LOCUS NC_007907 5727534 bp DNA circular CON 10-JUN-2013
DEFINITION Desulfitobacterium hafniense Y51 chromosome, complete genome.
ACCESSION NC_007907
VERSION NC_007907.1 GI:89892746
DBLINK Project: 58605
BioProject: PRJNA58605
KEYWORDS .
SOURCE Desulfitobacterium hafniense Y51
ORGANISM Desulfitobacterium hafniense Y51
Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
Desulfitobacterium.
REFERENCE 1
AUTHORS Nonaka,H., Keresztes,G., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K.,
Inatomi,K., Furukawa,K., Inui,M. and Yukawa,H.
TITLE Complete Genome Sequence of the Dehalorespiring Bacterium
Desulfitobacterium hafniense Y51 and Comparison with
Dehalococcoides ethenogenes 195
JOURNAL J. Bacteriol. 188 (6), 2262-2274 (2006)
PUBMED 16513756
REFERENCE 2 (bases 1 to 5727534)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5727534)
AUTHORS Nonaka,H., Shinoda,Y., Keresztes,G., Ikenaga,Y., Abe,M., Naito,K.,
Inatomi,K., Furukawa,K., Inui,M. and Yukawa,H.
TITLE Direct Submission
JOURNAL Submitted (10-DEC-2004) Hiroshi Nonaka, Research Institute of
Innovative Technology for the Earth (RITE), Microbiology research
group; 9-2 Kizugawadai Kizu-cho, Soraku-gun, Kyoto 619-0292, Japan
(E-mail:nonaka@rite.or.jp, Tel:81-774-75-2308, Fax:81-774-75-2321)
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AP008230.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..5727534
/organism="Desulfitobacterium hafniense Y51"
/mol_type="genomic DNA"
/strain="Y51"
/db_xref="taxon:138119"
gene 1..1350
/gene="dnaA"
/locus_tag="DSY0001"
/db_xref="GeneID:3958162"
CDS 1..1350
/gene="dnaA"
/locus_tag="DSY0001"
/note="similarity to COG0593 ATPase involved in DNA
replication initiation(Evalue: 1E-162)"
/codon_start=1
/transl_table=11
/product="DNA replication initiation ATPase"
/protein_id="YP_516234.1"
/db_xref="GI:89892747"
/db_xref="GeneID:3958162"
/translation="MPPRSLQVLWQETLSKLENELSKPSFETWLSSTYLLDIEGDTLI
VSVPNEFAKDWLESRYAPIIRSTVQSILGQSMNLRFLVTSIHETTQPGDNQNKASSNS
KAEPADNKTLNSKYTFDTFVIGNSNRFAHAAALAVAESPALAYNPLFIYGGVGLGKTH
LMHAIGNAVIQRSPSTRVLYVSSEKFTNELIESIRDQNPIEFRNHYRNVDILLIDDIQ
FLAGKEGTQEEFFHTFNALHDANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQP
PDLETRIAILRKKAKLENLQVANEVMVYIADKIHSNIRELEGALIRVMAVGSLTSNPI
TVETAAEALKDIIPVSTPKEITIEMIQQAVADFYHLSLGEFKAKKRTRAVAFPRQIAM
YLSRELTDNSLPRIGDEFGGRDHTTVLHAYDKISESRQNDPLLDRKINEIIQMIQSL"
misc_feature 13..1344
/gene="dnaA"
/locus_tag="DSY0001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:234667"
misc_feature 19..210
/gene="dnaA"
/locus_tag="DSY0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:221153"
misc_feature 433..810
/gene="dnaA"
/locus_tag="DSY0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 454..477
/gene="dnaA"
/locus_tag="DSY0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(457..480,643..645,745..747)
/gene="dnaA"
/locus_tag="DSY0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 631..648
/gene="dnaA"
/locus_tag="DSY0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 781..783
/gene="dnaA"
/locus_tag="DSY0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1069..1338
/gene="dnaA"
/locus_tag="DSY0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1138..1140,1162..1167,1186..1188,1204..1212,
1237..1251,1258..1260,1267..1272)
/gene="dnaA"
/locus_tag="DSY0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1552..2709
/gene="dnaN"
/locus_tag="DSY0002"
/db_xref="GeneID:3958163"
CDS 1552..2709
/gene="dnaN"
/locus_tag="DSY0002"
/EC_number="2.7.7.7"
/note="similarity to COG0592 DNA polymerase sliding clamp
subunit (PCNA homolog)(Evalue: 1E-65)"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_516235.1"
/db_xref="GI:89892748"
/db_xref="GeneID:3958163"
/translation="MFPAKYSTVDKFFEEAAFMKIYCSKDSLITGVNTVQKAVSNKNT
LPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQVEKEGVVVLPSRLFSDLVRKLPDV
LIELELQNDVINIHYNESDLSLRGYDPEEFPLLPDLFDAETFNLPVSIFKTMIKQTIF
ACSAEESRPVFTGCLLQIEDGSLRLIATDTHRLAYRIAEISNPEQIKFQGIIPAKTLG
EIYRLLRDEDENLFIRFNQAQIVFQFGAVHLLSRLIEGQFPNYKQVIPQSCQTKVLLS
ARLFQDSVERASLLARDGSHTSIIKLSVDTERLSIDQTSELGKISEQMEVKKEGNDVK
IAFNSKFLLDVLKIIDSEEIVFELSGSYSPGIIRPVDDPNYLYLALPVRTS"
misc_feature 1606..2703
/gene="dnaN"
/locus_tag="DSY0002"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:235541"
misc_feature 1606..2700
/gene="dnaN"
/locus_tag="DSY0002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:238082"
misc_feature order(1675..1677,1819..1821,1840..1842,2194..2196)
/gene="dnaN"
/locus_tag="DSY0002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:238082"
misc_feature order(1822..1824,1831..1833,1906..1908,1912..1914,
2416..2418,2512..2517)
/gene="dnaN"
/locus_tag="DSY0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238082"
misc_feature order(2113..2115,2119..2130,2563..2565,2689..2700)
/gene="dnaN"
/locus_tag="DSY0002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:238082"
misc_feature order(2113..2115,2119..2124,2341..2343,2452..2454,
2488..2493,2572..2574,2689..2700)
/gene="dnaN"
/locus_tag="DSY0002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:238082"
gene 2724..3821
/gene="recF"
/locus_tag="DSY0003"
/db_xref="GeneID:3958251"
CDS 2724..3821
/gene="recF"
/locus_tag="DSY0003"
/note="similarity to COG1195 Recombinational DNA repair
ATPase (RecF pathway)(Evalue: 5E-75)"
/codon_start=1
/transl_table=11
/product="DNA replication and repair protein RecF"
/protein_id="YP_516236.1"
/db_xref="GI:89892749"
/db_xref="GeneID:3958251"
/translation="MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIY
YLLTGKSYRVHREQELARWGENEFHLYGDFIVQRRKLRLESHYQDKRKIIKINQIPCR
KLSEYVGTINVVFFSPDDLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQK
NALLKQGQGGSKSQIAQIELWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGK
EELTMDYHALGKNNLEEALAAFPKLLAEKMSLEMERKMVLIGPHRDDILFKLNERSAR
LYGSQGQQRSIVLSTKLAELEVIRQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSLQ
QTIMTMTSAETLTQRASLLLKVEKGQIGRIE"
misc_feature 2724..3806
/gene="recF"
/locus_tag="DSY0003"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:234608"
misc_feature 2730..>3218
/gene="recF"
/locus_tag="DSY0003"
/note="ATP-binding cassette domain of RecF; Region:
ABC_RecF; cd03242"
/db_xref="CDD:213209"
misc_feature 2811..2834
/gene="recF"
/locus_tag="DSY0003"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213209"
misc_feature order(2820..2825,2829..2837,3024..3026)
/gene="recF"
/locus_tag="DSY0003"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213209"
misc_feature 3015..3026
/gene="recF"
/locus_tag="DSY0003"
/note="Q-loop/lid; other site"
/db_xref="CDD:213209"
misc_feature <3480..3806
/gene="recF"
/locus_tag="DSY0003"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 3558..3587
/gene="recF"
/locus_tag="DSY0003"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 3645..3662
/gene="recF"
/locus_tag="DSY0003"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 3669..3680
/gene="recF"
/locus_tag="DSY0003"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 3735..3752
/gene="recF"
/locus_tag="DSY0003"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 3825..4082
/locus_tag="DSY0004"
/db_xref="GeneID:3953694"
CDS 3825..4082
/locus_tag="DSY0004"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516237.1"
/db_xref="GI:89892750"
/db_xref="GeneID:3953694"
/translation="MFLHLGGDILINQEKIIAILDLETAMRNSTSENFLNKIKEKQKI
NYISEKGKEKSLIIASDGNYFSPISSSTLLKRSSSAIIGEE"
gene 4234..6168
/gene="gyrB"
/locus_tag="DSY0005"
/db_xref="GeneID:3958176"
CDS 4234..6168
/gene="gyrB"
/locus_tag="DSY0005"
/EC_number="5.99.1.3"
/note="similarity to COG0187 DNA gyrase (topoisomerase II)
B subunit(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_516238.1"
/db_xref="GI:89892751"
/db_xref="GeneID:3958176"
/translation="MQEKAEIKETIPTNDYNAGQIEVLEGLEAVRKRPGMYIGSTSLR
GLHHLVYEIVDNSIDEALAGYCDTIEVTIHKDNSISVVDNGRGIPVDIHPKLGKPAVE
VALTVLHAGGKFSGSAYKVSGGLHGVGMSVVNALSTWLHVEVRKDGNIYHQEFMRGKT
KTELAVIGQVDPNQTGTTITFSPDPEIFEDTVFLFDTLAHRLRELSFLNKKVSITLID
AREDKKEVYYHTGGIYDFVKYINRSKESLHPEPIYFEAEKDGVQVEVSMQYNDGYVEN
LFSYANNIHTHEGGTHESGFKAALTRVANDYARKNNILKANEANLSGEDIREGLTAVI
SVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSAFFEENPAIGKKVIEKSIQASRA
REAARKARELTRRKSALEVSALPGKLADCSWKEAELCEMYIVEGDSAGGSAKQGRDRR
FQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGISEDFDIEKARYHKLVIMTD
ADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKKGKDIHYVYSNEELAKLQ
DEIGRDRVEIQRYKGLGEMNAEQLWETTMDPAKRTILQVTMEDAIKADELFTILMGDV
VEPRREFIQDNAQYVRNLDV"
misc_feature 4270..6165
/gene="gyrB"
/locus_tag="DSY0005"
/note="DNA gyrase subunit B; Validated; Region: gyrB;
PRK05644"
/db_xref="CDD:235542"
misc_feature 4369..4677
/gene="gyrB"
/locus_tag="DSY0005"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(4387..4389,4399..4401,4408..4410,4474..4476,
4480..4482,4486..4488,4492..4497,4612..4623,4657..4659,
4663..4665)
/gene="gyrB"
/locus_tag="DSY0005"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 4399..4401
/gene="gyrB"
/locus_tag="DSY0005"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(4486..4488,4492..4494,4612..4614,4618..4620)
/gene="gyrB"
/locus_tag="DSY0005"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 4924..5397
/gene="gyrB"
/locus_tag="DSY0005"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:238419"
misc_feature 5077..5079
/gene="gyrB"
/locus_tag="DSY0005"
/note="anchoring element; other site"
/db_xref="CDD:238419"
misc_feature order(5251..5253,5260..5265,5269..5271)
/gene="gyrB"
/locus_tag="DSY0005"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238419"
misc_feature order(5269..5271,5275..5277)
/gene="gyrB"
/locus_tag="DSY0005"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238419"
misc_feature 5518..5859
/gene="gyrB"
/locus_tag="DSY0005"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(5536..5541,5548..5550,5755..5757,5761..5763,
5767..5769)
/gene="gyrB"
/locus_tag="DSY0005"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(5536..5538,5755..5757)
/gene="gyrB"
/locus_tag="DSY0005"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 5941..6132
/gene="gyrB"
/locus_tag="DSY0005"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 6182..8668
/gene="gyrA"
/locus_tag="DSY0006"
/db_xref="GeneID:3958175"
CDS 6182..8668
/gene="gyrA"
/locus_tag="DSY0006"
/EC_number="5.99.1.3"
/note="similarity to COG0188 DNA gyrase (topoisomerase II)
A subunit(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_516239.1"
/db_xref="GI:89892752"
/db_xref="GeneID:3958175"
/translation="MSTEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLK
PVHRRIIYTLHELGMTPNKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRY
PLIDGHGNFGSVDGDSAAAMRYTEARMSKITQYMLADIDKDTVDFQPNYDEREQEPKV
MPAKFPNLLVNGSAGIAVGMATNIPPHNLTEVIEGTIAQIDNPEIEIKELMTYIKGPD
FPTGASIMGTEGIISAYRTGKGSFRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLV
EKIAELVREKRIEGITDLRDESDRTGMRIVMELRRDVNPQVLLNQLYKHTQMEESFGV
NILALVDGQPKVLNLKQIIHYFIEHQKDVIVRRTRFELNKAEAEAHILEGLRIALDYI
DEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQ
ETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVV
ITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGK
VYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLSIRKYNEDFHLFMATRKGIV
KKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQ
MGRTAHGVKGISLEKEDLVVSMDVIYEEEAEILSMTELGFSKRTSLSEYRVQGRGGKG
IIATKLNAKTGKLVGLKVMRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRTG
ESKVVAIAVVDNKEDAEESDLELVEIESEE"
misc_feature 6197..8617
/gene="gyrA"
/locus_tag="DSY0006"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:235502"
misc_feature 6275..7612
/gene="gyrA"
/locus_tag="DSY0006"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes...;
Region: TOP4c; cd00187"
/db_xref="CDD:238111"
misc_feature order(6275..6358,6371..6520,6524..6580,6584..6655,
6662..6664)
/gene="gyrA"
/locus_tag="DSY0006"
/note="CAP-like domain; other site"
/db_xref="CDD:238111"
misc_feature 6551..6553
/gene="gyrA"
/locus_tag="DSY0006"
/note="active site"
/db_xref="CDD:238111"
misc_feature order(7349..7357,7364..7375,7406..7411,7451..7501)
/gene="gyrA"
/locus_tag="DSY0006"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:238111"
misc_feature 7697..7840
/gene="gyrA"
/locus_tag="DSY0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 7847..8002
/gene="gyrA"
/locus_tag="DSY0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 8021..8155
/gene="gyrA"
/locus_tag="DSY0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 8162..8302
/gene="gyrA"
/locus_tag="DSY0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 8318..8455
/gene="gyrA"
/locus_tag="DSY0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 8468..8608
/gene="gyrA"
/locus_tag="DSY0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
gene 8783..9349
/locus_tag="DSY0007"
/db_xref="GeneID:3953695"
CDS 8783..9349
/locus_tag="DSY0007"
/note="similarity to COG0311 Predicted glutamine
amidotransferase involved in pyridoxine
biosynthesis(Evalue: 2E-26)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516240.1"
/db_xref="GI:89892753"
/db_xref="GeneID:3953695"
/translation="MNERIGVLSLEGTDHDPCRFLRQLGCEVIRVQQREDLIDIQGLI
MTGTGNKAKNLGQPGLGDRIKELAKADFPIFGLGAGMVLLSKESPGQGNDRLGLMDLT
VTKEPMAGRTEAYLSIPALGLTPLKAIFNEAPYIQEITPNVGILAEYNGKIVFVRQGN
MLAGAFHPQQTEDDRIYRYFLDIVNGQI"
misc_feature 8795..9325
/locus_tag="DSY0007"
/note="Glutamine Amidotransferase (GATase_I) involved in
pyridoxine biosynthesis; Region: GATase1_PB; cd01749"
/db_xref="CDD:153220"
misc_feature order(8921..8923,9014..9016,9173..9178,9281..9283,
9287..9289)
/locus_tag="DSY0007"
/note="predicted active site [active]"
/db_xref="CDD:153220"
misc_feature order(9014..9016,9281..9283,9287..9289)
/locus_tag="DSY0007"
/note="catalytic triad [active]"
/db_xref="CDD:153220"
gene 9380..10645
/gene="serS"
/locus_tag="DSY0008"
/db_xref="GeneID:3958261"
CDS 9380..10645
/gene="serS"
/locus_tag="DSY0008"
/EC_number="6.1.1.11"
/note="catalyzes a two-step reaction, first charging a
serine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="seryl-tRNA synthetase"
/protein_id="YP_516241.1"
/db_xref="GI:89892754"
/db_xref="GeneID:3958261"
/translation="MLDLKFVRTNPEVVKEALKKRNSNVSLDAFLEQEEERRKLLFEV
ESLKAKRNTVSEEVGRRKKHGEDAEQLILEMREVGQKVKNLEDKLGEIEQSMEAVLYE
IPNIPHESVPVGADEEANVEVRTWGTPRSFDFEPLAHYEIGEKLDILDFARAGKVTGA
RFTFYKGLGAKLERALISFMLDRHSAKGYVEVLPPYMVHRNSMIGTGQLPKFEEDAFK
VAGTDYFLIPTAEVPVTNMYREEILEAEQLPIHHCAYSACFRAEAGSAGRDTRGLIRQ
HQFNKVELVKFAFPENSYEELESLTRDAESILQELELPYRVMALSTGDLGFTSAKTYD
LEVWLPSFNTYREISSCSNFEDFQARRANIRFRRAPKAKPEFLHTLNGSGLAIGRTVS
AILENYQEADGRVRVPKALQPYLGVEYIG"
misc_feature 9380..10642
/gene="serS"
/locus_tag="DSY0008"
/note="seryl-tRNA synthetase; Provisional; Region:
PRK05431"
/db_xref="CDD:235461"
misc_feature 9380..9700
/gene="serS"
/locus_tag="DSY0008"
/note="Seryl-tRNA synthetase N-terminal domain; Region:
Seryl_tRNA_N; pfam02403"
/db_xref="CDD:217020"
misc_feature 9734..10624
/gene="serS"
/locus_tag="DSY0008"
/note="Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the attachment
of serine to the 3' OH group of ribose of the appropriate
tRNA. This domain It is primarily responsible for
ATP-dependent formation of the enzyme...; Region:
SerRS_core; cd00770"
/db_xref="CDD:238393"
misc_feature order(9836..9853,9860..9880,9890..9892,9896..9898,
9902..9904,9911..9913,9947..9958,9962..9970,9974..9976,
10028..10033,10037..10039,10049..10051,10076..10078,
10088..10090,10100..10102,10148..10150,10211..10213,
10619..10624)
/gene="serS"
/locus_tag="DSY0008"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238393"
misc_feature order(9857..9859,10064..10066,10070..10072,10157..10159,
10163..10165,10181..10183,10190..10192,10199..10201,
10205..10207,10214..10216,10220..10222,10226..10228,
10418..10429,10520..10522,10526..10528,10544..10546)
/gene="serS"
/locus_tag="DSY0008"
/note="active site"
/db_xref="CDD:238393"
misc_feature 9947..9970
/gene="serS"
/locus_tag="DSY0008"
/note="motif 1; other site"
/db_xref="CDD:238393"
misc_feature 10154..10165
/gene="serS"
/locus_tag="DSY0008"
/note="motif 2; other site"
/db_xref="CDD:238393"
misc_feature order(10529..10537,10544..10546)
/gene="serS"
/locus_tag="DSY0008"
/note="motif 3; other site"
/db_xref="CDD:238393"
gene 10747..10835
/locus_tag="DSY_tRNA1-Ser"
/db_xref="GeneID:3958015"
tRNA 10747..10835
/locus_tag="DSY_tRNA1-Ser"
/product="tRNA-Ser"
/db_xref="GeneID:3958015"
gene 11032..11110
/locus_tag="DSY_tRNA2-Arg"
/db_xref="GeneID:3958026"
tRNA 11032..11110
/locus_tag="DSY_tRNA2-Arg"
/product="tRNA-Arg"
/db_xref="GeneID:3958026"
gene 11126..11572
/locus_tag="DSY0009"
/db_xref="GeneID:3953696"
CDS 11126..11572
/locus_tag="DSY0009"
/note="similarity to COG0590 Cytosine/adenosine
deaminases(Evalue: 4E-43)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516242.1"
/db_xref="GI:89892755"
/db_xref="GeneID:3953696"
/translation="MNHQDYMRLALEEAEIAFAQGEVPIGAVVVHKGEIIARAHNEKE
LRQDPTAHAEVLAVQRATQALGIWRLSEATLYVTLEPCPMCAGSLVQARLKTLVFGAA
DLKGGAVGSVTNVLDVNRWNHRVEVVAGILEEECAQILKDFFRKLR"
misc_feature 11144..11467
/locus_tag="DSY0009"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:238612"
misc_feature order(11198..11200,11246..11248,11279..11287,11369..11371,
11378..11380)
/locus_tag="DSY0009"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:238612"
misc_feature order(11273..11275,11288..11290,11300..11302,11372..11377,
11384..11389,11396..11401)
/locus_tag="DSY0009"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238612"
misc_feature order(11279..11287,11366..11371,11378..11380)
/locus_tag="DSY0009"
/note="catalytic motif [active]"
/db_xref="CDD:238612"
gene 11822..11910
/locus_tag="DSY_tRNA3-Ser"
/db_xref="GeneID:3958037"
tRNA 11822..11910
/locus_tag="DSY_tRNA3-Ser"
/product="tRNA-Ser"
/db_xref="GeneID:3958037"
gene complement(12071..13258)
/locus_tag="DSY0010"
/db_xref="GeneID:3953697"
CDS complement(12071..13258)
/locus_tag="DSY0010"
/note="similarity to COG0582 Integrase(Evalue: 6E-23)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516243.1"
/db_xref="GI:89892756"
/db_xref="GeneID:3953697"
/translation="MDGKRKPKWVSTGLPVAGTSDRKAQKAFDQIRLEYEQEQEEKER
REAEERAREQIEGKRNPQADVLFTDYLQKWLTQAKPTIAKTTFKGYQTMLDGRISRYF
TELNITLGEVTPQHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQNAVKKEIIDSNPAD
RVDRPKKNVYHAQFYSAEEMMALFDEISDDPLEICVKLAAYYGLRRSEVLGLKWDAIN
LEQKTISIKHKVIEDTVDGKSIAVGEDVLKTKSSFRTLPLLPSVEKLLLAEKEKQEMY
RKLFKRSYCRDYLDYICLDQAGKLMRPNYVTEHFSWALEKADLKKIRFHDLRHSCASL
LLANGISMKQIQIWLGHSTFSTTADIYSHLDFHAQIESGLVMDGMFERNRVAEPTGLA
AAN"
misc_feature complement(<12581..13075)
/locus_tag="DSY0010"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:241691"
misc_feature complement(12164..13012)
/locus_tag="DSY0010"
/note="tyrosine recombinase XerD; Region: recomb_XerD;
TIGR02225"
/db_xref="CDD:233789"
misc_feature complement(12167..12742)
/locus_tag="DSY0010"
/note="phiLC3 phage and phage-related integrases,
site-specific recombinases, DNA breaking-rejoining
enzymes, C-terminal catalytic domain. This CD includes
various bacterial (mainly gram positive) and phage
integrases, including those similar to Lactococcus...;
Region: INT_phiLC3_C; cd01189"
/db_xref="CDD:238594"
misc_feature complement(order(12176..12178,12206..12208,12275..12277,
12284..12286,12515..12517,12644..12646))
/locus_tag="DSY0010"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:238594"
gene complement(13699..14067)
/locus_tag="DSY0011"
/db_xref="GeneID:3953698"
CDS complement(13699..14067)
/locus_tag="DSY0011"
/note="similarity to COG2337 Growth inhibitor(Evalue:
3E-29)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516244.1"
/db_xref="GI:89892757"
/db_xref="GeneID:3953698"
/translation="MDTIKQGVSRGDIYYADLNPVVGCEQGGIRPVLILQNDIGNRHS
PTIIVCAITGKPKKPLPTHTAIAGAGRLSRESFALLEQIRTIDRSRLRGWIGRLDEQK
MEEINQALSISVGLSPALLL"
misc_feature complement(13726..14040)
/locus_tag="DSY0011"
/note="PemK-like protein; Region: PemK; pfam02452"
/db_xref="CDD:217045"
gene 14335..14592
/locus_tag="DSY0012"
/db_xref="GeneID:3953699"
CDS 14335..14592
/locus_tag="DSY0012"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516245.1"
/db_xref="GI:89892758"
/db_xref="GeneID:3953699"
/translation="MIPRSRGAVTGQKYQYRLTGSLRDRLPQPVFRSDGYRFAPYLAV
FDRSRKKRANRKVSDSAFLAACLQVVLAHPPGSLSLLGSVS"
gene 14748..15323
/locus_tag="DSY0013"
/db_xref="GeneID:3953700"
CDS 14748..15323
/locus_tag="DSY0013"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516246.1"
/db_xref="GI:89892759"
/db_xref="GeneID:3953700"
/translation="MDCHAWNTGFCRQLMLTFILKKQSVDEFLFLLDKLRKALVEFFC
DELVHNQILHTGRNKVGDYILTIGSLRIQGTVIKHAVCCIPFLQISFAALHAVIGQID
FLANRDELPLHLDLIFFFLCHMACPPFSEILMVSQNFRSGGERQRGFDTLKYETTLKS
PFFGTLGRSIRFLVERKKSALCPRQNTDFFS"
gene complement(15662..16903)
/locus_tag="DSY0014"
/db_xref="GeneID:3953701"
CDS complement(15662..16903)
/locus_tag="DSY0014"
/note="similarity to COG0477 Permeases of the major
facilitator superfamily(Evalue: 4E-33)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516247.1"
/db_xref="GI:89892760"
/db_xref="GeneID:3953701"
/translation="MQQWKKKTLIFLISQGITLFGSSVVQFAIVWDVTLKTSSGAWVS
AFTICSFLPQFLISFFSGVWADRYSRKFLIILSDTVIAATTLTLVLLMPFIGNGTSLY
TALLIASVIRSLGAGIQTPAVNSMIPQLVPDEHLMRLNGINATLQSVVQFAAPAAAGA
ILTFSTLRSTLFIDITTAIIGVVLLACIAIPKQVANEKTEAPSVFAEMKQGMKYTFAN
RFIGKLLITYGLFIFLAVPAGFLAALFVSRIYGDNYFYLTATELVGFAGMTAGGILIS
TWGGFSNRVKTLLVGMVVFGTLAIGMGAIRNFVVYLVLMAVYGIALTMVQTAVTTLIQ
EKTDDHMQGRIFGFLSAMYSGCLPLGMAVFGPLSDVVSIRILMIVTGGVLVILAGVLR
LDKSVYGKTKPLPALKRSHTK"
misc_feature complement(15731..16882)
/locus_tag="DSY0014"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(15788..16873)
/locus_tag="DSY0014"
/note="H+ Antiporter protein; Region: 2A0121; TIGR00900"
/db_xref="CDD:162098"
misc_feature complement(order(15833..15835,15842..15847,15854..15859,
15866..15871,15902..15904,15911..15916,15926..15928,
15935..15940,15947..15949,16076..16078,16088..16090,
16097..16099,16109..16111,16121..16123,16163..16165,
16172..16177,16184..16189,16196..16198,16451..16453,
16469..16474,16481..16486,16520..16522,16529..16534,
16541..16546,16553..16558,16718..16723,16727..16732,
16742..16744,16751..16756,16763..16765,16814..16819,
16823..16831,16838..16840))
/locus_tag="DSY0014"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(17246..17743)
/locus_tag="DSY0015"
/db_xref="GeneID:3953702"
CDS complement(17246..17743)
/locus_tag="DSY0015"
/note="similarity to COG0440 Acetolactate synthase, small
subunit(Evalue: 6E-24)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516248.1"
/db_xref="GI:89892761"
/db_xref="GeneID:3953702"
/translation="MKRWISLLVENEIGVLARVSSLFSGKSYNLDSLTVGATEDNSIS
RMTISLTSDDQTFEQIKKQLNRSVEVIKVVDFTDVAIHMKELMFIKISDCTQQEMIQL
THIISVFALKMIDYDADTAIIECVQTEDRNNNLIRLFEKTFPNRFSIVRGGGVAIEAI
NLSNG"
misc_feature complement(17270..17743)
/locus_tag="DSY0015"
/note="acetolactate synthase 3 regulatory subunit;
Reviewed; Region: ilvH; PRK11895"
/db_xref="CDD:183365"
misc_feature complement(17522..17737)
/locus_tag="DSY0015"
/note="N-terminal ACT domain of the Escherichia coli
IlvH-like regulatory subunit of acetohydroxyacid synthase
(AHAS); Region: ACT_AHAS; cd04878"
/db_xref="CDD:153150"
misc_feature complement(order(17612..17614,17639..17641,17654..17659,
17696..17698,17711..17713,17717..17719))
/locus_tag="DSY0015"
/note="putative valine binding site [chemical binding];
other site"
/db_xref="CDD:153150"
misc_feature complement(order(17609..17611,17639..17653,17663..17665,
17672..17674,17693..17695,17702..17707))
/locus_tag="DSY0015"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153150"
misc_feature complement(17270..17494)
/locus_tag="DSY0015"
/note="Small subunit of acetolactate synthase; Region:
ALS_ss_C; pfam10369"
/db_xref="CDD:204463"
gene complement(17743..19485)
/locus_tag="DSY0016"
/db_xref="GeneID:3953703"
CDS complement(17743..19485)
/locus_tag="DSY0016"
/note="similarity to COG0028 Thiamine
pyrophosphate-requiring enzymes acetolactate synthase,
pyruvate dehydrogenase (cytochrome), glyoxylate
carboligase, phosphonopyruvate decarboxylase(Evalue:
1E-157)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516249.1"
/db_xref="GI:89892762"
/db_xref="GeneID:3953703"
/translation="MRISGADLLVKALKEENVDTLFAYPGGQAIDLFNALYGVENINV
VLPRHEQGLIHAADGYARSTGKVGVCLVTSGPGATNLVTGIATANYDSVPLVCFTGQV
PTHLIGNDAFQEVDIVGITRSICKYAVTVRKREDLGTTIKKAFYIARSGKPGVVVVDL
PKDIQQQLGSALYPDNIELRGYKPNTTVHIGQINKALDCISHSKKPVFLIGGGVNISH
ANNEMTLLAEKTGIPVVTTIMGKGAIPTNHPLYVGNLGIHGSYAANSAISECDVLFSI
GVRFNDRITGKIGEFAKHATIIHIDIDPASISRNIVVDIPIVADAKNAISRLLEKAVC
LHTEEWIKQICNWKQLHPLNIPLQDANQVTPQAIIQEINTLFEHAVITTDVGQNQLWA
SQFIELTDNKVFLTSGGLGTMGYGFPAAIGAKLGNPDKDVIAICGDGGIQMNIQEIAT
AVVYELPVIICIMNNGYLGNVRQWQEMFYSKRYSKTCLLWRKGCSTICNTPDAVCPEY
TPDFIRLAESYGAQGIRVKKTEEIKSALLKAKNTDKVPTIIEFLIGREENVYPIIPPG
NSLNDMVMGGENIR"
misc_feature complement(17767..19479)
/locus_tag="DSY0016"
/note="acetolactate synthase, large subunit, biosynthetic
type; Region: acolac_lg; TIGR00118"
/db_xref="CDD:232833"
misc_feature complement(19000..19467)
/locus_tag="DSY0016"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature complement(order(19213..19218,19225..19227,19237..19239,
19258..19260,19294..19302,19306..19311,19318..19323,
19330..19332,19339..19359,19384..19386,19396..19398,
19408..19413,19426..19428))
/locus_tag="DSY0016"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(order(19117..19119,19126..19128,19228..19230,
19237..19242,19246..19251,19258..19260,19333..19335,
19339..19350,19354..19356,19384..19386,19396..19398,
19405..19413))
/locus_tag="DSY0016"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(order(19246..19248,19258..19260,19336..19338,
19411..19413))
/locus_tag="DSY0016"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature complement(18502..18909)
/locus_tag="DSY0016"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:215786"
misc_feature complement(17788..18399)
/locus_tag="DSY0016"
/note="Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the condensation
of two molecules of pyruvate to give the...; Region:
TPP_AHAS; cd02015"
/db_xref="CDD:238973"
misc_feature complement(order(18091..18093,18157..18159,18166..18174,
18247..18249,18253..18255,18322..18333))
/locus_tag="DSY0016"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:238973"
misc_feature complement(order(17932..17934,17941..17943,17953..17958,
18127..18129,18148..18153,18157..18162,18247..18249,
18253..18255,18262..18264))
/locus_tag="DSY0016"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238973"
gene complement(19630..20211)
/locus_tag="DSY0017"
/db_xref="GeneID:3953704"
CDS complement(19630..20211)
/locus_tag="DSY0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516250.1"
/db_xref="GI:89892763"
/db_xref="GeneID:3953704"
/translation="MKKILVFLTATLCLTFAACTPIQIEQVEKNALSDNEQYRLAVHI
TDHDSAVIHLTDTLLKDEYEVNRSGSPEMQDEYGWYVQIGIYRAMLHYVKDSLEGEAK
KIGVKDMQLELYKCEYNQKGELFHMVELPSESISLKLEGNNLVFSIEIPNEYYFDLRS
QADIIELQTMDCTRELPYQALTVNAGDVVTKDS"
gene complement(20287..21129)
/locus_tag="DSY0018"
/db_xref="GeneID:3953705"
CDS complement(20287..21129)
/locus_tag="DSY0018"
/note="similarity to COG2207 AraC-type DNA-binding
domain-containing proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516251.1"
/db_xref="GI:89892764"
/db_xref="GeneID:3953705"
/translation="MRKLEAALAAIAYIEEHLSDEKVDLDTVSEAVHYSKYHLHRIFS
NTVQLTIHEYAQRRQLTEAAKLLVFSEKPILDIALLAGYDSQQAFSNVFKAMYKQSPL
EFRKGEVFYPLQLEYDFKDQSGIIGVCEANPKKEIRYATDIDIPTWMDLARLCVDGFP
YLDEDEHIVALKRYIEKDGALLMLEGSAVIGSMLINYETGSIDFLAVHPLYRKRGVAG
EFLDTALSELIENKEISITTFREGDKADTGYRKALKELGFAEAELLTEFGYPTQRMVL
ARDG"
misc_feature complement(20815..21066)
/locus_tag="DSY0018"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(20812..20922)
/locus_tag="DSY0018"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
misc_feature complement(20356..20700)
/locus_tag="DSY0018"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_10; pfam13673"
/db_xref="CDD:222309"
misc_feature complement(20419..20607)
/locus_tag="DSY0018"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(20476..20481,20509..20517))
/locus_tag="DSY0018"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(21457..21771)
/locus_tag="DSY0019"
/db_xref="GeneID:3953706"
CDS complement(21457..21771)
/locus_tag="DSY0019"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516252.1"
/db_xref="GI:89892765"
/db_xref="GeneID:3953706"
/translation="MWRRLSALSYWPLYPCAIRRAMVRNCWIQIIKWWKFYTMLHTIP
LSKPRKQHLFTQFPMTTLYMKRKQHRTLHGVSRVIYMLLITARRSLTVFLTRSITKRI
SG"
gene complement(21818..22399)
/locus_tag="DSY0020"
/db_xref="GeneID:3953707"
CDS complement(21818..22399)
/locus_tag="DSY0020"
/note="similarity to COG0655 Multimeric flavodoxin WrbA"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516253.1"
/db_xref="GI:89892766"
/db_xref="GeneID:3953707"
/translation="MKVCIIMGSPRIKGNTAELLKPFISTLESNGCAVTYISLSDKNI
QPCKGCYACQQIDGRYGCVQEDDVGVIMETVIESDCVVLATPIYTWYCTAPMKALLDR
HYGLNKFYGKATGSLWAGKMIAIIATHGYDVKYGAEPFEMGIRRLCEHSDLKYMGMYS
VRDEEDIASFQTEEAIAGAKAFACSLCHYEIAR"
misc_feature complement(21854..22399)
/locus_tag="DSY0020"
/note="Multimeric flavodoxin WrbA [General function
prediction only]; Region: WrbA; COG0655"
/db_xref="CDD:223728"
misc_feature complement(<22010..22399)
/locus_tag="DSY0020"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
pfam03358"
/db_xref="CDD:217511"
gene complement(22459..22914)
/locus_tag="DSY0021"
/db_xref="GeneID:3953538"
CDS complement(22459..22914)
/locus_tag="DSY0021"
/note="similarity to COG0454 Histone acetyltransferase
HPA2 and related acetyltransferases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516254.1"
/db_xref="GI:89892767"
/db_xref="GeneID:3953538"
/translation="MNVHKIIRAEQADLPAILELQYLAYQSEAILLGNYSIPPLKQTL
QELETEYKNGVILKAVHENGDIVGSVRGYTCSGTFYIGKLIVHPAVQGRGIGTQLLNE
IESLYPQLRYELFTSSMSNKNLKLYERQGYSRFKEKQVANGLTFIYLEK"
misc_feature complement(22519..22878)
/locus_tag="DSY0021"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_10; pfam13673"
/db_xref="CDD:222309"
misc_feature complement(22567..22740)
/locus_tag="DSY0021"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(22624..22629,22657..22665))
/locus_tag="DSY0021"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(22984..23565)
/locus_tag="DSY0022"
/db_xref="GeneID:3953539"
CDS complement(22984..23565)
/locus_tag="DSY0022"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516255.1"
/db_xref="GI:89892768"
/db_xref="GeneID:3953539"
/translation="MIKGDKINLIPATLDDRRKIYEWCFQSETTKCHSGPPDYPNNPI
PTYEEFCSSDDGGYTEYYFTGVKPKDGRGFLIVNGKEAVGFISYYSFHLKSGISELDM
WIKDEANCGKGFGTDALVSLGNYLNEEMGIRELIIAPSERNTRAVRAYGKAGFVKTDK
AMSEFLADEYISVFGEGDYGTGDTAILVKRFNA"
misc_feature complement(23098..23550)
/locus_tag="DSY0022"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:222034"
misc_feature complement(23098..23325)
/locus_tag="DSY0022"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cl17182"
/db_xref="CDD:247736"
gene complement(23631..24596)
/locus_tag="DSY0023"
/db_xref="GeneID:3953540"
CDS complement(23631..24596)
/locus_tag="DSY0023"
/note="similarity to COG0596 Predicted hydrolases or
acyltransferases (alpha/beta hydrolase
superfamily)(Evalue: 2E-32)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516256.1"
/db_xref="GI:89892769"
/db_xref="GeneID:3953540"
/translation="MKKQNNFTSEYIKINGTLQYLLHYCTDPALPVLLFLHGGPGMAE
STFAYAFQEGMSQLFTVVHWDQRGAGKTLTKNKKNVGYPTVDELLVDTLEVVRYLKKK
YGKDKIVILGHSWGSMLGTLFVQKYPQEVLYYIGTGQFVDVVENERAGYDKLRELITE
AGNLKNLAQLEKIGDYPESNYEKPMIKKIQSIRILQGKYKIGMNFGPILKALLKSPVF
RLSDLSSLVKGMSNNKELWNYMFSSNLYSESRVYQMPVFYILGADDFQAPHTIATRYF
DTIEAPLKKLFIMNGAAHFMMLDQPKGFAQILSEIRRIEHTNGHI"
misc_feature complement(23655..24572)
/locus_tag="DSY0023"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:223669"
gene complement(24659..25207)
/locus_tag="DSY0024"
/db_xref="GeneID:3953541"
CDS complement(24659..25207)
/locus_tag="DSY0024"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516257.1"
/db_xref="GI:89892770"
/db_xref="GeneID:3953541"
/translation="MLAGCASGNVDPERILRDDFDRSTAIEMIQELEEPLMNFPLTGT
ITRTEFDTFQEQYTVFREDDGNWLKVFISANDEGNPMVSDLRIAEDNFVPTLFHQEID
IAEAYTEQLIYEEKNSERNHTNLYIIEEYSGTDEKMKGFSRTYHFSLTNGKEWKYEGF
SGAANLAGEGYFRDYLSLKQED"
gene complement(25255..25878)
/locus_tag="DSY0025"
/db_xref="GeneID:3953542"
CDS complement(25255..25878)
/locus_tag="DSY0025"
/note="similarity to COG1305 Transglutaminase-like
enzymes, cysteine proteases(Evalue: 1E-37)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516258.1"
/db_xref="GI:89892771"
/db_xref="GeneID:3953542"
/translation="MRLSQQNENLADYLEETYLVNYNTATLQQKAAQLFAHSITDIDK
INTAYEFVRDSIRHSADINGHRITKTATEVLLYGEGMCYSKTILFTALLRSQGIHIGF
CYQRLTRDDQGNTEYDIHALNAVYIADKKAWVRIDPRGNTNGRNAQFYPGDPLREQLA
YTVRPDVGEIDYPGVYTRHPDRVLYPLLRCKDCLEMMAYHLPDRLEE"
misc_feature complement(25321..>25857)
/locus_tag="DSY0025"
/note="Transglutaminase-like enzymes, putative cysteine
proteases [Amino acid transport and metabolism]; Region:
COG1305"
/db_xref="CDD:224224"
misc_feature complement(25465..25797)
/locus_tag="DSY0025"
/note="Transglutaminase-like superfamily; Region:
Transglut_core; pfam01841"
/db_xref="CDD:216735"
gene complement(25881..26465)
/locus_tag="DSY0026"
/db_xref="GeneID:3953543"
CDS complement(25881..26465)
/locus_tag="DSY0026"
/note="similarity to COG1309 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516259.1"
/db_xref="GI:89892772"
/db_xref="GeneID:3953543"
/translation="MPPKQKISKDTLLAHAFSIAEESGINSVTSRSVAKKAGCSIQPV
FSHFPTMEDLRQATFDYACEVFKEETMPYEQEPDFFSKLTMWVIDLARHRPNLYRLVY
LSDAFRNSQLSDAIMGFQINEKALQKMMERYELPFTACQDILQRTFLLLYGAATMVCV
NHADLSNEQIASMIRMSVSDMVQSAKKANGGSED"
misc_feature complement(25938..26465)
/locus_tag="DSY0026"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:224228"
misc_feature complement(26295..26432)
/locus_tag="DSY0026"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature complement(25980..26204)
/locus_tag="DSY0026"
/note="WHG domain; Region: WHG; pfam13305"
/db_xref="CDD:205485"
gene complement(27044..27316)
/locus_tag="DSY0027"
/db_xref="GeneID:3953544"
CDS complement(27044..27316)
/locus_tag="DSY0027"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516260.1"
/db_xref="GI:89892773"
/db_xref="GeneID:3953544"
/translation="MNMSYFNHIYTALPDELPHRARTVYIYLRDRAGKDSDCWPAVKT
IAADLQLSRSTVKRALHDLVRAGLIEKETRYRENGSNTSNRLILKK"
misc_feature complement(27110..27271)
/locus_tag="DSY0027"
/note="Helix-turn-helix domain; Region: HTH_36; pfam13730"
/db_xref="CDD:222348"
gene complement(27325..29148)
/locus_tag="DSY0028"
/db_xref="GeneID:3953545"
CDS complement(27325..29148)
/locus_tag="DSY0028"
/note="similarity to COG3505 Type IV secretory pathway,
VirD4 components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516261.1"
/db_xref="GI:89892774"
/db_xref="GeneID:3953545"
/translation="MPSQVYILIAAAAVMFFVIGGLSLLAHYYTLNGIKSRTVGDGQH
GTARFASKQEIKNTYQHIPFQPELWRQGQCLPTAAEQGIILGCVGAKNKVTAMVDSDD
VHCLMIGASGIGKTAYFLYPNLEYACASGMSFLTTDTKGDLYRNYGAIARDYYGYHVA
VIDLRNPTRSDGNNMLHLVNAYMDRYLADENNLVAKAKAEKYAKIIAKTIINASGENY
GQNQFFYDAAEGLLSSVILLVAEYLPPTKADGKKVDCRHIISVFKLVQDLLAPSKVKG
KSQFQLLMEKLPPDHKARWFAGAALNSAEQAMASVLSTVLSRLNAFLDSEMEQILCFD
TAIDAEKFCNKKSALFIVLSEEDLTKYFMVSLMIQQLYREILAVADENGGKLKNRVMF
YCDELGTLPAIQSLELIFSASRSRRLSIIPIIQSFGQLEKNYGKEGSEIIVDNCQDTI
FGGFAPNSQTAEVLSKALGSRTVMSGSISRGKNDPSQSLQMMERPLMTPDELKSIPKG
NFVVMKTGTHPMRTKLRLFLDWGIRFEKPYTVAEKAHRKVAYADKLLLEESIVRKHSA
YLMVDEETGEVLEPFEGTGALHTPVAEPAENAVKRRSHLKT"
misc_feature complement(27562..29127)
/locus_tag="DSY0028"
/note="Type IV secretory pathway, VirD4 components
[Intracellular trafficking and secretion]; Region: VirD4;
COG3505"
/db_xref="CDD:226036"
misc_feature complement(27628..27984)
/locus_tag="DSY0028"
/note="TraM recognition site of TraD and TraG; Region:
TraG-D_C; pfam12696"
/db_xref="CDD:221719"
gene complement(29216..30622)
/locus_tag="DSY0029"
/db_xref="GeneID:3953546"
CDS complement(29216..30622)
/locus_tag="DSY0029"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516262.1"
/db_xref="GI:89892775"
/db_xref="GeneID:3953546"
/translation="MHFSDDQKYRANNVDLVDFLQRRGEKLIPSGRDKRLASDRSITV
RGNEWYDHSAESGGYAIDFVRQFYGLSFPEAVTILLGGEQGEVYRPASQKKQEPKQPF
ALPNPHSDMRRVYAYLTKTRLIDREVVSYFARAKLLYESCEKSKDGMKEYHNAVFVGY
DENGVPHHAHKRGLYTEGTGFKGNVDSCDPAYSFHHIGTSNRLFVFEAPIDLLSYITL
HPKDWQNHSYVALCGVSEYAMLKMLELHPNLNHVVLCLDHDEAGIEASEKYHDLLLEK
GVSCDRDLSVHKDWNEDIKANHGLPAIPAEEHPQHLIRDEICRELTETAMTVKSNCSA
NTLSALLMKALSYLHWGQFSEADECLREICRLSVAAAAREYRQMDHSRDISAVQSRLH
SGFRTYENRGHLKTRLDLLESDIMALRGFERVVAADEKEKLAECYEHIAAHGLKGVIL
LEKHRQKMEQTQEMKLSM"
misc_feature complement(30023..30277)
/locus_tag="DSY0029"
/note="Protein of unknown function (DUF3991); Region:
DUF3991; pfam13154"
/db_xref="CDD:221941"
misc_feature complement(29741..30013)
/locus_tag="DSY0029"
/note="Toprim-like; Region: Toprim_2; pfam13155"
/db_xref="CDD:221942"
misc_feature complement(order(29840..29842,29846..29848,29852..29854,
29990..29992,29999..30004))
/locus_tag="DSY0029"
/note="active site"
/db_xref="CDD:173773"
misc_feature complement(order(29852..29854,30002..30004))
/locus_tag="DSY0029"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173773"
gene complement(30781..33660)
/locus_tag="DSY0030"
/db_xref="GeneID:3953547"
CDS complement(30781..33660)
/locus_tag="DSY0030"
/note="similarity to COG0790 TPR repeat proteins(Evalue:
7E-33)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516263.1"
/db_xref="GI:89892776"
/db_xref="GeneID:3953547"
/translation="MARIIVKNGYLKGGSEKTSAHLNNLVKYIATRDGVEKIKNGREL
WHATKKQQTLIGEILREFPDAKEMFEYEDYLANPNRENASEFITIALEQHLDKIGDRE
KYLDYIANRPRVEKFESHGLFTAGDAPLVLSQVAEEVAAHTGNVWTPIISLRREDAAR
LDYDNAAAWKALLSSKAMELAENLKIHPDHLKWYGAFHNESHHPHIHMVCYSTDPREG
YLTKQGIRKMKSSLANEIFRQELIPLYGEKTQRRDELKEQSAESLRELIRQIKGGVLV
SERMEQLLTHLAERLQTVSGKKQYGYLKPELKNVVDEIVDDLAQDSRVSEAYRMWWET
KGRIESIYTETPSEPPPLSHCDDFKPIRNMVIQEALLIGNMTFEEPASVETALPEPEN
DLEMSLSDIEDEEDQEPIDDSVGRPSSDEASAGKESSDSWWTEEYRQAKQYLCGDEDA
GVPQDFRKAHELFMAEADKNNPLALYDLGRMSADGLGCEADADAAYGWYEKALVVLHA
AEEAKPWKYTEYRIGKMYAAGLGAEQDYLQASDWLTLSADKKYKYAQYSLGGLYYHGK
GVEQDHVTAFALYTRSADQSFPYASFELGKMLRDGIGCAKNQQDSDRRFKEAFLGFVS
LEEQSHDDKLQYRLGWMLLNGIGTDKDEARAKEYFEKAASVGNPFACYQLAKFILSDE
KAQPQDVEKALGYLRKAVEAENPYAAYFLGKLYEKGQHVPQNTAEAMRLYTLSAEQDN
EFAAYRLGKLYLDGDGVLKDVESAIRWLTFAADRKNQFAEYALGVLYFKGEDIPKDVP
KALEYLKRSAGQGNQFAQYRLGKIYLMGEDVPKDIQTALQFLTAAAEQGNQYAQYTLG
KLYLIGKDVPKDKETAVRWFTLSAAQGNIYAQFFLDHIDNFKDPSVLLAGTRLLHHMS
RIFADNAPPLKLPGQRTDRKLLRKLREKKQAQGHARDDHEQTMSL"
misc_feature complement(31540..32343)
/locus_tag="DSY0030"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:223861"
misc_feature complement(31906..32001)
/locus_tag="DSY0030"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature complement(31087..31845)
/locus_tag="DSY0030"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:223861"
misc_feature complement(31660..31758)
/locus_tag="DSY0030"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature complement(31441..31548)
/locus_tag="DSY0030"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature complement(31333..31434)
/locus_tag="DSY0030"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature complement(31225..31326)
/locus_tag="DSY0030"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature complement(31117..31218)
/locus_tag="DSY0030"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
misc_feature complement(31009..31110)
/locus_tag="DSY0030"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:214772"
gene complement(33660..34292)
/locus_tag="DSY0031"
/db_xref="GeneID:3953548"
CDS complement(33660..34292)
/locus_tag="DSY0031"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516264.1"
/db_xref="GI:89892777"
/db_xref="GeneID:3953548"
/translation="MVEKRAGERRVVASDRPPTTSPSSAGRFSYLDMRWSDWGFVTVR
VVASCENTRKQRNLHGHLAGGHSRNGGFHMKNNKERTAVWLYPETMERLDGWLIQDNC
KSRSEFIEKALCFYMGYLGTEDTSSYLSKALLSSMEGTLQKTENRVAGNLFRLSVEIS
MMMHLLATTLDISDEELHRLRGRCVAEVKKTKGKIRLDDAVEFQSRADDE"
gene 34384..35025
/locus_tag="DSY0032"
/db_xref="GeneID:3953549"
CDS 34384..35025
/locus_tag="DSY0032"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516265.1"
/db_xref="GI:89892778"
/db_xref="GeneID:3953549"
/translation="MPLRLLKWHTGADRGQRWGNGVLSHGRRLGEALFLHKRITILRQ
GDSIFLPAIRIHLGVKHRLFRIVHGIAACFLAAITPVQFDVQRIADLPRLHVKVGVYI
EPIIVPRRLHVGSEYRVHIKICVDIKVEPPVHFHDFIGEREVFFFEPGGCCQLRVMHL
CRRISAHWLTSRGSLAAAAVLFSLCFFGEAVVEASSSAPSSMYSRTVAGTYFS"
gene complement(35159..35494)
/locus_tag="DSY0033"
/db_xref="GeneID:3953550"
CDS complement(35159..35494)
/locus_tag="DSY0033"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516266.1"
/db_xref="GI:89892779"
/db_xref="GeneID:3953550"
/translation="MSRGRHPKSRKSKTTLPACRRRWAAGLNASAFQTAVCNEEGKLN
GMPPNRRLGADIICGPFFVCDTTREGNFASLSKSKVAEYSQLFKEIPEFTGQEPELQP
GITFIGFEY"
misc_feature complement(35267..>35389)
/locus_tag="DSY0033"
/note="Domain of unknown function (DUF3846); Region:
DUF3846; pfam12957"
/db_xref="CDD:221874"
gene complement(35549..37057)
/locus_tag="DSY0034"
/db_xref="GeneID:3953551"
CDS complement(35549..37057)
/locus_tag="DSY0034"
/note="similarity to COG0739 Membrane proteins related to
metalloendopeptidases(Evalue: 8E-24)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516267.1"
/db_xref="GI:89892780"
/db_xref="GeneID:3953551"
/translation="MADPATIAAIAKAAVTALSDERTRKTIGWIIAAILSPLILVIVL
VCSLLSGTTNHNNTAVELCFHGGVIPGSMPADYREYIGDMRQSFTLIDNAIADVNAEI
EGGDSLDDYRVKAIFYSLFFGAESPSRLEHREYVDCFVTYEERTRTVENENGTTSEET
YTVAVPIDSLPTVYNNIRTLFDRAITYEDQANANEIYYRARYGTGAPMEGDGAESWED
WTPDQIDGFYSDLPVGEAGAEAVRLGLSRLGDPYSQELRGQGDYTDCSYLVQWVYKKL
GVNLPGTAAAQGKYCVDNGLTIPKSSLAPGDLVFWSHEPNGRFMNITHVGIYAGDGKV
VDASSSRGEVVYRDLFDSGKQVLYARPYAEAPEASASGFVSPLGKSWRSMVTSEFGGR
TDPITGQQAGHSGIDLGASKGTSIRSAKAGTVKTVVYGSTGYGYYLTIDHGGGLVTLY
GHCSVILVREGQTVKSGETVAKVGSTGRSTGNHLHFEVRVNGAKQNPRNYLP"
misc_feature complement(36011..>36367)
/locus_tag="DSY0034"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:223862"
misc_feature complement(35999..36268)
/locus_tag="DSY0034"
/note="NlpC/P60 family; Region: NLPC_P60; cl17555"
/db_xref="CDD:248109"
misc_feature complement(35552..>35965)
/locus_tag="DSY0034"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:223810"
misc_feature complement(35567..35854)
/locus_tag="DSY0034"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:216566"
gene complement(37062..37565)
/locus_tag="DSY0035"
/db_xref="GeneID:3953552"
CDS complement(37062..37565)
/locus_tag="DSY0035"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516268.1"
/db_xref="GI:89892781"
/db_xref="GeneID:3953552"
/translation="MKNKLYIAYGSNLNLPQMAHRCPSAKVVGASEIKDYALLFRGGR
SGAVATVEPCEGSSVPVLLWNITPRDEQALDVYEGYPSFYEKQSMELPLDDRTVSAMV
YVMTPGHRLGYPSDYYYNTIREGYETAGFDTAVLEQAVDYTEQLMESEPEPEQQSLFG
FGGLKWW"
misc_feature complement(37251..37550)
/locus_tag="DSY0035"
/note="GGCT-like domains, also called AIG2-like family.
