LOCUS NC_003112 2272360 bp DNA circular CON 10-JUN-2013
DEFINITION Neisseria meningitidis MC58 chromosome, complete genome.
ACCESSION NC_003112
VERSION NC_003112.2 GI:77358697
DBLINK Project: 57817
BioProject: PRJNA57817
KEYWORDS .
SOURCE Neisseria meningitidis MC58
ORGANISM Neisseria meningitidis MC58
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales;
Neisseriaceae; Neisseria.
REFERENCE 1 (bases 1 to 2272360)
AUTHORS Tettelin,H., Saunders,N.J., Heidelberg,J., Jeffries,A.C.,
Nelson,K.E., Eisen,J.A., Ketchum,K.A., Hood,D.W., Peden,J.F.,
Dodson,R.J., Nelson,W.C., Gwinn,M.L., DeBoy,R., Peterson,J.D.,
Hickey,E.K., Haft,D.H., Salzberg,S.L., White,O., Fleischmann,R.D.,
Dougherty,B.A., Mason,T., Ciecko,A., Parksey,D.S., Blair,E.,
Cittone,H., Clark,E.B., Cotton,M.D., Utterback,T.R., Khouri,H.,
Qin,H., Vamathevan,J., Gill,J., Scarlato,V., Masignani,V.,
Pizza,M., Grandi,G., Sun,L., Smith,H.O., Fraser,C.M., Moxon,E.R.,
Rappuoli,R. and Venter,J.C.
TITLE Complete genome sequence of Neisseria meningitidis serogroup B
strain MC58
JOURNAL Science 287 (5459), 1809-1815 (2000)
PUBMED 10710307
REFERENCE 2 (bases 1 to 2272360)
AUTHORS Tettelin,H., Saunders,N.J., Heidelberg,J., Jeffries,A.C.,
Nelson,K.E., Eisen,J.A., Ketchum,K.A., Hood,D.W., Ciecko,A.,
Peden,J.F., Dodson,R.J., Nelson,W.C., Gwinn,M.L., Peterson,J.D.,
Hickey,E.K., Haft,D.H., Salzberg,S.L., White,O., Fleischmann,R.D.,
Dougherty,B.A., Mason,T.M., Parksey,D.S., Blair,E., Cittone,H.,
Clark,E.B., Cotton,M.D., Utterback,T.R., Khouri,H.M., Qin,H.,
Vamathevan,J., Gill,J., Scarlato,V., Masignani,V., DeBoy,R.T.,
Pizza,M., Grandi,G., Sun,L., Smith,H.O., Fraser,C.M., Moxon,E.R.,
Rappuoli,R. and Venter,J.C.
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2005) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
REMARK Sequence update by submitter
REFERENCE 3 (bases 1 to 2272360)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 2272360)
AUTHORS Tettelin,H., Saunders,N.J., Heidelberg,J., Jeffries,A.C.,
Nelson,K.E., Eisen,J.A., Ketchum,K.A., Hood,D.W., Ciecko,A.,
Peden,J.F., Dodson,R.J., Nelson,W.C., Gwinn,M.L., Peterson,J.D.,
Hickey,E.K., Haft,D.H., Salzberg,S.L., White,O., Fleischmann,R.D.,
Dougherty,B.A., Mason,T.M., Parksey,D.S., Blair,E., Cittone,H.,
Clark,E.B., Cotton,M.D., Utterback,T.R., Khouri,H.M., Qin,H.,
Vamathevan,J., Gill,J., Scarlato,V., Masignani,V., DeBoy,R.T.,
Pizza,M., Grandi,G., Sun,L., Smith,H.O., Fraser,C.M., Moxon,E.R.,
Rappuoli,R. and Venter,J.C.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2000) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE002098.
On Oct 6, 2005 this sequence version replaced gi:15675948.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2272360
/organism="Neisseria meningitidis MC58"
/mol_type="genomic DNA"
/strain="MC58"
/db_xref="taxon:122586"
/serogroup="B"
gene complement(7..498)
/locus_tag="NMB0001"
/db_xref="GeneID:902103"
CDS complement(7..498)
/locus_tag="NMB0001"
/note="identified by similarity to EGAD:160712; match to
protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="NP_273067.1"
/db_xref="GI:15675949"
/db_xref="GeneID:902103"
/translation="MNSLFVDNTVFITRLKAGHIGRLVQALFEEWHGFEPWSSVDKIH
AYYGRCLKDDELPLAFAAVDDSGILLGSAAVKRHDMESFPRYEYWLGDVFVLPEYRGK
GIGRRLVAHCIGAARSLGIKFLYLYTPDVQIFYESFGWVVVGRHFHNGEWVTVMRLDV
DKV"
misc_feature complement(79..429)
/locus_tag="NMB0001"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_10; pfam13673"
/db_xref="CDD:222309"
misc_feature complement(118..321)
/locus_tag="NMB0001"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(181..186,214..222))
/locus_tag="NMB0001"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(502..897)
/locus_tag="NMB0002"
/db_xref="GeneID:902104"
CDS complement(502..897)
/locus_tag="NMB0002"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273068.1"
/db_xref="GI:15675950"
/db_xref="GeneID:902104"
/translation="MPSDVGIRLQTAFKWKLKMKKIFYFLMVVFSTSVWAGDAEDNLL
SIQSGYRALLQKQNNLDGKIIGMQSDLEDARRRLQTAQADIARLEAEIPAAMAQKARQ
AEDLRQIGVRLDHAWNAVYGAGGTKASGN"
misc_feature complement(<622..>765)
/locus_tag="NMB0002"
/note="AAA domain; Region: AAA_13; pfam13166"
/db_xref="CDD:221952"
gene complement(918..2312)
/gene="gltX"
/locus_tag="NMB0003"
/db_xref="GeneID:902105"
CDS complement(918..2312)
/gene="gltX"
/locus_tag="NMB0003"
/EC_number="6.1.1.17"
/note="Charges one glutamine molecule and pairs it to its
corresponding RNA trinucleotide during protein
translation"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="NP_273069.1"
/db_xref="GI:15675951"
/db_xref="GeneID:902105"
/translation="MTVKTRFAPSPTGYLHIGGVRTALFSWAFARHHKGEFLLRIEDT
DLARSTAESVNIILDGMKWVGLNYDNADNVVYQTRRFDRYKEVIAELLEKGHAYYCYC
SKEELEAMREKAEKEGSATYDRRWRPEVGKTLPEIPSDVQPVVRFKTPLDGVTKWTDL
VKGEISIPNEALDDLIIARADGTPTYNFCVVVDDYDMGVTHVIRGDDHVNNTPKQINI
LKAIDANLPEYGHLPMILNEQGKKISKRSGDTVAITDFGAMGILPEAMLNYLARLGWA
HGDDEFFTMEQFIEWFDLKDVSPSPSRMDLKKLYWINGEHIKITPNGKLAELVKPRLA
LRDIHETEKPALEDVLELVKDRPQDLNTLADECFYFYVKQTPAEADVQKHWDDEAAAR
MLRFAERLEGLEDWNAEAIHDLFKPFCDEEGIKMGKLGMPLRLAVCGTAKTPSVDAVL
ALIGKEEVLKRIRA"
misc_feature complement(921..2312)
/gene="gltX"
/locus_tag="NMB0003"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:234953"
misc_feature complement(<2010..2309)
/gene="gltX"
/locus_tag="NMB0003"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(order(2010..2012,2187..2189,2247..2252,
2256..2261,2283..2291,2295..2297))
/gene="gltX"
/locus_tag="NMB0003"
/note="active site"
/db_xref="CDD:173905"
misc_feature complement(2256..2267)
/gene="gltX"
/locus_tag="NMB0003"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature complement(1359..>1817)
/gene="gltX"
/locus_tag="NMB0003"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(order(1584..1589,1611..1616,1689..1694,
1698..1703,1743..1745,1755..1757))
/gene="gltX"
/locus_tag="NMB0003"
/note="active site"
/db_xref="CDD:173905"
misc_feature complement(1575..1589)
/gene="gltX"
/locus_tag="NMB0003"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene complement(2517..3161)
/locus_tag="NMB0004"
/db_xref="GeneID:902106"
CDS complement(2517..3161)
/locus_tag="NMB0004"
/note="identified by similarity to EGAD:132655; match to
protein family HMM PF02698"
/codon_start=1
/transl_table=11
/product="EpiH/GdmH-like protein"
/protein_id="NP_273070.1"
/db_xref="GI:15675952"
/db_xref="GeneID:902106"
/translation="MNKRLFCSRNGLRYYLLGGFCLSVFPLLLVFASSVWAVYRTGGQ
VLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIVFTGGRTKKGYM
TEAEVGRRYALKQGVPARNILFENTSRNTYENLNNIRPVLRANGIASVVIVSDPYHLA
RAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGRDFFN"
misc_feature complement(2523..3161)
/locus_tag="NMB0004"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1434"
/db_xref="CDD:224351"
misc_feature complement(2613..2975)
/locus_tag="NMB0004"
/note="YdcF-like. YdcF-like is a large family of mainly
bacterial proteins, with a few members found in fungi,
plants, and archaea. Escherichia coli YdcF has been shown
to bind S-adenosyl-L-methionine (AdoMet), but a
biochemical function has not been...; Region: YdcF-like;
cd06259"
/db_xref="CDD:99750"
misc_feature complement(order(2679..2681,2688..2690,2700..2702,
2760..2762,2769..2771))
/locus_tag="NMB0004"
/note="putative active site [active]"
/db_xref="CDD:99750"
gene complement(3158..3511)
/gene="arsC"
/locus_tag="NMB0005"
/db_xref="GeneID:902107"
CDS complement(3158..3511)
/gene="arsC"
/locus_tag="NMB0005"
/note="identified by similarity to EGAD:124632; match to
protein family HMM PF03960; match to protein family HMM
TIGR00014"
/codon_start=1
/transl_table=11
/product="arsenate reductase"
/protein_id="NP_273071.1"
/db_xref="GI:15675953"
/db_xref="GeneID:902107"
/translation="MPEIKIFHNPRCSKSRAALSLLEERGIAAEVVKYLDTPPDLSEL
KDIFNKLGLASARGMMRVKDDLYKELGLDNPNLDNDALLRAIADHPALLERPIVLANG
KAAVGRPLENIEAVL"
misc_feature complement(3167..3502)
/gene="arsC"
/locus_tag="NMB0005"
/note="Arsenate Reductase (ArsC) family, ArsC subfamily;
arsenic reductases similar to that encoded by arsC on the
R733 plasmid of Escherichia coli. E. coli ArsC catalyzes
the reduction of arsenate [As(V)] to arsenite [As(III)],
the first step in the...; Region: ArsC_ArsC; cd03034"
/db_xref="CDD:239332"
misc_feature complement(3167..3493)
/gene="arsC"
/locus_tag="NMB0005"
/note="ArsC family; Region: ArsC; pfam03960"
/db_xref="CDD:202832"
misc_feature complement(order(3188..3190,3227..3229,3329..3331,
3476..3478))
/gene="arsC"
/locus_tag="NMB0005"
/note="catalytic residues [active]"
/db_xref="CDD:239332"
gene 3635..4117
/locus_tag="NMB0006"
/db_xref="GeneID:902108"
CDS 3635..4117
/locus_tag="NMB0006"
/note="identified by similarity to EGAD:143277"
/codon_start=1
/transl_table=11
/product="thioredoxin-like protein"
/protein_id="NP_273072.1"
/db_xref="GI:15675954"
/db_xref="GeneID:902108"
/translation="MKYLNLAAITLAATFAAHTASADELAGWKDNTPQSLQSLKAPVR
IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW
RYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR
"
misc_feature 3722..4057
/locus_tag="NMB0006"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:239264"
misc_feature 3761..4018
/locus_tag="NMB0006"
/note="Thioredoxin-like; Region: Thioredoxin_8; pfam13905"
/db_xref="CDD:222448"
misc_feature order(3791..3793,3800..3802)
/locus_tag="NMB0006"
/note="catalytic residues [active]"
/db_xref="CDD:239264"
gene 4311..4961
/gene="ftsE"
/locus_tag="NMB0007"
/db_xref="GeneID:902109"
CDS 4311..4961
/gene="ftsE"
/locus_tag="NMB0007"
/note="identified by similarity to EGAD:140012; match to
protein family HMM PF00005; match to protein family HMM
TIGR00960"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_273073.1"
/db_xref="GI:15675955"
/db_xref="GeneID:902109"
/translation="MIRFEQVSKTYPGGFEALKNVSFQINKGEMIFIAGHSGSGKSTI
LKLISGITKPSRGKILFNGQDLGTLSDNQIGFMRQHIGIVFQDHKILYDRNVLQNVIL
PLRIIGYPPRKAEERARIAIEKVGLKGRELDDPVTLSGGEQQRLCIARAVVHQPGLLI
ADEPSANLDRAYALDIMELFKTFHEAGTTVIVAAHDETLMADYGHRILRLSKGRLA"
misc_feature 4311..4958
/gene="ftsE"
/locus_tag="NMB0007"
/note="Predicted ATPase involved in cell division [Cell
division and chromosome partitioning]; Region: FtsE;
COG2884"
/db_xref="CDD:225438"
misc_feature 4314..4955
/gene="ftsE"
/locus_tag="NMB0007"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 4413..4436
/gene="ftsE"
/locus_tag="NMB0007"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(4422..4427,4431..4439,4566..4568,4794..4799,
4893..4895)
/gene="ftsE"
/locus_tag="NMB0007"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 4557..4568
/gene="ftsE"
/locus_tag="NMB0007"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 4722..4751
/gene="ftsE"
/locus_tag="NMB0007"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 4782..4799
/gene="ftsE"
/locus_tag="NMB0007"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 4806..4817
/gene="ftsE"
/locus_tag="NMB0007"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 4881..4901
/gene="ftsE"
/locus_tag="NMB0007"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 4958..5875
/locus_tag="NMB0008"
/db_xref="GeneID:902110"
CDS 4958..5875
/locus_tag="NMB0008"
/note="identified by similarity to EGAD:140175; match to
protein family HMM PF02687; match to protein family HMM
TIGR00439"
/codon_start=1
/transl_table=11
/product="cell division protein FtsX"
/protein_id="NP_273074.1"
/db_xref="GI:15675956"
/db_xref="GeneID:902110"
/translation="MSIIHYLSLHVESARTALKQLLRQPFGTLLTLMMLAVAMTLPLF
MHLGIQSGQSVLGKLNESPQITIYMETSAAQSDSDTVRSLLARDKRLDNIRFIGKEDG
LEELQSNLDQNLISMLDGNPLPDVFIVTPDPATTPAQMQAIYRDITKLPMVESASMDT
EWVQTLYQINEFIRKILWFLSLTLGMAFVLVAHNTIRLQILSRKEEIEITKLLGAPAS
FIRRPFLYQAMWQSILSAAVSLGLCGWLLSAVRPLVDAIFKPYGLNIGWRFFYAGELG
LVFGFVIALGVFGAWLATTQHLLGFKAKK"
misc_feature 4961..5869
/locus_tag="NMB0008"
/note="putative protein insertion permease FtsX; Region:
ftsX; TIGR00439"
/db_xref="CDD:129531"
misc_feature <5141..5860
/locus_tag="NMB0008"
/note="cell division ABC transporter subunit FtsX;
Provisional; Region: ftsX; PRK11026"
/db_xref="CDD:182910"
gene 5966..6214
/locus_tag="NMB0009"
/db_xref="GeneID:902111"
CDS 5966..6214
/locus_tag="NMB0009"
/note="identified by similarity to EGAD:50503; match to
protein family HMM PF01722"
/codon_start=1
/transl_table=11
/product="BolA/YrbA family protein"
/protein_id="NP_273075.1"
/db_xref="GI:15675957"
/db_xref="GeneID:902111"
/translation="MLTSEQVKAMIEGVAKCEHIEVEGDGHHFFAVIVSSEFEGKARL
ARHRLIKDGLKAQLESNELHALSISVAATPAEWAAKAQ"
misc_feature 5969..6211
/locus_tag="NMB0009"
/note="Predicted transcriptional regulator, BolA
superfamily [Transcription]; Region: COG5007"
/db_xref="CDD:227340"
gene complement(6281..7492)
/gene="pgk"
/locus_tag="NMB0010"
/db_xref="GeneID:902112"
CDS complement(6281..7492)
/gene="pgk"
/locus_tag="NMB0010"
/EC_number="2.7.2.3"
/note="Converts 3-phospho-D-glycerate to
3-phospho-D-glyceroyl phosphate during the glycolysis
pathway"
/codon_start=1
/transl_table=11
/product="phosphoglycerate kinase"
/protein_id="NP_273076.1"
/db_xref="GI:15675958"
/db_xref="GeneID:902112"
/translation="MAFLKLTEQNVQGKTVLIRADMNVPFKDGKISDDTRIRASLASI
KYCVDNGASVIVMTHLGRPTEGEFHPEDDVAPVAAHLGSLLGKDVKVLNDWRENKPAL
NAGDVVMLQNVRINKGEKKNDLELGKAYASLCDVFVNDAFGTAHRAQASTEAVAQAAP
VACAGVLMAGELDALGKALKQPARPMVAIVAGSKVSTKLTILESLADKVDQLIVGGGI
ANTFLLAEGKAIGKSLAEHDLVEESKKIMAKMAAKGGSVPLPTDVVVAKAFAADAEAV
VKDIAADAEAVVKDIADVAEDEMILDIGPKSAAALADLLKAAGTVVWNGPVGVFEFDQ
FAGGTKALAEAIAQSKAFSIAGGGDTLAAIAKFGVTEQIGYISTGGGAFLEFLEGKEL
PAVAALEKRGA"
misc_feature complement(6293..7486)
/gene="pgk"
/locus_tag="NMB0010"
/note="phosphoglycerate kinase; Provisional; Region: pgk;
PRK00073"
/db_xref="CDD:234613"
misc_feature complement(6323..7477)
/gene="pgk"
/locus_tag="NMB0010"
/note="Phosphoglycerate kinase; Region: PGK; pfam00162"
/db_xref="CDD:215761"
misc_feature complement(order(7151..7153,7316..7318,7385..7387,
7424..7426,7430..7432))
/gene="pgk"
/locus_tag="NMB0010"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238195"
misc_feature complement(order(6359..6367,6947..6958))
/gene="pgk"
/locus_tag="NMB0010"
/note="hinge regions; other site"
/db_xref="CDD:238195"
misc_feature complement(order(6413..6421,6500..6511,6515..6517,
6521..6523,6593..6595,6842..6844))
/gene="pgk"
/locus_tag="NMB0010"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:238195"
misc_feature complement(6416..6418)
/gene="pgk"
/locus_tag="NMB0010"
/note="catalytic site [active]"
/db_xref="CDD:238195"
gene complement(7573..8826)
/gene="murA"
/locus_tag="NMB0011"
/db_xref="GeneID:902113"
CDS complement(7573..8826)
/gene="murA"
/locus_tag="NMB0011"
/EC_number="2.5.1.7"
/note="adds enolpyruvyl to UDP-N-acetylglucosamine as a
component of cell wall formation; gram-positive bacteria
have 2 copies of MurA which are active"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine
1-carboxyvinyltransferase"
/protein_id="NP_273077.1"
/db_xref="GI:15675959"
/db_xref="GeneID:902113"
/translation="MDKLKISANGPLNGEITVSGAKNAALPLMCAGLLTSGTLRLKNV
PMLADVKTTQKLLQGMGARVLTDNISEFEINGGTVNNTCAPYELVRTMRASILVLGPT
LARFGEAQVSLPGGCAIGSRPVDQHLKGLEAMGAEIVIEHGYVKAKGKLKGTRVAMDV
VTVGGTENLLMAATLAEGTTVLENCAIEPEVVDLAECLVKMGAKISGIGTSTMIVEGV
DELQGCEHSVVPDRIEAGTFLCAVAITGGRVVLRNAAPKTMEVVLDKLVEAGAVIEAG
DDWIAIDMRQRPKAVDIRTVVHPGFPTDMQAQFMALNAVAEGSCRVVETIFENRFMHV
PELNRMGANITTEGNTAFVQGVEQLSGAVVKATDLRASASLVIAGLAARGETVVEQIY
HLDRGYENIEKKLGSVGAKIERVSG"
misc_feature complement(7585..8826)
/gene="murA"
/locus_tag="NMB0011"
/note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
Region: murA; TIGR01072"
/db_xref="CDD:162190"
misc_feature complement(7603..8793)
/gene="murA"
/locus_tag="NMB0011"
/note="UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate +
UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
/db_xref="CDD:238796"
misc_feature complement(order(8134..8145,8764..8775))
/gene="murA"
/locus_tag="NMB0011"
/note="hinge; other site"
/db_xref="CDD:238796"
misc_feature complement(order(7915..7917,8335..8340,8347..8349,
8446..8463,8536..8538,8548..8550,8758..8760))
/gene="murA"
/locus_tag="NMB0011"
/note="active site"
/db_xref="CDD:238796"
gene complement(9197..9272)
/gene="tRNA-Lys-2"
/locus_tag="NMBt01"
/db_xref="GeneID:902114"
tRNA complement(9197..9272)
/gene="tRNA-Lys-2"
/locus_tag="NMBt01"
/product="tRNA-Lys"
/db_xref="GeneID:902114"
gene complement(9346..10317)
/locus_tag="NMB0012"
/db_xref="GeneID:902115"
CDS complement(9346..10317)
/locus_tag="NMB0012"
/note="identified by similarity to EGAD:30886; match to
protein family HMM PF03741"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273078.1"
/db_xref="GI:15675960"
/db_xref="GeneID:902115"
/translation="MTEYPGIGSPLFYGVFFAAVLVMIALDMFSLKKNGSHKVGVKEA
LAWSGLWVAVSCLFAGWLYFELAGNPGYGAAVAKEKVLEFFTGYILEKSLAVDNIFVF
LMIFGYFKVAPQFQHRVLLYGVLGALVLRTVMIFVGAALVQQFEWILYLFGAFLLYTG
IHMMKPEGDEKEDLANSRLLNTVKKVVPVGTEFHGEKFFTVENGKKIATPLFLVLVMI
ELSDVVFAVDSIPAVFAVTTDPFIVLTSNIFAILGLRAMYFLLADVAERFIFLKYGLA
FVLGFIGVKMLVMHWVHIPISVSLSVVFGALGASVLTSLVYTKKTGR"
misc_feature complement(9358..10293)
/locus_tag="NMB0012"
/note="integral membrane protein, TerC family; Region:
R_switched_Alx; TIGR03718"
/db_xref="CDD:234327"
gene complement(10350..10799)
/locus_tag="NMB0013"
/db_xref="GeneID:902116"
CDS complement(10350..10799)
/locus_tag="NMB0013"
/note="identified by similarity to EGAD:90450; match to
protein family HMM PF04323"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273079.1"
/db_xref="GI:15675961"
/db_xref="GeneID:902116"
/translation="MSIYAVAHIVHLYCAIAFVGGVFFEVLVLSVLHTGRVSREARRE
VEKAMSYRAVRVMPFVVGLLFASGIVMAANRYLSILGEPFATSFGTMLTLKILLAFSV
LAHFAIAVVKMARSTLTVGWSKYIHAVVFTHMLLIVFLAKAMFYISW"
misc_feature complement(10353..10796)
/locus_tag="NMB0013"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3399"
/db_xref="CDD:225934"
gene complement(10840..12111)
/gene="kdtA"
/locus_tag="NMB0014"
/db_xref="GeneID:902117"
CDS complement(10840..12111)
/gene="kdtA"
/locus_tag="NMB0014"
/note="catalyzes the transfer of
2-keto-3-deoxy-D-manno-octulosonic acid to lipid A"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="NP_273080.1"
/db_xref="GI:15675962"
/db_xref="GeneID:902117"
/translation="MFQWLYDVLWLLAPIWIRRYLDKRSGSAPAYRAHRDERFGKPYP
NPVTGAVWIHAVSVGETRAAQSLIRELRRRFPDAPLLMTQMTPTGRETAQVLFPDAQC
RYLPYDKKTWVRQFLREHRPMFGILMETEIWPNLMRECRRAGVPLFLANARLSEKSLN
GYLKVRRLIRPAAASLTGCLAQTEADAARLAKLGAASVQVCGNTKYDIIPSEQMKTLA
GQFEKRIGGRPVAVCGSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHPEHFQTVFE
TAKRFGFKVQRRSDGLPVEPDTQVWIGDSMGELYAYYLCADVAFVGGSLVDSGCQNII
EPLSCGVPTIFGFSTYNFSEACRHALASGAAVQVESADAWREAVEKTLSSEGGGMQMQ
ARVDGFIAQHRGAGARIAEAVREAVCGYRGR"
misc_feature complement(10861..12108)
/gene="kdtA"
/locus_tag="NMB0014"
/note="3-deoxy-D-manno-octulosonic-acid transferase [Cell
envelope biogenesis, outer membrane]; Region: KdtA;
COG1519"
/db_xref="CDD:224436"
misc_feature complement(11482..12021)
/gene="kdtA"
/locus_tag="NMB0014"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:218074"
misc_feature complement(10957..>11265)
/gene="kdtA"
/locus_tag="NMB0014"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:245227"
gene complement(12174..13622)
/gene="gnd"
/locus_tag="NMB0015"
/db_xref="GeneID:902118"
CDS complement(12174..13622)
/gene="gnd"
/locus_tag="NMB0015"
/EC_number="1.1.1.44"
/note="catalyzes the formation of D-ribulose 5-phosphate
from 6-phospho-D-gluconate"
/codon_start=1
/transl_table=11
/product="6-phosphogluconate dehydrogenase"
/protein_id="NP_273081.1"
/db_xref="GI:15675963"
/db_xref="GeneID:902118"
/translation="MNGDIGVIGLAVMGQNLILNMNDCGFKVVAYNRTTAKVDEFLNG
AAKGTNIIGAYSLQDLVDKLEKPRKIMMMVRAGSVVDEFIEQLLPLLEEGDILIDGGN
ANYPDTTRRTHYLAEKGILFVGAGVSGGEEGARRGPSIMPGGDKRAWDAVKPIFQAIA
AKTSQGEPCCDWVGKDGAGHFVKMVHNGIEYGDMQLICEAYQFMKDGLGLSYDEMYRV
FAEWNKTELDSYLIEITAAILGYKDEGGEPLVEKILDTAGQKGTGKWTGINALDLGIP
LTLISEAVFARCVSSFKEQRVQTGKLFARTVTPVEGGKQEWVEALRQALLASKIISYA
QGFMLIREAGESYGWDLDYGNTALLWREGCIIRSAFLSNIRDAYENNPDLVFLGADPY
FKNILENCLPAWRKVVAKAVECGIPMPCMASAITFLDGYTTERLPANLLQAQRDYFGA
HTYERTDKPRGEFFHTNWTGKGGDTASTTYDI"
misc_feature complement(12201..13622)
/gene="gnd"
/locus_tag="NMB0015"
/note="6-phosphogluconate dehydrogenase [Carbohydrate
transport and metabolism]; Region: Gnd; COG0362"
/db_xref="CDD:223439"
misc_feature complement(12762..13613)
/gene="gnd"
/locus_tag="NMB0015"
/note="6-phosphogluconate dehydrogenase-like protein;
Reviewed; Region: PRK09599"
/db_xref="CDD:236582"
misc_feature complement(12216..13088)
/gene="gnd"
/locus_tag="NMB0015"
/note="6-phosphogluconate dehydrogenase, C-terminal
domain; Region: 6PGD; pfam00393"
/db_xref="CDD:215895"
gene 13918..14154
/locus_tag="NMB0016"
/db_xref="GeneID:902119"
CDS 13918..14154
/locus_tag="NMB0016"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273082.1"
/db_xref="GI:15675964"
/db_xref="GeneID:902119"
/translation="MKNSFCGQFACCANGILLFFTEWLPMSLRTGILWRFERKVCLEL
VEMVRCRHECLISAYRQSAHPNLCISGGKNEICG"
gene complement(15221..16144)
/gene="lpxC"
/locus_tag="NMB0017"
/db_xref="GeneID:902120"
CDS complement(15221..16144)
/gene="lpxC"
/locus_tag="NMB0017"
/EC_number="3.5.1.-"
/note="zinc-dependent; catalyzes the deacetylation of
UDP-(3-O-acyl)-N-acetylglucosamine to
UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second
step of lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase"
/protein_id="NP_273083.1"
/db_xref="GI:15675965"
/db_xref="GeneID:902120"
/translation="MLQRTLAKSISVTGVGLHSGERVALTLHPAPENSGISFRRTDLD
GEMGEQIKLTPYLINDTRLSSTIVTDKGVRVGTIEHIMSALSAYGIDNALIELNAPEI
PIMDGSSLPFIYLLQDAGVVDQKAQKRFLKILKPVEIKEAGKWVRFTPYDGFKVTLTI
EFDHPVFNRSSPTFEIDFAGKSYIDEIARARTFGFMHEVEMMRAHNLGLGGNLNNAIV
IDDTDVLNPEGLRYPDEFVRHKILDAIGDLYIVGHPIVGAFEGYKSGHAINNALLRAV
LADETAYDRVEFADSDDLPDAFHELNIRTCG"
misc_feature complement(15245..16144)
/gene="lpxC"
/locus_tag="NMB0017"
/note="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; Reviewed; Region: lpxC; PRK13186"
/db_xref="CDD:237294"
misc_feature complement(15302..16144)
/gene="lpxC"
/locus_tag="NMB0017"
/note="UDP-3-O-acyl N-acetylglycosamine deacetylase;
Region: LpxC; pfam03331"
/db_xref="CDD:202596"
gene complement(17229..17741)
/gene="pilE"
/locus_tag="NMB0018"
/db_xref="GeneID:902121"
CDS complement(17229..17741)
/gene="pilE"
/locus_tag="NMB0018"
/note="identified by similarity to GP:349016; match to
protein family HMM PF00114; match to protein family HMM
PF07963; match to protein family HMM TIGR02532"
/codon_start=1
/transl_table=11
/product="pilin PilE"
/protein_id="NP_273084.1"
/db_xref="GI:15675966"
/db_xref="GeneID:902121"
/translation="MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAI
LLAEGQKSAVTEYYLNHGEWPGNNTSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSN
VNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKAANDDVTAAAAANGKKIDTKHLP
STCRDASDAS"
misc_feature complement(17250..17636)
/gene="pilE"
/locus_tag="NMB0018"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
misc_feature complement(17232..17576)
/gene="pilE"
/locus_tag="NMB0018"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
gene complement(18517..18927)
/locus_tag="NMB0019"
/db_xref="GeneID:902122"
CDS complement(18517..18927)
/locus_tag="NMB0019"
/note="identified by similarity to GP:349528; match to
protein family HMM PF00114"
/codon_start=1
/transl_table=11
/product="pilS cassette"
/protein_id="YP_338284.1"
/db_xref="GI:77358699"
/db_xref="GeneID:902122"
/translation="MAEGQKSAVTEYYLNHGEWPGNNSSAGVATSADIKGKYVKSVEV
KNGVVTAQMASSNVNNEIKGKKLSLWAKRQAGSVKWFCGLPVTRADNAKDDAVTAAAT
GTDKIDTKHLPSTCRDDSSVVCIETPPTAFYKNT"
misc_feature complement(18577..18924)
/locus_tag="NMB0019"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
misc_feature complement(18556..18897)
/locus_tag="NMB0019"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
gene complement(19267..19641)
/locus_tag="NMB0020"
/db_xref="GeneID:902123"
CDS complement(19267..19641)
/locus_tag="NMB0020"
/note="identified by similarity to EGAD:138647; match to
protein family HMM PF00114"
/codon_start=1
/transl_table=11
/product="pilS cassette"
/protein_id="YP_338285.1"
/db_xref="GI:77358700"
/db_xref="GeneID:902123"
/translation="MAEGQKSAVTEYYLNHGEWPGNNSSAGVATSANIKGKYVEKVEV
KNGVVTATMLSSGVNKEIQGKKLSLWAKRQDGSVKWFYGQPVKRDNASADAVKADTAA
NGKQIDTKHLPSTASTRKSTPN"
misc_feature complement(19399..19638)
/locus_tag="NMB0020"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
misc_feature complement(19291..19611)
/locus_tag="NMB0020"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
gene complement(19918..20292)
/locus_tag="NMB0021"
/db_xref="GeneID:902124"
CDS complement(19918..20292)
/locus_tag="NMB0021"
/note="identified by similarity to EGAD:11801"
/codon_start=1
/transl_table=11
/product="pilS cassette"
/protein_id="YP_338286.1"
/db_xref="GI:77358701"
/db_xref="GeneID:902124"
/translation="MVEGQKSAVTEYYLNHGEWPGDNSSAGVATSSEIKGKYVKSVEV
KNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKDDAVTAATGK
GTANINTKHLPSTAPTRKSTPN"
misc_feature complement(19948..20289)
/locus_tag="NMB0021"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
misc_feature complement(19945..20262)
/locus_tag="NMB0021"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
gene complement(20832..21170)
/locus_tag="NMB0022"
/db_xref="GeneID:902125"
CDS complement(20832..21170)
/locus_tag="NMB0022"
/note="identified by similarity to EGAD:40711"
/codon_start=1
/transl_table=11
/product="pilS cassette"
/protein_id="YP_338287.1"
/db_xref="GI:77358702"
/db_xref="GeneID:902125"
/translation="MTGFNDAAGVASSSTIKGKYVKEVEVKNGVVTATMLSTGVNNEI
KGKKLSLWAKRQAGSVKWFCGQPVTRADNAKDDVAAATGTDKIDTKLKKPFYPISFRT
DEAGFPLLRE"
misc_feature complement(20901..21164)
/locus_tag="NMB0022"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
misc_feature complement(20976..>21158)
/locus_tag="NMB0022"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
gene complement(21470..21877)
/locus_tag="NMB0023"
/db_xref="GeneID:902126"
CDS complement(21470..21877)
/locus_tag="NMB0023"
/note="identified by similarity to EGAD:11802; match to
protein family HMM PF00114"
/codon_start=1
/transl_table=11
/product="pilS cassette"
/protein_id="YP_338288.1"
/db_xref="GI:77358703"
/db_xref="GeneID:902126"
/translation="MAEGQKSAVTEYYLNHGEWPGNNTSAGVASSSTIKGKYVKEVTV
ANGVITATMLSSGVNKEIQGKKLSLWAKRQDGSVKWFCGQPVTRTDAKADTVAAAAKT
ADNINTKHLPSTCRDASSVVCIETPPTAFYKNT"
misc_feature complement(21530..21874)
/locus_tag="NMB0023"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
misc_feature complement(21509..21847)
/locus_tag="NMB0023"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
gene complement(21891..22487)
/locus_tag="NMB0024"
/db_xref="GeneID:902127"
CDS complement(21891..22487)
/locus_tag="NMB0024"
/note="identified by similarity to EGAD:32664"
/codon_start=1
/transl_table=11
/product="pilS cassette"
/protein_id="YP_338289.1"
/db_xref="GI:77358704"
/db_xref="GeneID:902127"
/translation="MTGFNDAAGVASSSDIKGKYVEKVEVKNGVVTATMLSSGVNKEI
KGKKLSLWAKRQNGSVKWFCGQPVTRNDTATATATDVAAANGKTDDKINTKHLPSTCR
DDSSTGCIETPRADFKHFQKISRYRVLPESRQMAEKLRHSRKSGNLVRWFQLFRINFE
TLIPSFPRKWESRTQNLKKPFYPISFRTDRPGFPPARE"
misc_feature complement(22161..22481)
/locus_tag="NMB0024"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
misc_feature complement(22182..>22475)
/locus_tag="NMB0024"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
gene complement(22825..23502)
/locus_tag="NMB0025"
/db_xref="GeneID:902128"
CDS complement(22825..23502)
/locus_tag="NMB0025"
/note="identified by similarity to EGAD:138648"
/codon_start=1
/transl_table=11
/product="large pilS cassette"
/protein_id="YP_338290.1"
/db_xref="GI:77358705"
/db_xref="GeneID:902128"
/translation="MTGFNDAAGVASSSKIKGKYVKEVTVANGVVTATMLSSGVNKEI
QGKKLSLWAKRQNGSVKWFCGQPVTRAGTDDTVAADNTGNKKTNTKHLPSTCRDAASA
VCTKTPEYYPNHGEWPKNNTSAGVASSSTIKGKYVKEVTVANGVITATMLSSGVNKEI
QGKKLSLWAKRQDGSVKWFCGQPVTRNAANAKAGTDEVTAATPDTDKINTKHLPSTAP
TRKSTPN"
misc_feature complement(23212..>23490)
/locus_tag="NMB0025"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
misc_feature complement(23191..23475)
/locus_tag="NMB0025"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
misc_feature complement(22960..23208)
/locus_tag="NMB0025"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
misc_feature complement(22852..23178)
/locus_tag="NMB0025"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
gene complement(23528..23875)
/locus_tag="NMB0026"
/db_xref="GeneID:902129"
CDS complement(23528..23875)
/locus_tag="NMB0026"
/note="identified by similarity to EGAD:13664"
/codon_start=1
/transl_table=11
/product="pilS cassette"
/protein_id="NP_273092.1"
/db_xref="GI:15677981"
/db_xref="GeneID:902129"
/translation="MASSGVNKEIKGRKLSLWAKRQAGSVKWFCGQPVERDNAKAAND
DVTAAAAANGKKIDTKHLPSTCRDAASAVCTKHPSIARITANGRKTSSFPRRRESRSV
GTETYRVKRFLRS"
misc_feature complement(23654..>23875)
/locus_tag="NMB0026"
/note="Tfp pilus assembly protein, major pilin PilA [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilA; COG4969"
/db_xref="CDD:227304"
misc_feature complement(23675..>23866)
/locus_tag="NMB0026"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:215727"
gene complement(23904..24233)
/locus_tag="NMB0027"
/db_xref="GeneID:902130"
CDS complement(23904..24233)
/locus_tag="NMB0027"
/EC_number="5.2.1.8"
/note="Suggested gene symbol is fbp (PMID:1371354).;
identified by similarity to EGAD:15191; match to protein
family HMM PF00254"
/codon_start=1
/transl_table=11
/product="peptidyl-prolyl cis-trans isomerase"
/protein_id="NP_273093.1"
/db_xref="GI:15675967"
/db_xref="GeneID:902130"
/translation="MGGLIIEDLQEGFGKEAVKGKEITVHYTGWLENGTKFDSSLDRR
QPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHGAGGVIPPHATLIFEV
ELLKVYE"
misc_feature complement(23913..>24233)
/locus_tag="NMB0027"
/note="FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones]; Region: FkpA; COG0545"
/db_xref="CDD:223619"
misc_feature complement(23919..24191)
/locus_tag="NMB0027"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; pfam00254"
/db_xref="CDD:215821"
gene complement(24311..24529)
/locus_tag="NMB0028"
/db_xref="GeneID:902131"
CDS complement(24311..24529)
/locus_tag="NMB0028"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273094.1"
/db_xref="GI:15675968"
/db_xref="GeneID:902131"
/translation="MLKTLTFAALHFSVAFSVTYVLTGSIGVSGAVALVEPLINTVVF
YFHEKAWNLYEKNKTVKQTQPFQLHRCS"
misc_feature complement(24314..24529)
/locus_tag="NMB0028"
/note="Predicted membrane protein [Function unknown];
Region: COG3205"
/db_xref="CDD:225746"
gene 24651..25604
/gene="hprA"
/locus_tag="NMB0029"
/db_xref="GeneID:902132"
CDS 24651..25604
/gene="hprA"
/locus_tag="NMB0029"
/EC_number="1.1.1.29"
/note="identified by similarity to EGAD:28541; match to
protein family HMM PF00389; match to protein family HMM
PF02826"
/codon_start=1
/transl_table=11
/product="glycerate dehydrogenase"
/protein_id="NP_273095.1"
/db_xref="GI:15675969"
/db_xref="GeneID:902132"
/translation="MNHKKIVVLDADTLPGRVFHFDFPHELAVYGTTGADETAERVRD
AHIVITNKVMISADIIAANPQLELIAVSATGVNNVDIGAAKAAGVAVCNVRAYGNESV
AEHAFMLMIALMRNLPAYQRDVAAGLWEKSPFFCHYGAPIRDLNGKTLAVFGRGNIGR
TLAGYAQAFGMGVVFAEHKHASAVREGYVSFEDAVRAADVLSLHCPLNAQTENMIGEN
ELRQMKPGAVLINCGRGGLVDENALLAALKYGQIGGAGVDVLTNEPPKNGNPLLNARL
PNLIVTPHTAWASREALDRLFDILLANIHAFVKGEAQNRVV"
misc_feature 24663..25574
/gene="hprA"
/locus_tag="NMB0029"
/note="Putative D-isomer specific 2-hydroxyacid
dehydrogenases; Region: 2-Hacid_dh_4; cd12162"
/db_xref="CDD:240639"
misc_feature 24726..25598
/gene="hprA"
/locus_tag="NMB0029"
/note="glycerate dehydrogenase; Provisional; Region:
PRK06487"
/db_xref="CDD:180588"
misc_feature order(24804..24806,24867..24875,24942..24944,25350..25352,
25500..25502)
/gene="hprA"
/locus_tag="NMB0029"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:240639"
misc_feature order(24870..24872,24942..24944,24954..24956,25110..25124,
25176..25184,25260..25268,25281..25283,25344..25352,
25422..25427,25500..25502,25506..25511)
/gene="hprA"
/locus_tag="NMB0029"
/note="putative NAD binding site [chemical binding]; other
site"
/db_xref="CDD:240639"
misc_feature order(25350..25352,25437..25439,25500..25502)
/gene="hprA"
/locus_tag="NMB0029"
/note="catalytic site [active]"
/db_xref="CDD:240639"
gene complement(25679..27736)
/gene="metG"
/locus_tag="NMB0030"
/db_xref="GeneID:902133"
CDS complement(25679..27736)
/gene="metG"
/locus_tag="NMB0030"
/EC_number="6.1.1.10"
/note="methionine--tRNA ligase; MetRS; adds methionine to
tRNA(Met) with cleavage of ATP to AMP and diphosphate;
some MetRS enzymes form dimers depending on a C-terminal
domain that is also found in other proteins such as
Trbp111 in Aquifex aeolicus and the cold-shock protein
CsaA from Bacillus subtilis while others do not; four
subfamilies exist based on sequence motifs and zinc
content"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA synthetase"
/protein_id="NP_273096.1"
/db_xref="GI:15675970"
/db_xref="GeneID:902133"
/translation="MTRKILVTSALPYANGSIHLGHMVEHIQTDVWVRFQKLRGHACH
YCCADDTHGTPVMLAAQKQGIAPEDMIAKVREEHLADFTGFFIGYDNYYSTHSPENKQ
FSQDIYRALKANGKIESRVIEQLFDPEKQMFLPDRFVKGECPKCHAQDQYGDNCEVCG
TTYSPTELINPYSAVSGTKPELRESEHFFFKLGECADFLKAWTSGNNPHDGKPHLQAE
ALNKMKEWLGEGEETTLSDWDISRDAPYFGFEIPDAPGKYFYVWLDAPVGYMASFKNL
CDRIGVDFDEYFKADSQTEMYHFIGKDILYFHALFWPAMLHFSGHRAPTGVYAHGFLT
VDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIAAKLNSKIEDIDLNLQDFISRVNSD
LVGKYVNIAARASGFIAKRFEGRLKDVADSELLAKLTAQSEAIAECYESREYAKALRD
IMALADIVNEYVDANKPWELAKQEGQDERLHEVCSELINAFTMLTAYLAPVLPQTAAN
AAKFLNLEAITWANTRDTLGKHAINKYEHLMQRVEQKQVDDLIEANKQSIAAAAAPAA
EEGKYEKVAEQASFDDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIA
ASYPNPAELNGRMVIAVANFAPRKMAKFGVSEGMILSAATADGKLKLLDVDTGAQPGD
KVG"
misc_feature complement(25685..27733)
/gene="metG"
/locus_tag="NMB0030"
/note="methionyl-tRNA synthetase; Reviewed; Region: metG;
PRK00133"
/db_xref="CDD:234655"
misc_feature complement(26621..27727)
/gene="metG"
/locus_tag="NMB0030"
/note="catalytic core domain of methioninyl-tRNA
synthetases; Region: MetRS_core; cd00814"
/db_xref="CDD:173907"
misc_feature complement(order(26813..26815,26825..26827,26930..26932,
26939..26944,26951..26953,27587..27589,27698..27700,
27704..27709))
/gene="metG"
/locus_tag="NMB0030"
/note="active site"
/db_xref="CDD:173907"
misc_feature complement(27671..27682)
/gene="metG"
/locus_tag="NMB0030"
/note="HIGH motif; other site"
/db_xref="CDD:173907"
misc_feature complement(26708..26722)
/gene="metG"
/locus_tag="NMB0030"
/note="KMSKS motif; other site"
/db_xref="CDD:173907"
misc_feature complement(26198..26593)
/gene="metG"
/locus_tag="NMB0030"
/note="Anticodon-binding domain of methionyl tRNA
synthetases; Region: Anticodon_Ia_Met; cd07957"
/db_xref="CDD:153411"
misc_feature complement(order(26333..26335,26348..26353,26357..26362,
26516..26521,26528..26533,26540..26545,26552..26557,
26564..26569,26588..26590))
/gene="metG"
/locus_tag="NMB0030"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153411"
misc_feature complement(order(26333..26335,26351..26353,26516..26521,
26528..26533,26540..26545,26552..26557,26567..26569))
/gene="metG"
/locus_tag="NMB0030"
/note="anticodon binding site; other site"
/db_xref="CDD:153411"
misc_feature complement(25682..26005)
/gene="metG"
/locus_tag="NMB0030"
/note="tRNA-binding-domain-containing Escherichia coli
methionyl-tRNA synthetase (EcMetRS)-like proteins. This
family includes EcMetRS and Aquifex aeolicus Trbp111
(AaTrbp111). This domain has general tRNA binding
properties. MetRS aminoacylates methionine...; Region:
tRNA_bind_EcMetRS_like; cd02800"
/db_xref="CDD:239199"
misc_feature complement(order(25682..25693,25703..25705,25712..25714,
25718..25720,25724..25726,25742..25753,25793..25795,
25802..25810,25859..25861,26000..26002))
/gene="metG"
/locus_tag="NMB0030"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239199"
misc_feature complement(order(25763..25765,25772..25774,25796..25798,
25808..25810,25889..25891,25925..25927))
/gene="metG"
/locus_tag="NMB0030"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:239199"
gene complement(27852..29690)
/gene="glmS"
/locus_tag="NMB0031"
/db_xref="GeneID:902134"
CDS complement(27852..29690)
/gene="glmS"
/locus_tag="NMB0031"
/EC_number="2.6.1.16"
/note="Catalyzes the first step in hexosamine metabolism,
converting fructose-6P into glucosamine-6P using glutamine
as a nitrogen source"
/codon_start=1
/transl_table=11
/product="glucosamine--fructose-6-phosphate
aminotransferase"
/protein_id="NP_273097.1"
/db_xref="GI:15675971"
/db_xref="GeneID:902134"
/translation="MCGIVGAIRAHHNVVDFLTDGLKRLEYRGYDSSGIAVNTDGKIK
RVRRVGRVQLMEDAAREKGISGGIGIGHTRWATHGGVTEPNAHPHISGGMIAVVHNGI
IENFESERKRLEGLGYRFESQTDTEVIAHSINHEYAQNGGRLFEAVQEAVKRFHGAYA
IAVIAQDKPDELVVARMGCPLLVALGDDETFIASDVSAVIAFTRRVAYLEDGDIALLA
SDGIKRLTDKNGLPAERKVKVSELSLASLELGLYSHFMQKEIHEQPRAIADTAEVFLD
GGFIPENFGKDAKSVFESIRSVKILACGTSYYAALTAKYWLESIAKIPSDVEIASEYR
YRSVIADSDQLVITISQSGETLDTMEALKYAKSLGHRHSLSICNVMESALPRESSLVL
YTRAGAEIGVASTKAFTTQLVALFGLAVTLAKVRGLVSEEDEARYTEELRQLPGSVQH
ALNLEPQIAAWAQQFAKKTSALFLGRGIHYPIALEGALKLKEITYIHAEAYPAGELKH
GPLALVDENMPVVVIAPNDSLLDKVKANMQEVGARGGELFVFADLDSNFNATEGVHVI
RAPRHVGKLSPVVHTIPVQLLAYHTALARGTDVDKPRNLAKSVTVE"
misc_feature complement(27855..29690)
/gene="glmS"
/locus_tag="NMB0031"
/note="glucosamine--fructose-6-phosphate aminotransferase;
Reviewed; Region: PRK00331"
/db_xref="CDD:234729"
misc_feature complement(29040..29687)
/gene="glmS"
/locus_tag="NMB0031"
/note="Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the N-terminus
of glucosamine-6P synthase (GlmS, or GFAT in humans). The
glutaminase domain catalyzes amide nitrogen transfer from
glutamine to the appropriate substrate. In...; Region:
GFAT; cd00714"
/db_xref="CDD:238366"
misc_feature complement(order(29313..29318,29388..29393,29430..29432,
29457..29462,29466..29471,29607..29609,29685..29687))
/gene="glmS"
/locus_tag="NMB0031"
/note="glutaminase active site [active]"
/db_xref="CDD:238366"
misc_feature complement(28422..28793)
/gene="glmS"
/locus_tag="NMB0031"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:240141"
misc_feature complement(order(28620..28622,28686..28688,28695..28697,
28707..28709,28713..28715,28734..28739,28746..28751,
28779..28784))
/gene="glmS"
/locus_tag="NMB0031"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240141"
misc_feature complement(order(28635..28643,28773..28778))
/gene="glmS"
/locus_tag="NMB0031"
/note="active site"
/db_xref="CDD:240141"
misc_feature complement(27861..28325)
/gene="glmS"
/locus_tag="NMB0031"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:240142"
misc_feature complement(order(27864..27866,27879..27884,28074..28079,
28083..28085,28095..28100,28149..28160,28164..28172,
28176..28178,28188..28190,28194..28196,28200..28202,
28206..28208,28218..28220,28260..28262))
/gene="glmS"
/locus_tag="NMB0031"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240142"
misc_feature complement(order(28215..28217,28224..28226))
/gene="glmS"
/locus_tag="NMB0031"
/note="active site"
/db_xref="CDD:240142"
gene 29966..30493
/locus_tag="NMB0032"
/db_xref="GeneID:902135"
CDS 29966..30493
/locus_tag="NMB0032"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273098.1"
/db_xref="GI:15675972"
/db_xref="GeneID:902135"
/translation="MEMKQMLLAVGVVAVLAGCGKDAGGYEGYWREKSDKKEGMIAVK
KEKGNYFLNKIHVVTGKEESLLLSEKDGALSINTGIGEIPIKLSDDGKELYVERRQYV
KTDAAMKDKIIAHQKKCGQTAQAYRDARNALPSNQTYQQHLAAIEQLKRRFEAEFDEL
EKEIKCNGRSPALLL"
gene complement(30911..32236)
/locus_tag="NMB0033"
/db_xref="GeneID:902136"
CDS complement(30911..32236)
/locus_tag="NMB0033"
/note="identified by similarity to GP:974447; match to
protein family HMM PF03562; match to protein family HMM
PF06725"
/codon_start=1
/transl_table=11
/product="membrane-bound lytic murein transglycosylase A"
/protein_id="NP_273099.1"
/db_xref="GI:15675973"
/db_xref="GeneID:902136"
/translation="MKKYLFRAALYGIAAAILAACQSKSIQTFPQPDTSVINGPDRPV
GIPDPAGTTVGGGGAVYTVVPHLSLPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCA
QAFQTPVHSFQAKQFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDDRRTAQARFPIY
GIPDDFISVPLPAGLRSGKALVRIRQTGKNSGTIDNTGGTHTADLSRFPITARTTAIK
GRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIR
IGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKSYMRQNPQRLAEVLGQNPSYIFF
RELAGSSNDGPVGALGTPLMGEYAGAVDRHYITLGAPLFVATAHPVTRKALNRLIMAQ
DTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP"
misc_feature complement(30917..32173)
/locus_tag="NMB0033"
/note="Membrane-bound lytic murein transglycosylase [Cell
envelope biogenesis, outer membrane]; Region: MltA;
COG2821"
/db_xref="CDD:225377"
misc_feature complement(31232..31807)
/locus_tag="NMB0033"
/note="MltA specific insert domain; Region: MltA;
pfam03562"
/db_xref="CDD:217616"
misc_feature complement(30944..31168)
/locus_tag="NMB0033"
/note="3D domain; Region: 3D; pfam06725"
/db_xref="CDD:219151"
gene 32447..33286
/locus_tag="NMB0034"
/db_xref="GeneID:902137"
CDS 32447..33286
/locus_tag="NMB0034"
/note="identified by similarity to EGAD:90733; match to
protein family HMM PF03239"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273100.1"
/db_xref="GI:15675974"
/db_xref="GeneID:902137"
/translation="MLVAFLIMLREGIEAALIVGIVAGFLKQSGHSKLMPKVWFGVVL
ASLMCLGLGYGIHSATGEIPQKQQEFVVGIIGLVAVAMLTYMILWMKKAARSMKRQLQ
DSVQAALNRGSGQGWALVGMAFLAVAREGLESVFFLLAVFKQSPTWQMPAGAVAGVLA
AAVIGALIYQGGMRLNLAKFFRWTGAFLIVVAAGLLAGSLRALHEAGIWNALQDIVFD
SSKYLHEDSPLGVLLGGFFGYTDHPTQGETLVWLLYLIPVITWFLCGSRPSETLTRKE
ELK"
misc_feature 32447..33283
/locus_tag="NMB0034"
/note="High-affinity Fe2+/Pb2+ permease [Inorganic ion
transport and metabolism]; Region: FTR1; COG0672"
/db_xref="CDD:223744"
gene 33283..34449
/locus_tag="NMB0035"
/db_xref="GeneID:902138"
CDS 33283..34449
/locus_tag="NMB0035"
/note="identified by similarity to EGAD:90734; match to
protein family HMM PF04302"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273101.1"
/db_xref="GI:15675975"
/db_xref="GeneID:902138"
/translation="MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGEAQTANEGGS
VSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDK
MTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
KELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFK
DGAKDAGFTGFHRIEYALWVEKDVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGG
ASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRPLIEAKNKALLEKTD
TNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK"
misc_feature 33283..34446
/locus_tag="NMB0035"
/note="inactive ferrous ion transporter periplasmic
protein EfeO; Provisional; Region: PRK10378"
/db_xref="CDD:236677"
misc_feature 33397..33666
/locus_tag="NMB0035"
/note="Cupredoxin-like domain; Region: Cupredoxin_1;
pfam13473"
/db_xref="CDD:222157"
misc_feature 33724..34425
/locus_tag="NMB0035"
/note="Imelysin; Region: Peptidase_M75; pfam09375"
/db_xref="CDD:220211"
gene 34713..35978
/locus_tag="NMB0036"
/db_xref="GeneID:902139"
CDS 34713..35978
/locus_tag="NMB0036"
/note="identified by similarity to EGAD:11971; match to
protein family HMM PF04261; match to protein family HMM
TIGR01412; match to protein family HMM TIGR01413"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273102.1"
/db_xref="GI:15675976"
/db_xref="GeneID:902139"
/translation="MSKKQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTA
ESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQ
GGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRD
FSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPG
AMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHF
VEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGDITPKDSHIRLANPR
DPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEE
YISPFGGGYFFVLPGVEKGGFLGQGLLGV"
misc_feature 34716..35972
/locus_tag="NMB0036"
/note="Tat-translocated enzyme; Region: tat_substr_1;
TIGR01412"
/db_xref="CDD:233400"
misc_feature 34839..35975
/locus_tag="NMB0036"
/note="Predicted iron-dependent peroxidase [Inorganic ion
transport and metabolism]; Region: COG2837"
/db_xref="CDD:225393"
gene complement(36050..36379)
/gene="phnA"
/locus_tag="NMB0037"
/db_xref="GeneID:902140"
CDS complement(36050..36379)
/gene="phnA"
/locus_tag="NMB0037"
/note="identified by similarity to EGAD:35919; match to
protein family HMM PF03831; match to protein family HMM
TIGR00686"
/codon_start=1
/transl_table=11
/product="phnA protein"
/protein_id="NP_273103.1"
/db_xref="GI:15675977"
/db_xref="GeneID:902140"
/translation="MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVR
DANGAVLQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLK
SEFVKKA"
misc_feature complement(36053..36379)
/gene="phnA"
/locus_tag="NMB0037"
/note="Uncharacterized Zn-ribbon-containing protein
involved in phosphonate metabolism [Inorganic ion
transport and metabolism]; Region: PhnA; COG2824"
/db_xref="CDD:225380"
misc_feature complement(36287..36376)
/gene="phnA"
/locus_tag="NMB0037"
/note="PhnA Zinc-Ribbon; Region: PhnA_Zn_Ribbon;
pfam08274"
/db_xref="CDD:219772"
misc_feature complement(36092..36253)
/gene="phnA"
/locus_tag="NMB0037"
/note="PhnA protein; Region: PhnA; pfam03831"
/db_xref="CDD:202780"
gene complement(36454..37824)
/gene="glmU"
/locus_tag="NMB0038"
/db_xref="GeneID:902141"
CDS complement(36454..37824)
/gene="glmU"
/locus_tag="NMB0038"
/EC_number="2.7.7.23"
/note="identified by similarity to EGAD:40827; match to
protein family HMM PF00132; match to protein family HMM
PF00483; match to protein family HMM TIGR01173"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine pyrophosphorylase"
/protein_id="NP_273104.1"
/db_xref="GI:15675978"
/db_xref="GeneID:902141"
/translation="MPQNTLNIVILAAGKGTRMYSKMPKVLHRIGGKPMVGRVIDTAA
ALNPQNICVVIGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLSAEGRTLVLY
GDVPLIDVETLETLLEAAGNEVGLLTDVPNDPTGLGRIIRDSNGSVTAIVEEKDADAV
QKAVKEINTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRA
SHLAAGVNNKLQLTELERIFQTEQAQELLKAGVTLRDPARFDLRGRLKHGQDVVIDVN
CIFEGDIELGDNVEIGANCVIKNAKIGANSKIAPFSHLESCEVGENNRIGPYARLRPQ
ARLADDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGCKTNFGAGTIIANYDGVHKH
KTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNVEDNKLALARARQTVIEGWVR
PEKDKQ"
misc_feature complement(36466..37809)
/gene="glmU"
/locus_tag="NMB0038"
/note="UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase; Region: glmU; TIGR01173"
/db_xref="CDD:233299"
misc_feature complement(37132..37803)
/gene="glmU"
/locus_tag="NMB0038"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature complement(order(37513..37515,37519..37521,37573..37575,
37582..37584,37663..37665,37786..37794))
/gene="glmU"
/locus_tag="NMB0038"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature complement(order(37147..37149,37513..37515))
/gene="glmU"
/locus_tag="NMB0038"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
misc_feature complement(36499..37077)
/gene="glmU"
/locus_tag="NMB0038"
/note="N-acetyl-glucosamine-1-phosphate uridyltransferase
(GlmU), C-terminal left-handed beta-helix (LbH)
acetyltransferase domain: GlmU is also known as
UDP-N-acetylglucosamine pyrophosphorylase. It is a
bifunctional bacterial enzyme that catalyzes two...;
Region: LbH_GlmU_C; cd03353"
/db_xref="CDD:100044"
misc_feature complement(order(36508..36510,36559..36564,36613..36618,
36622..36624,36652..36654,36667..36675,36688..36699,
36730..36732,36739..36741,36775..36777,36781..36783,
36829..36831))
/gene="glmU"
/locus_tag="NMB0038"
/note="active site"
/db_xref="CDD:100044"
misc_feature complement(order(36652..36654,36670..36672,36691..36699,
36730..36732,36739..36741,36775..36777,36781..36783,
36829..36831))
/gene="glmU"
/locus_tag="NMB0038"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100044"
misc_feature complement(order(36508..36510,36559..36564,36613..36618,
36667..36669,36673..36675,36688..36690))
/gene="glmU"
/locus_tag="NMB0038"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100044"
gene complement(37879..38151)
/locus_tag="NMB0039"
/db_xref="GeneID:902142"
CDS complement(37879..38151)
/locus_tag="NMB0039"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273105.1"
/db_xref="GI:15675979"
/db_xref="GeneID:902142"
/translation="MRKTFLFLTAAAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYY
QDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNR"
gene complement(38144..38857)
/locus_tag="NMB0040"
/db_xref="GeneID:902143"
CDS complement(38144..38857)
/locus_tag="NMB0040"
/note="identified by similarity to EGAD:80025; match to
protein family HMM PF00702; match to protein family HMM
TIGR01509; match to protein family HMM TIGR01549; match to
protein family HMM TIGR01993"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_273106.1"
/db_xref="GI:15675980"
/db_xref="GeneID:902143"
/translation="MQENPTVWLFDLDNTLHDADAGIFTLINRAMTRYMARRLKLSES
AASDLRQDYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTRLHGMPETQNTLSR
LKGRKAVFSNGPSFYVRAVVNALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDV
PPECCIMVDDSADNLHQAKALGMKTVRFGAKSHALPFIDASVSDMAQLARYAETLSEH
RQNHYNTPYPPKIRKKSHA"
misc_feature complement(38294..38842)
/locus_tag="NMB0040"
/note="pyrimidine 5'-nucleotidase; Region:
Pyr-5-nucltdase; TIGR01993"
/db_xref="CDD:233675"
misc_feature complement(38300..38620)
/locus_tag="NMB0040"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(38525..38527)
/locus_tag="NMB0040"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 38916..39917
/locus_tag="NMB0041"
/db_xref="GeneID:902144"
CDS 38916..39917
/locus_tag="NMB0041"
/note="identified by similarity to EGAD:159451; match to
protein family HMM PF01547; match to protein family HMM
TIGR01254"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="NP_273107.1"
/db_xref="GI:15675981"
/db_xref="GeneID:902144"
/translation="MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERA
NDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAP
VAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSP
GLGFLMANISGLGEESAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAA
SPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPELAAKLVQWLQSREV
QQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK"
misc_feature 38916..39914
/locus_tag="NMB0041"
/note="ABC-type thiamine transport system, periplasmic
component [Coenzyme metabolism]; Region: TbpA; COG4143"
/db_xref="CDD:226624"
misc_feature 38973..39896
/locus_tag="NMB0041"
/note="ABC transporter periplasmic binding protein, thiB
subfamily; Region: sfuA; TIGR01254"
/db_xref="CDD:130321"
gene 40011..40859
/locus_tag="NMB0042"
/db_xref="GeneID:902145"
CDS 40011..40859
/locus_tag="NMB0042"
/note="identified by similarity to GP:2708660; match to
protein family HMM PF00924"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273108.1"
/db_xref="GI:15675982"
/db_xref="GeneID:902145"
/translation="MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWA
AKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGG
AGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDN
EEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQN
EERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRD
IHIINS"
misc_feature 40011..40847
/locus_tag="NMB0042"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:223740"
misc_feature <40086..40205
/locus_tag="NMB0042"
/note="Conserved TM helix; Region: TM_helix; pfam05552"
/db_xref="CDD:203274"
misc_feature 40275..40820
/locus_tag="NMB0042"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 40885..41370
/locus_tag="NMB0043"
/db_xref="GeneID:902146"
CDS 40885..41370
/locus_tag="NMB0043"
/note="identified by similarity to EGAD:32599; match to
protein family HMM PF02464; match to protein family HMM
TIGR00199"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273109.1"
/db_xref="GI:15675983"
/db_xref="GeneID:902146"
/translation="MDALHTIARNLTKKRQTVSCAESCTGGMLAAAFTSVAGSSQWFD
QSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGP
GGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
V"
misc_feature 40897..41346
/locus_tag="NMB0043"
/note="Competence-damaged protein; Region: CinA;
pfam02464"
/db_xref="CDD:145546"
gene complement(41472..43040)
/gene="pilB"
/locus_tag="NMB0044"
/db_xref="GeneID:902147"
CDS complement(41472..43040)
/gene="pilB"
/locus_tag="NMB0044"
/EC_number="1.8.4.11"
/note="this is a fusion of 3 domains, an N-termianl
thioredoxin domain, and 2 domains at the C-terminus that
are methionine sulfoxide reductases, MsrA and MsrB;
methionine is modified to form methionine sulfoxide during
normal cellular processes and due to oxidat"
/codon_start=1
/transl_table=11
/product="trifunctional thioredoxin/methionine sulfoxide
reductase A/B protein"
/protein_id="NP_273110.1"
/db_xref="GI:15675984"
/db_xref="GeneID:902147"
/translation="MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTA
DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH
EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDSDVQRIVKGSI
NEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRI
DGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDP
TSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAE
EYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTE
EQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPID
AKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQ
MDAAGYGALKGKVK"
misc_feature complement(41475..43040)
/gene="pilB"
/locus_tag="NMB0044"
/note="trifunctional thioredoxin/methionine sulfoxide
reductase A/B protein; Provisional; Region: PRK14018"
/db_xref="CDD:184456"
misc_feature complement(42567..42923)
/gene="pilB"
/locus_tag="NMB0044"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:239264"
misc_feature complement(order(42828..42830,42837..42839))
/gene="pilB"
/locus_tag="NMB0044"
/note="catalytic residues [active]"
/db_xref="CDD:239264"
misc_feature complement(41964..42455)
/gene="pilB"
/locus_tag="NMB0044"
/note="Peptide methionine sulfoxide reductase
[Posttranslational modification, protein turnover,
chaperones]; Region: MsrA; COG0225"
/db_xref="CDD:223303"
misc_feature complement(41502..41909)
/gene="pilB"
/locus_tag="NMB0044"
/note="Conserved domain frequently associated with peptide
methionine sulfoxide reductase [Posttranslational
modification, protein turnover, chaperones]; Region:
COG0229"
/db_xref="CDD:223307"
gene 43186..44451
/gene="pilA"
/locus_tag="NMB0045"
/db_xref="GeneID:902148"
CDS 43186..44451
/gene="pilA"
/locus_tag="NMB0045"
/note="identified by similarity to EGAD:6624; match to
protein family HMM PF00448; match to protein family HMM
PF02881; match to protein family HMM TIGR00064"
/codon_start=1
/transl_table=11
/product="signal recognition particle protein"
/protein_id="NP_273111.1"
/db_xref="GI:15675985"
/db_xref="GeneID:902148"
/translation="MFSFFRRKKKQETPALEEAQIQETAAKAESELAQIVENIKEDAE
SLAESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVG
EAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELET
VLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPET
KEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNN
VTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKA
MPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRP
VPVRYIGVGEGIDDLRPFDARAFVDALLD"
misc_feature 43531..44448
/gene="pilA"
/locus_tag="NMB0045"
/note="signal recognition particle-docking protein FtsY;
Provisional; Region: PRK10416"
/db_xref="CDD:236686"
misc_feature 43561..43791
/gene="pilA"
/locus_tag="NMB0045"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; pfam02881"
/db_xref="CDD:217266"
misc_feature 43849..44382
/gene="pilA"
/locus_tag="NMB0045"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:239389"
misc_feature 43867..43890
/gene="pilA"
/locus_tag="NMB0045"
/note="P loop; other site"
/db_xref="CDD:239389"
misc_feature order(43957..43959,44119..44121,44302..44304,44311..44316)
/gene="pilA"
/locus_tag="NMB0045"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:239389"
gene 44458..44682
/locus_tag="NMB0046"
/db_xref="GeneID:902149"
CDS 44458..44682
/locus_tag="NMB0046"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273112.1"
/db_xref="GI:15675986"
/db_xref="GeneID:902149"
/translation="MPSENSRPMPSFPRRRESRPWDNGNIQRLSESPRFWIPTFVGMT
GCRFVGMTWCRFPYGWIRHSRAGGNLERKI"
gene 45079..45363
/locus_tag="NMB0047"
/db_xref="GeneID:902150"
CDS 45079..45363
/locus_tag="NMB0047"
/note="identified by similarity to GP:2570056; match to
protein family HMM PF01541"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273113.1"
/db_xref="GI:15675987"
/db_xref="GeneID:902150"
/translation="MQPAVYILASQRNGTLYIGVTSDLVQRIYQHREHLIEGFTSRYN
VTMLVWYELHPTMESAITREKQLKKWNRAWKLQLIEENNVSWQDLWFDII"
misc_feature 45085..45345
/locus_tag="NMB0047"
/note="GIY-YIG domain of uncharacterized hypothetical
protein found in bacteria; Region: GIY-YIG_unchar_3;
cd10448"
/db_xref="CDD:198395"
misc_feature order(45088..45096,45127..45135)
/locus_tag="NMB0047"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198395"
misc_feature order(45094..45096,45127..45129,45133..45135,45157..45159,
45169..45171,45268..45270,45325..45327)
/locus_tag="NMB0047"
/note="putative active site [active]"
/db_xref="CDD:198395"
misc_feature 45268..45270
/locus_tag="NMB0047"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:198395"
gene 47976..48119
/locus_tag="NMB0048"
/note="conserved hypothetical protein, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to EGAD:140185"
/pseudo
/db_xref="GeneID:903211"
gene 48123..51289
/gene="pilC2"
/locus_tag="NMB0049"
/note="pilC2 protein, authentic frameshift; this gene
contains a frame shift which is not the result of
sequencing error; identified by similarity to EGAD:138620"
/pseudo
/db_xref="GeneID:902151"
gene complement(53030..55180)
/locus_tag="NMB0050"
/db_xref="GeneID:902152"
CDS complement(53030..55180)
/locus_tag="NMB0050"
/note="identified by similarity to EGAD:28668; match to
protein family HMM PF05976; match to protein family HMM
TIGR01666; match to protein family HMM TIGR01667"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273115.1"
/db_xref="GI:15675988"
/db_xref="GeneID:902152"
/translation="MKTPLLKPLLITSLPVFASVFTAASIVWQLGEPKLAMPFVLGII
AGGLVDLDNRLTGRLKNIITTVALFTLSSLTAQSTLGTGLPFILAMTLMTFGFTILGA
VGLKYRTFAFGALAVATYTTLTYTPETYWLTNPFMILCGTVLYSTAILLFQIVLPHRP
VQESVANAYDALGGYLEAKADFFDPDEAAWIGNRHIDLAMSNTGVITAFNQCRSALFY
RLRGKHRHPRTAKMLRYYFAAQDIHERISSAHVDYQEMSEKFKNTDIIFRIHRLLEMQ
GQACRNTAQALRASKDYVYSKRLGRAIEGCRQSLRLLSDSNDSPDIRHLRRLLDNLGS
VDQQFRQLQHNGLQAENDRMGDTRIAALETSSLKNTWQAIRPQLNLESGVFRHAVRLS
LVVAAACTIVEALNLNLGYWILLTALFVCQPNYTATKSRVRQRIAGTVLGVIVGSLVP
YFTPSVETKLWIVIASTTLFFMTRTYKYSFSTFFITIQALTSLSLAGLDVYAAMPVRI
IDTIIGASLAWAAVSYLWPDWKYLTLERTAALAVCSNGAYLEKITERLKSGETGDDVE
YRATRRRAHEHTAALSSTLSDMSSEPAKFADSLQPGFTLLKTGYALTGYISALGAYRS
EMHEECSPDFTAQFHLAAEHTAHIFQHLPETEPDDFQTALDTLRGELDTLRTHSSGTQ
SHILLQQLQLIARQLEPYYRAYRQIPHRQPQNAA"
misc_feature complement(53141..55150)
/locus_tag="NMB0050"
/note="TIGR01666 family membrane protein; Region: YCCS"
/db_xref="CDD:130727"
misc_feature complement(54164..55000)
/locus_tag="NMB0050"
/note="FUSC-like inner membrane protein yccS; Region:
FUSC-like; pfam12805"
/db_xref="CDD:221781"
misc_feature complement(53618..53992)
/locus_tag="NMB0050"
/note="Fusaric acid resistance protein-like; Region:
FUSC_2; pfam13515"
/db_xref="CDD:222189"
gene complement(55466..56692)
/locus_tag="NMB0051"
/db_xref="GeneID:902153"
CDS complement(55466..56692)
/locus_tag="NMB0051"
/note="identified by similarity to EGAD:32627; match to
protein family HMM PF00437; match to protein family HMM
TIGR01420"
/codon_start=1
/transl_table=11
/product="twitching motility protein"
/protein_id="NP_273116.1"
/db_xref="GI:15675989"
/db_xref="GeneID:902153"
/translation="MNTDNLHDILDEMVQVYSQKKQSRSETPAEIGAHFHPLLDRLCE
TAEAQNASDILISKGFPPSLKINSALTPQPQKALTGEETAAIAASTMNAEQSEIFRRD
GEINYSVQSRSGTRYRANAYHSQGSAGLVLRRINHVIPQMQELGLPEKLKDLAVAPRG
LLIIVGPTGSGKSTTMATMLEHRNKTLPSHIVTIEDPIEFIYKPRRCIFTQREIGVDT
INWQTAVQNAMRQSPDVVCIGEVRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERI
LNFYPKEQHNQILIDIALNLTGIICQRLALKQDKTGRTAVVDLLINTPAIQDFILKGD
LMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGK
TPELLYDRVNGLNLIS"
misc_feature complement(55469..56608)
/locus_tag="NMB0051"
/note="Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PilU; COG5008"
/db_xref="CDD:227341"
misc_feature complement(55622..56218)
/locus_tag="NMB0051"
/note="RecA-like NTPases. This family includes the NTP
binding domain of F1 and V1 H+ATPases, DnaB and related
helicases as well as bacterial RecA and related eukaryotic
and archaeal recombinases. This group also includes
bacterial conjugation proteins and...; Region:
RecA-like_NTPases; cl17233"
/db_xref="CDD:247787"
misc_feature complement(order(56174..56182,56192..56197))
/locus_tag="NMB0051"
/note="Walker A motif; other site"
/db_xref="CDD:238540"
misc_feature complement(order(55973..55978,56105..56110,56114..56116,
56174..56182,56192..56194))
/locus_tag="NMB0051"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238540"
misc_feature complement(55976..55990)
/locus_tag="NMB0051"
/note="Walker B motif; other site"
/db_xref="CDD:238540"
gene complement(56855..57898)
/gene="pilT-1"
/locus_tag="NMB0052"
/db_xref="GeneID:902154"
CDS complement(56855..57898)
/gene="pilT-1"
/locus_tag="NMB0052"
/note="identified by similarity to GP:3328331; match to
protein family HMM PF00437; match to protein family HMM
TIGR01420"
/codon_start=1
/transl_table=11
/product="twitching motility protein PilT"
/protein_id="NP_273117.1"
/db_xref="GI:15675990"
/db_xref="GeneID:902154"
/translation="MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSA
EEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVARFRVNAFNIGRGPAAVFRTIPST
VLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIED
PIEFVHQSKKSLINQRELHQHTLSFANALRSALREDPDVILVGEMRDPETIGLALTAA
ETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNG
RVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSLVRQGLIAPEV
ARRRAQNSESMSF"
misc_feature complement(56864..57898)
/gene="pilT-1"
/locus_tag="NMB0052"
/note="Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion]; Region: PilT; COG2805"
/db_xref="CDD:225364"
misc_feature complement(57416..57679)
/gene="pilT-1"
/locus_tag="NMB0052"
/note="SPOC domain; Region: SPOC; pfam07744"
/db_xref="CDD:219549"
misc_feature complement(56936..57532)
/gene="pilT-1"
/locus_tag="NMB0052"
/note="Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type IV
pili, likely by pili disassembly. This retraction provides
the force required for travel of bacteria in low water
environments by a mechanism...; Region: PilT; cd01131"
/db_xref="CDD:238551"
misc_feature complement(57488..57511)
/gene="pilT-1"
/locus_tag="NMB0052"
/note="Walker A motif; other site"
/db_xref="CDD:238551"
misc_feature complement(order(57287..57289,57485..57496,57500..57502))
/gene="pilT-1"
/locus_tag="NMB0052"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238551"
misc_feature complement(57287..57304)
/gene="pilT-1"
/locus_tag="NMB0052"
/note="Walker B motif; other site"
/db_xref="CDD:238551"
gene 58018..58704
/locus_tag="NMB0053"
/db_xref="GeneID:902155"
CDS 58018..58704
/locus_tag="NMB0053"
/note="identified by similarity to EGAD:10097; match to
protein family HMM PF01168; match to protein family HMM
TIGR00044"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273118.1"
/db_xref="GI:15675991"
/db_xref="GeneID:902155"
/translation="MTVLQERYCEVSDRIGKLVLQAGREPHSVSLIAVGKTFPSDGIR
EVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVC
RLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRG
LMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVR
IGSAIFGKRG"
misc_feature 58027..58695
/locus_tag="NMB0053"
/note="Pyridoxal 5-phosphate (PLP)-binding TIM barrel
domain of Type III PLP-Dependent Enzymes, Yggs-like
proteins; Region: PLPDE_III_Yggs_like; cd06824"
/db_xref="CDD:143497"
misc_feature order(58117..58119,58123..58125,58186..58188,58255..58257,
58507..58509,58621..58623,58669..58671,58675..58680)
/locus_tag="NMB0053"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143497"
misc_feature 58123..58125
/locus_tag="NMB0053"
/note="catalytic residue [active]"
/db_xref="CDD:143497"
gene 58704..59111
/locus_tag="NMB0054"
/db_xref="GeneID:902156"
CDS 58704..59111
/locus_tag="NMB0054"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273119.1"
/db_xref="GI:15675992"
/db_xref="GeneID:902156"
/translation="MEIRAIKYTAMAALLAFTVAGCRLAGWYECSSLTGWCKPRKPAA
IDFWDIGGESPPSLGDYEIPLSDGNRSVRANEYESAQQSYFYRKIGKFEACGLDWRTR
DGKPLIETFKQGGFDCLEKQGLRRNGLSERVRW"
gene 59160..59951
/gene="proC"
/locus_tag="NMB0055"
/db_xref="GeneID:902157"
CDS 59160..59951
/gene="proC"
/locus_tag="NMB0055"
/EC_number="1.5.1.2"
/note="identified by similarity to EGAD:34246; match to
protein family HMM PF01089; match to protein family HMM
TIGR00112"
/codon_start=1
/transl_table=11
/product="pyrroline-5-carboxylate reductase"
/protein_id="NP_273120.1"
/db_xref="GI:15675993"
/db_xref="GeneID:902157"
/translation="MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL
GVETSATLPELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGG
TRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLDDEEKMHGI
TGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQ
KNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEMERQYQ"
misc_feature 59214..59930
/gene="proC"
/locus_tag="NMB0055"
/note="pyrroline-5-carboxylate reductase; Region: proC;
TIGR00112"
/db_xref="CDD:232829"
misc_feature 59235..59942
/gene="proC"
/locus_tag="NMB0055"
/note="NADP oxidoreductase coenzyme F420-dependent;
Region: F420_oxidored; cl17232"
/db_xref="CDD:247786"
gene 60098..60514
/gene="dksA"
/locus_tag="NMB0056"
/db_xref="GeneID:902158"
CDS 60098..60514
/gene="dksA"
/locus_tag="NMB0056"
/note="identified by similarity to GP:3064140; match to
protein family HMM PF01258; match to protein family HMM
TIGR02420"
/codon_start=1
/transl_table=11
/product="DnaK suppressor protein"
/protein_id="NP_273121.1"
/db_xref="GI:15675994"
/db_xref="GeneID:902158"
/translation="MAKLTEQDILNWSGPEDDYMNDDHLAFFRELLVKMQDELIENAS
ATTGHLQEHESAPDPADRATQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCA
DTGEPIGLKRLLARPTATLSVESQERRERMKKQFAD"
misc_feature 60155..60481
/gene="dksA"
/locus_tag="NMB0056"
/note="RNA polymerase-binding protein DksA; Region: dksA;
TIGR02420"
/db_xref="CDD:131473"
gene 60971..62514
/locus_tag="NMrrnaA16S"
/db_xref="GeneID:902159"
rRNA 60971..62514
/locus_tag="NMrrnaA16S"
/product="16S ribosomal RNA"
/db_xref="GeneID:902159"
gene 62614..62690
/gene="tRNA-Ile-4"
/locus_tag="NMBt02"
/db_xref="GeneID:902160"
tRNA 62614..62690
/gene="tRNA-Ile-4"
/locus_tag="NMBt02"
