128507
/locus_tag="SMa0229"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435369.1"
/db_xref="GI:16262576"
/db_xref="GeneID:1235348"
/translation="MSSIMVSSNLPLPFIGATDYRLLSRLAYQALSRDFDIAAELIEK
LERPCVLPDDQVPPDVVKIGSIVTCEVEDGPCRTFSLVYPDDVDAEKGRISVLTPVGV
ALLGLRPGQAVEWFSRDGQRNHLIVVRVEDDVKDELAL"
misc_feature 128103..128477
/locus_tag="SMa0229"
/note="nucleoside diphosphate kinase regulator;
Provisional; Region: PRK05753"
/db_xref="CDD:180236"
misc_feature 128271..128477
/locus_tag="SMa0229"
/note="Transcription elongation factor, GreA/GreB, C-term;
Region: GreA_GreB; pfam01272"
/db_xref="CDD:201702"
gene 128727..129278
/locus_tag="SMa0232"
/db_xref="GeneID:1235349"
CDS 128727..129278
/locus_tag="SMa0232"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435370.2"
/db_xref="GI:193782554"
/db_xref="GeneID:1235349"
/translation="MTRRKLERCAMSREAFCQLTAGDLNILMSMLDETGHTESFTILL
REKLNYASVFFREDIPENVVTLDTQVGYTVNGVRTGPHLLVRNAAGRPANSAISVRTM
RGLALLGLAVGERTEILGEDGWPETLAVERIVFQPESEARLKQTSTEPVQLIDHAPQV
VNFRPRPRKAAIPHDDDPGPSAA"
misc_feature 128727..129134
/locus_tag="SMa0232"
/note="Uncharacterized conserved protein, YhbC family
[Function unknown]; Region: COG0782"
/db_xref="CDD:223853"
gene complement(129300..130691)
/gene="otsA"
/locus_tag="SMa0233"
/db_xref="GeneID:1235350"
CDS complement(129300..130691)
/gene="otsA"
/locus_tag="SMa0233"
/EC_number="2.4.1.15"
/note="glimmer prediction; Very similar to
trehalose-6-phosphate synthase (OtsA) of Rhizobium sp.
NGR234 sym plasmid. S. meliloti appears to lack OtsB"
/codon_start=1
/transl_table=11
/product="OtsA trehalose-6-phosphate synthase"
/protein_id="NP_435371.1"
/db_xref="GI:16262578"
/db_xref="GeneID:1235350"
/translation="MSRLVIVSNRVPVPDKGGIAPAGGLAVALKVALEEHGGIWMGWS
GRSSGENEPEPLAQLHQGNITYALTDLTDTDVGEYYHGFANRVLWPICHYRLDLAEYG
RKEMAGYFRVNRFFAHRLAPLVRPDDVIWVHDYHLIPLAAELRQMGLKNRIGFFLHIP
WPPADVLFTMPVHEEIMRGLSHYDVVGFQTDHDLENFAGCLRREGIGDELGGGRFSAY
GRVFKGGIYAIGIETAAFAEFAKKALTNKTVRKARESIEHRSLIIGVDRLDYSKGITQ
RIDAFERFILANPAQQGRVTYLQITPKSRSEVPEYEAMQRTVAEQAGRVNGALGAVDW
VPIRYINRSVGRHILAGLYRLGKVGLVTPLRDGMNLVAKEYVAAQDPDDPGVLVLSRF
AGAARDLKGALLVNPYDIEGTANAMARALSMPLEERKDRWKTMMDHLLEHDVSRWCRD
FLNDLATSPDPSG"
misc_feature complement(129324..130685)
/gene="otsA"
/locus_tag="SMa0233"
/note="Trehalose-6-Phosphate Synthase (TPS) is a
glycosyltransferase that catalyses the synthesis of
alpha,alpha-1,1-trehalose-6-phosphate from
glucose-6-phosphate using a UDP-glucose donor. It is a key
enzyme in the trehalose synthesis pathway. Trehalose is
a...; Region: GT1_TPS; cd03788"
/db_xref="CDD:99963"
misc_feature complement(129324..130685)
/gene="otsA"
/locus_tag="SMa0233"
/note="alpha,alpha-trehalose-phosphate synthase
[UDP-forming]; Region: trehalose_OtsA; TIGR02400"
/db_xref="CDD:233848"
misc_feature complement(order(129570..129572,129579..129584,
129645..129647,129876..129878,129891..129893,
130218..130220,130284..130286,130290..130292,
130452..130454,130608..130613,130662..130664))
/gene="otsA"
/locus_tag="SMa0233"
/note="active site"
/db_xref="CDD:99963"
misc_feature complement(129888..129914)
/gene="otsA"
/locus_tag="SMa0233"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:99963"
gene complement(131106..132884)
/locus_tag="SMa0235"
/db_xref="GeneID:1235351"
CDS complement(131106..132884)
/locus_tag="SMa0235"
/EC_number="4.2.1.9"
/function="Small molecule metabolism"
/note="catalyzes the formation of 3-methyl-2-oxobutanoate
from 2,3,-dihydroxy-3-methylbutanoate"
/codon_start=1
/transl_table=11
/product="dihydroxy-acid dehydratase"
/protein_id="NP_435372.1"
/db_xref="GI:16262579"
/db_xref="GeneID:1235351"
/translation="MTDKPQRRLRSQDWFDNPDHIDLTALYLERFMNYGVTPEELRCG
KPIIGIAQSGSDLTPCNRVHMDLAKRVRDGIRDAGGIPIEFPTHPIFENCKRPTAALD
RNLAYLGLVEILYGYPLDGVVLTTGCDKTTPSALMAASTVDIPAIVLSGGPMLDGWHE
GDLVGSGTVIWRMRRKLAAGEIDREEFMQAALDSAPSVGHCNTMGTASTMNAMAEALG
MSLTGCGAIPAAYRERGQMAYRTGRRAVELVFEDLKPSDILTREAFLNAIRVNSAIGG
STNAQPHLAAMAKHAGVELYPDDWQVHGFDIPLLANIQPAGAYLGERYHRAGGTPAIM
WELLKAGKLDGGCRTVTGRTVAENLEGREPTDREVIRPFDEPLKEKAGFLVLKGNLFD
FAIMKMSVVSDDFRKRYLQEPGREGVFEGKAVVFDGSEDYHKRINDPELDIDENTILV
IRGAGPLGWPGSAEVVNMQPPDHLLKRGIRSLPTIGDGRQSGTADSPSILNASPESAA
GGGLAWLRSGDVIRIDFNLGRCDMLVSDEDIERRKADGIPAVPADATPWQRIYRKSVT
QLSDGAVLEGAADFRQIAKNMPRHNH"
misc_feature complement(131109..132884)
/locus_tag="SMa0235"
/note="dihydroxy-acid dehydratase; Provisional; Region:
PRK13017"
/db_xref="CDD:237272"
gene complement(132893..133774)
/locus_tag="SMa0237"
/db_xref="GeneID:1235352"
CDS complement(132893..133774)
/locus_tag="SMa0237"
/function="Small molecule metabolism; Central intermediary
metabolism; amino acids"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435373.1"
/db_xref="GI:16262580"
/db_xref="GeneID:1235352"
/translation="MSGKTKIAFLGTGLMGAPMARRLLGAGFSVTVWNRDAAKAEPLA
ADGADIAASPADAVAGAAIVFTMLTNGQAVSEVLFERGVADSLAEGRIVVDCSSIAPQ
IAREHARRLAEKGIRHLDAPVSGGVVGAAAGTLAIMAGGDGAAVESLKEVFAVLGRVT
HVGPSGAGQVCKLANQQIVAVTIGAVAEAMVLVEAGGASRAAFRDAIRGGFAESRILE
LHGARMVERNFAPGGASNNQLKDLNAVMAMADELSLELPLTRQVRQEFADFVESGGGE
QDHSGLLLQLEKLNPRN"
misc_feature complement(132914..133762)
/locus_tag="SMa0237"
/note="3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism];
Region: MmsB; COG2084"
/db_xref="CDD:224995"
misc_feature complement(<133259..133759)
/locus_tag="SMa0237"
/note="6-phosphogluconate dehydrogenase-like protein;
Reviewed; Region: PRK09599"
/db_xref="CDD:236582"
gene complement(133771..134754)
/locus_tag="SMa0241"
/db_xref="GeneID:1235353"
CDS complement(133771..134754)
/locus_tag="SMa0241"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; similar to SMB0663 of S.
meliloti pSymb"
/codon_start=1
/transl_table=11
/product="epimerase"
/protein_id="NP_435374.1"
/db_xref="GI:16262581"
/db_xref="GeneID:1235353"
/translation="MHILIIGAAGMVGRKLTQRLVKDGTLGANSVEKLTLVDVVAPER
PQGFAGTVVAREGDLSASGEAEKLVEGRPDVIFHLAAIVSGEAELDFDKGYRINLDGT
RYLFDAIRLAHDQDGYKPRLVFTSSIAVVGAPLPFPIPDDYHLTPLTSYGTQKAICEL
LLSDYSRRGFFDGIGIRLPTICIRPGKPNKAASGFFSNILREPLVGQEAVLPVSEDVR
HWHTSPRSAVGFLIHGATINLEKVGPRRNLSMPGLSATVGEQIEALRRVAGEKAVQLI
RREPDEMIMKMVAGWAPGFEAKRATELGFTAEKSFDEIIRVHIEDELGGKL"
misc_feature complement(133786..134754)
/locus_tag="SMa0241"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:223528"
misc_feature complement(133810..134754)
/locus_tag="SMa0241"
/note="Escherichia coli Gne (a
nucleoside-diphosphate-sugar 4-epimerase)-like, extended
(e) SDRs; Region: Gne_like_SDR_e; cd05238"
/db_xref="CDD:187549"
misc_feature complement(order(134212..134223,134290..134292,
134302..134304,134374..134382,134464..134466,
134512..134520,134641..134649,134719..134730,
134734..134736))
/locus_tag="SMa0241"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187549"
misc_feature complement(order(134290..134292,134302..134304,
134374..134376,134461..134463))
/locus_tag="SMa0241"
/note="active site"
/db_xref="CDD:187549"
misc_feature complement(order(134122..134124,134158..134160,
134215..134217,134302..134304,134374..134376))
/locus_tag="SMa0241"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187549"
gene 134949..136394
/locus_tag="SMa0244"
/db_xref="GeneID:1235354"
CDS 134949..136394
/locus_tag="SMa0244"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; C-terminus similar to actin
interacting protein, a eukaryotic mitochondrial protein
with lactate activity; also has similarity to glycolate
oxidases"
/codon_start=1
/transl_table=11
/product="Dehydrogenase, FAD-dependent"
/protein_id="NP_435375.1"
/db_xref="GI:16262582"
/db_xref="GeneID:1235354"
/translation="MTSAGTIEDAKGPAELRLALRQMLGEDIVLSETEEMLRFCRDWH
GDVTTGTVAVIRPRSTQQVAAAVKACRELGLSIVPQGGNTGLVLGAIPDAPERQVVLS
LSRMNRIRKIDPADFSAVVESGCILSELKDAIAKMGMFFPLALGAQGSCQIGGNVSTN
AGGVNVLRYGMTRELVLGLEVVLPDGSILEGLSTLRKDNRGIDLKQLFIGAEGTLGII
TAVSITLTPYPDHVATALLGLASLEDAIRLYRRARRDCCDLMSAFEFMPPLAFTLAQE
AMPDLPIPISAEYPAYVLMEISGSGLVDVDDLMQRFLEGAMEEGLVLDGTIAASQTQA
RNLWLIREGMNEGQAKRGTHMRTDISVPLSQLASFVEEAEKAVSEALPGAVSVSYGHV
GDGNVHLNVLPPAGSTPEERIQLIYKAKTVVNEVLDRYTGSISAEHGIGRLKRPDFDA
RLPATRRKLLTALKHAVDPEMIMNPGCQLRF"
misc_feature 135003..136388
/locus_tag="SMa0244"
/note="FAD/FMN-containing dehydrogenases [Energy
production and conversion]; Region: GlcD; COG0277"
/db_xref="CDD:223354"
misc_feature 135105..135518
/locus_tag="SMa0244"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:216574"
gene 136409..137119
/locus_tag="SMa0246"
/db_xref="GeneID:1235355"
CDS 136409..137119
/locus_tag="SMa0246"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; C-terminus similar to bacterial
regulatory proteins, gntR family"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435376.2"
/db_xref="GI:193782555"
/db_xref="GeneID:1235355"
/translation="MAAMDFGQISRSEHLPARIAAKIGREITEGRIAPGEKLPTEHLL
ATTFGVSRSVVREAIAQLRNEGLVETRQGVGAFATEIERRQSLRIEQGDLANRGSFRD
LFQLRIPLEVEAARLAAIHHTPQDLGKIDEALQQMTGAEKWTEQGIVADLAFHRAIAA
ATHNEYFLLFIGFIAERISLAINAARAAAILEEIVEVTIAEHVSIRNGVSARDPVQAE
EAMRHHLNGAAARLDLTI"
misc_feature 136430..137104
/locus_tag="SMa0246"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:225097"
misc_feature 136451..136639
/locus_tag="SMa0246"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(136454..136456,136523..136525,136529..136534,
136556..136570,136574..136579,136586..136588,
136616..136621,136625..136636)
/locus_tag="SMa0246"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 136712..137089
/locus_tag="SMa0246"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:214892"
gene 137290..138486
/locus_tag="SMa0247"
/db_xref="GeneID:1235356"
CDS 137290..138486
/locus_tag="SMa0247"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435377.1"
/db_xref="GI:16262584"
/db_xref="GeneID:1235356"
/translation="MSGGFLVSFEQALSAESIQPADASSAMLVGRVWSKTAGGPCPVL
ISEGEVFDLTPLAATISALLEIDGLVDALRDPSRFASLGSLDAFLRGEAGDLLAPADL
QAVKAAGVTFADSMLERVIEEQAKGDPLRAQEIRGRLAPVLGDNLKGLVAGSDKAAEV
KKLLQELGLWSQYLEVGIGPDAEIFTKAQPMSSVGCGAYIGIHPKSDWNNPEPEVVLA
VTSKGKIVGATLGNDVNLRDFEGRSALLLSKAKDNNASCSIGPFIRLFDGAFTIEDVK
QAEVSLVVDGKEGFKMTGISPMSAISRSPEDLVSQLLNDNHQYPDGVVFFLGTMFAPV
KDRRGTGLGFTHEIGDRVEISTPRLGRLVNWVDHSDRCPKWSFGLGALMKNLAERGLL
QAKREG"
misc_feature 137326..138465
/locus_tag="SMa0247"
/note="Fumarylacetoacetate (FAA) hydrolase family protein
[General function prediction only]; Region: COG3970"
/db_xref="CDD:226479"
misc_feature 137827..138381
/locus_tag="SMa0247"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:216570"
gene 138487..139020
/locus_tag="SMa0249"
/db_xref="GeneID:1235357"
CDS 138487..139020
/locus_tag="SMa0249"
/function="Miscellaneous; Hypothetical/Partial homology"
/codon_start=1
/transl_table=11
/product="TRAP-type small permease component"
/protein_id="NP_435378.1"
/db_xref="GI:16262585"
/db_xref="GeneID:1235357"
/translation="MQKAIDTFYKLLELLLIVLLAGMAVMVFLNVVLRYGFNSGINVS
DEMSRYFFVWLTFIGAVVTFRENSHVGVETLVSLFGRKGRIICMILSNIVVIAVSAIF
FWGTWKQSPINASMAAPVTGISMLWVYGIGYFTGAGVVLIALERLVRLLTGRVTEEEI
AAFAGENMTLEQLAERT"
misc_feature 138487..139005
/locus_tag="SMa0249"
/note="TRAP-type C4-dicarboxylate transport system, small
permease component [Carbohydrate transport and
metabolism]; Region: DctM; COG3090"
/db_xref="CDD:225632"
gene 139020..140297
/locus_tag="SMa0250"
/db_xref="GeneID:1235358"
CDS 139020..140297
/locus_tag="SMa0250"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; C-terminus with DedA domain"
/codon_start=1
/transl_table=11
/product="dedA-like protein"
/protein_id="NP_435379.1"
/db_xref="GI:16262586"
/db_xref="GeneID:1235358"
/translation="MTLVVFIVSLLGAMAIGVPVAFSLMFCGVVLMWYMGMFNTQIIA
QNMIAGADTFTLLAIPFFILAGELMNAGGLSRRIIDFAIACVGHIRGGLGIVAIMAAV
IMASISGSAAADTAALAAILIPMMAKAGYNVPRSAGLIAAGGVIAPVIPPSMAFIVFG
VAANVSITQLFMAGIVPGLIMGIALVATWLLVVRKDDIQPLPRTPMKERVGATGRALW
ALGMPVIILGGIKAGVVTPTEAAVVAAVYALFVGMVIYRELKPRDLPGVILQAAKTTA
VIMFLVCAALVSSWLITAANIPSEITGFISPLIDRPTLLMFVIMLVVLVVGTALDLTP
TILILTPVLMPIIKQAGIDPVYFGVLFIMNTCIGLLTPPVGVVLNVVSGVGRVPLGKV
IVGVTPFLVAQILVLFLLVLFPDIVIVPARWLH"
misc_feature 139038..140267
/locus_tag="SMa0250"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:219185"
misc_feature 139158..140291
/locus_tag="SMa0250"
/note="TRAP-type C4-dicarboxylate transport system, large
permease component [Carbohydrate transport and
metabolism]; Region: DctQ; COG1593"
/db_xref="CDD:224509"
gene 140349..141353
/locus_tag="SMa0252"
/db_xref="GeneID:1235359"
CDS 140349..141353
/locus_tag="SMa0252"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; with partial homology to
hypothetical protein"
/codon_start=1
/transl_table=11
/product="TRAP-type periplasmic solute-binding protein"
/protein_id="NP_435380.1"
/db_xref="GI:16262587"
/db_xref="GeneID:1235359"
/translation="MRKLLLATTAIAFGLSAAAPAFAEFNDRNIRVSNGINEDHPVGN
GIKAMQACLDQKSGGKLKLTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPA
LGVFDLPFLFANAQEAYTVLDGDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVT
KWEDFEGMKVRVMQNNIFLDTFQNLGANATPMAFGEVFSALETKAIDAQENPYVTIDT
SKFFEVQKYVTETNHAYTPFLFLFSKPIFDSYTPEEQAALRECAVVGRDEERKVIQDL
NKKSLEKIKEAGLEVNTLSAEEQARIREKSMVVYEKHKAEIGAEVVDAILAKLEEIRK
"
misc_feature 140349..141341
/locus_tag="SMa0252"
/note="TRAP-type C4-dicarboxylate transport system,
periplasmic component [Carbohydrate transport and
metabolism]; Region: DctP; COG1638"
/db_xref="CDD:224553"
misc_feature 140460..141284
/locus_tag="SMa0252"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; pfam03480"
/db_xref="CDD:202660"
gene 141517..142197
/locus_tag="SMa0254"
/db_xref="GeneID:1235360"
CDS 141517..142197
/locus_tag="SMa0254"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435381.1"
/db_xref="GI:16262588"
/db_xref="GeneID:1235360"
/translation="METSLYLPVKGFLEKAGYVVKGEVDGCDLVGLSDDDPPVVVICE
LKLRFNLELILQAVDRAAVADEVWIAARVSAKGKGREADKRYRDLCRRLGVGMLGISD
AGDVSVIVGSVTPMPRTNPKRRSKLMREHRRRRGDPAIGGSTRAPVMTAYRQQALGCA
LALTSGPLRVREIRSSVPDAGKILLANVYGWFERLDRGVYGLTAAGREALQRWPQQDM
QAKTAVPA"
misc_feature 141520..142194
/locus_tag="SMa0254"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5482"
/db_xref="CDD:227769"
gene 142327..143304
/locus_tag="SMa0255"
/db_xref="GeneID:1235361"
CDS 142327..143304
/locus_tag="SMa0255"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="3'-5' exonuclease of DNA polymerase III"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="NP_435382.1"
/db_xref="GI:16262589"
/db_xref="GeneID:1235361"
/translation="MTSQLDMFARDVRPAAARAEASRARRQTSTSFSETEMLAALKAT
GRYRILRKLEARTVASEVRPGFPLRGVILDTETTGLDARKCEIIEIGLVSFTYNEEGE
IGDVVAVYGGLQQPTIAIPPDITRLTGITDAMVAGQSIDIAAVQAIVGPADLIIAHNA
GFDRPFCEAFSDVFVRKAWACSVSEIDWSGRGFEGTKLGYLIGQSGYFHDGHRAVDDC
FALLGVLEQSSGGAALPPFAELYKASQRSRVRIFAENAPFDLKDVLKARGYRWSDGSD
GRPKSWWIEVAEEELEAELGFLRKEIYRWDEADPPTQRLTAFDRYRARR"
misc_feature 142423..143301
/locus_tag="SMa0255"
/note="DNA polymerase III subunit epsilon; Validated;
Region: PRK09182"
/db_xref="CDD:236397"
misc_feature 142435..>142605
/locus_tag="SMa0255"
/note="DnaQ-like (or DEDD) 3'-5' exonuclease domain
superfamily; Region: DnaQ_like_exo; cl10012"
/db_xref="CDD:245226"
misc_feature 142537..143004
/locus_tag="SMa0255"
/note="DEDDh 3'-5' exonuclease domain family; Region:
DEDDh; cd06127"
/db_xref="CDD:176648"
misc_feature order(142546..142557,142561..142563,142798..142803,
142807..142815,142960..142962,142975..142977)
/locus_tag="SMa0255"
/note="active site"
/db_xref="CDD:176648"
misc_feature order(142546..142557,142561..142563,142798..142803,
142807..142812,142960..142962,142975..142977)
/locus_tag="SMa0255"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176648"
misc_feature order(142546..142548,142552..142554,142813..142815,
142960..142962,142975..142977)
/locus_tag="SMa0255"
/note="catalytic site [active]"
/db_xref="CDD:176648"
gene complement(143473..145566)
/locus_tag="SMa0257"
/db_xref="GeneID:1235362"
CDS complement(143473..145566)
/locus_tag="SMa0257"
/note="glimmer prediction; NADH:flavin oxidoreductase/NADH
oxidase PF00724; homologous to DhtM (accession #P16099)
from Methylophilus methylotrophus"
/codon_start=1
/transl_table=11
/product="methylamine"
/protein_id="NP_435383.1"
/db_xref="GI:16262590"
/db_xref="GeneID:1235362"
/translation="MSRDSRFDILFEPVKIGPVTARNRFYQVPHCSGMGYRYPNAEAH
LRGMKAEGGWAVVSTQEAEIHPTSDLTPANEARLWDDGDLPALSAVTERVHAHGSLAA
IQLVHNGLHVANRFSRMIPLAPSHAVSDSLDPVQARAMDKADITDMRRWYRNAALRAK
KAGFDIVYLYAGHDMSVLQHFLSRRHNDRSDEYGGSFENRLRLFREILDDVREAIGDT
CALAVRLAVDELMGPSGITCEGEGKDIISALGELPDLWDVNLSDWSNDSQTARFSEEG
YQEPYIRFVKSVTTKPVVGVGRYTSPDSMVRVVKQGILDFIGAARPSIADPFLPKKIE
EGRIDDIRECIGCNICTSGDNTNVPMRCTQNPTVGEEWRKGWHPETIARSEAPEPALI
IGGGPAGLEAARALAQRGVDVMLAEGGGEWGGRVARECRLPGLATWGRVRDWRIGQLS
TRVNAELYLHSPLSAADILQYGIPHVAIATGASWRTDGVGRTHRMALDFLSEGILVSP
DAILSEGAEAVPSDGPVVVFDDDCFYMGSVLAELLARRGRTVTFVTPESQVSPWSRNT
LEQARIQKRLIGLGVEIVTAMALAGRTKDQLELSCVYSGRSRPVDCATLVPVTARLPD
ETLWLELKAREAEWADAGIKTITRLGDCLAPGLIAAAVYSGHQYARTYQEQVDKDRVP
FMREDIARLYGLRSG"
misc_feature complement(144454..145560)
/locus_tag="SMa0257"
/note="Trimethylamine dehydrogenase (TMADH) and histamine
dehydrogenase (HD) FMN-binding domain. TMADH is an
iron-sulfur flavoprotein that catalyzes the oxidative
demethylation of trimethylamine to form dimethylamine and
formaldehyde. The protein forms a...; Region:
TMADH_HD_FMN; cd02929"
/db_xref="CDD:239239"
misc_feature complement(143554..145539)
/locus_tag="SMa0257"
/note="mycofactocin system FadH/OYE family oxidoreductase
2; Region: mycofact_OYE_2; TIGR03997"
/db_xref="CDD:234436"
misc_feature complement(order(144514..144516,144601..144609,
144673..144675,144679..144681,144895..144897,
145048..145050,145057..145059,145255..145257,
145384..145389,145474..145485))
/locus_tag="SMa0257"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239239"
misc_feature complement(order(144475..144477,144481..144486,
144493..144495,144505..144510,144517..144519,
144526..144528,144535..144537,144604..144609,
144895..144897,145042..145044,145048..145053,
145057..145062,145255..145257,145297..145299,
145357..145362,145384..145386,145465..145467,
145474..145476,145480..145482))
/locus_tag="SMa0257"
/note="active site"
/db_xref="CDD:239239"
misc_feature complement(order(144454..144459,144499..144501,
144508..144510,145012..145017,145153..145155,
145201..145203,145300..145302,145309..145314,
145318..145320,145327..145332,145336..145338,
145423..145425))
/locus_tag="SMa0257"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239239"
misc_feature complement(145042..145044)
/locus_tag="SMa0257"
/note="putative catalytic residue [active]"
/db_xref="CDD:239239"
misc_feature complement(order(144481..144483,144517..144519,
144526..144528,144535..144537))
/locus_tag="SMa0257"
/note="4Fe-4S cluster binding site [ion binding]; other
site"
/db_xref="CDD:239239"
misc_feature complement(<144262..144393)
/locus_tag="SMa0257"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
gene complement(145822..146667)
/locus_tag="SMa0259"
/db_xref="GeneID:1235363"
CDS complement(145822..146667)
/locus_tag="SMa0259"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435384.1"
/db_xref="GI:16262591"
/db_xref="GeneID:1235363"
/translation="MTAQDLYRIRDFVPDFDTIAAEFAERSWAVSARADVRADIRYGS
GVREVIDLILPERVQAGAPLHVFVHGGYWRSGEKINYRFVAAPVLAAGGIAALVEYDL
MPGKRLDVLVDQVRRSVLWLQAHAGDFGADPARLTVSGHSAGAHLASFLAATGPEEAY
PPSLPTLQGLLLLSGIYDLSGIPDSFLRHEAEMTPMEAAAWSPLTSSQLPCPLRIIAY
GADETAPFQNQAAGLCELLRAQDKSAELLPVPDLNHMSIVLDLADTDGVLGRQLHDLV
AQPTR"
misc_feature complement(<146215..>146487)
/locus_tag="SMa0259"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cd00312"
/db_xref="CDD:238191"
misc_feature complement(145906..146472)
/locus_tag="SMa0259"
/note="alpha/beta hydrolase fold; Region: Abhydrolase_3;
pfam07859"
/db_xref="CDD:219611"
gene complement(146683..148146)
/gene="gabD3"
/locus_tag="SMa0260"
/db_xref="GeneID:1235364"
CDS complement(146683..148146)
/gene="gabD3"
/locus_tag="SMa0260"
/EC_number="1.2.1.16"
/function="Small molecule metabolism; Central intermediary
metabolism; pool of unassigned individual reversible
reactions"
/note="glimmer prediction; similar to E. coli GabD
(accession P25526) and A. tumefaciens AttK (accession
AAD43988); Aldehyde family, PF00171"
/codon_start=1
/transl_table=11
/product="GabD3 succinate-semialdehyde dehdyrogenase"
/protein_id="NP_435385.1"
/db_xref="GI:16262592"
/db_xref="GeneID:1235364"
/translation="MTFHAKFSGYADPALHAAGLYIGGKWQSGSGITVLDPSTGNLLA
EVADASIEDAQRAVDAADAAAAGWRATPARQRSEILRRWYQLMTQHAEELATLIALEN
GKALADARGEVAYAAEFFRWYAEEATRIPGEFRHTPSGSHNILVDHEPIGIAVLITPW
NFPAAMATRKIGPALAAGCTVILKPASETPLTAYAMARLGEEAGVPPGVVNVLTTSNP
GGITNAMLADPRVRKLSFTGSTGVGRVLLAEAAKSVVSCSMELGGNAPFIVFDDADLE
VALDGAMIAKMRNAGEACTAANRFYVQAGIHDAFVAGLTARMKSLKLGPGYDPETQCG
PMITQNAVRKIDRLVSEALAAGARATTGGKPLTENGYFYPPTVLENVPVNASIAREEI
FGPVAPVYKFESDDEAIRLANNTEYGLAAYIYSRDLKRAMKVGKRIETGMLGINRGLM
SDPAAPFGGVKQSGLGREGGVTGILEFMEPKYFAVDY"
misc_feature complement(146704..148071)
/gene="gabD3"
/locus_tag="SMa0260"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:215767"
misc_feature complement(146692..148047)
/gene="gabD3"
/locus_tag="SMa0260"
/note="Mitochondrial succinate-semialdehyde dehydrogenase
and ALDH family members 5A1 and 5F1-like; Region:
ALDH_F5_SSADH_GabD; cd07103"
/db_xref="CDD:143421"
misc_feature complement(order(146692..146712,146746..146748,
146761..146763,146779..146784,146791..146793,
146809..146829,146833..146835,146842..146844,
146848..146850,146860..146865,146869..146871,
147073..147075,147211..147213,147223..147225,
147394..147396,147403..147405,147415..147417,
147451..147453,147700..147702,147715..147723,
147739..147765,147769..147774,147781..147783,
147904..147906,147931..147933))
/gene="gabD3"
/locus_tag="SMa0260"
/note="tetramerization interface [polypeptide binding];
other site"
/db_xref="CDD:143421"
misc_feature complement(order(146776..146778,146890..146892,
146968..146970,146974..146976,147265..147267,
147361..147369,147409..147414,147421..147423,
147430..147441,147586..147591,147595..147597,
147640..147642,147664..147678))
/gene="gabD3"
/locus_tag="SMa0260"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143421"
misc_feature complement(order(147265..147267,147274..147276,
147367..147369,147664..147666))
/gene="gabD3"
/locus_tag="SMa0260"
/note="catalytic residues [active]"
/db_xref="CDD:143421"
gene complement(148163..149362)
/locus_tag="SMa0263"
/db_xref="GeneID:1235365"
CDS complement(148163..149362)
/locus_tag="SMa0263"
/EC_number="1.1.1.-"
/note="glimmer prediction; similar to Agrobacterium
tumefaciens AttL (accession AAD43989); iron-containing
alcohol family, PF00465"
/codon_start=1
/transl_table=11
/product="alcohol dehydrogenase"
/protein_id="NP_435386.1"
/db_xref="GI:16262593"
/db_xref="GeneID:1235365"
/translation="MNLFGTLRAPRELLFGAGQRHALGGIAAKLGHRALIVTDTRLAV
DADLLALVRRLEEAGLEVMVDSSTLPDVPVESAIVSAAAASGFAPDLVIGIGGGSCLD
MAKCVTLLLTHGGRPQDYYGEYAVPGPVMPLIAIPTTAGTGSEVTPVAVLSDAERSLK
VGISSPHLIPAVSICDPELTLSCPPGLTAIAGADALTHAIEAFTAIRREPVPGIAQQR
VFVGKNELSDHFALSAITLLWQGLERACKDGADAGARETVMLGATLAGLAFGVAGTAA
AHAIQYPVGALTHTAHGLGVACLMPYVMTWNAPLIRDELAQIAHAAGLGGPDEVIPAL
VSLFERIGIPATLRDLGLEEDRIDWVAEQSSGIARLIQNNPRPLNPHEMRNLVAAAHC
GDRSRLN"
misc_feature complement(148190..149353)
/locus_tag="SMa0263"
/note="Alcohol dehydrogenase, class IV [Energy production
and conversion]; Region: EutG; COG1454"
/db_xref="CDD:224371"
misc_feature complement(148202..149335)
/locus_tag="SMa0263"
/note="Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH); Region:
DHQ_Fe-ADH; cl02872"
/db_xref="CDD:243222"
misc_feature complement(order(148487..148489,148517..148519,
148529..148531,148769..148771,148781..148783,
148802..148804,148826..148828,148880..148885,
148940..148942,148946..148951,149048..149050,
149057..149059,149066..149074,149246..149248))
/locus_tag="SMa0263"
/note="active site"
/db_xref="CDD:173927"
misc_feature complement(order(148487..148489,148826..148828,
148940..148942,148946..148951,149066..149074,
149246..149248))
/locus_tag="SMa0263"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:173927"
misc_feature complement(order(148487..148489,148529..148531,
148781..148783))
/locus_tag="SMa0263"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173927"
gene complement(149384..150388)
/locus_tag="SMa0265"
/db_xref="GeneID:1235366"
CDS complement(149384..150388)
/locus_tag="SMa0265"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435387.1"
/db_xref="GI:16262594"
/db_xref="GeneID:1235366"
/translation="MRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSH
GLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILK
ETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVA
IGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAI
APFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGS
IPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEAA
"
misc_feature complement(149396..150388)
/locus_tag="SMa0265"
/note="Malate/L-lactate dehydrogenases [Energy production
and conversion]; Region: COG2055"
/db_xref="CDD:224966"
gene 150483..151175
/locus_tag="SMa0267"
/db_xref="GeneID:1235367"
CDS 150483..151175
/locus_tag="SMa0267"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory protein,
gntR family, PF00392"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435388.1"
/db_xref="GI:16262595"
/db_xref="GeneID:1235367"
/translation="MVVAIAAERASRGAGIRPTSVVEGVYDSIYHRLMSLDIAPGARI
PIDVLARELGVSQTPIREALSRLEREGLVRKEHLIGYSAAPQWTRKQFEDLYAFRLLI
EPEAARLAAANMTPEALQQLENSAADMGHGEAPVDRNTRYSRFARADAQFHDEILKIA
GNDVIRSTLSNQHVHLHIFRLMFHIRVTQEALEEHESLLAAFRARDPQAAYDAMRVHI
ERSRDRLLSAFE"
misc_feature 150528..151172
/locus_tag="SMa0267"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:224715"
misc_feature 150540..150725
/locus_tag="SMa0267"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(150540..150542,150546..150548,150615..150617,
150618..150623,150645..150659,150663..150668,
150675..150677,150705..150710,150714..150725)
/locus_tag="SMa0267"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 150762..151142
/locus_tag="SMa0267"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:214892"
gene 151172..152764
/locus_tag="SMa0270"
/db_xref="GeneID:1235368"
CDS 151172..152764
/locus_tag="SMa0270"
/note="glimmer prediction; ABC transporter family,
PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435389.1"
/db_xref="GI:16262596"
/db_xref="GeneID:1235368"
/translation="MNAALPSNAVAPPPNRAVAALAAEGLGKAYGPITVLSDVTLEVH
AGEVHAIIGENGAGKSTLMKLLSGHVVPTAGHLLLEGKSVEFRNAVEAENAGIVLVHQ
EILLASDLTVAENLYLGREVGRGLLVNDKAMNSRAAELLARVGSAARPRDRVGELPLA
QRQLVQIARALLDERKVIIFDEPTAVLANDEVAALLDIVRSLRDHGVAVLYISHRLDE
VQALADRITVLRDGRMIGTWPAAGLGQREMAELMVGRELDMLYPHKRSATTAAPILSV
TNLAIDHGSQTVSFSVSPGEVLGIGGMVGAGRTELIEGLMGLRPSEAESIVLNGREIG
SRSVRTLMDAGLVYLTEDRKGKGLLLEEKLGPNLTLQALDTINPGVFLDKQGELSRLR
KAVADYDIRVRSMRLEASQLSGGNQQKLLLAKVMMADPSVIIIDEPTRGIDIGNKSQI
YDFIDGMVRAGKACIVISSEMPELVGLADRVLVMRAGRIVAELRGDEINEENVVYAAT
TGGCADVGEEKHDRSDSNTRTN"
misc_feature 151241..152701
/locus_tag="SMa0270"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:224053"
misc_feature 151241..151882
/locus_tag="SMa0270"
/note="First domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:213183"
misc_feature 151328..151351
/locus_tag="SMa0270"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213183"
misc_feature order(151337..151342,151346..151354,151475..151477,
151712..151717,151811..151813)
/locus_tag="SMa0270"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213183"
misc_feature 151466..151477
/locus_tag="SMa0270"
/note="Q-loop/lid; other site"
/db_xref="CDD:213183"
misc_feature order(151499..151510,151652..151669)
/locus_tag="SMa0270"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213183"
misc_feature 151700..151717
/locus_tag="SMa0270"
/note="Walker B; other site"
/db_xref="CDD:213183"
misc_feature 151724..151735
/locus_tag="SMa0270"
/note="D-loop; other site"
/db_xref="CDD:213183"
misc_feature 151799..151819
/locus_tag="SMa0270"
/note="H-loop/switch region; other site"
/db_xref="CDD:213183"
misc_feature 151979..152638
/locus_tag="SMa0270"
/note="Second domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:213182"
gene 152730..153725
/locus_tag="SMa0271"
/db_xref="GeneID:1235369"
CDS 152730..153725
/locus_tag="SMa0271"
/note="glimmer prediction; ABC-2 type transporter PF01061"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435390.1"
/db_xref="GI:16262597"
/db_xref="GeneID:1235369"
/translation="MTVATATLAPTNEGARIRWADLAPFIALAVIVLFGALVNPNFVS
SANLINVITRSAFIAIIAVGATFVISSGGLDLSVGSMMAFVTGIMIMAMNHLAPAFGA
WAIPMGAGVALLVGALCGLFNGLIVTVGRIEPFIVTLGTMGIFRAFITFMTDGGSLPI
DRSLREAYRPVYFGSFFGIPYPVLITFVVVMAGAFLLYKTKYGRRLKSAGSNVEVARF
SGVNVAGVRTGAYVIQGFCVAVAAICYVPRLGAATPTTGQLWELQVITAVVIGGTLLR
GGRGRIGGTVAGALILEVIANVMVLSDLVSEYLVAAVQGAIIIIAMLAHRFTANR"
misc_feature 152868..153530
/locus_tag="SMa0271"
/note="Branched-chain amino acid transport system /
permease component; Region: BPD_transp_2; pfam02653"
/db_xref="CDD:217165"
misc_feature 152892..153653
/locus_tag="SMa0271"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 153369..153425
/locus_tag="SMa0271"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 153755..154720
/locus_tag="SMa0273"
/db_xref="GeneID:1235370"
CDS 153755..154720
/locus_tag="SMa0273"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435391.1"
/db_xref="GI:16262598"
/db_xref="GeneID:1235370"
/translation="MKSIIRKAGLLLSTATLVLAQPLGTAQAQEKRIVAVSIPAATHG
WTGGVVYHAEQAEKEVEAAFPNVDVVLSTASSATAQVSALEDLSATRKLDALVILPFT
SEELTGPVEQIKKNGTFISVVDRGLTDPTIQDLYVAGDNIAVGANTARWLSDKLGGQG
EIVVLRGIPTVIDDERIKGFSDVIDKTNIKILDIQYANWNQDEAFKLMQDYLAKYPKI
DAVWANDDDMLLGVIEAVDRAGRKDIKYALGGNGMKQVIEMVKEGNERTPVSTPYPPS
MIKSAIYMTAAQFAGQAPMRGSFLLGAPLITPENADQFYFPDSPF"
misc_feature 153758..154717
/locus_tag="SMa0273"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:224791"
misc_feature 153851..154672
/locus_tag="SMa0273"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_3; cd06311"
/db_xref="CDD:107306"
misc_feature order(153887..153889,154124..154126,154280..154282,
154505..154507,154568..154570)
/locus_tag="SMa0273"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107306"
gene 154841..155428
/locus_tag="SMa0275"
/db_xref="GeneID:1235371"
CDS 154841..155428
/locus_tag="SMa0275"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; ThiJ/PfpI family, PF01965"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435392.1"
/db_xref="GI:16262599"
/db_xref="GeneID:1235371"
/translation="MSGKKILMLTGEFTEEYEIYVFQKGMEAVGHTVHVVCPDKKAGD
RIKTSLHDFEGDQTYTEKLGHYADINKTFSEVRPEEYDAVYAAGGRGPEYIRTDKRVQ
DMVRHFHDTGKPIFTICHGVQILMAVPGVLKGRKVAGLGACEPEVTAVGGTYIDVEPT
GAYVDGNMVSAKGWTGLAAFMRECLNVLGTKITHT"
misc_feature 154853..155407
/locus_tag="SMa0275"
/note="intracellular protease, PfpI family; Region: PfpI;
TIGR01382"
/db_xref="CDD:233389"
misc_feature 154853..155404
/locus_tag="SMa0275"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in a subgroup of proteins similar to PfpI
from Pyrococcus furiosus; Region: GATase1_PfpI_1; cd03169"
/db_xref="CDD:153243"
misc_feature 155195..155197
/locus_tag="SMa0275"
/note="conserved cys residue [active]"
/db_xref="CDD:153243"
gene complement(155598..155948)
/locus_tag="SMa0277"
/db_xref="GeneID:1235372"
CDS complement(155598..155948)
/locus_tag="SMa0277"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435393.1"
/db_xref="GI:16262600"
/db_xref="GeneID:1235372"
/translation="MEKHRIYSVSVASVYPHYVAKAEKKGRTKAEVDEIICWLTGYGP
QALDDQLAKNTSLENFFAQAPRMNPSRSLITGVICGVRVEEIQDTTMREIRYLDKLID
ELAKGKAMDKILRK"
misc_feature complement(155604..155936)
/locus_tag="SMa0277"
/note="Uncharacterized protein conserved in bacteria
(DUF2200); Region: DUF2200; pfam09966"
/db_xref="CDD:150620"
gene complement(156190..156489)
/locus_tag="SMa5016"
/db_xref="GeneID:6435254"
CDS complement(156190..156489)
/locus_tag="SMa5016"
/note="Has similarity to a short region in the carboxy-
termini of proteins annotated as aldehyde dehydrogenases;
Possible ORF fragment"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000332.1"
/db_xref="GI:193782556"
/db_xref="GeneID:6435254"
/translation="MVGFNGAKMSGYGAKGGLAHLATYLYTKSATFNARSHDFRSSGP
GGTQDFRSGYDDLHRPLASLARPGGIPSGTGVVGRARPDSRSIRLDRIIDLDDMQ"
gene complement(156800..157411)
/locus_tag="SMa0279"
/db_xref="GeneID:1235374"
CDS complement(156800..157411)
/locus_tag="SMa0279"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; weak homologies to
phosphatidylethanolamine N-methyltransferase (accession
Q05197) from Rhodobacter sphaeroides"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435395.1"
/db_xref="GI:16262602"
/db_xref="GeneID:1235374"
/translation="MGIYRDVILPRLCDLSMRNERLRPYRERVIGAAQGRVLEIGVGS
GLNLPFYGPVVGEVLALEPSAGLVAMAREAPRSDLPVSFIDASAEAIPLDDKSVDTVV
TTWTLCTIPDAAAALTEMRRVLRPGGKLLFVEHGLAPDRGVRWWQDTLTPVWRRISGG
CHLNRPIRSMIECGGFRMERVETGYMQGPKPMTFMYEGSARPE"
misc_feature complement(157013..157306)
/locus_tag="SMa0279"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(157100..157102,157148..157156,
157223..157228,157274..157294))
/locus_tag="SMa0279"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(157557..158345)
/locus_tag="SMa0280"
/db_xref="GeneID:1235375"
CDS complement(157557..158345)
/locus_tag="SMa0280"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435396.1"
/db_xref="GI:16262603"
/db_xref="GeneID:1235375"
/translation="MLDRTIPHNLARKAVLYRMVMPGHTCPYGLKTKDLLQRSGYEVD
DHHLTTREETDAFKAQHGVPTTPQVFIDGQRVGGYDDLRRFLGKPVADPKATTYRPVI
VLFTLTALTAMAASHAVNGTPFTLRAAEWFIAFSMVVLAMMKLQNVESFATMFLNYDL
LAMRWIPYSYIYPYAEGLAGVLMVAGALNWLSVPVAMFIGTVGAVSVFKAVYIDKREL
KCACVGGSSNVPLGFISLTENLMMIAMAVWMAAGSIGLIATHAM"
misc_feature complement(158070..158273)
/locus_tag="SMa0280"
/note="Glutaredoxin and related proteins
[Posttranslational modification, protein turnover,
chaperones]; Region: GrxC; COG0695"
/db_xref="CDD:223767"
misc_feature complement(<157590..157979)
/locus_tag="SMa0280"
/note="Methylamine utilisation protein MauE; Region: MauE;
pfam07291"
/db_xref="CDD:115916"
gene 158400..158804
/locus_tag="SMa0281"
/db_xref="GeneID:1235376"
CDS 158400..158804
/locus_tag="SMa0281"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory protein,
merR family, PF00376; homologous to MerR from Thiobacillus
ferrooxidans (accession S18590)"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="NP_435397.1"
/db_xref="GI:16262604"
/db_xref="GeneID:1235376"
/translation="MVQSQDLQELTIGKLAAAGGVGVETIRFYQRKGLLATPKRLEGV
RRYGGEDVRRLRFIKQAQAAGFTLEEIGQLLALDAGHNRSAARELAKKKLEQLDARIG
ELNRAREALRKLVSECAEDKTGPCPILASFGV"
misc_feature 158427..158795
/locus_tag="SMa0281"
/note="Helix-Turn-Helix DNA binding domain of the MerR1
transcription regulator; Region: HTH_MerR1; cd04783"
/db_xref="CDD:133410"
misc_feature 158430..158792
/locus_tag="SMa0281"
/note="Hg(II)-responsive transcriptional regulator;
Region: MerR; TIGR02051"
/db_xref="CDD:131106"
misc_feature order(158430..158438,158478..158480,158526..158534)
/locus_tag="SMa0281"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133410"
misc_feature order(158568..158570,158577..158579,158589..158594,
158619..158621,158646..158651,158658..158660,
158667..158669,158679..158681,158697..158699,
158709..158711,158718..158723,158742..158744,
158757..158762,158775..158777,158781..158783)
/locus_tag="SMa0281"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133410"
misc_feature order(158646..158648,158751..158753,158775..158777)
/locus_tag="SMa0281"
/note="mercury binding site [ion binding]; other site"
/db_xref="CDD:133410"
gene complement(159165..159389)
/locus_tag="SMa0285"
/db_xref="GeneID:1235377"
CDS complement(159165..159389)
/locus_tag="SMa0285"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435398.2"
/db_xref="GI:193782557"
/db_xref="GeneID:1235377"
/translation="MSASAQLAKMAIEKGHGETSHIVWMKMGGLKDWELKPNILEGDW
TFVTKNSVDFQGPNTSPAPRDNIPKRCSSR"
gene complement(159590..160051)
/locus_tag="SMa0286"
/db_xref="GeneID:1235378"
CDS complement(159590..160051)
/locus_tag="SMa0286"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; ORF also predicted in the
Rhizobium sp. NGR234 sym plasmid sequence - gene y4E0
(accession P55438)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435399.1"
/db_xref="GI:16262606"
/db_xref="GeneID:1235378"
/translation="MSLFCGSGGRRRAVIHLFSRDLAQGKVPAGHTSCQTPSFRSTMA
ATSWRGPVHSSPSILRARAASRPRSDCLPSAPQGPTGNSAHTPLGGPVARGLDGSHEF
LAIDLVPVMRDASERLDLAAAREIVTASPDVLGGTPVIRGTPVPVYDVAAS"
misc_feature complement(<159596..159673)
/locus_tag="SMa0286"
/note="Protein of unknown function (DUF433); Region:
DUF433; cl01030"
/db_xref="CDD:207293"
gene complement(160062..160508)
/locus_tag="SMa0287"
/db_xref="GeneID:1235379"
CDS complement(160062..160508)
/locus_tag="SMa0287"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435400.1"
/db_xref="GI:16262607"
/db_xref="GeneID:1235379"
/translation="MNKGSTKAKRQENSRCENEEPTRKPGTSIAEWIVAGVSCLALLA
VLGYLILDGLSGRNGAADIIVLPAEVTAMNDGYVVEFAANNRAGKSVAAVEIKGELRG
GEEVVEESGVTIDYIPQKSERKGALIFRSDPEGYELRIFASGYSEP"
misc_feature complement(160065..160427)
/locus_tag="SMa0287"
/note="TIGR02588 family protein; Region: TIGR02588"
/db_xref="CDD:131637"
gene complement(160505..161341)
/locus_tag="SMa0288"
/db_xref="GeneID:1235380"
CDS complement(160505..161341)
/locus_tag="SMa0288"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435401.1"
/db_xref="GI:16262608"
/db_xref="GeneID:1235380"
/translation="MTPAEGVVGPTPREFWIGLGRAFAGALIFAVPVLMTMEAWALGF
HLHPLRLALLLVATVPTLVLLHKYGGFRKSVGLRDRIADAFVALLVAAIAASAILFSF
GIVDADMPLREIVGKVAVQIVPGSLGASLARAQLGPSPLEGDAVPEPAYAGELFLMVV
GALFLSVNIAPTEEVVLIAYKMNPWHEIALALGTLGLMHVFVYELEFRGTHNPEPGAG
FVNIFFRYTIVGYCLVMLVNFYILWTFGRTDGVGFSETLSAVVVLSFPGALGAAVARL
IL"
misc_feature complement(160508..161305)
/locus_tag="SMa0288"
/note="putative integral membrane protein TIGR02587;
Region: TIGR02587"
/db_xref="CDD:131636"
gene 161616..161984
/locus_tag="SMa0291"
/db_xref="GeneID:1235381"
CDS 161616..161984
/locus_tag="SMa0291"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435402.1"
/db_xref="GI:16262609"
/db_xref="GeneID:1235381"
/translation="MVLFCSDPHISPETNPENAVSEFISYLFAILVVGPLQAEISERL
RGVPSTEIVQAGRACVAAEAPRLLQRAQEDWGWAAANAVGVSVGLIDPASLLAGQNAD
CDRLVQVLSQSSGGNGDDEA"
gene complement(162273..162668)
/locus_tag="SMa0293"
/db_xref="GeneID:1235383"
CDS complement(162273..162668)
/locus_tag="SMa0293"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435404.4"
/db_xref="GI:193782558"
/db_xref="GeneID:1235383"
/translation="MESVTILLAEDETLLLLDFEDALKEAGFMVLAVTSGKKAVEHLK
AAESSIAGIVTDIRFAESPSGWDVTRIAREIDPEMPVVYISGDSAPDWASQGVPKSIM
IEKPFVMSQMIVAISQLLNDRRAGAAALE"
misc_feature complement(162309..162590)
/locus_tag="SMa0293"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(162351..162356,162414..162416,
162474..162476,162501..162503))
/locus_tag="SMa0293"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(162501..162503)
/locus_tag="SMa0293"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(162474..162479,162483..162485,
162489..162494))
/locus_tag="SMa0293"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(162348..162356)
/locus_tag="SMa0293"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene complement(163041..164855)
/locus_tag="SMa0298"
/db_xref="GeneID:1235384"
CDS complement(163041..164855)
/locus_tag="SMa0298"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; N-terminal half of ORF is
similar to ABC transporter family, PF00005; start codon
changed based on homology and location of S-D consensus."