Gamma-glutamyl cyclotransferase (GGCT) catalyzes the
formation of pyroglutamic acid (5-oxoproline) from
dipeptides containing gamma-glutamyl, and is a dimeric
protein. In Homo sapiens, the protein is...; Region:
GGCT_like; cd06661"
/db_xref="CDD:119400"
misc_feature complement(order(37251..37253,37314..37316,37332..37337,
37530..37535,37539..37541,37548..37550))
/locus_tag="DSY0035"
/note="putative active site pocket [active]"
/db_xref="CDD:119400"
misc_feature complement(order(37254..37256,37263..37265,37296..37298,
37302..37316,37401..37403,37407..37412))
/locus_tag="DSY0035"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:119400"
misc_feature complement(37332..37334)
/locus_tag="DSY0035"
/note="putative catalytic residue [active]"
/db_xref="CDD:119400"
gene complement(37578..38615)
/locus_tag="DSY0036"
/db_xref="GeneID:3953553"
CDS complement(37578..38615)
/locus_tag="DSY0036"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516269.1"
/db_xref="GI:89892782"
/db_xref="GeneID:3953553"
/translation="MELQAQDFGIEIEMTGLTRSRAAEVIAEYFGTTKEYEGSFYDAY
FARDTSGRKWKVMSDGSLDCQRKEGRRKVSADRNYSVEVVSPICQYGDIETVQELIRK
LREAGAFVNSSCGIHIHINAAPFDAPHLRNLVNIMAAKEDMIYKALKVSRGRESHYCQ
KIDPAFLERLNRQKPATLDRLKSLWYNGGDGSREHYHHSRYHCLNLHSVFQKGTVEFR
AFNGDLHAGKIKAYIQFCLAITAQALNQRSASPTKTQSSNEKYTFRVWLLRLGMIGDE
FKTARGHLLDHLEGCIAWKDPEQAQRQKERLREKREAERQQTQAPPEEAVPETEMEAV
DEQSPAFTMSM"
misc_feature complement(37896..38600)
/locus_tag="DSY0036"
/note="Putative amidoligase enzyme; Region: Amidoligase_2;
pfam12224"
/db_xref="CDD:221470"
gene complement(38628..39107)
/locus_tag="DSY0037"
/db_xref="GeneID:3953554"
CDS complement(38628..39107)
/locus_tag="DSY0037"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516270.1"
/db_xref="GI:89892783"
/db_xref="GeneID:3953554"
/translation="MNRLQQQKENKAGLLEDMLSFIRYTPNREADLLAFMEKYQKADC
DERPAVLEKLRCCMDGKEYPNPYAESYHYTPEDVSLMGQILDDYIDDLLLAQGDPAAV
SECVRDTVLKINALNEECGRYLIDTWRRERLCGFINSAAELAGLSQEKDLTLQHRMW"
gene complement(39128..41008)
/locus_tag="DSY0038"
/db_xref="GeneID:3953555"
CDS complement(39128..41008)
/locus_tag="DSY0038"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516271.1"
/db_xref="GI:89892784"
/db_xref="GeneID:3953555"
/translation="MAAFPIPKIKIRKEETPMARKRTLPSPPQEDVKIKDFLDMIAPG
IIKFNTDHFLCGNTYRCVWVLREYPTATEEQAILRHLGEKDGVTLRIYTCQVTAAEEK
KIIHNAANKNRMDKSSTNDLQQTVTAESNLQDVVTLVSSMHRNREPLLHCAVFLELTA
HDSDGLKLLQTDVLTELVRSKLNVDRLILRQREGFLSVGPASRNVFGSQFERVLPASS
VANLYPFNYSGKTDPRGFYLGRDKFGSNIIADFDKRDDDKTNANVLILGNSGQGKSYL
LKLILCNILESGKSVLCLDPEHEYVELAENLGGCFIDLMSGRYRINPLEPKTWDEGGS
PEDTDAPQAFRQSTKLSQHISFLKDFFRCYKDFSDRHIDVIEIMLGKLYEQFGISDRT
DFRKLAATDYPILSDLYALIEAEYKGYDKTKYQLYPPELLQEILLGLHSMCMGAESQF
FNGHTNVTSDRFIVFGVKGLLQASRNVKNALLFNVLSFMSDKLLTEGNTASSIDELYL
FLTNLTAIEYIRNFMKRVRKKESAVILASQNLEDFNIEHIRELTKPLFSIPTHAFLFN
AGNIDKRFYIDSLQLEESEYNLIRFPQRGVCLYKCGIERYNLAVHAPAYKEKLFGTAG
GR"
misc_feature complement(39257..40231)
/locus_tag="DSY0038"
/note="AAA-like domain; Region: AAA_10; pfam12846"
/db_xref="CDD:221803"
misc_feature complement(<39857..40222)
/locus_tag="DSY0038"
/note="Domain of unknown function DUF87; Region: DUF87;
pfam01935"
/db_xref="CDD:216796"
gene 41100..41594
/locus_tag="DSY0039"
/db_xref="GeneID:3953556"
CDS 41100..41594
/locus_tag="DSY0039"
/note="similarity to COG1670 Acetyltransferases, including
N-acetylases of ribosomal proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516272.1"
/db_xref="GI:89892785"
/db_xref="GeneID:3953556"
/translation="MTKIIDKNMLSLRPIKKEDFSVIEEWLNKDYIKKWYGEPEEWLS
EIRNDSGDFGWLNHYIVLYQDMPIGFCQYYDCSKTPPGFEWDSEPKGTFCIDYLIGQE
FFLKKGLGSVIVQQLCSLIFKQENPVQIIADPVPENIDSIKLLERNGFTLDPTSGLYK
MKIK"
misc_feature 41127..41552
/locus_tag="DSY0039"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:222034"
misc_feature 41286..41552
/locus_tag="DSY0039"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:216007"
gene 41679..41786
/locus_tag="DSY0040"
/db_xref="GeneID:3955772"
CDS 41679..41786
/locus_tag="DSY0040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516273.1"
/db_xref="GI:89892786"
/db_xref="GeneID:3955772"
/translation="MPLAIQCHHAVCDGYHVGKFVEALRSMAANPKQWL"
misc_feature <41679..41750
/locus_tag="DSY0040"
/note="Chloramphenicol acetyltransferase; Region: CAT;
cl02008"
/db_xref="CDD:242830"
gene 41802..42299
/locus_tag="DSY0041"
/db_xref="GeneID:3955773"
CDS 41802..42299
/locus_tag="DSY0041"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516274.1"
/db_xref="GI:89892787"
/db_xref="GeneID:3955773"
/translation="MKNLYLIGGTMGVGKTATCQILKQKLNNSAFLDGDWCWDMHPFQ
VTEETKRMVIQNICFLLNNFIRCSAYENIIFCWVMHQQAIIDDILSQLDTVNCTVHSI
SLICSEQALRTRLEKDVASGIRAEDVVKRSIERIPLYEKLNTCKVDVSDITPEQATEL
ILQHC"
misc_feature 41811..>41927
/locus_tag="DSY0041"
/note="Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate group
transfer from nucleoside triphosphates...; Region: NK;
cl17190"
/db_xref="CDD:247744"
misc_feature 41817..42200
/locus_tag="DSY0041"
/note="AAA domain; Region: AAA_18; pfam13238"
/db_xref="CDD:222000"
misc_feature order(41826..41828,41841..41852)
/locus_tag="DSY0041"
/note="active site"
/db_xref="CDD:238977"
gene complement(42350..42952)
/locus_tag="DSY0042"
/db_xref="GeneID:3955774"
CDS complement(42350..42952)
/locus_tag="DSY0042"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516275.1"
/db_xref="GI:89892788"
/db_xref="GeneID:3955774"
/translation="MEGVNMNRKKKQEAREKASTRQLMGIEGITSHSLATPHGELVFF
MIKPTNISVLSDASIGARIYALMNVLKGISDIEMLCLNSRENFEDNKSYLKARMDAEQ
NPVIRKLLAQDQTALDRMQVQMATAREFLIIIRLKNEKESDVQPYLSRIEKSLKDQGF
TVRKAGESDIKRLLGVYYEQNVTTEVYEDYDGERWVILNE"
gene complement(42940..43197)
/locus_tag="DSY0043"
/db_xref="GeneID:3955775"
CDS complement(42940..43197)
/locus_tag="DSY0043"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516276.1"
/db_xref="GI:89892789"
/db_xref="GeneID:3955775"
/translation="MYLYPDNLRSKATLWLWELRDIGIIGVGLLISVFALSRLGWLPP
IVLTAVYAFLSIRFEDVSILDFIRYAAAFFFGKQQTYEWRA"
gene complement(43201..45366)
/locus_tag="DSY0044"
/db_xref="GeneID:3955776"
CDS complement(43201..45366)
/locus_tag="DSY0044"
/note="similarity to COG0270 Site-specific DNA
methylase(Evalue: 2E-34)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516277.1"
/db_xref="GI:89892790"
/db_xref="GeneID:3955776"
/translation="MTMGSLFDGIGGFPLAAVRNGIAPVWASEIEAFPIEVTKIRFPE
MLHVGDITKLNGAKLPPVDVICGGSPCQDLSVAGQRAGLAGARSGLFMEQTRITKEMR
KADEQRNVPAHLVRPRYLVWENVPGAFSSADGEDFRAVIEEIIRIKYSACDVPRPESG
RWESAGAALLGDEFSLAWRVMDAQFWGVAQRRRRIFLVADFGGTTAPEILFKQDGLFG
DTPESGGPRQGTAAPAEGSADAAGGACLTPWDVQSRRIFEETGTWPALYSGEGGGHGY
IQTEEKTAIAFAANQRDEVRDLHDVAGAIQAQPGMKQQTFVAQPLICLNDQGGNRMDI
TEEVTSTLRAGMGGHPPLVSQPNCLNGWDTQQSRVFTPEGMAPTLAGADGGGGRNPAG
LLFAAGVVSKGDGDCFLMPEVHTAITGGGGQAGQGYPCVLTAGFCGNASAEARGIGYQ
AECSPTIKTGTAPSVLCLNDQGGSQMHCTEDITGTLRAQEHGHQPLVFENHGIDSRYS
GPHAVAPTMSARMGTGGNNVPLVGTPVAFSLDSKESNSMKSANPYSGCRETDVARTID
TGSPDPSKNQGGIAILQETICIAGNTIDREPENGGNGLGCQPDISYTITTSDRHAVCE
PYQEVVGALCRGDEKGIGSQYVSQNKCIVERRNLIRRLTPLECERLQGFPDGWTLIPG
ASDSARYKALGNSVAIPCVDFVLRGIAYFLQKIYEEQEE"
misc_feature complement(<44770..45366)
/locus_tag="DSY0044"
/note="Cytosine-C5 specific DNA methylases; Methyl
transfer reactions play an important role in many aspects
of biology. Cytosine-specific DNA methylases are found
both in prokaryotes and eukaryotes. DNA methylation, or
the covalent addition of a methyl group...; Region:
Cyt_C5_DNA_methylase; cd00315"
/db_xref="CDD:238192"
misc_feature complement(order(45157..45159,45163..45165,45211..45222,
45274..45285,45331..45348))
/locus_tag="DSY0044"
/note="cofactor binding site; other site"
/db_xref="CDD:238192"
misc_feature complement(order(44785..44787,44791..44793,44989..44994,
44998..45000,45106..45108,45124..45126,45133..45144,
45151..45156,45163..45165))
/locus_tag="DSY0044"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238192"
misc_feature complement(order(44785..44787,44791..44793,44992..44994,
44998..45000,45142..45144,45154..45156,45163..45165))
/locus_tag="DSY0044"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:238192"
misc_feature complement(43243..>43548)
/locus_tag="DSY0044"
/note="Cytosine-C5 specific DNA methylases; Methyl
transfer reactions play an important role in many aspects
of biology. Cytosine-specific DNA methylases are found
both in prokaryotes and eukaryotes. DNA methylation, or
the covalent addition of a methyl group...; Region:
Cyt_C5_DNA_methylase; cd00315"
/db_xref="CDD:238192"
gene complement(45771..46724)
/locus_tag="DSY0045"
/db_xref="GeneID:3955777"
CDS complement(45771..46724)
/locus_tag="DSY0045"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516278.1"
/db_xref="GI:89892791"
/db_xref="GeneID:3955777"
/translation="MHGVPFLCSQKGGENPMFIWDFVLGTVMDQIIEWLYGQVVGFLA
DFFAQMGNMGVELFEMSWVQSIVLFFSYLAWALYGTGLVVSAFETGIEYQHGRGSVKD
TALNAIKGFMAVSLFTIVPVELFKLSVNLQSSLTAGITGYGSSFGDLAGNIISELGSS
SDIGGAMGSGVFGGLSVITSPILLLFMIIMMGYAVIKVFFANLKRGGILLIQIAVGSL
YMFSVPRGYIDGFTQWCKQIIGLCLTTFLQATILAAGLMVLRTHALLGLGLMLSAGEV
PRIAGAFGLDTSTKANLMSAVYTAQAAVNTTKTVVQAVAPK"
gene 47293..48165
/locus_tag="DSY0046"
/db_xref="GeneID:3955778"
CDS 47293..48165
/locus_tag="DSY0046"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516279.1"
/db_xref="GI:89892792"
/db_xref="GeneID:3955778"
/translation="MDTALTLRVACEEGKCLENDQISSLLSQSALVRKLTTDFVDHPL
FAVFRIMGLSEIPYMERLPYTQKMVDYINRNIATAQGFSCLGGMEEIVPCYNAMLLEA
YCRLGLADSKEAQAALSWIEQYQLFERNQTTSWPHKGVCKHGGCLGKTPCYIGISKTV
RALTTYSEFVKHENWNVEKLLVQGTGYMLRHKMFQRLSDGKPISAHITDIMFPQSYAL
SLTDLTYIVGKRQLMTSEDSSELLHLLQEKQIAENQWKIDYLYSYKGYVGFESKRKAS
EWVSALFPIWLSKS"
gene 48443..49285
/locus_tag="DSY0047"
/db_xref="GeneID:3955779"
CDS 48443..49285
/locus_tag="DSY0047"
/note="similarity to COG2207 AraC-type DNA-binding
domain-containing proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516280.1"
/db_xref="GI:89892793"
/db_xref="GeneID:3955779"
/translation="MKMRGNDLITQNDKQFNMFPSHIGLRKYILYYNIVFPENDTFMA
QYTLMPNACGTLSLAFDGTAVIAELWGASLTPVLLGMEPNNYHVLLLIQLSPYGLYQI
THQSQAEFAGKRLSLVDIDNELFHSLYQAFIMSKTTIELVNTCEKILYRRMENPLISD
ALLLATTVISDSCGQVQVKEVARQCGYSERQLNRLFLTQIGINIKNYARLTRFNYVLK
HIQTSPCFFAALSQQAGYFDQAHFDKDFKAISGVSPQDYLKTMSDFYYDGMGIYDTIS
SKED"
misc_feature 48974..49216
/locus_tag="DSY0047"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
gene 49289..49759
/locus_tag="DSY0048"
/db_xref="GeneID:3955780"
CDS 49289..49759
/locus_tag="DSY0048"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516281.1"
/db_xref="GI:89892794"
/db_xref="GeneID:3955780"
/translation="MKYQGCLLAVKNIAASKQFYEKVLHQNVVMDIGVHVTFEGFSLQ
QGYAELVGLADDSVKEQSHNFQVYFEVEDLDKVYAEMKSISDLQWVHEIKEYPWGQRD
IRVYDSDKHIVEIAEDMNTVIKRFLKQGMPVEEVAKRTMFPLEVVKQYSLCFDK"
misc_feature 49289..49645
/locus_tag="DSY0048"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_23; cd09011"
/db_xref="CDD:176713"
misc_feature 49304..49633
/locus_tag="DSY0048"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:216182"
gene 49756..50541
/locus_tag="DSY0049"
/db_xref="GeneID:3955781"
CDS 49756..50541
/locus_tag="DSY0049"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516282.1"
/db_xref="GI:89892795"
/db_xref="GeneID:3955781"
/translation="MTNSGFGKSKPLFYSKRRRVSMNWEPWTGCYKISDGCTNCYFYG
PHAKRYGQNTIQKTDKFDWPIRKTAKGEYNIKGNKILATCFATDFFLPEADEWRKEVW
SIIKERTDIDFLILTKRIDRFLISLPSDWGAGYDNVNIGCTVENQRLADERLPLFLSY
PIKRRFIACAPLLERIDLTPYLHGIDHVTVGGETGREARVCDYDWVLNIREQCVKANV
TFWFKNTGSLFKCDGVVEKINPFKQTSIAKDFDINILDGKRLF"
misc_feature 49819..50448
/locus_tag="DSY0049"
/note="Phage protein Gp37/Gp68; Region: Gp37_Gp68;
cl15384"
/db_xref="CDD:246943"
gene complement(51538..53325)
/locus_tag="DSY0050"
/db_xref="GeneID:3955782"
CDS complement(51538..53325)
/locus_tag="DSY0050"
/note="similarity to COG3344 Retron-type reverse
transcriptase(Evalue: 1E-46)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516283.1"
/db_xref="GI:89892796"
/db_xref="GeneID:3955782"
/translation="MQNHSSDRSYTFERLYRNLYNRELFLLAYQNIYASQGNMTKGTD
GKTIDAMSLNRIDGIIASLKDESYQPQPSRRTYIPKKNGKLRPLGIPSFDDKLVQECV
RLLLEAVYEGSFAKTSHGFRPNHSCHTALSQVQVCFTGVKWFVEGDIKGFFDNINHEV
MIGILAEHIKDERFLRLIRKFLKAGYLEDWQYHNTYSGTPQGGIISPILANIYLDKLD
RYMEELKKRFDKGKARAVYPETYELEKKRGVLAKKLRNTNSEEEKQVLTEKIREIDRK
KLTIPYSDPFDTSFKRLQYVRYADDFLIGVIGSKEDAIAIKEQVKAFVADMLILELSD
EKTLITHSEKRARFLGYDIYVRRSAATKKDKTGRLCRHLNGTVCLEMPTELMRKKLLE
YGAMTIEKTVYGKDNWKAKARYYLKDNDDLEILDQYNSEIRGFRNYYRIANNAAHASS
FGYIMQYSMFKTFATKYRTTMRRMIGKLRTGKNFGVRFTDKKGKTKTRLFYNEGFARK
PLQKNAVVDVIPKTVMYSSKTSLMARLSAGQCELCGKTDCEIEIHHVRKLKDLKGKSY
WERFMIARNRKTLALCLDCHEKLHSGKLN"
misc_feature complement(52645..53295)
/locus_tag="DSY0050"
/note="Retron-type reverse transcriptase [DNA replication,
recombination, and repair]; Region: COG3344"
/db_xref="CDD:225881"
misc_feature complement(52267..53106)
/locus_tag="DSY0050"
/note="RT_G2_intron: Reverse transcriptases (RTs) with
group II intron origin. RT transcribes DNA using RNA as
template. Proteins in this subfamily are found in
bacterial and mitochondrial group II introns. Their most
probable ancestor was a retrotransposable...; Region:
RT_G2_intron; cd01651"
/db_xref="CDD:238828"
misc_feature complement(order(52276..52281,52423..52428,52432..52434,
52720..52725,52867..52884))
/locus_tag="DSY0050"
/note="putative active site [active]"
/db_xref="CDD:238828"
misc_feature complement(order(52426..52428,52723..52725,52867..52884))
/locus_tag="DSY0050"
/note="putative NTP binding site [chemical binding]; other
site"
/db_xref="CDD:238828"
misc_feature complement(52720..52722)
/locus_tag="DSY0050"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:238828"
misc_feature complement(52267..>52473)
/locus_tag="DSY0050"
/note="Reverse transcriptase (RNA-dependent DNA
polymerase); Region: RVT_1; pfam00078"
/db_xref="CDD:215698"
misc_feature complement(51832..52206)
/locus_tag="DSY0050"
/note="Type II intron maturase; Region: Intron_maturas2;
pfam01348"
/db_xref="CDD:216449"
gene complement(54255..54572)
/locus_tag="DSY0051"
/db_xref="GeneID:3955783"
CDS complement(54255..54572)
/locus_tag="DSY0051"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516284.1"
/db_xref="GI:89892797"
/db_xref="GeneID:3955783"
/translation="MEMTVMKEGHPYVDTRGFLQRYSAFVPDDYIILKLEQRHQNGEW
VRWNQEMPRGCSAELLAQAEEFSALKKGFRGDLKFYQNPQVLAVAPLLEEQTPGMDMT
MQL"
gene complement(54739..56364)
/locus_tag="DSY0052"
/db_xref="GeneID:3955784"
CDS complement(54739..56364)
/locus_tag="DSY0052"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516285.1"
/db_xref="GI:89892798"
/db_xref="GeneID:3955784"
/translation="MTAFADTGGSGNIDGGGGGMGQGTSTNSWNGGNEGVRVTVVRAS
DHAVVTTPFDFTNKAPSAGIYHFGKVSKLQYNNGVSLSPVKGGYVYKNPGQTMPRIIS
TNGSNNIEIIKKYFCSEYVVKRIAEITGMNYDVLIGGEYKILLEPLAYYKFEGNMFAT
TATEAALYDEQTSGLLRRRMVSLTHKNLPLAMFLEVSDLGYPAWGGSKTSAATNADIK
SSLGLGIVRFEEKPEAPQIEAYDYEYRVNTDVITAVRISGGQSDPDNPTRISFNIGGK
NYNVGNVYYPDGDSQLAWVKWTTPDTEQNMTIDVTVSGPGSTAKTTLNVKIVDLDKNP
PPNPVADDRNDSFSHTPVPSRAVKSTASWSVWSPWWQEYWVWHGDDEDGYWCDHGWWE
FDLDRYSASLTANMSIQCDSKNPTASGRTMKSGYGINQTVAGSVSSNQSSAVTQPQNA
VSYFPEFGYETYWRLLERMGSGRFEFQVNSYSTYKNRTHFSPIWMPDGAYTINTWLID
AWTPDGMLSANLTNSLTIRGNLWQDWHAGPIQP"
gene complement(56495..57049)
/locus_tag="DSY0053"
/db_xref="GeneID:3955785"
CDS complement(56495..57049)
/locus_tag="DSY0053"
/note="similarity to COG0810 Periplasmic protein TonB,
links inner and outer membranes"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516286.1"
/db_xref="GI:89892799"
/db_xref="GeneID:3955785"
/translation="MKNMNPKIKKWLAVAGGLALCAVLVVLIGQRFHTEKPVDDPLPS
QSSEVSDVTVDPNEPDSTKEKEVSVTLPDTSQPTSTDNGAVSGGTEQTIQSDAIKPEY
TENQLKDPTQKPNGEKVPEPPTAVDHDKVEQPKETPKSESTSKPSGGGNSIPGFDNVP
DGGANHGEVVDGDGDINKQVGIMD"
gene complement(57160..57708)
/locus_tag="DSY0054"
/db_xref="GeneID:3955786"
CDS complement(57160..57708)
/locus_tag="DSY0054"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516287.1"
/db_xref="GI:89892800"
/db_xref="GeneID:3955786"
/translation="MTDIIKKILRGKGGAGFPLIIAITLSLVIIFTGISEYFRLMIIA
QGVRDAVQAAVISTVVENYDDVYHGVREGYSGAYQPYAGDFEESLDYGDIYDRLDGIL
GLSNSSGYHEKRTPDGKLEFKVWNLDVDIRNAPLASGDQASARFEADSTILLEVPVSF
GGKLLPPMTIKVKTSAGYIPRF"
gene complement(58094..58801)
/locus_tag="DSY0055"
/db_xref="GeneID:3955787"
CDS complement(58094..58801)
/locus_tag="DSY0055"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516288.1"
/db_xref="GI:89892801"
/db_xref="GeneID:3955787"
/translation="MKSLHPSAGCSKGGANQVTEQEMMTLLRKKLDSGMALYQKEWQK
RSASELVDMASEIAAAKFVYGELSGGSYSSEYMEYLLRFENPLEVVKDQWISEQTVDF
SEELTHALWTLWDKGESESEYTLDPEYAPVSAEEARITLWEFIEAHPNAAFDMMTPGG
YVYLTPETAQLLLSGHSVKGNPDSAEFARDIPAEELLEQEICTADFSKGAWRILSDRN
PEPRQAQEPFEQGVTMC"
gene complement(58767..59537)
/locus_tag="DSY0056"
/db_xref="GeneID:3955788"
CDS complement(58767..59537)
/locus_tag="DSY0056"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516289.1"
/db_xref="GI:89892802"
/db_xref="GeneID:3955788"
/translation="MLSAGKQAKAKPKTTDVLLRNAAVRLARYIRMDEYKKSRMANVL
SAAGLSDSPELFTAMAIVKAAAIALCILPCLIVLPLLAPIVLFAAILVYFKEIRKADE
ALAAKRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFAAELDILTADMRS
SSYEAALTRFEARFNSPMLSDITRGLIGVLRGDDGGMYFQMLAHDMKQLELQRLKAQA
MKIPPKIRVFSFAMLMCFLMTYMAIIVYEIVTSLGGMF"
gene complement(59650..60579)
/locus_tag="DSY0057"
/db_xref="GeneID:3955789"
CDS complement(59650..60579)
/locus_tag="DSY0057"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516290.1"
/db_xref="GI:89892803"
/db_xref="GeneID:3955789"
/translation="MTTVLLIACIGMIAGSFILLGLTPIEFTTAVFGKLTDRPKSLRD
EVGEFTHRKKQSYLRRQIAEVQSILKVTGRTARFPMLCALSLLFFAVGASIAVMLSNF
FLVPVMAMGCMLLPFWWVKLTASHFKKDIAAELETALSIITTAYLRNEDILTAVEENL
PYLNPPVLSVFKGFVSRVRLVDPNVTAALHDVKMRIDNAVFHEWCDALISCQHDRSLK
TTLTPIVSKLSDMRVVNGELENMVFEPRKEFIIMVVLVVGNIPLMYFLNQDWYHTLMH
TPLGQIVLTICAAVIFVSTAFVIKFTQPIEYRR"
gene complement(60576..62183)
/locus_tag="DSY0058"
/db_xref="GeneID:3955790"
CDS complement(60576..62183)
/locus_tag="DSY0058"
/note="similarity to COG0630 Type IV secretory pathway,
VirB11 components, and related ATPases involved in
archaeal flagella biosynthesis(Evalue: 6E-27)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516291.1"
/db_xref="GI:89892804"
/db_xref="GeneID:3955790"
/translation="MLGKKRNPSLFSSDKKSSQAVPQEPKTFENMDISPDANTIQVVV
LNETTELTIPENLTQYSSYDGTIPPEMQEPPKRTVLAEVTVGHRAQSLFFTPEAEGKD
FSSVLADVQEYISEHYSTLITTGGEDAKAQLKRYITKYVQDHRISVNGMSGGKLADTL
YTEMAEFGFLTKYIYGTGIEEIDINSWRDIEVQYSDGRTVKLEERFESPQHAVNVIRR
MLHISGMVLDNASPIVLGHLSKNIRIAVLKSPIVDEDVGVAASIRIVNPQSMKKEDFV
KSGTATDPMLDFLSLCVRYGISVCVAGATSSGKTTVAGWVLTTVPDNKRIYTIENGSR
ELALVREKDGKVVNSIIHTLTRDSDNERQRIDQTNLLDYALRFNPDIIVVGEMRGAEA
NAAQEAARTGVAVLTTIHSNSCEATYRRMVSLCKRAVDMSDATLMDYVTEAYPIVVFC
KQLENKQRRMMEIQECEILPDGTRCYRPLFQYVITENRMEDGKFIIEGHHEQINSISD
SLAKRLLENGMPQPVIESLRGKEAQSA"
misc_feature complement(60729..61808)
/locus_tag="DSY0058"
/note="Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion]; Region: CpaF;
COG4962"
/db_xref="CDD:227297"
misc_feature complement(60798..61367)
/locus_tag="DSY0058"
/note="RecA-like NTPases. This family includes the NTP
binding domain of F1 and V1 H+ATPases, DnaB and related
helicases as well as bacterial RecA and related eukaryotic
and archaeal recombinases. This group also includes
bacterial conjugation proteins and...; Region:
RecA-like_NTPases; cl17233"
/db_xref="CDD:247787"
misc_feature complement(order(61254..61262,61272..61277))
/locus_tag="DSY0058"
/note="Walker A motif; other site"
/db_xref="CDD:238540"
misc_feature complement(order(61026..61031,61191..61196,61200..61202,
61254..61262,61272..61274))
/locus_tag="DSY0058"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238540"
misc_feature complement(61029..61043)
/locus_tag="DSY0058"
/note="Walker B motif; other site"
/db_xref="CDD:238540"
gene complement(62177..62644)
/locus_tag="DSY0059"
/db_xref="GeneID:3955791"
CDS complement(62177..62644)
/locus_tag="DSY0059"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516292.1"
/db_xref="GI:89892805"
/db_xref="GeneID:3955791"
/translation="MRKGENEYTYPPYEQLQAQELMDGLREIAPFVVVDCGSYIANDI
LSAVALMEADSVLRLAGADLKSVSYLSSQLPLLRDSKWDAEKQYKVASNVKPQQAGEQ
IGQALGSVAFTLIHSQELEEQYLAGNLLADLSLKDSRLFRREIEKIAKEVFGC"
gene complement(62992..63816)
/locus_tag="DSY0060"
/db_xref="GeneID:3956047"
CDS complement(62992..63816)
/locus_tag="DSY0060"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516293.1"
/db_xref="GI:89892806"
/db_xref="GeneID:3956047"
/translation="MSLFKNRTVVGVICILLSLLICFGVTPLFNKSVSQKTEIVRVVK
EIKAGDEITKDTVQTVEVGGFGLPDNVIRQSETVIGKYAKSDLSIGDYILNTKLSDTP
AAENAYLYNLDGTKQAMSVTIKSFANGLSGKLQSGDIVSVIAADYKKQGTTVIPAELK
YVEVISVTASSGYDANTGEAKSEDDDRELPSTVTLLVSPEQSKVLAELESDGKLHLSL
VYRGTPTNTAKFTEAQDKVIAALYPVEVSQDSSSEPKSQESEESTASETPAESEVQ"
misc_feature complement(63163..63717)
/locus_tag="DSY0060"
/note="Flp pilus assembly protein CpaB [Intracellular
trafficking and secretion]; Region: CpaB; COG3745"
/db_xref="CDD:226268"
misc_feature complement(63523..63705)
/locus_tag="DSY0060"
/note="SAF domains of the flagella basal body P-ring
formation protein FlgA and the flp pilus assembly CpaB;
Region: SAF_CpaB_FlgA_like; cd11614"
/db_xref="CDD:212159"
gene complement(63977..64429)
/locus_tag="DSY0061"
/db_xref="GeneID:3956048"
CDS complement(63977..64429)
/locus_tag="DSY0061"
/note="similarity to COG1989 Signal peptidase, cleaves
prepilin-like proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516294.1"
/db_xref="GI:89892807"
/db_xref="GeneID:3956048"
/translation="MQDNGIAQAVLFFCLLLVASVWDLRKRIIPDSICLLIVLTGLID
FSPVRLWGVLAALPLLIAALYKPDGIGGGDIKLTAAAGIVLGFWGCTAGLTLGLMASL
FFYFWTQAIRRLRKLEPLKTSQASLPMAPFLSLGFLAVIILRIGGNIL"
misc_feature complement(64169..64402)
/locus_tag="DSY0061"
/note="Type IV leader peptidase family; Region:
Peptidase_A24; pfam01478"
/db_xref="CDD:216522"
gene complement(64662..68657)
/locus_tag="DSY0062"
/db_xref="GeneID:3956049"
CDS complement(64662..68657)
/locus_tag="DSY0062"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516295.1"
/db_xref="GI:89892808"
/db_xref="GeneID:3956049"
/translation="MKKKMKRPLGIILAACLVVSLFAGSAYGVNRYFEDAKGHWAEEA
IQILTEKGVISGYPDGLAHPDEIITRGEFAALIARTMELPEPDESEVTIHFVDIAGHW
SEQNVEALIIAGIIQKDDFGTKFLPDEPITRMEMIRMLVRAIGKGDHDASCPCVTGFS
DDSALSDADKSSICTGKEYGIVNGYPDGTVKPDGKATRAEAFEMLVDTEKAKEQIKKE
EPPKPPVVTPTPPVTPKPGDKPSGGGGSSGGSSDGGGSGGGGSSYVHAPQFSFTLPKT
AYTADEIEIKPESRYVSGVTWSALKNGLPAELSELTEGTLTANGGKVKFTQTGSITLI
ATAENSRGATVTHEQTVSIYPVVTATFTLPETAHTDTAVPVELATENLGINSVVWSLQ
KNGAIANIDEALTGELTATGGTVLFKEKGSYTLTASITDELGKTVTVENSITVYPVAE
VNLILPAVSHTDKTVALKTETKETDGLTLTYTLTRNSESADISTWIEGNPSAGSIRFK
EKGVYALTASVTDATGRVFAGTADITVYPVGSAGFYLPEVFHTDKEVVVEAVFDEIGS
HTAKWSLMHDGKEVSLTDAAEGALGNSGGKLKFRSKGSYVLKAEFTDDGGRSYRYEQS
FVAYPVPTVTYSLPKYAHTDTDIVVKTEAADLDGLTIEWLVDNTFGFQDWPTYVDGKL
SNDGGTIRFKRAGIYELVARITDDTGRVFLYESKDRCEVLPVLTIGFELPAFAYTDTA
IDLRTHGNNNVLPVEWSVSKNGKSIRLSEAFNGNLTPQGGKITFKGDGEYVLTAAMTD
YLKRSYSHSESIRILPVVQYAFTMPQTVHYGAEFTVAAKDVQHIGSYAAVWTLQKDGN
TAPYQGTLGNDGGKIAIRDTGAFTLTASVTDREGRVTTHSERITVTNTAPNAPVVKAE
PTRTAKDGKFLVTITANATDPDGDAVTLEYADTAADSYYALGTHTIRVRAKDIAGAYS
AWTEKTFTVTNAAPTVTLTAVPSRTVKDGKFHVDISATAADADGDATTLEWENKAADG
YYSPGTHTVKVRAKDIAGVYSPWAEKTFTITSSAPTVTLTAAPTRTASGGKFLVNITA
KATDVDDDATTLEWENKADDNYYAVGTHTVRVRAKDATGLYSQWVSKTFTIANSAPTA
PVITRTPGGNSVAPGTPVTITATSSDPDGDAVTLIWEGRNTETQTYPRGKNVVRVKAV
DSAGAESPWAAIVFFVADSNGGGGMTLTGPDSVIMENGIEGATITEYTFTVPPVSGHS
GSDFGRVRGYNKLTGQWDQLDYGTTSNGITFTRSFGAGVYTQLEMYYYTNHDCMYNKS
NITYSVTYHFE"
misc_feature complement(68436..68561)
/locus_tag="DSY0062"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:215897"
misc_feature complement(68247..68375)
/locus_tag="DSY0062"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:215897"
misc_feature complement(68055..>68141)
/locus_tag="DSY0062"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:215897"
gene complement(68668..69027)
/locus_tag="DSY0063"
/db_xref="GeneID:3956050"
CDS complement(68668..69027)
/locus_tag="DSY0063"
/note="similarity to COG2088 Uncharacterized protein,
involved in the regulation of septum location"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516296.1"
/db_xref="GI:89892809"
/db_xref="GeneID:3956050"
/translation="MPKNTTPAVPKYDVKIHSIRPEGSCKATASVNIYGDFAVRGIKI
MDGSKGLFVSMPSYKAGNGEYRDICFPCTKDAKAEFDKAVLGAYQQALTQGQATAQKQ
EFPEPQQAQSQPVMGGM"
misc_feature complement(68776..68991)
/locus_tag="DSY0063"
/note="SpoVG; Region: SpoVG; pfam04026"
/db_xref="CDD:146585"
gene complement(69381..69950)
/locus_tag="DSY0064"
/db_xref="GeneID:3956051"
CDS complement(69381..69950)
/locus_tag="DSY0064"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516297.1"
/db_xref="GI:89892810"
/db_xref="GeneID:3956051"
/translation="MGGENMPGITLKNGLISYYGNPAGYTEKEKAVVDSIFQNDELST
WLKNRSLTPQWTDGVMERLLAGEHPGCIETAAPLKNVRIWQLKPDVDIHMKFIPYEEM
VRQFGNPSPEHYRIAYDGQLNTNDLETIYARCNVNHPPGYDGHSLSMSDIVELYDDSG
SEFHYCDRFGFQKISFGEPEQTQTMGMSM"
misc_feature complement(69423..69719)
/locus_tag="DSY0064"
/note="YodL-like; Region: YodL; pfam14191"
/db_xref="CDD:222585"
gene complement(69977..70357)
/locus_tag="DSY0065"
/db_xref="GeneID:3956052"
CDS complement(69977..70357)
/locus_tag="DSY0065"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516298.1"
/db_xref="GI:89892811"
/db_xref="GeneID:3956052"
/translation="MTIHLAKACGLCNNCSDEKSEAGAECDCGNNPSEWVANCSLCHD
LLDESQSIHIPDYLLEEAGIPKGAKLEAYTDGNSGEITVVEADIQQDLGDVPPCILSV
LAQSGICLAALDELIMQESIIYGK"
misc_feature complement(<70073..>70186)
/locus_tag="DSY0065"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cl01709"
/db_xref="CDD:242664"
gene complement(70565..71563)
/locus_tag="DSY0066"
/db_xref="GeneID:3956053"
CDS complement(70565..71563)
/locus_tag="DSY0066"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516299.1"
/db_xref="GI:89892812"
/db_xref="GeneID:3956053"
/translation="MKMDKNTFWQIIDSVNSEVSGSDLEGVLRVTQEKLEDYNPQEIA
AWANFLGQYRDFADTSGVFAASCILNDYMSDDGFMDFRAWLISRGKEVYLAALKNPDT
LAGIDIPEDTRFESYGYVAYDAYREICEDDVYAEMDANPLTKAQKDDIRAEIEYYPHE
VDGTHIKDHLPNLCAKHLESLEEFHFTYREGPERMLHMTDLEKLKSAAKLIESMTGSR
FKSYGGGSFIYPESSSDSYLAINMRRETDFDANLYRIHFDVNIQTTGSHPMDSTELMR
LQREVGVAHALLTALEMQTYSLTPEEMQAFDDFIREQEELRETQEQTGAPIMGQTF"
misc_feature complement(71180..71557)
/locus_tag="DSY0066"
/note="Protein of unknown function (DUF4240); Region:
DUF4240; pfam14024"
/db_xref="CDD:222501"
gene complement(71560..72390)
/locus_tag="DSY0067"
/db_xref="GeneID:3956054"
CDS complement(71560..72390)
/locus_tag="DSY0067"
/note="similarity to COG0338 Site-specific DNA methylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516300.1"
/db_xref="GI:89892813"
/db_xref="GeneID:3956054"
/translation="MSWIGGKKALRELIVTLFPLYYERYIEVFGGGGWILFHKFPGND
FEVYNDFNGLLVNLYRCVREKPEELMDALRYVLNSRADFELVRNALARDSPASDVQRA
AWFYQLIRYSYASGLTSYGSQPHDMRSNFPLIEQAHRRLAKVVVENKDFERLIGQYDR
PVSFFYCDPPYFETESYYKNVGEDGFTEKDHIRLRDALMRAQGKFLLSYNDCGFIRDL
YDAPGIQIDSYTRINNIKQRYDNGAQFPEILIANYDMQERMRDGPMQLNLFGEGGFLE
"
misc_feature complement(71626..72384)
/locus_tag="DSY0067"
/note="Site-specific DNA methylase [DNA replication,
recombination, and repair]; Region: Dam; COG0338"
/db_xref="CDD:223415"
gene complement(72399..72734)
/locus_tag="DSY0068"
/db_xref="GeneID:3956055"
CDS complement(72399..72734)
/locus_tag="DSY0068"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516301.1"
/db_xref="GI:89892814"
/db_xref="GeneID:3956055"
/translation="MMPQEQLAEYLHRYHHGAENAVTSKTMEYAFRISGKELRDLVNA
LRREGIPIASDQSGYFYAKTEAEVRLTIRHMKSRISGINAAITGLKRSLAAFDDTQIR
LPLEGGDDF"
gene complement(72935..74191)
/locus_tag="DSY0069"
/db_xref="GeneID:3956056"
CDS complement(72935..74191)
/locus_tag="DSY0069"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516302.1"
/db_xref="GI:89892815"
/db_xref="GeneID:3956056"
/translation="MDKQLENMPPEQCLFMKVEISRPGSFGAETSSTLTLPAAPYEIL
DALDKARITDERVIYSAEVIGCELDYLPQFIGTNANLYELNHLAERLSSLSAGELDCF
EGMVMMDTIQTQYSPIAIDRLINMTHSMKDCHVVYEAHDDSTLGKFYADNDFVQKLEN
VPDEIYECLDFGKIGKEMREGEGGVFTPHGYVIQNGEIAAEYHSGDAVPLEKLDYTML
LRVTKGDFNDPQYDNDLVAFLKLPADDKMLSQAVEVVEAASPEECVFSAVDCMIPSLT
EKINDALYESDGDCYGLVNELAEQLQRINNKGNISTYKAMMEVVQTEISLEDALDLSQ
EIEKFSVIREAASPADYARSMLSKYCIEYESELFSRTDLYGYGSKLMEEKEVALTEYG
VLWSLTGQTVEQCLNRPSQSHGMEMK"
misc_feature complement(73616..>73978)
/locus_tag="DSY0069"
/note="Antirestriction protein (ArdA); Region: ArdA;
cl01953"
/db_xref="CDD:242798"
gene complement(74184..74912)
/locus_tag="DSY0070"
/db_xref="GeneID:3956057"
CDS complement(74184..74912)
/locus_tag="DSY0070"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516303.1"
/db_xref="GI:89892816"
/db_xref="GeneID:3956057"
/translation="MRDYQGLLKFVKEQYPPGTRIRLIEMQDPYAPVPPGTEGEVDFI
DDAAQIHMKWSNGRSLALIPGVDRFTVIPQHLQTLKLYMPLAVMQYERDELGSLEEYP
SELDQGTVLSYHDQILAAILKERTPEKTERGLMKYYHEDDGVGQKVKSLFFTVEQVGS
KLMGVAECRVQGDLGDAELEQLKDYVSGQASDGFGEGFEQHPIKVGSDELYVSLWTAS
KGWSISTKDELEATGQQMGGMQLG"
misc_feature complement(74697..74867)
/locus_tag="DSY0070"
/note="Domain of unknown function (DUF4314); Region:
DUF4314; pfam14192"
/db_xref="CDD:222586"
misc_feature complement(74268..74534)
/locus_tag="DSY0070"
/note="Domain of unknown function (DUF4314); Region:
DUF4314; pfam14192"
/db_xref="CDD:222586"
gene 75494..76615
/locus_tag="DSY0071"
/db_xref="GeneID:3956058"
CDS 75494..76615
/locus_tag="DSY0071"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516304.1"
/db_xref="GI:89892817"
/db_xref="GeneID:3956058"
/translation="MCQFVLRCPSGPGAFILRSRFMKPKIYKTYRQLISILRSRGLNI
KQGSAGSRTMRILEKENYYNVINGYKDLFIQTPATDMTDEVYKTTATFDEIFALYSFD
REIRIIYLKYILKLENHFKTVVSHCFSQKYGHDNYLKLSSFQHEASSDSYELSHIAKR
NHLDMTADIDKIRQISAEDNVSNVTRLLGDIQQEIARQLNKHHQVVTHYMTQHGYIPL
WVLVNVLTFGKVTTFYRNLKEDDKIEIAKQFGINYKELHKYMTMMGFARNVCAHDERF
FDIRFSQRLHTKSIKNFSSLKLPRDKSGSYTKGTCDAYAIAIIFTQLLSKPDLKEFVS
SMNSEIKKLSKSLVTISADEVLSRMGYTTDWKEILNIVK"
misc_feature 75656..76327
/locus_tag="DSY0071"
/note="Abi-like protein; Region: Abi_2; pfam07751"
/db_xref="CDD:219553"
gene complement(76679..77248)
/locus_tag="DSY0072"
/db_xref="GeneID:3956059"
CDS complement(76679..77248)
/locus_tag="DSY0072"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516305.1"
/db_xref="GI:89892818"
/db_xref="GeneID:3956059"
/translation="MDMATDYSHLLAEYPEKICQDQFYKICRMSKRKATWLLENGYIP
CEDTGKKTRRFKIRITDVIEYLTRLEDSPESLLTPPGIFSSGIKYRPKRQTDIQIDAD
EFMEMLKKRWSSSPDALTVDDAVKLTGYCKTTVSEWITKKKLFGVWYYNKYLIPKDCL
IEYMATQAHRITQKSEKHMNLIAQYFDGR"
misc_feature complement(76748..76894)
/locus_tag="DSY0072"
/note="Helix-turn-helix domain; Region: HTH_17; pfam12728"
/db_xref="CDD:205047"
gene complement(78083..79327)
/locus_tag="DSY0073"
/db_xref="GeneID:3956060"
CDS complement(78083..79327)
/locus_tag="DSY0073"
/note="similarity to COG3385 Predicted transposase(Evalue:
1E-61)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516306.1"
/db_xref="GI:89892819"
/db_xref="GeneID:3956060"
/translation="MQDKDTTQSTFMQAFQPFFSKDLWETIHREVPGLDLRSQKLTTN
QLTLLISHAQLQEYRALRKISTSVHHDSLGQAIGLESISHSQISRRLKTLPTQVPEML
FKGTLHNVAQKQGYGKIRQQLGKLYMIDASTMSLCLSRYPWAVFRKSKAGVKMHLRLS
FDAMAVPDEVLVTPAKTADRKKLDELIVQDQEALNIFDRGYVDYKLFDDYCEKGIRFV
TRLKNNAVIEFTGVERPVKEDGLIEEDVDVILGAGSRKMKHTLREVTIDDNVHEPFTI
LTNDFNLSAEELGEIYRYRWQIELFFKWLKQHAQIKHFYGTSETAVINQILLALMMYC
LLVLLKLEAGYPRDLLTLQRLLIACLFERYEEFLEKLRRRRRKGSKRIRYEEIYRMTE
HSILKEEETQWLDDLTYDPVIL"
misc_feature complement(78350..78943)
/locus_tag="DSY0073"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
misc_feature complement(<78656..>78814)
/locus_tag="DSY0073"
/note="Transposase DDE domain; Region: DDE_Tnp_1_3;
pfam13612"
/db_xref="CDD:205790"
misc_feature complement(78350..>78742)
/locus_tag="DSY0073"
/note="FOG: Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3385"
/db_xref="CDD:225920"
gene 79713..79979
/locus_tag="DSY0074"
/db_xref="GeneID:3956061"
CDS 79713..79979
/locus_tag="DSY0074"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516307.1"
/db_xref="GI:89892820"
/db_xref="GeneID:3956061"
/translation="MYIIPIICYNLLEKHGILMRFIGMEYMKVKEAVEKWGLTDRRVR
ILCEQERINGVIKKGRSYLIPADAEKPIDGRKLRVKRPVYAMNL"
misc_feature 79788..79916
/locus_tag="DSY0074"
/note="Helix-turn-helix domain; Region: HTH_17; cl17695"
/db_xref="CDD:248249"
gene 79976..80383
/locus_tag="DSY0075"
/db_xref="GeneID:3956062"
CDS 79976..80383
/locus_tag="DSY0075"
/note="similarity to COG3177 Uncharacterized BCR"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516308.1"
/db_xref="GI:89892821"
/db_xref="GeneID:3956062"
/translation="MIEFTYNSNAIEGNTLTLQETALVLEGITIDQKPLKDHLEAVGH
RDAFVYVQQLVSNKVPLEERTIKEVHSLVLMDRPEDKGLYRRIPVRIMGAALEPQQPY
SVPKKMKQLINKKRGTMHPLERIAWFHLNAYFF"
misc_feature 79976..>80362
/locus_tag="DSY0075"
/note="Fic family protein [Function unknown]; Region:
COG3177"
/db_xref="CDD:225718"
misc_feature 80153..>80362
/locus_tag="DSY0075"
/note="Fic/DOC family; Region: Fic; pfam02661"
/db_xref="CDD:217170"
gene complement(80371..81228)
/locus_tag="DSY0076"
/db_xref="GeneID:3956063"
CDS complement(80371..81228)
/locus_tag="DSY0076"
/note="similarity to COG2207 AraC-type DNA-binding
domain-containing proteins(Evalue: 3E-27)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516309.1"
/db_xref="GI:89892822"
/db_xref="GeneID:3956063"
/translation="MGWIEGISDAINYIEDNITEELTIENISKQAFVSSFYFQKGFAM
LCGFTVGEYIRQRRLTLAGSELVSTDRKIIDIALKYGYDSPDSFTKAFLRFHGVTPTA
VRKDGAMLKSFAPLKIKFSLEGGFIMDYRIIEKEAFTVMGAAKVFKYDTAGTEIPKFW
TEHYQTGKDKIVCGMYGVCVDESMGSDEFEYLIADNYTTSSEIPDGFVTKVIPKHSWA
VFACKGAMPTSLQNTNQKIFSEWLPNCKDYEIAAGYNIEMYTNVADYPKGNQDENYYS
EIWIPVQKK"
misc_feature complement(81064..81189)
/locus_tag="DSY0076"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
misc_feature complement(80917..81168)
/locus_tag="DSY0076"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(80914..81027)
/locus_tag="DSY0076"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
misc_feature complement(80380..80844)
/locus_tag="DSY0076"
/note="Bacterial transcription activator, effector binding
domain; Region: AraC_E_bind; smart00871"
/db_xref="CDD:214874"