/product="tRNA-Ile"
/db_xref="GeneID:902160"
gene 62696..62771
/gene="tRNA-Ala-5"
/locus_tag="NMBt03"
/db_xref="GeneID:902161"
tRNA 62696..62771
/gene="tRNA-Ala-5"
/locus_tag="NMBt03"
/product="tRNA-Ala"
/db_xref="GeneID:902161"
gene 63178..66068
/locus_tag="NMrrnaA23S"
/db_xref="GeneID:902162"
rRNA 63178..66068
/locus_tag="NMrrnaA23S"
/product="23S ribosomal RNA"
/db_xref="GeneID:902162"
gene 66162..66278
/locus_tag="NMrrnaA5S"
/db_xref="GeneID:902163"
rRNA 66162..66278
/locus_tag="NMrrnaA5S"
/product="5S ribosomal RNA"
/db_xref="GeneID:902163"
gene 66354..66710
/locus_tag="NMB0057"
/db_xref="GeneID:902164"
CDS 66354..66710
/locus_tag="NMB0057"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273122.1"
/db_xref="GI:15675995"
/db_xref="GeneID:902164"
/translation="MSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFAT
LKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAVLAKLKDQASVGA
PAPKGPAKPVLPADKK"
misc_feature 66354..>66635
/locus_tag="NMB0057"
/note="DNA uptake protein and related DNA-binding proteins
[DNA replication, recombination, and repair]; Region:
ComEA; COG1555"
/db_xref="CDD:224472"
misc_feature 66564..>66623
/locus_tag="NMB0057"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cl14786"
/db_xref="CDD:246713"
gene 66739..66897
/locus_tag="NMB0058"
/db_xref="GeneID:902165"
CDS 66739..66897
/locus_tag="NMB0058"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273123.1"
/db_xref="GI:15675996"
/db_xref="GeneID:902165"
/translation="MPSEHAFGRRFYNKNTSWRLVLCLSKFLCRAYLKISDGIGLCCL
KSVFRFSL"
gene 66979..68100
/gene="dnaJ"
/locus_tag="NMB0059"
/db_xref="GeneID:902166"
CDS 66979..68100
/gene="dnaJ"
/locus_tag="NMB0059"
/note="chaperone Hsp40; co-chaperone with DnaK;
Participates actively in the response to hyperosmotic and
heat shock by preventing the aggregation of
stress-denatured proteins and by disaggregating proteins,
also in an autonomous, dnaK-independent fashion"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaJ"
/protein_id="NP_273124.1"
/db_xref="GI:15675997"
/db_xref="GeneID:902166"
/translation="MSNQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAE
EKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQ
MFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTS
PETCPTCKGSGTVHIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKTVEVN
IPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLDLHCELPISFAT
AALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIVVETPV
NLTDRQKELLEEFERISTGLENQTPRKKSFLDKLRDLFD"
misc_feature 66979..68097
/gene="dnaJ"
/locus_tag="NMB0059"
/note="chaperone protein DnaJ; Provisional; Region:
PRK10767"
/db_xref="CDD:236757"
misc_feature 66991..67155
/gene="dnaJ"
/locus_tag="NMB0059"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(67075..67083,67108..67110,67117..67122,67129..67134)
/gene="dnaJ"
/locus_tag="NMB0059"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 67330..>67413
/gene="dnaJ"
/locus_tag="NMB0059"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:243362"
misc_feature order(67342..67344,67387..67404)
/gene="dnaJ"
/locus_tag="NMB0059"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature 67417..67599
/gene="dnaJ"
/locus_tag="NMB0059"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature order(67417..67419,67426..67428,67468..67470,67477..67479,
67534..67536,67543..67545,67576..67578,67585..67587)
/gene="dnaJ"
/locus_tag="NMB0059"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature 67600..67986
/gene="dnaJ"
/locus_tag="NMB0059"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature order(67798..67803,67810..67815,67873..67884,67972..67986)
/gene="dnaJ"
/locus_tag="NMB0059"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 68296..70314
/locus_tag="NMB0060"
/db_xref="GeneID:902167"
CDS 68296..70314
/locus_tag="NMB0060"
/note="identified by similarity to EGAD:133403; match to
protein family HMM PF03169; match to protein family HMM
TIGR00728; match to protein family HMM TIGR00733"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273125.1"
/db_xref="GI:15675998"
/db_xref="GeneID:902167"
/translation="MNKSLSSSVEEYRELTLRGMILGALITVIFTASNVYLGLKVGLT
FASSIPAAVISMAVLKFFKGSNILENNMVQTQASAAGTLSTIIFVLPGLLMAGYWSGF
PFWQTTLLCIAGGILGVIFTIPLRYAMVVKSDLPYPEGVAAAEILKVGGHEEGDNRQG
GSGIKELAAGGALAGLMSFCAGGLRVIADSASYWFKSGTAIFQLPMGFSLALLGAGYL
VGLTGGIAILLGISIAWGIAVPYFSSHIPQPSDMEMAAFAMKLWKEKVRFIGAGTIGI
AAVWTLLMLLKPMVEGMKMSFKSFGGGAPAAERAEQDLSPKAMIFWVLAMMFVLGVSF
YHFIGDSHITGGMAWLLVVVCTLLASVIGFLVAAACGYMAGLVGSSSSPISGVGIVSV
VVISLVLLLVGESGGLLADEANRKFLLALTLFCGSAVICVASISNDNLQDLKTGYLLK
ATPWRQQVALIIGCIVGALVISPVLELLYEAYGFTGAMPREGMDAAQALAAPQATLMT
TIASGIFAHNLEWVYIFTGIVIGAVLIVVDLVLKKSSGGKLALPVLAVGMGIYLPPSV
NMPIVAGAVLAAVLKHIIGKKAENREGRLKNAERIGTLFSAGLIVGESLIGVIMAFII
AFSVTNGGSDAPLALNLQNWDAAASWLGLAFFVTGMFFFAQRVLKAGK"
misc_feature 68296..70209
/locus_tag="NMB0060"
/note="Predicted membrane protein [Function unknown];
Region: COG1297"
/db_xref="CDD:224216"
misc_feature 68335..70170
/locus_tag="NMB0060"
/note="putative oligopeptide transporter, OPT family;
Region: TIGR00733"
/db_xref="CDD:129816"
gene complement(69928..70930)
/gene="rfbC"
/locus_tag="NMB0061"
/note="dTDP-6-deoxy-L-lyxo-4-hexulose reductase, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to SP:P37763"
/pseudo
/db_xref="GeneID:902168"
gene complement(70969..71835)
/gene="rfbA-1"
/locus_tag="NMB0062"
/db_xref="GeneID:902169"
CDS complement(70969..71835)
/gene="rfbA-1"
/locus_tag="NMB0062"
/EC_number="2.7.7.24"
/note="identified by similarity to EGAD:23719; match to
protein family HMM PF00483; match to protein family HMM
TIGR01207"
/codon_start=1
/transl_table=11
/product="glucose-1-phosphate thymidylyltransferase"
/protein_id="NP_273126.1"
/db_xref="GI:15675999"
/db_xref="GeneID:902169"
/translation="MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLA
GIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGNDNV
CLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFNENFRAVSIEEK
PQRPKSDWAVTGLYFYDNRAVEFAKQLKPSARGELEITDLNRMYLEDGSLSVQILGRG
FAWLDTGTHESLHEAASFVQTVQNIQNLHIACLEEIAWRNGWLSDEKLEELARPMAKN
QYGQYLLRLLKK"
misc_feature complement(71116..71835)
/gene="rfbA-1"
/locus_tag="NMB0062"
/note="G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase; Region:
G1P_TT_short; cd02538"
/db_xref="CDD:133019"
misc_feature complement(70975..71832)
/gene="rfbA-1"
/locus_tag="NMB0062"
/note="glucose-1-phosphate thymidylyltransferase, short
form; Region: rmlA; TIGR01207"
/db_xref="CDD:130274"
misc_feature complement(order(71242..71244,71326..71328,71356..71361,
71404..71406,71512..71514,71578..71589,71596..71598,
71809..71814,71818..71820))
/gene="rfbA-1"
/locus_tag="NMB0062"
/note="substrate binding site; other site"
/db_xref="CDD:133019"
misc_feature complement(order(71116..71121,71128..71136,71143..71145,
71152..71157,71167..71175,71407..71412,71422..71433,
71497..71502,71656..71658,71731..71733,71740..71751,
71755..71763,71773..71778,71785..71793,71800..71802))
/gene="rfbA-1"
/locus_tag="NMB0062"
/note="tetramer interface; other site"
/db_xref="CDD:133019"
gene complement(71898..72965)
/gene="rfbB-1"
/locus_tag="NMB0063"
/db_xref="GeneID:902170"
CDS complement(71898..72965)
/gene="rfbB-1"
/locus_tag="NMB0063"
/EC_number="4.2.1.46"
/note="identified by similarity to EGAD:40672; match to
protein family HMM PF01370; match to protein family HMM
PF07993; match to protein family HMM TIGR01181"
/codon_start=1
/transl_table=11
/product="dTDP-D-glucose 4,6-dehydratase"
/protein_id="NP_273127.1"
/db_xref="GI:15676000"
/db_xref="GeneID:902170"
/translation="MRKILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESL
TEVADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNI
VGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPY
SASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYG
DGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPE
KPAGVARYEDLITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDN
KTWWQNVLNGSYRLERLGTGK"
misc_feature complement(71961..72962)
/gene="rfbB-1"
/locus_tag="NMB0063"
/note="dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs;
Region: dTDP_GD_SDR_e; cd05246"
/db_xref="CDD:187557"
misc_feature complement(71925..72959)
/gene="rfbB-1"
/locus_tag="NMB0063"
/note="dTDP-glucose 4,6 dehydratase; Provisional; Region:
PRK10084"
/db_xref="CDD:236649"
misc_feature complement(order(72396..72407,72474..72476,72486..72488,
72564..72572,72666..72668,72711..72713,72717..72725,
72786..72794,72849..72854,72858..72869,72927..72938,
72942..72944))
/gene="rfbB-1"
/locus_tag="NMB0063"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187557"
misc_feature complement(order(72063..72065,72075..72077,72084..72086,
72189..72191,72294..72296,72300..72302,72315..72323,
72354..72359,72366..72374,72399..72407,72486..72488,
72558..72566,72705..72713))
/gene="rfbB-1"
/locus_tag="NMB0063"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187557"
misc_feature complement(order(72072..72074,72432..72440,72444..72449,
72456..72461,72468..72473,72480..72482,72489..72500,
72504..72509,72513..72515,72546..72548,72627..72629,
72636..72638,72648..72650,72657..72662,72672..72674,
72681..72686,72693..72695,72699..72701))
/gene="rfbB-1"
/locus_tag="NMB0063"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187557"
misc_feature complement(order(72474..72476,72486..72488,72564..72566,
72663..72665))
/gene="rfbB-1"
/locus_tag="NMB0063"
/note="active site"
/db_xref="CDD:187557"
gene complement(73081..74100)
/gene="galE"
/locus_tag="NMB0064"
/db_xref="GeneID:902171"
CDS complement(73081..74100)
/gene="galE"
/locus_tag="NMB0064"
/EC_number="5.1.3.2"
/note="identified by similarity to EGAD:16384; match to
protein family HMM PF01370; match to protein family HMM
PF07993; match to protein family HMM TIGR01179"
/codon_start=1
/transl_table=11
/product="UDP-glucose 4-epimerase"
/protein_id="NP_273128.1"
/db_xref="GI:15676001"
/db_xref="GeneID:902171"
/translation="MKKILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPR
LKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNV
SGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERI
LTDIQKADPRWSMILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAAGKLPQLAV
FGDDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRA
FEAASGLTIPYEVKPRRAGDLACFYADPSYTKAQIGWQTQRDLTQMMEDSWRWVSNNP
NGYDD"
misc_feature complement(73090..74097)
/gene="galE"
/locus_tag="NMB0064"
/note="UDP-glucose 4-epimerase [Cell envelope biogenesis,
outer membrane]; Region: GalE; COG1087"
/db_xref="CDD:224012"
misc_feature complement(73108..74094)
/gene="galE"
/locus_tag="NMB0064"
/note="UDP-glucose 4 epimerase, subgroup 1, extended (e)
SDRs; Region: UDP_G4E_1_SDR_e; cd05247"
/db_xref="CDD:187558"
misc_feature complement(order(73558..73560,73564..73569,73639..73641,
73651..73653,73726..73734,73801..73803,73846..73848,
73852..73860,73921..73929,73990..74007,74062..74073,
74077..74079))
/gene="galE"
/locus_tag="NMB0064"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187558"
misc_feature complement(order(73609..73617,73621..73626,73633..73635,
73645..73647,73654..73656,73762..73764,73771..73776,
73780..73785,73792..73797,73804..73809,73816..73824,
73828..73830))
/gene="galE"
/locus_tag="NMB0064"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187558"
misc_feature complement(order(73639..73641,73651..73653,73726..73728,
73798..73800))
/gene="galE"
/locus_tag="NMB0064"
/note="active site"
/db_xref="CDD:187558"
misc_feature complement(order(73213..73215,73222..73224,73291..73293,
73399..73401,73405..73407,73411..73413,73444..73455,
73498..73506,73561..73569,73651..73653,73720..73728))
/gene="galE"
/locus_tag="NMB0064"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187558"
gene 74483..75409
/locus_tag="NMB0065"
/db_xref="GeneID:902172"
CDS 74483..75409
/locus_tag="NMB0065"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273129.1"
/db_xref="GI:15676002"
/db_xref="GeneID:902172"
/translation="MHQYYDAVILSVGNGLLKRFFKQNAQLNIASRPLIITLFPGVVF
GDQASILSRMGADIVLYNNKHDFRIAEEYKKQYKLSCQNILYGYPIFRHASKGCHGEK
IYFIDQVKIPFKKEERIYTLKKLIALAEKYPEKEFTILLRVADKDITVHQDKHSYIEL
AKQFQLPSNLTIERKSTAQAFQEMGYCLSYSSTMLFEAECKGIPVGVVADLGFSKSYA
NQHFLGSGVLVYFDQIDFTSPKIADPDWLDCYATKKVITTDEFNKLLKQVVPLQHDYQ
EYLSAGIRYQALANTHAIPTNSFLGIKPCSDA"
gene 75694..76428
/gene="ermC"
/locus_tag="NMB0066"
/db_xref="GeneID:902173"
CDS 75694..76428
/gene="ermC"
/locus_tag="NMB0066"
/EC_number="2.1.1.48"
/note="identified by similarity to EGAD:8424; match to
protein family HMM PF00398"
/codon_start=1
/transl_table=11
/product="rRNA adenine N-6-methyltransferase"
/protein_id="NP_273130.1"
/db_xref="GI:15676003"
/db_xref="GeneID:902173"
/translation="MNEKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHF
TLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNI
PYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALFLMAEVDISILSMVPR
EYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKH
AGIDDLNNISFEQFLSLFNSYKLFNK"
misc_feature 75697..76425
/gene="ermC"
/locus_tag="NMB0066"
/note="Ribosomal RNA adenine dimethylase; Region: RrnaAD;
pfam00398"
/db_xref="CDD:215900"
misc_feature 75790..76038
/gene="ermC"
/locus_tag="NMB0066"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(75802..75822,75868..75873,75940..75948,75994..75996)
/gene="ermC"
/locus_tag="NMB0066"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(76613..77290)
/locus_tag="NMB0067"
/db_xref="GeneID:903210"
CDS complement(76613..77290)
/locus_tag="NMB0067"
/note="identified by similarity to GP:530041"
/codon_start=1
/transl_table=11
/product="polysialic acid capsule biosynthesis protein
SiaD"
/protein_id="NP_273131.1"
/db_xref="GI:15677983"
/db_xref="GeneID:903210"
/translation="MLKKIKKALFQPKKFFQDSMWLTTSPFYLTPPRNNLFVISNLGQ
LNQVQSLIKIQKLTNNLLVILYTSKNLKMPKLVHQSANKNLFESIYLFELPRSPNNIT
PKKLLYIYRSYKKILNIIQPAHLYMLSFTGHYSYLISIAKKKNITTHLIDEGTGTYAP
LLESFSYHPTKLERYLIGNNLNIKGYIDHFDILHVPFPEYAKKIFNAKKYNRFFAWRK
GDVLQGD"
misc_feature complement(<76646..77290)
/locus_tag="NMB0067"
/note="Alpha-2,8-polysialyltransferase (POLYST); Region:
A-2_8-polyST; pfam07388"
/db_xref="CDD:219396"
gene complement(77374..78423)
/gene="siaC"
/locus_tag="NMB0068"
/db_xref="GeneID:902174"
CDS complement(77374..78423)
/gene="siaC"
/locus_tag="NMB0068"
/note="identified by similarity to EGAD:19609; match to
protein family HMM PF01354; match to protein family HMM
PF03102"
/codon_start=1
/transl_table=11
/product="polysialic acid capsule biosynthesis protein
SiaC"
/protein_id="NP_273132.1"
/db_xref="GI:15676004"
/db_xref="GeneID:902174"
/translation="MQNNNEFKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAA
YNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVES
KGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSI
ESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLD
NYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGGKKD
TIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGDFSVNEYETLFGKVAA
CNIRKGAQIKKTDIE"
misc_feature complement(77377..78408)
/gene="siaC"
/locus_tag="NMB0068"
/note="Sialic acid synthase [Cell envelope biogenesis,
outer membrane]; Region: SpsE; COG2089"
/db_xref="CDD:225000"
misc_feature complement(77599..78303)
/gene="siaC"
/locus_tag="NMB0068"
/note="NeuB family; Region: NeuB; pfam03102"
/db_xref="CDD:217370"
misc_feature complement(77380..77550)
/gene="siaC"
/locus_tag="NMB0068"
/note="C-terminal SAF domain of sialic acid synthetase;
Region: SAF_NeuB_like; cd11615"
/db_xref="CDD:212160"
misc_feature complement(order(77455..77463,77482..77490,77536..77538))
/gene="siaC"
/locus_tag="NMB0068"
/note="NeuB binding interface [polypeptide binding]; other
site"
/db_xref="CDD:212160"
misc_feature complement(77482..77484)
/gene="siaC"
/locus_tag="NMB0068"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:212160"
gene complement(78424..79110)
/gene="siaB"
/locus_tag="NMB0069"
/db_xref="GeneID:902175"
CDS complement(78424..79110)
/gene="siaB"
/locus_tag="NMB0069"
/EC_number="2.7.7.43"
/note="identified by similarity to EGAD:14454; match to
protein family HMM PF02348"
/codon_start=1
/transl_table=11
/product="polysialic acid capsule biosynthesis protein
SiaB"
/protein_id="NP_273133.1"
/db_xref="GI:15676005"
/db_xref="GeneID:902175"
/translation="MEKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKC
FDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTL
LQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSD
LEQPRQQLPQAFRPNGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQ
AENILNHKES"
misc_feature complement(78442..79098)
/gene="siaB"
/locus_tag="NMB0069"
/note="CMP-NeuAc_Synthase activates N-acetylneuraminic
acid by adding CMP moiety; Region: CMP-NeuAc_Synthase;
cd02513"
/db_xref="CDD:133006"
misc_feature complement(order(78478..78480,78574..78576,78589..78591,
78793..78795,78799..78801,78865..78867,78886..78888,
78898..78900,79045..79047,79063..79065,79075..79083))
/gene="siaB"
/locus_tag="NMB0069"
/note="ligand binding site; other site"
/db_xref="CDD:133006"
misc_feature complement(order(78445..78450,78457..78459,78466..78471,
78478..78480,78514..78516,78520..78522,78574..78576,
78589..78600,78703..78708,78718..78720,79027..79032,
79036..79038))
/gene="siaB"
/locus_tag="NMB0069"
/note="tetramer interface; other site"
/db_xref="CDD:133006"
gene complement(79114..80247)
/gene="synX"
/locus_tag="NMB0070"
/db_xref="GeneID:902176"
CDS complement(79114..80247)
/gene="synX"
/locus_tag="NMB0070"
/note="identified by similarity to GP:460145; match to
protein family HMM PF02350"
/codon_start=1
/transl_table=11
/product="polysialic acid capsule biosynthesis protein
SynX"
/protein_id="NP_273134.1"
/db_xref="GI:15676006"
/db_xref="GeneID:902176"
/translation="MKRILCITGTRADFGKLKPLLAYIENHPDLELHLIVTGMHMMKT
YGRTYKEVTRENYQHTYLFSNQIQGEPMGAVLGNTITFISRLSDEIEPDMVMIHGDRL
EALAGAAVGALSSRLVCHIEGGELSGTVDDSIRHSISKLSHIHLVANEQAVTRLVQMG
EKRKHIHIIGSPDLDVMASSTLPSLEEVKEYYGLPYENYGISMFHPVTTEAHLMPQYA
AQYFKALELSGQNIISIYPNNDTGTESILQELLKYQSDKFIAFPSIRFEYFLVLLKHA
KFMVGNSSAGIREAPLYGVPSIDVGTRQSNRHMGKSIIHTDYETKNIFDAIQQACSLG
KFEADDTFNGGDTRTSTERFAEVINNPETWNVSAQKRFIDLNL"
misc_feature complement(79174..80244)
/gene="synX"
/locus_tag="NMB0070"
/note="UDP-N-acetyl-D-glucosamine 2-epimerase,
UDP-hydrolysing; Region: NeuC_NnaA; TIGR03568"
/db_xref="CDD:234263"
misc_feature complement(79174..80241)
/gene="synX"
/locus_tag="NMB0070"
/note="Bacterial members of the UDP-N-Acetylglucosamine
(GlcNAc) 2-Epimerase family are known to catalyze the
reversible interconversion of UDP-GlcNAc and
UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to
produce an activated form of ManNAc residues; Region:
GT1_UDP-GlcNAc_2-Epimerase; cd03786"
/db_xref="CDD:99962"
misc_feature complement(order(79390..79392,79441..79443,79447..79449,
79453..79455,80215..80217))
/gene="synX"
/locus_tag="NMB0070"
/note="active site"
/db_xref="CDD:99962"
misc_feature complement(order(79774..79776,79843..79845,79855..79857,
79897..79899,79903..79905,79909..79914,79996..79998,
80017..80022,80026..80028))
/gene="synX"
/locus_tag="NMB0070"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99962"
gene 80382..81557
/gene="ctrA"
/locus_tag="NMB0071"
/db_xref="GeneID:902177"
CDS 80382..81557
/gene="ctrA"
/locus_tag="NMB0071"
/note="identified by similarity to EGAD:23947; match to
protein family HMM PF02563"
/codon_start=1
/transl_table=11
/product="capsule polysaccharide export outer membrane
protein"
/protein_id="NP_273135.1"
/db_xref="GI:15676007"
/db_xref="GeneID:902177"
/translation="MFKVKFYIRHAVLLLCGSLIVGCSAIPSSGPSAKKIVSLGQQSE
VQIPEVELIDVNHTVAQLLYKAQINQSFTQFGDGYASAGTLNIGDVLDIMIWEAPPAV
LFGGGLSSMGSGSAHQTKLPEQLVTARGTVSVPFVGDISVVGKTPGQVQEIIKGRLKK
MANQPQVMVRLVQNNAANVSVIRAGNSVRMPLTAAGERVLDAVAAVGGSTANVQDTNV
QLTRGNVVRTVALEDLVANPRQNILLRRGDVVTMITNPYTFTSMGAVGRTQEIGFSAR
GLSLSEAIGRMGGLQDRRSDARGVFVFRYTPLVELPAERQDKWIAQGYGSEAEIPTVY
RVNMADAHSLFSMQRFPVKNKDVLYVSNAPLAEVQKFLSFVFSPVTSGANSINNLTN"
misc_feature 80499..81245
/gene="ctrA"
/locus_tag="NMB0071"
/note="Periplasmic protein involved in polysaccharide
export, contains SLBB domain of b-grasp fold [Cell
wall/membrane/envelope biogenesis]; Region: Wza; COG1596"
/db_xref="CDD:224512"
misc_feature 80631..80900
/gene="ctrA"
/locus_tag="NMB0071"
/note="Polysaccharide biosynthesis/export protein; Region:
Poly_export; pfam02563"
/db_xref="CDD:202285"
gene 81572..82735
/gene="ctrB"
/locus_tag="NMB0072"
/db_xref="GeneID:902178"
CDS 81572..82735
/gene="ctrB"
/locus_tag="NMB0072"
/note="identified by similarity to EGAD:20633; match to
protein family HMM PF02706; match to protein family HMM
TIGR01010"
/codon_start=1
/transl_table=11
/product="capsule polysaccharide export inner-membrane
protein"
/protein_id="NP_273136.1"
/db_xref="GI:15676008"
/db_xref="GeneID:902178"
/translation="MSEQLPVAVATETKAERKKPKKKSWIKKLSPLFWVTVIIPTVIS
LVYFGFFASDRFTSQSSFVVRSPKSQSSLNGLGAILQGTGFARAQDDIYTVGEYMRSR
SSLDELRKILPVREFYETKGDAFSRFNGFGFRGEEEAFYQYYKNQVMINFDTVSGIST
LNVTSFDALESKKINEALLKQGEALINQLNDRARADTVRYAEEVVKTAAERVKEASQN
LTDYRIANGVFDLKAQSEVQMGLVSKLQDELIVIQTQLDQVKAVTPENPQIPGLQARE
QSLRKEIDQQLRAISGGGHSSLSNQAAEYQRVYLENQLAEQQLAAAMTSLESAKVEAD
RQQLYLEVISQPSLPDLAHEPKRLYNIVATLIIGLMVYGILSLLTASIREHKN"
misc_feature 81668..82732
/gene="ctrB"
/locus_tag="NMB0072"
/note="Capsule polysaccharide export protein [Cell
envelope biogenesis, outer membrane]; Region: KpsE;
COG3524"
/db_xref="CDD:226055"
gene 82735..83532
/gene="ctrC"
/locus_tag="NMB0073"
/db_xref="GeneID:902179"
CDS 82735..83532
/gene="ctrC"
/locus_tag="NMB0073"
/note="identified by similarity to EGAD:15907; match to
protein family HMM PF01061"
/codon_start=1
/transl_table=11
/product="capsule polysaccharide export inner-membrane
protein"
/protein_id="NP_273137.1"
/db_xref="GI:15676009"
/db_xref="GeneID:902179"
/translation="MKALHKTSFWESLAIQRRVIGALLMREIITRYGRNNIGFLWLFV
EPLLMTFVIVLMWKFLRADRYSTLNIVAFAITGYPMLMMWRNASKRAVGSISSNASLL
YHRNVRVLDTILARMILEIAGATIAQIVIMAVLIAIGWIEMPADMFYMLMAWLLMAFF
AIGLGLVICSIAFNFEPFGKIWGTLTFVMMPLSGAFFFVHNLPPKVQEYALMIPMVHG
TEMFRAGYFGSDVITYENPWYIVLCNLVLLLFGLAMVSKFSKGVEPQ"
misc_feature 82735..83529
/gene="ctrC"
/locus_tag="NMB0073"
/note="ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagG; COG1682"
/db_xref="CDD:224596"
misc_feature 82786..83415
/gene="ctrC"
/locus_tag="NMB0073"
/note="ABC-2 type transporter; Region: ABC2_membrane;
pfam01061"
/db_xref="CDD:216273"
gene 83529..84179
/gene="ctrD"
/locus_tag="NMB0074"
/db_xref="GeneID:902180"
CDS 83529..84179
/gene="ctrD"
/locus_tag="NMB0074"
/note="identified by similarity to EGAD:15804; match to
protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="capsule polysaccharide export ATP-binding
protein CtrD"
/protein_id="NP_273138.1"
/db_xref="GI:15676010"
/db_xref="GeneID:902180"
/translation="MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGK
STLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYV
KAFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP"
misc_feature 83529..84173
/gene="ctrD"
/locus_tag="NMB0074"
/note="ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagH; COG1134"
/db_xref="CDD:224057"
misc_feature 83532..84137
/gene="ctrD"
/locus_tag="NMB0074"
/note="ATP-binding cassette component of polysaccharide
transport system; Region: ABC_KpsT_Wzt; cd03220"
/db_xref="CDD:213187"
misc_feature 83640..83663
/gene="ctrD"
/locus_tag="NMB0074"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213187"
misc_feature order(83649..83654,83658..83666,83859..83861,83967..83972,
84063..84065)
/gene="ctrD"
/locus_tag="NMB0074"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213187"
misc_feature 83850..83861
/gene="ctrD"
/locus_tag="NMB0074"
/note="Q-loop/lid; other site"
/db_xref="CDD:213187"
misc_feature 83895..83924
/gene="ctrD"
/locus_tag="NMB0074"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213187"
misc_feature 83955..83972
/gene="ctrD"
/locus_tag="NMB0074"
/note="Walker B; other site"
/db_xref="CDD:213187"
misc_feature 83979..83990
/gene="ctrD"
/locus_tag="NMB0074"
/note="D-loop; other site"
/db_xref="CDD:213187"
misc_feature 84051..84071
/gene="ctrD"
/locus_tag="NMB0074"
/note="H-loop/switch region; other site"
/db_xref="CDD:213187"
gene 84243..86516
/locus_tag="NMB0075"
/db_xref="GeneID:902181"
CDS 84243..86516
/locus_tag="NMB0075"
/note="identified by similarity to EGAD:97859; match to
protein family HMM PF00575"
/codon_start=1
/transl_table=11
/product="transcriptional accessory protein Tex"
/protein_id="NP_273139.1"
/db_xref="GI:15676011"
/db_xref="GeneID:902181"
/translation="MNITQILSQELSATAAQITAAVELLDDGATVPFIARYRKEATGG
LDDTQLRRLAERLQYLRELEERKAVVLKSIEEQGKLSDDLRAQIEAADNKTALEDLYL
PYKPKRRTKAQIAREHGLQPLADVLLAEQSQDVEAAAQGYLNENVPDAKAALDGARAI
LMEQFAEDAELIGTLRDKLWNEAEIHAQVVEGKETEGEKFSDYFDHREPVRTMPSHRA
LAVLRGRNEGVLNIALKYQPDDTPITRQSEYEQIIACRFKVSDGHKWLRDTVRLTWRA
KIFLSLELEALGRLKEAADTDAITVFARNLKDLLLVAPAGRLTTLGLDPGYRNGVKCA
VVDDTGKLLDTVIVYLHQENNMLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVR
GMPEMGLHKIVVSEAGASIYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKID
PKSIGVGQYQHDVNQNQLAKSLDAVVEDCVNAVGVDVNTASAPLLARISGLNQTLAQN
IVAYRDENGAFDSRKKLLKVPRLGEKTFEQAAGFLRINGGKEPLDASAVHPEAYPVVA
KMLAQQGISAAELIGNRERVKQIKASDFTDERFGLPTILDILSELEKPGRDPRGEFQT
ASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRE
VVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKHKMPSENRSRERTAGRKPQRND
RAPANSAMADAFAKLKR"
misc_feature 84243..86513
/locus_tag="NMB0075"
/note="Transcriptional accessory protein [Transcription];
Region: Tex; COG2183"
/db_xref="CDD:225094"
misc_feature 84261..84833
/locus_tag="NMB0075"
/note="Tex-like protein N-terminal domain; Region: Tex_N;
pfam09371"
/db_xref="CDD:150144"
misc_feature 85197..85481
/locus_tag="NMB0075"
/note="Likely ribonuclease with RNase H fold; Region:
YqgFc; smart00732"
/db_xref="CDD:128971"
misc_feature 85620..86114
/locus_tag="NMB0075"
/note="Catalytic domain of glycoside hydrolase (GH)
families 38 and 57, lactam utilization protein LamB/YcsF
family proteins, YdjC-family proteins, and similar
proteins; Region: GH38-57_N_LamB_YdjC_SF; cl17191"
/db_xref="CDD:247745"
misc_feature 86160..86363
/locus_tag="NMB0075"
/note="S1_Tex: The C-terminal S1 domain of a transcription
accessory factor called Tex, which has been characterized
in Bordetella pertussis and Pseudomonas aeruginosa. The
tex gene is essential in Bortella pertusis and is named
for its role in toxin expression; Region: S1_Tex; cd05685"
/db_xref="CDD:240190"
misc_feature order(86184..86186,86208..86210,86238..86240,86244..86246)
/locus_tag="NMB0075"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240190"
gene 86547..87549
/locus_tag="NMB0076"
/note="methyltransferase HphIm(C), authentic frameshift;
this gene contains a frame shift which is not the result
of sequencing error; identified by similarity to
EGAD:39873"
/pseudo
/db_xref="GeneID:902182"
gene 87536..87886
/locus_tag="NMB0077"
/db_xref="GeneID:903209"
CDS 87536..87886
/locus_tag="NMB0077"
/note="identified by similarity to EGAD:150447"
/codon_start=1
/transl_table=11
/product="site-specific DNA methylase, truncation"
/protein_id="NP_273140.1"
/db_xref="GI:15677984"
/db_xref="GeneID:903209"
/translation="MKMNKQYPKINYIGNKEKIASWICDQLPSDVDTVADVFSGGCSF
AYEAKKRGYRVITNDILAINYQIALALIENNHETLNDDDVAMIFSGSPHAGFMSQRYA
EKFYFHDEYQQLDL"
misc_feature 87569..>87865
/locus_tag="NMB0077"
/note="D12 class N6 adenine-specific DNA
methyltransferase; Region: MethyltransfD12; cl17344"
/db_xref="CDD:247898"
gene 87929..88585
/locus_tag="NMB0078"
/db_xref="GeneID:903208"
CDS 87929..88585
/locus_tag="NMB0078"
/note="identified by similarity to EGAD:19406; match to
protein family HMM TIGR01179"
/codon_start=1
/transl_table=11
/product="UDP-glucose 4-epimerase, truncation"
/protein_id="NP_273141.1"
/db_xref="GI:15677985"
/db_xref="GeneID:903208"
/translation="MAFTLMRRAMIRKMPYTEDMRPGDTANPYGASKAMVERMLTDIQ
KADPRWSMILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAAGKLPQLAVFGDDY
PTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRAFEAAS
GLTIPYEVKPRRAGDLACFYADPSYTKAQIGWQTQRDLTQMMEDSWRWVSNNPNGYDD
"
misc_feature <87929..88576
/locus_tag="NMB0078"
/note="UDP-glucose 4-epimerase [Cell envelope biogenesis,
outer membrane]; Region: GalE; COG1087"
/db_xref="CDD:224012"
misc_feature <87965..88558
/locus_tag="NMB0078"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature order(88013..88015,88025..88027)
/locus_tag="NMB0078"
/note="active site"
/db_xref="CDD:187535"
gene 88701..89768
/gene="rfbB-2"
/locus_tag="NMB0079"
/db_xref="GeneID:902183"
CDS 88701..89768
/gene="rfbB-2"
/locus_tag="NMB0079"
/EC_number="4.2.1.46"
/note="identified by similarity to EGAD:40672; match to
protein family HMM PF01370; match to protein family HMM
PF07993; match to protein family HMM TIGR01181"
/codon_start=1
/transl_table=11
/product="dTDP-D-glucose 4,6-dehydratase"
/protein_id="NP_273142.1"
/db_xref="GI:15676012"
/db_xref="GeneID:902183"
/translation="MRKILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESL
TEVADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNI
VGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPY
SASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYG
DGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPE
KPAGVARYEDLITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDN
KTWWQNVLNGSYRLERLGTGK"
misc_feature 88704..89705
/gene="rfbB-2"
/locus_tag="NMB0079"
/note="dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs;
Region: dTDP_GD_SDR_e; cd05246"
/db_xref="CDD:187557"
misc_feature 88707..89741
/gene="rfbB-2"
/locus_tag="NMB0079"
/note="dTDP-glucose 4,6 dehydratase; Provisional; Region:
PRK10084"
/db_xref="CDD:236649"
misc_feature order(88722..88724,88728..88739,88797..88808,88812..88817,
88872..88880,88941..88949,88953..88955,88998..89000,
89094..89102,89178..89180,89190..89192,89259..89270)
/gene="rfbB-2"
/locus_tag="NMB0079"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187557"
misc_feature order(88953..88961,89100..89108,89178..89180,89259..89267,
89292..89300,89307..89312,89343..89351,89364..89366,
89370..89372,89475..89477,89580..89582,89589..89591,
89601..89603)
/gene="rfbB-2"
/locus_tag="NMB0079"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187557"
misc_feature order(88965..88967,88971..88973,88980..88985,88992..88994,
89004..89009,89016..89018,89028..89030,89037..89039,
89118..89120,89151..89153,89157..89162,89166..89177,
89184..89186,89193..89198,89205..89210,89217..89222,
89226..89234,89592..89594)
/gene="rfbB-2"
/locus_tag="NMB0079"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187557"
misc_feature order(89001..89003,89100..89102,89178..89180,89190..89192)
/gene="rfbB-2"
/locus_tag="NMB0079"
/note="active site"
/db_xref="CDD:187557"
gene 89831..90697
/gene="rfbA-2"
/locus_tag="NMB0080"
/db_xref="GeneID:902184"
CDS 89831..90697
/gene="rfbA-2"
/locus_tag="NMB0080"
/EC_number="2.7.7.24"
/note="identified by similarity to EGAD:23719; match to
protein family HMM PF00483; match to protein family HMM
TIGR01207"
/codon_start=1
/transl_table=11
/product="glucose-1-phosphate thymidylyltransferase"
/protein_id="NP_273143.1"
/db_xref="GI:15676013"
/db_xref="GeneID:902184"
/translation="MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLA
GIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGNDNV
CLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFNENFRAVSIEEK
PQRPKSDWAVTGLYFYDNRAVEFAKQLKPSARGELEITDLNRMYLEDGSLSVQILGRG
FAWLDTGTHESLHEAASFVQTVQNIQNLHIACLEEIAWRNGWLSDEKLEELARPMAKN
QYGQYLLRLLKK"
misc_feature 89831..90550
/gene="rfbA-2"
/locus_tag="NMB0080"
/note="G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase; Region:
G1P_TT_short; cd02538"
/db_xref="CDD:133019"
misc_feature 89834..90691
/gene="rfbA-2"
/locus_tag="NMB0080"
/note="glucose-1-phosphate thymidylyltransferase, short
form; Region: rmlA; TIGR01207"
/db_xref="CDD:130274"
misc_feature order(89846..89848,89852..89857,90068..90070,90077..90088,
90152..90154,90260..90262,90305..90310,90338..90340,
90422..90424)
/gene="rfbA-2"
/locus_tag="NMB0080"
/note="substrate binding site; other site"
/db_xref="CDD:133019"
misc_feature order(89864..89866,89873..89881,89888..89893,89903..89911,
89915..89926,89933..89935,90008..90010,90164..90169,
90233..90244,90254..90259,90491..90499,90509..90514,
90521..90523,90530..90538,90545..90550)
/gene="rfbA-2"
/locus_tag="NMB0080"
/note="tetramer interface; other site"
/db_xref="CDD:133019"
gene 90736..91290
/locus_tag="NMB0081"
/db_xref="GeneID:902185"
CDS 90736..91290
/locus_tag="NMB0081"
/note="identified by similarity to GP:3132257; match to
protein family HMM PF00908; match to protein family HMM
TIGR01221"
/codon_start=1
/transl_table=11
/product="dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase"
/protein_id="NP_273144.1"
/db_xref="GI:15676014"
/db_xref="GeneID:902185"
/translation="MKDKKMNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQV
CERTFVQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWV
GEILSAENKRQLWVPEGFAHGFYVLSDEAEFVYKCTDYYNPKAEHSLIWNDPTVGIDW
PLQGEPNLSPKDLAGKVLSEAVTF"
misc_feature 90754..91278
/locus_tag="NMB0081"
/note="dTDP-4-dehydrorhamnose 3,5-epimerase; Region: rmlC;
TIGR01221"
/db_xref="CDD:233319"
gene 91315..93429
/gene="lipA"
/locus_tag="NMB0082"
/db_xref="GeneID:902186"
CDS 91315..93429
/gene="lipA"
/locus_tag="NMB0082"
/note="identified by similarity to EGAD:15481; match to
protein family HMM PF05159"
/codon_start=1
/transl_table=11
/product="capsule polysaccharide modification protein"
/protein_id="NP_273145.1"
/db_xref="GI:15676015"
/db_xref="GeneID:902186"
/translation="MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEF
HICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSI
VYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSD
DHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPD
VLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTT
FGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSL
FDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVK
LSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSI
YFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTV
ILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISP
EDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLT
QDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNN
GLHRGCFAKKLGKIKQLYRSFK"
misc_feature 91384..93426
/gene="lipA"
/locus_tag="NMB0082"
/note="Capsule polysaccharide export protein [Cell
envelope biogenesis, outer membrane]; Region: KpsC;
COG3563"
/db_xref="CDD:226093"
gene 93566..94825
/gene="lipB"
/locus_tag="NMB0083"
/db_xref="GeneID:902187"
CDS 93566..94825
/gene="lipB"
/locus_tag="NMB0083"
/note="identified by similarity to EGAD:7740; match to
protein family HMM PF05159"
/codon_start=1
/transl_table=11
/product="capsule polysaccharide modification protein"
/protein_id="NP_273146.1"
/db_xref="GI:15676016"
/db_xref="GeneID:902187"
/translation="MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLADWLTANGKT
VHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQEYITQHHIQAVVCFGDTRPYHV
IAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
KAPTPVHGGFTPMAKNAIRYYIELFRNPRKYPDYIHHRAPNAGHYLKPWSLSILKRLN
YYIEDIQIAKRVEAGKYGKFFIVPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAP
ADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVPLPVFLRHGLGMVTI
NSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLN
VTQINGNFYSQVFFPNKKTSNSSTPVI"
misc_feature 93575..94801
/gene="lipB"
/locus_tag="NMB0083"
/note="Capsule polysaccharide export protein [Cell
envelope biogenesis, outer membrane]; Region: KpsS;
COG3562"
/db_xref="CDD:226092"
misc_feature 93830..94768
/gene="lipB"
/locus_tag="NMB0083"
/note="Capsule polysaccharide biosynthesis protein;
Region: Capsule_synth; pfam05159"
/db_xref="CDD:218473"
gene 95192..96597
/locus_tag="NMB0084"
/note="conserved hypothetical protein, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to EGAD:91374"
/pseudo
/db_xref="GeneID:902188"
gene 96815..98029
/gene="gltS"
/locus_tag="NMB0085"
/db_xref="GeneID:902189"
CDS 96815..98029
/gene="gltS"
/locus_tag="NMB0085"
/note="identified by similarity to EGAD:28525; match to
protein family HMM PF03616; match to protein family HMM
TIGR00210"
/codon_start=1
/transl_table=11
/product="sodium/glutamate symport carrier protein"
/protein_id="NP_273147.1"
/db_xref="GI:15676017"
/db_xref="GeneID:902189"
/translation="MEWEFNSYYTLIAATLVLLVGKFLVQKIKFLRDFNIPEPVAGGL
IAAIVLFALHEAYGVSFKFEKPLQNAFMLIFFTSIGLSADFSRLKAGGLPLVVFTAIV
GGFILVQNFVGVGLATALGLDPLIGLITGSVSLTGGHGTSGAWGPNFETQYGLVGATG
LGIASATFGLVFGGLIGGPVARRLINKMGRKPVENKKQDQDDNADDVFEQAKRTRLIT
AESAVETLAMFAACLAFAEIMDGFDKEYLFDLPKFVWCLFGGVVIRNILTAAFKVNMF
DRAIDVFGNASLSLFLAMALLNLKLWELTGLAGPVTVILAVQTVVMVLYATFVTYVFM
GRDYDAAVLAAGHCGFGLGATPTAVANMQSVTHTFGASHKAFLIVPMVGAFFVDLINA
AILTGFVNFFKG"
misc_feature 96815..98026
/gene="gltS"
/locus_tag="NMB0085"
/note="Na+/glutamate symporter [Amino acid transport and
metabolism]; Region: GltS; COG0786"
/db_xref="CDD:223857"
gene 98128..99144
/locus_tag="NMB0086"
/db_xref="GeneID:902190"
CDS 98128..99144
/locus_tag="NMB0086"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273148.1"
/db_xref="GI:15676018"
/db_xref="GeneID:902190"
/translation="MYRKLIALPFALLLAACGREEPPKALECANPAVLQGIRGNIQET
LTQEARSFAREDGRQFVDADKIIAAAYGLAFSLEHASETQEGGRTFCIADLNITVPSE
TLADAKANSPLLYGETALSDIVRQKTGGNVEFKDGVLTAAVRFLPVKDGQTAFVDNTV
GMAAQTLSAALLPYGVKSIVMIDGKAVKKEDAVRILSGKAREEEPSKPTPEDILEHNA
AGGDAGVPQAAEGAPEPEILHPDDGERADTVTVSRGEVEEARVQNQRAESEITKLWGG
LDTDVQKELVGEQRKWAQEKISNCRQAAAQADRQEYAEYLKLQCDTRMTRERIQYLRG
YSID"
misc_feature <98959..99132
/locus_tag="NMB0086"
/note="Protein of unknown function (DUF1311); Region:
DUF1311; cl01530"
/db_xref="CDD:242560"
gene 99155..99352
/locus_tag="NMB0087"
/db_xref="GeneID:902191"
CDS 99155..99352
/locus_tag="NMB0087"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273149.1"
/db_xref="GI:15676019"
/db_xref="GeneID:902191"
/translation="MNTVPKSRIPVKPLPEKTTDEAKVEKWRQLGAEHGLSGEWAVAV
RLGENGFTEEQMENIANLFGR"
misc_feature 99215..>99346
/locus_tag="NMB0087"
/note="cyanate hydratase; Validated; Region: PRK02866"
/db_xref="CDD:235079"
gene complement(99777..101177)
/locus_tag="NMB0088"
/db_xref="GeneID:902192"
CDS complement(99777..101177)
/locus_tag="NMB0088"
/note="identified by similarity to EGAD:16317; match to
protein family HMM PF03349"
/codon_start=1
/transl_table=11
/product="outer membrane protein P1"
/protein_id="NP_273150.1"
/db_xref="GI:15676020"
/db_xref="GeneID:902192"
/translation="MTPSALKKTVLLLGTAFAAASVHASGYHFGTQSVNAQSTANAAA
AEAADASTIFYNPAGLTKLDSSQISVNANIVLPSIHYEADSATDFTGLPVQGSKSGKI
TKTTVAPHIYGAYKVNDNLTVGLGVYVPFGSATEYEKDSVLRHNINKLGLTSIAVEPV
AAWKLNDRHSFGAGIIAQHTSAELRKYADWGIKSKAEILTAKPPKPNGVAEAAKIQAD
GHADVKGSDWGFGYQLAWMWDINDRARVGVNYRSKVSHTLKGDAEWAADGAAAKAMWS
TMLAANGYTANEKARVKIVTPESLSVHGMYKVSDKADLFGDVTWTRHSRFDKAELVFE
KEKTVVKGKSDRTTITPNWRNTYKVGFGGSYQISEPLQLRAGIAFDKSPVRNADYRMN
SLPDGNRIWFSAGMKYHIGKNHVVDAAYTHIHINDTSYRTAKASGNDVDSKGASSARF
KNHADIIGLQYTYKFK"
misc_feature complement(99783..101174)
/locus_tag="NMB0088"
/note="Long-chain fatty acid transport protein [Lipid
metabolism]; Region: FadL; COG2067"
/db_xref="CDD:224978"
gene complement(101492..102964)
/gene="pykA"
/locus_tag="NMB0089"
/db_xref="GeneID:902193"
CDS complement(101492..102964)
/gene="pykA"
/locus_tag="NMB0089"
/EC_number="2.7.1.40"
/note="identified by similarity to EGAD:21471; match to
protein family HMM PF00224; match to protein family HMM
PF02887; match to protein family HMM TIGR01064"
/codon_start=1
/transl_table=11
/product="pyruvate kinase"
/protein_id="NP_273151.1"
/db_xref="GI:15676021"
/db_xref="GeneID:902193"
/translation="MNQTSRDLTRISHNTKIVATLGPGSNNVELLEDMIRVGGLNVVR
FNFSHGTPEFHQENALIVREAAKRAGQEIAIIADLQGPKIRVGKIAGGGIELNKGETL
VLDAALEGEGTREAVGLDYRDLPDDVAAGDVLWLDDGLLTLTVESVEGSRIITRVENS
HVLKSNKGINKRGGGLSAGALTEKDFRDLKTAIAIGCDYLAISFVKSAEDLHIARAKV
EEEMKGSTAVRPGLVSKIERVEAIENLDEIILAGDGIMVARGDLAVEVGHAAVPALQK
RMIRRARELRRFSITATQMMESMITNPVPTRAEVSDVANAVLDGTDAVMCSAETAVGA
YPFETVSQMAIICAAAEKEQDSLNGVAEQVEYPEAVSTNLAVAGGAVSVARAVHAKAI
VALTESGSTAFEISRHNITLPIFALTPSVSAQRRMAMYRGVRPLILATSTDHDTALNE
VETMLVEHNILHSGDQYIITSGSQMRESGSTNTLEVLRVK"
misc_feature complement(101528..102937)
/gene="pykA"
/locus_tag="NMB0089"
/note="pyruvate kinase; Provisional; Region: PRK05826"
/db_xref="CDD:235619"
misc_feature complement(101498..102925)
/gene="pykA"
/locus_tag="NMB0089"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl17342"
/db_xref="CDD:247896"
misc_feature complement(order(101669..101677,101681..101683,
101687..101692,101699..101701,101732..101734,
101738..101740,101744..101746,101903..101908,
101912..101914,101999..102001,102005..102007,
102101..102103,102113..102118,102170..102172,
102293..102295,102326..102328,102347..102349,
102371..102373,102416..102430,102437..102439,
102455..102460,102710..102721,102743..102745,
102749..102751,102920..102925))
/gene="pykA"
/locus_tag="NMB0089"
/note="domain interfaces; other site"
/db_xref="CDD:238178"
misc_feature complement(order(102086..102088,102182..102184,
102254..102256,102260..102262,102353..102355,
102731..102733,102827..102829,102833..102835))
/gene="pykA"
/locus_tag="NMB0089"
/note="active site"
/db_xref="CDD:238178"
gene 103224..103867
/locus_tag="NMB0090"
/note="IS1016 family transposase, authentic frameshift;
this gene contains a frame shift which is not the result
of sequencing error; identified by similarity to
GP:4102010"
/pseudo
/db_xref="GeneID:902194"
gene 104406..104642
/locus_tag="NMB0091"
/db_xref="GeneID:902195"
CDS 104406..104642
/locus_tag="NMB0091"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273152.1"
/db_xref="GI:15676022"
/db_xref="GeneID:902195"
/translation="MKELHTSELVEVSGGKFHIFAQGGGNLGKKDMVAVGKIGASYSP
NNSGVEFSVSKQFGYVQGLGVQFSKPTFGISKKW"
gene 104636..104863
/locus_tag="NMB0092"
/db_xref="GeneID:902196"
CDS 104636..104863
/locus_tag="NMB0092"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273153.1"
/db_xref="GI:15676023"
/db_xref="GeneID:902196"
/translation="MVRFFVLSFLTLINLCSLSACNSHFTGNINPLGTHNKVANPNCA
NSANSHIRQPSRKNYDPTEYSAWLQYMHDCK"
gene 104863..104949
/locus_tag="NMB0093"
/db_xref="GeneID:902197"
CDS 104863..104949
/locus_tag="NMB0093"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273154.1"
/db_xref="GI:15676024"
/db_xref="GeneID:902197"
/translation="MSNDENLLFSQPHLTKVNIMQVLTLNEI"
gene 105235..105423
/locus_tag="NMB0094"
/db_xref="GeneID:902198"
CDS 105235..105423
/locus_tag="NMB0094"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273155.1"
/db_xref="GI:15676025"
/db_xref="GeneID:902198"
/translation="MKKYSDYFKYLIFFLILLPTNYLVSHYVVQTSMSMLSILSSSII
TTCLFFVFTNLSQSKKHK"
gene 105430..105582
/locus_tag="NMB0095"
/db_xref="GeneID:902199"
CDS 105430..105582
/locus_tag="NMB0095"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273156.1"
/db_xref="GI:15676026"
/db_xref="GeneID:902199"
/translation="MSNNHSFFRPEVFVAQRNKWTGPVGWVDAMGAGIFSVAGGYNIG
RGMMKP"
gene 105683..105853
/locus_tag="NMB0096"
/db_xref="GeneID:902200"
CDS 105683..105853
/locus_tag="NMB0096"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273157.1"
/db_xref="GI:15676027"
/db_xref="GeneID:902200"
/translation="MNTETIYATVFCILAATISGLLVKFNVIKIETSINSKFMLLGIS
ILIIGIFLSIFF"
gene 105867..107354
/locus_tag="NMB0097"
/note="secretion protein, degenerate; this gene contains a
premature stop which is not the result of sequencing
error; identified by similarity to EGAD:7961"
/pseudo
/db_xref="GeneID:902201"
gene 107320..109406
/locus_tag="NMB0098"
/note="ABC transporter ATP-binding protein, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to EGAD:37057"
/pseudo
/db_xref="GeneID:902202"
gene complement(109488..109631)
/locus_tag="NMB0099"
/db_xref="GeneID:902203"
CDS complement(109488..109631)
/locus_tag="NMB0099"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273158.1"
/db_xref="GI:15676028"
/db_xref="GeneID:902203"
/translation="MEWAENETVKLAQKWEQEQKKQQIQQKKETEKSPKHKASRDDWE
MER"
gene complement(109631..109777)
/locus_tag="NMB0100"
/db_xref="GeneID:902204"
CDS complement(109631..109777)
/locus_tag="NMB0100"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273159.1"
/db_xref="GI:15676029"
/db_xref="GeneID:902204"
/translation="MKFVKSGRNPLKKMEKKLNIIKNIQEFMVKFVELALMAISEKSY
IVVP"
gene 109857..110499
/locus_tag="NMB0101"
/note="IS1016 family transposase, authentic frameshift;
this gene contains a frame shift which is not the result
of sequencing error; identified by similarity to
GP:4102010"
/pseudo
/db_xref="GeneID:902205"
gene 110615..111133
/locus_tag="NMB0102"
/db_xref="GeneID:902206"
CDS 110615..111133
/locus_tag="NMB0102"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273160.1"
/db_xref="GI:15676030"
/db_xref="GeneID:902206"
/translation="MWRVLSALPIGVVFFDLIYGFVLNVLQGLDLQRAVPDSEGVLAV
TPDIAFNSLQIVANGGMAAVVCFGLAVVFLLNRSVRRRQVLEIGVFRMLGLVAVLAFS
APSVWEWANALPLLLKGADVVNTGNARYVLTALCMPFPAVSCVIGLVGRFRLQTASGR
AAKSGGAGKADG"
gene complement(111409..111903)
/locus_tag="NMB0103"
/db_xref="GeneID:902207"
CDS complement(111409..111903)
/locus_tag="NMB0103"
/note="identified by similarity to GP:2909665; match to
protein family HMM PF03412"
/codon_start=1
/transl_table=11
/product="bacteriocin resistance protein"
/protein_id="NP_273161.1"
/db_xref="GI:15676031"
/db_xref="GeneID:902207"
/translation="MDFSCGAASIATLLNNFYGRHYSEAEILDKMDKTQMRASFDDMQ
RIMPELGFEAQGYALPFEQLVQLKIPVIVYLKYRKNNHFSVLNGINGETVLLADPSLG
HVSMSKSQFLSAWKTRDGEMEGKILAIVPKNTDFVRNQMFFNKNPVRQTRFTVEQIQM
RQKR"
misc_feature complement(111517..111900)
/locus_tag="NMB0103"
/note="A sub-family of peptidase family C39. Peptidase
family C39 mostly contains bacteriocin-processing
endopeptidases from bacteria. The cysteine peptidases in
family C39 cleave the 'double-glycine' leader peptides
from the precursors of various...; Region: Peptidase_C39G;
cd02423"
/db_xref="CDD:239103"
misc_feature complement(order(111610..111612,111658..111660,
111889..111891))
/locus_tag="NMB0103"
/note="putative active site [active]"
/db_xref="CDD:239103"
gene complement(112406..113080)
/locus_tag="NMB0104"
/db_xref="GeneID:902208"
CDS complement(112406..113080)
/locus_tag="NMB0104"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273162.1"
/db_xref="GI:15676032"
/db_xref="GeneID:902208"
/translation="MLAIYSINILIYNEKSFFRVTLYFVKNFVSFSKPRKSNEMMQKH
KCLIDFILTVASQIAYADLPLSLEELLTDKGKFKLESSISYINTERNQSEFANPIYVQ
TSATKIATVMAMMITPVMAQNLDSQVFDSQNVKAIQLSQAEMKETQGEFVPIIAAAAF
GGALGAWGYHGANLYNHGKLGTAQGAATATGIGAATGVAAKQGWLLLPEADWLGIWHG
DRVFMH"
gene complement(113362..114204)
/locus_tag="NMB0105"
/db_xref="GeneID:902209"
CDS complement(113362..114204)
/locus_tag="NMB0105"
/note="identified by similarity to EGAD:108538; match to
protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="PhnO-like protein"
/protein_id="NP_273163.1"
/db_xref="GI:15676033"
/db_xref="GeneID:902209"
/translation="MLVCNPYEVVIHGTTSSGKIFRPSDWAERLCGILSSFTKDHRLS
YSKWVRPILVDNIRCVAVDKKLETDNPQMFRFLMDFAADNDLRVIDCKALLEEREQGG
QNNPADEHVMLAQAIEEKHAAEKAQEQTASGASYVLREIGADDTATAFAALSVLRSAL
TDINRFTEQINKVQRPQGYRLLGIFEEGKHNAVAVCGFREACTLASGRHIHIDDIVTL
PQSRRKGYASRLLEEVRKIGAETGVTKIHLNVHVNHDRADAHRLYFKNGFEICAYHFR
CDPK"
misc_feature complement(113935..114195)
/locus_tag="NMB0105"
/note="Protein of unknown function (DUF3579); Region:
DUF3579; pfam12112"
/db_xref="CDD:152547"
misc_feature complement(113377..>113685)
/locus_tag="NMB0105"
/note="Acetyltransferases [General function prediction
only]; Region: RimI; COG0456"
/db_xref="CDD:223532"
misc_feature complement(113458..113664)
/locus_tag="NMB0105"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(113521..113526,113554..113562))
/locus_tag="NMB0105"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 114443..115363
/gene="pyrB"
/locus_tag="NMB0106"
/db_xref="GeneID:902210"
CDS 114443..115363
/gene="pyrB"
/locus_tag="NMB0106"
/EC_number="2.1.3.2"
/note="catalyzes the transfer of the carbamoyl moiety from
carbamoyl phosphate to L- aspartate in pyrimidine
biosynthesis"
/codon_start=1
/transl_table=11
/product="aspartate carbamoyltransferase"
/protein_id="NP_273164.1"
/db_xref="GI:15676034"
/db_xref="GeneID:902210"
/translation="MPNPLYRQHIISISDLSREQLECLLQTALKLKAHPRGDLLEGKL
IGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAI
IQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAG
DLKYGRTVHSLCQALKRWNCEFAFVSPPSLAMPDYITEELDEAGCRYRILGSLEEAAE
WADILYMTRVQRERFDEQEFAKIQGKFNLEASMLARAKPNLRVLHPLPRVDEIHPDVD
ATPHAYYFEQATNGVYARMAILSLVLNEEV"
misc_feature 114443..115357
/gene="pyrB"
/locus_tag="NMB0106"
/note="Aspartate carbamoyltransferase, catalytic chain
[Nucleotide transport and metabolism]; Region: PyrB;
COG0540"
/db_xref="CDD:223614"
misc_feature 114464..114880
/gene="pyrB"
/locus_tag="NMB0106"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:217204"
misc_feature 114896..115345
/gene="pyrB"
/locus_tag="NMB0106"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:215776"
gene 115373..115831
/gene="pyrI"
/locus_tag="NMB0107"
/db_xref="GeneID:902211"
CDS 115373..115831
/gene="pyrI"
/locus_tag="NMB0107"
/EC_number="2.1.3.2"
/note="involved in the allosteric regulation of aspartate
carbamoyltransferase"
/codon_start=1
/transl_table=11
/product="aspartate carbamoyltransferase"
/protein_id="NP_273165.1"
/db_xref="GI:15676035"
/db_xref="GeneID:902211"
/translation="METPKLSVEAIEKGTVIDHIPAGRGLTILRQFKLLHYGNAVTVG
FNLPSKTQGSKDIIKIKGVCLDDKAADRLALFAPEAVVNTIDNFKVVQKRHLNLPDEI
AEVFRCPNTNCAGHGEPVKSRFYVKKHNGQTRLKCHYCEKTYSRDSVAEA"
misc_feature 115373..115825
/gene="pyrI"
/locus_tag="NMB0107"
/note="aspartate carbamoyltransferase regulatory subunit;
Reviewed; Region: PRK00893"
/db_xref="CDD:234859"
misc_feature 115385..115666
/gene="pyrI"
/locus_tag="NMB0107"
/note="Aspartate carbamoyltransferase regulatory chain,
allosteric domain; Region: PyrI; pfam01948"
/db_xref="CDD:216803"
misc_feature 115670..115825
/gene="pyrI"
/locus_tag="NMB0107"
/note="Aspartate carbamoyltransferase regulatory chain,
metal binding domain; Region: PyrI_C; pfam02748"
/db_xref="CDD:217213"
gene 115896..116561
/locus_tag="NMB0108"
/db_xref="GeneID:902212"
CDS 115896..116561
/locus_tag="NMB0108"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273166.1"
/db_xref="GI:15676036"
/db_xref="GeneID:902212"
/translation="MMMHASVQSRFAPILYVLIFFAGFLTAQIWFNQKAYTEELPPLL
SALSAVALVWLAWAFVSARSKAKAEKFYREKMIQNESIHPVLHASLQHLEHKPQILAL
LVKNHGKGMAEQVRFKAEVLPDDEDARTIAAELAKMDMFALGTDAVASGETYGRVFAD
IFELSAALEGRAFKGMLKLTAEYKNIFGDACRSETALELGALNQALQEISKTSEKSKR
IFY"
gene complement(116624..117955)
/locus_tag="NMB0109"
/db_xref="GeneID:902213"
CDS complement(116624..117955)
/locus_tag="NMB0109"
/note="identified by similarity to EGAD:109565; match to
protein family HMM PF01476"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273167.1"
/db_xref="GI:15676037"
/db_xref="GeneID:902213"
/translation="MLKCGTFFITRHIPRGCRRFFQPNQARQTEIYQIRGTVMQRRII
TLLCAAGMAFSTQTLAANLEVRPNAPERYTVKQGDTLWGISGKYLYSPWQWGRLWDAN
RDQIHNPDLIYPDQVLVLRHVDGEPRLGLEQTDGIPVVKMSPDKEVSGYGIPAIDVNF
YRIFMRHPQIVSRKETAAAPRLLSGPEGRLLYTKGTRVYTKGLKEPGRYLTYRINKNI
TDPDTGKFLGQEVAFSGIVRSLDYTDSVLEQRSKQAGERPKDNEYHTRTHPLITPLRT
PSIQPLVVETAISEIQQGDYLMKMPEDTDRFNMMPHEPSRPVQAKIVSVFEGTRIAGQ
FQTITIDKGEADGLDKGTVLSLYKRKKTMQVDLSNNFKSRDTVELISTPAEEVGLAMV
YRTSEHLSSAIILENISDISVGDTAANPGRDLDNIPDQGRSRVKFGFNRSE"
misc_feature complement(117596..117739)
/locus_tag="NMB0109"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(116651..117640)
/locus_tag="NMB0109"
/note="Uncharacterized protein containing LysM domain
[Function unknown]; Region: XkdP; COG1652"
/db_xref="CDD:224566"
gene 118025..118528
/gene="def"
/locus_tag="NMB0110"
/db_xref="GeneID:902214"
CDS 118025..118528
/gene="def"
/locus_tag="NMB0110"
/EC_number="3.5.1.88"
/note="cleaves off formyl group from N-terminal methionine
residues of newly synthesized proteins; binds iron(2+)"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="NP_273168.1"
/db_xref="GI:15676038"
/db_xref="GeneID:902214"
/translation="MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRG
IGLAATQVDVHERVVVMDLTEDRSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT
RAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLK
KRQKHTI"
misc_feature 118040..118453
/gene="def"
/locus_tag="NMB0110"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:238271"
misc_feature order(118154..118162,118175..118177,118292..118300,
118421..118426,118433..118435)
/gene="def"
/locus_tag="NMB0110"
/note="active site"
/db_xref="CDD:238271"
misc_feature order(118160..118162,118175..118177,118298..118300,
118424..118426)
/gene="def"
/locus_tag="NMB0110"
/note="catalytic residues [active]"
/db_xref="CDD:238271"
misc_feature order(118295..118297,118421..118423,118433..118435)
/gene="def"
/locus_tag="NMB0110"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238271"
gene 118615..119541
/gene="fmt"
/locus_tag="NMB0111"
/db_xref="GeneID:902215"
CDS 118615..119541
/gene="fmt"
/locus_tag="NMB0111"
/EC_number="2.1.2.9"
/note="identified by similarity to EGAD:24704; match to
protein family HMM PF00551; match to protein family HMM
PF02911; match to protein family HMM TIGR00460"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="NP_273169.1"
/db_xref="GI:15676039"
/db_xref="GeneID:902215"
/translation="MKVIFAGTPDFAAAALRAVAAAGFEIPLVLTQPDRPKGRGMQLT
APPVKQAALELGLRVEQPEKLRNNAEALQMLKEVEADVMVVAAYGLILPQEVLDTPKH
GCLNIHASLLPRWRGAAPIQRAIEAGDAETGVCIMQMDIGLDTGDVVSEHRYAIQPTD
TANEVHDALMEIGAAAVVADLQQLQSKGRLNAVKQPEEGVTYAQKLSKEEARIDWSKS
AAVIERKIRAFNPVPAAWVEYQGKPMKIRRAEVVAQQGAAGEVLSCSADGLVVACGEN
ALKITELQPAGGRRMNIAAFAAGRHIEAGAKL"
misc_feature 118615..119538
/gene="fmt"
/locus_tag="NMB0111"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:234567"
misc_feature 118615..119232
/gene="fmt"
/locus_tag="NMB0111"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature order(118633..118635,118645..118650,118867..118890,
118903..118905,118930..118941,118963..118965,
119023..119025,119029..119034,119041..119046)
/gene="fmt"
/locus_tag="NMB0111"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature order(118636..118641,118645..118647,118708..118710,
118720..118722,118726..118737,118870..118881,
118930..118932,118936..118941,118963..118971,
119227..119229)
/gene="fmt"
/locus_tag="NMB0111"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature order(118867..118869,118876..118878,118882..118890,
118903..118905,118930..118932,119029..119034,
119041..119046)
/gene="fmt"
/locus_tag="NMB0111"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature order(118930..118932,118936..118938,119044..119046)
/gene="fmt"
/locus_tag="NMB0111"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature 119239..119493
/gene="fmt"
/locus_tag="NMB0111"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature order(119308..119310,119341..119343,119347..119349,
119464..119466,119470..119472,119476..119481,
119485..119487)
/gene="fmt"
/locus_tag="NMB0111"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene 119620..120879
/gene="rsmB"
/locus_tag="NMB0112"
/db_xref="GeneID:902216"
CDS 119620..120879
/gene="rsmB"
/locus_tag="NMB0112"
/note="identified by similarity to EGAD:36279; match to
protein family HMM PF01029; match to protein family HMM
PF01189; match to protein family HMM TIGR00563"
/codon_start=1
/transl_table=11
/product="16S RNA methyltransferase"
/protein_id="NP_273170.1"
/db_xref="GI:15676040"
/db_xref="GeneID:902216"
/translation="MSMALAQKLAADSIAAVAEGRNLQDVLAQIRTAHPDLMAQENGA
LQDIAYGCQRYLGSLKHMLAQMLKKPIGNPQLESLLLAALYQLHYTRNAPHAVVNEAV
ESIAKIGRGQYRSFANAVLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKH
WHNIAAALQSHPPMTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRL
PGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDID
AGRLKRVEDNIARLGFQTASTACADAQDLSAWYDGKPFDAVLADVPCTASGVARRNPD
VKWLRRPTDALKTARQQEALLDALWQVLKSGGRMLIATCSVFVEENDGQLQKFLNRHA
DAELIESRVLLPNKHQDGFYYALIQKQ"
misc_feature 119623..120876
/gene="rsmB"
/locus_tag="NMB0112"
/note="16S rRNA methyltransferase B; Provisional; Region:
PRK10901"
/db_xref="CDD:236790"
misc_feature 119635..119997
/gene="rsmB"
/locus_tag="NMB0112"
/note="NusB family; Region: NusB; pfam01029"
/db_xref="CDD:216253"
misc_feature 119635..119640
/gene="rsmB"
/locus_tag="NMB0112"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238253"
misc_feature 120358..120729
/gene="rsmB"
/locus_tag="NMB0112"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(120370..120390,120439..120444,120517..120525,
120577..120579)
/gene="rsmB"
/locus_tag="NMB0112"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 120899..121441
/locus_tag="NMB0113"
/db_xref="GeneID:902217"
CDS 120899..121441
/locus_tag="NMB0113"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273171.1"
/db_xref="GI:15676041"
/db_xref="GeneID:902217"
/translation="MLPAFQNVAAEGIDVSRAEARITDGGQLSISSRFQTELPDQLQQ
ALRRGVPLNFTLSWQLSAPIIASYRFKLGQLIGDDDNIDYKLSFHPLTNRYRVTVGAF
STDYDTLDAALRATGAVANWKVLNKGALSGAEAGETKAEIRLTLSTSKLPKPFQINAL
TSQNWHLDSGWKPLNIIGNK"
misc_feature 120920..121426
/locus_tag="NMB0113"
/note="Domain of unknown function (DUF4390); Region:
DUF4390; pfam14334"
/db_xref="CDD:222688"
gene 121441..123561
/locus_tag="NMB0114"
/db_xref="GeneID:902218"
CDS 121441..123561
/locus_tag="NMB0114"
/note="identified by similarity to EGAD:163355; match to
protein family HMM PF00512; match to protein family HMM
PF00672; match to protein family HMM PF02518"
/codon_start=1
/transl_table=11
/product="nitrogen regulation protein NtrY"
/protein_id="NP_273172.1"
/db_xref="GI:15676042"
/db_xref="GeneID:902218"
/translation="MRRFLPIAAICAVVLLYGLTAATGSTSSLADYFWWIVAFSAMLL
LVLSAVLARYVILLLKDRRDGVFGSQIAKRLSGMFTLVAVLPGVFLFGVSAQFINGTI
NSWFGNDTHEALERSLNLSKSALNLAADNALGNAVPVQIDLIGAASLPGDMGRVLEHY
AGSGFAQLALYNAASGKIEKSINPHKLDQPFPGKARWEKIQRAGSVRDLESIGGVLYA
QGWLSAGTHNGRDYALFFRQPVPKGVAEDAVLIEKARAKYAELSYSKKGLQTFFLATL
LIASLLSIFLALVMALYFARRFVEPVLSLAEGAKAVAQGDFSQTRPVLRNDEFGRLTK
LFNHMTEQLSIAKEADERNRRREEAARHYLECVLEGLTTGVVVFDEQGCLKTFNKAAE
QILGMPLTPLWGSSRHGWHGVSAQQSLLAEVFAAIGAAAGTDKPVHVKYAAPDDAKIL
LGKATVLPEDNGNGVVMVIDDITVLIHAQKEAAWGEVAKRLAHEIRNPLTPIQLSAER
LAWKLGGKLDEQDAQILTRSTDTIVKQVAALKEMVEAFRNYARSPSLKLENQDLNALI
GDVLALYEAGPCRFAAELAGEPLTVAADTTAMRQVLHNIFKNAAEAAEEADVPEVRVK
SETGQDGRIVLTVCDNGKGFGREMLHNAFEPYVTDKPAGTGLGLPVVKKIIEEHGGRI
SLSNQDAGGACVRIILPKTVKTYA"
misc_feature 121441..123540
/locus_tag="NMB0114"
/note="Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms]; Region: NtrY; COG5000"
/db_xref="CDD:227333"
misc_feature 122335..122469
/locus_tag="NMB0114"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(122335..122337,122344..122349,122353..122358,
122365..122370,122374..122376,122422..122427,
122431..122436,122443..122448,122452..122457,
122464..122469)
/locus_tag="NMB0114"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 122881..123093
/locus_tag="NMB0114"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(122899..122901,122911..122913,122923..122925,
122932..122934,122944..122946,122953..122955,
123010..123012,123034..123036,123043..123045,
123055..123057,123064..123066,123076..123078)
/locus_tag="NMB0114"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 122917..122919
/locus_tag="NMB0114"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 123232..123534
/locus_tag="NMB0114"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(123250..123252,123262..123264,123271..123273,
123349..123351,123355..123357,123361..123363,
123367..123372,123433..123444,123490..123492,
123496..123498,123511..123516,123520..123522)
/locus_tag="NMB0114"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 123262..123264
/locus_tag="NMB0114"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(123361..123363,123367..123369,123433..123435,
123439..123441)
/locus_tag="NMB0114"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 123554..124831
/gene="ntrX"
/locus_tag="NMB0115"
/db_xref="GeneID:902219"
CDS 123554..124831
/gene="ntrX"
/locus_tag="NMB0115"
/note="identified by similarity to EGAD:5624; match to
protein family HMM PF00072; match to protein family HMM
PF00158; match to protein family HMM PF02954; match to
protein family HMM TIGR01199"
/codon_start=1
/transl_table=11
/product="nitrogen assimilation regulatory protein NtrX"
/protein_id="NP_273173.1"
/db_xref="GI:15676043"
/db_xref="GeneID:902219"
/translation="MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRH
QARPAMVLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGAIDF
LEKPISLQKLLSAVENALKYGAAQTETGPVFDKLGNSAAIQEMNREVGAAVKCASPVL
LTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSR
NIQAGIAFIVGKAEHRRVRVVASGSRAAGSDGIACEEKLAELLSESVVRIPPLRMQHE
DIPFLIQGIACNVAESQKIAPASFSEEALAALTRYDWPGNFDQLQSVVATLLLEADGQ
EIGAGAVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSQ
VAQKVGLERTHLYRKLKQLGIGVSRRAGEKTEE"
misc_feature 123554..124816
/gene="ntrX"
/locus_tag="NMB0115"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:225114"
misc_feature 123572..123913
/gene="ntrX"
/locus_tag="NMB0115"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(123581..123586,123713..123715,123737..123739,
123800..123802,123857..123859,123866..123871)
/gene="ntrX"
/locus_tag="NMB0115"
/note="active site"
/db_xref="CDD:238088"
misc_feature 123713..123715
/gene="ntrX"
/locus_tag="NMB0115"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(123722..123727,123731..123739)
/gene="ntrX"
/locus_tag="NMB0115"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 123866..123874
/gene="ntrX"
/locus_tag="NMB0115"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 123959..>124093
/gene="ntrX"
/locus_tag="NMB0115"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cl17189"
/db_xref="CDD:247743"
misc_feature <124718..>124789
/gene="ntrX"
/locus_tag="NMB0115"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG3636; cl17681"
/db_xref="CDD:248235"
gene 124922..126115
/gene="dprA"
/locus_tag="NMB0116"
/db_xref="GeneID:902220"
CDS 124922..126115
/gene="dprA"
/locus_tag="NMB0116"
/note="identified by similarity to EGAD:27998; match to
protein family HMM PF02481; match to protein family HMM
TIGR00732"
/codon_start=1
/transl_table=11
/product="DNA processing protein DprA"
/protein_id="NP_273174.1"
/db_xref="GI:15676044"
/db_xref="GeneID:902220"
/translation="MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSAPAEQV
AALIRHKQALEAWRNAEKRALARQAAEAALEWEMRDGCRLMLLQDEDFPEMLTQGLTA
PPVLFLRGNVQLLHKPSAAIVGSRHATPQAMRIAKDFGKSLGGKGIPVVSGMASGIDT
AAHQGALQAEGGTIAVWGTGIDRIYPPVNKNLAYEIAEKGLIVSEFPIGTRPYAGNFP
RRNRLIAALSQVTLVVEAALESGSLITARLAAEMGREVMAVPGSIDNPHSKGCHKLIK
DGAKLVECLDDILNECPGLLQNTGASSYSINKGIPEKRITAVQTASDQLSLPEGKMPS
EKTENRPVGGSILDRMGFDPVHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRY
QRIRT"
misc_feature 124922..126106
/gene="dprA"
/locus_tag="NMB0116"
/note="Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion];
Region: Smf; COG0758"
/db_xref="CDD:223829"
misc_feature 125153..125794
/gene="dprA"
/locus_tag="NMB0116"
/note="DNA protecting protein DprA; Region: dprA;
TIGR00732"
/db_xref="CDD:129815"
gene 126141..126602
/locus_tag="NMB0117"
/db_xref="GeneID:902221"
CDS 126141..126602
/locus_tag="NMB0117"
/note="identified by similarity to EGAD:6532; match to
protein family HMM PF04361"
/codon_start=1
/transl_table=11
/product="smg protein"
/protein_id="NP_273175.1"
/db_xref="GI:15676045"
/db_xref="GeneID:902221"
/translation="MTEVIAYLIEHFQDFDTCPPPEDLGMLLEEAGFDTMEIGNTLMM
MEVLLNSSEFSAEPADSGALRVYSKEETDNLPQEVMGLMQYLIEEKAVSCEQREIIIH
ALMHIPGDEITVDTAKVLTLLLLWANKSELPVLVGDELMSALLLDNKPTMN"
misc_feature 126141..126599
/locus_tag="NMB0117"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: Smg; COG2922"
/db_xref="CDD:225474"
gene 126674..128980
/gene="topA"
/locus_tag="NMB0118"
/db_xref="GeneID:902222"
CDS 126674..128980
/gene="topA"
/locus_tag="NMB0118"
/EC_number="5.99.1.2"
/note="catalyzes the ATP-dependent breakage of
single-stranded DNA followed by passage and rejoining;
maintains net negative superhelicity"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase I"
/protein_id="NP_273176.1"
/db_xref="GI:15676046"
/db_xref="GeneID:902222"
/translation="MAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAV
DPDNGFAMKYQLISRNGKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKR
GLKNIKPQRVVFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWK
KIRRGLSAGRVQSPALRLICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGA
KLEQFDLPNEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGF
TTDRTMRTAQQLYEGIDVGQGAIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLP
SAAKQYKTKSKNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTP
AKFDQTTVDITVGKGVFRVTGQVQTFAGFLSVYEESSDDEEGEDSKKLPEMSEGDKLP
VDKLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFM
PTDTGDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPFIKQVE
EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGRFVACAGYPECSYTRNVNETAEE
AAERIAKAEAEQAELDGRECPKCGGRLVYKYSRTGSKFIGCVNYPKCKHVEPLEKPKD
TGVQCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEECLNCHWPVLTIKT
TKRWGVEKVCPQKECGWKEQIEPPAPKE"
misc_feature 126674..128713
/gene="topA"
/locus_tag="NMB0118"
/note="DNA topoisomerase I; Validated; Region: PRK06599"
/db_xref="CDD:235840"
misc_feature 126680..127060
/gene="topA"
/locus_tag="NMB0118"
/note="TOPRIM_TopoIA_TopoI: The topoisomerase-primase
(TORPIM) domain found in members of the type IA family of
DNA topoisomerases (Topo IA) similar to Escherichia coli
DNA topoisomerase I. Type IA DNA topoisomerases remove
(relax) negative supercoils in the...; Region:
TOPRIM_TopoIA_TopoI; cd03363"
/db_xref="CDD:173783"
misc_feature order(126698..126703,126710..126712,126917..126919,
126923..126925,126929..126931)
/gene="topA"
/locus_tag="NMB0118"
/note="active site"
/db_xref="CDD:173783"
misc_feature order(126719..126721,126920..126922,126926..126928,
126947..126952,126956..126961)
/gene="topA"
/locus_tag="NMB0118"
/note="interdomain interaction site; other site"
/db_xref="CDD:173783"
misc_feature order(126917..126919,126923..126925)
/gene="topA"
/locus_tag="NMB0118"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173783"
misc_feature 126926..126928
/gene="topA"
/locus_tag="NMB0118"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173783"
misc_feature 127073..128368
/gene="topA"
/locus_tag="NMB0118"
/note="DNA Topoisomerase, subtype IA; DNA-binding,
ATP-binding and catalytic domain of bacterial DNA
topoisomerases I and III, and eukaryotic DNA topoisomerase
III and eubacterial and archael reverse gyrases.