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435405.1"
/db_xref="GI:16262612"
/db_xref="GeneID:1235384"
/translation="MKNLIEVRNLNIAYGGPSGWTNVVQDVSFEIAPGEAFGLVGESG
CGKSTVAYRLLGYGTINSLVQTGEVLFDGTDLLKLDAASLMRLRGNRIAFVPQNPTTS
LSPGMRVGSQICEMIATHKALPDGMTMERRIVELFTLVGLPDVGHRYPHELSGGQQQR
VTIAMAVACNPDLLVLDEPTTGLDVTTQRQIIQLLADLRSRIGMAMLYVTHDLALLAQ
IADRVGVMYAGQLVEVAPCDKLLSAPAHPYSRGLIASIPTNDGTDRQARSLRGMLRRD
EMSTGCKFEPRCDFATGACRATPQLLELIEDARSVACMRWREATAPLAPSVTAKAVAR
TAVRSESLLSVTELSLSYQQPGLFNRLLGRTSPAVVREINLNLAAGEVVALVGGSGSG
KSTIARAISARLPPRAGIIRLDGTALAPSLKDRSVEELRQIQYIFQNPDASLNPRGLR
LFERTQELDDPCLYRNVERREDLVADQKLRIDEKCAGCYSKPPLDSKRTITSHARPPF
RGRRPYRASAVPSPAAVRARSAIHAPKTGHPSRSRLPASSAAISLPKHWYATPPRQIT
TARRSRSDQCRDLARDRAQASRRSALRRSAADRTANSC"
misc_feature complement(163908..164846)
/locus_tag="SMa0298"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:30793"
misc_feature complement(164151..164846)
/locus_tag="SMa0298"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(164712..164735)
/locus_tag="SMa0298"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(164223..164225,164322..164327,
164565..164567,164709..164717,164721..164726))
/locus_tag="SMa0298"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(164565..164576)
/locus_tag="SMa0298"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(164370..164399)
/locus_tag="SMa0298"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(164322..164339)
/locus_tag="SMa0298"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(164304..164315)
/locus_tag="SMa0298"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(164217..164237)
/locus_tag="SMa0298"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(163971..164162)
/locus_tag="SMa0298"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
misc_feature complement(<163515..163769)
/locus_tag="SMa0298"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(163674..163697)
/locus_tag="SMa0298"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(163542..163544,163671..163679,
163683..163688))
/locus_tag="SMa0298"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(163542..163553)
/locus_tag="SMa0298"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
gene complement(164858..165745)
/locus_tag="SMa0299"
/db_xref="GeneID:1235385"
CDS complement(164858..165745)
/locus_tag="SMa0299"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435406.1"
/db_xref="GI:16262613"
/db_xref="GeneID:1235385"
/translation="MSVITTIPARRFSRFNAERWRATPGPFKVGAVILVAHALFAILG
VFWTPYGFAEMGAGLPLSGASWQHPMGLDQIGRDVFSRFMHGAHIVLMLSFAGTMLGM
VAGTTLGLLSGYIGGWFDEVTQRIVEAMISIPFLALALVMIIAAGPALAGKPVLIVFV
VGLVYAPRIVRIARAAAMDIATREYVAVAELRGEGTWSIVFREILPNAANVLLVEFSL
RLSYAPILIGALGFLGFGIRPPTPEWGLMISENRNLLIASPVTVFGPGLGLASLVIGF
NLFTDGLSRMLGQRPVAGA"
misc_feature complement(164876..165736)
/locus_tag="SMa0299"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:224094"
misc_feature complement(<165077..165475)
/locus_tag="SMa0299"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(165092..165094,165101..165106,
165146..165148,165197..165199,165206..165211,
165221..165223,165227..165232,165239..165241,
165245..165247,165251..165256,165317..165319,
165323..165328,165335..165364,165368..165379,
165407..165409,165422..165427,165434..165439))
/locus_tag="SMa0299"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(165317..165361)
/locus_tag="SMa0299"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(165125..165127,165137..165142,
165158..165196))
/locus_tag="SMa0299"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(165742..166695)
/locus_tag="SMa0300"
/db_xref="GeneID:1235386"
CDS complement(165742..166695)
/locus_tag="SMa0300"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; similar to genes in
Agrobacterium tumefaciens (ophB, S77573; accD, BAA87748;
agaB, AAB88467) that are present on the Ti plasmid"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435407.1"
/db_xref="GI:16262614"
/db_xref="GeneID:1235386"
/translation="MSVLRLLASRILFSVLTLLLVSVLIFLILEALPGDVATRILGRD
ATAKALELLRSQLDLDQPALVRYFQWLGDFLRGDLGVSIATGRPITDVLGPRIVNTLL
LSLFAFAIYLVLALVPAIIQATNRGKAVDNIISVITLVLLSLPDFLLATILLFLFAVA
VPILPALATISEASTWQETLRAMVLPAVTLAIMMAVYAIRVLRDSLIEVLRSDYVRLA
ELKGLRPTAVLFRHALPNAIVPALNVTALNFGFLIGGVVIVERVFSYPGFGTLLIDAL
QLRDIPLIKATVMISAVVYVAANLVADVLAVLLQPRLRTSR"
misc_feature complement(165745..166608)
/locus_tag="SMa0300"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:223674"
misc_feature complement(165826..>166209)
/locus_tag="SMa0300"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(165919..165936,166192..166209))
/locus_tag="SMa0300"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(165829..165834,165838..165843,
165850..165855,165883..165888,165913..165918,
165925..165936,165955..165957,165964..165969,
166009..166011,166060..166062,166069..166074,
166084..166086,166090..166095,166102..166104,
166108..166110,166114..166119,166192..166194,
166198..166203))
/locus_tag="SMa0300"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(165853..165855,165883..165885,
165892..165894,165916..165918,166132..166134,
166192..166194))
/locus_tag="SMa0300"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(165988..165990,166000..166005,
166021..166059))
/locus_tag="SMa0300"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(166692..167360)
/locus_tag="SMa0301"
/db_xref="GeneID:1235387"
CDS complement(166692..167360)
/locus_tag="SMa0301"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435408.1"
/db_xref="GI:16262615"
/db_xref="GeneID:1235387"
/translation="MTVFALTTFLNSFADALDRDARTVSRSHAARLRRLADQLPPMND
VPQGRVPIQAACEAELAAHDQSAIARALATLLPFVHITRSKSYLANPPSSDFGENYGY
GVICGPSSGPPALIKDPDIALGLMFLGPKTHYPLHHHPADELYYTVTGPSFWRAGEAD
WTRRGIDEIIHHPPWLPHATLSAEGPLVLLYIWEGDLETDAAFIPDTVTADAALSSMG
LDAT"
misc_feature complement(166782..166991)
/locus_tag="SMa0301"
/note="Cupin domain; Region: Cupin_2; cl17218"
/db_xref="CDD:247772"
gene complement(167430..168956)
/locus_tag="SMa0302"
/db_xref="GeneID:1235388"
CDS complement(167430..168956)
/locus_tag="SMa0302"
/note="glimmer prediction; bacterial extracellular
solute-binding protein, family 5, PF00496; similar to S.
meliloti ORF23 (CAB01955)"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435409.1"
/db_xref="GI:16262616"
/db_xref="GeneID:1235388"
/translation="MKRHLLKGTALAVTMAACSFGATVAFAQEGCVRVLGYESDGEKQ
TMDPAALIGTDSVYHIRAVYEPLVDRSNTMQPVPALAESWESNADATEWTFHLRKGVK
FHDGSDFDAKDVVYSYRRLLDPAVSPGGFSTLAFLDADGITAIDDHTVRFKVKEPVVE
LPMLIATKYALMVPEGAKSEDLRVKGNGTGPFMQETFTINGAVRVMRRNPTYWRAGLP
KSECLEITTSLEPTSRLSALLSGTVDLSLTVDPASLITLKDNPAVELAATPGATSLYI
AVWTDTPPFDSVKVREAMKLVMDRQKILDTVLLGYGEVGADTPIPPSSPFGLGTPAKT
ADIEKATALLAEAGHPDGIDFDLYTSDSYPGMMLLAQVYAQMAAPAGIRVNVITSPAE
GYWDTIWLKKPAVISYTSARPPAEALTLSLNSKSEWNETHWTRDDFDALVVKAGQTAD
EKQRNDLYRDAQRIVADEGGMILPVFSSVVAGLRKGCSGYEPNVDVNRIDYAELTCAD
"
misc_feature complement(167472..168956)
/locus_tag="SMa0302"
/note="ABC-type dipeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
DdpA; COG0747"
/db_xref="CDD:223818"
misc_feature complement(167487..168878)
/locus_tag="SMa0302"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_17; cd08503"
/db_xref="CDD:173868"
gene 169064..169942
/locus_tag="SMa0303"
/db_xref="GeneID:1235389"
CDS 169064..169942
/locus_tag="SMa0303"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435410.1"
/db_xref="GI:16262617"
/db_xref="GeneID:1235389"
/translation="MVRRNLPPLTTLRAFEAAARLMSFKAAAEELRVTQSAVSHQVAS
LERNLGTPLFVRLPGRVELSQEGTVYFPVVQDALDKIALTTDLIRKTNTSASLTVQVY
VTVAVRWLIPRLQAFKEASPEIAVNLDASLLDWEFNPDRADVGFIYTRAPNRPNLTYT
LLRRERLVGVCSPAIARAIKTAEDLRHFSFLSVSGTTDDAETWAASVGVAGLSQKSSP
LFDSNLLAIEAAANGQGVVVVPQFLVEGDIANGNLVAPLASDVMQPGGWYLVHLQRRG
NEKAIRKFLQWIQSQT"
misc_feature 169064..169936
/locus_tag="SMa0303"
/note="DNA-binding transcriptional activator GcvA;
Provisional; Region: PRK11139"
/db_xref="CDD:182990"
misc_feature 169088..169264
/locus_tag="SMa0303"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 169352..169927
/locus_tag="SMa0303"
/note="The C-terminal substrate domain of LysR-type GcdR,
TrPI, HvR and beta-lactamase regulators, and that of other
closely related homologs; contains the type 2 periplasmic
binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like;
cd08432"
/db_xref="CDD:176123"
misc_feature order(169352..169372,169376..169429,169433..169453)
/locus_tag="SMa0303"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176123"
misc_feature order(169367..169372,169376..169378,169724..169732,
169790..169792)
/locus_tag="SMa0303"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:176123"
gene complement(170035..171675)
/locus_tag="SMa0306"
/db_xref="GeneID:1235390"
CDS complement(170035..171675)
/locus_tag="SMa0306"
/EC_number="4.3.1.3"
/function="Small molecule metabolism; Amino acid
biosynthesis; histidine"
/note="glimmer prediction; phenylalanine and histidine
ammonia-lyase, PF00221"
/codon_start=1
/transl_table=11
/product="histidine ammonia-lyase"
/protein_id="NP_435411.1"
/db_xref="GI:16262618"
/db_xref="GeneID:1235390"
/translation="MRIDSLFHSVVGACLLFSSPVMADVLLNGRNATPEMIVRVAKGE
AVTVDGESLDKVERAYAVLLQGAKEGQEIYGLTVGVGWNKDRKMVDATGELTPELMEA
SREFNEGLLRAHSVGVGPDAAVPVVRAAMAVRLNNILTGGPGVQPHVAEMLLAFLNKG
ITPTMPSRGSVGQADMTLLSHIGLAMLGEGDVDYQGRRMSAAEALKAAGIEPLKPFGK
DGLAILSSNAYAAGLAALAIHDAEQLLSTSRLVYALSLEGLNGNVSPLLEDVAALRPF
PSHLSSTTELRALLEGSYLWQADDKRILQDPLSFRTAPYLLGSFADSLARTKALVQIQ
INSSDDNPGIVVGVEPKSDLFQARRGYVEGGAVLPTANFEPLPWIIAFEELGIVLAHH
TTASSERVLKLNNPTHTKLARYLGTENTHHAFLVVEAPLMALATENRALAQPTSFDSR
PIAGGVEDVGTNAPLVVERIRAQIDNSFTILSMEMLHAAQAADLRLKGHPERKLSTAT
TSFHDAFRQRVPFLDRDRSMTPDIAAGTAFLKEYALTN"
misc_feature complement(170191..171588)
/locus_tag="SMa0306"
/note="Phenylalanine ammonia-lyase (PAL) and histidine
ammonia-lyase (HAL); Region: PAL-HAL; cd00332"
/db_xref="CDD:176460"
misc_feature complement(order(170569..170571,170653..170655,
170743..170745,170752..170754,171001..171003,
171013..171027,171346..171348,171355..171357,
171436..171438,171442..171444,171448..171456))
/locus_tag="SMa0306"
/note="active sites [active]"
/db_xref="CDD:176460"
misc_feature complement(order(170248..170253,170260..170262,
170269..170274,170290..170292,170299..170319,
170350..170361,170365..170382,170386..170388,
170392..170403,170407..170412,170416..170421,
170452..170454,170461..170463,170470..170472,
170482..170484,170494..170496,170503..170505,
170524..170526,170536..170538,170545..170550,
170554..170574,170578..170580,170641..170649,
170662..170667,170674..170679,170686..170691,
170698..170700,170707..170712,170728..170733,
170740..170745,170749..170757,170761..170763,
170839..170841,170848..170850,170854..170859,
170866..170871,171124..171126,171133..171135,
171169..171174,171256..171258,171319..171342,
171349..171351,171436..171441))
/locus_tag="SMa0306"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176460"
STS 170629..171274
/standard_name="D10Bir17"
/db_xref="UniSTS:141482"
gene complement(172016..173002)
/locus_tag="SMa0307"
/db_xref="GeneID:1235391"
CDS complement(172016..173002)
/locus_tag="SMa0307"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; N-terminus contains bacterial
reg"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435412.1"
/db_xref="GI:16262619"
/db_xref="GeneID:1235391"
/translation="MSRSAIKSISIMQVIDHFNLRSFDLNLLVAFDAMMEEMSVTRAA
QRLKIQQPAMSHNISTLRTLFQDELFIRVGQVMKPTARALNLSGPVRQALRQAQAAVL
MADVFDPATEQRTFRLGLSSEVELLLLPDLTARLRDIAPGIRILARGGDAAEVDAMLD
AGVIDLSVGCSYLPDSRHHCEPLYQSSVLCCFNPQLLEISNPVSLDAYMAAQHAVISQ
TDSLHGCVKDALEHAGAELEVVAAAPDFMSILATARSSAVIATVSSRIAARYGPLLGL
QVSPVPLALSFPPVAMVWPLHMDSDLGCAWLRQQIREAMLRTTETNVADIAA"
misc_feature complement(172070..172948)
/locus_tag="SMa0307"
/note="leucine transcriptional activator; Reviewed;
Region: leuO; PRK09508"
/db_xref="CDD:181918"
misc_feature complement(172754..172930)
/locus_tag="SMa0307"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(172061..172588)
/locus_tag="SMa0307"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
similar to DntR, which is involved in the catabolism of
dinitrotoluene; contains the type 2 periplasmic binding
fold; Region: PBP2_DntR_like_2; cd08464"
/db_xref="CDD:176153"
misc_feature complement(order(172196..172198,172238..172240,
172247..172252,172259..172264,172271..172285,
172367..172369,172556..172558,172562..172576,
172580..172585))
/locus_tag="SMa0307"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176153"
gene 173063..174022
/locus_tag="SMa0308"
/db_xref="GeneID:1235392"
CDS 173063..174022
/locus_tag="SMa0308"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435413.1"
/db_xref="GI:16262620"
/db_xref="GeneID:1235392"
/translation="MPSRRSILKSALTGLIVAPFVAPSVTFAKAPFAVVQAPGYYRLK
IGSVEVTALSDGTVALPLAKLYTNTSEHDAQNALKDAFLPDMVPTSVNAFLVNTGERL
VLIDAGTGGYLGASLGKLVSNIEASGYKVGDIDDVILTHIHTDHSGGLMSNGKRTFPN
ATLRVNEREAKFWLSSANAMTATGTVKQHFGEADQCVTPYVKAGKFETFADNAAPVPG
LGSILYAGHTPGHSAITLESESQKIVFWGDITHGDILQFDEPGVAIEFDIDQKAAVAA
RNTAFKQAVEGKYLVAGAHIAFPGIGHVREDSKNYDWLPINYA"
misc_feature 173336..173947
/locus_tag="SMa0308"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:214854"
gene complement(174273..175004)
/locus_tag="SMa0310"
/db_xref="GeneID:1235393"
CDS complement(174273..175004)
/locus_tag="SMa0310"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435414.1"
/db_xref="GI:16262621"
/db_xref="GeneID:1235393"
/translation="MRLTEAGNRLHETLSQPMAEVRSAFENVAGDARPSGLLRIAVTS
IAEQFLSGPLIASFAETHPGITIDVTVTDDVFDIVAAGFDAGVRLGEVIEQDMVAVPL
TKEEREVVVATPRYFELHGTPRHPRELVRHRCVGWRPSPSAAPYRWEFEEDGIPFDVA
VEPQITTNDLHLMIRTALAGGGITFALEETFRPYIVRGELITALDDYLPPFPGFFLYF
PNRRNMAPKLRALIDHVRAYRPTPS"
misc_feature complement(174291..175004)
/locus_tag="SMa0310"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(174300..174905)
/locus_tag="SMa0310"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_5; cd08474"
/db_xref="CDD:176163"
misc_feature complement(order(174363..174365,174444..174446,
174495..174497,174687..174689,174696..174698,
174738..174740,174855..174857,174867..174869))
/locus_tag="SMa0310"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176163"
misc_feature complement(order(174468..174470,174477..174482,
174501..174515,174606..174608,174792..174812,
174816..174818,174828..174830,174837..174842,
174846..174851,174861..174866))
/locus_tag="SMa0310"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176163"
gene 175343..175876
/locus_tag="SMa0312"
/db_xref="GeneID:1235394"
CDS 175343..175876
/locus_tag="SMa0312"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435415.1"
/db_xref="GI:16262622"
/db_xref="GeneID:1235394"
/translation="MAFGICAAPVAAQDSSCPREGADAPLALHADWIMKGWERHEGDG
KFEFSQKLNRYYDLENTKGVFYDNFAPGSTQLFDNSARYGANWEALQNAARSVRHGLT
GGHDVIVSDTVASTTLGFVGRIDRLDGAVVAFDGRSQLGWTCTGGEWKIRHELNYAWV
VEPETIQSFLGKTEPAQ"
gene 175873..176124
/locus_tag="SMa0314"
/db_xref="GeneID:1235395"
CDS 175873..176124
/locus_tag="SMa0314"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435416.1"
/db_xref="GI:16262623"
/db_xref="GeneID:1235395"
/translation="MTSQTLSHPYVGMWETTDGRIRHQLLPNGRYDEARGSRESAYRG
RYEVSGNHIEYWDDTGFTADGDFVDDVLHHAGMVLYRKQ"
misc_feature 175894..176118
/locus_tag="SMa0314"
/note="Agrobacterium tumefaciens protein Atu4866; Region:
Atu4866; pfam11512"
/db_xref="CDD:151949"
gene 176207..177469
/locus_tag="SMa0316"
/db_xref="GeneID:1235396"
CDS 176207..177469
/locus_tag="SMa0316"
/function="Miscellaneous; Hypothetical/Partial homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435417.1"
/db_xref="GI:16262624"
/db_xref="GeneID:1235396"
/translation="MTMTHIEQQLENLASPGDRQKHLRGLAVLKQIGGENFGGPVSQL
ASFSEDLARFTIQYPYGDVLSRDGLDLRTRQILTAATLLAHGSAQSQLSFHLYGLLNA
GGTRADVVDLLFISAGLLGFPTAINAVPIVRDILADRDETKNVAGAQTSPAVPDMPSD
RFAVLDRIAPDFVNWREHTLGEEIFGAVHLEPRLAHLASAAMLAARGKVGASFDAHIV
SALAAGATDSDIVEMVIQLSVYSGFPAALNAAGRARNVLAAPERPQASTQKGVDTTKD
DEKRFMRGVATLAETSGGSGADVVDSFKDVAPGLGRLIVAHCYGDIFCRPALDPKVRE
LGAISALAAQGTVAAEKPLGVHIDAALNLGATPEEIVETLFNIIPYAGYPLIEKALLI
AHDRISLFDEKQVDGSPSDHRTLDMCSG"
misc_feature 176261..176626
/locus_tag="SMa0316"
/note="Carboxymuconolactone decarboxylase family; Region:
CMD; cl00460"
/db_xref="CDD:241878"
misc_feature 176684..176983
/locus_tag="SMa0316"
/note="Uncharacterized homolog of
gamma-carboxymuconolactone decarboxylase subunit [Function
unknown]; Region: COG0599"
/db_xref="CDD:223672"
misc_feature 177098..177418
/locus_tag="SMa0316"
/note="Uncharacterized homolog of
gamma-carboxymuconolactone decarboxylase subunit [Function
unknown]; Region: COG0599"
/db_xref="CDD:223672"
gene 177973..178974
/locus_tag="SMa0319"
/db_xref="GeneID:1235397"
CDS 177973..178974
/locus_tag="SMa0319"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, AraC family, PF00165"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="NP_435418.1"
/db_xref="GI:16262625"
/db_xref="GeneID:1235397"
/translation="MANIEASRQNVSPPIPAVAGNPIYPAVLVPELNEVIARPDRTSP
LGLEQYIAGRTLVSGDTPAWSDMFVQVYSRLNKQEPFLVPAVAEPLIVWVMSGEAVVE
ERDLDGDWVANTVTVGDFFLTRSPTPYEMRWRSVDAAPFQVMHLYLSVPLFERVAYDV
LGCAAPPALRDISGGRDTQLSHLLALVHQELTAEGKGSQLFIQGLAQSLAVHLIRNYA
ANEADDRQNALTGFKLRRAVAHLEEHLAEPFNLAQLAETVGMSEFHFSRLFKKATGLS
PSRYFIRQRVARAQLLLQETDTSIIEIGMSVGYSSPSHFAQVFRRETGLPPSHYRRG"
misc_feature 178213..178629
/locus_tag="SMa0319"
/note="Cupin; Region: Cupin_6; pfam12852"
/db_xref="CDD:221809"
misc_feature 178609..178968
/locus_tag="SMa0319"
/note="AraC-type DNA-binding domain-containing proteins
[Transcription]; Region: AraC; COG2207"
/db_xref="CDD:225117"
misc_feature 178693..178812
/locus_tag="SMa0319"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
misc_feature 178855..178968
/locus_tag="SMa0319"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
gene 179119..179868
/locus_tag="SMa0320"
/db_xref="GeneID:1235398"
CDS 179119..179868
/locus_tag="SMa0320"
/note="glimmer prediction; short chain motif, PF00106"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435419.1"
/db_xref="GI:16262626"
/db_xref="GeneID:1235398"
/translation="MTSLNGKIALVTGASSGIGAATAAKLAEAGAKVGIAARRTDKLE
DLKKKIEAKGGEALVIEMDVVDTTSVEAGVKKLVDAYGSIDILVNNAGLMPLSDIDQF
KVDEWQRMVDVNVKGLLNTTAAVLPQMIKQHSGHVFNMSSIAGRKVFKGLSVYCATKH
AVTAFSDGLRMEVGQKHGIRVTCIQPGAVATELYDHITDPGYRQQMDELATQMTFLQG
EDIGDTIVFAAQAPAHVDVAELFVLPVEQGW"
misc_feature 179119..179865
/locus_tag="SMa0320"
/note="Short-chain alcohol dehydrogenase of unknown
specificity [General function prediction only]; Region:
COG4221"
/db_xref="CDD:226674"
misc_feature 179128..179859
/locus_tag="SMa0320"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature order(179155..179157,179161..179166,179170..179172,
179227..179235,179386..179394,179536..179544,
179581..179583,179593..179595,179674..179685)
/locus_tag="SMa0320"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(179458..179460,179542..179544,179581..179583,
179593..179595)
/locus_tag="SMa0320"
/note="active site"
/db_xref="CDD:187535"
gene 179926..180474
/locus_tag="SMa0322"
/db_xref="GeneID:1235399"
CDS 179926..180474
/locus_tag="SMa0322"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435420.1"
/db_xref="GI:16262627"
/db_xref="GeneID:1235399"
/translation="MKELPASQAYRVLEPGPIVMVSTSDNGKPNVMTMGFHTMIQHDP
PLIGCVIGPWDHSYQALRKTGECVIAVPGLDLAETVVDVGNCSGDRVDKLQRYGLMTQ
PARDVSAPLLRDCLANIECRVVDTRLLDPYNLFILEATRIWINENRKERRMMHHRGDG
TFTVDGGTLDLKDRMVRWRHLP"
misc_feature 179968..180429
/locus_tag="SMa0322"
/note="Conserved protein/domain typically associated with
flavoprotein oxygenases, DIM6/NTAB family [General
function prediction only]; Region: COG1853"
/db_xref="CDD:224766"
gene 180525..180809
/locus_tag="SMa0323"
/db_xref="GeneID:1235400"
CDS 180525..180809
/locus_tag="SMa0323"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; similar to Smc00411 of S.
meliloti chromosome"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435421.1"
/db_xref="GI:16262628"
/db_xref="GeneID:1235400"
/translation="MSAYLIVDLDIHDMKSIEDYRSKALPLVAKAGGKLIAIDESPLE
LEGWIATNMLIIEFPDKDAIRQLFASPEYAPLAAQRQAAAASRIIAINGV"
misc_feature 180525..180752
/locus_tag="SMa0323"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5470"
/db_xref="CDD:227757"
gene 180910..181212
/locus_tag="SMa0325"
/db_xref="GeneID:1235401"
CDS 180910..181212
/locus_tag="SMa0325"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435422.1"
/db_xref="GI:16262629"
/db_xref="GeneID:1235401"
/translation="MADLTNVAYFTAKPGRSGELGDELLQLVTPSRNEEGCLRYEIHQ
SNDVPDVWMVLEDWRHASDFKLHMNTPYVQAFMAKVPDLCVEDVEICGYQQRSPQV"
misc_feature 180910..181209
/locus_tag="SMa0325"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1359"
/db_xref="CDD:224278"
gene 181233..182072
/locus_tag="SMa0326"
/db_xref="GeneID:1235402"
CDS 181233..182072
/locus_tag="SMa0326"
/note="glimmer prediction; short chain motif, PF00106"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435423.1"
/db_xref="GI:16262630"
/db_xref="GeneID:1235402"
/translation="MSTQNPKVWLVTGCSTGFGRYIAEHLLEVGEKVVVTARKADKIA
DLEQKGDALILPLDVIDRDQCQKVVDAAEAHFGRIDVLINNAGIGFFGAIEETDESNA
RRLFDVNFFGTANTIHSVLPHMRARRSGTIVNLTSIGGLVGYTGVGYYCATKFAVEGL
SDTLRNEVAPLGINVMTVEPSAFRTEWAGSSNEVSASIEDYEATAGEARRAYHTSVGK
QAGDPARAAKAIREAVLAQQPPHHLPLGNDAADAALKKAEDLKANVLAWEALSRSADF
PAN"
misc_feature 181245..182060
/locus_tag="SMa0326"
/note="short chain dehydrogenase; Provisional; Region:
PRK06180"
/db_xref="CDD:180446"
misc_feature 181251..181970
/locus_tag="SMa0326"
/note="17beta hydroxysteroid dehydrogenase-like, classical
(c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374"
/db_xref="CDD:187632"
misc_feature order(181269..181271,181275..181286,181344..181346,
181401..181409,181485..181496,181554..181556,
181635..181643,181680..181682,181692..181694,
181779..181781,181785..181793)
/locus_tag="SMa0326"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187632"
misc_feature order(181557..181559,181641..181643,181680..181682,
181692..181694)
/locus_tag="SMa0326"
/note="active site"
/db_xref="CDD:187632"
misc_feature order(181641..181649,181662..181664,181680..181682,
181773..181778,181794..181796,181833..181835,
181842..181844)
/locus_tag="SMa0326"
/note="steroid binding site; other site"
/db_xref="CDD:187632"
gene 182145..182906
/locus_tag="SMa0329"
/db_xref="GeneID:1235403"
CDS 182145..182906
/locus_tag="SMa0329"
/note="glimmer prediction; N-terminus motif - short chain
dehydrogenase, PF00106; C-terminus motif - short chain
dehydrogenase/reductase C-terminus, PF00678"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435424.1"
/db_xref="GI:16262631"
/db_xref="GeneID:1235403"
/translation="MSKRFDGKVAIVTGGGSGIGAAIANRLLEEGASVMMSGRTEKRL
SDVASKMPADRSGIFVANVSSRPDCDALVAATVERFGRIDTVVNAAGMNFVGTIQETS
DQDWDECIASDLSGVFYMSRAAVPHLKETKGSIVNIGSVSSLGGGWSHAAYNAAKGGV
ANLTRSAACDLGKFGVRANTVAPGLTVTGMVEAIMDDDALLEKAWDRIPLRRAGQPAS
AVAFLASDEAAWITGIVLPVDGGQTCTDGGPEWGK"
misc_feature 182151..182879
/locus_tag="SMa0329"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional; Region: fabG; PRK07231"
/db_xref="CDD:235975"
misc_feature 182220..182861
/locus_tag="SMa0329"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(182256..182264,182325..182333,182409..182417,
182478..182480,182556..182564,182601..182603,
182613..182615,182691..182702,182706..182711)
/locus_tag="SMa0329"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(182481..182483,182562..182564,182601..182603,
182613..182615)
/locus_tag="SMa0329"
/note="active site"
/db_xref="CDD:212491"
gene complement(182962..183186)
/locus_tag="SMa5017"
/db_xref="GeneID:6435255"
CDS complement(182962..183186)
/locus_tag="SMa5017"
/note="Predicted membrane protein; Has similarity to the
carboxy-terminal half of DoxX family proteins; Together
with the adjacent gene, SMa0333, may comprise a
pseudogene"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000333.1"
/db_xref="GI:193782559"
/db_xref="GeneID:6435255"
/translation="MTEIVGSIALILGFQTRIVALILALFSVATALTFHNNLSDLNQF
IHFFKNIAMAGGLLQVVAFGAGRYSLDARR"
misc_feature complement(182965..>183183)
/locus_tag="SMa5017"
/note="Predicted membrane protein [Function unknown];
Region: COG2259"
/db_xref="CDD:225168"
gene complement(183183..183395)
/locus_tag="SMa0333"
/db_xref="GeneID:1235404"
CDS complement(183183..183395)
/locus_tag="SMa0333"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435425.1"
/db_xref="GI:16262632"
/db_xref="GeneID:1235404"
/translation="MSYSDTIAQRVETLSHSALINGVAPLAGRVLLAAIFLLSGISKI
SDPAGTIGYINMVGLPFPPLSYGAPY"
misc_feature complement(<183204..183326)
/locus_tag="SMa0333"
/note="DoxX; Region: DoxX; pfam07681"
/db_xref="CDD:219511"
gene complement(183576..184352)
/gene="fabG"
/locus_tag="SMa0335"
/db_xref="GeneID:1235405"
CDS complement(183576..184352)
/gene="fabG"
/locus_tag="SMa0335"
/note="Catalyzes the first of the two reduction steps in
the elongation cycle of fatty acid synthesis"
/codon_start=1
/transl_table=11
/product="3-ketoacyl-ACP reductase"
/protein_id="NP_435426.1"
/db_xref="GI:16262633"
/db_xref="GeneID:1235405"
/translation="MSTSNILDGKVVIVTGASSGIGRAIAIRAAEHGAKAVIVSDVVE
APREGGEPTASEIRKLGAESVFVKADVSRKVDNDALVAAAEEFGGVDVMVANAGITLK
TDGAEVPEDDYRRLMSVNLDGPLFGAQAAARQMKALNKQGSIVLMASMGGISGAGITV
AYSTSKGGVVLMAKSLADALGPDGIRVNAVAPGTIDTELLRTSPGIAQASEGFRQRTP
LRRLGKPAEVGDAVAFLGSDLSSYVSGTALLVDGGLLAVI"
misc_feature complement(183582..184334)
/gene="fabG"
/locus_tag="SMa0335"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional; Region: fabG; PRK07231"
/db_xref="CDD:235975"
misc_feature complement(183591..184334)
/gene="fabG"
/locus_tag="SMa0335"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature complement(order(183768..183779,183855..183857,
183867..183869,183906..183914,184059..184067,
184233..184238,184290..184292,184296..184301,
184305..184307))
/gene="fabG"
/locus_tag="SMa0335"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(183855..183857,183867..183869,
183906..183908,183993..183995))
/gene="fabG"
/locus_tag="SMa0335"
/note="active site"
/db_xref="CDD:187535"
gene complement(184339..184821)
/locus_tag="SMa0337"
/db_xref="GeneID:1235406"
CDS complement(184339..184821)
/locus_tag="SMa0337"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435427.1"
/db_xref="GI:16262634"
/db_xref="GeneID:1235406"
/translation="MSDHHEASYEALKAVVRRNTLEVQSGGNFELFDELFADDFLDHT
PQPGGTPDKEGARRLYHALREAFPDFHAEIHWQAVDGDIVTTFKTYHGTHQGVVLGSR
QRAARSSSKPSTPCAFATARSSNTGGSPTSTIFCSNSTRCPPRPPKCRNIKDHHDEHQ
"
misc_feature complement(<184522..184782)
/locus_tag="SMa0337"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:245009"
gene complement(184847..185620)
/locus_tag="SMa0339"
/db_xref="GeneID:1235407"
CDS complement(184847..185620)
/locus_tag="SMa0339"
/note="glimmer prediction; N-terminus motif - short chain
de"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435428.1"
/db_xref="GI:16262635"
/db_xref="GeneID:1235407"
/translation="MSSLFSNKVVTVTGAGSGIGRAIALGLARDGATVHLADRDADGL
TQTAELIRAEDGRAFTTELDVASELQVVGWIEQIGSTSGRLDAAFNNAGITGPAKRIE
DYPLEDFQRVIAVNLQSVFLGMKYQIPLIKRNGGGSIVNTASIAALTGPGGMSAYAAS
KHGVQGLTRVVAMENAAHGIRVNAIAPGWTETPMVAANSQQNPAFAALAQNAIPAKRG
GKPEEIAAAAIWLASDAASYVTGHMLTVDGGMTIGGFEL"
misc_feature complement(184871..185614)
/locus_tag="SMa0339"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:235546"
misc_feature complement(184880..185587)
/locus_tag="SMa0339"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature complement(order(185042..185047,185051..185062,
185138..185140,185150..185152,185189..185197,
185276..185278,185342..185350,185426..185434,
185501..185509,185564..185575,185579..185581))
/locus_tag="SMa0339"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature complement(order(185138..185140,185150..185152,
185189..185191,185273..185275))
/locus_tag="SMa0339"
/note="active site"
/db_xref="CDD:212491"
gene complement(185692..186300)
/gene="wrbA2"
/locus_tag="SMa0340"
/db_xref="GeneID:1235408"
CDS complement(185692..186300)
/gene="wrbA2"
/locus_tag="SMa0340"
/function="Miscellaneous; Not classified regulator"
/note="stationary phase that binds TrpR repressor"
/codon_start=1
/transl_table=11
/product="TrpR binding protein WrbA"
/protein_id="NP_435429.1"
/db_xref="GI:16262636"
/db_xref="GeneID:1235408"
/translation="MTRVLVLYYSSYGHIETMAGAVAEGARSTGAEVTIKRVPETVPI
EVADKAHFKLNQAAPVATVAELADYDAIIVGTGTRFGRMSSQMAVFLDQAGGLWARGA
LNGKVGGAFVSTGTQHGGQETTLFSIITNLMHFGMVIVGLPYSHQGQMSVDEIVGGAP
YGATTVAGGDGSRQPSQIDLAGAFHQGEIVARTAAALVAARN"
misc_feature complement(185737..186300)
/gene="wrbA2"
/locus_tag="SMa0340"
/note="NAD(P)H:quinone oxidoreductase; Provisional;
Region: PRK03767"
/db_xref="CDD:179647"
misc_feature complement(185869..186297)
/gene="wrbA2"
/locus_tag="SMa0340"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
pfam03358"
/db_xref="CDD:217511"
gene 186524..186718
/locus_tag="SMa0341"
/db_xref="GeneID:1235409"
CDS 186524..186718
/locus_tag="SMa0341"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435430.1"
/db_xref="GI:16262637"
/db_xref="GeneID:1235409"
/translation="MAKGLLGGGEMKFYPQDALTQAGGRFSQSDAPFSAHVVTDRELI
TGQNPASAPAVAQELLKRLK"
misc_feature <186524..186715
/locus_tag="SMa0341"
/note="Putative intracellular protease/amidase [General
function prediction only]; Region: ThiJ; COG0693"
/db_xref="CDD:223765"
misc_feature <186545..186712
/locus_tag="SMa0341"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain; Region: GAT_1; cl00020"
/db_xref="CDD:241555"
gene complement(186903..187337)
/locus_tag="SMa0343"
/db_xref="GeneID:1235410"
CDS complement(186903..187337)
/locus_tag="SMa0343"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435431.1"
/db_xref="GI:16262638"
/db_xref="GeneID:1235410"
/translation="MEKTPDTFVDLGRGTPAWFTFAARILPVGILGQLLSAGLALFRD
SSLWGLHAALGGALSFPAVSLVAGALFVSRLRGFGWWAGLTFLLYLLQVILAAGGMPL
LLSFHPVNGAFLLAASLVLLANVERRRSQSLAEDNATAKPGK"
gene complement(187341..187958)
/locus_tag="SMa0346"
/db_xref="GeneID:1235411"
CDS complement(187341..187958)
/locus_tag="SMa0346"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; similar to General stress
protein 14 (P80871) from Bacillus subtilis"
/codon_start=1
/transl_table=11
/product="NAD(P)H dehydrogenase"
/protein_id="NP_435432.1"
/db_xref="GI:16262639"
/db_xref="GeneID:1235411"
/translation="MRRNLLLVATQETTVTKTLILLFHPDLKRSKANAALAGAAAKLD
GVEVADMQAAYPDSMDMFRDGEREARRLLAADRIVLQFPIQWYSTPPLMKAWQDGVLT
RMFYVTYETEGRALEGTPLMLAATAGNVPESYRPGGRNMFTMEALLAPLRATAHRCGL
SCTAPFIIYQADKLEAEELEAAASNYAATLKNWIAGPLVTRQEAV"
misc_feature complement(187374..187910)
/locus_tag="SMa0346"
/note="Putative NADPH-quinone reductase (modulator of drug
activity B) [General function prediction only]; Region:
MdaB; COG2249"
/db_xref="CDD:225158"
gene 188006..188893
/locus_tag="SMa0347"
/db_xref="GeneID:1235412"
CDS 188006..188893
/locus_tag="SMa0347"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; N-terminus - bacterial
regulatory helix-turn-helix protein, LysR family, PF00126;
C-terminus - NodD transcription activator carboxy terminal
region, PF01046; start codon changed based on codon usage
and similarity."
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435433.1"
/db_xref="GI:16262640"
/db_xref="GeneID:1235412"
/translation="MNLRSLDLNLLVVLDALLDEAHVSRAADRLGLSQPAASAALQRC
RHLFRDELLERGRGTMRLTSRAEALRAPLKSLLASMMELIGPPEIPLTEIRQVLRITM
ADYPALFVIAQLQRELQPSAPGIDLVIQSWHGGDAARSALVDGTADLAVSVFTAPDDD
LHREELLTEHYVVVMRAGHPAAEAFDLNAWLSYPHILVSGRGDTTTPLDAELSRFGLS
RRVGLVVPNFQMVPSLLQDSDMIAMLPSRATPSGGSLVSFLPPIPVPGFQLHMAWHRR
RAKDAALQHVARILGALLR"
misc_feature 188063..188890
/locus_tag="SMa0347"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature <188069..188206
/locus_tag="SMa0347"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 188294..188857
/locus_tag="SMa0347"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulators that involved in the
catabolism of nitroaromatic/naphthalene compounds and that
of related regulators; contains the type 2 periplasmic
binding fold; Region: PBP2_Nitroaromatics_like; cd08417"
/db_xref="CDD:176109"
misc_feature order(188312..188314,188318..188323,188333..188335,
188510..188512,188618..188620,188810..188812)
/locus_tag="SMa0347"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:176109"
misc_feature order(188315..188317,188324..188329,188336..188341,
188348..188353,188357..188362,188369..188374,
188378..188392,188396..188398,188585..188587,
188669..188683,188690..188695,188702..188707,
188714..188716)
/locus_tag="SMa0347"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176109"
gene complement(189202..189798)
/locus_tag="SMa0349"
/db_xref="GeneID:1235413"
CDS complement(189202..189798)
/locus_tag="SMa0349"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435434.1"
/db_xref="GI:16262641"
/db_xref="GeneID:1235413"
/translation="MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDR
FGASVKAVELKDALQADVVILAVPYDSIADIVTQVSDWGGQIVVDASNAIDFPAFKPR
DLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHSDANRQV
AELISSLGFAPVDLGTLAASGPIQQFGRPLVALNLLKD"
misc_feature complement(189217..189798)
/locus_tag="SMa0349"
/note="Predicted dinucleotide-binding enzymes [General
function prediction only]; Region: COG2085"
/db_xref="CDD:224996"
misc_feature complement(189523..189759)
/locus_tag="SMa0349"
/note="NADP oxidoreductase coenzyme F420-dependent;
Region: F420_oxidored; pfam03807"
/db_xref="CDD:202773"
misc_feature complement(189205..>189630)
/locus_tag="SMa0349"
/note="NADP oxidoreductase coenzyme F420-dependent;
Region: F420_oxidored; cl17232"
/db_xref="CDD:247786"
gene complement(189834..190730)
/locus_tag="SMa0352"
/db_xref="GeneID:1235414"
CDS complement(189834..190730)
/locus_tag="SMa0352"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; start codon changed based on
codon usage and homology. N-terminus is similar to
Pirin-protein (NP_003653) from humans"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435435.1"
/db_xref="GI:16262642"
/db_xref="GeneID:1235414"
/translation="MSHISTADIEQVILPSSRDLGGFSVRRALPAPMRQMVGPFIFLD
SFGPVRFGEGEGIDTRPHPHIGLSTLTYLLEGELTHRDSERYVQAIRPGEVNVMVAGA
GIVHSERTPEHQRATGGKLAGLQSWIALPKKSEETAPLFQHLDAGSLPTVSGEGIGMK
LLAGNLHGRQSPATVFSDLFAAEVHLEAGARYRIDGEHVERAIFVVAGALEIVGQDGN
FGQDRLLVFKPGSEIVVKATGPARFLAFGGEPLPEKRFIRWNFVATDQERIRHAADLW
RERGFPGVPDDDEFIPLPENFR"
misc_feature complement(189885..190706)
/locus_tag="SMa0352"
/note="Pirin-related protein [General function prediction
only]; Region: COG1741"
/db_xref="CDD:224655"
misc_feature complement(190347..190667)
/locus_tag="SMa0352"
/note="Pirin; Region: Pirin; pfam02678"
/db_xref="CDD:217181"
misc_feature complement(189885..190187)
/locus_tag="SMa0352"
/note="Pirin C-terminal cupin domain; Region: Pirin_C;
pfam05726"
/db_xref="CDD:203319"
gene 190833..191747
/locus_tag="SMa0353"
/db_xref="GeneID:1235415"
CDS 190833..191747
/locus_tag="SMa0353"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial helix-turn-helix
regulatory protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435436.1"
/db_xref="GI:16262643"
/db_xref="GeneID:1235415"
/translation="MSDPGQPTLDQLRVFIAVVETGSFAAAARKLNRATSVISYTIAN
LEAQLGVTLFDRLSTKKPQLTLEGRTVLAEARSVSNGIDNLRAKVKSMLRGIEPEVHL
ALDVMLPASRVMDALKAFRKEFPSVSLRLYVEALGAVTQIVLNRTATVGISGPLDVDV
LGLERIGVGFVQLVPVAAPDHPLAGGSHAPGAARSHIQLVLTDRSPLTQGHEFAVVGT
HTWRLADLGAKHMLLKEGIGWGNMPEPMVRDDLADGRLVQLDLPDCKGGPYRLQAIYR
TDTPPGPAGRFLIEHFQAQDAKTPTTAW"
misc_feature 190851..191732
/locus_tag="SMa0353"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 190857..191039
/locus_tag="SMa0353"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 191115..191723
/locus_tag="SMa0353"
/note="LysR substrate binding domain; Region:
LysR_substrate; pfam03466"
/db_xref="CDD:217576"
misc_feature order(191172..191177,191181..191186,191193..191195,
191205..191207,191211..191231,191490..191507,
191523..191528,191532..191537)
/locus_tag="SMa0353"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 191922..192416
/locus_tag="SMa0355"
/db_xref="GeneID:1235416"
CDS 191922..192416
/locus_tag="SMa0355"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435437.2"
/db_xref="GI:193782560"
/db_xref="GeneID:1235416"
/translation="MKGPGTPTFDQLKVFLTVVDVGSFAGAARKLNRATSVVSYTIAN
LEAQLGFALFDRDSTRRPCLTEAGRIVLSETRSVANGVNRLRAKAQGLLQGLEPSLSI
ALDAMLPASRVLDALKGFRSEFPTIPLQIRTEQFRALSMLVRQGDIVIRHEYGRRCNG
GPLA"
misc_feature 191940..>192401
/locus_tag="SMa0355"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 191946..192128
/locus_tag="SMa0355"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
gene complement(193272..193553)
/locus_tag="SMa0357"
/db_xref="GeneID:1235418"
CDS complement(193272..193553)
/locus_tag="SMa0357"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435439.1"
/db_xref="GI:16262646"
/db_xref="GeneID:1235418"
/translation="MVDARPVGDYPNLRQLAFLHVSHDWRGKKLALRLYQLCKDTVVG
SGAEGFYISSTPTRRTVEFYLRQGAKLMARPDTTLVSIEPDDIHLAHWF"
misc_feature complement(193275..>193553)
/locus_tag="SMa0357"
/note="Predicted acetyltransferase [General function
prediction only]; Region: COG3153"
/db_xref="CDD:225695"
gene complement(193562..193807)
/locus_tag="SMa0359"
/db_xref="GeneID:1235419"
CDS complement(193562..193807)
/locus_tag="SMa0359"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435440.1"
/db_xref="GI:16262647"
/db_xref="GeneID:1235419"
/translation="MTMGTIIRPLQRAEVELVWQIERREVVQEIYEVADGRLHLRPQF
YDTREWPDGEPEIYTPILFDCFDHDGVFLGALLEKNL"
misc_feature complement(<193565..193804)
/locus_tag="SMa0359"
/note="Predicted acetyltransferase [General function
prediction only]; Region: COG3153"
/db_xref="CDD:225695"
gene complement(193804..194493)
/locus_tag="SMa0360"
/db_xref="GeneID:1235420"
CDS complement(193804..194493)
/locus_tag="SMa0360"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_435441.2"
/db_xref="GI:193782561"
/db_xref="GeneID:1235420"
/translation="MSDPFPDEVDEALWDEACRRAEAVREFLKHRPGKMTAADVALLA
TEVETSRATAYRLIKLFRAGGTVMSLVDRKRGRPEGHRVLDDKREEIIRTTINRHYLT
RNRPTVSQLVRDVQTNCISAGLKRPHRRTIKARLEEIEPQRRAKRRGETEIVKQTQAV
PGVFAASRPLQVVQVDHTKADIFVVDEETRQPIGRPWLTLAMDVCSRMVTGFYLTMDA
PSRLSTRGVAP"
misc_feature complement(194263..194439)
/locus_tag="SMa0360"
/note="Homeodomain-like domain; Region: HTH_23; cl17451"
/db_xref="CDD:248005"
gene 195082..196866
/locus_tag="SMa0364"
/db_xref="GeneID:1235421"
CDS 195082..196866
/locus_tag="SMa0364"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435442.1"
/db_xref="GI:16262649"
/db_xref="GeneID:1235421"
/translation="MDHATKSEATRGSSALPYSDGRSTAAPFHRVRHGLFTAAFSIIP
FSFIVLFAASAGGQSAAVNGLAPQDAVEIHLPGWHTLFGDAAKAALPNGTFTIGSAGA
LELPGIGRVPAAGLHASELAKLIADRLQARSGSHDSPVTIVEPRRPALEGQRVSPPAK
QPAMVEREAMQALGGERSSVEALLRDLAAARKEAEAAREEERAAHQAARDASILHRRH
LAAERQRAAKLTQELTAARVDLETMKTQLKQETNAAHDWKAAVAMIKAAREAAARERS
ERAALEEELRAARREIEAARNGAQMVASEREEPLRHDMVPATGALDTMGVAADGAGAQ
ARKAADTMAERESALEQQRQRAEGLARDLTVLRRDMDSLQAKVAGAIRSKAAALRARR
AGEAALVDAKRALVEERQKIGVYARDLALALQSAAALESRAKLAAAEQAAAAQARKIA
EAAAKRAGEALALELEAGKSLARELDTARRERDAAKEELTQVLAQHTSLKGERAWANG
RELSAARQQHDGKKARTERRVEDVDEPKTRAGNHASERAKTARATGTRSVRELGARKG
RTLETRKPLKIALPNALLPKRWLAPGLW"
misc_feature 195115..>195621
/locus_tag="SMa0364"
/note="Periplasmic protein involved in polysaccharide
export, contains SLBB domain of b-grasp fold [Cell
wall/membrane/envelope biogenesis]; Region: Wza; COG1596"
/db_xref="CDD:224512"
misc_feature 195274..195471
/locus_tag="SMa0364"
/note="Polysaccharide biosynthesis/export protein; Region:
Poly_export; pfam02563"
/db_xref="CDD:202285"
gene 196912..197808
/locus_tag="SMa0367"
/db_xref="GeneID:1235422"
CDS 196912..197808
/locus_tag="SMa0367"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435443.1"
/db_xref="GI:16262650"
/db_xref="GeneID:1235422"
/translation="MVMRKYLTVALLITVAIGPASALDIGVGVSVGGTGVSAGVRTGK
NGTSAGVSTSVGGIGGAKAGTAAGKSGGSSIGASGNLGGIGVGAGVGVGKNGTSAGIG
AGIGGAKAGASVGTSGGSSIRASGNVGRASGGVSTGSVPGAGLSGTGPGNAPSGLAAR
SGSPATGTASRILGAAPEKGVRPSIALPRILWPLKSRRRHERGEWSYPLRFPAPIAAI
TGTPRAVVRVCRQAIAQAASALGGVRVRAVSAGPLHRGRRGTLTAPLDVRIDYAGQGG
REVRQARIRCRLDTSGRVIAVI"
gene 197906..198172
/locus_tag="SMa0369"
/db_xref="GeneID:1235423"
CDS 197906..198172
/locus_tag="SMa0369"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435444.1"
/db_xref="GI:16262651"
/db_xref="GeneID:1235423"
/translation="MYPEMPRAISRSTMDVETDDKSQTIVRGILALAHGLGMRVTAEG
VETADQANWLRNQGCDRLQGNLFSAPIPAGSMEKFLRQSSMASQ"
misc_feature <197930..198124
/locus_tag="SMa0369"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
gene complement(199105..200004)
/locus_tag="SMa0372"
/db_xref="GeneID:1235425"
CDS complement(199105..200004)
/locus_tag="SMa0372"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435446.1"
/db_xref="GI:16262653"
/db_xref="GeneID:1235425"
/translation="MNDYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAEL
GVQLFVRTTRQVSLTTDGAIFAAQLQPAVKTIEDARREVMNAHKADEGRLRISAPTWF
GKAVLPPILSAFKERYPKMSFEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIR
VVPRILVAAPGSRFVDMQHPNELTPDDCLAYSGDSRRENWVLSDGGSSITISAGRAFS
ANNGEVLADIAADGAGVAMLPGFHIFEHLRTGRLVHVFKGWAPPDLWLTLYYPPYQAL
PPRIASFSKFFEEQVPAHMVMLD"
misc_feature complement(199123..199998)
/locus_tag="SMa0372"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(199819..199992)
/locus_tag="SMa0372"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(199156..199731)
/locus_tag="SMa0372"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(199207..199209,199288..199290,
199339..199341,199519..199521,199525..199527,
199570..199572,199687..199689,199699..199701))
/locus_tag="SMa0372"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(199312..199314,199321..199326,
199345..199359,199444..199446,199624..199644,
199648..199650,199660..199662,199669..199674,
199678..199683,199693..199698))
/locus_tag="SMa0372"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene 200116..201048
/locus_tag="SMa0374"
/db_xref="GeneID:1235426"
CDS 200116..201048
/locus_tag="SMa0374"
/codon_start=1
/transl_table=11
/product="dioxygenase/lyase"
/protein_id="NP_435447.1"
/db_xref="GI:16262654"
/db_xref="GeneID:1235426"
/translation="MIKDIKGLHHVTSMASDARQNNRFFTDTLGLRRVKQTVNFDDPS
VYHLYYGDETGSAGTVMTYFPFPNMMLGRPGVGEVGETQFSVPKGSLKFWQDRFTTQG
VDGLERDTVFGADRLRFMGPDGDSFALIESADDKRAPWLADGIPDDAAIRGFAGARFS
LHDSAATEELLGFMGYERAEKEGDVVRFIISNGNGADTIDLLALPKTPFARQGAGSVH
HIAFAVDNREKQLEVRKALMDTGYQVTPVIDRDYFWAIYFRTPGGILFEVATNEPGFN
RDEDTAHLGEALKLPVRYEEYRGQIQANLVPLAA"
misc_feature 200134..200505
/locus_tag="SMa0374"
/note="N-terminal domain of Sphingobium chlorophenolicum
2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and
similar proteins; Region: PcpA_N_like; cd08346"
/db_xref="CDD:211356"
misc_feature 200134..200487
/locus_tag="SMa0374"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:216182"
misc_feature order(200143..200145,200149..200151)
/locus_tag="SMa0374"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:211356"
misc_feature 200572..201039
/locus_tag="SMa0374"
/note="C-terminal domain of Sphingobium chlorophenolicum
2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and
similar proteins; Region: PcpA_C_like; cd08347"
/db_xref="CDD:176695"
misc_feature order(200770..200772,200914..200916)
/locus_tag="SMa0374"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:176695"
gene 201366..202055
/locus_tag="SMa0376"
/db_xref="GeneID:1235427"
CDS 201366..202055
/locus_tag="SMa0376"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_435448.1"
/db_xref="GI:16262655"
/db_xref="GeneID:1235427"
/translation="MSKLEVLTPANSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAK
AAKIFNVPTTITTVETQSFSGNTFPELLAVFPENDLLERTSMNSWDDQNVRDALAKNA
ANGRKKIVVSGLWTEVCNTTFALSALHDVPEYEIYMVADASGGTSSDAHKYAMDRMVQ
AGVIPVTWQQVLLEWQRDWARKETYDAVTTLVKEHSGAYGMGIDYAYTMVHGAEERVK
HGKRIGPNPAK"
misc_feature 201405..201896
/locus_tag="SMa0376"
/note="YcaC related amidohydrolases; E.coli YcaC is an
homooctameric hydrolase with unknown specificity. Despite
its weak sequence similarity, it is structurally related
to other amidohydrolases and shares conserved active site
residues with them; Region: YcaC_related; cd01012"
/db_xref="CDD:238494"
misc_feature 201405..201875
/locus_tag="SMa0376"
/note="Isochorismatase family; Region: Isochorismatase;
pfam00857"
/db_xref="CDD:216156"
misc_feature order(201417..201419,201612..201614,201720..201722)
/locus_tag="SMa0376"
/note="catalytic triad [active]"
/db_xref="CDD:238494"
misc_feature order(201426..201428,201435..201437,201573..201575)
/locus_tag="SMa0376"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238494"
misc_feature 201705..201710
/locus_tag="SMa0376"
/note="conserved cis-peptide bond; other site"
/db_xref="CDD:238494"
gene 202120..202407
/locus_tag="SMa5018"
/db_xref="GeneID:6435256"
CDS 202120..202407
/locus_tag="SMa5018"
/note="pfam07235, DUF1427, Protein of unknown function
(DUF1427); This family consists of several bacterial
proteins of around 100 residues in length; The function of
this family is unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000334.1"
/db_xref="GI:193782562"
/db_xref="GeneID:6435256"
/translation="MKVYLLSLGAGLLVGIVYSLLNVRSPAPPVIALVGLLGILVGEQ
IIPFAKTLWRSEPAAISWLHQIKPHMFGHLPKGSDRIEIAHQAKARVEERS"
misc_feature 202120..202350
/locus_tag="SMa5018"
/note="Protein of unknown function (DUF1427); Region:
DUF1427; cl01771"
/db_xref="CDD:242700"
gene 202407..204389
/locus_tag="SMa0380"
/db_xref="GeneID:1235428"
CDS 202407..204389
/locus_tag="SMa0380"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_435449.1"
/db_xref="GI:16262656"
/db_xref="GeneID:1235428"
/translation="MATRRSFLGGASSLAFANFFSPAKAADPNQTGVDTMHPDLILHN
GRVTTLDRTNPNATAIAIKDGLFLEVGSDSEVMALAGSGTKIVDLKGKGVLPGLIDNH
THVVRGGLNYNMELRWDGVRSLADAMDMLKRQVAITPAPQWVRVVGGFTEHQFAEKRL
PTIEEINAVAPDTPVFLLHLYDRALLNGAALRAVGYTRDTPNPPGGEITRDANGNPTG
LLLAKPNAGILYSTLAKGPKLPLDYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDD
YEVIQKLSDENQMTVRLAYNLFTQKPKEEKQDFLNWTQSVKYKQGNDYFRHNGAGEML
VFSAADFEDFRQPRPEMAPEMEGELEEVLRVLAENRWPWRLHATYDETISRALDVFEK
VNKDIPLEGLNWFFDHAETISDRSIDRIAALGGGIATQHRMAYQGEYFAERYGHGVAE
ATPPIRRMLDKGVNVSAGTDATRVASYNPWVSLSWMVTGKTVGGMQLYPRANCLDRET
ALRMWTEKVTWFSNEEGKKGRIEKGQFADLVVPDKDFFSCAEDEISFIVSELTMVGGK
IVYGAGDFKTLDENEIPPAMPDWSPVRKFGGYAAWGEPERAGARSLRRTAISTCGCAS
DCGVHGHDHAGAWTSKLPIADLKGFFGALGCSCWAV"
misc_feature 202509..204122
/locus_tag="SMa0380"
/note="Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only];
Region: COG1574"
/db_xref="CDD:224490"
misc_feature 202581..204026
/locus_tag="SMa0380"
/note="YtcJ_like metal dependent amidohydrolases. YtcJ is
a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling; Region: YtcJ_like;
cd01300"
/db_xref="CDD:238625"
misc_feature order(202710..202712,202716..202718,203532..203534,
203628..203630,203814..203816)
/locus_tag="SMa0380"
/note="active site"
/db_xref="CDD:238625"
gene 204550..204993
/locus_tag="SMa5019"
/db_xref="GeneID:6435257"
CDS 204550..204993
/locus_tag="SMa5019"
/note="Predicted membrane protein; Similar to S; meliloti
SMa1817"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000335.1"
/db_xref="GI:193782563"
/db_xref="GeneID:6435257"
/translation="MTYHSQLSNPIRSGVARVVGSPVVRTVSLLALCAAYIQGPLTKI
FDFNGALAEMDHFGLHPAPFFAVAVIVFELTASAMVISGLLRWAGALALAGFTLLATF
IALRFWEMAPGMDRMMATNAFFEHLGLAGAFVFVAAFDLTKGAGK"
misc_feature 204604..>204792
/locus_tag="SMa5019"
/note="Predicted membrane protein [Function unknown];
Region: COG2259"
/db_xref="CDD:225168"
gene 204990..206588
/locus_tag="SMa0383"
/db_xref="GeneID:1235429"
CDS 204990..206588
/locus_tag="SMa0383"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435450.1"
/db_xref="GI:16262657"
/db_xref="GeneID:1235429"
/translation="MSAAKSSGGTFAPLAQPVFAVLWTATVLGNTGSFMRDVASAWLM
TDLSASPAAVAMVQAAGTLPIFLLAIPAGVLTDILDRRKFLIAVQLLLASVSISLMVL
SQTGMLSVSSLIGLTFLGGIGAALMGPTWQAIVPELVKREDVKSAVALNSLGINIARS
IGPAAGGLLLAAFGAGITYGADVASYIVVIAALVWWPRAKNANDALQENFFGAFRAGL
RYTRSSTPLHVVLLRAAIFFAFASAVWALLPLVARQLLGGDAGFYGILLGAVGAGAIG
GALVMPKLRERLSSDGLLLGAALITAAVMGVLALAPPKVVAIIVLLFLGGAWITALTT
LNGTAQSVLPNWVRGRGLAVYLTVFNGAMTAGSLGWGAVGEAVGIQSTLIIGAIGLLI
AGLIMHRVKLPAGDADLVPSNHWPEPLVAEPIAHDRGPVLILIEYKVEKQHRTAFLHA
IDHLSRERRRDGAYGWGVTEDSADPEKIVEWFMVESWAEHLRQHKRVSNADADLQGKV
LAYHVGPDKPVVRHFMTINRPGAA"
misc_feature 205014..206579
/locus_tag="SMa0383"
/note="Transmembrane secretion effector; Region: MFS_3;
pfam05977"
/db_xref="CDD:218836"
misc_feature 205044..206135
/locus_tag="SMa0383"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(205086..205088,205095..205103,205107..205112,
205161..205163,205170..205175,205182..205184,
205194..205199,205203..205208,205359..205364,
205371..205376,205383..205388,205395..205397,
205431..205436,205443..205448,205464..205466,
205698..205700,205707..205709,205713..205715,
205722..205727,205734..205736,205776..205778,
205788..205790,205800..205802,205809..205811,
205821..205823,205962..205964,205971..205976,
205983..205985,205995..206000,206007..206009,
206040..206045,206052..206057,206064..206069,
206076..206078)
/locus_tag="SMa0383"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
repeat_region complement(207549..208846)
/standard_name="ISRm3"
/note="SMa3002; predicted by homology"
/rpt_family="ISRm3"
gene complement(207586..208788)
/locus_tag="SMa0384"
/db_xref="GeneID:1235430"
CDS complement(207586..208788)
/locus_tag="SMa0384"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="TRm3 transposase"
/protein_id="NP_435451.1"
/db_xref="GI:16262658"
/db_xref="GeneID:1235430"
/translation="MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELD
DHLDVERLEGGPANRRNGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPDF
DDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYP
LVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLWIEQTEGAKFWLRVMNELK
NRGCQDILIAVVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPAL
RAIYRARDAEAGLKALEAFEEGYWGQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYT
TNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAV
IFGERFFN"
misc_feature complement(207652..208782)
/locus_tag="SMa0384"
/note="Transposase, Mutator family; Region:
Transposase_mut; pfam00872"
/db_xref="CDD:216166"
misc_feature complement(208015..208257)
/locus_tag="SMa0384"
/note="MULE transposase domain; Region: MULE; pfam10551"
/db_xref="CDD:220806"
gene complement(209020..210132)
/gene="hisC3"
/locus_tag="SMa0387"
/db_xref="GeneID:1235431"
CDS complement(209020..210132)
/gene="hisC3"
/locus_tag="SMa0387"
/EC_number="2.6.1.9"
/note="catalyzes the formation of
3-(imidazol-4-yl)-2-oxopropyl phosphate and L-glutamate
from L-histidinol phosphate and 2-oxoglutarate"
/codon_start=1
/transl_table=11
/product="histidinol-phosphate aminotransferase"
/protein_id="NP_435452.1"
/db_xref="GI:16262659"
/db_xref="GeneID:1235431"
/translation="MAIPSRPIREEIRSIAPYNAGLTLEEVRAKYHVDEVAKLSSNEN
PLGPSPALRRLFPDIGELARLYPDPQGRALCARLAASFDVENNQVILGNGSEDLIAVI
CRSVVRAGDTVVTLYPSFPLHEDYTTLMGGKVDRVTVTPDLSVDMDALLAAIARKPRM
LMFSNPMNPVGSWLTPLQLAKVVAALDPETLIVVDEAYAEYAAGDDYPSAAEVLKVTG
LNWVVLRTFSKAYGLAGLRIGYGIVSDGSLCDFFNRARTPFNTNAIAQVSALAAFDDT
YHLNRSVELALVERERMKKELATMGYRIAPSKCNFLFFDARTEATPVAEALLRRGVIV
KPWKQPRFETYIRVSIGSPVENDHFIHALKEVEAVG"
misc_feature complement(209026..210132)
/gene="hisC3"
/locus_tag="SMa0387"
/note="histidinol-phosphate aminotransferase; Provisional;
Region: PRK05166"
/db_xref="CDD:179950"
misc_feature complement(209038..210021)
/gene="hisC3"
/locus_tag="SMa0387"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(209422..209424,209446..209451,
209455..209457,209539..209541,209629..209631,
209773..209775,209845..209853))
/gene="hisC3"
/locus_tag="SMa0387"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(209329..209331,209338..209340,
209422..209430,209560..209562,209743..209745,
209842..209844))
/gene="hisC3"
/locus_tag="SMa0387"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(209446..209448)
/gene="hisC3"
/locus_tag="SMa0387"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 210263..211030
/locus_tag="SMa0389"
/db_xref="GeneID:1235432"
CDS 210263..211030
/locus_tag="SMa0389"
/note="glimmer prediction; N-terminus - short chain
motif, PF00106; C-terminus - short chain
dehydrogenase/reductase C-terminus motif, PF00678"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435453.2"
/db_xref="GI:193782564"
/db_xref="GeneID:1235432"
/translation="MTSPIFDLSGRRALVTGASRGIGQSIAVALAEAGAHVAVTARTV
EGLAETRALIEKTGRRAVALAQDVRDVEACASVTRAAAEGLGGLDILVNNAGFENVRP
SFDVDEALWDTIVSTNLKGAFFCAQAAGRIMADANGGAIVNLCSLTSYVGIPTAVPYG
ASKSGLLGVTRALATEWAAHNIRVNAIAPGYFRTAMTAGFYEDEDWQSRMLEKIPQRR
FGKESDIGGVAVFLCSDAAAYITGHCIPADGGYLASI"
misc_feature 210278..211021
/locus_tag="SMa0389"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature 210278..211012
/locus_tag="SMa0389"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05557"
/db_xref="CDD:235500"
misc_feature order(210311..210313,210317..210322,210326..210328,
210383..210391,210542..210550,210692..210700,
210737..210739,210749..210751,210827..210838)
/locus_tag="SMa0389"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(210614..210616,210698..210700,210737..210739,
210749..210751)
/locus_tag="SMa0389"
/note="active site"
/db_xref="CDD:187535"
gene 211336..212469
/locus_tag="SMa0391"
/db_xref="GeneID:1235433"
CDS 211336..212469
/locus_tag="SMa0391"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; ABC transporter PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435454.1"
/db_xref="GI:16262661"
/db_xref="GeneID:1235433"
/translation="MGAVAAGLRPTGSVNPGAVSVKDVGMAFGDVHAVRNASFDLPKG
RFLTILGPSGSGKTTLLRMIAGFDRPTHGEIFINGRPVSAVPPHKRAIGMVFQKLALF
PHMTAAENVAFPLKMRRHDARTIPEKVERYLDLVRLGGYGDRRINELSGGQQQRVAIA
RALVFEPDLLLLDEPLAALDRKLREEMQLEFRRIQKELGVTTINVTHDQREALVVSDE
IIIMNGGAIQQKARPVDAYRAPSNAFVANFIGVTNFLEGRIVELTSTQAVFETNGVRL
VGIAADAALAPGLSCSGALRAEQIRIAPMGGRLDELETLVDGQVVDCIFEGDRVVYEI
RVPDLAGVLMRVFDHDPESHLQFGPGDEVRLGWNARDMHVFQK"
misc_feature 211378..212466
/locus_tag="SMa0391"
/note="ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism];
Region: PotA; COG3842"
/db_xref="CDD:226361"
misc_feature 211390..212085
/locus_tag="SMa0391"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 211486..211509
/locus_tag="SMa0391"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(211495..211500,211504..211512,211624..211626,
211852..211857,211954..211956)
/locus_tag="SMa0391"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 211615..211626
/locus_tag="SMa0391"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 211780..211809
/locus_tag="SMa0391"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 211840..211857
/locus_tag="SMa0391"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 211864..211875
/locus_tag="SMa0391"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 211942..211962
/locus_tag="SMa0391"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
misc_feature 212215..212460
/locus_tag="SMa0391"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:219823"
gene 212503..213618
/locus_tag="SMa0392"
/db_xref="GeneID:1235434"
CDS 212503..213618
/locus_tag="SMa0392"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435455.1"
/db_xref="GI:16262662"
/db_xref="GeneID:1235434"
/translation="MSHEKFLSAQIGRRTLLASMAAAGASAGLSTLGVSRAFAQEPEK
PAEIIVRAWGGSWVDALKAGVSDSFTKMTGIAVRHDLTEDNEIQPKVWAAVAQKRVPP
IHINWDTTTNATKSALRGVTEDLSDLPNLKNATDLAKPVGLDGYPIVNTYGYVYVLAY
RPSAFPNGAPKSWKDLLDPKLKGRIALYNDGIGFHFPAQVAGGGKLEDIPANMQPAWD
FISKIKEQQPLLGEDPDFTTWFQKGEIDAACTISTNAREAKKNGIEIAWVVPEEGAKF
DTDGLWIPKGLPENELYWAKQYINHALTKEAQQIWLDGLGLPGVIPGITPPADLVGDP
SYPTTEEDFKQLIRISAKVQVENESQWFAKFKEIMQG"
misc_feature 212701..213516
/locus_tag="SMa0392"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_8; pfam13416"
/db_xref="CDD:222114"
misc_feature 212884..213504
/locus_tag="SMa0392"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; cl17199"
/db_xref="CDD:247753"
gene 213683..214627
/locus_tag="SMa0394"
/db_xref="GeneID:1235435"
CDS 213683..214627
/locus_tag="SMa0394"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; binding-protein-dependent
transport systems inner membrane component, PF00528"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435456.1"
/db_xref="GI:16262663"
/db_xref="GeneID:1235435"
/translation="MRAPRAAYPLTWRVMDVLERLAAIVWPSSFQRGLPYLMLMPALV
LVGLLVLGLVQIGDTSLRTLDTNTFLMSESYTLANYQRVLTESFFATVAGRSLVGSVI
VTVITLLLAFPYAYLMVRTPSSALRKFLLVALFLPFFIGQVVRAYGWLIILGNQGMVN
EALGLVGVPPIRLLYNYPAVLFGLVQYMLPFAVLMLAPALTAIPSELEAAAASLGAGW
TRTFRHIVLPLSRPGLVGAGLVVLTLSLTDFAIPAILGGGTQDFIANAIYDQFFRTSD
QGMGATLSLMLVAVGSMLVGVVFMLFGAGTLAMTGDRK"
misc_feature 213968..214564
/locus_tag="SMa0394"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(214007..214012,214019..214024,214037..214039,
214070..214081,214085..214114,214121..214126,
214130..214132,214235..214237,214241..214243,
214247..214249,214253..214255,214262..214267,
214271..214273,214283..214288,214295..214297,
214346..214348,214388..214393,214400..214402,
214421..214432,214439..214444,214481..214486,
214514..214519,214526..214531,214535..214540,
214547..214552,214559..214564)
/locus_tag="SMa0394"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(214088..214132,214421..214438)
/locus_tag="SMa0394"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(214130..214132,214220..214222,214439..214441,
214475..214477,214484..214486,214514..214516)
/locus_tag="SMa0394"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(214298..214336,214352..214357,214367..214369)
/locus_tag="SMa0394"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 214624..215424
/locus_tag="SMa0396"
/db_xref="GeneID:1235436"
CDS 214624..215424
/locus_tag="SMa0396"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435457.1"
/db_xref="GI:16262664"
/db_xref="GeneID:1235436"
/translation="MTGSKSKSFVLWAFVTTALLMLSAPTVVVLGASFTAGNIITFPP
DGLSLKWYGAIAQASDLRQAFVRSLIVATICTLVSIPVGTLAGIALAKYRVRFARSIQ
IYLLLPFTIPLIGSGIGMMLVLGNMGVLGKLWPVGIACAVINLPFMIWAVTASASNLS
PDLELAAANCGAPPLQRFLYITLPAVLPGVITGSLLMFILALNEFLVSLLLVDARSVT
LPVQIYNSIRSIITPDLAAISVVFIACAGLAIALLDRLVGLDIFLKSK"
misc_feature 214624..215397
/locus_tag="SMa0396"
/note="ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism]; Region: PotC; COG1177"
/db_xref="CDD:224098"
misc_feature 214816..215373
/locus_tag="SMa0396"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(214864..214869,214876..214881,214894..214896,
214924..214935,214939..214968,214975..214980,
214984..214986,215047..215052,215056..215058,
215062..215064,215071..215076,215080..215082,
215092..215097,215104..215106,215155..215157,
215197..215202,215209..215211,215230..215241,
215248..215253,215290..215295,215323..215328,
215335..215340,215344..215349,215356..215361,
215368..215373)
/locus_tag="SMa0396"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(214942..214986,215230..215247)
/locus_tag="SMa0396"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(214984..214986,215032..215034,215248..215250,
215284..215286,215293..215295,215323..215325)
/locus_tag="SMa0396"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(215107..215145,215161..215166,215176..215178)
/locus_tag="SMa0396"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 215421..216791
/gene="hisD2"
/locus_tag="SMa0398"
/db_xref="GeneID:1235437"
CDS 215421..216791
/gene="hisD2"
/locus_tag="SMa0398"
/EC_number="1.1.1.23"
/function="Small molecule metabolism; Amino acid
biosynthesis; histidine"
/note="catalyzes the oxidation of L-histidinol to
L-histidinaldehyde and then to L-histidine in histidine
biosynthesis; functions as a dimer"
/codon_start=1
/transl_table=11
/product="histidinol dehydrogenase"
/protein_id="NP_435458.3"
/db_xref="GI:187729962"
/db_xref="GeneID:1235437"
/translation="MTLRPQLARYKDKTMTSVSFYEYSKLNAEEKAALLRRSETDISG
FIEKVAPILEAVRTEGDKALARFGRELDKADVTEANLKVTAAEFDAAFKLVDASVLES
VQFGIDNIRKFHEEQKPEAMWLKEIRPGAFAGDRFTPIQSVALYVPRGKGSFPSVTMM
TSVPAVVAGVPNLAIVTPPAPDGSVDAATLVAARLAGVETVYKAGGAQAVAAVAYGTE
TVKPALKIVGPGSPWVVAAKRSLSGVIDTGLPAGPSEVMILADDTVHGGLAALDLLIE
AEHGPDSSAYLVTHSGRVAEEALAALPEHWARMTEQRTAFSKTVLSGKTGGIVLTSSI
EESYEFVNAYAPEHLELLSEQPFIHLGHITEASEILMGTHTPVSIANFSLGPNAVLPT
SRWARTFGPLSVTDFVKRSSIGYVTAPAYPEFARHSHNLAIYEGFSSHALAVSPVRDA
YLKKGA"
misc_feature 215493..216776
/gene="hisD2"
/locus_tag="SMa0398"
/note="Histidinol dehydrogenase [Amino acid transport and
metabolism]; Region: HisD; COG0141"
/db_xref="CDD:223219"
misc_feature 215556..216740
/gene="hisD2"
/locus_tag="SMa0398"
/note="Histidinol dehydrogenase, HisD, E.C 1.1.1.23.