gene 81434..82000
/locus_tag="DSY0077"
/db_xref="GeneID:3956064"
CDS 81434..82000
/locus_tag="DSY0077"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516310.1"
/db_xref="GI:89892823"
/db_xref="GeneID:3956064"
/translation="MEYKQRDYPLFSACGLNCGLCPRYQMNGASQCPGCAGKDFLAKH
PKCGVLSCSQRKEFTYCYQCDEFPCPKYDGADQSDSFITHLHQFRDMEKAKRWGIEAY
RQELNEKVSMLEQLLANYDDGRRKSLFCLAVNLLETEDIKHVLEQLTSEVQSDAPLKE
KAASAVCLLQAMAEQRKITLKLRKKSKL"
misc_feature 81461..81655
/locus_tag="DSY0077"
/note="Protein of unknown function (DUF3795); Region:
DUF3795; pfam12675"
/db_xref="CDD:205010"
gene 82587..82928
/locus_tag="DSY0078"
/db_xref="GeneID:3956065"
CDS 82587..82928
/locus_tag="DSY0078"
/note="similarity to COG1733 Predicted transcriptional
regulators(Evalue: 7E-22)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516311.1"
/db_xref="GI:89892824"
/db_xref="GeneID:3956065"
/translation="MVSCPTKCPCMEYCPLGSALKIIGGKWKLPILCALHQDGTTRYN
TLKRKIAGITNTMLVSSLKELEEDGLIVRRQYMEMPVRVEYTLTDVCDDLMPILKQLA
QWGVKVHTKES"
misc_feature 82626..82907
/locus_tag="DSY0078"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1733"
/db_xref="CDD:224647"
misc_feature 82650..82901
/locus_tag="DSY0078"
/note="HxlR-like helix-turn-helix; Region: HxlR;
pfam01638"
/db_xref="CDD:201897"
gene 83293..83541
/locus_tag="DSY0079"
/db_xref="GeneID:3954212"
CDS 83293..83541
/locus_tag="DSY0079"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516312.1"
/db_xref="GI:89892825"
/db_xref="GeneID:3954212"
/translation="MIDEKVMVNDVLSSVKSSLTFYANTISECANPELRSTIQQIRNN
DEASQYQLFQMAQAKGYYKPALMAKDDEIQQTKSQVSS"
misc_feature 83299..83487
/locus_tag="DSY0079"
/note="Coat F domain; Region: Coat_F; pfam07875"
/db_xref="CDD:203788"
gene complement(84171..84443)
/locus_tag="DSY0080"
/db_xref="GeneID:3954213"
CDS complement(84171..84443)
/locus_tag="DSY0080"
/note="similarity to COG0488 ATPase components of ABC
transporters with duplicated ATPase domains"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516313.1"
/db_xref="GI:89892826"
/db_xref="GeneID:3954213"
/translation="MLLGRYNILLMDEPSNFLDLPGIEALEVLMKSYAGTILFISHDQ
RLLENVADRIYAISVKILATDKTKLIKTGRSMGNNTLVKRSLLLWR"
misc_feature complement(84270..>84443)
/locus_tag="DSY0080"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
gene complement(84445..85908)
/locus_tag="DSY0081"
/db_xref="GeneID:3954214"
CDS complement(84445..85908)
/locus_tag="DSY0081"
/note="similarity to COG0488 ATPase components of ABC
transporters with duplicated ATPase domains(Evalue:
2E-70)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516314.1"
/db_xref="GI:89892827"
/db_xref="GeneID:3954214"
/translation="MGFFVVFIFAGKDMENRRGIAISGYPCCCLSFFVDMQIESPSRG
WRSAFFIAISNYELCNKKREEPTMELLLKATDIYVEYKGREILSINELELYNYDRIGL
VGSNGAGKSTLIKVLLGELALPGCIVKGIGNFAYIPQLTEAAWQESIDHALLGKLGVS
RLDTQTMSGGEETRLKVAQALSGQVHGIFADEPTSHLDREGIDFLIGQLQYFSGALLI
ISHDRYFLDKVVNKIWELKDGKITEYWGNYSDYLGQKEEERQRQTAQYEQHVMERARL
ERAAEEKRKQAQKVDQKTKGAAKKGATESGGRLGHQKTIGSKQKTLYKAAKSMEHRIE
SMGDISAPEKARTVRFRQSQALALHNPYPITGTEINKIFDNKVLFEKASFQIPLGAKV
AFTGGNGTGKTTLFQMILHREAGIAISPKAEIGYFAQNSYKFNRDQGVMTFMEDHCDY
GQSEIRSVLASMGFSPNDIKKNLSVLSGGRAHQIIAG"
misc_feature complement(85186..85698)
/locus_tag="DSY0081"
/note="ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism]; Region: CbiO;
COG1122"
/db_xref="CDD:224047"
misc_feature complement(85189..85695)
/locus_tag="DSY0081"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
misc_feature complement(<85102..85209)
/locus_tag="DSY0081"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:221805"
misc_feature complement(<84622..84819)
/locus_tag="DSY0081"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
gene 86162..86368
/locus_tag="DSY0082"
/db_xref="GeneID:3954215"
CDS 86162..86368
/locus_tag="DSY0082"
/note="similarity to COG1476 Predicted transcriptional
regulators"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516315.1"
/db_xref="GI:89892828"
/db_xref="GeneID:3954215"
/translation="MHNKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFDPSLWL
AYDLAKLFKVSIEELFLFIEEDRK"
misc_feature 86168..86338
/locus_tag="DSY0082"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature order(86177..86179,86189..86191,86264..86266)
/locus_tag="DSY0082"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(86186..86188,86261..86263)
/locus_tag="DSY0082"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature order(86207..86212,86243..86245,86252..86254,86264..86269)
/locus_tag="DSY0082"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 86870..88207
/locus_tag="DSY0083"
/db_xref="GeneID:3954216"
CDS 86870..88207
/locus_tag="DSY0083"
/note="similarity to COG1032 Fe-S oxidoreductases family
2(Evalue: 2E-47)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516316.1"
/db_xref="GI:89892829"
/db_xref="GeneID:3954216"
/translation="MKIVLIQPKMNKRPMDTDLKTRMAPPLSLLTLMGLTPEGHEVIM
VNENVEKIDYACGAELVGITITLDVMPRAVEIAEEFHRLGIPVVAGGIHVTSSPDECR
GYFDAICIGAAERIWARMIEDAEEGRLQQVYHDMTDFRGEEIASPAYHRIDKNRYLYT
NIITTSRGCPNRCGFCYNSCRNRMYIRRPVANVLRDIEGLGTRHILFIDDNFIGVPAY
TRELLNHLRGRELKWSAAVTTKIADYPDVLDLMAETGCQSLFIGFESINNSSLHGVNK
DNQFEKYERIVTAIHSRGIMINASMVFGLDGDEPDVFQRTLDWLVKNKIETLTSHILT
PYPGTELHGRMKEEGRILDHELSRYNTAHVVFQPKGMTAEELYKGYLWIYREFYSFPN
IWRRRPEHKAQRKSYFLFNIFYRKFGGFTSALARVIPMRAVGRLAARISYRVK"
misc_feature 86942..88165
/locus_tag="DSY0083"
/note="Fe-S oxidoreductase [Energy production and
conversion]; Region: COG1032"
/db_xref="CDD:223963"
misc_feature 86942..87253
/locus_tag="DSY0083"
/note="B12 binding domain (B12-BD). Most of the members
bind different cobalamid derivates, like B12
(adenosylcobamide) or methylcobalamin or methyl-Co(III)
5-hydroxybenzimidazolylcobamide. This domain is found in
several enzymes, such as glutamate mutase; Region:
B12-binding_like; cl00293"
/db_xref="CDD:241759"
misc_feature order(87053..87061,87065..87073,87143..87145,87215..87217,
87224..87226)
/locus_tag="DSY0083"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:239016"
misc_feature 87356..87910
/locus_tag="DSY0083"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(87374..87376,87380..87382,87386..87388,87392..87400,
87491..87493,87494..87496,87578..87586,87653..87655,
87773..87775,87863..87868)
/locus_tag="DSY0083"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 88300..88704
/locus_tag="DSY0084"
/db_xref="GeneID:3954217"
CDS 88300..88704
/locus_tag="DSY0084"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516317.1"
/db_xref="GI:89892830"
/db_xref="GeneID:3954217"
/translation="MGQYDGNRPAVYRRRSRCFLKSPKRGGGLKVKRLVLSVLLLIIS
FFLSIIALKFEMKIMGPEEGYNVPFPAYLMACLLYLLVFCGIYSALNPLFQNYRDNEK
YVLTGVFSVLLFVVFRFPLSYLGLIWLNPILY"
gene 88924..89379
/locus_tag="DSY0085"
/db_xref="GeneID:3954218"
CDS 88924..89379
/locus_tag="DSY0085"
/note="similarity to COG1846 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516318.1"
/db_xref="GI:89892831"
/db_xref="GeneID:3954218"
/translation="MNERIDKRKSLIKAISAIDRYSQTYIGRNVKDYNIGQGQWAFLT
QLLFNYDGITQEELSELLNIDKANTARALKKLEEEGYVYREEDPKDGRKKIVYVTAKA
RDFEQEFHEVFKGLNRILAKDFTEDERETARRILYKMLDNIADYERRHR"
misc_feature 89011..89310
/locus_tag="DSY0085"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature <89074..89232
/locus_tag="DSY0085"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature order(89083..89085,89092..89094,89230..89232)
/locus_tag="DSY0085"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
misc_feature order(89083..89091,89116..89127,89131..89136,89143..89148,
89152..89157,89173..89178,89188..89190,89203..89211)
/locus_tag="DSY0085"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
gene 89404..89811
/locus_tag="DSY0086"
/db_xref="GeneID:3954219"
CDS 89404..89811
/locus_tag="DSY0086"
/note="similarity to COG1720 Uncharacterized ACR(Evalue:
1E-25)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516319.1"
/db_xref="GI:89892832"
/db_xref="GeneID:3954219"
/translation="MEILMKPIGYIKSPYKEKGEAPRQSTLSGETTAVIEILEEYQEG
IADIQEGEYGVILFYFHKSEGYKLTTLSRRNNQVMGVFSTRSPNRPNGIGLSTVRFVK
REGNRLFFEGVDMLDNTPVLDIKPYIDPAAVAD"
misc_feature 89422..89784
/locus_tag="DSY0086"
/note="Escherichia coli YaeB and related proteins; Region:
UPF0066; cd09281"
/db_xref="CDD:187753"
misc_feature order(89422..89427,89533..89541,89545..89547,89566..89568,
89578..89580,89641..89658,89668..89670,89674..89676,
89680..89682,89767..89784)
/locus_tag="DSY0086"
/note="homodimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:187753"
misc_feature order(89575..89577,89581..89586,89656..89658,89680..89682,
89686..89688,89743..89745,89758..89760)
/locus_tag="DSY0086"
/note="cofactor binding site; other site"
/db_xref="CDD:187753"
gene 90212..91717
/locus_tag="DSY0087"
/db_xref="GeneID:3954220"
CDS 90212..91717
/locus_tag="DSY0087"
/note="similarity to COG0614 ABC-type
cobalamin/Fe3+-siderophores transport systems, periplasmic
components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516320.1"
/db_xref="GI:89892833"
/db_xref="GeneID:3954220"
/translation="MIILLGGCNSSATNQPAENPPAEKAVAAGTYTAKAAGYHGDLEV
TTEVDQEGKITKITIGENTETEDVGGIAMEKIPQRIIEAQSLDVDVIAGATLTSKGII
NGVAAALKEAGADPVHYGYVAPEEESEAIMSPLNKSALPVKKETTGSITIKDVKGREV
TLDLPISSYAISTMDVIDYIIPLKGEEAFAMLVASGQDGGGGIQKYAQLYKPIVGDYT
QHLGQISDHNAPFDLEMVLSMNPDVLIVNSAMAAHKYALEIEEQLTAAGISIVLIDVP
GKTLDKSVQETMKLLGKIFQEEEKAAEVAAFIDKQYELLAAKNLAQRQNKPKVYYEKS
GYSEVYGSTGTSVSGWGLPIAIAGGDNIADAVLLDKASAGGSSNTLDPEYVIKADPDY
IILSGVNDGWLDSLKQKKEPPQYDIINRTGWSNLQAVKNNNVYEFAHSTSRSIYAFYP
CLKMAKLFYPEEFKDLNPEAVLDEFFDQFMLVGSDISTWFTGLEDRISLKK"
misc_feature 90326..90547
/locus_tag="DSY0087"
/note="FMN-binding domain; Region: FMN_bind; pfam04205"
/db_xref="CDD:217964"
misc_feature 90617..91606
/locus_tag="DSY0087"
/note="ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism]; Region: FepB; COG0614"
/db_xref="CDD:223687"
misc_feature 90659..91678
/locus_tag="DSY0087"
/note="Periplasmic binding protein TroA_f. These proteins
are predicted to function as initial receptors in the ABC
metal ion uptake in eubacteria and archaea. They belong
to the TroA superfamily of helical backbone metal receptor
proteins that share a...; Region: TroA_f; cd01139"
/db_xref="CDD:238559"
misc_feature order(90731..90736,90806..90808,90890..90892,90947..90949,
90953..90955,91169..91171,91277..91279)
/locus_tag="DSY0087"
/note="putative ligand binding residues [chemical
binding]; other site"
/db_xref="CDD:238559"
gene 91876..92895
/locus_tag="DSY0088"
/db_xref="GeneID:3954221"
CDS 91876..92895
/locus_tag="DSY0088"
/note="similarity to COG0609 ABC-type
cobalamin/Fe3+-siderophores transport systems, permease
components(Evalue: 3E-66)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516321.1"
/db_xref="GI:89892834"
/db_xref="GeneID:3954221"
/translation="MLIRRRIFLIIGLSVGMAALVILNISIGSSSIAIHDILRVLFTG
EGDGHNSMIIKDIRLPMALMAVVVGASLGISGCELQTILRNPIASPYTLGISAAASFG
AAMGLILNANVLKSLKVPETLAVTVNAFIFALMVAVAIYIFSRQRQINKTAIILFGVA
LNFLFNSLTMVLQYIADENQLQSLIFWNFGSLLKTTWSKFFIVALVLVICFLVLFKNA
WKLTAMTLDDTKARSIGVDTAKVRRMVIFVSSLLAAVSVCFVGTIGFVGLIAPHIARQ
LVGEDQRFFMPLSGLLGAFVMCLAFVISKLIIRGVILPIGLVTSIIGIPFFIAIIFSK
KMRSM"
misc_feature 91927..>92835
/locus_tag="DSY0088"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:236720"
misc_feature 92062..92835
/locus_tag="DSY0088"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(92113..92115,92125..92133,92518..92523,92527..92535,
92539..92544,92548..92565,92569..92577,92698..92700,
92719..92721)
/locus_tag="DSY0088"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(92128..92130,92134..92136,92149..92151,92332..92334,
92338..92343,92350..92355,92362..92367,92374..92376,
92383..92388,92392..92394,92428..92433,92440..92442,
92668..92670,92824..92826,92833..92835)
/locus_tag="DSY0088"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(92392..92394,92470..92472,92644..92646,92656..92658,
92788..92790,92815..92817)
/locus_tag="DSY0088"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 92892..93689
/locus_tag="DSY0089"
/db_xref="GeneID:3954222"
CDS 92892..93689
/locus_tag="DSY0089"
/note="similarity to COG1120 ABC-type
cobalamin/Fe3+-siderophores transport systems, ATPase
components(Evalue: 1E-40)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516322.1"
/db_xref="GI:89892835"
/db_xref="GeneID:3954222"
/translation="MMLKVNNLNFSYKGYKKSKGSHKVFSGFSLEFAKGFNVILGPNG
AGKSTLIKAIFGLLDYEGEIFYGQESLTAMCTEDKIKLMSYLPQMDVDLSTLTVLEMV
ILGRLPELSHKVSDEDLDIVMDTLRSLNIEHLAPRNFSELSGGQKKLVFIAQTLVRNP
KVLLLDEPVNSLDLQKQLELCQLLQRVVAEQNVDLIVVLHDINLAARYAQHIVVVDGK
GSLYSAGEPREVITAAMLQEVYGVIANITYDEQGVPIIAPVCSVRGI"
misc_feature 92892..93665
/locus_tag="DSY0089"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:224045"
misc_feature 92901..93566
/locus_tag="DSY0089"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature 93012..93035
/locus_tag="DSY0089"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature order(93021..93026,93030..93038,93153..93155,93387..93392,
93489..93491)
/locus_tag="DSY0089"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature 93144..93155
/locus_tag="DSY0089"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature 93315..93344
/locus_tag="DSY0089"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature 93375..93392
/locus_tag="DSY0089"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature 93399..93410
/locus_tag="DSY0089"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature 93477..93497
/locus_tag="DSY0089"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene complement(93745..94560)
/locus_tag="DSY0090"
/db_xref="GeneID:3954223"
CDS complement(93745..94560)
/locus_tag="DSY0090"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516323.1"
/db_xref="GI:89892836"
/db_xref="GeneID:3954223"
/translation="MEFKRVTLDNLASEHICCALTDQKGESSVASKKAWLSQRLGEGL
VFDKLDVRGKVFIEYIPAEKAWCPITADHYLFINCFWVSGQYKGQGYANLLLERCLAD
AKAKGKQGLVVLSAEKKMPFLSDPKYLKYKGFQIADQAPPYYELLYLPFSPQANVPQF
KACVKSGRTDEEGWVVYYTNQCPHTDKYVPILVDHLKSKKLAIKAIKIETTEQAQKAP
NPFTTYALFYNGQFITNEILTAKSFDKLLIKTNLYPPTVPPSPSEYPAPLQRG"
misc_feature complement(94126..>94413)
/locus_tag="DSY0090"
/note="Acetyltransferases [General function prediction
only]; Region: RimI; COG0456"
/db_xref="CDD:223532"
misc_feature complement(94222..>94347)
/locus_tag="DSY0090"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(94282..94287,94315..94323))
/locus_tag="DSY0090"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
misc_feature complement(93826..93936)
/locus_tag="DSY0090"
/note="YoaP-like; Region: YoaP; pfam14268"
/db_xref="CDD:206436"
gene complement(94733..95236)
/locus_tag="DSY0091"
/db_xref="GeneID:3954224"
CDS complement(94733..95236)
/locus_tag="DSY0091"
/note="similarity to COG1321 Mn-dependent transcriptional
regulator(Evalue: 2E-21)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516324.1"
/db_xref="GI:89892837"
/db_xref="GeneID:3954224"
/translation="MDNKSGSEYRTVRGYQIANYQENKLTPAMEDYMEMACRLCLENG
YTRINKLAELLNVRPSSASKMIAKLSELGYLQYDLYESILLTEKGKETGTYLLSRHDT
VEQFLRLIGNMNPLEETELIEHSLNVSTVLQLHTLLDFFAQNVAVQESFETFKKAAKE
NPASPSL"
misc_feature complement(94757..95164)
/locus_tag="DSY0091"
/note="manganese transport transcriptional regulator;
Provisional; Region: PRK03902"
/db_xref="CDD:179669"
misc_feature complement(94997..95161)
/locus_tag="DSY0091"
/note="Iron dependent repressor, N-terminal DNA binding
domain; Region: Fe_dep_repress; pfam01325"
/db_xref="CDD:110335"
misc_feature complement(94814..94981)
/locus_tag="DSY0091"
/note="Iron dependent repressor, metal binding and
dimerisation domain; Region: Fe_dep_repr_C; pfam02742"
/db_xref="CDD:202369"
gene 95381..96322
/locus_tag="DSY0092"
/db_xref="GeneID:3954225"
CDS 95381..96322
/locus_tag="DSY0092"
/note="similarity to COG0803 ABC-type Mn/Zn transport
system, periplasmic Mn/Zn-binding (lipo)protein (surface
adhesin A)(Evalue: 2E-73)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516325.1"
/db_xref="GI:89892838"
/db_xref="GeneID:3954225"
/translation="MSRKLKRMLGIVLSLILLTAGCSQTAGKKESGEGSLNVVATTTM
LADLAGVIGGEHVSVNGLMGPGIDPHLYQASAGDVERMQKADVVVYNGLHLEGKMSEL
FENLSAQGIFTICIEKSMDRSRLLISEDDGGVYDPHIWFDVTLWKQAAQGVAEGFAQA
DPEHGNSYIANLERYLAELDELNAYIQKRAAQLPKGQRVLITAHDAFQYFGNAYGFEV
RGLQGISTDSEAGTSDVSALASFIVERRIKAIFVESSVPPKTIQALQAAVKAQGFDVA
IGGELYSDSLGGEGSGDETYIKTFRSNIDTIVDALKA"
misc_feature 95390..96316
/locus_tag="DSY0092"
/note="ABC-type metal ion transport system, periplasmic
component/surface adhesin [Inorganic ion transport and
metabolism]; Region: LraI; COG0803"
/db_xref="CDD:223874"
misc_feature 95486..96316
/locus_tag="DSY0092"
/note="Metal binding protein TroA. These proteins have
been shown to function as initial receptors in ABC
transport of Zn2+ and possibly Fe3+ in many eubacterial
species. The TroA proteins belong to the TroA superfamily
of periplasmic metal binding proteins...; Region: TroA;
cd01016"
/db_xref="CDD:238498"
misc_feature order(95588..95590,95792..95794,95990..95992,96230..96232)
/locus_tag="DSY0092"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238498"
misc_feature order(95678..95683,95690..95692,95732..95734,95780..95782,
95843..95845,95855..95860)
/locus_tag="DSY0092"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:238498"
gene 96338..97093
/locus_tag="DSY0093"
/db_xref="GeneID:3954226"
CDS 96338..97093
/locus_tag="DSY0093"
/note="similarity to COG1121 ABC-type Mn/Zn transport
systems, ATPase component(Evalue: 4E-79)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516326.1"
/db_xref="GI:89892839"
/db_xref="GeneID:3954226"
/translation="MDMKGMEHAVEVETLTVAYDAKPVLWDVNLKVPKGTLMAVVGPN
GAGKTTLIKAMLGLLTPVTGAICFSGGKGDGHALKNRIGYVPQSGSVDWDFPATVQDV
VLMGCYGKLGWFRRPRKADYELTAQMLKKVGMEQYASRQISQLSGGQQQRVFLARALA
QEAEIYFMDEPFKGVDAQTEKAIVLLLKELKEQGKTVMVVHHDLQTVADYFDWVTLIN
LRVIASGPVEEVFHEENLKMAYRSTGALLRSVV"
misc_feature 96353..97081
/locus_tag="DSY0093"
/note="ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism]; Region: ZnuC;
COG1121"
/db_xref="CDD:224046"
misc_feature 96368..97012
/locus_tag="DSY0093"
/note="ATP-binding cassette domain of the metal-type
transporters; Region: ABC_Metallic_Cations; cd03235"
/db_xref="CDD:213202"
gene 97095..98018
/locus_tag="DSY0094"
/db_xref="GeneID:3954227"
CDS 97095..98018
/locus_tag="DSY0094"
/note="similarity to COG1108 ABC-type Mn2+/Zn2+ transport
systems, permease components(Evalue: 2E-84)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516327.1"
/db_xref="GI:89892840"
/db_xref="GeneID:3954227"
/translation="MNTWLALLNDYTFQTVSLGSALLGMISGVLGSFAVLRKQSLLGD
GVSHSALPGVVIAFILLGSKNTEILLLGALLSGLTATALILGIVRHTRIKFDSALALV
MSFFFGLGMVLLTYVQKIPNSNQAGLKRFIFGQASTLLQRDIILMSVCGVVLLTLVLV
FWKEFKLFVFDSDFAHNLGFSPKKLNLLLSFMIVLTIIIGLQTVGVILMSALLISPAV
AARQWTNKLGVMVLLAAAFGALSGVVGTAASSAVPKLPTGPAIVVCASLLVVLSVLFA
PGRGILHRVYRHRKNKLMLKLEGSGPDVPTI"
misc_feature 97107..97940
/locus_tag="DSY0094"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:224033"
misc_feature 97146..97877
/locus_tag="DSY0094"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(97185..97187,97197..97205,97569..97574,97578..97586,
97590..97595,97599..97616,97620..97628,97752..97754,
97773..97775)
/locus_tag="DSY0094"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(97200..97202,97206..97208,97221..97223,97377..97379,
97383..97388,97395..97400,97407..97412,97419..97421,
97428..97433,97437..97439,97479..97484,97491..97493,
97719..97721,97869..97871)
/locus_tag="DSY0094"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(97437..97439,97521..97523,97695..97697,97707..97709,
97842..97844,97860..97862)
/locus_tag="DSY0094"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 98002..99105
/locus_tag="DSY0095"
/db_xref="GeneID:3954228"
CDS 98002..99105
/locus_tag="DSY0095"
/note="similarity to COG1108 ABC-type Mn2+/Zn2+ transport
systems, permease components(Evalue: 3E-76)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516328.1"
/db_xref="GI:89892841"
/db_xref="GeneID:3954228"
/translation="MSPQFEIQLIAVIVAVACALPGVFLVLRKMAMMSDSITHTILLG
IVLAFFVTHDLSSSFLIAGAALMGVVTVWLTEILGRTRLLAEDAAIGIVFPLLFSIAI
ILITRYAGSVHLDTDSVLLGELAFAPFDRMIVERVDLGAKAIHTTGILLLINLAVIII
FFKELKLATFDPMLASVLGFAPTLVHYGLMTLVSLTTVGAFQAVGSILVVAFMIGPPV
TAYLLTDDLKRMLILSGAIGAINGLLGYLAAALLDVSIAGCMAMMTGISFLLVFIFAP
GRGLVSTLSRRRNQKIGFAKMILLLHLYHHEESEANLAEIQNYLRLDGELTKNLIALL
QKEGCIELNNSVIKLTEQGRLTSLRSYETLLSG"
misc_feature 98053..98841
/locus_tag="DSY0095"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:224033"
misc_feature 98053..98691
/locus_tag="DSY0095"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(98065..98067,98077..98085,98476..98481,98485..98493,
98497..98502,98506..98523,98527..98535,98659..98661,
98680..98682)
/locus_tag="DSY0095"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(98080..98082,98086..98088,98101..98103,98257..98259,
98263..98268,98275..98280,98287..98292,98299..98301,
98308..98313,98317..98319,98350..98355,98362..98364,
98626..98628)
/locus_tag="DSY0095"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(98317..98319,98392..98394,98602..98604,98614..98616)
/locus_tag="DSY0095"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 99386..101008
/locus_tag="DSY0096"
/db_xref="GeneID:3954229"
CDS 99386..101008
/locus_tag="DSY0096"
/note="similarity to COG0747 ABC-type
dipeptide/oligopeptide/nickel transport systems,
periplasmic components(Evalue: 1E-136)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516329.1"
/db_xref="GI:89892842"
/db_xref="GeneID:3954229"
/translation="MLRKRFAPLLILLVVVLLVGLPGCSPSPTTSKAPEEGKKEELVL
AVGMADYGMFDPKKTWGAIGQIRLTHSSLLKATKDLTFVGDLAKSFETSKDGYTWTFK
IRNDAKFSNGDPVTIEDVLFTYEMLKEDGIAFDLSFVDKMEISGKDTIVFTLQEPRST
FVSQLSEIGIVPKHIYDDNYSKNPIGSGPYQVTQYNDGEQIIMDYNPYWYGEEPQFKK
LTFLLLGEDAAFAAAKAGQVDICYIPPKFAGQTLPGMTLHVLESVDSRGISLPVLPSG
GTGYINANEVKVGNDITSHLAIRQALNIGLSRQGIIDVTMDGYGKAAYSIVDGTPWFN
EKTVIEDGRVEEAKQLLADAGWADTNKDGIVEKDGLKAEFDLYFPSSDQLRGDIALAV
ADQALGLGIKINIIGATWDEIFIQGKANACLWGGGRLHPHQLYTMYSSQVINTGYNNM
PSYINPTSDDYIKKALYASTQEEANQYWKLAQWDGKTGFSPLGDAPIVWLARVDHLYL
VNDQVNIGNQLMHSHGYEFGLFGNITEWSINP"
misc_feature 99503..100933
/locus_tag="DSY0096"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_19; cd08518"
/db_xref="CDD:173883"
misc_feature 99626..100708
/locus_tag="DSY0096"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:215949"
gene 101128..102105
/locus_tag="DSY0097"
/db_xref="GeneID:3954230"
CDS 101128..102105
/locus_tag="DSY0097"
/note="similarity to COG0601 ABC-type
dipeptide/oligopeptide/nickel transport systems, permease
components(Evalue: 1E-107)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516330.1"
/db_xref="GI:89892843"
/db_xref="GeneID:3954230"
/translation="MSQKILRRFLRMITLMLGLSILTFWLIHLSPIDPVNAYAISDTS
MSQEQLEKLKEYWGVNKSPVEQYFSWAGALLQGDFGMSKLYRVPVMDIIKSRAMTSFA
LMGTAWLLSGVFGYLLGAVAAMRRGKLLDRFIKWYSYILVSIPTFLLALILLLVFAVW
LGMFPIGLTKPIGLADADVTLADRLRHFILPALTLSLLGVANIAMHTREKMIDILNTE
YVTFARARGETAWQIFKNHGFRNSIIPAISIQFAYFSELFGGSVLAEQVFAYPGLGST
LTTAGLKGDLPLLLGIILIASLFVFIGNFIADILNTIVDPRIKRGELRC"
misc_feature 101128..102093
/locus_tag="DSY0097"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:223674"
misc_feature 101416..101949
/locus_tag="DSY0097"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(101464..101469,101476..101481,101494..101496,
101527..101538,101542..101565,101617..101622,
101629..101631,101638..101640,101644..101646,
101719..101724,101728..101730,101734..101736,
101743..101748,101752..101754,101764..101769,
101776..101778,101827..101829,101869..101874,
101881..101883,101902..101913,101920..101925)
/locus_tag="DSY0097"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(101545..101565,101617..101631,101638..101646,
101902..101919)
/locus_tag="DSY0097"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(101644..101646,101704..101706,101920..101922)
/locus_tag="DSY0097"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(101779..101817,101833..101838,101848..101850)
/locus_tag="DSY0097"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 102099..102968
/locus_tag="DSY0098"
/db_xref="GeneID:3954231"
CDS 102099..102968
/locus_tag="DSY0098"
/note="similarity to COG1173 ABC-type
dipeptide/oligopeptide/nickel transport systems, permease
components(Evalue: 8E-83)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516331.1"
/db_xref="GI:89892844"
/db_xref="GeneID:3954231"
/translation="MLEQLGRKEEVLLDPGKTGNVRKKIIWMIGFSTCLIGLILILSF
ILSNDNLRVNNASKNLMPSLQHLFGTDWLGRDMFTRTMKGLRLSLAVGIFATVISVTV
ATLLGTAAALFGKKVDELISWLIDLFIGMPHLIFMILICYIVGGGIRGIVIGVAMTHW
TSLARVVRAEVLQIKSAEYIQLSRSYGKSPWYIARRHVMPSVFPQIMIGAFLMFPHVI
LHEAALTFLGFGLSPQTPAVGIILSEAMSHLSTGQWWLILFPGILLILVAKSFDNIGE
QLRILLDPTSSNE"
misc_feature 102240..102947
/locus_tag="DSY0098"
/note="nickel ABC transporter, permease subunit NikC;
Region: nickel_nikC; TIGR02790"
/db_xref="CDD:131837"
misc_feature 102351..102902
/locus_tag="DSY0098"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(102399..102404,102411..102416,102429..102431,
102459..102470,102474..102503,102510..102515,
102570..102575,102579..102581,102585..102587,
102594..102599,102603..102605,102615..102620,
102627..102629,102678..102680,102720..102725,
102732..102734,102753..102764,102771..102776,
102816..102821,102858..102863,102870..102875,
102879..102884,102891..102896)
/locus_tag="DSY0098"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(102477..102518,102753..102770)
/locus_tag="DSY0098"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(102555..102557,102771..102773,102810..102812,
102819..102821,102858..102860)
/locus_tag="DSY0098"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(102630..102668,102684..102689,102699..102701)
/locus_tag="DSY0098"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 103005..103793
/locus_tag="DSY0099"
/db_xref="GeneID:3957060"
CDS 103005..103793
/locus_tag="DSY0099"
/note="similarity to COG0444 ABC-type
dipeptide/oligopeptide/nickel transport system, ATPase
component(Evalue: 5E-79)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516332.1"
/db_xref="GI:89892845"
/db_xref="GeneID:3957060"
/translation="MKVENLSIGFSQYFRGTQKRVIQPIANLHVEIEEGEIVAVVGAS
GSGKSLLAHAILGILPTNAICSGSMMYRGEELTKKRKEELRGREISFIPQSVNYLDPL
MPVGKQVQIGLAKQRAQERQNRLFAHYGLKESDGRLYPHELSGGMLRRVLFATSVREG
VKLVIADEPTPGIHPQALAEILKQLQQFAREGAGVMLITHDIMSALAIADRVAVIKDG
QTIELSPVSAFSGTGEQLQTDYARELWRALPQNDFACQELRWEA"
misc_feature 103008..103751
/locus_tag="DSY0099"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:224049"
misc_feature 103008..103670
/locus_tag="DSY0099"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 103128..103151
/locus_tag="DSY0099"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(103137..103142,103146..103154,103284..103286,
103503..103508,103602..103604)
/locus_tag="DSY0099"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 103275..103286
/locus_tag="DSY0099"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 103431..103460
/locus_tag="DSY0099"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 103491..103508
/locus_tag="DSY0099"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 103515..103526
/locus_tag="DSY0099"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 103590..103610
/locus_tag="DSY0099"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 103781..104401
/locus_tag="DSY0100"
/db_xref="GeneID:3957061"
CDS 103781..104401
/locus_tag="DSY0100"
/note="similarity to COG1124 ABC-type
dipeptide/oligopeptide/nickel transport system, ATPase
component(Evalue: 8E-67)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516333.1"
/db_xref="GI:89892846"
/db_xref="GeneID:3957061"
/translation="MGSIMALLGENLGVYYKKDQWIFKNMNIKVLPGQVLGLSGYSGC
GKTTLARVLAGYILPQTGRVSVDSKPLAPKSFRPVQLIYQHPEKAINPRWKMEDVLTE
TYTPSQDILDAFGIREDWRKRWPIELSGGELQRFCIVRALNPQTRYIIADEMTTMLDA
ITQARIWHSFLHICQSRKIGVIVVSHELSLLNRLCDKVIQVGNTWE"
misc_feature 103790..104389
/locus_tag="DSY0100"
/note="ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism]; Region: CbiO;
COG1122"
/db_xref="CDD:224047"
misc_feature 103808..104377
/locus_tag="DSY0100"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 103898..103921
/locus_tag="DSY0100"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(103907..103912,103916..103924,104030..104032,
104234..104239,104336..104338)
/locus_tag="DSY0100"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 104021..104032
/locus_tag="DSY0100"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 104162..104191
/locus_tag="DSY0100"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 104222..104239
/locus_tag="DSY0100"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 104246..104257
/locus_tag="DSY0100"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 104324..104344
/locus_tag="DSY0100"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
gene complement(104452..105762)
/locus_tag="DSY0101"
/db_xref="GeneID:3957062"
CDS complement(104452..105762)
/locus_tag="DSY0101"
/note="similarity to COG0642 Signal transduction histidine
kinase(Evalue: 4E-58)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516334.1"
/db_xref="GI:89892847"
/db_xref="GeneID:3957062"
/translation="MNKAKREYKLSQTLMITAVLACLASALLFLGLQYLSRGIIYDYC
KKPEVISAHIEKKITSLRQYIKDNQISLSDLSELDNWMRGKELTEIVIYHDNTLIYSS
HTLSPSFSFPSQPKFPDFYLWHNKYILTFQEGTAEVFIKDFFEHRYIDYITYFNLLVF
FLCFITIMVFFIHKKVSYINTLEKEIRILEGGDLHYSITIKGNDELASLAQEIDEMRK
AFIAREDYAERVRAATNTLMAGVSHDLRTPLTALIGYLEVLEGEDIPAKESSFLGKCK
NRALQIKDLINHLFDYFFISTNDYKEIDLKHYPAQEVLREMIHEHIYLMEQSGFMVSS
TVDLPEGRIKVDAGMIQRIFDNMLSNVQKYADPAHPVRLYSTIDSGELVLVFENHSRH
SLEPTPKAGLGLNNCQKIMLLHQGRFMYRQNDHVFTIQLAFPLI"
misc_feature complement(104470..105336)
/locus_tag="DSY0101"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature complement(105106..105228)
/locus_tag="DSY0101"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(105106..105108,105115..105120,
105124..105129,105136..105141,105145..105150,
105196..105198,105202..105207,105214..105219,
105223..105228))
/locus_tag="DSY0101"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(104887..105069)
/locus_tag="DSY0101"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(104896..104898,104908..104910,
104917..104919,104929..104931,104938..104940,
104950..104952,104998..105000,105007..105009,
105019..105021,105028..105030,105040..105042,
105052..105054))
/locus_tag="DSY0101"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(105034..105036)
/locus_tag="DSY0101"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(104458..104727)
/locus_tag="DSY0101"
/note="Histidine kinase-, DNA gyrase B-, and HSP90-like
ATPase; Region: HATPase_c; pfam02518"
/db_xref="CDD:217081"
misc_feature complement(order(104482..104484,104497..104499,
104503..104505,104551..104562,104674..104676,
104683..104685,104695..104697))
/locus_tag="DSY0101"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(104683..104685)
/locus_tag="DSY0101"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(order(104554..104556,104560..104562))
/locus_tag="DSY0101"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene complement(105755..106525)
/locus_tag="DSY0102"
/db_xref="GeneID:3957063"
CDS complement(105755..106525)
/locus_tag="DSY0102"
/note="similarity to COG0745 Response regulators
consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain(Evalue: 6E-55)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516335.1"
/db_xref="GI:89892848"
/db_xref="GeneID:3957063"
/translation="MSSPEFSQRIFHAIVRNIACRGGVNMPENSTILVVDDDPEIREI
IHILLQREGFAVQVAADADTALATLTPGVDLAILDIMMPGKSGFELCSEIRKTTTIPI
LFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKALLRRYLIYQKQEPASKKEV
RLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVFSAKEIYEHIWQEPFLP
LSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYIE"
misc_feature complement(105758..106432)
/locus_tag="DSY0102"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature complement(106097..106429)
/locus_tag="DSY0102"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(106139..106144,106151..106153,
106208..106210,106265..106267,106289..106291,
106415..106420))
/locus_tag="DSY0102"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(106289..106291)
/locus_tag="DSY0102"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(106265..106273,106277..106282))
/locus_tag="DSY0102"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(106136..106144)
/locus_tag="DSY0102"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature complement(105767..106048)
/locus_tag="DSY0102"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature complement(order(105770..105772,105785..105787,
105821..105826,105848..105850,105857..105859,
105914..105919,105974..105976))
/locus_tag="DSY0102"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene 106631..107629
/locus_tag="DSY0103"
/db_xref="GeneID:3957064"
CDS 106631..107629
/locus_tag="DSY0103"
/note="similarity to COG0803 ABC-type Mn/Zn transport
system, periplasmic Mn/Zn-binding (lipo)protein (surface
adhesin A)(Evalue: 2E-74)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516336.1"
/db_xref="GI:89892849"
/db_xref="GeneID:3957064"
/translation="MKKLWSKILVGGLVLFLMAGCSQTQNSSSPNTNDKQTQSEKLSV
YTSFYPMYDFAAKIGGDKITPVNMVPAGMEPHDWEPSAADITGLEKADVFVYNGAGME
HWVEDVLESLQNKALIAVEASKDITLREGHHKHDHEDEHEDEGKEHEEEEEHGHEGAE
YDPHTWLSPLNAKKQMETIKDAFVQADPDNKDYYEANYVKYAADLDGLDKEFKDTLAP
LPKKDIIVSHEAFGYLCGAYGLNQIGIEGLAPDSEPDPARMAEVIEFAKEHEVKVIFF
EELVSPKVAETIAKATGAKTAVLSPIEGLSDEQQAAGDDYLAVMRQNLEALKAALQ"
misc_feature 106745..107626
/locus_tag="DSY0103"
/note="Metal binding protein AcdA. These proteins have
been shown to function in the ABC uptake of Zn2+ and Mn2+
and in competence for genetic transformation and adhesion.