Topoisomerases clevage single or double stranded DNA...;
Region: TOP1Ac; cd00186"
/db_xref="CDD:238110"
misc_feature order(127073..127156,127169..127231)
/gene="topA"
/locus_tag="NMB0118"
/note="domain I; other site"
/db_xref="CDD:238110"
misc_feature order(127100..127105,127112..127114,127124..127126,
127136..127138,127529..127531,127541..127543,
127589..127591,128126..128131,128138..128143,
128147..128149,128159..128164)
/gene="topA"
/locus_tag="NMB0118"
/note="DNA binding groove [nucleotide binding]"
/db_xref="CDD:238110"
misc_feature order(127202..127204,127214..127216,128234..128236)
/gene="topA"
/locus_tag="NMB0118"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:238110"
misc_feature order(127244..127264,127394..127441,127844..127888,
127892..127948,128027..128059)
/gene="topA"
/locus_tag="NMB0118"
/note="domain II; other site"
/db_xref="CDD:238110"
misc_feature order(127442..127462,127466..127546,127571..127657,
127721..127747,127781..127843)
/gene="topA"
/locus_tag="NMB0118"
/note="domain III; other site"
/db_xref="CDD:238110"
misc_feature order(127475..127477,127487..127495,127724..127726,
127799..127801,127808..127810,127820..127822,
128120..128122,128126..128128,128192..128194)
/gene="topA"
/locus_tag="NMB0118"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:238110"
misc_feature order(127583..127585,127589..127591,127724..127726)
/gene="topA"
/locus_tag="NMB0118"
/note="catalytic site [active]"
/db_xref="CDD:238110"
misc_feature order(128060..128182,128192..128236,128252..128368)
/gene="topA"
/locus_tag="NMB0118"
/note="domain IV; other site"
/db_xref="CDD:238110"
misc_feature 128417..128530
/gene="topA"
/locus_tag="NMB0118"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 128591..128965
/gene="topA"
/locus_tag="NMB0118"
/note="Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair]; Region:
TopA; COG0551"
/db_xref="CDD:223625"
misc_feature 128594..128710
/gene="topA"
/locus_tag="NMB0118"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 128723..128842
/gene="topA"
/locus_tag="NMB0118"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
gene complement(129053..129748)
/locus_tag="NMB0119"
/db_xref="GeneID:902223"
CDS complement(129053..129748)
/locus_tag="NMB0119"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273177.1"
/db_xref="GI:15676047"
/db_xref="GeneID:902223"
/translation="MMKDLNLSNSLFKGYNDKHGLMICGYEWGWSKADEAAYVAGEYK
LPENKIDHTFANKSLYFGEQAKKWRYDNTIKNWFEMWGHPLDENGLGGAFEKSLVQTN
WAATQGNTIDNPDKFTQPEHIDNFLYHIEKLRPKVILFMGSRLADFLNNQNVLPRFEQ
LVGKQTKPLETVQKEFDGTRFNVKFQSFEDCEVVCFPHPSASRGLSYDYIALFAPEMN
RILSDFKTTRGFK"
gene complement(129768..130319)
/locus_tag="NMB0120"
/db_xref="GeneID:902224"
CDS complement(129768..130319)
/locus_tag="NMB0120"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273178.1"
/db_xref="GI:15676048"
/db_xref="GeneID:902224"
/translation="MEFLSLHPWWSFFIILTIILSYIGFCAHLHIQNRAVFFYSYRDV
TIIFLTPVILIALSYLIKNKEILSACILCITLIAFSWAWIITYRSNTKRFFLSLLIVW
GKLLLSTIVWAILAISLGLAVITGNSKRKKYERRDRHAERNEKAFIGALLVGFELSRN
LLNLCCLHKDFSTPSKNIEVNRS"
gene 130438..130815
/locus_tag="NMB0121"
/db_xref="GeneID:902225"
CDS 130438..130815
/locus_tag="NMB0121"
/note="identified by similarity to EGAD:28447; match to
protein family HMM PF01381"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273179.1"
/db_xref="GI:15676049"
/db_xref="GeneID:902225"
/translation="METHEKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNI
PRLEQLAQIFKIDMWDLLKSGGGGMVFQINEGDSGGDIALYASGDVSMKIEFLKMELK
HCKEMLEQKDKEIELLRKLTETV"
misc_feature 130450..130788
/locus_tag="NMB0121"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:224314"
misc_feature 130450..130620
/locus_tag="NMB0121"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature order(130459..130461,130471..130473,130546..130548)
/locus_tag="NMB0121"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(130468..130470,130543..130545)
/locus_tag="NMB0121"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature order(130489..130494,130525..130527,130534..130536,
130546..130551)
/locus_tag="NMB0121"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 130904..131473
/locus_tag="NMB0122"
/db_xref="GeneID:902226"
CDS 130904..131473
/locus_tag="NMB0122"
/note="identified by similarity to EGAD:7463; match to
protein family HMM PF03602; match to protein family HMM
TIGR00095"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273180.1"
/db_xref="GI:15676050"
/db_xref="GeneID:902226"
/translation="MAAGKHTKHSNRVRIIGGQCRGRKLSFTSADGLRPTPDSVREKL
FNWLGQDLTGKTVLDLFGGSGALGIEAASRNAKRVLISDNNRQTVQTLQKNSRELGLG
QVQIVFSDGIAYLKTVSEQFDVVFLDPPFAWQDWQILFDALKPCLNPRAFVYLEAGTL
PNIPDWLTEYREGKSGQSTFELRVFQVAE"
misc_feature 130940..131449
/locus_tag="NMB0122"
/note="Conserved hypothetical protein 95; Region:
Cons_hypoth95; pfam03602"
/db_xref="CDD:202698"
misc_feature 131069..131371
/locus_tag="NMB0122"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(131081..131101,131150..131155,131228..131236,
131285..131287)
/locus_tag="NMB0122"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 131596..131847
/locus_tag="NMB0123"
/db_xref="GeneID:902227"
CDS 131596..131847
/locus_tag="NMB0123"
/note="identified by similarity to EGAD:13273; match to
protein family HMM PF00037"
/codon_start=1
/transl_table=11
/product="ferredoxin, 4Fe-4S type"
/protein_id="NP_273181.1"
/db_xref="GI:15676051"
/db_xref="GeneID:902227"
/translation="MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGH
YDEPQCQQVCPVDCILIDEEHPETHDELMAKYEKIIQFK"
misc_feature 131620..131766
/locus_tag="NMB0123"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:221801"
gene 131944..132027
/gene="tRNA-Tyr-1"
/locus_tag="NMBt04"
/db_xref="GeneID:902228"
tRNA 131944..132027
/gene="tRNA-Tyr-1"
/locus_tag="NMBt04"
/product="tRNA-Tyr"
/db_xref="GeneID:902228"
gene 132058..132131
/gene="tRNA-Gly-1"
/locus_tag="NMBt05"
/db_xref="GeneID:902229"
tRNA 132058..132131
/gene="tRNA-Gly-1"
/locus_tag="NMBt05"
/product="tRNA-Gly"
/db_xref="GeneID:902229"
gene 132141..132215
/gene="tRNA-Thr-1"
/locus_tag="NMBt06"
/db_xref="GeneID:902230"
tRNA 132141..132215
/gene="tRNA-Thr-1"
/locus_tag="NMBt06"
/product="tRNA-Thr"
/db_xref="GeneID:902230"
gene 132264..133448
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/db_xref="GeneID:902231"
CDS 132264..133448
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/EC_number="3.6.5.3"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="NP_273182.1"
/db_xref="GI:15676052"
/db_xref="GeneID:902231"
/translation="MAKEKFERSKPHVNVGTIGHVDHGKTTLTAALTTILAKKFGGAA
KAYDQIDNAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGA
ILVCSAADGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAELLELVEMEIRDLLSS
YDFPGDDCPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPERAVDKPFLLPIEDV
FSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVG
VLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFR
TTDVTGAVTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSV
IA"
misc_feature 132264..133445
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:234596"
misc_feature 132294..132872
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 132318..132341
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(132321..132323,132327..132329,132339..132344,
132351..132353,132360..132365,132375..132377,
132459..132464,132516..132521,132588..132593,
132597..132608,132615..132617,132708..132710,
132720..132722,132798..132803)
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(132327..132344,132402..132404,132669..132674,
132678..132680,132783..132791)
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 132429..132461
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 132447..132449
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 132504..132515
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 132510..132566
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 132669..132680
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 132783..132791
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 132894..133154
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:239668"
misc_feature 133161..133430
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:239678"
misc_feature order(133197..133199,133203..133211,133263..133265,
133383..133391,133419..133421)
/gene="tufB"
/locus_tag="NMB0124"
/gene_synonym="tuf"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:239678"
gene 133455..133530
/gene="tRNA-Trp-1"
/locus_tag="NMBt07"
/db_xref="GeneID:902232"
tRNA 133455..133530
/gene="tRNA-Trp-1"
/locus_tag="NMBt07"
/product="tRNA-Trp"
/db_xref="GeneID:902232"
gene 133645..133923
/gene="secE"
/locus_tag="NMB0125"
/db_xref="GeneID:902233"
CDS 133645..133923
/gene="secE"
/locus_tag="NMB0125"
/note="forms a complex with SecY and SecG; SecYEG forms a
protein-conducting channel to which secA binds and
translocates targeted polypeptides across the cytoplasmic
membrane, a process driven by ATP and a proton-motive
force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="NP_273183.1"
/db_xref="GI:15676053"
/db_xref="GeneID:902233"
/translation="MTEHTPEKKNVKVDQLVVQDKESASNSGKEGFFAYFSNSWSEFK
KVVWPKREDAVRMTVFVIVFVAVLSIFIYAADTAISWLFFDVLLRREG"
misc_feature 133681..133896
/gene="secE"
/locus_tag="NMB0125"
/note="Preprotein translocase subunit SecE [Intracellular
trafficking and secretion]; Region: SecE; COG0690"
/db_xref="CDD:223762"
gene 133925..134461
/gene="nusG"
/locus_tag="NMB0126"
/db_xref="GeneID:902234"
CDS 133925..134461
/gene="nusG"
/locus_tag="NMB0126"
/note="Modulates Rho-dependent transcription termination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusG"
/protein_id="NP_273184.1"
/db_xref="GI:15676054"
/db_xref="GeneID:902234"
/translation="MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEK
VVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQR
EAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQI
FGRETPVELEFSQVEKIN"
misc_feature 133925..134458
/gene="nusG"
/locus_tag="NMB0126"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 133934..134257
/gene="nusG"
/locus_tag="NMB0126"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(133943..133945,134045..134047,134105..134107,
134114..134116,134120..134122,134219..134221,
134243..134245)
/gene="nusG"
/locus_tag="NMB0126"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 134285..134452
/gene="nusG"
/locus_tag="NMB0126"
/note="NusG contains an NGN domain at its N-terminus and
KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
/db_xref="CDD:240515"
misc_feature order(134321..134335,134342..134344,134378..134380,
134405..134413,134417..134428,134438..134443)
/gene="nusG"
/locus_tag="NMB0126"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
misc_feature 134321..134332
/gene="nusG"
/locus_tag="NMB0126"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
gene 134562..134996
/gene="rplK"
/locus_tag="NMB0127"
/db_xref="GeneID:902235"
CDS 134562..134996
/gene="rplK"
/locus_tag="NMB0127"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="NP_273185.1"
/db_xref="GI:15676055"
/db_xref="GeneID:902235"
/translation="MAKKIIGYIKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNA
ATQGMEPGLPIPVVITAFADKSFTFVMKTPPASILLKKAAGLQKGSSNPLTNKVGKLT
RAQLEEIAKTKDPDLTAADLDAAVRTIAGSARSMGLDVEGVV"
misc_feature 134562..134987
/gene="rplK"
/locus_tag="NMB0127"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:234661"
misc_feature 134586..134981
/gene="rplK"
/locus_tag="NMB0127"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(134589..134591,134649..134651,134784..134792,
134802..134804,134823..134825,134898..134900,
134913..134921,134931..134933,134940..134945,
134952..134957,134961..134969)
/gene="rplK"
/locus_tag="NMB0127"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(134589..134591,134733..134735,134739..134750,
134760..134762,134766..134771,134901..134906,
134913..134918)
/gene="rplK"
/locus_tag="NMB0127"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(134637..134639,134649..134651)
/gene="rplK"
/locus_tag="NMB0127"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(134841..134843,134850..134852)
/gene="rplK"
/locus_tag="NMB0127"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 134996..135691
/gene="rplA"
/locus_tag="NMB0128"
/db_xref="GeneID:902236"
CDS 134996..135691
/gene="rplA"
/locus_tag="NMB0128"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="NP_273186.1"
/db_xref="GI:15676056"
/db_xref="GeneID:902236"
/translation="MAKVSKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDV
SFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAA
EIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
VQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTM
GLGIRVDTSSVNN"
misc_feature 135062..135667
/gene="rplA"
/locus_tag="NMB0128"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:238235"
misc_feature order(135101..135109,135116..135118,135122..135124,
135128..135130,135134..135136,135497..135499,
135503..135505,135509..135511,135647..135652,
135656..135658)
/gene="rplA"
/locus_tag="NMB0128"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238235"
gene 135760..135903
/locus_tag="NMB0129"
/db_xref="GeneID:902237"
CDS 135760..135903
/locus_tag="NMB0129"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273187.1"
/db_xref="GI:15676057"
/db_xref="GeneID:902237"
/translation="MSKTVGIVRFNRNCPTQTVVLKHIARLLVRCLFRLPRWWDIVLV
SCL"
gene 135921..136421
/gene="rplJ"
/locus_tag="NMB0130"
/db_xref="GeneID:902238"
CDS 135921..136421
/gene="rplJ"
/locus_tag="NMB0130"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="NP_273188.1"
/db_xref="GI:15676058"
/db_xref="GeneID:902238"
/translation="MSLNIETKKVAVEEISAAIANAQTLVVAEYRGISVSSMTELRAN
ARKEGVYLRVLKNTLARRAVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKD
DKIVVKAGSYNGEVMNAAQVAELASIPSREELLSKLLFVMQAPVSGFARGLAALAEKK
AGEEAA"
misc_feature 135930..136373
/gene="rplJ"
/locus_tag="NMB0130"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:240223"
misc_feature order(135942..135947,135954..135956,136086..136097,
136104..136106)
/gene="rplJ"
/locus_tag="NMB0130"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:240223"
misc_feature order(136185..136187,136254..136256,136263..136265,
136311..136313,136320..136325,136332..136337,
136341..136358,136362..136370)
/gene="rplJ"
/locus_tag="NMB0130"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:240223"
gene 136479..136850
/gene="rplL"
/locus_tag="NMB0131"
/db_xref="GeneID:902239"
CDS 136479..136850
/gene="rplL"
/locus_tag="NMB0131"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="NP_273189.1"
/db_xref="GI:15676059"
/db_xref="GeneID:902239"
/translation="MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPA
GAGAADAEEKTEFDVVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVS
KAEAEDIQKQLEEAGAKVEIK"
misc_feature 136485..136844
/gene="rplL"
/locus_tag="NMB0131"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(136485..136487,136524..136532,136539..136544,
136551..136553,136560..136562,136605..136607,
136614..136619,136623..136631,136641..136646,
136707..136709,136713..136718,136722..136724,
136728..136733,136773..136778,136782..136784,
136791..136793)
/gene="rplL"
/locus_tag="NMB0131"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(136494..136496,136503..136505,136515..136517,
136554..136556,136569..136571)
/gene="rplL"
/locus_tag="NMB0131"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(136536..136538,136545..136550,136560..136562,
136569..136571)
/gene="rplL"
/locus_tag="NMB0131"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(136680..136685,136692..136697,136704..136706,
136725..136730,136737..136739)
/gene="rplL"
/locus_tag="NMB0131"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(136683..136685,136695..136697,136704..136706,
136725..136730,136737..136739)
/gene="rplL"
/locus_tag="NMB0131"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(136683..136685,136692..136697,136704..136706)
/gene="rplL"
/locus_tag="NMB0131"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 137034..141218
/gene="rpoB"
/locus_tag="NMB0132"
/db_xref="GeneID:902240"
CDS 137034..141218
/gene="rpoB"
/locus_tag="NMB0132"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="NP_273190.1"
/db_xref="GI:15676060"
/db_xref="GeneID:902240"
/translation="MCMNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLE
NAFDKRTDDGLQAAFNSIFPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPL
RARIRLVILDKEASKPTVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPG
VFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKA
LGYNNEQILDIFYDKETFYLSSNGVQTDLVADRLKGETAKVDILDKEGNVLVAKGKRI
TAKNIRDITNAGLTRLDVEPESLLGKALAADLIDSETGEVLASANDEITEELLAKFDI
NGVKEITTLYINELDQGAYISNTLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLF
NRLFFSEDSYDLSRVGRMKFNTRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLS
VEDIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERL
NQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGG
LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVI
DGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYM
DVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVD
SATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNLVKFTRSNQSTNINQRP
AVKAGDVLQRGDLVADGASTDFGELALGQNMTIAFMPWNGYNYEDSILISEKVAADDR
YTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYIGAEVEAGDVLVG
KVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTREGIQRDK
RAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAKGSEITTEY
LAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQGDELQPG
VQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGV
PSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDLDAL
TDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQI
TLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQ
RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVL
VKEIRSLGLDIDLERY"
misc_feature 137040..>139931
/gene="rpoB"
/locus_tag="NMB0132"
/note="DNA-directed RNA polymerase subunit beta; Reviewed;
Region: rpoB; PRK00405"
/db_xref="CDD:234749"
misc_feature 137118..>137726
/gene="rpoB"
/locus_tag="NMB0132"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl17585"
/db_xref="CDD:248139"
misc_feature <138162..138482
/gene="rpoB"
/locus_tag="NMB0132"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:218151"
misc_feature <138384..>139253
/gene="rpoB"
/locus_tag="NMB0132"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature 139266..>139943
/gene="rpoB"
/locus_tag="NMB0132"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:215994"
misc_feature <140283..141209
/gene="rpoB"
/locus_tag="NMB0132"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature order(140325..140327,140331..140333,140406..140414,
140421..140423,140427..140432,140832..140855,
140859..140861)
/gene="rpoB"
/locus_tag="NMB0132"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(140379..140381,140385..140387,140391..140393,
140457..140459,140463..140465,140472..140474,
140481..140483,140496..140498,140508..140510,
140712..140714,140829..140831,140853..140861,
140865..140867,140904..140906,140913..140921,
140925..140930,140991..140999,141009..141011,
141015..141020,141024..141026,141030..141047,
141051..141068,141078..141080,141147..141149,
141159..141161,141165..141167,141171..141176,
141180..141182,141186..141197,141201..141203,
141207..141209)
/gene="rpoB"
/locus_tag="NMB0132"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(140403..140405,140835..140837)
/gene="rpoB"
/locus_tag="NMB0132"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(140406..140408,140445..140447,140526..140531,
140535..140537,140817..140819,140868..140870)
/gene="rpoB"
/locus_tag="NMB0132"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
gene 141375..145550
/gene="rpoC"
/locus_tag="NMB0133"
/db_xref="GeneID:902241"
CDS 141375..145550
/gene="rpoC"
/locus_tag="NMB0133"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="NP_273191.1"
/db_xref="GI:15676061"
/db_xref="GeneID:902241"
/translation="MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPE
TINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRE
RMGHIELAAPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQ
LLTEDDYYNKLDEYGDDFDAKMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKK
IAKRLKVLEAFHRSGMKLEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN
RNNRLKRLLELHAPDIIVRNEKRMLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIK
GKGGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIFHKLEKQGL
ASTVKAAKKLVEQEVPEVWDILEEVIREHPIMLNRAPTLHRLGIQAFEPILIEGKAIQ
LHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLSPANGEPIIVPSQDI
VLGLYYMTRDRINAKGEGSLFADVKEVHRAYHTKQVELGTKITVRLREWVKNEAGEFE
PVVNRYETTVGRALLSEILPKGLPFEYVNKALKKKEISKLINASFRLCGLRDTVIFAD
HLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEANAEVKEIEDQYRQGLVTNGERYN
KVVDIWGRAGDKIAKAMMDNLSKQKVIDRAGNEVDQESFNSIYMMADSGARGSAAQIK
QLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHGARKGLADTALKTANSGYL
TRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDRILGRVTASDVVDPSSG
ETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHCYGRDLARGKLVNAG
EAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTARFSSQMRYVANN
KGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTLATWDPHTRPM
ITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSSSASKLLRPTVKLLDEN
GVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVA
ELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIVTDVDGVAYETLISKEKQILVHDG
QVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQ
MLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQE
VEQETAETQVTDE"
misc_feature 141417..143933
/gene="rpoC"
/locus_tag="NMB0133"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:223164"
misc_feature 141420..142406
/gene="rpoC"
/locus_tag="NMB0133"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:218370"
misc_feature 142083..142913
/gene="rpoC"
/locus_tag="NMB0133"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:214767"
misc_feature 142845..143312
/gene="rpoC"
/locus_tag="NMB0133"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:218361"
misc_feature 143397..143672
/gene="rpoC"
/locus_tag="NMB0133"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:218372"
misc_feature 143676..>144467
/gene="rpoC"
/locus_tag="NMB0133"
/note="RNA polymerase Rpb1, domain 5; Region:
RNA_pol_Rpb1_5; pfam04998"
/db_xref="CDD:147266"
misc_feature 144099..>144197
/gene="rpoC"
/locus_tag="NMB0133"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 144117..144119
/gene="rpoC"
/locus_tag="NMB0133"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature <145026..145472
/gene="rpoC"
/locus_tag="NMB0133"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(145314..145316,145359..145364)
/gene="rpoC"
/locus_tag="NMB0133"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(145404..145406,145422..145424,145440..145442,
145449..145454,145464..145466)
/gene="rpoC"
/locus_tag="NMB0133"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene 145842..146099
/locus_tag="NMB0134"
/db_xref="GeneID:902242"
CDS 145842..146099
/locus_tag="NMB0134"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273192.1"
/db_xref="GI:15676062"
/db_xref="GeneID:902242"
/translation="MKPRNLFFAGCLLTSATFAEDIGVPVELINVGNRIAMPSEGESL
ALLPFAEDVPPVRDAMPSEVPKSAAGGDVRGDRMRMPINIG"
gene 146096..146245
/locus_tag="NMB0135"
/db_xref="GeneID:902243"
CDS 146096..146245
/locus_tag="NMB0135"
/note="identified by similarity to GP:3414689; match to
protein family HMM PF04575"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273193.1"
/db_xref="GI:15676063"
/db_xref="GeneID:902243"
/translation="MSAALWHKKLSWKGFTPQINFRYNKINSNMPAFYSRSGKERFVS
IEKTY"
misc_feature <146099..146242
/locus_tag="NMB0135"
/note="Protein of unknown function (DUF560); Region:
DUF560; pfam04575"
/db_xref="CDD:218155"
gene 146424..146795
/gene="rpsL"
/locus_tag="NMB0136"
/db_xref="GeneID:902244"
CDS 146424..146795
/gene="rpsL"
/locus_tag="NMB0136"
/note="interacts with and stabilizes bases of the 16S rRNA
that are involved in tRNA selection in the A site and with
the mRNA backbone; located at the interface of the 30S and
50S subunits, it traverses the body of the 30S subunit
contacting proteins on the other side; mutations in the
S12 gene confer streptomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="NP_273194.1"
/db_xref="GI:15676064"
/db_xref="GeneID:902244"
/translation="MPTINQLVRKGRQKPVYVNKVPALEACPQKRGVCTRVYTTTPKK
PNSALRKVCKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSL
DTAGVKDRKQARSKYGAKRPK"
misc_feature 146430..146753
/gene="rpsL"
/locus_tag="NMB0136"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:239466"
misc_feature order(146433..146438,146442..146447,146454..146459)
/gene="rpsL"
/locus_tag="NMB0136"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:239466"
misc_feature 146433..146435
/gene="rpsL"
/locus_tag="NMB0136"
/note="S8 interaction site; other site"
/db_xref="CDD:239466"
misc_feature order(146457..146465,146499..146501,146505..146510,
146514..146516,146559..146564,146568..146576,
146595..146597,146619..146621,146628..146633,
146670..146675,146685..146690,146751..146753)
/gene="rpsL"
/locus_tag="NMB0136"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(146550..146555,146685..146687)
/gene="rpsL"
/locus_tag="NMB0136"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:239466"
misc_feature 146553..146558
/gene="rpsL"
/locus_tag="NMB0136"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(146556..146573,146631..146657)
/gene="rpsL"
/locus_tag="NMB0136"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:239466"
gene 146913..147383
/gene="rpsG"
/locus_tag="NMB0137"
/db_xref="GeneID:902245"
CDS 146913..147383
/gene="rpsG"
/locus_tag="NMB0137"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="NP_273195.1"
/db_xref="GI:15676065"
/db_xref="GeneID:902245"
/translation="MPRRREVPKRDVLPDPKFGSVELTKFMNVLMIDGKKSVAERIVY
GALEQIEKKTGKVAIEVFNEAIANAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAMR
WVRDAARKRGEKSMDLRLAGELIDASEGRGGALKKREEVHRMAEANKAFSHFRF"
misc_feature 146913..147380
/gene="rpsG"
/locus_tag="NMB0137"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:235398"
gene 147402..149507
/gene="fusA"
/locus_tag="NMB0138"
/db_xref="GeneID:902246"
CDS 147402..149507
/gene="fusA"
/locus_tag="NMB0138"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="NP_273196.1"
/db_xref="GI:15676066"
/db_xref="GeneID:902246"
/translation="MARKTPISLYRNIGISAHIDAGKTTTTERILFYTGLTHKLGEVH
DGAATTDYMEQEQERGITITSAAVTSYWSGMAKQFPEHRFNIIDTPGHVDFTVEVERS
MRVLDGAVMVYCAVGGVQPQSETVWRQANKYQVPRLAFVNKMDRQGANFFRVVEQMKT
RLRANPVPIVIPVGAEDNFSGVVDLLKMKSIIWNEVDKGTTFTYGDIPAELVETAEEW
RQNMIEAAAEASEELMDKYLGGDELTEEEIVGALRQRTLAGEIQPMLCGSAFKNKGVQ
RMLDAVVELLPAPTDIPPVQGVNPNTEEADSRQASDEEKFSALAFKMLNDKYVGQLTF
IRVYSGVVKSGDTVLNSVKGTRERIGRLVQMTAADRTEIEEVRAGDIAAAIGLKDVTT
GETLCAESAPIILERMEFPEPVIHIAVEPKTKADQEKMGIALNRLAKEDPSFRVRTDE
ESGQTIISGMGELHLEIIVDRMKREFGVEANIGAPQVAYRETIRKAVKAEYKHAKQSG
GKGQYGHVVIEMEPMEPGGEGYEFIDEIKGGVIPREFIPSVDKGIRDTLPNGIVAGYP
VVDVRIRLVFGSYHDVDSSQLAFELAASQAFKEGMRQASPALLEPIMAVEVETPEEYM
GDVMGDLNRRRGVVLGMDDDGIGGKKVRAEVPLAEMFGYSTDLRSATQGRATYSMEFK
KYSEAPAHIAAAVTEARKG"
misc_feature 147402..149504
/gene="fusA"
/locus_tag="NMB0138"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:234569"
misc_feature 147435..148268
/gene="fusA"
/locus_tag="NMB0138"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 147450..147473
/gene="fusA"
/locus_tag="NMB0138"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(147453..147455,147459..147461,147471..147476,
147483..147485,147492..147497,147597..147602,
147675..147680,147747..147752,147858..147860,
147870..147872)
/gene="fusA"
/locus_tag="NMB0138"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(147459..147461,147465..147476,147825..147830,
147834..147836,148203..148211)
/gene="fusA"
/locus_tag="NMB0138"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 147540..147599
/gene="fusA"
/locus_tag="NMB0138"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 147585..147587
/gene="fusA"
/locus_tag="NMB0138"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 147663..147674
/gene="fusA"
/locus_tag="NMB0138"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 147669..147725
/gene="fusA"
/locus_tag="NMB0138"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 147825..147836
/gene="fusA"
/locus_tag="NMB0138"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 148203..148211
/gene="fusA"
/locus_tag="NMB0138"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 148347..148592
/gene="fusA"
/locus_tag="NMB0138"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:239755"
misc_feature 148866..149216
/gene="fusA"
/locus_tag="NMB0138"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:238715"
misc_feature 149229..149465
/gene="fusA"
/locus_tag="NMB0138"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:239683"
gene 149593..150777
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/db_xref="GeneID:902247"
CDS 149593..150777
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/EC_number="3.6.5.3"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="NP_273197.1"
/db_xref="GI:15676067"
/db_xref="GeneID:902247"
/translation="MAKEKFERSKPHVNVGTIGHVDHGKTTLTAALTTILSKKFGGAA
KAYDQIDNAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGA
ILVCSAADGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAELLELVEMEIRDLLSS
YDFPGDDCPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPERAVDKPFLLPIEDV
FSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVG
VLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFR
TTDVTGAVTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSV
IA"
misc_feature 149593..150774
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:234596"
misc_feature 149623..150201
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 149647..149670
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(149650..149652,149656..149658,149668..149673,
149680..149682,149689..149694,149704..149706,
149788..149793,149845..149850,149917..149922,
149926..149937,149944..149946,150037..150039,
150049..150051,150127..150132)
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(149656..149673,149731..149733,149998..150003,
150007..150009,150112..150120)
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 149758..149790
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 149776..149778
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 149833..149844
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 149839..149895
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 149998..150009
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 150112..150120
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 150223..150483
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:239668"
misc_feature 150490..150759
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:239678"
misc_feature order(150526..150528,150532..150540,150592..150594,
150712..150720,150748..150750)
/gene="tufA"
/locus_tag="NMB0139"
/gene_synonym="tuf"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:239678"
gene 150795..151106
/gene="rpsJ"
/locus_tag="NMB0140"
/gene_synonym="nusE"
/db_xref="GeneID:902248"
CDS 150795..151106
/gene="rpsJ"
/locus_tag="NMB0140"
/gene_synonym="nusE"
/note="NusE; involved in assembly of the 30S subunit; in
the ribosome, this protein is involved in the binding of
tRNA; in Escherichia coli this protein was also found to
be involved in transcription antitermination; NusB/S10
heterodimers bind boxA sequences in the leader RNA of rrn
operons which is required for antitermination; binding of
NusB/S10 to boxA nucleates assembly of the antitermination
complex"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S10"
/protein_id="NP_273198.1"
/db_xref="GI:15676068"
/db_xref="GeneID:902248"
/translation="MANQKIRIRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPT
KIERFNILRSPHVNKTSREQLEIRTHLRLMDIVDWTDKTTDALMKLDLPAGVDVEIKV
Q"
misc_feature 150795..151100
/gene="rpsJ"
/locus_tag="NMB0140"
/gene_synonym="nusE"
/note="30S ribosomal protein S10; Reviewed; Region: rpsJ;
PRK00596"
/db_xref="CDD:179076"
gene 151248..151613
/locus_tag="NMB0141"
/db_xref="GeneID:903207"
CDS 151248..151613
/locus_tag="NMB0141"
/note="identified by similarity to GP:3901097"
/codon_start=1
/transl_table=11
/product="transposase, truncation"
/protein_id="NP_273199.1"
/db_xref="GI:15677986"
/db_xref="GeneID:903207"
/translation="MIAKHIDRFPLLKLDRVIDWQPIEQYLNRQRTRYLRDHRGRPAY
PLLSMFKAVLLGQWHSLSDPELEHSLITRIDFNLFCRFDELSIPDYSHQPYSGLSEKD
AYAVMTGYRPVKRVRPYAV"
misc_feature 151365..>151520
/locus_tag="NMB0141"
/note="Transposase domain (DUF772); Region: DUF772;
pfam05598"
/db_xref="CDD:203284"
misc_feature 151401..>151541
/locus_tag="NMB0141"
/note="Transposase and inactivated derivatives, IS5 family
[DNA replication, recombination, and repair]; Region:
COG3039"
/db_xref="CDD:225581"
gene 151784..152428
/gene="rplC"
/locus_tag="NMB0142"
/db_xref="GeneID:902249"
CDS 151784..152428
/gene="rplC"
/locus_tag="NMB0142"
/note="binds directly near the 3' end of the 23S rRNA,
where it nucleates assembly of the 50S subunit; essential
for peptidyltransferase activity; mutations in this gene
confer resistance to tiamulin"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L3"
/protein_id="NP_273200.1"
/db_xref="GI:15676069"
/db_xref="GeneID:902249"
/translation="MTLGLVGRKVGMTRVFDEQGVSVPVTVLDMSANRVTQVKSKDTD
GYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS
MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFP
GKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVGA"
misc_feature 151784..152425
/gene="rplC"
/locus_tag="NMB0142"
/note="50S ribosomal protein L3; Validated; Region: rplC;
PRK00001"
/db_xref="CDD:234564"
gene 152428..153048
/gene="rplD"
/locus_tag="NMB0143"
/db_xref="GeneID:902250"
CDS 152428..153048
/gene="rplD"
/locus_tag="NMB0143"
/note="L4 is important during the early stages of 50S
assembly; it initially binds near the 5' end of the 23S
rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L4"
/protein_id="NP_273201.1"
/db_xref="GI:15676070"
/db_xref="GeneID:902250"
/translation="MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANAR
SGNRAQKTRAEVKHSTKKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVN
RKMYRAGMATILSQLTRDERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTKQLDE
NVYLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQLEEQWV"
misc_feature 152428..153042
/gene="rplD"
/locus_tag="NMB0143"
/note="50S ribosomal protein L4; Provisional; Region:
rplD; PRK05319"
/db_xref="CDD:235404"
gene 153045..153359
/gene="rplW"
/locus_tag="NMB0144"
/db_xref="GeneID:902251"
CDS 153045..153359
/gene="rplW"
/locus_tag="NMB0144"
/note="binds third domain of 23S rRNA and protein L29;
part of exit tunnel"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L23"
/protein_id="NP_273202.1"
/db_xref="GI:15676071"
/db_xref="GeneID:902251"
/translation="MNQQRLTQVILAPIVSEKSNVLAEKRNQMTFKVLANATKPEIKA
AVELLFGVQVADVTTVTIKGKVKRFGRTLGRRSDVKKAYVSLAAGQELDLEAAAAAAD
KE"
misc_feature 153063..153299
/gene="rplW"
/locus_tag="NMB0144"
/note="50S ribosomal protein L23; Reviewed; Region: rplW;
PRK05738"
/db_xref="CDD:235586"
gene 153365..154198
/gene="rplB"
/locus_tag="NMB0145"
/db_xref="GeneID:902252"
CDS 153365..154198
/gene="rplB"
/locus_tag="NMB0145"
/note="one of the primary rRNA-binding proteins; required
for association of the 30S and 50S subunits to form the
70S ribosome, for tRNA binding and peptide bond formation"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L2"
/protein_id="NP_273203.1"
/db_xref="GI:15676072"
/db_xref="GeneID:902252"
/translation="MAIVKMKPTSAGRRGMVRVVTEGLYKGAPYAPLLEKKNSTAGRN
NNGHITTRHKGGGHKHHYRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERR
YIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGA
SAVLLAKEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIRP
TVRGVVMNPVDHPHGGGEGRTGEAREPVSPWGTPAKGYRTRNNKRTDNMIVRRRYSNK
G"
misc_feature 153365..154180
/gene="rplB"
/locus_tag="NMB0145"
/note="50S ribosomal protein L2; Validated; Region: rplB;
PRK09374"
/db_xref="CDD:236488"
misc_feature 153488..153718
/gene="rplB"
/locus_tag="NMB0145"
/note="Ribosomal Proteins L2, RNA binding domain; Region:
Ribosomal_L2; pfam00181"
/db_xref="CDD:109247"
misc_feature 153734..154120
/gene="rplB"
/locus_tag="NMB0145"
/note="Ribosomal Proteins L2, C-terminal domain; Region:
Ribosomal_L2_C; pfam03947"
/db_xref="CDD:202823"
gene 154205..154483
/gene="rpsS"
/locus_tag="NMB0146"
/db_xref="GeneID:902253"
CDS 154205..154483
/gene="rpsS"
/locus_tag="NMB0146"
/note="protein S19 forms a complex with S13 that binds
strongly to the 16S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S19"
/protein_id="NP_273204.1"
/db_xref="GI:15676073"
/db_xref="GeneID:902253"
/translation="MARSLKKGPYVDLHLLKKVDAARASNDKRPIKTWSRRSTILPDF
IGLTIAVHNGRTHVPVFISDNMVGHKLGEFSLTRTFKGHLADKKAKKK"
misc_feature 154205..154462
/gene="rpsS"
/locus_tag="NMB0146"
/note="30S ribosomal protein S19; Reviewed; Region: rpsS;
PRK00357"
/db_xref="CDD:178985"
gene 154492..154821
/gene="rplV"
/locus_tag="NMB0147"
/db_xref="GeneID:902254"
CDS 154492..154821
/gene="rplV"
/locus_tag="NMB0147"
/note="binds specifically to 23S rRNA during the early
stages of 50S assembly; makes contact with all 6 domains
of the 23S rRNA in the assembled 50S subunit and ribosome;
mutations in this gene result in erythromycin resistance;
located near peptidyl-transferase center"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L22"
/protein_id="NP_273205.1"
/db_xref="GI:15676074"
/db_xref="GeneID:902254"
/translation="MRVNAQHKNARISAQKARLVADLIRGKDVAQALNILAFSPKKGA
ELIKKVLESAIANAEHNNGADIDELKVVTIFVDKGPSLKRFQARAKGRGNRIEKQTCH
INVTVGN"
misc_feature 154498..154812
/gene="rplV"
/locus_tag="NMB0147"
/note="Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that interacts
with all six domains of 23S rRNA, and is one of the
proteins important for directing the proper...; Region:
Ribosomal_L22; cd00336"
/db_xref="CDD:238205"
misc_feature order(154498..154503,154567..154575,154579..154584,
154588..154593,154654..154671,154696..154713,
154807..154812)
/gene="rplV"
/locus_tag="NMB0147"
/note="putative translocon binding site; other site"
/db_xref="CDD:238205"
misc_feature order(154507..154509,154513..154515,154522..154524,
154528..154536,154543..154545,154555..154557,
154564..154566,154648..154650,154660..154662,
154669..154671,154708..154710,154714..154722,
154726..154728,154735..154737,154771..154788)
/gene="rplV"
/locus_tag="NMB0147"
/note="protein-rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238205"
gene 154831..155523
/gene="rpsC"
/locus_tag="NMB0148"
/db_xref="GeneID:902255"
CDS 154831..155523
/gene="rpsC"
/locus_tag="NMB0148"
/note="forms a complex with S10 and S14; binds the lower
part of the 30S subunit head and the mRNA in the complete
ribosome to position it for translation"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S3"
/protein_id="NP_273206.1"
/db_xref="GI:15676075"
/db_xref="GeneID:902255"
/translation="MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLR
QKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVN
IEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGA
DIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSKPEHESK
QRKAGRRNAAAN"
misc_feature 154831..155520
/gene="rpsC"
/locus_tag="NMB0148"
/note="30S ribosomal protein S3; Reviewed; Region: rpsC;
PRK00310"
/db_xref="CDD:234722"
misc_feature 154834..155157
/gene="rpsC"
/locus_tag="NMB0148"
/note="K homology RNA-binding (KH) domain of the
prokaryotic 30S small ribosomal subunit protein S3. S3 is
part of the head region of the 30S ribosomal subunit and
is believed to interact with mRNA as it threads its way
from the latch into the channel. The KH...; Region:
30S_S3_KH; cd02412"
/db_xref="CDD:239095"
misc_feature 155062..155073
/gene="rpsC"
/locus_tag="NMB0148"
/note="G-X-X-G motif; other site"
/db_xref="CDD:239095"
misc_feature 155188..155436
/gene="rpsC"
/locus_tag="NMB0148"
/note="Ribosomal protein S3, C-terminal domain; Region:
Ribosomal_S3_C; pfam00189"
/db_xref="CDD:215779"
gene 155507..155923
/gene="rplP"
/locus_tag="NMB0149"
/db_xref="GeneID:902256"
CDS 155507..155923
/gene="rplP"
/locus_tag="NMB0149"
/note="located in the peptidyl transferase center and may
be involved in peptidyl transferase activity; similar to
archaeal L10e"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L16"
/protein_id="NP_273207.1"
/db_xref="GI:15676076"
/db_xref="GeneID:902256"
/translation="MLQPTRLKYRKQQKGRNTGIATRGNKVSFGEFGLKAVGRGRLTA
RQIEAARRAMTRHIKRGGRIWIRVFPDKPITEKPIQVRMGGGKGNVEYYIAEIKPGKV
LYEMDGVPEELAREAFELAAAKLPIPTTFVVRQVGQ"
misc_feature 155573..>155836
/gene="rplP"
/locus_tag="NMB0149"
/note="Ribosomal_L16_L10e: L16 is an essential protein in
the large ribosomal subunit of bacteria, mitochondria, and
chloroplasts. Large subunits that lack L16 are defective
in peptidyl transferase activity, peptidyl-tRNA hydrolysis
activity, association with...; Region: Ribosomal_L16_L10e;
cd01433"
/db_xref="CDD:238714"
misc_feature order(155573..155575,155579..155584,155591..155593,
155639..155644,155651..155653,155660..155662,
155672..155674,155681..155683,155699..155707,
155711..155713,155717..155719,155729..155734,
155753..155767,155807..155809)
/gene="rplP"
/locus_tag="NMB0149"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238714"
misc_feature 155618..155623
/gene="rplP"
/locus_tag="NMB0149"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:238714"
misc_feature order(155654..155662,155669..155674)
/gene="rplP"
/locus_tag="NMB0149"
/note="putative antibiotic binding site [chemical
binding]; other site"
/db_xref="CDD:238714"
misc_feature order(155681..155683,155690..155695,155699..155701,
155825..155827)
/gene="rplP"
/locus_tag="NMB0149"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:238714"
misc_feature order(155747..155752,155759..155764)
/gene="rplP"
/locus_tag="NMB0149"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:238714"
gene 155923..156114
/gene="rpmC"
/locus_tag="NMB0150"
/db_xref="GeneID:902257"
CDS 155923..156114
/gene="rpmC"
/locus_tag="NMB0150"
/note="one of the stabilizing components for the large
ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L29"
/protein_id="NP_273208.1"
/db_xref="GI:15676077"
/db_xref="GeneID:902257"
/translation="MKANELKDKSVEQLNADLLDLLKAQFGLRMQNATGQLGKPSELK
RVRRDIARIKTVLTEKGAK"
misc_feature 155932..156102
/gene="rpmC"
/locus_tag="NMB0150"
/note="Ribosomal L29 protein/HIP. L29 is a protein of the
large ribosomal Subunit. A homolog, called heparin/heparan
sulfate interacting protein (HIP), has also been
identified in mammals. L29 is located on the surface of
the large ribosomal subunit, where it...; Region:
Ribosomal_L29_HIP; cd00427"
/db_xref="CDD:238243"
misc_feature order(155932..155934,155941..155943,156043..156045,
156073..156078,156082..156087,156097..156099)
/gene="rpmC"
/locus_tag="NMB0150"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238243"
misc_feature order(155932..155940,155944..155946,155956..155961,
155965..155970,155977..155982,155989..155994,
156001..156003,156010..156015,156037..156039,
156046..156048,156058..156060,156067..156072,
156079..156084,156091..156093)
/gene="rpmC"
/locus_tag="NMB0150"
/note="putative translocon interaction site; other site"
/db_xref="CDD:238243"
misc_feature order(155980..155982,155992..155994,156001..156003,
156013..156015,156058..156060)
/gene="rpmC"
/locus_tag="NMB0150"
/note="signal recognition particle (SRP54) interaction
site; other site"
/db_xref="CDD:238243"
misc_feature order(155998..156000,156007..156012)
/gene="rpmC"
/locus_tag="NMB0150"
/note="L23 interface [polypeptide binding]; other site"
/db_xref="CDD:238243"
misc_feature 156019..156024
/gene="rpmC"
/locus_tag="NMB0150"
/note="trigger factor interaction site; other site"
/db_xref="CDD:238243"
gene 156114..156377
/gene="rpsQ"
/locus_tag="NMB0151"
/db_xref="GeneID:902258"
CDS 156114..156377
/gene="rpsQ"
/locus_tag="NMB0151"
/note="primary binding protein; helps mediate assembly;
involved in translation fidelity"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S17"
/protein_id="NP_273209.1"
/db_xref="GI:15676078"
/db_xref="GeneID:902258"
/translation="MSETKNVRTLQGKVVSDKMDKTVTVLVERKVKHPLYGKIIRLST
KIHAHDENNQYGIGDVVVISESRPLSKTKSWVVSELVEKARSI"
misc_feature 156120..156368
/gene="rpsQ"
/locus_tag="NMB0151"
/note="30S ribosomal protein S17; Reviewed; Region: rpsQ;
PRK05610"
/db_xref="CDD:235532"
gene 156599..156967
/gene="rplN"
/locus_tag="NMB0152"
/db_xref="GeneID:902259"
CDS 156599..156967
/gene="rplN"
/locus_tag="NMB0152"
/note="binds to the 23S rRNA between the centers for
peptidyl transferase and GTPase"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L14"
/protein_id="NP_273210.1"
/db_xref="GI:15676079"
/db_xref="GeneID:902259"
/translation="MIQMQTILDVADNSGARRVMCIKVLGGSKRRYASVGDIIKVAVK
DAAPRGRVKKGDVYNAVVVRTAKGVRRPDGALIKFDNNAAVLLNNKLEPLGTRIFGPV
TRELRTERFMKIVSLAPEVL"
misc_feature 156599..156964
/gene="rplN"
/locus_tag="NMB0152"
/note="50S ribosomal protein L14; Validated; Region: rplN;
PRK05483"
/db_xref="CDD:180117"
gene 156979..157302
/gene="rplX"
/locus_tag="NMB0153"
/db_xref="GeneID:902260"
CDS 156979..157302
/gene="rplX"
/locus_tag="NMB0153"
/note="assembly initiator protein; binds to 5' end of 23S
rRNA and nucleates assembly of the 50S; surrounds
polypeptide exit tunnel"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L24"
/protein_id="NP_273211.1"
/db_xref="GI:15676080"
/db_xref="GeneID:902260"
/translation="MNKIIKGDRVVVIAGKDKGKQGQVVRVLGDKVVVEGVNVVKRHQ
KPNPMRGIEGGIITKEMPLDISNIAILNPETNKADRVGIKLIENEGKVKRVRFFKSNG
SIIGA"
misc_feature 156979..157293
/gene="rplX"
/locus_tag="NMB0153"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK00004"
/db_xref="CDD:234566"
misc_feature 156997..157188
/gene="rplX"
/locus_tag="NMB0153"
/note="KOW motif of Ribosomal Protein L26; Region:
KOW_RPL26; cd06089"
/db_xref="CDD:240513"
misc_feature order(157018..157026,157054..157056,157099..157104,
157171..157176)
/gene="rplX"
/locus_tag="NMB0153"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240513"
gene 157312..157851
/gene="rplE"
/locus_tag="NMB0154"
/db_xref="GeneID:902261"
CDS 157312..157851
/gene="rplE"
/locus_tag="NMB0154"
/note="part of 50S and 5S/L5/L18/L25 subcomplex; contacts
5S rRNA and P site tRNA; forms a bridge to the 30S subunit
in the ribosome by binding to S13"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L5"
/protein_id="NP_273212.1"
/db_xref="GI:15676081"
/db_xref="GeneID:902261"
/translation="MARLREFYKETVVPELVKQFGYKSVMEVPRIEKITLNMGVGEAV
ADKKVMEHAVSDLEKIAGQKPVVTVARKSIAGFKIRDNYPVGCKVTLRRDQMFEFLDR
LITIALPRVRDFRGVSGKSFDGRGNYNMGVREQIIFPEIEYDKIDALRGLNITITTTA
KTDEEAKALLSLFKFPFKG"
misc_feature 157312..157845
/gene="rplE"
/locus_tag="NMB0154"
/note="50S ribosomal protein L5; Validated; Region: rplE;
PRK00010"
/db_xref="CDD:178791"
misc_feature 157381..157551
/gene="rplE"
/locus_tag="NMB0154"
/note="Ribosomal protein L5; Region: Ribosomal_L5;
pfam00281"
/db_xref="CDD:109342"
misc_feature 157561..157845
/gene="rplE"
/locus_tag="NMB0154"
/note="ribosomal L5P family C-terminus; Region:
Ribosomal_L5_C; pfam00673"
/db_xref="CDD:201383"
gene 157854..158159
/gene="rpsN"
/locus_tag="NMB0155"
/db_xref="GeneID:902262"
CDS 157854..158159
/gene="rpsN"
/locus_tag="NMB0155"
/note="located in the peptidyl transferase center and
involved in assembly of 30S ribosome subunit; similar to
what is observed with proteins L31 and L33, some proteins
in this family contain CXXC motifs that are involved in
zinc binding; if two copies are present in a genome, then
the duplicated copy appears to have lost the zinc-binding
motif and is instead regulated by zinc; the proteins in
this group do not appear to have the zinc-binding motif"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S14"
/protein_id="NP_273213.1"
/db_xref="GI:15676082"
/db_xref="GeneID:902262"
/translation="MAKKALINRDLKRQALAKKYAAKRAAIKAVINDSNATEEERFEA
RLRFQSIPRNAAPVRQRRRCALTGRPRGTFRKFGLGRIKIREIAMRGEIPGVVKASW"
misc_feature 157854..158156
/gene="rpsN"
/locus_tag="NMB0155"
/note="30S ribosomal protein S14; Reviewed; Region: rpsN;
PRK08881"
/db_xref="CDD:181574"
gene 158175..158567
/gene="rpsH"
/locus_tag="NMB0156"
/db_xref="GeneID:902263"
CDS 158175..158567
/gene="rpsH"
/locus_tag="NMB0156"
/note="binds directly to 16S rRNA central domain where it
helps coordinate assembly of the platform of the 30S
subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S8"
/protein_id="NP_273214.1"
/db_xref="GI:15676083"
/db_xref="GeneID:902263"
/translation="MSMHDPISDMLTRIRNAQRANKAAVAMPSSKLKCAIAKVLKEEG
YIEDFAVSSDVKSILEIQLKYYAGRPVIEQIKRVSRPGLRIYKASSEIPSVMNGLGIA
IVSTSKGVMTDRKARSQGVGGELLCIVA"
misc_feature 158178..158564
/gene="rpsH"
/locus_tag="NMB0156"
/note="30S ribosomal protein S8; Validated; Region: rpsH;
PRK00136"
/db_xref="CDD:234658"
gene 158581..159114
/gene="rplF"
/locus_tag="NMB0157"
/db_xref="GeneID:902264"
CDS 158581..159114
/gene="rplF"
/locus_tag="NMB0157"
/note="ribosomal protein L6 appears to have arisen as a
result of an ancient gene duplication as based on
structural comparison of the Bacillus stearothermophilus
protein; RNA-binding appears to be in the C-terminal
domain; mutations in the L6 gene confer resistance to
aminoglycoside antibiotics such as gentamicin and these
occur in truncations of the C-terminal domain; it has been
localized to a region between the base of the L7/L12 stalk
and the central protuberance"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L6"
/protein_id="NP_273215.1"
/db_xref="GI:15676084"
/db_xref="GeneID:902264"
/translation="MSRVAKNPVTVPAGVEVKFGAEALVIKGKNGELSFPLHSDVAIE
FNDGKLTFVANNSSKQANAMSGTARALVSNMVKGVSEGFEKRLQLIGVGYRAQAQGKI
LNLSLGFSHPIVYEMPEGVSVQTPSQTEIVLTGSDKQVVGQVAAEIRAFRAPEPYKGK
GVRYVGEVVVMKEAKKK"
misc_feature 158581..159111
/gene="rplF"
/locus_tag="NMB0157"
/note="50S ribosomal protein L6; Validated; Region: rplF;
PRK05498"
/db_xref="CDD:235495"
misc_feature 158611..158826
/gene="rplF"
/locus_tag="NMB0157"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:215872"
misc_feature 158848..159072
/gene="rplF"
/locus_tag="NMB0157"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:215872"
gene 159128..159481
/gene="rplR"
/locus_tag="NMB0158"
/db_xref="GeneID:902265"
CDS 159128..159481
/gene="rplR"
/locus_tag="NMB0158"
/note="binds 5S rRNA along with protein L5 and L25"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L18"
/protein_id="NP_273216.1"
/db_xref="GI:15676085"
/db_xref="GeneID:902265"
/translation="MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEG
DKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGR
VKALAEAARENGLSF"
misc_feature 159200..159472
/gene="rplR"
/locus_tag="NMB0158"
/note="Ribosomal L18/L5e: L18 (L5e) is a ribosomal
protein found in the central protuberance (CP) of the
large subunit. L18 binds 5S rRNA and induces a
conformational change that stimulates the binding of L5 to
5S rRNA. Association of 5S rRNA with 23S rRNA...; Region:
Ribosomal_L18_L5e; cd00432"
/db_xref="CDD:238246"
misc_feature order(159200..159202,159212..159229,159233..159235,
159239..159241,159260..159268,159275..159277,
159398..159400,159431..159433)
/gene="rplR"
/locus_tag="NMB0158"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:238246"
misc_feature order(159401..159403,159410..159412,159458..159460)
/gene="rplR"
/locus_tag="NMB0158"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238246"
misc_feature 159416..159418
/gene="rplR"
/locus_tag="NMB0158"
/note="L5 interface [polypeptide binding]; other site"
/db_xref="CDD:238246"
gene 159500..160018
/gene="rpsE"
/locus_tag="NMB0159"
/db_xref="GeneID:902266"
CDS 159500..160018
/gene="rpsE"
/locus_tag="NMB0159"
/note="located at the back of the 30S subunit body where
it stabilizes the conformation of the head with respect to
the body; contacts S4 and S8; with S4 and S12 plays a role
in translational accuracy; mutations in this gene result
in spectinomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S5"
/protein_id="NP_273217.1"
/db_xref="GI:15676086"
/db_xref="GeneID:902266"
/translation="MAKHEIEERGDGLIEKMVAVNRVTKVVKGGRIMAFSALTVVGDG
DGRIGMGKGKSKEVPVAVQKAMDQARRSMIKVPLKNGTIHHEVIGRHGATKVFMQPAK
EGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRG
LTVEDILGVNHG"
misc_feature 159500..160003
/gene="rpsE"
/locus_tag="NMB0159"
/note="30S ribosomal protein S5; Validated; Region: rpsE;
PRK00550"
/db_xref="CDD:234790"
misc_feature 159533..159733
/gene="rpsE"
/locus_tag="NMB0159"
/note="Ribosomal protein S5, N-terminal domain; Region:
Ribosomal_S5; pfam00333"
/db_xref="CDD:144065"
misc_feature 159758..159979
/gene="rpsE"
/locus_tag="NMB0159"
/note="Ribosomal protein S5, C-terminal domain; Region:
Ribosomal_S5_C; pfam03719"
/db_xref="CDD:190724"
gene 160011..160196
/gene="rpmD"
/locus_tag="NMB0160"
/db_xref="GeneID:902267"
CDS 160011..160196
/gene="rpmD"
/locus_tag="NMB0160"
/note="L30 binds domain II of the 23S rRNA and the 5S
rRNA; similar to eukaryotic protein L7"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L30"
/protein_id="NP_273218.1"
/db_xref="GI:15676087"
/db_xref="GeneID:902267"
/translation="MAEQKKIRVTLVKSLIGTIESHRACARGLGLRRREHTVEVLDTP
ENRGMINKISYLLKVES"
misc_feature 160029..160190
/gene="rpmD"
/locus_tag="NMB0160"
/note="Ribosomal protein L30, which is found in eukaryotes
and prokaryotes but not in archaea, is one of the smallest
ribosomal proteins with a molecular mass of about 7kDa.
L30 binds the 23SrRNA as well as the 5S rRNA and is one of
five ribosomal proteins that...; Region: Ribosomal_L30;
cd01658"
/db_xref="CDD:100100"
misc_feature order(160047..160052,160056..160061,160065..160073,
160080..160085,160092..160100,160104..160106,
160113..160115,160128..160133,160140..160148,
160152..160157)
/gene="rpmD"
/locus_tag="NMB0160"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:100100"
gene 160198..160632
/gene="rplO"
/locus_tag="NMB0161"
/db_xref="GeneID:902268"
CDS 160198..160632
/gene="rplO"
/locus_tag="NMB0161"
/note="late assembly protein"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L15"
/protein_id="NP_273219.1"
/db_xref="GI:15676088"
/db_xref="GeneID:902268"
/translation="MFLNTIQPAVGATHAGRRVGRGIGSGLGKTGGRGHKGQKSRSGG
FHKVGFEGGQMPLQRRLPKRGFKSLTASANAQLRLSELESIAVNEIDILVLKQAGLIA
STVSNVKVIASGEISKAVALKGIKVTKGARAAIEAVGGKIEM"
misc_feature 160198..160626
/gene="rplO"
/locus_tag="NMB0161"
/note="50S ribosomal protein L15; Reviewed; Region: rplO;
PRK05592"
/db_xref="CDD:235523"
gene 160644..161954
/gene="secY"
/locus_tag="NMB0162"
/db_xref="GeneID:902269"
CDS 160644..161954
/gene="secY"
/locus_tag="NMB0162"
/note="forms heterotrimeric complex in the membrane; in
bacteria the complex consists of SecY which forms the
channel pore and SecE and SecG; the SecG subunit is not
essential; in bacteria translocation is driven via the
SecA ATPase"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecY"
/protein_id="NP_273220.1"
/db_xref="GI:15676089"
/db_xref="GeneID:902269"
/translation="MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAV
ALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIMPYISASIIVQLASEILPSLKAL
KKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTG
TMFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVF
GALLLIYLVVYFESAQRKIPIHYAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSII
LFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFFCYFYTALVFSPKEM
AENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFY
LGGTSLLILVVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK"
misc_feature 160677..161918
/gene="secY"
/locus_tag="NMB0162"
/note="preprotein translocase subunit SecY; Reviewed;
Region: secY; PRK09204"
/db_xref="CDD:236412"
misc_feature 160860..161867
/gene="secY"
/locus_tag="NMB0162"
/note="SecY translocase; Region: SecY; pfam00344"
/db_xref="CDD:215869"
gene 161959..162177
/gene="infA"
/locus_tag="NMB0163"
/db_xref="GeneID:902270"
CDS 161959..162177
/gene="infA"
/locus_tag="NMB0163"
/note="stimulates the activities of the other two
initiation factors, IF-2 and IF-3"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-1"
/protein_id="NP_273221.1"
/db_xref="GI:15676090"
/db_xref="GeneID:902270"
/translation="MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHY
IRISPGDKVTVELTPYDLTRARIVFRAR"
misc_feature 161977..162168
/gene="infA"
/locus_tag="NMB0163"
/note="S1_IF1: Translation Initiation Factor IF1, S1-like
RNA-binding domain. IF1 contains an S1-like RNA-binding
domain, which is found in a wide variety of RNA-associated
proteins. Translation initiation includes a number of
interrelated steps preceding the...; Region: S1_IF1;
cd04451"
/db_xref="CDD:239898"
misc_feature order(162001..162009,162025..162027,162061..162063,
162070..162075,162088..162099,162148..162150,
162154..162156)
/gene="infA"
/locus_tag="NMB0163"
/note="rRNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239898"
misc_feature order(162061..162063,162073..162075,162166..162168)
/gene="infA"
/locus_tag="NMB0163"
/note="predicted 30S ribosome binding site; other site"
/db_xref="CDD:239898"
gene 162198..162311
/gene="rpmJ"
/locus_tag="NMB0164"
/db_xref="GeneID:902271"
CDS 162198..162311
/gene="rpmJ"
/locus_tag="NMB0164"
/note="smallest protein in the large subunit; similar to
what is found with protein L31 and L33 several bacterial
genomes contain paralogs which may be regulated by zinc;
the protein from Thermus thermophilus has a zinc-binding
motif and contains a bound zinc ion; the proteins in this
group have the motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L36"
/protein_id="NP_273222.1"
/db_xref="GI:15676091"
/db_xref="GeneID:902271"
/translation="MRVQPSVKKICRNCKIIRRNRVVRVICTDLRHKQRQG"
gene 162377..162739
/gene="rpsM"
/locus_tag="NMB0165"
/db_xref="GeneID:902272"
CDS 162377..162739
/gene="rpsM"
/locus_tag="NMB0165"
/note="located at the top of the head of the 30S subunit,
it contacts several helices of the 16S rRNA; makes contact
with the large subunit via RNA-protein interactions and
via protein-protein interactions with L5; contacts P-site
tRNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S13"
/protein_id="NP_273223.1"
/db_xref="GI:15676092"
/db_xref="GeneID:902272"
/translation="MARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK
AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRT
RTNARTRKGPRKAIAGKK"
misc_feature 162377..162736
/gene="rpsM"
/locus_tag="NMB0165"
/note="30S ribosomal protein S13; Validated; Region: rpsM;
PRK05179"
/db_xref="CDD:235358"
misc_feature 162383..162718
/gene="rpsM"
/locus_tag="NMB0165"
/note="30S ribosomal protein S13; Region: bact_S13;
TIGR03631"
/db_xref="CDD:213840"
gene 162759..163154
/gene="rpsK"
/locus_tag="NMB0166"
/db_xref="GeneID:902273"
CDS 162759..163154
/gene="rpsK"
/locus_tag="NMB0166"
/note="located on the platform of the 30S subunit, it
bridges several disparate RNA helices of the 16S rRNA;
forms part of the Shine-Dalgarno cleft in the 70S
ribosome; interacts with S7 and S18 and IF-3"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S11"
/protein_id="NP_273224.1"
/db_xref="GI:15676093"
/db_xref="GeneID:902273"
/translation="MAKANTASRVRKKVRKTVSEGIVHVHASFNNTIITITDRQGNAL
SWATSGGAGFKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRAL
NALGFKITSITDVTPLPHNGCRPPKKRRI"
misc_feature 162768..163151
/gene="rpsK"
/locus_tag="NMB0166"
/note="30S ribosomal protein S11; Validated; Region:
PRK05309"
/db_xref="CDD:180007"
gene 163174..163794
/gene="rpsD"
/locus_tag="NMB0167"
/db_xref="GeneID:902274"
CDS 163174..163794
/gene="rpsD"
/locus_tag="NMB0167"
/note="primary rRNA binding protein; nucleates 30S
assembly; involved in translational accuracy with proteins
S5 and S12; interacts with protein S5; involved in
autogeneously regulating ribosomal proteins by binding to
pseudoknot structures in the polycistronic mRNA; interacts
with transcription complex and functions similar to
protein NusA in antitermination"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S4"
/protein_id="NP_273225.1"
/db_xref="GI:15676094"
/db_xref="GeneID:902274"
/translation="MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK
KPRLSDYGLQLREKQKIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVV
YRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALG
LATQIGLPGWVSVDADKLEGVFKNMPDRSELTGDINEQLVVEFYSK"
misc_feature 163174..163791
/gene="rpsD"
/locus_tag="NMB0167"
/note="30S ribosomal protein S4; Validated; Region: rpsD;
PRK05327"
/db_xref="CDD:235411"
misc_feature 163177..163437
/gene="rpsD"
/locus_tag="NMB0167"
/note="Ribosomal protein S4/S9 N-terminal domain; Region:
Ribosomal_S4; pfam00163"
/db_xref="CDD:215762"
misc_feature 163462..163644
/gene="rpsD"
/locus_tag="NMB0167"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature order(163462..163464,163498..163503,163507..163512,
163516..163521,163528..163533,163537..163539,
163558..163581,163585..163587)
/gene="rpsD"
/locus_tag="NMB0167"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
gene 163820..164806
/gene="rpoA"
/locus_tag="NMB0168"
/db_xref="GeneID:902275"
CDS 163820..164806
/gene="rpoA"
/locus_tag="NMB0168"
/EC_number="2.7.7.6"
/note="catalyzes the transcription of DNA into RNA using
the four ribonucleoside triphosphates as substrates.