Histidinol dehydrogenase catalyzes the last two steps in
the L-histidine biosynthesis pathway, which is conserved
in bacteria, archaea, fungi, and plants. These last two
steps are (i) the NAD-dependent...; Region: Histidinol_dh;
cd06572"
/db_xref="CDD:119329"
misc_feature order(215631..215633,215856..215858,215862..215867,
215889..215891,215952..215954,216033..216038,
216042..216044,216105..216113,216117..216122,
216255..216257)
/gene="hisD2"
/locus_tag="SMa0398"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:119329"
misc_feature order(215712..215717,215724..215729,215733..215735,
215742..215747,215754..215759,215766..215771,
215793..215795,215799..215801,215811..215825,
215832..215834,215838..215840,215874..215888,
216090..216092,216135..216137,216147..216149,
216219..216224,216231..216236,216240..216248,
216252..216257,216474..216476,216489..216491,
216498..216503,216507..216533,216537..216539,
216543..216548,216552..216566,216570..216572,
216576..216578,216606..216611,216615..216629,
216633..216638,216645..216668,216711..216716,
216720..216740)
/gene="hisD2"
/locus_tag="SMa0398"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:119329"
misc_feature order(215880..215882,215886..215888,216180..216182,
216255..216257,216459..216464,216549..216551,
216561..216566,216582..216584,216723..216725,
216729..216731,216738..216740)
/gene="hisD2"
/locus_tag="SMa0398"
/note="product binding site; other site"
/db_xref="CDD:119329"
misc_feature order(215886..215888,216180..216182,216246..216248,
216255..216257,216459..216464,216549..216551,
216561..216566,216582..216584,216723..216725,
216729..216731,216738..216740)
/gene="hisD2"
/locus_tag="SMa0398"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119329"
misc_feature order(216246..216248,216255..216257,216561..216563,
216738..216740)
/gene="hisD2"
/locus_tag="SMa0398"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:119329"
misc_feature 216459..216464
/gene="hisD2"
/locus_tag="SMa0398"
/note="catalytic residues [active]"
/db_xref="CDD:119329"
gene 216795..217808
/locus_tag="SMa0400"
/db_xref="GeneID:1235438"
CDS 216795..217808
/locus_tag="SMa0400"
/note="zinc-binding motif, PF00107"
/codon_start=1
/transl_table=11
/product="Dehydrogenase, Zn-dependent"
/protein_id="NP_435459.1"
/db_xref="GI:16262666"
/db_xref="GeneID:1235438"
/translation="MKAVRLYDIRDLRVEEVAELAAPPPGFVNLEVRAAGICGSDLHN
YRTGQWISRRPSTAGHEFCGRVTAIGEGVSHLVRGDVVSADSRMWCGTCPACASGRSN
VCETLGFLGEVCDGGFAEAVQLPSRLVFRHDPKLSPHVAAMAEPLAVALHAVRRLAVP
DGAPVLVMGCGTIGGLSALLLSRLHQGPLLLTDLNADKAALVAEVTGGVVVALDGAAI
EEALPGTRLRHALDATGSIQAIARALDILSGGGALALVGIGHGKLDLDPNILVEREIS
LVGCHAFAGELPEAIELLADLAPALQRFIEVLPTLDDVPEAYERLLRGESNALKTIIE
VAG"
misc_feature 216795..217796
/locus_tag="SMa0400"
/note="Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only]; Region: Tdh; COG1063"
/db_xref="CDD:223991"
misc_feature 216795..217793
/locus_tag="SMa0400"
/note="Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR; cl16912"
/db_xref="CDD:247637"
misc_feature order(216906..216914,216921..216923,217227..217229,
217239..217241,217299..217316,217371..217376,
217386..217388,217491..217496,217560..217565)
/locus_tag="SMa0400"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:176178"
gene 217871..218602
/locus_tag="SMa0402"
/db_xref="GeneID:1235439"
CDS 217871..218602
/locus_tag="SMa0402"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory protein,
gntR family, PF00392"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435460.1"
/db_xref="GI:16262667"
/db_xref="GeneID:1235439"
/translation="MNTLSDSASPLYEKVKDFVLGNIGSGKWARNSRLPSENELVSAL
GVSRMTVHRALRELTSEGHLRRIQGVGTFVAPPRPRSTLIEISNIITEIKTRGSRHRA
EVVVLERIARPEPELLLAFEFETVKPVDHSVVIHFENDLPVQLEERYVNPNLVSGYID
QDFAAVATYDYLQNATPLTEVEHLISALPANAEQARLLNVRPGDCCLILHRKTWTGPV
VATVNTFTYVGSRYSLGSRYLHGGK"
misc_feature 217898..218584
/locus_tag="SMa0402"
/note="histidine utilization repressor, proteobacterial;
Region: his_ut_repres; TIGR02018"
/db_xref="CDD:188194"
misc_feature 217898..218095
/locus_tag="SMa0402"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(217898..217900,217904..217906,217973..217975,
217979..217984,218006..218020,218024..218029,
218036..218038,218066..218071,218075..218086)
/locus_tag="SMa0402"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 218156..218569
/locus_tag="SMa0402"
/note="UTRA domain; Region: UTRA; pfam07702"
/db_xref="CDD:219527"
gene 218550..219938
/locus_tag="SMa0403"
/db_xref="GeneID:1235440"
CDS 218550..219938
/locus_tag="SMa0403"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435461.1"
/db_xref="GI:16262668"
/db_xref="GeneID:1235440"
/translation="MSAAATRSAAAICTAASDRRSYALKDPSGKNAMSQPTSRTAEIR
KVAKTGDGKAEQLLAELLRDLFRIEARNVAINHDQYSLNSLNGFFETEDGAFFFKFHQ
EEGEEAMSGEYYRADILARAGLPVDQPLLMSVIPGEQILVYRRRTDPRFSDVLRALDL
KDDAAARGRAVEAERRLSEAVLKVYLATLHTVGAREVAAEPIHRLFYERLVDRSAASY
PGGRMASFYVGKDFAFPNLTLDWETLSRCRFVVNGIEYSDSIGALFDAAHERLNPARL
ADAGGVVAHGDAHNANVWYEERDGGAHLSFFDPAFAGENIPALLAEVKTTFHNILAHP
LWLYDPAMAAGRYKASAVLDGALLRVTTDFAPSPVRRALLDVKAEALWRPLLSELKAR
GMLPADWRRVIRLGLFLCPTLVMNLRAGATTHNAISSLIGFSVAVMAGSEPVAGDDLI
SRFIDTIDPDNG"
gene 219940..221085
/locus_tag="SMa0404"
/db_xref="GeneID:1235036"
CDS 219940..221085
/locus_tag="SMa0404"
/note="glimmer prediction; FMN-dependent motif, PF01070"
/codon_start=1
/transl_table=11
/product="FMN-dependent dehydrogenase"
/protein_id="NP_435462.1"
/db_xref="GI:16262669"
/db_xref="GeneID:1235036"
/translation="MALVNIDDFRDLARRRRPKIFFDYIDGGSFEEETMRANRSDFSR
LTLRQNVLVEPQPQDLATAYLGKRHPLPFMLGPVGFLGLYSGKGEVKAVRAAHAAGIP
FCLSTFSIASLADLRIVTDGPLHFQLYVLEDRSLCEEFLRAAEYAGVDTLFVTVDTAI
TGIRERDVRNGFRSLTRVTPDLFARLALKPRWLAEVVLAGMPSVRAVEHRPEFGRGAL
EQAANLSRRIDKTLSWKDIAWLRERWAGKLVIKGVLTPADAVRARDLGCDGVVVSNHG
GRQLDGAPSTIRALPSIRATVGTDFCLMLDGGIRRGADVIKAIALGADGVMLGRAYAY
GLSAAGQAGVAEVIAILEREISISLALMGIASVEQLKALGAEAVSTL"
misc_feature 219955..221052
/locus_tag="SMa0404"
/note="Isopentenyl diphosphate isomerase (BS_ypgA, MTH48
and related proteins) [Coenzyme transport and metabolism];
Region: idi; COG1304"
/db_xref="CDD:224223"
misc_feature 219958..221049
/locus_tag="SMa0404"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl17186"
/db_xref="CDD:247740"
misc_feature order(220858..220863,220924..220929)
/locus_tag="SMa0404"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:240073"
gene 221438..221725
/locus_tag="SMa0405"
/db_xref="GeneID:1235037"
CDS 221438..221725
/locus_tag="SMa0405"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="transposase, fragment"
/protein_id="NP_435463.2"
/db_xref="GI:193782565"
/db_xref="GeneID:1235037"
/translation="MTPKKCQSSESDHSGRISKIGDGSVRTALYEAANVILTRPVKGS
DLKGWALAVARRAGPRKARVALARKLAVVLHCMLRDRTNFIAHKGAPALAA"
misc_feature <221438..221554
/locus_tag="SMa0405"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:202223"
gene 222078..222866
/locus_tag="SMa0407"
/db_xref="GeneID:1235038"
CDS 222078..222866
/locus_tag="SMa0407"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435464.1"
/db_xref="GI:16262671"
/db_xref="GeneID:1235038"
/translation="MELRVGGAKPSDNSPAASKGFSDPLDSHGVPGRSKQYLIHSAFT
GTIGGVAMAYVDWAIKGPKIASCSCDYGCPCEFNGKPTEGLCEGLECMLIEEGWFGDL
RLDGLKVAAVYRWPGPVHEGGGVVRGFFDANADQAQIDALFTILGGKEQEPTTVFNIY
GSTIAQELEPIFAPIEFHSDIEKRTGGFRIDGHLELELEPIRNPVTGAPHRARIVLPE
GFEFRQAEIASGTFNANGEIAMGRQKRYGALWRAAYGPYGIIEE"
misc_feature 222228..222851
/locus_tag="SMa0407"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5588"
/db_xref="CDD:35147"
gene complement(223861..224175)
/locus_tag="SMa0412"
/db_xref="GeneID:1235040"
CDS complement(223861..224175)
/locus_tag="SMa0412"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435466.2"
/db_xref="GI:193782566"
/db_xref="GeneID:1235040"
/translation="MIKMSVYYPADGGSKFDHDYYRTRHMPLIQERLGDACLRYEIDK
GLAGREPGSAPEFVAACHVYSPSLATFQEALGPHRSEIAADVANYTDIAPIVQISEVV
EG"
misc_feature complement(223864..224172)
/locus_tag="SMa0412"
/note="conserved hypothetical protein; Region: TIGR02118"
/db_xref="CDD:131173"
gene 224805..226475
/locus_tag="SMa0414"
/db_xref="GeneID:1235041"
CDS 224805..226475
/locus_tag="SMa0414"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; C-terminal DNA ligase motif,
PF01068"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435467.1"
/db_xref="GI:16262674"
/db_xref="GeneID:1235041"
/translation="MADNLSKDRAKRDFKKTREPSGEAQVKPSNRRRFVIQKHDATRL
HYDLRLELDGVFKSWAVTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTVPKGQYGGGTV
MLWDRGYWEPEGRKSPEEALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLI
KHRDDYSVDENGAAILEENATSVASGRSMEQIAEGTGRKPRPFMMANADVEADAVWDS
KHGLAAEERKKGSRRDVATSTAADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQ
MRIADGKVTLKTRKGLDWTAKYPEIADAASELPDCIIDGEICALDDNGAPDFAALQAA
LSEGKTGNLVYFAFDLLFDGGEDLRSMRLVERKKRLEDFLAAGSDDPRIRYVDHFESG
GDAVLRSACKLSLEGIVSKQMDAPYQSGRTDTWAKSKCRAGHEVVIGGYATTNGKFRS
LLVGVHRGDHFVYVGRVGTGFGAAKVERFFPKLKALEASKSPFTGIGAPKKEKEVTWL
PDGRALPACRVRSSTDVVRFRRSGRSPRALRSDRSEGRASCPRRLSPV"
misc_feature 224817..225299
/locus_tag="SMa0414"
/note="DNA ligase D, 3'-phosphoesterase domain; Region:
LigD_PE_dom; TIGR02777"
/db_xref="CDD:131824"
misc_feature 225021..226457
/locus_tag="SMa0414"
/note="ATP-dependent DNA ligase [DNA replication,
recombination, and repair]; Region: CDC9; COG1793"
/db_xref="CDD:224706"
misc_feature 225543..226097
/locus_tag="SMa0414"
/note="Adenylation domain of Mycobacterium tuberculosis
LigD and LigC-like ATP-dependent DNA ligases; Region:
Adenylation_DNA_ligase_LigD_LigC; cd07906"
/db_xref="CDD:185715"
misc_feature order(225603..225614,225618..225626,225669..225671,
225750..225752,225786..225788,225846..225848,
226020..226022,226029..226031,226035..226037,
226077..226079,226083..226085)
/locus_tag="SMa0414"
/note="active site"
/db_xref="CDD:185715"
misc_feature order(225609..225611,225618..225626,225666..225674,
225678..225680,225684..225686,225786..225791,
225798..225806,226020..226022,226083..226085,
226089..226091)
/locus_tag="SMa0414"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:185715"
misc_feature 226104..226439
/locus_tag="SMa0414"
/note="The Oligonucleotide/oligosaccharide binding
(OB)-fold domain of ATP-dependent DNA ligase LigD is a
DNA-binding module that is part of the catalytic core
unit; Region: OBF_DNA_ligase_LigD; cd07971"
/db_xref="CDD:153440"
misc_feature order(226149..226151,226197..226202,226206..226223,
226377..226379,226383..226388,226404..226406)
/locus_tag="SMa0414"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:153440"
gene 226536..227393
/locus_tag="SMa0417"
/db_xref="GeneID:1235042"
CDS 226536..227393
/locus_tag="SMa0417"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435468.1"
/db_xref="GI:16262675"
/db_xref="GeneID:1235042"
/translation="MKPELVAEIEFAGWTADGLVRQAAFKGLREDKPAKEVQAEKPSP
PAKTDTPEPGPSAKTRPVRRKGAKAEVMGVLISSPDKPLWPDAGDGEPVTKEDLARYH
EAVGTLFDLDPGPDVPFATVVAAAREMRDRLDELGLVSFCKTTGGKGLHVVTPFAVNK
RKPLSWAEAKGFAHDVCEQMARDNPDLYLIKMSKSLRGGRIFLDYLRNDRMATAVAPL
SPRARPGATVSMPLNWTQVKSDLYPKRFTVRTVPALLAKTTAWQDYCDGERPLEQAIK
RLGKSRRAA"
misc_feature <226539..226646
/locus_tag="SMa0417"
/note="The Oligonucleotide/oligosaccharide binding
(OB)-fold domain of ATP-dependent DNA ligase LigD is a
DNA-binding module that is part of the catalytic core
unit; Region: OBF_DNA_ligase_LigD; cd07971"
/db_xref="CDD:153440"
misc_feature 226734..>226856
/locus_tag="SMa0417"
/note="AE_Prim_S_like: primase domain similar to that
found in the small subunit of archaeal and eukaryotic
(A/E) DNA primases. The replication machineries of A/Es
are distinct from that of bacteria. Primases are
DNA-dependent RNA polymerases which synthesis...; Region:
AE_Prim_S_like; cl01287"
/db_xref="CDD:242415"
misc_feature <226857..227381
/locus_tag="SMa0417"
/note="Predicted eukaryotic-type DNA primase [DNA
replication, recombination, and repair]; Region: COG3285"
/db_xref="CDD:225823"
misc_feature order(226863..226865,226869..226871,226968..226970,
226977..226982,226986..226988,227145..227147,
227172..227174)
/locus_tag="SMa0417"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:238291"
gene 227425..228318
/locus_tag="SMa5020"
/db_xref="GeneID:6435258"
CDS 227425..228318
/locus_tag="SMa5020"
/note="Very similar to S; meliloti SMb21696"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000336.1"
/db_xref="GI:193782567"
/db_xref="GeneID:6435258"
/translation="MDEETKDQSSTSTRVGATTDLPHDRITLARFREAFPRARWSDRL
NAWFVPGRTAEKRISRWLAEMEAEADRFADEKGRDAFAFDPIESRYLEATPATLQIQT
PYSRTVVNEIREIPPARWDADRRLWTVPYRSFDELRRRWPTIEAAAERSEPEARRARR
EAIKGTQQDEASKARMRERRRKRYPVPADDAPPSDRAIGTHVGVVFFLGTDGELADPA
TVTAFYFPAANSEEYVWASWRLGSLEELVTTWPARTPPNKHELERGWWIPDLGELRIA
RRDAQSRRRARERKEKGECSR"
gene 228306..228824
/locus_tag="SMa0421"
/db_xref="GeneID:1235043"
CDS 228306..228824
/locus_tag="SMa0421"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435469.1"
/db_xref="GI:16262676"
/db_xref="GeneID:1235043"
/translation="MLPVKDQQTALEEFRSLPPIAPRELVGLWKGHGIPTGHPFDGVL
ENLSWFGKRFTPDMRVDALLFRSGDRRLVAIDPKWIPLRLALRFHEVGRMRVARNLFS
YLQRGLRAKGPVASSKTMVFGGVESAAMVYDHQPIVDHFRRIHADRIMGAMTIRNDER
IYFFELQRVDGP"
misc_feature 228336..228515
/locus_tag="SMa0421"
/note="GXWXG protein; Region: GXWXG; pfam14231"
/db_xref="CDD:206399"
misc_feature 228633..228809
/locus_tag="SMa0421"
/note="Domain of unknown function (DUF4334); Region:
DUF4334; pfam14232"
/db_xref="CDD:206400"
gene 228821..229255
/locus_tag="SMa5021"
/db_xref="GeneID:6435259"
CDS 228821..229255
/locus_tag="SMa5021"
/note="Very weak similarity, possibly spurious, to domain
of unknown function, DUF768"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000337.1"
/db_xref="GI:193782568"
/db_xref="GeneID:6435259"
/translation="MKCAQPAIIYRSPPVSMIALPSSLSAAVVRVRQGAPRKGRAPCS
FVSRVFLKLGGVILRTISVPKGSPRQEVQAMKPEQFLERWKSEHIDSGTQQSDATRLV
EDLLADAEKEGISRDMLVDAAGGGLVNYIVGAIKEAVEEELW"
misc_feature 229058..229225
/locus_tag="SMa5021"
/note="Protein of unknown function (DUF768); Region:
DUF768; pfam05589"
/db_xref="CDD:114319"
gene complement(229290..230330)
/locus_tag="SMa0424"
/db_xref="GeneID:1235044"
CDS complement(229290..230330)
/locus_tag="SMa0424"
/function="Macromolecule metabolism; Macromolecule
synthesis, modification; proteins and peptides-translation
and modification"
/note="glimmer prediction; DNA ligase, PF1068"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA ligase"
/protein_id="NP_435470.1"
/db_xref="GI:16262677"
/db_xref="GeneID:1235044"
/translation="MSRRAKPLLQDDSVAKSKPARPRDPAQPNLPFDPMAERIEPCLA
LLKPVPPKGPDWVFEVKWDGYRLAIHIEPKGVRIITRGGHDWTHRFPAIAEATSKLGV
GTAILDGEAVVLDEEGRSDFGALQRSLGGRGGKRSSTESVFFAFDLLYFDGHDLSGTE
LSVRRHLLEGFLDGPTGAIQSSEEVFGDGALLEKACSMGLKGIIAKHRDWPYRSGRTG
DWLKIKCLQSESFMIVGYEQSLTARGGLGSLLLAGRKGHDWIYVGSVGTGFNTKDAEY
LRKTLDRLKTSKPAVPLKGKNLVFAQPTLIAEIEFRGWTHDGSLRHASYKGLREVQDN
AAVFDMSERAIL"
misc_feature complement(229656..230216)
/locus_tag="SMa0424"
/note="Adenylation domain of Mycobacterium tuberculosis
LigD and LigC-like ATP-dependent DNA ligases; Region:
Adenylation_DNA_ligase_LigD_LigC; cd07906"
/db_xref="CDD:185715"
misc_feature complement(229317..230204)
/locus_tag="SMa0424"
/note="DNA polymerase LigD, ligase domain; Region:
NHEJ_ligase_lig; TIGR02779"
/db_xref="CDD:234009"
misc_feature complement(order(229665..229667,229671..229673,
229713..229715,229719..229721,229728..229730,
229893..229895,229965..229967,230001..230003,
230088..230090,230133..230141,230145..230156))
/locus_tag="SMa0424"
/note="active site"
/db_xref="CDD:185715"
misc_feature complement(order(229659..229661,229665..229667,
229728..229730,229947..229955,229962..229967,
230073..230075,230079..230081,230085..230093,
230133..230141,230148..230150))
/locus_tag="SMa0424"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:185715"
misc_feature complement(229320..229652)
/locus_tag="SMa0424"
/note="The Oligonucleotide/oligosaccharide binding
(OB)-fold domain of ATP-dependent DNA ligase LigD is a
DNA-binding module that is part of the catalytic core
unit; Region: OBF_DNA_ligase_LigD; cd07971"
/db_xref="CDD:153440"
misc_feature complement(order(229359..229361,229365..229370,
229374..229376,229518..229535,229539..229544,
229590..229592))
/locus_tag="SMa0424"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:153440"
gene complement(230327..231133)
/locus_tag="SMa0426"
/db_xref="GeneID:1235045"
CDS complement(230327..231133)
/locus_tag="SMa0426"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435471.1"
/db_xref="GI:16262678"
/db_xref="GeneID:1235045"
/translation="MALRPYWKGYLKLSLVTCPVQMMPATSESEKVRFHTLNRQTQNR
VVSHYVDSVTGKEVKEEDEVKGYQRGEHEYVILEDEELENVALESTKTIDISTFTPRD
SIEWIWLDTPYCLSPNDPVGQEAFSVIRDAMEAQNMVGISRLVISRRERAVMLEPRGK
GIVLWTLRYGDEVRDEDSYFEAIGDEQADSEMMPLVQQLIKKQTKDWTPKMVADPVQE
RLLEIIAAKKKALKPQKAQGKTAPSSSPSNVVSIMDALRKSVAAEKRATK"
misc_feature complement(230330..231133)
/locus_tag="SMa0426"
/note="Ku-homolog [Replication, recombination, and
repair]; Region: COG1273"
/db_xref="CDD:224192"
misc_feature complement(230342..231124)
/locus_tag="SMa0426"
/note="Ku-core domain, Ku-like subfamily; composed of
prokaryotic homologs of the eukaryotic DNA binding protein
Ku. The alignment includes the core domain shared by the
prokaryotic YkoV-like proteins and the eukaryotic Ku70 and
Ku80. The prokaryotic Ku...; Region: KU_like; cd00789"
/db_xref="CDD:238408"
misc_feature complement(order(230693..230695,230987..230989,
231032..231034,231062..231064,231119..231121))
/locus_tag="SMa0426"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238408"
misc_feature complement(order(230354..230356,230363..230365,
230453..230455,230492..230500,230513..230515,
230525..230527,230612..230614,230618..230626,
230705..230707,230762..230764,230807..230809,
230837..230842,230846..230848,230903..230905,
230912..230917,230927..230932,230936..230938,
230942..230950,230960..230962,230978..230986,
230990..231001,231008..231010,231023..231034,
231047..231052,231056..231064,231083..231085))
/locus_tag="SMa0426"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:238408"
gene complement(231427..232443)
/locus_tag="SMa0429"
/db_xref="GeneID:1235046"
CDS complement(231427..232443)
/locus_tag="SMa0429"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435472.1"
/db_xref="GI:16262679"
/db_xref="GeneID:1235046"
/translation="MADRFLALSKDDRREALAVAAARTGRPIHLLEKDVWVVWTLETL
YSSKLGEHLVFKGGTSLSKAYGAIRRFSEDIDLTYDIRALAPDLVGDNDEALPKTRSE
EKRWTSEVRKRLPVWVAESVEPVIAAAVRGQSLPARIRIEGDTLYLDYEAVSSGSGYV
APSVMLEFGARSTGEPASIRDVGCDAAGHVDGVEFPKASPRAMHAERTFWEKATAIHV
FCLQERPRGDRFARHWHDVVRLDDAGFADKAFAERQLANAVAKHKSMFFAEKAADRSP
IDYAAAGHLVLTPSGDGLRALSEDYAKMVDDGLLLGDSEPFEQLIERCALIQERANKV
GTTE"
misc_feature complement(231475..232329)
/locus_tag="SMa0429"
/note="Nucleotidyl transferase of unknown function
(DUF1814); Region: DUF1814; pfam08843"
/db_xref="CDD:220039"
gene complement(232436..233029)
/locus_tag="SMa0431"
/db_xref="GeneID:1235047"
CDS complement(232436..233029)
/locus_tag="SMa0431"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435473.1"
/db_xref="GI:16262680"
/db_xref="GeneID:1235047"
/translation="MQNLTSQILGYAEQMPEGSPLSAKSLLHLGNRAAVDQALSRLTE
RGELIRAGRGIYMRPVKSRFGSRPPTVEQAVEAVAQQRGEIIVSSGAAAANALGLTTQ
VPVRSVYLTSGRSRTMNLGKQSVELKHVPRWQLALADRPAGVAVRALAWLGPEKAEEA
LSRIKRKLPPAEFGELVAAAPQFPTWLARSVGRAAHG"
misc_feature complement(<232853..232924)
/locus_tag="SMa0431"
/note="Domain of unknown function (DUF4095); Region:
DUF4095; pfam13338"
/db_xref="CDD:222054"
gene 233560..234030
/locus_tag="SMa0433"
/db_xref="GeneID:1235048"
CDS 233560..234030
/locus_tag="SMa0433"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435474.1"
/db_xref="GI:16262681"
/db_xref="GeneID:1235048"
/translation="MTKVTVIAHSPGAPVSRRALLDAIRNQASWAGKTRLQLFAPAHI
GAYLNKVRKELGIASRLIASLTALTKFGVLSLDGLEPGSPFLTQLMEDSSKELANGWD
AQVKARQVIFGDGENVVMVQRFLEDPPHTVWPGHGHCSVCRCDKTAPAIASYLA"
gene complement(234248..234631)
/locus_tag="SMa0436"
/db_xref="GeneID:1235049"
CDS complement(234248..234631)
/locus_tag="SMa0436"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435475.1"
/db_xref="GI:16262682"
/db_xref="GeneID:1235049"
/translation="MSTTPTVHFEAASTLAVVVSSHEPLLFLSDDLKIIAASASFCRA
FDIDPTSVPGKKLGELGQGEWAMPKLESLLKATASRSADIQAYEIDLKRPNRGTRQLV
VNAQTLDDGDVEHIRLLVAVTDMER"
misc_feature complement(234257..234571)
/locus_tag="SMa0436"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature complement(234257..234559)
/locus_tag="SMa0436"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:222120"
misc_feature complement(order(234344..234346,234359..234361,
234443..234454,234491..234493,234509..234511,
234521..234523))
/locus_tag="SMa0436"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature complement(order(234317..234319,234323..234325,
234410..234415,234422..234424,234449..234451,
234461..234463))
/locus_tag="SMa0436"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
gene 236016..236381
/locus_tag="SMa5022"
/db_xref="GeneID:6435260"
CDS 236016..236381
/locus_tag="SMa5022"
/note="Amino-terminus has similarity to conserved
hypothetical proteins of COG5579; Carboxy-terminus has
similarity to a short stretch of amino acids found in
eukaryotic-type DNA primases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000338.1"
/db_xref="GI:193782569"
/db_xref="GeneID:6435260"
/translation="MAENDPFELSRLVAAQDLVFETVLAELRAGRKETRWMWFIFPQL
RALGRSPTANFYGIGSIEEARAYLPWTQVQSNLDPKRFTVRTVPALLAKAGAWEEYYD
GQRPHEQAIKRLGKHKAAA"
misc_feature 236025..>236225
/locus_tag="SMa5022"
/note="Protein of unknown function (DUF1810); Region:
DUF1810; cl02370"
/db_xref="CDD:243008"
misc_feature <236217..236369
/locus_tag="SMa5022"
/note="AE_Prim_S_like: primase domain similar to that
found in the small subunit of archaeal and eukaryotic
(A/E) DNA primases. The replication machineries of A/Es
are distinct from that of bacteria. Primases are
DNA-dependent RNA polymerases which synthesis...; Region:
AE_Prim_S_like; cl01287"
/db_xref="CDD:242415"
gene 236378..236794
/locus_tag="SMa5023"
/db_xref="GeneID:6435261"
CDS 236378..236794
/locus_tag="SMa5023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000339.1"
/db_xref="GI:193782570"
/db_xref="GeneID:6435261"
/translation="MTFESPGGDHTKRMKKSNIPIEQLTRLRRIRGLARLMDTALRIP
GTRMSLGADSVLGLIPGVGDFAAAAVSLIIVNEARRLGVPNDKLVKMLVNVGFDTVAG
SVPVLGDVFDVYFKSNRRNLQLVLDHFGLDHADLDR"
misc_feature 236453..236764
/locus_tag="SMa5023"
/note="Domain of unknown function (DUF4112); Region:
DUF4112; pfam13430"
/db_xref="CDD:205608"
repeat_region complement(236849..238167)
/standard_name="ISRm1"
/note="SMa3003; predicted by homology"
/rpt_family="ISRm1"
gene complement(236878..237708)
/locus_tag="SMa0444"
/db_xref="GeneID:1235052"
CDS complement(236878..237708)
/locus_tag="SMa0444"
/function="Elements of external origin; Transposon-related
functions"
/note="glimmer prediction; integrase core domain, PF00665;
identical to hypothetical protein 2 from R. meliloti ISRm1
(accession S37716)"
/codon_start=1
/transl_table=11
/product="TRm1b transposase"
/protein_id="NP_435478.2"
/db_xref="GI:193782571"
/db_xref="GeneID:1235052"
/translation="MKTVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAV
IADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRVMKLHNLLLVRHTGAVDDRLHEG
QVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLV
ITAVENRFGRINMLSEPIEWLTDNGSCFVARDTASLLRDIGMEPCTTPVRSPQSNGMA
EAFVKTFKRDYVSVNPTPDAETVMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT
"
misc_feature complement(236887..237609)
/locus_tag="SMa0444"
/note="insertion element IS2 transposase InsD;
Provisional; Region: PRK14702"
/db_xref="CDD:237792"
misc_feature complement(237436..237609)
/locus_tag="SMa0444"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:222019"
misc_feature complement(237028..237381)
/locus_tag="SMa0444"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature complement(236911..237111)
/locus_tag="SMa0444"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
gene complement(237705..238097)
/locus_tag="SMa0445"
/db_xref="GeneID:1235053"
CDS complement(237705..238097)
/locus_tag="SMa0445"
/function="Elements of external origin; Transposon-related
functions"
/note="glimmer prediction; transposase, PF01527; ISRm1;
start codon changed based on homology"
/codon_start=1
/transl_table=11
/product="TRm1a transposase"
/protein_id="NP_435479.1"
/db_xref="GI:16262686"
/db_xref="GeneID:1235053"
/translation="MTSSNFKMEVLSGPERRRRWSTAEKLAIIHETYEADATVSIVAR
RHGIQPNQLFAWRKLASQGALTATAAEEEVVPASEYRALQAQVKELQRLLGKKTMESE
ILKEALEIAGSPKKHLLRSLSLPRGILG"
misc_feature complement(237723..238061)
/locus_tag="SMa0445"
/note="Transposase; Region: HTH_Tnp_1; cl17663"
/db_xref="CDD:248217"
misc_feature complement(237729..238061)
/locus_tag="SMa0445"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG2963"
/db_xref="CDD:225511"
gene 238528..239649
/locus_tag="SMa0447"
/db_xref="GeneID:1235054"
CDS 238528..239649
/locus_tag="SMa0447"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; domain of unknown function,
DUF20, PF01594"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435480.1"
/db_xref="GI:16262687"
/db_xref="GeneID:1235054"
/translation="MSMVTQGKLIGQLLAFGALGLLAIGCTLVLWPFLSAILWAAVIC
FSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLALLATTLADNISSLVAGVTHV
LEQGPPAPPDWVRGLPIAGEGLATYWEGLAHNAPAFTIELKKVIGPFADVALIGGTLF
GAGLLELALSIFIGFFLFLHGRRMTALTRQIAERVAGARARRLLSVVGVTVTGVVYGL
IGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGPPFVWGPVALWLFMQESVW
WGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIGGVLAFGLIGLFLGPTL
LAVAHSLFREWIAAELEERRQPPSSSTGRDQRSGPRQGG"
misc_feature 238612..239604
/locus_tag="SMa0447"
/note="Predicted permease, member of the PurR regulon
[General function prediction only]; Region: yhhT; COG0628"
/db_xref="CDD:223701"
gene complement(240025..240435)
/locus_tag="SMa0448"
/db_xref="GeneID:1235055"
CDS complement(240025..240435)
/locus_tag="SMa0448"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435481.1"
/db_xref="GI:16262688"
/db_xref="GeneID:1235055"
/translation="MVGLLTGLELMAILGVGPVVAAGWLAATAAGAVAGAVAGGAAGG
LIGALTDSGVDEEDAHVFAKGVRRGGTFVTARVDDTLAPEAQAILQDLNRVDPAARWG
VFAQEEWTRFDENADPYTLEAVPLYDAVTASKDW"
gene 240985..241272
/locus_tag="SMa0450"
/db_xref="GeneID:1235056"
CDS 240985..241272
/locus_tag="SMa0450"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435482.1"
/db_xref="GI:16262689"
/db_xref="GeneID:1235056"
/translation="MVTEMSSEKMRKLIQDYQRDIAAYLAPESGISERQLLQQLASRL
DGQQAQDALGNGWQGWLPDDEDPAAADDGSPAPTRWWTEPEFFGTMWKLRS"
gene 243155..243562
/locus_tag="SMa0453"
/db_xref="GeneID:1235058"
CDS 243155..243562
/locus_tag="SMa0453"
/function="Elements of external origin; Plasmid-related
functions"
/note="glimmer prediction; homologous to possible plasmid
stability locus Yle from Agrobacterium tumefaciens
octopine-type Ti plasmid"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435484.1"
/db_xref="GI:16262691"
/db_xref="GeneID:1235058"
/translation="MYLVDTNIVSEARRGTPQAVSWLRSVDPLSIHLSALSLGEIMRG
IALKQRSDPKTAAHLTEWLRKLRHDHGDRILPITDQIAVEWGRIAAIRPRGDIDGLIA
ATAIVHDLILVTRNVKDFEDTDASVINPWETSA"
misc_feature 243161..243526
/locus_tag="SMa0453"
/note="PIN domain of ribonucleases (toxins), VapC and
FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus
horikoshii protein PH0500, and other similar bacterial and
archaeal homologs; Region: PIN_VapC-FitB; cd09881"
/db_xref="CDD:189051"
misc_feature order(243164..243172,243179..243184,243188..243196,
243215..243217,243224..243226,243245..243247,
243257..243262,243266..243274,243278..243286,
243323..243325,243332..243334,243374..243376,
243380..243388,243401..243403,243407..243412,
243419..243424,243437..243439,243443..243448,
243452..243457,243512..243514)
/locus_tag="SMa0453"
/note="oligomeric interface; other site"
/db_xref="CDD:189051"
misc_feature order(243167..243169,243272..243274,243446..243448,
243500..243502)
/locus_tag="SMa0453"
/note="putative active site [active]"
/db_xref="CDD:189051"
misc_feature order(243257..243262,243269..243274,243278..243283,
243326..243331,243338..243340,243383..243385,
243398..243403,243407..243415,243419..243424,
243440..243445,243449..243451)
/locus_tag="SMa0453"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:189051"
repeat_region 245057..246355
/standard_name="ISRm3"
/note="SMa3004; predicted by homology"
/rpt_family="ISRm3"
gene 245116..246318
/locus_tag="SMa0461"
/db_xref="GeneID:1235060"
CDS 245116..246318
/locus_tag="SMa0461"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="TRm3 transposase"
/protein_id="NP_435486.1"
/db_xref="GI:16262693"
/db_xref="GeneID:1235060"
/translation="MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELD
DHLDVERLEGGPANRRNGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPDF
DDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYP
LVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLWIEQTEGAKFWLRVMNELK
NRGCQDILIAVVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPAL
RAIYRARDAEAGLKALEAFEEGYWGQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYT
TNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAV
IFGERFFN"
misc_feature 245122..246252
/locus_tag="SMa0461"
/note="Transposase, Mutator family; Region:
Transposase_mut; pfam00872"
/db_xref="CDD:216166"
misc_feature 245647..245889
/locus_tag="SMa0461"
/note="MULE transposase domain; Region: MULE; pfam10551"
/db_xref="CDD:220806"
gene complement(246386..248227)
/locus_tag="SMa0462"
/db_xref="GeneID:1235061"
CDS complement(246386..248227)
/locus_tag="SMa0462"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435487.1"
/db_xref="GI:16262694"
/db_xref="GeneID:1235061"
/translation="MVTKKKARAKQTPKRLDVMKATKNKAETANAAAFEIPEQAGKFL
RDTSIPQGFANPQPIVLAELQKRVTEMNLRPTVSLEQFLASANRIKPVDLPIEELSDD
VKESIPALKPEIRRFHGVKIPLYWFPFPWLSSVCSDRFGYMSSAATRAATKLPFNVAT
QALLGQLGNMMGDAGRDPNPASHNPADAGVSSLPAGFTYFAQFVDHDITFDVSSTLDA
DIDANTVNNMRSPALDLDSLYGRGPGLDPFLYVFPTSGPATAIKLHRGTNTPVGPGGP
SNNGNPSGMLQQTNWDVPRMQGTNTAVTGDPRNDENLIIVQFHHAMLRFHNAVVDLLL
AAAFAGDIFAEAKRIVTHHYQWAVVHDFLERICGVATVNNAIASVSAPIGSSFRMPVE
FAVAAYRFGHSMIRDTYWVNFNFPNATLGQVFEFNRIPRLPVFSNWVVDFNAFFDTGV
PVPVHNKARKIDSLMASGLESLPGFSGMMAILATRNLRRALALGLPSGQGMANSFGIA
PMTAAQLIFGLPPAEVAVLNASGGLLLNKTPLWYYVLREAAVLAGGNQLGAVGGRIVA
ETFVRILKRDASSYLNVAGGFTPILPSSTPGNFTVADLVAFVGVTQP"
misc_feature complement(246398..247816)
/locus_tag="SMa0462"
/note="Uncharacterized bacterial family of heme
peroxidases; Region: An_peroxidase_bacterial_1; cd09819"
/db_xref="CDD:188651"
misc_feature complement(order(246761..246763,246773..246775,
246782..246784,246821..246823,246956..246958,
247013..247015,247022..247024,247028..247036,
247043..247045,247292..247297))
/locus_tag="SMa0462"
/note="putative heme binding site [chemical binding];
other site"
/db_xref="CDD:188651"
misc_feature complement(order(246509..246511,246518..246523,
246530..246535,246545..246547,246557..246559,
247028..247030,247034..247036,247046..247048,
247100..247102,247112..247117,247124..247126))
/locus_tag="SMa0462"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:188651"
gene complement(248442..251618)
/gene="cyaI2"
/locus_tag="SMa0464"
/db_xref="GeneID:1235062"
CDS complement(248442..251618)
/gene="cyaI2"
/locus_tag="SMa0464"
/EC_number="4.6.1.1"
/function="Small molecule metabolism; Global functions"
/note="glimmer prediction; possible adenylate cyclase
domain"
/codon_start=1
/transl_table=11
/product="guanylate cyclase"
/protein_id="NP_435488.1"
/db_xref="GI:16262695"
/db_xref="GeneID:1235062"
/translation="MAVIRRPSRSLTPTEEIALARPEPPAEDVRKTITILIADIVDSS
RLSLTLDPEALRELFARYFDEMTSTIQRHGGVVDRYVGDEILAVFGVPTLHEDDALRA
VSAAVDMRDTLARLNHEFETGWGVQLAHRIGLNTGEVFTGIDRWGHRFLTGEAVRVAK
RLQEAAAANEILMGEATHKLVRHAVVVESSSPRAVKHGETFPAIIVLTVIARTTGFQR
RFDTPFVGRKRQLAMISTLLGDFVSNRTCHLLTVLGEAGVGKSRLVSEVAGNLAREMT
VAHGRCLPYGDGITYWLLADIVREIFRAGGGDSGKLSVAAIAEVLAGVDKAKLIAERI
AGLLGFGAGDPGTREETFWAVRRLFEVFARERPVVIVVEDLHWADPTLLDFIEHLVDF
SHGFPIMIVATARPELLDTRPGWGGGTPNATTIALEPLSEAESRDMVLNLLHRLPLSP
AVELMITRAVGGNPLFAEELVAMLVDEELLRRNEDCWVAREDLSELPVPSTIIALLAA
RLEGLTSQERAILTAAAVEGAVFHRSAVDELARPAPKALGDGLLSLVRRDLIRPEAPS
FVGEETYRFRHDMIREAAYRSLPKNARADLHERFASWLEITAKERLREFEEVVGYHLE
QAFQYRIALGPRGARAASLAARACERLEAAGRRALVRSDLSAAISLLERVSRLLLADD
PRRIALLAELSGALIESGRLDDAGRVLEEAGGLAGAAMDRRLAAHVRVQRQFLRLLHG
EEGGLEKAAQAAAEVIPVFEGFGDDLGLCRARRLEAWLFFNGARGEAAAAAWERAAAH
ARRAGNLHEYYEILTWIASSLWFGPTPAAEGIRRCEAMRAEVGESLESEAAILRQLAC
LNAVVGRFAIARELIAASNATYADLGLTLYVASSEHEAVVELLAGNPAAAERSARAAY
RALEEMGERAFRSTMAASLAVVILEQGRDEEAEDFAKLSAQLAASGDLVTQVRWRRVR
ARVLARRAEISAAEALAREALEIAEKTDFINDRADALVDLSHVLEASRRRDEAVAAAT
GAVHLYELKGNVVAAAATRLRLGKLVAM"
misc_feature complement(250962..251618)
/gene="cyaI2"
/locus_tag="SMa0464"
/note="Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms]; Region:
CyaA; COG2114"
/db_xref="CDD:225025"
misc_feature complement(251031..251525)
/gene="cyaI2"
/locus_tag="SMa0464"
/note="cyclase homology domain; Region: CHD; cd07302"
/db_xref="CDD:143636"
misc_feature complement(order(251031..251033,251136..251141,
251148..251153,251163..251165,251361..251363,
251370..251378,251382..251384,251487..251504,
251508..251510))
/gene="cyaI2"
/locus_tag="SMa0464"
/note="nucleotidyl binding site; other site"
/db_xref="CDD:143636"
misc_feature complement(order(251370..251372,251502..251504))
/gene="cyaI2"
/locus_tag="SMa0464"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143636"
misc_feature complement(order(251031..251033,251148..251150,
251157..251162,251190..251192,251199..251201,
251379..251384,251418..251420,251430..251432,
251439..251444,251451..251453,251487..251489))
/gene="cyaI2"
/locus_tag="SMa0464"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143636"
misc_feature complement(248445..250952)
/gene="cyaI2"
/locus_tag="SMa0464"
/note="Predicted ATPase [General function prediction
only]; Region: COG3899"
/db_xref="CDD:226415"
misc_feature complement(250416..250952)
/gene="cyaI2"
/locus_tag="SMa0464"
/note="AAA ATPase domain; Region: AAA_16; pfam13191"
/db_xref="CDD:221970"
gene 252021..253625
/locus_tag="SMa0466"
/db_xref="GeneID:1235063"
CDS 252021..253625
/locus_tag="SMa0466"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; bacterial extracellular
solute-binding protein, family 5, PF00496"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435489.1"
/db_xref="GI:16262696"
/db_xref="GeneID:1235063"
/translation="MAIEFTRRSILAAGMAHAAFVSVTGTFVIARAAKAAEQIELVTW
ALPSIPDTLFIPHAWTTYTGAIMSLVQEGLLGFGEDLGLETALADRWEEVDPTTIKYH
LRGGVKFGDGSPLAADDIVATFKYHMSPDSPSQLASFYNSVATVEATAPDEVTVKLKA
PNVQFAFTPAHMAGFVFKKEQLADKNIGTPEALPLGTGAYKLVEFVPTDRVILEARDD
YSGPKPAVKRITFKAIPDRPARLLAMQQGEIDGTFDLAISDIDQWKALGNVDVVAAPS
LGVYLLTLDHSAPPFDDIHVRRAVAYSVDRNGLVQALLKGNGEAATALNPPEIWSGVL
PPDEVRAFYATLLPNYAFDLNKAKAELAQSNHPDGFDVTIPASTADPYMVNILQSVTE
NLKQIGIRAHIQESDNNTWFTNYVTHDKLGMQIMAYYPDFADAANYPSLFFSSANAEK
GGMNGSNFNNREVDAKLKIANENADPKARADALKKVFTIANEEVAVVPIFWPASAMAI
NNKYKLTGYNAFWYSIPWAMRGFGPK"
misc_feature 252021..253604
/locus_tag="SMa0466"
/note="ABC-type dipeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
DdpA; COG0747"
/db_xref="CDD:223818"
misc_feature 252144..253559
/locus_tag="SMa0466"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cd00995"
/db_xref="CDD:173853"
gene 253863..254879
/locus_tag="SMa0467"
/db_xref="GeneID:1235064"
CDS 253863..254879
/locus_tag="SMa0467"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; start codon changed based on
homology"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435490.1"
/db_xref="GI:16262697"
/db_xref="GeneID:1235064"
/translation="MHRAAPSTGLTAISGGANGGSSLVVFITRRFAVTIPLLLIISFG
VFALIHIAPGDPVSSLLGARASDPATLAAIRARYHLDDSLLVQYGTWLSQVIRGDLGV
SILGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGALAAFRRGTGLDRTVVMFSV
FGISSPAFVTGIFFLYVFGVLLHWFPTFGAGTGFLDRAWHLALPALALAASTMAIVVK
ITRAAVIEELARDYVTFARARGVSSRRILLAYVLRNSLIPVITAAGLIVIGILAGAIY
VEVTFSLPGLGALMIDAVQKRDIPTIQGITLLFSAFVVLVNLAVDVIYTLIDPRIRFG
RVGS"
misc_feature 253938..254867
/locus_tag="SMa0467"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 254316..254858
/locus_tag="SMa0467"
/note="Binding-protein-dependent transport system inner
membrane component; Region: BPD_transp_1; pfam00528"
/db_xref="CDD:144205"
gene 254921..255718
/locus_tag="SMa0469"
/db_xref="GeneID:1235065"
CDS 254921..255718
/locus_tag="SMa0469"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; start codon changed based on
codon usage and homology; binding-protein-dependent
transport systems inner membrane component motif, PF00528"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435491.2"
/db_xref="GI:193782572"
/db_xref="GeneID:1235065"
/translation="MPVPVVVLFAALIIAAVVICAVLGERIAPDSPFLQRLGVGDTPP
SQDHIAGTDLLGRDVLSRVIYGARTALAGPVVVAAGAFAISTLLGLLSGYLGGLVDSA
IMRWVDFMFALPGPLVAIVVVGVVGGGYWTAVLVLVVLFTAPDTRIVRSAVLEQRPLA
YIDAARTLGISKTRILFVHILPNIAPIILAYVVLDFAFALVNLAGLSFLGLGVEPGTP
DWGRMLFENRTILFSNPAALLLPAGMIILTAVSMNLVGDWLFERFSK"
misc_feature 254999..255709
/locus_tag="SMa0469"
/note="nickel ABC transporter, permease subunit NikC;
Region: nickel_nikC; TIGR02790"
/db_xref="CDD:131837"
misc_feature 255215..255664
/locus_tag="SMa0469"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(255227..255238,255242..255271,255278..255283,
255287..255289,255338..255343,255347..255349,
255353..255355,255362..255367,255371..255373,
255383..255388,255395..255397,255446..255448,
255488..255493,255500..255502,255521..255532,
255539..255544,255584..255589,255617..255622,
255629..255634,255638..255643,255650..255655,
255662..255664)
/locus_tag="SMa0469"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(255245..255289,255521..255538)
/locus_tag="SMa0469"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(255287..255289,255323..255325,255539..255541,
255578..255580,255587..255589,255617..255619)
/locus_tag="SMa0469"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(255398..255436,255452..255457,255467..255469)
/locus_tag="SMa0469"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 255727..257562
/locus_tag="SMa0470"
/db_xref="GeneID:1235066"
CDS 255727..257562
/locus_tag="SMa0470"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; ABC transporter PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435492.2"
/db_xref="GI:193782573"
/db_xref="GeneID:1235066"
/translation="MAREGQESPLLKVEGLAISHGDVPITLPLEIVVERGETIAIVGE
SGSGKSLTARAIVGILPPGINAKGAVTLDGVPLMRLAERELRTIRGSRVSMLMQDPFT
MLNPLMRSGDHIDEMLRDRPEFASRAVRADEVKRRLAEVGIVDEDVARRMPFQLSGGM
CQRVALAAALARDPELLIADEPSTALDVTTQAEIIKLLRRIQRERNMAVILITHNLRL
AFSTCQRIYVLYAGSMLEVGDAAAVERQPFHPYTLGLLLSEPPVDIRVPRLVAIRGSV
PRAADVIDSCGFADRCEWAKQICRAGKPSLAARDASRFTACIRQDEIQGELDALRSAT
LSATPETPRRGGTAGALVHVDALVKTFAGRRGRPICAIRDVSLHIMAGESVGLVGESG
SGKTTIGRCLVGLETPTDGDIRINGIAAADFGAMAKADRDRVRRTIQMIFQDPYSTLN
PKHSVGQALREALGASAGAPSPAPQERIASLLAEVGLSAAYATRRPASLSGGERQRVA
IARALAVKPAILVCDEPVSALDVSVQAQVLNLFRRLQVEHELSYLFITHDLAVVRQIA
ERIYVLYLGEIVEEGPTERVISNPQHPYTRRLIESIVRSAIQRAP"
misc_feature 255736..257532
/locus_tag="SMa0470"
/note="glutathione transporter ATP-binding protein;
Provisional; Region: PRK10261"
/db_xref="CDD:182342"
misc_feature 255754..256440
/locus_tag="SMa0470"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 255853..255876
/locus_tag="SMa0470"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(255862..255867,255871..255879,256018..256020,
256264..256269,256366..256368)
/locus_tag="SMa0470"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 256009..256020
/locus_tag="SMa0470"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 256192..256221
/locus_tag="SMa0470"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 256252..256269
/locus_tag="SMa0470"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 256276..256287
/locus_tag="SMa0470"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 256354..256374
/locus_tag="SMa0470"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 256432..256644
/locus_tag="SMa0470"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
misc_feature 256777..257469
/locus_tag="SMa0470"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 256891..256914
/locus_tag="SMa0470"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(256900..256905,256909..256917,257053..257055,
257293..257298,257395..257397)
/locus_tag="SMa0470"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 257044..257055
/locus_tag="SMa0470"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 257221..257250
/locus_tag="SMa0470"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 257281..257298
/locus_tag="SMa0470"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 257305..257316
/locus_tag="SMa0470"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 257383..257403
/locus_tag="SMa0470"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 257458..>257532
/locus_tag="SMa0470"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
gene 258225..258533
/locus_tag="SMa0471"
/db_xref="GeneID:1235067"
CDS 258225..258533
/locus_tag="SMa0471"
/function="Miscellaneous; Hypothetical/Partial homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435493.1"
/db_xref="GI:16262700"
/db_xref="GeneID:1235067"
/translation="MASNALVQTRIDAEVKERATAVLENMGLTVSDAVRILLTRTANE
GALPLELFSHSEAHDAWFRAKVLRALEDTRPDVDDADADAHFRERRAAALRKAAAGDR
"
misc_feature 258225..>258449
/locus_tag="SMa0471"
/note="DNA-damage-inducible protein J [DNA replication,
recombination, and repair]; Region: RelB; COG3077"
/db_xref="CDD:225619"
gene 258530..258823
/locus_tag="SMa0473"
/db_xref="GeneID:1235068"
CDS 258530..258823
/locus_tag="SMa0473"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435494.1"
/db_xref="GI:16262701"
/db_xref="GeneID:1235068"
/translation="MRLVWARYALDDRDTIFSYIERENPRAAVHVDEEIVSAVRRLLD
FPESGRPGRIAGTRELVIPRTPYIAAYMVMEDRIRILRVLHGAQKWPSELDDG"
misc_feature 258530..258817
/locus_tag="SMa0473"
/note="Plasmid stabilization system protein [General
function prediction only]; Region: ParE; COG3668"
/db_xref="CDD:226194"
repeat_region 258869..260541
/standard_name="ISRm17"
/note="SMa4001; predicted by homology"
/rpt_family="ISRm17"
gene 259012..259911
/locus_tag="SMa0475"
/db_xref="GeneID:1235069"
CDS 259012..259911
/locus_tag="SMa0475"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="TRm17a transposase"
/protein_id="NP_435495.1"
/db_xref="GI:16262702"
/db_xref="GeneID:1235069"
/translation="MRQERTVQGSIFDLFAEHEIGRELEAMSQWLDAHRDLLNLVTSD
LRRQGVTETGRQGLPSEAVLRCALLKQYRQLSYEELAFHLEDSASFRAFARLPWGWSP
KKSVLHKTISAIRADTWEAVNKMLLASARQERLESGRVVRVDSTVTAALIHEPSDSSL
LWDCVRVMVRLLQQADSLGSTIPWHDHCRAAKKRARVIEYTRGRPKRVQHYRALLRIA
RNTLDYLQQAAAQLPLAAGPAGKLWQAQVRHYQPLITQIIAQTERRVLAGEAVPAGEK
LVSLFEPHADIIVKGSRERRLRT"
misc_feature 259012..259593
/locus_tag="SMa0475"
/note="Transposase and inactivated derivatives, IS5 family
[DNA replication, recombination, and repair]; Region:
COG3039"
/db_xref="CDD:32853"
misc_feature 259171..259392
/locus_tag="SMa0475"
/note="Transposase domain (DUF772); Region: DUF772;
pfam05598"
/db_xref="CDD:203284"
gene 259996..260349
/locus_tag="SMa0476"
/db_xref="GeneID:1235070"
CDS 259996..260349
/locus_tag="SMa0476"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="TRm17b transposase"
/protein_id="NP_435496.1"
/db_xref="GI:16262703"
/db_xref="GeneID:1235070"
/translation="MPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFH
KKSGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSS
VVAYNLALFARLRPT"
misc_feature <260017..260346
/locus_tag="SMa0476"
/note="Transposase and inactivated derivatives, IS5 family
[DNA replication, recombination, and repair]; Region:
COG3039"
/db_xref="CDD:32853"
gene complement(260764..261969)
/locus_tag="SMa0478"
/db_xref="GeneID:1235071"
CDS complement(260764..261969)
/locus_tag="SMa0478"
/EC_number="1.2.2.1"
/function="Small molecule metabolism; Degradation; carbon
compounds"
/note="Catalyzes the reversible two-electron oxidation of
formate to carbon dioxide. It allows the assimilation of
carbon dioxide and provides energy for growth through
oxidative phosphorylation coupled to the reduction of
oxygen, nitrate, sulphate or fumarate"
/codon_start=1
/transl_table=11
/product="formate dehydrogenase"
/protein_id="NP_435497.1"
/db_xref="GI:16262704"
/db_xref="GeneID:1235071"
/translation="MEMAKVACVLYDDPVDGYPTAYARDGLPTLERYPGGQTLPTPKA
IDFEPGALLGSVSGELGLRKFLEGQGHTLVVTSDKDGPDSVFERELVDAEIVISQPFW
PAYLTAERIVKAARLKLAITAGIGSDHVDLQAAIDRGITVAEVTYCNSISVSEHVVMM
ILSLARNYIPSYQWVVKGGWNVADCVARSYDIEGMDIGTVGAGRIGTAVLRRLKPFDV
KLHYTDRHRLPDEVAKELGVTFHQTAAEMVPVCDVVTINAPLHPETENLFNEAMIGKM
KRGAYLVNTARGKICNRDAVARALESGQLAGYAGDVWFPQPAPKDHPWRSMPHHGMTP
HISGSSLSAQARYAAGTREILECWFEGRPIREEYLIVSGGKLAGAGAHSYSAGDATRG
SEEAAHFKT"
misc_feature complement(260809..261963)
/locus_tag="SMa0478"
/note="formate dehydrogenase; Provisional; Region:
PRK07574"
/db_xref="CDD:181041"
misc_feature complement(260830..261960)
/locus_tag="SMa0478"
/note="NAD-dependent Formate Dehydrogenase (FDH); Region:
FDH; cd05302"
/db_xref="CDD:240627"
misc_feature complement(order(260932..260934,260938..260940,
260944..260955,260959..260982,260992..260997,
261010..261012,261016..261024,261031..261033,
261322..261327,261334..261339,261385..261387,
261391..261405,261409..261438,261442..261459,
261463..261468,261472..261474,261481..261486,
261493..261498,261502..261507,261514..261519,
261814..261816,261931..261939))
/locus_tag="SMa0478"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:240627"
misc_feature complement(order(261523..261525,261595..261600,
261667..261672))
/locus_tag="SMa0478"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:240627"
misc_feature complement(order(260956..260961,260965..260967,
261034..261039,261109..261117,261178..261180,
261187..261189,261193..261201,261292..261300,
261355..261363,261367..261369,261511..261513,
261520..261525,261595..261597,261667..261669))
/locus_tag="SMa0478"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:240627"
misc_feature complement(order(260965..260967,261022..261024,
261109..261111))
/locus_tag="SMa0478"
/note="catalytic site [active]"
/db_xref="CDD:240627"
gene 262378..262674
/locus_tag="SMa5024"
/db_xref="GeneID:6435262"
CDS 262378..262674
/locus_tag="SMa5024"
/note="Has similarity to the central region of a group of
conserved hypothetical proteins, including S; meliloti
SMa2147, which contain a region with weak similarity to
ParB-like nuclease domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000340.1"
/db_xref="GI:193782574"
/db_xref="GeneID:6435262"
/translation="MVFADTRSAGTWYLLDGHLRLEALKELGFAKVECLVATDDDTYT
YNKRVNRLAPIEEHRMIARAIERGVSSADIADAWGFRWSPSFAGSVCWKASAPR"
misc_feature <262396..262503
/locus_tag="SMa5024"
/note="ParB-like nuclease domain; Region: ParBc; cl02129"
/db_xref="CDD:198658"