The AcdA proteins belong to the TroA superfamily of
helical backbone metal receptor...; Region: AdcA; cd01017"
/db_xref="CDD:238499"
misc_feature 106760..107623
/locus_tag="DSY0103"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:216419"
misc_feature order(106856..106858,107120..107122,107312..107314,
107537..107539)
/locus_tag="DSY0103"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238499"
gene 107634..108383
/locus_tag="DSY0104"
/db_xref="GeneID:3957065"
CDS 107634..108383
/locus_tag="DSY0104"
/note="similarity to COG1121 ABC-type Mn/Zn transport
systems, ATPase component(Evalue: 1E-55)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516337.1"
/db_xref="GI:89892850"
/db_xref="GeneID:3957065"
/translation="MCMSNIIEVDDLGFSYGNEPVFSKIGFSVYKGDFAAIIGANGAG
KSTLLRLILGELVPNAGSVRLFGQDSRRFRNWPKIGYVPQAGQHSNANFPATAEEIVR
ANLFSQIGLLRFPGKEHRDKVQRALELVGMEGYAKRMIGELSGGQQQRIMLARVLAGD
PEIMILDEPTTGVDAQTVQSLYELLARLNQENGLTIVMVTHDISRAAKYVSRILCLEE
GSLVEHKHKHPGQELAKEGKGNDECDCHSGI"
misc_feature 107643..108299
/locus_tag="DSY0104"
/note="ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism]; Region: CbiO;
COG1122"
/db_xref="CDD:224047"
misc_feature 107655..108281
/locus_tag="DSY0104"
/note="ATP-binding cassette domain of the metal-type
transporters; Region: ABC_Metallic_Cations; cd03235"
/db_xref="CDD:213202"
gene 108355..109188
/locus_tag="DSY0105"
/db_xref="GeneID:3957066"
CDS 108355..109188
/locus_tag="DSY0105"
/note="similarity to COG1108 ABC-type Mn2+/Zn2+ transport
systems, permease components(Evalue: 1E-48)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516338.1"
/db_xref="GI:89892851"
/db_xref="GeneID:3957066"
/translation="MSVIAILEYDFMRRAFIVGILLAVIIPCIGIIVVLKRLSMIGDA
LSHTSLAGVAAGLIMGINPILGAVTACIAAALGIEFIRKKIPKFSEMSIAIVMSAGIG
LAGVLSGHVKNAANFNSFLFGSIVSISDFEMILVAGISCIVMLAFILLYKELFYIALD
ERAARLSGVPVGVINFIFTILTAVTVSVAARTVGALIVSSMMVVPVACAMQVGKSYRQ
TVIYGIIFAVVFTVTGLFLSYYLKLKPGGTIVLLGVLCLVVMLLIKQINSMLRRTVFK
M"
misc_feature 108364..109101
/locus_tag="DSY0105"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:224033"
misc_feature 108388..109077
/locus_tag="DSY0105"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(108442..108444,108454..108462,108796..108801,
108805..108813,108817..108822,108826..108843,
108847..108855,108979..108981,109000..109002)
/locus_tag="DSY0105"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(108457..108459,108463..108465,108478..108480,
108637..108642,108649..108654,108661..108663,
108670..108675,108679..108681,108706..108711,
108718..108720,108946..108948)
/locus_tag="DSY0105"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(108679..108681,108748..108750,108922..108924,
108934..108936,109069..109071)
/locus_tag="DSY0105"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 109217..109648
/locus_tag="DSY0106"
/db_xref="GeneID:3957067"
CDS 109217..109648
/locus_tag="DSY0106"
/note="similarity to COG0735 Fe2+/Zn2+ uptake regulation
proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516339.1"
/db_xref="GI:89892852"
/db_xref="GeneID:3957067"
/translation="MKEVTIVKEVNNNWPAGIKRTKPRESVLSVLEHAPKPLSAAEIC
SEIEKEGESPWLSTIYRILELFVKKGVVVKLAVLNNEMALYELNRFQHKHYAICLGCH
KIVTMNNCPMEKFIPKIEDDDFRVLGHNLEVYGYCRECSVK"
misc_feature 109280..109627
/locus_tag="DSY0106"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature order(109325..109327,109472..109474,109493..109495,
109499..109501,109532..109534)
/locus_tag="DSY0106"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(109379..109408,109412..109426)
/locus_tag="DSY0106"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature order(109490..109492,109496..109498,109553..109555,
109601..109603)
/locus_tag="DSY0106"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(109505..109513,109559..109564,109586..109594,
109598..109624)
/locus_tag="DSY0106"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature order(109508..109510,109517..109519,109625..109627)
/locus_tag="DSY0106"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 109735..110772
/locus_tag="DSY0107"
/db_xref="GeneID:3957068"
CDS 109735..110772
/locus_tag="DSY0107"
/note="similarity to COG0523 GTPases (G3E family)(Evalue:
2E-34)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516340.1"
/db_xref="GI:89892853"
/db_xref="GeneID:3957068"
/translation="MGTEIYIISGFLGVGKTTLIQKMLKEAFQGEKVVLIENDFGEIS
VDAALLKSGGVEVKEISAGCICCSLSGDFVKALKDLLLRFHPDKIIIEPSGVGKLSDV
MKACSDPRIVLHAKVKGKITVVDVKRCQMHLDNFGEFFEDQIRNADVVVFSRSESFPA
KLGDGEKIVKKLNPQGRVLTKPWAQINTAELLNPQRQQHRLPGRCRHGHDEHNHDHRD
HHSHDHNHHDHDHDHAHHSHDHAADCSHQEGCEHNSRAEDVFDTVTIRTKRVFDTEEL
KAKVVKMEDSAKGTILRAKGIVRGPKGYLNLQYLPGDIRITGCHARGDMLCIIGRNLN
RQELCAIFSGE"
misc_feature 109747..110748
/locus_tag="DSY0107"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:223597"
misc_feature 109747..110271
/locus_tag="DSY0107"
/note="CobW/HypB/UreG, nucleotide-binding domain; Region:
cobW; pfam02492"
/db_xref="CDD:217066"
misc_feature 110512..110760
/locus_tag="DSY0107"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; smart00833"
/db_xref="CDD:214844"
gene 111407..112351
/locus_tag="DSY0108"
/db_xref="GeneID:3957069"
CDS 111407..112351
/locus_tag="DSY0108"
/note="similarity to COG0701 Predicted permeases(Evalue:
1E-49)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516341.1"
/db_xref="GI:89892854"
/db_xref="GeneID:3957069"
/translation="MAKPVLEGAQIPVNTIVNVFLGIILQAVPFLLIGVLLSSAIQVF
IPQSFIERRFPKSIGMGMLVAILGGFCLPVCDCASIPVFRSLVRRGIPLPVAVTFMTA
TPVINPVVIVSTYYAFSGNTGIVVGRIFFGIVAAVLIGLTMGFWPPKGSVLAGGAFDR
LLCSCGCYDDVESITTFKGKAGLFIRHSQAEFFGVGKYLVMGSFIAALFQVMGTGLFT
KAQDGAGLAVSILIMMVMAFVLSLCSSSDAIIARSLANQFPMGAIMGFLVFGPMMDIK
NVLMLSSGFSKAFIVRLLLTSLSICFVLVFLFFNWGGM"
misc_feature 111443..112339
/locus_tag="DSY0108"
/note="Predicted permeases [General function prediction
only]; Region: COG0701"
/db_xref="CDD:223773"
gene 112311..113216
/locus_tag="DSY0109"
/db_xref="GeneID:3957070"
CDS 112311..113216
/locus_tag="DSY0109"
/note="similarity to COG3689 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516342.1"
/db_xref="GI:89892855"
/db_xref="GeneID:3957070"
/translation="MFWSFCFLIGEGCNMPAKAFNPQIFLEFLCYCVFGGLIFYLVSS
EKYLTYVTPRLKPYLYFTSIVMGVWALTALGRLFRPQHKLRSAHCFVLVIPIVLLLLP
HAPVSASNLSGNYIGGSAFSNRSGQSALSMQNDLSITIEDASSPEDKVQAEIIQEPLA
GLPAGAYVSELPGLDMGNKRITVAHEDFSMWLTEMYTNIEKYQGYTVVMTGFVFNDPE
FLKEDEFVPARLMMSCCVGDLAPAGILCKYDQADQLQAESWVTVEGTLTLGQHEYDGV
LSDEPQIRVTKITPAEAVEGYIYPY"
misc_feature 112440..113195
/locus_tag="DSY0109"
/note="TIGR03943 family protein; Region: TIGR03943"
/db_xref="CDD:234408"
gene 113324..113494
/locus_tag="DSY0110"
/db_xref="GeneID:3957071"
CDS 113324..113494
/locus_tag="DSY0110"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516343.1"
/db_xref="GI:89892856"
/db_xref="GeneID:3957071"
/translation="MEKRLLKKIEVLRKKLYRYATTRSLVDARVVELSQELDYLLNQY
QRLNKYTQLSFW"
misc_feature 113333..113467
/locus_tag="DSY0110"
/note="Spo0E like sporulation regulatory protein; Region:
SpoOE-like; pfam09388"
/db_xref="CDD:204226"
gene 113585..113674
/locus_tag="DSY_tRNA4-Ser"
/db_xref="GeneID:3958048"
tRNA 113585..113674
/locus_tag="DSY_tRNA4-Ser"
/product="tRNA-Ser"
/db_xref="GeneID:3958048"
gene 114134..115807
/locus_tag="DSY0111"
/db_xref="GeneID:3957072"
CDS 114134..115807
/locus_tag="DSY0111"
/note="similarity to COG2812 DNA polymerase III, gamma/tau
subunits(Evalue: 1E-107)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516344.1"
/db_xref="GI:89892857"
/db_xref="GeneID:3957072"
/translation="MAYLALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFS
GPRGTGKTTTAKVLAKALNCEHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGID
EIRDLRDKVRLSAGESKYKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVH
KIPLTILSRVQRFEFHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDAL
SILDQCLLLDGKLGVEQVYQVLGMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMD
PRQIIRELLDYMRQALLYASTQAFPQVAPHLREHLAYQCQMLGLKTLLQWIGILLQGE
SQLKYAANARLAAELLLVQVIYNSQPGYSKESPQVLERLQELEEEIKNLSSGKSRQES
KAEPVKKVKESREGGSEPPGHKKPELPSLQDKPVISQGGETSALSIEQVQGRWGDILE
QVRKRKKSTHAFLMEGKPVELDGDSLVIVFKEGLSFHRDKVNQKENRETIEEVLQSSL
GKAYRLQSLLENEYGKDPKDSEQVEKAKENPMIKKAADLFGADLLIVEE"
misc_feature 114134..115804
/locus_tag="DSY0111"
/note="DNA polymerase III subunits gamma and tau;
Validated; Region: PRK05563"
/db_xref="CDD:235505"
misc_feature 114188..114661
/locus_tag="DSY0111"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 114266..114289
/locus_tag="DSY0111"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(114269..114292,114509..114511,114602..114604)
/locus_tag="DSY0111"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 114497..114514
/locus_tag="DSY0111"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 114647..114649
/locus_tag="DSY0111"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 114824..>115069
/locus_tag="DSY0111"
/note="DNA polymerase III subunits gamma and tau domain
III; Region: DNA_pol3_gamma3; pfam12169"
/db_xref="CDD:152604"
gene 115830..116162
/locus_tag="DSY0112"
/db_xref="GeneID:3957073"
CDS 115830..116162
/locus_tag="DSY0112"
/note="similarity to COG0718 Uncharacterized BCR(Evalue:
5E-31)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516345.1"
/db_xref="GI:89892858"
/db_xref="GeneID:3957073"
/translation="MAFKGGGMGNMGNMLKQAQKLQEEMAKAQEELKTRTVEASVGGG
AVQVVVNGKNELVELKIKPEAVDPDDVEMLEDLVKAAVNEGLRKVEELVSSEMGKLTN
GLKIPGLF"
misc_feature 115872..116159
/locus_tag="DSY0112"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:234669"
gene 116173..116769
/gene="recR"
/locus_tag="DSY0113"
/db_xref="GeneID:3957074"
CDS 116173..116769
/gene="recR"
/locus_tag="DSY0113"
/note="involved in a recombinational process of DNA
repair, independent of the recBC complex"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="YP_516346.1"
/db_xref="GI:89892859"
/db_xref="GeneID:3957074"
/translation="MDFLNYPEPLADLITGLSRLPGIGPKTAGRLAFYLLQQPQVAEN
LAETMIRAQREIRQCSLCCNYTDHDPCPICTGEKRERTLLCIVEQPRDVVSLEKTREF
KGLYHVLHGVISPLEGVGPEQLTISKLLGRLEGVQEVVMAMNPTVEGEATALYLSRLL
KPLGIKVTRIAHGLPVGGDLEYADEITIARALEGRRQI"
misc_feature 116188..116766
/gene="recR"
/locus_tag="DSY0113"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:234616"
misc_feature 116290..116409
/gene="recR"
/locus_tag="DSY0113"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature 116416..116745
/gene="recR"
/locus_tag="DSY0113"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature order(116434..116439,116446..116448,116602..116604,
116608..116610,116614..116616)
/gene="recR"
/locus_tag="DSY0113"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature order(116434..116436,116602..116604)
/gene="recR"
/locus_tag="DSY0113"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature order(116452..116460,116464..116469,116584..116586,
116590..116592,116596..116598,116605..116607,
116641..116643,116671..116706,116710..116712,
116725..116727,116731..116733,116737..116745)
/gene="recR"
/locus_tag="DSY0113"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene 116808..117113
/locus_tag="DSY0114"
/db_xref="GeneID:3957075"
CDS 116808..117113
/locus_tag="DSY0114"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516347.1"
/db_xref="GI:89892860"
/db_xref="GeneID:3957075"
/translation="MSTFCIIWTSSGKGGLIMTLIFLALFVLLIGLVVKSSLGQPNTF
LKAGIHILGGIVGLWIFDLILSVVGFGIPINVFTITLVGLLGFPGVVALVGLQVLGI"
gene 117490..121020
/gene="porA"
/locus_tag="DSY0115"
/db_xref="GeneID:3958244"
CDS 117490..121020
/gene="porA"
/locus_tag="DSY0115"
/EC_number="1.2.7.-"
/note="similarity to COG0674 Pyruvate:ferredoxin
oxidoreductase and related 2-oxoacid:ferredoxin
oxidoreductases, alpha subunit(Evalue: 1E-165)"
/codon_start=1
/transl_table=11
/product="pyruvate ferredoxin oxidoreductase"
/protein_id="YP_516348.1"
/db_xref="GI:89892861"
/db_xref="GeneID:3958244"
/translation="MAKMKTMDGNEAAALASYAFTEVATIFPITPSSTMAELVDEWAA
HNKKNIFGQPVKVVEMQSEAGAAGAVHGSLQAGALTTTYTASQGLLLMIPNMYKIAGE
LLPSVFHVSARALATHALSIFGDHQDVMSVRATGFAQLSSHNVQEALDLGFIAHLATI
KAKVPFVHFFDGFRTSHEIQKIEVTDYDDVAKLLDRDALQAFRDNALNPERPVLRGTA
QNPDVYFQGREVSNRYYDAVPDIVAHYMDEYAKITGREYQPFQYYGAEDAERVIIAMG
SVCDTIEETVDYLVAKGEKVGVVKVHLFRPFSTKYLFKVLPKTVKAIAVLDRTKEPGS
TGEPLYLDVKDSFFNHEIKPVIVGGRYGLGSKDTTPSQVLAVYKNLAQAEPKNDFTIG
IVDDVTFKSLPEDEVVSTAPEGTIACKFWGLGSDGTVGANKQAIKIIGDHTTMYAQAY
FQYDSKKSGGITISHVRFGKKPIKSPYYVSDANYVACHNQAYVGQYDLTKGLKKGGTF
VLNCQWQPEELADKLPASMKQFIAKNDIKLYIIDAVSIAREIGLGSRINMVMQSAFFK
LANVIPVEEALGYLKESVVKTYGKKGQNIVDMNNAAIDRGADSLVKVEVPASWADAAP
AQAEAAAAADLPEYVAKIQNVMNAQEGDSLPVSAFVGREDGTVPVGTTAYEKRGIAVI
VPEWDVEKCIQCNQCSYVCPHAAIRPFLLNEEEVANAPEGFVTKKALGKEADGLQLRV
QVSPLDCTGCGNCAEVCPAKGKALVMKDAAEQTAAQAGNWEYALTVTNKAERFDITTV
KGSQFAQPLLEFNGACPGCGETAYVKLLTQLYGDRMMIANATGCSSIWGGSAPSVPYT
VNAKGQGPTWANSLFEDNAEFGYGMYLGVRQQREKLALLMEEACATEISADMKEAFQE
WIAGMDDADASKAAAAKVRAALDVYEGDSALIADIKGRKDHLVKKSQWIVGGDGWAYD
IGYGGLDHVLASGDDVNILVMDTEVYSNTGGQSSKATPRAAVAKFAAAGKKIRKKDLG
MMAMSYGYIYVAQVALGANMAQTIKAMKEAEAYKGPSIIIAYAPCINHGLKSGMSKSV
TEAKKAVEAGYWHLYRFNPDLEDQGKNPFTLDSKEPTASFRDFLMGEVRYTSLINTFP
ESAEELFEGAEKYAKVRLDSYKRLASYKYE"
misc_feature 117499..121002
/gene="porA"
/locus_tag="DSY0115"
/note="pyruvate:ferredoxin (flavodoxin) oxidoreductase,
homodimeric; Region: pyruv_ox_red; TIGR02176"
/db_xref="CDD:131231"
misc_feature 117514..118005
/gene="porA"
/locus_tag="DSY0115"
/note="Pyrimidine (PYR) binding domain of pyruvate
ferredoxin oxidoreductase (PFOR), indolepyruvate
ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
cd07034"
/db_xref="CDD:132917"
misc_feature order(117556..117561,117577..117579,117589..117591,
117598..117600,117661..117672,117691..117696,
117700..117708,117715..117717,117721..117723,
117772..117774,117781..117783,117793..117795,
117832..117837,117886..117891)
/gene="porA"
/locus_tag="DSY0115"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature order(117556..117561,117568..117573,117577..117579,
117595..117600,117661..117672,117691..117696,
117700..117708,117715..117717,117721..117723,
117772..117774,117781..117783)
/gene="porA"
/locus_tag="DSY0115"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature order(117571..117573,117676..117678)
/gene="porA"
/locus_tag="DSY0115"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132917"
misc_feature order(117577..117579,117826..117828)
/gene="porA"
/locus_tag="DSY0115"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:132917"
misc_feature 118732..119337
/gene="porA"
/locus_tag="DSY0115"
/note="Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, gamma subunit
[Energy production and conversion]; Region: PorG; COG1014"
/db_xref="CDD:223946"
misc_feature 119389..119532
/gene="porA"
/locus_tag="DSY0115"
/note="Domain of unknown function; Region: EKR;
smart00890"
/db_xref="CDD:197958"
misc_feature 119536..119607
/gene="porA"
/locus_tag="DSY0115"
/note="4Fe-4S binding domain; Region: Fer4_6; pfam12837"
/db_xref="CDD:205098"
misc_feature <119551..>120024
/gene="porA"
/locus_tag="DSY0115"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:246686"
misc_feature 119905..121005
/gene="porA"
/locus_tag="DSY0115"
/note="Thiamine pyrophosphate (TPP family), PFOR_PNO
subfamily, TPP-binding module; composed of proteins
similar to the single subunit pyruvate ferredoxin
oxidoreductase (PFOR) of Desulfovibrio Africanus, present
in bacteria and amitochondriate eukaryotes. This...;
Region: TPP_PFOR_PNO; cd03377"
/db_xref="CDD:239472"
misc_feature order(119944..119946,120013..120015,120100..120105,
120385..120396,120472..120474,120478..120480,
120484..120492)
/gene="porA"
/locus_tag="DSY0115"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:239472"
misc_feature order(119983..119991,120031..120033,120046..120048,
120070..120078,120082..120099,120106..120108,
120115..120120,120127..120132,120136..120141,
120148..120153,120160..120162,120169..120171,
120349..120351,120364..120366,120412..120414,
120424..120429,120445..120447,120490..120495,
120508..120510,120529..120531,120535..120537,
120544..120546,120556..120558,120568..120570,
120580..120585,120592..120594,120715..120720,
120736..120747,120895..120897,120907..120909,
120916..120918,120922..120924,120931..120933,
120985..120987)
/gene="porA"
/locus_tag="DSY0115"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239472"
gene 121180..122547
/locus_tag="DSY0116"
/db_xref="GeneID:3957076"
CDS 121180..122547
/locus_tag="DSY0116"
/note="similarity to COG1373 Uncharacterized ATPases of
the AAA superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516349.1"
/db_xref="GI:89892862"
/db_xref="GeneID:3957076"
/translation="MGGSLVERIIMQDLLRWKNSKHRKPLILKGVRQVGKTWLLKEFA
RRYYNNLAYFNFDEHPEYKQFFENTKDVERILQNLMMAGGQIINPKEPGTTLIVFDEI
QECPNALNTLKYFCENTPHYHVACAGSLLGIALSKPASFPVGKVDFLEIGPMTFTEFL
LANGDGNFVSYLDNLDRIEPIPDAFFNPLYEKLKMYFVTGGMPESVRSWTEERDVELV
QQVLANILGAYERDFAKHPDPKDFPKISLIWKSLPSQLARENKKFIYKVVKEGARARE
YEEALQWLCDASLAYKIYRSSAPGLPFSAYDDLAAFKLYLVDVGLLRRLSLLAPSAFG
EGNRLFVEFKGALSENYVLQALRNQLEAMPRYWTMDNPRHEVDFLIQRENEIIPVEVK
SETNVESRSLKKFKEKYGDKVKLRVRFSLNNLRLDGDLLNIPLFITDYADKLIGMALT
GQPKE"
misc_feature 121243..121659
/locus_tag="DSY0116"
/note="AAA domain; Region: AAA_14; pfam13173"
/db_xref="CDD:221955"
misc_feature 121864..122361
/locus_tag="DSY0116"
/note="Domain of unknown function (DUF4143); Region:
DUF4143; pfam13635"
/db_xref="CDD:222275"
gene 122613..123095
/locus_tag="DSY0117"
/db_xref="GeneID:3957077"
CDS 122613..123095
/locus_tag="DSY0117"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516350.1"
/db_xref="GI:89892863"
/db_xref="GeneID:3957077"
/translation="MDMDQEDLIRRLNWFYSLEMNQVELYKVQSKQFKDHYAGQVFER
VAAIEQSHVDNVAARITSLGAKPTLLGEVVSPILGMSLGNLMSLTGLERALQLNMELE
RKAMSDYKKLIEDLVAGGEDPGGDLCSQLKDNFVDEHLHTALFDTLRENLMEDKIETL
"
misc_feature 122646..>122954
/locus_tag="DSY0117"
/note="Ferritin-like superfamily of diiron-containing
four-helix-bundle proteins; Region: Ferritin_like;
cd00657"
/db_xref="CDD:153097"
misc_feature order(122667..122669,122757..122759,122766..122768,
122916..122918)
/locus_tag="DSY0117"
/note="dinuclear metal binding motif [ion binding]; other
site"
/db_xref="CDD:153097"
gene 123284..124864
/locus_tag="DSY0118"
/db_xref="GeneID:3957078"
CDS 123284..124864
/locus_tag="DSY0118"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516351.1"
/db_xref="GI:89892864"
/db_xref="GeneID:3957078"
/translation="MVVLAKRFFTMIKELTQRPYRKRIRVVHKVPIDQEWDKPVSFAR
IKEELSKSSDIIFRDFILRGKEDIPCSLGMVDGLVDKDLLDAYILRVIMVEAVDDPVF
QEMTLKNVNDRLLDLFTPANEVKKIGRLGEAIDGMLSGDAVLFIKESQEALVISARGW
SDRGVGVPQNESSIRGPKEGFNETLRTNTSLLRRKIKHPSLRLVSMKIGDLSKTDVVI
AYVETIADMDVVGEVLKRLSRIRTDAVISGDMLEELIEDHPYSPFPQVSNTERPDIVA
ADLLEGRVAIMVDGTPSALIVPVTLPTFMQVNDDYYQRAMIVIIVRTIRYWGAAIALL
APSLYIAVTTFHQELLPTPLVLSLAANREAVPFSALGEALLMLLALEILQEGGLRLPK
PIGQTIGIVGALIIGEAAVSAGLISPIMVIVIGLTAVSGYTIPYYDLAIAIRLIRLPL
MILAGTMGFFGLAIGLYLSIIHLLALRSFGTPYLSPIAPLRIRAFFQDTFVRAPWWAS
RKIPDLVDVHDTKSGRKK"
misc_feature 123410..124828
/locus_tag="DSY0118"
/note="Bacillus/Clostridium GerA spore germination
protein; Region: GerA; pfam03323"
/db_xref="CDD:190601"
gene 124865..125977
/locus_tag="DSY0119"
/db_xref="GeneID:3955792"
CDS 124865..125977
/locus_tag="DSY0119"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516352.1"
/db_xref="GI:89892865"
/db_xref="GeneID:3955792"
/translation="MERISTHQFTILSTAVLLGTTYMVAGSALAGTAGRDGWMAILPG
FALGIPLAFMIFSLMPRYPGMNLIEISEKVLGKWLGKGMGLLYSAITLYFGAILLGQG
VDMYNRSVLPLMPQYILVLGLFVIVVYLYFSGIEVLSRFSEVVFPIIFLSLVFIALFS
IPRFERGELFPMLDNGIRPLLKAMSNVAPWPMEYILFLGGLLPFLPRKAKDLKVLKKG
VFKAFFMVIALSTLMVVIQIMTFGPFETSRLTYALLVLGNMVEISRTISGVEVIFTLI
WTGALALKVTALLFAGIWGLRTVFGIKSRKASVRTGVVVGIIYVLIPLYTLTGITVVV
EIQLVDQYLILPFTMVWVVLIWGVERWKRRKKSFSH"
misc_feature 124871..125842
/locus_tag="DSY0119"
/note="Spore germination protein; Region: Spore_permease;
cl17796"
/db_xref="CDD:248350"
gene 125944..127185
/locus_tag="DSY0120"
/db_xref="GeneID:3955793"
CDS 125944..127185
/locus_tag="DSY0120"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516353.1"
/db_xref="GI:89892866"
/db_xref="GeneID:3955793"
/translation="METPQKKFFPLRLTLVLLLIMGVLLLGGCGGKREIDELAYMLGI
GIDQGKEEGTYLVTMQIAEPKTSGGGAAELENWTISMETKSISTIMEQAAEAFSKQPF
AGTVRVIVLGEDLAGAGINEALDYFQRFYEFRRTIYLLVAKGQAKDIMEAELRTKQIP
SLNLFDTIEGQSRQSVFPITRLGHYLTVLGRESQNPIIPRVEKIQPGEHGLFYSDKEG
EEMLIHESAVFEGGKCVAKLNDQETKGYLWLDNEIESRVLEGEDGDGVTVTAWVLNSK
TKYKVENIDGKMGIKFNIKTTVSINEILGKGEQADIYRWQQFIKELQPLMAQAIQEEC
EAAVAKSKEQGLDFIGIGRKIEIKNPKYWREIKENWPQGIKDIPVAYDINVKIEHSGL
ARNSPVSPQENGAKGGSHTLQ"
misc_feature 126037..127125
/locus_tag="DSY0120"
/note="germination protein, Ger(x)C family; Region:
spore_ger_x_C; TIGR02887"
/db_xref="CDD:234048"
misc_feature 126619..127119
/locus_tag="DSY0120"
/note="Spore germination B3/ GerAC like, C-terminal;
Region: Spore_GerAC; pfam05504"
/db_xref="CDD:218615"
gene 127229..128671
/locus_tag="DSY0121"
/db_xref="GeneID:3955794"
CDS 127229..128671
/locus_tag="DSY0121"
/note="similarity to COG1982 Arginine/lysine/ornithine
decarboxylases(Evalue: 3E-55)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516354.1"
/db_xref="GI:89892867"
/db_xref="GeneID:3955794"
/translation="MSILEEENVLNLGHKLLQYEAQKLISFHTPGHKGKAEFFTDLHF
PDQDLTELPGLDMLHSPAGVIAQAQARAAAVYQSDASFYLINGATVGNQGMFMALAGT
GKRGKDLQLPKVLVERQSHRSVFSALVLSGCEPEYIPSVVHPEFGLPLGLKSIAEVDL
GEFLGVHLTYPGYYGTLPDLAMIAAQRDRQAVQVSILVDQAHGSHYLSPLFPKGALAY
GADLVLCSTHKTLSALTQAAMLHVQGSRIPLSALKEALELLQSSSPSYLLMASLERAV
EHALESRRWELLHEAVQELHHRVGGSLRILNPQDVGTYGIAGLDWTKIMINTQRLGVA
APRCVEHLRKSYGIDPELWDDKNILFLLGIGNTPEEVEILTKGLLSLASLNKDVVASP
EEMVFEIPLPPVRLTPRQAYFARKRKIPLAESVGHIVGESISPYPPGIPWIVMGEEMT
PEILELLTRHKGRWQGWEDAGQGVWIIEEV"
misc_feature 127271..128662
/locus_tag="DSY0121"
/note="Arginine/lysine/ornithine decarboxylases [Amino
acid transport and metabolism]; Region: LdcC; COG1982"
/db_xref="CDD:224893"
misc_feature 127271..128119
/locus_tag="DSY0121"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:241782"
misc_feature order(127490..127495,127502..127504,127733..127735,
127823..127825,127832..127834,127904..127906,
127913..127915)
/locus_tag="DSY0121"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 127913..127915
/locus_tag="DSY0121"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
misc_feature <128429..>128584
/locus_tag="DSY0121"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene 128634..129521
/locus_tag="DSY0122"
/db_xref="GeneID:3955795"
CDS 128634..129521
/locus_tag="DSY0122"
/note="similarity to COG0470 ATPase involved in DNA
replication(Evalue: 2E-26)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516355.1"
/db_xref="GI:89892868"
/db_xref="GeneID:3955795"
/translation="MQAKESGSSRRFNVNIALHLIEKAAQEGRLAHLLLFHGGSGPER
RKAGLEIARRINCTSGQDAPCGHCPSCKKILSGNHPDVEVVKPAKASIGIEQILDWQE
RVYRKHYEGNYKVFILEEADKLTIPAANALLKVIEEPPERTLIVLSAQNAEVLLPTIQ
SRAQAVYFPFRGEEEWLKSLEESLDPWEAREAFRLSSHNPELAYEILTLGVEKVKEWV
RGFEQAVEEGDFLKLFPLFPVEKKEAELYLHILALGTAQKHQVNPQAMLAVGKAIEQI
QMQANPRLVIEGLALKLFQ"
misc_feature 128676..129140
/locus_tag="DSY0122"
/note="DNA polymerase III, delta subunit; Region:
DNA_pol3_delta2; pfam13177"
/db_xref="CDD:221959"
misc_feature <128946..>129119
/locus_tag="DSY0122"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK08485"
/db_xref="CDD:236274"
gene 129535..130383
/locus_tag="DSY0123"
/db_xref="GeneID:3955796"
CDS 129535..130383
/locus_tag="DSY0123"
/note="similarity to COG1774 Uncharacterized ACR, PSP1
homologs(Evalue: 7E-87)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516356.1"
/db_xref="GI:89892869"
/db_xref="GeneID:3955796"
/translation="MVEVVGVRFKRAGKIYYFSTGDLALNANDKVIVETARGVEYGEC
VLAPRQVPEADVVMPLKPVIRKATPEDERIVEVNRTKEKEAFDICLKKIGDHQLPMKL
VDVEYTFDGNKIIFSFTAEGRVDFRELVKDLASIFRTRIELRQIGVRDEAKMLGGIGS
CGRVLCCSSFLGDFEPVSIRMAKDQKLSLNPTKISGICGRLMCCLKYENGAYDESHCK
GQCGKQCHQREEDILVLSEESVLKALEEQELKGERGSAVPTAGKGRQEGRHKKGEKNR
GKSEKV"
misc_feature 129535..130176
/locus_tag="DSY0123"
/note="Uncharacterized homolog of PSP1 [Function unknown];
Region: COG1774"
/db_xref="CDD:224688"
gene 130380..130691
/locus_tag="DSY0124"
/db_xref="GeneID:3955797"
CDS 130380..130691
/locus_tag="DSY0124"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516357.1"
/db_xref="GI:89892870"
/db_xref="GeneID:3955797"
/translation="MSQLTQALTEVEEKLNSLIEEVQRLLPYVKSLEDENARLKRELC
ALPEKERSRVIANAEHLQGVAHDNLERLYREGFHVCHLHFGQPLEEGDCLFCMGFLRK
D"
misc_feature 130389..130670
/locus_tag="DSY0124"
/note="Protein of unknown function (DUF972); Region:
DUF972; pfam06156"
/db_xref="CDD:218915"
gene 130712..131557
/locus_tag="DSY0125"
/db_xref="GeneID:3955798"
CDS 130712..131557
/locus_tag="DSY0125"
/note="similarity to COG0313 Predicted
methyltransferases(Evalue: 4E-65)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516358.1"
/db_xref="GI:89892871"
/db_xref="GeneID:3955798"
/translation="MATVQRGTLYICGTPIGNLGDITLRALEVLKGVDLIAAEDTRHS
RKLLDHFGIATPLTSYHEHNEKGKALELVRRLEQGEAIALISDAGMPGISDPGQEVIQ
LCLEKGIPLDVLPGANAGLTALLLSGMPNDHFLFHGFLPSQSGARKKELQNYAQLPFT
QIFYEAPHRLVATLEDLWEVFGERETAVVREITKLHQSVHKGTLSTLIHEFKDTAPRG
EICVLTSPYIPVPPTGGEKEWRQEVQELTEQGMKPNDAMKVVAQKYGVSKREVYQAVL
SQKKN"
misc_feature 130730..131548
/locus_tag="DSY0125"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:223390"
misc_feature 130736..131389
/locus_tag="DSY0125"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(130757..130759,130973..130981,130988..130993,
131063..131068,131201..131203,131276..131278,
131282..131287,131366..131374)
/locus_tag="DSY0125"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(130775..130786,130790..130792,130979..130996,
131003..131008,131012..131017,131048..131050,
131054..131065,131069..131074,131081..131086,
131111..131125)
/locus_tag="DSY0125"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene complement(131690..131959)
/locus_tag="DSY0126"
/db_xref="GeneID:3955799"
CDS complement(131690..131959)
/locus_tag="DSY0126"
/note="similarity to COG2002 Regulators of
stationary/sporulation gene expression"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516359.1"
/db_xref="GI:89892872"
/db_xref="GeneID:3955799"
/translation="MKSTGIVRKVDELGRVVLPIELRRTLGIDEKDALEIYVDQEKII
LKKYEPACVFCNNATDVQIFRGKNVCRECATAMGEAASGNQPEAV"
misc_feature complement(131807..131938)
/locus_tag="DSY0126"
/note="SpoVT / AbrB like domain; Region: SpoVT_AbrB;
smart00966"
/db_xref="CDD:198034"
gene 132210..132512
/locus_tag="DSY0127"
/db_xref="GeneID:3955800"
CDS 132210..132512
/locus_tag="DSY0127"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516360.1"
/db_xref="GI:89892873"
/db_xref="GeneID:3955800"
/translation="MNRGSATLRKPRSPDRPSAKSVRFCAQSHVLRVSFSSFSFSWGA
EALLQSLSRSSRPCRSSGVGKDGKSNSGQVLTFPATPAYSNPKSSPRILIYVRERI"
gene 132905..134848
/locus_tag="DSY0128"
/db_xref="GeneID:3955801"
CDS 132905..134848
/locus_tag="DSY0128"
/note="similarity to COG0143 Methionyl-tRNA
synthetase(Evalue: 1E-161)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516361.1"
/db_xref="GI:89892874"
/db_xref="GeneID:3955801"
/translation="MKYYITTPIFYPNASPHIGTAYTTVAADAFARYHRLKGHDVYFL
TGTDENAQKIVRTAESQGMEPLAYVDGVVERFKALWEELDISYDDFIRTTEERHHEVV
KKIFTKLYEQGDIYKSEYEGWYCTPCETFWTENKLIDGKCPNPDCGRDVELLKEESYF
FKLSKYQDALLRHIKDHPDFIQPASRRNEMIKFIEGGLEDLCVSRTTFQWGIQVPFNP
KHVVYVWLDALINYISALGYPDGELYQRYWPAEVHLMGKDIVRFHAVIWPIILMALDV
PLPKVVYGHGWYLSKEGGKISKSRGNVQDSFKLIRRYGSDAIRYFLLREMQVGTDGAY
SEDSLVERLNSDLANDLGNFVSRSLAMIVKYRGGVIPKAGEPTELEAELRALGQEVVA
KVEERLEAHDPAGALENLWRLVSRMNKYVDETAPWTLAKQEGQQERLDTVLHTFAEAI
RVLGILCAPFMPKLTGKMFRQCGISDELLAWEAAKEWDVLGEGIQVQRGEALFPRIDL
AQFSIEEEKASVNEIKETPAVEENKVEFEPIKEEISIDDFAKIDLRVAKVLHAEKVEK
TDKLLKLEIEVAGKPRTIVSGIAQHYAPEDLVGKHVVIVANLKPAKLRGITSEGMILA
ASHEGVLEVLVLDKELPAGARVK"
misc_feature 132905..134845
/locus_tag="DSY0128"
/note="methionyl-tRNA synthetase; Reviewed; Region:
PRK12267"
/db_xref="CDD:237028"
misc_feature 132908..133906
/locus_tag="DSY0128"
/note="catalytic core domain of methioninyl-tRNA
synthetases; Region: MetRS_core; cd00814"
/db_xref="CDD:173907"
misc_feature order(132926..132931,132935..132937,133046..133048,
133577..133579,133586..133591,133598..133600,
133679..133681,133691..133693)
/locus_tag="DSY0128"
/note="active site"
/db_xref="CDD:173907"
misc_feature 132953..132964
/locus_tag="DSY0128"
/note="HIGH motif; other site"
/db_xref="CDD:173907"
misc_feature 133787..133801
/locus_tag="DSY0128"
/note="KMSKS motif; other site"
/db_xref="CDD:173907"
misc_feature 133931..134317
/locus_tag="DSY0128"
/note="Anticodon-binding domain of methionyl tRNA
synthetases; Region: Anticodon_Ia_Met; cd07957"
/db_xref="CDD:153411"
misc_feature order(133934..133936,133955..133960,133967..133972,
133979..133984,133991..133996,134003..134008,
134156..134161,134165..134170,134183..134185)
/locus_tag="DSY0128"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153411"
misc_feature order(133955..133957,133967..133972,133979..133984,
133991..133996,134003..134008,134165..134167,
134183..134185)
/locus_tag="DSY0128"
/note="anticodon binding site; other site"
/db_xref="CDD:153411"
misc_feature 134531..134845
/locus_tag="DSY0128"
/note="tRNA-binding-domain-containing Escherichia coli
methionyl-tRNA synthetase (EcMetRS)-like proteins. This
family includes EcMetRS and Aquifex aeolicus Trbp111
(AaTrbp111). This domain has general tRNA binding
properties. MetRS aminoacylates methionine...; Region:
tRNA_bind_EcMetRS_like; cd02800"
/db_xref="CDD:239199"
misc_feature order(134534..134536,134675..134677,134723..134731,
134738..134740,134774..134785,134801..134803,
134807..134809,134813..134815,134822..134824,
134834..134845)
/locus_tag="DSY0128"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239199"
misc_feature order(134609..134611,134645..134647,134723..134725,
134735..134737,134756..134758,134765..134767)
/locus_tag="DSY0128"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:239199"
gene 134845..135606
/locus_tag="DSY0129"
/db_xref="GeneID:3955802"
CDS 134845..135606
/locus_tag="DSY0129"
/note="similarity to COG0084 Mg-dependent DNase(Evalue:
5E-65)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516362.1"
/db_xref="GI:89892875"
/db_xref="GeneID:3955802"
/translation="MIWDTHAHLDDPRYQGDFQGVLDNMARAHITRVTNVGYDLPSSE
RSVRLAHQYDAVYAAVGVHPHDAQGAAEETWESLTQLAREDKVIAWGEIGLDYYRDLS
PRKIQQEVFIRQIELADQAGLPIIIHNRDAHQDLLEIVKAHTPKKGGVFHCYSGSWEM
AKLILNLGFYISFAGPLTFKNARHTVEVAEKVPLDRFLVETDSPYLTPEPYRGKRNEP
AYVRQVVERFATIRGLEVEEAARLAFENGNRLFGL"
misc_feature 134845..135603
/locus_tag="DSY0129"
/note="Predicted metal-dependent hydrolases with the
TIM-barrel fold [General function prediction only];
Region: COG1099"
/db_xref="CDD:224024"
misc_feature 134848..135600
/locus_tag="DSY0129"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:238635"
misc_feature order(134860..134862,134866..134868,135226..135228,
135298..135300,135448..135450)
/locus_tag="DSY0129"
/note="active site"
/db_xref="CDD:238635"
gene 135824..136672
/locus_tag="DSY0130"
/db_xref="GeneID:3955803"
CDS 135824..136672
/locus_tag="DSY0130"
/note="similarity to COG3584 Uncharacterized BCR"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516363.1"
/db_xref="GI:89892876"
/db_xref="GeneID:3955803"
/translation="MYSLPIATYTDYWRLAKNRSLTMGGTLVLAGSTLLYAPADAFPK
RMELTLPVFERNSQSPASAPGSQALGREETLLNPEGTALPLAEGIGAAEGVGVEIGQI
AMTYRIEDVEIPINTEYIESDRVLPGTSQVQEEGQVGIERQVIRRTTIGGELSDEQIV
NQFFLNAPKKRVVIQNTRPVERSDVDLSQYTVLKTFEVEATAYTYTGNPTATGVWPRE
GLIAVDPRVIPLGTEVYVEGYGHAIAADTGGAIKGNIIDVFFPSLQRCIQWGRRPVVI
HILDNK"
misc_feature 136145..136360
/locus_tag="DSY0130"
/note="G5 domain; Region: G5; pfam07501"
/db_xref="CDD:219434"
misc_feature 136403..136657
/locus_tag="DSY0130"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3584"
/db_xref="CDD:226112"
gene 136766..137935
/locus_tag="DSY0131"
/db_xref="GeneID:3955804"
CDS 136766..137935
/locus_tag="DSY0131"
/note="similarity to COG3584 Uncharacterized BCR"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516364.1"
/db_xref="GI:89892877"
/db_xref="GeneID:3955804"
/translation="MLEKTRTSVFSLVRSSRKAQISVTLLTVAFIVASVFLLKAKTVT
VEIDGGKQSLTTLYSTVGAALEHSRLGIYPEDIVEPNRETDIAKGLEIKITRSLPVEL
TVDGETYPARTPAPTVGEALVDLSNRLGLDLKVTDEVNLHREAVLVADAKLEVRRAVP
VKVKVDGKEIDTYLAPRTVEEALEKLDIVLNEKDKVSLPMKHMIEAEDEIQVVRVEEK
IETMTNEIPYQTVAQPADFPIGLPDKVVTKGVNGQHEQTVKITMEDGIEVAREVLQQE
VLRAPVNQVVSRGSQTTISRGGKTIEFKRAYLMRASAYSGGGRTATGHNVRYGVIAVD
PRVIPLGTEVYVDGYGEAVALDTGGAIKGNRVDLYMNTEESCWSWGVRSVVVYVK"
misc_feature 136787..137641
/locus_tag="DSY0131"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3583"
/db_xref="CDD:226111"
misc_feature 136889..137017
/locus_tag="DSY0131"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 137060..137200
/locus_tag="DSY0131"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 137243..137356
/locus_tag="DSY0131"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 137405..137641
/locus_tag="DSY0131"
/note="G5 domain; Region: G5; pfam07501"
/db_xref="CDD:219434"
misc_feature 137609..137929
/locus_tag="DSY0131"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3584"
/db_xref="CDD:226112"
gene 138147..138863
/locus_tag="DSY0132"
/db_xref="GeneID:3955805"
CDS 138147..138863
/locus_tag="DSY0132"
/note="similarity to COG0860 N-acetylmuramoyl-L-alanine
amidase(Evalue: 3E-35)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516365.1"
/db_xref="GI:89892878"
/db_xref="GeneID:3955805"
/translation="MRRPIVIPGRQTQGMAIIIVLTVMFGLVLSVFYQGSAAVLGPLE
TKYKVVVDAGHGGYDPGAITKQGVYEKEINLEMAKRVKELLEPAGIEVILTREEDIDY
VPEGVRGRQSKKQADLNHRISLAAEAEADTLISLHLNATPSGRNTGAETFYYFDSEEG
KRLAETIQQELIKVPGMNRRIAKPGDFYLIKNAPMPAVIVELGYISNPKEFARLRQSW
YQDQLAQAVAKGVANYFGLP"
misc_feature 138282..138860
/locus_tag="DSY0132"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:223929"
misc_feature 138288..138842
/locus_tag="DSY0132"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature order(138309..138311,138354..138356,138555..138557,
138747..138749)
/locus_tag="DSY0132"
/note="active site"
/db_xref="CDD:119407"
misc_feature order(138309..138311,138354..138356,138555..138557)
/locus_tag="DSY0132"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
gene 139085..140239
/locus_tag="DSY0133"
/db_xref="GeneID:3955806"
CDS 139085..140239
/locus_tag="DSY0133"
/note="similarity to COG3325 Chitinase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516366.1"
/db_xref="GI:89892879"
/db_xref="GeneID:3955806"
/translation="MKRFLTLNLIAVLVLSFSLVGCNTAQQQNTQAPNQIATESGEPP
KAEAETRQDVLGEEKRVVMGFYTDPEGEIPGSKESMMKNIKLMDEVSFFWYSFDANGK
ILTTGKKDLSIKEAAQKNGAKAYALIHNMRGGLFDANLAHSVFANPQTRSKFINNIVQ
LVINEKWDGVAIDIEKTPPADRNNFTAFLGELHGALKAKDKVLNVSIPAKFIDYPSDL
WSGAYDYASIGKNADQIVLMTYDEHGLGTTHGPISSHAWVNKVISYAVTKIPREKIVL
GLPVYSFDWGSNKPTMPDYLSYEQSMARAKKHGVEVGYDEEHKVPWYTYTANGVRHEV
YFENKQSLQPKMEYAREHKLHGVAIWRLGMEDPSIWDSLVKTYGTNKNKK"
misc_feature 139265..140203
/locus_tag="DSY0133"
/note="Cortical fragment-lytic enzyme (CFLE) is a
peptidoglycan hydrolase involved in bacterial endospore
germination. CFLE is expressed as an inactive preprotein
(called SleB) in the forespore compartment of sporulating
cells. SleB translocates across the...; Region:
GH18_CFLE_spore_hydrolase; cd02874"
/db_xref="CDD:119353"
misc_feature order(139274..139276,139361..139366,139490..139492,
139595..139597,139601..139603,139607..139609,
139796..139798,139802..139807,139925..139927,
140162..140164)
/locus_tag="DSY0133"
/note="active site"
/db_xref="CDD:119353"
gene 140384..140992
/locus_tag="DSY0134"
/db_xref="GeneID:3955807"
CDS 140384..140992
/locus_tag="DSY0134"
/note="similarity to COG1658 Small primase-like proteins
(Toprim domain)(Evalue: 1E-31)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516367.1"
/db_xref="GI:89892880"
/db_xref="GeneID:3955807"
/translation="MIEELIVVEGKNDAHAVRRALGNVDILWTEGYGLTQEKLAYIAE
AAKRCGVIVLTDPDSVGEQIRERIRRQVPEAKHVYLSKKDARSPKDDDIGVENASPED
IQKAFQKIRTDTLYSEPKNNEYPTAGTSFTMKDLLEAGLAGLSHSAERRLAVGKILGI
GDANAKQFLRRLNRFGITHEEFNKAVREAIHGERSELYPAHP"
misc_feature 140387..140944
/locus_tag="DSY0134"
/note="ribonuclease M5; Region: 5S_RNA_mat_M5; TIGR00334"
/db_xref="CDD:232924"
misc_feature 140387..140623
/locus_tag="DSY0134"
/note="TOPRIM_ RNase M5_like: The topoisomerase-primase
(TOPRIM) nucleotidyl transferase/hydrolase domain found in
Ribonuclease M5: (RNase M5) and other small primase-like
proteins from bacteria and archaea. RNase M5 catalyzes
the maturation of 5S rRNA in low...; Region:
TOPRIM_RNase_M5_like; cd01027"
/db_xref="CDD:173777"
misc_feature order(140408..140413,140420..140422,140549..140551,
140555..140557,140561..140563)
/locus_tag="DSY0134"
/note="putative active site [active]"
/db_xref="CDD:173777"
misc_feature order(140408..140410,140549..140551)
/locus_tag="DSY0134"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:173777"
misc_feature 140657..140941
/locus_tag="DSY0134"
/note="Domain of unknown function (DUF4093); Region:
DUF4093; pfam13331"
/db_xref="CDD:205511"
gene 140955..141791
/locus_tag="DSY0135"
/db_xref="GeneID:3955808"
CDS 140955..141791
/locus_tag="DSY0135"
/note="similarity to COG0030 Dimethyladenosine transferase
(rRNA methylation)(Evalue: 1E-50)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516368.1"
/db_xref="GI:89892881"
/db_xref="GeneID:3955808"
/translation="MENAANYTRRILKGGAKAHKSLGQNFLMDDRVIEAIAAASIKDP
EIPVVEIGPGLGVLTRVLAQKAQKVWAVELDRGKVNLLQRELQGLPVDILNMDALKLD
LKDIWGTGKGVLVGNLPYYITSPLLMHFLEQKDSLASMVVMVQKEVADRLVAKPGGKD
YGILSIAAQVSAQGEKLFEVPPQAFWPAPKVTSAVVRFELRSYPGFRVKEKDFFRVVK
AAFSQRRKTLGNSLAGGLGLPKQQIGEILAAAGVDEQRRAETLSIDEFQAVTEAVMKN
LD"
misc_feature 140976..141785
/locus_tag="DSY0135"
/note="16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed; Region: ksgA; PRK00274"
/db_xref="CDD:234708"
misc_feature 140997..141785
/locus_tag="DSY0135"
/note="Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis]; Region:
KsgA; COG0030"
/db_xref="CDD:223109"
misc_feature order(141105..141125,141171..141176,141240..141248,
141303..141305)
/locus_tag="DSY0135"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 141883..142254
/locus_tag="DSY0136"
/db_xref="GeneID:3955809"
CDS 141883..142254
/locus_tag="DSY0136"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516369.1"
/db_xref="GI:89892882"
/db_xref="GeneID:3955809"
/translation="MRPCREEKMVKKYNYRPGREKKSRTIKKVQHRHPSEYLNDLEEW
QRYQYDPGHYLGGNIHPQLKYASGTKAGKYFAALCLMLGVISGIGTVFTFIEGVGNIL
ALLMTLLFISVGLTCFGGSKE"
gene 142230..142730
/locus_tag="DSY0137"
/db_xref="GeneID:3955810"
CDS 142230..142730
/locus_tag="DSY0137"
/note="similarity to COG0419 ATPase involved in DNA
repair"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516370.1"
/db_xref="GI:89892883"
/db_xref="GeneID:3955810"
/translation="MFWRQQRIARGARIPSIHLCTRYDRIETKEGAAMEEELLRQILT
QLQGLTSEVQGVKDEIQDLQGLKGEVQGLTGEMQGLKGEVQGLKSDVQGLKSDVQGLK
SEVQAIKDSQERMESDLSILQYDVGNLKRDVKDIKRDLGHVWTDIKHFDNRLAAQKEK
VDKLIK"
misc_feature <142488..142727
/locus_tag="DSY0137"
/note="Bacterial protein of unknown function (DUF948);
Region: DUF948; cl01972"
/db_xref="CDD:242810"
gene complement(142812..144497)
/locus_tag="DSY0138"
/db_xref="GeneID:3955811"
CDS complement(142812..144497)
/locus_tag="DSY0138"
/note="similarity to COG0685
5,10-methylenetetrahydrofolate reductase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516371.1"
/db_xref="GI:89892884"
/db_xref="GeneID:3955811"
/translation="MTCLDWIYLCEEGGNTESRRLNPIDKVEKTFREGKGIEMENRFK
QSLLDPNTLSVTWELVPGRGAREKAQESALLAAEQAAKGGKVHALTITDNPGGNPAIL
ADYLGQEILKLGIEPLVHFTCKDKNRNQMESQLYALDRAEVRSLLVMTGDYTVSGFKG
RPKPVFDLDPTHTLELIAQMNEGLGIPGPKGMSYHQPSDFFAGAAVSPFKGTEAEQMV
QYYKLKKKVTSGAQFIVTQLGYDARKIHEVLQFMKLNDLNVPLVGNIYILPFGAAKIM
NQNQLPGCVVTDKLLAEIDKERTAEDKGVSARLLRAAKMYALMKGMGFAGVHIGGHNI
KYEQVEYVIEKGEELSKDWLALVPEFDYPMPNGFYYYEKDPKTGLNTTTPVNRKNLPL
DAPVGVAYSGMRLMHSMLFTPGKNFFPVMRKIYKGRKDNRKHGLEHLAKVITNDCKDC
GDCAMFELAYLCPMSQCPKNQRNGACGGSYQGWCEVYPNQKQCIYVRAYARLKKYDEE
GDLDSHHIPPANWDLYQTSSWSNFFLGRDHSGKILGIPTPEEEAKAKGADPAK"
misc_feature complement(143436..144335)
/locus_tag="DSY0138"
/note="Methylenetetrahydrofolate reductase (MTHFR).