Dimerization of the alpha subunit is the first step in the
sequential assembly of subunits to form the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit alpha"
/protein_id="NP_273226.1"
/db_xref="GI:15676095"
/db_xref="GeneID:902275"
/translation="MQNSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALR
RILLSSMNGFAPTEVAIAGVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVL
KKSGSGVVSAGDIELPHDVEILNPGHVICHLADNGQIEMEIKVEQGRGYQSVSGRQVV
RDENRQIGAIQLDASFSPISRVSFEVEPARVEQRTDLDKLVLDIETDGSIDPEEAVRS
AARILIDQMSIFADLQGTPVEEVEEKAPPIDPVLLRPVDDLELTVRSANCLKAEDIYY
IGDLIQRTETELLKTPNLGRKSLNEIKEVLASKGLTLGSKLEAWPPVGLEKP"
misc_feature 163835..164761
/gene="rpoA"
/locus_tag="NMB0168"
/note="DNA-directed RNA polymerase subunit alpha;
Provisional; Region: PRK05182"
/db_xref="CDD:235359"
misc_feature 163859..164509
/gene="rpoA"
/locus_tag="NMB0168"
/note="N-terminal domain of the Alpha subunit of Bacterial
RNA polymerase; Region: RNAP_alpha_NTD; cd06928"
/db_xref="CDD:132904"
misc_feature order(163859..163861,163865..163867,163901..163903,
163910..163912,163916..163924,163931..163933,
163943..163945,163952..163957,163967..163969,
164477..164479,164486..164491,164495..164500,
164504..164509)
/gene="rpoA"
/locus_tag="NMB0168"
/note="alphaNTD homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:132904"
misc_feature order(163892..163894,163928..163930,163940..163942,
163949..163954,164015..164017,164021..164023,
164027..164029,164033..164044,164057..164059,
164075..164077,164219..164221,164270..164272,
164336..164338,164342..164344,164360..164368,
164372..164383,164411..164413,164420..164422,
164426..164428)
/gene="rpoA"
/locus_tag="NMB0168"
/note="alphaNTD - beta interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature order(164021..164023,164057..164059,164066..164068,
164075..164080,164267..164272,164276..164278,
164342..164344,164357..164362,164387..164389)
/gene="rpoA"
/locus_tag="NMB0168"
/note="alphaNTD - beta' interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature 164543..164743
/gene="rpoA"
/locus_tag="NMB0168"
/note="Bacterial RNA polymerase, alpha chain C terminal
domain; Region: RNA_pol_A_CTD; pfam03118"
/db_xref="CDD:202541"
gene 164830..165198
/gene="rplQ"
/locus_tag="NMB0169"
/db_xref="GeneID:902276"
CDS 164830..165198
/gene="rplQ"
/locus_tag="NMB0169"
/note="is a component of the macrolide binding site in the
peptidyl transferase center"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L17"
/protein_id="NP_273227.1"
/db_xref="GI:15676096"
/db_xref="GeneID:902276"
/translation="MRHRNGNRKLNRTSSHRAAMLRNMANSLLTHEAIVTTLPKAKEL
RRVVEPLITLGKKPSLANRRLAFDRTRDRDVVVKLFGDLGPRFTARNGGYVRVLKYGF
RKGDNAPLALVELVDKPAAE"
misc_feature 164830..165177
/gene="rplQ"
/locus_tag="NMB0169"
/note="Ribosomal protein L17 [Translation, ribosomal
structure and biogenesis]; Region: RplQ; COG0203"
/db_xref="CDD:223281"
gene 165345..166058
/gene="minC"
/locus_tag="NMB0170"
/db_xref="GeneID:902277"
CDS 165345..166058
/gene="minC"
/locus_tag="NMB0170"
/note="blocks the formation of polar Z-ring septums"
/codon_start=1
/transl_table=11
/product="septum formation inhibitor"
/protein_id="NP_273228.1"
/db_xref="GI:15676097"
/db_xref="GeneID:902277"
/translation="MMVYIMNAFDIKSTKMDVLSISLHTSDLFDLEDVLVKLGKKFQE
SGVVPFVLDVQEFDYPESLDLAALVSLFSRHGMQILGLKHSNERWAAAAMKYHLLFCL
SHSENVKELGQVEVQKTEDGQKARKTVLITSPVRTGQQVYAEDGDLIVTGAVSQGAEL
IADGNIHIYAPMRGRALAGAKGDTSARIFIHSMQAELVSVAGIYRNFEQDLPNHLHKQ
PVQILLQDNRLVISAIGSE"
misc_feature 165348..166052
/gene="minC"
/locus_tag="NMB0170"
/note="septum formation inhibitor; Reviewed; Region: minC;
PRK04516"
/db_xref="CDD:179856"
misc_feature 165357..165668
/gene="minC"
/locus_tag="NMB0170"
/note="Septum formation inhibitor MinC, N-terminal domain;
Region: MinC_N; pfam05209"
/db_xref="CDD:203206"
misc_feature 165726..166046
/gene="minC"
/locus_tag="NMB0170"
/note="Septum formation inhibitor MinC, C-terminal domain;
Region: MinC_C; pfam03775"
/db_xref="CDD:146423"
gene 166086..166901
/gene="minD"
/locus_tag="NMB0171"
/db_xref="GeneID:902278"
CDS 166086..166901
/gene="minD"
/locus_tag="NMB0171"
/note="identified by similarity to EGAD:13527; match to
protein family HMM PF01656; match to protein family HMM
TIGR01968"
/codon_start=1
/transl_table=11
/product="septum site-determining protein"
/protein_id="NP_273229.1"
/db_xref="GI:15676098"
/db_xref="GeneID:902278"
/translation="MAKIIVVTSGKGGVGKTTTSASIATGLALRGYKTAVIDFDVGLR
NLDLIMGCERRVVYDLINVIQGEATLNQALIKDKNCENLFILPASQTRDKDALTREGV
EKVMQELSGKKMGFEYIICDSPAGIEQGALMALYFADEAIVTTNPEVSSVRDSDRILG
ILQSKSHKAEQGGSVKEHLLITRYSPERVAKGEMLSVQDICDILHIPLLGVIPESQNV
LQASNSGEPVIHQDSVAASEAYKDVIARLLGENREMRFLEAEKKSFFKRLFGG"
misc_feature 166146..166898
/gene="minD"
/locus_tag="NMB0171"
/note="Septum formation inhibitor-activating ATPase [Cell
division and chromosome partitioning]; Region: MinD;
COG2894"
/db_xref="CDD:225447"
misc_feature 166146..166805
/gene="minD"
/locus_tag="NMB0171"
/note="Bacterial cell division requires the formation of a
septum at mid-cell. The site is determined by the min
operon products MinC, MinD and MinE. MinC is a nonspecific
inhibitor of the septum protein FtsZ. MinE is the
supressor of MinC. MinD plays a pivotal...; Region: MinD;
cd02036"
/db_xref="CDD:238993"
misc_feature 166197..166205
/gene="minD"
/locus_tag="NMB0171"
/note="Switch I; other site"
/db_xref="CDD:238993"
misc_feature 166449..166463
/gene="minD"
/locus_tag="NMB0171"
/note="Switch II; other site"
/db_xref="CDD:238993"
gene 166905..167168
/gene="minE"
/locus_tag="NMB0172"
/db_xref="GeneID:902279"
CDS 166905..167168
/gene="minE"
/locus_tag="NMB0172"
/note="works in conjunction with MinC and MinD to enable
cell division at the midpoint of the long axis of the
cell"
/codon_start=1
/transl_table=11
/product="cell division topological specificity factor
MinE"
/protein_id="NP_273230.1"
/db_xref="GI:15676099"
/db_xref="GeneID:902279"
/translation="MSLIEFLFGRKQKTATVARDRLQIIIAQERAQEGQAPDYLPTLR
KELMEVLSKYVNVSLDNIRISQEKQDGMDVLELNITLPEQKKV"
misc_feature 166905..167156
/gene="minE"
/locus_tag="NMB0172"
/note="cell division topological specificity factor MinE;
Provisional; Region: PRK13989"
/db_xref="CDD:184442"
gene 167172..168092
/locus_tag="NMB0173"
/db_xref="GeneID:902280"
CDS 167172..168092
/locus_tag="NMB0173"
/note="identified by similarity to EGAD:137604; match to
protein family HMM PF00126; match to protein family HMM
PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_273231.1"
/db_xref="GI:15676100"
/db_xref="GeneID:902280"
/translation="MTLTELRYIVAVAQERHFGRAARRCFVSQPTLSIAIKKLEEELA
VSLFDRSSNDIITTEAGERIVAQARKVLEEAELIRHLANEEQNELEGAFKLGLIFTVA
PYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPL
YDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQ
GLTNTLQGSSINTIRHMVASGLAISVLPATALTENDHMLFSIIPFEGTPPSRRVVLAY
RRNFVRPKALSAMKAAIMQSQLHGVSFICD"
misc_feature 167172..168056
/locus_tag="NMB0173"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 167178..167357
/locus_tag="NMB0173"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 167442..168050
/locus_tag="NMB0173"
/note="The C-terminal substrate-binding domain of the
LysR-type transcriptional regulator OxyR, a member of the
type 2 periplasmic binding fold protein superfamily;
Region: PBP2_OxyR; cd08411"
/db_xref="CDD:176103"
misc_feature order(167478..167480,167487..167492,167499..167501,
167511..167513,167535..167549,167841..167843,
167850..167855,167862..167864,167871..167876,
167880..167885)
/locus_tag="NMB0173"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176103"
gene complement(168422..171259)
/gene="valS"
/locus_tag="NMB0174"
/db_xref="GeneID:902281"
CDS complement(168422..171259)
/gene="valS"
/locus_tag="NMB0174"
/EC_number="6.1.1.9"
/note="valine--tRNA ligase; ValRS; converts valine ATP and
tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I
aminoacyl-tRNA synthetase type 1 subfamily; has a
posttransfer editing process to hydrolyze mischarged
Thr-tRNA(Val) which is done by the editing domain"
/codon_start=1
/transl_table=11
/product="valyl-tRNA synthetase"
/protein_id="NP_273232.1"
/db_xref="GI:15676101"
/db_xref="GeneID:902281"
/translation="MLDKYNPAEIESKHYQNWEEQGYFQPDMDLTKPSFSIQLPPPNV
TGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQLAAQNVSRH
DLGREKFLEKVWEWKEVSGGTITQQMRRVGCSADWTREYFTMDDVRAETVTEVFVRLY
EQGLIYRGKRLVNWDPVLGTAVSDLEVESVEEQGSMWHIRYPLADNPAEAVIVATTRP
ETLLGDVAVAVNPEDERYTHLIGKELILPLTGRTIPVIADEYVEKDFGTGCVKITPAH
DFNDYEVGKRHDTRLINVFNLEAKVLANAEVFNFKGEAQLGFALPEKYAGLDRFAARK
QMVADLQEQGFLVEIKPHTLMTPKGDRTGSVIEPMLTSQWFVAMSATPNGGEPDSEFK
GLSLADKAKKAVDSGAVRFIPENWVNTYNQWMNNIQDWCISRQLWWGHQIPAWYDNEG
NVYVARNQEEAEKQAGKTGLTREEDVLDTWFSSALVPFSTLGWPSETDELKAFLPSNV
LVTGYEIIFFWVARMIMMTTHFTGKVPFKDVYIHGIVRDHEGKKMSKSEGNVIDPVDL
IDGIGLEKLLVKRTTGLRKPETAPKVEEATKKLFPEGIPSMGADALRFTMASYASLGR
SVNFDFKRAEGYRNFCNKIWNATNFVLMNTENQDCGYGATAAEPRGYSFPDMWIVGRL
NQTIEQVTQAYETYRFDLAAETLYSFVWNDYCDWYLELAKVQLQTGCASRQRATRHTL
LRVLEAALRLLHPIIPFITEELWQTVAPMCDAKTADSIMLARFPEADSGEIVQTAFEQ
MTVLQDLIGAVRNLRGEMGIQPNVKAPLFVESTDDLADYLKYLPMMTRLTEAQQVAAL
PESEDAPVAVCNGARLMLKVEIDKAAETARLSKEAEKLQKALDKLNAKLSKPGYTEKA
PAHLVEKDKADLAELEDKMAKVQNQLAKLKD"
misc_feature complement(168425..171259)
/gene="valS"
/locus_tag="NMB0174"
/note="valyl-tRNA synthetase; Reviewed; Region: valS;
PRK05729"
/db_xref="CDD:235582"
misc_feature complement(<170627..171163)
/gene="valS"
/locus_tag="NMB0174"
/note="catalytic core domain of valyl-tRNA synthetases;
Region: ValRS_core; cd00817"
/db_xref="CDD:185677"
misc_feature complement(171104..171115)
/gene="valS"
/locus_tag="NMB0174"
/note="HIGH motif; other site"
/db_xref="CDD:185677"
misc_feature complement(<170378..170665)
/gene="valS"
/locus_tag="NMB0174"
/note="Leucyl-tRNA synthetase, Domain 2; Region:
tRNA-synt_1_2; pfam13603"
/db_xref="CDD:222257"
misc_feature complement(169376..>170185)
/gene="valS"
/locus_tag="NMB0174"
/note="catalytic core domain of valyl-tRNA synthetases;
Region: ValRS_core; cd00817"
/db_xref="CDD:185677"
misc_feature complement(order(169601..169603,169625..169636,
169703..169705,169715..169720,169724..169729,
169811..169813,169820..169822))
/gene="valS"
/locus_tag="NMB0174"
/note="active site"
/db_xref="CDD:185677"
misc_feature complement(169592..169606)
/gene="valS"
/locus_tag="NMB0174"
/note="KMSKS motif; other site"
/db_xref="CDD:185677"
misc_feature complement(168968..169378)
/gene="valS"
/locus_tag="NMB0174"
/note="Anticodon-binding domain of valyl tRNA synthetases;
Region: Anticodon_Ia_Val; cd07962"
/db_xref="CDD:153416"
misc_feature complement(order(169094..169096,169103..169108,
169130..169132,169151..169153,169160..169162,
169313..169318,169322..169327,169334..169339,
169346..169351,169355..169357,169364..169369,
169373..169375))
/gene="valS"
/locus_tag="NMB0174"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153416"
misc_feature complement(order(169094..169096,169103..169108,
169118..169120,169313..169318,169322..169327,
169334..169336))
/gene="valS"
/locus_tag="NMB0174"
/note="anticodon binding site; other site"
/db_xref="CDD:153416"
misc_feature complement(168428..168625)
/gene="valS"
/locus_tag="NMB0174"
/note="Valyl tRNA synthetase tRNA binding arm; Region:
Val_tRNA-synt_C; pfam10458"
/db_xref="CDD:151031"
gene complement(171356..172165)
/locus_tag="NMB0175"
/db_xref="GeneID:902282"
CDS complement(171356..172165)
/locus_tag="NMB0175"
/note="identified by similarity to EGAD:21714; match to
protein family HMM PF02535"
/codon_start=1
/transl_table=11
/product="zinc transporter ZupT"
/protein_id="NP_273233.1"
/db_xref="GI:15676102"
/db_xref="GeneID:902282"
/translation="MPDFSMSNLAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFG
LAFAGGAMVYVSLTEIFSKSSEAFAEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNP
HETLDAQDPSFQESKRRHIARVGMMAAFAITAHNFPEGLATFFATLENPAVGMPLALA
IAIHNIPEGISIAAPVYFATRSRKKTVWACLLSGLAEPLGAALGYLVLQPFLSPAVFG
SVFGVIAGVMVFLALDELLPAAKRYSDGHETVYGLTTGMAVIAVSLVLFHF"
misc_feature complement(171362..172150)
/locus_tag="NMB0175"
/note="zinc transporter ZupT; Provisional; Region:
PRK04201"
/db_xref="CDD:235253"
gene complement(172346..173602)
/gene="dadA"
/locus_tag="NMB0176"
/db_xref="GeneID:902283"
CDS complement(172346..173602)
/gene="dadA"
/locus_tag="NMB0176"
/EC_number="1.4.99.1"
/note="catalyzes the oxidative deamination of D-amino
acids"
/codon_start=1
/transl_table=11
/product="D-amino acid dehydrogenase small subunit"
/protein_id="NP_273234.1"
/db_xref="GI:15676103"
/db_xref="GeneID:902283"
/translation="MKVLVLGAGVAGVSSAWYLAEAGHEVTVIDRAEGVAMETSFANA
GQLSYGYTTPWAAPGIPTKALKWLFKSHPPLLFRPDGSLYQIEWLWQMLQNCTAAHYQ
TNKERMVRISEYSREMFRRFEAQTGMNFEGRKKGTLQIFRQTKEVEAAKQDIAVLERY
GVPYRRLKPEECAEFEPALARVTAKIAGGLHLPADATGDCRLFTENLYKLCQEKGVRF
HFNQNISRIDHNGLRIKTVETETGRFEADAVVCALGCFSRTVLAQLDLNLPIYPVKGY
SLTLPVTNSDGAPVSTVLDESYKVAITRFDNRIRVGGMAELSGYEIKLPEKRRETLAL
VVNDLFPEGGDLSQASFWSGLRPMTPDSTPLIGRTRFDNLFLNTGHGTLGWTMSLGSA
KLTADIVSGKDTEIRSDDLSLSRYQA"
misc_feature complement(172355..173602)
/gene="dadA"
/locus_tag="NMB0176"
/note="D-amino acid dehydrogenase small subunit;
Validated; Region: PRK00711"
/db_xref="CDD:234819"
misc_feature complement(<172766..>173122)
/gene="dadA"
/locus_tag="NMB0176"
/note="hydroxyglutarate oxidase; Provisional; Region:
PRK11728"
/db_xref="CDD:183292"
gene complement(173681..175072)
/locus_tag="NMB0177"
/db_xref="GeneID:902284"
CDS complement(173681..175072)
/locus_tag="NMB0177"
/note="identified by similarity to EGAD:90049; match to
protein family HMM PF01235; match to protein family HMM
TIGR00835"
/codon_start=1
/transl_table=11
/product="sodium/alanine symporter"
/protein_id="NP_273235.1"
/db_xref="GI:15676104"
/db_xref="GeneID:902284"
/translation="MQVFLDNPKAFFETVSGWVWGPLMLMLLVGTGILLTVLLKGLQF
TMLGYALKQAFMPPKKHKSGEGHEGDISHFAALMTALSATIGTGNIAGVATAVVTGGP
GAVFWMWMTAIFGMATKYGEGVLAVKYRVNNSKGEMSGGPMYYIEKGLGKNWKWMAVA
FALFGTFASFGIGSSVQSNSVAQAVQTSFGIEPAYTGITLTVLTAVVVLGGIKGIAKA
ASFIVPAMAVFYVLGGLSIIAINSDALMPAVKLIFSDAFSAQAVAGGAIGTVIRYGVA
RGVFSNEAGMGSAPIAAAAAKTDHPVRQALVSMTGTFLDTIVVCSITGIVLVMGLLGA
GGEFVKPEVSGAALTTVTFQKMLPGIGGWIVTIGLIFFAYSTILGWCYYGEKCAVYVF
GEKFAGLYRVGYVSSVMLGTVLSLDLVWLASDTFNGLMALPNLIALLLMAKVIVNETR
DFKQKITNGELPH"
misc_feature complement(173696..175042)
/locus_tag="NMB0177"
/note="Na+/alanine symporter [Amino acid transport and
metabolism]; Region: AlsT; COG1115"
/db_xref="CDD:224040"
misc_feature complement(173717..174946)
/locus_tag="NMB0177"
/note="Sodium:alanine symporter family; Region:
Na_Ala_symp; cl00548"
/db_xref="CDD:241939"
gene complement(175429..176205)
/gene="lpxA"
/locus_tag="NMB0178"
/db_xref="GeneID:902285"
CDS complement(175429..176205)
/gene="lpxA"
/locus_tag="NMB0178"
/EC_number="2.3.1.129"
/note="catalyzes the addition of
(R)-3-hydroxytetradecanoyl to the glucosamine disaccharide
in lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine acyltransferase"
/protein_id="NP_273236.1"
/db_xref="GI:15676105"
/db_xref="GeneID:902285"
/translation="MTLIHPTAVIDPKAELDSGVKVGAYTVIGPNVQIGANTEIGPHA
VINGHTSIGENNRIFQFASLGEIPQDKKYRDEPTKLIIGNGNTIREFTTFNLGTVTGI
GETRIGDDNWIMAYCHLAHDCVIGNHTIFANNASLAGHVTIGDYVVLGGYTLVFQFCR
IGDYAMTAFAAGVHKDVPPYFMASGYRAEPAGLNSEGMRRNGFTAEQISAVKDVYKTL
YHRGIPFEEAKADILRRAETQAELAVFRDFFAQSARGIIR"
misc_feature complement(175432..176205)
/gene="lpxA"
/locus_tag="NMB0178"
/note="UDP-N-acetylglucosamine acyltransferase;
Provisional; Region: PRK05289"
/db_xref="CDD:235390"
misc_feature complement(175438..176196)
/gene="lpxA"
/locus_tag="NMB0178"
/note="UDP-N-acetylglucosamine O-acyltransferase
(UDP-GlcNAc acyltransferase): Proteins in this family
catalyze the transfer of (R)-3-hydroxymyristic acid from
its acyl carrier protein thioester to UDP-GlcNAc. It is
the first enzyme in the lipid A biosynthetic...; Region:
LbH_UDP-GlcNAc_AT; cd03351"
/db_xref="CDD:100042"
misc_feature complement(order(175603..175608,175624..175626,
175699..175701,175735..175740,175786..175788,
175843..175845,175852..175854,175921..175923,
175990..175992,175999..176001))
/gene="lpxA"
/locus_tag="NMB0178"
/note="active site"
/db_xref="CDD:100042"
gene complement(176292..176741)
/gene="fabZ"
/locus_tag="NMB0179"
/db_xref="GeneID:902286"
CDS complement(176292..176741)
/gene="fabZ"
/locus_tag="NMB0179"
/note="in Pseudomonas aeruginosa this enzyme is a trimer
of dimers; essential for membrane formation; performs
third step of type II fatty acid biosynthesis; catalyzes
dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="NP_273237.1"
/db_xref="GI:15676106"
/db_xref="GeneID:902286"
/translation="MDVQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVT
INEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKR
QVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAKRVV"
misc_feature complement(176301..176696)
/gene="fabZ"
/locus_tag="NMB0179"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:238615"
gene complement(176775..177821)
/gene="lpxD"
/locus_tag="NMB0180"
/db_xref="GeneID:902287"
CDS complement(176775..177821)
/gene="lpxD"
/locus_tag="NMB0180"
/note="adds the O-linked and N-linked 3(R)-hydroxy fatty
acids to the glucosamine disaccharide during lipid A
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="NP_273238.1"
/db_xref="GI:15676107"
/db_xref="GeneID:902287"
/translation="MIPATYTLSQITARLGGEWRGEDISVTAVRPLADAQAEHISFLA
NPKYKAEVHDSSAGAVIVSAKAADGFEGRNLIVADDPYLYFAKVARLFSPVVKARGGI
HPTAVVEPGATVPTSCEIGANVYIGANTVLGEGCRILANAVVQHDCKLGDEVVLHPNA
VVYYGCTLGRRVEIHSGAVIGADGFGLAFADDSWFKIPQTGAVTLGDDVEIGSNTNID
RGAMSDTTVGNGTKIDNQVQIGHNCKIGSHTVIAAKTGISGSVTIGSYCIIGGGVGTV
GHIEIADKTTIGGGTSVTHSITESGKHLAGIFPMSTHKEWARNAVYIHRLSEMNKRLK
TLEQQLSDAGQDSK"
misc_feature complement(176796..177809)
/gene="lpxD"
/locus_tag="NMB0180"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional; Region: lpxD; PRK00892"
/db_xref="CDD:234858"
misc_feature complement(177546..177758)
/gene="lpxD"
/locus_tag="NMB0180"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:218175"
misc_feature complement(176874..177488)
/gene="lpxD"
/locus_tag="NMB0180"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature complement(order(176877..176879,176889..176891,
176946..176954,176988..176990,177000..177008,
177024..177026,177054..177062,177072..177074,
177078..177080,177096..177098,177108..177110,
177114..177122,177126..177128,177153..177161,
177168..177170,177174..177176,177180..177182,
177192..177194,177228..177236,177267..177269,
177273..177275,177291..177293,177297..177299,
177333..177335,177339..177341,177345..177347,
177384..177386,177438..177443,177453..177455))
/gene="lpxD"
/locus_tag="NMB0180"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature complement(order(176955..176957,176988..176993,
177042..177050,177063..177068,177096..177101,
177108..177110,177120..177122,177261..177269))
/gene="lpxD"
/locus_tag="NMB0180"
/note="active site"
/db_xref="CDD:100043"
misc_feature complement(order(176988..176993,177042..177047,
177096..177101,177261..177269))
/gene="lpxD"
/locus_tag="NMB0180"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature complement(order(176955..176957,177048..177050,
177063..177068,177108..177110,177120..177122))
/gene="lpxD"
/locus_tag="NMB0180"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene complement(177854..178354)
/locus_tag="NMB0181"
/db_xref="GeneID:902288"
CDS complement(177854..178354)
/locus_tag="NMB0181"
/note="identified by similarity to EGAD:24192; match to
protein family HMM PF03938"
/codon_start=1
/transl_table=11
/product="outer membrane protein OmpH"
/protein_id="NP_273239.1"
/db_xref="GI:15676108"
/db_xref="GeneID:902288"
/translation="MTRLTRAFAAALIGLCCTAGAHADTFQKIGFINTERIYLESKQA
RKIQKTLDSEFSARQDELQKLQREGLDLERQLAEGKLRNAKKAQAEEKWRGLVAAFRK
KQAQFEEDYNLRRNEEFASLQQNANRVIVKIAKQEGYDVILQNVIYVNTQYDVTDSVI
KEMNAR"
misc_feature complement(177857..178342)
/locus_tag="NMB0181"
/note="Outer membrane protein [Cell envelope biogenesis,
outer membrane]; Region: HlpA; COG2825"
/db_xref="CDD:225381"
misc_feature complement(177866..178327)
/locus_tag="NMB0181"
/note="periplasmic chaperone; Provisional; Region:
PRK10780"
/db_xref="CDD:182724"
gene complement(178420..180813)
/gene="omp85"
/locus_tag="NMB0182"
/db_xref="GeneID:902289"
CDS complement(178420..180813)
/gene="omp85"
/locus_tag="NMB0182"
/note="identified by similarity to GP:2460281; match to
protein family HMM PF01103; match to protein family HMM
PF07244"
/codon_start=1
/transl_table=11
/product="outer membrane protein OMP85"
/protein_id="NP_273240.1"
/db_xref="GI:15676109"
/db_xref="GeneID:902289"
/translation="MKLKQIASALMMLGISPLALADFTIQDIRVEGLQRTEPSTVFNY
LPVKVGDTYNDTHGSAIIKSLYATGFFDDVRVETADGQLLLTVIERPTIGSLNITGAK
MLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKF
AQDMEKVTDFYQNNGYFDFRILDTDIQTNEDKTKQTIKITVHEGGRFRWGKVSIEGDT
NEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYSEISVQPLPNAETKT
VDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELL
GYFDNVQFDAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLF
GTGKSAALRASRSKTTLNGSLSFTDPYFTADGVSLGYDVYGKAFDPRKASTSIKQYKT
TTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNTYNKAPKHYADFIKKYGKTDGTDGSFK
GWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKT
FTLMLGGEVGIAGGYGRTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYG
GNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDGKTYDDNSSSATGGRVQNIYG
AGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF"
misc_feature complement(178423..180747)
/gene="omp85"
/locus_tag="NMB0182"
/note="outer membrane protein assembly complex, YaeT
protein; Region: OM_YaeT; TIGR03303"
/db_xref="CDD:234165"
misc_feature complement(180550..180747)
/gene="omp85"
/locus_tag="NMB0182"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(180301..180543)
/gene="omp85"
/locus_tag="NMB0182"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(180028..180294)
/gene="omp85"
/locus_tag="NMB0182"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(179782..180021)
/gene="omp85"
/locus_tag="NMB0182"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(179551..179775)
/gene="omp85"
/locus_tag="NMB0182"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(178423..179472)
/gene="omp85"
/locus_tag="NMB0182"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:216300"
gene complement(180870..182210)
/locus_tag="NMB0183"
/db_xref="GeneID:902290"
CDS complement(180870..182210)
/locus_tag="NMB0183"
/note="identified by similarity to EGAD:8229; match to
protein family HMM PF00595; match to protein family HMM
PF02163; match to protein family HMM TIGR00054"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273241.1"
/db_xref="GI:15676110"
/db_xref="GeneID:902290"
/translation="MHTLLAFIFAILILVSLHEFGHYIVARLCGVKVVRFSVGFGKPF
FTRKRGDTEWCLAPIPLGGYVKMVDTREGEVSEADLPYAFDKQHPAKRIAIVAAGPLT
NLALAVLLYGLSFSFGVTELRPYVGTVEPDTIAARAGFQSGDKIQSVNGTPVADWGSA
QTEIVLNLEAGKVAVGVQTASGAQTVRTIDAAGTPEAGKIAKNQGYIGLMPFKITTVA
GGVEKGSPAEKAGLKPGDRLTAADGKPIASWQEWANLTRQSPGKKITLNYERAGQTHT
ADIRPDTVEQSDHTLIGRVGLRPQPDRAWDAQIRRSYRPSVVRAFGMGWEKTVSHSWT
TLKFFGKLISGNASVSHISGPLTIADIAGQSAELGLQSYLEFLALVSISLGVLNLLPV
PVLDGGHLVFYTAEWIRGKPLGERVQNIGLRFGLALMMLMMAVAFFNDVTRLLG"
misc_feature complement(180879..182168)
/locus_tag="NMB0183"
/note="zinc metallopeptidase RseP; Provisional; Region:
PRK10779"
/db_xref="CDD:182723"
misc_feature complement(<181860..182168)
/locus_tag="NMB0183"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature complement(order(182145..182147,182154..182159))
/locus_tag="NMB0183"
/note="active site"
/db_xref="CDD:100084"
misc_feature complement(<181710..181880)
/locus_tag="NMB0183"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:238489"
misc_feature complement(order(181716..181721,181728..181733,
181860..181862,181866..181877))
/locus_tag="NMB0183"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:238489"
misc_feature complement(181368..181592)
/locus_tag="NMB0183"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:238489"
misc_feature complement(order(181440..181445,181452..181457,
181578..181580,181584..181592))
/locus_tag="NMB0183"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:238489"
misc_feature complement(180882..>181091)
/locus_tag="NMB0183"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:245232"
misc_feature complement(181038..181049)
/locus_tag="NMB0183"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene complement(182245..183429)
/gene="dxr"
/locus_tag="NMB0184"
/db_xref="GeneID:902291"
CDS complement(182245..183429)
/gene="dxr"
/locus_tag="NMB0184"
/EC_number="1.1.1.267"
/note="catalyzes the NADP-dependent rearrangement and
reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to
2-C-methyl-D-erythritol 4-phosphate"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="NP_273242.1"
/db_xref="GI:15676111"
/db_xref="GeneID:902291"
/translation="MTPQVLTILGSTGSIGESTLDVVSRHPEKFRVFALAGHKQVEKL
AAQCQTFHPEYAVVADAEHAARLEALLKRDGTATQVLHGAQALVDVASADEVSGVMCA
IVGAVGLPSALAAAQKGKTIYLANKETLVVSGALFMETARANGAAVLPVDSEHNAVFQ
VLPRDYAGRLNEHGIASIILTASGGPFLTADLNTFDRITPAQAVKHPNWRMGRKISVD
SATMMNKGLELIEAHWLFNCPPDKLEVVIHPQSVIHSMVRYRDGSVLAQLGNPDMRTP
IAYCLGLPERIDSGVGDLDFDALSALTFQKPDFDRFPCLRLAYEAMNAGGAAPCVLNA
ANEAAVAAFLDGQIKFTDIAKTVAHCLAQDFSDGIGDIGGLLAQDARTRAQARAFIGT
LR"
misc_feature complement(182341..183423)
/gene="dxr"
/locus_tag="NMB0184"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Provisional; Region: PRK05447"
/db_xref="CDD:235472"
misc_feature complement(183028..183414)
/gene="dxr"
/locus_tag="NMB0184"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:217176"
misc_feature complement(182722..182988)
/gene="dxr"
/locus_tag="NMB0184"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature complement(182302..182625)
/gene="dxr"
/locus_tag="NMB0184"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:222027"
gene complement(183485..184282)
/gene="cdsA"
/locus_tag="NMB0185"
/db_xref="GeneID:902292"
CDS complement(183485..184282)
/gene="cdsA"
/locus_tag="NMB0185"
/EC_number="2.7.7.41"
/note="identified by similarity to EGAD:46780; match to
protein family HMM PF01148"
/codon_start=1
/transl_table=11
/product="phosphatidate cytidylyltransferase"
/protein_id="NP_273243.1"
/db_xref="GI:15676112"
/db_xref="GeneID:902292"
/translation="MLKQRVITAMWLLPLMLGMLFYAPQWLWAAFCGLIALIALWEYA
RMGGLCKIKTNHYLAATLVFGVVAYAGGWMLPNLVWYVVLAFWLAVMPLWLRFKWRLN
GGWQVYAVGWLLVMPFWFALVSLRPHPDDALPLLAVMGLVWVADICAYFSGKAFGKHK
IAPAISPGKSWEGAIGGAVCVAVYMTAVRSAGWLAFDTGWFDTVLIGLVLTVVSVCGD
LLESWLKRAAGIKDSSKLLPGHGGVFDRTDSLIAVISVYAAMMSVLN"
misc_feature complement(183521..184282)
/gene="cdsA"
/locus_tag="NMB0185"
/note="CDP-diglyceride synthetase [Lipid metabolism];
Region: CdsA; COG0575"
/db_xref="CDD:223648"
misc_feature complement(183491..184276)
/gene="cdsA"
/locus_tag="NMB0185"
/note="Cytidylyltransferase family; Region: CTP_transf_1;
pfam01148"
/db_xref="CDD:216329"
gene complement(184285..185031)
/gene="uppS"
/locus_tag="NMB0186"
/db_xref="GeneID:902293"
CDS complement(184285..185031)
/gene="uppS"
/locus_tag="NMB0186"
/EC_number="2.5.1.31"
/note="identified by similarity to EGAD:35926; match to
protein family HMM PF01255; match to protein family HMM
TIGR00055"
/codon_start=1
/transl_table=11
/product="undecaprenyl pyrophosphate synthetase"
/protein_id="NP_273244.1"
/db_xref="GI:15676113"
/db_xref="GeneID:902293"
/translation="MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGL
DALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNM
RLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGV
SEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGK
ALDDAVASFQKRERRFGRTSEQLPIEQQRN"
misc_feature complement(184309..185031)
/gene="uppS"
/locus_tag="NMB0186"
/note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS);
homodimers which catalyze the successive 1'-4 condensation
of the isopentenyl diphosphate (IPP) molecule to
trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP
to form long-chain polyprenyl...; Region: CIS_IPPS;
cl00230"
/db_xref="CDD:241707"
misc_feature complement(184321..184992)
/gene="uppS"
/locus_tag="NMB0186"
/note="Undecaprenyl pyrophosphate synthase [Lipid
metabolism]; Region: UppS; COG0020"
/db_xref="CDD:223099"
misc_feature complement(184963..184965)
/gene="uppS"
/locus_tag="NMB0186"
/note="catalytic residue [active]"
/db_xref="CDD:238265"
misc_feature complement(184951..184962)
/gene="uppS"
/locus_tag="NMB0186"
/note="putative FPP diphosphate binding site; other site"
/db_xref="CDD:238265"
misc_feature complement(order(184618..184620,184624..184626,
184669..184671,184690..184692,184771..184779,
184783..184788,184828..184842))
/gene="uppS"
/locus_tag="NMB0186"
/note="putative FPP binding hydrophobic cleft; other site"
/db_xref="CDD:238265"
misc_feature complement(order(184417..184419,184429..184431,
184438..184440,184450..184452,184459..184464,
184543..184545,184558..184560,184570..184572,
184597..184599))
/gene="uppS"
/locus_tag="NMB0186"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238265"
misc_feature complement(order(184459..184461,184477..184479))
/gene="uppS"
/locus_tag="NMB0186"
/note="putative IPP diphosphate binding site; other site"
/db_xref="CDD:238265"
gene complement(185087..185644)
/gene="frr"
/locus_tag="NMB0187"
/db_xref="GeneID:902294"
CDS complement(185087..185644)
/gene="frr"
/locus_tag="NMB0187"
/note="Rrf; Frr; ribosome-recycling factor; release factor
4; RF4; recycles ribosomes upon translation termination
along with release factor RF-3 and elongation factor EF-G;
A GTPase-dependent process results in release of 50S from
70S; inhibited by release factor RF-1; essential for
viability; structurally similar to tRNAs"
/codon_start=1
/transl_table=11
/product="ribosome recycling factor"
/protein_id="NP_273245.1"
/db_xref="GI:15676114"
/db_xref="GeneID:902294"
/translation="MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEY
WGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPM
PMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAV
QKLTDKYITEADKLLTAKEEDLMAI"
misc_feature complement(185090..185644)
/gene="frr"
/locus_tag="NMB0187"
/note="ribosome recycling factor; Reviewed; Region: frr;
PRK00083"
/db_xref="CDD:178850"
misc_feature complement(185096..185632)
/gene="frr"
/locus_tag="NMB0187"
/note="Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are 'recycled'
and ready for another...; Region: RRF; cd00520"
/db_xref="CDD:238288"
misc_feature complement(order(185330..185341,185549..185560))
/gene="frr"
/locus_tag="NMB0187"
/note="hinge region; other site"
/db_xref="CDD:238288"
gene complement(185824..186951)
/locus_tag="NMB0188"
/db_xref="GeneID:902295"
CDS complement(185824..186951)
/locus_tag="NMB0188"
/note="identified by similarity to EGAD:9221"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273246.1"
/db_xref="GI:15676115"
/db_xref="GeneID:902295"
/translation="MNTSQRNRLVSRWLNSYERYRYRRLIHAVRLGGAVLFATASARL
LHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGN
LLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWLDSGLMRAMNVLIG
AAIAIAAAKLLPLKSTLMWRFMLADNLADCSKMIAEISNGRRMTRERLEENMAKMRQI
NARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSE
IRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLS
TNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG"
misc_feature complement(185842..>186951)
/locus_tag="NMB0188"
/note="Predicted membrane protein [Function unknown];
Region: COG1289"
/db_xref="CDD:224208"
misc_feature complement(186472..186843)
/locus_tag="NMB0188"
/note="Fusaric acid resistance protein-like; Region:
FUSC_2; pfam13515"
/db_xref="CDD:222189"
gene complement(187027..187102)
/gene="tRNA-Thr-2"
/locus_tag="NMBt08"
/db_xref="GeneID:902296"
tRNA complement(187027..187102)
/gene="tRNA-Thr-2"
/locus_tag="NMBt08"
/product="tRNA-Thr"
/db_xref="GeneID:902296"
gene 187362..187784
/locus_tag="NMB0189"
/db_xref="GeneID:902297"
CDS 187362..187784
/locus_tag="NMB0189"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273247.1"
/db_xref="GI:15676116"
/db_xref="GeneID:902297"
/translation="MFVNEKYPYAALFAGLVFLTLPFALAVHDAFALAFGRTGLLVSV
SDGGFGWRGGWDGTVWFVFGVFAFLNVVVSAGLTKLAYKKMMRRHSRYTLFLSGVAAC
AAAAVAWIFELLLGSGALGGLRGRRCWNMRLPCGWWRC"
gene 187942..188565
/gene="gidB"
/locus_tag="NMB0190"
/db_xref="GeneID:902298"
CDS 187942..188565
/gene="gidB"
/locus_tag="NMB0190"
/note="glucose-inhibited division protein B; SAM-dependent
methyltransferase; methylates the N7 position of guanosine
in position 527 of 16S rRNA"
/codon_start=1
/transl_table=11
/product="16S rRNA methyltransferase GidB"
/protein_id="NP_273248.1"
/db_xref="GI:15676117"
/db_xref="GeneID:902298"
/translation="MERKERLRAGIAAMGLDISETAQDRLLVYVDLLKKWNKTYNLTA
LRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANT
KKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTVHLLKDG
GYWAAMKGVYPQEEIGRLPQDVCVEKVQRLDVPGLDAERHIVILSKR"
misc_feature 187951..188562
/gene="gidB"
/locus_tag="NMB0190"
/note="Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane]; Region: GidB;
COG0357"
/db_xref="CDD:223434"
misc_feature 188152..188427
/gene="gidB"
/locus_tag="NMB0190"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(188164..188184,188236..188241,188314..188322,
188362..188364)
/gene="gidB"
/locus_tag="NMB0190"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 188664..189437
/locus_tag="NMB0191"
/db_xref="GeneID:902299"
CDS 188664..189437
/locus_tag="NMB0191"
/note="identified by similarity to EGAD:5746; match to
protein family HMM PF01656"
/codon_start=1
/transl_table=11
/product="ParA family protein"
/protein_id="NP_273249.1"
/db_xref="GI:15676118"
/db_xref="GeneID:902299"
/translation="MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQG
NATTGSGIDKAGLQSGVYQVLLGDADVQSAAVRSKEGGYAVLGANRALAGAEIELVQE
IAREVRLKNALKAVEEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGIS
DLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNI
RLAEAPSHGMPVMAYDAQAKGTKAYLALADELAARVSGK"
misc_feature 188670..189425
/locus_tag="NMB0191"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Soj;
COG1192"
/db_xref="CDD:224113"
misc_feature 188676..>188792
/locus_tag="NMB0191"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:238997"
misc_feature 188697..188717
/locus_tag="NMB0191"
/note="P-loop; other site"
/db_xref="CDD:238997"
misc_feature 188715..188717
/locus_tag="NMB0191"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:238997"
misc_feature 188733..>189050
/locus_tag="NMB0191"
/note="ArsA ATPase functionas as an efflux pump located on
the inner membrane of the cell. This ATP-driven oxyanion
pump catalyzes the extrusion of arsenite, antimonite and
arsenate. Maintenance of a low intracellular concentration
of oxyanion produces...; Region: ArsA; cd02035"
/db_xref="CDD:238992"
misc_feature order(188784..188789,188799..188801,189039..189050)
/locus_tag="NMB0191"
/note="DTAP/Switch II; other site"
/db_xref="CDD:238992"
misc_feature order(188784..188789,188799..188801)
/locus_tag="NMB0191"
/note="Switch I; other site"
/db_xref="CDD:238992"
misc_feature <189021..189218
/locus_tag="NMB0191"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:238997"
misc_feature 189039..189041
/locus_tag="NMB0191"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:238997"
gene complement(190697..191281)
/gene="rnhB"
/locus_tag="NMB0192"
/db_xref="GeneID:902300"
CDS complement(190697..191281)
/gene="rnhB"
/locus_tag="NMB0192"
/EC_number="3.1.26.4"
/note="RNH2; RNase HII; binds manganese; endonuclease
which specifically degrades the RNA of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease HII"
/protein_id="NP_273250.1"
/db_xref="GI:15676119"
/db_xref="GeneID:902300"
/translation="MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSE
KKRDALAEMIKNQAVEWHVAAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDG
NRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
TKQHLEALEKYGVLPEHRRDFAPVRNLLAQQALF"
misc_feature complement(190727..191266)
/gene="rnhB"
/locus_tag="NMB0192"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature complement(order(190880..190882,190937..190939,
190979..190981,191039..191041,191048..191056,
191246..191257))
/gene="rnhB"
/locus_tag="NMB0192"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature complement(order(190922..190924,190979..190981,
191252..191257))
/gene="rnhB"
/locus_tag="NMB0192"
/note="active site"
/db_xref="CDD:187695"
gene complement(191350..193245)
/gene="gidA"
/locus_tag="NMB0193"
/db_xref="GeneID:902301"
CDS complement(191350..193245)
/gene="gidA"
/locus_tag="NMB0193"
/note="GidA; glucose-inhibited cell division protein A;
involved in the 5-carboxymethylaminomethyl modification
(mnm(5)s(2)U) of the wobble uridine base in some tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification protein GidA"
/protein_id="NP_273251.1"
/db_xref="GI:15676120"
/db_xref="GeneID:902301"
/translation="MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIET
LGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQA
DRILYKAAIREMLENQENLDLFQQAVEDVTLDGERISGVITAMGVEFKARAVVLTAGT
FLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELKLPQGRLKTGTPPRIDGRTIDFSQL
TEQPGDTPVPVMSVRGNADMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVG
PRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGL
ENAHILRPGYAIEYDYFDPRNLKASLETKTIAGLFFAGQINGTTGYEEAAAQGLLAGA
NAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMR
LTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLKTTWYTPQKLAEGEQIRVFGQKLSR
EANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVEIQVKYQGYIDRQNEEIDSR
RDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLK
RGFKDAK"
misc_feature complement(191353..193230)
/gene="gidA"
/locus_tag="NMB0193"
/note="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated; Region: PRK05192"
/db_xref="CDD:235362"
misc_feature complement(191974..>192306)
/gene="gidA"
/locus_tag="NMB0193"
/note="NAD(FAD)-utilizing enzyme possibly involved in
translation [Translation, ribosomal structure and
biogenesis]; Region: Gid; COG1206"
/db_xref="CDD:224127"
misc_feature complement(191383..191598)
/gene="gidA"
/locus_tag="NMB0193"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene complement(193571..194998)
/locus_tag="NMB0194"
/db_xref="GeneID:902302"
CDS complement(193571..194998)
/locus_tag="NMB0194"
/note="identified by similarity to EGAD:28821; match to
protein family HMM PF01235; match to protein family HMM
TIGR00835"
/codon_start=1
/transl_table=11
/product="amino acid symporter"
/protein_id="NP_273252.1"
/db_xref="GI:15676121"
/db_xref="GeneID:902302"
/translation="MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQF
RLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVF
WMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSL
IFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVV
PLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKR
GLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYG
DLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITA
VFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKL
KMGKDPEFKLSEHPGLKRRIKSDVW"
misc_feature complement(193634..194980)
/locus_tag="NMB0194"
/note="Na+/alanine symporter [Amino acid transport and
metabolism]; Region: AlsT; COG1115"
/db_xref="CDD:224040"
misc_feature complement(193613..194848)
/locus_tag="NMB0194"
/note="Sodium:alanine symporter family; Region:
Na_Ala_symp; pfam01235"
/db_xref="CDD:216380"
gene 195140..196147
/gene="pdxA"
/locus_tag="NMB0195"
/db_xref="GeneID:902303"
CDS 195140..196147
/gene="pdxA"
/locus_tag="NMB0195"
/note="catalyzes oxidation of
4-(phosphohydroxy)-L-threonine into
2-amino-3-oxo-4-(phosphohydroxy)butyric acid which
decarboxylates to form
1-amino-3-(phosphohydroxy)propan-2-one
(3-amino-2-oxopropyl phosphate)"
/codon_start=1
/transl_table=11
/product="4-hydroxythreonine-4-phosphate dehydrogenase"
/protein_id="NP_273253.1"
/db_xref="GI:15676122"
/db_xref="GeneID:902303"
/translation="MFGANTMKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGD
KNLLRARAEALGKSVVLRDFDPESGGAAYGELEVLHIPAVEAVEAGKLNPANAAYVLQ
LLDTALAGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLA
GKGLRVALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFGIKNPKILVAGLNPHA
GEGGHLGHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGL
PVLKYHSFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGS
L"
misc_feature 195155..196141
/gene="pdxA"
/locus_tag="NMB0195"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Reviewed; Region: pdxA; PRK00232"
/db_xref="CDD:234696"
misc_feature 195158..196135
/gene="pdxA"
/locus_tag="NMB0195"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Validated; Region: pdxA; PRK03743"
/db_xref="CDD:179641"
gene complement(197445..200204)
/gene="rne"
/locus_tag="NMB0196"
/db_xref="GeneID:902304"
CDS complement(197445..200204)
/gene="rne"
/locus_tag="NMB0196"
/EC_number="3.1.4.-"
/note="identified by similarity to GP:49116; match to
protein family HMM PF00575; match to protein family HMM
TIGR00757"
/codon_start=1
/transl_table=11
/product="ribonuclease E"
/protein_id="NP_273254.1"
/db_xref="GI:15676123"
/db_xref="GeneID:902304"
/translation="MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKG
IITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQV
EKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPN
GMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRD
YFRPDIGEILVDNQEVYDQVAEFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAF
SRSVSLPSGGAIVIDHTEALVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLR
DLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPA
LGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEAMKDNTGEVRAQVPVDVATFLLN
EKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDE
SAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQA
APAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAET
RNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETEVQTGKRRRNGSRSE
RGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNN
QRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVA
ERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAE
QARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEVATVPAEEMIQV
ETRQG"
misc_feature complement(198738..200204)
/gene="rne"
/locus_tag="NMB0196"
/note="Ribonucleases G and E [Translation, ribosomal
structure and biogenesis]; Region: CafA; COG1530"
/db_xref="CDD:224447"
misc_feature complement(199836..200108)
/gene="rne"
/locus_tag="NMB0196"
/note="S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of RNA.
In addition to its role in mRNA degradation, RNase E has
also been implicated in the processing of rRNA, and...;
Region: S1_RNase_E; cd04453"
/db_xref="CDD:239900"
misc_feature complement(order(199914..199916,199926..199928,
200076..200078))
/gene="rne"
/locus_tag="NMB0196"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239900"
misc_feature complement(order(199842..199844,199872..199877,
199884..199886,199893..199895,200004..200006))
/gene="rne"
/locus_tag="NMB0196"
/note="oligonucleotide binding site [chemical binding];
other site"
/db_xref="CDD:239900"
gene 200328..200615
/locus_tag="NMB0197"
/db_xref="GeneID:902305"
CDS 200328..200615
/locus_tag="NMB0197"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273255.1"
/db_xref="GI:15676124"
/db_xref="GeneID:902305"
/translation="MHVPENRVRKGRIQKAIKIDAAVCLPRSERCGRKNGGRLLLVIV
MPVFWAVCVWDLGPAAVLLPRRNGKINSNLITFCACRLGTGAGKMLCGVRF"
gene 200697..201689
/gene="rluC"
/locus_tag="NMB0198"
/db_xref="GeneID:902306"
CDS 200697..201689
/gene="rluC"
/locus_tag="NMB0198"
/note="identified by similarity to EGAD:7861; match to
protein family HMM PF00849; match to protein family HMM
PF01479; match to protein family HMM TIGR00005"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
C"
/protein_id="NP_273256.1"
/db_xref="GI:15676125"
/db_xref="GeneID:902306"
/translation="MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRI
IRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFDVVYEDDA
LLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMVAKKRSA
LVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVKLPLFKYTGAQGEKMVRVSADGQSAH
TVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQ
ANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKAELPPDLAQFAVMLENGTKM"
misc_feature 200724..201647
/gene="rluC"
/locus_tag="NMB0198"
/note="23S rRNA pseudouridylate synthase C; Provisional;
Region: PRK11025"
/db_xref="CDD:182909"
misc_feature 200763..201014
/gene="rluC"
/locus_tag="NMB0198"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature order(200766..200768,200802..200807,200811..200816,
200820..200825,200832..200837,200841..200843,
200862..200867,200868..200882,200886..200888)
/gene="rluC"
/locus_tag="NMB0198"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
misc_feature 201003..201590
/gene="rluC"
/locus_tag="NMB0198"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(201120..201131,201462..201464)
/gene="rluC"
/locus_tag="NMB0198"
/note="active site"
/db_xref="CDD:211346"
gene 201737..202909
/gene="lpxB"
/locus_tag="NMB0199"
/db_xref="GeneID:902307"
CDS 201737..202909
/gene="lpxB"
/locus_tag="NMB0199"
/EC_number="2.4.1.182"
/note="catalyzes the formation of lipid A disaccharide
from UDP-2,3-diacylglucosamine and
2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is
a precursor of lipid A that anchors LPS to the OM"
/codon_start=1
/transl_table=11
/product="lipid-A-disaccharide synthase"
/protein_id="NP_273257.1"
/db_xref="GI:15676126"
/db_xref="GeneID:902307"
/translation="MWGQTNMADKKSPLIAVSVGEASGDLLGAHLIRAIRKRCPQARF
TGIGGELMKAEGFESLYDQERLAVRGFVEVVRRLPEILRIRRGLVRDLLSLKPDVFVG
IDAPDFNLGVAEKLKRSGIPTVHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLY
LDAGGRAEFVGHPMAQLMPLEDDRETARQTLGVDAGIPVFALLPGSRVSEIDYMAPVF
FQTALLLLERYPAARFLLPAATEATKRRLAEVLQRPEFAGLPLTVIDRQSETVCRAAD
AVLVTSGTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPEL
LQSEAKPEKLAAALADWYEHPDKVAALQQDFRALHLLLKKDTADLAARAVLEEAGC"
misc_feature 201773..202834
/gene="lpxB"
/locus_tag="NMB0199"
/note="Lipid A disaccharide synthetase [Cell envelope
biogenesis, outer membrane]; Region: LpxB; COG0763"
/db_xref="CDD:223834"
misc_feature 201779..202747
/gene="lpxB"
/locus_tag="NMB0199"
/note="ipid-A-disaccharide synthase; Provisional; Region:
PRK14089"
/db_xref="CDD:237606"
gene complement(203119..203508)
/locus_tag="NMB0200"
/db_xref="GeneID:902308"
CDS complement(203119..203508)
/locus_tag="NMB0200"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273258.1"
/db_xref="GI:15676127"
/db_xref="GeneID:902308"
/translation="MNVKIKYNLLEYCEYLGGIFGVYKNYLNMDIKDPNLKIRFFDFL
EELLSDGVIELCDYRENPPKILTGSPKTQVDELRRIWPDMEEMLLYFPDNPWFYVEHF
WWGATCPIELTQLPKIEIYEEQMKQGK"
misc_feature complement(203137..203508)
/locus_tag="NMB0200"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3792"
/db_xref="CDD:226315"
gene 203731..204141
/locus_tag="NMB0201"
/db_xref="GeneID:902309"
CDS 203731..204141
/locus_tag="NMB0201"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273259.1"
/db_xref="GI:15676128"
/db_xref="GeneID:902309"
/translation="MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFP
QEIPTPNYTDWVKIKFKQFSYLKFIYGYATKNQDKNIKNVLELGELKQDDEILDYGGA
LEVIGSRYDLPTGFSIDIVCREIELEFLDQESFN"
gene 204159..204332
/locus_tag="NMB0202"
/db_xref="GeneID:902310"
CDS 204159..204332
/locus_tag="NMB0202"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273260.1"
/db_xref="GI:15676129"
/db_xref="GeneID:902310"
/translation="MLSRQLYRISFSVETPPLGHLSFGAVESDFIWEGRNPFRIRATH
RATLYVSSCVLKH"
gene complement(204405..205214)
/gene="dapB"
/locus_tag="NMB0203"
/db_xref="GeneID:902311"
CDS complement(204405..205214)
/gene="dapB"
/locus_tag="NMB0203"
/EC_number="1.3.1.26"
/note="catalyzes the reduction of 2,3-dihydrodipicolinate
to 2,3,4,5-tetrahydrodipicolinate in lysine and
diaminopimelate biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="NP_273261.1"
/db_xref="GI:15676130"
/db_xref="GeneID:902311"
/translation="MTPLKIAIAGANGRMGRVLVEAVNNHPDTVLSGALEHSGSEALG
LDAGYAVGLKTGIAISDDVDAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTG
FDDTGKAAIHTAAEKTGIVFAANFSVGVNLTFHILDTVARVLNEGYDIEIIEGHHRHK
VDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHT
ALFATDGERVEITHKASSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR"
misc_feature complement(204417..205208)
/gene="dapB"
/locus_tag="NMB0203"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:234595"
misc_feature complement(204837..205205)
/gene="dapB"
/locus_tag="NMB0203"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:216304"
misc_feature complement(204423..204830)
/gene="dapB"
/locus_tag="NMB0203"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:218479"
gene complement(205224..205601)
/locus_tag="NMB0204"
/db_xref="GeneID:902312"
CDS complement(205224..205601)
/locus_tag="NMB0204"
/note="identified by similarity to SP:P23089; match to
protein family HMM PF04355"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="NP_273262.1"
/db_xref="GI:15676131"
/db_xref="GeneID:902312"
/translation="MNKTLILALSALLGLAACSAERVSLFPSYKLKIIQGNELEPRAV
AALRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLV
RTEGDVLQNAAEALKDRQNTDKP"
misc_feature complement(205227..>205517)
/locus_tag="NMB0204"
/note="Outer membrane lipoprotein OmlA (small protein A)
[Cell envelope biogenesis, outer membrane]; Region: OlmA;
COG2913"
/db_xref="CDD:225465"
misc_feature complement(205284..205496)
/locus_tag="NMB0204"
/note="SmpA / OmlA family; Region: SmpA_OmlA; pfam04355"
/db_xref="CDD:202983"
gene 205820..206254
/gene="fur"
/locus_tag="NMB0205"
/db_xref="GeneID:902313"
CDS 205820..206254
/gene="fur"
/locus_tag="NMB0205"
/note="identified by similarity to EGAD:14408; match to
protein family HMM PF01475"
/codon_start=1
/transl_table=11
/product="ferric uptake regulation protein"
/protein_id="NP_273263.1"
/db_xref="GI:15676132"
/db_xref="GeneID:902313"
/translation="MEKFNNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRI
LLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVT
EFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR"
misc_feature 205877..206224
/gene="fur"
/locus_tag="NMB0205"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature order(205922..205924,206066..206068,206087..206089,
206093..206095,206126..206128)
/gene="fur"
/locus_tag="NMB0205"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature 205976..206020
/gene="fur"
/locus_tag="NMB0205"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature order(206084..206086,206090..206092,206147..206149,
206198..206200)
/gene="fur"
/locus_tag="NMB0205"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(206099..206107,206153..206158,206183..206191,
206195..206221)
/gene="fur"
/locus_tag="NMB0205"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature order(206102..206104,206111..206113,206222..206224)
/gene="fur"
/locus_tag="NMB0205"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 206324..207049
/gene="aat"
/locus_tag="NMB0206"
/db_xref="GeneID:902314"
CDS 206324..207049
/gene="aat"
/locus_tag="NMB0206"
/EC_number="2.3.2.6"
/note="leucyltransferase; phenylalanyltransferse;
functions in the N-end rule pathway; transfers Leu, Phe,
Met, from aminoacyl-tRNAs to N-terminal of proteins with
Arg or Lys"
/codon_start=1
/transl_table=11
/product="leucyl/phenylalanyl-tRNA--protein transferase"
/protein_id="NP_273264.1"
/db_xref="GI:15676133"
/db_xref="GeneID:902314"
/translation="MRIPLLAPDNYAFPDPAYALARCDGLVGVSGDLDAGRLLEAYRN
GVFPWFSRDGWFFWYAVGPRAVVFPDRLHIPRSLAKTLRNGSYRVAVNGCFAEVVAHC
AAAARPNQDGTWIAPEFQTAYLKLHEMGYAHSFECHYPDESGETRLAGGFYGVQIGRV
FYGESMFALQPDASKIAFACAVPFLADLGVELIDCQQDTEHMRRFGSELLPFADFAER
LRMLNAVPLKEEIGRREVACKGL"
misc_feature 206354..207034
/gene="aat"
/locus_tag="NMB0206"
/note="Leu/Phe-tRNA-protein transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Aat;
COG2360"
/db_xref="CDD:225235"
gene complement(207302..208333)
/gene="gapA-1"
/locus_tag="NMB0207"
/db_xref="GeneID:902315"
CDS complement(207302..208333)
/gene="gapA-1"
/locus_tag="NMB0207"
/EC_number="1.2.1.12"
/note="catalyzes the formation of 3-phospho-D-glyceroyl
phosphate from D-glyceraldehyde 3-phosphate"
/codon_start=1
/transl_table=11
/product="glyceraldehyde-3-phosphate dehydrogenase"
/protein_id="NP_273265.1"
/db_xref="GI:15676134"
/db_xref="GeneID:902315"
/translation="MGIKVAINGYGRIGRQVLRAIYDYQIQDQLQIVAVNASGSLETN
AHLTKFDTVHGRFEADVSHDGGNLIVNGDKIPFFSTRNPAELPWKELGVDLVMECTGA
FTSKEKAKIHLESGAKKVLISAPGGDDVDATVVYGVNDSVLTADMTVVSNASCTTNCL
SPVAKVLSESVGIVKGAMTTIHALTNDQTVTDVRHKDLRRARSGVENMIPTKTGAAKA
VGLVLPELKGRLDGLAIRVPTVNVSLVDLSFQAARDTTVEEINALMKAASEAGPLKGV
LGYNTLPLVSMDFNHTTEASHFDATLTKVVDGNMVKVFAWYDNEWGFSCQMLNTARRM
FGLEVRPLK"
misc_feature complement(207314..208327)
/gene="gapA-1"
/locus_tag="NMB0207"
/note="Glyceraldehyde-3-phosphate
dehydrogenase/erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism]; Region: GapA;
COG0057"
/db_xref="CDD:223135"
misc_feature complement(207869..208327)
/gene="gapA-1"
/locus_tag="NMB0207"
/note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain; Region: Gp_dh_N; smart00846"
/db_xref="CDD:214851"
misc_feature complement(207383..207856)
/gene="gapA-1"
/locus_tag="NMB0207"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; pfam02800"
/db_xref="CDD:217235"
gene complement(208532..209371)
/locus_tag="NMB0208"
/db_xref="GeneID:902316"
CDS complement(208532..209371)
/locus_tag="NMB0208"
/note="identified by similarity to EGAD:90639; match to
protein family HMM PF00037; match to protein family HMM
PF04060; match to protein family HMM TIGR01944"
/codon_start=1
/transl_table=11
/product="ferredoxin, 4Fe-4S type"
/protein_id="NP_273266.1"
/db_xref="GI:15676135"
/db_xref="GeneID:902316"
/translation="MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPG
GETVIRDISALLGKPFVAPAKTQAKALARIDETACIGCTACIRACPADAIMGAGKLMH
TVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARTRYLK
RNERKQREADERKAMLAEREAAVRNARPQTPDTPKKPTFNPADLIAKAMAKAQTQQDR
LAAADNRKDYQAKQIAEARERAELRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQN
TAS"
misc_feature complement(208991..209350)
/locus_tag="NMB0208"
/note="ferredoxin; Provisional; Region: PRK08764"
/db_xref="CDD:181550"
misc_feature complement(209240..209341)
/locus_tag="NMB0208"
/note="Putative Fe-S cluster; Region: FeS; cl17515"
/db_xref="CDD:248069"
misc_feature complement(209090..209158)
/locus_tag="NMB0208"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:215671"
misc_feature complement(209000..209065)
/locus_tag="NMB0208"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:215671"
gene 209520..211496
/gene="kefB"
/locus_tag="NMB0209"
/db_xref="GeneID:902317"
CDS 209520..211496
/gene="kefB"
/locus_tag="NMB0209"
/note="identified by similarity to EGAD:29394; match to
protein family HMM PF02080; match to protein family HMM
PF02254"
/codon_start=1
/transl_table=11
/product="glutathione-regulated potassium-efflux system
protein"
/protein_id="NP_273267.1"
/db_xref="GI:15676136"
/db_xref="GeneID:902317"
/translation="MNEFSLAPIVIVLLVSVITVILCRKFNIPSMLGYLLVGFLAGPG
MLSLIPKSHATDYLGEIGIVFLMFSIGLEFSLPKLRAMRRLVFGLGGLQVGITMLSVM
GILMLTGVPFNWAFAVSGALAMSSTAIVSRILSEKTELGQPHGQMAMGVLLMQDIAVV
PLMILIPALAGGGDGNIWAALGLAFAKMLLTLGLLFFVGSKIMSRWFRMVAKRKSSEL
FMINVLLVTLGVAYLTELEGLSMALGAFVAGMLLSETEYRFQVEDDIRPFRDILLGFF
FITVGMKLDIQALIGGWRQVLMLLAMLLVLKALVVFAIAFKMKHSVGDSLKTALYLAQ
GGEFGFVMLAIAGQLDMVSPEWEQAATAAVLLSMIIAPFLLGGSDALVGRLVKSSWDM
KSLDLHSMLVETMSKSDHVLIVGFGRGGQTVGRVLAQEDIPYFALDLDIARVQVARSA
GEPVSFGDAKRREVLEAAGLGRAKMVVVTLNNMHETQHVLDNVLSMYPNMPVYVRATN
DDYVKTFTDIGAEEAVSDTKETGLVLAGYAMLGNGASYRHVYQTMANIRHSRYAALEG
LFVGSDDEAGFGENGETVRHAFPLAAEAYAVGKTVGTLPMAAYGIKLLFVRRRTGRIE
NPDASFTLEGGDVLVVAGKKEEIISFENWSLQGI"
misc_feature 209586..210704
/gene="kefB"
/locus_tag="NMB0209"
/note="Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: KefB;
COG0475"
/db_xref="CDD:223551"
misc_feature 209592..211109
/gene="kefB"
/locus_tag="NMB0209"
/note="putative cation:proton antiport protein;
Provisional; Region: PRK10669"
/db_xref="CDD:182633"
misc_feature 210750..211478
/gene="kefB"
/locus_tag="NMB0209"
/note="K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism]; Region: TrkA;
COG0569"
/db_xref="CDD:223643"
misc_feature 210750..211094
/gene="kefB"
/locus_tag="NMB0209"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:216949"
misc_feature 211275..211478
/gene="kefB"
/locus_tag="NMB0209"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:216867"
gene 211566..211641
/gene="tRNA-Val-1"
/locus_tag="NMBt09"
/db_xref="GeneID:902318"
tRNA 211566..211641
/gene="tRNA-Val-1"
/locus_tag="NMBt09"
/product="tRNA-Val"
/db_xref="GeneID:902318"
gene 211674..211750
/gene="tRNA-Asp-1"
/locus_tag="NMBt10"
/db_xref="GeneID:902319"
tRNA 211674..211750
/gene="tRNA-Asp-1"
/locus_tag="NMBt10"
/product="tRNA-Asp"
/db_xref="GeneID:902319"
gene 211790..211865
/gene="tRNA-Val-2"
/locus_tag="NMBt11"
/db_xref="GeneID:902320"
tRNA 211790..211865
/gene="tRNA-Val-2"
/locus_tag="NMBt11"
/product="tRNA-Val"
/db_xref="GeneID:902320"
gene 211898..211974
/gene="tRNA-Asp-2"
/locus_tag="NMBt12"
/db_xref="GeneID:902321"
tRNA 211898..211974
/gene="tRNA-Asp-2"
/locus_tag="NMBt12"
/product="tRNA-Asp"
/db_xref="GeneID:902321"
gene 212089..212411
/locus_tag="NMB0210"
/note="site-specific DNA methylase, truncation; comparison
of this gene to its homologs suggests this gene has been
truncated; identified by similarity to EGAD:8813"
/pseudo
/db_xref="GeneID:902322"
gene complement(212715..214100)
/gene="sdaA"
/locus_tag="NMB0211"
/db_xref="GeneID:902323"
CDS complement(212715..214100)
/gene="sdaA"
/locus_tag="NMB0211"
/EC_number="4.3.1.17"
/note="identified by similarity to GP:3402236; match to
protein family HMM PF03313; match to protein family HMM
PF03315; match to protein family HMM TIGR00720"
/codon_start=1
/transl_table=11
/product="L-serine dehydratase"
/protein_id="NP_273268.1"
/db_xref="GI:15676137"
/db_xref="GeneID:902323"
/translation="MISIFDIFKIGIGPSSSHTVGPMKAAAAFAAGLDAQAVRIVIDI
YGSLALTGYGHGTFDALMLGLEGSLPHDIPLAGIPERLERIRTQHILRLNGQEIRFIP
DRDLNILGNQVLPKHPNSLRFTAYASDGTVLNEQVYYSVGGGFVVTEEDFDRQAETEK
AVPYPYTSCAELLARCRLNRLDISEVVLANEAALAGCGEAEIRRRAAAVAEVMEGCIK
RGLGADGELPSGLNVRRRAPQLAAKLKVLRETEIVNTQLWPMVYAMAVNEENAAGGRV
VTAPTNGAAGIIPAVLHYFRKFNPHATQERVENFLLTAGAIGILYKTNASISGADVGC
QGEVGVACSMAAGAYAEVIGGTPKQVENAAEMAMEHHLGLTCDPVGGLVQIPCIERNG
IAAEKALKLGTLALLEDGTDKKVSLDEVIRTMLQTGRDMKATYKETSLAGLAATLRKK
AVPVSVRVVEC"
misc_feature complement(212760..214097)
/gene="sdaA"
/locus_tag="NMB0211"
/note="L-serine dehydratase, iron-sulfur-dependent, single
chain form; Region: sda_mono; TIGR00720"
/db_xref="CDD:188076"
misc_feature complement(213639..214094)
/gene="sdaA"
/locus_tag="NMB0211"
/note="Serine dehydratase beta chain; Region: SDH_beta;
pfam03315"
/db_xref="CDD:217489"
misc_feature complement(212763..213566)
/gene="sdaA"
/locus_tag="NMB0211"
/note="Serine dehydratase alpha chain; Region: SDH_alpha;
pfam03313"
/db_xref="CDD:217488"
gene complement(214197..216587)
/gene="gyrB"
/locus_tag="NMB0212"
/db_xref="GeneID:902324"
CDS complement(214197..216587)
/gene="gyrB"
/locus_tag="NMB0212"
/EC_number="5.99.1.3"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="NP_273269.1"
/db_xref="GI:15676138"
/db_xref="GeneID:902324"
/translation="MTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMV
FEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVL
HAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKI
VGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHES
FALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNI
PQRDGGTHLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPK
FSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAR
EITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLK
GKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAH
IRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEK
AKIISDGRTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENA
DKAVAELSGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTL
TQTAAALKGMVGEGAKLYKGENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPE
QLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA"
misc_feature complement(214203..216581)
/gene="gyrB"
/locus_tag="NMB0212"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:237860"
misc_feature complement(<216321..216470)
/gene="gyrB"
/locus_tag="NMB0212"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature complement(216438..216440)
/gene="gyrB"
/locus_tag="NMB0212"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(order(216345..216347,216351..216353))
/gene="gyrB"
/locus_tag="NMB0212"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature complement(215448..215921)
/gene="gyrB"
/locus_tag="NMB0212"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:238419"
misc_feature complement(215766..215768)
/gene="gyrB"
/locus_tag="NMB0212"
/note="anchoring element; other site"
/db_xref="CDD:238419"
misc_feature complement(order(215574..215576,215580..215585,
215592..215594))
/gene="gyrB"
/locus_tag="NMB0212"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238419"
misc_feature complement(order(215568..215570,215574..215576))
/gene="gyrB"
/locus_tag="NMB0212"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238419"
misc_feature complement(214983..215327)
/gene="gyrB"
/locus_tag="NMB0212"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature complement(order(215073..215075,215079..215081,
215085..215087,215295..215297,215304..215309))
/gene="gyrB"
/locus_tag="NMB0212"
/note="active site"
/db_xref="CDD:173786"
misc_feature complement(order(215085..215087,215307..215309))
/gene="gyrB"
/locus_tag="NMB0212"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature complement(214233..214418)
/gene="gyrB"
/locus_tag="NMB0212"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 216743..217729
/locus_tag="NMB0213"
/db_xref="GeneID:902325"
CDS 216743..217729
/locus_tag="NMB0213"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273270.1"
/db_xref="GI:15676139"
/db_xref="GeneID:902325"
/translation="MKRYVCLRHQVGDCPVKWQKRFFATKIYTLYFSDRGAEMEIWNM
LDTWLGAVPIRAEAVESVAAVAALLLARALLLNIHFKRHPDFGIESKRRFLVASRNIT
LLLVLFSLAFIWSAQIQTLALSMFAVAAAVVVATKELIMCLSGSILRSATQQYSVGDY
IEINGLRGRVVDINLLNTLMMQVGPNPLVGQLAGTTVSFPNSLLLSHPVRRDNILGDY
VIHTVEIPVPIHLDSDEAVCRLKAVLEPLCAPYIPAIQRHLENVQAEKLFITPAARPR
VTRVPYDDKAYRIIVRFASPVSKRLEIQQAVMDEFLRVQYRLLNHPAGSETL"
misc_feature <216986..217681
/locus_tag="NMB0213"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:223740"
misc_feature 217043..>217369
/locus_tag="NMB0213"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 217817..219853
/gene="prlC"
/locus_tag="NMB0214"
/db_xref="GeneID:902326"
CDS 217817..219853
/gene="prlC"
/locus_tag="NMB0214"
/EC_number="3.4.24.70"
/note="identified by similarity to EGAD:28851; match to
protein family HMM PF01432"
/codon_start=1
/transl_table=11
/product="oligopeptidase A"
/protein_id="NP_273271.1"
/db_xref="GI:15676140"
/db_xref="GeneID:902326"
/translation="MTDNALLHLGEEPRFDQIKTEDIKPALQTAIAEAREQIAAIKAQ
THTGWANTVEPLTGITERVGRIWGVVSHLNSVADTPELRAVYNELMPEITVFFTEIGQ
DIELYNRFKTIKNSPEFDTLSPAQKTKLNHDLRDFVLSGAELPPEQQAELAKLQTEGA
QLSAKFSQNVLDATDAFGIYFDDAAPLAGIPEDALAMFAAAAQSESKTGYKIGLQIPH
YLAVIQYADNRELREQIYRAYVTRASELSDDGKFDNTANIDRTLANALQTAKLLGFKN
YAELSLATKMADTPEQVLNFLHDLARRAKPYAEKDLAEVKAFARESLNLADLQPWDLG
YASEKLREAKYAFSETEVKKYFPVGKVLNGLFAQIKKLYGIGFTEKTVPVWHKDVRYF
ELQQNGETIGGVYMDLYAREGKRGGAWMNDYKGRRRFSDGTLQLPTAYLVCNFAPPVG
GREARLSHDEILILFHETGHGLHHLLTQVDELGVSGINGVEWDAVELPSQFMENFVWE
YNVLAQMSAHEETGVPLPKELFDKMLAAKNFQRGMFLVRQMEFALFDMMIYSEDDEGR
LKNWQQVLDSVRKKVAVIQPPEYNRFALSFGHIFAGGYSAGYYSYAWAEVLSADAYAA
FEESDDVAATGKRFWQEILAVGGSRSAAESFKAFRGREPSIDALLRHSGFDNAV"
misc_feature 217817..219844
/gene="prlC"
/locus_tag="NMB0214"
/note="Zn-dependent oligopeptidases [Amino acid transport
and metabolism]; Region: Dcp; COG0339"
/db_xref="CDD:223416"
misc_feature 217877..219838
/gene="prlC"
/locus_tag="NMB0214"
/note="Peptidase family M3 dipeptidyl carboxypeptidase
(DCP); Region: M3A_DCP; cd06456"
/db_xref="CDD:188995"
misc_feature order(219068..219076,219212..219217,219224..219226,
219302..219304,219311..219313,219458..219460,
219584..219589,219605..219610,219620..219628,
219638..219640,219647..219649)
/gene="prlC"
/locus_tag="NMB0214"
/note="active site"
/db_xref="CDD:188995"
misc_feature order(219212..219214,219224..219226,219302..219304)
/gene="prlC"
/locus_tag="NMB0214"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:188995"
gene complement(220476..221042)
/locus_tag="NMB0215"
/db_xref="GeneID:902327"
CDS complement(220476..221042)
/locus_tag="NMB0215"
/note="identified by similarity to EGAD:32789; match to
protein family HMM PF02659"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273272.1"
/db_xref="GI:15676141"
/db_xref="GeneID:902327"
/translation="MGFYALLLIALGMSMDAFAVALAKGAAVRMPPRKIAATALVFGT
VEALTPLAGWVGGFYAKPFISEWDHWVAFVLLGGLGLKMMREGLSGEAEDVRESKRES
LWMTVLTAFGTSIDSMIVGVGLAFMEVNIAFAAAIIGMATTVMVAVGLTAGRALGVLF
GRCAEFAGGLVLIAIGTWTLLSHLGLIQ"
misc_feature complement(220485..221042)
/locus_tag="NMB0215"
/note="Predicted membrane protein [Function unknown];
Region: COG1971"
/db_xref="CDD:224882"
misc_feature complement(220803..>220952)
/locus_tag="NMB0215"
/note="Domain of unknown function DUF; Region: DUF204;
pfam02659"
/db_xref="CDD:217168"
misc_feature complement(220515..220706)
/locus_tag="NMB0215"
/note="Domain of unknown function DUF; Region: DUF204;
pfam02659"
/db_xref="CDD:217168"
gene complement(221438..222952)
/gene="kat"
/locus_tag="NMB0216"
/db_xref="GeneID:902328"
CDS complement(221438..222952)
/gene="kat"
/locus_tag="NMB0216"
/note="identified by similarity to EGAD:21555; match to
protein family HMM PF00199"
/codon_start=1
/transl_table=11
/product="catalase"
/protein_id="NP_273273.1"
/db_xref="GI:15676142"
/db_xref="GeneID:902328"
/translation="MTTSKCPVTHLTMNNGAPVADNQNSLTAGPRGPLLAQDLWLNEK
LADFVREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFTTVAG
ERGAADAERDIRGFALKFYTEEGNWDVVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNM
RSATNNWDFWTLLPEALHQVTIVMSDRGIPAGYRHMHGFGSHTYSFWNEAGERFWVKF
HFRTQQGIKNLTNEEAAKIIADDRESHQRDLYEAIERGEFPKWTMYIQVMPEADAEKV
PYHPFDLTKVWPKKDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGVGASPDKM
LQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDGQGRADGNYGSLPHYEPNSF
GQWQQQPDFAEPPLKINGDAAHWDYRQDDDDYFSQPRALFNLMNDAQKQALFGNTAAA
MGDAPDFIKYRHIRNCYRCDPAYGEGVAKALGLTVEDAQAARATDPALGQAGLL"
misc_feature complement(221489..222952)
/gene="kat"
/locus_tag="NMB0216"
/note="Catalase [Inorganic ion transport and metabolism];
Region: KatE; COG0753"
/db_xref="CDD:223824"
misc_feature complement(221510..222799)
/gene="kat"
/locus_tag="NMB0216"
/note="Clade 3 of the heme-binding enzyme catalase;
Region: catalase_clade_3; cd08156"
/db_xref="CDD:163712"
misc_feature complement(order(221570..221572,221582..221584,
221588..221590,221594..221599,221780..221797,
221825..221833,221837..221839,221846..221848,
221852..221857,221867..221869,221879..221890,
221894..221899,221903..221911,221918..221923,
221930..221938,221945..221947,221954..221956,
221960..221962,221984..221989,222008..222010,
222017..222019,222023..222028,222032..222034,
222110..222112,222116..222118,222131..222136,
222203..222205,222212..222217,222224..222226,
222236..222241,222248..222250,222257..222259,
222449..222451,222458..222460,222470..222487,
222503..222505,222512..222514,222518..222532,
222575..222580,222635..222640,222782..222784,
222797..222799))
/gene="kat"
/locus_tag="NMB0216"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:163712"
misc_feature complement(order(221927..221929,221939..221941,
222518..222520,222542..222544,222557..222559,
222659..222661,222776..222778))
/gene="kat"
/locus_tag="NMB0216"
/note="heme binding pocket [chemical binding]; other site"
/db_xref="CDD:163712"
misc_feature complement(order(221660..221665,221672..221674,
222086..222097,222290..222292,222296..222298,
222362..222364,222392..222394,222398..222400,
222407..222409,222419..222421,222548..222550))
/gene="kat"
/locus_tag="NMB0216"
/note="NADPH binding site [chemical binding]; other site"
/db_xref="CDD:163712"
gene 223300..224151
/locus_tag="NMB0217"
/db_xref="GeneID:902329"
CDS 223300..224151
/locus_tag="NMB0217"
/note="identified by similarity to EGAD:7711; match to
protein family HMM PF00309; match to protein family HMM
PF04552; match to protein family HMM PF04963"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma-54 factor RpoN"
/protein_id="NP_273274.1"
/db_xref="GI:15676143"
/db_xref="GeneID:902329"
/translation="MTLLGIKLKQTQQLNQRLQQSLRVLQMSGIELEREVENWLSDNP
LLERKDTDEFSDAEFSHYTAPARQIGGDEGEDMLSNIAGEQDFKQYLHAQVCEHPLSD
QEAACVHILIDFLDEQGYLTDSIEDILDHTPLEWMLDEAMLQHALTALKKFDPAGVAA
ADLNESLILQIERLGECAAKPAALHIVRNALDSIDGNRSQTLARIKKHLPQTDSGTLE
AALDLIASLNPFPAAGFASSTPTPYSDEALANLLAFRGMEVSRRTIAKYRESFEIPAA
HKRKTAE"
misc_feature 223300..>224028
/locus_tag="NMB0217"
/note="DNA-directed RNA polymerase specialized sigma
subunit, sigma54 homolog [Transcription]; Region: RpoN;
COG1508"
/db_xref="CDD:224425"
misc_feature 223510..224028
/locus_tag="NMB0217"
/note="Sigma-54 factor, core binding domain; Region:
Sigma54_CBD; pfam04963"
/db_xref="CDD:218353"
misc_feature <224023..224142
/locus_tag="NMB0217"
/note="Sigma-54, DNA binding domain; Region: Sigma54_DBD;
pfam04552"
/db_xref="CDD:218144"
gene complement(225071..226201)
/gene="pglA"
/locus_tag="NMB0218"
/db_xref="GeneID:902330"
CDS complement(225071..226201)
/gene="pglA"
/locus_tag="NMB0218"
/note="identified by similarity to GP:3599932; match to
protein family HMM PF00534"
/codon_start=1
/transl_table=11
/product="glycosyltransferase"
/protein_id="NP_273275.1"
/db_xref="GI:15676144"
/db_xref="GeneID:902330"
/translation="MKIVFITTVASSIYGFRAPVIKKLIGKNHQVYAFVSEFSDNELD
IIREMGVTPVTYRSNRSGLNPFSDIKSTFLIFKELKKISPDLVFPYFAKPVIFGTFAA
KLAGVPRIVGMLEGLGFAFTPQPEGIPLKTKIIKGILIALYRIALPMLESLIVLNPDD
KDELTDKYGIKIKNIHILGGIGLDLRQYPYSEADIPDEKEPVKFLFIGRFLKEKGIDD
FIRAAEQVKDKYPDTVFTALGAIDKSRGGGGDLERLAARDIIRFPGFVNNVSEVIKEH
HIFVLPSYYREGVPRSTQEAMAVGRAVITTDVPGCRETVADKVNGFLIEPWNPRILAE
KMIYFIENREAVRLMGNASYAIAKDKFDAEKVDLKLLDILKA"
misc_feature complement(225074..226201)
/gene="pglA"
/locus_tag="NMB0218"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
misc_feature complement(225086..226198)
/gene="pglA"
/locus_tag="NMB0218"
/note="This family is most closely related to the GT1
family of glycosyltransferases. cap1E in Streptococcus
pneumoniae is required for the synthesis of type 1
capsular polysaccharides; Region: GT1_cap1E_like; cd03808"
/db_xref="CDD:99980"
misc_feature complement(order(225326..225328,225395..225397,
225575..225583,226118..226120))
/gene="pglA"
/locus_tag="NMB0218"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99980"
gene complement(226506..227753)
/gene="fabF-1"
/locus_tag="NMB0219"
/db_xref="GeneID:902331"
CDS complement(226506..227753)
/gene="fabF-1"
/locus_tag="NMB0219"
/EC_number="2.3.1.41"
/note="FabF; beta-ketoacyl-ACP synthase II, KASII;
catalyzes a condensation reaction in fatty acid
biosynthesis: addition of an acyl acceptor of two carbons
from malonyl-ACP; required for the elongation of
short-chain unsaturated acyl-ACP"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP synthase"
/protein_id="NP_273276.1"
/db_xref="GI:15676145"
/db_xref="GeneID:902331"
/translation="MSQRRVVITGLGQVSPVGNTVAEAWDTLLTGKSGIGAITRFDTS
DINSRVAGEVRGFDIGQYISAKEARRMDVFIHYGIAAALQAIADSGLDDVENLDKDRI
GVNIGSGIGGLPGIEVTGKAVIEGGARKINPFFIPGSLINLISGHVTILKGYRGPSYG
MVSACTTGAHAIGDSLRMIKYGDADIMVAGGAEGAISTLGVGGFAAMKALSTRNDDPA
TASRPWDKGRDGFVIGEGAGILVLEELEHAKKRGAKIYAEIVGFGMSSDAYHITAPNE
EGPALAVTRALKDAGINPEDVDYVNAHGTSTPLGDANETKALKRAFGEHAYKTVVSST
KSMTGHLLGAAGGVEAVYSILAIHDGKIPPTINIFEQDVEAGCDLDYCANEARDAEID
VAISNSFGFGGTNGTLVFKRFKG"
misc_feature complement(226521..227744)
/gene="fabF-1"
/locus_tag="NMB0219"
/note="beta-ketoacyl-acyl-carrier-protein synthase II;
Region: fabF; TIGR03150"
/db_xref="CDD:200247"
misc_feature complement(226524..227744)
/gene="fabF-1"
/locus_tag="NMB0219"
/note="Beta-ketoacyl-acyl carrier protein (ACP) synthase
(KAS), type I and II. KASs are responsible for the
elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen...; Region:
KAS_I_II; cd00834"
/db_xref="CDD:238430"
misc_feature complement(order(226542..226544,226548..226550,
226911..226913,226947..226961,227133..227138,
227145..227150,227211..227213,227220..227225,
227232..227234,227268..227276,227280..227282,
227286..227288,227304..227306,227316..227318,
227328..227330,227346..227348,227382..227387,
227391..227393,227403..227408,227427..227429))
/gene="fabF-1"
/locus_tag="NMB0219"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238430"
misc_feature complement(order(226734..226736,226845..226847,
227259..227261))
/gene="fabF-1"
/locus_tag="NMB0219"
/note="active site"
/db_xref="CDD:238430"
gene complement(227909..228145)
/gene="acpP"
/locus_tag="NMB0220"
/db_xref="GeneID:902332"
CDS complement(227909..228145)
/gene="acpP"
/locus_tag="NMB0220"
/note="carries the fatty acid chain in fatty acid
biosynthesis"
/codon_start=1
/transl_table=11
/product="acyl carrier protein"
/protein_id="NP_273277.1"
/db_xref="GI:15676146"
/db_xref="GeneID:902332"
/translation="MSNIEQQVKKIVAEQLGVNEADVKNESSFQDDLGADSLDTVELV
MALEEAFGCEIPDEDAEKITTVQLAIDYINAHNG"
misc_feature complement(227912..228145)
/gene="acpP"
/locus_tag="NMB0220"
/note="acyl carrier protein; Provisional; Region: acpP;
PRK00982"
/db_xref="CDD:179197"
gene 228377..229384
/gene="pyrD"
/locus_tag="NMB0221"
/db_xref="GeneID:902333"
CDS 228377..229384
/gene="pyrD"
/locus_tag="NMB0221"
/EC_number="1.3.3.1"
/note="catalyzes the conversion of dihydroorotate to
orotate in the pyrimidine biosynthesis pathway; uses a
flavin nucleotide as an essential cofactor; class 2
enzymes are monomeric and compared to the class 1 class 2
possess an extended N terminus, which plays a role in the
membrane association of the enzyme and provides the
binding site for the respiratory quinones that serve as
physiological electron acceptors"
/codon_start=1
/transl_table=11
/product="dihydroorotate dehydrogenase 2"
/protein_id="NP_273278.1"
/db_xref="GI:15676147"
/db_xref="GeneID:902333"
/translation="MYPLARRILFALDAEKAHHFTLDALYTVYKLGLIPVTDNRTKPV
KLMGMDLPNPVGLAAGLDKNGEYIDALGALGFGFIEIGTVTPNPQPGNPQPRLFRVPE
HQGIINRMGFNNHGIDTMIRNIEKSKFSGVLGINIGKNAVTPIENAADDYLICLEKAY
AHASYITVNISSPNTKNLRALQGGDELSALLEALKNKQAQLASVHGKYVPLAVKIAPD
LDEAQIEDIAHVVKSVEMDGIIATNTTIDKSSLGSHPLAGEQGGLSGLPVHEKSNRVL
KLLADHIDGKLPIIGVGGIMEGEDSADKIRLGATAVQVYSGLIYKGPALVKECLKALA
R"
misc_feature 228377..229381
/gene="pyrD"
/locus_tag="NMB0221"
/note="dihydroorotate dehydrogenase 2; Reviewed; Region:
PRK05286"
/db_xref="CDD:235388"
misc_feature 228392..229375
/gene="pyrD"
/locus_tag="NMB0221"
/note="Dihydroorotate dehydrogenase (DHOD) class 2. DHOD
catalyzes the oxidation of (S)-dihydroorotate to orotate.