gene complement(263506..264432)
/locus_tag="SMa0483"
/db_xref="GeneID:1235074"
CDS complement(263506..264432)
/locus_tag="SMa0483"
/note="glimmer prediction; inositol monophosphatase,
PF00459"
/codon_start=1
/transl_table=11
/product="Phosphatase"
/protein_id="NP_435500.1"
/db_xref="GI:16262707"
/db_xref="GeneID:1235074"
/translation="MPPMQFLRARRSPADNRLSIGIAIPTCRRWTCSPAGGTVPPTTI
KGVQNSMFDPPLGEFASFAHDIADLARQTISSAAGVRREPIAKSDASPVTETDRAVEK
CLRERIADHFPDHGVLGEEFGAEGLGNEFVWVIDPIDGTKAFVAGLPVYGTLISLTRG
GTPILGLIDNPMTGDRWLGVSGQPTTLNNVPIRTASTTALATAFIANGNPDAFSPADK
SRVESLRRITRWCVYGGSCIAYGRVADGSVDISIDGGLDPYDYCALVPVITGAGGCIT
DWQGRPLTLNSGGLCVATATDLLHRHVLEILA"
misc_feature complement(263512..264276)
/locus_tag="SMa0483"
/note="Archaeal fructose-1,6-bisphosphatase and related
enzymes of inositol monophosphatase family [Carbohydrate
transport and metabolism]; Region: SuhB; COG0483"
/db_xref="CDD:223559"
misc_feature complement(263509..264258)
/locus_tag="SMa0483"
/note="Predominantly bacterial family of Mg++ dependend
phosphatases, related to inositol monophosphatases. These
enzymes may dephosphorylate fructose-1,6-bisphosphate,
inositol monophospate, 3'-phosphoadenosine-5'-phosphate,
or similar substrates; Region: Bacterial_IMPase_like_1;
cd01641"
/db_xref="CDD:238819"
misc_feature complement(order(263653..263658,264010..264012,
264016..264027,264070..264075,264142..264144))
/locus_tag="SMa0483"
/note="active site"
/db_xref="CDD:238819"
gene complement(264485..265939)
/gene="thrC2"
/locus_tag="SMa0485"
/db_xref="GeneID:1235075"
CDS complement(264485..265939)
/gene="thrC2"
/locus_tag="SMa0485"
/EC_number="4.2.3.1"
/function="Small molecule metabolism; Amino acid
biosynthesis; threonine"
/note="catalyzes the formation of L-threonine from
O-phospho-L-homoserine"
/codon_start=1
/transl_table=11
/product="threonine synthase"
/protein_id="NP_435501.1"
/db_xref="GI:16262708"
/db_xref="GeneID:1235075"
/translation="MIKYVSTTGGIEPVGFDEAVLQGFAADGGLFVPDRIPVIDQEQL
QAFSTLSFQDLAFELVSLYIDASIIPRQDLRRLIDNSYREFQRPDIVNLVPIRGNRDT
YVLELFHGPTQSFKDMAMGFLMQVVDYLLGQRRERLNIVLATTGDTGPAAAWAAAGKQ
RIDCWPLYPRGMISREQERQMTTLRADNVHPVGVENCPDGGDDLDLVVAELFSDEKLK
RTLALSSVNSINWCRVMTQTVHYFYSYYRAVERVGDPVVFSVPSGAFGNLFAGYLARS
MGLPVARFVCANNVNNALHTAFSRGVLPRHDLVQTPSSAIDIVAPYNFWRLLYFATNR
DTARIRQWMKDFAARREVVLDVETTKTIQGGFISASISDEETLATVRSVYEAEGHYLI
DPHTAVAVAAVEAVRDSLPAAAAIVCFATAHPAKFPDVIKRALDVEELPAAGHHPVID
EARDACEHLRICQLENLRSNLIGEMTRQVARRRG"
misc_feature complement(264518..265936)
/gene="thrC2"
/locus_tag="SMa0485"
/note="Threonine synthase [Amino acid transport and
metabolism]; Region: ThrC; COG0498"
/db_xref="CDD:223572"
misc_feature complement(264533..265933)
/gene="thrC2"
/locus_tag="SMa0485"
/note="Threonine synthase catalyzes the final step of
threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic phosphate
is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD
includes members from higher plants; Region: Thr-synth_2;
cd01560"
/db_xref="CDD:107203"
misc_feature complement(order(264677..264679,265148..265153,
265592..265594))
/gene="thrC2"
/locus_tag="SMa0485"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107203"
misc_feature complement(265592..265594)
/gene="thrC2"
/locus_tag="SMa0485"
/note="catalytic residue [active]"
/db_xref="CDD:107203"
gene complement(266004..266954)
/locus_tag="SMa0486"
/db_xref="GeneID:1235076"
CDS complement(266004..266954)
/locus_tag="SMa0486"
/note="catalyzes the formation of L-proline from
L-ornithine"
/codon_start=1
/transl_table=11
/product="ornithine cyclodeaminase"
/protein_id="NP_435502.1"
/db_xref="GI:16262709"
/db_xref="GeneID:1235076"
/translation="MTKVFGIEEIRAATASMDLTSVMEAGFVAYSDGKVVVPPVGELL
FEEPPGDTHIKYGYIRDDRVFVIKIASGFYGNAALGLPSSSGLMLVFSQKTGFLESVL
LDEGYLTNVRTALAGRIAARYLAPKEVKAIGVFGTGTMARMQVTYLSTETDCQNIVAW
GRSDDSLRRYCDDMAALGYHVTTTRDAREVAEACNLIIMTTPSTKPLLMASQLQPGTH
ITAMGSDTPEKQELDSLILARADIVVADSLEQCLSRGEIFHAVRAGHIAAAQVRELGG
QIRAGTRVRTSQDQITVADLTGVAVQDIQIAKAVCERLSS"
misc_feature complement(266013..266954)
/locus_tag="SMa0486"
/note="Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism]; Region:
COG2423"
/db_xref="CDD:225280"
misc_feature complement(266007..266951)
/locus_tag="SMa0486"
/note="ornithine cyclodeaminase; Validated; Region:
PRK06823"
/db_xref="CDD:136070"
gene complement(267102..267869)
/locus_tag="SMa0489"
/db_xref="GeneID:1235077"
CDS complement(267102..267869)
/locus_tag="SMa0489"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; ABC transporter family,
PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435503.1"
/db_xref="GI:16262710"
/db_xref="GeneID:1235077"
/translation="MIEATFMNKPNDTMIQLIGVGKRFGQFEALKQVSLEVRRGEKIV
LCGPSGSGKSTLIRCINRMEEHTSGRIIIDGRELTDRTKDINAVRREVGMVFQSFNLF
PHMTILKNLTIAQRLVRKTPEKEAKEVAMHYLKRVKIPEQASKYPVQLSGGQQQRVAI
ARALCMKPQIMLFDEPTSALDPEMISEVLDVMVDLARDGMTMICVTHEMGFARSVADR
VMFMDGGQLIEEGDPETFFANPRNERTALFLRQILRH"
misc_feature complement(267111..267833)
/locus_tag="SMa0489"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:224051"
misc_feature complement(267189..267827)
/locus_tag="SMa0489"
/note="ATP-binding cassette domain of the histidine and
glutamine transporters; Region: ABC_HisP_GlnQ; cd03262"
/db_xref="CDD:213229"
misc_feature complement(267708..267731)
/locus_tag="SMa0489"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213229"
misc_feature complement(order(267249..267251,267345..267350,
267579..267581,267705..267713,267717..267722))
/locus_tag="SMa0489"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213229"
misc_feature complement(267579..267590)
/locus_tag="SMa0489"
/note="Q-loop/lid; other site"
/db_xref="CDD:213229"
misc_feature complement(267393..267422)
/locus_tag="SMa0489"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213229"
misc_feature complement(267345..267362)
/locus_tag="SMa0489"
/note="Walker B; other site"
/db_xref="CDD:213229"
misc_feature complement(267327..267338)
/locus_tag="SMa0489"
/note="D-loop; other site"
/db_xref="CDD:213229"
misc_feature complement(267243..267263)
/locus_tag="SMa0489"
/note="H-loop/switch region; other site"
/db_xref="CDD:213229"
gene complement(267881..268564)
/locus_tag="SMa0492"
/db_xref="GeneID:1235078"
CDS complement(267881..268564)
/locus_tag="SMa0492"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; binding-protein-dependent
transpo"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435504.1"
/db_xref="GI:16262711"
/db_xref="GeneID:1235078"
/translation="MNIGIVFDAIPRMLGGIVMTFQLLLLSLAIGTMIAVLLLLMRIS
GRWWLSWPAQFYTYVFRGTPILVQIFIVYYGLPQFEWIRESIFWPILRDPFGCAILAL
SLNTGAYLSEIFRGGVLAVERGLLEAGAALGMSATHRFIYITTPLAIRIALPAYGNEV
ISLMKSTALASTITLVDMTGIGRTIVAETFAPYQVFLSLAIVYVAITWIIQRSVKRLE
VYLGRSTAR"
misc_feature complement(267884..268528)
/locus_tag="SMa0492"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:226670"
misc_feature complement(267944..268516)
/locus_tag="SMa0492"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(267944..267946,267953..267958,
267962..267967,267974..267979,268007..268012,
268049..268054,268061..268072,268091..268093,
268100..268105,268145..268147,268196..268198,
268205..268210,268220..268222,268226..268231,
268238..268240,268244..268246,268250..268255,
268346..268348,268352..268357,268364..268393,
268397..268408,268436..268438,268451..268456,
268463..268468))
/locus_tag="SMa0492"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(268055..268072,268346..268390))
/locus_tag="SMa0492"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(267977..267979,268007..268009,
268016..268018,268052..268054,268268..268270,
268346..268348))
/locus_tag="SMa0492"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(268124..268126,268136..268141,
268157..268195))
/locus_tag="SMa0492"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(268561..269259)
/locus_tag="SMa0493"
/db_xref="GeneID:1235079"
CDS complement(268561..269259)
/locus_tag="SMa0493"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; binding-protein-dependent
transport systems inner membrane component, PFam00528;
similar to OccQ, octopine transport binding protein, also
to arginine and histidine transport binding proteins"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435505.1"
/db_xref="GI:16262712"
/db_xref="GeneID:1235079"
/translation="MEALNGWWDDYLLASVTVAKVFVCSLILMVIFGLLGASAKLSSN
RLANAVGNAYTVFFRGTPEILVILLLYFGSAVSLTTIARVFDPSVAFVDIPPFWAGSI
AIALVVGSYATETFRGAFNGVKSGSIEAARALGMNGLQTFFYIRIPEMWRIALPPFGN
HMLSLIKDTALISIIGLNETLFVAKQAASTTGKPFTMYIVVGLIYLGFSTAITISVLL
LEALANRHIQRRPS"
misc_feature complement(268570..269256)
/locus_tag="SMa0493"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:226670"
misc_feature complement(268618..269193)
/locus_tag="SMa0493"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(268618..268623,268630..268635,
268642..268647,268651..268656,268663..268668,
268696..268701,268738..268743,268750..268761,
268780..268782,268789..268794,268834..268836,
268885..268887,268894..268899,268909..268911,
268915..268920,268927..268929,268933..268935,
268939..268944,269047..269049,269053..269058,
269065..269094,269098..269109,269137..269139,
269152..269157,269164..269169))
/locus_tag="SMa0493"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(268744..268761,269047..269091))
/locus_tag="SMa0493"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(268666..268668,268696..268698,
268705..268707,268741..268743,268957..268959,
269047..269049))
/locus_tag="SMa0493"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(268813..268815,268825..268830,
268846..268884))
/locus_tag="SMa0493"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(269299..270117)
/locus_tag="SMa0495"
/db_xref="GeneID:1235080"
CDS complement(269299..270117)
/locus_tag="SMa0495"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; bacterial extracellular
solute-binding protein, family 3, PF00497"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435506.1"
/db_xref="GI:16262713"
/db_xref="GeneID:1235080"
/translation="MNAMKNWQTSLTGLITAVLLSAAPANADTLRVGMECTYAPFNYR
TSDGKLEGYDVDVAKGISEIIGVDFEYVCQEWDGMIPALLANKFDLIIASMSITDKRK
EQIDFSSPYRNSVGRIVGPVGKDLKLFDDKGQPVVGNFDGLRIGVERASTYFEWFSAK
LPKADLVLYDSNEAMYLDLKNGRVDVIMTNPMKAHLSFLSGEGKGKYEFIGPEVNEPK
FFGPGVGVGLRKGNDELRDKISAAIRKLIREGKLKEYALKIFPFQIHDDAWAEE"
misc_feature complement(269335..270030)
/locus_tag="SMa0495"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:215950"
misc_feature complement(269356..270030)
/locus_tag="SMa0495"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature complement(order(269548..269550,269662..269664,
269815..269817,269890..269892,270004..270006))
/locus_tag="SMa0495"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature complement(order(269569..269571,269587..269589,
269599..269601))
/locus_tag="SMa0495"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature complement(269443..269460)
/locus_tag="SMa0495"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene 270311..270979
/locus_tag="SMa0496"
/db_xref="GeneID:1235081"
CDS 270311..270979
/locus_tag="SMa0496"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435507.1"
/db_xref="GI:16262714"
/db_xref="GeneID:1235081"
/translation="MKKKDQELGKGIGPELSPFVPVCDAIANLFAPFAEVVLHDMASA
SVVYIAGNFSKREFGDPSNLEEIDFKPADVLIGPYEKTNWDGRRIKSISSVLRTASGK
EVGVLCINVDVSVFENILLTLQTFVSLPATAGKLDSLFRDDWFERINSYIRHWTTSRG
LNISDLSRAQKKELVQALADDGAFSGKNAAGYICRLLGMGRATVYNYLNGDAAKVAGG
NSKQ"
misc_feature 270326..270967
/locus_tag="SMa0496"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2964"
/db_xref="CDD:32784"
misc_feature 270356..270685
/locus_tag="SMa0496"
/note="YheO-like PAS domain; Region: PAS_6; pfam08348"
/db_xref="CDD:116929"
misc_feature 270746..270937
/locus_tag="SMa0496"
/note="HTH domain; Region: HTH_22; pfam13309"
/db_xref="CDD:205489"
gene complement(271057..271956)
/locus_tag="SMa0498"
/db_xref="GeneID:1235082"
CDS complement(271057..271956)
/locus_tag="SMa0498"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435508.1"
/db_xref="GI:16262715"
/db_xref="GeneID:1235082"
/translation="MTLSFSALESFYWVSQLRSFNAAANKLNVSQPTVSYRIRELEER
LGVSLFVRQRRQLVLTSEGEALKHYAESMIAIARDIESNIKTRNTRLPTLRVGVIDSF
AAVCLPSLLDELDIRFAGARIAATVDTSHKLADQLSEGLLDIAVLSTPPSHDNVALEL
LGRQSVDWIASHKLGLPQTIVSDEELLRQRIFATPAPSNLHSLTTGFLAATAGAGLRL
NVCNSLGTILNLVESGTGISILPSRLLQEQIRHGTIQVLKTRTTLPLQEVFIGTNKGA
IVRALPQVSQMIRKVSASVGFCV"
misc_feature complement(271765..271944)
/locus_tag="SMa0498"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(271081..271938)
/locus_tag="SMa0498"
/note="DNA-binding transcriptional activator AllS;
Provisional; Region: PRK10094"
/db_xref="CDD:182237"
misc_feature complement(271084..271680)
/locus_tag="SMa0498"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature complement(order(271258..271263,271267..271272,
271288..271305,271576..271596,271600..271602,
271612..271614,271621..271626,271630..271635))
/locus_tag="SMa0498"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 272059..272691
/locus_tag="SMa0499"
/db_xref="GeneID:1235083"
CDS 272059..272691
/locus_tag="SMa0499"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435509.1"
/db_xref="GI:16262716"
/db_xref="GeneID:1235083"
/translation="MHKTISREHILEDLPEIAEIQSDDLREKVVDAWVFALERSSFDR
VVDIPGEGSPNVFALKRGTQDAHLRGVTRLALAIYDEFARTYPEARVDRDIILAGGLC
HDIGKTWEFDPINLKRWRERGDRYGEPSFRHSAYGTHVCLSVGLPEEIGHICMGHSLE
GAHIGHSTECYIIRQADHAWWHVAAALDLCHPETIGFAGPNLRVRPIGMQ"
misc_feature <272059..272688
/locus_tag="SMa0499"
/note="Predicted HD-superfamily hydrolase [General
function prediction only]; Region: COG3481"
/db_xref="CDD:226012"
misc_feature 272257..>272517
/locus_tag="SMa0499"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature order(272257..272259,272365..272370)
/locus_tag="SMa0499"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 272368..272370
/locus_tag="SMa0499"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
gene 272734..273420
/locus_tag="SMa0501"
/db_xref="GeneID:1235084"
CDS 272734..273420
/locus_tag="SMa0501"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; binding-protein-dependent
transport systems inner membrane component, PF00528"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435510.1"
/db_xref="GI:16262717"
/db_xref="GeneID:1235084"
/translation="MDYTFQFGPLLNYLPQIVSGLWLTIGLSFVGIFGGIALGIFCAV
MSTLSSPIPRLLVRLYVEVVRNTPLLVQIFVIFFGLPNIGIRLSPLTSVFIALVLNNG
GYVAEIVRGGIEATHRSQVEAAESLGLSYFQTLRYVILPPALEKVFTPVVSQCVLLML
STSLVSAIGVEDLTGAAMIASSETFRTMEIYLVVAMVYVVLNFVFRAVLNVAGLMIFT
RSRRRLLGRA"
misc_feature 272761..273402
/locus_tag="SMa0501"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:226670"
misc_feature 272794..273348
/locus_tag="SMa0501"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(272842..272847,272854..272859,272872..272874,
272902..272913,272917..272946,272953..272958,
272962..272964,273031..273033,273037..273039,
273043..273045,273052..273057,273061..273063,
273073..273078,273085..273087,273136..273138,
273178..273183,273190..273192,273211..273222,
273229..273234,273271..273276,273304..273309,
273316..273321,273325..273330,273337..273342)
/locus_tag="SMa0501"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(272920..272964,273211..273228)
/locus_tag="SMa0501"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(272962..272964,273022..273024,273229..273231,
273265..273267,273274..273276,273304..273306)
/locus_tag="SMa0501"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(273088..273126,273142..273147,273157..273159)
/locus_tag="SMa0501"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 273422..274078
/locus_tag="SMa0503"
/db_xref="GeneID:1235085"
CDS 273422..274078
/locus_tag="SMa0503"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435511.1"
/db_xref="GI:16262718"
/db_xref="GeneID:1235085"
/translation="MRTFGSPEFLFIVYALRWTLTLTVLAFVGGGIMGIVLALLRIAR
IRAFSAITTFYMQVIQGLPLLVLLFLCYYAPSLFGIEIAALTAAAIALTINSSAFLGA
IWESALRAIPKAQWESADALALTPYKTLRFVIAPQAIRLALPSTVGFLVQIIKQTSLA
SIIGFIEITRAGQLVSNATFEPLKAFLSVAALYFAVCFPLTQLSLWLERRTACRGART
"
misc_feature 273455..274054
/locus_tag="SMa0503"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:226670"
misc_feature 273467..274015
/locus_tag="SMa0503"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(273515..273520,273527..273532,273545..273547,
273575..273586,273590..273619,273626..273631,
273635..273637,273701..273706,273710..273712,
273716..273718,273725..273730,273734..273736,
273746..273751,273758..273760,273809..273811,
273851..273856,273863..273865,273884..273895,
273902..273907,273944..273949,273977..273982,
273989..273994,273998..274003,274010..274015)
/locus_tag="SMa0503"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(273593..273637,273884..273901)
/locus_tag="SMa0503"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(273635..273637,273686..273688,273902..273904,
273938..273940,273947..273949,273977..273979)
/locus_tag="SMa0503"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(273761..273799,273815..273820,273830..273832)
/locus_tag="SMa0503"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 274136..274933
/locus_tag="SMa0506"
/db_xref="GeneID:1235086"
CDS 274136..274933
/locus_tag="SMa0506"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; bacterial extracellular
solute-binding protein, family 3 motif, PF00467"
/codon_start=1
/transl_table=11
/product="ABC transporter periplasmic substrate-binding
protein"
/protein_id="NP_435512.1"
/db_xref="GI:16262719"
/db_xref="GeneID:1235086"
/translation="MTMRLKSLLLPLVGLLAITVGAATASASSLDDIIARKKVMIGVD
LSVPPFGITNEEMQPDGLDVDVAKLLAKDLGVELELVPVTGQSRIPSLQTGKVDFVVA
SFGIYTERALSVAFSNPYGGHRSIIIAPKEATIKSLADLAGKRVGVPRGTAHEKILSA
ANVEGMELVRFDDDSTTLNALVSGQVDAIGTVNYIAAQLQERYPDRGFEEKTTYLQSF
YGVGLRRNDPDLLHWLNTVLFVHKQSGELGAIYEKWMKTPIPELPSF"
misc_feature 274256..274906
/locus_tag="SMa0506"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:215950"
misc_feature 274256..274897
/locus_tag="SMa0506"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature order(274274..274276,274388..274390,274463..274465,
274592..274594,274706..274708)
/locus_tag="SMa0506"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature order(274658..274660,274670..274672,274688..274690)
/locus_tag="SMa0506"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature 274778..274795
/locus_tag="SMa0506"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene 274983..275714
/locus_tag="SMa0508"
/db_xref="GeneID:1235087"
CDS 274983..275714
/locus_tag="SMa0508"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; ABC transporter family,
PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435513.1"
/db_xref="GI:16262720"
/db_xref="GeneID:1235087"
/translation="MSVVVAKNIRKSFGGLQVLKGVSLTVEGGEVVALIGGSGSGKST
FLRCLNGLESVDSGEIEVAGHRMSRKPAELRRLRRDVGIVFQSYNLFPHLTAGENIML
APVQVKGIGKDAARSEAKRCLSLVGLGDRFEAYPDMLSGGQQQRVAIARSLAMQPKVL
LFDEVTSALDPELTGEVLAVIEKLARDGMTMILVTHEMGFARRVANRTIFMRDGIIHE
EGPSAEFFSSPKTPELRAFLHAEVG"
misc_feature 274986..275699
/locus_tag="SMa0508"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:31323"
misc_feature 274992..275630
/locus_tag="SMa0508"
/note="HisP and GlnQ are the ATP-binding components of the
bacterial periplasmic histidine and glutamine permeases,
repectively. Histidine permease is a multisubunit complex
containing the HisQ and HisM integral membrane subunits
and two copies of HisP. HisP...; Region:
ABC_HisP_GlnQ_permeases; cd03262"
/db_xref="CDD:73021"
misc_feature 275088..275111
/locus_tag="SMa0508"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73021"
misc_feature order(275097..275102,275106..275114,275238..275240,
275469..275474,275568..275570)
/locus_tag="SMa0508"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73021"
misc_feature 275229..275240
/locus_tag="SMa0508"
/note="Q-loop/lid; other site"
/db_xref="CDD:73021"
misc_feature 275397..275426
/locus_tag="SMa0508"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73021"
misc_feature 275457..275474
/locus_tag="SMa0508"
/note="Walker B; other site"
/db_xref="CDD:73021"
misc_feature 275481..275492
/locus_tag="SMa0508"
/note="D-loop; other site"
/db_xref="CDD:73021"
misc_feature 275556..275576
/locus_tag="SMa0508"
/note="H-loop/switch region; other site"
/db_xref="CDD:73021"
gene 275787..276734
/locus_tag="SMa0510"
/db_xref="GeneID:1235088"
CDS 275787..276734
/locus_tag="SMa0510"
/note="glimmer prediction; D-isomer specific 2-hydroxyacid
family, PF00389"
/codon_start=1
/transl_table=11
/product="D-isomer specific 2-hydroxyacid dehydrogenase"
/protein_id="NP_435514.1"
/db_xref="GI:16262721"
/db_xref="GeneID:1235088"
/translation="MPKIELLQVGPYPSWDEERLNANFTMHRYFEAADKAAFLAEHGA
AIRGIATRGELGANWAMIEALPRLEIISVYGVGYDAVDLAAARERGIRVTNTPDVLTK
DVADLGVAMMLAHARGMIGGETWVKSGDWAKKGLYPLKRRVHGKRAGVLGLGRIGFEV
AKRLAGFDMEIAYSDTGAKDFARDWSFIADPVELAARSDFLFVTLAASAETRHIVGRR
VIEALGPDGMLINISRASNIDEEALLDALESKVLGAAALDVFEGEPNLNPRFLALDNV
LLQPHMASGTAETRKAMGQLVFDNLSAHFGGRPLPTPVL"
misc_feature 275793..276731
/locus_tag="SMa0510"
/note="Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism /
General function prediction only]; Region: LdhA; COG1052"
/db_xref="CDD:223980"
misc_feature 275796..276704
/locus_tag="SMa0510"
/note="Hydroxy(phenyl)pyruvate Reductase,
D-isomer-specific 2-hydroxyacid-related dehydrogenase;
Region: HPPR; cd12156"
/db_xref="CDD:240633"
misc_feature order(275943..275945,276009..276017,276084..276086,
276486..276488,276627..276629)
/locus_tag="SMa0510"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:240633"
misc_feature order(276012..276017,276096..276098,276240..276254,
276306..276317,276396..276404,276417..276419,
276480..276488,276558..276560,276627..276629,
276633..276638)
/locus_tag="SMa0510"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:240633"
misc_feature order(276486..276488,276573..276575,276627..276629)
/locus_tag="SMa0510"
/note="catalytic site [active]"
/db_xref="CDD:240633"
gene 276745..277776
/gene="idnD"
/locus_tag="SMa0512"
/db_xref="GeneID:1235089"
CDS 276745..277776
/gene="idnD"
/locus_tag="SMa0512"
/function="Small molecule metabolism"
/note="glimmer prediction; zinc-binding family, PF00107"
/codon_start=1
/transl_table=11
/product="IdnD L-idonate 5-dehydrogenase"
/protein_id="NP_435515.1"
/db_xref="GI:16262722"
/db_xref="GeneID:1235089"
/translation="MKAIVIHTAKDLRVEECAVEKPGPGEVEIRLAAGGICGSDLHYY
NHGGFGTVRLKEPMILGHEVSGHVAALGEGVSDLAIGDLVAVSPSRPCGACDYCLKGL
PNHCFHMRFYGSAMPFPHIQGAFRERLVAKASQCVKAEGLSAGEAAMAEPLSVTLHAT
RRAGEMLGKRVLVTGCGPIGTLSILAARRAGAAEIVAADLSERALGFARAVGADRTVN
LSEDRDGLVPFSENKGTFDVLYECSGAQPALVAGIQALRPRGVIVQLGLGGDMALPMM
AITAKELDLRGSFRFHEEFATAVKLMQGGLIDVKPLITHTLPLGEALKAFEIASDKGQ
SMKTQIAFA"
misc_feature 276751..277770
/gene="idnD"
/locus_tag="SMa0512"
/note="L-idonate 5-dehydrogenase; Provisional; Region:
PRK09880"
/db_xref="CDD:182130"
misc_feature 276754..277770
/gene="idnD"
/locus_tag="SMa0512"
/note="L-idonate 5-dehydrogenase; Region: idonate-5-DH;
cd08232"
/db_xref="CDD:176194"
misc_feature order(276853..276861,276868..276870,277195..277197,
277207..277209,277267..277284,277339..277344,
277354..277356,277399..277401,277468..277473,
277477..277479,277537..277542,277606..277614)
/gene="idnD"
/locus_tag="SMa0512"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:176194"
misc_feature order(276853..276855,276859..276861,276928..276930,
277195..277197)
/gene="idnD"
/locus_tag="SMa0512"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176194"
gene 277846..278601
/gene="idnO1"
/locus_tag="SMa0513"
/db_xref="GeneID:1235090"
CDS 277846..278601
/gene="idnO1"
/locus_tag="SMa0513"
/EC_number="1.1.1.69"
/function="Small molecule metabolism; Degradation"
/note="catalyzes the formation of 5-dehydro-D-gluconate
from D-gluconate"
/codon_start=1
/transl_table=11
/product="gluconate 5-dehydrogenase"
/protein_id="NP_435516.1"
/db_xref="GI:16262723"
/db_xref="GeneID:1235090"
/translation="MSTELFDLTGKRALVTGSSQGIGYALAKGLAATGAEIILNGRDA
AKLAAAARDLGAGHTLAFDATDHQAVRKAVDAFEADVGAIDILVNNAGMQHRTPLEDF
PADAFERLLKTNVSSVFNVGQAVARHMIKRGAGKIINIASVQTALARPGIAPYTATKG
AVGNLTKGMATDWARYGLQCNAIAPGYFDTPLNAALVADPSFSDWLERRTPAGRWGKV
EELVGACIFLSSDASSFVNGHVLYVDGGITASL"
misc_feature 277846..278598
/gene="idnO1"
/locus_tag="SMa0513"
/note="gluconate 5-dehydrogenase; Provisional; Region:
PRK07523"
/db_xref="CDD:236040"
misc_feature 277861..278592
/gene="idnO1"
/locus_tag="SMa0513"
/note="gluconate 5-dehydrogenase (Ga5DH)-like, classical
(c) SDRs; Region: Ga5DH-like_SDR_c; cd05347"
/db_xref="CDD:187605"
misc_feature order(277894..277896,277900..277911,277966..277974,
278029..278037,278113..278124,278182..278184,
278263..278271,278308..278310,278320..278322,
278398..278409,278413..278424)
/gene="idnO1"
/locus_tag="SMa0513"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187605"
misc_feature order(278044..278046,278137..278151,278155..278157,
278164..278169,278176..278178,278191..278193,
278200..278205,278212..278214,278221..278223,
278275..278283,278299..278304,278311..278316,
278323..278328,278335..278340,278344..278352,
278356..278364)
/gene="idnO1"
/locus_tag="SMa0513"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187605"
misc_feature order(278185..278187,278269..278271,278308..278310,
278320..278322)
/gene="idnO1"
/locus_tag="SMa0513"
/note="active site"
/db_xref="CDD:187605"
gene 278603..279121
/gene="idnK"
/locus_tag="SMa0514"
/db_xref="GeneID:1235091"
CDS 278603..279121
/gene="idnK"
/locus_tag="SMa0514"
/EC_number="2.7.1.12"
/function="Small molecule metabolism; Degradation"
/note="glimmer prediction Selected Met12 as start to avoid
overlap with SMA0513. possible operon with
SMA0512,SMA0513,SMA0514,SMA0516,SMA0518"
/codon_start=1
/transl_table=11
/product="gluconate kinase"
/protein_id="NP_435517.1"
/db_xref="GI:16262724"
/db_xref="GeneID:1235091"
/translation="MAPHSARRGIVLMGVAGCGKSAIGAALATRLGATYVDGDDLHPP
ENIARMSRGEPLTDDDRWPWLTLVGRRLAAPDGVLIIGCSALKRRYRDHIRNEAGAPV
TFVHLSGTKVLITARMGARAGHFMPVSLIESQFAALEPPTTDENVITVDIDQPLEVLV
DEIAVKLEETPS"
misc_feature 278630..279058
/gene="idnK"
/locus_tag="SMa0514"
/note="Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits; Region: GntK; cd02021"
/db_xref="CDD:238979"
misc_feature 278630..279025
/gene="idnK"
/locus_tag="SMa0514"
/note="AAA domain; Region: AAA_33; pfam13671"
/db_xref="CDD:222307"
misc_feature order(278642..278665,278711..278713,278717..278719,
278951..278953,278963..278965)
/gene="idnK"
/locus_tag="SMa0514"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238979"
misc_feature order(278648..278653,278963..278965)
/gene="idnK"
/locus_tag="SMa0514"
/note="Gluconate-6-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:238979"
gene 279118..280005
/locus_tag="SMa0516"
/db_xref="GeneID:1235092"
CDS 279118..280005
/locus_tag="SMa0516"
/function="Small molecule metabolism; Central intermediary
metabolism"
/note="glimmer prediction possible operon with
SMA0512,SMA0513,SMA0514,SMA0516,SMA0518. best match to
3-hydroxyisobutyrate and D-threonine dehydratase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435518.1"
/db_xref="GI:16262725"
/db_xref="GeneID:1235092"
/translation="MTNRVALIGAGAMGGSIGARLVETGNRLTVFDPGPDKVQALVDK
GAFAAPSAAEAAAVSDYVILSLNAPAIVRQAVFGDAGVAAGAQAGTLIIDMSSIDPNA
TKQLAADAAEKGLRWVDSPLSGGAPKALIGELTLMAGGTAQDVKDAHAVLRHVASNYT
HMGSVGAGQTTKLINQVLCGLGFLAVAEATQLALDAGVDASKIPQALMGGRADSAILQ
EYMPRFVTKDYRHTGRIDNMVKDLAGAQDLARRTNTAMPLTAACAEIHRMLTAAGLGG
EDQAALMEFFRGPNKENFK"
misc_feature 279175..279978
/locus_tag="SMa0516"
/note="3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism];
Region: MmsB; COG2084"
/db_xref="CDD:224995"
misc_feature 279175..>279639
/locus_tag="SMa0516"
/note="6-phosphogluconate dehydrogenase-like protein;
Reviewed; Region: PRK09599"
/db_xref="CDD:236582"
gene 280002..280334
/locus_tag="SMa0518"
/db_xref="GeneID:1235093"
CDS 280002..280334
/locus_tag="SMa0518"
/function="Miscellaneous; Unknown"
/note="glimmer prediction possible operon with
SMA0512,SMA0513,SMA0514,SMA0516,SMA0518. may be involved
in gluconate metabolism"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435519.1"
/db_xref="GI:16262726"
/db_xref="GeneID:1235093"
/translation="MITRYALFEGKVKDGHTEAFRKAVIERILPKWKQFPHATDVRIS
FAESRDEGAPELSMILAINYPDLEAVEEALASPVRAEARAATEAVLAEFFEGRIHHHV
MSASEFKL"
gene 280693..281535
/locus_tag="SMa0520"
/db_xref="GeneID:1235094"
CDS 280693..281535
/locus_tag="SMa0520"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction weak (5e-7, 8/2000) match to
first 60% of transcriptional regulator RpiR but finds none
of the other 15 members of the family"
/codon_start=1
/transl_table=11
/product="RpiR family transcriptional regulator"
/protein_id="NP_435520.1"
/db_xref="GI:16262727"
/db_xref="GeneID:1235094"
/translation="MLIAERVQTIADTLTPAERRLVKEIIAKPRDVALGTAGELARRT
GVHEATASRLARKLGFETYAGFRHAIRDEFIVKTDPALRVRRTLETSRGHGMLEMLVQ
QEIEALTRLSSYVDEERLAAAAAALSDRRRIFIFARGNAETLAVLMNRRLRRMAFETV
LVCGDSRDIAEQILSMGPDDALLVFAFRRQPRAYAPLIERAGKVGAVSVVVSGTVGPS
LSPKADHLLAAPRAGDADAFQTLTVPMAICNGLILSMAQSDEVRSLSNLEQLGELIGE
LEGR"
misc_feature 280693..281490
/locus_tag="SMa0520"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:224651"
misc_feature 280693..280914
/locus_tag="SMa0520"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature 281044..281454
/locus_tag="SMa0520"
/note="SIS domain. SIS (Sugar ISomerase) domains are found
in many phosphosugar isomerases and phosphosugar binding
proteins. SIS domains are also found in proteins that
regulate the expression of genes involved in synthesis of
phosphosugars; Region: SIS; cl00389"
/db_xref="CDD:241833"
gene 281664..282392
/locus_tag="SMa0522"
/db_xref="GeneID:1235095"
CDS 281664..282392
/locus_tag="SMa0522"
/function="Miscellaneous; Unknown"
/note="glimmer prediction, AUG start may be part of
transcription unit with SMA0522, SMA0523, SMA0525,
SMA0526, SMA0527"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435521.1"
/db_xref="GI:16262728"
/db_xref="GeneID:1235095"
/translation="MKRMMMIGAVLVALAAPAMAQDVDTLSPEALLTLAQKEGKVTVY
SFTSRIARVEKAFEEAYPGIDLIGFDMSSTEMITRLRTEAAAGITNADVVYVSDAPVV
LSDLLETGLLKNYVPPRIADKLDTAFKSPLLAQRLSTKVLMYNEAAYPNGAPIKNLWD
LTTPEWKGKVLMVDPLQRGDYLDLMTEFVLRSDEMAKAYEALFRKPIELDDGVETAGH
QFIVDLFENDLVLLADGRCECGGW"
misc_feature 281826..>282368
/locus_tag="SMa0522"
/note="ABC-type Fe3+ transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: AfuA; COG1840"
/db_xref="CDD:224753"
gene 282373..282777
/locus_tag="SMa0523"
/db_xref="GeneID:1235096"
CDS 282373..282777
/locus_tag="SMa0523"
/function="Miscellaneous; Unknown"
/note="glimmer prediction, GUG start may be part of
transcription unit with SMA0522, SMA0523, SMA0525,
SMA0526, SMA0527. Small overlap with SMA0522"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435522.1"
/db_xref="GI:16262729"
/db_xref="GeneID:1235096"
/translation="MNAAVGKLGQDQPPVGFTSYSDRRDNEDEGWALQVVNDVVPSNG
IVFPALLALTADTKNPAASRLAIDFLMGDDSETGGPGYAPFYVAGDWPTRSDIKGHPD
AIPLADFKAWRVDPAATATIRKSVGDLVLQLQ"
misc_feature <282373..282762
/locus_tag="SMa0523"
/note="ABC-type Fe3+ transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: AfuA; COG1840"
/db_xref="CDD:224753"
gene 282774..284579
/locus_tag="SMa0525"
/db_xref="GeneID:1235097"
CDS 282774..284579
/locus_tag="SMa0525"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction, AUG start may be part of
transcription unit with SMA0522, SMA0523, SMA0525,
SMA0526, SMA0527. Best match (3e-16, 8/2000) to ABC iron
transport system"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435523.1"
/db_xref="GI:16262730"
/db_xref="GeneID:1235097"
/translation="MIRVPPSPSGRGASALSDILMSTQSRNRSFKDAFLSPGLGLKAA
VLVLLTALVAAPLLKVFGATLAPGAWSAWSDVLASNLSRNLFWLPLANTMILGAGVAT
GCVLVGGFLAWLVVMTDVPFRRTIGLLATLPFMIPSFATALAWGSLFRNARVGGQIGF
LEGLGFSVPDWLAWGMVPTLVVLMAHYYSLAFTVIAAALATVNSDLVEAAQMTGAGRR
RIFLGIVLPVALPALVAGASLTFAGAVSNFAAPALLGLPVRMQTLATRLYGMIEIGQA
ERGYVLAILLILVSAFFLWAGNRVISGRRSYATITGKGGRSKRFALGTARLPLFVAAA
SICVLTTVVPVVILIASSLAPSSSALFSDWSLHYWIGASDPAIARGQAGIWNNPLILS
ATGVTVGLGVTVAFSASLVGLLVAFVLARSRSGFLSAAINQISFLPLLVPGIAFGAAY
VALLGAPIGPLPALYGTFLLLVIAATAYLVPFAVQTGRAVIQQVSGDLDESARMTGAG
FLRRLFAITVPLAIRGLSAGALIVFVKIVRDLSLVVLLFTPTMPLLSVLAYRYASDGF
TQFANALTVVVLVISVAATLFANRLQAKSQPWLQS"
misc_feature 282993..284573
/locus_tag="SMa0525"
/note="ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism]; Region: ThiP;
COG1178"
/db_xref="CDD:224099"
misc_feature 283041..283640
/locus_tag="SMa0525"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(283089..283094,283101..283106,283119..283121,
283149..283160,283164..283193,283200..283205,
283209..283211,283326..283331,283335..283337,
283341..283343,283350..283355,283359..283361,
283371..283376,283383..283385,283434..283436,
283476..283481,283488..283490,283509..283520,
283527..283532,283569..283574,283602..283607,
283614..283619,283623..283628,283635..283640)
/locus_tag="SMa0525"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(283167..283211,283509..283526)
/locus_tag="SMa0525"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(283209..283211,283311..283313,283527..283529,
283563..283565,283572..283574,283602..283604)
/locus_tag="SMa0525"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(283386..283424,283440..283445,283455..283457)
/locus_tag="SMa0525"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
misc_feature 283995..284522
/locus_tag="SMa0525"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(284001..284006,284013..284018,284031..284033,
284064..284075,284079..284108,284115..284120,
284124..284126,284202..284207,284211..284213,
284217..284219,284226..284231,284235..284237,
284247..284252,284259..284261,284310..284312,
284352..284357,284364..284366,284385..284396,
284403..284408,284445..284450,284478..284483,
284490..284495,284499..284504,284511..284516)
/locus_tag="SMa0525"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(284082..284126,284385..284402)
/locus_tag="SMa0525"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(284124..284126,284187..284189,284403..284405,
284439..284441,284448..284450,284478..284480)
/locus_tag="SMa0525"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(284262..284300,284316..284321,284331..284333)
/locus_tag="SMa0525"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 284576..285622
/locus_tag="SMa0526"
/db_xref="GeneID:1235098"
CDS 284576..285622
/locus_tag="SMa0526"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction trimmed by 4 amino acids to
decrease overlap with SMA0525 and give AUG start. may be
part of transcription unit with SMA0522, SMA0523, SMA0525,
SMA0526, SMA0527"
/codon_start=1
/transl_table=11
/product="maltose/trehalose ABC transporter"
/protein_id="NP_435524.1"
/db_xref="GI:16262731"
/db_xref="GeneID:1235098"
/translation="MIQIESLHKQFGSYEAVQGVSLSVPKGAFLVLVGPSGCGKSTIL
RMLAGLEAPTSGTITFGGNTVSDGGRGWVIEPSRRDTGLVFQSYALWPHMTVAGNIDW
PLKVAGLDRDKRCSRVGEVLDLLGIGQLAARYPNEISGGQQQRVAIARMIAPKPGILL
FDEPLSNLDAKLRVEMRTELLRVHRATGATSVYVTHDQVEAMTMATHVAVMNAGRIEQ
FGSPGELVARPRTAFVATFVGTPPANLVPVVNGAYCGRLADAALAGRNGSAMFRPEEL
TLAESPSDRTLTLDYAEASPMAGRVMVTGIRADLRLTAIVDSLPSFSVGHEVHFQLPP
APSMFFTPEGVRAQ"
misc_feature 284576..285604
/locus_tag="SMa0526"
/note="ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism]; Region: MalK;
COG3839"
/db_xref="CDD:226359"
misc_feature 284579..285235
/locus_tag="SMa0526"
/note="ATP-binding cassette domain of the carbohydrate and
solute transporters-like; Region: ABC_Carb_Solutes_like;
cd03259"
/db_xref="CDD:213226"
misc_feature 284675..284698
/locus_tag="SMa0526"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213226"
misc_feature order(284684..284689,284693..284701,284831..284833,
285059..285064,285161..285163)
/locus_tag="SMa0526"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213226"
misc_feature 284822..284833
/locus_tag="SMa0526"
/note="Q-loop/lid; other site"
/db_xref="CDD:213226"
misc_feature 284987..285016
/locus_tag="SMa0526"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213226"
misc_feature 285047..285064
/locus_tag="SMa0526"
/note="Walker B; other site"
/db_xref="CDD:213226"
misc_feature 285071..285082
/locus_tag="SMa0526"
/note="D-loop; other site"
/db_xref="CDD:213226"
misc_feature 285149..285169
/locus_tag="SMa0526"
/note="H-loop/switch region; other site"
/db_xref="CDD:213226"
gene 285619..286218
/locus_tag="SMa0527"
/db_xref="GeneID:1235099"
CDS 285619..286218
/locus_tag="SMa0527"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/note="glimmer prediction, AUG start may be part of
transcription unit with SMA0522, SMA0523, SMA0525,
SMA0526, SMA0527. match to E. coli gpmB phosphoglycerate
mutase (1e-20, 8/2000) and to E. coli cobC
alpha-ribazole-5'-phosphate phosphatase (2e-15, 8/2000)
over 85% of predicted coding region"
/codon_start=1
/transl_table=11
/product="phosphatase"
/protein_id="NP_435525.1"
/db_xref="GI:16262732"
/db_xref="GeneID:1235099"
/translation="MKRIILVRHGESAWNSVRRLQGQADIGLSARGEAQATALRATIE
AMRPDHVIASDLLRARHTAALLGYPHAQLSPALREIDVGDWTGRAIGDLMAEDQDAYL
GWRAGTYAPRGGERWQEFRDRVTAGLGKAVSIPGERLLVVCHGGVIRALLDGLLGLPP
KRIIPVGPASVTVLADKPGGMRLETFNFSPDGPVFDAPD"
misc_feature 285625..286140
/locus_tag="SMa0527"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature order(285640..285645,285790..285792,286048..286053)
/locus_tag="SMa0527"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene complement(286919..287350)
/locus_tag="SMa5025"
/db_xref="GeneID:6435263"
CDS complement(286919..287350)
/locus_tag="SMa5025"
/note="Has weak, possibly spurious, similarity to the SAM-
binding domain found in methyltransferases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000341.1"
/db_xref="GI:193782575"
/db_xref="GeneID:6435263"
/translation="MAKDLSPRLLAIVDALPLRRGMRVLEIGCGPGAMAREIAGRIGD
GHVLAIDRSAKAIAQAQAASQAEIGSGRLSLRQVAAEDFELEAGEMPYDIAVAVRVGA
LDGRHPEAGRRAKRRVAAALTPQGQLLIDGGDPLRRLLLDD"
misc_feature complement(<287060..287284)
/locus_tag="SMa5025"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(287111..287119,287195..287200,
287252..287272))
/locus_tag="SMa5025"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(287402..287641)
/locus_tag="SMa0535"
/db_xref="GeneID:1235100"
CDS complement(287402..287641)
/locus_tag="SMa0535"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435526.2"
/db_xref="GI:193782576"
/db_xref="GeneID:1235100"
/translation="MQAAHLVARFESGKTCDQIAPRVKAIPFVTRIDSLAGEIDLLVS
VDADSIDSVEDVRRQVASVPGIATVTTALVLRRHL"
misc_feature complement(287411..287611)
/locus_tag="SMa0535"
/note="AsnC family; Region: AsnC_trans_reg; pfam01037"
/db_xref="CDD:189815"
misc_feature complement(287408..>287608)
/locus_tag="SMa0535"
/note="Transcriptional regulators [Transcription]; Region:
Lrp; COG1522"
/db_xref="CDD:31711"
gene 287923..288336
/locus_tag="SMa0537"
/db_xref="GeneID:1235101"
CDS 287923..288336
/locus_tag="SMa0537"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435527.1"
/db_xref="GI:16262734"
/db_xref="GeneID:1235101"
/translation="MTHTKAPITAEDTIRSWAGAVAACDIEAVCYADPLLVFDVVGQL
QREGKALYRRAWEDEFFPWHGGTGKFALRELSVHAGGDIAFATGLLDCGGTEGGRPAE
YTLRLTLGLAKTPNGWYIVHEHSSEPTSFNEKVVG"
misc_feature 287923..288327
/locus_tag="SMa0537"
/note="Ketosteroid isomerase homolog [Function unknown];
Region: COG4319"
/db_xref="CDD:226769"
misc_feature 287950..288306
/locus_tag="SMa0537"
/note="SnoaL-like domain; Region: SnoaL_3; pfam13474"
/db_xref="CDD:222158"
gene 288341..288703
/locus_tag="SMa0538"
/db_xref="GeneID:1235102"
CDS 288341..288703
/locus_tag="SMa0538"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435528.1"
/db_xref="GI:16262735"
/db_xref="GeneID:1235102"
/translation="MALLDEILEIERRLWRNDADVYAATYLPQAVLIFPGIGRIDLDT
AVEAIRGENAAGRHWAEVSFSAETAVEVAAGTCLVAYHADARWNDQPTAEAVDCLTVY
VKRDGRWRVAAHQQTASA"
gene 289833..290228
/locus_tag="SMa0541"
/db_xref="GeneID:1235103"
CDS 289833..290228
/locus_tag="SMa0541"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435529.2"
/db_xref="GI:193782577"
/db_xref="GeneID:1235103"
/translation="MRRILIALAATTTIVGAAAAQTAETTTTETFVTAKPTDVLSYNL
INLNVTNTANESIGEIKDLVLSEGQLAGYILSVGGVLGMGERYVVVSPKALKITYVEN
DKKWTAVMDATKDQLKAAPEFKYEGRWKR"
misc_feature 289956..290183
/locus_tag="SMa0541"
/note="PRC-barrel domain; Region: PRC; pfam05239"
/db_xref="CDD:218519"
gene 290367..290957
/locus_tag="SMa0543"
/db_xref="GeneID:1235104"
CDS 290367..290957
/locus_tag="SMa0543"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435530.1"
/db_xref="GI:16262737"
/db_xref="GeneID:1235104"
/translation="MVAVALLMPGTDEDATETATPPATTTEPTTPQPSTSAPPPTTEP
APTTPRRNHQPLSRPTRSPRSRLTHGSDRRSLLLDRRNVRDASRDRRARRPSRFGCQR
RNNNVSSRACGSQMATQDKRGGNGRNAGNGSYLRRTSSTLSIESASTLTSRSISPARE
SIRVTNGTAPYLRGRFLSISPHQAAFDAVEDFPHNL"
gene complement(291198..291638)
/locus_tag="SMa0545"
/db_xref="GeneID:1235105"
CDS complement(291198..291638)
/locus_tag="SMa0545"
/function="Miscellaneous; Unknown"
/note="glimmer prediction weak match (e-04) to Pyrococcus
hypothetical protein over 80% of length"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435531.1"
/db_xref="GI:16262738"
/db_xref="GeneID:1235105"
/translation="METLVADASIAIKWVVEEEGTDSAVELRSRFRFAAPELLIPECA
NILWKKVQRGELSRDEAVLAAKLLERSGIDFVSMTGLLEEATNLSIVLSHPAYDCTYL
IAAQRTGSRFVTADMRLLRIVSERAPGEIARLCVSLPDARNDAH"
misc_feature complement(291264..291626)
/locus_tag="SMa0545"
/note="PIN domain of the Pyrobaculum aerophilum Pae0151
and Pae2754 proteins and homologs; Region: PIN_Pae0151;
cd09873"
/db_xref="CDD:189043"
misc_feature complement(order(291291..291293,291345..291347,
291513..291515,291618..291620))
/locus_tag="SMa0545"
/note="putative active site [active]"
/db_xref="CDD:189043"
misc_feature complement(order(291273..291275,291285..291296,
291339..291341,291345..291359,291369..291374,
291378..291383,291390..291392,291435..291437,
291444..291449,291453..291458,291492..291500,
291504..291521,291525..291533,291612..291614))
/locus_tag="SMa0545"
/note="homotetrameric interface [polypeptide binding];
other site"
/db_xref="CDD:189043"
misc_feature complement(291291..291293)
/locus_tag="SMa0545"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:189043"
gene complement(291638..291877)
/locus_tag="SMa0548"
/db_xref="GeneID:1235106"
CDS complement(291638..291877)
/locus_tag="SMa0548"
/note="glimmer prediction ProDom match (3e-5) to plasmid
stability protein from Pseudomonas syringae and to
sequence from Sinorhizobium sp. NGR234 over amino terminal
half of SMA0548"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435532.1"
/db_xref="GI:16262739"
/db_xref="GeneID:1235106"
/translation="MPGNLHVRNLDDDLISKLKIRAARHGRSAEAEHREILRQALASE
GGPDFEELAADLRKLTASRKQTPSEVLLRESRDER"
misc_feature complement(291641..291874)
/locus_tag="SMa0548"
/note="Plasmid stability protein [General function
prediction only]; Region: StbC; COG4691"
/db_xref="CDD:227035"
gene 292217..293509
/locus_tag="SMa0551"
/db_xref="GeneID:1235107"
CDS 292217..293509
/locus_tag="SMa0551"
/function="Small molecule metabolism; Degradation"
/note="Catalyzes the hydrolytic cleavage of a
carbon-halogen bond in N-ethylammeline"
/codon_start=1
/transl_table=11
/product="N-ethylammeline chlorohydrolase"
/protein_id="NP_435533.2"
/db_xref="GI:193782578"
/db_xref="GeneID:1235107"
/translation="MGMALIGPGFIDLDALSDIDTGVLGLDHQPGWKKGRVWPRDYVE
EGPVEMLTPEELAFQKRYAFAHLIRNGITTALPIASLFYRAWNETPEEFASAAESAAD
LGLRVYLGPAFRAGHSVIEADGTLTVEIDAARGRAGLDAAIAFCAAHDNTHGGLVRAM
LAPDRVEYWTADLLKRTAGVARDLGVPVRLHCCQSTFEVETIRRSFGTGSAEWRHDIG
FLSERALLPHGTHTDREGLRIIADSGATVVHCPLVMARHGAALNHFGDLRRAGLRLGM
GTDTWPPDMILNMQIGLMLGRVMGGELDSPSSADLYDVATLGGADARGRPDLGRLQAG
AAADIVVIDLAAHHLGQVRDPIAGLVASANGRDVRTVFIAGRRVMSEGTIPGFDFAEA
HARAGAQFERLVAQYPRRTWRHPAVQSIFPPSYEVTRT"
misc_feature 292217..293506
/locus_tag="SMa0551"
/note="N-ethylammeline chlorohydrolase; Provisional;
Region: PRK06151"
/db_xref="CDD:180428"
misc_feature 292310..293371
/locus_tag="SMa0551"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:241750"
misc_feature order(292787..292789,292898..292900,293051..293053)
/locus_tag="SMa0551"
/note="active site"
/db_xref="CDD:238617"
gene 293602..294093
/locus_tag="SMa0552"
/db_xref="GeneID:1235108"
CDS 293602..294093
/locus_tag="SMa0552"
/function="Small molecule metabolism; Central intermediary
metabolism"
/note="glimmer prediction, GTG start moderate match
(3e-21, 8/2000) to predicted allantoinases over about 50%
of protein length"
/codon_start=1
/transl_table=11
/product="cyclic amidohydrolase"
/protein_id="NP_435534.2"
/db_xref="GI:193782579"
/db_xref="GeneID:1235108"
/translation="MCDLFVRNATVVTEERTFDGGISVSNGRIDELVVGQRDIAAARQ
IIDASGLLLLPGLVDAHVHFSEPGRGHWEGFETGSRAAAAGGITTFVEMPLNAQPATI
DAAALVMKKAAAKQSHIDYALWGGLVDDNLDDLADLRRGGVVGFYRERHCRGGGRGLA
GAT"
misc_feature 293608..>294039
/locus_tag="SMa0552"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:241750"
gene 294071..294868
/locus_tag="SMa0554"
/db_xref="GeneID:1235109"
CDS 294071..294868
/locus_tag="SMa0554"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435535.1"
/db_xref="GI:16262742"
/db_xref="GeneID:1235109"
/translation="MVWREQLDLLLGALSALHIGGLQAEGAEIWRDPEGQFVWELLCH
PAVIAYYERHYPFAPPLLLRAAGDRRLPDTYRSQWQAELEQEGFDAAYRQFLHLNARF
ISNDVIGYFIELLDGFYVFDTHIDEFRRELEQPARLGGWLTRPDRWQLLEGMASFYEF
ALDLDQYLAALEFPMLRGHVWLHFAYWFGNGGARMEEVALWLQNAVAHAAEDESIDGA
ELGEALARLRAPQRYPLVLIEQTAEVLGPWLESSGVGEQLSAGSRSL"
gene complement(295587..296474)
/locus_tag="SMa0557"
/db_xref="GeneID:1235110"
CDS complement(295587..296474)
/locus_tag="SMa0557"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction Good match to several
LysR-related transcriptional regulators. In E. coli
related to Xanthosine metabolism"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435536.1"
/db_xref="GI:16262743"
/db_xref="GeneID:1235110"
/translation="MQREELGDLLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEA
RLGVRLLTRTTRSVAPTEAGEQLFSTLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQ
HSIDTILWPKLSAFLLAYPDIKVELVAESALTDIVAERFDAGVRLGDQVEKDMIAVRI
GPPARMIVVGAPSCLRDRPPPKTPQELTTHRCINLRLPSYGGFYAWEFERDGHEVRVR
VDGQVAFNGVPQIVKAALDGFGLTYVHEDVVREYLKNGRLVQILDDWTPPFPGYHLYY
PSRRHPSPAFTLLVEALKE"
misc_feature complement(295590..296462)
/locus_tag="SMa0557"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(296280..296459)
/locus_tag="SMa0557"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(295596..296201)
/locus_tag="SMa0557"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_5; cd08474"
/db_xref="CDD:176163"
misc_feature complement(order(295659..295661,295740..295742,
295791..295793,295983..295985,295992..295994,
296034..296036,296151..296153,296163..296165))
/locus_tag="SMa0557"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176163"
misc_feature complement(order(295764..295766,295773..295778,