5,10-Methylenetetrahydrofolate is reduced to
5-methyltetrahydrofolate by methylenetetrahydrofolate
reductase, a cytoplasmic, NAD(P)-dependent enzyme.
5-methyltetrahydrofolate is utilized by methionine
synthase...; Region: MTHFR; cd00537"
/db_xref="CDD:238299"
misc_feature complement(order(143508..143510,143787..143789,
143793..143795,143820..143825,143832..143834,
143850..143852,143871..143873,143877..143879,
143901..143903,143907..143909,143979..143984,
144045..144053,144138..144140,144219..144221))
/locus_tag="DSY0138"
/note="FAD binding site [chemical binding]; other site"
/db_xref="CDD:238299"
misc_feature complement(142926..143228)
/locus_tag="DSY0138"
/note="Methylene-tetrahydrofolate reductase C terminal;
Region: MTHFR_C; pfam12225"
/db_xref="CDD:204853"
gene 144875..146590
/locus_tag="DSY0139"
/db_xref="GeneID:3953146"
CDS 144875..146590
/locus_tag="DSY0139"
/note="similarity to COG0840 Methyl-accepting chemotaxis
protein(Evalue: 3E-73)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516372.1"
/db_xref="GI:89892885"
/db_xref="GeneID:3953146"
/translation="MMAGIVGGFNIYNQTVLTQNNVDEYRKTLYEEYDRGLKMNVEIA
ISIIQGVYREQQEGLLTEAEAREKAAALVRTILFDQGNYIWVDTVEGINVVYLGKDSE
GKSRIDAVDPSGFLYIRELIKNGMQEGGGYTDYEFAKPNESEPKPKRSYTQLFEPYAW
IVGTGNWVDDIESKVSEKEMYYNQHMLNDIIKVVAAMVIGLGVVAVLAFVISGRIAQR
VQRIAQGAREVAQGNLTIDKIVVDTQDELGQLAGDFNQMTDNLAEVVKKVAYASEQVS
LTAQELSSGAEESAQAAMEVAAAVTDVAQGTERQIRSVSEVSEVVKEMAAGMEQVLTN
TGYVVRSAEETSQAAAKGQGSVETTIEQMNHIQKVVNHSAELVERLGLRSQEIGQIIE
TISGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSQGAAKQISALILEI
QGDTVKAVEAMQEGTHEVGKGAKVVVEAGSAFAEIAELIQEVTGQVRDISAEIEQISQ
GNERIIRAVEEVDQISREITDQTYGVSASTEEQSASVEEIASSCQVLENMAMELEKIL
AKFKV"
misc_feature 144959..145228
/locus_tag="DSY0139"
/note="Cache is an extracellular domain that is predicted
to have a role in small-molecule recognition in a wide
range of proteins; Region: Cache_2; smart01049"
/db_xref="CDD:214995"
misc_feature 145367..146587
/locus_tag="DSY0139"
/note="Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms]; Region:
Tar; COG0840"
/db_xref="CDD:223910"
misc_feature 145517..145663
/locus_tag="DSY0139"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(145517..145522,145529..145534,145538..145543,
145550..145555,145559..145561,145610..145615,
145619..145624,145631..145636,145640..145645,
145652..145657)
/locus_tag="DSY0139"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 145844..146437
/locus_tag="DSY0139"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(145862..145867,145874..145879,145886..145888,
145895..145900,145904..145909,145916..145918,
145925..145930,145937..145939,145946..145951,
145958..145963,145970..145972,145979..145984,
145988..145993,146003..146005,146009..146014,
146021..146023,146030..146035,146042..146047,
146054..146056,146063..146065,146072..146077,
146084..146086,146096..146098,146105..146107,
146126..146128,146138..146140,146147..146149,
146156..146161,146168..146170,146177..146182,
146189..146194,146198..146203,146210..146215,
146252..146257,146264..146266,146273..146278,
146285..146287,146294..146299,146303..146308,
146315..146320,146327..146329,146336..146341,
146348..146350,146357..146362,146366..146371,
146378..146383,146387..146392,146399..146401,
146408..146413,146420..146422,146429..146434)
/locus_tag="DSY0139"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 146072..146173
/locus_tag="DSY0139"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 146823..148589
/locus_tag="DSY0140"
/db_xref="GeneID:3953147"
CDS 146823..148589
/locus_tag="DSY0140"
/note="similarity to COG0840 Methyl-accepting chemotaxis
protein(Evalue: 2E-80)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516373.1"
/db_xref="GI:89892886"
/db_xref="GeneID:3953147"
/translation="MKSIRARLILAFIFTSMLMSIIVGGYNIYRQIDILKNNVQSYRE
TLFAEYDRGIKTDVEIAISVIDKVYKEQQAGLLSEEEAKTKAADLVRELRFDGENYFW
VDTTEGINVVLLGRDTEGKSRLDAVDPNGYAYVRDGFIKNALSGGGYSDYEFAKPNET
EPTPKRGYTQLFEPYGWVIGTGNWVDDIETEVIAQELIYQKQMSKDIISISVAMILGL
IIVSAVGFKISQGITRQVKQVAQGANEVAQGNLRIEKIQVDSRDELGQLAQDFNHMAE
NLTQLVKQVSLASEHIASSSQQLSAGAEQSAQAANEVASAITEVAQGTEKQMTAVNDV
AAVVEEMAAGMGQVLNNTEYVVRSAEGTAKATDKGQQSIHTTVKQMESIQKAVNHSAS
LVEHLGVRSQEIGQIVEAISGIADQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLA
EQSQIAAKQIADLIGEIQEDTHKAVDSMKNGTQEVEIGSKVVHEAGSAFEEIAGLIQE
VTGQVRGISHEIEEISQGNERIVASIHEVNQISKSIAEQTLNVSASTEEQSASVEEIA
SSSQLLAKMTEDMEQALHKFKI"
misc_feature 146832..>147782
/locus_tag="DSY0140"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4564"
/db_xref="CDD:226930"
misc_feature 146958..147227
/locus_tag="DSY0140"
/note="Cache is an extracellular domain that is predicted
to have a role in small-molecule recognition in a wide
range of proteins; Region: Cache_2; smart01049"
/db_xref="CDD:214995"
misc_feature 147366..148586
/locus_tag="DSY0140"
/note="Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms]; Region:
Tar; COG0840"
/db_xref="CDD:223910"
misc_feature 147516..147662
/locus_tag="DSY0140"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(147516..147521,147528..147533,147537..147542,
147549..147554,147558..147560,147609..147614,
147618..147623,147630..147635,147639..147644,
147651..147656)
/locus_tag="DSY0140"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 147861..148436
/locus_tag="DSY0140"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(147861..147866,147873..147878,147885..147887,
147894..147899,147903..147908,147915..147917,
147924..147929,147936..147938,147945..147950,
147957..147962,147969..147971,147978..147983,
147987..147992,148002..148004,148008..148013,
148020..148022,148029..148034,148041..148046,
148053..148055,148062..148064,148071..148076,
148083..148085,148095..148097,148104..148106,
148125..148127,148137..148139,148146..148148,
148155..148160,148167..148169,148176..148181,
148188..148193,148197..148202,148209..148214,
148251..148256,148263..148265,148272..148277,
148284..148286,148293..148298,148302..148307,
148314..148319,148326..148328,148335..148340,
148347..148349,148356..148361,148365..148370,
148377..148382,148386..148391,148398..148400,
148407..148412,148419..148421,148428..148433)
/locus_tag="DSY0140"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 148071..148172
/locus_tag="DSY0140"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(148579..149292)
/locus_tag="DSY0141"
/db_xref="GeneID:3953148"
CDS complement(148579..149292)
/locus_tag="DSY0141"
/note="similarity to COG3503 Predicted membrane
protein(Evalue: 3E-30)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516374.1"
/db_xref="GI:89892887"
/db_xref="GeneID:3953148"
/translation="MTSTRFPIIDSLRTLALALMITYHLIYDLDQWTGLAVDVDALFW
FSIGKTAALLFIFLSGLSSGFSKHPLKNGLRVLFFGMIITLVTYVTFPEQYVRFGILH
FLGVMMVLYPLIQKLPNGALILGSVLIIAGGLIIKDQAVNTPLLLPLGFMYPGFATMD
FYPLFPYSGVTLLGVPCYRYFFAEHSRTNASVPPAEKSKAAYPMVTWVSRHSLWIYLI
HQPILLGLIFALKAIAIIS"
misc_feature complement(148630..149280)
/locus_tag="DSY0141"
/note="Protein of unknown function (DUF1624); Region:
DUF1624; pfam07786"
/db_xref="CDD:219576"
gene complement(149378..150235)
/locus_tag="DSY0142"
/db_xref="GeneID:3953149"
CDS complement(149378..150235)
/locus_tag="DSY0142"
/note="similarity to COG0463 Glycosyltransferases involved
in cell wall biogenesis"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516375.1"
/db_xref="GI:89892888"
/db_xref="GeneID:3953149"
/translation="MYDVVIPAQNEEKSILAVLATVLKLPIKRVILVLNGCTDRTLDL
TRTILDQRIHTIYFAEPLGIDVPRAIGALYARSLHTQGVLFVDGDTSGDIYDGLAKLL
AALADGTDIALTNCYPYITHRAKLANLVLRFRGSLNKELGYFQLLGNATPTHGPHALS
AKALEVLMPEAIAIPPLTLVLAKRFDLKVKVATSIRHQDLKSPRKHRRHARLIAETII
GDCVMGLTLARNEEVTRSLGKHKMLGYHPERRFDILQLWTESLITTHSYCENHLIIPR
DTPWLGGYS"
misc_feature complement(<149969..150235)
/locus_tag="DSY0142"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:223539"
misc_feature complement(149759..150229)
/locus_tag="DSY0142"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:245596"
gene 150382..151215
/locus_tag="DSY0143"
/db_xref="GeneID:3953150"
CDS 150382..151215
/locus_tag="DSY0143"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516376.1"
/db_xref="GI:89892889"
/db_xref="GeneID:3953150"
/translation="MLKVGDIVARKSHKQDLFFRIEQIMSIKGERIAILKGINLRLIA
DAPLQDLVEKEPSEVAHYQREDYQDIYNKLKIVVNQRKYVPEVQDEFYEIPGRVLHLD
GDEEYLSQCIKTYQQLGLDAKGICISEAEQPKKIRQVLQENPTDIVVLTGHDGFLKGK
KDFKSLDSYRSSRFFVQSVLEARRFQPNRDALVIFAGACQSNYEAIIRAGANFASSPK
RTLIHAFDPVFIVERIAFTPIDQMVSLKEIIQHTVTGTDGLGGIETRGQLRKGYPRSP
Y"
misc_feature 150385..151212
/locus_tag="DSY0143"
/note="YabG peptidase U57; Region: Peptidase_U57;
pfam05582"
/db_xref="CDD:147641"
gene complement(151269..151616)
/locus_tag="DSY0144"
/db_xref="GeneID:3953151"
CDS complement(151269..151616)
/locus_tag="DSY0144"
/note="similarity to COG1376 Uncharacterized BCR(Evalue:
5E-21)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516377.1"
/db_xref="GI:89892890"
/db_xref="GeneID:3953151"
/translation="MNPLPQRRIIIRRSSRQIELYDGNQLLACYPCAVGKSSTPTPLG
NYAVATKVMNPGGAFGTRWLGLSLPDYGIHGTNKPASIGTQASLGCIRMHNHHVEALY
DQVGAGTPVIITE"
misc_feature complement(151278..151562)
/locus_tag="DSY0144"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:217702"
misc_feature complement(151272..>151526)
/locus_tag="DSY0144"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: ErfK; COG1376"
/db_xref="CDD:224294"
gene 151736..152578
/locus_tag="DSY0145"
/db_xref="GeneID:3953152"
CDS 151736..152578
/locus_tag="DSY0145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516378.1"
/db_xref="GI:89892891"
/db_xref="GeneID:3953152"
/translation="MIKGRNDMNHYVEGKLLIIGGAEDKKGECKILKRFIQEAGGRES
RVVVLTAATEMPEQVGSEYKELFENLGAAEVQVLDIAERVSANRESISQELQKATGIF
FTGGDQLRITGILGGTRLGRTLHNLYQRGVIIAGTSAGASVMSDTMIVGGEAGTPKKD
TLTMAPGLGLLHSVVVDQHFAQRGRIGRLLTAIAQNPYVLGVGIDEDTSILVYSDGHF
TVVGSQTVTVVDASPTMASNVSEISPGQALVLTPVLMHILSDGYRFDLKRRAASLNET
PSGG"
misc_feature 151778..152425
/locus_tag="DSY0145"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in cyanophycinase; Region:
GAT1_cyanophycinase; cd03145"
/db_xref="CDD:153239"
misc_feature order(152147..152149,152270..152272,152351..152353)
/locus_tag="DSY0145"
/note="proposed catalytic triad [active]"
/db_xref="CDD:153239"
misc_feature 152147..152149
/locus_tag="DSY0145"
/note="active site nucleophile [active]"
/db_xref="CDD:153239"
gene 152698..155355
/locus_tag="DSY0146"
/db_xref="GeneID:3953153"
CDS 152698..155355
/locus_tag="DSY0146"
/note="catalyze the formation of cyanophycin which may act
to store excess nitrogen"
/codon_start=1
/transl_table=11
/product="cyanophycin synthetase"
/protein_id="YP_516379.1"
/db_xref="GI:89892892"
/db_xref="GeneID:3953153"
/translation="MEILKIQAIPGANVYSYRPVIRAVVDLQEWTERTSDTFGDFNTR
LVQCLPSLYEHFCSRGKPGGFVERLKEGTLVGHIIEHVTIELLTRAGQNIPYGKTLCL
PEHPGHYEIIFNYDSLEGGLEGFKQGYALVQELLAGQKPNVTNRIERIREVIQRFELG
ASTRAIIEAAEGRGIPVIRLNDSSLLQLGYGRNQKRVQAAMSDQTSCIGVDIACDKGL
TKKLLYEGGIPVPDGVVTRNEDEAVEVFRQLDRLVVVKPYNGNQGKGVTLKLGTEAEV
RAAFRVAQTYEEQVVVEEYIEGKNYRLLVVDGKMAAAAERIPAHVIGDGVSTVGELVQ
LANSDPQRGEDHEKALTKIKIDPVVLMTLTQKKIALETVPADGEVVYLRDSANLSTGG
ISVDVTERVHPDNAALAEYAARIVGLDIAGVDMVLEDIERPHQEQRGAIIEVNAAPGL
RMHQYPTVGRPLDVGKIIVDHVMPKGNGRIPVISVTGTNGKTTTTRMIGKMLMDRELA
VGMTTTDGIYVGGKLLLKGDTTGPESAQIVLRHPDVQVAVLETARGGILRAGLAYDYA
DVAVVTNVANDHLGQYGMESLEDIAHVKSLIAEVVRPHSYVVLNADDPLVASFARKTK
GKVIFFSTEKDNLTIRKHLAVGGIAVFVRRGNILLCQGDQSHKICGVKDLPVTWNGKA
LHNLQNALAAIAVGWSLGLKAEGIRISLSEFTSDPECNRGRLNPYTIGGVQVFIDYGH
NAAGIKAIAQTLRKFKAPAVVGCVTVPGDRPDETIREVARVAARGFHRLIIREDGDLR
GRRPGEIAGMIMEEAIASGMDPRRISVVLPEREAFCHGLDTCKPGEIFVMFYEHLEPI
EEEIALRLESGPLAKEEEGFLEVANLGAI"
misc_feature 152698..154878
/locus_tag="DSY0146"
/note="cyanophycin synthetase; Provisional; Region:
PRK14016"
/db_xref="CDD:237586"
misc_feature 153334..>153624
/locus_tag="DSY0146"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl17255"
/db_xref="CDD:247809"
misc_feature 154183..154677
/locus_tag="DSY0146"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature 154858..155115
/locus_tag="DSY0146"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene 155583..156497
/locus_tag="DSY0147"
/db_xref="GeneID:3953154"
CDS 155583..156497
/locus_tag="DSY0147"
/note="similarity to COG3177 Uncharacterized BCR(Evalue:
3E-34)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516380.1"
/db_xref="GI:89892893"
/db_xref="GeneID:3953154"
/translation="MGYISVQQAAEQWGLSDRRVRLLCEQGKIEGVIREGRSYRIPAD
SVKPLDGRILRGKIIPQEYTTLFARVDALKSQISKRRPFTQGELKRLQEKFLVEFTYN
SNAIEGNTLTLRETALVLEGVTIDQKPLKDHLEAVGHRDAFLYIQRLVTEKAPVSERI
IKDIHSLVLMDRPDDKGVYRRIPVTIMGTYHEPSQPYRIPVQMEQLIAAQKEEKRHPL
ENAAVFHLKFEGIHPFIDGNGRTGRLLLNLMLMQQGYPPIDVKFADRKRYYACFDSYY
KDKTAAPMVEMVAGYLEERLKRYLDILL"
misc_feature 155589..155720
/locus_tag="DSY0147"
/note="Helix-turn-helix domain; Region: HTH_17; pfam12728"
/db_xref="CDD:205047"
misc_feature 155805..>156461
/locus_tag="DSY0147"
/note="Fic family protein [Function unknown]; Region:
COG3177"
/db_xref="CDD:225718"
misc_feature 156045..156290
/locus_tag="DSY0147"
/note="Fic/DOC family; Region: Fic; pfam02661"
/db_xref="CDD:217170"
gene 156698..157570
/locus_tag="DSY0148"
/db_xref="GeneID:3953155"
CDS 156698..157570
/locus_tag="DSY0148"
/note="similarity to COG1947
4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate
synthase(Evalue: 2E-48)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516381.1"
/db_xref="GI:89892894"
/db_xref="GeneID:3953155"
/translation="MIRNQVEMFAYAKINLALAITGRRPDGYHELESVMQSIGIYDRI
RVTLAEGGIQCSCGEWSGPENLAYRAAEAFLSGLGSSQGIHIDIEKNIPVQAGLGGGS
ADAAAALQALNKLFKEPYTEEELKSFAAQLGADVAFCLKGGTQWATGVGEELKGLPHA
PKINLVLIKPDQGVNTAEAYRAFDQEGKFSHLDYAGWQEALASGRAESLIPLLYNDLE
PASMKLLPEIAWVKEELMKQNGCLGALMSGSGSAVFGIVQTEEQAEKIAAIWRERNYH
VWVTHTMERGNIYG"
misc_feature 156725..157558
/locus_tag="DSY0148"
/note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional; Region: ipk; PRK00128"
/db_xref="CDD:234652"
misc_feature 157292..157525
/locus_tag="DSY0148"
/note="GHMP kinases C terminal; Region: GHMP_kinases_C;
pfam08544"
/db_xref="CDD:219894"
gene 157563..158282
/locus_tag="DSY0149"
/db_xref="GeneID:3953156"
CDS 157563..158282
/locus_tag="DSY0149"
/note="similarity to COG1802 Transcriptional
regulators(Evalue: 3E-28)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516382.1"
/db_xref="GI:89892895"
/db_xref="GeneID:3953156"
/translation="MGRKLVPVKLDSYKPLREIVFESLREAIINGVLEPGERLMEIQL
AEEMGVSRTPVREAIRKLELENFVVMIPRKGAYVAGVSHKDVADVFEIRSALEGLAAG
LAAERATDQEIEEMERFLLYYEGQEMSLDQMVDSDTGFHALVYKASRNERLIQILANL
REQIQRFRATSLSVPGRLKNAIDEHRSIVEALARHDVEEAQTLAMAHIVTAENVMFEA
LRLSKEQGDSKEDSEANSEKE"
misc_feature 157587..158222
/locus_tag="DSY0149"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:224715"
misc_feature 157605..157799
/locus_tag="DSY0149"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(157605..157607,157611..157613,157680..157682,
157683..157688,157710..157724,157728..157733,
157740..157742,157770..157775,157779..157790)
/locus_tag="DSY0149"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 157824..158186
/locus_tag="DSY0149"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:219539"
gene 158294..159130
/locus_tag="DSY0150"
/db_xref="GeneID:3953157"
CDS 158294..159130
/locus_tag="DSY0150"
/note="similarity to COG0503 Adenine/guanine
phosphoribosyltransferases and related PRPP-binding
proteins(Evalue: 2E-69)"
/codon_start=1
/transl_table=11
/product="pur operon repressor"
/protein_id="YP_516383.1"
/db_xref="GI:89892896"
/db_xref="GeneID:3953157"
/translation="MEKMKRAERMVAVMQVLMSKPNMLIPLTTLAERFGAAKSTISED
LLAVKESMRCTGQGRLETVSGAAGGVRYIPEISAEDAGGFLISLAERLSSQDRVLAGG
FLYMTDLLYDPAVLRPLALIFAGVFREKKPDVVVTIETKGIPLALVTAEALGVPMVII
RHGNKVTEGTAVSINYVSGSSKRIQSMTLGRRALEPGRKVLIIDDFMKAGGTALGMIN
LLKEFDADVVGLGVLMETPREEEPKLVDHYLSLLQLRELDPVKGVVQVIPQNSFLHYQ
KL"
misc_feature 158297..159109
/locus_tag="DSY0150"
/note="pur operon repressor; Provisional; Region:
PRK09213"
/db_xref="CDD:236414"
misc_feature 158306..158515
/locus_tag="DSY0150"
/note="Bacterial purine repressor, N-terminal; Region:
PuR_N; pfam09182"
/db_xref="CDD:150015"
misc_feature 158648..159040
/locus_tag="DSY0150"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(158708..158710,158714..158716,158903..158911,
158915..158929,158999..159001)
/locus_tag="DSY0150"
/note="active site"
/db_xref="CDD:206754"
gene 159378..159632
/locus_tag="DSY0151"
/db_xref="GeneID:3953158"
CDS 159378..159632
/locus_tag="DSY0151"
/note="similarity to COG2088 Uncharacterized protein,
involved in the regulation of septum location(Evalue:
3E-29)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516384.1"
/db_xref="GI:89892897"
/db_xref="GeneID:3953158"
/translation="MNITDVRVRKVNVEGKMKAVVSVTFDNSFVVHDVKVVEGTNGLF
VAMPSRKTPEGEFRDIAHPISSAAREVIQNAVLKAYQEAM"
misc_feature 159378..159626
/locus_tag="DSY0151"
/note="regulatory protein SpoVG; Reviewed; Region:
PRK13259"
/db_xref="CDD:237321"
gene 159820..161181
/gene="glmU"
/locus_tag="DSY0152"
/db_xref="GeneID:3953159"
CDS 159820..161181
/gene="glmU"
/locus_tag="DSY0152"
/note="forms a homotrimer; catalyzes the acetylation of
glucosamine-1-phosphate and uridylation of
N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc;
function in cell wall synthesis"
/codon_start=1
/transl_table=11
/product="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase"
/protein_id="YP_516385.1"
/db_xref="GI:89892898"
/db_xref="GeneID:3953159"
/translation="MPHWAAVIMAAGKGTRMKSKLPKVMHTLAGKPMLQHVLDCVRSV
EIPRSMVVLGHGREQIEATLDDRTEVVVQEEQCGTGHAIMQAIPHCHEVDHIIVLSGD
QPLIRPETLRNLIRIHIEHNAAATLLTACFENPHGLGRILKEGDQFLRVVEEKDATPE
ERLVQEINTGTYCFNVAKLREALKNITPKNAQGEYYLTDVFAVFHAQGEVIRTYCTED
VHEALGINSRAQLAAAEDVARQRILSYWMEEGVTIIDPRSTFIEAGVVLQPDVVLQPF
TILKGRTQVAEDAVIGPHTTLTDCTVGAGSEVSHTVGNQAVIGGHCTIGPYAYLRPGT
VLQDKVKVGDFVEIKNSQIGEGSKIPHLSYVGDSQVGKSVNIGAGTITCNYDGVNKYK
TIIRDKAFLGSNTNLVAPVEIGEGSVTGAGSTISKNVPANTLAIERSTQKHIENWVRN
KKK"
misc_feature 159826..161178
/gene="glmU"
/locus_tag="DSY0152"
/note="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional; Region: glmU; PRK14354"
/db_xref="CDD:184643"
misc_feature 159835..160512
/gene="glmU"
/locus_tag="DSY0152"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature order(159844..159852,159973..159975,160054..160056,
160063..160065,160117..160119,160123..160125)
/gene="glmU"
/locus_tag="DSY0152"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature order(160123..160125,160495..160497)
/gene="glmU"
/locus_tag="DSY0152"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
misc_feature 160567..161142
/gene="glmU"
/locus_tag="DSY0152"
/note="N-acetyl-glucosamine-1-phosphate uridyltransferase
(GlmU), C-terminal left-handed beta-helix (LbH)
acetyltransferase domain: GlmU is also known as
UDP-N-acetylglucosamine pyrophosphorylase. It is a
bifunctional bacterial enzyme that catalyzes two...;
Region: LbH_GlmU_C; cd03353"
/db_xref="CDD:100044"
misc_feature order(160810..160812,160858..160860,160864..160866,
160900..160902,160909..160911,160942..160953,
160966..160974,160987..160989,161017..161019,
161023..161028,161077..161082,161131..161133)
/gene="glmU"
/locus_tag="DSY0152"
/note="active site"
/db_xref="CDD:100044"
misc_feature order(160810..160812,160858..160860,160864..160866,
160900..160902,160909..160911,160942..160950,
160969..160971,160987..160989)
/gene="glmU"
/locus_tag="DSY0152"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100044"
misc_feature order(160951..160953,160966..160968,160972..160974,
161023..161028,161077..161082,161131..161133)
/gene="glmU"
/locus_tag="DSY0152"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100044"
gene 161196..162137
/locus_tag="DSY0153"
/db_xref="GeneID:3953160"
CDS 161196..162137
/locus_tag="DSY0153"
/note="similarity to COG0462 Phosphoribosylpyrophosphate
synthetase(Evalue: 1E-117)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516386.1"
/db_xref="GI:89892899"
/db_xref="GeneID:3953160"
/translation="MSVKELKIFCGNANRALAEEIVDYLGVPLGEAKVKRFKDGEITI
AIDESVRGADVFVVQPTCNPTNDNIMELLIMIDALKRASARRITPVIPYYGYARQERK
SKARDPITAKLMANLITTAGADRVVTMDLHAPAIQGFFDIPVDHLPGVPILAEYFKSK
ELENVVVVSPDHGGVQRARNLAERIGAPLAIIDKRRPEPNVSEIMNVIGDIQGKQVIM
IDDIIDTAGTITQGAQALKDRGAQDVYACCTHPVLSGPAFERLENSVIKEVVITNTIP
VHPEKMISKIKVLSVAPLLGAAIVRIHEDLSVSKLFS"
misc_feature 161211..162131
/locus_tag="DSY0153"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:234929"
misc_feature 161211..161561
/locus_tag="DSY0153"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:222383"
misc_feature 161643..162017
/locus_tag="DSY0153"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(161706..161708,161712..161714,161853..161861,
161865..161879,161949..161951)
/locus_tag="DSY0153"
/note="active site"
/db_xref="CDD:206754"
gene complement(162300..164159)
/locus_tag="DSY0154"
/db_xref="GeneID:3953161"
CDS complement(162300..164159)
/locus_tag="DSY0154"
/note="similarity to COG2217 Cation transport
ATPases(Evalue: 1E-101)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516387.1"
/db_xref="GI:89892900"
/db_xref="GeneID:3953161"
/translation="MLTFFKNEEKRTILFLVLSLPALIMSFFEIGSFPVDPAWIAILL
CGIPIIKGAIVGLVTEFDIKADVLVSLALIAAIFIGEIFAAGEVAFIMAIGAYLEERT
VAKARAGIEKLVHLTPTTARLVNNGEERIVPAEQVKVGDVLRVLAGETIAVDGIIISG
QTSVNQAVMTGESLPVDKSTGEKISSGTVNQFGTFDMQATKVGEDSSLQRMIRLVQSA
DAGKAKIVGIADRWATWIVVIALFSAGATWFITDEIIRAVTILVVFCPCALVLATPTA
IMAGIGNATKFGILVREGDALERLSMVKRMAFDKTGTLTFGKPDVAAVESFDPSLSAD
ELLALAASAELRSEHPLGKAVVAHYRTAAKASLPEPHDFRMLAGRGVYAVVNNRTIYA
GNGELLQDNGIPLAQAIIEKAASYRNDGCTIIFVAIDGHASGFIALSDTLRPDAVDIV
RNLEKLNVTSVLLTGDNHHAASHMAKIAGIHDIHTDCLPENKLAVIEQYQSKGDLVCM
VGDGVNDAPALKKAHVGIAMGGIGSDIAVDAADIALVRDDIKNIPHLFALSKRTMNTI
KINMALSMALNFGAILLAMFGHLGPVVGALVHNVGSVVVIINSSLLLNWRKSK"
misc_feature complement(162387..163964)
/locus_tag="DSY0154"
/note="heavy metal translocating P-type ATPase; Region:
ATPase-IB_hvy; TIGR01525"
/db_xref="CDD:233447"
misc_feature complement(163263..163898)
/locus_tag="DSY0154"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:215733"
misc_feature complement(<162582..162872)
/locus_tag="DSY0154"
/note="Soluble P-type ATPase [General function prediction
only]; Region: COG4087"
/db_xref="CDD:226572"
gene 164365..164577
/locus_tag="DSY0155"
/db_xref="GeneID:3953162"
CDS 164365..164577
/locus_tag="DSY0155"
/note="similarity to COG1476 Predicted transcriptional
regulators"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516388.1"
/db_xref="GI:89892901"
/db_xref="GeneID:3953162"
/translation="MKNRLEEIRKQRGIRQEELAAALAVSRQTIGSLENGRYNPSIIL
AFKIARFFGMSIEEIFIYEEEEYDEK"
misc_feature 164371..164529
/locus_tag="DSY0155"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature order(164380..164382,164392..164394,164467..164469)
/locus_tag="DSY0155"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(164389..164391,164464..164466)
/locus_tag="DSY0155"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature order(164410..164415,164446..164448,164455..164457,
164467..164472)
/locus_tag="DSY0155"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 164624..165004
/locus_tag="DSY0156"
/db_xref="GeneID:3953163"
CDS 164624..165004
/locus_tag="DSY0156"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516389.1"
/db_xref="GI:89892902"
/db_xref="GeneID:3953163"
/translation="MAVGLGLIKWQGDAEGMLRTLPYICVGVGAGVFGSNLGTAIKLR
QFKKHPETARQVEIEEKDERNIAISNQAKAKAYDLMLVLYSALLLGFALMQVALQVIL
ALVGAYLLVVFTMVYYLAKYQKEM"
gene 165008..165625
/locus_tag="DSY0157"
/db_xref="GeneID:3953164"
CDS 165008..165625
/locus_tag="DSY0157"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516390.1"
/db_xref="GI:89892903"
/db_xref="GeneID:3953164"
/translation="MVGMLERTIAGLQRNNMAGYFVHNRQELMALLSGLMEKGQTVGC
GDSVTLEELGVFDFLRKGDYIFYDKYVPGLTSEDKRRLYIQNFAADTFITGTNAVTTD
GKLFNIDGNGSRVAPMIYGPRQVIVVVGTNKITEDVESAIQRVRQIAAPMDAKRLKKE
TPCTKLNRCVDCRHPQRICNDFVLITGQFVKDRIKVIIIDMEIGY"
misc_feature 165020..165604
/locus_tag="DSY0157"
/note="Uncharacterized ACR, YkgG family COG1556; Region:
DUF162; pfam02589"
/db_xref="CDD:217126"
gene 165962..166204
/locus_tag="DSY0158"
/db_xref="GeneID:3953655"
CDS 165962..166204
/locus_tag="DSY0158"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516391.1"
/db_xref="GI:89892904"
/db_xref="GeneID:3953655"
/translation="MESFRLLFNLERGFKMNYAAIANLVHECVKNPTCLVTQKEKSGE
SKIKPDEFSVIQNVFSRHEVSGNGAAIGVLPMGFWS"
gene 166208..167167
/locus_tag="DSY0159"
/db_xref="GeneID:3953656"
CDS 166208..167167
/locus_tag="DSY0159"
/note="similarity to COG0142 Geranylgeranyl pyrophosphate
synthase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516392.1"
/db_xref="GI:89892905"
/db_xref="GeneID:3953656"
/translation="MMNLQLDQIFFREIDSVLAKARLDAEMERLIRLSLNADSPTGEL
FRWAHLTRMSCECAGGDPEDALPGAIGMEFFALALDIFDDVQDQDNENMPWRQLPDAQ
AINLAICLLMLSDEAISAIPDNRLFREVAATLHRTGICASNGQFREFIYDDRQQVSFE
QYFEMAGQKAGSLTACACKIGAILGGAEEPVIHGLEQFGINLGILNQIRNDLNDFLDF
FRKSDFVNNKKTLPYVYLLNTLKAEAAERFKELTQGHGEGAYGFGDREREYVRQLAAE
EGVAPYCTVMFEIYCQKAREILEGIPVPEKNKENMKELVGESV"
misc_feature 166208..167152
/locus_tag="DSY0159"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:223220"
misc_feature 166355..167029
/locus_tag="DSY0159"
/note="Isoprenoid Biosynthesis enzymes, Class 1; Region:
Isoprenoid_Biosyn_C1; cl00210"
/db_xref="CDD:241688"
misc_feature order(166433..166435,166442..166447,166454..166456,
166466..166468,166727..166729,166823..166828,
166835..166837,166856..166858,166868..166870)
/locus_tag="DSY0159"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173830"
misc_feature order(166454..166459,166466..166468,166835..166840,
166856..166858,166868..166870)
/locus_tag="DSY0159"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173830"
misc_feature 166454..166468
/locus_tag="DSY0159"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173830"
misc_feature order(166835..166843,166853..166870)
/locus_tag="DSY0159"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173830"
gene 167148..169505
/locus_tag="DSY0160"
/db_xref="GeneID:3953657"
CDS 167148..169505
/locus_tag="DSY0160"
/note="similarity to COG0642 Signal transduction histidine
kinase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516393.1"
/db_xref="GI:89892906"
/db_xref="GeneID:3953657"
/translation="MLEKVFKRQIYYIASLVFVVLGLGYFAACLTQPFIGLDLKNSNG
QWLVATSDPNGEGYRSGIRVGDEILKINGEDAGKYRFAQKWETAEGASTIEFRSPGEL
TDQTVTITPQPVLLTVLSEIPLLILGLVFWCLGFMTWYKRPFLEQARILFWMNWAFGL
AIVLAHASSRCLLLSKEMEHITFSLAPVFLIIFISVFPVSNQNKLNKFGRKIATILFI
LILVLTILQSLGFVQLISLIKKLSLSNMVIGILFTLWNLGILIKLPKNQPGKNEAYII
LLGMGIGFLPFVLLSALPIIFNLEQLIYSQVSSLSISAIPISLYYVIINKYLPDSRRL
YATALSYIGAAAILSFIVFLALFFLQVLPAIRLEYYTALLLFTLLSILCFHLIQIGIT
RLWERSSFFQDKHTLKQKVAVLNENLTSLVAEERILDEIVNTLGIDGIFMIMENEQIG
CLKKTAGRFKEHPRELETLENYFYHNQRLDLEAKMLPDDCPAGIYVPFIAQDSTCGIF
FGRRSSRIKFEQSELPFFTLLAGQLEYQIIMSLVIGKLTKEINALTKSSGRSYRRKME
LQGITNALFRKVEQKRKRLTDEICAGPLQWSMDLSRWLKYLKKECPADNKTLKVIAYL
QERAEDLNYELNCIANDWGPPILTDLGLVPAVQWLCQEIMTEELSLISLEISRLGQQS
RFKEDVEVTAYRFLQEGIMNSVRHSRSNMQTVRMTLNETWLELTVSDSGRGFDTGQIE
NWLLTGTHFGLVEMKERIEGLGGELQIISGINRGTTLKALIPVFS"
misc_feature 167250..>167381
/locus_tag="DSY0160"
/note="PDZ domain, also called DHR (Dlg homologous region)
or GLGF (after a conserved sequence motif). Many PDZ
domains bind C-terminal polypeptides, though binding to
internal (non-C-terminal) polypeptides and even to lipids
has been demonstrated; Region: PDZ; cl00117"
/db_xref="CDD:241622"
misc_feature order(167250..167258,167262..167264)
/locus_tag="DSY0160"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:238080"
misc_feature <168717..169496
/locus_tag="DSY0160"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4585"
/db_xref="CDD:226951"
misc_feature 169224..169475
/locus_tag="DSY0160"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(169239..169241,169251..169253,169260..169262,
169326..169328,169332..169334,169338..169340,
169344..169349,169389..169400,169446..169448,
169452..169454,169467..169472)
/locus_tag="DSY0160"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 169251..169253
/locus_tag="DSY0160"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(169338..169340,169344..169346,169389..169391,
169395..169397)
/locus_tag="DSY0160"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 169559..170245
/locus_tag="DSY0161"
/db_xref="GeneID:3953658"
CDS 169559..170245
/locus_tag="DSY0161"
/note="similarity to COG2197 Response regulator containing
a CheY-like receiver domain and an HTH DNA-binding
domain(Evalue: 1E-22)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516394.1"
/db_xref="GI:89892907"
/db_xref="GeneID:3953658"
/translation="MSVHWEKSQETAEQIHMLIVDSHRPFAEGTRALLSFEPRIVTIG
IAGDEDSCLNFLRHSVPDVVLLDFYLRDISGLDLMDKIKAAHPALKVILMVEQSQEGY
VLAASRKGAEGLLLKTCAVEEMIQAVLSVSKGGVYYSPSPLAFSQVEIDFHDLHFPAK
PAEVLKRLLTPREKEIMSLLTKPLHNREIAAALGITARAAHLQVKIILLKFGIKTRLE
AVLSWAYVDE"
misc_feature 169601..170218
/locus_tag="DSY0161"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:225107"
misc_feature 169610..169951
/locus_tag="DSY0161"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(169619..169624,169757..169759,169781..169783,
169841..169843,169898..169900,169907..169912)
/locus_tag="DSY0161"
/note="active site"
/db_xref="CDD:238088"
misc_feature 169757..169759
/locus_tag="DSY0161"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(169766..169771,169775..169783)
/locus_tag="DSY0161"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 169907..169915
/locus_tag="DSY0161"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 170054..170218
/locus_tag="DSY0161"
/note="helix_turn_helix, Lux Regulon; Region: HTH_LUXR;
smart00421"
/db_xref="CDD:197715"
misc_feature order(170066..170074,170111..170119,170141..170146,
170150..170155,170159..170173,170204..170206)
/locus_tag="DSY0161"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(170099..170101,170105..170107,170111..170113,
170204..170212)
/locus_tag="DSY0161"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene complement(170369..170644)
/locus_tag="DSY0162"
/db_xref="GeneID:3953659"
CDS complement(170369..170644)
/locus_tag="DSY0162"
/note="similarity to COG1937 Uncharacterized BCR"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516395.1"
/db_xref="GI:89892908"
/db_xref="GeneID:3953659"
/translation="MRQCMDFDNLHRRLNKVIGQIKAIDKMLEEDIPCEDILIQINAA
KKALHKVGQVVLEGHLNHCVREGIEHGDADKTINDFAKAVEHFSRLT"
misc_feature complement(170375..170629)
/locus_tag="DSY0162"
/note="Uncharacterized family 3; belongs to a superfamily
containing the transcriptional regulators CsoR
(copper-sensitive operon repressor), RcnR, and FrmR, and
related domains; this family was previously known as part
of DUF156; Region: CsoR-like_DUF156_3; cd10160"
/db_xref="CDD:197395"
misc_feature complement(order(170390..170419,170423..170428,
170453..170455,170462..170470,170474..170482,
170486..170491,170498..170503,170510..170515,
170519..170524,170528..170536,170540..170548,
170552..170563,170570..170575,170579..170584,
170591..170593,170600..170605,170612..170617,
170624..170626))
/locus_tag="DSY0162"
/note="putative homotetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:197395"
misc_feature complement(order(170390..170401,170408..170410,
170468..170470,170480..170482,170489..170491,
170498..170503,170510..170515,170519..170524,
170528..170536,170540..170548,170552..170563,
170570..170575,170579..170584,170591..170593,
170600..170605,170612..170617,170624..170626))
/locus_tag="DSY0162"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:197395"
misc_feature complement(order(170456..170458,170468..170470,
170543..170545))
/locus_tag="DSY0162"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197395"
misc_feature complement(order(170402..170407,170411..170419,
170423..170428,170453..170458,170462..170467,
170474..170479,170486..170488))
/locus_tag="DSY0162"
/note="putative homodimer-homodimer interface [polypeptide
binding]; other site"
/db_xref="CDD:197395"
gene 170933..171943
/locus_tag="DSY0163"
/db_xref="GeneID:3953660"
CDS 170933..171943
/locus_tag="DSY0163"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516396.1"
/db_xref="GI:89892909"
/db_xref="GeneID:3953660"
/translation="MRKEAGLELWRKLHEVTRLIGSLQPWDYLWDMDMITLVLPEYEQ
PFFVSVMGRNGECYAITVMEGPEALRGFYRLAESREIPPGQLIRYQNNLTCYFGDRDE
LSKAERDRIKALGLKFRGRNQWIFFRAFERGYAPHTLDEEQVLKLTRVFQELFMALRA
LLEHGIAVDFEKGQTLYRCFDPEQKLWLTSAMPRFMPSPQYLVPVLEDEVMAARLKRQ
KKVKEKLEIDTLFLDTFIDESKSGRPTIPILLILASRSSGMILDQEFLDPGDDEVAAV
LGQVINYIEDSGRPQKIFVRDEEMAHLLSDLCRRVDIPIAIEGSLQVIDDFAENFELL
SF"
gene 172142..173293
/locus_tag="DSY0164"
/db_xref="GeneID:3953661"
CDS 172142..173293
/locus_tag="DSY0164"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516397.1"
/db_xref="GI:89892910"
/db_xref="GeneID:3953661"
/translation="MKLANLLSFGSETTDIQLNSLNVVVGPNGSGKSNLIDAISLLQA
SPSDLAVPIRKGGGIRDWLWRGMELPTASMEVITPSAPHGNKDLRYYLAFTALKQRFE
LIDECLETKEPYTNHSEPYFYYRYQNGNPVINNIKDQKRMLKREDIDPEQSILSQRKD
PDQYPEITWLGKQFAAIRIYREWNFGRKALLRQPQGADAPNDYLAEDCSNLGLVLNKL
RTNYKVKKKVLDLLSQFYEGIDDFDVIVEGGTVQLFLQEGEFMIPATRLSDGTLRFLC
LLAILCNPDPPPLICIEEPELGIHSDIIPVIGQLLKDASKMTQLIVTTHSEILVDELT
DMPEAVLVCEKHEGMTRFRRLEKDLLKDWLERYSLGELWRKGEIGGTRW"
misc_feature 172142..173248
/locus_tag="DSY0164"
/note="Predicted ATPase [General function prediction
only]; Region: COG4637"
/db_xref="CDD:226984"
misc_feature 172145..>172258
/locus_tag="DSY0164"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 172217..172240
/locus_tag="DSY0164"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(172226..172231,172235..172243)
/locus_tag="DSY0164"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
gene 173287..173916
/locus_tag="DSY0165"
/db_xref="GeneID:3953662"
CDS 173287..173916
/locus_tag="DSY0165"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516398.1"
/db_xref="GI:89892911"
/db_xref="GeneID:3953662"
/translation="MVRSIRNTVKIYIEGGGEQEHLKRECRKAFSSFFDKIGFRGRMP
RVVACGSRNEAFRDYCISLKTSQSTGELAFLLVDSEGPVDAAFCNRPGQYLRTHESWN