This is the fourth step and the only redox reaction in the
de novo biosynthesis of UMP, the precursor of all
pyrimidine nucleotides. DHOD requires...; Region:
DHOD_2_like; cd04738"
/db_xref="CDD:240089"
misc_feature order(228428..228430,228671..228673)
/gene="pyrD"
/locus_tag="NMB0221"
/note="quinone interaction residues [chemical binding];
other site"
/db_xref="CDD:240089"
misc_feature order(228551..228553,228563..228565,228623..228625,
228698..228700,228704..228712,228881..228883,
228890..228892,228896..228898,229016..229018,
229100..229108,229169..229171,229256..229258,
229319..229324)
/gene="pyrD"
/locus_tag="NMB0221"
/note="active site"
/db_xref="CDD:240089"
misc_feature order(228563..228565,228890..228892,229016..229018)
/gene="pyrD"
/locus_tag="NMB0221"
/note="catalytic residues [active]"
/db_xref="CDD:240089"
misc_feature order(228623..228625,228698..228700,228881..228883,
229016..229018,229100..229105,229169..229171,
229256..229258,229319..229324)
/gene="pyrD"
/locus_tag="NMB0221"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:240089"
misc_feature order(228698..228700,228881..228883,228887..228889,
229103..229108)
/gene="pyrD"
/locus_tag="NMB0221"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:240089"
gene 229547..230020
/locus_tag="NMB0222"
/db_xref="GeneID:902334"
CDS 229547..230020
/locus_tag="NMB0222"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273279.1"
/db_xref="GI:15676148"
/db_xref="GeneID:902334"
/translation="MNLDLTAQKVRLSWKDILWGYGNKYLGWADVAAYARKMTLSDHD
ERVFKLSLINKSNILELKPVLEDLASEMRDYSPKNWLYVLLSDVFHRKEEFEDPLGEV
EKIYADFDYPEEIESFVRYMPPKDGYIPSAHTYEENIARLYSHWEHYLNNGGGQG"
misc_feature 229547..230017
/locus_tag="NMB0222"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4304"
/db_xref="CDD:226754"
gene 230147..230365
/locus_tag="NMB0223"
/db_xref="GeneID:902335"
CDS 230147..230365
/locus_tag="NMB0223"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273280.1"
/db_xref="GI:15676149"
/db_xref="GeneID:902335"
/translation="MIMGFWNGVAKAAKAVGEGMIEAGNEHKALKMEYAEKSSEELHE
IVKSDGFFKNSTREKSAAYAILKERGEV"
gene 230563..233253
/gene="glnE"
/locus_tag="NMB0224"
/db_xref="GeneID:902336"
CDS 230563..233253
/gene="glnE"
/locus_tag="NMB0224"
/EC_number="2.7.7.42"
/note="catalyzes the ATP-dependent addition of AMP to a
subunit of glutamine synthetase; also catalyzes the
reverse reaction - deadenylation;
adenylation/deadenylation of glutamine synthetase subunits
is important for the regulation of this enzyme"
/codon_start=1
/transl_table=11
/product="bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase"
/protein_id="NP_273281.1"
/db_xref="GI:15676150"
/db_xref="GeneID:902336"
/translation="MSDNRLDTARRHSLFLARQLDNGKLKPEIFLPMLDKVLTEADFQ
AFADWGEIRAEENEEELARQLRELRRYVVSQIIVRDINRISDLNEVTRTITLFADFAV
NTALDFAYAYYRDMYGTPIGRYTKSPQHLSVVAMGKAGGYELNVSSDIDLIFVYPESG
DTDGRRERGNQEFFTKVGQKLIALLNDITADGQVFRVDMRLRPDGDSGALVLSETALE
QYLITQGREWERYAWCKGRVVTPYPNDIKALVRPFVFRKYLDYGAYEAMRKLHRQISS
EVSKKGMADNIKLGAGGIREVEFIAQIFQMIRGGQMRALQLKGTQETLKKLAELGIML
SEHVETLLAAYRFLRDVEHRLQYWDDQQTQTLPTSPEQRQLLAESMGFDSYSAFSDGL
NVHRNKVNQLFNEILSEPEEQTQDNSEWQWAWQDKPDEEGRRCRLKAHGFDAETVAAR
LDQIRHGHKYRHLSAHAQPRFDAVVPLFVQAAAAQSNPTDTLMRLLDFLENISRRSAY
LAFLNEHPQTLAQLAQIMGQSSWVAAYLNKYPILLDELISAQLLDTAFDWQALAAALS
DDLKACGGDTEAQMDTLRRFQHAQVFRLAVQDLAGLWTVESLSDQLSALADTILAAAL
LCAWADMPKKHRDTPQFAVVGYGKLGGKELGYASDLDLVYLYDDPHPDAGDVYSRLAR
RLTNWLSAATGAGSLYETDLRLRPNGDAGFLAHSIAAFEKYQRENAWTWEHQSLTRAR
FICGTSEIQTAFDRIRTEILTAERDQTALAGEIIEMREKMFPTHPPADSNVKYARGGV
VDVEFIVQYLILAHARQYPQLLDNYGNIALLNISADCGLIDKTLAGQSRTAYRFYRRQ
QHNTKLRDAAKTEVTGELLAHYGNVRKLWREVFGEEAATV"
misc_feature 230569..233232
/gene="glnE"
/locus_tag="NMB0224"
/note="bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Reviewed; Region:
PRK11072"
/db_xref="CDD:236836"
misc_feature 230779..231315
/gene="glnE"
/locus_tag="NMB0224"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature order(231007..231009,231013..231015,231154..231156)
/gene="glnE"
/locus_tag="NMB0224"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
misc_feature 231364..231783
/gene="glnE"
/locus_tag="NMB0224"
/note="GlnD PII-uridylyltransferase; Region:
GlnD_UR_UTase; pfam08335"
/db_xref="CDD:219800"
misc_feature 232315..232839
/gene="glnE"
/locus_tag="NMB0224"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature order(232537..232539,232543..232545,232663..232665)
/gene="glnE"
/locus_tag="NMB0224"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
gene complement(233555..234520)
/locus_tag="NMB0225"
/db_xref="GeneID:902337"
CDS complement(233555..234520)
/locus_tag="NMB0225"
/note="identified by similarity to EGAD:9780; match to
protein family HMM PF00665; match to protein family HMM
TIGR01199"
/codon_start=1
/transl_table=11
/product="IS30 family transposase"
/protein_id="NP_273282.1"
/db_xref="GI:15676151"
/db_xref="GeneID:902337"
/translation="MSYTQLTQGERYHIQYLSRHCTVTEIAKQLNRHKSTISREIRRH
RTQGQQYSAEKAQRQSQTIKQRKRQPYKLDSQLIQHIDTLIRRKLSPEQVCAYLCKHH
QITLHHSTIYRYLRQDKSNGSTLWQHLRICSKPYRKRYGSTWTRGKVPNRVGIENRPA
IVDQKSRIGDWEADTIVGKGQKSALLTLVERVTRYTIICKLDSLKAEDTARAAVRALK
AHKDRVHTITMDNGKEFYQHTKITKALKAETYFCRPYHSWEKGLNENTNGLIRQYFPK
QTDFRNISDREIRRVQDELNHRPRKTLGYETPSVLFLNLFQPLIH"
misc_feature complement(233561..234520)
/locus_tag="NMB0225"
/note="Transposase and inactivated derivatives, IS30
family [DNA replication, recombination, and repair];
Region: Tra8; COG2826"
/db_xref="CDD:225382"
misc_feature complement(234389..234517)
/locus_tag="NMB0225"
/note="Helix-turn-helix domain; Region: HTH_38; pfam13936"
/db_xref="CDD:206107"
misc_feature complement(234176..234415)
/locus_tag="NMB0225"
/note="Homeodomain-like domain; Region: HTH_32; pfam13565"
/db_xref="CDD:222226"
misc_feature complement(233699..234016)
/locus_tag="NMB0225"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
gene complement(234785..235477)
/locus_tag="NMB0226"
/db_xref="GeneID:902338"
CDS complement(234785..235477)
/locus_tag="NMB0226"
/note="identified by similarity to EGAD:106326; match to
protein family HMM PF01863"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273283.1"
/db_xref="GI:15676152"
/db_xref="GeneID:902338"
/translation="MKRFTYTLSDGLCIEIELKRSAKKNLILRPVNMQTVSINVPPFF
QDHALANWLAANETILRNTLAKTPVHPVSHPNLPEWIWYRGIKTKLDTHSQSHIRITS
SEILLPRKETAAQIDHLRRLLNERAREYLLPRLEKHAAETGLTPTATDLSNAKTFWGV
CRPHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWHLVNTLTPHTDNAKSW
LKAHGRELFVLG"
misc_feature complement(234791..235471)
/locus_tag="NMB0226"
/note="Predicted metal-dependent hydrolase [General
function prediction only]; Region: COG1451"
/db_xref="CDD:224368"
gene complement(235585..236778)
/locus_tag="NMB0227"
/db_xref="GeneID:902339"
CDS complement(235585..236778)
/locus_tag="NMB0227"
/note="identified by similarity to EGAD:28718"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273284.1"
/db_xref="GI:15676153"
/db_xref="GeneID:902339"
/translation="MSDQKNRRNALIGAAFLMATSAIGPGFLTQTATFTQALAASFGF
VILLSILLDIGAQLNIWRIVAVSEKQAQDIANQVLPGAGYFLAVLIVMGGLAFNIGNV
GGAGLGLNLLTGLSPETGAVISGVIAIGVFLFKEAGKVMDKFAQVMGFVMIALTVYVA
WQANPPLADAAVHTFMPEKLDAMAIVTLVGGTVGGYITFAGAHRLLDAGIKGKSALPE
VSQSSVRAILIASIMRIVLFLAVLGVVSQGVQLNPDNPASTPFEYAAGYIGLLIFGVV
IWAASITSVIGAAYTSVSFFSGLSPSIERNKNKWIIAFIAVSTAVFSTIGKPAQVLVF
VGALNGLILPISLGLILIAAYKTKIVGDYKHPLWLTVSGVIVVGLMAVLSAITISKYI
GGLFG"
misc_feature complement(235591..236778)
/locus_tag="NMB0227"
/note="Mn2+ and Fe2+ transporters of the NRAMP family
[Inorganic ion transport and metabolism]; Region: MntH;
COG1914"
/db_xref="CDD:224826"
gene complement(236907..237644)
/locus_tag="NMB0228"
/db_xref="GeneID:902340"
CDS complement(236907..237644)
/locus_tag="NMB0228"
/note="identified by similarity to EGAD:28719; match to
protein family HMM PF03746"
/codon_start=1
/transl_table=11
/product="LamB/YcsF family protein"
/protein_id="NP_273285.1"
/db_xref="GI:15676154"
/db_xref="GeneID:902340"
/translation="MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAA
LAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMA
YVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGQVKAVDGSLVAVQADSICL
HGDGPHAVVFAEKIRQELLAAGIKVSA"
misc_feature complement(236916..237635)
/locus_tag="NMB0228"
/note="Escherichia coli putative lactam utilization
protein YbgL and similar proteins; Region:
LamB_YcsF_YbgL_like; cd10800"
/db_xref="CDD:212111"
misc_feature complement(order(236988..236990,237120..237122,
237129..237131,237153..237155,237162..237164,
237309..237311,237321..237326,237330..237332,
237438..237440,237471..237473,237618..237620))
/locus_tag="NMB0228"
/note="putative active site [active]"
/db_xref="CDD:212111"
gene complement(237631..238559)
/locus_tag="NMB0229"
/note="conserved hypothetical protein, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to EGAD:28720"
/pseudo
/db_xref="GeneID:903206"
gene complement(238556..239203)
/locus_tag="NMB0230"
/db_xref="GeneID:902341"
CDS complement(238556..239203)
/locus_tag="NMB0230"
/note="identified by similarity to EGAD:28721; match to
protein family HMM PF02682; match to protein family HMM
TIGR00370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273287.1"
/db_xref="GI:15676155"
/db_xref="GeneID:902341"
/translation="MRIEITPISESALVYRLNAPSELGKQQKLWAFAAALGQHDRIEE
VVVGMNNLTVFTRFDTDLATLADELQYVWEHTAVTDHQGKLVEIPVCYGGEYGPDLAE
VAAFHQTVISEIVRRHTAQTYTVFMMGFQPGFPYLGGLPEALHTPRRAVPRTSVPAGS
VGIGGSQTGVYPFASPGGWQIIGRTELPLFRADLNPPTLLAAGDQVRFVAERIEP"
misc_feature complement(238604..239194)
/locus_tag="NMB0230"
/note="Allophanate hydrolase subunit 1; Region: AHS1;
pfam02682"
/db_xref="CDD:217182"
misc_feature complement(238562..239191)
/locus_tag="NMB0230"
/note="Allophanate hydrolase subunit 1 [Amino acid
transport and metabolism]; Region: DUR1; COG2049"
/db_xref="CDD:224960"
gene complement(239259..239363)
/locus_tag="NMB0231"
/db_xref="GeneID:902342"
CDS complement(239259..239363)
/locus_tag="NMB0231"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273288.1"
/db_xref="GI:15676156"
/db_xref="GeneID:902342"
/translation="MRYFNRNGLRSSEKVQRQGSTFPIDGLMMQHRRY"
gene 239387..241594
/gene="uvrD"
/locus_tag="NMB0232"
/db_xref="GeneID:902343"
CDS 239387..241594
/gene="uvrD"
/locus_tag="NMB0232"
/EC_number="3.6.1.-"
/note="identified by similarity to EGAD:14237; match to
protein family HMM PF00580; match to protein family HMM
TIGR01075"
/codon_start=1
/transl_table=11
/product="DNA helicase II"
/protein_id="NP_273289.1"
/db_xref="GI:15676157"
/db_xref="GeneID:902343"
/translation="MFPDQSAPNLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLT
TRIAWLLQSGQASVHSIMAVTFTNKAAKEMQTRLGAMIPINVRAMWLGTFHGLCHRFL
RLHHRDAGLPSSFQILDGGDQLSLIKRLLKSLNIAEEIIAPRSLQGFINAQKESGLRA
SVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEMLQNNEILRQHYQNRFN
HILVDEFQDTNKLQYAWLKLIAGNHAAVFAVGDDDQSIYRFRGASVGNMTALMEEFHI
DAPVKLEQNYRSVGNILAAANAVIENNDERLGKNLRTDAEAGDKIRYYSAFTDLEEAR
FILDETKALEREGWDLDEIAVLYRSNAQSRVIEQSLFRSGIPYKIYGGLRFYERQEIK
HALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAK
AAKVVAFVRLIEALRNQVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELV
NAAIEFKPEDSNFEILPENISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHA
AKGLEFNAVFLTGMEEGRFPSEMSLAERGGLEEERRLMYVAITRARKRLYITMAQQRM
LHGQTQFGIVSRFVEEIPPEVLHYLSVKKPAYDSYGNTRQTAASKDKIIDDYKQPQTY
AGFRIGQNVRHAKFGTGVIIDAADKGESARLTINFGKQGVKELDTKFAKLEEM"
misc_feature 239414..241585
/gene="uvrD"
/locus_tag="NMB0232"
/note="DNA helicase II; Region: uvrD; TIGR01075"
/db_xref="CDD:130147"
misc_feature 239459..239680
/gene="uvrD"
/locus_tag="NMB0232"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:222005"
misc_feature <241070..241240
/gene="uvrD"
/locus_tag="NMB0232"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:222209"
gene 241670..241771
/locus_tag="NMB0233"
/db_xref="GeneID:902344"
CDS 241670..241771
/locus_tag="NMB0233"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273290.1"
/db_xref="GI:15676158"
/db_xref="GeneID:902344"
/translation="MGFFYESSPKFQTAFLAVIIVDEAHATMYTQSK"
gene 242118..242657
/locus_tag="NMB0234"
/db_xref="GeneID:902345"
CDS 242118..242657
/locus_tag="NMB0234"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273291.1"
/db_xref="GI:15676159"
/db_xref="GeneID:902345"
/translation="MSQVFKDFDLSSVWKTNSWADENYKEAPFTPEILAAVESELGYK
LPQSFIELMAVQNGGIFVKNCFPTTQRNSWAENHVQICEVSGIGFEKEGSLCGAMGQK
LWLEEWEYPPIGVYFANDPSGGHAMFALDYRACGKDGEPKVVFVEQESDFEIVELAPD
FETFIRSLRHEDEFIDEEI"
misc_feature 242199..242612
/locus_tag="NMB0234"
/note="SMI1 / KNR4 family; Region: SMI1_KNR4; smart00860"
/db_xref="CDD:214864"
gene complement(242898..243059)
/locus_tag="NMB0235"
/db_xref="GeneID:902346"
CDS complement(242898..243059)
/locus_tag="NMB0235"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273292.1"
/db_xref="GI:15676160"
/db_xref="GeneID:902346"
/translation="MNIINYKGDDIIISLTREELQLLRSLVIEIYAGVCIDAEEFEIV
SGIRNPKLV"
gene complement(243067..243270)
/locus_tag="NMB0236"
/db_xref="GeneID:902347"
CDS complement(243067..243270)
/locus_tag="NMB0236"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273293.1"
/db_xref="GI:15676161"
/db_xref="GeneID:902347"
/translation="MLKRNLGFDTFKLITIFFLGIRRLQSKHIRAIWDDKSGAIVIRD
PNSKDGGTAFRPTLGKTYFDKQK"
gene complement(243183..243542)
/locus_tag="NMB0237"
/db_xref="GeneID:902348"
CDS complement(243183..243542)
/locus_tag="NMB0237"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273294.1"
/db_xref="GI:15676162"
/db_xref="GeneID:902348"
/translation="MIKLDLKSINLYDIDFEKFTPEIPDNFHRWIDLDIGIEGEQGSS
IFSLCICSPKWISHHCNKEGFFWSNALILEQFDHKIIKSEIDKILEYCSKETWDLTLS
NLLRFFSWEFEDYNPNT"
gene 243595..243859
/locus_tag="NMB0238"
/note="IS1016 family transposase, degenerate; this region
contains one or more premature stops and/or frameshifts
which are not the result of sequencing error; identified
by similarity to EGAD:28335"
/pseudo
/db_xref="GeneID:902349"
gene 244058..244678
/locus_tag="NMB0239"
/db_xref="GeneID:902350"
CDS 244058..244678
/locus_tag="NMB0239"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273295.1"
/db_xref="GI:15676163"
/db_xref="GeneID:902350"
/translation="MNSTASKTLKGLSLVFFASGFCALIYQVSWQRLLFSHIGIDLSS
ITVIISVFMVGLGVGAYFGGRIADRFPSSIIPLFCIAEVSIGLFGLVSRGLISGLGHL
LVEADLPIIAAANFLLLLLPTFMMGATLPLLTCFFNRKIHNVGESIGTLYFFNTLGAA
LGSLAAAEFFYVFFTLSQTIALTACFNLLIAASVWLRYRKDGYSEH"
misc_feature 244106..>244660
/locus_tag="NMB0239"
/note="spermidine synthase; Provisional; Region: PRK03612"
/db_xref="CDD:235139"
gene 244701..246152
/locus_tag="NMB0240"
/db_xref="GeneID:902351"
CDS 244701..246152
/locus_tag="NMB0240"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273296.1"
/db_xref="GI:15676164"
/db_xref="GeneID:902351"
/translation="MLSFLSGLLSLGIEVLWVRMFSFAAQSVPQAFSFTLACFLTGIA
VGAYFGKRICRSRFVDIPFIGQCFLWAGIADFLILGAAWLLTGFSGFVHHAGIFITLS
AVVRGLIFPLVHHVGTDGNKSGRQVSNVYFANVAGSALGPVLIGFVILDFLSTQQIYL
LICLISAAVPLFCTLFQKSLRLNAVSVAVSLMFGILMFLLPDSVFQNIADRPDRLIEN
KHGIVAVYHRDGDKVVYGANVYDGAYNTDVFNSVNGIERAYLLPSLKSGIRRIFVVGL
STGSWARVLSAIPEMQSMIVAEINPAYRSLIADEPQIAPLLQDKRVEIVLDDGRKWLR
RHPDEKFDLILMNTTWYWRAYSTNLLSAEFLKQVQSHLTPDGIVMFNTTHSPHAFATA
VHSIPYAYRYGHMVVGSATPVVFPNKELLKQRLSRLIWPESGRHVFDSSTVDAAAQKV
VSRMLIQMTEPSAGAEVITDDNMIVEYKYGRGI"
misc_feature <244767..245294
/locus_tag="NMB0240"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 245508..245840
/locus_tag="NMB0240"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(245520..245540,245592..245597,245679..245687,
245739..245741)
/locus_tag="NMB0240"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 246614..246970
/gene="nuoA"
/locus_tag="NMB0241"
/db_xref="GeneID:902352"
CDS 246614..246970
/gene="nuoA"
/locus_tag="NMB0241"
/EC_number="1.6.5.3"
/note="identified by similarity to GP:3025801; match to
protein family HMM PF00507"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase I subunit A"
/protein_id="NP_273297.1"
/db_xref="GI:15676165"
/db_xref="GeneID:902352"
/translation="MLSAYFPVFVFILIGLAAGVLFILLGTILGPKRHYAEKDAPYEC
GFEAFENARMKFDVRYYLVAILFILFDLEVAFMLPWAVVFKDLGAYGFWSMLVFIVVL
TVGFVYEWKKGALEWE"
misc_feature 246614..246967
/gene="nuoA"
/locus_tag="NMB0241"
/note="NADH:ubiquinone oxidoreductase subunit A;
Validated; Region: PRK06602"
/db_xref="CDD:180638"
gene 246961..247443
/gene="nuoB"
/locus_tag="NMB0242"
/db_xref="GeneID:902353"
CDS 246961..247443
/gene="nuoB"
/locus_tag="NMB0242"
/EC_number="1.6.5.3"
/note="The point of entry for the majority of electrons
that traverse the respiratory chain eventually resulting
in the reduction of oxygen"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit B"
/protein_id="NP_273298.1"
/db_xref="GI:15676166"
/db_xref="GeneID:902353"
/translation="MGIEGVLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMH
AGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSC
ANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTIARDE
"
misc_feature 246961..247422
/gene="nuoB"
/locus_tag="NMB0242"
/note="NADH dehydrogenase subunit B; Validated; Region:
PRK06411"
/db_xref="CDD:235797"
gene 247456..248049
/gene="nuoC"
/locus_tag="NMB0243"
/db_xref="GeneID:902354"
CDS 247456..248049
/gene="nuoC"
/locus_tag="NMB0243"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit C"
/protein_id="NP_273299.1"
/db_xref="GI:15676167"
/db_xref="GeneID:902354"
/translation="MASIQDLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTA
LRDHEELHFELLVDLCGVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDD
FPVVESVVDIYNSADWYEREAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGY
VEMRYDEEQKRVIYQPVTIEPREITPRIVREENYGGQ"
misc_feature 247456..248046
/gene="nuoC"
/locus_tag="NMB0243"
/note="NADH dehydrogenase subunit C; Provisional; Region:
PRK06074"
/db_xref="CDD:235691"
misc_feature 247540..247932
/gene="nuoC"
/locus_tag="NMB0243"
/note="NADH (or F420H2) dehydrogenase, subunit C; Region:
NuoC_fam; TIGR01961"
/db_xref="CDD:233657"
gene 248039..249295
/gene="nuoD"
/locus_tag="NMB0244"
/db_xref="GeneID:902355"
CDS 248039..249295
/gene="nuoD"
/locus_tag="NMB0244"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit D"
/protein_id="NP_273300.1"
/db_xref="GI:15676168"
/db_xref="GeneID:902355"
/translation="MANKLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLL
HRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMF
AEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV
YRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETLLTDN
RIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVN
GDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI
HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDE
MAKGHMLADVVAIIGTQDIVFGEVDR"
misc_feature 248048..249292
/gene="nuoD"
/locus_tag="NMB0244"
/note="NADH dehydrogenase subunit D; Validated; Region:
PRK06075"
/db_xref="CDD:180385"
misc_feature 248054..249292
/gene="nuoD"
/locus_tag="NMB0244"
/note="NADH dehydrogenase I, D subunit; Region: NuoD;
TIGR01962"
/db_xref="CDD:233658"
gene 249295..249768
/gene="nuoE"
/locus_tag="NMB0245"
/db_xref="GeneID:902356"
CDS 249295..249768
/gene="nuoE"
/locus_tag="NMB0245"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit E"
/protein_id="NP_273301.1"
/db_xref="GI:15676169"
/db_xref="GeneID:902356"
/translation="MLSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPET
IAFVADYIGITPAQAYEVATFYNMYDLEPVGKYKLTVCTNLPCALRGGMATGEYLKQK
LGIGYGETTPDGKFTLVEGECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAELE"
misc_feature 249295..249729
/gene="nuoE"
/locus_tag="NMB0245"
/note="NADH dehydrogenase subunit E; Validated; Region:
PRK07539"
/db_xref="CDD:181024"
misc_feature 249520..>249708
/gene="nuoE"
/locus_tag="NMB0245"
/note="TRX-like [2Fe-2S] Ferredoxin (Fd) family,
NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily;
Nuo, also called respiratory chain Complex 1, is the entry
point for electrons into the respiratory chains of
bacteria and the mitochondria of eukaryotes; Region:
TRX_Fd_NuoE; cd03064"
/db_xref="CDD:239362"
misc_feature order(249526..249528,249532..249534,249652..249660)
/gene="nuoE"
/locus_tag="NMB0245"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:239362"
misc_feature order(249538..249540,249553..249555,249661..249663,
249673..249675)
/gene="nuoE"
/locus_tag="NMB0245"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:239362"
gene 250158..251459
/gene="nuoF"
/locus_tag="NMB0246"
/db_xref="GeneID:902357"
CDS 250158..251459
/gene="nuoF"
/locus_tag="NMB0246"
/EC_number="1.6.5.3"
/note="identified by similarity to EGAD:102346; match to
protein family HMM PF01512; match to protein family HMM
TIGR01959"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase I subunit F"
/protein_id="NP_273302.1"
/db_xref="GI:15676170"
/db_xref="GeneID:902357"
/translation="MAIYQSGVIFDQVDTANPDCWTLDEYVKRGGYTALRKILSENIS
QTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGEKYVVCNTDEGEPGTFKDRDII
MFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNILGS
DFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTET
FSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVLKMAGG
MRGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVK
ALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMEDLDLLDSVGNQMAGRT
ICALADAAVFPVRSFTKHFRDEFVHYIEHGGPMKEHKWGGW"
misc_feature 250179..251414
/gene="nuoF"
/locus_tag="NMB0246"
/note="NADH-quinone oxidoreductase, F subunit; Region:
nuoF_fam; TIGR01959"
/db_xref="CDD:131014"
misc_feature 250893..251045
/gene="nuoF"
/locus_tag="NMB0246"
/note="SLBB domain; Region: SLBB; pfam10531"
/db_xref="CDD:220798"
misc_feature 251154..251291
/gene="nuoF"
/locus_tag="NMB0246"
/note="NADH-ubiquinone oxidoreductase-F iron-sulfur
binding region; Region: NADH_4Fe-4S; smart00928"
/db_xref="CDD:197996"
gene 251459..251896
/locus_tag="NMB0247"
/db_xref="GeneID:902358"
CDS 251459..251896
/locus_tag="NMB0247"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273303.1"
/db_xref="GI:15676171"
/db_xref="GeneID:902358"
/translation="MVEAKIFILYGAANKGKSTTLNTLFNQICRKFSKFLVFFERHGN
GLDFVAVFDHEGQRIGFYSSGDNEYEVRGNLYKLYSHNCDFIFGTSRTRGGSCDAVGC
YAELLHGDVNIINWCEKFEPTDEDNERAVKELFKSFKNIINEL"
gene 252182..252421
/locus_tag="NMB0248"
/db_xref="GeneID:902359"
CDS 252182..252421
/locus_tag="NMB0248"
/note="identified by similarity to GP:2570056; match to
protein family HMM PF01541"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273304.1"
/db_xref="GI:15676172"
/db_xref="GeneID:902359"
/translation="MANGKNGTLYIGVTMNLPERVWQHKNHVNIDGFTARYDVHDLVW
YQFFENMPEAVAKEKTMKKWRREWKIKLIEEQNTE"
misc_feature 252182..252412
/locus_tag="NMB0248"
/note="GIY-YIG domain of uncharacterized hypothetical
protein found in bacteria; Region: GIY-YIG_unchar_3;
cd10448"
/db_xref="CDD:198395"
misc_feature order(252209..252211,252215..252217,252239..252241,
252251..252253,252353..252355,252410..252412)
/locus_tag="NMB0248"
/note="putative active site [active]"
/db_xref="CDD:198395"
misc_feature 252209..252217
/locus_tag="NMB0248"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198395"
misc_feature 252353..252355
/locus_tag="NMB0248"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:198395"
gene 252733..254994
/gene="nuoG"
/locus_tag="NMB0249"
/db_xref="GeneID:902360"
CDS 252733..254994
/gene="nuoG"
/locus_tag="NMB0249"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
ubiquinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit G"
/protein_id="NP_273305.1"
/db_xref="GI:15676173"
/db_xref="GeneID:902360"
/translation="MLQIEIDGKQVSVEQGATVIEAAHKLGTYIPHFCYHKKLSIAAN
CRMCLVNVEKAPKPLPACATPVTDGMIVRTHSAKAREAQEGVMEFLLINHPLDCPTCD
QGGECQLQDLAVGYGKTTSRYTEEKRSVVGKDMGSLVSAEEMSRCIHCTRCVRFTEEI
AGLQEIAMVNRGEHSEIMPFIGKTVETELSGNVIDLCPVGALTSKPFRFNARTWELNR
RKSVSAHDALGSNLIVQTKDHTVRRVLPLENEAINECWLSDRDRFAYEGLYHESRLKN
PKIKQGGEWMDVDWKTALEYVRSAIECIAKDGKQNQVGVWANPMNTVEELYLAKKLAD
GLGVKNFATRLRQQDKRLSDGLKGAQWLGQSIESLADNDAVLVVGANLRKEQPLLTAR
LRRAAKDRMALSVLASSKEELFMPLLSQEAAHPDEWAGRLKNLSVNAEHAVTASLKNA
EKAAVILGAEVQNHPDYAAVYAAAQELADATGAVLGILPQAANSVGADVLNVNSGKSV
VEMVNAPKQAVLLLNVEPEIDTADGAKAVAALKQAKSVMAFTPFVSETLLDVCDVLLP
IAPFTETSGSFINMEGRLQSFHGVVQGFGDSRPLWKVLRVLGNLFDLKGFEYHDTAAI
LKDALDVESLPSKLDNRNAWTGEGVQTTSDRLVRVGGVGIYHTDSIVRRSAPLQETSH
AAVPAARVNPNTLARLGLQDGQTAVAKQNGASVSVAVKADAGLPENVVHLPLHTENAA
LGALMDTIELAGA"
misc_feature 252733..254991
/gene="nuoG"
/locus_tag="NMB0249"
/note="NADH dehydrogenase subunit G; Validated; Region:
PRK09129"
/db_xref="CDD:236386"
misc_feature 252736..252951
/gene="nuoG"
/locus_tag="NMB0249"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:238126"
misc_feature order(252820..252825,252832..252834,252841..252843,
252865..252876,252913..252918)
/gene="nuoG"
/locus_tag="NMB0249"
/note="catalytic loop [active]"
/db_xref="CDD:238126"
misc_feature order(252832..252834,252865..252867,252874..252876,
252916..252918)
/gene="nuoG"
/locus_tag="NMB0249"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:238126"
misc_feature 252979..253101
/gene="nuoG"
/locus_tag="NMB0249"
/note="NADH-ubiquinone oxidoreductase-G iron-sulfur
binding region; Region: NADH-G_4Fe-4S_3; pfam10588"
/db_xref="CDD:204520"
misc_feature 253390..254565
/gene="nuoG"
/locus_tag="NMB0249"
/note="MopB_NDH-1_NuoG2: The second domain of the NuoG
subunit of the NADH-quinone oxidoreductase/NADH
dehydrogenase-1 (NDH-1), found in beta- and
gammaproteobacteria. The NDH-1 is the first
energy-transducting complex in the respiratory chain and
functions as...; Region: MopB_NDH-1_NuoG2; cd02772"
/db_xref="CDD:239173"
misc_feature 254725..>254952
/gene="nuoG"
/locus_tag="NMB0249"
/note="Molybdopterin-Binding, C-terminal (MopB_CT) domain
of the MopB superfamily of proteins, a large, diverse,
heterogeneous superfamily of enzymes that, in general,
bind molybdopterin as a cofactor. The MopB domain is found
in a wide variety of molybdenum-...; Region: MopB_CT;
cl09929"
/db_xref="CDD:245204"
gene 254997..256073
/gene="nuoH"
/locus_tag="NMB0250"
/db_xref="GeneID:902361"
CDS 254997..256073
/gene="nuoH"
/locus_tag="NMB0250"
/EC_number="1.6.5.3"
/note="identified by similarity to EGAD:96512; match to
protein family HMM PF00146"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase I subunit H"
/protein_id="NP_273306.1"
/db_xref="GI:15676174"
/db_xref="GeneID:902361"
/translation="MQEWFQNLFAATLGLGDLGITVGLVVSVIVKIVIILIPLILTVA
YLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPKLSNKALFYIGPI
MSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGA
MRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGGSVFSWNWLPLFPIF
IVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEYIFMILIAALTSL
MFLGGWLSPFPQSWGIVGTPSAFWMFAKMAAVLYWYLWIRATFPRYRYDQIMRLGWKV
LIPIGFAYIVILGVWMISPLNLWK"
misc_feature 255126..256043
/gene="nuoH"
/locus_tag="NMB0250"
/note="NADH:ubiquinone oxidoreductase subunit H;
Provisional; Region: PRK06076"
/db_xref="CDD:235692"
gene 256154..256633
/gene="nuoI"
/locus_tag="NMB0251"
/db_xref="GeneID:902362"
CDS 256154..256633
/gene="nuoI"
/locus_tag="NMB0251"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit I"
/protein_id="NP_273307.1"
/db_xref="GI:15676175"
/db_xref="GeneID:902362"
/translation="MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRF
RGLHAQRRYPNGEERCIACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFC
GFCEEACPTDAIVETHIFEYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR"
misc_feature 256154..256630
/gene="nuoI"
/locus_tag="NMB0251"
/note="NADH dehydrogenase subunit I; Provisional; Region:
PRK05888"
/db_xref="CDD:235637"
misc_feature 256322..256378
/gene="nuoI"
/locus_tag="NMB0251"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:243197"
misc_feature 256427..256495
/gene="nuoI"
/locus_tag="NMB0251"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:215671"
gene 256664..257371
/locus_tag="NMB0252"
/db_xref="GeneID:902363"
CDS 256664..257371
/locus_tag="NMB0252"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273308.1"
/db_xref="GI:15676176"
/db_xref="GeneID:902363"
/translation="MEGLINALKYLAEHEPIDNFEEIRTRNSPIELPSGLSNFEQNIF
LKENLSPKLQNDDSLKTHYWIIREWGGIKSFKQSAENSQLIRQFLSELNSGKLSSGLL
KISSLSKLASFIDCERFAIYDSRAIFSLNWLLFKFTNADLFFQPQGRNRELEIRNMNV
LFHFSDIKPNYRKPDVSFHQYCGLLQDLAKQVYGKQAKPYHIEMLLFKIATTWICADM
DQLIKFDCLRNQDFQTA"
gene 257407..258078
/gene="nuoJ"
/locus_tag="NMB0253"
/db_xref="GeneID:902364"
CDS 257407..258078
/gene="nuoJ"
/locus_tag="NMB0253"
/EC_number="1.6.5.3"
/note="identified by similarity to EGAD:42978; match to
protein family HMM PF00499"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase I subunit J"
/protein_id="NP_273309.1"
/db_xref="GI:15676177"
/db_xref="GeneID:902364"
/translation="MTFQLILFYIFAVIILYGALKTVTAKNPVHAALHLVLTFCVSAM
LWMLMQAEFLGVTLVVVYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLL
AVALILILVNPKTDLAAFGLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMV
AAIALVHRKTVNPKRMDPADQVKVRADQGRMRLVKMEAVKPQVESAEESEVSDDLKPK
EEGKA"
misc_feature 257407..258006
/gene="nuoJ"
/locus_tag="NMB0253"
/note="NADH:ubiquinone oxidoreductase subunit J;
Provisional; Region: PRK06638"
/db_xref="CDD:235844"
misc_feature 257407..>257565
/gene="nuoJ"
/locus_tag="NMB0253"
/note="NADH dehydrogenase subunit J; Provisional; Region:
PRK06433"
/db_xref="CDD:180562"
gene 258075..258380
/gene="nuoK"
/locus_tag="NMB0254"
/db_xref="GeneID:902365"
CDS 258075..258380
/gene="nuoK"
/locus_tag="NMB0254"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit K"
/protein_id="NP_273310.1"
/db_xref="GI:15676178"
/db_xref="GeneID:902365"
/translation="MITLTHYLVLGALLFGISAMGIFMNRKNVLVLLMSIELMLLAVN
FNFIAFSQHLGDTAGQIFVFFVLTVAAAESAIGLAIMVLVYRNRQTINVADLDELKG"
misc_feature 258075..258377
/gene="nuoK"
/locus_tag="NMB0254"
/note="NADH:ubiquinone oxidoreductase subunit K;
Validated; Region: PRK05715"
/db_xref="CDD:180218"
gene 258414..258989
/locus_tag="NMB0255"
/db_xref="GeneID:902366"
CDS 258414..258989
/locus_tag="NMB0255"
/note="identified by similarity to EGAD:27990; match to
protein family HMM PF02661"
/codon_start=1
/transl_table=11
/product="cell filamentation protein Fic-like protein"
/protein_id="NP_273311.1"
/db_xref="GI:15676179"
/db_xref="GeneID:902366"
/translation="MPSENPIGKTMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQ
IHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVE
MNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFL
LKDNLTDDVDNREIIFKGIEQSYYYEGYEKG"
misc_feature 258414..258977
/locus_tag="NMB0255"
/note="Protein involved in cell division [Cell division
and chromosome partitioning]; Region: Fic; COG2184"
/db_xref="CDD:225095"
misc_feature 258525..258773
/locus_tag="NMB0255"
/note="Fic/DOC family; Region: Fic; pfam02661"
/db_xref="CDD:217170"
gene 259113..259454
/locus_tag="NMB0256"
/db_xref="GeneID:902367"
CDS 259113..259454
/locus_tag="NMB0256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273312.1"
/db_xref="GI:15676180"
/db_xref="GeneID:902367"
/translation="MMDKNQLEQEFHKAMLNIYQEALNLPQPYKATRFLQIVNEFGGK
EAADKLLSTGEKKTQTGFTELILSGGGVHALKYSMEYLVLQKPWCDLFTEEQLAVARK
RLERVGFVFPK"
gene 259503..261527
/gene="nuoL"
/locus_tag="NMB0257"
/db_xref="GeneID:902368"
CDS 259503..261527
/gene="nuoL"
/locus_tag="NMB0257"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
ubiquinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit L"
/protein_id="NP_273313.1"
/db_xref="GI:15676181"
/db_xref="GeneID:902368"
/translation="MNDMTLYLIIALVPLAGSLIAGLFGNKIGRAGAHTVTILGVAVS
AVLSAYVLWGFIDGSRAKFDENVYTWLTMGGLDFSVGFLVDTMTAMMMVVVTGVSLMV
HIYTIGYMHDEKVGYQRFFSYISLFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGF
YFKRPSATFANLKAFLINRVGDFGFLLGIGLVLAYFGGSLRYQDVFAYLPNVQNATIQ
LFPGVEWSLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGL
FMVSRMSPIYEMSSTALSVIMVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTV
ALGASAYSVAMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPVTWLTM
LIGNLSLIGTPFFSGFYSKDSIIEAAKYSTLPGSGFAYFAVLASVFVTAFYAFRQYFM
VFHGEEKWRSLPEHHSDGHGEEHHGLGKNDNPHESPLVVTLPLILLAVPSVIIGYIAI
EPMLYGDFFKDVIFVNADAHPTIHIMKEEFHGALAMVSHSLHSPVLYLAIAGVLSAWL
LYVKLPHLPAKIAQTFRPIYVLFENKYYLDALYFNVFAKGTRALGTFFWKVGDTAIID
NGIVNGSAKLVGAIAAQVRKAQTGFIYTYAAAMVFGVLVLLGMTFWGLFR"
misc_feature 259512..261515
/gene="nuoL"
/locus_tag="NMB0257"
/note="NADH:ubiquinone oxidoreductase subunit L; Reviewed;
Region: PRK06590"
/db_xref="CDD:235836"
misc_feature 259698..259880
/gene="nuoL"
/locus_tag="NMB0257"
/note="NADH-Ubiquinone oxidoreductase (complex I), chain 5
N-terminus; Region: Oxidored_q1_N; pfam00662"
/db_xref="CDD:109709"
misc_feature 259911..260756
/gene="nuoL"
/locus_tag="NMB0257"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 261623..263119
/gene="nuoM"
/locus_tag="NMB0258"
/db_xref="GeneID:902369"
CDS 261623..263119
/gene="nuoM"
/locus_tag="NMB0258"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit M"
/protein_id="NP_273314.1"
/db_xref="GI:15676182"
/db_xref="GeneID:902369"
/translation="MFSNYLLSLAIWIPIAAGVLVLATGSDSRAPFARVLAFMGALAG
FLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVL
AGWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPR
RVYASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIEQIPLGVQQLLFVAFFL
SFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFA
PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKG
AIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGL
PATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEM
QDINCREFAILAILAVAVLGMGLYPNAFIEVVHQAANDLIAHVAQSKI"
misc_feature 261626..263113
/gene="nuoM"
/locus_tag="NMB0258"
/note="NADH:ubiquinone oxidoreductase subunit M; Reviewed;
Region: PRK05846"
/db_xref="CDD:235622"
misc_feature 262016..262846
/gene="nuoM"
/locus_tag="NMB0258"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 263129..264571
/gene="nuoN"
/locus_tag="NMB0259"
/db_xref="GeneID:902370"
CDS 263129..264571
/gene="nuoN"
/locus_tag="NMB0259"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit N"
/protein_id="NP_273315.1"
/db_xref="GI:15676183"
/db_xref="GeneID:902370"
/translation="MNWSDLNLMPAMPEIVLLSLLVLLLLADLWVSDDKRPWTHYGAL
ATVAVTAVVQLAVWEQGSTSSFNGMYIADGMSRLAKMVLYALTFALFVYAKPYNQVRG
IFKGEFYTLSLFALLGMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAAL
KYFVLGALASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVA
FKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKIAAVVFTFRILVTGLGTVHHDWSLMF
ALLAAASLLVGNLAAIMQTNIKRMFAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYA
LMAAAGFGVLMVLSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYA
KFGVIMALLKQGHVWLSVFAVIMSLIGAFYYLRVVKVIYFDVPDHDQPVGSNYAAKFV
LTVNAFLLLLWGIMPQTVIDWCAKALENTL"
misc_feature 263129..264556
/gene="nuoN"
/locus_tag="NMB0259"
/note="NADH:ubiquinone oxidoreductase subunit N;
Provisional; Region: PRK05777"
/db_xref="CDD:235603"
misc_feature 263576..264328
/gene="nuoN"
/locus_tag="NMB0259"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 264619..265005
/locus_tag="NMB0260"
/db_xref="GeneID:902371"
CDS 264619..265005
/locus_tag="NMB0260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273316.1"
/db_xref="GI:15676184"
/db_xref="GeneID:902371"
/translation="MPFRNAVQTASPPTTPKQKAHHDRIHVHPFGLGTHLCQRPLPHD
QTVRRGRTQAQTFRTPHDRAGGRFRADRRSCLHPRIPCRIGTRSGLGVLCHSRLPVPD
FCVSMFCVAVFLAHAQQGIDKHRNAV"
gene complement(265091..265870)
/gene="ispA"
/locus_tag="NMB0261"
/db_xref="GeneID:902372"
CDS complement(265091..265870)
/gene="ispA"
/locus_tag="NMB0261"
/EC_number="2.5.1.10"
/note="identified by similarity to EGAD:28427; match to
protein family HMM PF00348"
/codon_start=1
/transl_table=11
/product="geranyltranstransferase"
/protein_id="NP_273317.1"
/db_xref="GI:15676185"
/db_xref="GeneID:902372"
/translation="MRYAALDGGKRLRPMLVLAASELGEAVHEAVEQAMAAIEMIHVY
SLVHDDMPAMDNDSLRRGKPTCHIKYGEATALLTGDALQTQAFDVLSRPTELPAARQL
AMLSVLAKAGGSRGMAGGQAIDLANVGKQMVQADLEQMHSLKTGALIRAAVLLGATAC
PDLSDAELSVLDAYAAKLGLAFQVIDDVLDCEADTATLGKTAGKDADNDKPTYVKLMG
LEAARSYAHKLVAEAVALLEPFGDKALRLRQLAEFAVARKY"
misc_feature complement(265094..265870)
/gene="ispA"
/locus_tag="NMB0261"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:223220"
misc_feature complement(265100..265870)
/gene="ispA"
/locus_tag="NMB0261"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(265241..265243,265256..265258,
265271..265273,265301..265303,265310..265315,
265427..265429,265436..265441,265499..265501,
265508..265510,265688..265693,265706..265711,
265721..265729,265733..265741,265748..265750))
/gene="ispA"
/locus_tag="NMB0261"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(order(265706..265711,265718..265741))
/gene="ispA"
/locus_tag="NMB0261"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(265241..265243,265256..265258,
265271..265273,265301..265303,265310..265315,
265439..265441,265499..265501,265688..265693,
265706..265708,265721..265726))
/gene="ispA"
/locus_tag="NMB0261"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(265310..265315,265439..265441,
265688..265693,265706..265708,265721..265726))
/gene="ispA"
/locus_tag="NMB0261"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(265439..265441,265499..265501,
265688..265693,265706..265708,265721..265726))
/gene="ispA"
/locus_tag="NMB0261"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(265235..265249,265256..265273,
265289..265294,265658..265702))
/gene="ispA"
/locus_tag="NMB0261"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(265241..265243,265256..265258,
265271..265273,265301..265303,265310..265315))
/gene="ispA"
/locus_tag="NMB0261"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(265971..266195)
/gene="xseB"
/locus_tag="NMB0262"
/db_xref="GeneID:902373"
CDS complement(265971..266195)
/gene="xseB"
/locus_tag="NMB0262"
/EC_number="3.1.11.6"
/note="catalyzes the bidirectional exonucleolytic cleavage
of DNA"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease VII small subunit"
/protein_id="NP_273318.1"
/db_xref="GI:15676186"
/db_xref="GeneID:902373"
/translation="MKKNAPKSFEEALSRLESLTQSMQGEMPLEDALAAYQEGNELVR
YCQTKLAQVEQKLQVLDTDGLKELNLESDE"
misc_feature complement(265974..266195)
/gene="xseB"
/locus_tag="NMB0262"
/note="exodeoxyribonuclease VII small subunit;
Provisional; Region: PRK00977"
/db_xref="CDD:179195"
gene complement(266442..267365)
/locus_tag="NMB0263"
/db_xref="GeneID:902374"
CDS complement(266442..267365)
/locus_tag="NMB0263"
/note="EngC; RsgA; CpgA; circularly permuted GTPase;
ribosome small subunit-dependent GTPase A; has the pattern
G4-G1-G3 as opposed to other GTPases; interacts strongly
with 30S ribosome which stimulates GTPase activity"
/codon_start=1
/transl_table=11
/product="ribosome-associated GTPase"
/protein_id="NP_273319.1"
/db_xref="GI:15676187"
/db_xref="GeneID:902374"
/translation="MPSEHPFSDGIPTPNPKETMNDTAQITASYGRRYIVRTPDGTTY
EASTRKKRVDFACGDRVRISPVNAEQVVIEDFLPRQSLLYRQDAWKTKLIAANVTQLL
IVTAAVPSPSVRLLQRALLAAEAAGIEAVIVLNKADLPETALWREKLKFYETLGYPVI
ETRALENAGSLRPALQGHSNILLGQSGMGKSTLTNALLGSQTARTGDISAALDSGKHT
TTHARLYDLNGETQLIDSPGLQEFGLHHLQAADLPRYFPDFRHLVGQCRFHNCTHRAE
PGCAFKAAAQTGAASPERLAFLQGITDELPG"
misc_feature complement(266451..267299)
/locus_tag="NMB0263"
/note="GTPase RsgA; Reviewed; Region: PRK00098"
/db_xref="CDD:234631"
misc_feature complement(267111..267299)
/locus_tag="NMB0263"
/note="S1_YloQ_GTPase: YloQ GTase family (also known as
YjeQ and CpgA), S1-like RNA-binding domain. Proteins in
the YloQ GTase family bind the ribosome and have GTPase
activity. The precise role of this family is unknown. The
protein structure is composed of...; Region:
S1_YloQ_GTPase; cd04466"
/db_xref="CDD:239912"
misc_feature complement(order(267225..267227,267231..267233,
267261..267263,267285..267287))
/locus_tag="NMB0263"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239912"
misc_feature complement(order(267201..267206,267222..267227,
267270..267272))
/locus_tag="NMB0263"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239912"
misc_feature complement(266463..267080)
/locus_tag="NMB0263"
/note="Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases; Region:
YjeQ_EngC; cd01854"
/db_xref="CDD:206747"
misc_feature complement(order(266463..266465,266475..266477,
266484..266486,266595..266597,266601..266603,
266613..266615,266895..266897,266991..266996,
267003..267008,267012..267017,267024..267029))
/locus_tag="NMB0263"
/note="GTPase/Zn-binding domain interface [polypeptide
binding]; other site"
/db_xref="CDD:206747"
misc_feature complement(order(266790..266807,266874..266879,
266949..266954,266958..266963))
/locus_tag="NMB0263"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206747"
misc_feature complement(266952..266963)
/locus_tag="NMB0263"
/note="G4 box; other site"
/db_xref="CDD:206747"
misc_feature complement(266871..266879)
/locus_tag="NMB0263"
/note="G5 box; other site"
/db_xref="CDD:206747"
misc_feature complement(266793..266816)
/locus_tag="NMB0263"
/note="G1 box; other site"
/db_xref="CDD:206747"
misc_feature complement(266697..266720)
/locus_tag="NMB0263"
/note="Switch I region; other site"
/db_xref="CDD:206747"
misc_feature complement(266709..266711)
/locus_tag="NMB0263"
/note="G2 box; other site"
/db_xref="CDD:206747"
misc_feature complement(266652..266663)
/locus_tag="NMB0263"
/note="G3 box; other site"
/db_xref="CDD:206747"
misc_feature complement(266649..266657)
/locus_tag="NMB0263"
/note="Switch II region; other site"
/db_xref="CDD:206747"
gene complement(267370..269226)
/locus_tag="NMB0264"
/db_xref="GeneID:902375"
CDS complement(267370..269226)
/locus_tag="NMB0264"
/note="identified by similarity to EGAD:28073; match to
protein family HMM PF00005; match to protein family HMM
PF00664"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_273320.1"
/db_xref="GI:15676188"
/db_xref="GeneID:902375"
/translation="MLNKIFSWFESRIDPYPEAAPKTPEKGLWRFVWSSMAGVRKWIA
ALAALTAGIGIMEALVFQFMGKIVEWLGKYAPAELFAEKSWELAAMAAMMVFSVAWAF
AASNVRLQTLQGVFPMRLRWNFHRLMLNQSLGFYQDEFAGRVSAKVMQTALALRDAVM
TVADMVVYVSVYFITSGVILASLDSWLLLPFIGWIVGFASVMRLLIPKLGQTAAWQAD
ARSLMTGRITDAYSNIATVKLFSHGAREAAYAKQSMEEFMVTVRAQMRLATLLHSCSF
IVNTSLTLSTAALGIWLWHNGQVGVGAVATATAMALRVNGLSQYIMWESARLFENIGT
VGDGMATLSKPHTILDKPRALPLNVPQGAIKFEHVDFSYEAGKPLLNGFNLTIRPGEK
VGLIGRSGAGKSTIVNLLLRFYEPQSGTVSIDGQDISGVTQESLRAQIGLVTQDTSLL
HRSVRDNIIYGRPDATDAEMVSAAERAEAAGFIPDLSDAKGRRGYDAHVGERGVKLSG
GQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQESLDKMMDGKTVIAIAHRLST
IAAMDRLVVLDKGRIIEEGTHAELLEKRGLYAKLWAHQSGGFLNEHVEWQHD"
misc_feature complement(267406..269061)
/locus_tag="NMB0264"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:224055"
misc_feature complement(268348..>268875)
/locus_tag="NMB0264"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature complement(267424..268137)
/locus_tag="NMB0264"
/note="ATP-binding cassette domain of the bacterial lipid
flippase and related proteins, subfamily C; Region:
ABCC_MsbA; cd03251"
/db_xref="CDD:213218"
misc_feature complement(268015..268038)
/locus_tag="NMB0264"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213218"
misc_feature complement(order(267541..267543,267634..267639,
267892..267894,268012..268020,268024..268029))
/locus_tag="NMB0264"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213218"
misc_feature complement(267892..267903)
/locus_tag="NMB0264"
/note="Q-loop/lid; other site"
/db_xref="CDD:213218"
misc_feature complement(267682..267711)
/locus_tag="NMB0264"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213218"
misc_feature complement(267634..267651)
/locus_tag="NMB0264"
/note="Walker B; other site"
/db_xref="CDD:213218"
misc_feature complement(267616..267627)
/locus_tag="NMB0264"
/note="D-loop; other site"
/db_xref="CDD:213218"
misc_feature complement(267535..267555)
/locus_tag="NMB0264"
/note="H-loop/switch region; other site"
/db_xref="CDD:213218"
gene complement(269389..269973)
/gene="ruvA"
/locus_tag="NMB0265"
/db_xref="GeneID:902376"
CDS complement(269389..269973)
/gene="ruvA"
/locus_tag="NMB0265"
/note="plays an essential role in ATP-dependent branch
migration of the Holliday junction"
/codon_start=1
/transl_table=11
/product="Holliday junction DNA helicase RuvA"
/protein_id="NP_273321.1"
/db_xref="GI:15676189"
/db_xref="GeneID:902376"
/translation="MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGES
VQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAV
AEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAAAPAADETEDIVSTLLA
LGYSEREAKAAVKGVPEGTDVGEGVRLALKNLLK"
misc_feature complement(269395..269973)
/gene="ruvA"
/locus_tag="NMB0265"
/note="Holliday junction DNA helicase RuvA; Reviewed;
Region: ruvA; PRK00116"
/db_xref="CDD:234645"
misc_feature complement(269788..269973)
/gene="ruvA"
/locus_tag="NMB0265"
/note="RuvA N terminal domain; Region: RuvA_N; pfam01330"
/db_xref="CDD:216437"
misc_feature complement(269404..269529)
/gene="ruvA"
/locus_tag="NMB0265"
/note="RuvA, C-terminal domain; Region: RuvA_C; pfam07499"
/db_xref="CDD:219432"
gene complement(270055..270381)
/locus_tag="NMB0266"
/db_xref="GeneID:902377"
CDS complement(270055..270381)
/locus_tag="NMB0266"
/note="identified by similarity to EGAD:107494; match to
protein family HMM PF03413"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273322.1"
/db_xref="GI:15676190"
/db_xref="GeneID:902377"
/translation="MNIKHLLLTSAATALLSISAPALAHHDGHGDDDHGHAAHQHNKQ
DKIISRAQAEKAALARVGGKITDIDLEHDNGRPHYDVEIVKNGQEYKVVVDARTGRVI
SSRRDD"
misc_feature complement(270058..>270258)
/locus_tag="NMB0266"
/note="Predicted membrane protein [Function unknown];
Region: COG3212"
/db_xref="CDD:225753"
misc_feature complement(270070..270243)
/locus_tag="NMB0266"
/note="Peptidase propeptide and YPEB domain; Region:
PepSY; pfam03413"
/db_xref="CDD:217543"
gene complement(270443..271162)
/locus_tag="NMB0267"
/db_xref="GeneID:902378"
CDS complement(270443..271162)
/locus_tag="NMB0267"
/note="identified by similarity to EGAD:27846; match to
protein family HMM PF03330; match to protein family HMM
TIGR00413"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273323.1"
/db_xref="GI:15676191"
/db_xref="GeneID:902378"
/translation="MTLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKV
AGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGERYDMNAFTAAHKTLPIPSYVRV
TNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVNQGTAHVKIEQIVPGQSAPV
AENKDIFIDLKSFGTEHEAQAYLNQAAQNFAVSSSGTNLSVEKRRYEYVVKMGPFTSQ
ERAAEAEAQARGMVRAVLTAG"
misc_feature complement(270521..>271075)
/locus_tag="NMB0267"
/note="Lipoproteins [Cell envelope biogenesis, outer
membrane]; Region: RlpA; COG0797"
/db_xref="CDD:223868"
misc_feature complement(270716..270988)
/locus_tag="NMB0267"
/note="Rare lipoprotein A (RlpA)-like double-psi
beta-barrel; Region: DPBB_1; pfam03330"
/db_xref="CDD:217497"
gene complement(271292..271756)
/locus_tag="NMB0268"
/db_xref="GeneID:902379"
CDS complement(271292..271756)
/locus_tag="NMB0268"
/note="identified by similarity to EGAD:8165; match to
protein family HMM PF00588; match to protein family HMM
TIGR00185"
/codon_start=1
/transl_table=11
/product="RNA methyltransferase"
/protein_id="NP_273324.1"
/db_xref="GI:15676192"
/db_xref="GeneID:902379"
/translation="MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKM
KRAGLDYHEFASLTVHENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPE
TRGLPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGGV"
misc_feature complement(271295..271756)
/locus_tag="NMB0268"
/note="Predicted rRNA methylase (SpoU class) [Translation,
ribosomal structure and biogenesis]; Region: CspR;
COG0219"
/db_xref="CDD:223297"
gene complement(271821..272546)
/locus_tag="NMB0269"
/db_xref="GeneID:902380"
CDS complement(271821..272546)
/locus_tag="NMB0269"
/note="identified by similarity to EGAD:18112"
/codon_start=1
/transl_table=11
/product="competence protein"
/protein_id="NP_273325.1"
/db_xref="GI:15676193"
/db_xref="GeneID:902380"
/translation="MDFLSRWRRIADAPTIRRCVLCHGSSGVSDGICAGCRDDLAAYR
TDAANSCPLCFRHIQGGSVCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSM
VQPLADLMMQNPPDRLADECFDFVLPVPLSRERLLQRGFNQSESIVGLLAQRYGWQIL
PRHTVFRHHRPPQSTLKGGERRRNIKNAFEIRTPIPENCNILLIDDVFTTGATLDELA
KTLKKSGANRICCWTLARTPMKK"
misc_feature complement(271830..272528)
/locus_tag="NMB0269"
/note="Predicted amidophosphoribosyltransferases [General
function prediction only]; Region: ComFC; COG1040"
/db_xref="CDD:223970"
misc_feature complement(271833..272201)
/locus_tag="NMB0269"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(271836..271838,271908..271922,
271926..271934,272130..272132,272157..272159))
/locus_tag="NMB0269"
/note="active site"
/db_xref="CDD:206754"
gene 272545..273294
/locus_tag="NMB0270"
/db_xref="GeneID:902381"
CDS 272545..273294
/locus_tag="NMB0270"
/note="identified by similarity to EGAD:8656; match to
protein family HMM PF00561; match to protein family HMM
TIGR01738"
/codon_start=1
/transl_table=11
/product="bioH protein"
/protein_id="NP_273326.1"
/db_xref="GI:15676194"
/db_xref="GeneID:902381"
/translation="MPDAVKKVYLIHGWGANRHMFDDLMPRLPATWPVSAVDLPGHGD
APFVRPFDIAAAADGIAAQIDAPADILGWSLGGLVALYLAARHPDKVRSLCLTASFAR
LTADEDYPEGLAAPALGKMVGAFRSDYAKHIKQFLQLQLLHTPDADGIIGRILPDLAR
CGTPQALQEALDAAERADARHLLDKIDVPVLLVFGGKDAITPPRMGEYLHRRLKGSRL
VVMEKAAHAPFLSHAEAFAALYRDFVEGGLR"
misc_feature 272548..273276
/locus_tag="NMB0270"
/note="pimelyl-[acyl-carrier protein] methyl ester
esterase; Region: bioH; TIGR01738"
/db_xref="CDD:130799"
misc_feature <272755..>272862
/locus_tag="NMB0270"
/note="homoserine O-acetyltransferase; Provisional;
Region: metX; cl17114"
/db_xref="CDD:247710"
misc_feature <273088..>273222
/locus_tag="NMB0270"
/note="TAP-like protein; Region: Abhydrolase_4; pfam08386"
/db_xref="CDD:219815"
gene 273291..274079
/locus_tag="NMB0271"
/db_xref="GeneID:902382"
CDS 273291..274079
/locus_tag="NMB0271"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273327.1"
/db_xref="GI:15676195"
/db_xref="GeneID:902382"
/translation="MNHQDARWQVHRHLAEHTDQRLTLVRNAPKHILLAGADADISRS
LLAKRYPQAVFEEYDSRADFLAAAAAARKGGFWQRFTGKGVVQHCQSPIAPLPEACAD
MLWSNLGLLAAEQILPVLHNWARALKTDGLLFFTCFGRDTLAELKCRLKENGIESRSA
LFPDMHDLGDMLAENGFYDPVTDTAKLVLDYKKAETFWADMDTLGVWRAMAWNDENAA
RSCVGTIFEREGGLGITLETVYGHAVKKLMLPQGENVVQFFPKR"
misc_feature 273327..274025
/locus_tag="NMB0271"
/note="biotin biosynthesis protein BioC; Region: BioC;
TIGR02072"
/db_xref="CDD:233708"
gene 274534..274830
/locus_tag="NMB0272"
/db_xref="GeneID:902383"
CDS 274534..274830
/locus_tag="NMB0272"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273328.1"
/db_xref="GI:15676196"
/db_xref="GeneID:902383"
/translation="MNKKLNYIFMLDCLGLVILFTCIIATFERDYGFKIFTNSKRPEF
YYWIGMFYYGIISCWFDYQLISTKANSYKRKVKQYKIFSVIFSVLIFISTIVKL"
gene 274868..275293
/locus_tag="NMB0273"
/db_xref="GeneID:902384"
CDS 274868..275293
/locus_tag="NMB0273"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273329.1"
/db_xref="GI:15676197"
/db_xref="GeneID:902384"
/translation="MYWERGLHMYKASAVVPTGYVRVGNTAPLVGEDTQRYASFWGDG
YDVYRQLRWQQIPEKQRKAFKKAAKSKKTVMFAGREYGISKQNLSDVWDDFEDAMELK
AFPCLSSLFLTKWHKNLYDSGLTKTSTALPRLSSKRTIL"
gene complement(275435..277735)
/gene="recQ"
/locus_tag="NMB0274"
/db_xref="GeneID:902385"
CDS complement(275435..277735)
/gene="recQ"
/locus_tag="NMB0274"
/EC_number="3.6.1.-"
/note="identified by similarity to GP:148221; match to
protein family HMM PF00270; match to protein family HMM
PF00271; match to protein family HMM PF00570; match to
protein family HMM TIGR00614; match to protein family HMM
TIGR01389"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase"
/protein_id="NP_273330.1"
/db_xref="GI:15676198"
/db_xref="GeneID:902385"
/translation="MHRPTAKQILHEVFGYPEFRGRQEAVINTLAGGGSLTVLMPTGG
GKSLCYQIPALMREGVAVVVSPLIALMNDQVANLHAAGIEAAAVNSGTSADEAREIAD
RLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGM
LAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFVSSFDRPNIYYQVIEKNNGKK
QLLDFIRKEMTGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRF
THEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCY
GLNDWVLLRERIAEGNSDEVQKQIEMQKLDAMLAVCETAACRRVLLLKHFGEASEPCG
HCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNILRGKSDDWIRGNRHEQLS
TFGIGTELSDKEWRSVIRQCISLGYLTVNITRYQALQLTEAAKKVLKGETEVMLRPLK
RDKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMP
QDLNGLHDIYGLGEAKIDRFGHGILEVCRNAAGFSRDAVIRPQTEREQQLRQKLEAWR
YEQARAENCALHAVLSDESLADMLADTPETETDLEGVYGLGSVRAAKYGRDILAVCRP
FSDGIDETAKRKRRLMRALIQWCGETAKHEQSEPYRILSKAALRAIAAKQPEGLAELA
AVYGVGEEKAARYGAAVLAVLERNAV"
misc_feature complement(275945..277720)
/gene="recQ"
/locus_tag="NMB0274"
/note="ATP-dependent DNA helicase RecQ; Region: recQ;
TIGR01389"
/db_xref="CDD:130456"
misc_feature complement(277229..277624)
/gene="recQ"
/locus_tag="NMB0274"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature complement(277595..277609)
/gene="recQ"
/locus_tag="NMB0274"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature complement(277310..277321)
/gene="recQ"
/locus_tag="NMB0274"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature complement(276752..277123)
/gene="recQ"
/locus_tag="NMB0274"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature complement(order(276869..276877,276950..276955,
277013..277024))
/gene="recQ"
/locus_tag="NMB0274"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature complement(order(276767..276769,276776..276778,
276788..276790,276851..276853))
/gene="recQ"
/locus_tag="NMB0274"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
misc_feature complement(276248..276523)
/gene="recQ"
/locus_tag="NMB0274"
/note="This DNA-binding domain is found in the RecQ
helicase among others and has a helix-turn-helix
structure; Region: RQC; smart00956"
/db_xref="CDD:214936"
misc_feature complement(275954..276157)
/gene="recQ"
/locus_tag="NMB0274"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
misc_feature complement(275666..275908)
/gene="recQ"
/locus_tag="NMB0274"
/note="Helicase and RNase D C-terminal; Region: HRDC;
smart00341"
/db_xref="CDD:128635"
misc_feature complement(275441..275665)
/gene="recQ"
/locus_tag="NMB0274"
/note="Helicase and RNase D C-terminal; Region: HRDC;
smart00341"
/db_xref="CDD:128635"
gene complement(277800..278582)
/gene="trpC"
/locus_tag="NMB0275"
/db_xref="GeneID:902386"
CDS complement(277800..278582)
/gene="trpC"
/locus_tag="NMB0275"
/EC_number="4.1.1.48"
/note="involved in tryptophan biosynthesis; amino acid
biosynthesis; converts
1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to
C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide
and water"
/codon_start=1
/transl_table=11
/product="indole-3-glycerol phosphate synthase"
/protein_id="NP_273331.1"
/db_xref="GI:15676199"
/db_xref="GeneID:902386"
/translation="MTDILNKILATKAQEVAAQKAAVNAEHIRTLAAEAAPVRSFIDS
IRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQG
SPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVA
HELGMTVLLELHDETELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVV
TESGITGKADVEFMQSRGVHTFLIGETFMRADDIEAEVGKLF"
misc_feature complement(277806..278462)
/gene="trpC"
/locus_tag="NMB0275"
/note="Indole-3-glycerol phosphate synthase (IGPS); an
enzyme in the tryptophan biosynthetic pathway, catalyzing
the ring closure reaction of
1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate
(CdRP) to indole-3-glycerol phosphate (IGP), accompanied
by the...; Region: IGPS; cd00331"
/db_xref="CDD:238203"
misc_feature complement(order(277851..277856,277917..277922,
277998..278000,278004..278006,278010..278012,
278073..278075,278151..278153,278214..278216,
278220..278222,278283..278285,278385..278393,
278400..278402,278406..278408))
/gene="trpC"
/locus_tag="NMB0275"
/note="active site"
/db_xref="CDD:238203"
misc_feature complement(order(278010..278012,278073..278075,
278220..278222,278400..278402,278406..278408))
/gene="trpC"
/locus_tag="NMB0275"
/note="ribulose/triose binding site [chemical binding];
other site"
/db_xref="CDD:238203"
misc_feature complement(order(277851..277856,277917..277919,
278400..278402))
/gene="trpC"
/locus_tag="NMB0275"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:238203"
misc_feature complement(order(277998..278000,278004..278006,
278283..278285,278388..278390))
/gene="trpC"
/locus_tag="NMB0275"
/note="substrate (anthranilate) binding pocket [chemical
binding]; other site"
/db_xref="CDD:238203"
misc_feature complement(order(277998..278000,278151..278153,
278214..278216,278220..278222,278283..278285))
/gene="trpC"
/locus_tag="NMB0275"
/note="product (indole) binding pocket [chemical binding];
other site"
/db_xref="CDD:238203"
gene complement(278633..279589)
/locus_tag="NMB0276"
/db_xref="GeneID:902387"
CDS complement(278633..279589)
/locus_tag="NMB0276"
/note="identified by similarity to EGAD:101623"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273332.1"
/db_xref="GI:15676200"
/db_xref="GeneID:902387"
/translation="MILTPPDTPFFLRNGNADTIAAKFLQRPAPAYRRELLPDSTGKT
KVAYDFSDGISPDAPLVVLFHGLEGSSRSHYAVELMLAVRDRGWHGVVVHFRSCGGIA
NTAPVFYHLGDTAEIAFTLDTFAARYREIYAVGVSLGGNALAKYLGEQGKKALPQAAA
VISAPVDAEAAGRRFDSGITRLLYTRYFLRTLIPKAKSLQGFQTAFAAGCKTLGEFDD
RFTAPLHGFADRHDYYRQTSCKPLLKHVAKPLLLLNAVNDPFLPPEALPRADEVSEAV
TLFQPAYGGHVGFVSSTGGRLHLQWLPQTVLSYFDSFRTNRR"
misc_feature complement(278648..279589)
/locus_tag="NMB0276"
/note="Predicted hydrolase of the alpha/beta-hydrolase
fold [General function prediction only]; Region: COG0429"
/db_xref="CDD:223506"
gene complement(279721..281262)
/gene="mviN"
/locus_tag="NMB0277"
/db_xref="GeneID:902388"
CDS complement(279721..281262)
/gene="mviN"
/locus_tag="NMB0277"
/note="identified by similarity to EGAD:90808; match to
protein family HMM PF03023; match to protein family HMM
TIGR01695"
/codon_start=1
/transl_table=11
/product="virulence factor MviN"
/protein_id="NP_273333.1"
/db_xref="GI:15676201"
/db_xref="GeneID:902388"
/translation="MMNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGAGMATDAFFV
AFKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEAAEAFIRHVAGMLSFVLVIVTAL
GILAAPWVIYVSAPGFAQDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFGI
PAFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLP
KLSFKDAAVNRVMKQMAPAILGVSVAQVSLVINTIFASYLQSGSVSWMYYADRMMELP
SGVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLV
ATLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLAPGFYARQNIKTPVKIAIFTL
ICTQLMNLAFIGPLKHVGLSLAIGLGACINAGLLFYLLRRHGIYQPGKGWAAFLAKML
LSLAVMCGGLWAAQAYLPFEWAHAGGMRKAGQLCILIAVGGGLYFASLAALGFRPRHF
KRVEN"
misc_feature complement(279727..281262)
/gene="mviN"
/locus_tag="NMB0277"
/note="Uncharacterized membrane protein, putative
virulence factor [General function prediction only];
Region: MviN; COG0728"
/db_xref="CDD:223800"
misc_feature complement(279964..281229)
/gene="mviN"
/locus_tag="NMB0277"
/note="MurJ/MviN, a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins; Region:
MATE_MurJ_like; cd13123"
/db_xref="CDD:240528"
gene 281477..282175
/gene="dsbA-1"
/locus_tag="NMB0278"
/db_xref="GeneID:902389"
CDS 281477..282175
/gene="dsbA-1"
/locus_tag="NMB0278"
/note="identified by similarity to EGAD:98963; match to
protein family HMM PF01323"
/codon_start=1
/transl_table=11
/product="thiol:disulfide interchange protein DsbA"
/protein_id="NP_273334.1"
/db_xref="GI:15676202"
/db_xref="GeneID:902389"
/translation="MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGL
VEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEH
VVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTID
LLADKVREEQKAAQ"
misc_feature 281612..282154
/gene="dsbA-1"
/locus_tag="NMB0278"
/note="DsbA family, DsbA subfamily; DsbA is a monomeric
thiol disulfide oxidoreductase protein containing a redox
active CXXC motif imbedded in a TRX fold. It is involved
in the oxidative protein folding pathway in prokaryotes,
and is the strongest thiol...; Region: DsbA_DsbA; cd03019"
/db_xref="CDD:239317"
misc_feature order(281699..281701,281705..281710,282059..282061)
/gene="dsbA-1"
/locus_tag="NMB0278"
/note="catalytic residues [active]"
/db_xref="CDD:239317"
misc_feature 281789..281797
/gene="dsbA-1"
/locus_tag="NMB0278"
/note="hinge region; other site"
/db_xref="CDD:239317"
misc_feature order(281810..281812,281816..281839,281852..281911,
281921..281947,281966..281995)
/gene="dsbA-1"
/locus_tag="NMB0278"
/note="alpha helical domain; other site"
/db_xref="CDD:239317"
gene complement(282232..283236)
/locus_tag="NMB0279"
/db_xref="GeneID:902390"
CDS complement(282232..283236)
/locus_tag="NMB0279"
/note="identified by similarity to EGAD:137413"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273335.1"
/db_xref="GI:15676203"
/db_xref="GeneID:902390"
/translation="MQRQIKLKNWLQTVYPERDFDLTFAAADADFRRYFRATFSDGSS
VVCMDAPPDKMSVAPYLKVQKLFDMVNVPQVLHADTDLGFVVLNDLGNTTFLTAMLQE
QGETAHKALLLEAIGELVELQKASREGVLPEYDRETMLREINLFPEWFVAKELGRELT
FKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYD
LVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVA
GIFARLYYRDGKDKYRPEIPRFLNYLRRVSRRYAELAPLYALLVELVGDEELETGFTF
"
misc_feature complement(282286..283236)
/locus_tag="NMB0279"
/note="Predicted phosphotransferase related to Ser/Thr
protein kinases [General function prediction only];
Region: COG3178"
/db_xref="CDD:225719"
misc_feature complement(282493..>283029)
/locus_tag="NMB0279"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:216618"
gene 283438..285714
/locus_tag="NMB0280"
/db_xref="GeneID:902391"
CDS 283438..285714
/locus_tag="NMB0280"
/note="identified by similarity to EGAD:7471; match to
protein family HMM PF04453"
/codon_start=1
/transl_table=11
/product="organic solvent tolerance protein"
/protein_id="NP_273336.1"
/db_xref="GI:15676204"
/db_xref="GeneID:902391"
/translation="MSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVQGSGEASIPED
YTRIVADRMEGQSQVQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDG
TLIRGETLTYNLEQQTGEAHNVRMEIEQGGRRLQSVSRTAEMLGEGHYKLTETQFNTC
SAGDAGWYVKAASVEADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVP
SLSAGSDGVSLSVPYYFNLAPNLDATFAPSVIGERGAVFDGQVRYLRPDYAGQSDLTW
LPHDKKSGRNNRYQAKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGNKEIAGNVNLN
RRVWLDYGGRAAGGSLNAGLSVLKYQTLANQSGYKDKPYALMPRLSVEWRKNTGRAQI
GVSAQFTRFSHDSRQDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEA
RRVSRTLPIVNIDSGATFERNTRMFGGEVLQTLEPRLFYNYIPAKSQNDLPNFDSSES
SFGYGQLFRENLYYGNDRINTANSLSAAVQSRILDGATGEERFRAGIGQKFYFKDDAV
MLDGSVGKKPRNRSDWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGK
VLNARYKYGRNEKIYLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPI
EVLAGAEYKSSCGCWGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVA
VPGYITAHSLSAGRNKRP"
misc_feature 283438..285705
/locus_tag="NMB0280"
/note="Organic solvent tolerance protein OstA [Cell
envelope biogenesis, outer membrane]; Region: Imp;
COG1452"
/db_xref="CDD:224369"
misc_feature 284293..285432
/locus_tag="NMB0280"
/note="Organic solvent tolerance protein; Region: OstA_C;
pfam04453"
/db_xref="CDD:218093"
gene 285816..286862
/locus_tag="NMB0281"
/db_xref="GeneID:902392"
CDS 285816..286862
/locus_tag="NMB0281"
/EC_number="5.2.1.8"
/note="identified by similarity to EGAD:7686; match to
protein family HMM PF00639"
/codon_start=1
/transl_table=11
/product="peptidyl-prolyl cis-trans isomerase"
/protein_id="NP_273337.1"
/db_xref="GI:15676205"
/db_xref="GeneID:902392"
/translation="MMKIKALMIAAALLAAADVHAAPQKAKTASAKAAKAAKAAKVAK
VAKVAKVAATAQKEAAPAQQQGGIRFSDGIAAVADNEVITRRRLAEAVAEAKANLPKD
AQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRD
FADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKA
DSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFE
EAVHALKPGQVGAPVRTQFGWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVN
LLRDLHSGAYVDIR"
misc_feature 286029..>286295
/locus_tag="NMB0281"
/note="SurA N-terminal domain; Region: SurA_N; pfam09312"
/db_xref="CDD:150092"
misc_feature 286452..286727
/locus_tag="NMB0281"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
gene complement(288370..290250)
/locus_tag="NMB0282"
/db_xref="GeneID:902393"
CDS complement(288370..290250)
/locus_tag="NMB0282"
/note="identified by similarity to EGAD:28723; match to
protein family HMM PF00773"
/codon_start=1
/transl_table=11
/product="ribonuclease II-related protein"
/protein_id="NP_273338.1"
/db_xref="GI:15676206"
/db_xref="GeneID:902393"
/translation="MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFAE
FDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAEAIAEEYYGHAPTKTELAATLIA
LYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
ADLKTILHAPDKQSLTYKAFTKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFP
KGTGFPDLALPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPS
LAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAHRPAVSIYFDVDGE
FNVGAPTCKIEAVNIATNLRIQAIEPHFNAETGLDEAGEMMFAHHQDLIWFYQFATAL
QKARGKYEPDRAPQYDYSIELDEEGKVSVVRRERGSPIDTLVSEMMILANSTWAQMLH
DNDLPGLFRVQPTGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDD
TAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELTATILKE
DLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGN
AV"
misc_feature complement(288373..290211)
/locus_tag="NMB0282"
/note="Exoribonuclease R [Transcription]; Region: VacB;
COG0557"
/db_xref="CDD:223631"
misc_feature complement(288733..289539)
/locus_tag="NMB0282"
/note="RNB domain; Region: RNB; pfam00773"
/db_xref="CDD:216112"
gene 290559..291191
/locus_tag="NMB0283"
/db_xref="GeneID:902394"
CDS 290559..291191
/locus_tag="NMB0283"
/note="identified by similarity to EGAD:155656; match to
protein family HMM PF03641; match to protein family HMM
TIGR00730"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273339.1"
/db_xref="GI:15676207"
/db_xref="GeneID:902394"
/translation="MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHA
DYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPY
QDIALRFSRFAERKAVFFRYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPIVLVG
KAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSEHGLQTA"
misc_feature 290601..291158
/locus_tag="NMB0283"
/note="Predicted Rossmann fold nucleotide-binding protein
[General function prediction only]; Region: COG1611"
/db_xref="CDD:224527"
gene 291263..292633
/gene="purB"
/locus_tag="NMB0284"
/db_xref="GeneID:902395"
CDS 291263..292633
/gene="purB"
/locus_tag="NMB0284"
/EC_number="4.3.2.2"
/note="Catalyzes two discrete reactions in the de novo
synthesis of purines: the cleavage of adenylosuccinate and
succinylaminoimidazole carboxamide ribotide"
/codon_start=1
/transl_table=11
/product="adenylosuccinate lyase"
/protein_id="NP_273340.1"
/db_xref="GI:15676208"
/db_xref="GeneID:902395"
/translation="MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLK
ALAAEPKIAEVPPFSAETLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKKR
FAEVPEVAAVSEFIHFACTSEDINNLSHALMLQEAREAVLLPKLAEIIEKLTAMAHDL
AAVPMMSRTHGQPATPTTLGKETANVVYRLQRQFKNLQAQEFLGKINGAVGNYNAHMV
AYPDVDWETHCRNFVEISLGLTFNPYTIQIEPHDYMAEFFQTLSRINTILIDFNRDVW
GYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLSEKLPISRWQ
RDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTV
MRRYGVANPYEKLKDLTRGKGGITPEVLKGFIGLLEIPAEAKAKLLELTPALYVGKAE
ALAKRI"
misc_feature 291266..292630
/gene="purB"
/locus_tag="NMB0284"
/note="adenylosuccinate lyase; Provisional; Region:
PRK09285"
/db_xref="CDD:236452"
misc_feature 291326..292603
/gene="purB"
/locus_tag="NMB0284"
/note="PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL); Region: PurB; cd01598"
/db_xref="CDD:176470"
misc_feature order(291341..291346,291533..291535,291560..291562,
291605..291610,291614..291619,291764..291781,
291785..291787,291803..291808,291815..291817,
291824..291829,291845..291850,291896..291907,
291914..291916,291986..291988,291992..291997,
292016..292018,292028..292030,292049..292051,
292070..292072,292082..292084,292088..292093,
292097..292102,292166..292171,292184..292186,
292196..292198,292205..292210,292214..292219,
292226..292231,292238..292243,292253..292273,
292283..292288,292292..292294,292307..292309,
292598..292600)
/gene="purB"
/locus_tag="NMB0284"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176470"
misc_feature order(291530..291532,291611..291613,291770..291772,
292001..292003,292163..292165,292169..292171,
292184..292186)
/gene="purB"
/locus_tag="NMB0284"
/note="active site"
/db_xref="CDD:176470"
gene 292714..294583
/locus_tag="NMB0285"
/note="O-antigen acetylase, authentic frameshift; this
gene contains a frame shift which is not the result of
sequencing error; identified by similarity to EGAD:153711"
/pseudo
/db_xref="GeneID:902396"
gene complement(294874..295488)
/locus_tag="NMB0286"
/db_xref="GeneID:902397"
CDS complement(294874..295488)
/locus_tag="NMB0286"
/note="identified by similarity to EGAD:5824; match to
protein family HMM PF04391"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273341.1"
/db_xref="GI:15676209"
/db_xref="GeneID:902397"
/translation="MNFTRLLNQVLSTVQKKGNTFSDSPLNSFGGGALVAGVASMLLN
GKNRKTITKIGSTAALGYLAYRGYQMWQQNKGRATVTQSDFQPAGETEETYSRTVLRT
MIAAAASDGMIDEAERRTIEQESGTDPETAAWLAAEYRLPASIEDIAAAVGNDEALAA
EAYLAARLVCADLSRKETVFLARLSQALKLDDNLVESLERQLGF"
misc_feature complement(294877..295488)
/locus_tag="NMB0286"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2979"
/db_xref="CDD:225526"
misc_feature complement(294919..295194)
/locus_tag="NMB0286"
/note="tellurium resistance terB-like protein, subgroup 3;
Region: terB_like_YebE; cd07178"
/db_xref="CDD:143582"
misc_feature complement(order(294958..294960,294970..294972,
295138..295140,295159..295161))
/locus_tag="NMB0286"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:143582"
gene complement(295525..297675)
/gene="dinG"
/locus_tag="NMB0287"
/db_xref="GeneID:902398"
CDS complement(295525..297675)
/gene="dinG"
/locus_tag="NMB0287"
/note="helicase involved in DNA repair and perhaps also
replication"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase DinG"
/protein_id="NP_273342.1"
/db_xref="GI:15676210"
/db_xref="GeneID:902398"
/translation="MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRT
LAREEGGEPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQE
QLVDRDLPFLVEKSGLELTFALAKGRGRYLCPYKLYRLTQSNAQQNLLGFEAPAVLWD
SKPKPEELKLLRDIADEFSARRFNGDRDTWPEKIDDAIWLKVTNDRHGCLKTACPNRP
ECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALS
RFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELANLADEAAASLLDSLHEWQFHLAE
EPSLSLGVSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAIAARSLLKHVIGLNDALS
AARREKEQDGALLDRLTSEFGLFIARIEQISAVWDLLSTVPLEGEEPLAKWITRRADD
KNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLMLRQTGLQWLPETTT
LALKSPFDFEKQGELYIPPIYASPKDPEAHTAAVIEWLPKLISPTEAIGTLVLFSSRK
QMQDVALRLPGDYLPLLLVQGELPKAVLLQKHHRAIEEGKASIIFGLDSFAEGLDLPG
TACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQAVGRLIRT
EQDYGRVTILDNRIKTQRYGQQLLAGLPPFKRIG"
misc_feature complement(295531..297675)
/gene="dinG"
/locus_tag="NMB0287"
/note="ATP-dependent DNA helicase DinG; Provisional;
Region: dinG; PRK11747"
/db_xref="CDD:236966"
misc_feature complement(<297355..297489)
/gene="dinG"
/locus_tag="NMB0287"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cl17251"
/db_xref="CDD:247805"
misc_feature complement(296848..>297018)
/gene="dinG"
/locus_tag="NMB0287"
/note="DEAD_2; Region: DEAD_2; pfam06733"
/db_xref="CDD:219153"
misc_feature complement(295540..296007)
/gene="dinG"
/locus_tag="NMB0287"
/note="Helicase C-terminal domain; Region: Helicase_C_2;
pfam13307"
/db_xref="CDD:222037"
gene 297747..297977
/locus_tag="NMB0288"
/db_xref="GeneID:902399"
CDS 297747..297977
/locus_tag="NMB0288"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273343.1"
/db_xref="GI:15676211"
/db_xref="GeneID:902399"
/translation="MGGEVNRADVVGFLVAAFEIPVVALDCGYVAVPVVGRRGNRMRP
LPCAADDGLAAFFAGDGNGVGLGGGDLGIPDD"
gene complement(298070..299370)
/gene="phrB"
/locus_tag="NMB0289"
/note="deoxyribodipyrimidine photolyase, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to EGAD:22646"
/pseudo
/db_xref="GeneID:902400"
gene complement(299360..300271)
/locus_tag="NMB0290"
/db_xref="GeneID:902401"
CDS complement(299360..300271)
/locus_tag="NMB0290"
/note="identified by similarity to GP:1139588; match to
protein family HMM PF00126; match to protein family HMM
PF03466"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_273344.1"
/db_xref="GI:15676212"
/db_xref="GeneID:902401"
/translation="MDTLFSLKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTV
QAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWF
AGSQICNWLAEYRERYPEVALELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAE
IEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPV
IRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRA
FLSAKVRSFIDFLNEKIASRKGCRNAV"
misc_feature complement(299384..300265)
/locus_tag="NMB0290"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(300083..300253)
/locus_tag="NMB0290"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(299405..299998)
/locus_tag="NMB0290"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(299468..299470,299549..299551,
299600..299602,299789..299791,299795..299797,
299837..299839,299954..299956,299966..299968))
/locus_tag="NMB0290"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(299573..299575,299582..299587,
299606..299620,299708..299710,299891..299911,
299915..299917,299927..299929,299936..299941,
299945..299950,299960..299965))
/locus_tag="NMB0290"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene 300379..300777
/locus_tag="NMB0291"
/db_xref="GeneID:902402"
CDS 300379..300777
/locus_tag="NMB0291"
/note="identified by similarity to EGAD:160719; match to
protein family HMM PF07681"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273345.1"
/db_xref="GI:15676213"
/db_xref="GeneID:902402"
/translation="MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSP
GGLLLLAGILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGES
AVLFCFVFLYIAAAGGGAWSLDRLFFKRKA"
misc_feature 300394..300774
/locus_tag="NMB0291"
/note="Predicted membrane protein [Function unknown];
Region: COG2259"
/db_xref="CDD:225168"
gene 300826..301431
/locus_tag="NMB0292"
/db_xref="GeneID:902403"
CDS 300826..301431
/locus_tag="NMB0292"
/note="identified by similarity to EGAD:51135"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273346.1"
/db_xref="GI:15676214"
/db_xref="GeneID:902403"
/translation="MTRQSLQQAAESRRSIYSLNKNLPVGKDEVVQIVEHAVLHTPSS
FNSQSARVVVLFGEEHDKVWQFVEDALRAVVPADSFEPTAQKLNLFKAGAATILFYED
QNVVKGLQEQFPAYAANFPVWADQANAMVQYAVWTTLAAVGVGANLQHYNPLPDAAIA
KAWNIPENWLLRAQMVIGGIEGAAGEKTFEPVAERLKVFGA"
misc_feature 300841..301416
/locus_tag="NMB0292"
/note="Nitroreductase-like family 4. A subfamily of the
nitroreductase family containing uncharacterized proteins
that are similar to nitroreductase. Nitroreductase
catalyzes the reduction of nitroaromatic compounds such as
nitrotoluenes, nitrofurans and...; Region:
Nitroreductase_4; cd02140"
/db_xref="CDD:239055"
misc_feature order(300841..300843,300853..300858,300862..300864,
300904..300906,300928..300930,300934..300936,
300940..300945,300949..300951,300961..300963,
300967..300969,300973..300993,301000..301002,
301192..301194,301198..301203,301213..301215,
301222..301227,301246..301248,301273..301275,
301312..301314,301387..301395,301399..301401,
301408..301416)
/locus_tag="NMB0292"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239055"
misc_feature order(300862..300870,300874..300876,301267..301275,
301384..301386)
/locus_tag="NMB0292"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239055"
gene 301617..303728
/locus_tag="NMB0293"
/db_xref="GeneID:902404"
CDS 301617..303728
/locus_tag="NMB0293"
/note="identified by similarity to EGAD:48295; match to
protein family HMM PF00593; match to protein family HMM
PF07715; match to protein family HMM TIGR01783"
/codon_start=1
/transl_table=11
/product="TonB-dependent receptor"
/protein_id="NP_273347.1"
/db_xref="GI:15676215"
/db_xref="GeneID:902404"
/translation="MKISFHLALLPTLIIASFPVAAADTQDNGEHYTATLPTVSVVGQ
SDTSVLKGYINYDEAAVTRNGQLIKETPQTIDTLNIQKNKNYGTNDLSSILEGNAGID
AAYDMRGESIFLRGFQADASDIYRDGVRESGQVRRSTANIERVEILKGPSSVLYGRTN
GGGVINMVSKYANFKQSRNIGAVYGSWANRSLNMDINEVLNKNVAIRLTGEVGRANSF
RSGIDSKNVMVSPSITVKLDNGLKWTGQYTYDNVERTPDRSPTKSVYDRFGLPYRMGF
AHRNDFVKDKLQVWRSDLEYAFNDKWRAQWQLAHRTAAQDFDHFYAGSENGNLIKRNY
AWQQTDNKTLSSNLTLNGDYTIGRFENHLTVGMDYSREHRNPTLGFSSAFSASINPYD
RASWPASGRLQPILTQNRHKADSYGIFVQNIFSATPDLKFVLGGRYDKYTFNSENKLT
GSSRQYSGHSFSPNIGAVWNINPVHTLYASYNKGFAPYGGRGGYLSIDTLSSAVFNAD
PEYTRQYETGVKSSWLDDRLSTTLSAYQIERFNIRYRPDPKNNPYIYAVSGKHRSRGV
ELSAIGQIIPKKLYLRGSLGVMQAKVVEDKENPDRVGIHLNNTSNVTGNLFFRYTPTE
NLYGEIGVTGTGKRYGYNSRNKEVTTLPGFARVDAMLGWNHKNVNVTFAAANLLNQKY
WRSDSMPGNPRGYTARVNYRF"
misc_feature 301662..303725
/locus_tag="NMB0293"
/note="Outer membrane receptor proteins, mostly Fe
transport [Inorganic ion transport and metabolism];
Region: CirA; COG1629"
/db_xref="CDD:224544"
misc_feature 301875..303725
/locus_tag="NMB0293"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:238657"
misc_feature order(301893..301922,301950..301967,301986..302006,
302031..302063,302097..302123)
/locus_tag="NMB0293"
/note="N-terminal plug; other site"
/db_xref="CDD:238657"
misc_feature order(302559..302561,302634..302636)
/locus_tag="NMB0293"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:238657"
gene 303843..304538
/gene="dsbA-2"
/locus_tag="NMB0294"
/db_xref="GeneID:902405"
CDS 303843..304538
/gene="dsbA-2"
/locus_tag="NMB0294"
/note="identified by similarity to GP:2707768; match to
protein family HMM PF01323"
/codon_start=1
/transl_table=11
/product="thiol:disulfide interchange protein DsbA"
/protein_id="NP_273348.1"
/db_xref="GI:15676216"
/db_xref="GeneID:902405"
/translation="MKLKTLALTSLTLLALAACSKQAETSVPADSAQSSSSAPAAPAE
LNEGVNYTVLSTPIPQQQAGKIEVLEFFGYFCPHCAHLEPVLSEHIKTFKDDTYMRRE
HVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
DGKKVLAAFEAPESQARAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQ
LVDKVREEQKKPQ"
misc_feature 303981..304517
/gene="dsbA-2"
/locus_tag="NMB0294"
/note="DsbA family, DsbA subfamily; DsbA is a monomeric
thiol disulfide oxidoreductase protein containing a redox
active CXXC motif imbedded in a TRX fold. It is involved
in the oxidative protein folding pathway in prokaryotes,
and is the strongest thiol...; Region: DsbA_DsbA; cd03019"
/db_xref="CDD:239317"
misc_feature 304041..304445
/gene="dsbA-2"
/locus_tag="NMB0294"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:216433"
misc_feature order(304068..304070,304074..304079,304422..304424)
/gene="dsbA-2"
/locus_tag="NMB0294"
/note="catalytic residues [active]"
/db_xref="CDD:239317"
misc_feature 304158..304166
/gene="dsbA-2"
/locus_tag="NMB0294"
/note="hinge region; other site"
/db_xref="CDD:239317"
misc_feature order(304176..304202,304215..304274,304284..304310,
304329..304358)
/gene="dsbA-2"
/locus_tag="NMB0294"
/note="alpha helical domain; other site"
/db_xref="CDD:239317"
gene complement(304869..306239)
/gene="ffh"
/locus_tag="NMB0295"
/db_xref="GeneID:902406"
CDS complement(304869..306239)
/gene="ffh"
/locus_tag="NMB0295"
/note="identified by similarity to EGAD:6526; match to
protein family HMM PF00448; match to protein family HMM
PF02881; match to protein family HMM PF02978; match to
protein family HMM TIGR00959"
/codon_start=1
/transl_table=11
/product="signal recognition particle protein"
/protein_id="NP_273349.1"
/db_xref="GI:15676217"
/db_xref="GeneID:902406"
/translation="MLDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVA
LPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAV
VLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFF
PSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETL
FVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVG
EKINGLEPFHPDRLAGRILGMGDVLTLIEDVQKGIDEEAAAKMAKKLHKGKGFDLNDF
KEQIQQMRNMGGLENLMSKMPGELGQISKQIPEGTAEKAMGKVEAIINSMTPKERANP
ALLKASRKRRIAMGAGTTVQEVNKLLKQFEQMQQMMKMFSGNGLGKLMRMAKGMRGIK
GMFPGL"
misc_feature complement(304881..306239)
/gene="ffh"
/locus_tag="NMB0295"
/note="signal recognition particle protein; Provisional;
Region: PRK10867"
/db_xref="CDD:236780"
misc_feature complement(305982..306215)
/gene="ffh"
/locus_tag="NMB0295"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; smart00963"
/db_xref="CDD:214941"
misc_feature complement(305418..305939)
/gene="ffh"
/locus_tag="NMB0295"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:239389"
misc_feature complement(305898..305921)
/gene="ffh"
/locus_tag="NMB0295"
/note="P loop; other site"
/db_xref="CDD:239389"
misc_feature complement(order(305484..305489,305496..305498,
305661..305663,305826..305828))
/gene="ffh"
/locus_tag="NMB0295"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:239389"
misc_feature complement(304986..305255)
/gene="ffh"
/locus_tag="NMB0295"
/note="Signal peptide binding domain; Region: SRP_SPB;
pfam02978"
/db_xref="CDD:202493"
gene 306459..307265
/locus_tag="NMB0296"
/db_xref="GeneID:902407"
CDS 306459..307265
/locus_tag="NMB0296"
/note="identified by similarity to GP:706856; match to
protein family HMM PF01578"
/codon_start=1
/transl_table=11
/product="CcsA-like protein"
/protein_id="NP_273350.1"
/db_xref="GI:15676218"
/db_xref="GeneID:902407"
/translation="MPTVFIFLTAVYAGLGAFAWHCQQQGCGRDYPWKTELPVLGAAL
TVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYPLRGVQLLLYPCAAL
MLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRSF
SKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGIL
SWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILKR"
misc_feature 306459..307262
/locus_tag="NMB0296"
/note="ABC-type uncharacterized transport system, permease
component [General function prediction only]; Region:
COG4137"
/db_xref="CDD:226621"
gene 307279..307377
/locus_tag="NMB0297"
/db_xref="GeneID:902408"
CDS 307279..307377
/locus_tag="NMB0297"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273351.1"
/db_xref="GI:15676219"
/db_xref="GeneID:902408"
/translation="MPSESPSFRQHIHKGAPAGGGRGKDCWRRRSI"
gene 307408..307593
/locus_tag="NMB0298"
/db_xref="GeneID:902409"
CDS 307408..307593
/locus_tag="NMB0298"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273352.1"
/db_xref="GI:15676220"
/db_xref="GeneID:902409"
/translation="MTNFPKKIPLKALTVFPCGRIVRFFAAAEVADELKSIAQNVGDI
ERYLDRRKEYFIIRNAL"
gene 307721..309264
/locus_tag="NMrrnaB16S"
/db_xref="GeneID:902410"
rRNA 307721..309264
/locus_tag="NMrrnaB16S"
/product="16S ribosomal RNA"
/db_xref="GeneID:902410"
gene 309364..309440
/gene="tRNA-Ile-3"
/locus_tag="NMBt13"
/db_xref="GeneID:902411"
tRNA 309364..309440
/gene="tRNA-Ile-3"
/locus_tag="NMBt13"
/product="tRNA-Ile"
/db_xref="GeneID:902411"
gene 309446..309521
/gene="tRNA-Ala-3"
/locus_tag="NMBt14"
/db_xref="GeneID:902412"
tRNA 309446..309521
/gene="tRNA-Ala-3"
/locus_tag="NMBt14"
/product="tRNA-Ala"
/db_xref="GeneID:902412"
gene 309928..312818
/locus_tag="NMrrnaB23S"
/db_xref="GeneID:902413"
rRNA 309928..312818
/locus_tag="NMrrnaB23S"
/product="23S ribosomal RNA"
/db_xref="GeneID:902413"
gene 312912..313028
/locus_tag="NMrrnaB5S"
/db_xref="GeneID:902414"
rRNA 312912..313028
/locus_tag="NMrrnaB5S"
/product="5S ribosomal RNA"
/db_xref="GeneID:902414"
gene 313104..313550
/locus_tag="NMB0299"
/db_xref="GeneID:902415"
CDS 313104..313550
/locus_tag="NMB0299"
/note="identified by similarity to EGAD:36757; match to
protein family HMM PF00633; match to protein family HMM
TIGR00426; match to protein family HMM TIGR01259"
/codon_start=1
/transl_table=11
/product="comEA-related protein"
/protein_id="NP_273353.1"
/db_xref="GI:15676221"
/db_xref="GeneID:902415"
/translation="MSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFAT
LKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNG
AFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK"
misc_feature 313161..313493
/locus_tag="NMB0299"
/note="comEA protein; Region: comE; TIGR01259"
/db_xref="CDD:213597"
misc_feature 313314..313394
/locus_tag="NMB0299"
/note="Helix-hairpin-helix motif; Region: HHH; pfam00633"
/db_xref="CDD:109681"
gene 313610..313914
/locus_tag="NMB0300"
/note="hypothetical protein, degenerate; this region
contains one or more premature stops and/or frameshifts
which are not the result of sequencing error; identified
by Glimmer2"
/pseudo
/db_xref="GeneID:902416"
gene 313965..314171
/locus_tag="NMB0301"
/db_xref="GeneID:902417"
CDS 313965..314171
/locus_tag="NMB0301"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273354.1"
/db_xref="GI:15676222"
/db_xref="GeneID:902417"
/translation="MFDGAKVVRRVEGNLWVFGMVALEKTCFKGQMPSENRFQTAFSV
YLKQTGKGSNILQSSYSHKRFIVN"
gene 314291..314943
/locus_tag="NMB0302"
/note="IS1016C2 transposase, degenerate; this region
contains one or more premature stops and/or frameshifts
which are not the result of sequencing error; identified
by similarity to EGAD:11327"
/pseudo
/db_xref="GeneID:902418"
gene 315031..315317
/locus_tag="NMB0303"
/note="transposase, degenerate; this region contains one
or more premature stops and/or frameshifts which are not
the result of sequencing error; identified by similarity
to EGAD:50313"
/pseudo
/db_xref="GeneID:902419"
gene complement(315299..315556)
/locus_tag="NMB0304"
/note="class 5 outer membrane protein, degenerate; this
region contains one or more premature stops and/or
frameshifts which are not the result of sequencing error;
identified by similarity to GP:1177567"
/pseudo
/db_xref="GeneID:902420"
gene complement(315740..315898)
/locus_tag="NMB0305"
/db_xref="GeneID:902421"
CDS complement(315740..315898)
/locus_tag="NMB0305"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273355.1"
/db_xref="GI:15676223"
/db_xref="GeneID:902421"
/translation="MLKTKRTHCLKKDLMGMRVFPTLFPFIYPHYRKKNMKKPCLHSH
LQPCPPLR"
gene 316068..316262
/locus_tag="NMB0306"
/db_xref="GeneID:902422"
CDS 316068..316262
/locus_tag="NMB0306"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273356.1"
/db_xref="GI:15676224"
/db_xref="GeneID:902422"
/translation="MLLQRSLLVYEILPDVKAESAAGVFCTGLSWKWENGCSVQVCPN
EWRVLFLSICFFLFEIKFLK"
STS 316337..317233
/standard_name="Fgf8"
/db_xref="UniSTS:506892"
gene 316410..317465
/gene="aroG"
/locus_tag="NMB0307"
/db_xref="GeneID:902423"
CDS 316410..317465
/gene="aroG"
/locus_tag="NMB0307"
/EC_number="2.5.1.54"
/note="catalyzes the formation of
3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from
phosphoenolpyruvate and D-erythrose 4-phosphate,
phenylalanine sensitive"
/codon_start=1
/transl_table=11
/product="phospho-2-dehydro-3-deoxyheptonate aldolase"
/protein_id="NP_273357.1"
/db_xref="GI:15676225"
/db_xref="GeneID:902423"
/translation="MTHHYPTDDIKIKEVKELLPPIAHLYELPISKEASGLVHRTRQE
ISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRT
TVGWKGLINDPHLDGTFDINFGLRQARSLLLSLNNMGMPASTEFLDMITPQYYADLIS
WGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAG
HSAIVHTGGNPDCHVILRGGKEPNYDAEHVSEAAEQLRAAGVTDKLMIDCSHANSRKD
YTRQMEVAQDIAAQLEQDGGNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWGATEE
LLALLAGANKKRMARAS"
misc_feature 316416..317396
/gene="aroG"
/locus_tag="NMB0307"
/note="phospho-2-dehydro-3-deoxyheptonate aldolase;
Validated; Region: PRK09261"
/db_xref="CDD:236435"
misc_feature 316545..317396
/gene="aroG"
/locus_tag="NMB0307"
/note="DAHP synthetase I family; Region: DAHP_synth_1;
pfam00793"
/db_xref="CDD:216123"
gene 317533..318021
/gene="folA"
/locus_tag="NMB0308"
/db_xref="GeneID:902424"
CDS 317533..318021
/gene="folA"
/locus_tag="NMB0308"
/EC_number="1.5.1.3"
/note="identified by similarity to EGAD:8105; match to
protein family HMM PF00186"
/codon_start=1
/transl_table=11
/product="dihydrofolate reductase"
/protein_id="NP_273358.1"
/db_xref="GI:15676226"
/db_xref="GeneID:902424"
/translation="MLKITLIAACAENLCIGAGNAMPWHIPEDFAFFKAYTLGKPVIM
GRKTWESLPVKPLPGRRNIVISRQADYCAAGAETAASLEAALALCAGAEEAVIMGGAQ
IYGQAMPLATDLRITEVDLSVEGDAFFPAIDRTHWKEAERTERRVSSKGTRYAFVHYL
RY"
misc_feature 317539..318015
/gene="folA"
/locus_tag="NMB0308"
/note="Dihydrofolate reductase [Coenzyme metabolism];
Region: FolA; COG0262"
/db_xref="CDD:223340"
misc_feature 317542..318009
/gene="folA"
/locus_tag="NMB0308"
/note="Dihydrofolate reductase (DHFR). Reduces
7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
as a cofactor. This is an essential step in the
biosynthesis of deoxythymidine phosphate since
5,6,7,8-tetrahydrofolate is required to regenerate 5;
Region: DHFR; cd00209"
/db_xref="CDD:238127"
misc_feature order(317551..317553,317602..317604,317617..317619,
317710..317712,317842..317844,317881..317883)
/gene="folA"
/locus_tag="NMB0308"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:238127"
misc_feature order(317557..317559,317578..317580,317668..317676,
317731..317733,317827..317838)
/gene="folA"
/locus_tag="NMB0308"
/note="NADP+ binding site [chemical binding]; other site"
/db_xref="CDD:238127"
gene complement(318371..318847)
/locus_tag="NMB0309"
/db_xref="GeneID:902425"
CDS complement(318371..318847)
/locus_tag="NMB0309"
/note="identified by similarity to EGAD:49208; match to
protein family HMM PF01928"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273359.1"
/db_xref="GI:15676227"
/db_xref="GeneID:902425"
/translation="MPIEIERRFLIGNDNWRQYADEPLLLRQGYLSVEKERTVRVRIA
GKQAWLTLKGYISEISRSEFEYEIPLADAEKMMETMCPFKMEKWRYPVRWGGSLFEID
VFLGDNAPLVVAEIELPDENADFDRPDWLGREITADGMFTNAYLSRHPFSSWKNAV"
misc_feature complement(318398..318841)
/locus_tag="NMB0309"
/note="CYTH-like Clostridium thermocellum TTM-like
subgroup 1; Region: CYTH-like_CthTTM-like_1; cd07891"
/db_xref="CDD:143629"
misc_feature complement(order(318497..318499,318503..318505,
318542..318544,318581..318583,318587..318589,
318653..318655,318659..318661,318689..318691,
318722..318724,318728..318730,318830..318832,
318836..318838))
/locus_tag="NMB0309"
/note="putative active site [active]"
/db_xref="CDD:143629"
misc_feature complement(order(318497..318499,318503..318505,
318830..318832,318836..318838))
/locus_tag="NMB0309"
/note="putative metal binding residues [ion binding];
other site"
/db_xref="CDD:143629"
misc_feature complement(order(318824..318826,318830..318832,
318836..318838))
/locus_tag="NMB0309"
/note="signature motif; other site"
/db_xref="CDD:143629"
misc_feature complement(order(318611..318613,318620..318625,
318632..318634,318644..318652,318656..318658,
318692..318694,318698..318700,318731..318733,
318737..318739,318752..318757))
/locus_tag="NMB0309"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143629"
misc_feature complement(order(318581..318583,318587..318589,
318689..318691,318728..318730))
/locus_tag="NMB0309"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:143629"
gene complement(318859..319287)
/locus_tag="NMB0310"
/db_xref="GeneID:902426"
CDS complement(318859..319287)
/locus_tag="NMB0310"
/note="identified by similarity to EGAD:89978; match to
protein family HMM PF03653"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273360.1"
/db_xref="GI:15676228"
/db_xref="GeneID:902426"
/translation="MMFSWFKLFHLFFVISWFAGLFYLPRIFVNMAMIDVPRGNPEYV
RLSGMAVRLYRFMSPLGFGAVVFGAAIPFAAGWWGSGWVHVKLCLGLMLLAYQLYCGV
LLRRFQDYSNAFSHRWYRVFNEIPVLLMVAALYLVVFKPF"
misc_feature complement(318862..319287)
/locus_tag="NMB0310"
/note="Predicted membrane protein [Function unknown];
Region: COG1981"
/db_xref="CDD:224892"
gene 319399..319644
/locus_tag="NMB0311"
/db_xref="GeneID:902427"
CDS 319399..319644
/locus_tag="NMB0311"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273361.1"
/db_xref="GI:15676229"
/db_xref="GeneID:902427"
/translation="MLKSIELNSHIRNRLAEYLKGRGMDFQTAMQEEKGNKEIAAIVH
SGLPTLVRKLYSEQKMQKFFWEKRDLIADYISRRMQG"
gene 321096..323187
/gene="vapA"
/locus_tag="NMB0312"
/note="virulence-associated protein VapA, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to GP:4206706"
/pseudo
/db_xref="GeneID:902428"
gene 323429..324895
/locus_tag="NMB0313"
/db_xref="GeneID:902429"
CDS 323429..324895
/locus_tag="NMB0313"
/note="identified by similarity to GP:3523136; match to
protein family HMM PF04575; match to protein family HMM
PF07719"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273362.1"
/db_xref="GI:15676230"
/db_xref="GeneID:902429"
/translation="MVIFYFCGKTFMPARNRWMLLLPLLASAAYAEETPREPDLRSRP
EFRLHEAEVKPIDREKVPGQVREKGKVLQIDGETLLKNPELLSRAMYSAVVSNNIAGI
RVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAA
ALFENRQNEAAADQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNI
NQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKWSLKNGWYTTAGGDVSGRVYPGNKKF
NDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQTLS
SAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRY
GLRFAWGQEWGGSGLSSLLRLGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRAL
HFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF"
misc_feature 323786..>323983
/locus_tag="NMB0313"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(323786..323788,323792..323797,323804..323809,
323894..323899,323903..323908,323915..323920)
/locus_tag="NMB0313"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature 323792..323971
/locus_tag="NMB0313"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:222123"
misc_feature order(323801..323803,323837..323839,323849..323851,
323858..323860,323903..323905,323939..323941,
323951..323953,323966..323968)
/locus_tag="NMB0313"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature 323981..324892
/locus_tag="NMB0313"
/note="Protein of unknown function (DUF560); Region:
DUF560; pfam04575"
/db_xref="CDD:218155"
gene complement(325096..326064)
/locus_tag="NMB0314"
/db_xref="GeneID:902430"
CDS complement(325096..326064)
/locus_tag="NMB0314"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273363.1"
/db_xref="GI:15676231"
/db_xref="GeneID:902430"
/translation="MKLTLAIPSLNLDEDEIRIPLCLHAFNKILQYGSLHRQSCTASA
FYARYLWCGRLVERAAQSLNMPSEAVALATPVWQKMGMHQANVLTAEYLNVGTDEAER
ICRDLSAFYGDIPWRFVPVLPELWLVSLPCAYRWGAKPVLDLGGLLGADDQPDGEDAL
EWLRVQTEIQMWLAAHPVNHNRKKRGLPELNGLWLWDGTNGGAQGGTLFADTVWSRFH
SDRRALPDNFRAYEETAAHLPDTHHILFMDDLRLTALTGDRERYAAILQQWEERWFAP
IYEAVRTGKIKRLDITTDGQHGGTLTFKPADRWKFWRGAKTFDGIW"
misc_feature complement(325099..326064)
/locus_tag="NMB0314"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4255"
/db_xref="CDD:226706"
gene 326142..327434
/locus_tag="NMB0315"
/db_xref="GeneID:902431"
CDS 326142..327434
/locus_tag="NMB0315"
/note="identified by similarity to GP:146890; match to
protein family HMM PF01551"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273364.1"
/db_xref="GI:15676232"
/db_xref="GeneID:902431"
/translation="MAVFPLSAKHRKYALRALAVSIILVSAAYIASTERTERVRPQRV
EQNLPPLSWGGSGVQTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLR
HLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKKGGIWRRSASEADMKVLPTL
RSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLMYDSLYFHGQQ
VAAGDILAAEVVKGGTRHQAFYYRSDKEGGGGGNYYDEDGKVLQEKGGFNIEPLVYTR
ISSPFGYRMHPILHTWRLHTGIDYAAPQGTPVRASADGVITFKGRKGGYGNAVMIRHA
NGVETLYAHLSAFSQAEGNVRGGEVIGFVGSTGRSTGPHLHYEARINGQPVNPVSVAL
PTPELTQADKAAFAAQKQKADALLARLRGIPVTVSQSD"
misc_feature <326724..327320
/locus_tag="NMB0315"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:223810"
misc_feature 327018..327302
/locus_tag="NMB0315"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:216566"
gene complement(327937..328623)
/locus_tag="NMB0316"
/db_xref="GeneID:902432"
CDS complement(327937..328623)
/locus_tag="NMB0316"
/note="identified by similarity to EGAD:8792; match to
protein family HMM PF02592; match to protein family HMM
TIGR00697"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273365.1"
/db_xref="GI:15676233"
/db_xref="GeneID:902432"
/translation="MYAFTAAQQQKALFRLVLFHILIIAASNYLVQFPFQIFGIHTTW
GAFSFPFIFLATDLTVRIFGSHLARRIIFWVMFPALLLSYVFSVLFHNGSWTGLGALS
EFNTFVGRIALASFAAYAIGQILDIFVFNKLRRLKAWWIAPTASTVIGNALDTLVFFA
VAFYASSDGFMAANWQGIAFVDYLFKLTVCTLFFLPAYGVILNLLTKKLTTLQTKQAQ
DRPAPSLQNP"
misc_feature complement(328015..328623)
/locus_tag="NMB0316"
/note="hypothetical protein; Provisional; Region:
PRK11212"
/db_xref="CDD:183041"
gene complement(328698..329171)
/locus_tag="NMB0317"
/db_xref="GeneID:902433"
CDS complement(328698..329171)
/locus_tag="NMB0317"
/note="NADPH-dependent; catalyzes the reduction of
7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in
queuosine biosynthesis"
/codon_start=1
/transl_table=11
/product="7-cyano-7-deazaguanine reductase"
/protein_id="NP_273366.1"
/db_xref="GI:15676234"
/db_xref="GeneID:902433"
/translation="MSRNNEELQGISLLGNQKTQYPTGYAPEILEAFDNKHPDNDYFV
KFVCPEFTSLCPMTGQPDFATIYIRYIPHIKMVESKSLKLYLFSFRNHGDFHEDCVNI
IMKDLIALMDPKYIEVFGEFTPRGGIAIHPFANYGKAGTEFETLARKRLFEHDAQ"
misc_feature complement(328719..329165)
/locus_tag="NMB0317"
/note="Enzyme related to GTP cyclohydrolase I [General
function prediction only]; Region: COG0780"
/db_xref="CDD:223851"
gene 329613..330767
/gene="farA"
/locus_tag="NMB0318"
/db_xref="GeneID:902434"
CDS 329613..330767
/gene="farA"
/locus_tag="NMB0318"
/note="identified by similarity to EGAD:20365; match to
protein family HMM PF00529"
/codon_start=1
/transl_table=11
/product="fatty acid efflux system protein"
/protein_id="NP_273367.1"
/db_xref="GI:15676235"
/db_xref="GeneID:902434"
/translation="MDTHTDETKLQNTQAKRKRRLTALTLLFALAAAAAGSAFFLWWQ
HEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDNDVLAYERAK
NELVQAVRQNRRQNAATSQAGAQVALRRADLARAQDDLRRRSALAESGAVSAEELAHA
RAAVSQAQAAVKAALAEESSARAALGGQVSLREQPAVQTAIGRLKDAWLNLQRTQIRA
PADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPAELVSDL
YGKQIVYRGRVAGFSAGTGSAFSLIPAQNATGNWIKVVQRVPVRIVLNREDVDRHPLR
IGLSMTVKVDTSAAGAPVSKTPGAALPEMESTDWSEVDRTVDEILGQSAP"
misc_feature 329736..330641
/gene="farA"
/locus_tag="NMB0318"
/note="efflux pump membrane protein (multidrug resistance
protein A); Region: 8a0101; TIGR00998"
/db_xref="CDD:233228"
misc_feature 330255..330524
/gene="farA"
/locus_tag="NMB0318"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:222128"
gene 330791..332317
/gene="farB"
/locus_tag="NMB0319"
/db_xref="GeneID:902435"
CDS 330791..332317
/gene="farB"
/locus_tag="NMB0319"
/note="identified by similarity to EGAD:19655; match to
protein family HMM PF07690; match to protein family HMM
TIGR00711"
/codon_start=1
/transl_table=11
/product="fatty acid efflux system protein"
/protein_id="NP_273368.1"
/db_xref="GI:15676236"
/db_xref="GeneID:902435"
/translation="MDYPPLKGAALAWVTLSLGLAVFMEVLDTTIANVAVPVIAGNLG
AATTQGTWVITSFSVANAVSVPLTGFLAKRIGEVKLFTAAAVGFVITSWLCGIAPNLQ
SLVVFRILQGFIAGPLIPLSQSLLMASYPPAKRTLALALWAMTVVVAPVLGPILGGWI
SGNWHWGWIFFINIPIGIISAWITWKHLKYRETETVKMPTDYVGLTLMVVGIGALQMM
LDRGKELDWFASGEIITLGVVALVCLSYFIVWELGEKYPIVDLSLFKDRNFTVGVIAT
SLGFMVYMGTLTLLPLVLQTNLGYTSTWAGLAAAPVGILPVFLSPLIGRFGNKIDMRL
FVTASFLTFAFTFYWRTDFYADMDIGNVIWPQFWQGVGVAMFFLPLTTITLSHMKGGQ
IAAAGSLSNFLRVLMGGVGVSVVSTLWERREALHHTRFAEHITPYSATLHETAAHLSQ
HGVSDIQTLGIINNTITQQGFIIGSNEIFMAGSLLFIIMIPVIWLAKPPFHNGGGGGH
"
misc_feature 330833..332275
/gene="farB"
/locus_tag="NMB0319"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
misc_feature 330833..>331282
/gene="farB"
/locus_tag="NMB0319"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(330875..330877,330884..330892,330896..330901,
330950..330952,330959..330964,330971..330973,
330983..330988,330992..330997,331133..331138,
331145..331150,331157..331162,331169..331171,
331205..331210,331217..331222,331238..331240)
/gene="farB"
/locus_tag="NMB0319"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 332380..332529
/locus_tag="NMB0320"
/db_xref="GeneID:902436"
CDS 332380..332529
/locus_tag="NMB0320"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273369.1"
/db_xref="GI:15676237"
/db_xref="GeneID:902436"
/translation="MQQFPKSAIIAPHLFRTCKRSTDATIGRIIRAKQPFFFKTLELT
LFFVV"
gene 332567..332800
/gene="rpmB"
/locus_tag="NMB0321"
/db_xref="GeneID:902437"
CDS 332567..332800
/gene="rpmB"
/locus_tag="NMB0321"
/note="required for 70S ribosome assembly"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="NP_273370.1"
/db_xref="GI:15676238"
/db_xref="GeneID:902437"
/translation="MARVCKVTGKRPMSGNNVSHANNKTKRRFLPNLQSRRFWVESEN
RWVRLRVSNAALRTIDKVGIDVVLADLRARGEA"
misc_feature 332567..332794
/gene="rpmB"
/locus_tag="NMB0321"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:234736"
gene 332832..332987
/gene="rpmG"
/locus_tag="NMB0322"
/db_xref="GeneID:902438"
CDS 332832..332987
/gene="rpmG"
/locus_tag="NMB0322"
/note="in Escherichia coli BM108, a mutation that results
in lack of L33 synthesis had no effect on ribosome
synthesis or function; there are paralogous genes in
several bacterial genomes, and a CXXC motif for zinc
binding and an upstream regulation region of the paralog
lacking this motif that are regulated by zinc similar to
other ribosomal proteins like L31; the proteins in this
group lack the CXXC motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="NP_273371.1"
/db_xref="GI:15676239"
/db_xref="GeneID:902438"
/translation="MRDKIKLESSAGTGHFYTTTKNKRTMPGKLEIKKFDPVARKHVV
YKETKLK"
misc_feature 332832..332978
/gene="rpmG"
/locus_tag="NMB0322"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00595"
/db_xref="CDD:179075"
gene complement(333176..334360)
/locus_tag="NMB0323"
/db_xref="GeneID:902439"
CDS complement(333176..334360)
/locus_tag="NMB0323"
/note="identified by similarity to EGAD:19694; match to
protein family HMM PF01360; match to protein family HMM
TIGR01988"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273372.1"
/db_xref="GI:15676240"
/db_xref="GeneID:902439"
/translation="MSLHSDILVVGAGPAGLSFAAELAGSGLKVTLIERSPLTVLQNP
PYDGREIALTHFSREIMQRLGMWDKIPENEIYPLRDAKVLNGRSDYQLHFPQPTEARG
EPADCLGYLISNHNIRRAAYEVVSQLDNVSILTDTVVKEVKTSDNEAQVILENGKILT
ARLLLAADSRFSQTRRQLGISSDMHDYSRTMFVCRMKHTLSNQHTAYECFHYGRTIAL
LPLEEHLTNTVITVDTDKINSVQNLSPEELAASVKEQLKGRLGDMELVSSIHHYPLVG
MIAKRFYGKRSALIGDAAVGMHPVTAHGFNLGLSSADILAKLILEAEQRGQDIGASSL
LEKYSSKHMLHAHPLYHGTNMMLKLFTNETAPAKLLRGLVLRASNNFPPLKKLITKQL
TG"
misc_feature complement(333188..334360)
/locus_tag="NMB0323"
/note="ubiquinone biosynthesis hydroxylase family protein;
Provisional; Region: PRK07608; cl17314"
/db_xref="CDD:247868"
misc_feature complement(333179..334357)
/locus_tag="NMB0323"
/note="hypothetical protein; Provisional; Region:
PRK09126"
/db_xref="CDD:236385"
gene complement(334699..334971)
/gene="rpmA"
/locus_tag="NMB0324"
/db_xref="GeneID:902440"
CDS complement(334699..334971)
/gene="rpmA"
/locus_tag="NMB0324"
/note="involved in the peptidyltransferase reaction during
translation"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L27"
/protein_id="NP_273373.1"
/db_xref="GI:15676241"
/db_xref="GeneID:902440"
/translation="MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTK
FHAGDNVGMGKDHTLFAKVDGYVEFKTKGALNRKTVSIRPYTGSEE"
misc_feature complement(334726..334971)
/gene="rpmA"
/locus_tag="NMB0324"
/note="50S ribosomal protein L27; Validated; Region: rpmA;
PRK05435"
/db_xref="CDD:235464"
gene complement(334996..335304)
/gene="rplU"
/locus_tag="NMB0325"
/db_xref="GeneID:902441"
CDS complement(334996..335304)
/gene="rplU"
/locus_tag="NMB0325"
/note="identified by similarity to EGAD:23167; match to
protein family HMM PF00829; match to protein family HMM
TIGR00061"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L21"
/protein_id="NP_273374.1"
/db_xref="GI:15676242"
/db_xref="GeneID:902441"
/translation="MYAVVKTGGKQYKVSVGEKLKVEQIPAELDSQIELTEVLMIADG
ESVKVGAPFIEGAKVTAKVVAHGRGEKVRIFKMRRRKHYQKRQGHRQNFTQIEIVAIA
"
misc_feature complement(<334999..335304)
/gene="rplU"
/locus_tag="NMB0325"
/note="50S ribosomal protein L21/unknown domain fusion
protein; Provisional; Region: PRK12278"
/db_xref="CDD:237034"
misc_feature complement(334999..335304)
/gene="rplU"
/locus_tag="NMB0325"
/note="50S ribosomal protein L21; Validated; Region: rplU;
PRK05573"
/db_xref="CDD:235510"
gene 335528..336502
/gene="ispB"
/locus_tag="NMB0326"
/db_xref="GeneID:902442"
CDS 335528..336502
/gene="ispB"
/locus_tag="NMB0326"
/note="identified by similarity to EGAD:8604; match to
protein family HMM PF00348"
/codon_start=1
/transl_table=11
/product="octaprenyl-diphosphate synthase"
/protein_id="NP_273375.1"
/db_xref="GI:15676243"
/db_xref="GeneID:902442"
/translation="MLENLPYFQRHLPEDLAKVNEVINRAVQSDVALISQIGTYIISA
GGKRLRPIMTILAGKAVGYDDEKLYSLAAMVEFIHTSTLLHDDVVDESDLRRGRATAN
NLFGNAAAVLVGDFLYTRAFQLMVASGSMRVLEVMADATNIIAEGEVMQLMNIGNTDI
TEEQYIQVIQYKTAKLFEAAAQVGAILGKASPEHERALKDYGMYVGTAFQIIDDVLDY
SGETEETGKNVGDDLAEGKPTLPLIYLMRQGSEQVANDVRTALENADRSYFEKIHDYV
VRSDALAYSIGEARKAVDCAVTALDALPDSEVKDAMIQLAKESLVRVS"
misc_feature 335549..336499
/gene="ispB"
/locus_tag="NMB0326"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:223220"
misc_feature 335612..336361
/gene="ispB"
/locus_tag="NMB0326"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature order(335759..335761,335768..335776,335780..335788,
335792..335797,335810..335815,335969..335971,
335978..335980,336041..336046,336053..336055,
336164..336169,336176..336178,336206..336208,
336221..336223,336236..336238)
/gene="ispB"
/locus_tag="NMB0326"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature 335768..335797
/gene="ispB"
/locus_tag="NMB0326"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature order(335783..335788,335795..335797,335810..335815,
335978..335980,336041..336043,336164..336169,
336176..336178,336206..336208,336221..336223,
336236..336238)
/gene="ispB"
/locus_tag="NMB0326"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature order(335783..335788,335795..335797,335810..335815,
336041..336043,336164..336169)
/gene="ispB"
/locus_tag="NMB0326"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature order(335783..335788,335795..335797,335810..335815,
335978..335980,336041..336043)
/gene="ispB"
/locus_tag="NMB0326"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature order(335801..335845,336185..336190,336206..336223,
336230..336244)
/gene="ispB"
/locus_tag="NMB0326"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature order(336164..336169,336176..336178,336206..336208,
336221..336223,336236..336238)
/gene="ispB"
/locus_tag="NMB0326"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene 336507..336954
/locus_tag="NMB0327"
/note="conserved hypothetical protein, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to EGAD:28095"
/pseudo
/db_xref="GeneID:903205"
gene 336974..337045
/gene="tRNA-Arg-4"
/locus_tag="NMBt15"
/db_xref="GeneID:902443"
tRNA 336974..337045
/gene="tRNA-Arg-4"
/locus_tag="NMBt15"
/product="tRNA-Arg"
/db_xref="GeneID:902443"
gene 337073..337177
/locus_tag="NMB0328"
/db_xref="GeneID:902444"
CDS 337073..337177
/locus_tag="NMB0328"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273377.1"
/db_xref="GI:15676244"
/db_xref="GeneID:902444"
/translation="MLREVSDIRPFSVGGLFCHLKTFSSCLKNRPLGR"
gene 337395..339071
/gene="pilF"
/locus_tag="NMB0329"
/db_xref="GeneID:902445"
CDS 337395..339071
/gene="pilF"
/locus_tag="NMB0329"
/note="identified by similarity to EGAD:21691; match to
protein family HMM PF00437; match to protein family HMM
PF05157; match to protein family HMM TIGR02538"
/codon_start=1
/transl_table=11
/product="type IV pilus assembly protein"
/protein_id="NP_273378.1"
/db_xref="GI:15676245"
/db_xref="GeneID:902445"
/translation="MSVGLLRILVQNQVVTVEQAEHYYNESQAGKEVLPMLFSDGVIS
PKSLAALIARVFSYSILDLRHYPRHRVLMGVLTEEQMVEFHCVPVFRRGDKVFFAVSD
PTQMPQIQKTVSAAGIEVELVIVEDDQLAGLLDWVGSRSTSLLQELGEGQEEEESHTL
YIDNEEAEDGPVPRFIHKTLSDALRSGASDIHFEFYEHNARIRFRVDGQLREVVQPPI
AVRGQLASRIKVMSRLDISEKRIPQDGRMQLTFQKGGKPVDFRVSTLPTLFGEKVVMR
ILNSDAASLNIDQLGFEPFQKKLLLEAIHRPYGMVLVTGPTGSGKTVSLYTCLNILNT
ESVNIATAEDPAEINLPGINQVNVNDKQGLTFAAALKSFLRQDPDIIMVGEIRDLETA
DIAIKAAQTGHMVFSTLHTNNAPATLSRMLNMGVAPFNIASSVSLIMAQRLLRRLCSS
CKQEVERPSASALKEVGFTDEDLAKDWKLYRAVGCDRCRGQGYKGRAGVYEVMPISEE
MQRVIMNNGTEVDILDVAYKEGMVDLRRAGILKVMQGITSLEEVTANTND"
misc_feature 337404..339068
/gene="pilF"
/locus_tag="NMB0329"
/note="type IV-A pilus assembly ATPase PilB; Region:
type_IV_pilB; TIGR02538"
/db_xref="CDD:233914"
misc_feature 337503..337823
/gene="pilF"
/locus_tag="NMB0329"
/note="Type II secretion system (T2SS), protein E,
N-terminal domain; Region: T2SE_Nter; pfam05157"
/db_xref="CDD:218471"
misc_feature 338073..338882
/gene="pilF"
/locus_tag="NMB0329"
/note="PulE/GspE The type II secretory pathway is the main
terminal branch of the general secretory pathway (GSP).
It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which...; Region:
PulE-GspE; cd01129"
/db_xref="CDD:238549"
misc_feature 338337..338360
/gene="pilF"
/locus_tag="NMB0329"
/note="Walker A motif; other site"
/db_xref="CDD:238549"
misc_feature order(338340..338342,338352..338360,338415..338417,
338421..338426,338544..338549)
/gene="pilF"
/locus_tag="NMB0329"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238549"
misc_feature 338532..338549
/gene="pilF"
/locus_tag="NMB0329"
/note="Walker B motif; other site"
/db_xref="CDD:238549"
gene complement(339156..339365)
/locus_tag="NMB0330"
/db_xref="GeneID:902446"
CDS complement(339156..339365)
/locus_tag="NMB0330"
/note="identified by similarity to EGAD:36778; match to
protein family HMM PF03884"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273379.1"
/db_xref="GI:15676246"
/db_xref="GeneID:902446"
/translation="MTESRQTRLQVKCPTCQTAVVWKPENAFRPFCSQRCKLIDLGGW
ADGKYTVSGQTESLPEISEPDMAYR"
misc_feature complement(339162..339356)
/locus_tag="NMB0330"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3024"
/db_xref="CDD:225568"
gene complement(339358..339990)
/locus_tag="NMB0331"
/db_xref="GeneID:903204"
CDS complement(339358..339990)
/locus_tag="NMB0331"
/note="identified by similarity to EGAD:40831; match to
protein family HMM PF01121; match to protein family HMM
TIGR00152"
/codon_start=1
/transl_table=11
/product="kinase"
/protein_id="NP_273380.1"
/db_xref="GI:15677989"
/db_xref="GeneID:903204"
/translation="MTVWVGLTGGIGSGKSAAAQCFADLGVPRIDADAAAHSLTASDG
IALPEIRRLFGDTVFDTQGLLRRDILRKEVFASPSRKALLESVMLPLIFSEIKKQQET
FTDAAYGIVEIPLLTEKRQFISLIRRVLTISAPVEKRIGRVMARSGLTRGEVAAVISH
QASESERLLLADDVLLNDGSLKSLREKTMRLHAFYSGIFASKPTQGKHND"
misc_feature complement(339385..339990)
/locus_tag="NMB0331"
/note="Dephospho-CoA kinase [Coenzyme metabolism]; Region:
CoaE; COG0237"
/db_xref="CDD:223315"
misc_feature complement(339445..339978)
/locus_tag="NMB0331"
/note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis; Region: DPCK; cd02022"
/db_xref="CDD:238980"
misc_feature complement(order(339508..339510,339646..339651,
339724..339726,339892..339894,339967..339969))
/locus_tag="NMB0331"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:238980"
misc_feature complement(order(339460..339462,339565..339567,
339946..339951,339958..339966))
/locus_tag="NMB0331"
/note="ATP-binding [chemical binding]; other site"
/db_xref="CDD:238980"
gene complement(339992..340852)
/gene="pilD"
/locus_tag="NMB0332"
/db_xref="GeneID:902447"
CDS complement(339992..340852)
/gene="pilD"
/locus_tag="NMB0332"
/EC_number="3.4.99.-"
/note="identified by similarity to EGAD:40757; match to
protein family HMM PF01478; match to protein family HMM
PF06750"
/codon_start=1
/transl_table=11
/product="type IV prepilin peptidase"
/protein_id="NP_273381.1"
/db_xref="GI:15676247"
/db_xref="GeneID:902447"
/translation="MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVF
AKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAWQNIPIVSYLLLRGKCASCQTKI
SIRYPLIELLTGVLFGLVAWQYGWSWITLGGLVLTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWLLCAVYKLLTGKTGMGNGDFKLIAAL
GAWLGISALPVLIFVSSLIGLVAAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRA
VNWWLTHPVL"
misc_feature complement(340007..340804)
/gene="pilD"
/locus_tag="NMB0332"
/note="Type II secretory pathway, prepilin signal
peptidase PulO and related peptidases [Cell motility and
secretion / Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion]; Region: PulO; COG1989"
/db_xref="CDD:224900"
misc_feature complement(340475..340804)
/gene="pilD"
/locus_tag="NMB0332"
/note="Bacterial Peptidase A24 N-terminal domain; Region:
DiS_P_DiS; pfam06750"
/db_xref="CDD:203513"
misc_feature complement(340124..340453)
/gene="pilD"
/locus_tag="NMB0332"
/note="Type IV leader peptidase family; Region:
Peptidase_A24; pfam01478"
/db_xref="CDD:216522"
gene complement(340926..342158)
/gene="pilG"
/locus_tag="NMB0333"
/db_xref="GeneID:902448"
CDS complement(340926..342158)
/gene="pilG"
/locus_tag="NMB0333"
/note="identified by similarity to EGAD:40687; match to
protein family HMM PF00482"
/codon_start=1
/transl_table=11
/product="pilus assembly protein PilG"
/protein_id="NP_273382.1"
/db_xref="GI:15676248"
/db_xref="GeneID:902448"
/translation="MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARK
KLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGN
PSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTV
MDMSDFFVSYGWMVLIALGFAIYGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTI
ARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRVIQGLSMTSGMRATE
LFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIG
TLLVAMYLPLFNLGNVVA"
misc_feature complement(340932..342116)
/gene="pilG"
/locus_tag="NMB0333"
/note="Type II secretory pathway, component PulF [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PulF; COG1459"
/db_xref="CDD:224376"
misc_feature complement(341565..341936)
/gene="pilG"
/locus_tag="NMB0333"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
misc_feature complement(340956..341318)
/gene="pilG"
/locus_tag="NMB0333"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
gene 342515..344158
/gene="pgi"
/locus_tag="NMB0334"
/db_xref="GeneID:902449"
CDS 342515..344158
/gene="pgi"
/locus_tag="NMB0334"
/EC_number="5.3.1.9"
/note="functions in sugar metabolism in glycolysis and the
Embden-Meyerhof pathways (EMP) and in gluconeogenesis;
catalyzes reversible isomerization of glucose-6-phosphate
to fructose-6-phosphate; member of PGI family"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate isomerase"
/protein_id="NP_273383.1"
/db_xref="GI:15676249"
/db_xref="GeneID:902449"
/translation="MNAFTRAWYALERHYQDTRHVLLRDRFACEPDRFERMHERLDGM
LFDYSKNRLGEDTLQLLCNLADAADLEGKMRALRTGAKVNGSEGRAALHTALRLPDGA
DAVYVDGRDVLPEIRRELNRALKFAHSLDDGSYQGITGKRITDFVHIGIGGSDLGPAM
CVQALEPFRRHITVHFAANADPACLDAVLCRLNPETTVFCVASKSFKTPETLLNAQAV
KAWYRGAGFSESETACHFCAVSADTAAAAAFGIAAERVFAMYDWVGGRYSVWSPVGLP
VMVAVGGARFRELLAGAHAMDRHFFSTPTRHNIPVLMALIAVWYNNFQHADGQTAVPY
SHNLRLLPAWLNQLDMESLGKSRASDGSPAVCKTGGIVFGGEGVNCQHAYFQLLHQGT
RLIPCDFIVPMTAQGREDGRSRFTVANAFAQAEALMKGKTLDEARAELADLPEAERER
LAPHKEFPGNRPSNSILIDRLTPYNLGMLMAAYEHKTFVQGAIWNVNPFDQWGVEYGK
QLAKTIIGELEGGTSVHDASTEGLMAFYRECRLKGGGAA"
misc_feature 342524..344134
/gene="pgi"
/locus_tag="NMB0334"
/note="glucose-6-phosphate isomerase; Reviewed; Region:
pgi; PRK00179"
/db_xref="CDD:234679"
misc_feature 342863..343354
/gene="pgi"
/locus_tag="NMB0334"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_1; cd05015"
/db_xref="CDD:240146"
misc_feature order(342965..342967,342971..342976,343121..343129,
343136..343138,343307..343309)
/gene="pgi"
/locus_tag="NMB0334"
/note="active site"
/db_xref="CDD:240146"
misc_feature order(343046..343057,343142..343144,343154..343156,
343163..343165)
/gene="pgi"
/locus_tag="NMB0334"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240146"
misc_feature 343508..344056
/gene="pgi"
/locus_tag="NMB0334"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_2; cd05016"
/db_xref="CDD:240147"
misc_feature order(343517..343519,343553..343555,343565..343567,
343574..343579,343637..343639,343643..343651,
343658..343663,343670..343675,343682..343684,
343754..343756,343778..343780,343787..343789)
/gene="pgi"
/locus_tag="NMB0334"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240147"
misc_feature order(343553..343555,343565..343567)
/gene="pgi"
/locus_tag="NMB0334"
/note="active site"
/db_xref="CDD:240147"
gene 344368..345189
/gene="dapD"
/locus_tag="NMB0335"
/db_xref="GeneID:902450"
CDS 344368..345189
/gene="dapD"
/locus_tag="NMB0335"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="NP_273384.1"
/db_xref="GI:15676250"
/db_xref="GeneID:902450"
/translation="MSLQNIIETAFENRADITPTTVTPEVKEAVLETIRQLDSGKLRV
AERLGVGEWKVNEWAKKAVLLSFRIQDNEVLNDGVNKYFDKVPTKFADWSEDEFKNAG
FRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAAPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRT
TGEIYQGRVPAGSVVVSGSMPSKDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI"
misc_feature 344368..345180
/gene="dapD"
/locus_tag="NMB0335"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:236996"
misc_feature 344671..345084
/gene="dapD"
/locus_tag="NMB0335"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature order(344677..344682,344689..344694,344740..344742,
344746..344748,344794..344802,344848..344850,
344926..344928,344932..344934,344986..344988,
345067..345078,345082..345084)
/gene="dapD"
/locus_tag="NMB0335"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature order(344677..344679,344701..344703,344737..344739,
344752..344754,344788..344790,344809..344811,
344836..344838,344842..344844,344863..344865,
344869..344874,344881..344883,344920..344928,
344941..344943,344974..344979)
/gene="dapD"
/locus_tag="NMB0335"
/note="active site"
/db_xref="CDD:100041"
misc_feature order(344677..344679,344701..344703,344737..344739,
344752..344754,344788..344790,344809..344811,
344869..344871)
/gene="dapD"
/locus_tag="NMB0335"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature order(344842..344847,344863..344865,344881..344883,
344920..344928,344941..344943,344974..344979)
/gene="dapD"
/locus_tag="NMB0335"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene 345344..346129
/gene="fabI"
/locus_tag="NMB0336"
/db_xref="GeneID:902451"
CDS 345344..346129
/gene="fabI"
/locus_tag="NMB0336"
/EC_number="1.3.1.10"
/note="Catalyzes a key regulatory step in fatty acid
biosynthesis"
/codon_start=1
/transl_table=11
/product="enoyl-(acyl carrier protein) reductase"
/protein_id="NP_273385.1"
/db_xref="GI:15676251"
/db_xref="GeneID:902451"
/translation="MGFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKL
EERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSG
DFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVM
GMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLR
RNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYSINALSTEG"
misc_feature 345344..346126
/gene="fabI"
/locus_tag="NMB0336"
/note="enoyl-(acyl carrier protein) reductase;
Provisional; Region: PRK08690"
/db_xref="CDD:169553"
misc_feature 345359..346111
/gene="fabI"
/locus_tag="NMB0336"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature order(345380..345388,345398..345403,345461..345463,
345530..345538,345614..345625,345698..345700,
345776..345784,345812..345814,345833..345835,
345911..345922,345926..345937)
/gene="fabI"
/locus_tag="NMB0336"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature order(345431..345433,345536..345547,345554..345556,
345650..345661,345665..345673,345680..345685,
345692..345697,345704..345709,345716..345718,
345728..345730,345737..345739,345788..345793,
345797..345808,345812..345817,345824..345829,
345836..345841,345848..345853,345857..345874,
345878..345883,345962..345964,345971..345973,
345989..346000,346016..346018,346025..346030,
346037..346039,346052..346054,346058..346096,
346100..346111)
/gene="fabI"
/locus_tag="NMB0336"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(345536..345547,345650..345661,345665..345673,
345680..345685,345692..345697,345704..345709,
345716..345718,345725..345730,345737..345739,
345788..345793,345797..345805,345812..345817,
345824..345829,345836..345841,345848..345853,
345857..345865,345869..345877)
/gene="fabI"
/locus_tag="NMB0336"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(345620..345622,345626..345628,345782..345784,
345812..345814,345821..345823,345833..345835,
345932..345937,345944..345946,345953..345955)
/gene="fabI"
/locus_tag="NMB0336"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(345701..345703,345782..345784,345821..345823,
345833..345835)
/gene="fabI"
/locus_tag="NMB0336"
/note="active site"
/db_xref="CDD:187630"
gene complement(346373..347371)
/locus_tag="NMB0337"
/db_xref="GeneID:902452"
CDS complement(346373..347371)
/locus_tag="NMB0337"
/EC_number="2.6.1.42"
/note="catalyzes the transamination of the branched-chain
amino acids to their respective alpha-keto acids"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid aminotransferase"
/protein_id="NP_273386.1"
/db_xref="GI:15676252"
/db_xref="GeneID:902452"
/translation="MSRPVPAVFGSVFHSQMPVLAYREGKWQPTEWQSSQDLSLAPGA
HALHYGSECFEGLKAFRQADGKIVLFRPTANIARMRQSADILHLPRPETEAYLDALIK
LVKRAADEIPDAPAALYLRPTLIGTDPVIGKAGSPSETALLYILASPVGDYFKVGSPV
KILVETEHIRCAPHMGRVKCGGNYASAMHWVLKAKAEYGANQVLFCPNGDVQETGASN
FILINGDEIITKPLTDEFLHGVTRDSVLTVAKDLGYTVSERNFTVDELKAAVENGAEA
ILTGTAAVISPVTSFVIGGKEIEVKSQERGYAIRKAITDIQYGLAEDKYGWLVEVC"
misc_feature complement(346376..347347)
/locus_tag="NMB0337"
/note="branched-chain amino acid aminotransferase;
Provisional; Region: PRK13357"
/db_xref="CDD:237363"
misc_feature complement(346415..347257)
/locus_tag="NMB0337"
/note="BCAT_beta_family: Branched-chain aminotransferase
catalyses the transamination of the branched-chain amino
acids leusine, isoleucine and valine to their respective
alpha-keto acids, alpha-ketoisocaproate,
alpha-keto-beta-methylvalerate and...; Region:
BCAT_beta_family; cd01557"
/db_xref="CDD:238798"
misc_feature complement(order(346793..346795,346805..346807,
346811..346813,346829..346831,346940..346942,
346961..346963,346979..346987,347003..347005,
347009..347011,347117..347119,347210..347212,
347216..347218,347222..347236,347243..347257))
/locus_tag="NMB0337"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238798"
misc_feature complement(order(346529..346531,346649..346654,
346733..346735,346820..346822,346835..346837,
346973..346975,347138..347140,347210..347212,
347225..347227))
/locus_tag="NMB0337"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:238798"
misc_feature complement(346835..346837)
/locus_tag="NMB0337"
/note="catalytic residue [active]"
/db_xref="CDD:238798"
gene 347513..347995
/locus_tag="NMB0338"
/db_xref="GeneID:902453"
CDS 347513..347995
/locus_tag="NMB0338"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273387.1"
/db_xref="GI:15676253"
/db_xref="GeneID:902453"
/translation="MERNGVFGKIVGNRILRMSSEHAAASYPKPCKSFKLAQSWFRVR
SCLGGVFIYGANMKLIYTVIKIIILLLFLLLAVINTDAVTFSYLPGQKFDLPLIVVLF
GAFVVGIIFGMFALFGRLLSLRGENGRLRAEVKKNARLTGKELTAPPAQNAPESTKQP
"
misc_feature 347624..347914
/locus_tag="NMB0338"
/note="Uncharacterized integral membrane protein [Function
unknown]; Region: COG5416"
/db_xref="CDD:227703"
gene 348006..349175
/locus_tag="NMB0339"
/db_xref="GeneID:902454"
CDS 348006..349175
/locus_tag="NMB0339"
/note="identified by similarity to EGAD:28234"
/codon_start=1
/transl_table=11
/product="tetratricopeptide repeat protein"
/protein_id="NP_273388.1"
/db_xref="GI:15676254"
/db_xref="GeneID:902454"
/translation="MDNELWIILLPIILLPVFFAMGWFAARVDMKTVLKQAKSIPSGF
YKSLDALVDRNSGRAARELAEVVDGRPQSYDLNLTLGKLYRQRGENDKAINIHRTMLD
SPDTVGEKRARVLFELAQNYQSAGLVDRAEQIFLGLQDGKMAREARQHLLNIYQQDRD
WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALEANKKCTR
ANMILGDIEHRQGNFPAAVEAYAAIEQQNHAYLSMVGEKLYEAYAAQGKPEEGLNRLT
GYMQTFPELDLINVVYEKSLLLKCEKEAAQTAVELVRRKPDLNGVYRLLGLKLSDMNP
AWKADADMMRSVIGRQLQRSVMYRCRNCHFKSQVFFWHCPACNKWQTFTPNKIEV"
misc_feature 348054..349172
/locus_tag="NMB0339"
/note="Predicted N-acetylglucosaminyl transferase
[Carbohydrate transport and metabolism]; Region: COG2956"
/db_xref="CDD:225504"
misc_feature 348456..348725
/locus_tag="NMB0339"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(348459..348461,348495..348497,348513..348515,
348573..348575,348609..348611,348621..348623,
348630..348632,348675..348677,348711..348713,
348723..348725)
/locus_tag="NMB0339"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature order(348462..348467,348564..348569,348573..348578,
348585..348590,348666..348671,348678..348683,
348690..348695)
/locus_tag="NMB0339"
/note="binding surface"
/db_xref="CDD:238112"
gene 349200..349616
/gene="gloA"
/locus_tag="NMB0340"
/db_xref="GeneID:902455"
CDS 349200..349616
/gene="gloA"
/locus_tag="NMB0340"
/EC_number="4.4.1.5"
/note="identified by similarity to EGAD:134180; match to
protein family HMM PF00903; match to protein family HMM
TIGR00068"
/codon_start=1
/transl_table=11
/product="lactoylglutathione lyase"
/protein_id="NP_273389.1"
/db_xref="GI:15676255"
/db_xref="GeneID:902455"
/translation="MRLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFV
GYGDETDSTVLELTHNWDTERYDLGNAYGHIAVEVDDAYEACERVKRQGGNVVREAGP
MKHGTTVIAFVEDPDGYKIEFIQKKSGDDSVAYQTA"
misc_feature 349203..349568
/gene="gloA"
/locus_tag="NMB0340"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:216182"
misc_feature 349206..349571
/gene="gloA"
/locus_tag="NMB0340"
/note="Glyoxalase I catalyzes the isomerization of the
hemithioacetal, formed by a 2-oxoaldehyde and glutathione,
to S-D-lactoylglutathione; Region: Glyoxalase_I; cd07233"
/db_xref="CDD:176659"
misc_feature order(349206..349220,349224..349226,349236..349241,
349248..349253,349260..349265,349272..349274,
349281..349283,349290..349295,349323..349325,
349335..349337,349356..349358,349362..349367,
349377..349382,349410..349439,349461..349463,
349554..349556,349563..349565)
/gene="gloA"
/locus_tag="NMB0340"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176659"
misc_feature order(349212..349214,349224..349226,349299..349301,
349314..349316,349320..349322,349365..349367,
349371..349373,349377..349379,349419..349421,
349491..349493,349527..349529,349533..349535,
349557..349559,349563..349565)
/gene="gloA"
/locus_tag="NMB0340"
/note="active site"
/db_xref="CDD:176659"
misc_feature order(349212..349214,349365..349367,349419..349421,
349563..349565)
/gene="gloA"
/locus_tag="NMB0340"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:176659"
misc_feature order(349224..349226,349299..349301,349314..349316,
349320..349322,349371..349373,349377..349379,
349491..349493,349527..349529,349533..349535,
349557..349559)
/gene="gloA"
/locus_tag="NMB0340"
/note="glutathione binding site [chemical binding]; other
site"
/db_xref="CDD:176659"
gene complement(349788..352415)
/locus_tag="NMB0341"
/db_xref="GeneID:902456"
CDS complement(349788..352415)
/locus_tag="NMB0341"
/note="identified by similarity to GP:3413497; match to
protein family HMM PF01476"
/codon_start=1
/transl_table=11
/product="tspA protein"
/protein_id="NP_273390.1"
/db_xref="GI:15676256"
/db_xref="GeneID:902456"
/translation="MPAGRLPRRCPMMTKFTDCTRSNRIQPPTHRGYILKNNRQIKLI
AASVAVAASFQAHAGLGGLNIQSNLDEPFSGSITVTGEEAKALLGGGSVTVSEKGLTA
KVHKLGDKAVIAVSSEQAVRDPVLVFRIGAGAQVREYTAILDPVGYSPKTKSALSDGK
THRKTAPTAESQENQNAKALRKTDKKDSANAAVKPAYNGKTHTVRKGETVKQIAAAIR
PKHLTLEQVADALLKANPNVSAHGRLRAGSVLHIPNLNRIKAEQPKPQTAKPKAETAS
MPSEPSKQATVEKPVEKPEAKVAAPEAKAEKPAVRPEPVPAANTAASETAAESAPQEA
AASAIDTPTDETGNAVSEPVEQVSAEEETESGLFDGLFGGSYTLLLAGGGAALIALLL
LLRLAQSKRARRTEESVPEEEPDLDDAADDGIEITFAEVETPATPEPAPKNDVNDTLA
LDGESEEELSAKQTFDVETDTPSNRIDLDFDSLAAAQNGILSGALTQDEETQKRADAD
WNAIESTDSVYEPETFNPYNPVEIVIDTPEPESVAQTAENKPETVDTDFSDNLPSNNH
IGTEETASAKPASPSGLAGFLKASSPETILEKTVAEVQTPEELHDFLKVYETDAVAET
APETPDFNAAADDLSALLQPAEAPSVEENITETVAETPDFNATADDLSALLQPSKVPA
VEENAAETVADDLSALLQPAEAPAVEENVTETVAETPDFNATADDLSALLQPSEAPAV
EENAAETVADDLSALLQPAEAPAVEENAAEITLETPDSNTSEADALPDFLKDGEEETV
DWSIYLSEENIPNNADTSFPSESVGSDAPSEAKYDLAEMYLEIGDRDAAAETVQKLLE
EAEGDVLKRAQALAQELGI"
misc_feature complement(349794..352409)
/locus_tag="NMB0341"
/note="Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion];
Region: FimV; COG3170"
/db_xref="CDD:225711"
misc_feature complement(351660..351818)
/locus_tag="NMB0341"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(349797..349928)
/locus_tag="NMB0341"
/note="FimV C-terminal domain; Region: FimV_Cterm;
TIGR03504"
/db_xref="CDD:200281"
gene 352621..353151
/gene="ispZ"
/locus_tag="NMB0342"
/db_xref="GeneID:902457"
CDS 352621..353151
/gene="ispZ"
/locus_tag="NMB0342"
/note="Involved in cell division; probably involved in
intracellular septation"
/codon_start=1
/transl_table=11
/product="intracellular septation protein A"
/protein_id="NP_273391.1"
/db_xref="GI:15676257"
/db_xref="GeneID:902457"
/translation="MKFVSDLLSVILFFATYTVTKNMIAATAVALVAGVVQAAFLYWK
YKKLDTMQWVGLVLIVVFGGATIVLGDSRFIMWKPSVLFWLGALFLWGSHLAGKNGLK
ASIGREIQLPDAVWAKLTYMWVGFLIFMGIANWFVFTRFESQWVNYKMFGSTALMLVF
FIIQGIYLSTCLKKED"
misc_feature 352621..353148
/gene="ispZ"
/locus_tag="NMB0342"
/note="intracellular septation protein A; Reviewed;
Region: PRK00259"
/db_xref="CDD:234704"
gene 353166..353444
/locus_tag="NMB0343"
/db_xref="GeneID:902458"
CDS 353166..353444
/locus_tag="NMB0343"
/note="unknown function; YciI from Haemophilus influenzae
presents crystal structure similarity to a muconolactone
isomerase, but does not seem to catalyze any of the
predicted reactions based on sequence and structure
similarity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273392.1"
/db_xref="GI:15676258"
/db_xref="GeneID:902458"
/translation="MLLATDGEDVHEARMAARPEHLKRLETLKSEGRLLTAGPNPLPE
DSNRVSGSLIVAQFESLDAAQAWAEDDPYVHAGVYSEVLIKPFKAVFK"
misc_feature 353166..353438
/locus_tag="NMB0343"
/note="YciI-like protein; Reviewed; Region: PRK11370"
/db_xref="CDD:183103"
gene 353444..353722
/locus_tag="NMB0344"
/db_xref="GeneID:902459"
CDS 353444..353722
/locus_tag="NMB0344"
/note="identified by similarity to EGAD:21163; match to
protein family HMM PF01722"
/codon_start=1
/transl_table=11
/product="BolA/YrbA family protein"
/protein_id="NP_273393.1"
/db_xref="GI:15676259"
/db_xref="GeneID:902459"
/translation="MPAVDLIRERLQTLDPLVLEIGDESHLHKGHAGNTGGGHYAVLV
VSGRFEGVSRLNRQKTVKSLLKDLFSGGMIHALGIRAATPDEYFHTAD"
misc_feature 353462..353713
/locus_tag="NMB0344"
/note="Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms]; Region: BolA; COG0271"
/db_xref="CDD:223349"
gene 353771..354637
/locus_tag="NMB0345"
/db_xref="GeneID:902460"
CDS 353771..354637
/locus_tag="NMB0345"
/note="identified by similarity to EGAD:12394"
/codon_start=1
/transl_table=11
/product="cell-binding factor"
/protein_id="NP_273394.1"
/db_xref="GI:15676260"
/db_xref="GeneID:902460"
/translation="MKAKILTSVALLACSGSLFAQTLATVNGQKIDSSVIDAQVAAFR
AENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDD
KKPSFKTVWQAVKYGLNGEAYALHIAKTQPVSEQEVKAAYDNISGFYKGTQEVQLGEI
LTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLEQGVPPLYQ
AIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAERIDRAVG
ALLGKANIKPAK"
misc_feature 354167..354547
/locus_tag="NMB0345"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:221934"
gene 354708..355466
/locus_tag="NMB0346"
/db_xref="GeneID:902461"
CDS 354708..355466
/locus_tag="NMB0346"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273395.1"
/db_xref="GI:15676261"
/db_xref="GeneID:902461"
/translation="MKQKKTAAAVIAAMLAGFAAAKAPEIDPALVDTLVAQIMQQADR
HAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLDKDKDVQNRFKIAEASFYAEEY
VRFLERSETVSEDELHKFYEQQIRMIKLQQVSFATEEEARQAQQLLLKGLSFEGLMKR
YPNDEQAFDGFIMAQQLPEPLASQFAAMNRGDVTRDPVKLGERYYLFKLSEVGKNPDA
QPFELVRNQLEQGLRQEKARLKIDALLEENGVKP"
misc_feature 354780..355460
/locus_tag="NMB0346"
/note="Parvulin-like peptidyl-prolyl isomerase
[Posttranslational modification, protein turnover,
chaperones]; Region: SurA; COG0760"
/db_xref="CDD:223831"
misc_feature 355041..355385
/locus_tag="NMB0346"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:221934"
gene 355539..356030
/locus_tag="NMB0347"
/db_xref="GeneID:902462"
CDS 355539..356030
/locus_tag="NMB0347"
/note="hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and
free tRNA(Tyr); possible defense mechanism against a
harmful effect of D-tyrosine"
/codon_start=1
/transl_table=11
/product="D-tyrosyl-tRNA(Tyr) deacylase"
/protein_id="NP_273396.1"
/db_xref="GI:15676262"
/db_xref="GeneID:902462"
/translation="MRAVIQKTVGAKVDVVSEAGTETCGKIDGGFVVLLGVTHSDTEK
DARYIADKIAHLRVFEDEAGKLNLSLKDVGGAVLLVSQFTLYADAASGRRPSFSQAAP
AEQAQQLYLRTAELLRGHGIHVETGRFRTHMQVSLCNDGPVTILLDSFMTRISPKMKV
VPD"
misc_feature 355539..355985
/locus_tag="NMB0347"
/note="D-Tyrosyl-tRNAtyr deacylases; a class of
tRNA-dependent hydrolases which are capable of hydrolyzing
the ester bond of D-Tyrosyl-tRNA reducing the level of
cellular D-Tyrosine while recycling the peptidyl-tRNA;
found in bacteria and in eukaryotes but not...; Region:
Dtyr_deacylase; cd00563"
/db_xref="CDD:238316"
misc_feature order(355557..355559,355779..355793,355827..355829,
355971..355973)
/locus_tag="NMB0347"
/note="putative active site [active]"
/db_xref="CDD:238316"
misc_feature order(355680..355682,355689..355697,355701..355712,
355779..355784,355788..355793,355797..355805,
355809..355823,355827..355829,355929..355982)
/locus_tag="NMB0347"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238316"
misc_feature order(355692..355694,355707..355709,355809..355811,
355818..355820)
/locus_tag="NMB0347"
/note="putative tRNAtyr binding site [nucleotide binding];
other site"
/db_xref="CDD:238316"
gene 356061..357071
/locus_tag="NMB0348"
/db_xref="GeneID:902463"
CDS 356061..357071
/locus_tag="NMB0348"
/note="identified by similarity to EGAD:6786; match to
protein family HMM PF01207; match to protein family HMM
TIGR00742"
/codon_start=1
/transl_table=11
/product="tRNA-dihydrouridine synthase A"
/protein_id="NP_273397.1"
/db_xref="GI:15676263"
/db_xref="GeneID:902463"
/translation="MNDNTHTLPPRHLSVAPMLDWTDRHYRYLARQITRNTWLYSEMV
NAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPS
PRVQKGSFGACLMNEVGLVADCLNAMQDAVKIPVTVKHRIGVDRQTEYQTVADFVGTL
RDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTN
EAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI
QAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLKDNDGSLILEAWKEVERANM
RE"
misc_feature 356061..357068
/locus_tag="NMB0348"
/note="tRNA-dihydrouridine synthase A; Provisional;
Region: PRK11815"
/db_xref="CDD:236991"
misc_feature 356097..356816
/locus_tag="NMB0348"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:239200"
misc_feature order(356106..356114,356187..356189,356268..356270,
356349..356351,356475..356477,356574..356576,
356694..356696,356700..356702,356760..356765)
/locus_tag="NMB0348"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239200"
misc_feature order(356268..356270,356358..356363,356475..356477,
356481..356483,356571..356576,356580..356585,
356697..356702,356763..356765)
/locus_tag="NMB0348"
/note="active site"
/db_xref="CDD:239200"
misc_feature order(356358..356360,356481..356483,356574..356576,
356580..356582)
/locus_tag="NMB0348"
/note="catalytic residues [active]"
/db_xref="CDD:239200"
misc_feature order(356361..356363,356475..356477,356571..356573,
356583..356585,356697..356702)
/locus_tag="NMB0348"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239200"
gene complement(357141..358028)
/locus_tag="NMB0349"
/db_xref="GeneID:902464"
CDS complement(357141..358028)
/locus_tag="NMB0349"
/note="this tRNA synthetase lacks the tRNA anticodon
interaction domain; instead this enzyme modifies tRNA(Asp)
with glutamate by esterifying glutamate to the
2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of
queosine generating a modified nucleoside at the first
anticodon position of tRNAAsp; the modified tRNA does not
bind elongation factor Tu"
/codon_start=1
/transl_table=11
/product="glutamyl-Q tRNA(Asp) synthetase"
/protein_id="NP_273398.1"
/db_xref="GI:15676264"
/db_xref="GeneID:902464"
/translation="MYTGRFAPSPTGLLHIGSLLTAVASYADARAHGGKWLIRMEDLD
PPREMPGAASHILHTLEAFGFEWDGEVAYQSRRYALYEETLCRLKTAGLVYPCHCSRK
DWQAGARRGADGFVYNGRCRHPGQRPALQGKQPAWRIRVPDRIIGFSDGIVGGYAQNL
ARDIGDFVLLRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLDVPT
PQYAHLPLLTNAQGQKWSKQTLAPALDLNRREQLLRQVFRYLKLPEAPETDRPAELLD
WAVAHWDMDKVPKHAVTAP"
misc_feature complement(<357144..358028)
/locus_tag="NMB0349"
/note="Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis]; Region:
GlnS; COG0008"
/db_xref="CDD:223087"
misc_feature complement(357204..358025)
/locus_tag="NMB0349"
/note="glutamyl-queuosine tRNA(Asp) synthetase; Region:
queuosine_YadB; TIGR03838"
/db_xref="CDD:234370"
misc_feature complement(357975..357986)
/locus_tag="NMB0349"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(357975..357986)
/locus_tag="NMB0349"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(order(357975..357977,357984..357986))
/locus_tag="NMB0349"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(357312..357323)
/locus_tag="NMB0349"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(357312..357323)
/locus_tag="NMB0349"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene complement(358316..358768)
/locus_tag="NMB0350"
/db_xref="GeneID:902465"
CDS complement(358316..358768)
/locus_tag="NMB0350"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273399.1"
/db_xref="GI:15676265"
/db_xref="GeneID:902465"
/translation="MAKAIEIISPNEIYSDLIFKDPVPPHTIEYKMINLELKAINLYD
CAFEDFVPEIKDNFCVGIDLDIGTDDSDAADIFSVRICSPKWILHNCFQNQRVKWGAG
MMIMNEFNHSVIKSEIEKILKECSKETWEKSLTYLLRFFSWEFEDYQC"
gene complement(358919..359974)
/gene="tal"
/locus_tag="NMB0351"
/db_xref="GeneID:902466"
CDS complement(358919..359974)
/gene="tal"
/locus_tag="NMB0351"
/EC_number="2.2.1.2"
/note="catalyzes the reversible formation of D-erythrose
4-phosphate and D-fructose 6-phosphate from sedoheptulose
7-phosphate and D-glyceraldehyde 3-phosphate"
/codon_start=1
/transl_table=11
/product="transaldolase"
/protein_id="NP_273400.1"
/db_xref="GI:15676266"
/db_xref="GeneID:902466"
/translation="MTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNP
AIFQKAFAGDALYADEIAALKQQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTG
FVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVN
LTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIQVVASFFISRVDGALDTTLPDHLK
GKIAIALAKAAYQDWAQYFGSPEFAALETKGANRVQLLWASTGVKNPAYPDTLYVDSL
IGAHTVNTVPDATLKAFIDHGTAKATLTEGVEEAQAQLAETAALGIDVETLATRLQED
GLKQFEEAFEKLLAPLA"
misc_feature complement(358940..359938)
/gene="tal"
/locus_tag="NMB0351"
/note="Transaldolase-like proteins from plants and
bacteria; Region: Transaldolase_like; cd00955"
/db_xref="CDD:188642"
misc_feature complement(order(359363..359365,359378..359380,
359489..359491,359495..359497,359561..359563,
359654..359656,359846..359848,359924..359926))
/gene="tal"
/locus_tag="NMB0351"
/note="putative active site [active]"
/db_xref="CDD:188642"
misc_feature complement(358925..359806)
/gene="tal"
/locus_tag="NMB0351"
/note="transaldolase; Provisional; Region: PRK03903"
/db_xref="CDD:235171"
misc_feature complement(359561..359563)
/gene="tal"
/locus_tag="NMB0351"
/note="catalytic residue [active]"
/db_xref="CDD:188642"
gene 360071..361045
/locus_tag="NMB0352"
/db_xref="GeneID:902467"
CDS 360071..361045
/locus_tag="NMB0352"
/note="identified by similarity to EGAD:29719; match to
protein family HMM PF00571; match to protein family HMM
PF01380; match to protein family HMM TIGR00393"
/codon_start=1
/transl_table=11
/product="KpsF/GutQ family sugar isomerase"
/protein_id="NP_273401.1"
/db_xref="GI:15676267"
/db_xref="GeneID:902467"
/translation="MAENGKYLDWAREVLHAEAEGLREIAAELDKNFVLAADALLHCK
GRVVITGMGKSGHIGRKMAATMASTGTPAFFVHPAEAAHGDLGMIVDNDVVVAISNSG
ESDEIAAIIPALKRKDITLVCITARPDSTMARHADIHITASVSKEACPLGLAPTTSTT
AVMALGDALAVVLLRARAFTPDDFALSHPAGSLGKRLLLRVADIMHKGGGLPAVRLGT
PLKEAIVSMSEKGLGMLAVTDGQGRLKGVFTDGDLRRLFQECDNFTGLSIDEVMHTHP
KTISAERLATEALKVMQANHVNGLLVTDADGVLIGALNMHDLLAARIV"
misc_feature 360101..361042
/locus_tag="NMB0352"
/note="D-arabinose 5-phosphate isomerase; Provisional;
Region: PRK10892"
/db_xref="CDD:182814"
misc_feature 360203..360550
/locus_tag="NMB0352"
/note="KpsF-like protein. KpsF is an arabinose-5-phosphate
isomerase which contains SIS (Sugar ISomerase) domains.