295797..295811,295902..295904,296088..296108,
296112..296114,296124..296126,296133..296138,
296142..296147,296157..296162))
/locus_tag="SMa0557"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176163"
gene 296598..296990
/locus_tag="SMa0558"
/db_xref="GeneID:1235111"
CDS 296598..296990
/locus_tag="SMa0558"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction carboxyl third has weak ProDom
match (3e-3) to hypothetical proteins of similar length"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435537.2"
/db_xref="GI:193782580"
/db_xref="GeneID:1235111"
/translation="MGLKRLLIIAASIIAPLPVQQVVAQEAKGPVIRIAELEIDPAQM
AAYSAAVKEEMEESMRVEPGVLALYAVSIKGQSHHLRFFEMYADQAAYESHRESPHFR
KYVETTKDMITSRKLLETDNFQLSAKLR"
misc_feature 296679..296981
/locus_tag="SMa0558"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1359"
/db_xref="CDD:224278"
gene 297048..297791
/locus_tag="SMa0559"
/db_xref="GeneID:1235112"
CDS 297048..297791
/locus_tag="SMa0559"
/function="Small molecule metabolism; Degradation"
/note="glimmer prediction match (5e-10, 8/2000) to several
4-carboxymuconolactone decarboxylases in 40% of the
protein"
/codon_start=1
/transl_table=11
/product="4-carboxymuconolactone decarboxylase"
/protein_id="NP_435538.2"
/db_xref="GI:193782581"
/db_xref="GeneID:1235112"
/translation="MMTTSNAGAQQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVW
QRPGLNRRDRSLVTIAALIARGEAPALTYYADQALENGVKPSEISETITHLAYYSGWG
KAMATVGPVSEAFAKRGIGQDQLAAVESTPLPLDEEAEAQRATTVGNQFGSVAPGLVQ
YTTDYLFRDLWLRPDLAPRDRSLVTIAALISVGQVEQITFHLNKALDNGLSEEQAAEV
ITHLAFYAGWPNAMSALPVAKAVFEKRRG"
misc_feature 297099..297413
/locus_tag="SMa0559"
/note="Uncharacterized homolog of
gamma-carboxymuconolactone decarboxylase subunit [Function
unknown]; Region: COG0599"
/db_xref="CDD:223672"
misc_feature 297459..297788
/locus_tag="SMa0559"
/note="Uncharacterized homolog of
gamma-carboxymuconolactone decarboxylase subunit [Function
unknown]; Region: COG0599"
/db_xref="CDD:223672"
gene 297935..298318
/locus_tag="SMa0561"
/db_xref="GeneID:1235113"
CDS 297935..298318
/locus_tag="SMa0561"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction, GTG start good match (7e-44,
8/2000) to hypothetical Xylella protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435539.1"
/db_xref="GI:16262746"
/db_xref="GeneID:1235113"
/translation="MLPMNIWPTDELRQIAESDDLHIAPFRENGRTYGTLTWIWSVVV
DGELYVRGYNGQQSRWYQAAIRQKAGRITAAGMTKEVSFEPVEGAINDQIDEGYRRKY
ATSRYLAPMIGERARAATVKITPKD"
misc_feature 297935..298315
/locus_tag="SMa0561"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4334"
/db_xref="CDD:34056"
gene 298329..299318
/locus_tag="SMa0563"
/db_xref="GeneID:1235114"
CDS 298329..299318
/locus_tag="SMa0563"
/function="Small molecule metabolism; Degradation"
/note="glimmer prediction excellent match (e-102, 8/2000)
to aldehyde oxidases and dehydrogenases, oxidoreductases"
/codon_start=1
/transl_table=11
/product="aldehyde or keto oxidase"
/protein_id="NP_435540.1"
/db_xref="GI:16262747"
/db_xref="GeneID:1235114"
/translation="MQKRKLGQGLEVSALSLGCMGYGKARDIPDRPQMIELLRRAVDL
GMDFFDTAEVYGPWTNEEMVGEAFAGMRDKVKIATKFGWDIDQSTGEHGGGVNSKPTQ
IRSAVEGSLKRLRTDFIDLLYQHRVDPDVPMEDVAGTVKDLIAEGKVRYFGLSEAGAE
SIRRAHAVQPVAALQSEYSLWTREPEAEIIPTLEELGIGLVPFSPLGKGFLAGKIDAS
TAFAANDFRSQIPRFAPEAREANQALVDLIRSVGERRSATPAQVALAWLMAQKPWIVP
LFGTRKLERLEENLGALSVTLSDDDLEQIESGAAAIRIEGARYPEEMLRRSGR"
misc_feature 298335..299249
/locus_tag="SMa0563"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature 298368..299249
/locus_tag="SMa0563"
/note="Aldo/keto reductase family; Region: Aldo_ket_red;
pfam00248"
/db_xref="CDD:215817"
misc_feature order(298380..298388,298476..298478,298491..298493,
298566..298568,298701..298706,298791..298796,
298851..298853,298935..298952,299106..299108,
299157..299168,299181..299183,299190..299195)
/locus_tag="SMa0563"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(298476..298478,298491..298493,298566..298568,
298701..298703)
/locus_tag="SMa0563"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene 299384..300487
/locus_tag="SMa0564"
/db_xref="GeneID:1235115"
CDS 299384..300487
/locus_tag="SMa0564"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction start codon changed based on
codon usage and homology; Excellent match (e-117) to
Xylella hypothetical protein. Best match (e-22, 8/2000) to
quinoprotein glucose protein, chain B. ProDom match
(e-51) to central domain of family including glucose
dehydrogenase, PQQ protein"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435541.2"
/db_xref="GI:193782582"
/db_xref="GeneID:1235115"
/translation="MPILPEKRRTRMRKRLICTTLSILVGGCCLSGTSMAQDASTPIL
DRGEGAWSSSVLADGLDYPWDIVRDGERLILTEKAGTVVIIEGGNVQRSTLQTSDPLR
TEGGAGLLGIALAPDFADSGQAFFYYSYSSGSEPANRIVAARFDGNTWRETAVLVDAI
PGHRLYNGGRIAIGPDDHLYVTTGWTENYERPQDLQSLAGKVLRLTLAGGVPEDNPFQ
GSLVYSFGHRNPQGLAWNAEGELFVSEHGQAALDEINLIAPGANYGWPIISGDETQEG
MQPPFVHSGGDTWAPSGIAFAGNELLVTALQGRGLYVLDRQARTLQPVVSLGERVRHV
LPVGDDLLLITTNRSPRGQGPSKDRLVRLSAQN"
misc_feature 299405..300484
/locus_tag="SMa0564"
/note="Glucose/sorbosone dehydrogenases [Carbohydrate
transport and metabolism]; Region: COG2133"
/db_xref="CDD:225044"
misc_feature 299534..>300268
/locus_tag="SMa0564"
/note="dehydrogenase, PQQ-dependent, s-GDH family; Region:
non_repeat_PQQ; TIGR03606"
/db_xref="CDD:234278"
gene 300571..301050
/locus_tag="SMa5026"
/db_xref="GeneID:6435264"
CDS 300571..301050
/locus_tag="SMa5026"
/note="Uncharacterized conserved protein, contains double-
stranded beta-helix domain [Function unknown]; Weak
similarity to cupin"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000342.1"
/db_xref="GI:193782583"
/db_xref="GeneID:6435264"
/translation="MKKLIAAASLVILSTAIARAQTIEITPNASAPSALGDAKLFSGH
VVVASLFPANEFTHGTGGHVTFAPGARTAWHTHPAGQMLIVTSGKGWVQQEGGEKREI
NSGDVVWIPVGVNHWHGATNKTGMGHIAISYMKEGKNVEWGKLVTDEEFVGQVPPRD"
misc_feature 300622..301011
/locus_tag="SMa5026"
/note="Uncharacterized conserved protein, contains
double-stranded beta-helix domain [Function unknown];
Region: COG1917"
/db_xref="CDD:224829"
gene 301204..301761
/locus_tag="SMa0567"
/db_xref="GeneID:1235117"
CDS 301204..301761
/locus_tag="SMa0567"
/function="Small molecule metabolism; Fatty acid
biosynthesis"
/note="glimmer prediction Good match (e-57) of entire
SMA0567 protein to carboxyl terminal third of
Sinorhizobium meliloti acetoacetyl CoA synthetase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435543.1"
/db_xref="GI:16262750"
/db_xref="GeneID:1235117"
/translation="MRSSLRGLSINSFFETTSYLEFRSSYSDESARIDQVAEPAFDVS
QHGGIVIHGRSDATLNPGGVRIGTAEIYSQVEQLHEVAESLCIGQDWDDDIRVILFVL
LRDGFDLTEELQAKIKAKIRTGASPRHVPTKIVQVSDIPRTKSGKIVELAVRDVDHGR
PVVNKEVLANPEALDQFVAMVELSV"
misc_feature <301330..301734
/locus_tag="SMa0567"
/note="Adenylate forming domain, Class I; Region:
AFD_class_I; cl17068"
/db_xref="CDD:247692"
misc_feature order(301387..301395,301567..301569,301585..301587)
/locus_tag="SMa0567"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:213270"
gene complement(301877..303766)
/gene="cyaF4"
/locus_tag="SMa0570"
/db_xref="GeneID:1235118"
CDS complement(301877..303766)
/gene="cyaF4"
/locus_tag="SMa0570"
/function="Small molecule metabolism; Global functions"
/note="glimmer prediction excellent match to cya3 from
Sinorhizobium meliloti but match to only one 'real' adenyl
cyclase, from Anabaena is only (e-7) and 25% of protein"
/codon_start=1
/transl_table=11
/product="CyaF4 adenylate cyclase"
/protein_id="NP_435544.1"
/db_xref="GI:16262751"
/db_xref="GeneID:1235118"
/translation="MERKLCAILAADVVGYSALMERDEAGTFERLHAGRKELFEPEIA
RHHGKVFKLMGDGLLAEFGSVVDAVECAVSLQRGLTERNAAVPHDQRIRVRIGINLGE
VIVEREDRYGEGVNVAARLQQLAEPGGICVSGKVAREVEKKLAFGFEPMGEQKVKNII
EPVQAFRIIIEWQARRRPVIRFQRYWVGTGTAVLALLLVLAGAAWQFWPTATVSGKPS
VAVLPFDNYGGDEASGRLADGLTEDIITDLARFPEFKVIARNSTETYKGKAIDVREIG
KALDVGFVVEGSIAREADRVRVTAQLIDSKQGRHLWSQRWDRPDKEVFVIQAEIAEQI
ANRLGGGAGLVQESGRIAAHRKVPGNLNAYELYLLGTERLEQLDQANLEAALSLLTQA
VQSDPGLARGWVELFHTHDLLAGLGIEPERNRALADAAAERALTLDPSDPEAHAVYGS
SLGMRGDFARAEAEYEAALRMAPNAAEILIFYIGWASTFGKPERGADLVERAIQLDPN
YPGWANRPFGLAYFMAGRYPEAVTMFERLGIERHNRWSWAAHAGALAAAERRTEAAAL
VARAMAAHPDLSIELIANEPGWSDAERRRFINTMRLAGFPACTKPEVLAKIEKPLRLP
ECASL"
misc_feature complement(303233..303757)
/gene="cyaF4"
/locus_tag="SMa0570"
/note="Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms]; Region:
CyaA; COG2114"
/db_xref="CDD:225025"
misc_feature complement(303263..303748)
/gene="cyaF4"
/locus_tag="SMa0570"
/note="cyclase homology domain; Region: CHD; cd07302"
/db_xref="CDD:143636"
misc_feature complement(order(303296..303298,303407..303412,
303419..303424,303434..303442,303590..303592,
303599..303607,303611..303613,303716..303733,
303737..303739))
/gene="cyaF4"
/locus_tag="SMa0570"
/note="nucleotidyl binding site; other site"
/db_xref="CDD:143636"
misc_feature complement(order(303599..303601,303731..303733))
/gene="cyaF4"
/locus_tag="SMa0570"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143636"
misc_feature complement(order(303296..303298,303419..303421,
303428..303439,303455..303457,303608..303613,
303647..303649,303662..303664,303671..303676,
303683..303685,303716..303718))
/gene="cyaF4"
/locus_tag="SMa0570"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143636"
misc_feature complement(302747..303154)
/gene="cyaF4"
/locus_tag="SMa0570"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5616"
/db_xref="CDD:227903"
misc_feature complement(302159..302404)
/gene="cyaF4"
/locus_tag="SMa0570"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature complement(order(302165..302167,302177..302179,
302213..302215,302261..302263,302270..302272,
302282..302284,302315..302317,302363..302365,
302372..302374,302384..302386))
/gene="cyaF4"
/locus_tag="SMa0570"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature complement(order(302195..302200,302207..302212,
302225..302230,302303..302308,302312..302317,
302321..302326))
/gene="cyaF4"
/locus_tag="SMa0570"
/note="binding surface"
/db_xref="CDD:238112"
gene 304557..304880
/locus_tag="SMa0572"
/db_xref="GeneID:1235119"
CDS 304557..304880
/locus_tag="SMa0572"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435545.1"
/db_xref="GI:16262752"
/db_xref="GeneID:1235119"
/translation="MKTIIPRQLARSDVEAAIDYYAREAGTEVTHGFIGALQAAYASI
ASHPEAGSLRYAYELGLPDLRSVSLKRYPYLIFYRDQPDHVDVWRVLHAKRDNPQWMQ
EPNNH"
misc_feature 304557..304865
/locus_tag="SMa0572"
/note="Plasmid stabilization system protein [General
function prediction only]; Region: ParE; COG3668"
/db_xref="CDD:226194"
gene complement(305128..305841)
/locus_tag="SMa0574"
/db_xref="GeneID:1235120"
CDS complement(305128..305841)
/locus_tag="SMa0574"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction matches (2e-16) hypothetical
protein from Streptomyces coelicolor"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435546.2"
/db_xref="GI:193782584"
/db_xref="GeneID:1235120"
/translation="MIVQACLNGARPSDYHPRLPLTADAIALDGAACISAGAAELHIH
PRGPDGRESLLAVDEAIYAVRRACPGSLVGVSTGAWIERDEKQTRDCISAWRQLPDYA
SVNISERDAPAVIALLHRMGVGVEAGLATVADAERFVTLPDCHRAFRILIEIEEQDLG
KADAIADGIAQVLERANILRPVLLHGLDATAWHFVNRAHQRRWSTRVGLEDGCQLTNG
EIAGGNADLVADALQIFRS"
misc_feature complement(305131..305841)
/locus_tag="SMa0574"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3246"
/db_xref="CDD:225785"
gene 305892..306179
/locus_tag="SMa0575"
/db_xref="GeneID:1235121"
CDS 305892..306179
/locus_tag="SMa0575"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435547.2"
/db_xref="GI:193782585"
/db_xref="GeneID:1235121"
/translation="MGSFEPLIAPIADDHLRAKGAVRHEPCARLVARMFTFWAKKIAY
CIAWNSGLLVELRRVVGAVPKAPTTLITEPPPLSHRSTLIGQEPDPATRFA"
gene 306248..307339
/locus_tag="SMa0576"
/db_xref="GeneID:1235122"
CDS 306248..307339
/locus_tag="SMa0576"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction Excellent match (e-48) to both
LivK, the E. coli leucine-specific binding protein and
LivJ, the E. coli Leu/Val/Ile binding protein involved in
branched chain amino acid transport"
/codon_start=1
/transl_table=11
/product="Leu or Leu/Val/Ile transport binding protein"
/protein_id="NP_435548.1"
/db_xref="GI:16262755"
/db_xref="GeneID:1235122"
/translation="MRHLFTAAALAFALASQSEAEVLIGVAGPMSGKLAWTGTQLRRG
AEMAVANINAAGGVLGQQVRLIVADDFCDPRQALAAAEKLVADGAVFVIGHYCSGASI
PASKIYAAAGVLQISPSSTNPMLTEQGHANVFRVCSRDDAQGHKAGNYLADHWGDSKI
AILHDNTTYGKGLADETKKQLNMRGVTEAVYQSYTPGKDDYSVEVAALQTAHIAVLYL
GGYHTEAALMVRAARDRAYPVQLISGDDTATEAFGLIAGPAAEGTLFTFVADPRRNAE
AAEVVERFRAENFEPDSWTLHSYGAAEIWAQAVTKANSLDLQAVIAALREDQFDTVLG
RIDFDKKGDLTVQSWVWYVWKSGEYVPVE"
misc_feature 306305..307309
/locus_tag="SMa0576"
/note="leucine ABC transporter subunit substrate-binding
protein LivK; Provisional; Region: PRK15404"
/db_xref="CDD:185302"
misc_feature 306317..307309
/locus_tag="SMa0576"
/note="Type I periplasmic ligand-binding domain of ABC
(Atpase Binding Cassette)-type active transport systems
that are involved in the transport of all three branched
chain aliphatic amino acids (leucine, isoleucine and
valine); Region: PBP1_ABC_LIVBP_like; cd06342"
/db_xref="CDD:107337"
misc_feature order(306335..306337,306362..306364,306374..306376,
306383..306385,306935..306937,306998..307000,
307007..307009,307016..307021,307112..307114)
/locus_tag="SMa0576"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107337"
misc_feature order(306533..306541,306602..306607,306752..306754,
306908..306910,306980..306982)
/locus_tag="SMa0576"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107337"
gene 307530..309989
/gene="cyaN"
/locus_tag="SMa0579"
/db_xref="GeneID:1235123"
CDS 307530..309989
/gene="cyaN"
/locus_tag="SMa0579"
/function="Small molecule metabolism; Global functions"
/note="glimmer prediction Contains domain in carboxyl
terminus that matches (e-31) adenyl cyclases. ProDom
scores lower (e-7) to adenyl cyclase motifs"
/codon_start=1
/transl_table=11
/product="guanylate cyclase"
/protein_id="NP_435549.2"
/db_xref="GI:193782586"
/db_xref="GeneID:1235123"
/translation="MFDRLGVRGRLLFAFFGISAFAVLATVGALYAFLELSQVLERVT
ERRAPSALASLELSRHAERVAATAPAFLASTSRARHSEVSAAIGSEMARLEELLAALK
GATLSSGVVSEIEDAVVGLRRNLHALDDLVTVRLAAVARKEELLRRLSATTNASQRLV
APGILVMNSKVPRWRAATADAVTTPEAEAAATRDLARAIAAYIPQQTAQREIAAINDT
LLQAAVAPTPGDLSLISFPLRRSIETLESVTPEFDEQLRKRFQQLVDQFEALIDGQRS
IPNARNEELAVVAEGEKLVVENDKLSRKLTLAVDRLVAAAKGDIAEAGSEAATVRRYG
TGVVLGSALLSLLSSVLIVWLYVDRNLLARLTGLSHSMLAIAAGDLRVPLPQTRGDEI
GRMAKALRVFRDTAIEVEEKNLRTVAEARQRLIDAIESISEGFAFYDSEDRLLVCNSR
YRDILYPGMDDTVVSGTHFEAIIRAAAERGLIEDAIGREQEWLAERLEAHRNPTGTLL
QQRGPDRWIQISERRISGGGTVAVYSDITELKRREQDLSEKSVALEALSAKLAKYLAP
QVYNSIFSGKQDVRIESRRKKLTICFSDIAAFTETTDKMESEELTQLLNQYLTEMSKI
ALSFGATIDKYVGDAILMFFGDPETRGIREDAIACVSMALAMQERMGELGETWRSVGI
EMPLRCRIGIHTDYCTVGNFGSEDRMDYTIIGGAVNLAARLEEEAAPGSVLISYETFA
QVKDLIHCEETGRVQIRGIAYPVATYRVVDFKANLTKSCNAIRTELPHLRLEAEPELM
STGEREVAITALRETLDRLRR"
misc_feature 308610..308741
/gene="cyaN"
/locus_tag="SMa0579"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(308610..308615,308622..308627,308631..308636,
308643..308648,308652..308654,308700..308705,
308709..308714,308721..308726,308730..308735)
/gene="cyaN"
/locus_tag="SMa0579"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 308811..309161
/gene="cyaN"
/locus_tag="SMa0579"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:221813"
misc_feature 309267..309839
/gene="cyaN"
/locus_tag="SMa0579"
/note="Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms]; Region:
CyaA; COG2114"
/db_xref="CDD:225025"
misc_feature 309291..309833
/gene="cyaN"
/locus_tag="SMa0579"
/note="cyclase homology domain; Region: CHD; cd07302"
/db_xref="CDD:143636"
misc_feature order(309303..309305,309309..309326,309429..309431,
309435..309443,309450..309452,309660..309668,
309678..309683,309690..309695,309798..309800)
/gene="cyaN"
/locus_tag="SMa0579"
/note="nucleotidyl binding site; other site"
/db_xref="CDD:143636"
misc_feature order(309309..309311,309441..309443)
/gene="cyaN"
/locus_tag="SMa0579"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143636"
misc_feature order(309324..309326,309360..309362,309369..309374,
309381..309383,309393..309395,309429..309434,
309621..309623,309630..309632,309663..309674,
309681..309683,309798..309800)
/gene="cyaN"
/locus_tag="SMa0579"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143636"
gene complement(310425..311225)
/gene="nrtC"
/locus_tag="SMa0581"
/db_xref="GeneID:1235125"
CDS complement(310425..311225)
/gene="nrtC"
/locus_tag="SMa0581"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction Excellent match (e-87) to
nitrate transport protein ATP binding component nasD from
Klebsiella oxytoca starting at amino acid 35 of glimmer
prediction. Met33 of glimmer prediction has good SD
sequence and was called SMA0581 start. ChrD, NasD and NrtC
are synonyms. Possible operon with SMA0581, SMA0583 and
SMA0585"
/codon_start=1
/transl_table=11
/product="nitrate ABC transporter ATP-binding protein"
/protein_id="NP_435551.1"
/db_xref="GI:16262758"
/db_xref="GeneID:1235125"
/translation="MTKSYLSLELLDKSFERGGTRTEVLKQVSLTVDKGEFISIIGHS
GCGKSTLLNIVGGLTQATTGVVLLDGKVVDEPGPDRAVVFQNHSLLPWLTVYENVRLA
VDKVFSRTRNKQERHEWTMRNLELVQMAHAAEKHPSEVSGGMKQRVGIARALAMEPKV
LLLDEPFGALDALTRAHLQDQVMQIHATLGNTVLMITHDVDEAVLLSDRIVMMTNGPS
ARVGEILDVPLARPRRRIELASDRTYLTCRESVLKFLYERHRFVEAAE"
misc_feature complement(310440..311219)
/gene="nrtC"
/locus_tag="SMa0581"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:224041"
misc_feature complement(310539..311210)
/gene="nrtC"
/locus_tag="SMa0581"
/note="ATP-binding cassette domain of the nitrate and
sulfonate transporters; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:213260"
misc_feature complement(311079..311102)
/gene="nrtC"
/locus_tag="SMa0581"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213260"
misc_feature complement(order(310632..310634,310731..310736,
310971..310973,311076..311084,311088..311093))
/gene="nrtC"
/locus_tag="SMa0581"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213260"
misc_feature complement(310971..310982)
/gene="nrtC"
/locus_tag="SMa0581"
/note="Q-loop/lid; other site"
/db_xref="CDD:213260"
misc_feature complement(310779..310808)
/gene="nrtC"
/locus_tag="SMa0581"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213260"
misc_feature complement(310731..310748)
/gene="nrtC"
/locus_tag="SMa0581"
/note="Walker B; other site"
/db_xref="CDD:213260"
misc_feature complement(310713..310724)
/gene="nrtC"
/locus_tag="SMa0581"
/note="D-loop; other site"
/db_xref="CDD:213260"
misc_feature complement(310626..310646)
/gene="nrtC"
/locus_tag="SMa0581"
/note="H-loop/switch region; other site"
/db_xref="CDD:213260"
gene complement(311239..312132)
/gene="nrtB"
/locus_tag="SMa0583"
/db_xref="GeneID:1235126"
CDS complement(311239..312132)
/gene="nrtB"
/locus_tag="SMa0583"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction Possible operon with SMA0581,
SMA0583 and SMA0585. Excellent match to nitrate transport
proteins in Klebsiella (NasB) and cyanobacteria (NtrB)"
/codon_start=1
/transl_table=11
/product="nitrate ABC transporter permease"
/protein_id="NP_435552.1"
/db_xref="GI:16262759"
/db_xref="GeneID:1235126"
/translation="MSVTNLKLKPQATPQTAAQVIALGQTASRGIDGRLSRFVTQTVT
NLLPLLVTLTFFTLAWQLICSSPESSLPAPSRVLEESWELIAHPFYIGQGVDQGLFWH
VFASLQRVALGYAMAAAVGVALGTLVGQSALAMRGLDPIFQVLRTVPPLAWLPLSLAA
FQDGTPSAIFVIFITAIWPIIINTAVGIRNIPQDYQNVAKVLRLNSFEYFGKIMLPAA
APYIFTGLRIGIGLSWLAIVAAEMLIGGVGIGFFIWDAWNSSLISDIIVALIYVGIVG
FLLDRLIALVGRAVTRGTANA"
misc_feature complement(311257..311958)
/gene="nrtB"
/locus_tag="SMa0583"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:223673"
misc_feature complement(311299..>311652)
/gene="nrtB"
/locus_tag="SMa0583"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(311341..311343,311371..311373,
311380..311382,311410..311412,311626..311628))
/gene="nrtB"
/locus_tag="SMa0583"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(311305..311310,311317..311322,
311326..311331,311338..311343,311371..311376,
311407..311412,311419..311430,311449..311451,
311458..311463,311503..311505,311554..311556,
311563..311568,311578..311580,311584..311589,
311596..311598,311602..311604,311608..311613))
/gene="nrtB"
/locus_tag="SMa0583"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(311482..311484,311494..311499,
311515..311553))
/gene="nrtB"
/locus_tag="SMa0583"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(312195..313487)
/gene="nrtA"
/locus_tag="SMa0585"
/db_xref="GeneID:1235127"
CDS complement(312195..313487)
/gene="nrtA"
/locus_tag="SMa0585"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction Excellent match (e-143) with
nitrate binding protein precursor proteins from several
cyanobacteria. Possible operon with SMA0581, SMA0583 and
SMA0585"
/codon_start=1
/transl_table=11
/product="nitrate ABC transporter substrate-binding
protein"
/protein_id="NP_435553.1"
/db_xref="GI:16262760"
/db_xref="GeneID:1235127"
/translation="MTKTLFGGLTRRSVLKTTATAAMVGAARTLLPSGAFAQGAGPET
AKATLGFIALTDSAPLIIAKEKGLFDKYGMTEVEVVKQASWGTTRDNLVLGSAGAGID
GAHILTPMPYLISTGKVTQNNQPLPMAILARLNLDAQAISVGAAYADLKVGIDASVLK
DAFAKKKAGGEAAKVAMTFPGGTHDLWIRYWLAAAGIDPDKDVETIVVPPPQMVANMK
VGTMDCFCVGEPWNEQLVNQKIGYTAVNTAEIWAEHPEKSFAMRADWVEKNPRAVKAL
VMAIEEAAQWCDDMANKDELAKIVGKRSWFNVPPKDIVDRLKGEYDYGNGKIVENSPH
FMKFWREHASYPFQSHDAWFLTENIRWGKLASDTDIKGLIAKVNREDIWREAAKDLGI
SDIPASTSRGPETFFDGKVFDPANPETYLKSLAISRIA"
misc_feature complement(312384..313445)
/gene="nrtA"
/locus_tag="SMa0585"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
systems, periplasmic components [Inorganic ion transport
and metabolism]; Region: TauA; COG0715"
/db_xref="CDD:223787"
misc_feature complement(312585..313367)
/gene="nrtA"
/locus_tag="SMa0585"
/note="NMT1-like family; Region: NMT1_2; pfam13379"
/db_xref="CDD:222087"
gene 314305..314763
/locus_tag="SMa0590"
/db_xref="GeneID:1235128"
CDS 314305..314763
/locus_tag="SMa0590"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435554.1"
/db_xref="GI:16262761"
/db_xref="GeneID:1235128"
/translation="MICGPYHDSVRFAANCAAGCLSYLSDTRGRFGRLPGEAGAQFVA
RHVVSPAREGGTDDGRGGSGYHAPTPNPRILASQTQAQDQSDHRQERTDSLSRHRSRQ
SGRQRAAFALTGAPHPSMARRRGRRAPTAAMRAVKTYPRPRPGVCAIWPS"
repeat_region 314549..314988
/standard_name="ISRm17"
/note="SMa4002; predicted by homology, possible ISRm17
fragment, 92% identical over length to ISRm17"
/rpt_family="ISRm17"
gene 314792..314986
/locus_tag="SMa0591"
/db_xref="GeneID:1235129"
CDS 314792..314986
/locus_tag="SMa0591"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction Excellent match to 64 amino
acids at carboxyl terminus of much larger (44 kDa) protein
from Sinorhizobium NGR234"
/codon_start=1
/transl_table=11
/product="transposase, fragment"
/protein_id="NP_435555.1"
/db_xref="GI:16262762"
/db_xref="GeneID:1235129"
/translation="MVRSRWVYRKLRNFRAGIEAGISGLTRTYGLAHCTWRGLHHFET
YVSSSVVAYNLALFARLRPT"
misc_feature <314792..314983
/locus_tag="SMa0591"
/note="Transposase and inactivated derivatives, IS5 family
[DNA replication, recombination, and repair]; Region:
COG3039"
/db_xref="CDD:225581"
gene 315280..316452
/locus_tag="SMa0592"
/db_xref="GeneID:1235130"
CDS 315280..316452
/locus_tag="SMa0592"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction match (e-19) to two similar size
(45 kDa) proteins in Sinorhizobium sp. NGR234 over entire
length"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435556.1"
/db_xref="GI:16262763"
/db_xref="GeneID:1235130"
/translation="MALRSANILFKDETAGTLVETANGGTRFAYHSDWNEGNIACCFP
STQREHEWKVGLHPFFQHLGPEGWLREQQARSAHIVEEDDLGLLLRYGADCIGAVSIR
PPDDAAQLPEITEATVSPGRTVSGVQKKLLVTKDDENRFVPASATGSALYIAKFNSDR
IDNLVRNELLSLRWTAAVLGEREVTGFTASLTAVVDETALIVTRFDRRPNGEKLRLED
CAQILSKPKGQDYAGKYDAAYEDIAAIIRQHSSRAPIDLLRFFNRLIVFTLIGNCDAH
LKNFSLLETPTGLRLSPAYDVVNTAFYDGFDQTLALSIGGEKIHLEAANQAIFRAFGK
EIGLPDRAIDQTFKQLKRQVEKAASIIRPPDAEPADGFVHRFKEIVDNSCLRILET"
misc_feature 315280..316446
/locus_tag="SMa0592"
/note="Toxin module HipA, protein kinase of
phosphatidylinositol 3/4-kinase superfamily [General
function prediction only]; Region: HipA; COG3550"
/db_xref="CDD:226080"
misc_feature 315295..315585
/locus_tag="SMa0592"
/note="HipA N-terminal domain; Region: Couple_hipA;
pfam13657"
/db_xref="CDD:222293"
misc_feature 315649..315900
/locus_tag="SMa0592"
/note="HipA-like N-terminal domain; Region: HipA_N;
pfam07805"
/db_xref="CDD:219588"
misc_feature 315916..316167
/locus_tag="SMa0592"
/note="HipA-like C-terminal domain; Region: HipA_C;
pfam07804"
/db_xref="CDD:219587"
gene 316428..317459
/locus_tag="SMa0594"
/db_xref="GeneID:1235131"
CDS 316428..317459
/locus_tag="SMa0594"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435557.1"
/db_xref="GI:16262764"
/db_xref="GeneID:1235131"
/translation="MPENTGNIAPLAWQRYVEEALRRRKAEGLTQKHHSALAGVSHPT
MAAFERGETTLTLAKALDILRVVGLVDEPTEGDTQARFVRDAFERWRNLVAPLPQDSP
ARFPNGWYRFDYWLEGDLKMSELTAFERILEKAVVRKTGWPPFWLPTREAIQPREVDG
LIECWLAPQGEEVERGFNDPAHCDFWRAAPSGRMFLIRGYQEDGAETFPAGTILDTTL
PLWRMGEVLLHAEKLASLLRKDADTAVTVHFRAMFTGLRGRVLRSWANPLSDLLVEGH
GARSDEAVLEAKFSANDIESRLAECMLPLLTSLYERFGVAGLSLNRVEAEVQRLLNSP
ISKERRPRR"
misc_feature 316482..316634
/locus_tag="SMa0594"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature order(316491..316493,316500..316502,316575..316577)
/locus_tag="SMa0594"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(316497..316499,316572..316574)
/locus_tag="SMa0594"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature order(316518..316523,316554..316556,316563..316565,
316575..316580)
/locus_tag="SMa0594"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene complement(318078..319409)
/locus_tag="SMa0599"
/db_xref="GeneID:1235133"
CDS complement(318078..319409)
/locus_tag="SMa0599"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435559.2"
/db_xref="GI:193782587"
/db_xref="GeneID:1235133"
/translation="MGKQVTGHNRCTIHSGLFRPLQSIVVCGMLVVVAGCGGHPKGVL
TPVADSMPATSRVEMLITTTRGRSEVPGEMFTGERARAPAFANITVSIPPVRKVGEVA
WPKKLPSNPATDFATLKADDLTRDGAKTWLNTTVSKSPDRSVLVFVHGFNNRFEDSVY
RFAQIVHDSGIKSAPVLVTWPSRGSLLAYGYDRESTNYTRNALESLFQYLAEDGEVKE
VSILAHSMGNWLTLEALRQMAIRNDGLPAKFKNVMLAAPDVDVDVFRSQIEDMGSQHP
RFTLFVSRDDRALAFSRRVWGDIPRLGSIDPEADPYKQELAENEITVIDLTKVKAGDG
MHHGKFAESPEVVRLIGARISEGQPLTDSRMGLGDHLIAGTTGAAAAAGSAAGLILAA
PVAVIDPHTRDNYANHVGAAMGQSDGKQKIAVTDCVSRQSAERDPACAPQN"
misc_feature complement(318198..319319)
/locus_tag="SMa0599"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4782"
/db_xref="CDD:227121"
gene complement(319553..321799)
/locus_tag="SMa0601"
/db_xref="GeneID:1235134"
CDS complement(319553..321799)
/locus_tag="SMa0601"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction, start codon changed based on
codon usage; match to cya3 adenyl cyclase of S. meliloti
but not to adenyl cyclases that matched with cya3. cya3
match over carboxyl 50% of protein. Catalytic domain is
not present"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435560.2"
/db_xref="GI:193782588"
/db_xref="GeneID:1235134"
/translation="MIHAAASEAEKPQSTDSRCLAQLARIRQSAEFDATGREHRFLQY
VVEETLAGRGSRIKAYTVAVEVFGRDSTFDPQNDPIVRIAASHLRRSLERYYLTAGKS
DPIVIGIPKGGYLPTFSERGSPEDANAAESSMPTMQAQAAGPSDASPVAARPPPGPGP
GPGPDDVRAQFERIVSSKEFHGGGRGDALLRYIIEETLAGRAERIKGYSIAIEVFKRD
KSFTQDDPVVRIEAARLRRALERYYLVAGQNDPLRIEVPKGGYGPTFSWKEAVRAESD
RTAVPDASGPIVSARRRGRVLLTVGVVAVAAAAILGYWTIDRPGSVSSLRAGSVSVPD
GPTLVIAPFANLGEGPNAELYTDGVTEELLTALPRFKEIKVFGRETSKSLPPDVDVSQ
VRDELGARYLLAGGVRVSGSRIRVTARLVDASDGAILWSEDYDNDLQSRDLFAIQSDV
ASKVATAVAQPYGIIAQTDAANPPPDDLGAYSCTLSFYDYRAELSAERHAKVSACLES
AVARYPGYATAWAMLSIAHLDEERFKFNPKSGAPMAMERALQAARRAVQLDPGNTRGL
QALMTALFFNGQYAEAMRTGEQALAMNSNDTELMGELGTRVAMGGQWQRGAALLDRAI
ALNPGGAGYYHGTRALAAHMLGDHPAAVAGIRQADLQKFPLFHAVASVIYAEAGMLHE
ARRAGETFMRRRPDFVPNLQAEFMMRNLQPKDQLRLVSGLRKAGFSIPDGVEASIAAA
EAADAKSR"
misc_feature complement(320408..320866)
/locus_tag="SMa0601"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5616"
/db_xref="CDD:227903"
misc_feature complement(319916..320104)
/locus_tag="SMa0601"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:222112"
misc_feature complement(319808..320086)
/locus_tag="SMa0601"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature complement(order(319865..319870,319877..319882,
319895..319900,319973..319978,319985..319990,
319994..319999,320084..320086))
/locus_tag="SMa0601"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature complement(order(319826..319828,319835..319837,
319847..319849,319883..319885,319931..319933,
319940..319942,319952..319954,319988..319990,
320033..320035,320042..320044,320054..320056))
/locus_tag="SMa0601"
/note="TPR motif; other site"
/db_xref="CDD:238112"
gene 322421..323233
/locus_tag="SMa0604"
/db_xref="GeneID:1235135"
CDS 322421..323233
/locus_tag="SMa0604"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction match (6e-15) to most of
Synechococcus hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435561.2"
/db_xref="GI:193782589"
/db_xref="GeneID:1235135"
/translation="MKQQNVGANLVSGTRRRAGGLAVAAMAVALSNAPSRAQSVINPD
ADSVLRAMTDQLQALQEFSVEYDTDHEVVQLDGEKIQYSASGRIAMSRSAGFRMTRQG
PYTDTEISFDGKVVSLYGKRLNVYARIDSPGPSIDEAVAEIQAATGFDAAGADFLSAD
PYAALAEGVLSGSLVGTAFVGGMLCDHLAFRNDDVDWELWISKGEQNLPLKYVITTKW
VTGSPQYTLRFRNWATGGVSSKSFEFKPPTDARKVDVVHTDVVGDLLLEAQQ"
misc_feature 322421..323230
/locus_tag="SMa0604"
/note="Predicted periplasmic protein [Function unknown];
Region: COG3900"
/db_xref="CDD:226416"
gene 323230..323565
/locus_tag="SMa0606"
/db_xref="GeneID:1235136"
CDS 323230..323565
/locus_tag="SMa0606"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435562.1"
/db_xref="GI:16262769"
/db_xref="GeneID:1235136"
/translation="MSMKRTSHRYISAAAMIAALVTVDGWTARLSGHGAVFIGNAQAR
VGRPLTPASVAGVARRTTRRTIRRSAIYVAALPAACVKTSVSGTVLWQCGATYYQPYG
GRYVVVYVD"
gene 323618..325168
/locus_tag="SMa0607"
/db_xref="GeneID:1235137"
CDS 323618..325168
/locus_tag="SMa0607"
/function="Miscellaneous; Unknown"
/note="glimmer prediction, start codon changed based on
codon usage pattern."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435563.1"
/db_xref="GI:16262770"
/db_xref="GeneID:1235137"
/translation="MKIARKYGPIAAAFVAALAITTSYAQSPTPGYNTKIPEQILTPD
KVESSIGTLNFADGVPTAETAGKIYDYLDTLRGVEVFLNFMPAASLEALRMGNAEMGA
TKANQALIFDQLLDSNPLLLTGNTDTVYCSVFLDLETDGPTVVEVPPGTGPGTVNDAF
FRFVIDMGAPGPDQGKGGKYLIVPADYKGDLPKDKSEGGEYYVARSPSHVNWLILRGF
LVDGKPDAASKLFREGLKVYPLAKKSNPPKMEFLDGSKVAFNTVHANTFEFYKELDHV
IQKEPIDLFDPELRGLAAGIGIRKGRSFAPDDRMTKILTDAVGIGNATARSIAFHNRD
PRSPLYPNSQWRSGFVGSDYRWIDLDGVSGRNKDARTNFFYMATVNTPAMAAKLIGKG
SQYALITADATGNAFDGAKTYRLNVPSNPPAKDFWSVVLYDPQTRSELQTSQPFPSRN
SKRDKLVANADGSVDLYFGPKAPAGKDSNWIETVPGKGWFSLLRLYGPLEPWFDKTWR
PGEIEEVR"
misc_feature 323768..325165
/locus_tag="SMa0607"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5361"
/db_xref="CDD:227659"
misc_feature 323933..324331
/locus_tag="SMa0607"
/note="Protein of unknown function (DUF1254); Region:
DUF1254; pfam06863"
/db_xref="CDD:219206"
misc_feature 324989..325120
/locus_tag="SMa0607"
/note="Protein of unknown function (DUF1214); Region:
DUF1214; pfam06742"
/db_xref="CDD:219156"
gene 325226..325801
/locus_tag="SMa0609"
/db_xref="GeneID:1235138"
CDS 325226..325801
/locus_tag="SMa0609"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435564.1"
/db_xref="GI:16262771"
/db_xref="GeneID:1235138"
/translation="MITKRDLLRSAAIGALVAATANSTTVIAQDKAEWPSPLEAKDIA
EEGFIYGLPLVMNYAVMQEFAVNRDSGQFKAPFNEINNMHQLASPEDTAIITPNSDTP
YSILWLDLRVEPVVVSVPAVDKERYYSVQLIDGNTYNFGYIGSRATGTEPGSYLVVGP
DWKARSPRASSRSSDRPPRSYSPTFGPSLST"
misc_feature <325226..325717
/locus_tag="SMa0609"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5361"
/db_xref="CDD:227659"
misc_feature 325457..>325717
/locus_tag="SMa0609"
/note="Protein of unknown function (DUF1254); Region:
DUF1254; pfam06863"
/db_xref="CDD:219206"
gene 325807..326667
/locus_tag="SMa0610"
/db_xref="GeneID:1235139"
CDS 325807..326667
/locus_tag="SMa0610"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435565.1"
/db_xref="GI:16262772"
/db_xref="GeneID:1235139"
/translation="MPNVEKVQAGYKAQPLSAFLKQPAPTAAPEIAFVPATTAGIKDN
FFQYLDAALQFVPETLRDNAIRAKLAKIGIGPGKTFEFKELSLEHKAEMLISVKQGDD
KINKWLASGNKPINRWNVSSLLGDEVFFNGDWLRRAGAAKAGLYGNDAVEAMYPFTRT
DATGEPLDGSKHKYTLTFPPGQLPPVNAFWSVTMYDGKSQFLVKNPINRYLINSPMLP
GMKTEPDGSVTLYIQEDNPGAGKEANWLPAPDGPIYLVMRLYWPKTTPPSILPAGKGT
WQPPGVKRVS"
misc_feature <325816..326664
/locus_tag="SMa0610"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5361"
/db_xref="CDD:227659"
misc_feature <326215..326586
/locus_tag="SMa0610"
/note="Protein of unknown function (DUF1214); Region:
DUF1214; cl08447"
/db_xref="CDD:244961"
gene 326972..328627
/gene="fixN3"
/locus_tag="SMa0612"
/db_xref="GeneID:1235140"
CDS 326972..328627
/gene="fixN3"
/locus_tag="SMa0612"
/EC_number="1.9.3.1"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="CcoN; FixN"
/codon_start=1
/transl_table=11
/product="cbb3-type cytochrome c oxidase subunit I"
/protein_id="NP_435566.1"
/db_xref="GI:16262773"
/db_xref="GeneID:1235140"
/translation="MGQLTTRERDLAAAILLVLAIVGIAMAAAGRFDPLGVHGAVVLL
YSLALLYLIMSSSFGPPPDPSRISRYYDDPIKAGVWFTLFWAIFGMFIGVWAAAQLAW
PSLNFDTAWASFGRIRPAHTTGVIFGFGGNALIATSFHVVQRTSRARLADQLSPWFVL
FGYNLFCILAVTGYFMGVTQSKEYAEAEWYADLWLVIVWVTYFILYIRTLARRREPHI
YVANWYYMAFIVVVAILHIINNLTVPVSLGHAKSYTIWSGVQDSMVQWWYGHNAVAFF
LTAGFLAMLYYYLPKRAERPIFSYRLSILSFWGITFFYMWAGSHHLHYTALPHWVQNL
GMTFSVMLLVPSWASAGNALLTLNGAWHKVRDDATLRFIMMAAFFYGLSTFEGSFLAV
RPVNSLSHYTDWTVGHVHAGALGWVALITYGSLYTLVPAIWKRERMYSAALVEVHFWL
AFAGTVIYVFAMWNSGIIQGLMWRTYTGDGTLAYSFVDSLVAMYPYYIARAFGGLLFL
IGAVVATYNIWMTVRGVPALAERHGDVPVAAPLPEGAATGPAE"
misc_feature 327062..328537
/gene="fixN3"
/locus_tag="SMa0612"
/note="Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3
oxidase, the terminal oxidase in the respiratory chains of
proteobacteria, is a multi-chain transmembrane protein
located in the cell membrane. Like other cytochrome
oxidases, it catalyzes the reduction...; Region:
cbb3_Oxidase_I; cd01661"
/db_xref="CDD:238831"
misc_feature order(327200..327202,328199..328201,328211..328213,
328343..328345,328454..328456)
/gene="fixN3"
/locus_tag="SMa0612"
/note="Low-spin heme binding site [chemical binding];
other site"
/db_xref="CDD:238831"
misc_feature 327206..328492
/gene="fixN3"
/locus_tag="SMa0612"
/note="Cytochrome C and Quinol oxidase polypeptide I;
Region: COX1; pfam00115"
/db_xref="CDD:215728"
misc_feature order(327740..327742,327755..327760,328157..328159,
328169..328174,328388..328390)
/gene="fixN3"
/locus_tag="SMa0612"
/note="Putative water exit pathway; other site"
/db_xref="CDD:238831"
misc_feature order(327779..327781,327929..327934,328193..328195)
/gene="fixN3"
/locus_tag="SMa0612"
/note="Binuclear center (active site) [active]"
/db_xref="CDD:238831"
misc_feature order(327932..327934,328169..328174,328388..328393)
/gene="fixN3"
/locus_tag="SMa0612"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:238831"
gene 328632..329384
/gene="fixO3"
/locus_tag="SMa0615"
/db_xref="GeneID:1235141"
CDS 328632..329384
/gene="fixO3"
/locus_tag="SMa0615"
/EC_number="1.9.3.1"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="CcoO; FixO"
/codon_start=1
/transl_table=11
/product="cbb3-type cytochrome c oxidase subunit II"
/protein_id="NP_435567.1"
/db_xref="GI:16262774"
/db_xref="GeneID:1235141"
/translation="MRELIHRKLERTAIGFVLAIILAASVGGIVEIAPLFTIDETVED
VEDMRLYTPLELAGRNIYIREGCYACHSQMIRTLRDEVERYGPFSLAVESKYDHPMLW
GSKRTGPDLARVGGKYSDFWHVAHLTNPRDVVPESNMPAYAWLARTPLRLDDLGSHLE
AQRSVGVPYTDEMIENAARDAFGQAVPDSEQASGVTERYGDETQVSAFDGVATRVTEM
DALVAYLQVLGRLTKAAYQNTAAPEQVPDPTN"
misc_feature 328644..329351
/gene="fixO3"
/locus_tag="SMa0615"
/note="Cbb3-type cytochrome oxidase, cytochrome c subunit
[Energy production and conversion]; Region: CcoO; COG2993"
/db_xref="CDD:225540"
misc_feature 328647..329330
/gene="fixO3"
/locus_tag="SMa0615"
/note="Cytochrome C oxidase, mono-heme subunit/FixO;
Region: FixO; pfam02433"
/db_xref="CDD:111339"
gene 329407..329577
/gene="fixQ3"
/locus_tag="SMa0616"
/db_xref="GeneID:1235142"
CDS 329407..329577
/gene="fixQ3"
/locus_tag="SMa0616"
/EC_number="1.9.3.1"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="glimmer prediction match (7e-7) to Azorhizobium
caulinodans but not to other members of FixQ family"
/codon_start=1
/transl_table=11
/product="FixQ3 nitrogen fixation protein"
/protein_id="NP_435568.1"
/db_xref="GI:16262775"
/db_xref="GeneID:1235142"
/translation="MEVTHETLVEAAKTWGLFYLIGFSICVIVYAFWPANRERFDRAK
RGILEEDDQPWT"
misc_feature 329416..329553
/gene="fixQ3"
/locus_tag="SMa0616"
/note="Cytochrome cbb oxidase CcoQ. Cytochrome cbb3
oxidase, the terminal oxidase in the respiratory chains of
proteobacteria, is a multi-chain transmembrane protein
located in the cell membrane. Like other cytochrome
oxidases, it catalyzes the reduction of O2...; Region:
cbb3_Oxidase_CcoQ; cd01324"
/db_xref="CDD:238647"
gene 329568..330449
/gene="fixP3"
/locus_tag="SMa0617"
/db_xref="GeneID:1235143"
CDS 329568..330449
/gene="fixP3"
/locus_tag="SMa0617"
/EC_number="1.9.3.1"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="good match to FixP proteins over entire length"
/codon_start=1
/transl_table=11
/product="FixP3 Diheme c-type cytochrome"
/protein_id="NP_435569.1"
/db_xref="GI:16262776"
/db_xref="GeneID:1235143"
/translation="MDVEEVDPISGRRTTGHEWNGIKELDTPVPRGVLLFLVVTHVFA
LLWWVLLPTWPLGTTYTKGLLGIDERNVVEEKLAAAAAARAVWEKRIDTLSYEQIRAD
EQLMATVRSTGHQLFGDNCAVCHGIDGKGRSNYPDLTDDDWLWGGGPEDIEQTLRVGI
NTRHPESRVAQMPSFGREQMLERNQVRDVAAYVYSLTNPGYSTPENIGRIEAGREVFL
TSCAACHGENARGSREVGAPNLTDAYWIYGGTMQTIIESVHGGRQGHMPTWDERLTSA
EIKILALYINSLGVEKP"
misc_feature 329607..330434
/gene="fixP3"
/locus_tag="SMa0617"
/note="cytochrome c oxidase, cbb3-type, subunit III;
Region: ccoP; TIGR00782"
/db_xref="CDD:129864"
misc_feature 329904..330155
/gene="fixP3"
/locus_tag="SMa0617"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:215669"
misc_feature 330201..330431
/gene="fixP3"
/locus_tag="SMa0617"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:215669"
gene 330668..331474
/locus_tag="SMa0620"
/db_xref="GeneID:1235144"
CDS 330668..331474
/locus_tag="SMa0620"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435570.1"
/db_xref="GI:16262777"
/db_xref="GeneID:1235144"
/translation="MSGTGKLQRWVGEVSGIEETWNPKWQRHLPAQAPFEWLAKGWRD
LITYPMLSLSYGVAVFVVSFLIIWLLFATGRDYFLFPAVAGFMIIAPLLATGLYLKSS
RLERSEPVSLGSMLRVRPVAGAQVFFTGLLLCMLMLLWMRAAVLVYALFFGVRPFPGL
GHITQLLLTTPTGWAMLAVGIFIGALFAGFSFAISVFSIPMLLDQRIDAFTAMGVSVA
LVWNNLRPMLVWGAIVLGMFLVSVATAMIGLVVIFPLLGHATWHAYRAVR"
misc_feature 330668..331471
/locus_tag="SMa0620"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5473"
/db_xref="CDD:227760"
gene 331477..333744
/gene="fixI2"
/locus_tag="SMa0621"
/db_xref="GeneID:1235145"
CDS 331477..333744
/gene="fixI2"
/locus_tag="SMa0621"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/codon_start=1
/transl_table=11
/product="FixI2 E1-E2 type cation ATPase"
/protein_id="NP_435571.1"
/db_xref="GI:16262778"
/db_xref="GeneID:1235145"
/translation="MSCCSGIAVPSAGAASRTSISPEEIRLASRDLGDGLRQTAMTLP
DAHCAACIAAVEGALRKISGVELARVNLSARRVTINWRGNDDESPDFAAALAKIGYAS
HLASIEEETQDPVLASLLKALAVAGFSAMNIMILSVSVWSGADPATRHAFHLVSAALA
LPAIVYSGRFFYRSAWAALRHGRTNMDVPISVGVLLAFALSVYDTLHNAAFAYFDAST
SLLFVLLAGRTLDHLMRGRARSAVGALARLSPRGASVVQADEAIDYVPLSEIQPGMRL
LVAAGERVPVDGVVVKGASELDASIVSGESEWRRAAPGSALQAGVMNLANPLTLLATA
SVDGSFLAEMTRMMEAAESGRSTYRRIADRAASLYAPVVHGVALLSMVAWLFGTGDLH
KSVTIAIAVLVITCPCALGLAVPMVQVVAVRRLFERGIMARDGSAFERLNEIDTVLFD
KTGTLTLGEMRLVNAGDIQPRLLSLAAAMARVSRHPASVAIALADPRRPVAPVEFDSL
EEVHGCGIEGRAGDAVYRLGRPSWASTAKQVDLGTSSTTVLSKDAETIAVFAFEETVR
PGARELVQTLRSAGLSVRILSGDRSAAVSSIARQLDIEAFSAELLPGEKVEAIRALAA
TGRKVLMIGDGLNDAPALAAAHVSIAPSSATDVGRSASDFVFLGQSLLAVRDIIQTAA
RADVLIRQNFAMAIAYNVVSVPFAIGGVVTPLAAALAMSLSSIVVVGNALRQGAKVKK
GPRTFGATKPATAKI"
misc_feature 331582..333696
/gene="fixI2"
/locus_tag="SMa0621"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:225127"
misc_feature 331597..331776
/gene="fixI2"
/locus_tag="SMa0621"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature order(331612..331620,331627..331629)
/gene="fixI2"
/locus_tag="SMa0621"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
misc_feature 332134..332796
/gene="fixI2"
/locus_tag="SMa0621"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:215733"
misc_feature 333130..333426
/gene="fixI2"
/locus_tag="SMa0621"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 333235..333237
/gene="fixI2"
/locus_tag="SMa0621"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 333741..334001
/gene="fixS2"
/locus_tag="SMa0622"
/db_xref="GeneID:1235146"
CDS 333741..334001
/gene="fixS2"
/locus_tag="SMa0622"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/codon_start=1
/transl_table=11
/product="FixS2 nitrogen fixation protein"
/protein_id="NP_435572.1"
/db_xref="GI:16262779"
/db_xref="GeneID:1235146"
/translation="MNYLALLVPVALAMGFVGLLAFFWSLRSGQYDDLDGAAERILLD
DEEDEGPLPDPVRDGTASRRQRSPKEDGESKLYSGVSNAKHG"
misc_feature 333741..>333863
/gene="fixS2"
/locus_tag="SMa0622"
/note="Uncharacterized protein, possibly involved in
nitrogen fixation [Inorganic ion transport and
metabolism]; Region: FixS; COG3197"
/db_xref="CDD:225738"
gene 334433..334594
/locus_tag="SMa0625"
/db_xref="GeneID:1235147"
CDS 334433..334594
/locus_tag="SMa0625"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435573.1"
/db_xref="GI:16262780"
/db_xref="GeneID:1235147"
/translation="MMARERTGLSPALALVAAFMLFLQSVVHAFAGQPSDILPFDAFG
NSLCVTGTP"
gene 335117..336379
/locus_tag="SMa0626"
/db_xref="GeneID:1235148"
CDS 335117..336379
/locus_tag="SMa0626"
/function="Structural elements; Cell envelope"
/note="glimmer prediction domain in amino terminus matches
(e-15) outer membrane proteins, domain in carboxyl
terminus matches (e-16) hypothetical protein from
Synechococcus"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435574.1"
/db_xref="GI:16262781"
/db_xref="GeneID:1235148"
/translation="MSNAHITIFGDSKYDLRWRKSGRNASLCEGVARKLLMAGALVAA
TNVPCWSQSVADPVKQYSKESMQQALQTREQYDVHGLSFDTGQSTLQPGAKPLLDDIA
TALKNFPDWSLRIVGHTDASGSAESNERLSLERANTIKAALVERGIDAGKLLAAGAGQ
SRPIASNETDEGKALNRRVELMRFTDSAEAKKLLKAMSDYLAAQKAISFAYDANLQVV
TNSDQKLGLASSGTVTLSRPDKVHTTRSGGFVDVESLFDGKTLTLLGKNVNKYTQVEI
PGTVDHLVDELKDKYGLPLPAADLLLTNAYDELIQGVYDSKDLGSGVINGAECDSLAF
RKDDVDFQIWVAQGAQPHPCRLVITSRLVKGGPEYSVQIRDWKSGDGVTLGDFSFKNP
TDAEKIDVNDLKGTLGELPENFVGGGGK"
misc_feature 335117..335659
/locus_tag="SMa0626"
/note="Outer membrane protein and related
peptidoglycan-associated (lipo)proteins [Cell envelope
biogenesis, outer membrane]; Region: OmpA; COG2885"
/db_xref="CDD:225439"
misc_feature 335357..335662
/locus_tag="SMa0626"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature order(335369..335374,335471..335476,335483..335485,
335495..335500,335507..335509,335633..335635,
335645..335647)
/locus_tag="SMa0626"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
misc_feature 335651..336364
/locus_tag="SMa0626"
/note="Predicted periplasmic protein [Function unknown];
Region: COG3900"
/db_xref="CDD:226416"
gene 336766..337464
/gene="aqpZ2"
/locus_tag="SMa0627"
/db_xref="GeneID:1235149"
CDS 336766..337464
/gene="aqpZ2"
/locus_tag="SMa0627"
/function="Cell processes; Transport of small molecules"
/note="porin involved in osmoregulation allowing water to
move into and out of the cell in response to osmotic
pressure"
/codon_start=1
/transl_table=11
/product="aquaporin Z"
/protein_id="NP_435575.1"
/db_xref="GI:16262782"
/db_xref="GeneID:1235149"
/translation="MFKKLCAEFLGTCWLVLGGCGSAVLASAFPQVGIGLLGVSFAFG
LTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVI
ATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGSTHRRVPAGFA
PIAIGLALTLIHLVSIPVTNTSVNPARSTGQALFVGGWALSQLWLFWIAPLFGAAIAG
IVWKSVGEEFRPVD"
misc_feature 336772..337431
/gene="aqpZ2"
/locus_tag="SMa0627"
/note="Major intrinsic protein (MIP) superfamily. Members
of the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules, and
ions out of and between cells. The channel proteins share
a common fold: the N-terminal...; Region: MIP; cd00333"
/db_xref="CDD:238204"
misc_feature order(336892..336894,336946..336954,337303..337308,
337315..337317,337324..337326)
/gene="aqpZ2"
/locus_tag="SMa0627"
/note="amphipathic channel; other site"
/db_xref="CDD:238204"
misc_feature order(336952..336960,337315..337323)
/gene="aqpZ2"
/locus_tag="SMa0627"
/note="Asn-Pro-Ala signature motifs; other site"
/db_xref="CDD:238204"
gene complement(337732..338109)
/locus_tag="SMa0629"
/db_xref="GeneID:1235150"
CDS complement(337732..338109)
/locus_tag="SMa0629"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435576.1"
/db_xref="GI:16262783"
/db_xref="GeneID:1235150"
/translation="MNQFKIISAMDSHNFERKRASGPTKRDTLMLGREARRKTTLPLW
FRGFVAADRGDRPRLALGLVGARTAERLRRNARQISGAHSRPLDRRLGLAERHFVARC
NYAIQSNALVRNEFETRRREVLE"
gene complement(338133..339704)
/locus_tag="SMa0630"
/db_xref="GeneID:1235151"
CDS complement(338133..339704)
/locus_tag="SMa0630"
/function="Structural elements; Cell envelope"
/note="glimmer prediction carboxyl half of protein matches
(e-26) E. coli predicted membrane protein YbiO"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435577.1"
/db_xref="GI:16262784"
/db_xref="GeneID:1235151"
/translation="MASVGSFLAFEWPPLLRKIILTLLLAVIVFRVVRAIGKLLFALS
GASGIADQPPSVFESDAARRFWLSRISIIAGFLLFGWAIASLMPALSFSNEVTRLAAF
LFGLGILVTAVEVVWRRPDKPAPLVVKSLLTIYLVVLWSAWVAGLLGLLWLGIYSLLL
PPLVRGVGDVAQALATRAQRTGPPGIVLSVVIVRGARAAVIAAAVAWLAYIWRIRAAA
LAGSEPGAIVIPGLLNGIIALLVADLLWQMSKALIAYRMGLGPKDGSNVDELARSGRL
RTLLPIFRNVLAVFIGAVTVLTILSGLGVQIAPLIAGAGIFGVAIGFGSQTLVKDVLS
GVFYMLDDAFRVGEYIQSGSYKGTVESFSLRSVRLRHHRGPIFTVPFGELGAVQNMSR
DWVIDKMTLNVTYDADVDLARKLIKKVGQELAADPEFAADTIEPLKMQGVDSFGDFAI
VLRMKLMTKPGAQFTIKRRAFMMIKKAFDENGIKIAVPTVHVSGGSDNAAAAQQALNM
SKAAELAANKAPVGL"
misc_feature complement(338166..339086)
/locus_tag="SMa0630"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature complement(338250..338849)
/locus_tag="SMa0630"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene complement(339652..340218)
/locus_tag="SMa0631"
/db_xref="GeneID:1235152"
CDS complement(339652..340218)
/locus_tag="SMa0631"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435578.1"
/db_xref="GI:16262785"
/db_xref="GeneID:1235152"
/translation="MNSVQPIRIGFLLLAVAPILFWMLLGVSWAQQAPVGVPPEKAQQ
FLDLLSDPQVKTWLEGKIPSAAAEPPAGSPVETISSWEAAIRDRINGLMGAVPRIPEE
LARGAAVVSRDVNSGRPGLVVSILAVLIAVGLGAEWLIRRVFARARKSGANENAGQEI
LSEIACLADVCLGQRRFIPGIRMAALTA"
misc_feature complement(<339751..>340191)
/locus_tag="SMa0631"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:223740"
gene complement(340397..340783)
/locus_tag="SMa0633"
/db_xref="GeneID:1235153"
CDS complement(340397..340783)