MPRNAQDEQIHLMIQCMESWFLADIDALREFFGNGFREGSLPRGSNIEDISKTDILDG
LKNASGSSYKGKYGKAAHSFKLLEKVDPQKVKIAFPSVNRLHEELDKVL"
misc_feature 173320..173910
/locus_tag="DSY0165"
/note="Domain of unknown function (DUF4276); Region:
DUF4276; pfam14103"
/db_xref="CDD:222542"
gene 174106..176832
/locus_tag="DSY0166"
/db_xref="GeneID:3953663"
CDS 174106..176832
/locus_tag="DSY0166"
/note="similarity to COG2909 ATP-dependent transcriptional
regulator(Evalue: 2E-26)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516399.1"
/db_xref="GI:89892912"
/db_xref="GeneID:3953663"
/translation="MRLRNIRPKATEALLQRPRLLDKIALPGTQLTYIHADAGYGKTT
LLLQYAKGRDDVVWMALDGKDREPIFFLQHLESSLKEKLIQFEFHATDYIPFAGSDTF
AAVVLSALLKAIGSSVLTIIFDDVHVITHHQLTDLLTEWVKSSPPNLTLIMASRHELW
SSLFRLKIAGEVVELTKRDLCFSQEEAERLWGFFDEAAYSATEGWTLAIQSYRLAAEG
NKEFSLARLDADRDVSRYLFNEIFMGITEETRDFLKATSRLPELEVQGCNYLLNIKHS
QKILEELMHRNLFILRTSTTSYRYHTLFRNFLQQNDEGRGWEILHKAKDSCYGSGDYG
RAAEYALLVEDEKIVHACLSAMAGEFFTKGSSRNLKRYFDFLEARHVELTPRVQLVKG
IYLSDGGDFYQAEKYLKVVMPQLKSDEQDLYILAMTHLARVKRNRASFPESTACLDSL
LPLLEGAPMAAWYGVVIEKIHNLTLTSQLTEALALTIAMMNKCLVNGDLRIKGWFERY
LTVVYFYKGDYKNCLQAYEKSLAIPQEEQDQLMRHGVGVYAAKAYQIAGQEDKARPLL
DAELYRMRQLGLHEEFSINYLLYAETLNTAEQLNYYLGKAADFSAADRYLNMAEDYAL
LNRSTREHWLFVKIWKDCAEIFKQPEKAEEITAGILTLIQDTTPFFQTVAYGRMANAL
QVHQKNREQSIEYYRKSIAIGEEIGCYAYATLAYGKLASIYLEEGDEEQARSYTQRFL
ELSCQYDHRYYIRFKPLFADVLKQAAEAGIMPDYTRELLDYGGYASVRVYINTLGTFY
IAPAHERKSPIKIRTQKARELLAYLLEHREGVSKERIFDDLWWDSEANVTSLFHTRRG
EIKRAFESAGAGNPILYERGVYRLEMAEISCDLDALRQAAADFARQPSFINA"
misc_feature 174109..>175494
/locus_tag="DSY0166"
/note="ATP-dependent transcriptional regulator
[Transcription]; Region: MalT; COG2909"
/db_xref="CDD:225461"
misc_feature 176125..176331
/locus_tag="DSY0166"
/note="Tetratricopeptide repeat; Region: TPR_12;
pfam13424"
/db_xref="CDD:205602"
misc_feature 176542..176745
/locus_tag="DSY0166"
/note="Transcriptional regulatory protein, C terminal;
Region: Trans_reg_C; smart00862"
/db_xref="CDD:214866"
gene 177208..177762
/locus_tag="DSY0167"
/db_xref="GeneID:3953664"
CDS 177208..177762
/locus_tag="DSY0167"
/note="similarity to COG1595 DNA-directed RNA polymerase
specialized sigma subunits, sigma24 homologs"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516400.1"
/db_xref="GI:89892913"
/db_xref="GeneID:3953664"
/translation="MEKRELIGLVQKDETSLTELYNVYFPRINNYVHYRVADYHDAED
LVSQILEKVFTKSHSYQENKAPFSVWLFRIARNTITDYYRSRKGVHNISLDGYTRDIV
AREPEPAEIVELNELQHHLLKAIASLSQREQEIIALKFWSDLSNREIARLVGISESNT
GVILFRAMRQLRLILASQGMCIYE"
misc_feature 177238..177723
/locus_tag="DSY0167"
/note="RNA polymerase sigma-70 factor, TIGR02952 family;
Region: Sig70_famx2"
/db_xref="CDD:131997"
misc_feature 177265..177468
/locus_tag="DSY0167"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature 177565..177723
/locus_tag="DSY0167"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(177592..177594,177622..177624,177640..177645,
177673..177675,177679..177684,177688..177696,
177700..177705,177709..177711)
/locus_tag="DSY0167"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 177755..178129
/locus_tag="DSY0168"
/db_xref="GeneID:3953665"
CDS 177755..178129
/locus_tag="DSY0168"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516401.1"
/db_xref="GI:89892914"
/db_xref="GeneID:3953665"
/translation="MNEKQQAEIYLAYLERLIAGEKDLGVVEEPEIRKLLFLAETMLT
HDLSSNSKLRDSLKEKILAQLGQVNPVGLREFSRDEELAEEDLEYVAAGFSQQLGWQK
CPRCGSRLGKSTGDRECPNCKL"
misc_feature <178055..>178120
/locus_tag="DSY0168"
/note="Putative transposase DNA-binding domain; Region:
OrfB_Zn_ribbon; pfam07282"
/db_xref="CDD:115907"
gene 178249..178491
/locus_tag="DSY0169"
/db_xref="GeneID:3953666"
CDS 178249..178491
/locus_tag="DSY0169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516402.1"
/db_xref="GI:89892915"
/db_xref="GeneID:3953666"
/translation="MSIESAKAFMEKMKTDQDFAKKVMAAKDAEERRALVKEDGFDFS
AAELKELGEEMSDSELDAVAGGSCLVDTCGMKELIW"
misc_feature 178255..178446
/locus_tag="DSY0169"
/note="nif11-like leader peptide domain; Region:
ocin_TIGR03798"
/db_xref="CDD:234358"
gene complement(178560..179957)
/locus_tag="DSY0170"
/db_xref="GeneID:3953667"
CDS complement(178560..179957)
/locus_tag="DSY0170"
/note="similarity to COG0641 Arylsulfatase regulator (Fe-S
oxidoreductase)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516403.1"
/db_xref="GI:89892916"
/db_xref="GeneID:3953667"
/translation="MSKKEVSPFHLFEYRGHPYLLNIEKMAAHSVSTELLPILHNIRE
PQTKLPADQEKILRSWDLISECQDNDAPVVQMEPVPITYLYLFLTQSCNLRCIYCYGD
GGEYGAGGSMDSATAKQAVDWLITWSGNMKKIHLGFFGGEPFINFPLMKATVDYAQSK
AQEAHKEVAFYVTTNATLLDDEKIAFIKEHQFSVQISFDGPREIQDAQRPYANGQGSY
DSVVPKIKKLLACVPEASGHGVLWGDTNPQLVKATLQDLGFTSLTLAPASSSLFTDES
EKKPSSRKTQAQLQALEQETAAWLHHLRSRDKDILHGLRASSGGYGIYPGMIALLHNR
RKYHFCGVGRKMAGVSVTGDIYPCHRFVGNDDYKLGHVGDENFNRDDYLQSPPALRAN
CASCFARYYCAGGCRHDNLSSSGSSHVPSEEICRLRRRELELAAVIVSNLSSDDQAFL
VNERIIAPKPCPLDF"
misc_feature complement(178563..179942)
/locus_tag="DSY0170"
/note="nif11-like peptide radical SAM maturase; Region:
rSAM_nif11; TIGR04064"
/db_xref="CDD:188579"
misc_feature complement(<179274..179702)
/locus_tag="DSY0170"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(179367..179369,179433..179441,
179532..179537,179547..179549,179658..179666,
179670..179672,179676..179678,179682..179684))
/locus_tag="DSY0170"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(178725..178940)
/locus_tag="DSY0170"
/note="radical SAM additional 4Fe4S-binding SPASM domain;
Region: rSAM_more_4Fe4S; TIGR04085"
/db_xref="CDD:234461"
gene 180201..181307
/locus_tag="DSY0171"
/db_xref="GeneID:3953668"
CDS 180201..181307
/locus_tag="DSY0171"
/note="similarity to COG0683 ABC-type branched-chain amino
acid transport systems, periplasmic component(Evalue:
3E-31)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516404.1"
/db_xref="GI:89892917"
/db_xref="GeneID:3953668"
/translation="MIFILGLSLWPLGCTQVNPSGEIFIGVAWPFASLDDLFAEGLEL
AVQEINEQGGVQGRRLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPT
ASIYDQAGLVMLSPASTSPDLTDHGYIHVFRNIPSDQEIARQLAIYLAEQGHERMVIY
YTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGMDGIFIAKT
ATGGGTEFLVDAKSVGIEVPLIAGNSWDALSLTEDIENIGMTAEGLLVGSFFNPQRPD
SRTQDFVEAFRREYGQPPTSYAAAGYDAVILLAEALEKSDLTHPATLAQGLRDLGSWE
GVMGMHRFDGRGDDIGDLVVLKKMKDGRFEYLGH"
misc_feature 180255..181295
/locus_tag="DSY0171"
/note="ABC-type branched-chain amino acid transport
systems, periplasmic component [Amino acid transport and
metabolism]; Region: LivK; COG0683"
/db_xref="CDD:223755"
misc_feature 180273..181241
/locus_tag="DSY0171"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:245225"
gene 181323..182261
/locus_tag="DSY0172"
/db_xref="GeneID:3953669"
CDS 181323..182261
/locus_tag="DSY0172"
/note="similarity to COG0845 Membrane-fusion protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516405.1"
/db_xref="GI:89892918"
/db_xref="GeneID:3953669"
/translation="MRQGLFRDVSLTRLSSPEQLDQRIQVTSPKAWLALLAIGLILMS
GVVWGLLGSIPTKIQGQGILLNNGGVFSLQHHAPGQISDIRVKVGQEVRQGDVIARIE
QPELVAQIKGLLGSQAAMDKDGQGGEPALAGIEEQIRQLRSELVYRTQVVSEVDGRIL
ELNISKGSIVKPGDTLATLEQYGDTVKLEAIVYVPAEQGGLLRPGMECQISPTTVNKE
EYGYLLGRVNTVAEYPATAQSMMQTLGNESLVTFLAGQGAPLLVKIDLVPDSATESGY
RWSSPLGPPMSFQSGTIITTEIITQREKPIHKVIPF"
misc_feature <181542..182255
/locus_tag="DSY0172"
/note="NHLM bacteriocin system secretion protein; Region:
NHLM_micro_HlyD; TIGR03794"
/db_xref="CDD:163506"
misc_feature 181554..181859
/locus_tag="DSY0172"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature order(181605..181607,181680..181682,181686..181688,
181722..181724,181782..181784)
/locus_tag="DSY0172"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature 181686..181688
/locus_tag="DSY0172"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene 182287..184470
/locus_tag="DSY0173"
/db_xref="GeneID:3953670"
CDS 182287..184470
/locus_tag="DSY0173"
/note="similarity to COG2274 ABC-type
bacteriocin/lantibiotic exporters, contain an N-terminal
double-glycine peptidase domain(Evalue: 1E-101)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516406.1"
/db_xref="GI:89892919"
/db_xref="GeneID:3953670"
/translation="MVKKKIVKVPTVLQMEAVECGAASLAMILAYYGKYITLEELRIA
CGVSRDGSKASNLLKAARNYGLEAKGYRKEPEALRRMPLPLVIHWNFSHFLVLEGFHK
GKAVLNDPAAGRRTVSEEEFNLAFTGIVLSFTPTTEFQKDSRKPGLSLALRRRLKGSE
QALIYIILLGLALVIPGLIIPVFSRVFVDDILLGGLHSWVWPLLLGMGITAMLRGVLT
WMQQYYLLRLETKIALATSGQFLWHIFRLPSEFFSQRAAGELTSRIQSNDKVAKLLSG
KLATTALNVLMIMFYFTLMLTYSWILALVGLAIAFINVGYLIAVSARRVDLNRRLLQD
EGKLIGSSMAGLQIIETLKATGSEANFFAQWSGYQAKLLNAEQELGVSSQFLSVFPSF
LTGINNALVLVIGGFLILDGQMTIGMLVAFQSLMSSFMTPVTGLVGLGAELQEMTGEM
NRLDDVLNYPLGRNQGDQGGQGGQEDLGGTAEPPAGQKLSGYVELRNITFGYSILEPP
LIEDFSLSLRPGSRVALVGGSGSGKSTIAKIIAGIHHPWSGEILFDGQPRSSFTKEVL
SNSLAMVDQEICMLQGTVKENITLWDGTISEFEMIRAARDACIHDEITARPGGYEQMV
EEGGKNYSGGQRQRLEIARALAQNPVILIMDEATSALDPITEKNVDEYIRYRGCTCII
VAHRLSTIRDCDEIIVLEKGKIIERGTHGSLYERAGTYAKLIATG"
misc_feature 182308..184461
/locus_tag="DSY0173"
/note="NHLM bacteriocin system ABC transporter,
peptidase/ATP-binding protein; Region: NHLM_micro_ABC1;
TIGR03796"
/db_xref="CDD:163508"
misc_feature 182311..182685
/locus_tag="DSY0173"
/note="A sub-family of peptidase family C39. Peptidase
family C39 mostly contains bacteriocin-processing
endopeptidases from bacteria. The cysteine peptidases in
family C39 cleave the 'double-glycine' leader peptides
from the precursors of various...; Region: Peptidase_C39D;
cd02420"
/db_xref="CDD:239101"
misc_feature order(182326..182328,182344..182346,182563..182565,
182611..182613)
/locus_tag="DSY0173"
/note="putative active site [active]"
/db_xref="CDD:239101"
misc_feature 182815..183585
/locus_tag="DSY0173"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature 183763..184455
/locus_tag="DSY0173"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 183865..183888
/locus_tag="DSY0173"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(183874..183879,183883..183891,184009..184011,
184249..184254,184339..184341)
/locus_tag="DSY0173"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 184000..184011
/locus_tag="DSY0173"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 184177..184206
/locus_tag="DSY0173"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 184237..184254
/locus_tag="DSY0173"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 184261..184272
/locus_tag="DSY0173"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 184327..184347
/locus_tag="DSY0173"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 184508..187303
/locus_tag="DSY0174"
/db_xref="GeneID:3953671"
CDS 184508..187303
/locus_tag="DSY0174"
/note="similarity to COG2274 ABC-type
bacteriocin/lantibiotic exporters, contain an N-terminal
double-glycine peptidase domain(Evalue: 2E-74)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516407.1"
/db_xref="GI:89892920"
/db_xref="GeneID:3953671"
/translation="MSEIDYGEFVKQAGMSIPLDGQEPLFLQEDGSVWLVEQGKVAVF
LATMENQLQAGAKIFLFEGRAGDWLFGITPEGSPHKKGLLVSGLPGSRLLRLDIRQLT
ELLRDRRETDGGAQRGLQGPAHGEKIYGAVGQWLHTLARISRHGDISREARVAPGLAF
SQDEVAATAEAVLSEYEYLTNDSLRARYHSQVLQGVSDLWDKKIAAEQKRLEEKGRSD
QRLMANAIARLAAITEEVETKVLADQTGDPLLDACRLVGRTMQIGIVAPPEVLGSSKV
MLLDEIARASRIRVREVSLHGNWYTQDSGPLLGYMKEDHRPIALIPATPASYCIHDYT
LGITRSVDSETAQEIDAFGFVFYRPLAERKITARDLLALGWGNSWRRDFLMILLMGVL
GGILGTATPLATGIIFNTIIPEGERGHLVQIAFFLGASALAAMIFQFVRSLAALRIEG
KMEGAIQAAIWDRLLSLPVPFFKQFPAGELAMRAMGISQIRKILSGVTLNTVLSSIFS
VFTLVLMFYYDRRLAAAATMLVAVELLIIGFLGYLQVHYERKILEVSNQIAGMMLQLI
GSITKFRVAGAEVRVFYRWAERFSEQRQFVFKKRILGNWLTTFHDVFPILAGMIIFYT
LIAGHSLLSPGEFIGFNAAFISFMMSMTSLTEALIGAYSVIPLYQRAKPILDTLPEYD
ETKIAPAPLRGSIAMDHISFRYKVDGPLVLKDVSCRIEEGDYVALVGTSGCGKSTLLR
ILLGFEKPETGKIYYDGQDLEKVDIRAIRKQLGVVLQNGQLMSGNIFTNIVGANPYLT
IDDAWAAVKMVGMEEDIQAMPMGMHTMISEGASTLSGGQRQRLMIARAIVNQPKILFF
DEATSALDNRTQAMVSQSLDRLKVTRIVIAHRLSTIINCSKIIVMDQGRIVESGTYDE
LMSKGGIFANLVHRQLT"
misc_feature 185243..187297
/locus_tag="DSY0174"
/note="NHLM bacteriocin system ABC transporter,
ATP-binding protein; Region: NHLM_micro_ABC2; TIGR03797"
/db_xref="CDD:234357"
misc_feature 185708..186460
/locus_tag="DSY0174"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature 186590..187282
/locus_tag="DSY0174"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 186692..186715
/locus_tag="DSY0174"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(186701..186706,186710..186718,186836..186838,
187076..187081,187166..187168)
/locus_tag="DSY0174"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 186827..186838
/locus_tag="DSY0174"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 187004..187033
/locus_tag="DSY0174"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 187064..187081
/locus_tag="DSY0174"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 187088..187099
/locus_tag="DSY0174"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 187154..187174
/locus_tag="DSY0174"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 187512..188501
/locus_tag="DSY0175"
/db_xref="GeneID:3953672"
CDS 187512..188501
/locus_tag="DSY0175"
/note="similarity to COG0789 Predicted transcriptional
regulators"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516408.1"
/db_xref="GI:89892921"
/db_xref="GeneID:3953672"
/translation="MTLQPISKVSKAYGVSTRTLRYYEQLGLLQSSKLPGYAYRAYDE
EALSRLRQILVLRKLRIPLKQIGVILETRDARLAIEVFEQSITGLQSEKQALETIEGI
LRSFVRELEKLLPEPLSPHVFEQEHVMELVQALSVKTLSQKEETSMEELNRASELLEH
LKDIRILYLPPMTVASCQSTGDNQEEVVGAAISTFIKESGLGESKPDFRRIGFNNPAS
EQSGGSLGYEAWVSIPGDMEVPAPLVKKQFLGGLYAAHMIAFGEFQEWGRLWQWVMDN
GEYDVDFSPRTDPADLGADPSLEEQLNAIHHLEDTSPFGTQLDLLVPIKPKQG"
misc_feature 187527..187811
/locus_tag="DSY0175"
/note="Helix-Turn-Helix DNA binding domain of MerR-like
transcription regulators; Region: HTH_MerR-like; cd00592"
/db_xref="CDD:133378"
misc_feature 187527..187724
/locus_tag="DSY0175"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature order(187527..187532,187572..187574,187623..187631)
/locus_tag="DSY0175"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133378"
misc_feature order(187665..187667,187674..187676,187686..187691,
187716..187718,187755..187757,187767..187769,
187785..187787,187797..187799,187806..187811)
/locus_tag="DSY0175"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133378"
misc_feature 187998..188486
/locus_tag="DSY0175"
/note="Bacterial transcription activator, effector binding
domain; Region: AraC_E_bind; smart00871"
/db_xref="CDD:214874"
gene 188779..189336
/locus_tag="DSY0176"
/db_xref="GeneID:3953673"
CDS 188779..189336
/locus_tag="DSY0176"
/note="similarity to COG0778 Nitroreductase(Evalue:
1E-26)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516409.1"
/db_xref="GI:89892922"
/db_xref="GeneID:3953673"
/translation="MVDEEKEAIPRLHSDMEAITAIAGRASVRKYADKTVEPQKLEVI
LRAGLSAPSAKNKRPFHFVVVEDKAVLGAWAAGNSNAKMLSHAPCCIVVCGDGNVEGT
RDFLVGGCAAATQNMLIAIHALGLGGVWCGVLRGKEWSRQVAADLYLPVKVEPLTVIA
LGYPTEQEKAPVPWDMKSHIHYERW"
misc_feature 188833..189333
/locus_tag="DSY0176"
/note="NAD(P)H:flavin oxidoreductase-like family 1. A
subfamily of the nitroreductase family containing
uncharacterized proteins that are similar to
nitroreductase. Nitroreductase catalyzes the reduction of
nitroaromatic compounds such as nitrotoluenes; Region:
NADPH_oxidoreductase_1; cd02150"
/db_xref="CDD:239063"
misc_feature order(188851..188853,188857..188859,188863..188865,
188941..188943,189172..189177)
/locus_tag="DSY0176"
/note="putative FMN binding site [chemical binding]; other
site"
/db_xref="CDD:239063"
gene complement(189720..190583)
/locus_tag="DSY0177"
/db_xref="GeneID:3953674"
CDS complement(189720..190583)
/locus_tag="DSY0177"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516410.1"
/db_xref="GI:89892923"
/db_xref="GeneID:3953674"
/translation="MHDSTDKRTPLVIAAEINAINQESRRMLLKSAIEVGRRLKEAKE
LLNHGEWMKWLKESVSYSKSTAANLMNLYEEYGHLLLNPSDNDSNFQTFGNLTYSQAL
LLLGIPEEERQEFAVQNDVANMTARQLNQAVKEQKTPAPVKEPPKTGTETGAEAGAGA
MAESQTQPQPQLPPQTQGDIQIKYVSRTVRPRRQSITKTEPAPATSSLVTSYEEKCTA
CCQTIANTFQELLTALGHLARLDPRTKEKCSRNADQLASYMVDRLKDWPPVAGTNMKG
VQTYSTCEWGG"
misc_feature complement(190176..190562)
/locus_tag="DSY0177"
/note="Protein of unknown function (DUF3102); Region:
DUF3102; pfam11300"
/db_xref="CDD:221066"
gene complement(190792..191697)
/locus_tag="DSY0178"
/db_xref="GeneID:3954059"
CDS complement(190792..191697)
/locus_tag="DSY0178"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516411.1"
/db_xref="GI:89892924"
/db_xref="GeneID:3954059"
/translation="MKPSKEFLSLPIVSLSEGQHIGYVKSLVIDAQAKALAALVIDPK
GFFRDQRIIPYAKVVSVGADAITIDKGAYVEKSASLPEILSLIKEKLTIIGTRVITQS
GKTLGVVEEYYVDPDTGKITQMEISGGKIEGFFSGKAILEADYVVTIGQDVIVAQKGC
ETSLMIADKGINDTFKSVLRSTSNLASGTGQAFGKIFSKKDKDKTKHAAKGKVKGKGK
GTAEDSASPIPIIEGENMAPLQDPPAAEDENILSSANNQPIEAVIIKDSSPEVPEISP
AEQPAETGPELSQVAEAPSTKEPLG"
misc_feature complement(191167..191697)
/locus_tag="DSY0178"
/note="PRC-barrel domain containing protein [General
function prediction only]; Region: COG3881"
/db_xref="CDD:226398"
misc_feature complement(191491..191682)
/locus_tag="DSY0178"
/note="PRC-barrel domain; Region: PRC; pfam05239"
/db_xref="CDD:218519"
misc_feature complement(191230..191421)
/locus_tag="DSY0178"
/note="Protein implicated in RNA metabolism, contains
PRC-barrel domain [General function prediction only];
Region: COG1873; cl17889"
/db_xref="CDD:248443"
gene 191763..192353
/locus_tag="DSY0179"
/db_xref="GeneID:3954060"
CDS 191763..192353
/locus_tag="DSY0179"
/EC_number="3.1.1.29"
/note="Enables the recycling of peptidyl-tRNAs produced at
termination of translation"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase"
/protein_id="YP_516412.1"
/db_xref="GI:89892925"
/db_xref="GeneID:3954060"
/translation="MSSICLEEWSFMKLIAGLGNPGGQYAETRHNAGFLLLDCLAEEL
KLDFRPKFQGLVAETMMGGEKVYLLKPQTFMNLSGRSIRELAQFYKIAPKDIMVVYDD
MDLPIGRLRLRSSGSAGGHNGIKSTIAELGTEDFWRLKVGIGRPTAGWDSARYVLASF
TKEELPVLEEILDKGIKAVTLWAKEGGDKAMNLYNR"
misc_feature 191802..192308
/locus_tag="DSY0179"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:238259"
misc_feature order(191820..191822,191850..191852,191982..191987,
192063..192065,192123..192125)
/locus_tag="DSY0179"
/note="putative active site [active]"
/db_xref="CDD:238259"
misc_feature 191850..191852
/locus_tag="DSY0179"
/note="catalytic residue [active]"
/db_xref="CDD:238259"
gene 192416..192991
/locus_tag="DSY0180"
/db_xref="GeneID:3954061"
CDS 192416..192991
/locus_tag="DSY0180"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516413.1"
/db_xref="GI:89892926"
/db_xref="GeneID:3954061"
/translation="MPLPQERGNFTYADYLSWPQHERWEIIDGVAYMQAAPSSVHQEI
LTGLLVQFHQYLAGKAGKVYPAPFCVRLIENDEKNDEEIIKVVEPDITVVCDKSKVDE
KGCCGVPDLIVEIISPTSTEMDKLVKFNKYEKAGVREYWIVEPEGRFVSVFVLREQKY
GRPEIYAENDKIKVAIFPDLLIDLKPVFEGI"
misc_feature 192479..192955
/locus_tag="DSY0180"
/note="Domain of unknown function (DUF820). This family
consists of hypothetical proteins that are greatly
expanded in cyanobacteria. The proteins are found
sporadically in other bacteria. They have been predicted
to belong to the PD-(D/E)xK superfamily of...; Region:
DUF820; cd06260"
/db_xref="CDD:99749"
misc_feature order(192536..192538,192683..192685,192755..192757,
192797..192799,192809..192811)
/locus_tag="DSY0180"
/note="putative active site [active]"
/db_xref="CDD:99749"
gene 193354..194232
/locus_tag="DSY0181"
/db_xref="GeneID:3954062"
CDS 193354..194232
/locus_tag="DSY0181"
/note="similarity to COG0226 ABC-type phosphate transport
system, periplasmic component(Evalue: 4E-28)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516414.1"
/db_xref="GI:89892927"
/db_xref="GeneID:3954062"
/translation="MSETAAHYGITHENYPRIDGLTSTQGIAMAINQAMYRYLENENL
PMEVSKTVPSYKRLIAGEVELILVPYPSAAVLALAQESGVELEFHPVAAEALIFITPA
ENPADNITGDQVRTIYLDYGIRSWSELGGSDKELIPICRNADSGSQSQLDNLVLHDQP
MHPGIQKNYVELTMEGMLELVAFYHHGGLDGKPTDSYALGYTLYTYLQNMNEVTEIGS
RLKILSFEGVEPTEENIAKGSYSLADGYYAVVRKDLPAAHSARGILKWLQSDEAAAAI
KARGFIPKQDRTKLSW"
misc_feature 193402..194166
/locus_tag="DSY0181"
/note="PBP superfamily domain; Region: PBP_like_2;
pfam12849"
/db_xref="CDD:221806"
gene 194510..194935
/locus_tag="DSY0182"
/db_xref="GeneID:3954063"
CDS 194510..194935
/locus_tag="DSY0182"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516415.1"
/db_xref="GI:89892928"
/db_xref="GeneID:3954063"
/translation="MRVLIDTNVILDAVIRRVPYNNPAERLFLLIAGDRLKAYITASS
VTDIYYLLHRHFRDADQAKQVLAKLFVLFEVLEVTQSDCERALSLAMDDYEDALLATC
AKRKKLDMIITRNLPYFKDSPVKAIAPDEFIAHYFDEEG"
misc_feature 194513..194857
/locus_tag="DSY0182"
/note="PIN domain; Region: PIN_3; pfam13470"
/db_xref="CDD:222154"
gene complement(195034..196260)
/locus_tag="DSY0183"
/db_xref="GeneID:3954064"
CDS complement(195034..196260)
/locus_tag="DSY0183"
/note="similarity to COG1373 Uncharacterized ATPases of
the AAA superfamily(Evalue: 1E-34)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516416.1"
/db_xref="GI:89892929"
/db_xref="GeneID:3954064"
/translation="MAYIKRTIETTIENAAKMFSTVLITGARQVGKTTVLKHITEDIS
YLTLDDPILLLNAFEEAGSFFKSTPPPVIIDEIQYAPNLFPYIKMIADENGKRGQFYL
TGSQQFKMMKNVSESLAGRIGIINLLGLSLREIKGDADFNKAFIPTESYLETRRLSAK
ELNYKEIWKIIYKGSMPAMYADELDWQLFYGSYTKTYLERDVRELTQVGDELKFIKFM
TAMASRTSQMLNLTSIANEVGISVPTADRWLSILVSSNIVYLLKPYYNYIMKRAVKTP
KLYFLDTGLAAYLTKWNSPDVIEAGAMSGAFFETFVLAEILKGYYNAGILEPALYYYR
DKDAKEIDIILEENGTLYPIEIKKTANPSKEHIANFSVLDRLKDMKIGTGCVICMYDK
VIHINDNNVSIPVTWL"
misc_feature complement(195856..196197)
/locus_tag="DSY0183"
/note="AAA domain; Region: AAA_14; pfam13173"
/db_xref="CDD:221955"
misc_feature complement(195190..195669)
/locus_tag="DSY0183"
/note="Domain of unknown function (DUF4143); Region:
DUF4143; pfam13635"
/db_xref="CDD:222275"
gene 196631..197932
/locus_tag="DSY0184"
/db_xref="GeneID:3954065"
CDS 196631..197932
/locus_tag="DSY0184"
/note="similarity to COG1373 Uncharacterized ATPases of
the AAA superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516417.1"
/db_xref="GI:89892930"
/db_xref="GeneID:3954065"
/translation="MICLRRKLEEKLVQWKDRSEGRMPLLLYGARQVGKTYLLAELGE
KHFANTVYINLETNPAVAGYFADDITPERLIRFLETTVNQEIIPGKTLIIFDEIQSCE
RALTSLKYFCESAPEYHVAAAGSLLGVAINREHYSFPVGKVESMTLFPLDFEEFLWAM
GEERLAQEIRRCFSLLEPMAEVLHQKAIELYRYYLIVGGMPACVELFKRTGKLVLIPT
SQNEILNNYVADMAKYAGAADTVKIRACFNSIPAQLAKENKKFQYKVVQKGGSASLFG
VSIDWLTQAGIVLKCQKLEQAMNPIAVYVDLSSFKLYMSDVGLLVMKSGLPQQSVLTG
EANLFMGSVAENYVAQALAANGHSLYYWTSEHTAELDFVLQKGRDIIGIEVKKGTKVK
SKSINVFSQRYHSAYCIRFSEKNFGKTDNLWSVPLYGAFCV"
misc_feature 196646..197251
/locus_tag="DSY0184"
/note="Archaeal ATPase; Region: Arch_ATPase; pfam01637"
/db_xref="CDD:216619"
misc_feature 196694..197101
/locus_tag="DSY0184"
/note="AAA domain; Region: AAA_14; pfam13173"
/db_xref="CDD:221955"
misc_feature 197309..197794
/locus_tag="DSY0184"
/note="Domain of unknown function (DUF4143); Region:
DUF4143; pfam13635"
/db_xref="CDD:222275"
gene complement(198022..198699)
/locus_tag="DSY0185"
/db_xref="GeneID:3954066"
CDS complement(198022..198699)
/locus_tag="DSY0185"
/note="similarity to COG3381 Uncharacterized component of
anaerobic dehydrogenases"
/codon_start=1
/transl_table=11
/product="anaerobic dehydrogenase"
/protein_id="YP_516418.1"
/db_xref="GI:89892931"
/db_xref="GeneID:3954066"
/translation="MDTTEQKDLLEIRQFMYSFLSAVFLYPPQAEQVTMILQRQLFKE
FPLDIADEQYQEALANLVRWTNENCASDLVNVTSSLNKDYTALFIGPGHLAAPPWESV
YRTEERLTFGEPTLEVREWYQRCGLEFVHKNSEPDDHFGLELEFMSKLIASELEAWEE
DDVIKAEGLAREQPAFLDEHLLRWAKEFTQDVQASAQTLYYQGLAQLAYSYLIWDGKQ
LRDGKNT"
misc_feature complement(198064..198663)
/locus_tag="DSY0185"
/note="Nitrate reductase delta subunit; Region:
Nitrate_red_del; cl00958"
/db_xref="CDD:242221"
gene 198925..201324
/gene="dmsA"
/locus_tag="DSY0186"
/db_xref="GeneID:3958113"
CDS 198925..201324
/gene="dmsA"
/locus_tag="DSY0186"
/EC_number="1.7.99.4"
/note="similarity to COG0243 Anaerobic dehydrogenases,
typically selenocysteine-containing(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="anaerobic DMSO reductase subunit A"
/protein_id="YP_516419.1"
/db_xref="GI:89892932"
/db_xref="GeneID:3958113"
/translation="MSKQPELQNKTKISRRAFVKWSAAATATAAIAPSLVGCSTQTQA
SGEPAVVQAGQRLAGAEEKPSICWHNCGGRCQLKAYVKDGVVVRFGTDNVGPDTPEDL
QARACLKGRTQRQRLYHPDRLKYPMKRVGERGSGEWARISWEEAFDTTAKELRRIIDQ
YGNESVYFNYACGAYGLLNQTNSNNSLRRLLNIMGGYLQSYGNYSQANYMYAVPYMFG
NPYSGSSPTTFPDAKLIVMFGDNPACTRVGGFNSTYYLKLAKQNGARIIVIDPRHSDT
VSTFADQWIPIRPTTDSALVAGMAYVMISEGLHDQAFLDKYCLGFDEEHMPEGIPAGN
SYKSYILGESDGKPKTPEWASEITGIPVETIKQLARDIAGTKPGFILQGRGIQRHGNG
EFQSLAVPVLSFMTGNVGILGSNPGLYEGGPSVKTGNYPIGTNPIKTKISIFMWTDAI
ERILTKEQDRIEGADKTKSTIKMIINYGGNTLINQHSDSGRTAALLKDDSKCEFILGM
DNFMTPSMQYCDIVLPGVTQFEVNDMITRSMGHGVAYYGQKLVEPMFECKTINEVGRA
LAERLGVLAQFDDGKSEEDYLREFVGVSQASHPDFPSYEEFREKGIYKTKATKVVAYE
KFIKDPEANPLTTPSGKFEIFSKDLYDIQNPQIPAIPKYMPTEEGPEDPLKEKYPLQC
IGHHTKRRVHSTFDNMPWLEEAEAQMLWMNPQDAAARGLKDHDMIKVYNDRGTVKVKV
KVTPRLIPGVCSLPQGAWYTPDQSGVDVRGCINTLTKWTPNPLSKGNPQHTNLVQIEK
A"
misc_feature 198961..201321
/gene="dmsA"
/locus_tag="DSY0186"
/note="anaerobic dimethyl sulfoxide reductase, A subunit,
DmsA/YnfE family; Region: dmsA_ynfE; TIGR02166"
/db_xref="CDD:233756"
misc_feature 199114..200934
/gene="dmsA"
/locus_tag="DSY0186"
/note="This CD (MopB_DmsA-EC) includes the DmsA enzyme of
the dmsABC operon encoding the anaerobic dimethylsulfoxide
reductase (DMSOR) of Escherichia coli and other related
DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this
group has a predicted...; Region: MopB_DmsA-EC; cd02770"
/db_xref="CDD:239171"
misc_feature order(199123..199125,199135..199137,199147..199149,
199243..199245)
/gene="dmsA"
/locus_tag="DSY0186"
/note="putative [Fe4-S4] binding site [ion binding]; other
site"
/db_xref="CDD:239171"
misc_feature order(199537..199539,199639..199641,199654..199659,
199729..199737,199789..199794,199798..199800,
200074..200079,200086..200088,200356..200358,
200362..200364,200374..200376,200380..200382,
200446..200451,200461..200463,200515..200517,
200602..200604)
/gene="dmsA"
/locus_tag="DSY0186"
/note="putative molybdopterin cofactor binding site
[chemical binding]; other site"
/db_xref="CDD:239171"
misc_feature 200956..201318
/gene="dmsA"
/locus_tag="DSY0186"
/note="The MopB_CT_DmsA-EC CD includes the DmsA enzyme of
the dmsABC operon encoding the anaerobic dimethylsulfoxide
reductase (DMSOR) of Escherichia coli and other related
DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this
group has a predicted...; Region: MopB_CT_DmsA-EC;
cd02794"
/db_xref="CDD:239195"
misc_feature order(200974..200976,200980..200985,200992..200994,
200998..201006,201187..201189,201241..201243,
201289..201294)
/gene="dmsA"
/locus_tag="DSY0186"
/note="putative molybdopterin cofactor binding site; other
site"
/db_xref="CDD:239195"
gene 201338..201910
/gene="dmsB"
/locus_tag="DSY0187"
/db_xref="GeneID:3958129"
CDS 201338..201910
/gene="dmsB"
/locus_tag="DSY0187"
/EC_number="1.7.99.4"
/note="similarity to COG0437 Fe-S-cluster-containing
hydrogenase components 1(Evalue: 6E-56)"
/codon_start=1
/transl_table=11
/product="anaerobic DMSO reductase iron-sulfur subunit B"
/protein_id="YP_516420.1"
/db_xref="GI:89892933"
/db_xref="GeneID:3958129"
/translation="MAKQYGFYMDQSNCIGCFTCQIACKDKNDLEVGQCWRKVHEFQG
GDTILEGGVYRSNVFAYWLSMSCNHCQEPKCVQNCPAGAMYKREEDGIVLVDQNKCLG
CGYCTWSCPYGAPKLAGKTVSKCNFCIDLLEQGKNPACVDACIMRVIEFGPIDELRAK
YGNVDEVKGLPSAQITKPCIVISPHKKAIE"
misc_feature 201347..201823
/gene="dmsB"
/locus_tag="DSY0187"
/note="DMSO reductase, iron-sulfur subunit; Region:
DMSO_dmsB; TIGR02951"
/db_xref="CDD:131996"
gene 201925..202743
/gene="dmsC"
/locus_tag="DSY0188"
/db_xref="GeneID:3958145"
CDS 201925..202743
/gene="dmsC"
/locus_tag="DSY0188"
/EC_number="1.7.99.4"
/note="similarity to COG3302 DMSO reductase anchor
subunit(Evalue: 2E-27)"
/codon_start=1
/transl_table=11
/product="anaerobic DMSO reductase anchor subunit C"
/protein_id="YP_516421.1"
/db_xref="GI:89892934"
/db_xref="GeneID:3958145"
/translation="MHELPLLTFTLCLQAAVGAVLWAVVFRIKAQDAPLFKRNTLAAL
ILAAVGIVASLLHLGKPMLALTSMFNLATSWLSREIFFSGAFFGLLLIFWWVERREKA
PGARTALGVITAGVGLIDIYAMARLYMESIMPAWQNANTLISFYATAIVLGGIVFYVT
AGEQREKLPRVDLMLWAVVLVQAAFALGYVASLGALSGAGKETAALLAGSQATLILSW
LFTLGGVFLLSLSRTGRLAKQTSFLYLAMAVIVVGEIVGRYLFYTSGIPIGLGL"
misc_feature 201925..202710
/gene="dmsC"
/locus_tag="DSY0188"
/note="DMSO reductase anchor subunit (DmsC); Region: DmsC;
cl17519"
/db_xref="CDD:248073"
gene 203181..206717
/locus_tag="DSY0189"
/db_xref="GeneID:3954067"
CDS 203181..206717
/locus_tag="DSY0189"
/note="similarity to COG1197 Transcription-repair coupling
factor - superfamily II helicase(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516422.1"
/db_xref="GI:89892935"
/db_xref="GeneID:3954067"
/translation="MKTLSHYLRLGFDIEAVDKAVSYKEWPQMIYNLTGSQKPAFAAQ
LIQKGKPGLIITYSEELAQKWVNDLRSWLPGEDVLYFPSSEWLPFEVLGKSRETTIER
IRVLNRLAQDNQCTVVVPALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAG
YERLDVVDGKGQFAIRGGIMDIAPLDGEPLRVEFFDDEVDSIRVFDLETQKSTETLKS
VKIPPALEVVIRPEELEKLGWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLK
TGRVDESIYPYLSLLEEPLEPFFSLLSQDHYVILDEPLRLKEQLEFQQKERLEEYTQA
LAKGEEFYSPEDQFVSYEQFLRYGEKHPFVLISTLPREIPGVAPKRIFNLNARPLTGF
MGKTGILVDEIEHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALAKKHELHEPVQEGG
VYVYSSSLDQGFELPLSKLIVLSEAEIYKRERKAAVKRKKAPEKTGQRLQFADLKPGD
FVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLGSDAET
LPKLYKLGGSEWKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEFEEK
FPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAV
LVPTTILAQQHFNTFQERFMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHK
LVSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGV
RDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHF
LSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIID
EADRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLK
IAMRDLEIRGAGNLIGAQQHGHLAALGFELYSQMLKEAVQELKGEQVEEKIETSIEVQ
VDAYLPDIYIGERQLKAALYQRMVAIDNEEDLSMMIDELIDRFGTPPREVENLLKIVR
IKWMASGMKIEQIQQLKQQMVFRFAADPGISGEMLMTMATQSPYPVSFGTTGNGNLEI
KVRLRSVVQEELLEAIHKVLMVFNGIASKTAS"
misc_feature 203259..206678
/locus_tag="DSY0189"
/note="Transcription-repair coupling factor (superfamily
II helicase) [DNA replication, recombination, and repair /
Transcription]; Region: Mfd; COG1197"
/db_xref="CDD:224118"
misc_feature 204687..204983
/locus_tag="DSY0189"
/note="CarD-like/TRCF domain; Region: CarD_TRCF;
smart01058"
/db_xref="CDD:215001"
misc_feature 205128..205538
/locus_tag="DSY0189"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature 205155..205169
/locus_tag="DSY0189"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature 205449..205460
/locus_tag="DSY0189"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature 205629..205931
/locus_tag="DSY0189"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature order(205713..205724,205788..205793,205866..205874)
/locus_tag="DSY0189"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature 206262..206558
/locus_tag="DSY0189"
/note="TRCF domain; Region: TRCF; pfam03461"
/db_xref="CDD:202647"
gene 206756..207703
/locus_tag="DSY0190"
/db_xref="GeneID:3954068"
CDS 206756..207703
/locus_tag="DSY0190"
/note="similarity to COG0760 Parvulin-like peptidyl-prolyl
isomerase(Evalue: 5E-30)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516423.1"
/db_xref="GI:89892936"
/db_xref="GeneID:3954068"
/translation="MRSFRKGIIAALVLTLALTGCSSAGGDQWAAKVNGETITEQDFA
ARVSNVQKAYEGMGMDFSTDQGKEALNQVKSQVLEAMIASRLVIQEAQRLKLDVNDPS
ILEQEKNIIQMVGDESQYQEWLKQQAMTEDEVKNYFALSAEITKDVTVTPEQEKTFFE
NNQELYGGKGEEVQARHILVETEDEAKAIIAQLDGGADFSELAKEKSTDTGSQSSGGY
LGSFGKGKMVPEFEEAAFAQEVGTYTKTPVKSEFGYHIILVEDHKAATKADYEAVKSQ
VAEDALADAKAQKFGGYFDELREKAKANIEYSEKYKPAA"
misc_feature <206819..207205
/locus_tag="DSY0190"
/note="SurA N-terminal domain; Region: SurA_N_3; cl07813"
/db_xref="CDD:244798"
misc_feature 207284..207538
/locus_tag="DSY0190"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
gene 208018..208560
/locus_tag="DSY0191"
/db_xref="GeneID:3954069"
CDS 208018..208560
/locus_tag="DSY0191"
/note="similarity to COG2002 Regulators of
stationary/sporulation gene expression(Evalue: 1E-59)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516424.1"
/db_xref="GI:89892937"
/db_xref="GeneID:3954069"
/translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDREGEV
ILKKYSPIGELGDFAKEYADSLYEATGHIACIADRDVIIAVSGASKKEYLNKPIWSSI
EQAMAERKTVQLKAGEGKPDEDEEHVKLTSQVAAPIIAEGDPIGAVILMSKDPNVKMG
DLELKLVETAAGFLAKQMEQ"
misc_feature 208021..208554
/locus_tag="DSY0191"
/note="stage V sporulation protein T; Region: spore_V_T;
TIGR02851"
/db_xref="CDD:131898"
misc_feature 208039..208167
/locus_tag="DSY0191"
/note="looped-hinge helix DNA binding domain, AbrB family;
Region: lp_hng_hel_AbrB; TIGR01439"
/db_xref="CDD:200102"
gene 208687..210168
/locus_tag="DSY0192"
/db_xref="GeneID:3954070"
CDS 208687..210168
/locus_tag="DSY0192"
/note="similarity to COG1694 Predicted
pyrophosphatase(Evalue: 3E-67)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516425.1"
/db_xref="GI:89892938"
/db_xref="GeneID:3954070"
/translation="MSNILHVVGLGPAGLESMTLGDYRMIKEAGRVFLRTVNHPCAQD
LLAEGLQAESFDYLYERENSFERIYEEIVSRLEKECELYPEVVYGVPGHPTVAERSVV
LLVDKLSERFQVKVHPAVSFLDPLFAAIPLDPVEGFLLRNYDALKGSGITGKEWLIIP
QVYDGFIASEVKLDLMDIYPDEVELYVVQALGTKMQKVWQCPLYQLDHQTFDHLTTVV
VPPCGEGISMTKLLEVMSTLRGRGGCPWDAEQTHDSLKPYLIEESYEVLEAIEAQDMY
NLAEELGDLLLQVVFHAQVAQEAGEFQFQDVLKGIIDKMIRRHPHVFGDVRVQNSAEV
LSNWDQIKKEEKGEKAEEELFSFPKGLPALMLAVKTQKKVAKFGFDWPDLKGPLAKVY
EELKELEEAMAEQKGIQEEFGDILFALVNLSRFIKCDPEDSLRQTIRKFQLRFLEMAK
LAGQAGEGLGDLNLEKMDYYWEIAKSKEKNKEIGNNPEIKAGV"
misc_feature 208687..210123
/locus_tag="DSY0192"
/note="Protein containing tetrapyrrole methyltransferase
domain and MazG-like (predicted pyrophosphatase) domain
[General function prediction only]; Region: COG3956"
/db_xref="CDD:226465"
misc_feature 208705..209352
/locus_tag="DSY0192"
/note="S-AdoMet dependent tetrapyrrole methylases; Region:
TP_methylase; cl00304"
/db_xref="CDD:241767"
misc_feature order(208720..208722,208957..208965,208972..208980,
209047..209052,209110..209112,209161..209166,