SIS domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. KpsF catalyzes the
reversible reaction of ribulose...; Region: SIS_Kpsf;
cd05014"
/db_xref="CDD:240145"
misc_feature order(360233..360235,360365..360367)
/locus_tag="NMB0352"
/note="putative active site [active]"
/db_xref="CDD:240145"
misc_feature 360692..361033
/locus_tag="NMB0352"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with KpsF/GutQ domains in the API [A5P (D-arabinose
5-phosphate) isomerase] protein. These APIs catalyze the
conversion of the pentose pathway...; Region:
CBS_pair_KpsF_GutQ_assoc; cd04604"
/db_xref="CDD:239977"
gene 361263..361799
/locus_tag="NMB0353"
/db_xref="GeneID:902468"
CDS 361263..361799
/locus_tag="NMB0353"
/note="identified by similarity to EGAD:155354; match to
protein family HMM TIGR01662; match to protein family HMM
TIGR01670"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273402.1"
/db_xref="GI:15676268"
/db_xref="GeneID:902468"
/translation="MQAISPELQARAAKIKLLILDVDGVLTDGRIFIRDNGEEIKSFH
TLDGHGLKMLQASGVQTAIITGRDAPSVGIRVKQLGINYYFKGISDKRAAYEELRAQA
GVEEAECAFVGDDVVDLPVMVRCGLPVAVPGAHWFTRQHAAYITEHAGGAGAVREVCD
LIMQAQGTLGAALNEYIK"
misc_feature 361308..361655
/locus_tag="NMB0353"
/note="HAD-superfamily hydrolase, subfamily IIIA; Region:
HAD-SF-IIIA; TIGR01662"
/db_xref="CDD:233517"
misc_feature 361311..361655
/locus_tag="NMB0353"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature order(361323..361331,361455..361460)
/locus_tag="NMB0353"
/note="active site"
/db_xref="CDD:119389"
misc_feature 361323..361340
/locus_tag="NMB0353"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 361455..361457
/locus_tag="NMB0353"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 361796..362377
/locus_tag="NMB0354"
/db_xref="GeneID:902469"
CDS 361796..362377
/locus_tag="NMB0354"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273403.1"
/db_xref="GI:15676269"
/db_xref="GeneID:902469"
/translation="MKVRWRYGIAFPLILAVALGSLSAWLGRISEVEIEEVRLNPDEP
QYTMDGLDGRRFDEQGYLKEHLSAKGAKQFPESSDIHFDSPHLVFFQEGRLLYEVGSD
EAVYHTENKQVLFKNNVVLTKTADGKRQAGKVEAEKLHVDTESQYAQTDTPVSFQYGA
SHGQAGGMTYDHKTGMLNFSSKVKATIYDTKDM"
misc_feature 361796..362374
/locus_tag="NMB0354"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3117"
/db_xref="CDD:225659"
misc_feature 361862..362356
/locus_tag="NMB0354"
/note="Lipopolysaccharide-assembly, LptC-related; Region:
LptC; pfam06835"
/db_xref="CDD:219198"
gene 362358..362888
/locus_tag="NMB0355"
/db_xref="GeneID:902470"
CDS 362358..362888
/locus_tag="NMB0355"
/note="identified by similarity to EGAD:28154; match to
protein family HMM PF03968"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273404.1"
/db_xref="GI:15676270"
/db_xref="GeneID:902470"
/translation="MIQKICKLFVLIAFFSASPAFALQSDSRQPIQIEADQGSLDQAN
QSTTFSGNVVIRQGTLNISAARVNVTRGGKGGESVRAEGSPVRFSQTLDGGKGTVRGQ
ANNVAYSSAGSTVVLTGNAKVQRGGDVAEGAVITYNTKTEVYTISGSTKSGAKSASKS
GRVSVVIQPSSTQKSE"
misc_feature 362421..362792
/locus_tag="NMB0355"
/note="lipopolysaccharide transport periplasmic protein
LptA; Region: outer_YhbN_LptA; TIGR03002"
/db_xref="CDD:234083"
misc_feature 362451..362786
/locus_tag="NMB0355"
/note="OstA-like protein; Region: OstA; pfam03968"
/db_xref="CDD:217820"
gene 362932..363696
/locus_tag="NMB0356"
/db_xref="GeneID:902471"
CDS 362932..363696
/locus_tag="NMB0356"
/note="identified by similarity to EGAD:139998; match to
protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_273405.1"
/db_xref="GI:15676271"
/db_xref="GeneID:902471"
/translation="MPTEDIEEIFMSANVSRLVVQNLQKSFKKRQVVKSFSLEIESGE
VIGLLGPNGAGKTTSFYMIVGLIAADAGSVTLDGQELRHLPIHERARLGVGYLPQEAS
IFRKMTVEQNIRAILEIRTKDKNQIDREIEKLLADLNIGHLRRSPAPSLSGGERRRVE
IARVLAMKPHFILLDEPFAGVDPIAVIDIQKIIGFLKSRGIGVLITDHNVRETLSICD
RAYIISDGTVLASGKPDDLVGNEQVRSVYLGKNFKY"
misc_feature 362974..363693
/locus_tag="NMB0356"
/note="ABC-type (unclassified) transport system, ATPase
component [General function prediction only]; Region:
YhbG; COG1137"
/db_xref="CDD:224060"
misc_feature 362983..363678
/locus_tag="NMB0356"
/note="ATP-binding cassette component of YhbG transport
system; Region: ABC_YhbG; cd03218"
/db_xref="CDD:213185"
misc_feature 363079..363102
/locus_tag="NMB0356"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213185"
misc_feature order(363088..363093,363097..363105,363226..363228,
363454..363459,363553..363555)
/locus_tag="NMB0356"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213185"
misc_feature 363217..363228
/locus_tag="NMB0356"
/note="Q-loop/lid; other site"
/db_xref="CDD:213185"
misc_feature 363382..363411
/locus_tag="NMB0356"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213185"
misc_feature 363442..363459
/locus_tag="NMB0356"
/note="Walker B; other site"
/db_xref="CDD:213185"
misc_feature 363466..363477
/locus_tag="NMB0356"
/note="D-loop; other site"
/db_xref="CDD:213185"
misc_feature 363541..363561
/locus_tag="NMB0356"
/note="H-loop/switch region; other site"
/db_xref="CDD:213185"
gene 363887..363962
/gene="tRNA-Phe-1"
/locus_tag="NMBt16"
/db_xref="GeneID:902472"
tRNA 363887..363962
/gene="tRNA-Phe-1"
/locus_tag="NMBt16"
/product="tRNA-Phe"
/db_xref="GeneID:902472"
gene complement(364165..364866)
/gene="mtgA"
/locus_tag="NMB0357"
/db_xref="GeneID:902473"
CDS complement(364165..364866)
/gene="mtgA"
/locus_tag="NMB0357"
/EC_number="2.4.2.-"
/note="glycosyltransferase; polymerizes glycan strands in
the peptidoglycan"
/codon_start=1
/transl_table=11
/product="monofunctional biosynthetic peptidoglycan
transglycosylase"
/protein_id="NP_273406.1"
/db_xref="GI:15676272"
/db_xref="GeneID:902473"
/translation="MFRIIKWLIALPVGIFIFFNAYVYGNIITYRAVAPHRTAFMSMR
MKQFEQEGRDVALDYRWMPYKRISTNLKKALIASEDARFAGHGGFDWGGIQNAIRRNR
NSGKVKAGGSTISQQLAKNLFLNESRSYIRKGEEAAITAMMEAVTDKDRIFELYLNSI
EWHYGVFGAEAASRYFYQIPAAKLTKQQAAKLTARVPAPLYYADHPKSKRLRNKTNIV
LKRMGSAELPESDTD"
misc_feature complement(364180..364866)
/gene="mtgA"
/locus_tag="NMB0357"
/note="monofunctional biosynthetic peptidoglycan
transglycosylase; Provisional; Region: mtgA; PRK00056"
/db_xref="CDD:234603"
misc_feature complement(364183..364851)
/gene="mtgA"
/locus_tag="NMB0357"
/note="Transglycosylase; Region: Transgly; cl17702"
/db_xref="CDD:248256"
gene complement(364869..365678)
/gene="aroE"
/locus_tag="NMB0358"
/db_xref="GeneID:902474"
CDS complement(364869..365678)
/gene="aroE"
/locus_tag="NMB0358"
/EC_number="1.1.1.25"
/note="identified by similarity to EGAD:142367; match to
protein family HMM PF01488; match to protein family HMM
TIGR00507"
/codon_start=1
/transl_table=11
/product="shikimate dehydrogenase"
/protein_id="NP_273407.1"
/db_xref="GI:15676273"
/db_xref="GeneID:902474"
/translation="MTALPRYAVFGNPVAHSKSPQIHQQFALQEGVDIEYERICADIG
GFAQAVSTFFETGGCGANVTVPFKQEAFHLADEHSERALAAGAVNTLIPLKNGKLRGD
NTDGIGLTNDITQVKNIAIEGKTILLLGAGGAVRGVIPVLKEHRPARIVIANRTRAKA
EELAQLFGIEAVPMADVNGGFDIIINGTSGGLNGQIPDIPPDIFQNCALAYDMVYGCA
AKPFLDFARQSGAKKTADGLGMLVGQAAASYALWRGFTPDIRPVIEYMKAL"
misc_feature complement(364875..365678)
/gene="aroE"
/locus_tag="NMB0358"
/note="shikimate 5-dehydrogenase; Reviewed; Region: aroE;
PRK00258"
/db_xref="CDD:234703"
misc_feature complement(365406..365654)
/gene="aroE"
/locus_tag="NMB0358"
/note="Shikimate dehydrogenase substrate binding domain;
Region: Shikimate_dh_N; pfam08501"
/db_xref="CDD:149523"
misc_feature complement(364917..365369)
/gene="aroE"
/locus_tag="NMB0358"
/note="NAD(P) binding domain of Shikimate dehydrogenase;
Region: NAD_bind_Shikimate_DH; cd01065"
/db_xref="CDD:133443"
misc_feature complement(order(364947..364949,364956..364958,
365034..365036,365364..365366))
/gene="aroE"
/locus_tag="NMB0358"
/note="shikimate binding site; other site"
/db_xref="CDD:133443"
misc_feature complement(order(364956..364961,364968..364970,
365040..365042,365112..365120,365214..365219,
365277..365279,365286..365288))
/gene="aroE"
/locus_tag="NMB0358"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133443"
gene 365978..367396
/gene="glnA"
/locus_tag="NMB0359"
/db_xref="GeneID:902475"
CDS 365978..367396
/gene="glnA"
/locus_tag="NMB0359"
/EC_number="6.3.1.2"
/note="identified by similarity to EGAD:130497; match to
protein family HMM PF00120; match to protein family HMM
PF03951; match to protein family HMM TIGR00653"
/codon_start=1
/transl_table=11
/product="glutamine synthetase"
/protein_id="NP_273408.1"
/db_xref="GI:15676274"
/db_xref="GeneID:902475"
/translation="MSIKNAVKLIEESEARFVDLRFTDTKGKQHHFTVPARIVLEDPE
EWFENGQAFDGSSIGGWKGIQASDMQLRPDASTAFVDPFYDDATVVLTCDVIDPADGQ
GYDRDPRSIARRAEAYLKSSGIGETAYFGPEPEFFVFDGIEFETDMHKTRYEITSESG
AWASGLHMDGQNTGHRPTVKGGYAPVAPIDCGQDLRSAMVNILEELGIEVEVHHSEVG
TGSQMEIGTRFATLVKRADQTQDMKYVIQNVAHNFGKTATFMPKPIMGDNGSGMHVHQ
SIWKDGQNLFAGDGYAGLSDTALYYIGGIIKHAKALNAITNPSTNSYKRLVPHFEAPT
KLAYSAKNRSASIRIPSVNSSKARRIEARFPDPTANPYLAFAALLMAGLDGIQNKIHP
GDPADKNLYDLPPEEDALVPTVCASLEEALAALKADHEFLLRGGVFSKDWIDSYIAFK
EEDVRRIRMAPHPLEFEMYYSL"
misc_feature 365978..367393
/gene="glnA"
/locus_tag="NMB0359"
/note="glutamine synthetase; Provisional; Region: glnA;
PRK09469"
/db_xref="CDD:181884"
misc_feature 366017..366271
/gene="glnA"
/locus_tag="NMB0359"
/note="Glutamine synthetase, beta-Grasp domain; Region:
Gln-synt_N; pfam03951"
/db_xref="CDD:217811"
misc_feature 366290..367123
/gene="glnA"
/locus_tag="NMB0359"
/note="Glutamine synthetase, catalytic domain; Region:
Gln-synt_C; pfam00120"
/db_xref="CDD:215731"
gene 367552..368835
/locus_tag="NMB0360"
/db_xref="GeneID:902476"
CDS 367552..368835
/locus_tag="NMB0360"
/note="identified by similarity to EGAD:147104; match to
protein family HMM PF07690; match to protein family HMM
TIGR00901"
/codon_start=1
/transl_table=11
/product="AmpG-like protein"
/protein_id="NP_273409.1"
/db_xref="GI:15676275"
/db_xref="GeneID:902476"
/translation="MTASKSGFIGQIFSRNMLVCIFTGFTSGLPLYFLINLIPAWLRS
EQVDLKSIGLMALIGLPFTWKFLWSPLMDAVRLPVLGRRRGWMLLTQAGLLAALAVYA
FLNPRNHLPLIAGLSVLVAFFSASQDIVLDAFRREILSDEELGLGNSVHVNAYRIAAL
IPGSLSLVLADRMPWLEVFVITSLFMLPGLLMTLFLAREPVLPPAVPKTLKQTVVEPF
KEFFTRKGIASAVCVLLFIFLYKLGDSMATALATPFYLDMGFSKTDIGLIAKNAGLWP
AVAAGILGGVWMLKIGVNKALWLFGAVQAVTVLGFVWLAGFGPFDTVGTGERLMLAAV
IGAEAVGVGLGTAAFVSYMARETNPAFTATQLALFTSLSAVPRTVINSFAGYLIEWLG
YVPFFQLCFALALPGMLLLLKVAPWNGEKTQDAGR"
misc_feature 367621..368742
/locus_tag="NMB0360"
/note="muropeptide transporter; Reviewed; Region: ampG;
PRK11902"
/db_xref="CDD:183369"
misc_feature 367633..368676
/locus_tag="NMB0360"
/note="AmpG-like permease; Region: 2A0125; TIGR00901"
/db_xref="CDD:233177"
gene 368832..369107
/locus_tag="NMB0361"
/db_xref="GeneID:902477"
CDS 368832..369107
/locus_tag="NMB0361"
/note="identified by similarity to EGAD:147105; match to
protein family HMM PF01541"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273410.1"
/db_xref="GI:15676276"
/db_xref="GeneID:902477"
/translation="MNASNWSVYLILCENSAFYCGISPNPQQRLAAHTTGKGAKYTRV
FKPVAMRIVAGGMDKGTALRQEIAVKKLTAAQKRQLWEQAEKMPSET"
misc_feature 368847..369050
/locus_tag="NMB0361"
/note="The GIY-YIG domain of uncharacterized protein
family UPF0213 related to structure-specific endonuclease
SLX1; Region: GIY-YIG_UPF0213; cd10456"
/db_xref="CDD:198403"
misc_feature order(368850..368858,368886..368894)
/locus_tag="NMB0361"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198403"
misc_feature order(368856..368858,368886..368888,368892..368894,
368916..368918,368928..368930,369027..369029)
/locus_tag="NMB0361"
/note="putative active site [active]"
/db_xref="CDD:198403"
misc_feature 369027..369029
/locus_tag="NMB0361"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:198403"
gene 369213..369293
/locus_tag="NMB0362"
/db_xref="GeneID:902478"
CDS 369213..369293
/locus_tag="NMB0362"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273411.1"
/db_xref="GI:15676277"
/db_xref="GeneID:902478"
/translation="MKVKAYISIFYTPTEKNTMNCLLDLY"
gene 369618..369755
/locus_tag="NMB0363"
/db_xref="GeneID:902479"
CDS 369618..369755
/locus_tag="NMB0363"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273412.1"
/db_xref="GI:15676278"
/db_xref="GeneID:902479"
/translation="MKRLRAEIYADALSFPYILCVVKVQAALKSVLPSMNHHFVLFQR
A"
gene 370096..370869
/locus_tag="NMB0364"
/db_xref="GeneID:902480"
CDS 370096..370869
/locus_tag="NMB0364"
/note="identified by similarity to EGAD:20116; match to
protein family HMM PF06901"
/codon_start=1
/transl_table=11
/product="FrpC operon protein"
/protein_id="NP_273413.1"
/db_xref="GI:15676279"
/db_xref="GeneID:902480"
/translation="MRPYATTIYQLFILFIGSVFTMTSCEPVNEQTSFNNPEPMTGFE
HTVTFDFQGTKMVIPYGYLARYTQNNATKWLSDTPGQDAYSINLIEISVYYKKTDQGW
VLEPYNQQNKAHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERLLTYGVKKMPSAYPE
YEAYEDKRHIPENPYFHEFYYIKKGENPAIITHRNNRINQTEEDSYSTSVGSCINGFT
VRYYPFIREKQQLTQQELVGYHQQVEQLVQSFVNNSSKK"
misc_feature 370096..370866
/locus_tag="NMB0364"
/note="RTX iron-regulated protein FrpC; Region: FrpC;
pfam06901"
/db_xref="CDD:115551"
gene 370886..371161
/locus_tag="NMB0365"
/db_xref="GeneID:903203"
CDS 370886..371161
/locus_tag="NMB0365"
/note="identified by similarity to EGAD:18289"
/codon_start=1
/transl_table=11
/product="iron-regulated protein FrpC, truncation"
/protein_id="NP_273414.1"
/db_xref="GI:15677990"
/db_xref="GeneID:903203"
/translation="MNEGEVVLTPEQIQTLRGYASRGDTYGGWRYLANLGDRYADDAA
AIVGKDANLNGLNLWMKKGVENLWDDTVGKKTRLMCISVFWIVVFNL"
gene complement(371248..372381)
/locus_tag="NMB0366"
/db_xref="GeneID:902481"
CDS complement(371248..372381)
/locus_tag="NMB0366"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273415.1"
/db_xref="GI:15676280"
/db_xref="GeneID:902481"
/translation="MFKKFKPVLLSFFALVFAFWLGTGIAYEINPRWFLSDTATEVPK
NPNAFVAKLARLFRNADRAVVIVKESIRTEENLAGTVDDGPLQSEKDYLALAIRLSRL
KEKAKWFHVTEQEHGKEVWLDYHIGEGGLVAVSLSQRSPEAFVNAEYLYRNDRPFSVN
VYGGTVHGENYETTGEYRVVWQPDGSVFDAAGRGKIGEDVYEHCLGCYQMAQVYLAKY
RDVANDEQKVWDFRKESNRIASDSRNSVFYQNMRELMPRGMKANSLVVGYDADGLPQK
VYWSFDNGKKRQSFEYYLKNGNLFIAQSSTVALKADGVTADMQTYHAQQTWYLDGGRI
VREEKQGDRLPDFPLNLENLEKEVRRYAEAAARRSGGRRDLSH"
gene complement(372445..372831)
/locus_tag="NMB0367"
/db_xref="GeneID:902482"
CDS complement(372445..372831)
/locus_tag="NMB0367"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273416.1"
/db_xref="GI:15676281"
/db_xref="GeneID:902482"
/translation="MCIMCELKNFRRNITCFEGYDENSFIGKWYDDGVWDDEEYWKLE
NDLIEVRKKYPYPMDIPRYVVIGIGTIIDFLMVPNWKLFEIKASPWLPDSVGINERYE
RLKTMLRYIFTEKDIVNVQFDYYNKK"
gene complement(372900..373358)
/locus_tag="NMB0368"
/db_xref="GeneID:902483"
CDS complement(372900..373358)
/locus_tag="NMB0368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273417.1"
/db_xref="GI:15676282"
/db_xref="GeneID:902483"
/translation="MVDAVVKTPEFLPFTSVGIFRFGADITQYKNILETFMYEPPDEF
RTEYYESPDSNLLISVKKKNKIISIFCYQELYFMGVNIIGLNFEDFKQLFHYPKSYGV
DKYYLSNESYPTYVYEFDEIGVQAWEAKGKIVTIIAGGKDNYSTEPYYDE"
gene complement(373339..373728)
/locus_tag="NMB0369"
/db_xref="GeneID:902484"
CDS complement(373339..373728)
/locus_tag="NMB0369"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273418.1"
/db_xref="GI:15676283"
/db_xref="GeneID:902484"
/translation="MKAGSRLLSESGRTQTVRKTVVKPKPLKAYNLTVADWHTYFVKG
NQAETEGVWVHNSCPPKRTGSSKNEKHGDGGRSQISAESKIAELTNKIIPGMSKNERL
KIKQKIRNIAKNANRKTKGEEHGRRGR"
misc_feature complement(373558..>373728)
/locus_tag="NMB0369"
/note="Pretoxin HINT domain; Region: PT-HINT; pfam07591"
/db_xref="CDD:148935"
gene complement(373860..374237)
/locus_tag="NMB0370"
/db_xref="GeneID:902485"
CDS complement(373860..374237)
/locus_tag="NMB0370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273419.1"
/db_xref="GI:15676284"
/db_xref="GeneID:902485"
/translation="MCEFKDIIRNVPYFEGYDENSFIGKWYDDGVWDDEEYWKLENDL
IEVRKKYPYPMDIPRYVVIGIGTIIDFLMVPNWKLFEIKASPWLPDSVGIHERYERFT
TMLRYIFTEKDIVNVRFDYYNKK"
gene complement(374259..374666)
/locus_tag="NMB0371"
/db_xref="GeneID:902486"
CDS complement(374259..374666)
/locus_tag="NMB0371"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273420.1"
/db_xref="GI:15676285"
/db_xref="GeneID:902486"
/translation="MCEFKDFRRNIPCFKEYDENSFIGKWYDDGVWDDEEYWKLENDL
IEVRKKYPYPMDIPRDIVIGIGTIIDFLMVQNWKLFEIKASTWLPKSVKINERYERFR
VMLRYIFTDLDVEDWKFFYFPIQHSKGRLRRKV"
gene complement(374672..375349)
/locus_tag="NMB0372"
/db_xref="GeneID:902487"
CDS complement(374672..375349)
/locus_tag="NMB0372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273421.1"
/db_xref="GI:15676286"
/db_xref="GeneID:902487"
/translation="MVKTADGYKAIARIRTGDRVFAKDEASGKTGYKPVTARYGNPYQ
ETVYIEISDGIGNNQTLISNKIHPFYSQGKWIQAGRLKKGDTLLSESGAKQTVQNITL
KQQPLKAYNLTVADWHTYFVKGNRAETEGVWVHNDCPPRKTPSTPIYGNDSEAYAAAK
ELGYRKIKERTRNDAAIFKKGKSYISRDVDSHNGGAWKEASSPEKLNRKETRNGTFDK
NLNRIGD"
misc_feature complement(374939..375349)
/locus_tag="NMB0372"
/note="Pretoxin HINT domain; Region: PT-HINT; pfam07591"
/db_xref="CDD:148935"
misc_feature complement(374942..375331)
/locus_tag="NMB0372"
/note="Hedgehog/Intein domain, found in Hedgehog proteins
as well as proteins which contain inteins and undergo
protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In
protein splicing an intervening polypeptide sequence - the
intein - is excised from a protein; Region: Hint; cd00081"
/db_xref="CDD:238035"
misc_feature complement(order(375149..375151,375158..375160))
/locus_tag="NMB0372"
/note="thioester formation/cholesterol transfer; other
site"
/db_xref="CDD:238035"
misc_feature complement(order(374942..374947,375149..375151))
/locus_tag="NMB0372"
/note="protein-splicing catalytic site; other site"
/db_xref="CDD:238035"
gene complement(375564..375923)
/locus_tag="NMB0373"
/db_xref="GeneID:902488"
CDS complement(375564..375923)
/locus_tag="NMB0373"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273422.1"
/db_xref="GI:15676287"
/db_xref="GeneID:902488"
/translation="MASYVSIKGWIECSDDDIKIIQENINNFWNNCPFNIEEKESAKI
YKSGWVFPTNSFNWSSYIFFGACVKSYFIIYFEKCIKTIMELDIEISGFFELDYYEDN
YKVNWKINNGNLIQTTN"
gene complement(375926..377329)
/locus_tag="NMB0374"
/db_xref="GeneID:902489"
CDS complement(375926..377329)
/locus_tag="NMB0374"
/note="identified by similarity to GP:4838555; match to
protein family HMM PF06255"
/codon_start=1
/transl_table=11
/product="MafB-like protein"
/protein_id="NP_273423.1"
/db_xref="GI:15676288"
/db_xref="GeneID:902489"
/translation="MKPLRRLTNLLAACAVAAAALIQPALAADLAQDPFITDNAQRQH
YEPGGKYHLFGDPRGSVSDRTGKINVIQDYTHQMGNLLIQQANINGTIGYHTRFSGHG
HEEHAPFDNHAADSASEEKGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGA
RDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKL
DRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKF
AVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKVAKLAKAAKPGKA
AVSGDFADSYKKKLALSDSARQLYQNAKYREALDIHYEDLIRRKTDGSSKFINGREID
AVTNDALIQAKRTISAIDKPKNFLNQKNRKQIKATIEAANQQGKRAEFWFKYGVHSQV
KSYIESKGGIVKTGLGD"
misc_feature complement(376415..377233)
/locus_tag="NMB0374"
/note="Protein of unknown function (DUF1020); Region:
DUF1020; pfam06255"
/db_xref="CDD:191481"
gene complement(377333..378274)
/gene="mafA-1"
/locus_tag="NMB0375"
/db_xref="GeneID:902490"
CDS complement(377333..378274)
/gene="mafA-1"
/locus_tag="NMB0375"
/note="identified by similarity to GP:4838554"
/codon_start=1
/transl_table=11
/product="mafA protein"
/protein_id="NP_273424.1"
/db_xref="GI:15676289"
/db_xref="GeneID:902490"
/translation="MKTLLLLIPLVLTACGTLTGIPAHGGGKRFAVEQELVAASSRAA
VKEMDLSALKGRKAALYVSVMGDQGSGNISGGRYSIDALIRGGYHNNPESATQYSYPA
YDTTATTKSDALSSVTTSTSLLNAPAAALTKNSGRKGERSAGLSVNGTGDYRNETLLA
NPRDVSFLTNLIQTVFYLRGIEVVPPEYADTDVFVTVDVFGTVRSRTELHLYNAETLK
AQTKLEYFAVDRDSRKLLITPKTAAYESQYQEQYALWTGPYKVSKTVKASDRLMVDFS
DITPYGDTTAQNRPDFKQNNGKKPDVGNEVIRRRKGG"
gene complement(378271..378387)
/locus_tag="NMB0376"
/db_xref="GeneID:902491"
CDS complement(378271..378387)
/locus_tag="NMB0376"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273425.1"
/db_xref="GI:15676290"
/db_xref="GeneID:902491"
/translation="MPSESHFRRSDGIFAPFVYKPLKSLYTQNPFNIKQTPL"
gene complement(378394..379524)
/gene="anmK"
/locus_tag="NMB0377"
/gene_synonym="ydhH"
/db_xref="GeneID:902492"
CDS complement(378394..379524)
/gene="anmK"
/locus_tag="NMB0377"
/gene_synonym="ydhH"
/note="catalyzes hydrolysis of 1,6-anhydro bond of
anyhydro-N-acetylmuramic acid (anhMurNAc) and
phosphorylates anhMurNAc to produce
N-acetyl-muramate-6-phosphate; involved in murein
recycling"
/codon_start=1
/transl_table=11
/product="anhydro-N-acetylmuramic acid kinase"
/protein_id="NP_273426.1"
/db_xref="GI:15676291"
/db_xref="GeneID:902492"
/translation="MAFCTSLGVMMETQLYIGIMSGTSMDGADAVLIRMDGGKWLGAE
GHAFTPYPGRLRRQLLDLQDTGADELHRSRILSQELSRLYAQTAAELLCSQNLAPSDI
TALGCHGQTVRHAPEHGYSIQLADLPLLAERTRIFTVGDFRSRDLAAGGQGAPLVPAF
HEALFRDNRETRAVLNIGGIANISVLPPDAPAFGFDTGPGNMLMDAWTQAHWQLPYDK
NGAKAAQGNILPQLLDRLLAHPYFAQPHPKSTGRELFALNWLETYLDGGENRYDVLRT
LSRFTAQTVCDAVSHAAADARQMYICGGGIRNPVLMADLAECFGTRVSLHSTADLNLD
PQWVEAAAFAWLAACWINRIPGSPHKATGASKPCILGAGYYY"
misc_feature complement(378397..379485)
/gene="anmK"
/locus_tag="NMB0377"
/gene_synonym="ydhH"
/note="Uncharacterized protein family (UPF0075); Region:
UPF0075; pfam03702"
/db_xref="CDD:217680"
gene 379815..381389
/locus_tag="NMB0378"
/db_xref="GeneID:902493"
CDS 379815..381389
/locus_tag="NMB0378"
/note="identified by similarity to EGAD:160513; match to
protein family HMM PF01384"
/codon_start=1
/transl_table=11
/product="phosphate permease"
/protein_id="NP_273427.1"
/db_xref="GI:15676292"
/db_xref="GeneID:902493"
/translation="MAQIQMSANVKTINAVFAAMLVGTVGYFIYWGLGYTHYNYAALF
IIATMFGVFMAFNIGGNDVANSFGTSVGAGTLTIPQALLIAAVFEVSGAVIAGGEVTN
TIRKGIVDLKGVDFEPIQFVFIMMSALLAAALWLLFASKKGLPVSTTHSIIGGIVGSA
VCMAVMNDAASGDLIRWGKLGGIGVSWVLSPVLGGAVSYFLFSRVKKNVLDYNAWAEG
TLKGIKQEKKAYKERHRLFFEGLSEAEKVEYATKMAHDAQIYDEPEFDPQELQSEYYR
GLYAFDNRKNNVDSYKALHSWIPFIASFGAMMISAMLIFKGLKNLHLGMSNVNSFLTI
FMIGAAVWMGTFVFAKSLKRKDLGKSTFQMFSWMQVFTACGFAFSHGANDIANAIGPF
AAIMDVLRTNSVAAQNVVPPIAMLTFGIALIVGLWFVGKEVIKTVGTSLAEMHPASGF
TAELSAASVVMGASLMGLPVSSTHILVGAVLGIGLVNRNANWKLMKPIGLAWVITLPA
AAVLSVVCYLVLQAVF"
misc_feature 379938..>380447
/locus_tag="NMB0378"
/note="Phosphate/sulphate permeases [Inorganic ion
transport and metabolism]; Region: PitA; COG0306"
/db_xref="CDD:223383"
misc_feature <380850..381386
/locus_tag="NMB0378"
/note="Phosphate/sulphate permeases [Inorganic ion
transport and metabolism]; Region: PitA; COG0306"
/db_xref="CDD:223383"
gene complement(381742..383163)
/gene="hemN"
/locus_tag="NMB0379"
/db_xref="GeneID:902494"
CDS complement(381742..383163)
/gene="hemN"
/locus_tag="NMB0379"
/note="catalyzes the oxygen-independent formation of
protoporphyrinogen-IX from coproporphyrinogen-III"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="NP_273428.1"
/db_xref="GI:15676293"
/db_xref="GeneID:902494"
/translation="MKIIQIQNNHNVNDDRPEFDRALIASLPASGPRYTSYPTADRFH
DGFREGEYIKALHLRGMGALNKPLSLYIHIPFCNTICYYCGCNKIITKDKSRADAYIE
YLEKEMELLAPHLNGRHQLAQLHFGGGTPTFLSDEQIERVFRMIRKHFELIPTGEYSI
EIDPRKVSRDTVLMLGRLGFNRMSIGIQDFDPKVQAAVNRIQSYEETKEVIDAAREAG
FKSVSVDLIYGLPHQTSESIKTTIDTVLSLDPDRLALYHYAHLPHVFKPQRRIDTAAV
PDSEEKLDMLQYCVQTLTERGYVFIGMDHFAKPDDELSIALKEGFLQRNFQGYSTYAD
CDLVAIGVSSIGKIGSTYSQNERDIDAYYAAIDEGRLPIMRGYQLNQDDILRRNIIQD
LMCRFALDYRIYESMFGIPFDRYFKDELADLEKLAGLGLVRLNSHGLTVTPKGRFLIR
NIAMVFDYHLRHKETKAKYSQTV"
misc_feature complement(381745..383121)
/gene="hemN"
/locus_tag="NMB0379"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK09249"
/db_xref="CDD:236430"
misc_feature complement(<382447..382935)
/gene="hemN"
/locus_tag="NMB0379"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(382483..382485,382606..382608,
382675..382683,382774..382779,382783..382785,
382909..382917,382921..382923,382927..382929,
382933..382935))
/gene="hemN"
/locus_tag="NMB0379"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(381823..382029)
/gene="hemN"
/locus_tag="NMB0379"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene 383368..384102
/locus_tag="NMB0380"
/db_xref="GeneID:902495"
CDS 383368..384102
/locus_tag="NMB0380"
/note="identified by similarity to EGAD:41030; match to
protein family HMM PF00027; match to protein family HMM
PF00325"
/codon_start=1
/transl_table=11
/product="Crp/FNR family transcriptional regulator"
/protein_id="NP_273429.1"
/db_xref="GI:15676294"
/db_xref="GeneID:902495"
/translation="MASHNTTHQMKTLCSSCSLRELCLPVGLLPNELSQLDAVIRQSR
RLKKGEYLFCVGEAFTSLFAIRSGFFKTTVASQDGRDQVTGFFMSGELIGMDGICSHV
HSCDAVALEDSEVCELPFTHIEELGQNIPSLRTHFFRMMSREIVRDQGVMLLLGNMRA
EERIAAFLLNLSQRLYSRGFAANDFILRMSREEIGSYLGLKLETVSRTLSKFHQEGLI
SVEHKHIKILNLQVLKKMVSGCSHAI"
misc_feature 383446..384060
/locus_tag="NMB0380"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:223736"
misc_feature 383446..383778
/locus_tag="NMB0380"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:237999"
misc_feature order(383647..383652,383674..383682)
/locus_tag="NMB0380"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:237999"
misc_feature order(383740..383748,383758..383766)
/locus_tag="NMB0380"
/note="flexible hinge region; other site"
/db_xref="CDD:237999"
misc_feature 383845..384054
/locus_tag="NMB0380"
/note="helix_turn_helix, cAMP Regulatory protein
C-terminus; DNA binding domain of prokaryotic regulatory
proteins belonging to the catabolite activator protein
family; Region: HTH_CRP; cd00092"
/db_xref="CDD:238044"
misc_feature 383854..383859
/locus_tag="NMB0380"
/note="putative switch regulator; other site"
/db_xref="CDD:238044"
misc_feature order(383929..383931,383935..383943,383968..383970)
/locus_tag="NMB0380"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:238044"
misc_feature 383968..383988
/locus_tag="NMB0380"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238044"
misc_feature order(383971..383976,383986..383988)
/locus_tag="NMB0380"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238044"
misc_feature 383971..383976
/locus_tag="NMB0380"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:238044"
gene complement(384215..385165)
/gene="cysB"
/locus_tag="NMB0381"
/db_xref="GeneID:902496"
CDS complement(384215..385165)
/gene="cysB"
/locus_tag="NMB0381"
/note="identified by similarity to EGAD:32791; match to
protein family HMM PF00126; match to protein family HMM
PF03466"
/codon_start=1
/transl_table=11
/product="transcriptional regulator CysB-like protein"
/protein_id="NP_273430.1"
/db_xref="GI:15676295"
/db_xref="GeneID:902496"
/translation="MKLQQLKYALEVYQHNLNVSEAAEALFTSQPGISKQIKLLEEEI
GIQIFIRSGKRVVSVSQPGKVVLDIAERILRDVQNIKNIGSEFTGQDSGSLTVATTHT
QARYALPLIVADFVKRYPKVNLTIKQGSPAAIARMVTSGEADLAIVTERIDDHPELGK
LPCYDWTHAVIVPNDHPLLECRNPLRIEDLARFPLITYEFAFNAGSSIARAFSKARLE
QPDVALAAADTDVLKTYVRLGLGVGLMAKMAYNPDTDGDLQLVDAAHLFEPSPTWIAL
RSDTYLRGYAYDFIQAFAPHLTREKVDRILYTPISEDFSI"
misc_feature complement(384233..385165)
/gene="cysB"
/locus_tag="NMB0381"
/note="transcriptional regulator CysB-like protein;
Reviewed; Region: PRK12682"
/db_xref="CDD:183679"
misc_feature complement(384995..385159)
/gene="cysB"
/locus_tag="NMB0381"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(384287..384886)
/gene="cysB"
/locus_tag="NMB0381"
/note="The C-terminal substrate domain of LysR-type
transcriptional regulators CysB-like contains type 2
periplasmic binding fold; Region: PBP2_CysB_like; cd08413"
/db_xref="CDD:176105"
misc_feature complement(order(384557..384559,384668..384670,
384716..384724,384857..384862,384866..384868))
/gene="cysB"
/locus_tag="NMB0381"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176105"
misc_feature complement(order(384305..384310,384314..384325,
384452..384454,384461..384466,384473..384478,
384482..384499,384767..384769,384779..384799,
384818..384820,384830..384832,384839..384844,
384851..384856,384863..384865))
/gene="cysB"
/locus_tag="NMB0381"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176105"
gene 385529..386257
/gene="rmpM"
/locus_tag="NMB0382"
/db_xref="GeneID:902497"
CDS 385529..386257
/gene="rmpM"
/locus_tag="NMB0382"
/note="identified by similarity to EGAD:10394; match to
protein family HMM PF00691"
/codon_start=1
/transl_table=11
/product="outer membrane protein class 4"
/protein_id="NP_273431.1"
/db_xref="GI:15676296"
/db_xref="GeneID:902497"
/translation="MTKQLKLSALFVALLASGTAVAGEASVQGYTVSGQSNEIVRNNY
GECWKNAYFDKASQGRVECGDAVAAPEPEPEPEPAPAPVVVVEQAPQYVDETISLSAK
TLFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTDFMGSDKYNQALSERRAYV
VANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPD
RRVDVKIRSIVTRQVVPAHNHHQH"
misc_feature <385808..386206
/gene="rmpM"
/locus_tag="NMB0382"
/note="Outer membrane protein and related
peptidoglycan-associated (lipo)proteins [Cell envelope
biogenesis, outer membrane]; Region: OmpA; COG2885"
/db_xref="CDD:225439"
misc_feature 385838..>386080
/gene="rmpM"
/locus_tag="NMB0382"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature order(385847..385852,385949..385954,385961..385963,
385973..385978,385985..385987)
/gene="rmpM"
/locus_tag="NMB0382"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
gene 386278..386505
/locus_tag="NMB0383"
/db_xref="GeneID:902498"
CDS 386278..386505
/locus_tag="NMB0383"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273432.1"
/db_xref="GI:15676297"
/db_xref="GeneID:902498"
/translation="MHEVSGFCTRYCCNIRETSVGIDDVKQTPAFAGFVFLGGFLKRL
SSESGCRFGFGFRFRFRFRFRFRFVSHCRAL"
gene 386781..387077
/locus_tag="NMB0384"
/db_xref="GeneID:902499"
CDS 386781..387077
/locus_tag="NMB0384"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273433.1"
/db_xref="GI:15676298"
/db_xref="GeneID:902499"
/translation="MDGIVPDVCGTVCRIWFYHQPFSVETPSVAAIEPNRWRKLPLCI
RGGVQCGALICRLCVETGWSVHTGTVWPKLKVKYAETLNEPLYCLYGLCCLAMI"
gene 387108..388064
/gene="thiL"
/locus_tag="NMB0385"
/db_xref="GeneID:902500"
CDS 387108..388064
/gene="thiL"
/locus_tag="NMB0385"
/EC_number="2.7.4.16"
/note="catalyzes the formation of thiamine diphosphate
from thiamine phosphate ant ATP"
/codon_start=1
/transl_table=11
/product="thiamine monophosphate kinase"
/protein_id="NP_273434.1"
/db_xref="GI:15676299"
/db_xref="GeneID:902500"
/translation="MKEFDFIKRYLQTGTDNDVVLGIGDDAAIVRPREGFDLCFSADM
LLKDRHFFADVKPEDLAWKVLAVNISDMAAMGAIPRWVLLSAALPELDEVWLKRFCGS
FFGLAKKFGVTLIGGDTTKGDMAFNVTIIGELPKGRALRRDAAVAGDDIWVSGRIGMA
AAALNCRLKRCVLPDEVFAECEQKLLHPEPRVGLGLALLPFARAAQDVSDGLAQDLGH
ILTASGKGAEIWADSLPSLSVLKDILPRAQWLSYTLAGGDDYELVFTAPESCRSRVFD
AAERCGVPVTRIGKINGGCRLKVLDADGRELELHSLGFDHFG"
misc_feature 387111..388058
/gene="thiL"
/locus_tag="NMB0385"
/note="thiamine-monophosphate kinase; Region: thiL;
TIGR01379"
/db_xref="CDD:233387"
misc_feature 387111..387980
/gene="thiL"
/locus_tag="NMB0385"
/note="ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the...; Region: ThiL;
cd02194"
/db_xref="CDD:100030"
misc_feature order(387126..387128,387177..387185,387318..387320,
387357..387359,387405..387407,387453..387461,
387531..387533,387726..387728,387732..387737)
/gene="thiL"
/locus_tag="NMB0385"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100030"
misc_feature order(387135..387137,387186..387188,387231..387239,
387243..387245,387405..387407,387450..387452,
387459..387470,387486..387488,387492..387494)
/gene="thiL"
/locus_tag="NMB0385"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100030"
gene 388057..388542
/gene="pgpA"
/locus_tag="NMB0386"
/db_xref="GeneID:902501"
CDS 388057..388542
/gene="pgpA"
/locus_tag="NMB0386"
/EC_number="3.1.3.27"
/note="identified by similarity to EGAD:28303; match to
protein family HMM PF04608"
/codon_start=1
/transl_table=11
/product="phosphatidylglycerophosphatase A"
/protein_id="NP_273435.1"
/db_xref="GI:15676300"
/db_xref="GeneID:902501"
/translation="MADFKPDFAWLLKRPLCFLAFGFGSGLAPFAPGTFGTLAALPLA
FVLILLGIDGLLLAFLCIVLFMWGIRICAYAERETGVSDHGGIVWDEIVAMLFVLAFV
PFRWTWWLAAFVLFRLFDALKPSPVGWFDKNLHGGLGIMADDMAAAVMTLIVLRIAML
F"
misc_feature 388108..388533
/gene="pgpA"
/locus_tag="NMB0386"
/note="Phosphatidylglycerophosphatase A; a bacterial
membrane-associated enzyme involved in lipid metabolism;
Region: PgpA; cd06971"
/db_xref="CDD:133477"
misc_feature order(388111..388113,388177..388179,388231..388233,
388243..388248,388255..388260,388306..388308,
388315..388323,388330..388335,388339..388344,
388351..388353,388381..388389,388393..388401,
388405..388410,388414..388419,388528..388533)
/gene="pgpA"
/locus_tag="NMB0386"
/note="tetramer interfaces [polypeptide binding]; other
site"
/db_xref="CDD:133477"
misc_feature order(388315..388317,388324..388329,388474..388476,
388483..388488)
/gene="pgpA"
/locus_tag="NMB0386"
/note="binuclear metal-binding site [ion binding]; other
site"
/db_xref="CDD:133477"
gene complement(388602..390278)
/locus_tag="NMB0387"
/db_xref="GeneID:902502"
CDS complement(388602..390278)
/locus_tag="NMB0387"
/note="ChvD; in Agrobacterium tumefaciens, mutations in
both Walker boxes were found to affect virulence"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_273436.1"
/db_xref="GI:15676301"
/db_xref="GeneID:902502"
/translation="MSQQYVYSMLRVSKVVPPQKTIIKDISLSFFPGAKIGLLGLNGA
GKSTVLRIMAGVDKEFEGEAVPMGGIKIGYLPQEPELDPEKTVREEVESGLGEVAAAQ
KRLEEVYAEYANPDADFDALAEEQGRLEAIIAAGSSTGGGAEHELEIAADALRLPEWD
AKIDNLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVEWLEQFLVRFPGTVVAV
THDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEKRLENEAKSEAARVKAMKQEL
EWVRQNAKGRQAKSKARLARFEEMSNYEYQKRNETQEIFIPVAERLGNEVIEFVNVSK
SFGDKVLIDDLSFKVPAGAIVGIIGPNGAGKSTLFKMISGKEQPDSGEVKIGQTVKMS
LIDQSREGLQNDKTVFDNIAEGRDILQVGQFEIPARQYLGRFNFKGSDQSKIAGQLSG
GERGRLHLAKTLLSGGNVLLLDEPSNDLDVETLRALEDALLEFAGSVMVISHDRWFLD
RIATHILACEGDSKWVFFDGNYQEYEADKKRRLGEEGAKPKRIKYKPVTR"
misc_feature complement(388605..390278)
/locus_tag="NMB0387"
/note="putative ABC transporter ATP-binding protein;
Reviewed; Region: PRK11819"
/db_xref="CDD:236992"
misc_feature complement(<390048..390224)
/locus_tag="NMB0387"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
misc_feature complement(389562..>389792)
/locus_tag="NMB0387"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
misc_feature complement(389379..389582)
/locus_tag="NMB0387"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:221805"
misc_feature complement(388719..389300)
/locus_tag="NMB0387"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
gene 390665..392020
/locus_tag="NMB0388"
/db_xref="GeneID:902503"
CDS 390665..392020
/locus_tag="NMB0388"
/note="identified by similarity to EGAD:62114; match to
protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="sugar transporter"
/protein_id="NP_273437.1"
/db_xref="GI:15676302"
/db_xref="GeneID:902503"
/translation="MSEYTPQTAKQGLPALAKSTIWMLSFGFLGVQTAFTLQSSQMSR
IFQTLGADPHNLGWFFILPPLAGMLVQPIVGHYSDRTWKPRLGGRRLPYLLYGTLIAV
IVMILMPNSGSFGFGYASLAALSFGALMIALLDVSSNMAMQPFKMMVGDMVNEEQKGY
AYGIQSFLANTGAVVAAILPFVFAYIGLANTAEKGVVPQTVVVAFYVGAALLVITSAF
TIFKVKEYDPETYARYHGIDVAANQEKANWIELLKTAPKAFWTVTLVQFFCWFAFQYM
WTYSAGAIAENVWHTTDASSVGYQEAGNWYGVLAAVQSVAAVICSFVLAKVPNKYHKA
GYFGCLALGALGFFSVFFIGNQYALVLSYTLIGIAWAGIITYPLTIVTNALSGKHMGT
YLGLFNGSICMPQIVASLLSFVLFPMLGGLQATMFLVGGVVLLLGAFSVFLIKETHGG
V"
misc_feature 390725..391924
/locus_tag="NMB0388"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(390767..390769,390776..390784,390788..390793,
390842..390844,390851..390856,390863..390865,
390875..390880,390884..390889,391046..391051,
391088..391093,391100..391105,391112..391114,
391148..391153,391160..391165,391181..391183,
391472..391474,391481..391486,391493..391498,
391526..391528,391568..391570,391580..391582,
391592..391594,391601..391603,391613..391615,
391763..391765,391772..391777,391784..391786,
391796..391801,391808..391810,391841..391846,
391853..391858,391865..391870,391877..391879)
/locus_tag="NMB0388"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature 390797..391891
/locus_tag="NMB0388"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:219516"
gene 392024..393034
/gene="galM"
/locus_tag="NMB0389"
/db_xref="GeneID:902504"
CDS 392024..393034
/gene="galM"
/locus_tag="NMB0389"
/EC_number="5.1.3.3"
/note="identified by similarity to EGAD:7305; match to
protein family HMM PF01263"
/codon_start=1
/transl_table=11
/product="aldose 1-epimerase"
/protein_id="NP_273438.1"
/db_xref="GI:15676303"
/db_xref="GeneID:902504"
/translation="MSDTPATRDFGLIDGRAVTGYVLSNRRGTRVCVLDLGGIVQEFS
VLADGVRENLVVSFDDAASYADNPFQINKQIGRVAGRIRGAAFDINGRTYRVEANEGR
NALHGGSHGLAVTRFNAVAADGRSVVLRSRLQQSADGYPNDLDLDISYRLDEDDRLTV
SYRATALGDTVFDPTLHIYWRLDAGLHDAVLHIPQGGHMPADAEKLPVSTVSDDLEVF
DFSRPKPLDAAVAALRRETGRAGFDDAYRVPSDIGRPAAVLQAGRRRRISIYSDRNGL
VIFTAAPQDFARHDAGVYDALATEAQTLPDSLNWPEFGNIRLNKGDTREATIAYGIES
LS"
misc_feature 392084..393013
/gene="galM"
/locus_tag="NMB0389"
/note="galactose mutarotase_like; Region:
galactose_mutarotase_like; cd09019"
/db_xref="CDD:185696"
misc_feature order(392231..392233,392264..392266,392339..392341,
392552..392554,392558..392560,392750..392752,
392858..392860,392921..392923)
/gene="galM"
/locus_tag="NMB0389"
/note="active site"
/db_xref="CDD:185696"
misc_feature order(392552..392554,392921..392923)
/gene="galM"
/locus_tag="NMB0389"
/note="catalytic residues [active]"
/db_xref="CDD:185696"
gene 393268..395526
/gene="mapA"
/locus_tag="NMB0390"
/db_xref="GeneID:902505"
CDS 393268..395526
/gene="mapA"
/locus_tag="NMB0390"
/EC_number="2.4.1.8"
/note="identified by similarity to GP:3724125; match to
protein family HMM PF03632; match to protein family HMM
PF03633; match to protein family HMM PF03636"
/codon_start=1
/transl_table=11
/product="maltose phosphorylase"
/protein_id="NP_273439.1"
/db_xref="GI:15676304"
/db_xref="GeneID:902505"
/translation="MYTRIMEISPWTLRSAKLEKEHKRLQESLTSLGNGYMGMRGSFE
ETYSADSHLGTYIAGVWFPDKTRVGWWKNGYPKYFGKAINAFNFSKVKIFVDGQEVDL
AKNDVAGFSVELDMQHGVLRRSFTVFGVRFNVCKFLSVAQKELAVIRWEAVSVDGKTH
QVRIDSIIDADVKNEDSNYEEKFWQVLDKGVSDSLSYIAAQTVANPFGVEQFIVNAEQ
TFAGSFKALGGSQTDWQVSNSFESEVGSTPETFEKRVIVTTSRDYQSLEAVKAAGRAL
SEKIAGVAFETLLDAHKAGWLHRWEIADVVIEGSDEAQQGIRFNLFQLFSTYYGEDAR
LNIGPKGFTGEKYGGATYWDTEAYAVPLYLALAEPEVTRNLLQYRRNQLPQAQHNARE
QGLAGALYPMVTFTGIECHNEWEITFEEIHRNGAIPYAIYNYTNYTGDEGYLAKEGLE
VLVEVSRFWADRVHFSKRNGKYMIHGVTGPNEYENNINNNWYTNTLAAWVLDYTREAL
AKYPRPDLNVRADELEKWADISANMYRPHDEELGVFVQHDGFLDKDIRPVSALSPDDL
PLNQKWSWDKILRSPFIKQADVLQGIYFFSDRFNIDEKRRNFDFYEPMTVHESSLSPC
IHSILAAELGKEEKAVEMYQRTARLDLDNYNNDTEDGLHITSMTGSWLAIVQGFAQMK
TWGGKLSFAPFLPSAWTGYAFHINYRGRLIKVAVGKENVVFTLLKGESLDLQVYGKDI
TLDGSHTVALEK"
misc_feature 393277..395517
/gene="mapA"
/locus_tag="NMB0390"
/note="maltose phosphorylase; Provisional; Region:
PRK13807"
/db_xref="CDD:237517"
misc_feature 393301..394056
/gene="mapA"
/locus_tag="NMB0390"
/note="Glycosyl hydrolase family 65, N-terminal domain;
Region: Glyco_hydro_65N; pfam03636"
/db_xref="CDD:217652"
misc_feature 394219..395331
/gene="mapA"
/locus_tag="NMB0390"
/note="Glycosyl hydrolase family 65 central catalytic
domain; Region: Glyco_hydro_65m; pfam03632"
/db_xref="CDD:217648"
misc_feature 395341..395499
/gene="mapA"
/locus_tag="NMB0390"
/note="Glycosyl hydrolase family 65, C-terminal domain;
Region: Glyco_hydro_65C; pfam03633"
/db_xref="CDD:217649"
gene 395539..396204
/gene="pgmB"
/locus_tag="NMB0391"
/db_xref="GeneID:902506"
CDS 395539..396204
/gene="pgmB"
/locus_tag="NMB0391"
/EC_number="5.4.2.6"
/note="identified by similarity to EGAD:125152; match to
protein family HMM PF00702; match to protein family HMM
TIGR01509; match to protein family HMM TIGR01990; match to
protein family HMM TIGR02009"
/codon_start=1
/transl_table=11
/product="beta-phosphoglucomutase"
/protein_id="NP_273440.1"
/db_xref="GI:15676305"
/db_xref="GeneID:902506"
/translation="MTFTAVLFDLDGVITDTAEYHYRAWKKLAEELGISIDRKFNEQL
KGVSRDDSLKRILAHGGKTVSEAEFAELTRRKNDNYVEMIQAVKPEDVYPGILPLLEA
LRANGKKIALASASKNGPFLLERMGLTHFFDAIADPAAVAHSKPAPDIFLAAAEGVDA
DIRQCIGIEDAAAGVAAIKAAGALPIGVGKAEDLGSDIALVSGTAELTYAYLQSVWEQ
SGR"
misc_feature 395773..396033
/gene="pgmB"
/locus_tag="NMB0391"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 395878..395880
/gene="pgmB"
/locus_tag="NMB0391"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(396382..397890)
/gene="nadB"
/locus_tag="NMB0392"
/db_xref="GeneID:902507"
CDS complement(396382..397890)
/gene="nadB"
/locus_tag="NMB0392"
/EC_number="1.4.3.16"
/note="identified by similarity to EGAD:18907; match to
protein family HMM PF00890; match to protein family HMM
TIGR00551"
/codon_start=1
/transl_table=11
/product="L-aspartate oxidase"
/protein_id="NP_273441.1"
/db_xref="GI:15676306"
/db_xref="GeneID:902507"
/translation="MQTDCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRH
AQGGIAAAWSGEDDIEKHVADTLEAGAGLCDEAAVRAILSQGKPAIEWLLAQGVAFDR
NHNGLHLTREGGHTCRRIAHVADYTGEAVMQSLIAQIRRRPNIRVCERQMALDIQTES
GAACGLTVLDCRTQETYRIRARHTVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCA
VGNLEFIQFHPTGLARPSENGRTFLISEAVRGEGGILTNQAGERFMPHYDRRAELAPR
DIVARAIAAEIAKQTQDFVSLDISHQPAAFVRRHFPSIHRHCLSQCGLDITRQAIPVR
PVQHYTCGGIQTDPCGRTSLPQLYALGETACTGLHGANRLASNSLLECVVTARLCAQA
IADGQAFQAEPFQRPSESLSAEAGIFSDDLQNTFSRPVLQTFNQRHLGILRNDTGLRR
AIAQLQLWKQNQAEPHTASEYENRNLLECSLAVAQAAYRRRQNIGAHFNSDC"
misc_feature complement(396712..397890)
/gene="nadB"
/locus_tag="NMB0392"
/note="L-aspartate oxidase; Provisional; Region: PRK06175"
/db_xref="CDD:180442"
misc_feature complement(396385..397821)
/gene="nadB"
/locus_tag="NMB0392"
/note="Aspartate oxidase [Coenzyme metabolism]; Region:
NadB; COG0029"
/db_xref="CDD:223108"
misc_feature complement(<396388..396600)
/gene="nadB"
/locus_tag="NMB0392"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:217281"
gene complement(397939..398274)
/locus_tag="NMB0393"
/db_xref="GeneID:902508"
CDS complement(397939..398274)
/locus_tag="NMB0393"
/note="identified by similarity to GP:3647360; match to
protein family HMM PF00893"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein"
/protein_id="NP_273442.1"
/db_xref="GI:15676307"
/db_xref="GeneID:902508"
/translation="MQMHWLFLTVAILSEVCGSSMLKLSGGFSKLWPSIGVVVSFSVC
FWALSMTLKTMPLATAYAIWAGVGLVLTALVSVVFFGEKADFIGIVSIGLILLGVVLL
NTMSHMSGH"
misc_feature complement(<398017..398268)
/locus_tag="NMB0393"
/note="Membrane transporters of cations and cationic drugs
[Inorganic ion transport and metabolism]; Region: EmrE;
COG2076"
/db_xref="CDD:224987"
gene complement(398426..399538)
/gene="nadA"
/locus_tag="NMB0394"
/db_xref="GeneID:902509"
CDS complement(398426..399538)
/gene="nadA"
/locus_tag="NMB0394"
/note="3 different subfamilies; catalyzes the formation of
quinolinate from iminoaspartate and dihydroxyacetone
phosphate"
/codon_start=1
/transl_table=11
/product="quinolinate synthetase"
/protein_id="NP_273443.1"
/db_xref="GI:15676308"
/db_xref="GeneID:902509"
/translation="MQTAARRSFDYDMPLIQTPTSACQIRQAWAKVADTPDRETADRL
KDEIKALLKEKNAVLVAHYYVDPLIQDLALETGGCVGDSLEMARFGAEHEAGTLVVAG
VRFMGESAKILCPEKTVLMPDLEAECSLDLGCPEEAFSAFCDQHPDRTVVVYANTSAA
VKARADWVVTSSVALEIVSYLKSRGEKLIWGPDRHLGDYICRETGADMLLWQGSCIVH
NEFKGQELAALKAEHPEAVVLVHPESPQSVIELGDVVGSTSKLLKAAVSRPEKKFIVA
TDLGILHEMQKQAPDKQFIAAPTAGNGGSCKSCAFCPWMAMNSLGGIKYALTSGRNEI
LLDRKLGEAAKLPLQRMLDFAAGLKKKDVFNGMGPA"
misc_feature complement(398471..399466)
/gene="nadA"
/locus_tag="NMB0394"
/note="quinolinate synthetase; Provisional; Region:
PRK09375"
/db_xref="CDD:236489"
gene 399740..400678
/locus_tag="NMB0395"
/db_xref="GeneID:902510"
CDS 399740..400678
/locus_tag="NMB0395"
/note="identified by similarity to EGAD:161074"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273444.1"
/db_xref="GI:15676309"
/db_xref="GeneID:902510"
/translation="MDAYPEAEAPPQSIVELVPVLIAVTDGGLRVLTVAQGMLLPNGP
LSPLRNSLQAGVKLWVAKQTSQPMGYVEQLYTFVDTHRRNEHGMPVLYVSYLGLVREA
ADSILHPDAKWQDCYGYFPWEDLRTDGGQRDAVVGRLRIWANSADTEEVRQKRLKRIH
LCWGVEPENWSEEYVLQRYEMLYESGLIAEAAEPQANFDFALTGQPMRHDHRRVLATA
LSRLRAKIKYRPVIFELMPPEFTLLQLQNSVEAISGRLLHKQNFRRQIQQQNLIEPSD
TGVSGSKGRPAQLCRFRDDVLPDRLISDIGLPLGSR"
misc_feature 399740..400675
/locus_tag="NMB0395"
/note="Uncharacterized conserved protein [General function
prediction only]; Region: COG4111"
/db_xref="CDD:226596"
gene 400896..401777
/gene="nadC"
/locus_tag="NMB0396"
/db_xref="GeneID:902511"
CDS 400896..401777
/gene="nadC"
/locus_tag="NMB0396"
/EC_number="2.4.2.19"
/note="identified by similarity to EGAD:42463; match to
protein family HMM PF01729; match to protein family HMM
PF02749; match to protein family HMM TIGR00078"
/codon_start=1
/transl_table=11
/product="nicotinate-nucleotide pyrophosphorylase"
/protein_id="NP_273445.1"
/db_xref="GI:15676310"
/db_xref="GeneID:902511"
/translation="MPSEKTLFPLPDTLLRPIVEQALSEDLGRRGDITSAAVIAPDKT
AKLFLVSREDGVIAGMDLARLAFQTMDPSVRFQAEIRDGQAVRAGQTLAAVEGNARAL
LAAERTALNYLTHLSGIATATARAVAEVAEYGTDIVCSRKTIPLLRVLQKYAVRAGGG
VNHRMGLDDAVLIKDNHLAYCGSIAQAVQQAKQAVGALTCVEIEVDTLAQLDEAIAAG
AERILLDNMDDETLKEAANRCHTQTAHPHTIYCEASGGIGFDRLKRVAQTGVDGIALG
YLTHSSRSLDIGLDFVA"
misc_feature 400923..401771
/gene="nadC"
/locus_tag="NMB0396"
/note="Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism]; Region: NadC; COG0157"
/db_xref="CDD:223235"
misc_feature 400941..401765
/gene="nadC"
/locus_tag="NMB0396"
/note="Quinolinate phosphoribosyl transferase (QAPRTase or
QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis of
NAD in both prokaryotes and eukaryotes. It catalyses the
reaction of quinolinic acid (QA) with...; Region: QPRTase;
cd01572"
/db_xref="CDD:238806"
misc_feature order(400995..401000,401211..401216,401226..401228,
401316..401318,401322..401324,401334..401339,
401394..401399,401409..401411,401415..401417,
401421..401426,401433..401435,401466..401468,
401733..401735)
/gene="nadC"
/locus_tag="NMB0396"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238806"
misc_feature order(401313..401321,401382..401387,401568..401570,
401655..401660,401715..401717,401721..401726,
401733..401735)
/gene="nadC"
/locus_tag="NMB0396"
/note="active site"
/db_xref="CDD:238806"
gene 401805..402092
/locus_tag="NMB0397"
/db_xref="GeneID:902512"
CDS 401805..402092
/locus_tag="NMB0397"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273446.1"
/db_xref="GI:15676311"
/db_xref="GeneID:902512"
/translation="MSGKEPLNPNPVIASGRKCRLKDSSDGIFRKGRDALEKTAFQAG
ILFARQRGGIGRAGKRTGGGSFMPSESPPLRLFAKKVGKGTYNPVQSSINI"
gene 402184..402465
/locus_tag="NMB0398"
/db_xref="GeneID:902513"
CDS 402184..402465
/locus_tag="NMB0398"
/note="identified by similarity to EGAD:91779; match to
protein family HMM PF01022; match to protein family HMM
TIGR01199"
/codon_start=1
/transl_table=11
/product="ArsR family transcriptional regulator"
/protein_id="NP_273447.1"
/db_xref="GI:15676312"
/db_xref="GeneID:902513"
/translation="MNTIPLHTILKLMAHPERMAILIQLLDSERNIAELAKSLSLPAT
AVSNHLNRLRVEGLVDFTRYHRIIEYRLVSEEAAAILHTVRDLENKRVA"
misc_feature 402211..402441
/locus_tag="NMB0398"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature order(402211..402216,402220..402222,402229..402231,
402238..402243,402250..402255,402262..402264,
402352..402354,402409..402414,402418..402426,
402430..402438)
/locus_tag="NMB0398"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238042"
misc_feature order(402214..402219,402229..402237,402274..402282,
402307..402318,402322..402327,402334..402339,
402343..402348,402364..402372,402385..402393)
/locus_tag="NMB0398"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature order(402274..402276,402283..402285,402409..402411)
/locus_tag="NMB0398"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
gene 402525..403295
/gene="xthA"
/locus_tag="NMB0399"
/db_xref="GeneID:902514"
CDS 402525..403295
/gene="xthA"
/locus_tag="NMB0399"
/EC_number="3.1.11.2"
/note="identified by similarity to EGAD:104607; match to
protein family HMM PF03372; match to protein family HMM
TIGR00195; match to protein family HMM TIGR00633"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease III"
/protein_id="NP_273448.1"
/db_xref="GI:15676313"
/db_xref="GeneID:902514"
/translation="MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPA
AALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVI
NVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPE
KWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDH
ILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW"
misc_feature 402525..403286
/gene="xthA"
/locus_tag="NMB0399"
/note="Escherichia coli exonuclease III (ExoIII) and
Neisseria meningitides NExo-like subfamily of the ExoIII
family purinic/apyrimidinic (AP) endonucleases; Region:
ExoIII-like_AP-endo; cd09086"
/db_xref="CDD:197320"
misc_feature order(402543..402545,402624..402626,402837..402839,
402846..402848,402960..402962,402966..402968,
403263..403265)
/gene="xthA"
/locus_tag="NMB0399"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197320"
misc_feature order(402543..402545,402624..402626,402837..402839,
402960..402962,402966..402968,403173..403175,
403260..403265)
/gene="xthA"
/locus_tag="NMB0399"
/note="putative catalytic site [active]"
/db_xref="CDD:197320"
misc_feature order(402549..402554,402558..402566,402624..402626,
402702..402707,402837..402839,402846..402848,
402852..402854,402870..402872,402960..402962,
402966..402968,403122..403124,403131..403136,
403164..403166,403170..403175,403251..403256,
403263..403265)
/gene="xthA"
/locus_tag="NMB0399"
/note="active site"
/db_xref="CDD:197320"
misc_feature order(402549..402551,402624..402626,403260..403265)
/gene="xthA"
/locus_tag="NMB0399"
/note="metal binding site A [ion binding]; metal-binding
site"
/db_xref="CDD:197320"
misc_feature order(402549..402554,402558..402566,402702..402707,
402837..402839,402846..402848,402852..402854,
402870..402872,403131..403136,403251..403256)
/gene="xthA"
/locus_tag="NMB0399"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:197320"
misc_feature order(402837..402839,402846..402848,402960..402962,
402966..402968,403122..403124,403164..403166,
403170..403172,403263..403265)
/gene="xthA"
/locus_tag="NMB0399"
/note="putative AP binding site [nucleotide binding];
other site"
/db_xref="CDD:197320"
misc_feature order(402837..402839,402960..402962,402966..402968,
403263..403265)
/gene="xthA"
/locus_tag="NMB0399"
/note="putative metal binding site B [ion binding]; other
site"
/db_xref="CDD:197320"
gene 404238..404810
/locus_tag="NMB0400"
/db_xref="GeneID:903202"
CDS 404238..404810
/locus_tag="NMB0400"
/note="identified by similarity to GP:3005554"
/codon_start=1
/transl_table=11
/product="transposase, truncated"
/protein_id="NP_273449.1"
/db_xref="GI:15677991"
/db_xref="GeneID:903202"
/translation="MPYYLYCLRLRRLVLIFVNPLYLHQFHETQVGSVKQLIAHFDRL
IDELDKQIDDHTHTHFDGKAQVAEQIKGIGSITTATLMAMLPELRRLSHKRIAGLAGI
APHPRESGETKFKSRCFGGRSAVRKALYMATVAATRFEPLIRDFHQRPLSEGKPYKVA
VTACMRKLLTISNARMRDYFAENDTAENGI"
misc_feature <404304..404762
/locus_tag="NMB0400"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:226077"
misc_feature 404427..404681
/locus_tag="NMB0400"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:217002"
gene complement(405844..409449)
/gene="putA"
/locus_tag="NMB0401"
/db_xref="GeneID:902515"
CDS complement(405844..409449)
/gene="putA"
/locus_tag="NMB0401"
/EC_number="1.5.1.12"
/EC_number="1.5.99.8"
/note="proline utilization protein A; multifunctional
protein that functions in proline catabolism in the first
two enzymatic steps resulting in the conversion of proline
to glutamate; in Escherichia coli this protein self
regulates transcription via a DNA-binding domain at the
N-terminus but the protein from Pseudomonas does not have
this domain"
/codon_start=1
/transl_table=11
/product="bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase"
/protein_id="NP_273450.1"
/db_xref="GI:15676314"
/db_xref="GeneID:902515"
/translation="MFHFAFPAQTALRQAITDAYRRNEIEAVQDMLQRAQMSDEERNA
ASELARRLVTQVRAGRTKAGGVDALMHEFSLSSEEGIALMCLAEALLRIPDNATRDRL
IADKISDGNWKSHLNNSPSLFVNAAAWGLLITGKLTATNDKQMSSALSRLISKGGAPL
IRQGVNYAMRLLGKQFVTGQTIEEALQNGKEREKMGYRFSFDMLGEAAYTQADADRYY
RDYVEAIHAIGKDAAGQGVYEGNGISVKLSAIHPRYSRTQHGRVMGELLPRLKELFLL
GKKYDIGINIDAEEANRLELSLDLMEALVSDPDLAGYKGIGFVVQAYQKRCPFVIDYL
IDLARRNNQKLMIRLVKGAYWDSEIKWAQVDGLNGYPTYTRKVHTDISYLACARKLLS
AQDAVFPQFATHNAYTLGAIYQMGKGKDFEHQCLHGMGETLYDQVVGPQNLGRRVRVY
APVGTHETLLAYLVRRLLENGANSSFVNQIVDENISIDTLIRSPFDTIAEQGIHLHNA
LPLPRDLYGKCRLNSQGVDLSNENVLQQLQEQMNKAAAQDFHAASIVNGKARDVGEAQ
PIKNPADHDDIVGTVSFADAALAQEAVGAAVAAFPEWSATPAAERAACLRRFADLLEQ
HTPALMMLAVREAGKTLNNAIAEVREAVDFCRYYANEAEHTLPQDAKAVGAIVAISPW
NFPLAIFTGEVVSALAAGNTVIAKPAEQTSLIAGYAVSLMHEAGIPTSALQLVLGAGD
VGAALTNDARIGGVIFTGSTEVARLINKALAKRGDNPVLIAETGGQNAMIVDSTALAE
QVCADVLNSAFDSAGQRCSALRILCVQEDVADRMLDMIKGAMDELVVGKPIQLTTDVG
PVIDAEAQQNLLNHINKMKGVAKSYHEVKTAADVDSKKSTFVRPILFELNNLNELQRE
VFGPVLHVVRYRADELDNVIDQINSKGYALTHGVHSRIEGTVRHIRSRIEAGNVYVNR
NIVGAVVGVQPFGGHGLSGTGPKAGGSFYLQKLTRAGEWVAPTLSQIGQADEAALKRL
EALVHKLPFNAEEKKAAAAALGHARIRTLRRAETVLTGPTGERNSISWHAPKRVWIHG
GSTVQAFAALTELAASGIQAVVEPDSPLASYTADLEGLLLVNGKPETAGISHVAALSP
LDSARKQELAAHDGALIRILPSENGLDILQVFEEISCSVNTTAAGGNASLMAVAD"
misc_feature complement(405847..409449)
/gene="putA"
/locus_tag="NMB0401"
/note="bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed; Region: PRK11905"
/db_xref="CDD:237018"
misc_feature complement(408136..409380)
/gene="putA"
/locus_tag="NMB0401"
/note="Proline dehydrogenase [Amino acid transport and
metabolism]; Region: PutA; COG0506"
/db_xref="CDD:223580"
misc_feature complement(406369..408036)
/gene="putA"
/locus_tag="NMB0401"
/note="Delta(1)-pyrroline-5-carboxylate dehydrogenase,
PutA; Region: ALDH_PutA-P5CDH; cd07125"
/db_xref="CDD:143443"
misc_feature complement(order(406498..406500,406543..406545,
406999..407010,407104..407106,407398..407403,
407500..407502))
/gene="putA"
/locus_tag="NMB0401"
/note="Glutamate binding site [chemical binding]; other
site"
/db_xref="CDD:143443"
misc_feature complement(order(407164..407166,407173..407175,
407182..407184,407233..407235,407323..407328,
407332..407334,407410..407415))
/gene="putA"
/locus_tag="NMB0401"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:143443"
misc_feature complement(order(407002..407004,407011..407013,
407104..407106,407401..407403))
/gene="putA"
/locus_tag="NMB0401"
/note="catalytic residues [active]"
/db_xref="CDD:143443"
gene complement(409698..411224)
/gene="putP"
/locus_tag="NMB0402"
/db_xref="GeneID:902516"
CDS complement(409698..411224)
/gene="putP"
/locus_tag="NMB0402"
/note="identified by similarity to EGAD:13061; match to
protein family HMM PF00474; match to protein family HMM
TIGR00813; match to protein family HMM TIGR02121"
/codon_start=1
/transl_table=11
/product="sodium/proline symporter"
/protein_id="NP_273451.1"
/db_xref="GI:15676315"
/db_xref="GeneID:902516"
/translation="MNPMYITFAIYLVAVLLIGLAAYFSTRNFDDYILGGRSLGPFVT
AMSAGASDMSGWLLMGLPGAIYLSGLNEAWIAIGLLVGAYFNWLLVAGRLRVHTEYAN
NALTLPDYFFHRFGAGGHLMKVVSALIILFFFTIYCASGIVAGATLFQSLFEGMTYNQ
AMWLGAGATIAYTFLGGFLAVSWTDTLQASLMIFALILTPVMVYLGLGGAEQMSAAIQ
SVAAGTGKEYGSLFAGTTVIGIISTAAWGLGYFGQPHILARFMAAESAKSLVSARRIG
MTWMALCLAGAVAVGYFGIAYFGANPDKVSSMSGNHERIFIALSTLLFNPWIAGIILS
AILAAVMSTLSCQLLVCSSAITEDFYKGFLRKNAQQSELVWVGRLMVLAIAVISILIA
SDPNSKVLGLVSYAWAGFGAAFGPIVILSVLWKRITAYGALSGMVAGALTVVVWAEWV
KKPAQAAGESGLLTMYEIVPGFIVCLIVAVLVSLFNKEPSRETQERFEKADADYRATR
"
misc_feature complement(409770..411212)
/gene="putP"
/locus_tag="NMB0402"
/note="Na(+)/proline cotransporter PutP and related
proteins; solute binding domain; Region: SLC5sbd_PutP;
cd11475"
/db_xref="CDD:212045"
misc_feature complement(409731..411203)
/gene="putP"
/locus_tag="NMB0402"
/note="Predicted symporter [General function prediction
only]; Region: DhlC; COG4147"
/db_xref="CDD:226627"
misc_feature complement(order(410196..410201,410208..410210,
411066..411068,411075..411077))
/gene="putP"
/locus_tag="NMB0402"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212045"
gene complement(411560..411652)
/locus_tag="NMB0403"
/db_xref="GeneID:902517"
CDS complement(411560..411652)
/locus_tag="NMB0403"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273452.1"
/db_xref="GI:15676316"
/db_xref="GeneID:902517"
/translation="MPSENGRRIIGKTYRASFAVAKLHLKTPAA"
gene 411707..412027
/locus_tag="NMB0404"
/db_xref="GeneID:902518"
CDS 411707..412027
/locus_tag="NMB0404"
/note="identified by similarity to EGAD:36570; match to
protein family HMM PF04380"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273453.1"
/db_xref="GI:15676317"
/db_xref="GeneID:902518"
/translation="MFGKQLFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLV
TREEFDIQQQVLIKTRTKLAALEARLEKLEAAQNPERAALEAAEAAAEEAVAEIRQQT
EAGE"
misc_feature 411707..>411880
/locus_tag="NMB0404"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2960"
/db_xref="CDD:225508"
gene 412041..413537
/gene="comM"
/locus_tag="NMB0405"
/db_xref="GeneID:902519"
CDS 412041..413537
/gene="comM"
/locus_tag="NMB0405"
/note="identified by similarity to EGAD:28125; match to
protein family HMM PF01078; match to protein family HMM
TIGR00368"
/codon_start=1
/transl_table=11
/product="competence protein ComM"
/protein_id="NP_273454.1"
/db_xref="GI:15676318"
/db_xref="GeneID:902519"
/translation="MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDMEVKE
SRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGRFDLPIAIGILAASGQVAPEKLE
EYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLM
MGPPGTGKSMLSQRLPGILPPLTEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSAS
AAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLENGEIHISRAARQA
VYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSL
SAAELMQQEAGESSASVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEAL
GGLLEKLSLSARSFHRIMRVARTLADLAGDEEVGRSHVMKAIGFRRAL"
misc_feature 412083..413528
/gene="comM"
/locus_tag="NMB0405"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:223679"
misc_feature 412101..412466
/gene="comM"
/locus_tag="NMB0405"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature 412614..413231
/gene="comM"
/locus_tag="NMB0405"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase; pfam01078"
/db_xref="CDD:144608"
misc_feature 413244..413525
/gene="comM"
/locus_tag="NMB0405"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:222052"
gene 413637..414506
/locus_tag="NMB0406"
/db_xref="GeneID:902520"
CDS 413637..414506
/locus_tag="NMB0406"
/note="identified by similarity to EGAD:40704; match to
protein family HMM PF05036; match to protein family HMM
TIGR02223"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273455.1"
/db_xref="GI:15676319"
/db_xref="GeneID:902520"
/translation="MFMNKFSQSGKGLSGFFFGLILATVIIAGILFYLNQSGQNAFKI
PASSKQPAETEILKPKNQPKEDIQPEPADQNALSEPDAATEAEQSDAEKAADKQPVAD
KADEVEEKAGEPEREEPDGQAVRKKALTEEREQTVREKAQKKDAETVKKQAVKPSKET
EKKASKEEKKAAKEKVAPKPTPEQILNSGSIEKARSAAAKEVQKMKTSDKAEATHYLQ
MGAYADRQSAEGQRAKLAILGISSKVVGYQAGHKTLYRVQSGNMSADAVKKMQDELKK
HEVASLIRSIESK"
misc_feature 413697..414494
/locus_tag="NMB0406"
/note="cell division protein FtsN; Region: ftsN;
TIGR02223"
/db_xref="CDD:233787"
misc_feature 414267..414488
/locus_tag="NMB0406"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene 414509..415153
/gene="dsbA-3"
/locus_tag="NMB0407"
/db_xref="GeneID:902521"
CDS 414509..415153
/gene="dsbA-3"
/locus_tag="NMB0407"
/note="identified by similarity to EGAD:98963; match to
protein family HMM PF01323"
/codon_start=1
/transl_table=11
/product="thiol:disulfide interchange protein DsbA"
/protein_id="NP_273456.1"
/db_xref="GI:15676320"
/db_xref="GeneID:902521"
/translation="MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIE
VLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGL
KYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK"
misc_feature 414578..415117
/gene="dsbA-3"
/locus_tag="NMB0407"
/note="DsbA family, DsbA subfamily; DsbA is a monomeric
thiol disulfide oxidoreductase protein containing a redox
active CXXC motif imbedded in a TRX fold. It is involved
in the oxidative protein folding pathway in prokaryotes,
and is the strongest thiol...; Region: DsbA_DsbA; cd03019"
/db_xref="CDD:239317"
misc_feature order(414665..414667,414671..414676,415019..415021)
/gene="dsbA-3"
/locus_tag="NMB0407"
/note="catalytic residues [active]"
/db_xref="CDD:239317"
misc_feature 414755..414763
/gene="dsbA-3"
/locus_tag="NMB0407"
/note="hinge region; other site"
/db_xref="CDD:239317"
misc_feature order(414773..414799,414812..414871,414881..414907,
414926..414955)
/gene="dsbA-3"
/locus_tag="NMB0407"
/note="alpha helical domain; other site"
/db_xref="CDD:239317"
gene 415186..416007
/gene="bacA"
/locus_tag="NMB0408"
/db_xref="GeneID:902522"
CDS 415186..416007
/gene="bacA"
/locus_tag="NMB0408"
/EC_number="2.7.1.66"
/note="BacA; phosphatase activity in Escherichia coli not
kinase; involved in bacitracin resistance as bacitracin
supposedly sequesters undecaprenyl disphosphate which
reduces the pool of lipid carrier available to the cell"
/codon_start=1
/transl_table=11
/product="undecaprenyl pyrophosphate phosphatase"
/protein_id="NP_273457.1"
/db_xref="GI:15676321"
/db_xref="GeneID:902522"
/translation="MDFLIVLKALMMGLVEGFTEFLPISSTGHLIVFGNLIGFHSNHK
VFEIAIQLGAVLAVVFEYRQRFSNVLHGLGKDRKANRFVLNLAIAFIPAAVMGLLFGK
QIKEYLFNPLSVAVMLVLGGFFILWVEKRQSRAEPKIADVDALRPIDALMIGVAQVFA
LVPGTSRSGSTIMGGMLWGIERKTATEFSFFLAVPMMVAATAYDVLKHYRFFTLHDVG
LILIGFIAAFVSGLVAVKALLRFVSKKNYIPFAYYRIVFGIAIIILWLSGWISWE"
misc_feature 415189..415956
/gene="bacA"
/locus_tag="NMB0408"
/note="undecaprenyl pyrophosphate phosphatase; Reviewed;
Region: PRK00281"
/db_xref="CDD:234712"
gene complement(416289..416364)
/gene="tRNA-Ala-4"
/locus_tag="NMBt17"
/db_xref="GeneID:902523"
tRNA complement(416289..416364)
/gene="tRNA-Ala-4"
/locus_tag="NMBt17"
/product="tRNA-Ala"
/db_xref="GeneID:902523"
gene complement(416372..416448)
/gene="tRNA-Met-3"
/locus_tag="NMBt18"
/db_xref="GeneID:902524"
tRNA complement(416372..416448)
/gene="tRNA-Met-3"
/locus_tag="NMBt18"
/product="tRNA-Met"
/db_xref="GeneID:902524"
gene complement(416580..417791)
/locus_tag="NMB0409"
/db_xref="GeneID:902525"
CDS complement(416580..417791)
/locus_tag="NMB0409"
/note="identified by similarity to EGAD:48967; match to
protein family HMM PF02636"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273458.1"
/db_xref="GI:15676322"
/db_xref="GeneID:902525"
/translation="MTAPVPTCNMSGNPINLHKLTLIMPLPSPEARQFSLKLQTLIAE
KIGKHGNWIPFSRFMELVLYAPQYGYYTGGSHKIGNTGDFITAPTLTSLFAQTLARQL
QELLSQTAGNIYEFGAGTGQLAADLLGSISDGISRYYIIEISPELAARQKNLIQARAP
EASQKVVHLTALPEAFDGIIIGNEVLDAMPVEIVRKNEGGSFEHVGVCLDNDRFTYSA
RPLHDLQLSALASLYFPQTDYPYTSELHPQQYAFIRTLASRLEHGCMIFIDYGFDAAQ
YYHPQRNQGTLIGHYRHHIIHNPFDFIGLADLTAHVNFTDIAQAGTDAGLDLIGYLPQ
SHFLLNLGITELLAQTGKTDSAAYICEAAAVQKLIDQHEMGELFKVIAFGKNIGIDWA
GFRFGDICHKL"
misc_feature complement(416601..417686)
/locus_tag="NMB0409"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1565"
/db_xref="CDD:224481"
misc_feature complement(417219..417461)
/locus_tag="NMB0409"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl17173"
/db_xref="CDD:247727"
gene 418070..418525
/locus_tag="NMB0410"
/db_xref="GeneID:902526"
CDS 418070..418525
/locus_tag="NMB0410"
/note="MraZ; UPF0040; crystal structure shows similarity
to AbrB"
/codon_start=1
/transl_table=11
/product="cell division protein MraZ"
/protein_id="NP_273459.1"
/db_xref="GI:15676323"
/db_xref="GeneID:902526"
/translation="MFGGAHELSIDSKGRLAVPAKFRDILSRLYTPAVVVTLESKHKL
LMYPVAEWEKVAAQLLNLKVADNPVLRRFQNLLLHNAEILEWDSAGRVLVSAGLRKRV
DFDREVVLVGRANRLELWGREQWEAEMVQALDDDPDELAFQLSQTDLQL"
misc_feature 418070..418522
/locus_tag="NMB0410"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2001"
/db_xref="CDD:224912"
misc_feature 418070..418297
/locus_tag="NMB0410"
/note="MraZ protein; Region: MraZ; pfam02381"
/db_xref="CDD:111290"
misc_feature 418319..418498
/locus_tag="NMB0410"
/note="MraZ protein; Region: MraZ; pfam02381"
/db_xref="CDD:111290"
gene 418522..419508
/gene="mraW"
/locus_tag="NMB0411"
/db_xref="GeneID:902527"
CDS 418522..419508
/gene="mraW"
/locus_tag="NMB0411"
/note="identified by similarity to EGAD:17026; match to
protein family HMM PF01795; match to protein family HMM
TIGR00006"
/codon_start=1
/transl_table=11
/product="S-adenosyl-methyltransferase MraW"
/protein_id="NP_273460.1"
/db_xref="GI:15676324"
/db_xref="GeneID:902527"
/translation="MSGAESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLIL
SRLGDAGRLIVFDKDPQAIAVAEELARSDKRVGVVHGGFASFQTALDGLGIGKVDGAL
FDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGE
ERFSRRIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQDPATRTFQAVRIFINRE
LEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADL
PELPLKIVGRALKPGEAEIAANPRARSAVLRVAERTAGPIPEQSQRKTSEWQ"
misc_feature 418537..419457
/gene="mraW"
/locus_tag="NMB0411"
/note="MraW methylase family; Region: Methyltransf_5;
cl17771"
/db_xref="CDD:248325"
misc_feature 418540..419460
/gene="mraW"
/locus_tag="NMB0411"
/note="16S rRNA m(4)C1402 methyltranserfase; Provisional;
Region: PRK00050"
/db_xref="CDD:234597"
gene 419499..419768
/locus_tag="NMB0412"
/db_xref="GeneID:902528"
CDS 419499..419768
/locus_tag="NMB0412"
/note="identified by similarity to EGAD:7061; match to
protein family HMM TIGR02209"
/codon_start=1
/transl_table=11
/product="cell division protein FtsL-related protein"
/protein_id="NP_273461.1"
/db_xref="GI:15676325"
/db_xref="GeneID:902528"
/translation="MAMNKLNFLLLLAVCVSAFSVVMQQNQYRLNFTALDKAKKQEIA
LEQDYAQMRLQQARLANHEAIRAAAEKQNLHPPVSGNTFMVEHQR"
misc_feature <419499..419765
/locus_tag="NMB0412"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3117"