/locus_tag="SMa0633"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435579.1"
/db_xref="GI:16262786"
/db_xref="GeneID:1235153"
/translation="MGTPVLDQVGFEMIVYVAEISGRGIAAFDAANDIEAQAQLANRG
LLRDLIVLQNEGRALWDGVADIHLRTATPEETEIWQTSRTAAVQSGEDSDDEGRHVFL
VPVVDPSHDNFDDDDNPHHDDDRDGD"
gene 341499..342152
/locus_tag="SMa0636"
/db_xref="GeneID:1235154"
CDS 341499..342152
/locus_tag="SMa0636"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction match (e-21) to several
hypothetical proteins from archaebacteria and eubacteria,
some over full length"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435580.1"
/db_xref="GI:16262787"
/db_xref="GeneID:1235154"
/translation="MTTKVVKLSPDDSVRQAAKLMFDHHVSGVPVVDDDGHLLGVISE
GDLIRRAELCSEASVLMADMAIDPDDRANAFIRRCSWRVGDVMTANPVTIEEEAPLAR
VAGLMQERGIKRIPVVRDGELVGIVSRADLLQAIFSTKPDETAAGDEAIRRSILVRLG
ENTSLEELDVTVTVTEGIVHFWGQVETAGCRRAARIMAESVHGVRGIVEHFPDPYTQ"
misc_feature 341499..341897
/locus_tag="SMa0636"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:30863"
misc_feature 341502..341903
/locus_tag="SMa0636"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the BON (bacterial OsmY and nodulation domain)
domain. BON is a putative phospholipid-binding domain
found in a family of osmotic shock protection...; Region:
CBS_pair_BON_assoc; cd04586"
/db_xref="CDD:73086"
misc_feature 341766..342125
/locus_tag="SMa0636"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair; cl15354"
/db_xref="CDD:210083"
gene 342592..342981
/locus_tag="SMa0637"
/db_xref="GeneID:1235155"
CDS 342592..342981
/locus_tag="SMa0637"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435581.1"
/db_xref="GI:16262788"
/db_xref="GeneID:1235155"
/translation="MNARVSFAREPLYRSQVAGAASWGVSALEDQQLAGLIMWVPAGM
IYVAAALAIAAALIGGSNTSFAGESNDDAGARGGKLPCVTAAFKTARITLSVRRGSSG
QCQIHASCPTRVRRLSRSLRAKRHGRR"
misc_feature <342610..342732
/locus_tag="SMa0637"
/note="Cytochrome c oxidase caa3 assembly factor
(Caa3_CtaG); Region: Caa3_CtaG; pfam09678"
/db_xref="CDD:220340"
gene 342978..343235
/locus_tag="SMa0638"
/db_xref="GeneID:1235156"
CDS 342978..343235
/locus_tag="SMa0638"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435582.1"
/db_xref="GI:16262789"
/db_xref="GeneID:1235156"
/translation="MTAAPVTEKSRYRSRPPSLYAPWWKSKEVITPSVIGGGASLLTV
IGGIPWQNLLLILVAFGAIAGFLYWRKNADRRAVARVEGMA"
misc_feature <343071..343175
/locus_tag="SMa0638"
/note="putative monovalent cation/H+ antiporter subunit D;
Reviewed; Region: PRK07234"
/db_xref="CDD:235978"
gene 343640..344044
/locus_tag="SMa0639"
/db_xref="GeneID:1235157"
CDS 343640..344044
/locus_tag="SMa0639"
/note="glimmer prediction match (3e-8) to immunoreactive
Brucella abortus protein in carboxyl half. Similar to
SMA1086 of S. meliloti pSyma"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435583.1"
/db_xref="GI:16262790"
/db_xref="GeneID:1235157"
/translation="MKAPTLAFAVLASAIGMSPAKAQTCIGICNGGTGGTTNHNLFIE
REYRDFLQQRYPNYGSRYRGMRPDISIGPGATVGGPRVGVRQQFRLRQRMVIDANKHL
RWCQERYLSYRLADDTFQPFEGARRPCNSPYN"
misc_feature 343940..344029
/locus_tag="SMa0639"
/note="BA14K-like protein; Region: BA14K; pfam07886"
/db_xref="CDD:203793"
gene 344135..344554
/locus_tag="SMa0640"
/db_xref="GeneID:1235158"
CDS 344135..344554
/locus_tag="SMa0640"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435584.1"
/db_xref="GI:16262791"
/db_xref="GeneID:1235158"
/translation="MRRRRNAPATAKRSSKSHQTTRAGDCLKHRNPKRWSQLRKGGLN
ITSILLSSYLALPADSLLGRDLGEGERQLEFAGKFHRSPRQAPDSGRSLPPAGRQSRL
RISAVEKQAAEAATSMKAVRIRSTASILTHDPHPLVQ"
gene 345407..345667
/locus_tag="SMa0643"
/db_xref="GeneID:1235159"
CDS 345407..345667
/locus_tag="SMa0643"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_435585.1"
/db_xref="GI:16262792"
/db_xref="GeneID:1235159"
/translation="MNPGKLNNWIDDAAISGLVAIARFARVLHRDLDAVCSAIELLWS
NGQAEGQINPLKTIKRAMYGRAGPELLRARMLPLDQNYRHKK"
misc_feature <345407..345634
/locus_tag="SMa0643"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3464"
/db_xref="CDD:33267"
misc_feature <345422..345631
/locus_tag="SMa0643"
/note="Transposase; Region: DDE_Tnp_ISL3; pfam01610"
/db_xref="CDD:201887"
gene 345684..345992
/locus_tag="SMa0645"
/db_xref="GeneID:1235160"
CDS 345684..345992
/locus_tag="SMa0645"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435586.1"
/db_xref="GI:16262793"
/db_xref="GeneID:1235160"
/translation="MQNDIGGELVHLEDLVLDDATKNVRTPTHELTIPLGLSAAGLRS
LRGRDFVSGSPAASSAADGTVEVTTDPDVDRSTEGRDESNGDVSVFGAEFVAIDAVLA
"
gene 346110..346361
/locus_tag="SMa0647"
/db_xref="GeneID:1235161"
CDS 346110..346361
/locus_tag="SMa0647"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction matches domain (15%) of
hypothetical protein Y4CF from Sinorhizobium pNGR234a
plasmid See SMA0649"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435587.1"
/db_xref="GI:16262794"
/db_xref="GeneID:1235161"
/translation="MLRQAHDLPPVLQAIVALDAWNVLSVLQHAPWLGRVLAASILRQ
AGVTASAHLATVNLGLETMPVERRRHRDRNFRLLALPMG"
misc_feature 346113..>346349
/locus_tag="SMa0647"
/note="Protein of unknown function (DUF1612); Region:
DUF1612; pfam07756"
/db_xref="CDD:149040"
gene 346342..346659
/locus_tag="SMa0649"
/db_xref="GeneID:1235162"
CDS 346342..346659
/locus_tag="SMa0649"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction matches domain (11%) of
hypothetical protein Y4CF from Sinorhizobium pNGR234a
plasmid. see SMA0647"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435588.2"
/db_xref="GI:193782590"
/db_xref="GeneID:1235162"
/translation="MRCPWADCSRRDRAEGARPAGAGKNDDGAKLKGRRTSSTLPELV
DLVMARPLVSASMVAKTLDVTPQAARRIVLELGLREIALVTVDDAASLVLRIVNTLQE
CFR"
misc_feature 346459..>346584
/locus_tag="SMa0649"
/note="HTH DNA binding domain; Region: HTH_13; pfam11972"
/db_xref="CDD:152407"
gene complement(347249..347851)
/locus_tag="SMa5027"
/db_xref="GeneID:6435265"
CDS complement(347249..347851)
/locus_tag="SMa5027"
/note="Possible secreted protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000343.1"
/db_xref="GI:193782591"
/db_xref="GeneID:6435265"
/translation="MARLPSMAAAALALAASFPLICVTTTPASAQSLSAGDDGGDISA
SDVRDFLRDALRARSDRRDLIRDLVPERQDRRDELLDLLGDGGDLMGDRGDRLERLRD
LLAARRDRPDDLMELIGDRGDRRERLMDLIAARRDRRDELMDLIGDRDDQGGGRGLLR
QRLLERLADGNDENCVFITRSLRAENGDWLAFVRRRVCRD"
repeat_region complement(348201..349286)
/standard_name="ISRm24"
/note="SMa4003"
/rpt_family="ISRm24"
gene complement(348248..349249)
/locus_tag="SMa0656"
/db_xref="GeneID:1235164"
CDS complement(348248..349249)
/locus_tag="SMa0656"
/function="Elements of external origin; Transposon-related
functions"
/note="glimmer prediction excellent fit (e-134) to
transposase in IS30 of Agrobacterium rhizogenes"
/codon_start=1
/transl_table=11
/product="TRm24 transposase"
/protein_id="NP_435590.1"
/db_xref="GI:16262797"
/db_xref="GeneID:1235164"
/translation="MSQCYLHLTLPDRRRVHQLLERKAPTAEIARQLGRHRSTIYREL
KRNTFHDAEFPEYSGYYSGIANDISKERRRRLRKLSRHPQLRELVIEQLKALWSPEQI
AGRLLADGVSAVRVCTETIYRFIYSKEDYALELYQHLPEGRRKRRPRRSRKPRDGSIP
LDCRISQRPDFIADRSQFGHWEGDLLIFRRDLGEANVTSLVERKSRYTVMIKNGSRHS
RPLIDKIIDAFSPLPAFARQSFTFDRGTEFRGFKALEDGLGARSWFCDPNSPWQKGAV
ENTNKRIRRFVPSDTDLSAVSQPQLVALAHHLNSLPRKCLGYRTPAEVFMAHLRDCG"
misc_feature complement(348251..349249)
/locus_tag="SMa0656"
/note="Transposase and inactivated derivatives, IS30
family [DNA replication, recombination, and repair];
Region: Tra8; COG2826"
/db_xref="CDD:225382"
misc_feature complement(349109..349240)
/locus_tag="SMa0656"
/note="Helix-turn-helix domain; Region: HTH_38; pfam13936"
/db_xref="CDD:206107"
misc_feature complement(order(349121..349129,349133..349138))
/locus_tag="SMa0656"
/note="DNA-binding interface [nucleotide binding]; DNA
binding site"
/db_xref="CDD:119388"
misc_feature complement(348389..348718)
/locus_tag="SMa0656"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
gene 349400..349597
/locus_tag="SMa0657"
/db_xref="GeneID:1235165"
CDS 349400..349597
/locus_tag="SMa0657"
/function="Small molecule metabolism; Energy transfer"
/note="glimmer prediction good match to amino terminus of
cytochrome c binding protein associated nitrate reductase
involved in denitrification. Frameshift relation to
SMA0659, the carboxyl terminus"
/codon_start=1
/transl_table=11
/product="cytochrome c binding protein, amino terminus"
/protein_id="NP_435591.1"
/db_xref="GI:16262798"
/db_xref="GeneID:1235165"
/translation="MTLGGFVGGVIFWGAFNTALELTNTEEFCVSCHEMRANVYEELR
RTVHFSNRSGPGVLSRLPRAA"
misc_feature 349400..>349564
/locus_tag="SMa0657"
/note="Nitrate/TMAO reductases, membrane-bound tetraheme
cytochrome c subunit [Energy production and conversion];
Region: TorC; COG3005"
/db_xref="CDD:225550"
misc_feature 349400..>349561
/locus_tag="SMa0657"
/note="cytochrome c-type protein NapC; Provisional;
Region: PRK10617; cl17554"
/db_xref="CDD:248108"
gene 349623..350021
/locus_tag="SMa0659"
/db_xref="GeneID:1235166"
CDS 349623..350021
/locus_tag="SMa0659"
/function="Small molecule metabolism; Energy transfer"
/note="glimmer prediction good match to carboxyl terminus
of cytochrome c binding protein associated nitrate
reductase involved in denitrification. Frameshift
relation to SMA0657, the amino terminus"
/codon_start=1
/transl_table=11
/product="cytochrome c binding protein, carboxyl terminus"
/protein_id="NP_435592.1"
/db_xref="GI:16262799"
/db_xref="GeneID:1235166"
/translation="MQASKEVWGKIFGSINTREKFLDHRLELAKHEWARLKANDSLEC
RNCHSSAAMDLSKQTQRAAEIHTRYLLPGKVTCIDCHKGIAHELPNMQGVEPGWKLPP
ELEGETLPSASATDELKKVMNDSHTVAFGN"
misc_feature <349623..349895
/locus_tag="SMa0659"
/note="periplasmic nitrate (or nitrite) reductase c-type
cytochrome, NapC/NirT family; Region: napC_nirT;
TIGR02161"
/db_xref="CDD:131216"
gene 350388..350867
/locus_tag="SMa0661"
/db_xref="GeneID:1235167"
CDS 350388..350867
/locus_tag="SMa0661"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435593.1"
/db_xref="GI:16262800"
/db_xref="GeneID:1235167"
/translation="MRATWAIPVAALVLLLDSSDGTAGQPGKSADQPSKYVPSVGEIM
NKIDLSRSKLWYSVKLRNWALAGYQLDQVKTGFDDVSRHHPDKSNFDFANVQKIANLI
EEAIVARSDEQFQQSFALMTTECNDCHRAVGKPFLHVGAPKVPSPYSDKMLEPGAFR"
gene complement(350925..351560)
/gene="fixK"
/locus_tag="SMa0662"
/db_xref="GeneID:1235168"
CDS complement(350925..351560)
/gene="fixK"
/locus_tag="SMa0662"
/function="Miscellaneous; Not classified regulator"
/note="transcriptional regulator that positively regulated
fixLJ operon; upregulated transcription by FixJ; part of
global network that controls expression of aerobic
respiratory terminal oxidases and carbon and nitrogen
metabolic enzymes"
/codon_start=1
/transl_table=11
/product="transcriptional regulator FixK"
/protein_id="NP_435594.1"
/db_xref="GI:16262801"
/db_xref="GeneID:1235168"
/translation="MNTSISASWGRYINAIPPRSGEAALAPLSSFVDGQCIYSFGERA
DQVYQVEFGAVRVYRLAANGRRQILAFHFGGNWFGLQSRDRHSSNAEAIGVTGVRCIS
LQEEPLFRPALFSAALDNVSAAQEHQLVIGRQSAIERVAAFLLEMSERSGYSRRFELS
MSRVDVADYLALTVETVSRSLTKLKHRGFIELHGARGIELVGYRALQNLCL"
misc_feature complement(350928..351560)
/gene="fixK"
/locus_tag="SMa0662"
/note="transcriptional regulator FixK; Provisional;
Region: fixK; PRK09391"
/db_xref="CDD:236494"
misc_feature complement(351249..351494)
/gene="fixK"
/locus_tag="SMa0662"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:237999"
misc_feature complement(order(351297..351305,351321..351326))
/gene="fixK"
/locus_tag="SMa0662"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:237999"
misc_feature complement(350961..351155)
/gene="fixK"
/locus_tag="SMa0662"
/note="helix_turn_helix, cAMP Regulatory protein
C-terminus; DNA binding domain of prokaryotic regulatory
proteins belonging to the catabolite activator protein
family; Region: HTH_CRP; cd00092"
/db_xref="CDD:238044"
misc_feature complement(351141..351146)
/gene="fixK"
/locus_tag="SMa0662"
/note="putative switch regulator; other site"
/db_xref="CDD:238044"
misc_feature complement(order(351042..351044,351069..351077,
351081..351083))
/gene="fixK"
/locus_tag="SMa0662"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:238044"
misc_feature complement(351024..351044)
/gene="fixK"
/locus_tag="SMa0662"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238044"
misc_feature complement(order(351024..351026,351036..351041))
/gene="fixK"
/locus_tag="SMa0662"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238044"
misc_feature complement(351036..351041)
/gene="fixK"
/locus_tag="SMa0662"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:238044"
gene complement(351675..351944)
/locus_tag="SMa0663"
/db_xref="GeneID:1235169"
CDS complement(351675..351944)
/locus_tag="SMa0663"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435595.1"
/db_xref="GI:16262802"
/db_xref="GeneID:1235169"
/translation="MNGEPDWKHCMAAALRRFPARSLQIRELSMRDEDFRGMCEDFAA
AENALAAVDQLPLHIREERRAEFKGLIESLAAEIAIALGPADGSI"
gene 352085..353842
/locus_tag="SMa0664"
/db_xref="GeneID:1235170"
CDS 352085..353842
/locus_tag="SMa0664"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction match (e-10) to cya3 adenyl
cyclase (CAB38103) over final two thirds (400 bp) but does
not capture hits to the original adenyl cyclases used for
cya3 assignment"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435596.1"
/db_xref="GI:16262803"
/db_xref="GeneID:1235170"
/translation="MTIAGRGSVRAGSPTALPTNTEILVQLDRIRLSAEFDVPDRARK
FLAYIVGEAIAGRADRIKAYSIATEVFGRDSSFDAQTDPVVRIEAGRIRRALERYYFV
AGSNDPIVIKIPKGGYAPAFEKRGGAPYQLSSGQAANVQSRSMSLEQTALWVSVATVG
LLTCGLLANAFFGSAATTIESLTKPGGTRPNIPKLMVMPFEDLSQTPQSAMITRGLTD
EVISNIAKFKEIVVVAGPAAPNPHSAEREYPAFALEGRVRLDGDKLRLGIRLVQHSDG
SVVWANTYDEVLQPRKIIELQQNAAAAVASAIAQPYGIVFQANATHFMRSVPDDWQAY
ACTLAYYGYRGDLNPQTHASVQECLQHATTQFPDYATAWALLSLTYVDELRFRYRLNR
STTVSLSHAIEAAARAVELDPQNVRALQAEMLTLFFRGEVNAALTVGARAYAINPNDT
ELSGEYGFRLALSGQWRSGCDLVSKTVASNPGPVGYFEAALAVCCYIEHDYVAAERWA
RSADLHANPVYHVILLAILGKLGKMDLARAEREWLEINVPGFLENARNEVALRIHRPE
DQKHFIEGLRQAGVPIPGK"
misc_feature 352589..353026
/locus_tag="SMa0664"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5616"
/db_xref="CDD:227903"
misc_feature 353153..353428
/locus_tag="SMa0664"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(353159..353161,353168..353170,353213..353215,
353285..353287,353297..353299,353306..353308,
353351..353353,353387..353389,353399..353401,
353408..353410)
/locus_tag="SMa0664"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature order(353204..353209,353213..353218,353225..353230,
353342..353347,353354..353359,353366..353371)
/locus_tag="SMa0664"
/note="binding surface"
/db_xref="CDD:238112"
gene complement(353876..355030)
/locus_tag="SMa0665"
/db_xref="GeneID:1235171"
CDS complement(353876..355030)
/locus_tag="SMa0665"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction match (e-26) to E. coli
hypothetical membrane protein over 75% 0f length"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435597.2"
/db_xref="GI:193782592"
/db_xref="GeneID:1235171"
/translation="MDDNPSSQRNPDPVNPAARPSIEPRITEIARIGLVGLFAYWSFT
LIAPFAIILIWAAILAVALYPAYAALSAILGQRPRVAALVITMLGLLVIVAPLAAIAF
SFAEGLQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWSMASDNLEAVLQQIKPA
LLQAGSKALGKIASIGADLLSFVVSVLVAGFLFGSGARLANSAQGFASRMGGDRGVGF
LQLAAATIRNVARGVIGVALLQAFLCILILSLFKVPAPGAIAFVVLILCIIQIGPALA
LLPVIVWAWTSMEFGMAALFTILLIPLLIIDNVMKPILVARGLSTPTLVILLGVLGGT
LSYGLIGLFLGPIVLSVFHSLLLIWMNTDTVGSEGLRLGNPDYRIRREKT"
misc_feature complement(353948..>354646)
/locus_tag="SMa0665"
/note="Predicted permease, member of the PurR regulon
[General function prediction only]; Region: yhhT; cl00465"
/db_xref="CDD:241882"
gene 355528..356016
/locus_tag="SMa0667"
/db_xref="GeneID:1235172"
CDS 355528..356016
/locus_tag="SMa0667"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435598.1"
/db_xref="GI:16262805"
/db_xref="GeneID:1235172"
/translation="MEDSLHPAAVAHLPPFITAPGQTDVLFNVMIVFVLLMVFVVGIL
YLRLHALPEHMAHGASKVQLQIVGVLALIALFTHNHLFWIAALLLAMVEFPNFSSPVE
SIARSLAKMADRHDGTDEPGTSAQPAAMPPRANESHASPPQWVPLEIEPVAGDNKAER
RG"
gene 356020..357249
/locus_tag="SMa0669"
/db_xref="GeneID:1235173"
CDS 356020..357249
/locus_tag="SMa0669"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction. match (e-10 to e-14) to three
hypothetical E. coli proteins over 70% of sequence. ProDom
match (aa62-aa232) to multidrug carrier transmembrane
family"
/codon_start=1
/transl_table=11
/product="hemolysin D"
/protein_id="NP_435599.1"
/db_xref="GI:16262806"
/db_xref="GeneID:1235173"
/translation="MLEFLICSLLTIFPDYLVRRYVQGKRVGREINLYSMWFELRYGI
TACLILTISLITMIFYFHPSTSNVTAVFRTVTIMPESTGRVAEVYVDLNEKVSAGAPL
FRLDDSEQRAALETARRRVAEIEAEAIVAQSELASADGLIAQAEGDYLQALNELETQV
ELNQRNPNIVARREIERLQVAVDGRDGARAASISNKRTLETKIASLLPAQKASAEAAL
TQAQVELDKTIVRAGTAGVVQQFALRAGDIVNPMIRSAGILVPEQRRIGLIAGFGQIE
AQVMKAGMIAEATCIGKPFTIIPMVVTEVQDVIAAGQIRPTDQLVDAQQLASPGTLTA
YLEPLYEGQFSGVPPGSSCIANAYTSNHDALHAPGISTPHWLFLHVVDAVGLVHAMIL
RLQALLLPVQTLVFKGH"
misc_feature 356092..357141
/locus_tag="SMa0669"
/note="Multidrug resistance efflux pump [Defense
mechanisms]; Region: EmrA; COG1566"
/db_xref="CDD:224482"
misc_feature 356236..356364
/locus_tag="SMa0669"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
gene 357359..358213
/locus_tag="SMa0670"
/db_xref="GeneID:1235174"
CDS 357359..358213
/locus_tag="SMa0670"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction match (e-76) to predicted
regulatory proteins from several sources ProDom finds
domain (e-74) but doesn't call function (8/2000)"
/codon_start=1
/transl_table=11
/product="regulatory protein"
/protein_id="NP_435600.1"
/db_xref="GI:16262807"
/db_xref="GeneID:1235174"
/translation="MDKHTDDRKKNNHWKAEDRKSAATEASETRSGGNYAKELARLQE
EIAHLQAWVKKTGARIVIVFEGRDAAGKGGVIKRITERVSPRVFRVVALPAPTDREKT
QIYMQRYIQQFPAAGEVVIFDRSWYNRPGVERVMGFCSEKKAKRFLEIAPRFEAAMIE
SGIVLLKYFLDVSEEEQDRRFRQRINDPLRQWKLSPMDVESYRRWWDYTRAYDEMIRM
TDTDDAPWWIVPSDNKKQARVNCIAHILSSIPYERVKFEDPDLGKRQKRPADFEGDTR
RRTVPNLF"
misc_feature 357449..358129
/locus_tag="SMa0670"
/note="polyphosphate kinase 2, PA0141 family; Region:
PPK2_P_aer; TIGR03707"
/db_xref="CDD:213852"
repeat_region 358752..360049
/standard_name="ISRm3"
/note="SMa3006; predicted by homology"
/rpt_family="ISRm3"
gene 358810..360012
/locus_tag="SMa0673"
/db_xref="GeneID:1235175"
CDS 358810..360012
/locus_tag="SMa0673"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="TRm3 transposase"
/protein_id="NP_435601.1"
/db_xref="GI:16262808"
/db_xref="GeneID:1235175"
/translation="MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELD
DHLDVERLEGGPANRRNGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPDF
DDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYP
LVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLWIEQTEGAKFWLRVMNELK
NRGCQDILIAVVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPAL
RAIYRARDAEAGLKALEAFEEGYWGQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYT
TNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAV
IFGERFFN"
misc_feature 358816..359946
/locus_tag="SMa0673"
/note="Transposase, Mutator family; Region:
Transposase_mut; pfam00872"
/db_xref="CDD:216166"
misc_feature 359341..359583
/locus_tag="SMa0673"
/note="MULE transposase domain; Region: MULE; pfam10551"
/db_xref="CDD:220806"
gene complement(360005..360349)
/locus_tag="SMa0674"
/db_xref="GeneID:1235176"
CDS complement(360005..360349)
/locus_tag="SMa0674"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435602.1"
/db_xref="GI:16262809"
/db_xref="GeneID:1235176"
/translation="MSEKVPGNGGSKHLFYGVLNPVDRSNEVLFGLIMVMTFTNSLST
TDAGRADVRSMLVGAVGCNLAWGIIDAVMYFMSSMAERKLSERTVHRVRTADDVKAGT
VRNSVRWAGFIS"
gene complement(360346..361491)
/locus_tag="SMa0675"
/db_xref="GeneID:1235177"
CDS complement(360346..361491)
/locus_tag="SMa0675"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction. ProDom aa47-390 Family
#PD005505 PROTEIN EXCHANGER AFFINITY CALCIUM 6e-38
Matches to diverse organisms including bacterial, yeasts
and plants over entire protein. Manganese resistance"
/codon_start=1
/transl_table=11
/product="Ca2+/H+ antiporter"
/protein_id="NP_435603.2"
/db_xref="GI:193782593"
/db_xref="GeneID:1235177"
/translation="MRTFEVKGSTKQSRSAIETVLRELRRSPLLALIFFVPVVILLER
MAPKAHTLLFFVAIAAIVPLAALLSRATESVAAKTGDAVGGLLNATLGNLTELIITLA
ALQAGQYLLVKASIAGAIVTNSLFMFGGAFLIGGLKHHLQEFNRVNARFQAILLFLAT
IAILVPSLTSGLDRTPAAEFSQQLSLGLAILLIVVYGLGMVFSLKTHKELFASVGQAE
AGEEPWPLSIGIVVLIVVTLLVAMVSEIFVGSVQAAAQHLGLTPAFVGFIVIALVGGA
AEMTTAFSAARANRLDLSVGIALGSAAQIALFVAPVLVLVSYFIGPQPMSLEFWPGAV
AMMLVATMAATLLSNGGHAAWYAGVMALAVYAIFALTLFLLPPGVTQ"
misc_feature complement(360364..361449)
/locus_tag="SMa0675"
/note="Ca2+/H+ antiporter [Inorganic ion transport and
metabolism]; Region: ChaA; COG0387"
/db_xref="CDD:223464"
misc_feature complement(360376..360771)
/locus_tag="SMa0675"
/note="Sodium/calcium exchanger protein; Region: Na_Ca_ex;
pfam01699"
/db_xref="CDD:216653"
gene complement(361696..362637)
/locus_tag="SMa0677"
/db_xref="GeneID:1235178"
CDS complement(361696..362637)
/locus_tag="SMa0677"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction Met12 has good SD sequence match
(e-16) to ABC glutamate/aspartate transporter protein"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435604.2"
/db_xref="GI:193782594"
/db_xref="GeneID:1235178"
/translation="MQAAPGKGRQSGRRIVRFGLTLGAVTVSMWASAEAQTLDRIRSS
STVKLGYDATARPFSFKAEGESATGYAVSLCMEVVEELKRELGIADLAVEWIELTREA
ADHAIRQGSADLFCGASPVTLTRRKEVSFSIAIFPSGTGAVLNASAPLALREVLTQGR
PSDRPIWRGSPARTVLNQKTFSPIAGTTSEDWLAERIKTFQLSATIAAVENYDQGIAN
ILNGESDVLFGDLPLLLDAAARGENSGDLIVLKRHFTYEPLALVLARNDEDFRIVVDR
ALSRTYRSEDFPAFFSEWFGPPDDTIVTFFRQTTLPE"
misc_feature complement(361717..362601)
/locus_tag="SMa0677"
/note="ABC-type amino acid transport/signal transduction
systems, periplasmic component/domain [Amino acid
transport and metabolism / Signal transduction
mechanisms]; Region: HisJ; COG0834"
/db_xref="CDD:223904"
misc_feature complement(361753..362499)
/locus_tag="SMa0677"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature complement(order(361948..361950,362074..362076,
362263..362265,362338..362340,362473..362475))
/locus_tag="SMa0677"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature complement(order(361969..361971,361987..361989,
361999..362001))
/locus_tag="SMa0677"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature complement(361852..361869)
/locus_tag="SMa0677"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene complement(362667..364025)
/gene="potE"
/locus_tag="SMa0678"
/db_xref="GeneID:1235179"
CDS complement(362667..364025)
/gene="potE"
/locus_tag="SMa0678"
/function="Cell processes; Transport of small molecules"
/note="catalyzes the uptake of putrescine via a proton
symport mechanism, as well as the efflux of putrescine by
a putrescine/ornithine antiport system"
/codon_start=1
/transl_table=11
/product="putrescine transporter"
/protein_id="NP_435605.1"
/db_xref="GI:16262812"
/db_xref="GeneID:1235179"
/translation="MTEHSLNVAMEAASKKKMNLVQLTFIVAVNMMGSGIIMLPANMA
QVGAISLLSWLVTAVGSMAIAYGFAQAGLFNQRPGGMSAYAEDAYGKPGYFLVFLLYF
LSLAVGNVAIGISAVGYLAGFFPWLTSTPIATCVSLIILLWLTTVANFGGPRVTGRIG
SITVWGVILPVGLLCIIGWAWFSSEVFAAAWNPNGLTLVQGMGSSISLTLWAFLGMES
AAQNSDAVENPKRDVPLACLFGTLGAAIIYILSTTVIQGIVPNAELAASTGPFALAFA
TMFNPAIGSVVMALAVLACVGSLLGWQFTIAQTARAAADERMFPSLFSRVNEMGAPVT
GMIVMGVVQSLLALMTISPTLNEQFAALVNLAVVTNVLPYIISLSALFVMMRAAGVSE
SKFRLNSSIAIVGMLYSVFAIYASGKDAVLGGMLVTGIAFIIYGLIAPRFTPRPGIVR
TA"
misc_feature complement(362685..363995)
/gene="potE"
/locus_tag="SMa0678"
/note="putrescine transporter; Provisional; Region: potE;
PRK10655"
/db_xref="CDD:182622"
misc_feature complement(<363123..363956)
/gene="potE"
/locus_tag="SMa0678"
/note="Tryptophan/tyrosine permease family; Region:
Trp_Tyr_perm; cl17316"
/db_xref="CDD:247870"
gene complement(364053..366401)
/locus_tag="SMa0680"
/db_xref="GeneID:1235180"
CDS complement(364053..366401)
/locus_tag="SMa0680"
/EC_number="4.1.1.17"
/EC_number="4.1.1.19"
/function="Small molecule metabolism; Degradation"
/note="glimmer prediction, start codon changed based on
homology"
/codon_start=1
/transl_table=11
/product="amino acid (ornithine, lysine, arginine)
decarboxylase"
/protein_id="NP_435606.1"
/db_xref="GI:16262813"
/db_xref="GeneID:1235180"
/translation="MKAPTVPIPFHKLLKVVAFVDESNLETKRLLAHIVAENFEVELR
GSYNADVSEDASVGAYIGTVEGGRLEDARKFVRAVRDIGFRTPLWALADSHGIADIAA
IKMAGEVDGFVYLGQQTPAFYAKQIISSLVNYGKTLLPPFFGGLMAYDGEANIAFDCP
GHQGGQFYRKSPAGQLFFNYFGESIFRADLCNADVDLGDLLIHEGPAAEAQKNAARIF
GADRTYFILNGTSTSNKVVTNAVLRAGDLVLFDRNNHKSLHQGALVQAGAIPVYLPTS
RNSFGMIGAVDWDAWDEASLRRQIERHPLVEDKARASAERPFRLACIQLATYDGTIYN
VRKVLEQIGHLCDYVLWDEAWIGYNAFHPLFEDHSPMRIDTLDAEMPGLFSTQSVHKQ
GAGFSQASQIHKRDEHIRDQRRYVEHKRFNESLLMHVSTSPFYPLFASLDVNAKIHEG
KAGEMLWDRCIELGIEARKKLREFTRYYESSGAGPQEQWFFDPFVPDVVTISGSKHTE
DVVESRWEALPTEVIKREQQCWRFRPGASWHGYSGYSDGYAMVDPNKLTLLTPGIDRA
TGEYRDFGIPATMVANYLREQRIVPEKCDLNSILFLLTPAEDESKLNTLIAKLVKFKN
LWDRDAPLAEVLPTVFAANRERYAGYTLRQVCAEMHDFYRQAGVKELQRLCFRAESMP
EPAMTPKAAYEALVANEVDYVALDEAFGRISATLALIYPPGIGVIVPGERWDERARPM
HNYFLAFQESFNRFPGFNYEVQGVFQERVDGQIKFYTYAVRE"
misc_feature complement(366000..366335)
/locus_tag="SMa0680"
/note="Orn/Lys/Arg decarboxylase, N-terminal domain;
Region: OKR_DC_1_N; pfam03709"
/db_xref="CDD:146376"
misc_feature complement(364056..366233)
/locus_tag="SMa0680"
/note="ornithine decarboxylase; Provisional; Region:
PRK13578"
/db_xref="CDD:184159"
misc_feature complement(364569..365984)
/locus_tag="SMa0680"
/note="Orn/Lys/Arg decarboxylase, major domain; Region:
OKR_DC_1; pfam01276"
/db_xref="CDD:201705"
misc_feature complement(order(365229..365231,365238..365240,
365337..365339,365346..365348,365430..365432,
365700..365702,365709..365714))
/locus_tag="SMa0680"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature complement(365229..365231)
/locus_tag="SMa0680"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
misc_feature complement(364089..364496)
/locus_tag="SMa0680"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene complement(366403..368673)
/locus_tag="SMa0682"
/db_xref="GeneID:1235181"
CDS complement(366403..368673)
/locus_tag="SMa0682"
/EC_number="4.1.1.17"
/EC_number="4.1.1.19"
/function="Small molecule metabolism; Degradation"
/note="glimmer prediction Excellent match (e-147) to
various basic amino acid decarboxylases (lysine, arginine,
ornithine) over entire length. May be in operon with
adjacent genes"
/codon_start=1
/transl_table=11
/product="decarboxylase (lysine, ornithine, arginine)"
/protein_id="NP_435607.4"
/db_xref="GI:193782595"
/db_xref="GeneID:1235181"
/translation="MEFYKAFPIAVIDEDYEGKSAAGRGMRSLAEAIEKEGYRVVAGL
TYEDARRLVNVFNTESCWLISVDGTESSTTRWEILAELLAAKRSRNNLLPIFLFGDDT
TAEMVPAPVLRHANAFMRLFEDSPEFMARAIVRAAQNYLERLPPPMFKALMEYTLHGA
YSWHTPGHGGGVAFRKSPVGQLFYTFFGENTLRSDISVSVGSVGSLLDHVGPIGEGER
NAARIFGADETLFVVGGTSTANKIVWQGMVTRNDLVLCDRNCHKSILHSLIMTGATPI
YLTPSRNGLGIIGPIAKEQFTPEAIAHKIVASPFASETNGKVRLMVVTNSTYDGLCYN
VDGIKSALGDAVEVLHFDEAWFAYANFHEFYDGYHAISSTKPARSQEAITFATQSTHK
LLAAFSQASMLHVQHAVAKQLDITRFNEAFMMHTSTSPQYGIIASCDVAAAMMEQPAG
RALVQETIDEAMSFRRAVNAVRTQMQDSWWFEVWEPPIADRAPSDATSDWLLKPGDAW
HGFEDLAENHVMVDPIKVTILSPGLNAGGAMLEHGIPAAVVTKFLSSRRIEIEKTGLY
SFLVLFSMGITRGKWSTLITELLNFKDLYDANAPLSRALPALAAAHPDVYRAMGLRDL
CEKIHDVYRSDGVPNAQREMYTVLPEMALRPADAYNRLVKGCVESVDIDELIGRTLAV
MIVPYPPGIPLIMPGERITAATRSIQDYLVYARSFDRKFPGFETDIHGLRFVANPSGR
RYLVDCIVEEGQDDTA"
misc_feature complement(368254..368613)
/locus_tag="SMa0682"
/note="Orn/Lys/Arg decarboxylase, N-terminal domain;
Region: OKR_DC_1_N; pfam03709"
/db_xref="CDD:217683"
misc_feature complement(366427..368265)
/locus_tag="SMa0682"
/note="Arginine/lysine/ornithine decarboxylases [Amino
acid transport and metabolism]; Region: LdcC; COG1982"
/db_xref="CDD:224893"
misc_feature complement(367267..368235)
/locus_tag="SMa0682"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:241782"
misc_feature complement(order(367498..367500,367507..367509,
367609..367611,367618..367620,367702..367704,
367954..367956,367963..367968))
/locus_tag="SMa0682"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature complement(367498..367500)
/locus_tag="SMa0682"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
misc_feature complement(366457..366834)
/locus_tag="SMa0682"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene complement(368879..369805)
/locus_tag="SMa0683"
/db_xref="GeneID:1235182"
CDS complement(368879..369805)
/locus_tag="SMa0683"
/function="Miscellaneous; Unknown"
/note="glimmer prediction ProDom match (e=0.003) to zinc
transport family"
/codon_start=1
/transl_table=11
/product="Cation efflux protein"
/protein_id="NP_435608.2"
/db_xref="GI:193782596"
/db_xref="GeneID:1235182"
/translation="MCNEQTFLRASIAATVVVAAFGIILGLLSGSFSITFDGVYSLAD
AGMTVLALWVSRLIAVSATGDALSARMRDRFTMGFWHLEPIVLLLNGTLLMAIAVYAL
INALTSVLKGGHQLQFGFAIAYAAVTVFVCAMMAVIGARANRGLRSNFIALDVKAWIM
SGGIASALLVAFIIGHAVQETALHWMTLYVDPVVLAFVCIVIIPLPIGTVKSALADIL
LITPNELRARVERIADETVRKQGFLSYRAYVARVGRAKQIELHFIVPSNFPPQPVESW
DQIRDEIGIAIGDEGHNRWLTVAFTADERWAE"
misc_feature complement(368882..369805)
/locus_tag="SMa0683"
/note="Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism]; Region: COG3965"
/db_xref="CDD:226474"
gene complement(369951..371276)
/locus_tag="SMa0684"
/db_xref="GeneID:1235183"
CDS complement(369951..371276)
/locus_tag="SMa0684"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction matches (e-53) ABC transport
family that includes putrescine/ornithine antiport,
lysine/cadaverine transport"
/codon_start=1
/transl_table=11
/product="transport protein"
/protein_id="NP_435609.1"
/db_xref="GI:16262816"
/db_xref="GeneID:1235183"
/translation="MSAPSSGKSLGLAACTAIVVGNMVGSGFYLSPAAVAPYGNLAIV
IWIVMGAGAICLGLTFARLAKLSPAVGGPYAYTRLAYGDFPGFLIAWGYWISIWASLP
VIAVAFAGVVIDFFPFLRGRGTATLLTLSVIWLVVLVNLRGVHAAGLFSEITTYAKMI
PFGAVALLGLFYIDFSHFADFNPSGQPLLQASAALAPLTMFAYLGLESATVPAGDVRD
AERTIPRSTVLGIAIAVTLYVLGTIVVMGLVPREELVHSVAPFSEAARRMWGPAGELA
ISLAVVLSSIGALNGWTLLMGQVPMAAARDGLFPPLFSRLSARHVPATGIVVSATLAT
ILVLVQAAGSEGFSSIYRLFVGLSTMTAVIPYAFCALASSLVSARVSGGTLIPRVTLI
ELVGFTFAIFTLYGCGAEPVLYGLVLLLLSIPVYIWQRRRSFVPGDFGQ"
misc_feature complement(370047..371276)
/locus_tag="SMa0684"
/note="arginine:agmatin antiporter; Provisional; Region:
PRK10644"
/db_xref="CDD:182613"
gene complement(371790..372296)
/locus_tag="SMa0687"
/db_xref="GeneID:1235184"
CDS complement(371790..372296)
/locus_tag="SMa0687"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435610.2"
/db_xref="GI:193782597"
/db_xref="GeneID:1235184"
/translation="MNVTSKTRIVAATAVSLLCSGTMVQAQDMKKYGTAAGWDIVVRG
DMGPGCLIAKKLGNDMQIQMGIDETTGRRGYMALYTKLAANVGSGEKRAVIFDVDGQK
FSGEATGQQLEGFDGAYVWVNNPDFIYDLAKMKTLTITPDGRKPFALSLAGTDAAMQA
MRACQEAN"
gene complement(372485..373435)
/locus_tag="SMa0689"
/db_xref="GeneID:1235185"
CDS complement(372485..373435)
/locus_tag="SMa0689"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435611.1"
/db_xref="GI:16262818"
/db_xref="GeneID:1235185"
/translation="MIKLLHTLLVGSAASLAPLLGAIDAALAQAEGPASVYDYAAAEE
PPVFDDPAKAVEAFKSVLAANDFDDLARLLGLNAAKLKAGEGSMETFGLIREGAARNI
VVRDLDGRKIIVIGDRLWPLPFPIVKDEAGKWAFDTYVGLEEIVNRRVGENELEAIET
ARAYVEAQRDYVSQDRDADGVLEYAQKLISSPGQTDGLYWPSDQGDGESPVGDAISEA
ALEKARTGEGYFGYRFRILTSQGDNIAGGKYDYTINGNMIAGFALVSWPVAYAETGVK
TFVINQQGIVYERDLGPSTEEIVPFIDRFDPDEKWSVVTD"
misc_feature complement(372494..373303)
/locus_tag="SMa0689"
/note="Protein of unknown function (DUF2950); Region:
DUF2950; pfam11453"
/db_xref="CDD:151892"
gene complement(373456..374856)
/locus_tag="SMa0690"
/db_xref="GeneID:1235186"
CDS complement(373456..374856)
/locus_tag="SMa0690"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction amino terminus match (e-13) to
amino terminal domain of larger predicted membrane protein
of E. coli"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435612.1"
/db_xref="GI:16262819"
/db_xref="GeneID:1235186"
/translation="MMRGMTLALAGAMTLMLSMQVNGSLAQEPTKAATGTVASTPEPL
TDDELEVLVARIALYPDELVALISAVSLYPLQIVEAERFLENHKKKPDLKPKESWDGS
VISLLNYPDVVKMMSDDLEWTQALGQAVAYQQKDVLIAIQQLRDEAVAKDIIKSDDKM
TVVQEGDNIIIQSANPETIYVPQYPPEMLYEPDYAPVPIDYYDTPYPSYYYPGAAFFA
GAVTGAVFGAIVDWDDWGVWGGDWGGDIDVDCDNCFNNVDIDGKVKWNDIDWKNVDRS
KLKFDRDQLQKLDRTNLKNNIKANGDNNIRNRATEINRDRLKSGPGGGASQLKDVRKS
TLEGLKAQPRRDAAARPTAKPGGGQAVAKAKSSGAKAGVNRPKGKKSSANRPAGKKKM
ASKAQNRPKKPSGLGNVNSGRREVSASRRGGHSMGGGQRGGGRPQMSRGGGRPPMGGG
GRGGGRGGGGRGGGRR"
misc_feature complement(<374269..374727)
/locus_tag="SMa0690"
/note="Protein of unknown function (DUF3300); Region:
DUF3300; pfam11737"
/db_xref="CDD:221195"
gene 375708..376937
/gene="arcA1"
/locus_tag="SMa0693"
/db_xref="GeneID:1235187"
CDS 375708..376937
/gene="arcA1"
/locus_tag="SMa0693"
/EC_number="3.5.3.6"
/function="Small molecule metabolism; Degradation; amino
acids"
/note="catalyzes the degradation of arginine to citruline
and ammonia"
/codon_start=1
/transl_table=11
/product="arginine deiminase"
/protein_id="NP_435613.1"
/db_xref="GI:16262820"
/db_xref="GeneID:1235187"
/translation="MRTVGVHSEVGKLRTVMVCRPSLAHQRLTPGNCHDLLFDDVIWV
HEAQKDHYDFVLKMEERGVEVLELHDLLSDTLIDAEARKFVLDRRVAPNVMGSQIAEL
MRPWMEEMDSRRLAAFLIGGISIADLPEGQGKALMASAFHSTQFVLPPIPNTLFQRDP
SCWIYNGVTCNPMFWPARRAETLIQRAVYKFHPSFKGAAFDIWWGDSDEQFANATMEG
GDVMPIGDGILLVGMGERTTYQAVGQVAKALFKAGAATRVIGCLMPKSRAAMHLDTVF
TFCDRDVVTLFADVVDQIRCYSLFPLDDEGNFEVRQEDRPMLEVVAEALGVDKLRTIA
TGGNTYEAEREQWDDGNNVVALEPGVVVAYDRNTYTNTLLRKAGIEVITIRGSELGRG
RGGGHCMTCPIWREPTD"
misc_feature 375708..376928
/gene="arcA1"
/locus_tag="SMa0693"
/note="arginine deiminase; Provisional; Region: PRK01388"
/db_xref="CDD:179290"
gene 376973..377977
/gene="arcB"
/locus_tag="SMa0695"
/db_xref="GeneID:1235188"
CDS 376973..377977
/gene="arcB"
/locus_tag="SMa0695"
/EC_number="2.1.3.3"
/function="Small molecule metabolism; Degradation; amino
acids"
/note="catalyzes the formation of ornithine and
carbamylphosphate from citrulline in the arginine
catabolic pathway"
/codon_start=1
/transl_table=11
/product="ornithine carbamoyltransferase"
/protein_id="NP_435614.1"
/db_xref="GI:16262821"
/db_xref="GeneID:1235188"
/translation="MSFNLRNRSLLTVQDYTPREFRYLVDLARDLKRAKYARTEQEHL
KGKEICLIFEKTSTRTRCAFEVACSDQGANVTYLDPAGSQIGHKESFKDTARVLGRMY
DAIEYRGASQAGVETLAKYAGVPVYNGLTDEYHPTQMIADVMTMREHSDKPISEIKYA
YIGDTRSNMGHSLLIVGCLMGMDVRICGPRSLWPSEEYQTIAKRLKAQSGARLMITDN
PREAVEGVDFIHTDVWVSMGEPKEVWKERIQLLTPYQVNAELMAASGNPQTKFMHCLP
AYHDTETTIGKQISDDYGMSDGLEVTDEVFESQANIAFEQAENRMHTIKALLVATLGD
"
misc_feature 376973..377974
/gene="arcB"
/locus_tag="SMa0695"
/note="ornithine carbamoyltransferase; Validated; Region:
PRK02102"
/db_xref="CDD:179366"
misc_feature 376994..377419
/gene="arcB"
/locus_tag="SMa0695"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:217204"
misc_feature 377441..377965
/gene="arcB"
/locus_tag="SMa0695"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:215776"
gene 377980..378954
/gene="arcC"
/locus_tag="SMa0697"
/db_xref="GeneID:1235189"
CDS 377980..378954
/gene="arcC"
/locus_tag="SMa0697"
/EC_number="2.7.2.2"
/function="Small molecule metabolism; Nucleotide
biosynthesis; pyrimidine ribonucleotide biosynthesis"
/note="reversible synthesis of carbamate and ATP from
carbamoyl phosphate and ADP"
/codon_start=1
/transl_table=11
/product="carbamate kinase"
/protein_id="NP_435615.1"
/db_xref="GI:16262822"
/db_xref="GeneID:1235189"
/translation="MRVVIALGGNALLKRGEPMTAEVQRQNIKIAAEAIAPIAAEHQI
VVTHGNGPQVGLLALQGSAYKPEEAYPLDILGAETEGMIGYMLEQELGNVLPFEVPLA
TILTMVEVDGNDPGFQNPTKFVGPVYDASEAGELHQQKGWVFKQDGNKWRRVVASPIP
RRIFELRPIQWLLDKGAVVICAGGGGIPTMYERGKERTLIGVEAVIDKDLCSALLARD
IEADLLILATDAEAVFTGWGTPERKAIFKTNPRRLGEFSFPAGSMGPKVEAACHFVNA
TGRVAAIGALADIPAMVRAERGTIISSSFSDITWHVEVPIPGPASRPV"
misc_feature 377980..378885
/gene="arcC"
/locus_tag="SMa0697"
/note="carbamate kinase-like carbamoyl phosphate
synthetase; Reviewed; Region: PRK12454"
/db_xref="CDD:183535"
misc_feature 377983..378885
/gene="arcC"
/locus_tag="SMa0697"
/note="AAK_CK: Carbamate kinase (CK) catalyzes both the
ATP-phosphorylation of carbamate and carbamoyl phosphate
(CP) utilization with the production of ATP from ADP and
CP. Both CK (this CD) and nonhomologous CP synthetase
synthesize carbamoyl phosphate, an...; Region: AAK_CK;
cd04235"
/db_xref="CDD:239768"
misc_feature order(377995..377997,378001..378006,378124..378132,
378343..378345,378598..378606)
/gene="arcC"
/locus_tag="SMa0697"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:239768"
misc_feature order(378004..378006,378661..378666,378679..378681,
378688..378690,378751..378753,378763..378768,
378775..378777)
/gene="arcC"
/locus_tag="SMa0697"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:239768"
misc_feature order(378004..378006,378661..378666,378679..378681,
378688..378690,378751..378753,378763..378768,
378775..378777)
/gene="arcC"
/locus_tag="SMa0697"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:239768"
misc_feature order(378154..378156,378187..378189,378196..378201,
378208..378210,378220..378225,378232..378234,
378241..378246,378256..378258,378286..378294,
378298..378300,378472..378474,378481..378483,
378574..378576,378580..378582)
/gene="arcC"
/locus_tag="SMa0697"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239768"
gene 379173..379643
/locus_tag="SMa0699"
/db_xref="GeneID:1235190"
CDS 379173..379643
/locus_tag="SMa0699"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435616.1"
/db_xref="GI:16262823"
/db_xref="GeneID:1235190"
/translation="MAEKQHIDLEAAPASAKDLRMQLLQRQMEEMEKERQFKAVQEQK
LTDFAGVFLEEHVTPEEVAVVRRLVANAVRDGKFEAMVYSFPSNLCTDSGRAINSADR
DWPQTLQGKAKEFYERYQKFGKPQGFKLKAMIVNFPGGMPGDVGFFLNWAPDDA"
gene 380049..380483
/locus_tag="SMa0702"
/db_xref="GeneID:1235191"
CDS 380049..380483
/locus_tag="SMa0702"
/function="Miscellaneous; Unknown"
/note="glimmer prediction ProDom match (e=0.001) to
transmembrane ion channel family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435617.1"
/db_xref="GI:16262824"
/db_xref="GeneID:1235191"
/translation="MEAWVLFRLAIACGLIAATVAVQASFMSAGLGVFRRLEEDRRDF
LLRYPTVTTVIWIVYLIVPIALDVVLWATFYYLSRALPDFEDALYFSTVTFTTVGYGD
IVLGRDWRQVATFEAVNGWIIFGWATALMMAVIQRLHFRGND"
misc_feature 380238..380441
/locus_tag="SMa0702"
/note="Ion channel; Region: Ion_trans_2; pfam07885"
/db_xref="CDD:219619"
gene complement(380966..381907)
/gene="dgoK2"
/locus_tag="SMa0705"
/db_xref="GeneID:1235192"
CDS complement(380966..381907)
/gene="dgoK2"
/locus_tag="SMa0705"
/EC_number="2.7.1.58"
/function="Small molecule metabolism; Degradation"
/codon_start=1
/transl_table=11
/product="DgoK2 2-dehydro-3-deoxygalactonokinase"
/protein_id="NP_435618.2"
/db_xref="GI:193782598"
/db_xref="GeneID:1235192"
/translation="MSNSAFEPVTVVLDWGTTGFRAFLVRSDGSLVDQKEGERGIQSI
AKGEHGRVVSEALASWRAGYGPLDIVAAGMIGSRNGWIEMPYVPTPASAADVAAAART
EGLPEGNRITFLPGLTDPTGFPFPDVMRGEEAQLVGFGLDRDIIVVLPGTHAKWAEIR
GGHIERFRTFVTGEIYATLADHSFLSKVATAERDHAADAFAEGVALAQEESTRAGGLL
TRLFAVRTGWLAGAIAPDEMKSRLSGLIIGWEFVEARTGGWFKEGDTIAVVGDDDLVE
VYGRVAENFGVKLAPAPADAAIRGALTIWRRHRLAAK"
misc_feature complement(380969..381889)
/gene="dgoK2"
/locus_tag="SMa0705"
/note="2-keto-3-deoxy-galactonokinase [Carbohydrate
transport and metabolism]; Region: DgoK; COG3734"
/db_xref="CDD:226257"
misc_feature complement(381047..381868)
/gene="dgoK2"
/locus_tag="SMa0705"
/note="2-keto-3-deoxy-galactonokinase; Region: DGOK;
pfam05035"
/db_xref="CDD:218394"
gene 381959..382921
/locus_tag="SMa0707"
/db_xref="GeneID:1235193"
CDS 381959..382921
/locus_tag="SMa0707"
/function="Small molecule metabolism; Amino acid
biosynthesis"
/note="glimmer prediction match (e-8) to
dihydrodipicolinate synthases but family is large with
good hits in the range e-57 to proteins from near
relatives. match in amino half"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate synthase"
/protein_id="NP_435619.1"
/db_xref="GI:16262826"
/db_xref="GeneID:1235193"
/translation="MVHNIEIKSHNMDRLMRLTGILPVLPTPFTETGVDLDAMRRIVR
FALDAGVAGVVFPGFASEVEALTGEERQALLKVVATEVGDRVPIVAGASAPTVDEVVA
YGRQALGLGITRLMIQPPKSIGAGAGAVTAFLAAAAAQLPEVEIILQNAPAPRGSDLA
PEAVLEVVRRVAAVRYVKEETLPAGPAITAILANAPEHMLGVIGGGGARYILDEYDRG
ACAAMPALEIADLHAALDRSYRDGRGSEARALYVKSLPLLVLQAVYRMRLTKHVLGLR
GVLDNPIVRAPTPDLDALAVRDIERCFQECGLGSVGADKWRRTK"
misc_feature 382001..382867
/locus_tag="SMa0707"
/note="Dihydrodipicolinate synthase/N-acetylneuraminate
lyase [Amino acid transport and metabolism / Cell envelope
biogenesis, outer membrane]; Region: DapA; COG0329"
/db_xref="CDD:223406"
misc_feature 382019..382861
/locus_tag="SMa0707"
/note="Dihydrodipicolinate synthase family; Region:
DHDPS-like; cd00408"
/db_xref="CDD:188630"
misc_feature order(382028..382030,382121..382123,382130..382138,
382403..382405,382493..382495)
/locus_tag="SMa0707"
/note="inhibitor site; inhibition site"
/db_xref="CDD:188630"
misc_feature order(382121..382123,382130..382138,382403..382405,
382493..382495,382625..382627)
/locus_tag="SMa0707"
/note="active site"
/db_xref="CDD:188630"
misc_feature order(382133..382135,382148..382153,382244..382249,
382319..382324,382343..382345,382355..382357,
382814..382819)
/locus_tag="SMa0707"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188630"
misc_feature 382493..382495
/locus_tag="SMa0707"
/note="catalytic residue [active]"
/db_xref="CDD:188630"
gene 382918..384087
/locus_tag="SMa0708"
/db_xref="GeneID:1235194"
CDS 382918..384087
/locus_tag="SMa0708"
/note="glimmer prediction match (e-22) to isomerases,
ProDom e-14. DgoA galactonate dehydratase domain homology
in E.coli (P31458) but cannot trace assignment Trimmed to
met19 of glimmer prediction to get good SD sequence and
decrease overlap with SMA0707"
/codon_start=1
/transl_table=11
/product="enolase"
/protein_id="NP_435620.1"
/db_xref="GI:16262827"
/db_xref="GeneID:1235194"
/translation="MSDRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRT
VYPTFDRSVLVRIETENGAVGWGETYGLVAPRATMEIIDDLLADFTIGRDPFDAAAIH
DDLYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISG
LPEDTRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHW
AHTASEAVALIKAMEPHGLWFAEAPVRTEDIDGLARVAASVSTAIAVGEEWRTVHDMV
PRVARRALAIVQPEMGHKGITQFMRIGAYAHVHHIKVIPHATIGAGIFLAASLQASAA
LANVDCHEFQHSIFEPNRRLLVGDMDCLNGEYVVPTGPGLGVEPSKEAQGLLKKH"
misc_feature 383029..384048
/locus_tag="SMa0708"
/note="Mandelate racemase (MR)-like subfamily of the
enolase superfamily. Enzymes of this subgroup share three
conserved carboxylate ligands for the essential divalent
metal ion (usually Mg2+), two aspartates and a glutamate,
and conserved catalytic residues; Region: MR_like;
cd03316"
/db_xref="CDD:239432"
misc_feature 383056..384081
/locus_tag="SMa0708"
/note="L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope biogenesis,
outer membrane / General function prediction only];
Region: COG4948"
/db_xref="CDD:227284"
misc_feature order(383470..383472,383476..383478,383560..383562,
383638..383640,383716..383718,383785..383787,
383863..383865,383941..383943)
/locus_tag="SMa0708"
/note="active site pocket [active]"
/db_xref="CDD:239432"
gene 384120..385385
/locus_tag="SMa0709"
/db_xref="GeneID:1235195"
CDS 384120..385385
/locus_tag="SMa0709"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction moved to met41 of glimmer
prediction to align with match, decrease overlap with
SMA0707 and get good SD sequence"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435621.1"
/db_xref="GI:16262828"
/db_xref="GeneID:1235195"
/translation="MKTIGKYAVAATVTAMLACTASAVPASAEVLKFVSWQKDEKGIG
DWWGSVIKEWEAKHPGNTIEWTKVERSAYSDTMTTLFAGGTPPDIVHLASFEFQTFAN
NGWLEDLGPWVEKTGLDLDGWSGQDICKFQDTTVCIMMLYYGTIFGYNEEMLKQAGVD
VPTNYEEFLAAARATTKDLNGDGIVDQFGTGHETKGGGGQYIAEIASYLFDAGARFTS
AEGEVTIDTPEMVEGLTRWKTVVKENLTPRDLSAGEVRKLFADGKIALKVDGPWIYSI
MQQGAAKDKLKLASVPFDPPLGGSSNILAMPSEISEEKKQLVWDFIAIATSDKFQTSF
ATLAASTPPSPRADLTEAKAQIPHFHLMAQSQKAAAEHKIDRIPIGLEIQFNEFSKMI
QEEAQRMIIEDLDPAAVAKTMHEKAEALQ"
misc_feature 384120..385379
/locus_tag="SMa0709"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:224567"
misc_feature 384249..385112
/locus_tag="SMa0709"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:216563"
gene 385360..386373
/locus_tag="SMa0710"
/db_xref="GeneID:1235196"
CDS 385360..386373
/locus_tag="SMa0710"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction match (e-40) to ThuF, a
trehalose/maltose transport protein in S. meliloti"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435622.2"
/db_xref="GI:193782599"
/db_xref="GeneID:1235196"
/translation="MRRPRRFNRRLPPSAHKGKPGAPYVASGPRKKQEAIMSLRFLDL
ARPSRQHWLGYLLLLPAVALVALIIVYPLFVSLDLSFQKIGMATLSAPRKPFTLENYH
KLFASPDFWNSCWVTIKLVVVVSAACFAVGLGTALLVNNRFKGRTLARLFVALPWAVP
EVIAVVIFAWIFDSSFGLMNWLFIKLGITSQMINWFSEPTAAFWVVAITMIWKGYPFV
SIMTLAGLQSIPEDFYNAAKVDGANAFQRFWYITIPVLMPVLGVTSVLVVLWVFRDFS
IIKVLTDGGPLKATQTLSIMTYDQAFGFFNMGYASAIGIVTLVLCVVASLLMLGRKSQ
AMY"
misc_feature 385702..386325
/locus_tag="SMa0710"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(385747..385752,385759..385764,385774..385776,
385804..385815,385819..385848,385855..385860,
385864..385866,385990..385995,385999..386001,
386008..386010,386017..386022,386026..386028,
386038..386043,386050..386052,386101..386103,
386143..386148,386155..386157,386176..386187,
386194..386199,386242..386247,386275..386280,
386287..386292,386296..386301,386308..386313,
386320..386325)
/locus_tag="SMa0710"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(385822..385866,386176..386193)
/locus_tag="SMa0710"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(385864..385866,385975..385977,386194..386196,
386236..386238,386245..386247,386275..386277)
/locus_tag="SMa0710"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(386053..386091,386107..386112,386122..386124)
/locus_tag="SMa0710"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 386385..387215
/locus_tag="SMa0711"
/db_xref="GeneID:1235197"
CDS 386385..387215
/locus_tag="SMa0711"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction match (e-47) to several
transporter proteins over entire length"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435623.1"
/db_xref="GI:16262830"
/db_xref="GeneID:1235197"
/translation="MQRTTLQTLSLYAGLAVVCGVLLFPIYWLFVTALSTLAEIRQLP
PSFWPAEPQWSTFAKVGTERPIFLWLWNSTLAALGSVALSMVVSVFAGYSLSRFSVKG
GRSLGLFILTAKMLPATLLVIPLFGIFRSMGLIGSLWSLVLAHATLIIPFTTWMLKGY
FDTIPRELEQAAMVDGCSPLGALFRVVLPVATPGLAATALYAFVLSWADYAYARTFLT
NAQGSWTANLGITTMKGEYVTDWNEISAAAVFIALPIILIYLFLERYLVGGLTAGAEK
"
misc_feature 386391..387212
/locus_tag="SMa0711"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:223472"
misc_feature 386592..387152
/locus_tag="SMa0711"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(386640..386645,386652..386657,386670..386672,
386700..386711,386715..386744,386751..386756,
386760..386762,386823..386828,386832..386834,
386838..386840,386847..386852,386856..386858,
386868..386873,386880..386882,386931..386933,
386973..386978,386985..386987,387006..387017,
387027..387032,387069..387074,387102..387107,
387114..387119,387123..387128,387135..387140,
387147..387152)