209248..209250,209254..209259,209329..209334)
/locus_tag="DSY0192"
/note="active site"
/db_xref="CDD:212499"
misc_feature order(208720..208722,208738..208749,208753..208758,
208969..208974,208990..208992,208999..209004,
209029..209049,209065..209073,209077..209082,
209098..209106,209269..209271)
/locus_tag="DSY0192"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212499"
misc_feature order(208957..208965,208972..208977,209047..209052,
209164..209166,209248..209250,209254..209259,
209329..209334)
/locus_tag="DSY0192"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212499"
misc_feature 209377..209709
/locus_tag="DSY0192"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) N-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs; Region:
NTP-PPase_MazG_Nterm; cd11528"
/db_xref="CDD:212135"
misc_feature order(209377..209379,209386..209388,209440..209445,
209452..209454,209461..209466,209473..209478,
209485..209487,209494..209496,209509..209511,
209518..209523,209530..209547,209551..209553,
209560..209562,209587..209589,209596..209610,
209614..209622,209626..209631)
/locus_tag="DSY0192"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212135"
misc_feature order(209470..209472,209479..209481,209527..209529,
209536..209538)
/locus_tag="DSY0192"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212135"
misc_feature 209770..210111
/locus_tag="DSY0192"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) C-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs'; Region:
NTP-PPase_MazG_Cterm; cd11529"
/db_xref="CDD:212136"
misc_feature order(209770..209778,209782..209787,209794..209796,
209806..209808,209815..209823,209857..209862,
209878..209883,209908..209916,209920..209928,
209932..209937,209941..209943,209962..209970,
209977..209979,209983..210012,210019..210024,
210031..210033,210076..210078,210085..210087,
210097..210099)
/locus_tag="DSY0192"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212136"
misc_feature order(209821..209829,209854..209856,209866..209868,
209875..209877,209914..209919,209926..209928)
/locus_tag="DSY0192"
/note="active site"
/db_xref="CDD:212136"
misc_feature order(209863..209868,209875..209877,209914..209919,
209926..209928)
/locus_tag="DSY0192"
/note="putative chemical substrate binding site [chemical
binding]; other site"
/db_xref="CDD:212136"
misc_feature order(209866..209868,209875..209877,209917..209919,
209926..209928)
/locus_tag="DSY0192"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212136"
gene 210226..210501
/locus_tag="DSY0193"
/db_xref="GeneID:3954071"
CDS 210226..210501
/locus_tag="DSY0193"
/note="similarity to COG0776 Bacterial nucleoid
DNA-binding protein(Evalue: 6E-27)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516426.1"
/db_xref="GI:89892939"
/db_xref="GeneID:3954071"
/translation="MNKADLVAAVAEKAEVSKKDAEKAVNAVFASIEEALAKNEKVQL
VGFGTFEVKDRAERTGRNPQTKEAIVIPASKVPGFKAGKALKDAVQQ"
misc_feature <210301..210489
/locus_tag="DSY0193"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature order(210301..210303,210346..210348,210352..210354,
210358..210363,210370..210372,210382..210384,
210388..210393,210397..210399,210406..210417,
210445..210447,210457..210459,210463..210465,
210472..210474)
/locus_tag="DSY0193"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
misc_feature order(210304..210306,210313..210318,210325..210330,
210340..210354,210361..210366,210379..210381,
210445..210450,210460..210462,210466..210468,
210487..210489)
/locus_tag="DSY0193"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
gene 210589..210861
/locus_tag="DSY0194"
/db_xref="GeneID:3954072"
CDS 210589..210861
/locus_tag="DSY0194"
/note="similarity to COG1188 Ribosome-associated heat
shock protein implicated in the recycling of the 50S
subunit (S4 paralog)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516427.1"
/db_xref="GI:89892940"
/db_xref="GeneID:3954072"
/translation="MRIDKYLKVSRLIKRRTVAKDICEGEKIRLNGRIAKPSAEVKPG
DIVTLEMARHLLEVRVLSTPNSAKANEAHLLYEVLKDEKRGGQEEI"
misc_feature 210589..>210735
/locus_tag="DSY0194"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature order(210592..210594,210628..210633,210637..210642,
210646..210651,210658..210663,210667..210669,
210688..210693,210694..210708,210712..210714)
/locus_tag="DSY0194"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
gene 211771..212064
/locus_tag="DSY0195"
/db_xref="GeneID:3954073"
CDS 211771..212064
/locus_tag="DSY0195"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516428.1"
/db_xref="GI:89892941"
/db_xref="GeneID:3954073"
/translation="MEKGGLVGMEKNPSNHRLAMDNRQFLSLTGVSKVQSFDPKEILL
ETIQGVLSIKGEKLGIKHLDLKAGQVEVEGLIDALVYPRNSGSRQNVWAKIFR"
misc_feature 211816..212061
/locus_tag="DSY0195"
/note="YabP family; Region: YabP; cl06766"
/db_xref="CDD:244496"
gene 212141..212629
/locus_tag="DSY0196"
/db_xref="GeneID:3954074"
CDS 212141..212629
/locus_tag="DSY0196"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516429.1"
/db_xref="GI:89892942"
/db_xref="GeneID:3954074"
/translation="MIWVVAAGAAVGFVFDFYRSLRKWLGWGKVMTVVGDLIFSAAAL
FLLFKFFLKANHLDLRFYIVWGSVLGLFLYTRILSRITLWLFFKCYRFIEACLGLILL
VLKFPFKVLAVLMRPPYAALRWFSLLVFRIAEAFLGKPLTKTRKTMISFWERLFPPRT
NG"
misc_feature 212186..212380
/locus_tag="DSY0196"
/note="Spore cortex protein YabQ (Spore_YabQ); Region:
Spore_YabQ; pfam09578"
/db_xref="CDD:204269"
gene 213046..213372
/locus_tag="DSY0197"
/db_xref="GeneID:3954075"
CDS 213046..213372
/locus_tag="DSY0197"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516430.1"
/db_xref="GI:89892943"
/db_xref="GeneID:3954075"
/translation="MILTKKSPTTKESRPKTRKQPFRPLSTLVVLFAFCALVSSAYQL
YELRKEVNQSIAQLNQEKEDLLQQQKLLEEEILQLNTPSYIEQLAREQLGLVRKGEIR
IAPKTE"
misc_feature 213127..213348
/locus_tag="DSY0197"
/note="Septum formation initiator; Region: DivIC; cl17659"
/db_xref="CDD:248213"
gene 213495..213881
/locus_tag="DSY0198"
/db_xref="GeneID:3954076"
CDS 213495..213881
/locus_tag="DSY0198"
/note="similarity to COG1098 Ribosomal protein S1
domains(Evalue: 1E-36)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516431.1"
/db_xref="GI:89892944"
/db_xref="GeneID:3954076"
/translation="MAIAVGTIVEGVVTGITNFGAFVELPEKVTGLVHISEVADAYVK
DVRDYLKEQDRVKVKVIHVDEKGKIGLSIKQANPSPKNTTRERRQPTVSFEDKLAKFI
KDSDERQLEFRRATESKRGGRGSSRY"
misc_feature 213546..213716
/locus_tag="DSY0198"
/note="S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_hs4; cd05692"
/db_xref="CDD:240197"
misc_feature order(213558..213560,213588..213590,213594..213596)
/locus_tag="DSY0198"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240197"
gene 214134..216245
/locus_tag="DSY0199"
/db_xref="GeneID:3954077"
CDS 214134..216245
/locus_tag="DSY0199"
/note="similarity to COG2208 Serine phosphatase RsbU,
regulator of sigma subunit(Evalue: 2E-52)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516432.1"
/db_xref="GI:89892945"
/db_xref="GeneID:3954077"
/translation="MVRGEVMAEWATLKTKQGLRKEKLTLEGHFWPFLLGLLIARGSI
LGLYPFGIAFGAALMLHGRKGTMMGLLGVTAGVSSLFLKDLASGLQILLTLLILSLFV
PRLRGNKRESLYLGISTALVTGCVALAVLSFGQFEVSLGMQAAVLGILNGGLAVVFRF
ALRYQDAVWRGNFTREQGMAWLLILIGVLSGLHGVMFKEINFSVVVLSFFILFIAQRF
GAGAAAGVGAMLGFLPQLEFNPQNLMAAGIYGLAGFGTGAFQKLGKLGLGVAFMSITL
MFTVYLQPEVLYSQLLSSGIGLLLFLLFPSTTSQHDFLKDKPMPEVESTVTKVKTVAE
IFDQIAYSAQAAEAEVGKSKPEIPELMNVLVERVCKNCPTLDTCWTREFYRTYHLLFN
LFEWVEREEEKVNVQNLPVEWKRHCGKLKEMLLGVQFIMEHEKSIESWRSRLTANQEA
LARQFQSVSQVIGHLAKELNARHNVEQVKPASLARRRKQFLDVGVASFTKKGNSISGD
NYASLAFAPTQHAFIVSDGMGVGEGAAKMSSTALNLLEQLLTTGFEPESAIQALNSIL
VLRSPEESFVTLDIGILDCESDDLKLIKVGACPSYIVREDKVHIFQSSSLPVGILNHV
EIPVIEEKLRPDEYLVLVTDGIQDILKDGKDWLKKFLDRQHPQTAQELAEAIVQEARA
MSGNDLADDGIVLVVKKNIFH"
misc_feature 214230..>215564
/locus_tag="DSY0199"
/note="stage II sporulation protein E; Region: spore_II_E;
TIGR02865"
/db_xref="CDD:234038"
misc_feature 215694..216227
/locus_tag="DSY0199"
/note="Stage II sporulation protein E (SpoIIE); Region:
SpoIIE; pfam07228"
/db_xref="CDD:219343"
gene 216268..217686
/locus_tag="DSY0200"
/db_xref="GeneID:3953863"
CDS 216268..217686
/locus_tag="DSY0200"
/note="similarity to COG0037 Predicted ATPase of the
PP-loop superfamily implicated in cell cycle
control(Evalue: 2E-41)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516433.1"
/db_xref="GI:89892946"
/db_xref="GeneID:3953863"
/translation="MYEKLKQQVLPQLIAPGSRILAAVSGGPDSVALAHILWRYIQDK
QEQKITLVITHVHHGVREESDDEEKMVQNMARDWEIPCLIHRFDSKNYAKSVGKSFQT
AAREWRYACWQEDMRKENCTLLATAHHLGDQAETVLYRLLRGSGTAGLAGIYPQKGKL
IRPLLTVTKEDILEYCRNEKLPYALDHSNEEPVYVRNKIRLQLLPELQREYNPKIIEA
LGRTAEVLRWDEEYLEEEVQSAWKRWAILDTEQRVGLRRTIFELPKAILSRLIRRAAT
LVSGEPRGIAFQYVEQVMASQGQVGWSQDLPGLNIGIDYQGVWFQRADWGQSINESPD
ILLPSLPVGAHWGEWLPWRDEAGVNWLVGLFCLEKEAEDNDYPGQCVDKVFFDGPGLI
RNSEKLQWRYRQEGDCLWLAGLGHKSLKKIFQDAKVPAKHRPVIPLLAMGNEILWIPG
VKRGDRYPLEQGKGAVGVLIKC"
misc_feature 216268..217077
/locus_tag="DSY0200"
/note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning]; Region:
MesJ; COG0037"
/db_xref="CDD:223115"
misc_feature 216322..216882
/locus_tag="DSY0200"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:238950"
misc_feature order(216334..216342,216346..216357,216430..216432,
216436..216438)
/locus_tag="DSY0200"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238950"
misc_feature 217459..217659
/locus_tag="DSY0200"
/note="TilS substrate C-terminal domain; Region: TilS_C;
smart00977"
/db_xref="CDD:198045"
gene 217829..219802
/locus_tag="DSY0201"
/db_xref="GeneID:3953864"
CDS 217829..219802
/locus_tag="DSY0201"
/note="similarity to COG0465 ATP-dependent Zn
proteases(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516434.1"
/db_xref="GI:89892947"
/db_xref="GeneID:3953864"
/translation="MKFFKNAAVYLLIILIAIMLIRFANPPATQPLDMDYTKFYEAVV
TGQVEEVVISTDDNVNTYEVKTKDGQQYVVLGEAKDVDLSAQMNEHKVNVRVNPPVTT
PWWAGLITTVLPFLLIGGFIFFMMQQSQGGGNRVMQFGKSRAKLVTDEKKKVTFADVA
GADEVKEELEEVVEFLKFPKKFNELGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPF
FSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDER
EQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPALLRPGRFDRQVVVDVPDVKGREE
ILKVHVKGKPMHSDVELDVLARRTPGFTGADLANLVNEAALLSARRNEKEIKMNALED
SVERVIAGPEKKARVISDYEKKLVSYHEAGHALVGEMLTHTDPLHKVSIIPRGRAGGY
TLLLPKEDRNYMTKSHLLDQVTMLLGGRVAEALVLHEISTGASNDLERATGLVRKMIT
ELGMSEELGPLTFGQKEGQVFLGRDIARDRNYSEAVAYSIDKEARRMIDECYLKAQTI
IQENMHKLNAIAETLMEKETIEAKEFAELMARFDQPVETAQVPEPSETENNTTEHDDL
LPATEETSVEEEGRTEAEGLSGSTLEEEKNKID"
misc_feature 217895..>218050
/locus_tag="DSY0201"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:219052"
misc_feature 218138..219619
/locus_tag="DSY0201"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:233327"
misc_feature 218396..218803
/locus_tag="DSY0201"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 218417..218440
/locus_tag="DSY0201"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(218420..218443,218594..218596,218735..218737)
/locus_tag="DSY0201"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 218582..218599
/locus_tag="DSY0201"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 218777..218779
/locus_tag="DSY0201"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 218987..219613
/locus_tag="DSY0201"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:216502"
gene 219814..220263
/gene="ndk"
/locus_tag="DSY0202"
/db_xref="GeneID:3953865"
CDS 219814..220263
/gene="ndk"
/locus_tag="DSY0202"
/note="catalyzes the formation of nucleoside triphosphate
from ATP and nucleoside diphosphate"
/codon_start=1
/transl_table=11
/product="nucleoside diphosphate kinase"
/protein_id="YP_516435.1"
/db_xref="GI:89892948"
/db_xref="GeneID:3953865"
/translation="MEKTFIMLKPDAVQRGLVGQIIARFETKGCKLVGMKLMSVDQAL
AEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIR
GSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE"
misc_feature 219817..220206
/gene="ndk"
/locus_tag="DSY0202"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:239876"
misc_feature order(219838..219840,219958..219960,219982..219984,
220066..220068,220084..220086,220117..220119,
220147..220149,220156..220158,220162..220167,
220189..220191)
/gene="ndk"
/locus_tag="DSY0202"
/note="active site"
/db_xref="CDD:239876"
misc_feature order(219850..219852,219865..219873,219880..219882,
219889..219891,219916..219924)
/gene="ndk"
/locus_tag="DSY0202"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239876"
gene 220345..221082
/locus_tag="DSY0203"
/db_xref="GeneID:3953866"
CDS 220345..221082
/locus_tag="DSY0203"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516436.1"
/db_xref="GI:89892949"
/db_xref="GeneID:3953866"
/translation="MIRVRGVLTMNLPKNGKMMLTVAGLILGILFISLLKTTGAAGST
ARTDTTLASLIQIGQENEQLKNDISKLKEDLSKFQAGQNASKVVLEQLDTAKRNAGLT
KVTGPGLRITLDDAQDRDINNEDIQYYVIHEEYIRTIVNLLWHGGAEAVAVNGQRITG
NTEIFCSGAFIQIGQTRQMPPYVIEAVGDVNYLQSSLNFYFWDRLGEYQEQYGITRKL
EVPTEPLVIPAGKAQQFRYSEPMKEAK"
misc_feature 220609..221064
/locus_tag="DSY0203"
/note="Bacterial protein of unknown function (DUF881);
Region: DUF881; pfam05949"
/db_xref="CDD:218822"
gene 221082..221774
/locus_tag="DSY0204"
/db_xref="GeneID:3953867"
CDS 221082..221774
/locus_tag="DSY0204"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516437.1"
/db_xref="GI:89892950"
/db_xref="GeneID:3953867"
/translation="MKKRTLAIPLTLVALVLGFLLTLQMQTQKSVLELEKIQAQRAAS
ARDFLAEAQEENKLLKEQHTALTAQLEEARTQGGTSPALLAELDRYRMMEGTVNVQGP
GIVITIDDRQQEHKVVLPMSNEDLLEIINTLKFAGAEAISVNGQRVVASSAIVLSGTS
TKLINQVPITRTEGVPYEILAIGNQDQLLDYFTQLKAQRLKQLGMSVSVSRKTVQIPS
YKGVSPVKSPES"
misc_feature 221331..221759
/locus_tag="DSY0204"
/note="Bacterial protein of unknown function (DUF881);
Region: DUF881; pfam05949"
/db_xref="CDD:218822"
gene 221957..223627
/locus_tag="DSY0205"
/db_xref="GeneID:3953868"
CDS 221957..223627
/locus_tag="DSY0205"
/note="catalyzes the formation of
10-formyltetrahydrofolate from formate and
tetrahydrofolate"
/codon_start=1
/transl_table=11
/product="formate--tetrahydrofolate ligase"
/protein_id="YP_516438.1"
/db_xref="GI:89892951"
/db_xref="GeneID:3953868"
/translation="MKTDIEIAQEATMKPITEIAQGLDLLEDEIELYGKYKAKVNFSA
WERLKDKPDAKLILVTAINPTPAGEGKTTTTVGLGQAMSKIGKNAMIALREPSLGPCF
GVKGGAAGGGYAQVVPMEDINLHFTGDFHAITSTHNLLAALLDNHIQQGNLLNIDPRQ
IVFRRVMDMNDRALRKIVIGLGGRTEGIPRENGFDITVASEIMAILCLAKDLMDLKER
FGRIVVAYTYDGKAITAHDLEAEGAMALLMKDAIKPNLVQTLENTPVFIHGGPFANIA
HGCNSVVATRMAMKLADYVITEAGFGADLGAEKFYDLKCRFAELKPAATVIVATVRAL
KMNGGVAKEDLGPENLEALAKGIVNLEKHIENIGKFGVPAVVAINRFPTDTDAELEFV
AERCRQLGAEFALSEVFTKGGEGGIELAKAVLNIVDNKESNFHVLYELDLPIAKKIET
ICKEVYGADGVNFTKEALTSMKKYEELGYGQLPICMAKTQYSLTDDQNVLGRPSGFTI
TVRELRLSAGAGFLVAITGAIMTMPGLPKRPAALRMDIDAAGRITGLF"
misc_feature 221957..223624
/locus_tag="DSY0205"
/note="formate--tetrahydrofolate ligase; Provisional;
Region: PRK13505"
/db_xref="CDD:237403"
misc_feature 222005..223576
/locus_tag="DSY0205"
/note="Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS is
a highly expressed key enzyme in both the Wood-Ljungdahl
pathway of autotrophic CO2...; Region: FTHFS; cd00477"
/db_xref="CDD:238266"
misc_feature order(222239..222241,222341..222343)
/locus_tag="DSY0205"
/note="Potassium binding sites [ion binding]; other site"
/db_xref="CDD:238266"
misc_feature order(222239..222244,222320..222328)
/locus_tag="DSY0205"
/note="Cesium cation binding sites [ion binding]; other
site"
/db_xref="CDD:238266"
gene 223793..224338
/locus_tag="DSY0206"
/db_xref="GeneID:3953869"
CDS 223793..224338
/locus_tag="DSY0206"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516439.1"
/db_xref="GI:89892952"
/db_xref="GeneID:3953869"
/translation="MPRVNRILQHRNYEEFTEKNKQAEQKRIYCRHGSDHGLAVARIA
YLYLLEKYIEDRDSLPGTGTNKASVRLEESYGLGKESIYAAGILHDIGRWVEYENQED
HALAGARLARPILKDCGFTEAEMEKIVLGISEHRLPPDQTSSILGQALALADDWARDC
QSCSSKATCYKYTKAMEDILI"
misc_feature <224003..>224128
/locus_tag="DSY0206"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cl17215"
/db_xref="CDD:247769"
gene 224694..225593
/locus_tag="DSY0207"
/db_xref="GeneID:3953870"
CDS 224694..225593
/locus_tag="DSY0207"
/note="similarity to COG0294 Dihydropteroate synthase and
related enzymes(Evalue: 1E-68)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516440.1"
/db_xref="GI:89892953"
/db_xref="GeneID:3953870"
/translation="MGKSLKGLLDALEPPKQRVLPCRGKDIVLGERTLIMGILNLTPD
SFSDGGKFNTLERALKQAEALVEQGADILDIGAESTRINHEPVSAEEEWERLEAVLKA
LLPRIAVPISVDTYKADVAERALAAGVHMINDVWGLQKDPRMAEVVGRAQAPVIVMHN
QEGSNYHHLMGDIMAYLKKSIHLAEEQGLAGDQIIIDPGIGGTAFGKSLDIDLEIMSR
LEEFRSLGRPILLGTSRKSMIGQTLNLPTEERLEGTLATSVVGVAAGVDILRVHDVQA
NKRAVQMADAIYRRKRGENFSGS"
misc_feature 224790..225548
/locus_tag="DSY0207"
/note="DHPS subgroup of Pterin binding enzymes. DHPS
(dihydropteroate synthase), a functional homodimer,
catalyzes the condensation of p-aminobenzoic acid (pABA)
in the de novo biosynthesis of folate, which is an
essential cofactor in both nucleic acid and...; Region:
DHPS; cd00739"
/db_xref="CDD:238380"
misc_feature 224793..225554
/locus_tag="DSY0207"
/note="dihydropteroate synthase; Region: DHPS; TIGR01496"
/db_xref="CDD:233439"
misc_feature order(224811..224813,225033..225035,225090..225092,
225096..225098,225165..225167,225282..225284,
225387..225389,225399..225401,225501..225503,
225507..225509)
/locus_tag="DSY0207"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238380"
misc_feature order(225330..225332,225342..225347,225459..225461,
225471..225473,225483..225485,225528..225533)
/locus_tag="DSY0207"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238380"
misc_feature 225393..225401
/locus_tag="DSY0207"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:238380"
gene 225583..225951
/locus_tag="DSY0208"
/db_xref="GeneID:3953871"
CDS 225583..225951
/locus_tag="DSY0208"
/note="similarity to COG1539 Dihydroneopterin
aldolase(Evalue: 4E-25)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516441.1"
/db_xref="GI:89892954"
/db_xref="GeneID:3953871"
/translation="MDRDRIALRGLKFFAYHGMLREEKILGQTFIVDIDLYADLSKAG
KSDQVEDTINYAEVYARIKTIVKREKYQLIERLAERIAEDVLGEFPCEGVRVVIHKPQ
APIPGIFDEAFVEIYREKKR"
misc_feature 225589..225939
/locus_tag="DSY0208"
/note="Dihydroneopterin aldolase (DHNA) and
7,8-dihydroneopterin triphosphate epimerase domain
(DHNTPE); these enzymes have been designated folB and
folX, respectively. Folate derivatives are essential
cofactors in the biosynthesis of purines, pyrimidines,
and...; Region: DHNA_DHNTPE; cd00534"
/db_xref="CDD:238298"
misc_feature order(225592..225624,225640..225666,225886..225891,
225904..225930)
/locus_tag="DSY0208"
/note="homooctamer interface [polypeptide binding]; other
site"
/db_xref="CDD:238298"
misc_feature order(225634..225642,225649..225651,225796..225807,
225880..225882,225922..225924)
/locus_tag="DSY0208"
/note="active site"
/db_xref="CDD:238298"
gene 225948..226421
/locus_tag="DSY0209"
/db_xref="GeneID:3953872"
CDS 225948..226421
/locus_tag="DSY0209"
/note="similarity to COG0801
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(Evalue: 9E-37)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516442.1"
/db_xref="GI:89892955"
/db_xref="GeneID:3953872"
/translation="MKAYLSIGSNLGDRGHYLQQSCQRLAEHPDVKIIKKSGTYETKP
WGNVDQPDFWNQVLEIETSLAPLDLLNLCQEVEKSLGRERLIRWGPRTIDIDLLNYDN
KVWEDERLILPHPRMEEREFVLAPLREIAPHYILPSGKKVTEVCGDGEVWRLESK"
misc_feature 225954..226337
/locus_tag="DSY0209"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:238269"
misc_feature order(225969..225971,226071..226076,226080..226082,
226104..226106,226110..226112,226155..226157,
226167..226169,226176..226178,226191..226193,
226197..226199,226209..226211,226218..226220,
226227..226229,226233..226238,226278..226280,
226287..226292,226305..226307,226311..226313)
/locus_tag="DSY0209"
/note="catalytic center binding site [active]"
/db_xref="CDD:238269"
misc_feature order(226155..226157,226167..226169,226176..226178,
226191..226193,226197..226199,226218..226220,
226233..226238,226278..226280,226287..226292,
226305..226307)
/locus_tag="DSY0209"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238269"
gene 226532..227530
/locus_tag="DSY0210"
/db_xref="GeneID:3953873"
CDS 226532..227530
/locus_tag="DSY0210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516443.1"
/db_xref="GI:89892956"
/db_xref="GeneID:3953873"
/translation="MDHYDRDGEGKQSIAEHLHVCGVLFYMIRGQELCGLGEVNMNFG
IIGAGIVGTAIAIRLRQAGHHLVGVHSRSRRSYERFCTYLHHGERRPLEEWLPEADLL
FITTQDCMIRAAAEELTRRGLYKEGQTWIHCSGSVSSRVMQVDKDLPINYLSLHPLQA
FAGIDQAVELIPGTHFGIEGDREDIGLAIVTQLGGIPHQLDPQQKPLYHAGAVVASNY
LVTLVGLAVQLFEEAGITNQEALESLLPLMKGALQNLENVGLPQALTGPIARGDVDVI
RGHLEHMPAKIDPVYRALGLYTLDIGQKKMELNGGAYAKEVWEEMNSLMVKGTNEL"
misc_feature <226706..227002
/locus_tag="DSY0210"
/note="Rossmann-like domain; Region: Rossmann-like;
pfam10727"
/db_xref="CDD:204548"
misc_feature 227048..227428
/locus_tag="DSY0210"
/note="Domain of unknown function (DUF2520); Region:
DUF2520; pfam10728"
/db_xref="CDD:220865"
gene 227527..228375
/gene="panC"
/locus_tag="DSY0211"
/db_xref="GeneID:3953874"
CDS 227527..228375
/gene="panC"
/locus_tag="DSY0211"
/note="catalyzes the formation of (R)-pantothenate from
pantoate and beta-alanine"
/codon_start=1
/transl_table=11
/product="pantoate--beta-alanine ligase"
/protein_id="YP_516444.1"
/db_xref="GI:89892957"
/db_xref="GeneID:3953874"
/translation="MIICKKISAVRDIVKEQRGQGRSIALVPTMGYLHEGHLTLVEEA
RKSGAFVVMSIFVNPLQFGPNEDFARYPRDLERDAKKAEGAGVDLIFNPEVEEMYPAK
NLTHVEVDELGDSLCGASRPGHFRGVTTVVSKLFHIVQPDRAYFGQKDYQQYLIICQM
VKDLNFPIEVIGVPIVREEDGLALSSRNIYLSPEQRAEALVLQRSLGEAENWFRQGER
SALSIEERIKELIRNESSGEIDYVEIRSAENLHRVEQIEGKIFIALAVRFGSTRLIDN
KVLEGM"
misc_feature 227527..228363
/gene="panC"
/locus_tag="DSY0211"
/note="pantoate--beta-alanine ligase; Region: panC;
TIGR00018"
/db_xref="CDD:232784"
misc_feature 227527..228354
/gene="panC"
/locus_tag="DSY0211"
/note="Pantoate-beta-alanine ligase; Region: PanC;
cd00560"
/db_xref="CDD:185673"
misc_feature order(227608..227619,227626..227628,227632..227637,
227644..227646,227698..227700,227707..227709,
227737..227739,227908..227910,227917..227922,
227962..227967,227971..227976,227983..227985,
228046..228054,228076..228087)
/gene="panC"
/locus_tag="DSY0211"
/note="active site"
/db_xref="CDD:185673"
misc_feature order(227608..227616,227626..227628,227635..227637,
227644..227646,227707..227709,227917..227922,
227962..227967,227971..227976,227983..227985,
228049..228054,228073..228078)
/gene="panC"
/locus_tag="DSY0211"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:185673"
misc_feature order(227608..227610,227614..227616,227698..227700,
227707..227709,227917..227922,227929..227931,
227983..227985)
/gene="panC"
/locus_tag="DSY0211"
/note="pantoate-binding site; other site"
/db_xref="CDD:185673"
misc_feature 227626..227637
/gene="panC"
/locus_tag="DSY0211"
/note="HXXH motif; other site"
/db_xref="CDD:185673"
gene 228376..228759
/locus_tag="DSY0212"
/db_xref="GeneID:3953875"
CDS 228376..228759
/locus_tag="DSY0212"
/EC_number="4.1.1.11"
/note="Converts L-aspartate to beta-alanine and provides
the major route of beta-alanine production in bacteria.
Beta-alanine is essential for the biosynthesis of
pantothenate (vitamin B5)"
/codon_start=1
/transl_table=11
/product="aspartate alpha-decarboxylase"
/protein_id="YP_516445.1"
/db_xref="GI:89892958"
/db_xref="GeneID:3953875"
/translation="MFRTMMKSKIHRATVTEANLKYVGSITIDEELLEVADILPNEKV
QVVNNNNGARLETYVIPGKRGERTVCLNGAAARLVQVGDEVIIIAYGIFTDEAARTYE
PKVIFVDEGNNPVKIAHEEIHGQQS"
misc_feature 228382..228711
/locus_tag="DSY0212"
/note="Aspartate alpha-decarboxylase or L-aspartate
1-decarboxylase, a pyruvoyl group-dependent decarboxylase
in beta-alanine production; Region: Asp_decarbox; cd06919"
/db_xref="CDD:132994"
misc_feature order(228382..228396,228400..228402,228406..228411,
228433..228444,228484..228486,228490..228492,
228499..228504,228514..228516,228520..228522,
228529..228531,228535..228549,228595..228600,
228604..228609,228631..228633,228643..228651,
228676..228678)
/locus_tag="DSY0212"
/note="tetramerization interface [polypeptide binding];
other site"
/db_xref="CDD:132994"
misc_feature order(228400..228402,228406..228408,228445..228450,
228547..228549)
/locus_tag="DSY0212"
/note="active site"
/db_xref="CDD:132994"
gene 229036..230544
/gene="nadB"
/locus_tag="DSY0213"
/db_xref="GeneID:3958209"
CDS 229036..230544
/gene="nadB"
/locus_tag="DSY0213"
/note="similarity to COG0029 Aspartate oxidase(Evalue:
1E-101)"
/codon_start=1
/transl_table=11
/product="L-aspartate oxidase"
/protein_id="YP_516446.1"
/db_xref="GI:89892959"
/db_xref="GeneID:3958209"
/translation="MRVTVLTKKGIPESNTKHAQGGIAVALDQEDSPSLHYEDTLYAG
AGLCESDSVRALVEDGPLRVEELIRMGAHFDRKNGKLAFTQEAAHSRRRVLHANGDAT
GEEIERTLIAQALGEERILVKEEQFLLDLLKNSKGEVIGALSLNELTHELEIYLAQAV
VLATGGLGQLYCYTTNPEVATGDGIAAAYRAGAQLMDMEFVQFHPTALFIPGAPRFLI
SEAVRGEGAQLLNAQGERFMQDVPGKELAPRDVVARGIWREQAKGEVTLDFRPIGVAK
VPRRFPMIYQTCLDYGINVLEERLPVAPAAHYMMGGVRTDERGRTSLPNLYANGECAC
NGVHGANRLASNSLLDGLVFGGRIVEDIVNTARAKGSSNPQPRDIYAEKDEKLPEAGQ
EQIPLKREELQELMWEYVGIIREEEGLKKAIKLIRSWDSAFIPEKEIPQLELKNLLTA
GYCVARAALAREESRGGHYRSDYPEINTRDLKHSIQARGTGDVCTIPVSRVD"
misc_feature 229036..230130
/gene="nadB"
/locus_tag="DSY0213"
/note="L-aspartate oxidase; Provisional; Region: PRK06175"
/db_xref="CDD:180442"
misc_feature 229039..230460
/gene="nadB"
/locus_tag="DSY0213"
/note="L-aspartate oxidase; Provisional; Region: PRK07395"
/db_xref="CDD:236010"
misc_feature 230230..>230490
/gene="nadB"
/locus_tag="DSY0213"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:217281"
gene 230507..231394
/gene="nadC"
/locus_tag="DSY0214"
/db_xref="GeneID:3958210"
CDS 230507..231394
/gene="nadC"
/locus_tag="DSY0214"
/note="similarity to COG0157 Nicotinate-nucleotide
pyrophosphorylase(Evalue: 8E-65)"
/codon_start=1
/transl_table=11
/product="nicotinate nucleotide pyrophosphorylase"
/protein_id="YP_516447.1"
/db_xref="GI:89892960"
/db_xref="GeneID:3958210"
/translation="MMFAPFQYQELIERALQEDLGTGDLSSAIFPKTAKTHAKIYAKQ
KGIACGLEITKQVFKTVDPELEVSISKADGELVERGTVVMEITGAICSILSAERTALN
FLQHLSGVATATFEAVTECYGLPTRITDTRKTIPGLRMLQKYAVAMGGGQNHRFGLYD
AVMLKDNHIAAAGGIRPAVAAARSRIGHMVKIEVECENLEQVQEAVAAGAEVIMLDNM
NLETMGKAVEIVQGRAVVEASGGIRKGDLRAVAETGVDVISMGAITHSVQAMDFSLDI
GDIKALTKERWEKGENCAK"
misc_feature 230519..231334
/gene="nadC"
/locus_tag="DSY0214"
/note="Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism]; Region: NadC; COG0157"
/db_xref="CDD:223235"
misc_feature 230534..231331
/gene="nadC"
/locus_tag="DSY0214"
/note="Quinolinate phosphoribosyl transferase (QAPRTase or
QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis of
NAD in both prokaryotes and eukaryotes. It catalyses the
reaction of quinolinic acid (QA) with...; Region: QPRTase;
cd01572"
/db_xref="CDD:238806"
misc_feature order(230582..230587,230795..230800,230810..230812,
230900..230902,230906..230908,230918..230923,
230978..230983,230993..230995,230999..231001,
231005..231010,231017..231019,231050..231052,
231299..231301)
/gene="nadC"
/locus_tag="DSY0214"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238806"
misc_feature order(230897..230905,230966..230971,231152..231154,
231221..231226,231281..231283,231287..231292,
231299..231301)
/gene="nadC"
/locus_tag="DSY0214"
/note="active site"
/db_xref="CDD:238806"
gene 231384..232364
/locus_tag="DSY0215"
/db_xref="GeneID:3953876"
CDS 231384..232364
/locus_tag="DSY0215"
/note="similarity to COG0340 Biotin-(acetyl-CoA
carboxylase) ligase(Evalue: 8E-40)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516448.1"
/db_xref="GI:89892961"
/db_xref="GeneID:3953876"
/translation="MRNKILDVLKNQQGEFVSGESLSQALSITRAAVWKQIQGLKEAG
YEIEGQTRKGYRLVGTPCALDLWALQQELRTQALGRQLFFFAELSSTNDLLKDMVRQG
REHGTVVIARRQTTGHGRMQRAWESPEGGLWLSLLLKPRLSLGDAAKLTLSTGVALAQ
TLQDLYGLAAGIKWPNDVVVQGRKIAGILGEVAGEWTTVQTLILGIGVNANFSGQTFS
SKLPATTLQDILGYEVNLNHLAAQLLFNLEKEVQSLEQGDVQGLIQRWTSFAVGINQP
VRIERAGTVYAGIFKGIREDGELILDLEGQEMTFSSGEVSLRAGDQYSPE"
misc_feature 231384..231608
/locus_tag="DSY0215"
/note="Biotin operon repressor [Transcription]; Region:
BirA; COG1654"
/db_xref="CDD:224568"
misc_feature 231393..232346
/locus_tag="DSY0215"
/note="bifunctional biotin--[acetyl-CoA-carboxylase]
synthetase/biotin operon repressor; Provisional; Region:
PRK11886"
/db_xref="CDD:237010"
misc_feature 231639..232139
/locus_tag="DSY0215"
/note="Biotin/lipoate A/B protein ligase family; Region:
BPL_LplA_LipB; cl14057"
/db_xref="CDD:246612"
misc_feature 232197..232337
/locus_tag="DSY0215"
/note="Biotin protein ligase C terminal domain; Region:
BPL_C; pfam02237"
/db_xref="CDD:216943"
gene 232420..233196
/locus_tag="DSY0216"
/db_xref="GeneID:3953877"
CDS 232420..233196
/locus_tag="DSY0216"
/EC_number="2.7.1.33"
/note="type III; catalyzes the formation of
(R)-4'-phosphopantothenate from (R)-pantothenate in
coenzyme A biosynthesis; type III pantothenate kinases are
not subject to feedback inhibition from coenzyme A and
have a high Km for ATP"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="YP_516449.1"
/db_xref="GI:89892962"
/db_xref="GeneID:3953877"
/translation="MILVFDVGNTNIVLGVYEQKDLIYHWRISTDKSRTVDEYAVIIK
NLFDLNGLDMSRIKAVVMSSVVPPVMPTLESLARKYFDVEPLVIGPGVKTGMPIVYDN
PREVGADRIVNAVAAYHKYGGPLVIVDFGTATTFCAISKRGEYLGGAIAPGVGISTEA
LFQRASKLPRIEIVKPKSIIAKNTVAGMQSGIYYGYTGQVDRIVTLMKQELGRDTRVI
ATGGLAELIQEDSQEIETVDPFLTLEGLLLIYERNSNQQP"
misc_feature 232420..233190
/locus_tag="DSY0216"
/note="pantothenate kinase; Reviewed; Region: PRK13318"
/db_xref="CDD:237347"
gene 233200..234180
/locus_tag="DSY0217"
/db_xref="GeneID:3953878"
CDS 233200..234180
/locus_tag="DSY0217"
/note="similarity to COG0042 Predicted TIM-barrel enzymes,
possibly dehydrogenases, nifR3 family(Evalue: 1E-74)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516450.1"
/db_xref="GI:89892963"
/db_xref="GeneID:3953878"
/translation="MDRRAMRLGKFELGIPAFLAPMAGVTDKAFRETVRSVGGLHVWT
EMISDKALTYMNSRTLEMLDLSGEASPRIVQLFGSEPEVMAKAAALAVERDAEIIDIN
MGCPTPKIVKNGEGSALLQDLPLAQRIAEAVVKAVEVPVTVKMRLGWTAERIVAPELA
KRVEAVGVQMVSVHGRTREQFYAGTANRDGIKKVKGGVSIPVIANGDIFSPQEAKTVL
EATGCDGVMVGRGSLGNPWLIPQINVFLNKGVLLEEPSLEQKLKVATEHFERVLNYKG
ERIGLNEMRKHAVWYIKGIRNAAQMRDYIMQTKTPLEMKNLFRRILQENA"
misc_feature 233221..234159
/locus_tag="DSY0217"
/note="putative TIM-barrel protein, nifR3 family; Region:
nifR3_yhdG; TIGR00737"
/db_xref="CDD:129820"
misc_feature 233251..233928
/locus_tag="DSY0217"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:239200"
misc_feature order(233257..233265,233335..233337,233422..233424,
233503..233505,233629..233631,233719..233721,
233812..233814,233818..233820,233884..233889)
/locus_tag="DSY0217"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239200"
misc_feature order(233422..233424,233512..233517,233629..233631,
233635..233637,233716..233721,233725..233730,
233815..233820,233887..233889)
/locus_tag="DSY0217"
/note="active site"
/db_xref="CDD:239200"
misc_feature order(233512..233514,233635..233637,233719..233721,
233725..233727)
/locus_tag="DSY0217"
/note="catalytic residues [active]"
/db_xref="CDD:239200"
misc_feature order(233515..233517,233629..233631,233716..233718,
233728..233730,233815..233820)
/locus_tag="DSY0217"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239200"
gene 234379..234849
/locus_tag="DSY0218"
/db_xref="GeneID:3953879"
CDS 234379..234849
/locus_tag="DSY0218"
/note="similarity to COG0782 Transcription elongation
factor(Evalue: 1E-42)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516451.1"
/db_xref="GI:89892964"
/db_xref="GeneID:3953879"
/translation="MAEKEVILTIEGLKRLEDELETLKTVKRREVAERIKQAIEFGDI
SENSEYDDAKNEQAFIEGRIITLEKMLRNARVIDDLEGSEVVALGTTVILKDKEFGEE
EEYTIVGSAEADPGSNKISNESPVGKAVLGQPKGTVVEINVPAGILYYEIVDIR"
misc_feature 234382..234846
/locus_tag="DSY0218"
/note="transcription elongation factor GreA; Reviewed;
Region: greA; PRK00226"
/db_xref="CDD:234693"
misc_feature 234394..234606
/locus_tag="DSY0218"
/note="Transcription elongation factor, N-terminal;
Region: GreA_GreB_N; pfam03449"
/db_xref="CDD:217565"
misc_feature 234625..234846
/locus_tag="DSY0218"
/note="Transcription elongation factor, GreA/GreB, C-term;
Region: GreA_GreB; pfam01272"
/db_xref="CDD:201702"
gene 235042..236508
/locus_tag="DSY0219"
/db_xref="GeneID:3953880"
CDS 235042..236508
/locus_tag="DSY0219"
/note="similarity to COG1190 Lysyl-tRNA synthetase class
II(Evalue: 1E-177)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516452.1"
/db_xref="GI:89892965"
/db_xref="GeneID:3953880"
/translation="MDEMNDLWRVRLDKLAQLRENGVEPYADRYQRTHMAQEILDGFD
TLEGQEVKIAGRMMSKRDQGKVVFTHIQDFSGQIQAYIRKDDVGEDWFELISKFDIGD
IVGIKGTVFRTRRGEISVHANEVQILSKSMRPLPEKFHGLTNVELRYRQRYVDLIMNP
EVRNVFVMRSKIIRSMRNFLEGQGFLEVETPTLHTIPGGAAARPFITHHNTLDMDLYL
RIALELPLKRLIVGGFDKVFEIGRNFRNEGISIKHNPEFTMMELYQAYANFEDIMELT
ENMISAIAKEVHGTTEVTYQGQMIDFKTPWRRLPMLEGILEYGGVDFSQIHTDEEAQQ
AAKEKGLKVEPGSSRGKIINEFFEEFVEPNLIQPTFVIGHPVEISPLAKRNAEHPEYT
DRFEAFAYGRELGNAFSELNDPIDQRQRFEAQVAERDKGDDEAHMMDEDFVQALEYGL
PPTGGLGIGIDRLVMLLTDSASIRDVILFPTMRPREDD"
misc_feature 235045..236499
/locus_tag="DSY0219"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysS;
PRK00484"
/db_xref="CDD:234778"
misc_feature 235189..235509
/locus_tag="DSY0219"
/note="LysRS_N: N-terminal, anticodon recognition domain
of lysyl-tRNA synthetases (LysRS). These enzymes are
homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs).
This domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop; Region: LysRS_N;
cd04322"
/db_xref="CDD:239817"
misc_feature order(235204..235209,235258..235263,235348..235350,
235426..235428,235435..235443)
/locus_tag="DSY0219"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239817"
misc_feature order(235216..235218,235222..235227,235243..235245,
235276..235278,235282..235284,235336..235338,
235378..235380,235396..235398)
/locus_tag="DSY0219"
/note="putative anticodon binding site; other site"
/db_xref="CDD:239817"
misc_feature 235516..236493
/locus_tag="DSY0219"
/note="Lys_tRNA synthetase (LysRS) class II core domain.