/db_xref="CDD:225659"
gene 419829..421574
/gene="penA"
/locus_tag="NMB0413"
/db_xref="GeneID:902529"
CDS 419829..421574
/gene="penA"
/locus_tag="NMB0413"
/note="identified by similarity to EGAD:40734; match to
protein family HMM PF00905; match to protein family HMM
PF03717"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein 2"
/protein_id="NP_273462.1"
/db_xref="GI:15676326"
/db_xref="GeneID:902529"
/translation="MLIKSEYKPRMLPKEEQVKKPMTSNGRISFVLMAIAVLFAGLIA
RGLYLQTVTYNFLKEQGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPKEM
KEMPSAAQLERLSELVDVPVDVLRNKLEQKGKSFIWIKRQLDPKVAEEVKALGLENFV
FEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLHGEDGAEVVLRDRQGNIV
DSLDSPRNKAPKNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEIL
ALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNT
QPYKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRM
HSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPVSFE
KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGR
YADNKHIATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLNILGI
SPTKPLTAAAVKTPS"
misc_feature 419850..421541
/gene="penA"
/locus_tag="NMB0413"
/note="Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane];
Region: FtsI; COG0768"
/db_xref="CDD:223839"
misc_feature 420039..420494
/gene="penA"
/locus_tag="NMB0413"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:217689"
misc_feature 420615..421499
/gene="penA"
/locus_tag="NMB0413"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:216183"
gene 421599..423077
/gene="murE"
/locus_tag="NMB0414"
/db_xref="GeneID:902530"
CDS 421599..423077
/gene="murE"
/locus_tag="NMB0414"
/EC_number="6.3.2.13"
/note="involved in cell wall formation; peptidoglycan
synthesis; cytoplasmic enzyme; catalyzes the addition of
meso-diaminopimelic acid to the nucleotide precursor
UDP-N-aceylmuramoyl-l-alanyl-d-glutamate"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase"
/protein_id="NP_273463.1"
/db_xref="GI:15676327"
/db_xref="GeneID:902530"
/translation="MFSKLTPLAETGIPTLSCANAAGRLLHSDSRQIKQGDIFVACPG
EYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGILAAQVYGN
VSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAP
VDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEA
YGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEHADIRITDF
TASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIR
PASGRMDCIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRG
KRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAVRYAVE
QAAANDIILIAGKGHENYQDVQGVKHRFSDLEIVGQALLTRK"
misc_feature 421656..423038
/gene="murE"
/locus_tag="NMB0414"
/note="UDP-N-acetylmuramyl-tripeptide synthetase; Region:
murE; TIGR01085"
/db_xref="CDD:233265"
misc_feature 421683..421898
/gene="murE"
/locus_tag="NMB0414"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:216373"
misc_feature 421938..422510
/gene="murE"
/locus_tag="NMB0414"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature 422610..422870
/gene="murE"
/locus_tag="NMB0414"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene 423100..424747
/locus_tag="NMB0415"
/note="conserved hypothetical protein, authentic
frameshift; this gene contains a frame shift which is not
the result of sequencing error; identified by similarity
to EGAD:28018"
/pseudo
/db_xref="GeneID:902531"
gene 424872..426239
/gene="murF"
/locus_tag="NMB0416"
/db_xref="GeneID:902532"
CDS 424872..426239
/gene="murF"
/locus_tag="NMB0416"
/note="identified by similarity to EGAD:28149; match to
protein family HMM PF01225; match to protein family HMM
PF02875; match to protein family HMM TIGR01143"
/codon_start=1
/transl_table=11
/product="UDP-MurNAc-pentapeptide synthetase"
/protein_id="NP_273464.1"
/db_xref="GI:15676328"
/db_xref="GeneID:902532"
/translation="MKPLDLNFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALA
GERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRENVNPF
VFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAV
IEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDG
IALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAV
VLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDD
TYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGELGEDEAAAMHAEVGAYARDQGIE
AAYFVGDNSVEAAEKFGADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVE
ALEDK"
misc_feature 424938..425159
/gene="murF"
/locus_tag="NMB0416"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:216373"
misc_feature 424956..426227
/gene="murF"
/locus_tag="NMB0416"
/note="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Region: murF; TIGR01143"
/db_xref="CDD:233291"
misc_feature 425190..425729
/gene="murF"
/locus_tag="NMB0416"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature 425817..>425951
/gene="murF"
/locus_tag="NMB0416"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene 426242..426418
/locus_tag="NMB0417"
/db_xref="GeneID:902533"
CDS 426242..426418
/locus_tag="NMB0417"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273465.1"
/db_xref="GI:15676329"
/db_xref="GeneID:902533"
/translation="MKSRRFFKALLLIAALVGAFYAGMRTQAYLYEDLCLDLGGGKNP
GSYPICVIEKVPAR"
misc_feature 426242..>426370
/locus_tag="NMB0417"
/note="bifunctional preprotein translocase subunit
SecD/SecF; Reviewed; Region: PRK13024"
/db_xref="CDD:237276"
gene 426665..427747
/gene="mraY"
/locus_tag="NMB0418"
/db_xref="GeneID:902534"
CDS 426665..427747
/gene="mraY"
/locus_tag="NMB0418"
/EC_number="2.7.8.13"
/note="First step of the lipid cycle reactions in the
biosynthesis of the cell wall peptidoglycan"
/codon_start=1
/transl_table=11
/product="phospho-N-acetylmuramoyl-pentapeptide-
transferase"
/protein_id="NP_273466.1"
/db_xref="GI:15676330"
/db_xref="GeneID:902534"
/translation="MFLWLAHFSNWLTGLNIFQYTTFRAVMAALTALAFSLMFGPWTI
RRLTALKCGQAVRTDGPQTHLVKNGTPTMGGSLILTAITVSTLLWGNWANPYIWILLG
VLLATGALGFYDDWRKVVYKDPNGVSAKFKMVWQSSVAIIASLALFYLAANSANNILI
VPFFKQIALPLGVVGFLVLSYLTIVGTSNAVNLTDGLDGLATFPVVLVAAGLAIFAYA
SGHSQFAQYLQLPYVAGANEVVIFCTAMCGACLGFLWFNAYPAQVFMGDVGALALGAA
LGTVAVIVRQEFVLVIMGGLFVVEAVSVMLQVGWYKKTKKRIFLMAPIHHHYEQKGWK
ETQVVVRFWIITIVLVLIGLSTLKIR"
misc_feature 426707..427744
/gene="mraY"
/locus_tag="NMB0418"
/note="phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional; Region: mraY; PRK00108"
/db_xref="CDD:234638"
misc_feature 426842..427732
/gene="mraY"
/locus_tag="NMB0418"
/note="Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of...;
Region: GT_MraY; cd06852"
/db_xref="CDD:133462"
misc_feature 427004..427009
/gene="mraY"
/locus_tag="NMB0418"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133462"
misc_feature 427454..427465
/gene="mraY"
/locus_tag="NMB0418"
/note="putative catalytic motif [active]"
/db_xref="CDD:133462"
misc_feature order(427613..427615,427631..427645)
/gene="mraY"
/locus_tag="NMB0418"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:133462"
gene 427873..428469
/locus_tag="NMB0419"
/db_xref="GeneID:902535"
CDS 427873..428469
/locus_tag="NMB0419"
/note="identified by similarity to EGAD:91374; match to
protein family HMM PF03937"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273467.1"
/db_xref="GI:15676331"
/db_xref="GeneID:902535"
/translation="MKQTVKWLAAALIALGLNRAVWADDVSDFRENLQAAAQGNAAAQ
YNLGAMYYKGRGVRRDDAEAVRWYRQAAEQGLAQAQYNLGWMYANGRGVRQDDTEAVR
WYRQAAAQGVVQAQYNLGVIYAEGRGVRQDDVEAVRWFRQAAAQGVAQAQNNLGVMYA
ERRGVRQDRALAQEWFGKACQNGDQDGCDNDQRLKAGY"
misc_feature <427873..428409
/locus_tag="NMB0419"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:223861"
misc_feature <428020..428097
/locus_tag="NMB0419"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature 428101..>428187
/locus_tag="NMB0419"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature 428221..>428295
/locus_tag="NMB0419"
/note="Sel1 repeat; Region: Sel1; cl02723"
/db_xref="CDD:243158"
gene 428553..429890
/gene="murD"
/locus_tag="NMB0420"
/db_xref="GeneID:902536"
CDS 428553..429890
/gene="murD"
/locus_tag="NMB0420"
/EC_number="6.3.2.9"
/note="UDP-N-acetylmuramoylalanine--D-glutamate ligase;
involved in peptidoglycan biosynthesis; cytoplasmic;
catalyzes the addition of glutamate to the nucleotide
precursor UDP-N-acetylmuramoyl-L-alanine during cell wall
formation"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase"
/protein_id="NP_273468.1"
/db_xref="GI:15676332"
/db_xref="GeneID:902536"
/translation="MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVS
QIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA
DIVNRRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKK
ADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQV
LNADDAFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIVTQDIPLQGLHN
AANVMAAVALCEAIGLSREALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGAT
AAAIAGLQNPLFVILGGMGKGQDFTPLRDALVGKAKGVFLIGVDAPQIRRDLDGCGLN
MTDCATLGEAVQTAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL"
misc_feature 428553..429887
/gene="murD"
/locus_tag="NMB0420"
/note="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional; Region: murD; PRK04308"
/db_xref="CDD:167786"
misc_feature 428898..429383
/gene="murD"
/locus_tag="NMB0420"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature 429474..429707
/gene="murD"
/locus_tag="NMB0420"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene 430070..431341
/gene="ftsW"
/locus_tag="NMB0421"
/db_xref="GeneID:902537"
CDS 430070..431341
/gene="ftsW"
/locus_tag="NMB0421"
/note="identified by similarity to EGAD:28142; match to
protein family HMM PF01098"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="NP_273469.1"
/db_xref="GI:15676333"
/db_xref="GeneID:902537"
/translation="MGDGVHTLLLDRPIVRDGRKFDAPLLWMVVLMTAFSLLMIYSAS
VYLASKEGGDQFFYLTRQAGFVVAGLIASGLLWFLCRMRTWRRLVPWIFALSGLLLVV
VLIAGREINGATRWIPLGPLNFQPTELFKLAVILYLASLFTRREEVLRSMESLGWQSI
WRGTANLIMSATNPQARRETLEMYGRFRAIILPIMLVAFGLVLIMVQPDFGSFVVITV
IAVGMLFLAGLPWKYFFVLVGSVLGGMVLMITAAPYRVQRVVAFLDPWKDPQGAGYQL
THSLMAIGRGEWFGMGLGASLSKRGFLPEAHTDFIFAIIAEEFGFFGMCVLIFCYGWL
VVRAFSIGKQSRDLGLTFNAYIASGIGIWIGIQSFFNIGVNIGALPTKGLTLPLMSYG
GSSVFFMLISMMLLLRIDYENRRKMRGYRVE"
misc_feature 430133..431308
/gene="ftsW"
/locus_tag="NMB0421"
/note="cell division protein FtsW; Region: ftsW;
TIGR02614"
/db_xref="CDD:233951"
gene 431345..432412
/gene="murG"
/locus_tag="NMB0422"
/db_xref="GeneID:902538"
CDS 431345..432412
/gene="murG"
/locus_tag="NMB0422"
/EC_number="2.4.1.-"
/note="UDP-N-acetylglucosamine--N-acetylmuramyl-
(pentapeptide) pyrophosphoryl-undecaprenol
N-acetylglucosamine transferase; involved in cell wall
formation; inner membrane-associated; last step of
peptidoglycan synthesis"
/codon_start=1
/transl_table=11
/product="undecaprenyldiphospho-muramoylpentapeptide
beta-N- acetylglucosaminyltransferase"
/protein_id="NP_273470.1"
/db_xref="GI:15676334"
/db_xref="GeneID:902538"
/translation="MGGKTFMLMAGGTGGHIFPALAVADSLRARGHHVIWLGSKDSME
ERIVPQYGIRLETLAIKGVRGNGIKRKLMLPVTLYQTVREAQRIIRKHRVECVIGFGG
FVTFPGGLAAKLLGVPIVIHEQNAVAGLSNRHLSRWAKRVLYAFPKAFSHEGGLVGNP
VRADISNLPVPAERFQGREGRLKILVVGGSLGADVLNKTVPQALALLPDNARPQMYHQ
SGRGKLGSLQADYDALGVKAECVEFITDMVSAYRDADLVICRAGALTIAELTAAGLGA
LLVPYPHAVDDHQTANARFMVQAEAGLLLPQTQLTAEKLAEILGGLNREKCLKWAENA
RTLALPHSADDVAEAAIACAA"
misc_feature 431354..432370
/gene="murG"
/locus_tag="NMB0422"
/note="undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional; Region: murG;
PRK00726"
/db_xref="CDD:234825"
misc_feature 431357..432370
/gene="murG"
/locus_tag="NMB0422"
/note="MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4
hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide...; Region: GT1_MurG; cd03785"
/db_xref="CDD:99961"
misc_feature order(431387..431389,431717..431719,431912..431914,
431996..431998,432071..432073,432083..432085,
432128..432139,432146..432148,432185..432187,
432206..432211,432218..432220)
/gene="murG"
/locus_tag="NMB0422"
/note="active site"
/db_xref="CDD:99961"
misc_feature order(431558..431560,431567..431569,431600..431602,
431684..431686,431759..431761)
/gene="murG"
/locus_tag="NMB0422"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99961"
gene 432570..433976
/gene="murC"
/locus_tag="NMB0423"
/db_xref="GeneID:902539"
CDS 432570..433976
/gene="murC"
/locus_tag="NMB0423"
/EC_number="6.3.2.8"
/note="Catalyzes the formation of
UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate
and L-alanine in peptidoglycan synthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramate--L-alanine ligase"
/protein_id="NP_273471.2"
/db_xref="GI:228970145"
/db_xref="GeneID:902539"
/translation="MKNRVTNIHFVGIGGVGMSGIAEVLHNLGFKVSGSDQARNAATE
HLGSLGIQVYPGHTAEHVNGADVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAELM
RFRDGIAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLGKGEYIVAE
ADESDASFLHLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCID
SEHVRAILPKVSKPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVL
NMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALL
VDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVL
TEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMG
AGSINRVPAALLALSKQI"
misc_feature 432570..433961
/gene="murC"
/locus_tag="NMB0423"
/note="UDP-N-acetylmuramate--L-alanine ligase;
Provisional; Region: murC; PRK00421"
/db_xref="CDD:234757"
misc_feature 432591..432884
/gene="murC"
/locus_tag="NMB0423"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:216373"
misc_feature 432969..433421
/gene="murC"
/locus_tag="NMB0423"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature 433509..433778
/gene="murC"
/locus_tag="NMB0423"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene 434089..435003
/gene="ddl"
/locus_tag="NMB0424"
/db_xref="GeneID:902540"
CDS 434089..435003
/gene="ddl"
/locus_tag="NMB0424"
/EC_number="6.3.2.4"
/note="D-alanine--D-alanine ligase; DdlA; DdlB;
cytoplasmic; catalyzes the formation of D-alanyl-D-alanine
from two D-alanines in peptidoglycan synthesis; there are
two forms of this enzyme in Escherichia coli"
/codon_start=1
/transl_table=11
/product="D-alanine--D-alanine ligase"
/protein_id="NP_273472.1"
/db_xref="GI:15676336"
/db_xref="GeneID:902540"
/translation="MQNFGKVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDP
KETPLSELKAQGFQTAFNILHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRC
KLIWQALGLPVPEFAVLHDDTDFDAVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS
VYEELKHLQGEIIAERFIGGGEYSCPVLNGKGLPGIHIIPATEFYDYEAKYNRDDTIY
QCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDFLKDTDGKLYLLEINTLPGMTSH
SLVPKSAAVTGVGFADLCIEILKTAHVG"
misc_feature 434089..435000
/gene="ddl"
/locus_tag="NMB0424"
/note="D-alanine--D-alanine ligase; Reviewed; Region: ddl;
PRK01372"
/db_xref="CDD:234948"
misc_feature 434104..434352
/gene="ddl"
/locus_tag="NMB0424"
/note="D-ala D-ala ligase N-terminus; Region:
Dala_Dala_lig_N; pfam01820"
/db_xref="CDD:216721"
misc_feature 434401..434985
/gene="ddl"
/locus_tag="NMB0424"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl17255"
/db_xref="CDD:247809"
gene 435014..435721
/gene="ftsQ"
/locus_tag="NMB0425"
/db_xref="GeneID:902541"
CDS 435014..435721
/gene="ftsQ"
/locus_tag="NMB0425"
/note="identified by similarity to EGAD:21305; match to
protein family HMM PF03799"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="NP_273473.1"
/db_xref="GI:15676337"
/db_xref="GeneID:902541"
/translation="MERLTRWLLVMMAMLLAASGLVWFYNSNHLPVKQVSLKGNLVYS
DKKTLGSLAKEYIHGNILRTDINGAQEAYRRYPWIASVMVRRRFPDTVEVVLTERKPV
ARWGDHALVDGEGNVFEARLDRPGMPVFRGAEGTSAEMLRRYDEFSTVLAKQGLGIKE
MTYTARSAWIVVLDNGITVRLGRENEMKRLRLFTEAWQHLLRKNKNRLSYVDMRYKDG
FSVRYASDGLPEKESEE"
misc_feature 435071..435715
/gene="ftsQ"
/locus_tag="NMB0425"
/note="Cell division septal protein [Cell envelope
biogenesis, outer membrane]; Region: FtsQ; COG1589"
/db_xref="CDD:224505"
misc_feature 435107..435310
/gene="ftsQ"
/locus_tag="NMB0425"
/note="POTRA domain, FtsQ-type; Region: POTRA_1;
pfam08478"
/db_xref="CDD:219857"
misc_feature 435317..435655
/gene="ftsQ"
/locus_tag="NMB0425"
/note="Cell division protein FtsQ; Region: FtsQ;
pfam03799"
/db_xref="CDD:217736"
gene 435807..437051
/gene="ftsA"
/locus_tag="NMB0426"
/db_xref="GeneID:902542"
CDS 435807..437051
/gene="ftsA"
/locus_tag="NMB0426"
/note="identified by similarity to GP:2707899; match to
protein family HMM PF02491; match to protein family HMM
TIGR01174"
/codon_start=1
/transl_table=11
/product="cell division protein"
/protein_id="NP_273474.1"
/db_xref="GI:15676338"
/db_xref="GeneID:902542"
/translation="MEQQQRYISVLDIGTSKVLALIGEVQDDDKINIVGLGQAPSRGL
RAGMVTNIDATVQAIRQAVNDAELMADTKITHVTTGIAGNHIRSLNSQGVVKIKDGEV
TQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVREPIGMSGVRLDTRVHIIT
GASTAVQNVQKCIERCGLKSDQIMLQPLASGQAVLTEDEKDLGVCVIDIGGGTTDIAV
YMNGAIRHTSVIPAGGNLITKDLSKSLRTPLDAAEYIKIHYGVASCDTEGLGEMIEVP
GVGDRTSRQVSSKVLAAIISARIQEIFGVVLGELQKSGFPKEVLNAGIVLTGGVSMMT
GIVEFAEKIFDLPVRTGAPQEMGGLSDRVRTPRFSTAIGLLHAACKLEGNLPQPENGA
VQEREGGGGLLARLKRWIENSF"
misc_feature 435825..436934
/gene="ftsA"
/locus_tag="NMB0426"
/note="cell division protein FtsA; Region: ftsA;
TIGR01174"
/db_xref="CDD:233300"
misc_feature 435828..436388
/gene="ftsA"
/locus_tag="NMB0426"
/note="Cell division protein FtsA; Region: FtsA;
smart00842"
/db_xref="CDD:214850"
misc_feature 436416..436844
/gene="ftsA"
/locus_tag="NMB0426"
/note="Cell division protein FtsA; Region: FtsA;
pfam14450"
/db_xref="CDD:222760"
gene 437170..438348
/gene="ftsZ"
/locus_tag="NMB0427"
/db_xref="GeneID:902543"
CDS 437170..438348
/gene="ftsZ"
/locus_tag="NMB0427"
/note="GTPase; similar structure to tubulin; forms
ring-shaped polymers at the site of cell division; other
proteins such as FtsA, ZipA, and ZapA, interact with and
regulate FtsZ function"
/codon_start=1
/transl_table=11
/product="cell division protein FtsZ"
/protein_id="NP_273475.1"
/db_xref="GI:15676339"
/db_xref="GeneID:902543"
/translation="MEFVYDVAESAVSPAVIKVIGLGGGGCNAINNMVANNVRGVEFI
SANTDAQSLAKNHAAKRIQLGTNLTRGLGAGANPDIGRAAAQEDREAIEEAIRGANML
FITTGMGGGTGTGSAPVVAEIAKSLGILTVAVVTRPFAYEGKRVHVAQAGLEQLKEHV
DSLIIIPNDKLMTALGEDVTMREAFRAADNVLRDAVAGISEVVTCPSEIINLDFADVK
TVMSNRGIAMMGSGYAQGIDRARMATDQAISSPLLDDVTLDGARGVLVNITTAPGCLK
MSELSEVMKIVNQSAHPDLECKFGAAEDETMSEDAIRITIIATGLKEKGAVDFVPARE
VEAVAPSKQEQSHNVEGMIRTNRGIRTMNLTAADFDNQSVLDDFEIPAILRRQHNSDK
"
misc_feature 437194..438336
/gene="ftsZ"
/locus_tag="NMB0427"
/note="cell division protein FtsZ; Validated; Region:
PRK09330"
/db_xref="CDD:236468"
misc_feature 437212..438129
/gene="ftsZ"
/locus_tag="NMB0427"
/note="FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those formed
by tubulin. FtsZ forms a ring-shaped septum at...; Region:
FtsZ_type1; cd02201"
/db_xref="CDD:100021"
misc_feature order(437236..437244,437251..437253,437323..437325,
437488..437508,437581..437586,437602..437604,
437671..437673,437722..437724,437731..437736,
437743..437745)
/gene="ftsZ"
/locus_tag="NMB0427"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:100021"
misc_feature order(437797..437802,437806..437808,437986..437988,
437992..438000,438007..438009)
/gene="ftsZ"
/locus_tag="NMB0427"
/note="SulA interaction site; other site"
/db_xref="CDD:100021"
gene 438487..439797
/locus_tag="NMB0428"
/db_xref="GeneID:902544"
CDS 438487..439797
/locus_tag="NMB0428"
/note="identified by similarity to EGAD:44500; match to
protein family HMM PF00860"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273476.1"
/db_xref="GI:15676340"
/db_xref="GeneID:902544"
/translation="MDTSKQTLLDGIFKLKANGTTVRTELMAGLTTFLTMCYIVIVNP
LILGETGMDMGAVFVATCIASAIGCFVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGV
PWQVALGAVFISGLIFILFSFFKVREMLVNALPMGLKMSIAAGIGLFLALISLKGAGI
IVANPATLVGLGDIHQPSALLALFGFAMVVVLGHFRVQGAIIITILTITVIASLMGLN
EFHGIIGEVPSIAPTFMQMDFEGLFTVSMVSVIFVFFLVDLFDSTGTLVGISHRAGLL
VDGKLPRLKRALLADSTAIVAGAALGTSSTTPYVESAAGVSAGGRTGLTAVTVGVLML
ACLMFSPLAKSVPAFATAPALLYVGTQMLRSARDIDWDDMTEAAPAFLTIVFMPFTYS
IADGIAFGFISYAVVKLLCRRTKDVPPMVWIVAVLWALKFWYLG"
misc_feature 438496..439794
/locus_tag="NMB0428"
/note="Xanthine/uracil/vitamin C permease [Nucleotide
transport and metabolism]; Region: COG2252"
/db_xref="CDD:225161"
gene 440170..440274
/locus_tag="NMB0429"
/db_xref="GeneID:902545"
CDS 440170..440274
/locus_tag="NMB0429"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273477.1"
/db_xref="GI:15676341"
/db_xref="GeneID:902545"
/translation="MKPIQMFSPFLNNPLVFFLSAVLPHNSERSAVFL"
gene 440420..441298
/gene="prpB"
/locus_tag="NMB0430"
/db_xref="GeneID:902546"
CDS 440420..441298
/gene="prpB"
/locus_tag="NMB0430"
/EC_number="4.1.3.30"
/note="catalyzes the formation of pyruvate and succinate
from 2-methylisocitrate"
/codon_start=1
/transl_table=11
/product="2-methylisocitrate lyase"
/protein_id="NP_273478.1"
/db_xref="GI:15676342"
/db_xref="GeneID:902546"
/translation="MMSQHSAGARFRQAVKESNPLAVAGCVNAYFARLATQSGFKAIY
LSGGGVAACSCGIPDLGITTMEDVLIDARRITDNVDTPLLVDIDVGWGGAFNIARTIR
NFERAGVAAVHIEDQVAQKRCGHRPNKAIVSKDEMVDRIKAAVDARVDENFVIMARTD
ALAVEGLDAAIERAQACVEAGADMIFPEAMTDLNMYRQFADAVKVPVLANITEFGSTP
LYTQSELAENGVSLVLYPLSSFRAASKAALNVYEAIMRDGTQAAVVDSMQTRAELYEH
LNYHAFEQKLDKLFQK"
misc_feature 440450..441181
/gene="prpB"
/locus_tag="NMB0430"
/note="Phosphoenolpyruvate phosphomutase; Region:
PEP_mutase; pfam13714"
/db_xref="CDD:222337"
misc_feature 440450..441178
/gene="prpB"
/locus_tag="NMB0430"
/note="Members of the ICL/PEPM enzyme family catalyze
either P-C or C-C bond formation/cleavage. Known members
are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate
hydrolase (PPH), carboxyPEP mutase (CPEP mutase),
oxaloacetate hydrolase (OAH), isocitrate...; Region:
ICL_PEPM; cd00377"
/db_xref="CDD:119340"
misc_feature order(440456..440458,440477..440479,440483..440494,
440498..440512,440516..440521,440528..440530,
440534..440542,440561..440563,440573..440575,
440579..440581,440588..440593,440600..440611,
440615..440620,440627..440632,440636..440641,
440648..440653,440693..440695,440711..440716,
440726..440728,440735..440737,440822..440827,
440834..440836,440843..440848,440855..440857,
441143..441151,441155..441163,441167..441175)
/gene="prpB"
/locus_tag="NMB0430"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:119340"
misc_feature order(440549..440551,440555..440563,440594..440596,
440675..440677,440681..440683,440762..440764,
440891..440893,440981..440983,441047..441049,
441053..441055,441125..441127)
/gene="prpB"
/locus_tag="NMB0430"
/note="active site"
/db_xref="CDD:119340"
misc_feature order(440594..440596,440675..440677,440681..440683,
440762..440764)
/gene="prpB"
/locus_tag="NMB0430"
/note="Mg2+/Mn2+ binding site [ion binding]; other site"
/db_xref="CDD:119340"
gene 441384..442538
/gene="pprC"
/locus_tag="NMB0431"
/db_xref="GeneID:902547"
CDS 441384..442538
/gene="pprC"
/locus_tag="NMB0431"
/EC_number="2.3.3.5"
/note="catalyzes the synthesis of 2-methylcitrate from
propionyl-CoA and oxaloacetate; also catalyzes the
condensation of oxaloacetate with acetyl-CoA but with a
lower specificity"
/codon_start=1
/transl_table=11
/product="methylcitrate synthase"
/protein_id="NP_273479.1"
/db_xref="GI:15676343"
/db_xref="GeneID:902547"
/translation="MTETTQTPTLKPKKSVALSGVAAGNTALCTVGRTGNDLSYRGYD
ILDLAQKCEFEEVAHLLIHGHLPNKFELAAYKTKLKSMRGLPIRVIKVLESLPAHTHP
MDVMRTGVSMLGCVHPERESHPESEARDIADKLIASLGSILLYWYQYSHNGKRIEVES
DEETIGGHFLQLLHGKRPSESHIKAMHVSLILYAEHEFNASTFTARVIAGTGSDMYSS
ITGAIGALKGPKHGGANEVAYDIQKRYRNADEAEADIRERIGRKEIVIGFGHPVYTIS
DPRNVVIKEVARGLSKETGDMRLFDIAERLESVMWEEKKMFPNLDWFSAVSYQKLGVP
TAMFTPLFVISRTTGWSAHVLEQRKDGKIIRPSANYTGPEDLAFVEIEER"
misc_feature 441384..442535
/gene="pprC"
/locus_tag="NMB0431"
/note="Citrate synthase [Energy production and
conversion]; Region: GltA; COG0372"
/db_xref="CDD:223449"
misc_feature 441429..442526
/gene="pprC"
/locus_tag="NMB0431"
/note="Subgroup of Escherichia coli (Ec) 2-methylcitrate
synthase (2MCS)_like. 2MCS catalyzes the condensation of
propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form
2-methylcitrate and coenzyme A (CoA) during propionate
metabolism. Citrate synthase (CS)...; Region:
Ec2MCS_like_1; cd06117"
/db_xref="CDD:99870"
misc_feature order(441429..441437,441444..441458,441642..441647,
441654..441659,441681..441683,441693..441695,
441705..441707,441714..441716,441858..441860,
441969..441983,441990..441995,442005..442007,
442014..442025,442032..442034,442053..442058,
442062..442073,442194..442196,442467..442499)
/gene="pprC"
/locus_tag="NMB0431"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99870"
misc_feature order(441438..441440,441969..441971,441978..441980,
442071..442079,442083..442085,442092..442094,
442173..442196,442203..442205,442218..442220,
442323..442325,442329..442331,442338..442340,
442344..442346,442407..442409,442419..442421,
442467..442469,442476..442478)
/gene="pprC"
/locus_tag="NMB0431"
/note="active site"
/db_xref="CDD:99870"
misc_feature order(441438..441440,441969..441971,441978..441980,
442071..442076,442173..442178,442182..442196,
442218..442220,442338..442340,442419..442421)
/gene="pprC"
/locus_tag="NMB0431"
/note="citrylCoA binding site [chemical binding]; other
site"
/db_xref="CDD:99870"
misc_feature order(441969..441971,441978..441980,442074..442079,
442191..442193,442218..442220,442344..442346,
442407..442409,442419..442421,442476..442478)
/gene="pprC"
/locus_tag="NMB0431"
/note="oxalacetate/citrate binding site [chemical
binding]; other site"
/db_xref="CDD:99870"
misc_feature order(442071..442076,442083..442085,442092..442094,
442173..442190,442194..442196,442203..442205,
442323..442325,442329..442331,442338..442340,
442344..442346,442467..442469)
/gene="pprC"
/locus_tag="NMB0431"
/note="coenzyme A binding site [chemical binding]; other
site"
/db_xref="CDD:99870"
misc_feature order(442074..442076,442191..442193,442344..442346)
/gene="pprC"
/locus_tag="NMB0431"
/note="catalytic triad [active]"
/db_xref="CDD:99870"
gene 442691..443479
/locus_tag="NMB0432"
/db_xref="GeneID:902548"
CDS 442691..443479
/locus_tag="NMB0432"
/note="identified by similarity to EGAD:24560; match to
protein family HMM PF01925"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273480.1"
/db_xref="GI:15676344"
/db_xref="GeneID:902548"
/translation="MEDLYIILALGLVAMIAGFIDAIAGGGGLITLPALLLAGIPPVS
AIATNKLQAAAATFSATVSFARKGLIDWKKGLPIAAASFVGGVAGALSVSLVSKDILL
AVVPVLLIFVALYFVFSPKLDGSKEGKARMSFFLFGLTVAPLLGFYDGVFGPGVGSFF
LIAFIVLLGCKLLNAMSYTKLANVACNLGSLSVFLLHGSIIFPIAATMAVGAFVGANL
GARFAVRFGSKLIKPLLIVISISMAVKLLIDERNPLYQMIVSMF"
misc_feature 442811..443437
/locus_tag="NMB0432"
/note="hypothetical protein; Provisional; Region:
PRK10621"
/db_xref="CDD:182593"
misc_feature 442811..443428
/locus_tag="NMB0432"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:216790"
gene 443557..446163
/gene="acnA"
/locus_tag="NMB0433"
/db_xref="GeneID:902549"
CDS 443557..446163
/gene="acnA"
/locus_tag="NMB0433"
/EC_number="4.2.1.3"
/note="Catalyzes the conversion of citrate to isocitrate"
/codon_start=1
/transl_table=11
/product="aconitate hydratase"
/protein_id="NP_273481.1"
/db_xref="GI:15676345"
/db_xref="GeneID:902549"
/translation="MAANQRYRKPLPGTDLEYYDARAACEDIKPGSYDKLPYTSRILA
ENLVNRADKVDLPTLQSWLGQLIEGKQEIDFPWYPARVVCHDILGQTALVDLAGLRDA
IAEKGGDPAKVNPVVQTQLIVDHSLAVECGGYDPDAFRKNREIEDRRNEDRFHFINWT
KTAFENVDVIPAGNGIMHQINLEKMSPVVQVKNGVAFPDTCVGTDSHTPHVDSLGVIS
VGVGGLEAETVMLGRASMMRLPDIVGVELNGKRQAGITATDIVLALTEFLRKERVVGA
FVEFFGEGARSLSIGDRATISNMTPEFGATAAMFAIDEQTIDYLKLTGRDDAQVKLVE
TYAKTAGLWADALKTAVYPRVLKFDLSSVTRNMAGPSNPHARFATADLAAKGLAKPYE
EPSDGQMPDGSVIIAAITSCTNTSNPRNVVAAALLARNANRLGLKRKPWVKSSFAPGS
KVAEIYLKEAGLLPEMEKLGFGIVAFACTTCNGMSGALDPKIQKEIIDRDLYATAVLS
GNRNFDGRIHPYAKQAFLASPPLVVAYALAGSIRFDIENDVLGVADGKEIRLKDIWPA
DEEIDAVVAEYVKPQQFRDVYVPMFDTGTAQKAPSPLYDWRPMSTYIRRPPYWEGALA
GERTLRGMRPLAILPDNITTDHLSPSNAILAVSAAGEYLAKMGLPEEDFNSYATHRGD
HLTAQRATFANPKLFNEMVKNEDGSVRQGSFARVEPEGETMRMWEAIETYMNRKQPLI
IIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLQFKPDTNRH
TLQLDGTETYDVVGERTPRCDLTLVIHRKNGETVEVPVTCCLDTAEEVLVYEAGGVLQ
RFAQDFLEGNAA"
misc_feature 443566..446148
/gene="acnA"
/locus_tag="NMB0433"
/note="2-methylisocitrate dehydratase, Fe/S-dependent;
Region: 2met_isocit_dHY; TIGR02333"
/db_xref="CDD:131386"
misc_feature 443797..445179
/gene="acnA"
/locus_tag="NMB0433"
/note="Aconitase A catalytic domain; Region: AcnA_IRP;
cd01586"
/db_xref="CDD:153136"
misc_feature order(443809..443811,443818..443820,444169..444174,
445000..445002,445087..445089,445102..445104)
/gene="acnA"
/locus_tag="NMB0433"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:153136"
misc_feature order(444175..444177,444790..444792,444988..444990,
444997..445002,445084..445086)
/gene="acnA"
/locus_tag="NMB0433"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:153136"
misc_feature 445465..445992
/gene="acnA"
/locus_tag="NMB0433"
/note="Aconitase swivel domain. Aconitase (aconitate
hydratase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle. This is
the aconitase swivel domain, which undergoes swivelling
conformational change in the enzyme...; Region:
Aconitase_swivel; cl00215"
/db_xref="CDD:241693"
misc_feature 445807..445815
/gene="acnA"
/locus_tag="NMB0433"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238236"
gene 446966..448135
/locus_tag="NMB0434"
/db_xref="GeneID:902550"
CDS 446966..448135
/locus_tag="NMB0434"
/note="identified by similarity to EGAD:91576; match to
protein family HMM PF04303; match to protein family HMM
TIGR02334"
/codon_start=1
/transl_table=11
/product="AcnD-accessory protein PrpF"
/protein_id="NP_273482.1"
/db_xref="GI:15676346"
/db_xref="GeneID:902550"
/translation="MPQIKIPAVYYRGGTSKGVFFKRSDLPEAAREAGSARDKILLRV
LGSPDPYGKQIDGLGNASSSTSKAVILDKSERADHDVDYLFGQVSIDKPFVDWSGNCG
NLTAAVGAFSIEQGLVDKGKIPSDGICTVKIWQKNIGKTIIAHVPMQNGAVLETGDFE
LDGVTFPAAEVQIEFLDPADGEGSMFPTGNLVDEIDVPNIGRLKATLINAGIPTVFLN
AADLGYTGKELQDDINNDAAALEKFEKIRAYGALKMGLISDVSEAAARAHTPKVAFVA
PAADYTASSGKTVNAADIDLLVRALSMGKLHHAMMGTASVAIATAAAVPGTLVNLAAG
GGTRKEVRFGHPSGTLRVGAAAECQDGQWTATKAVMSRSARVMMEGWVRVPEDCF"
misc_feature 446966..448132
/locus_tag="NMB0434"
/note="probable AcnD-accessory protein PrpF; Region: prpF;
TIGR02334"
/db_xref="CDD:131387"
gene 448549..449748
/gene="ackA-1"
/locus_tag="NMB0435"
/db_xref="GeneID:902551"
CDS 448549..449748
/gene="ackA-1"
/locus_tag="NMB0435"
/EC_number="2.7.2.1"
/note="AckA utilizes acetate and can acetylate CheY which
increases signal strength during flagellar rotation;
utilizes magnesium and ATP; also involved in conversion of
acetate to aceyl-CoA"
/codon_start=1
/transl_table=11
/product="acetate kinase"
/protein_id="NP_273483.1"
/db_xref="GI:15676347"
/db_xref="GeneID:902551"
/translation="MSDQLILVLNCGSSSLKGAVIDRKSGSVVLSCLGERLTTPEAVI
TFNKDGNKRQVPLSGRNCHAGAVGMLLNELEKHGLHDRIKAIGHRIAHGGEKYSESVL
IDQAVMDELNACIPLAPLHNPANISGILAAQEHFPGLPNVGVMDTSFHQTMPERAYTY
AVPRELRKKYAFRRYGFHGTSMRYVAPEAARILGKPLEDIRMIIAHLGNGASITAIKN
GKSVDTSMGFTPIEGLVMGTRCGDIDPGVYSYLTSHAGMDVAQVDEMLNKKSGLLGIS
ELSNDCRTLEIAADEGHEGARLALEVMTYRLAKYIASMAVGCGGVDALVFTGGIGENS
RNIRAKTVSYLDFLGLHIDTKANMEKRYGNSGIISPTDSSPAVLVVPTNEELMIACDT
AELAGIL"
misc_feature 448561..449742
/gene="ackA-1"
/locus_tag="NMB0435"
/note="propionate/acetate kinase; Provisional; Region:
PRK12379"
/db_xref="CDD:183484"
misc_feature 448561..449739
/gene="ackA-1"
/locus_tag="NMB0435"
/note="acetate kinase A/propionate kinase 2; Reviewed;
Region: PRK00180"
/db_xref="CDD:234680"
gene 450086..450727
/locus_tag="NMB0436"
/db_xref="GeneID:902552"
CDS 450086..450727
/locus_tag="NMB0436"
/note="identified by similarity to EGAD:28201; match to
protein family HMM PF01300; match to protein family HMM
TIGR00057"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273484.1"
/db_xref="GI:15676348"
/db_xref="GeneID:902552"
/translation="MTIRKQTMAQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSC
YALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAKVDNVQFRQLKAATPG
PYTFILQATKDVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEP
LTDPYEIRERLEHAVDLVIDGGWCGTEPTTVVDMTDGTELVRQGCGDTAVFGL"
misc_feature 450107..450718
/locus_tag="NMB0436"
/note="Telomere recombination; Region: Sua5_yciO_yrdC;
cl00305"
/db_xref="CDD:241768"
gene complement(450854..451297)
/locus_tag="NMB0437"
/db_xref="GeneID:902553"
CDS complement(450854..451297)
/locus_tag="NMB0437"
/note="identified by similarity to EGAD:9130; match to
protein family HMM PF02082; match to protein family HMM
TIGR00738"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273485.1"
/db_xref="GI:15676349"
/db_xref="GeneID:902553"
/translation="MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKV
VTALVKGGFLHSVRGKGGGLRLAAPPDRINIGSVVRHLEPMQLVECMGENNECLITPS
CRLTGILGGAMKSFFTYLDGFTLQDLLNKPTYDLLYEPRIPIAVQ"
misc_feature complement(450887..451297)
/locus_tag="NMB0437"
/note="Transcriptional regulator; Region: Rrf2; cl17282"
/db_xref="CDD:247836"
misc_feature complement(450908..451297)
/locus_tag="NMB0437"
/note="Rrf2 family protein; Region: rrf2_super; TIGR00738"
/db_xref="CDD:129821"
gene 451471..451839
/locus_tag="NMB0438"
/db_xref="GeneID:902554"
CDS 451471..451839
/locus_tag="NMB0438"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273486.1"
/db_xref="GI:15676350"
/db_xref="GeneID:902554"
/translation="MKPLKRHPALIGLSRDHHHSLSLCVRLLRTPEERHRDELEPHFS
ELETHFREEETKFAPIWQNVAPELKQRFEKDHARLRQMMASPEYGNAAWNTAFATTLR
DHARFEERELFPAAEPFLPA"
gene 451884..453038
/locus_tag="NMB0439"
/db_xref="GeneID:902555"
CDS 451884..453038
/locus_tag="NMB0439"
/note="identified by similarity to EGAD:148199; match to
protein family HMM PF05940"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273487.1"
/db_xref="GI:15676351"
/db_xref="GeneID:902555"
/translation="MKFTKHPVWAMAFRPFYSLAALYGALSVLLWGFGYTGTHELSGF
YWHAHEMIWGYAGLVVIAFLLTAVATWTGQPPTRGGVLVGLTIFWLAARIAAFIPGWG
ASASGILGTLFFWYGAVCMALPVIRSQNQRNYVAVFALFVLGGTHAAFHVQLHNGNLG
GLLSGLQSGLVMVSGFIGLIGTRIISFFTSKRLNVPQIPSPKWVAQASLWLPMLTAML
MAHGVLAWLSAVFAFAAGVIFTVQVYRWWYKPVLKEPMLWILFAGYLFTGLGLIAVGA
SYFKPAFLNLGVHLIGVGGIGVLTLGMMARTALGHTGNPIYPPPKAVPVAFWLMMAAT
AVRMVAVFSSGTAYTHSIRTSSVLFALALLVYAWKYIPWLIRPRSDGRPG"
misc_feature 451884..453032
/locus_tag="NMB0439"
/note="Uncharacterized protein involved in response to NO
[Inorganic ion transport and metabolism]; Region: NnrS;
COG3213"
/db_xref="CDD:225754"
gene complement(453095..453967)
/locus_tag="NMB0440"
/db_xref="GeneID:902556"
CDS complement(453095..453967)
/locus_tag="NMB0440"
/note="identified by similarity to EGAD:156224; match to
protein family HMM PF02153"
/codon_start=1
/transl_table=11
/product="prephenate dehydrogenase"
/protein_id="NP_273488.1"
/db_xref="GI:15676352"
/db_xref="GeneID:902556"
/translation="MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLER
ALERGVIDQASVAIDADSIGGADLVLIATPVATVPAILTALRPVLPEHTWISDVGSTK
SSVIEAFRRCLPDRLHHCIAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGI
ALVENLWHAVGAEIYTMDAQRHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAA
TGFRDFTRIASGHPAVWADICLANKDSLLQLVQGLGKQLDVLANILTTDDREALYRYF
EEAKTTRDRWLDGN"
misc_feature complement(453110..453964)
/locus_tag="NMB0440"
/note="Prephenate dehydrogenase [Amino acid transport and
metabolism]; Region: TyrA; COG0287"
/db_xref="CDD:223364"
misc_feature complement(453116..453949)
/locus_tag="NMB0440"
/note="prephenate dehydrogenase; Validated; Region:
PRK08507"
/db_xref="CDD:181452"
gene 454052..454864
/locus_tag="NMB0441"
/db_xref="GeneID:902557"
CDS 454052..454864
/locus_tag="NMB0441"
/note="identified by similarity to EGAD:47743; match to
protein family HMM PF00795"
/codon_start=1
/transl_table=11
/product="nitrilase"
/protein_id="NP_273489.1"
/db_xref="GI:15676353"
/db_xref="GeneID:902557"
/translation="MDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGADWVLLPEY
WVLMGANDTDKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSCEAGKVMNTLL
VYGRDGVRTGLYHKMHLFGFSGLGERYAEADTIRAGGDVPHLSAEGVPVAAGICYDVR
FPEFFRRQLPFDVLMLPAAFTHTTGKAHWELLLRARAVENQCYVVAAAQGGLHENGRR
TFGHSMIVDPWGDVLDVLPEGEGVVTADIDANRLNSVRNRLPALKYRVLDAV"
misc_feature 454058..454849
/locus_tag="NMB0441"
/note="Predicted amidohydrolase [General function
prediction only]; Region: COG0388"
/db_xref="CDD:223465"
misc_feature 454064..454846
/locus_tag="NMB0441"
/note="Nit1, Nit 2, and related proteins, and the
Nit1-like domain of NitFhit (class 10 nitrilases); Region:
nit; cd07572"
/db_xref="CDD:143596"
misc_feature order(454178..454180,454346..454348,454397..454399,
454409..454411,454442..454444,454517..454522,
454526..454531,454586..454588)
/locus_tag="NMB0441"
/note="putative active site [active]"
/db_xref="CDD:143596"
misc_feature order(454178..454180,454397..454399,454517..454519)
/locus_tag="NMB0441"
/note="catalytic triad [active]"
/db_xref="CDD:143596"
misc_feature order(454400..454405,454460..454468,454520..454522,
454529..454543,454547..454549,454610..454615,
454622..454627,454631..454639,454643..454648,
454736..454738,454826..454831,454838..454843)
/locus_tag="NMB0441"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143596"
gene complement(454893..455689)
/locus_tag="NMB0442"
/note="opacity protein, authentic frameshift; this gene
contains a frame shift which is not the result of
sequencing error; identified by similarity to EGAD:136899"
/pseudo
/db_xref="GeneID:902558"
gene 456464..457429
/locus_tag="NMB0443"
/db_xref="GeneID:902559"
CDS 456464..457429
/locus_tag="NMB0443"
/note="identified by similarity to EGAD:9780; match to
protein family HMM PF00665; match to protein family HMM
TIGR01199"
/codon_start=1
/transl_table=11
/product="IS30 family transposase"
/protein_id="NP_273490.1"
/db_xref="GI:15676354"
/db_xref="GeneID:902559"
/translation="MSYTQLTQGERYHIQYLSRHCTVTEIAKQLNRHKSTISREIRRH
RTQGQQYSAEKAQRQSQTIKQRKRQPYKLDSQLIQHIDPLIRRKLSPEQVCAYLRKHH
QITLHHSTIYRYLRQDKSNGSTLWQHLRICSKPYRKRYGSTWTRGKVPNRVGIENRPA
IVDQKSRIGDWEADTIVGKGQKSALLTLVERVTRYTIICKLDSLKAEDTARAAVRALK
AHKDRVHTITMDNGKEFYQHTKITKALKAETYFCRPYHSWEKGLNENTNGLIRQYFPK
QTDFRNISDREIRRVQDELNHRPRKTLGYETPSVLFLNLFQPLIH"
misc_feature 456464..457423
/locus_tag="NMB0443"
/note="Transposase and inactivated derivatives, IS30
family [DNA replication, recombination, and repair];
Region: Tra8; COG2826"
/db_xref="CDD:225382"
misc_feature 456467..456595
/locus_tag="NMB0443"
/note="Helix-turn-helix domain; Region: HTH_38; pfam13936"
/db_xref="CDD:206107"
misc_feature 456569..456808
/locus_tag="NMB0443"
/note="Homeodomain-like domain; Region: HTH_32; pfam13565"
/db_xref="CDD:222226"
misc_feature 456968..457285
/locus_tag="NMB0443"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
gene 457987..458841
/locus_tag="NMB0444"
/db_xref="GeneID:902560"
CDS 457987..458841
/locus_tag="NMB0444"
/note="identified by similarity to EGAD:107888; match to
protein family HMM PF00892"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273491.1"
/db_xref="GI:15676355"
/db_xref="GeneID:902560"
/translation="MFYQILALIIWSSSFIAAKYVYGGIDPALMVGVRLLIAALPALP
ACRRHVGKIPREEWKPLLIVSFVNYVLTLLLQFVGLKYTSAASASVIVGLEPLLMVFV
GHFFFNDKARAYHWICGAAAFAGVALLMAGGAEEGGEVGWFGCLLVLLAGAGFCAAMR
PTQRLIARIGAPAFTSVSIAAASLMCLPFSLALAQSYTVDWSVGMVLSLLYLGLGCGW
YAYWLWNKGMSRVPANVSGLLISLEPVVGVLLAVLILGEHLSPVSALGVFVVIAATLV
AGRLSHQK"
misc_feature 458011..458337
/locus_tag="NMB0444"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
misc_feature 458017..458811
/locus_tag="NMB0444"
/note="Carboxylate/Amino Acid/Amine Transporter; Region:
2A78; TIGR00950"
/db_xref="CDD:233205"
misc_feature 458470..458814
/locus_tag="NMB0444"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
gene 459360..460592
/locus_tag="NMB0445"
/db_xref="GeneID:902561"
CDS 459360..460592
/locus_tag="NMB0445"
/note="identified by similarity to EGAD:28252; match to
protein family HMM PF07690; match to protein family HMM
TIGR00710"
/codon_start=1
/transl_table=11
/product="bicyclomycin resistance protein"
/protein_id="NP_273492.1"
/db_xref="GI:15676356"
/db_xref="GeneID:902561"
/translation="MPSAHYPEMSEKLMAVLMAMLVTLMPFSIDAYLPAIPEMAQSLN
ADVHRIEQSLSLFMFGTAFGQVVGGSVSDIKGRKPVALTGLIVYCLAVAAIVFVSSAE
QLLNLRVVQAFGAGMTVVIVGAMVRDYYSGRKAAQMFALIGIILMVVPLVAPMVGALL
QGLGGWQAIFVFLAAYSLVLLGLVQYFLPKPAVGGKIGRDVFGLVAGRFKRVLKTRAA
MGYLFFQAFSFGSMFAFLTESSFVYQQLYRVTPHQYAWAFALNIITMMFFNRVTAWRL
KTGVHPQSILLWGIVVQFAANLSQLAAVLFFGLPPFWLLVACVMFSVGTQGLVGANTQ
ACFMSYFKEEGGSANAVLGVFQSLIGAGVGMAATFLHDGSATVMAATMTASTSCGIAL
LWLCSHRAWKENGQSEYL"
misc_feature 459435..460559
/locus_tag="NMB0445"
/note="bicyclomycin/multidrug efflux system; Provisional;
Region: PRK11102"
/db_xref="CDD:182964"
misc_feature 459438..460478
/locus_tag="NMB0445"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(459444..459446,459453..459461,459465..459470,
459519..459521,459528..459533,459540..459542,
459552..459557,459561..459566,459702..459707,
459714..459719,459726..459731,459738..459740,
459774..459779,459786..459791,459807..459809,
460044..460046,460053..460058,460065..460070,
460077..460079,460119..460121,460131..460133,
460143..460145,460152..460154,460164..460166,
460323..460325,460332..460337,460344..460346,
460356..460361,460368..460370,460401..460406,
460413..460418,460425..460430,460437..460439)
/locus_tag="NMB0445"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 460670..461758
/gene="pheA"
/locus_tag="NMB0446"
/db_xref="GeneID:902562"
CDS 460670..461758
/gene="pheA"
/locus_tag="NMB0446"
/EC_number="4.2.1.-"
/EC_number="5.4.99.5"
/note="identified by similarity to GP:4105530; match to
protein family HMM PF00800; match to protein family HMM
PF01817; match to protein family HMM PF01842; match to
protein family HMM TIGR01807"
/codon_start=1
/transl_table=11
/product="chorismate mutase"
/protein_id="NP_273493.1"
/db_xref="GI:15676357"
/db_xref="GeneID:902562"
/translation="MSQTIDELLLPHRNAIDTIDAEILRLLNERAQHAHAIGELKGTG
AVYRPEREVAVLRRIQDLNKGPLPDESVARLFREVMSECLAVERPLTIAYLGPQGTFT
QQAAIKHFGHAAHTMACPTIDDCFKQVETRQADYLVAPVENSTEGSVGRTLDLLAVTA
LQACGEIVLRIHHNLLRKNNGSTEGIAKVFSHAQALAQCNDWLGRHLPNAERIAVSSN
AEAARLVAESDDGTVAAIAGRTAAEIYGLDMVAECIEDEPNNTTRFLVMGHHETGASG
SDKTSLAVSAPNRAGAVASLLQPLTESGISMTKFESRPSKSVLWEYLFFIDIEGHRRD
AQIQTALERLGERASFVKVIGSYPTAVL"
misc_feature 460694..460909
/gene="pheA"
/locus_tag="NMB0446"
/note="chorismate mutase domain of proteobacterial
P-protein, clade 2; Region: CM_P2; TIGR01807"
/db_xref="CDD:130866"
misc_feature 460934..461755
/gene="pheA"
/locus_tag="NMB0446"
/note="Prephenate dehydratase [Amino acid transport and
metabolism]; Region: PheA; COG0077"
/db_xref="CDD:223155"
misc_feature 460943..461485
/gene="pheA"
/locus_tag="NMB0446"
/note="Prephenate dehydratase; Region: PDT; pfam00800"
/db_xref="CDD:216127"
misc_feature 461504..461743
/gene="pheA"
/locus_tag="NMB0446"
/note="C-terminal ACT domain of the bifunctional
chorismate mutase-prephenate dehydratase (CM-PDT) enzyme
and the prephenate dehydratase (PDT) enzyme; Region:
ACT_CM-PDT; cd04905"
/db_xref="CDD:153177"
misc_feature order(461540..461551,461600..461611)
/gene="pheA"
/locus_tag="NMB0446"
/note="putative L-Phe binding site [chemical binding];
other site"
/db_xref="CDD:153177"
gene 461795..462586
/gene="recO"
/locus_tag="NMB0447"
/db_xref="GeneID:902563"
CDS 461795..462586
/gene="recO"
/locus_tag="NMB0447"
/note="identified by similarity to EGAD:14344; match to
protein family HMM PF02565; match to protein family HMM
TIGR00613"
/codon_start=1
/transl_table=11
/product="DNA repair protein (recombination protein o)"
/protein_id="NP_273494.1"
/db_xref="GI:15676358"
/db_xref="GeneID:902563"
/translation="MSEYRVNHEPVFMLASSPWRESSLWVEAFSRRYGRVALLARSAR
KRQSELRGVLVPFVPVSVSWYGSQELKTLHRAEWVGGWRQPQGRALFGGLYVNELVLK
LTAREDPVPELYDALAEVMEAVCCKAAYIDDLRRFEWRLLNLLGVAPDLNRDGDGGTI
AAGGTYLVRPETAVFPVGKGFAVPPHAAGVVAPGQSLIDLREGSFRTAESLQQALKIT
RLFIRHLLPEGLKSRQVLEQIRQFDRKETARETVPTSDGTASNAV"
misc_feature 461795..462040
/gene="recO"
/locus_tag="NMB0447"
/note="Recombination protein O N terminal; Region: RecO_N;
pfam11967"
/db_xref="CDD:221346"
misc_feature 461798..462535
/gene="recO"
/locus_tag="NMB0447"
/note="Recombinational DNA repair protein (RecF pathway)
[DNA replication, recombination, and repair]; Region:
RecO; COG1381"
/db_xref="CDD:224299"
misc_feature 462044..462496
/gene="recO"
/locus_tag="NMB0447"
/note="Recombination protein O C terminal; Region: RecO_C;
pfam02565"
/db_xref="CDD:217107"
gene 462610..463338
/gene="pdxJ"
/locus_tag="NMB0448"
/db_xref="GeneID:902564"
CDS 462610..463338
/gene="pdxJ"
/locus_tag="NMB0448"
/note="involved in the de novo synthesis of pyridoxine
(Vitamin B6)"
/codon_start=1
/transl_table=11
/product="pyridoxine 5'-phosphate synthase"
/protein_id="NP_273495.1"
/db_xref="GI:15676359"
/db_xref="GeneID:902564"
/translation="MLLGVNIDHIATVRNARGTTYPSPVEAALVAETHGADLITMHLR
EDRRHIKDADVFAVKNAIRTRLNLEMALTEEMLENALKVMPEDVCIVPEKRQEITTEG
GLDVLAQQEKIAGFTKILTDAGIRVSLFIDADDRQIQAARDVGAPVVELHTGAYADAR
SHAEQIRQFERIQNGAHFAGDLGLVVNAGHGLTIHNVTPIAQILAIRELNIGHSLIAQ
ALFLGLPEAVRQMKEAMFRARLLP"
misc_feature 462613..463314
/gene="pdxJ"
/locus_tag="NMB0448"
/note="Pyridoxine 5'-phosphate (PNP) synthase domain;
pyridoxal 5'-phosphate is the active form of vitamin B6
that acts as an essential, ubiquitous coenzyme in amino
acid metabolism. In bacteria, formation of pyridoxine
5'-phosphate is a step in...; Region: PNPsynthase;
cd00003"
/db_xref="CDD:237977"
misc_feature order(462625..462627,462631..462636,462658..462660,
462733..462735,462739..462741,462751..462756,
462814..462816,462904..462909,462916..462918,
462997..462999,463057..463059,463177..463182,
463243..463248)
/gene="pdxJ"
/locus_tag="NMB0448"
/note="active site"
/db_xref="CDD:237977"
misc_feature order(462625..462627,462727..462729,462802..462804,
462808..462810,462814..462816,462868..462870,
462874..462876,462991..462993,462997..462999,
463051..463053,463057..463059,463168..463170,
463177..463179,463228..463233,463237..463239)
/gene="pdxJ"
/locus_tag="NMB0448"
/note="hydrophilic channel; other site"
/db_xref="CDD:237977"
misc_feature order(462658..462660,463078..463083)
/gene="pdxJ"
/locus_tag="NMB0448"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:237977"
misc_feature order(462733..462735,462814..462816,463057..463059,
463177..463179)
/gene="pdxJ"
/locus_tag="NMB0448"
/note="catalytic residues [active]"
/db_xref="CDD:237977"
misc_feature 462886..462918
/gene="pdxJ"
/locus_tag="NMB0448"
/note="active site lid [active]"
/db_xref="CDD:237977"
gene 463490..463714
/locus_tag="NMB0449"
/db_xref="GeneID:902565"
CDS 463490..463714
/locus_tag="NMB0449"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273496.1"
/db_xref="GI:15676360"
/db_xref="GeneID:902565"
/translation="MNQKYILSANNNSLIEEIHNTVQSIGYCIVRGLNLNHLDGSRRN
KKLFDFLSQLGMLTNHKGDGFKSIFWDIKY"
gene 463976..464422
/locus_tag="NMB0450"
/db_xref="GeneID:902566"
CDS 463976..464422
/locus_tag="NMB0450"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273497.1"
/db_xref="GI:15676361"
/db_xref="GeneID:902566"
/translation="MYVVKSANDGGNSLFLSSSDIVNQLSKTETGKKHLKTLTGNLYP
FKTPASFDKKQGVRWGNILSVNTQMIRFRSDCIYKGIEENRNKVSKEMVLALDYLINV
IKNASDIQEFSAQDDGLIIIDNVNGLHARTDYTDKNRHYIRARITV"
misc_feature <463985..464416
/locus_tag="NMB0450"
/note="Clavaminic acid synthetase (CAS) -like; CAS is a
trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase
carrying out three reactions in the biosynthesis of
clavulanic acid, an inhibitor of class A serine
beta-lactamases. In general, Fe(II)-2OG oxygenases...;
Region: CAS_like; cl00184"
/db_xref="CDD:241666"
misc_feature order(464012..464014,464360..464362,464390..464392)
/locus_tag="NMB0450"
/note="active site"
/db_xref="CDD:238154"
gene 464432..465199
/locus_tag="NMB0451"
/db_xref="GeneID:902567"
CDS 464432..465199
/locus_tag="NMB0451"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273498.1"
/db_xref="GI:15676362"
/db_xref="GeneID:902567"
/translation="MQEIMQSIVFVAAAILHGITGMGFPMLGTTALAFIMPLSKVVAL
VALPSLLMSLLVLCSNNKKGFWQEIVYYLKTYKLLAIGSVVGSILGVKLLLILPVSWL
LLLMAIITLYYSVNGILNVCAKAKNIQVVANNKNMVLFGFLAGIIGGSTNAMSPILLI
FLLSETENKNRIVKSSNLCYLLAKIVQIYMLRDQYWLLNKSEYGLIFLLSVLSVIGLY
VGIRLRTKISPNFFKMLIFIVLLVLALKIGHSGLIKL"
misc_feature 464453..465172
/locus_tag="NMB0451"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:216790"
gene 465399..465776
/gene="acpS"
/locus_tag="NMB0452"
/db_xref="GeneID:902568"
CDS 465399..465776
/gene="acpS"
/locus_tag="NMB0452"
/EC_number="2.7.8.7"
/note="Catalyzes the formation of holo-ACP, which mediates
the essential transfer of acyl fatty acid intermediates
during the biosynthesis of fatty acids and lipids"
/codon_start=1
/transl_table=11
/product="4'-phosphopantetheinyl transferase"
/protein_id="NP_273499.1"
/db_xref="GI:15676363"
/db_xref="GeneID:902568"
/translation="MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEELLEFPQAGK
PVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGHDALGKPEFFYGPALSKWLEEQG
ISRVSLSMSDEEDTVLAFVVAEK"
misc_feature 465399..465773
/gene="acpS"
/locus_tag="NMB0452"
/note="4'-phosphopantetheinyl transferase; Provisional;
Region: acpS; PRK00070"
/db_xref="CDD:234610"
gene 465858..466667
/gene="mutT"
/locus_tag="NMB0453"
/db_xref="GeneID:902569"
CDS 465858..466667
/gene="mutT"
/locus_tag="NMB0453"
/note="identified by similarity to EGAD:29393; match to
protein family HMM PF00293"
/codon_start=1
/transl_table=11
/product="mutT protein"
/protein_id="NP_273500.1"
/db_xref="GI:15676364"
/db_xref="GeneID:902569"
/translation="MIQDTRPLIRVVAGILLDSDGNYLLSSRPEGKPYAGYWEFAGGK
VEAGETDFQALQREFEEELGIRILAATPWLTKIHSYEHARVCLKFLWVNPDQWTGKPQ
SREGQEWSWQKAGDFTVAPMLPANGALLRSLSVPRRLYGSLKTGLHGENSMGAYRVLP
LGSAEGSGANVLMEAAQWQDRPEHADSVWMVVQTREQWRRAQEKGADAVVWRVCDDVQ
AQEAAEALRQGVSVPLVLAANGQTVARYGKLWLGLGAHVVVRDETIGKNHE"
misc_feature 465882..466256
/gene="mutT"
/locus_tag="NMB0453"
/note="The MutT pyrophosphohydrolase is a prototypical
Nudix hydrolase that catalyzes the hydrolysis of
nucleoside and deoxynucleoside triphosphates (NTPs and
dNTPs) by substitution at a beta-phosphorus to yield a
nucleotide monophosphate (NMP) and inorganic...; Region:
MutT_pyrophosphohydrolase; cd03425"
/db_xref="CDD:239517"
misc_feature order(465882..465884,465888..465890,465984..465989,
465993..465995,466029..466031,466038..466043,
466110..466112,466170..466172,466233..466235)
/gene="mutT"
/locus_tag="NMB0453"
/note="active site"
/db_xref="CDD:239517"
misc_feature order(465882..465884,465888..465890,465984..465989,
466104..466106,466110..466112,466233..466235)
/gene="mutT"
/locus_tag="NMB0453"
/note="8-oxo-dGMP binding site [chemical binding]; other
site"
/db_xref="CDD:239517"
misc_feature 465984..466052
/gene="mutT"
/locus_tag="NMB0453"
/note="nudix motif; other site"
/db_xref="CDD:239517"
misc_feature order(466029..466031,466038..466043)
/gene="mutT"
/locus_tag="NMB0453"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:239517"
misc_feature <466419..>466622
/gene="mutT"
/locus_tag="NMB0453"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl17186"
/db_xref="CDD:247740"
gene 466660..467082
/locus_tag="NMB0454"
/db_xref="GeneID:902570"
CDS 466660..467082
/locus_tag="NMB0454"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273501.1"
/db_xref="GI:15676365"
/db_xref="GeneID:902570"
/translation="MNKNRKLLLAALLLIAFAAVKLVLLQWWQAQQPQAVAAQCDLTE
GCTLPDGSRVRAAAVSTKKPFDIYIEHAPAGTEQVSISFSMKNMDMGFNRYMFERQPS
GTWQAVRIRLPICVEGRRDFTADITIGSRTFQTAFTAE"
gene 467131..468273
/locus_tag="NMB0455"
/db_xref="GeneID:902571"
CDS 467131..468273
/locus_tag="NMB0455"
/note="identified by similarity to EGAD:48783; match to
protein family HMM PF01170; match to protein family HMM
PF02926"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273502.1"
/db_xref="GI:15676366"
/db_xref="GeneID:902571"
/translation="MNTLYTLFATCPRGLETVLSQELESLGCTDVQVFDGGVSCRGGL
EQVYAANLHSRTASRILLRLTKGTYRNERDIYKLAKNINWFNWFTLQQTFKVKVEAKR
ANVKSIQFVGLTVKDAVCDAFRDIYDARPSVDKAAPDVRIHAFLNERNVEIFIDTSGE
ALFKRGYRLDTGEAPLRENLAAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAWIAARRA
PGMMRRFGFEKLQNFDKTLWSDLRRRAEAQTRPVRAPIAGSDNDRRIVQTALDNARRA
GVDDIVSFSVADAQSVRPNGENGIMVSNPPYGVRLEEVRALQALYPQLGTWLKKHYAG
WLAAMFTGDREMPKFMCLSPKRKIPLYNGNIDCRLFLIDMVEGSNR"
misc_feature 467137..468255
/locus_tag="NMB0455"
/note="Predicted N6-adenine-specific DNA methylase [DNA
replication, recombination, and repair]; Region: COG0116"
/db_xref="CDD:223194"
misc_feature 467149..467607
/locus_tag="NMB0455"
/note="THUMP domain associated with
S-adenosylmethionine-dependent methyltransferases; Region:
THUMP_AdoMetMT; cd11715"
/db_xref="CDD:212584"
misc_feature 467623..468240
/locus_tag="NMB0455"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl17173"
/db_xref="CDD:247727"
gene complement(468331..469581)
/gene="amiC"
/locus_tag="NMB0456"
/db_xref="GeneID:902572"
CDS complement(468331..469581)
/gene="amiC"
/locus_tag="NMB0456"
/EC_number="3.5.1.28"
/note="identified by similarity to EGAD:36618; match to
protein family HMM PF01520"
/codon_start=1
/transl_table=11
/product="N-acetylmuramoyl-L-alanine amidase"
/protein_id="NP_273503.1"
/db_xref="GI:15676367"
/db_xref="GeneID:902572"
/translation="MIKLTRRQIIRRTAGTLFALSPIASAVAKTVRAPQFTAARIWPS
HTYTRLTLESTAALKYQHFTLDNPGRLVVDIQNANINTVLHGLSQKVMADDPFIRSIR
AGQNTPTTVRLVIDLKQPTHAQVFALPPVGGFKNRLVVDLYPHGMDADDPMMALLNGS
LNKTLRGSPEADLAQNTTPQPGRGRNGRRPVIMLDPGHGGEDPGAISPGGLQEKHVVL
SIARETKNQLEALGYNVFMTRNEDVFIPLGVRVAKGRARRADVFVSIHADAFTSPSAR
GTGVYMLNTKGATSSAAKFLEQTQNNADAVGGVPTSGNRNVDTALLDMTQTATLRDSR
KLGKLVLEELGRLNHLHKGRVDEANFAVLRAPDMPSILVETAFLSNPAEEKLLGSESF
RRQCAQSIASGVQRYINTSVLKRG"
misc_feature complement(469156..469464)
/gene="amiC"
/locus_tag="NMB0456"
/note="AMIN domain; Region: AMIN; pfam11741"
/db_xref="CDD:221199"
misc_feature complement(468352..469248)
/gene="amiC"
/locus_tag="NMB0456"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:223929"
misc_feature complement(468367..469011)
/gene="amiC"
/locus_tag="NMB0456"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature complement(order(468460..468462,468784..468786,
468943..468945,468988..468990))
/gene="amiC"
/locus_tag="NMB0456"
/note="active site"
/db_xref="CDD:119407"
misc_feature complement(order(468784..468786,468943..468945,
468988..468990))
/gene="amiC"
/locus_tag="NMB0456"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
gene complement(469578..470039)
/locus_tag="NMB0457"
/db_xref="GeneID:902573"
CDS complement(469578..470039)
/locus_tag="NMB0457"
/note="identified by similarity to EGAD:8343; match to
protein family HMM PF02367; match to protein family HMM
TIGR00150"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273504.1"
/db_xref="GI:15676368"
/db_xref="GeneID:902573"
/translation="MSDLPSISRFLADEAATLDLGAAWSSRLNAPLVIYLEGDLGAGK
TTLTRGILRGLGHQGAVKSPTYAIVESYPLERFTLHHFDLYRFSFPEEWEDAGLDELF
AANSVCLIEWPQQGGEFTPPADITATLTHDGDGRKCLLTAHTERGRESLPL"
misc_feature complement(469584..470021)
/locus_tag="NMB0457"
/note="Predicted ATPase or kinase [General function
prediction only]; Region: COG0802"
/db_xref="CDD:223873"
gene 470241..471053
/gene="murI"
/locus_tag="NMB0458"
/db_xref="GeneID:902574"
CDS 470241..471053
/gene="murI"
/locus_tag="NMB0458"
/EC_number="5.1.1.3"
/note="converts L-glutamate to D-glutamate, a component of
peptidoglycan"
/codon_start=1
/transl_table=11
/product="glutamate racemase"
/protein_id="NP_273505.1"
/db_xref="GI:15676369"
/db_xref="GeneID:902574"
/translation="MENIGRQRPIGVFDSGIGGLTNVRALMERLPMENIIYFGDTARV
PYGTKSKATIENFSMQIVDFLLEHDVKAMVIACNTIAAVAGQKIRQKTGNMPVLDVIS
AGAKAALATTRNNKIGIIATNTTVNSNAYARAIHRNNPDTLVRTQAAPLLVPLVEEGW
LEHEVTRLTVCEYLKPLLADGIDTLVLGCTHFPLLKPLIGREAGNVALVDSAITTAEE
TARVLAQEGLLNTDNNNPDYRFYVSDIPLKFRTIGERFLGRTMEQIEMVSLG"
misc_feature 470247..471035
/gene="murI"
/locus_tag="NMB0458"
/note="glutamate racemase; Provisional; Region: PRK00865"
/db_xref="CDD:234851"
gene complement(472101..473210)
/locus_tag="NMB0459"
/db_xref="GeneID:902575"
CDS complement(472101..473210)
/locus_tag="NMB0459"
/note="identified by similarity to EGAD:156656; match to
protein family HMM PF02661"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273506.1"
/db_xref="GI:15676370"
/db_xref="GeneID:902575"
/translation="MSNWKPNIPYNDLPPLPPKQDIESKTILKRCIAARASLARLKQA
AELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQYRT
ALFAGYESLTSRPLCTQTAIMVCNAIKHPYEMAIRKTGGTALKGGNSGNVVYTPPEGE
ETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRILNSLLLIEK
GLLDLPILYLSRYIIENRADYYRLLLGVTERQDWESWIIYILDGVADTADWTVSKIDA
IRRLFEQTRQHIRTHAQGIYTHELVNLLFEQPYTRIANLEAAGIAKRQTASKYLKELS
DIGVLQEIVIGRDKLFIHPRLMELLRGEGNSFTSF"
misc_feature complement(472155..473186)
/locus_tag="NMB0459"
/note="Fic family protein [Function unknown]; Region:
COG3177"
/db_xref="CDD:225718"
misc_feature complement(472881..473132)
/locus_tag="NMB0459"
/note="Fic/DOC family N-terminal; Region: Fic_N;
pfam13784"
/db_xref="CDD:205957"
misc_feature complement(472566..>472760)
/locus_tag="NMB0459"
/note="Fic/DOC family; Region: Fic; pfam02661"
/db_xref="CDD:217170"
gene 475581..477719
/gene="tbp2"
/locus_tag="NMB0460"
/db_xref="GeneID:902576"
CDS 475581..477719
/gene="tbp2"
/locus_tag="NMB0460"
/note="identified by similarity to EGAD:40649; match to
protein family HMM PF01298"
/codon_start=1
/transl_table=11
/product="transferrin-binding protein B"
/protein_id="NP_273507.1"
/db_xref="GI:15676371"
/db_xref="GeneID:902576"
/translation="MNNPLVNQAAMVLPVFLLSACLGGGGSFDLDSVDTEAPRPAPKY
QDVFSEKPQAQKDQGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPK
RQKSVIEKVETDSDNNIYSSPYLKPSNHQNGNTGNGINQPKNQAKDYENFKYVYSGWF
YKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQ
KFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLT
GKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSS
SLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDKPANGNTAAASGGTDAAASNGAA
GTSSENGKLTTVLDAVELKLGDKEVQKLDNFSNAAQLVVDGIMIPLLPEASESGNNQA
NQGTNGGTAFTRKFDHTPESDKKDAQAGTQTNGAQTASNTAGDTNGKTKTYEVEVCCS
NLNYLKYGMLTRKNSKSAMQAGESSSQADAKTEQVEQSMFLQGERTDEKEIPSEQNIV
YRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTID
GNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYP
GDKQTKNATNASGNSSATVVFGAKRQQPVR"
misc_feature 475662..477704
/gene="tbp2"
/locus_tag="NMB0460"
/note="Transferrin binding protein-like solute binding
protein; Region: Lipoprotein_5; pfam01298"
/db_xref="CDD:216420"
gene 477806..480553
/gene="tbp1"
/locus_tag="NMB0461"
/db_xref="GeneID:902577"
CDS 477806..480553
/gene="tbp1"
/locus_tag="NMB0461"
/note="identified by similarity to EGAD:145507; match to
protein family HMM PF00593; match to protein family HMM
PF07715; match to protein family HMM TIGR01776; match to
protein family HMM TIGR01786"
/codon_start=1
/transl_table=11
/product="transferrin-binding protein 1"
/protein_id="NP_273508.1"
/db_xref="GI:15676372"
/db_xref="GeneID:902577"
/translation="MQQQHLFRFNILCLSLMTALPAYAENVQAGQAQEKQLDTIQVKA
KKQKTRRDNEVTGLGKLVKSSDTLSKEQVLNIRDLTRYDPGIAVVEQGRGASSGYSIR
GMDKNRVSLTVDGVSQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSV
EQGSGALAGSVAFQTKTADDVIGEGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEA
LLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSNYAYFIVKEECKNGSYETCKANP
KKDVVGKDERQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFENKRHYIGGILEHT
QQTFDTRDMTVPAFLTKAVFDANKKQAGSLPGNGKYAGNHKYGGLFTNGENGALVGAE
YGTGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGIGLDNHFQQTHCSADG
SDKYCRPSADKPFSYYKSDRVIYGESHRLLQAAFKKSFDTAKIRHNLSVNLGFDRFGS
NLRHQDYYYQHANRAYSSNTPPQNNGKKISPNGSETSPYWVTIGRGNVVTGQICRLGN
NTYTDCTPRSINGKSYYAAVRDNVRLGRWADVGAGLRYDYRSTHSDDGSVSTGTHRTL
SWNAGIVLKPTDWLDLTYRTSTGFRLPSFAEMYGWRAGVQSKAVKIDPEKSFNKEAGI
VFKGDFGNLEASWFNNAYRDLIVRGYEAQIKDGKEEAKGDPAYLNAQSARITGINILG
KIDWNGVWDKLPEGWYSTFAYNRVRVRDIKKRADRTDIQSHLFDAIQPSRYVVGLGYD
QPEGKWGVNGMLTYSKAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYYTV
KKHFTLRAGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLEMK
F"
misc_feature 477806..480550
/gene="tbp1"
/locus_tag="NMB0461"
/note="TonB-dependent lactoferrin and transferrin
receptors; Region: TonB-tbp-lbp; TIGR01776"
/db_xref="CDD:233569"
misc_feature 477995..>478540
/gene="tbp1"
/locus_tag="NMB0461"
/note="Porin superfamily. These outer membrane channels
share a beta-barrel structure that differ in strand and
shear number. Classical (gram-negative ) porins are
non-specific channels for small hydrophillic molecules and
form 16 beta-stranded barrels (16,20)...; Region:
OM_channels; cl17244"
/db_xref="CDD:247798"
misc_feature <479534..480550
/gene="tbp1"
/locus_tag="NMB0461"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:238657"
gene complement(481824..483203)
/gene="potD-1"
/locus_tag="NMB0462"
/db_xref="GeneID:902578"
CDS complement(481824..483203)
/gene="potD-1"
/locus_tag="NMB0462"
/note="identified by similarity to EGAD:21832; match to
protein family HMM PF01547"
/codon_start=1
/transl_table=11
/product="spermidine/putrescine ABC transporter
substrate-binding protein"
/protein_id="NP_273509.1"
/db_xref="GI:15676373"
/db_xref="GeneID:902578"
/translation="MQAFSLYPPVGHPDSAKKRQNRADVFLPFWKQDNFLGKSVQYRF
EFAQIYFTMPKPCAGVTMGRGDFFFSNLFHQESARMKKSVLAVLAALSLAACGGSEKN
AVQPQADAASAANAEAAATDTLNIYNWSNYVDESTVEDFKKANNLKLTYDLYENNETL
EAKMLTGKSGYDLVVPGIAFLPRQIEAGAYQKVNKDLIPNYKNIDPELLKMLETADPG
NQYAVPYFSGVNTIAITAKGKELLGGKLPENGWDLLFKPEYTHKLKSCGIALWDTPSE
MFPILLNYLGKDPKGSNPEDLKAAAEVLKSIRPDVKRFSPSIIDELARGDICLAAGNG
GDLNLAKARSEEVKNNVGIEVLTPKGMGFWIESWLIPADAKNVANAHKYINYTLDPEI
AAKNGIAVTFAPASKPAREKMPAELVNTRSIFPNEQDMKDGFVMPQMSTDAKKLSVSL
WQKIKVGTN"
misc_feature complement(481830..482843)
/gene="potD-1"
/locus_tag="NMB0462"
/note="Spermidine/putrescine-binding periplasmic protein
[Amino acid transport and metabolism]; Region: PotD;
COG0687"
/db_xref="CDD:223759"
misc_feature complement(482022..482693)
/gene="potD-1"
/locus_tag="NMB0462"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; cl17199"
/db_xref="CDD:247753"
gene 483269..483532
/gene="rpsT"
/locus_tag="NMB0463"
/db_xref="GeneID:902579"
CDS 483269..483532
/gene="rpsT"
/locus_tag="NMB0463"
/note="binds directly to the 16S rRNA and is involved in
post-translational inhibition of arginine and ornithine
decarboxylase"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="NP_273510.1"
/db_xref="GI:15676374"
/db_xref="GeneID:902579"
/translation="MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDK
AAAQAVYQESVKVIDRIADKGVFHKNKAARHKSRLSAKVKALA"
misc_feature 483269..483529
/gene="rpsT"
/locus_tag="NMB0463"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene 483693..484841
/locus_tag="NMB0464"
/db_xref="GeneID:902580"
CDS 483693..484841
/locus_tag="NMB0464"
/note="identified by similarity to EGAD:20225; match to
protein family HMM PF02253"
/codon_start=1
/transl_table=11
/product="phospholipase A1"
/protein_id="NP_273511.1"
/db_xref="GI:15676375"
/db_xref="GeneID:902580"
/translation="MPTMGAEMNTRNMRYILLTGLLPMASAFGETALQCAALTDNVTR
LACYDRIFAAQLPSSAGQEGQESKAVLNLTETVRSSLDKGEAVIVVEKGGDALPADSA
GETADIYTPLSLMYDLDKNDLRGLLGVREHNPMYLMPLWYNNSPNYAPGSPTRGTTVQ
EKFGQQKRAETKLQVSFKSKIAEDLFKTRADLWFGYTQRSDWQIYNQGRKSAPFRNTD
YKPEIFLTQPVKADLPFGGRLRMLGAGFVHQSNGQSRPESRSWNRIYAMAGMEWGKLT
VIPRVWVRAFDQSGDKNDNPDIADYMGYGDVKLQYRLNDRQNVYSVLRYNPKTGYGAI
EAAYTFPIKGKLKGVVRGFHGYGESLIDYNHKQNGIGIGLMFNDLDGI"
misc_feature 483777..>483890
/locus_tag="NMB0464"
/note="Protein of unknown function (DUF3121); Region:
DUF3121; cl11879"
/db_xref="CDD:245793"
misc_feature 484098..484805
/locus_tag="NMB0464"
/note="The outer membrane phospholipase A (OMPLA) is an
integral membrane enzyme that catalyses the hydrolysis of
acylester bonds in phospholipids using calcium as a
cofactor. The enzyme has a fold of transmembrane
beta-barrels and is widespread among...; Region: OMPLA;
cd00541"
/db_xref="CDD:238302"
misc_feature order(484104..484106,484215..484217,484221..484223,
484284..484286,484332..484334)
/locus_tag="NMB0464"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238302"
misc_feature order(484128..484130,484215..484217,484221..484223,
484227..484229,484233..484235,484278..484280,
484296..484298,484323..484325,484332..484334,
484434..484436,484440..484442,484446..484448,
484728..484730)
/locus_tag="NMB0464"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238302"
misc_feature order(484434..484436,484440..484442,484476..484478)
/locus_tag="NMB0464"
/note="active site"
/db_xref="CDD:238302"
misc_feature order(484455..484457,484464..484466,484572..484574)
/locus_tag="NMB0464"
/note="calcium binding site [ion binding]; other site"
/db_xref="CDD:238302"
gene 484984..485685
/locus_tag="NMB0465"
/db_xref="GeneID:902581"
CDS 484984..485685
/locus_tag="NMB0465"
/note="identified by similarity to EGAD:163702; match to
protein family HMM PF04367"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_273512.1"
/db_xref="GI:15676376"
/db_xref="GeneID:902581"
/translation="MTEPAAEGGKAAKALKKYLITGILVWLPIAVTVWVVSYIVSASD
QLVNLLPKQWRPQYVLGFNIPGLGVIVAIAVLFVTGLFAANVLGRQILAAWDSLLGRI
PVVKSIYSSVKKVSESLLSDSSRSFKTPVLVPFPQPGIWTIAFVSGQVSNAVKAALPK
DGDYLSVYVPTTPNPTGGYYIMVKKSDVRELDMSVDEALKYVISLGMVIPDDLPVKTL
AGPMPSEKADLPEQQ"
misc_feature 485035..485640
/locus_tag="NMB0465"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2928"
/db_xref="CDD:225480"
gene 485743..487551
/gene="aspS"
/locus_tag="NMB0466"
/db_xref="GeneID:902582"
CDS 485743. 