/locus_tag="SMa0711"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(386718..386762,387006..387023)
/locus_tag="SMa0711"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(386760..386762,386808..386810,387027..387029,
387063..387065,387072..387074,387102..387104)
/locus_tag="SMa0711"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(386883..386921,386937..386942,386952..386954)
/locus_tag="SMa0711"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 387217..387810
/locus_tag="SMa0713"
/db_xref="GeneID:1235198"
CDS 387217..387810
/locus_tag="SMa0713"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction Homology abruptly stops at LPTS
(109920) sequence BUT alternate reading frame (ASNL>MTMA)
gives e-15 hits to same class of proteins as SMA0713. ABC
transport ATP binding protein hits (e-57) to amino
terminus of matches"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435624.1"
/db_xref="GI:16262831"
/db_xref="GeneID:1235198"
/translation="MAGISIQNVYKDYGALNVLKEFSLEIADGEFVVLVGPSGCGKST
MLKILAGLEPASGGKIMIGDRDVTDLAPGDRDIAMVFQNYALYPHLTVGQNMGFGLKM
RGMPKAEIDRRVRAAAKILAVDHLLDRRPKALSGGQRQRVALGRAIVREPRAFLMDEP
LPTSTPSCASIRAPRSARFTSASASRRSMSRTIRSRR"
misc_feature 387226..>387699
/locus_tag="SMa0713"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 387322..387345
/locus_tag="SMa0713"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(387331..387336,387340..387348,387460..387462,
387688..387693)
/locus_tag="SMa0713"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 387343..387696
/locus_tag="SMa0713"
/note="ABC transporter; Region: ABC_tran; pfam00005"
/db_xref="CDD:200922"
misc_feature 387451..387462
/locus_tag="SMa0713"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 387616..387645
/locus_tag="SMa0713"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 387676..387693
/locus_tag="SMa0713"
/note="Walker B; other site"
/db_xref="CDD:72971"
gene 387807..388304
/locus_tag="SMa0714"
/db_xref="GeneID:1235199"
CDS 387807..388304
/locus_tag="SMa0714"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction, Homology of SMA0713 abruptly
stops at LPTS (109920) sequence BUT alternate reading
frame (ASNL>MTMA) gives e-15 hits to same class of
proteins as SMA0713 and SMA0714. ABC transport ATP binding
protein hits (e-22) to carboxyl terminus of matches"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435625.1"
/db_xref="GI:16262832"
/db_xref="GeneID:1235199"
/translation="MTMADRVVIMRDGAIQQIADPDTLFAKPENLFVAGFIGSPGMNF
LRARIEAGKLTLFGQTFNAAVGVGAGEIIVGIRPEHLALGPGDVTFTVKPTLVESLGS
EKYVYFEPGEHAYRADARDEERGKGLIARIAHAGPIREGEELVLSFNASEVHLFDAKT
EKAVN"
misc_feature <387807..388283
/locus_tag="SMa0714"
/note="ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism]; Region: MalK;
COG3839"
/db_xref="CDD:33631"
misc_feature <387807..387920
/locus_tag="SMa0714"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 388035..388274
/locus_tag="SMa0714"
/note="TOBE domain; Region: TOBE_2; cl01440"
/db_xref="CDD:207413"
gene 388306..389286
/locus_tag="SMa0715"
/db_xref="GeneID:1235200"
CDS 388306..389286
/locus_tag="SMa0715"
/function="Small molecule metabolism; Degradation"
/note="glimmer prediction match (e-23) to several
UDP-glucose 4-epimerase over entire length"
/codon_start=1
/transl_table=11
/product="Nucleoside-diphosphate-sugar epimerase"
/protein_id="NP_435626.1"
/db_xref="GI:16262833"
/db_xref="GeneID:1235200"
/translation="MKVLVTGSAGRVGAFVVRRLIAGGHQVRGFDLRSAGIEDGGFDE
VIGAFDDREAAIRACEGTDAVLHLGAFMSWLASDRDKLFRANVEGTRIVLEAAAAAKV
GRFVFASSGEVYPENKPEFQPITEDHPKKPLSPYGLTKLLGEELVTFQGRVSSMETVI
LRFSHTQNASELLDPESFFSGPRFFLRPKIEQQENFGNKAAADLLRAADPGRPALVLT
RNEEGRPFRMHITDTRDMAQGVLLALTHQKAAGGIFNLGATEPVDFAQILPVMAQMTG
LPLLTVDLPGAGVWYHTSNQRIRETLGFEPDWPIMRMLDEAVAEWTIRQA"
misc_feature 388306..389283
/locus_tag="SMa0715"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:223528"
misc_feature 388309..389271
/locus_tag="SMa0715"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature order(388324..388326,388330..388335,388339..388341,
388396..388404,388507..388515,388627..388635,
388711..388713,388723..388725,388792..388800,
388834..388836)
/locus_tag="SMa0715"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(388561..388563,388633..388635,388711..388713,
388723..388725)
/locus_tag="SMa0715"
/note="active site"
/db_xref="CDD:187535"
gene 389265..390974
/locus_tag="SMa0717"
/db_xref="GeneID:1235201"
CDS 389265..390974
/locus_tag="SMa0717"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction carboxyl half match (e-42) to
calcium binding regulatory protein regucalcin from Xenopus
amino half match (e-18) to bacterial transcription
regulatory protein ProDom domain family #PD002768"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435627.1"
/db_xref="GI:16262834"
/db_xref="GeneID:1235201"
/translation="MDDKAGLGGLEDRGAPAGAAALAKGLALLDLIAEAPKPLRFADL
QKMSGVPKPTLARMLKTLMVFRLIRQDETTGAYLLGHRFVELSHRVWDKFDLVSAAIP
ELDRLASELGETVALCRLDGQRVVYLEERSSGGLGVLIEVGRRVPVHCTAAGKVLLAF
QEPSFARSLAGQITYDRFTPNTITDSQALEADLVLTRARGYAVSYEEHLAGVNSVAAP
IAGRDGVPLGALVVLGPASRLDSSAIHPAGRELMAAARRITGTVGAVAISSGPRPRTR
SGGFSDVQCVLPWGAQLGEAPVWVEREKRLYWVDILHPAVHRFDPVTGKNESCNVAKL
VSAVLPTRNEGLIVASQDGVEHFDFDRGDFNPFAEPEPGLPENRLNDAKVDPSGRLWV
GSMRLDVSRPTGSLYRLTSAGEVTRAGSGFTVANGLAWSPDSSTFYFVDTVPGIIYAY
DFDAREGSIANRRVFVTVPEAEGRPDGLAVDADGGVWCAIWDGWRVNRYRPDGRLDRA
VELPVPRPTSVAFGGDELATLFITSARTRLPASTLTEAPLSGGIFACNPGARGLPTSL
FGV"
misc_feature 389364..390056
/locus_tag="SMa0717"
/note="Transcriptional regulator [Transcription]; Region:
IclR; COG1414"
/db_xref="CDD:224332"
misc_feature 389364..389588
/locus_tag="SMa0717"
/note="IclR helix-turn-helix domain; Region: HTH_IclR;
cl17605"
/db_xref="CDD:248159"
misc_feature 389676..390047
/locus_tag="SMa0717"
/note="Bacterial transcriptional regulator; Region: IclR;
pfam01614"
/db_xref="CDD:201890"
misc_feature 390069..390965
/locus_tag="SMa0717"
/note="Gluconolactonase [Carbohydrate transport and
metabolism]; Region: COG3386"
/db_xref="CDD:225921"
gene 391032..391751
/locus_tag="SMa0719"
/db_xref="GeneID:1235202"
CDS 391032..391751
/locus_tag="SMa0719"
/note="glimmer prediction match (e-25) to full length of
proteins assigned as gluconate dehydrogenase,
3-oxoacyl-acyl carrier protein reductase,
3-ketoacyl-ACP/CoA reductase, acetoacetyl-CoA reductase,
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase, NodG-type
reductase"
/codon_start=1
/transl_table=11
/product="short-chain alcohol dehydrogenase"
/protein_id="NP_435628.1"
/db_xref="GI:16262835"
/db_xref="GeneID:1235202"
/translation="MTGSSRGIGASIAQAYAAYGARVVLHGQRPGATAEIEKAIRAAG
GDAVSIHRELSPPSAGRDLIAAAEGAAGPLDILVINASAQINGALHDVTPEDFATQID
VNLRSTVEMLQAALPAMAERGWGRVVNIGSINQLRPKSIVSIYAATKAAQHNLIQSLA
RDYASRGVLLNTLAPGLIDTDRNAARRDGDPEAWSNYVRTLNWIGRAGRPDEMVGAAL
FLASDACSFMTGEAVVLSGGF"
misc_feature 391035..391748
/locus_tag="SMa0719"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05557"
/db_xref="CDD:180126"
misc_feature 391035..391736
/locus_tag="SMa0719"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(391038..391040,391044..391055,391110..391118,
391185..391193,391269..391277,391338..391340,
391419..391427,391464..391466,391476..391478,
391554..391565,391569..391574)
/locus_tag="SMa0719"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(391341..391343,391425..391427,391464..391466,
391476..391478)
/locus_tag="SMa0719"
/note="active site"
/db_xref="CDD:212491"
gene 391850..392461
/locus_tag="SMa0722"
/db_xref="GeneID:1235203"
CDS 391850..392461
/locus_tag="SMa0722"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction match (e-4) to hypothetical
Agrobacterium tumefaciens protein"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_435629.1"
/db_xref="GI:16262836"
/db_xref="GeneID:1235203"
/translation="MRFDRWNTAFCDMDFQILSLSYRTHRVTAGTQEPRSNELRSRSV
EVISGEDRFRIDADAIRSASWMKRIAGIVGRADAQAPRPGRITFRVRNHGWTEESPLS
FMHERVGGWSYVIATDGQCVEMLEDDYQQLPIGLVGRHRRCRYDPASKNRLVAACLEP
FASAARLALEHRVNANLLCKRIKKRAEPASRPVLITGDYPSSV"
misc_feature 391991..392323
/locus_tag="SMa0722"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG2963"
/db_xref="CDD:32783"
misc_feature 392270..392443
/locus_tag="SMa0722"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 392499..393287
/locus_tag="SMa0723"
/db_xref="GeneID:1235204"
CDS 392499..393287
/locus_tag="SMa0723"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction carboxyl half match (e-3) to two
hypothetical proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435630.1"
/db_xref="GI:16262837"
/db_xref="GeneID:1235204"
/translation="MAAADLAGTCDGVRGSALEKSCAFSSPTTVSASLPNGVMLECGH
VDALMAVIGALGVHFALAMLTLGGGASRPKKKQLSVITGPLTVGASAAMLCRRKDSAK
LDVPSHYFTGELLVKPRISVLTLGVADLERSLAFYRDGLGLHTPGIVGREFEHGAVAF
FDLSNGVKLAIWDQDDLAHDSGLTKAPASSTSFSIGHNVSQRSEVDEVMEQAREAGAA
IVKPAQETFYGGYAGYFTDPDGHLWEIVWNPGNLAERTDLSPLP"
misc_feature 392853..393233
/locus_tag="SMa0723"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:216182"
misc_feature 392862..393242
/locus_tag="SMa0723"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_10; cd07251"
/db_xref="CDD:211351"
gene 393877..394269
/locus_tag="SMa0726"
/db_xref="GeneID:1235206"
CDS 393877..394269
/locus_tag="SMa0726"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435632.2"
/db_xref="GI:193782600"
/db_xref="GeneID:1235206"
/translation="MGSRARPYLPPDFTDSSVVPIGEDGKAIGFLTYDCGRESWDITL
SYVDPEHRRKHIHTALFNALRDKAKEQGNVVSITCVTHATRRKPHSWPEQQTVTNGHW
VRLSPRRLRLGHQAPEANRTHFMLGTSR"
misc_feature 393943..394092
/locus_tag="SMa0726"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(394009..394017,394045..394050)
/locus_tag="SMa0726"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 394691..394891
/locus_tag="SMa0728"
/db_xref="GeneID:1235207"
CDS 394691..394891
/locus_tag="SMa0728"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435633.1"
/db_xref="GI:16262840"
/db_xref="GeneID:1235207"
/translation="MQVKQWFGFVPDFIITLDAEYCRACGAPVFTIRGHNVEEFVGVV
RRYGANAAGVRAIVDAAPARQR"
gene 395232..395579
/locus_tag="SMa0731"
/db_xref="GeneID:1235208"
CDS 395232..395579
/locus_tag="SMa0731"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435634.1"
/db_xref="GI:16262841"
/db_xref="GeneID:1235208"
/translation="MAKAKLSDEVKTYIVQALACFDSPSVVAAAVKKEFGVDVSRQLV
QSHEPNKKAESGRAPPQNHAVPALARPIWRADDGAGRGRRAVPCCYAGNSIINWDRDF
FVMDESGKKARRV"
misc_feature 395238..395576
/locus_tag="SMa0731"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5556"
/db_xref="CDD:227843"
gene 395775..396098
/locus_tag="SMa0734"
/db_xref="GeneID:1235209"
CDS 395775..396098
/locus_tag="SMa0734"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435635.1"
/db_xref="GI:16262842"
/db_xref="GeneID:1235209"
/translation="MSGQETLVAINGEAPKTVGAGVVHQMMGSDPMTPDLKYVSSTCS
GTQKHEDAIEKQKEAAVMAGAGMFEQEKSTQESGEARRLRFARETANLMSVSQVSVLH
CSSVA"
misc_feature 395778..396050
/locus_tag="SMa0734"
/note="Domain of unknown function (DUF4055); Region:
DUF4055; pfam13264"
/db_xref="CDD:222015"
gene 396113..396385
/locus_tag="SMa0736"
/db_xref="GeneID:1235210"
CDS 396113..396385
/locus_tag="SMa0736"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435636.1"
/db_xref="GI:16262843"
/db_xref="GeneID:1235210"
/translation="MKGLDDADIVVAPPKDLLDSTMSAADFAQLFGVYTQGGMSWETF
YERGQADGIFRLSGTRKTNTPSSILRAQRTSGRQPSSDLEHSWPFV"
gene complement(396650..396853)
/gene="cspA6"
/locus_tag="SMa0738"
/db_xref="GeneID:1235211"
CDS complement(396650..396853)
/gene="cspA6"
/locus_tag="SMa0738"
/function="Cell processes; Adaptation"
/note="glimmer prediction match (e-16) to various cold
shock proteins, including ones from S. meliloti and NGR234
plasmid"
/codon_start=1
/transl_table=11
/product="CspA6 cold shock protein transcriptional
regulator"
/protein_id="NP_435637.1"
/db_xref="GI:16262844"
/db_xref="GeneID:1235211"
/translation="MATGTVKFFAQDKGFGFITPDNGGPDVFVHISALGFGGSLQDGQ
KVSYELGQDRKTGKSKAENVSIL"
misc_feature complement(396656..396847)
/gene="cspA6"
/locus_tag="SMa0738"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box...; Region:
CSP_CDS; cd04458"
/db_xref="CDD:239905"
misc_feature complement(order(396689..396691,396770..396772,
396803..396805,396830..396832))
/gene="cspA6"
/locus_tag="SMa0738"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:239905"
misc_feature complement(order(396764..396775,396794..396814))
/gene="cspA6"
/locus_tag="SMa0738"
/note="RNA-binding motif; other site"
/db_xref="CDD:239905"
gene complement(396954..397382)
/locus_tag="SMa0739"
/db_xref="GeneID:1235212"
CDS complement(396954..397382)
/locus_tag="SMa0739"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435638.1"
/db_xref="GI:16262845"
/db_xref="GeneID:1235212"
/translation="MTKTEDKTAEFREARVMRTLEDGVGTAIEVDLAVMHPRQRRTYA
GPEQYRGPVEVRGVQELAKELPNPADLCYLRCRDGVAVSGDRAIRYADALLRSRLSCG
GPPATATGGKQKARRYHFEPLKHVGASRHPNWEQAFEQNT"
gene 397665..398045
/locus_tag="SMa0740"
/db_xref="GeneID:1235213"
CDS 397665..398045
/locus_tag="SMa0740"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435639.1"
/db_xref="GI:16262846"
/db_xref="GeneID:1235213"
/translation="MFKSSGSHLAGKLEIAAPNVNARRPSCLLRTRIRAMAVPDPVQS
IAALDEPPIYFAAVGAKTDTDEPLISIALSDVAPDGRDAARIDQARLPRPFRTDRCRH
LRLSIFANFPAHLHRAAHTVACDF"
gene complement(398183..398623)
/locus_tag="SMa0742"
/db_xref="GeneID:1235214"
CDS complement(398183..398623)
/locus_tag="SMa0742"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435640.1"
/db_xref="GI:16262847"
/db_xref="GeneID:1235214"
/translation="MRGGRYAERDICSKSQGRSRAVKTLISHRGTKPAVTLVARSRVS
GRMESGPFDGRYKPPQALANTPQIVQLLRVICLRYIFEIVDDEGQSRAYVASHMYRKA
DKLIVLHRGAEVGIDICRICDWCAVDEDEAQRAGTAQTGWLHDC"
gene complement(399043..400680)
/gene="groEL"
/locus_tag="SMa0744"
/db_xref="GeneID:1235215"
CDS complement(399043..400680)
/gene="groEL"
/locus_tag="SMa0744"
/EC_number="1.3.1.-"
/function="Cell processes; Chaperoning"
/note="60 kDa chaperone family; promotes refolding of
misfolded polypeptides especially under stressful
conditions; forms two stacked rings of heptamers to form a
barrel-shaped 14mer; ends can be capped by GroES;
misfolded proteins enter the barrel where they are
refolded when GroES binds; many bacteria have multiple
copies of the groEL gene which are active under different
environmental conditions; the B.japonicum protein in this
cluster is expressed constitutively; in Rhodobacter,
Corynebacterium and Rhizobium this protein is not
essential for growth"
/codon_start=1
/transl_table=11
/product="molecular chaperone GroEL"
/protein_id="NP_435641.1"
/db_xref="GI:16262848"
/db_xref="GeneID:1235215"
/translation="MAAKEVKFGRSAREKMLRGVDILADAVKVTLGPKGRNVVIDKSF
GAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVRE
GAKAVAAGMNPMDLKRGIDLAVAEVVKDLLAKAKKINTSDEVAQVGTISANGEKQIGL
DIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDA
FILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAV
KAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVD
GAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEK
KDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKGENDDQDAGVNIVRRALQSPA
RQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAA
SVASLLITTEAMIAELPKKDAPAMPGGMGGMGGMDMM"
misc_feature complement(399100..400677)
/gene="groEL"
/locus_tag="SMa0744"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12849"
/db_xref="CDD:237230"
misc_feature complement(399112..400671)
/gene="groEL"
/locus_tag="SMa0744"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:239460"
misc_feature complement(order(399115..399135,399142..399144,
399307..399309,399523..399525,399529..399531,
399910..399912,399994..399996,400090..400092,
400453..400455,400462..400464,400474..400476,
400498..400500,400504..400506,400534..400536,
400540..400545,400558..400560,400564..400575,
400606..400608,400657..400659,400669..400671))
/gene="groEL"
/locus_tag="SMa0744"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:239460"
misc_feature complement(order(399196..399198,399202..399204,
399322..399324,399436..399438,399487..399489,
400231..400233,400408..400410,400420..400422,
400582..400590))
/gene="groEL"
/locus_tag="SMa0744"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:239460"
misc_feature complement(order(399283..399285,399292..399297,
399301..399303,399328..399330,399382..399384,
400354..400356))
/gene="groEL"
/locus_tag="SMa0744"
/note="stacking interactions; other site"
/db_xref="CDD:239460"
misc_feature complement(order(399451..399456,399556..399558,
400102..400104,400123..400125,400258..400260))
/gene="groEL"
/locus_tag="SMa0744"
/note="hinge regions; other site"
/db_xref="CDD:239460"
gene complement(400756..401052)
/gene="groES"
/locus_tag="SMa0745"
/db_xref="GeneID:1235216"
CDS complement(400756..401052)
/gene="groES"
/locus_tag="SMa0745"
/function="Cell processes; Chaperoning"
/note="10 kDa chaperonin; Cpn10; GroES; forms
homoheptameric ring; binds to one or both ends of the
GroEL double barrel in the presence of adenine nucleotides
capping it; folding of unfolded substrates initiates in a
GroEL-substrate bound and capped by GroES; release of the
folded substrate is dependent on ATP binding and
hydrolysis in the trans ring"
/codon_start=1
/transl_table=11
/product="co-chaperonin GroES"
/protein_id="NP_435642.1"
/db_xref="GI:16262849"
/db_xref="GeneID:1235216"
/translation="MASTDFRPLHDRVVVRRVESEEKTKGGVIIPDTAKEKPQEGEIV
AVGSGARDESGKVVPLDVKAGDRILFGKWSGTEVKINGEDLLIMKEADIMGVIG"
misc_feature complement(400762..401037)
/gene="groES"
/locus_tag="SMa0745"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:238197"
misc_feature complement(order(400765..400773,400819..400821,
400825..400827,400840..400842,400870..400872,
400933..400938,401017..401019,401026..401028,
401032..401034))
/gene="groES"
/locus_tag="SMa0745"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:238197"
misc_feature complement(400951..400992)
/gene="groES"
/locus_tag="SMa0745"
/note="mobile loop; other site"
/db_xref="CDD:238197"
misc_feature complement(order(400876..400878,400909..400911))
/gene="groES"
/locus_tag="SMa0745"
/note="roof hairpin; other site"
/db_xref="CDD:238197"
gene 401607..401768
/locus_tag="SMa0747"
/db_xref="GeneID:1235217"
CDS 401607..401768
/locus_tag="SMa0747"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435643.1"
/db_xref="GI:16262850"
/db_xref="GeneID:1235217"
/translation="MRLPGLSLSEKVPAAKDKPAKLAQKDRDARWTVKYSKVNATDEN
AVIWRDQAV"
gene 402138..402587
/locus_tag="SMa0748"
/db_xref="GeneID:1235218"
CDS 402138..402587
/locus_tag="SMa0748"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction Excellent match (e-58, 111/141)
to hypothetical MucR family regulatory protein (O33682)
near SyrB in R. meliloti"
/codon_start=1
/transl_table=11
/product="MucR family transcriptional regulator"
/protein_id="NP_435644.2"
/db_xref="GI:193782601"
/db_xref="GeneID:1235218"
/translation="MTESHSNELRLELTSRIVSAYLSRNVIAPSELPHLIQQTYGSLG
KTSEPTKTPATVEEQRPAVPIKKSVTDDFIVCLEDGKSFKSLKRHLMAKYALTPEQYR
EKWKLPADYPMVAPNYARKRSELARATGLGKKSAANLSPSLQAVRSA"
misc_feature 402138..402563
/locus_tag="SMa0748"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG4957"
/db_xref="CDD:227293"
gene complement(402820..403107)
/locus_tag="SMa5003"
/db_xref="GeneID:6435266"
CDS complement(402820..403107)
/locus_tag="SMa5003"
/note="Has weak similarity to short length of sequence
found in carboxy-terminus of transposases; Probable
protein fragment"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000344.1"
/db_xref="GI:193782602"
/db_xref="GeneID:6435266"
/translation="MGMNRVVGGGGVQGWWRSTSRWSAMARGGTIHRAALACDQIRGG
LYHAYKTVPEALAGIGRYLTFYNRRHPHSSLDRQTPDQAYFNTLTPMMAAA"
misc_feature complement(402868..>402972)
/locus_tag="SMa5003"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
gene complement(403178..404056)
/locus_tag="SMa0750"
/db_xref="GeneID:1235219"
CDS complement(403178..404056)
/locus_tag="SMa0750"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction match (e-21) to several
transcriptional activator proteins controlling D-serine
deaminase and glycine cleavage system. ProDom finds match
(e-8) to superfamily containing nodD and to DNA binding
domain in parts of protein match begins around aa68 but
left untrimmed from glimmer prediction"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_435645.1"
/db_xref="GI:16262852"
/db_xref="GeneID:1235219"
/translation="MPRPYEFSSMTALVCFEAAARNASFKKAAQEMNVTPAAISHQIK
ALEMDLKCSLFLRHHRGVELTEKGALLFVVIQRGFETISETLTQIRERPETVDVTIGA
TTAFSSLWLTPKISAFWKIHPSITVSQVVSDVPGMTSRCDLTIHYGNPQENGVEYRKL
FQDHIIALGTTRFAAEHRIARLEDLLKAPLIHSSSNETGWTAWDDWFAVLGCPAPKGR
SFYVNNYMIALQAAQDDVGAVLGWDGLVGSLVNEGRLVKLVQESIPSPVGFHLRIHRR
ATAKARLFADWLVEAT"
misc_feature complement(403184..404032)
/locus_tag="SMa0750"
/note="putative choline sulfate-utilization transcription
factor; Region: chol_sulf_TF; TIGR03418"
/db_xref="CDD:188320"
misc_feature complement(403853..404029)
/locus_tag="SMa0750"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(403193..403765)
/locus_tag="SMa0750"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:245600"
misc_feature complement(order(403355..403360,403364..403369,
403385..403390,403397..403408,403664..403684,
403688..403690,403700..403702,403709..403714,
403718..403723))
/locus_tag="SMa0750"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 404204..405442
/locus_tag="SMa0751"
/db_xref="GeneID:1235220"
CDS 404204..405442
/locus_tag="SMa0751"
/function="Small molecule metabolism; Degradation"
/note="glimmer prediction, start codon changed based on
codon usage and S_D consensus; match (e-25) to benzene,
anthranillate, toluene dioxygenases from various sources
in amino half of protein"
/codon_start=1
/transl_table=11
/product="Ring-hydroxylating dioxygenase"
/protein_id="NP_435646.1"
/db_xref="GI:16262853"
/db_xref="GeneID:1235220"
/translation="MTANPTSIHQRLDRRLSGFSLEQPFYTSPEVYALDLQHIFYKQW
LYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVA
KLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQ
TFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPL
DPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMD
GKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPTETEVTTTWLV
HKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQF
VDWYAASLERALAPRQVAAE"
misc_feature 404261..405418
/locus_tag="SMa0751"
/note="Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General function
prediction only]; Region: HcaE; COG4638"
/db_xref="CDD:226985"
misc_feature 404333..404680
/locus_tag="SMa0751"
/note="Rieske non-heme iron oxygenase (RO) family,
N-terminal Rieske domain of the oxygenase alpha subunit;
The RO family comprise a large class of aromatic
ring-hydroxylating dioxygenases found predominantly in
microorganisms. These enzymes enable...; Region:
Rieske_RO_Alpha_N; cd03469"
/db_xref="CDD:239551"
misc_feature order(404459..404461,404465..404470,404519..404521,
404528..404530,404534..404536)
/locus_tag="SMa0751"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:239551"
misc_feature 404720..405403
/locus_tag="SMa0751"
/note="C-terminal catalytic domain of GbcA (glycine
betaine catabolism A) from Pseudomonas aeruginosa PAO1 and
related aromatic ring hydroxylating dioxygenases; Region:
RHO_alpha_C_GbcA-like; cd08884"
/db_xref="CDD:176893"
misc_feature order(404768..404773,404783..404785,404792..404797,
404804..404806,404810..404815,404825..404827,
405173..405178,405287..405295,405299..405313,
405344..405352,405356..405358,405368..405370,
405377..405379,405389..405391)
/locus_tag="SMa0751"
/note="putative alpha subunit interface [polypeptide
binding]; other site"
/db_xref="CDD:176893"
misc_feature order(404795..404800,404804..404809,404813..404818,
404828..404830,405083..405088,405092..405094,
405116..405118,405122..405124,405143..405145,
405149..405151,405239..405241,405248..405253,
405269..405274,405281..405283)
/locus_tag="SMa0751"
/note="putative active site [active]"
/db_xref="CDD:176893"
misc_feature order(404795..404800,404804..404809,404813..404818,
404828..404830,405083..405088,405092..405094,
405116..405118,405122..405124,405143..405145,
405149..405151,405239..405241,405248..405253,
405269..405274)
/locus_tag="SMa0751"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:176893"
misc_feature order(404813..404815,404828..404830,405281..405283)
/locus_tag="SMa0751"
/note="Fe binding site [ion binding]; other site"
/db_xref="CDD:176893"
gene 405447..406508
/locus_tag="SMa0752"
/db_xref="GeneID:1235221"
CDS 405447..406508
/locus_tag="SMa0752"
/function="Small molecule metabolism; Degradation"
/note="glimmer prediction Trimmed to met20 of glimmer
prediction to eliminate overlap with SMA0751 match (e-31)
to aromatic (aniline, phthalate) dioxygenase reductase
subunit over most of protein length ProDom finds three
domains with matches to oxidoreductases"
/codon_start=1
/transl_table=11
/product="dioxygenase reductase subunit"
/protein_id="NP_435647.1"
/db_xref="GI:16262854"
/db_xref="GeneID:1235221"
/translation="MTQFKQLSFWSDAEPLECVTRTPEAPNVVTFSFQSPSGALFNHD
PGQFVTLELPAPGGPLYRTYTISSAPSRPTALTITVKAQDGSTGTRWMLDNLHKGMRI
RAIGPAGKFSIVHHPADKYLFISAGSGITPMVAMTTWLYDSGREPDVVFINCARRPSE
IILRDRMELMASRIVGIDLKWVVEEPDPFRSWTGYRGMFNQIMLGLMAQDYLEREVFC
CGPEPFMRAVREALAGLGYDMSRYHQESFTAEPGHAEDVPEDVIPDEQNHAEIAFALS
GVTTRCSETDTILAAAKAAGLVIPSGCSMGICGTCKVRKTEGQVHMVHNGGITDEDVE
DGYILACCSKPLRRVSVEA"
misc_feature 405474..406322
/locus_tag="SMa0752"
/note="Flavodoxin reductases (ferredoxin-NADPH reductases)
family 1 [Energy production and conversion]; Region: Hmp;
COG1018"
/db_xref="CDD:223949"
misc_feature 405492..406187
/locus_tag="SMa0752"
/note="Iron-sulfur binding ferredoxin reductase (FNR)
proteins combine the FAD and NAD(P) binding regions of FNR
with an iron-sulfur binding cluster domain.
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing
enzyme that catalyzes the reversible electron...; Region:
FNR_iron_sulfur_binding_1; cd06215"
/db_xref="CDD:99811"
misc_feature order(405588..405590,405630..405641,405681..405689,
405693..405695,405705..405713,405828..405830,
405837..405839,406179..406181,406185..406187)
/locus_tag="SMa0752"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99811"
misc_feature order(405630..405632,405636..405641)
/locus_tag="SMa0752"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99811"
misc_feature order(405702..405704,405711..405713,405720..405722,
405741..405743,405765..405767,405771..405773)
/locus_tag="SMa0752"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99811"
misc_feature order(405813..405815,405825..405836,405840..405842)
/locus_tag="SMa0752"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99811"
misc_feature order(405828..405833,405906..405914,406104..406109)
/locus_tag="SMa0752"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99811"
misc_feature 406254..406502
/locus_tag="SMa0752"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:238126"
misc_feature order(406341..406346,406353..406355,406362..406364,
406368..406379,406464..406469)
/locus_tag="SMa0752"
/note="catalytic loop [active]"
/db_xref="CDD:238126"
misc_feature order(406353..406355,406368..406370,406377..406379,
406467..406469)
/locus_tag="SMa0752"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:238126"
gene 406804..407496
/locus_tag="SMa0753"
/db_xref="GeneID:1235222"
CDS 406804..407496
/locus_tag="SMa0753"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; flavin reductase like domain.
Similar to SMA0758 of S. meliloti pSyma"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435648.1"
/db_xref="GI:16262855"
/db_xref="GeneID:1235222"
/translation="MKADVFDPRALREAFGAFPTAVTVITASDPAGRPVGFTANSFTS
VSLDPPLLLVCVAKTARDYSTMTAAEHFAINILSEAQKDVSIKFARPLEDRFAAVDWA
RAPNGCPIFAQVAAWFECSMHDVIEAGDHVMMVGRVTAFKSSGLNGLGYARGGYFAPS
VAAKANSSAAGGEIGAVAVLERHAALFPLGDQNLSLPRYSAAGGDPAKTLASQLERSG
LSVHDWLSLLDL"
misc_feature 406846..407271
/locus_tag="SMa0753"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:214900"
gene 407780..408106
/locus_tag="SMa0754"
/db_xref="GeneID:1235223"
CDS 407780..408106
/locus_tag="SMa0754"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435649.1"
/db_xref="GI:16262856"
/db_xref="GeneID:1235223"
/translation="MRVPRSSIWIERHKRAAGFWLAEDYFTGTKCIGVILRAGGEVLR
NRDCAGQGHSARQPRDYRSGEEVTSARQADWEKLRRMPADDTLVAPGWWFRSHQVWYL
QARGRW"
gene 409254..410186
/gene="nodD2"
/locus_tag="SMa0757"
/db_xref="GeneID:1235224"
CDS 409254..410186
/gene="nodD2"
/locus_tag="SMa0757"
/function="Nodulation"
/note="LysR family; bacterial regulatory helix-turn-helix
motif"
/codon_start=1
/transl_table=11
/product="NodD2 nod box-dependent transcription activator"
/protein_id="NP_435650.1"
/db_xref="GI:16262857"
/db_xref="GeneID:1235224"
/translation="MRFRGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARL
RTYFGDELFSMQGRELIPTPRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRII
LSDFMTLVFFERVVERLAREAPGVSFELLPLDDDPYELLRRGDVDFLVLPDLFMSSAH
PKAKLFAEALVCVGCPTNEQLLGELSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGF
KRRVELVVPGFTLIPPLLPHTNRIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEAVQ
WPALHNKDPGNIWMREILLQEASRSEFQGETSLE"
misc_feature 409305..410156
/gene="nodD2"
/locus_tag="SMa0757"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 409305..409454
/gene="nodD2"
/locus_tag="SMa0757"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 409545..410144
/gene="nodD2"
/locus_tag="SMa0757"
/note="The C-terminal substsrate binding domain of NodD
family of LysR-type transcriptional regulators that
regulates the expression of nodulation (nod) genes;
contains the type 2 periplasmic binding fold; Region:
PBP2_NodD; cd08462"
/db_xref="CDD:176151"
misc_feature order(409563..409565,409569..409574,409584..409586,
409755..409757,409866..409868,410070..410072)
/gene="nodD2"
/locus_tag="SMa0757"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:176151"
misc_feature order(409566..409568,409575..409580,409587..409592,
409599..409604,409608..409613,409620..409625,
409629..409643,409647..409649,409833..409835,
409920..409934,409941..409946,409953..409958,
409965..409967,410007..410009)
/gene="nodD2"
/locus_tag="SMa0757"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176151"
gene 411107..411682
/locus_tag="SMa0758"
/db_xref="GeneID:1235441"
CDS 411107..411682
/locus_tag="SMa0758"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; flavin reductase like domain.
Similar to SMA0753 of S. meliloti pSyma"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435651.2"
/db_xref="GI:193782603"
/db_xref="GeneID:1235441"
/translation="MKADVFDARALREAFGAFPTAVTAITASDPAGRPVGFTANSFTS
VSLDPPLLLVCVAKTARDYSTMTAAEHFAINILSEAQKDVSIKFARPLEDRFAAVDWA
RAPNGCPIFAQVAAWFECSMHDVIEAGDHVMMVGRVTAFKSSGLNGLGYARGGYFAPS
VAAKANSSAAGGEIGAVAVLERHAALFPLGD"
misc_feature 411149..411574
/locus_tag="SMa0758"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:214900"
gene 411913..412314
/locus_tag="SMa0759"
/db_xref="GeneID:1235442"
CDS 411913..412314
/locus_tag="SMa0759"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; similarity to middle of FixJ"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435652.1"
/db_xref="GI:16262859"
/db_xref="GeneID:1235442"
/translation="MVVEVKKAGAVDFIEKPFENTVIIEVIERASEHLVVPQADADEV
NDIRARLQTLSERERQVLSAVVADLPNKSIAYDLDIQSSLRRGASRERHGQNEGEEPS
PPRANGSHRWLRSFLSRRVDLAQCGALPQAA"
misc_feature <411913..412299
/locus_tag="SMa0759"
/note="Response regulator [Signal transduction
mechanisms]; Region: TtrR; COG4566"
/db_xref="CDD:226932"
misc_feature <411913..412002
/locus_tag="SMa0759"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cl17736"
/db_xref="CDD:248290"
misc_feature 411958..411966
/locus_tag="SMa0759"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 412063..>412152
/locus_tag="SMa0759"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cl17315"
/db_xref="CDD:247869"
gene 412363..412710
/gene="fixT2"
/locus_tag="SMa0760"
/db_xref="GeneID:1235443"
CDS 412363..412710
/gene="fixT2"
/locus_tag="SMa0760"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="Interacts with FixL, counteracts activity of FixLJ
two-component system"
/codon_start=1
/transl_table=11
/product="FixT2 anti-kinase"
/protein_id="NP_435653.1"
/db_xref="GI:16262860"
/db_xref="GeneID:1235443"
/translation="MLDGKTIIVVAADQGLRRSVAFALEVEGYSTESYDTVQKAEASS
GEALCTILDDEILKSETVAATQLLKNLGRRAILLVDGLSAPQPPADYTTLTKPFSGAD
LLGVINSPTEAAK"
misc_feature 412363..>412683
/gene="fixT2"
/locus_tag="SMa0760"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:225114"
gene 412790..413425
/gene="fixK"
/locus_tag="SMa0762"
/db_xref="GeneID:1235444"
CDS 412790..413425
/gene="fixK"
/locus_tag="SMa0762"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="transcriptional regulator that positively regulated
fixLJ operon; upregulated transcription by FixJ; part of
global network that controls expression of aerobic
respiratory terminal oxidases and carbon and nitrogen
metabolic enzymes"
/codon_start=1
/transl_table=11
/product="transcriptional regulator FixK"
/protein_id="NP_435654.1"
/db_xref="GI:16262861"
/db_xref="GeneID:1235444"
/translation="MYAAAQAKPQSIEVEHLGPAPMSGPHLVATYKPGREIYAQGDLN
DKCYQVSTGAVRVYRLLSDGRRQVVSFHLPGEMFGFEAGSNHSFFAEAITETTLAIFG
RRNMQERSRELLALALTGMARAQQHLLVIGRQCAVERIAAFLVDLCERQGGGRQLRLP
MSRQDIADYLGLTIETVSRVVTKLKERSLIALRDARTIDIVRLEALRSLCS"
misc_feature 412796..413419
/gene="fixK"
/locus_tag="SMa0762"
/note="transcriptional regulator FixK; Provisional;
Region: fixK; PRK09391"
/db_xref="CDD:236494"
misc_feature 412871..413143
/gene="fixK"
/locus_tag="SMa0762"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:237999"
misc_feature order(413024..413029,413045..413053)
/gene="fixK"
/locus_tag="SMa0762"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:237999"
misc_feature order(413111..413119,413129..413137)
/gene="fixK"
/locus_tag="SMa0762"
/note="flexible hinge region; other site"
/db_xref="CDD:237999"
misc_feature 413195..413389
/gene="fixK"
/locus_tag="SMa0762"
/note="helix_turn_helix, cAMP Regulatory protein
C-terminus; DNA binding domain of prokaryotic regulatory
proteins belonging to the catabolite activator protein
family; Region: HTH_CRP; cd00092"
/db_xref="CDD:238044"
misc_feature 413204..413209
/gene="fixK"
/locus_tag="SMa0762"
/note="putative switch regulator; other site"
/db_xref="CDD:238044"
misc_feature order(413267..413269,413273..413281,413306..413308)
/gene="fixK"
/locus_tag="SMa0762"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:238044"
misc_feature 413306..413326
/gene="fixK"
/locus_tag="SMa0762"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238044"
misc_feature order(413309..413314,413324..413326)
/gene="fixK"
/locus_tag="SMa0762"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238044"
misc_feature 413309..413314
/gene="fixK"
/locus_tag="SMa0762"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:238044"
gene 413437..414084
/locus_tag="SMa0763"
/db_xref="GeneID:1235445"
CDS 413437..414084
/locus_tag="SMa0763"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction. local similarity to SMA1151 and
SMA1223 of S. meliloti pSyma"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435655.1"
/db_xref="GI:16262862"
/db_xref="GeneID:1235445"
/translation="MRAQPSPRVAAADRAWWEQGKKRCSYGRFLVLNVTDSRRWRSGA
IGLLQGRPALHRADHVRALGQLHLLFFYVRPENRLDAQQSKMSLQIAEFASNRQWKSV
VVTGRYQELPATQGCHHERIHAWSLREKKPNWWKPGGHKPVAKPSAHIFVCVVMDEIA
GRAASAAVAGVLRAELASRPQRARVTGPAKGPGCRVSDVAVTPVSEARAATLPLS"
misc_feature 413449..413913
/locus_tag="SMa0763"
/note="Predicted flavin-nucleotide-binding protein
[General function prediction only]; Region: COG3467"
/db_xref="CDD:225998"
gene 414187..415806
/gene="fixN2"
/locus_tag="SMa0765"
/db_xref="GeneID:1235446"
CDS 414187..415806
/gene="fixN2"
/locus_tag="SMa0765"
/EC_number="1.9.3.1"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="CcoN; FixN"
/codon_start=1
/transl_table=11
/product="cbb3-type cytochrome c oxidase subunit I"
/protein_id="NP_435656.1"
/db_xref="GI:16262863"
/db_xref="GeneID:1235446"
/translation="MKHTVEMVVLAVGAFLALVGAGLAQDRLFGAHMWVLFFVLLGGT
LVLMRRVDFRPAAAGRRAGETEYFDEVVKYGVIATVFWGVVGFLVGVVVALQLAFPDL
NVEPWFNFGRVRPLHTSAVIFAFGGNALIATSFYVVQRTSRARLFGGDLGWFVFWGYQ
LFIVLAATGYLLGITQSREYAEPEWYVDLWLTIVWVAYLAVFLGTVLMRKEPHIYVAN
WFYLAFIVTIAMLHIVNNLAVPVSFMGSKSYSAFAGVQDALTQWWYGHNAVGFFLTAG
FLAMMYYFIPKQVNRPVYSYRLSIIHFWALIFMYIWAGPHHLHYTALPDWAQTLGMVF
SIMLWMPSWGGMINGLMTLSGAWDKIRTDPVVRMMVMAVAFYGMATFEGPMMSIKTVN
SLSHYTDWTIGHVHSGALGWNGLITFGAVYYLVPKLWNRERLYSLQMVNWHFWLATLG
IVVYAATMWVAGIQQGLMWREYDDQGFLVYSFAESVAAMFPYYVMRAAGGALFLAGAL
VMAFNVTMTILGRVRDEAAALDAAPLPAPAE"
misc_feature 414262..415740
/gene="fixN2"
/locus_tag="SMa0765"
/note="Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3
oxidase, the terminal oxidase in the respiratory chains of
proteobacteria, is a multi-chain transmembrane protein
located in the cell membrane. Like other cytochrome
oxidases, it catalyzes the reduction...; Region:
cbb3_Oxidase_I; cd01661"
/db_xref="CDD:238831"
misc_feature order(414406..414408,415402..415404,415414..415416,
415546..415548,415657..415659)
/gene="fixN2"
/locus_tag="SMa0765"
/note="Low-spin heme binding site [chemical binding];
other site"
/db_xref="CDD:238831"
misc_feature order(414943..414945,414958..414963,415360..415362,
415372..415377,415591..415593)
/gene="fixN2"
/locus_tag="SMa0765"
/note="Putative water exit pathway; other site"
/db_xref="CDD:238831"
misc_feature order(414982..414984,415132..415137,415396..415398)
/gene="fixN2"
/locus_tag="SMa0765"
/note="Binuclear center (active site) [active]"
/db_xref="CDD:238831"
misc_feature order(415135..415137,415372..415377,415591..415596)
/gene="fixN2"
/locus_tag="SMa0765"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:238831"
gene 415818..416549
/gene="fixO2"
/locus_tag="SMa0766"
/db_xref="GeneID:1235447"
CDS 415818..416549
/gene="fixO2"
/locus_tag="SMa0766"
/EC_number="1.9.3.1"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="CcoO; FixO"
/codon_start=1
/transl_table=11
/product="cbb3-type cytochrome c oxidase subunit II"
/protein_id="NP_435657.1"
/db_xref="GI:16262864"
/db_xref="GeneID:1235447"
/translation="MSILDKHALLERNATLLLVGSLLVVSIGGIVEIAPLFYLENTIE
KVEGMRPYSPLELAGRDIYVREGCYVCHSQMIRPFRDEVERYGHYSLAAESMYDHPFQ
WGSKRTGPDLARVGDRYSNEWHVQHMIEPRSVVPESVMPSYAFLKDTPLEVTNIAMNL
EANRAVGVPYTDEMIDNATADLKAQADPDADASGVEARYPKAKLGDFDGDPQRLSEMD
ALIAYLQMLGTLVDFSTYDDTTGYR"
misc_feature 415833..416534
/gene="fixO2"
/locus_tag="SMa0766"
/note="Cbb3-type cytochrome oxidase, cytochrome c subunit
[Energy production and conversion]; Region: CcoO; COG2993"
/db_xref="CDD:225540"
misc_feature 415836..416513
/gene="fixO2"
/locus_tag="SMa0766"
/note="Cytochrome C oxidase, mono-heme subunit/FixO;
Region: FixO; pfam02433"
/db_xref="CDD:111339"
gene 416561..416713
/gene="fixQ2"
/locus_tag="SMa0767"
/db_xref="GeneID:1235448"
CDS 416561..416713
/gene="fixQ2"
/locus_tag="SMa0767"
/EC_number="1.9.3.1"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/codon_start=1
/transl_table=11
/product="FixQ2 nitrogen fixation protein"
/protein_id="NP_435658.1"
/db_xref="GI:16262865"
/db_xref="GeneID:1235448"
/translation="METYTAMRHFADSWGLLAMTLFFLGVVLFIFRPGAKKSAAQASA
IPLNED"
misc_feature 416561..416701
/gene="fixQ2"
/locus_tag="SMa0767"
/note="Cytochrome cbb oxidase CcoQ. Cytochrome cbb3
oxidase, the terminal oxidase in the respiratory chains of
proteobacteria, is a multi-chain transmembrane protein
located in the cell membrane. Like other cytochrome
oxidases, it catalyzes the reduction of O2...; Region:
cbb3_Oxidase_CcoQ; cd01324"
/db_xref="CDD:238647"
gene 416717..417580
/gene="fixP2"
/locus_tag="SMa0769"
/db_xref="GeneID:1235449"
CDS 416717..417580
/gene="fixP2"
/locus_tag="SMa0769"
/EC_number="1.9.3.1"
/function="Small molecule metabolism; Energy transfer;
electron transport"
/note="translation start extended 57 residues upstream
from glimmer prediction to better coincide with starts of
other cytochrome c oxidases"
/codon_start=1
/transl_table=11
/product="FixP2 Diheme c-type cytochrome"
/protein_id="NP_435659.1"
/db_xref="GI:16262866"
/db_xref="GeneID:1235449"
/translation="MTDKHIDEISGVETTGHEWDGIRELNNPLPRWWVYSFYATIIWA
IGYAVAYPSWPMLTESTKGVLGYSSRAEVSAELAEAKAAQAGNLERIASSAVEDIMAN
PELKQFAITIGASAFKVNCAQCHGSGTAGGKGFTNLNDDEWLWGGKPEEIYQTIAHGI
RYSGDGETRVSEMPAFTDTLAPREVRATAAYVASLTGTPSNPALVEPGKQLFAENCAS
CHGADAKGTREFGAPNLADAIWLNGEGEQAIIDQMKSPKHGVMPAWLQRIGDPVVKEL
AVFVHSLGGGE"
misc_feature 416747..417577
/gene="fixP2"
/locus_tag="SMa0769"
/note="cytochrome c oxidase, cbb3-type, subunit III;
Region: ccoP; TIGR00782"
/db_xref="CDD:129864"
misc_feature 417041..417292
/gene="fixP2"
/locus_tag="SMa0769"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
misc_feature 417323..417556
/gene="fixP2"
/locus_tag="SMa0769"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
gene 417769..418242
/locus_tag="SMa0771"
/db_xref="GeneID:1235450"
CDS 417769..418242
/locus_tag="SMa0771"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; heavy metal associated domain;
partial similarity to FixI"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435660.1"
/db_xref="GI:16262867"
/db_xref="GeneID:1235450"
/translation="MHHHHRDGVAGKIQVEQSKRARVNLSTRRVSIVWKEEVAGKRSD
PGELVRAISERGHETHIFTHGEGEGDAVGEPISVSSGDAVEAGTLNLTGPLVAPGDGK
RAQLLPCRDHGADGGGRRREGAKLVSSTARIKVIQTIDFTNHQVCSIGDKAKEFK"
gene 418345..418896
/gene="nodL"
/locus_tag="SMa0772"
/db_xref="GeneID:1235451"
CDS 418345..418896
/gene="nodL"
/locus_tag="SMa0772"
/function="Nodulation"
/codon_start=1
/transl_table=11
/product="NodL Nod factor acetyltransferase"
/protein_id="NP_435661.1"
/db_xref="GI:16262868"
/db_xref="GeneID:1235451"
/translation="MTRTQKEKMLAGEMYNAADPEIQADLLAAGAWLKRYNSTLGDSA
EQWHLFLREGLGEVGPGAVIRPPFHCDYGFNISIGAHAYMNFNCVILDVAKVTIGDGT
AIGPAVQIYTADHPDDPEQRQAGLQLGRPVRIGKHVWIGGGAIILPGVTIGDHAVVGA
GSVVTRDVPPGAKVMGSPARVRG"
misc_feature 418354..418887
/gene="nodL"
/locus_tag="SMa0772"
/note="maltose O-acetyltransferase; Provisional; Region:
PRK10092"
/db_xref="CDD:182235"
misc_feature 418384..418887
/gene="nodL"
/locus_tag="SMa0772"
/note="Maltose O-acetyltransferase (MAT) and Galactoside
O-acetyltransferase (GAT): MAT and GAT catalyze the
CoA-dependent acetylation of the 6-hydroxyl group of their
respective sugar substrates. MAT acetylates maltose and
glucose exclusively at the C6...; Region: LbH_MAT_GAT;
cd03357"
/db_xref="CDD:100047"
misc_feature order(418393..418395,418420..418422,418555..418557,
418591..418593,418597..418599,418615..418617,
418621..418623,418651..418653,418657..418659,
418675..418677,418681..418683,418687..418689,
418693..418695,418714..418719,418723..418725,
418759..418761,418765..418770,418783..418785,
418819..418824,418831..418833,418837..418842,
418867..418878,418882..418884)
/gene="nodL"
/locus_tag="SMa0772"
/note="active site"
/db_xref="CDD:100047"
misc_feature order(418393..418395,418420..418422,418555..418557,
418591..418593,418597..418599,418615..418617,
418621..418623,418651..418653,418681..418683,
418687..418689,418714..418719,418723..418725)
/gene="nodL"
/locus_tag="SMa0772"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100047"
misc_feature order(418423..418425,418432..418434,418444..418446,
418465..418467,418543..418545,418549..418554,
418600..418605,418645..418647,418651..418653,
418663..418665,418669..418671,418675..418677,
418687..418689,418693..418701,418705..418710,
418726..418728,418732..418734,418753..418755,
418759..418761,418768..418776,418783..418785,
418807..418809,418813..418815,418822..418827,
418837..418839,418873..418875)
/gene="nodL"
/locus_tag="SMa0772"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100047"
misc_feature order(418675..418677,418681..418683,418687..418689,
418693..418695,418759..418761,418765..418770,
418783..418785,418819..418824,418837..418842,
418867..418872,418876..418878)
/gene="nodL"
/locus_tag="SMa0772"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100047"
gene 419284..420714
/gene="noeA"
/locus_tag="SMa0773"
/db_xref="GeneID:1235452"
CDS 419284..420714
/gene="noeA"
/locus_tag="SMa0773"
/function="Nodulation"
/note="Required for nodulation of Medicago littoralis"
/codon_start=1
/transl_table=11
/product="NoeA host specific nodulation protein"
/protein_id="NP_435662.1"
/db_xref="GI:16262869"
/db_xref="GeneID:1235452"
/translation="MARMADSKLVAAAPRPGRVAGSFRDPSGQVFHFQDRILRTMDSA
AAIEFASAERVMRQLVDEGRLVDFSDAEPSLHQLFQGSIARVLQHPLLEQITYPYEWS
FAGLKAAALFHLQLQLDLLDQGFCLSDATAYNVQFEGSRPTFIDHLSIKPYRDGQLWY
GHKQFCEQFLVPLLLRSVFDITHHSWYRGNLEGVPSADFVKLLSTRHWFSHKLFMHII
LPAKLQSSRTSQTKVDLGDSRARRLPKDAFRAMLAQLYSWISGLKVDVGKQSVWQGYA
ANNTYTATQRSDKGQYVAEFVAQHKPRTIIDLGCNTGDFSYVALENGAEKAIGFDFDP
HALDAAFDRSVQTSKNFLPLYLDARNPSPSQGWGERERQGFSSRFSADAVLALAFEHH
LAIAHNVPLAEVVAWVTQVAPKGIIEFVPKEDETVRRMLAGREDIFSDYNEEAFASAL
SQKARVVNKHLIPGSKRTLYTFERSE"
misc_feature 419371..420708
/gene="noeA"
/locus_tag="SMa0773"
/note="Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis]; Region: PrmA;
COG2264"
/db_xref="CDD:225173"
misc_feature 420193..>420303
/gene="noeA"
/locus_tag="SMa0773"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(420205..420225,420274..420279)
/gene="noeA"
/locus_tag="SMa0773"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 420721..422382
/gene="noeB"
/locus_tag="SMa0774"
/db_xref="GeneID:1235453"
CDS 420721..422382
/gene="noeB"
/locus_tag="SMa0774"
/function="Nodulation"
/note="Required for host specific nodulation of Medicago
littoralis"
/codon_start=1
/transl_table=11
/product="NoeB host specific nodulation protein"
/protein_id="NP_435663.1"
/db_xref="GI:16262870"
/db_xref="GeneID:1235453"
/translation="MKRIVLLLSPLVILLSPIIDAFQGVYIDPRSDAGYAVIACVAII
GLALGMIATFCYKRGAVGNVVTAGTLAVTLFLFGDLSYGVFWRLADHIGMEGAAALAF
AGLVVLILILFKLMAAVPRMMAAFAVALLGSTVLDRGLITEASAEEPAPAVIYIVTDE
MIGISGIDTRLPHGAEAKAALSRVFQKHGFRLHSKAFSRHILTQVSVPAALNMDYSYN
FPGDRSHYAYPGEVTKFKVLSLFNLWHRQGLSVNVFQSAHLDFCKTEALVDCHTFASF
DGSRFIQRQRTEGGPYRDVPPASASLADVKALVEGNRQSLAMAAVGFVASNLLETKET
ALQEWHPRSYDQLAFPYWLGQFQNMILDKGRGNAFFAHFLFPHSPSVYNKDCKPTNRW
VERSYLTEVRGLAGQELDEARVKEYGFYFAQTLCLAKQLDKFFNAVLSDKRFQDATIV
VHGDHGSRISAGRNVETMSPRDYVDNYSALYAVRKPGVATGTDYKLHSVQWLNASLFR
GNVSEVAPTVVGSIQGKSDDPAVYAPITDPDHVAIMPMHDFDASH"
gene complement(422708..423034)
/locus_tag="SMa0775"
/db_xref="GeneID:1235454"
CDS complement(422708..423034)
/locus_tag="SMa0775"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435664.1"
/db_xref="GI:16262871"
/db_xref="GeneID:1235454"
/translation="MLLSEVLLVRSEHVVSSAHDVFERIVESLDPLAGGRTPSFAEEK
MPNETQSASVPGNTTLSGLIISVPETAGGPFPPLPLENKGEFVDVDSCAVERTVATQT
CFSLLR"
repeat_region complement(423316..424975)
/standard_name="ISRm23 fragment"
/note="Sma4004; 96% identical over length to ISRm23 of S.
meliloti pSyma"
/rpt_family="ISRm23 fragment"
gene complement(423440..424177)
/locus_tag="SMa0776"
/db_xref="GeneID:1235455"
CDS complement(423440..424177)
/locus_tag="SMa0776"
/function="Elements of external origin; Transposon-related
functions"
/note="glimmer prediction; similarity to IstB-like ATP
binding protein; identical to Sma1073"
/codon_start=1
/transl_table=11
/product="TRm23b IS ATP-binding protein"
/protein_id="NP_435665.1"
/db_xref="GI:16262872"
/db_xref="GeneID:1235455"
/translation="MLAHPTLDKLNAMGLAGMAKAFGELVANGEAEHLSHAEWLGLLL
EREWSSRYDRKLAARLRFAKLRHQATPEDVDYRADRGLDRALFMKLLGGDWINAHDNL
AICGPSGVGKSWLACALGHKACRDDRSVLYQRVPRLFAQLALARGDGRYARLQRTLGH
VQLLILDDWGLEPLNEQARHDLLEILEDRYGRRSTIITSQLPVSAWHSVIGDPTYADA
ILDRLVHNAHRVELSGDSLRRNLPRKA"
misc_feature complement(423446..424177)
/locus_tag="SMa0776"
/note="DNA replication protein [DNA replication,
recombination, and repair]; Region: DnaC; COG1484"
/db_xref="CDD:224401"
misc_feature complement(424022..424108)
/locus_tag="SMa0776"
/note="IstB-like ATP binding N-terminal; Region:
IstB_IS21_ATP; pfam08483"
/db_xref="CDD:117060"
misc_feature complement(423572..423937)
/locus_tag="SMa0776"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(423839..423862)
/locus_tag="SMa0776"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(423578..423580,423677..423679,
423836..423859))
/locus_tag="SMa0776"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(423674..423691)
/locus_tag="SMa0776"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene complement(424190..425086)
/locus_tag="SMa0779"
/db_xref="GeneID:1235456"
CDS complement(424190..425086)
/locus_tag="SMa0779"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; similarity to transposases;
local identity to SMA1070"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435666.1"
/db_xref="GI:16262873"
/db_xref="GeneID:1235456"
/translation="MACRQNEALSAPRMERVRNLKLYAGLSVSTNCSPGLERRRKWKL
RFVSSNVGCWAGCAIAHSIVWPRSMRRLANCSMISMISAFCAVSAPPAANCSRSLIVR
PLRPLPVERYVFAEWRIRRAGLDYHVEIERHYYSVPYRFAREQVEARITANTIEIFHK
GERIAAHRRSSGNGKHTTIPDHMPSAHRRFADWTIERIEREASAMGPDVALLCERILA
DRPHPEQGFRACLGIIRLNKSFGRDRVNAACGRALEIGARTYGSVRSILDNHLDRTAA
SNGAAPHEPIHHANIRGPRYYH"
misc_feature complement(424193..425059)
/locus_tag="SMa0779"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:34222"
gene 424904..425281
/locus_tag="SMa5028"
/db_xref="GeneID:6435267"
CDS 424904..425281
/locus_tag="SMa5028"
/note="Has similarity to hypothetical proteins from
Rhizobium sp; NGR234 plasmid pNGR234a and partial
similarity to ISRm30 transposase of S; meliloti; Possible
truncated ORF"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000345.1"
/db_xref="GI:193782604"
/db_xref="GeneID:6435267"
/translation="MCDGAAGPTANVRRYEPQLPLSPSFKSRTAVRTDAQARIEFEVT
HPFHPWRGQRFVLSTRQQNWGEDRVMFYDAQGRLRSLPASWTDVNEADLFSQVAAGRS
FSRPDDLSALASLIDRIKRRQEE"
repeat_region 424972..428289
/standard_name="ISRm30"
/note="SMa4015; nucleotide sequence is 99% identical to a
region on the S. meliloti chromosome (SMc04870)"
/rpt_family="ISRm30"
gene 425462..425911
/locus_tag="SMa0781"
/db_xref="GeneID:1235457"
CDS 425462..425911
/locus_tag="SMa0781"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; similar to hypothetical 16.8
kDa protein Y4OM from NGR234. Identical to S. meliloti
chromosomal protein Smc02302"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435667.1"
/db_xref="GI:16262874"
/db_xref="GeneID:1235457"
/translation="MTKEGKPDRLRQMGALNPKPEGVRAPWFREAGFFDPLDLVQVKY
EMLRHAREEGTNKADAAALFGLSRQTYYQAEAAFERDGMSGLLPRTRGPKSAHKLTGE
VMRLVEEHLDANGQLQARSLADLVHARLGISVHPRSIERAVARKKKR"
misc_feature 425588..425743
/locus_tag="SMa0781"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:222191"
misc_feature 425618..425896
/locus_tag="SMa0781"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:222216"
gene 425934..426203
/locus_tag="SMa0783"
/db_xref="GeneID:1235458"
CDS 425934..426203
/locus_tag="SMa0783"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; similar to hypothetical 9.6 kDa
protein Y40L from NGR234"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435668.1"
/db_xref="GI:16262875"
/db_xref="GeneID:1235458"
/translation="MSESGKDVYEALRADVICGTACARRMGAIVFHGLWRGLAVLIAP
HQSAVARQQSAPRFKTTSMVAHDRQLVHMLANMVLAAETGGSHVY"
gene 426193..428277
/locus_tag="SMa0785"
/db_xref="GeneID:1235459"
CDS 426193..428277
/locus_tag="SMa0785"
/function="Elements of external origin; Phage-related
functions and prophages"
/note="glimmer prediction; very similar to hypothetical
78.7 kDa protein Y4BA/Y4PH of NGR234; local similarity to
IS-like sequences"
/codon_start=1
/transl_table=11
/product="Recombinase"
/protein_id="NP_435669.1"
/db_xref="GI:16262876"
/db_xref="GeneID:1235459"
/translation="MSTDNAMKISADHLRRDAFLYVRQSSLRQVFENTESTKRQYALR
DRAVALGWPIERVHVIDNDLGLSGAQSQDRDGFQRLVTEVAMGHAGIVLGLEVSRLAR
NNADWHRLLELAAMSRTLIMDEDGVYDAASFNDRMLLGLKGTMSEAELHILKSRLQGG
ILNKARRGELELPLPIGLVYTPDMRVVLDPDRQIQDTVRMLFDTFREVGSACAVVRRL
RSEKILFPRRIRRGIGKGDVLWSEIDHSRVIQILHNPRYAGAFAYGRTRTIYNAKLKS
VQQKMPRSDWQVLIPQAHEGYISWDEFERNQTSLEQNAVGFSPGLRGRMPRQGNGLLQ
GRVLCGRCGARMRVHYEQFEGNLRPYYICNEAVVRHAGKACQWARGPAIDEAVSALLL
EAMAPTAIEVALAVQEEISQRVEQAASLRDKQLQRARYEAELARRRYLKVDPDNRLVA
DALEADWNGKLRDLDTLQREHERRNETDQSLLDGAMQERIRALAADFPGIWNNERTSP
VERKRMLGLLIEDVTLLVDEQINMHIRWRGGRTQSLAVARPRPMAVIRKTPEAVVALI
NELLETDNDQQIASRLNALGHRNWRGEAFTLKKVMLVRRAYGLKTRFERLRESGMLTG
EEVARRFGVSATTVHQLGRDGVLKRHRYATNHRYLYEPPGNVRLAKGVGGRYGSRKPR
LIDAQPIQQGAS"
misc_feature 426238..426951
/locus_tag="SMa0785"
/note="Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair];
Region: PinR; COG1961"
/db_xref="CDD:224872"
misc_feature 426250..426672
/locus_tag="SMa0785"
/note="Serine Recombinase family, catalytic domain; a DNA
binding domain may be present either N- or C-terminal to
the catalytic domain. These enzymes perform site-specific
recombination of DNA molecules by a concerted, four-strand
cleavage and rejoining...; Region: Ser_Recombinase;
cd00338"
/db_xref="CDD:238206"
misc_feature order(426259..426261,426265..426267,426484..426489,
426496..426498)
/locus_tag="SMa0785"
/note="catalytic residues [active]"
/db_xref="CDD:238206"
misc_feature 426265..426267
/locus_tag="SMa0785"
/note="catalytic nucleophile [active]"
/db_xref="CDD:238206"
misc_feature 426781..427131
/locus_tag="SMa0785"
/note="Recombinase; Region: Recombinase; pfam07508"
/db_xref="CDD:219439"
misc_feature 427186..427368
/locus_tag="SMa0785"
/note="Recombinase zinc beta ribbon domain; Region:
Zn_ribbon_recom; pfam13408"
/db_xref="CDD:222109"
gene complement(428239..429057)
/locus_tag="SMa0787"
/db_xref="GeneID:1235460"
CDS complement(428239..429057)
/locus_tag="SMa0787"
/function="Elements of external origin; Transposon-related
functions"
/note="glimmer prediction; Integrase core domain
similarity; identical to N-terminus of SMA1070"
/codon_start=1
/transl_table=11
/product="transposase, fragment"
/protein_id="NP_435670.1"
/db_xref="GI:16262877"
/db_xref="GeneID:1235460"
/translation="MPAERLEMRRVREILRYRFEQGLGHKSIAVRVGAAPSTVRETLR
RAAIAELSWPLGDDVSDAVLEAALYKAAGTKTGHRRSPEPDWTQVHRELKRKHMTLQI
LWDEYISRYPEGYRYSRFCDLYRGWAMKLPVTMRQDHAAGDKLFVDYAGDTVTVVVDR
LSGKTRQAHLFVAVLGASSLSYAQARWSETLPDWIECHILALEFFGGAPALLVPDNAK
VAIIKACHFDPQVNRTYCGMAAHYGSAVLPTRPRRPRDKEQTSRCTLLDWLSVN"
misc_feature complement(428920..>429033)
/locus_tag="SMa0787"
/note="Sigma-70, region 4; Region: Sigma70_r4_2;
pfam08281"
/db_xref="CDD:203898"
misc_feature complement(order(428923..428928,428932..428940,
428944..428949,428953..428955,428983..428988,
429004..429006))
/locus_tag="SMa0787"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
misc_feature complement(428245..428967)
/locus_tag="SMa0787"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:34222"
misc_feature complement(428287..428556)
/locus_tag="SMa0787"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
repeat_region complement(428282..429227)
/standard_name="ISRm23 fragment"
/note="Sma4005; 98% identical over length to ISRm23 of S.
meliloti pSyma"
/rpt_family="ISRm23 fragment"
gene 429441..430136
/locus_tag="SMa0789"
/db_xref="GeneID:1235461"
CDS 429441..430136
/locus_tag="SMa0789"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435671.2"
/db_xref="GI:193782605"
/db_xref="GeneID:1235461"
/translation="MNDALAGNAIRVERPTKTLRELALDKVRDAIVDGYFRPGDRLVE
RDLCAQLGVSRTIVREVLRHLESEGLVANLPNKGPIVARLDLNEAKQIYEIRGALEGM
AARLCAERNDSTIVAALEASLEGIRQSYAAKDMPAVLNHTSAFYQTLFTKVDRHVAWG
VVSLLTVRINHLRSMTIKTRNRDVEGPAQMEKIVEAIRKGDGEAAYKAALDHVARASV
IAEAVLSAQQTGD"
misc_feature 429468..430124
/locus_tag="SMa0789"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:225097"
misc_feature 429492..429686
/locus_tag="SMa0789"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(429492..429494,429498..429500,429567..429569,
429570..429575,429597..429611,429615..429620,
429627..429629,429657..429662,429666..429677)
/locus_tag="SMa0789"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 429711..430085
/locus_tag="SMa0789"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:219539"
gene 430599..431201
/locus_tag="SMa0791"
/db_xref="GeneID:1235463"
CDS 430599..431201
/locus_tag="SMa0791"
/function="Miscellaneous; Hypothetical/Partial homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435673.1"
/db_xref="GI:16262880"
/db_xref="GeneID:1235463"
/translation="MPVQIRKTLLQMETTLIEGGKAAPRPLKLFSAVAVVKNPWAGHG
FVEDLRPEIHRAAPVLGELLTRMIIDAVGSAEAVEAYGKAAVVGIDGEIEHASALIHT
LRFGNHYRQAVGAKSYLAFCNTRGPANAPIMIPLMDKNDEGRRSHYLTIQTAVPDAPA
ADEIVVALGASTGGRPHHRIGDRYEDLKELGQDVTNPAGV"
misc_feature 430611..431141
/locus_tag="SMa0791"
/note="Amino acid synthesis; Region: AA_synth; pfam06684"
/db_xref="CDD:219135"
gene 431220..432053
/locus_tag="SMa0792"
/db_xref="GeneID:1235464"
CDS 431220..432053
/locus_tag="SMa0792"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; alpha/beta hydrolase fold
similarity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435674.1"
/db_xref="GI:16262881"
/db_xref="GeneID:1235464"
/translation="MQTVTSHTSGEGGASLPRKTTARGTAYFEAGNGETLILIHGVGM
RLEAWAPQIEAFAKTHRVFALDMPGHGASEKIPAGSTVRDYVAWFGCFLEDLSIARAS
IAGHSMGALISGGAVATFSDRITRVAYLNGVYRRDAAAKAAVLARAEAIRKNGVDAEG
PLERWFGEDPESQRARELTRTWLEMVDPEGYAIAYAAFAGGDEIYADCWPSVECPALF
LTGSGDPNSTPEMAKQMASVTPKGWARIVDGHRHMVNLTAPEIVNALMSEWLTSREKP
R"
misc_feature 431325..432014
/locus_tag="SMa0792"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:221720"
gene 432050..432985
/locus_tag="SMa0793"
/db_xref="GeneID:1235465"
CDS 432050..432985
/locus_tag="SMa0793"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; Flavin reductase like domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435675.2"
/db_xref="GI:193782606"
/db_xref="GeneID:1235465"
/translation="MTAEVFDPRALRDAFGAFATGVTVVTASDAAGKPIGFTANSFTS
VSLDPPLLLVCLAKSSRNYESMTSAGRFAINVLSETQKDVSNTFARPVEDRFAAVDWR
LGRDGCPIFSDVAAWFECSMQDIIEAGDHVIIIGRVTAFENSGLNGLGYARGGYFTPR
LAGKAVSAAVEGEIRLGAVLEQQGAVFLAGNETLSLPNCTVEGGDPARTLAAYLEQLT
GLNVTIGFLYSVYEDKSDGRQNIVYHALASDGAPRQGRFLRPAELAAAKFSSSATADI
INRFVLESSIGNFGIYFGDETGGTVHPIANKDAHS"
misc_feature 432092..432517
/locus_tag="SMa0793"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:214900"
gene 432982..434022
/locus_tag="SMa0794"
/db_xref="GeneID:1235466"
CDS 432982..434022
/locus_tag="SMa0794"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; bacterial luciferase
similarity"
/codon_start=1
/transl_table=11
/product="Monoxygenase"
/protein_id="NP_435676.1"
/db_xref="GI:16262883"
/db_xref="GeneID:1235466"
/translation="MKFSLFVHMERLDASQDHKTLYEEFIKLCEIADKGGMHAIWTGE
HHGMEFTIAPNPFVTIADLARRTKTARLGTGTVIAPFWHPIKLAGEAAMTDLICEGRL
DIGIARGAYSFEYERLLPGLDAWSAGQRMRELIPAVKGIWAGDYAHDGEFFKFPATTS
SPKPLQKPHPPIWVAARDPNSHEFAVANGCNVQVTPLWQDDEEVRSLMARFNDACAKD
PEVPRPKIMLLRHTYVGSDEADIAQAAHEMSVYYNYFFAWFKNERPIRQGLIDRIPEE
EIAANAMLSGEAMRRNNVVGAADEVIARIKSYEAMGYDEYSFWIDTGMTFERKKASLE
RFIADVMPAFAE"
misc_feature 432982..433917
/locus_tag="SMa0794"
/note="Flavin-utilizing monoxygenases; Region:
Flavin_utilizing_monoxygenases; cl07892"
/db_xref="CDD:244823"
misc_feature 433015..434019
/locus_tag="SMa0794"
/note="Coenzyme F420-dependent N5,N10-methylene
tetrahydromethanopterin reductase and related
flavin-dependent oxidoreductases [Energy production and
conversion]; Region: COG2141"
/db_xref="CDD:225052"
gene 434028..435491
/locus_tag="SMa0796"
/db_xref="GeneID:1235467"
CDS 434028..435491
/locus_tag="SMa0796"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435677.1"
/db_xref="GI:16262884"
/db_xref="GeneID:1235467"
/translation="MQRFQCYINGEFADGEARFESIDPTTGRAWAEMPEAREADVNRA
VEAARIALHDQPWSTLTATQRGKLLYKLADLVAENAGRLAELETRDTGKIIRETSSQI
AYVADYYRYYAGIADKIEGSYLPIDKPDMDVWLRREPIGVVAMVVPWNSQLFLSAVKI
GPALAAGCTMVVKASEDGPAPLLEFARLVHAAGFPAGVVNIVTGFGPSCGAALSRHPQ
VDHIAFTGGPETARHIVRNSAENLASTSLELGGKSPFIVFADADLESAANAQIAGIFA
ATGQSCVAGSRLIVEKSVKDRFLQILKAKAETIRIGSPLEMSTEVGPLATERQSNHVK
TLVARSLAAGAKLVTGGTAPEGAGFYYRPTILDCDGSASPSLENEFFGPVLSVLSFET
EAEALHLANDSRFGLAAGVFTQNLTRAHRLMKGIRAGIVWVNTYRAVSPVAPFGGFGL
SGHGREGGLEAALDYTRSKTVWLRTSDDPIPDPFVMR"
misc_feature 434061..435440
/locus_tag="SMa0796"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:215767"
misc_feature 434088..435446
/locus_tag="SMa0796"
/note="Uncharacterized Candidatus pelagibacter aldehyde
dehydrogenase, DhaS-like; Region: ALDH_DhaS; cd07114"
/db_xref="CDD:143432"
misc_feature order(434463..434477,434499..434501,434544..434546,
434550..434555,434697..434708,434715..434717,
434724..434729,434769..434777,434871..434873,
435162..435164,435168..435170,435246..435248,
435360..435362)
/locus_tag="SMa0796"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143432"
misc_feature order(434475..434477,434769..434771,434862..434864,
434871..434873)
/locus_tag="SMa0796"
/note="catalytic residues [active]"
/db_xref="CDD:143432"
gene 435497..435823
/locus_tag="SMa0797"
/db_xref="GeneID:1235468"
CDS 435497..435823
/locus_tag="SMa0797"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; trimmed three residues to give
better Shine- Dalgarno and initiating Met; similarity to
4-nitrophenylphosphatase domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435678.1"
/db_xref="GI:16262885"
/db_xref="GeneID:1235468"
/translation="MFYEIRTYRLRNGAIPTYLKVVEEEGIAIQRKHLGELVGYFFSE
IGPINEIVHIWAYPSLDERERRRAALMNDAAWRDFLPKVRDLIEVAENKIMKAARFSP
TGAVAS"
misc_feature 435503..435802
/locus_tag="SMa0797"
/note="NIPSNAP; Region: NIPSNAP; pfam07978"
/db_xref="CDD:191913"
gene 435861..436871
/locus_tag="SMa0799"
/db_xref="GeneID:1235469"
CDS 435861..436871
/locus_tag="SMa0799"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; similarity to bacterial
extracellular solute-binding proteins"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_435679.2"
/db_xref="GI:193782607"
/db_xref="GeneID:1235469"
/translation="MNRIFVLAATAATIATAMPATAADLVFTSWGGTTQDAQKIAWAE
KFTEKTGINVLQDGPTDYGKLKAMVEANAVTWDVVDVEGDYAAQAGKKGLLEKLDFSV
IDKSKLDPRFVTDYSVGSFYYSFVIGCNKDAVDACPKTWADLFDAQKFPGMRAFYKWS
APGVIEAALLADGVSPDKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLLASAEAPF
GSVWNGRMTALAQSGINVETSWEQNITAADALVVPKGSRNKEAAMQFIALATSPEAQA
DLAKITGYAPINLDSPKMMDPELANTLPDAQTASQVNADMNYWAENRDAIGERWYAWQ
AK"
misc_feature 435930..436862
/locus_tag="SMa0799"
/note="Spermidine/putrescine-binding periplasmic protein
[Amino acid transport and metabolism]; Region: PotD;
COG0687"
/db_xref="CDD:223759"
misc_feature 436122..436826
/locus_tag="SMa0799"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; cl17199"
/db_xref="CDD:247753"
gene 436964..437839
/locus_tag="SMa0800"
/db_xref="GeneID:1235470"
CDS 436964..437839
/locus_tag="SMa0800"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; similarity to
spermidine/putrescine ABC transporter permease (potB)"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435680.1"
/db_xref="GI:16262887"
/db_xref="GeneID:1235470"
/translation="MVSQTETGSGRPYSPAQVRRLTDFDLTLPALGLLILFFVLPVAM
LLTRSVTEPVPGLGNYAELLGSSTYLRIFANTFIVSSLVTLVSLLIGFPVAWALAIMP
SRAASIVFAILLLSMWTNLLARTYAWMVLLQRTGVINKMLLGMGLIDTPLPLVNNLTG
VTIGMTYIMLPFIILPLYGVIRKIDPAILQAAALCGANRWQSLVRVLLPLAMPGMAAG
ALMVFVMSLGYFVTPALLGGTSNMMLAELIAQFVQSLVNWGMGGAAALVLLVVTLALY
AVQLRFFGTNRIGGR"
misc_feature 437039..437746
/locus_tag="SMa0800"
/note="ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism]; Region: PotB; COG1176"
/db_xref="CDD:224097"
gene 437841..438641
/locus_tag="SMa0802"
/db_xref="GeneID:1235471"
CDS 437841..438641
/locus_tag="SMa0802"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; similarity to
spermidine/putrescine transport system permease potC"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435681.1"
/db_xref="GI:16262888"
/db_xref="GeneID:1235471"
/translation="MLLNFDRLGWWKLVLIGITLLTTAFLLLPILFIAVLSFGSSQWL
IFPPPGWTLRWYQELLEDPRWLDSAWTSFRIAIIVTVLSVLLGLVTSFGLNRGRFLFR
EALKALFLTPMILPVVVLAVALYAFFLQIGLNGTLTGFVISHLVLALPFSILSITNAL
EGFDKSIEDAAVLCGASPFEAKIRVTLPAISHGVFSAAIFSFLTSWDEVVVAIFMASP
TLQTLPVKVWSTLRQDLTPVVAAASTLLILLTVLLMVLVAIVRKGLKS"
misc_feature 437949..438551
/locus_tag="SMa0802"
/note="ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism]; Region: PotC; COG1177"
/db_xref="CDD:224098"
misc_feature 438045..438524
/locus_tag="SMa0802"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(438093..438098,438105..438110,438123..438125,
438153..438164,438168..438197,438204..438209,
438213..438215,438291..438293,438300..438305,
438309..438311,438321..438326,438333..438335,
438384..438386,438426..438431,438438..438440,
438459..438470,438477..438482,438519..438524)
/locus_tag="SMa0802"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(438171..438215,438459..438476)
/locus_tag="SMa0802"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(438213..438215,438273..438275,438477..438479,
438513..438515,438522..438524)
/locus_tag="SMa0802"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(438336..438374,438390..438395,438405..438407)
/locus_tag="SMa0802"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 438638..439717
/locus_tag="SMa0803"
/db_xref="GeneID:1235472"
CDS 438638..439717
/locus_tag="SMa0803"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; conserved hypothetical
ABC-transporter ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435682.1"
/db_xref="GI:16262889"
/db_xref="GeneID:1235472"
/translation="MNRPFLQIRGIRKEYGPVTAVQDVTLDVAQGEFLTFLGPSGSGK
STTLYILAGFENPTRGDILLNGETLLATPSHKRNIGMVFQRYTLFPHLSVGENIAFPL
KVRRLPKAEIDAKVRAMLKLVRLEGFEDRKPAQMSGGQQQRVALARALAYDPPVLLMD
EPLSALDKKLREEIQHEIRRIHQQTEVTILYVTHDQEEALRLSDRIAVFSKGVIDQIG
TGPELYANPATRFVAEFIGDSDFLPCDVVSTVNGRAEIAVCGSMTFSNIPLHGTASLG
SKAALMLRPERLLLSKTKSDIGLPVTVSDITFLGNNVHVATKTRKGNDLSVRLPFGHE
AISGLNRGDAVWLRFDAGSAHVFGQ"
misc_feature 438638..439708
/locus_tag="SMa0803"
/note="ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism];
Region: PotA; COG3842"
/db_xref="CDD:226361"
misc_feature 438653..439348
/locus_tag="SMa0803"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 438749..438772
/locus_tag="SMa0803"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(438758..438763,438767..438775,438887..438889,
439115..439120,439217..439219)
/locus_tag="SMa0803"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 438878..438889
/locus_tag="SMa0803"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 439043..439072
/locus_tag="SMa0803"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 439103..439120
/locus_tag="SMa0803"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 439127..439138
/locus_tag="SMa0803"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 439205..439225
/locus_tag="SMa0803"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
misc_feature 439478..439708
/locus_tag="SMa0803"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:219823"
gene 439799..441271
/gene="gabD4"
/locus_tag="SMa0805"
/db_xref="GeneID:1235473"
CDS 439799..441271
/gene="gabD4"
/locus_tag="SMa0805"
/EC_number="1.2.1.16"
/function="Small molecule metabolism"
/codon_start=1
/transl_table=11
/product="GabD4 succinate-semialdehyde dehdyrogenase"
/protein_id="NP_435683.1"
/db_xref="GI:16262890"
/db_xref="GeneID:1235473"
/translation="MTISETLLVKLKDPSLAVDKGLIGAEWLDRSDSGKTFDVSNPAT
GEVIAILPDMSRSETARAIDAAHAAQRAWAEKTGKERAAVLRNLYDLVVANADDLATI
LTMEMGKPLTEAKGEILYGASYVEWFGEEAKRVYGDTIPGHQPDKRIIVLKQPIGVVA
AITPWNFPNAMLARKLAPAAAAGCAVVSKPAAETPLSALALALLAERAGLPAGVFNVI
LSTDSAEVGKEMCANDKVRKLTFTGSTNVGKILMRQGADQIMKLGLELGGNAPFIVFD
DADLDAAVEGAMVAKYRNNGQTCVCANRIFVQAGIYDAFAARLTAKVSEMTIGDGFEP
DVDAGPLISEKALAKVEEHIRDAVTKGADLVLGGNARGGLFFEPTVLTGATMDMKIAG
EETFGPVAPLFKFETENEVVSMANKTEFGLASYFYSKDVSKVFRVAEALEYGMVGINT
GLISTEVAPFGGVKQSGQGREGSKYGIDDYVETKYLCLSI"
misc_feature 439808..441262
/gene="gabD4"
/locus_tag="SMa0805"
/note="succinic semialdehyde dehydrogenase; Region:
PLN02278"
/db_xref="CDD:215157"
misc_feature 439913..441262
/gene="gabD4"
/locus_tag="SMa0805"
/note="Mitochondrial succinate-semialdehyde dehydrogenase
and ALDH family members 5A1 and 5F1-like; Region:
ALDH_F5_SSADH_GabD; cd07103"
/db_xref="CDD:143421"
misc_feature order(440027..440029,440054..440056,440177..440179,
440186..440191,440195..440221,440237..440245,
440258..440260,440507..440509,440543..440545,
440555..440557,440564..440566,440735..440737,
440747..440749,440885..440887,441083..441085,
441089..441094,441104..441106,441110..441112,
441119..441121,441125..441145,441161..441163,
441170..441175,441191..441193,441206..441208,
441242..441262)
/gene="gabD4"
/locus_tag="SMa0805"
/note="tetramerization interface [polypeptide binding];
other site"
/db_xref="CDD:143421"
misc_feature order(440282..440296,440318..440320,440363..440365,
440369..440374,440519..440530,440537..440539,
440546..440551,440591..440599,440693..440695,
440978..440980,440984..440986,441062..441064,
441176..441178)
/gene="gabD4"
/locus_tag="SMa0805"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143421"
misc_feature order(440294..440296,440591..440593,440684..440686,
440693..440695)
/gene="gabD4"
/locus_tag="SMa0805"
/note="catalytic residues [active]"
/db_xref="CDD:143421"
gene 441631..442086
/gene="syrB3"
/locus_tag="SMa0806"
/db_xref="GeneID:1235474"
CDS 441631..442086
/gene="syrB3"
/locus_tag="SMa0806"
/function="Miscellaneous; Not classified regulator"
/note="trimmed 44 amino acids from glimmer prediction to
give better Shine-Dalgarno and initiating Met and better
match to SyrB"
/codon_start=1
/transl_table=11
/product="SyrB-like regulator"
/protein_id="NP_435684.1"
/db_xref="GI:16262891"
/db_xref="GeneID:1235474"
/translation="MVDESNAGPVAPAVVADAEVKAPTGKKRSSSRPQKAPPEPAQPK
MPAAKRRGYSEQERSEKLRLIETKVSEGNTLKDAIKSAGISEQTYYHWKGAAKSAARE
DIERTRPLSAGDEFAELVQLEEENQRLRKQLAEKLRTENTELRKRLGLD"
misc_feature 441778..442035
/gene="syrB3"
/locus_tag="SMa0806"
/note="Transposase; Region: HTH_Tnp_1; cl17663"
/db_xref="CDD:248217"
gene 442329..442967
/locus_tag="SMa0809"
/db_xref="GeneID:1235475"
CDS 442329..442967
/locus_tag="SMa0809"
/function="Miscellaneous; Unknown"
/note="glimmer prediction;trimmed seven residues to give
better Shine- Dalgarno and initiating Met"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435685.2"
/db_xref="GI:193782608"
/db_xref="GeneID:1235475"
/translation="MKRPQQTFVVEKKTKRRQPNAQTKSIWGDTDLKALAREVEDMAS
LPFNSNEGRGTFGSRETRLVDPINAEPLNGRVEVALPEIQRANGTKVEISQHRVADTP
TEAVAQTKERHTPSQRLSTSGTARNRTKRLHDLKVGHEGRKAQTRTVDDPISLDELAA
LGADNKLLKRLLAELLLAQNLWLKKMLERFDAERDVAPLASGRKAREPEFRG"
gene complement(443587..443793)
/gene="fixU"
/locus_tag="SMa0810"
/db_xref="GeneID:1235476"
CDS complement(443587..443793)
/gene="fixU"
/locus_tag="SMa0810"
/codon_start=1
/transl_table=11
/product="nitrogen fixation protein FixU"
/protein_id="NP_435686.1"
/db_xref="GI:16262893"
/db_xref="GeneID:1235476"
/translation="MKVTIRITGDALSAYIPKKDLEEPIISVANEDLWGGSILLRNGW
RLALPHLPQDTRLPVTVEANIRRH"
misc_feature complement(443590..443793)
/gene="fixU"
/locus_tag="SMa0810"
/note="Nitrogen fixation protein [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: NifU;
COG5554"
/db_xref="CDD:227841"
gene complement(443981..444175)
/gene="fdxN"
/locus_tag="SMa0811"
/db_xref="GeneID:1235477"
CDS complement(443981..444175)
/gene="fdxN"
/locus_tag="SMa0811"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/note="Similarity to 4Fe-4S binding domain"
/codon_start=1
/transl_table=11
/product="FdxN ferredoxin"
/protein_id="NP_435687.1"
/db_xref="GI:16262894"
/db_xref="GeneID:1235477"
/translation="MAFKIIASQCTQCGACEFECPRGAVNFKGEKYVIDPTKCNECKG
GFDTQQCASVCPVSNTCVPA"
misc_feature complement(<444107..>444172)
/gene="fdxN"
/locus_tag="SMa0811"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:246686"
gene complement(444206..445678)
/gene="nifB"
/locus_tag="SMa0814"
/db_xref="GeneID:1235478"
CDS complement(444206..445678)
/gene="nifB"
/locus_tag="SMa0814"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/note="trimmed 14 residues from glimmer prediction to give
better Shine-Dalgarno and initiating Met"
/codon_start=1
/transl_table=11
/product="NifB FeMo cofactor biosynthesis protein"
/protein_id="NP_435688.1"
/db_xref="GI:16262895"
/db_xref="GeneID:1235478"
/translation="MSTPMILRESRTSTTFSDQLLENAKSVGCSPPSTAPGDIDPGTW
DKIKNHPCFSEEAHHYFARMHVAVAPACNIQCNYCNRKYDCANESRPGVASEKLTPDQ
AVRKVIAVANEVPQLSVLGIAGPGDACYDWKKTRATFERVAREIPDIRLCISTNGLSL
PDHVDELAEMNVDHVTITINMVDPRVGVKIYPWIYYGQRRHTGIDAARILHERQMLGL
EMLAERGILTKVNSVMIPGVNDEHLIEVNKVVKGRGALLHNVMPLISNRIHGTYYGLT
GQRGPEAFELQALQDRLEGTKLMRHCRHCRADAIGLLGDDRGHEFTLAEIPDEITYDA
SKRQAYRQLVARERGDHLVAKNEANRTVMSVEYGGSLLIAVATKGGGRINEHFGHAKE
FHVYTVSQRGIKLAGRRRVEQYCLGGWGEVATLDHIVVALEGIDILLCVKIGDYPRKQ
LTQAGLRATEAYGHDYIESALGALYAAEFGIEPPVKTATA"
misc_feature complement(444248..445561)
/gene="nifB"
/locus_tag="SMa0814"
/note="nitrogenase cofactor biosynthesis protein NifB;
Region: nifB; TIGR01290"
/db_xref="CDD:233344"
misc_feature complement(<444938..445483)
/gene="nifB"
/locus_tag="SMa0814"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(444980..444982,445145..445147,
445211..445219,445298..445303,445319..445321,
445439..445447,445451..445453,445457..445459,
445463..445465))
/gene="nifB"
/locus_tag="SMa0814"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(444254..444565)
/gene="nifB"
/locus_tag="SMa0814"
/note="NifB belongs to a family of iron-molybdenum
cluster-binding proteins that includes NifX, and NifY, all
of which are involved in the synthesis of an
iron-molybdenum cofactor (FeMo-co) that binds the active
site of the dinitrogenase enzyme as part of...; Region:
NifB; cd00852"
/db_xref="CDD:238432"
gene complement(445895..447520)
/gene="nifA"
/locus_tag="SMa0815"
/db_xref="GeneID:1235479"
CDS complement(445895..447520)
/gene="nifA"
/locus_tag="SMa0815"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/note="sigma54-dependent; Activator of nif operons"
/codon_start=1
/transl_table=11
/product="Fis family transcriptional regulator"
/protein_id="NP_435689.2"
/db_xref="GI:193782609"
/db_xref="GeneID:1235479"
/translation="MRKQDKRSAEIYSISKALMAPTRLETTLNNFVNTLSLILRMRRG
GLEIPASEGETKITAATRNSGSPSAADYTVPKAAIDQVMTAGRLVVPDVCNSELFKDQ
IKWRGIGPTAFIAAAVEVDHETGGMLWFECAEESDYDYEEEVHFLSMAANLAGRAIRL
HRTISRRERTFAEEQQEQQNSRDEQSQSSARQRLLKNDGIIGESTALMTAVDTAKVMA
ETNSIVLLRGETGTGKECFAKLIHQHSTRQKKPFIKFNCPALSESLLESELFGHEKGA
FTGAIAQRVGRFESANGGTLLLDEIGEIPPAFQAKLLRVIQEGEFERVGGTKTLKVDV
RLIFATNKDLEMAVQNGEFREDLYYRISGVPLILPPLRHRDGDIPLLARAFLQRFNEE
NGRDLHFAPSALDHLSKCKFPGNVRELENCVRRTATLARSKTITSSDFACQTDQCFSS
RLWKGVHCSHGHIEIDAPAGTTPLLGAPANDVPPKEPGSAGVASNLIERDRLISALEE
AGWNQAKAARILEKTPRQVGYALRRHGVDVRKL"
misc_feature complement(445898..447508)
/gene="nifA"
/locus_tag="SMa0815"
/note="Nif-specific regulatory protein; Region: nifA;
TIGR01817"
/db_xref="CDD:233584"
misc_feature complement(447023..447454)
/gene="nifA"
/locus_tag="SMa0815"
/note="Domain present in phytochromes and cGMP-specific
phosphodiesterases; Region: GAF; smart00065"
/db_xref="CDD:214500"
misc_feature complement(446435..446866)
/gene="nifA"
/locus_tag="SMa0815"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(446816..446839)
/gene="nifA"
/locus_tag="SMa0815"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(446498..446500,446624..446626,
446813..446836))
/gene="nifA"
/locus_tag="SMa0815"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(446621..446638)
/gene="nifA"
/locus_tag="SMa0815"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(446441..446443)
/gene="nifA"
/locus_tag="SMa0815"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(445919..446032)
/gene="nifA"
/locus_tag="SMa0815"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene complement(447740..448036)
/gene="fixX"
/locus_tag="SMa0816"
/db_xref="GeneID:1235480"
CDS complement(447740..448036)
/gene="fixX"
/locus_tag="SMa0816"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/note="Possible 3Fe-4S cluster-containing protein"
/codon_start=1
/transl_table=11
/product="FixX ferredoxin-like protein"
/protein_id="NP_435690.1"
/db_xref="GI:16262897"
/db_xref="GeneID:1235480"
/translation="MKTAIAERIEDKLYQNRYLVDAGRPHITVRPHRSPSLNLLALTR
VCPAKCYELNETGQVEVTADGCMECGTCRVLCEANGDVEWSYPRGGFGVLFKFG"
misc_feature complement(447743..448015)
/gene="fixX"
/locus_tag="SMa0816"
/note="Ferredoxin-like protein [Energy production and
conversion]; Region: FixX; COG2440"
/db_xref="CDD:225289"
gene complement(448049..449356)
/gene="fixC"
/locus_tag="SMa0817"
/db_xref="GeneID:1235481"
CDS complement(448049..449356)
/gene="fixC"
/locus_tag="SMa0817"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/note="trimmed five residues from glimmer prediction to
give better Shine-Dalgarno and initiating Met; probable
electron acceptor from FixAB"
/codon_start=1
/transl_table=11
/product="oxidoreductase FixC"
/protein_id="NP_435691.1"
/db_xref="GI:16262898"
/db_xref="GeneID:1235481"
/translation="MTKEKFDAIVVGAGMSGNAAAYAMASRGLKVLQLERGEYPGSKN
VQGAIMYANMLEAIIPDFRNDAPLERHLVEQRFWIMDDTSHTGMHYRSDDFNEVTPNR
YTIIRAQFDKWLSRKVCEAGGTVLCETTATGLEWDSAGKAIGVRTDRAGDVVLADVVV
LAEGVNGLLGTRAGLREMPKSKNVALAVKELHFLPEEVIAERFGLTGDEGCVIEAGGT
ISRGMAGLGFLYTNKESISLGIGCLISNFAETMERPYALLDAFKRHPSIQPLIAGSEV
KEYAAHLIPEGGFNAIPRLCGNGWVVVGDAAQLNNAVHREGSNLAMASGRMAGEAISI
IKSRGGVMDKASLSLYKTMLDKSFVVEDLSKQKDMPSLLHTNSPNFFTTYPQLISHAA
QNFVRVDGTPKIEREIATTAAFLRARSRWGLVSDAVRLASAWR"
misc_feature complement(448055..449350)
/gene="fixC"
/locus_tag="SMa0817"
/note="Dehydrogenases (flavoproteins) [Energy production
and conversion]; Region: FixC; COG0644"
/db_xref="CDD:223717"
misc_feature complement(<449234..449329)
/gene="fixC"
/locus_tag="SMa0817"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
gene complement(449368..450429)
/gene="fixB"
/locus_tag="SMa0819"
/db_xref="GeneID:1235482"
CDS complement(449368..450429)
/gene="fixB"
/locus_tag="SMa0819"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/note="trimmed 17 residues from glimmer prediction to give
better Shine-Dalgarno and initiating Met; similarity to
electron transfer flavoprotein alpha subunits"
/codon_start=1
/transl_table=11
/product="FixB electron transfer flavoprotein alpha chain"
/protein_id="NP_435692.1"
/db_xref="GI:16262899"
/db_xref="GeneID:1235482"
/translation="MKKGLPKQFQDYRNVWVFIELEHGQVHPVSIELLGEGRKLADKL
GVHLAGVVIGPPGGQGTANAIADAFAYGADLSYLVESPLLAHYRNEPFTKALTDLVLA
NKPEILLLGATTLGRDLAGSVATTLKTGLTADCTELNVDSDGSLAATRPTFGGSLLCT
IYTLKCRPQMATVRPSVMATPQRVNRPTGSIIRHDLKMLEEEIATKVLAFFSDCDSTI
ANLAYADVVVAGGLGLGAVQNLQLLKDLARTLGGDFGCSRPLVQKGWMPFDRQIGQTG
NTIRPKLYIAAGISGAVQHRVGVEGSDLIVAINTDPNAPIFDFAHLGVVADAISFLPA
LTEVFTKRLEPRNLEKFVQ"
misc_feature complement(449404..450393)
/gene="fixB"
/locus_tag="SMa0819"
/note="Electron transfer flavoprotein, alpha subunit
[Energy production and conversion]; Region: FixB; COG2025"
/db_xref="CDD:224936"
misc_feature complement(449845..450390)
/gene="fixB"
/locus_tag="SMa0819"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_alpha; cd01715"
/db_xref="CDD:238848"
misc_feature complement(449521..>449700)
/gene="fixB"
/locus_tag="SMa0819"
/note="Electron transfer flavoprotein FAD-binding domain;
Region: ETF_alpha; pfam00766"
/db_xref="CDD:189709"
gene complement(450461..451339)
/gene="fixA"
/locus_tag="SMa0822"
/db_xref="GeneID:1235483"
CDS complement(450461..451339)
/gene="fixA"
/locus_tag="SMa0822"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/note="trimmed eight residues from glimmer prediction to
give better Shine-Dalgarno and initiating Met"
/codon_start=1
/transl_table=11
/product="FixA electron transfer flavoprotein beta chain"
/protein_id="NP_435693.1"
/db_xref="GI:16262900"
/db_xref="GeneID:1235483"
/translation="MHLVVCIKQVPDSAQIRVHPVTNTIMRQGVPTIINPHDLAALEE
ALKLCDTYGGEVTVVTMGPKMAEDALRKALTFGAHRAVLLTDRHFAGSDTLATSFALA
QAIAEIGETFGTPDVVFTGKQTIDGDTAQVGPGIAKRLDLQQLTYVAKILSIDAASRE
ITVERRAEGGSQILRTGLPCLVTMLDGADAIRRGRLDDALRAARTKVVKWSAADAGIA
EPANCGLRGSPTVVKRVFAPTSREQKARQIDTTNKPLREIADGLIAAIFADRPALKHD
LGSTGQQGAPDVDRES"
misc_feature complement(450785..451336)
/gene="fixA"
/locus_tag="SMa0822"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_beta; cd01714"
/db_xref="CDD:238847"
misc_feature complement(order(450944..450955,450968..450973,
450977..450982,451157..451159,451226..451228,
451235..451237,451319..451324))
/gene="fixA"
/locus_tag="SMa0822"
/note="Ligand binding site [chemical binding]; other site"
/db_xref="CDD:238847"
misc_feature complement(450791..451270)
/gene="fixA"
/locus_tag="SMa0822"
/note="Electron transfer flavoprotein domain; Region: ETF;
pfam01012"
/db_xref="CDD:216243"
gene 452858..453325
/locus_tag="SMa0824"
/db_xref="GeneID:1235484"
CDS 452858..453325
/locus_tag="SMa0824"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435694.1"
/db_xref="GI:16262901"
/db_xref="GeneID:1235484"
/translation="MLLDDDIVDVLKKTGVDIARRTVAKYRGAMNIHPLSKAAARSVH
CRGPPDSEGCRQPASTLEQAGPVLLERDCDISRPVFWAALFCSPAAGRHSRSQQLSIC
GRNSVVPDREEGPKRSRYPEQPVQRHRLSSGHSACRRPVTRASTHGGNSLSDF"
misc_feature <452891..452968
/locus_tag="SMa0824"
/note="Sigma-54, DNA binding domain; Region: Sigma54_DBD;
pfam04552"
/db_xref="CDD:218144"
gene 453556..454449
/gene="nifH"
/locus_tag="SMa0825"
/db_xref="GeneID:1235485"
CDS 453556..454449
/gene="nifH"
/locus_tag="SMa0825"
/EC_number="1.18.6.1"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/note="nitrogenase iron protein; nitrogenase component 2;
with component 1, an molybdenum-iron protein, catalyzes
the fixation of nitrogen to ammonia; nitrogen reductase
provides electrons to the nitrogenase complex; in R. etli
there are three essentially identical copies of nifH which
are actively expressed during symbiosis"
/codon_start=1
/transl_table=11
/product="nitrogenase reductase"
/protein_id="NP_435695.1"
/db_xref="GI:16262902"
/db_xref="GeneID:1235485"
/translation="MAALRQIAFYGKGGIGKSTTSQNTLAALVDLGQKILIVGCDPKA
DSTRLILNAKAQDTVLHLAATEGSVEDLELEDVLKVGYRGIKCVESGGPEPGVGCAGR
GVITSINFLEENGAYNDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMALY
AANNIAKGILKYAHAGGVRLGGLICNERQTDRELDLAEALAARLNSKLIHFVPRDNIV
QHAELRKMTVIQYAPNSKQAGEYRALAEKIHANSGRGTVPTPITMEELEDMLLDFGIM
KSDEQMLAELHAKEAKVIAPH"
misc_feature 453556..454440
/gene="nifH"
/locus_tag="SMa0825"
/note="nitrogenase reductase; Reviewed; Region: nifH;
PRK13234"
/db_xref="CDD:183906"
misc_feature 453565..454377
/gene="nifH"
/locus_tag="SMa0825"
/note="NifH gene encodes component II (iron protein) of
nitrogenase. Nitrogenase is responsible for the biological
nitrogen fixation, i.e. reduction of molecular nitrogen to
ammonia. NifH consists of two oxygen-sensitive
metallosulfur proteins: the...; Region: NifH; cd02040"
/db_xref="CDD:238996"
misc_feature order(453586..453588,453595..453597,453601..453609,
453676..453678,453682..453684,453688..453690,
453931..453933,453940..453945)
/gene="nifH"
/locus_tag="SMa0825"
/note="Nucleotide-binding sites [chemical binding]; other
site"
/db_xref="CDD:238996"
misc_feature 453586..453609
/gene="nifH"
/locus_tag="SMa0825"
/note="Walker A motif; other site"
/db_xref="CDD:238996"
misc_feature 453673..453693
/gene="nifH"
/locus_tag="SMa0825"
/note="Switch I region of nucleotide binding site; other
site"
/db_xref="CDD:238996"
misc_feature order(453850..453852,453952..453954)
/gene="nifH"
/locus_tag="SMa0825"
/note="Fe4S4 binding sites [ion binding]; other site"
/db_xref="CDD:238996"
misc_feature 453931..453945
/gene="nifH"
/locus_tag="SMa0825"
/note="Switch II region of nucleotide binding site; other
site"
/db_xref="CDD:238996"
gene 454549..456051
/gene="nifD"
/locus_tag="SMa0827"
/db_xref="GeneID:1235486"
CDS 454549..456051
/gene="nifD"
/locus_tag="SMa0827"
/EC_number="1.18.6.1"
/function="Small molecule metabolism; Central intermediary
metabolism; nitrogen fixation"
/codon_start=1
/transl_table=11
/product="NifD nitrogenase molybdenum-iron protein alpha
chain"
/protein_id="NP_435696.1"
/db_xref="GI:16262903"
/db_xref="GeneID:1235486"
/translation="MSLDYENDNALHEKLIEEVLSHYPDKAAKRRKKHLSVAKNKQET
AEEGQVVSECDVKSNIKSIPGVMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYS
WSQRRNYYVGTTGIDAFVTMQFTSDFQEKDIVFGGDKKLEKIIDEIEELFPLNNGVTV
QSECPIGLIGDDIEAVSRKKAEEYKTTIVPVRCEGFRGVSQSLGHHIANDAIRDWVFD
TTEVAYEAGRYDVNVIGDYNIGGDAWASRILLEEIGLHVVGNWSGDATLAEIERAPTA
KLNLIHCYRSMNYICRHMEEKYGVPWMEYNFFGPSQIEASLRQIAKHFGPEIEERAER
VIAKYSGLTDAVIDKYWPRLHGKRVMLYVGGLRPRHVITAYEDLGMEIVGTGYEFAHN
DDYQRTGHYVKEGTLIYDDVTGYELEKFIERIRPDLVGSGIKEKYSVQKMGIPFRQMH
SWDYSGPYHGYDGFAIFARDMDLAVNNPVWDLYDAPWQKVTMPAASGAAE"
misc_feature 454621..456033
/gene="nifD"
/locus_tag="SMa0827"
/note="Nitrogenase molybdenum-iron protein, alpha and beta
chains [Energy production and conversion]; Region: NifD;
COG2710"
/db_xref="CDD:225335"
misc_feature 454714..455979
/gene="nifD"
/locus_tag="SMa0827"
/note="Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe
protein, beta subunit. A group of proteins similar to the
alpha subunit of the MoFe protein of the molybdenum (Mo-)
nitrogenase. The nitrogenase enzyme catalyzes the
ATP-dependent reduction of dinitrogen to...; Region:
Nitrogenase_MoFe_alpha; cd01976"
/db_xref="CDD:238935"
misc_feature order(454729..454734,454738..454749,454756..454761,
454771..454773,454804..454806,454831..454833,
454846..454857,454861..454863,454867..454869,
454873..454878,454912..454917,454921..454923,
454927..454938,454945..454947,454966..454968,
454987..454992,454996..455004,455131..455136,
455140..455145,455266..455271,455278..455280,
455317..455322,455350..455355,455572..455574,
455788..455793,455800..455802,455845..455850,
455857..455862,455866..455871,455887..455889,
455914..455916,455932..455934,455941..455946,
455953..455955,455968..455970,455977..455979)
/gene="nifD"
/locus_tag="SMa0827"
/note="MoFe protein alpha/beta subunit interactions; other
site"
/db_xref="CDD:238935"
misc_feature order(454762..454764,454768..454770,454831..454833,
454837..454842,455038..455040,455131..455133)
/gene="nifD"
/locus_tag="SMa0827"
/note="Alpha subunit P cluster binding residues; other
site"
/db_xref="CDD:238935"
misc_feature order(454786..454788,454864..454866,455161..455163,
455257..455259,455263..455265,455395..455397,
455635..455643,455647..455649,455713..455715,
455896..455898)
/gene="nifD"
/locus_tag="SMa0827"
/note="FeMoco binding residues [chemical binding]; other
site"
/db_xref="CDD:238935"
misc_feature order(454936..454941,454945..454950,455047..455049,
455053..455064,455128..455130,455134..455136,
455155..455157)
/gene="nifD"
/locus_tag="SMa0827"
/note="MoFe protein alpha subunit/Fe protein contacts;
other site"
/db_xref="CDD:238935"
misc_feature order(455557..455562,455566..455574,455581..455586,
455590..455592,455854..455856,455863..455865,
455929..455931,455965..455970)
/gene="nifD"
/locus_tag="SMa0827"
/note="MoFe 