Class II LysRS is a dimer which attaches a lysine to the
3' OH group of ribose of the appropriate tRNA. Its
assignment to class II aaRS is based upon its structure
and the presence of three...; Region: LysRS_core; cd00775"
/db_xref="CDD:238398"
misc_feature 235612..235626
/locus_tag="DSY0219"
/note="motif 1; other site"
/db_xref="CDD:238398"
misc_feature order(235708..235710,235774..235776,235780..235782,
235798..235800,235810..235812,236227..236229,
236248..236250,236257..236259,236269..236271,
236425..236427)
/locus_tag="DSY0219"
/note="active site"
/db_xref="CDD:238398"
misc_feature 235771..235782
/locus_tag="DSY0219"
/note="motif 2; other site"
/db_xref="CDD:238398"
misc_feature 236416..236427
/locus_tag="DSY0219"
/note="motif 3; other site"
/db_xref="CDD:238398"
gene 236993..238660
/locus_tag="DSY_16SrRNA1"
/db_xref="GeneID:3957997"
rRNA join(236993..237129,237167..238660)
/locus_tag="DSY_16SrRNA1"
/product="16S ribosomal RNA"
/db_xref="GeneID:3957997"
gene 238891..238966
/locus_tag="DSY_tRNA5-Ala"
/db_xref="GeneID:3958059"
tRNA 238891..238966
/locus_tag="DSY_tRNA5-Ala"
/product="tRNA-Ala"
/db_xref="GeneID:3958059"
gene 239257..241759
/locus_tag="DSY_23SrRNA1"
/db_xref="GeneID:3958003"
rRNA 239257..241759
/locus_tag="DSY_23SrRNA1"
/product="23S ribosomal RNA"
/db_xref="GeneID:3958003"
gene 242145..242184
/locus_tag="DSY_5SrRNA1"
/db_xref="GeneID:3958009"
rRNA 242145..242184
/locus_tag="DSY_5SrRNA1"
/product="5S ribosomal RNA"
/db_xref="GeneID:3958009"
gene complement(242655..244280)
/locus_tag="DSY0220"
/db_xref="GeneID:3953881"
CDS complement(242655..244280)
/locus_tag="DSY0220"
/note="similarity to COG0840 Methyl-accepting chemotaxis
protein(Evalue: 3E-49)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516453.1"
/db_xref="GI:89892966"
/db_xref="GeneID:3953881"
/translation="MQRNKDVYVSNSKRNQALRLISHIAREMENVLNQSPHGDWAQVI
GPLRQVIDANIGDNEFLVINSLEGQALVHSNRFREGNFVTKGELGILGTTKPVSQIYH
RDTGEILLDVICPIYIKGEHRYVARMGIPLQKNKLSYNFALSSIPLFVLGLGWSWSSP
SLISIGVTLGAFTLWAAYSYIFHHKIISTLNEIFRVTKSITRGNLTNSAAIKTTNELS
TLSYEVNKVNNGIKSIIANITTISQKSHEISNSQAAHTKTLAESYEQLAALFQEFSAG
SVEQIDGMKRASEQVLEIQAASERIRYSTQEVQISSNSARQVSQDGLRAVEDIIQEME
VISSSTYKANTSIQSLEEQALKIGEIVSIINSISGQTNLLALNAAIEAARAGEHGRGF
SVVADEIRKLASDSAESAHQIMELIHSVQDMIGSASNDMSRGLVEVENGKIIIRQAGD
AIHSLDQVIQGTGEKIQANINNVDQLLLQSKNLAEVQSNAVSIASQFSLAAQQAATTM
DGQMQSTQQVASMAKDLAEASEQLDNFIKRFTL"
misc_feature complement(242685..243488)
/locus_tag="DSY0220"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:214599"
misc_feature complement(242925..243404)
/locus_tag="DSY0220"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(242925..242930,242937..242942,
242946..242951,242958..242960,242967..242972,
242979..242981,242988..242993,243030..243035,
243042..243047,243051..243056,243063..243068,
243075..243077,243084..243089,243096..243098,
243105..243107,243117..243119,243138..243140,
243147..243149,243159..243161,243168..243173,
243180..243182,243189..243191,243198..243203,
243210..243215,243222..243224,243231..243236,
243240..243242,243252..243257,243261..243266,
243273..243275,243282..243287,243294..243299,
243306..243308,243315..243320,243327..243329,
243336..243341,243345..243350,243357..243359,
243366..243371,243378..243383))
/locus_tag="DSY0220"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(243072..243173)
/locus_tag="DSY0220"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 244833..246371
/locus_tag="DSY0221"
/db_xref="GeneID:3953882"
CDS 244833..246371
/locus_tag="DSY0221"
/EC_number="6.1.1.13"
/note="transfers D-alanine to the D-alanyl carrier protein
during the incorporation of D-alanine into lipoteichoic
acid"
/codon_start=1
/transl_table=11
/product="D-alanine--poly(phosphoribitol) ligase subunit
1"
/protein_id="YP_516454.1"
/db_xref="GI:89892967"
/db_xref="GeneID:3953882"
/translation="MSGGLEVNLISRIDSYAESCPDRVAHHYRESRLTYRQLKEASDA
LACYLIETLKDDRTPIVVYGHKQHEMLICFLACVKSGHAYIPVDFSLPSQRIEDIIQS
SRTRLILSPGESPEREGIRTIRSDAISRLIRSYLGKSPSKDYQVKDHETYYIIYTSGS
TGKPKGVQITLANLESFVHWGVGVGRFPEAEVFLNQAPFSFDLSVMDLYLALTSGSTL
YSIDKAMIAEPKELFAHFKQSGLTVWVSTPSFAEMCLGDSSFNDELLPDLKVFMFCGE
TLSNQCAEKLYRRFPQGKVINSYGPTEATVAVTALIVDLEMCARKEPLPVGRVKEDCR
LLIVDSEGVPQEEGSQGEIVILGASVSPGYYRNEEMTDKAFFARSWDGDVKRCYRTGD
EGYLKEGLLHYGGRIDFQIKLNGYRIELEDIENNLRKVEGVANAIVLPIKKDGRVHYL
AGVVVPNKKLDKREFEIGQMIKAELKNYLPDYMIPRKIMFRDSLPMTVNGKVNRAALM
EEFQ"
misc_feature 244854..246368
/locus_tag="DSY0221"
/note="D-alanine--poly(phosphoribitol) ligase subunit 1;
Provisional; Region: PRK04813"
/db_xref="CDD:235313"
misc_feature 244881..246353
/locus_tag="DSY0221"
/note="D-alanine:D-alanyl carrier protein ligase (DltA);
Region: DltA; cd05945"
/db_xref="CDD:213310"
misc_feature order(245292..245294,245301..245318,245322..245327)
/locus_tag="DSY0221"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213310"
misc_feature order(245301..245306,245655..245660,245721..245738,
245808..245810,246006..246008,246039..246041,
246048..246050,246333..246335)
/locus_tag="DSY0221"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213310"
gene 246368..247516
/locus_tag="DSY0222"
/db_xref="GeneID:3954078"
CDS 246368..247516
/locus_tag="DSY0222"
/note="similarity to COG1696 Predicted membrane protein
involved in D-alanine export(Evalue: 7E-99)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516455.1"
/db_xref="GI:89892968"
/db_xref="GeneID:3954078"
/translation="MIPYSNLFFFYIIGLILLPGICLGVMEKPLKLYGLAASLLIIGL
LFSDSKLQLFLLVLFYLGELFLVKGYSLLRPKYPQRWILWLTILLALIPLALSKWGHL
FTDRLLGFLGISYLTFKVIQMLLEISDGLIKEVKLVDFTYFLLFFPTLSSGPIDRSRR
FLSEVNQSIPRHEYLHRVYQGLRKLLLGAGYKFILGNSIYTYWLSKIPTEAHGLAETV
NYMYGYSFYLFFDFAGYSLMAIGISYILGVKTPENFDKPFISKDIKDFWNRWHMTLSF
WFRDYLYTRFVMASMKKKRFKNRYTASYLGYLLTMGTMGIWHGTEIHYLLYGLYHGGL
IVGTDYFQRHSALYKKYKNTPLWIGASTLVTFHLVCFGFLIFSGYLFK"
misc_feature 246371..247507
/locus_tag="DSY0222"
/note="D-alanyl-lipoteichoic acid biosynthesis protein
DltB; Region: LTA_dltB; TIGR04091"
/db_xref="CDD:188606"
gene 247548..247781
/locus_tag="DSY0223"
/db_xref="GeneID:3954079"
CDS 247548..247781
/locus_tag="DSY0223"
/note="similarity to COG0236 Acyl carrier protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516456.1"
/db_xref="GI:89892969"
/db_xref="GeneID:3954079"
/translation="MEEKILSLLERVCGTDEVRNERDMNLFEAGILDSLGVIELLVGA
EELGIKIEPTEIERTDIDTPAKIIAAFSKRVAG"
misc_feature 247548..247754
/locus_tag="DSY0223"
/note="Phosphopantetheine attachment site; Region:
PP-binding; cl09936"
/db_xref="CDD:245209"
gene 247778..248977
/locus_tag="DSY0224"
/db_xref="GeneID:3954080"
CDS 247778..248977
/locus_tag="DSY0224"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516457.1"
/db_xref="GI:89892970"
/db_xref="GeneID:3954080"
/translation="MKRFLPIVLALVISCLVVWGGNEILVSKIADNYDPSFGYKLNIQ
KNQGLILQRVGLEKGGSIPVYGSSELSGSTDPFQPVNFFAGQYEGVYYNLIGRGYCQS
LIHLINFGALGDSLKGEKIVFFLSPQWFSKTGITSDDFQKNFSQQQYLTFLNNEEISP
QLKRLTAQRVDSLLAQDESMDMRILSYLSANDAEQAQISLGALQPYYRLKEALLSTKD
HVQGYRTLVEESPLKGKDKSNMKPAIERSTVKIDWEAEKKRAQEVGKARSDNNQFGID
NGYFNDYLKEKLPNYKDSMHDQSYLESPEYGDLELLLSLCQELEIEPLFVSIPVNGLW
YDYCGFPRQDRAQYYEKVKQLVTKAGYEFADFSDHEYDPYFLRDTMHLGWKGWVEVNE
AILAYAR"
misc_feature 247787..248968
/locus_tag="DSY0224"
/note="D-alanyl-lipoteichoic acid biosynthesis protein
DltD; Region: LTA_DltD; TIGR04092"
/db_xref="CDD:234465"
misc_feature 247898..248026
/locus_tag="DSY0224"
/note="DltD N-terminal region; Region: DltD_N; pfam04915"
/db_xref="CDD:218326"
misc_feature 248060..248590
/locus_tag="DSY0224"
/note="DltD central region; Region: DltD_M; pfam04918"
/db_xref="CDD:113682"
misc_feature 248591..248959
/locus_tag="DSY0224"
/note="DltD C-terminal region; Region: DltD_C; pfam04914"
/db_xref="CDD:147203"
gene complement(249181..250632)
/locus_tag="DSY0225"
/db_xref="GeneID:3954081"
CDS complement(249181..250632)
/locus_tag="DSY0225"
/note="similarity to COG0471 Di- and tricarboxylate
transporters"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516458.1"
/db_xref="GI:89892971"
/db_xref="GeneID:3954081"
/translation="MYIHSAIGFAIMAIFWLAPAAAPLTPIGMKLVGIFLGMVYLWST
VSCLWPSVLGLFLIGLSGFAGQGFAGMKAVVLTGFGNDTVVMMLFIMVLFGAMDEVGC
TQYIARWFLTRKIITGRPFAFLAVFYLGCYVLSTLVSPITSLLLLWPVSLKIMKTLGV
ERTDKIWPIFFVGMFFISAIGMPFFPFLSAQLVVLSAFDAMTKGTMPVPYLPYMALNF
IMSMLLIVTFLGAVKFIFRPDISKLKAIDAERIAEQEKLPPMNIQQKIMMAVLPTFIL
MLLAPSFLPKSLAIVKLLGSLGTIGVAMFWIAILCFIRIGGKPIINFKEVAYRQLSWD
VFFLVAAAVYAANAISHESTGVNAFVIQLLNPILGDASEMVFVAILFTAAIVLTNFAN
NAAMAIILMPIILAFCGQLGLPPIPIAMGVTQLVFLAMLTPAACPHASMMFGRKDIYE
VKDIMKYGFPMVTIGLLYFIFIGYPLAKFLFGA"
misc_feature complement(249187..250614)
/locus_tag="DSY0225"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:223547"
misc_feature complement(249232..250410)
/locus_tag="DSY0225"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl17221"
/db_xref="CDD:247775"
misc_feature complement(order(249232..249258,249349..249408,
249460..249507,249586..249642,249697..249726,
249787..249801,249823..249840,249925..249945,
249958..250002,250063..250065,250084..250107,
250108..250146,250156..250209,250213..250263,
250339..250392))
/locus_tag="DSY0225"
/note="transmembrane helices; other site"
/db_xref="CDD:238344"
gene 251216..252988
/locus_tag="DSY0226"
/db_xref="GeneID:3954082"
CDS 251216..252988
/locus_tag="DSY0226"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516459.1"
/db_xref="GI:89892972"
/db_xref="GeneID:3954082"
/translation="MVVKNPYIINPLAAVICFNTDEETTAEITVKGKAIEGDLSHTFA
AAKEHVLPVYGLYDDYVNTVVIKLSNGKTSEVKIEVEELNVNKALYCRTTPEYFGKDF
MLISTTTPLIESARTVGFDYAGDLRWCITNLQSWDIKKLENGRLLYTSHRTVQKPYYN
VGVMEMDFCGKIYKEYRLPGGYHHDAVELENGNILAASDNDFNDSVEDFVVEIERATG
AVIKSWDLQKILPRGQGKAGDWNHHDWFHNNAVWYDKPTNSITMSGRHMDAVINFDYD
SGALNWILGDPEGWSEEWQKYFFKNVTKGDFDWQYEQHAARILPNGDVFLFDNGTYRS
KNEATRVDPEQNFSRGVIYRIDTDKMEIEQVWQYGKERGAEFYSPYICNVDYYGEGHY
MVHSGGIATYRGKHTDGLGAMLLNKYKDEHIHLTLESITVEVQNDQLKYELKVQGGNY
YRARRVSPYDEKTNLVLGKGELLGGFGVTPEFMKVNFKDAETELSEKHNLNVILEEDR
LAIRASFREGSQVFLELKGAEQSKFYNIPTEVHDVTAACVSFEEQNDNDFQFYVSREG
LSGEFGIYLNIDSKRYDTHLSVKL"
misc_feature 251216..252571
/locus_tag="DSY0226"
/note="Arylsulfotransferase (ASST); Region:
Arylsulfotrans; pfam05935"
/db_xref="CDD:218815"
gene 253185..254726
/locus_tag="DSY0227"
/db_xref="GeneID:3954083"
CDS 253185..254726
/locus_tag="DSY0227"
/note="similarity to COG0665 Glycine/D-amino acid oxidases
(deaminating)(Evalue: 2E-93)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516460.1"
/db_xref="GI:89892973"
/db_xref="GeneID:3954083"
/translation="MKIDHTKGKYYLDKSQGTPPSFWLDSTPKTNYPSLTGDISVDAV
VIGGGMAGISSAYLLTQEGLKVAVLETDRILQGTTAYTTAKLTSQHGLIYDKLLGQMG
AEKAKQYAEANESAIEFVAKLVEREAIDCDFTRQPAYIYTQQNKSKEKLEKEMKAAQQ
CGIDAHYVTELDLPLAVKGALRFDQQAQFHPRKYLLALAGKIAEKGGHIFEQTKAVDI
RGDGPFIVLTQQGSRVKADYVVMACHYPFNILPGLYVSRIYQEREYAVVVKAKEAFPG
GMYINAEEPARSLRGLPIPDGERILIVGEKHRTGHGKNLTEHYKNLMEFAQGLFTVEE
FPYYWSTQDCTTLDDLPYIGPISRSKPNLLIATGFRKWGMTHGTVAALIIRDRIVRGA
SPWQEVYAPSRSISLNFAASFMANSSLLAFDLVAGKLMRGKEIYSLRPGEAVIANMDG
RRVGLYMDSEANLHRVDTTCPHLGCEVQWNDAELSWDCPCHGSRYDVDGNPIEGPTLK
PLAKY"
misc_feature 253245..>253922
/locus_tag="DSY0227"
/note="putative aminophosphonate oxidoreductase; Region:
Phn_aa_oxid; TIGR03329"
/db_xref="CDD:132372"
misc_feature 253293..254369
/locus_tag="DSY0227"
/note="Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism]; Region: DadA; COG0665"
/db_xref="CDD:223737"
misc_feature 254310..254723
/locus_tag="DSY0227"
/note="Rieske Fe-S protein [Energy production and
conversion]; Region: QcrA; COG0723"
/db_xref="CDD:223795"
misc_feature 254481..254723
/locus_tag="DSY0227"
/note="Rieske domain; a [2Fe-2S] cluster binding domain
commonly found in Rieske non-heme iron oxygenase (RO)
systems such as naphthalene and biphenyl dioxygenases, as
well as in plant/cyanobacterial chloroplast b6f and
mitochondrial cytochrome bc(1) complexes; Region: Rieske;
cl00938"
/db_xref="CDD:242206"
misc_feature order(254592..254594,254598..254603,254646..254648,
254652..254657,254661..254663,254667..254669)
/locus_tag="DSY0227"
/note="iron-sulfur cluster [ion binding]; other site"
/db_xref="CDD:239550"
misc_feature order(254592..254594,254598..254603,254646..254648,
254655..254657,254661..254663)
/locus_tag="DSY0227"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:239550"
gene 254825..256522
/locus_tag="DSY0228"
/db_xref="GeneID:3954084"
CDS 254825..256522
/locus_tag="DSY0228"
/note="similarity to COG1283 Na+/phosphate
symporter(Evalue: 1E-153)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516461.1"
/db_xref="GI:89892974"
/db_xref="GeneID:3954084"
/translation="MDVQTMLFHFLGGLGLFLYGIKSMSDGLQAVAGDRLRVILEKGT
KTPLRGVLTGLIVTGLIQSSSGTTVLTVGLVNAGLLNLRQAIGIIMGANIGTTVTAYL
IGIKLEDYALPIIAVGVLILFFIKNKRLTYFGQVLLGFGLLFYGMSIMGDGLGPLKES
AYFIGLMSNVDNNPLLGVLIGTVFTCIVQSSSATIGVLQELANQGVVTYQQAVPILFG
DNIGTTITALLAGIGASVSARRAAATHFLFNFIGTFIFLPLTILGIFPLMVEQFTNFI
AFLIPGGGGWETLAIKMKIAQTHGLFNMTNTLMQLPFVGVLAAIVTKLIPEKDEVVVD
ANAQYLDRRFFGNPSVALANASREVMHMGKVAGQAVDNAMNYFFKRQSANRQYVIQME
SATDRLENQITEYVLKATSGTNLTKEQSDQRYRVLQVIGDMERVGDHSVNLIELTDYA
LENKVKFSEEAQKDLMEMFANVQDIYQASLDALQKNDVELAKKVLEYKKVLEYDDVID
EMEAKLRDGHIHRLNEGTCNGSYGAVFLNIISNLERIGDHSVNIAKYAMAEPKHKLT"
misc_feature 254879..256504
/locus_tag="DSY0228"
/note="Na+/phosphate symporter [Inorganic ion transport
and metabolism]; Region: NptA; COG1283"
/db_xref="CDD:224202"
misc_feature 254879..255283
/locus_tag="DSY0228"
/note="Na+/Pi-cotransporter; Region: Na_Pi_cotrans;
pfam02690"
/db_xref="CDD:202351"
misc_feature 255263..>255598
/locus_tag="DSY0228"
/note="Na+/Pi-cotransporter; Region: Na_Pi_cotrans;
pfam02690"
/db_xref="CDD:202351"
misc_feature 255899..256165
/locus_tag="DSY0228"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:216770"
misc_feature 256217..256492
/locus_tag="DSY0228"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:216770"
gene complement(256838..257398)
/locus_tag="DSY0229"
/db_xref="GeneID:3954085"
CDS complement(256838..257398)
/locus_tag="DSY0229"
/note="similarity to COG0582 Integrase(Evalue: 5E-25)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516462.1"
/db_xref="GI:89892975"
/db_xref="GeneID:3954085"
/translation="MTVEPIRDKAQIRTLYNHLNQSHPKYAMIFKFGINTGLRISDII
TLKVSDIYGSKKQFKDYLVLTEQKTGKLKKIKLNDTLRKALNIYIHKQNLELMDYLFP
SQKGGYIGRIQTYRVLKHSALTLGIENFGTHSLRKTWGYWTYKLSQYNIGLVMDIFNH
SSQSVTLRYIGINQDQRDQLYDIVQL"
misc_feature complement(256841..257392)
/locus_tag="DSY0229"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:241691"
misc_feature complement(order(256892..256894,257000..257008,
257195..257197,257279..257284))
/locus_tag="DSY0229"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238231"
misc_feature complement(order(256892..256894,256919..256921,
256991..256993,257000..257002,257195..257197,
257282..257284))
/locus_tag="DSY0229"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:238231"
misc_feature complement(order(256892..256894,256919..256921,
256991..256993,257000..257002,257282..257284))
/locus_tag="DSY0229"
/note="active site"
/db_xref="CDD:238231"
gene 257623..258468
/locus_tag="DSY0230"
/db_xref="GeneID:3954086"
CDS 257623..258468
/locus_tag="DSY0230"
/note="similarity to COG2206 HD-GYP domain(Evalue: 2E-21)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516463.1"
/db_xref="GI:89892976"
/db_xref="GeneID:3954086"
/translation="MKSNGGESADMKRIVCPKDYYNEQGLLLSAKGTKITLSQFLRLQ
RKYDFLSETEANERTLASYEKIKQKICREDERYKRADDQLLDQASALLVNIVFESKRK
PWYMYLTALGNHINWLYTHSIDVALLSLMMAIESGVSQRSLWDLGVGGILHDVGKLLI
PKKIIQKRTELSDIEKDILRQHCELGVECTTDCAFPILSQDIIAQHHERLDGSGYPNQ
LQEGQINEYVKIVMIADAFDTITAGRPYRKTVEVEEALAYLEDQEGAFSRMYLETLKN
ILVRP"
misc_feature 257974..258366
/locus_tag="DSY0230"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature order(257983..257985,258079..258084,258325..258327)
/locus_tag="DSY0230"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 258082..258084
/locus_tag="DSY0230"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
gene 258782..259099
/locus_tag="DSY0231"
/db_xref="GeneID:3954087"
CDS 258782..259099
/locus_tag="DSY0231"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516464.1"
/db_xref="GI:89892977"
/db_xref="GeneID:3954087"
/translation="MLNRLFRELRIEFYWVKKELTRRWHLDTPIGIVGVIVLLSGLGL
FLLIGQGIAKIFRAAIPWVTGNSVSTVYWSSIGLALKVSFVFLVFATSLLLLFWLKTH
YRR"
gene 259288..260523
/locus_tag="DSY0232"
/db_xref="GeneID:3954088"
CDS 259288..260523
/locus_tag="DSY0232"
/note="similarity to COG1215 Glycosyltransferases,
probably involved in cell wall biogenesis"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516465.1"
/db_xref="GI:89892978"
/db_xref="GeneID:3954088"
/translation="MIMIPVQLIIIFMTFYYFVLSMFGLFRRPDKKVLEPEKSFALVV
AAHNEEAVIGPLVDNLLNLDYPKELYDVFVVADNCTDKTALIAKNAGALVHQRFNNEK
RGKGYALEWMFHRLFKLERHYDAVIIFDADNLVNETFLVEMNSKLCQGHQIVQCYLDS
KNPYDTWVTNTFSITFWLSNRLLQLARYNTGFLNNVLGGTGMCISTKVLKDLGWGATS
LTEDLEFTMKALISGIKTTWAHDAIVYDEKPLTFIQAWNQRKRWAQGQVDVAGRYFFP
LIYKAFKERKLMYFDAAVHLFQPALVMIATFFMFVNLISGLQSSYTQVFNVVMPWSGW
QILSAFSLVFPVAALALERLPWRAYAGLILYPVFIYSWIPIVFLGFVNRKDKSWSHTK
HTRSIKYDDVVKEKKVSSS"
misc_feature 259288..260487
/locus_tag="DSY0232"
/note="Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane]; Region: COG1215"
/db_xref="CDD:224136"
misc_feature 259414..259962
/locus_tag="DSY0232"
/note="EpsO protein participates in the methanolan
synthesis; Region: EpsO_like; cd06438"
/db_xref="CDD:133060"
misc_feature 259675..259683
/locus_tag="DSY0232"
/note="DXD motif; other site"
/db_xref="CDD:133060"
gene 260717..261592
/locus_tag="DSY0233"
/db_xref="GeneID:3954089"
CDS 260717..261592
/locus_tag="DSY0233"
/note="similarity to COG0010
Arginase/agmatinase/formimionoglutamate hydrolase,
arginase family(Evalue: 6E-94)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516466.1"
/db_xref="GI:89892979"
/db_xref="GeneID:3954089"
/translation="MSKETLMKMTESPGVFMGGETPYEEADAVILGIPMDYTVSFRPG
TRLGPLSIRNVSIGIEEYSVYLDKDLSDYAYCDCGDLSLPFGNVEKSLQVIEAAARQV
VEDGKFPIFLGGEHLVTYPLLKPFIEKYPELRVVHFDAHADLRTDYSGEPNSHATVMR
KISEALGPHRVYQFGIRSGTREEFLFAKEHNHLVVEEVLEPLKAVLPELKGKPVYVTL
DIDVVDPAFAPGTGTQEAGGCTSREIIKAVHALSELDVVGFDLVEVSPLMDTSERTAL
LAAKIVREAILSFVK"
misc_feature 260759..261577
/locus_tag="DSY0233"
/note="agmatinase; Region: agmatinase; TIGR01230"
/db_xref="CDD:233323"
misc_feature 260798..261574
/locus_tag="DSY0233"
/note="Agmatinase and related proteins; Region:
Agmatinase-like_2; cd11593"
/db_xref="CDD:212539"
misc_feature order(261062..261064,261131..261133,261137..261145,
261179..261184,261371..261373,261377..261379,
261503..261505)
/locus_tag="DSY0233"
/note="putative active site [active]"
/db_xref="CDD:212539"
misc_feature order(261062..261064,261131..261133,261137..261139,
261143..261145,261371..261373,261377..261379)
/locus_tag="DSY0233"
/note="Mn binding site [ion binding]; other site"
/db_xref="CDD:212539"
gene 261673..261748
/locus_tag="DSY_tRNA6-Val"
/db_xref="GeneID:3958070"
tRNA 261673..261748
/locus_tag="DSY_tRNA6-Val"
/product="tRNA-Val"
/db_xref="GeneID:3958070"
gene 261755..261830
/locus_tag="DSY_tRNA7-Asp"
/db_xref="GeneID:3958071"
tRNA 261755..261830
/locus_tag="DSY_tRNA7-Asp"
/product="tRNA-Asp"
/db_xref="GeneID:3958071"
gene 261838..261913
/locus_tag="DSY_tRNA8-Phe"
/db_xref="GeneID:3958072"
tRNA 261838..261913
/locus_tag="DSY_tRNA8-Phe"
/product="tRNA-Phe"
/db_xref="GeneID:3958072"
gene 261915..261989
/locus_tag="DSY_tRNA9-Gly"
/db_xref="GeneID:3958073"
tRNA 261915..261989
/locus_tag="DSY_tRNA9-Gly"
/product="tRNA-Gly"
/db_xref="GeneID:3958073"
gene 261997..262070
/locus_tag="DSY_tRNA10-Cys"
/db_xref="GeneID:3958016"
tRNA 261997..262070
/locus_tag="DSY_tRNA10-Cys"
/product="tRNA-Cys"
/db_xref="GeneID:3958016"
gene 262088..262176
/locus_tag="DSY_tRNA11-Leu"
/db_xref="GeneID:3958017"
tRNA 262088..262176
/locus_tag="DSY_tRNA11-Leu"
/product="tRNA-Leu"
/db_xref="GeneID:3958017"
gene 262182..262258
/locus_tag="DSY_tRNA12-Val"
/db_xref="GeneID:3958018"
tRNA 262182..262258
/locus_tag="DSY_tRNA12-Val"
/product="tRNA-Val"
/db_xref="GeneID:3958018"
gene 262408..263256
/locus_tag="DSY0234"
/db_xref="GeneID:3954090"
CDS 262408..263256
/locus_tag="DSY0234"
/note="similarity to COG0338 Site-specific DNA
methylase(Evalue: 2E-63)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516467.1"
/db_xref="GI:89892980"
/db_xref="GeneID:3954090"
/translation="MRTMMHKDRLVAPVVKWVGGKRQLLEDLTPLFPKRVMSYCEPFC
GGGAVLFKLQPDTAWVNDINSELIRMYEVIRDDVEELIRALGEHPNEEEHYYRVRDWD
RDKEKYGNLSKVQKAARVIYLNKTCYNGLFRVNNAGEFNTPFGHYKTPNIVNEHTLRA
VSAYFQRAQITFSSTDYAEVLAGVAKGTFVYLDPPYDPVSSTANFTGYAKGGFDRAEQ
IRLRECCDELDRRGIKFMLSNSATEFIKEQYGAYQITIVKAKRAINSNAAKRGQIDEV
VVRNYK"
misc_feature 262438..263247
/locus_tag="DSY0234"
/note="DNA adenine methylase (dam); Region: dam;
TIGR00571"
/db_xref="CDD:233028"
gene 263294..264550
/locus_tag="DSY0235"
/db_xref="GeneID:3954091"
CDS 263294..264550
/locus_tag="DSY0235"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516468.1"
/db_xref="GI:89892981"
/db_xref="REBASE:DhaYORF234P"
/db_xref="GeneID:3954091"
/translation="MFKKYDILSRIEAEGKFTISASQIKEYREPRLMAKFDHNINLPR
IFARNRLAILPISRGDYIISHFEAYQPFSSVDTSVTRVSLPPNLQSLSASHIPSEAIA
VNCALASGMLADFLEEKTLYATVSGRMGSGQFDFTIRNLRTQCPTEVAVSNSQIEIDA
ALEGVHSLSLLEAKRDLAEDFLVRQLYYPFRVWSGRVTKQVRPIFLVYSNGIFSLYEY
EFQDPNAYNSLVLVKHKNYSIEDTAIGAADLHDVAERTQLLQEPEIPFPQANSFERVI
NICELLSTQELSREQVTEEYAFDIRQTNYYTDAARYLGLVEKRYEEGRKPVYSLSSRG
KRIMQLSYQQRQLAFCEAILQHRVFRETFKLYMENGSLPDQNTIVSIMQQSDLYQIGS
MSTFVRRSTTVSGWLNWMLGLIGEEH"
gene 264751..266202
/locus_tag="DSY0236"
/db_xref="GeneID:3954092"
CDS 264751..266202
/locus_tag="DSY0236"
/note="similarity to COG1982 Arginine/lysine/ornithine
decarboxylases(Evalue: 1E-121)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516469.1"
/db_xref="GI:89892982"
/db_xref="GeneID:3954092"
/translation="MPSLRQSKAPVYEALLKYKSMRVVPFDVPGHKQGRGNPELTEFL
GEKCLSVDVNSMKPLDNLGHPVSVIKEGEELAAEAFGAHHAFFMVNGTTSAVQAMVMS
ACKLGEKIIMPRNVHRSAINALIISGAIPVYVNPGVNKELGIPLGMSVADVRKAIKEN
PDAKAILVNNPTYYGICSDLKTITELAHEHSMLVLVDEAHGTHFYFGENMPISAMAAG
ADMAAVSMHKTGGSLTQSSFLLIGKRLNVGRVRHMINLTQTTSASYLLLSSLDISRRN
LALNGQRIFDKALYLANYGRDEVNKLGGYYAFGKELNNGDSVYDFDCTKLSIHTRDIG
LAGIEVYDILRDDYGIQIEFGDIGNILAIISVGDRALALERLVSALAEIKRRYQRDKA
GMFDHEYINPVVVMGPQQAFYAQQRSLPIQESKGKVSGEFVMAYPPGIPILAPGEKIT
EDIIDYIAYSKAKGCFLTGTEDMDIENIKVVEE"
misc_feature 264751..266196
/locus_tag="DSY0236"
/note="Arginine/lysine/ornithine decarboxylases [Amino
acid transport and metabolism]; Region: LdcC; COG1982"
/db_xref="CDD:224893"
misc_feature 264778..265653
/locus_tag="DSY0236"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:241782"
misc_feature order(265024..265029,265036..265038,265255..265257,
265339..265341,265348..265350,265423..265425,
265432..265434)
/locus_tag="DSY0236"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 265432..265434
/locus_tag="DSY0236"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
misc_feature <265930..>266121
/locus_tag="DSY0236"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene 266205..267059
/locus_tag="DSY0237"
/db_xref="GeneID:3954093"
CDS 266205..267059
/locus_tag="DSY0237"
/EC_number="2.5.1.16"
/note="catalyzes the formation of spermidine from
putrescine and S-adenosylmethioninamine"
/codon_start=1
/transl_table=11
/product="spermidine synthase"
/protein_id="YP_516470.1"
/db_xref="GI:89892983"
/db_xref="GeneID:3954093"
/translation="MELWYTEEHTENVRFSIKVDRQLYSGQSEFQRIDVFESKEFGTF
FTLDGLMMVTQKDEFIYHDMIVHVPMATNPQIKDVLVIGAGDGGTVRELTRYDSIVNI
DMVEIDKLVVDVCKEYLPQTACKLEDPRVRLFFEDGLRFIRTKENSYDLIIVDSTDPF
GPGEGLFTKEFYGNCYKALKDDGILVNQHESPYYETYAQNMGRAHQRIKEFFPVCRVY
QAHIPTYPSGHWLFGFASKKYDPLIDIDEQAWNDLGIKTQYYNTEIHKGCFALPNYVK
EQLADAVE"
misc_feature 266205..267044
/locus_tag="DSY0237"
/note="spermidine synthase; Provisional; Region: PRK00811"
/db_xref="CDD:234843"
misc_feature 266436..266762
/locus_tag="DSY0237"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(266448..266468,266520..266525,266610..266618,
266667..266669)
/locus_tag="DSY0237"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 267289..267723
/locus_tag="DSY0238"
/db_xref="GeneID:3954094"
CDS 267289..267723
/locus_tag="DSY0238"
/note="similarity to COG2703 Hemerythrin"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516471.1"
/db_xref="GI:89892984"
/db_xref="GeneID:3954094"
/translation="MIVMLKWKDEYSIGVEEIDEQHKHLFEIGNEIYDLLENYLLPDK
YDKIIQIIAELKEYTVHHFQTEEELMLKIKYPGYFKQKVAHDDFIKEVESVDFSAIDQ
DQDGHTRKLLEFIFGWVLDHILKSDAILALRVLCRYTLVKGK"
misc_feature 267334..267681
/locus_tag="DSY0238"
/note="Hemerythrin; Region: Hemerythrin; cd12107"
/db_xref="CDD:213982"
misc_feature order(267352..267354,267472..267474,267484..267486,
267529..267531,267541..267543,267652..267654,
267667..267669)
/locus_tag="DSY0238"
/note="Fe binding site [ion binding]; other site"
/db_xref="CDD:213982"
gene 267963..268838
/locus_tag="DSY0239"
/db_xref="GeneID:3954095"
CDS 267963..268838
/locus_tag="DSY0239"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516472.1"
/db_xref="GI:89892985"
/db_xref="GeneID:3954095"
/translation="MEQHSVQVGTQYYRESIYERLRQLQEQEKLPVVLHEYQQGKHWL
IDCEFQLEAIEEDRETTKKIHSYYLANAIAETILQHWEKDHIRWLLKSKYKLKREEVV
QVFEKSLQYLNQESRQWKNYRIHRKASLVNQIVKCIEAQPFFDMEGFLRFRAKDYKEE
IYRAVNYVVNEHVIEAEYEEFINLLKRFVDSQKPRIHTLHVGITKHGKFNLYNEEGKK
ITKKYMDELSFMDTSQELTYEDLLVSALIAVAPRKIVLHIRYEGYQDTLQTICKVFEG
RVSYCTESCPICEKI"
misc_feature 268161..268802
/locus_tag="DSY0239"
/note="YtxC-like family; Region: YtxC; pfam08812"
/db_xref="CDD:220029"
gene 269169..271094
/gene="thrS"
/locus_tag="DSY0240"
/db_xref="GeneID:3954096"
CDS 269169..271094
/gene="thrS"
/locus_tag="DSY0240"
/EC_number="6.1.1.3"
/note="catalyzes a two-step reaction, first charging a
threonine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; catalyzes the formation
of threonyl-tRNA(Thr) from threonine and tRNA(Thr)"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_516473.1"
/db_xref="GI:89892986"
/db_xref="GeneID:3954096"
/translation="MTMMVKITLKDGSIREIESGKSLMELAASISRGLAKAALAGKVN
GEVKDLSYALTQDAEVEIITADSEEGLKILRHSTSHLMAEAVRNLFPGTILGIGPAID
NGFYYDFDSEHVFTPEDLEKIEAEMRRLVKENKRYERKEISRSDALQYFSAEGEKYKV
ELIEDLPEDEVISMYTQGGFTDLCAGPHIPSTGVVKAFKLMNLAGAYWRGSEKNKMLQ
RIYGTVWAKKEDLDDYLFKLEEAKRRDHRKLGVELDLFSLHDEGPGFPFFHPKGMVLR
NQLEDFWRQEHRKRGYHEIKTPIILSRNLWENSGHWDHYKDNMYTTKIDDEDFAVKPM
NCPGGMIMYKQKLRSYRDLPLRMGELGLVHRHELSGALNGLLRVRNFTQDDAHIFMLP
SQIKAEISGVIDLVDRFYKVFGFEYHVELSTRPENSMGADETWEMATNALQEALEAKG
VNYKINPGDGAFYGPKIDFHLRDCLGRTWQCGTIQLDFQMPEKFDLTYIGEDGQKHRP
VMIHRVVYGSIERFIALLTEHYAGAFPTWLAPVQVRVLPISERHEDYAQDIVRRLNDL
DIRAEVDERREKISYKIREAQTHKIPFALVVGDQEAETDTVAVRRYGQANAGEKLSVA
EFIALIQEEICSKKQLV"
misc_feature 269178..271085
/gene="thrS"
/locus_tag="DSY0240"
/note="threonyl-tRNA synthetase; Reviewed; Region: thrS;
PRK00413"
/db_xref="CDD:234752"
misc_feature 269181..269363
/gene="thrS"
/locus_tag="DSY0240"
/note="TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is
a class II tRNA synthetase that couples threonine to its
cognate tRNA. In addition to its catalytic and
anticodon-binding domains, ThrRS has an N-terminal TGS
domain, named after the ThrRS, GTPase, and...; Region:
TGS_ThrRS_N; cd01667"
/db_xref="CDD:133437"
misc_feature 269682..269831
/gene="thrS"
/locus_tag="DSY0240"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; pfam07973"
/db_xref="CDD:219676"
misc_feature 269901..270788
/gene="thrS"
/locus_tag="DSY0240"
/note="Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is responsible
for the attachment of threonine to the 3' OH group of
ribose of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ThrRS_core;
cd00771"
/db_xref="CDD:238394"
misc_feature order(269910..269912,269949..269951,270099..270101,
270111..270113,270120..270125,270165..270167,
270261..270263,270267..270269,270273..270281,
270294..270302,270309..270311,270315..270317,
270597..270599,270606..270611,270621..270623,
270717..270722,270729..270731)
/gene="thrS"
/locus_tag="DSY0240"
/note="active site"
/db_xref="CDD:238394"
misc_feature order(269922..269924,269940..269942,269946..269951,
269955..269957,269961..269963,269967..269972,
269976..269978,269985..269987,270030..270035,
270045..270050,270054..270056,270060..270068,
270072..270074,270126..270134,270138..270149,
270153..270155,270189..270194,270201..270209,
270213..270221,270258..270260,270264..270266,
270273..270275,270303..270308,270387..270389,
270510..270518,270663..270665,270669..270671)
/gene="thrS"
/locus_tag="DSY0240"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238394"
misc_feature 270045..270068
/gene="thrS"
/locus_tag="DSY0240"
/note="motif 1; other site"
/db_xref="CDD:238394"
misc_feature 270258..270269
/gene="thrS"
/locus_tag="DSY0240"
/note="motif 2; other site"
/db_xref="CDD:238394"
misc_feature 270717..270731
/gene="thrS"
/locus_tag="DSY0240"
/note="motif 3; other site"
/db_xref="CDD:238394"
misc_feature 270786..271061
/gene="thrS"
/locus_tag="DSY0240"
/note="ThrRS Threonyl-anticodon binding domain. ThrRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
ThrRS_anticodon; cd00860"
/db_xref="CDD:238437"
misc_feature order(270810..270815,270918..270920,270936..270938,
270960..270962,270990..270992,270996..270998)
/gene="thrS"
/locus_tag="DSY0240"
/note="anticodon binding site; other site"
/db_xref="CDD:238437"
gene 271521..272384
/locus_tag="DSY0241"
/db_xref="GeneID:3953224"
CDS 271521..272384
/locus_tag="DSY0241"
/note="similarity to COG2510 Predicted membrane
protein(Evalue: 2E-25)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516474.1"
/db_xref="GI:89892987"
/db_xref="GeneID:3953224"
/translation="MWIVYAFGSAFFAGITAILAKCGIKKTDSNMATAIRTIVVLAFS
WLMVLMVESHTTIGDISGKTLLFLILSGLATGASWLCYFKALQMGDINKVVPIDKSST
VLTIILAFILLNEGISIGKGVGVVGIGIGTYLMIQKKATEAAQPKANQAWLIYALLSA
VFASLTAILGKIGIEGVESNLGTAIRTGVVLVMAWLVVFVTRKKGISREIPLKELGFI
ILSGLATGGSWLCYYKALQDGPASVVVPIDKLSILVTIAFSYVVFHEKLAKKAALGLV
LIVSGTLAMLI"
misc_feature 271524..271865
/locus_tag="DSY0241"
/note="Predicted membrane protein [Function unknown];
Region: COG2510"
/db_xref="CDD:225308"
misc_feature 271968..272369
/locus_tag="DSY0241"
/note="Predicted membrane protein [Function unknown];
Region: COG2510"
/db_xref="CDD:225308"
gene complement(272432..273421)
/locus_tag="DSY0242"
/db_xref="GeneID:3953225"
CDS complement(272432..273421)
/locus_tag="DSY0242"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516475.1"
/db_xref="GI:89892988"
/db_xref="GeneID:3953225"
/translation="MNKIRIGIVGYGNLGKSVELGIRQNEDMELVGVFTRRDPSSIKT
VTPGVNVFTMDESKQMTEQIDVMVLCGGSMSDMPVQGPEFASLFNTVDGYDTHARIPE
YFAAMDKNALESQKVCIIASGWDPGMFSINRLYAEAILPAGDTYTFWGKGISQGHSDA
LRRIKGVKDAKQYTIPKDQAINAVRRGEMPELSTREKHWRECFVVLEEGADKERIKQE
IKTMPNYFADYDTEVHFITEEELIKDHPGLPHGGLVIHHGRTGLDEKHHHVIEYRLAL
DSNPDFTANVLVAFARAAYRLNREGVSGAKTVVDIAPAYLSSKSAEELRRSLI"
misc_feature complement(272435..273421)
/locus_tag="DSY0242"
/note="diaminopimelate dehydrogenase; Region: DAP-DH;
TIGR01921"
/db_xref="CDD:233638"
misc_feature complement(<273218..273412)
/locus_tag="DSY0242"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:216304"
gene 273723..275459
/locus_tag="DSY0243"
/db_xref="GeneID:3953226"
CDS 273723..275459
/locus_tag="DSY0243"
/note="catalyzes the formation of acetyl phosphate and
sulfite from 2-sulfoacetaldehyde; is active when grown on
taurine as a sole carbon source"
/codon_start=1
/transl_table=11
/product="sulfoacetaldehyde acetyltransferase"
/protein_id="YP_516476.1"
/db_xref="GI:89892989"
/db_xref="GeneID:3953226"
/translation="MPKITMTPSEAICETLVAEGIDHVTGIVGSAFMDLLDLFPTAGI
RFIPVRHEQSAGHMEDAFCRVTGRAGVIIGQNGPGITNMVTSVAAANSAHTPMVVICP
SAGTPTVGWDGFQEADTVKIFEAITKETIRVPHPSRAADCLRTAFRIAYAERGPVLYD
IPRDYFYGEISEQILEPHQYRVDQRGCGDLASLDKAAELLISAQRPVIISGRGVVDTQ
SKDIVAKIAEILTAPVACTYLHNDAFPYDHPLWVGPIGYMGSKAAMNLVAEADVILAI
GTRLSVFGTTPQYDIDYFPESAKIIQVDINPRNIARTHPVEVGLIADAREAAREILKR
LEERIAEPKVSQSRLTQIKAQQNAWEEEIVQSAMVDGYPINPRRALYEIQKALPENAI
VATDIGNVSSTANSYLKFKGAGKHIAALTFGNTGFAYPAALGAQLAEPDSPVVAIIGD
GAWGMSLHEVSTAVEHNLPVVAIVFRNGAWCAEKKNQIDFYNNRFVGVDIPTPESFAP
VAIAMGAEGIRVSKAEEVGPALKRALDSRKPTVLEIVCDGTQLAPPFRKDALKLPTRL
LPKYKSLDVRNW"
misc_feature 273723..275444
/locus_tag="DSY0243"
/note="sulfoacetaldehyde acetyltransferase; Validated;
Region: PRK07525"
/db_xref="CDD:236042"
misc_feature 273750..274211
/locus_tag="DSY0243"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature order(273789..273791,273804..273809,273819..273821,
273831..273833,273855..273875,273882..273884,
273891..273896,273903..273908,273912..273920,
273954..273956,273975..273977,273987..273989,
273996..274001)
/locus_tag="DSY0243"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(273804..273812,273819..273821,273831..273833,
273858..273860,273864..273875,273879..273881,
273954..273956,273963..273968,273972..273977,
273984..273986,274086..274088,274095..274097)
/locus_tag="DSY0243"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(273804..273806,273876..273878,273954..273956,
273966..273968)
/locus_tag="DSY0243"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature 274299..274715
/locus_tag="DSY0243"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:215786"
misc_feature 274833..275417
/locus_tag="DSY0243"
/note="Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and...; Region:
TPP_enzymes; cl01629"
/db_xref="CDD:242611"
misc_feature order(274995..274997,275067..275078,275151..275153,
275157..275159)
/locus_tag="DSY0243"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:238318"
gene 275641..277092
/locus_tag="DSY0244"
/db_xref="GeneID:3953227"
CDS 275641..277092
/locus_tag="DSY0244"
/note="similarity to COG1012 NAD-dependent aldehyde
dehydrogenases(Evalue: 2E-58)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516477.1"
/db_xref="GI:89892990"
/db_xref="GeneID:3953227"
/translation="MGASTSANKNTSGETDAKIIVEELILKARKAMAEIQNYSQDQAN
TLVQAVAWAIYRQDHAEELARISVQDTGLGNVKDKITKNKRKTFGTLRDLLAPEAKSV
GIIKVDEAIGITEIAKPVGVIAAAVPSTNPGATPANVTMMGLKGRNAVIIAPSPKGAS
TTVKLLEYIHAELAKVGAPLDLVQSLPMPVSKELTTELMKQADMVTVTGSANNVRAGQ
TCGTPNACVSAGNVVTIVDASANLQDAAHKIMLSKTFDNATSCSSDNALVIEAAIYEQ
MIEALKKEGGYKCTVAEKEQMQKAMWDENGKRRGKTTAKDAGVMAQEAGLTNPAAQKA
SFFMVEETGVGKGYPFSGEKIALVLTLYKAGDFDEALELTKRILNHAGRGHSCGLHTT
NEEHIQRIGLEMEVCRLLINQIQCFGNGGSFNNGLNFTLSMGGGTWAGNNIKDNLSYQ
HFIQTTKVSRLIPEVIPEEEELFGSYWAKYGRS"
misc_feature 275701..277020
/locus_tag="DSY0244"
/note="Coenzyme A acylating aldehyde dehydrogenase (ACDH),
ALDH family 20-like; Region: ALDH_F20_ACDH; cd07122"
/db_xref="CDD:143440"
misc_feature 276421..276423
/locus_tag="DSY0244"
/note="putative catalytic cysteine [active]"
/db_xref="CDD:143440"
gene 277107..278225
/locus_tag="DSY0245"
/db_xref="GeneID:3953228"
CDS 277107..278225
/locus_tag="DSY0245"
/note="similarity to COG0045 Succinyl-CoA synthetase beta
subunit(Evalue: 1E-67)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516478.1"
/db_xref="GI:89892991"
/db_xref="GeneID:3953228"
/translation="MKLFEYQAKELFAESGIPIPQNALIGDISELNSALEKLGLPCVL
KAQVLQGGRGKAGLVKFVRTKEEAQKEAERILEATGKKLLVEEAVPYEREMYVSITVD
AASGLAMVMACLEGGVDIEQIARTTPEKIIKEKVDMSLGLMAYQADNIMYGLGLEQSA
AKEGSKILLKLYQLFVKYNAELVEINPLMILRDGTMAAADGKFNLDDNALYKQNRFSL
TRDHYKSDFEYEAALDGIPYIAFEGDIGMMVAGAGLANVVLDLIHYYGGTVANYLEFG
GPNYHKAQQCMKMMLKAKPKCILIATFGTIARADVMAQGIVEAVKELKPEIPIVAVIR
GTGEEDAQKLLRSAGLPSLSDTEEAVRKAVEIVGGAEN"
misc_feature 277107..278216
/locus_tag="DSY0245"
/note="succinyl-CoA synthetase subunit beta; Provisional;
Region: sucC; PRK00696"
/db_xref="CDD:234813"
misc_feature 277110..277676
/locus_tag="DSY0245"
/note="ATP-grasp domain; Region: ATP-grasp_2; pfam08442"
/db_xref="CDD:219843"
misc_feature 277848..278195
/locus_tag="DSY0245"
/note="CoA-ligase; Region: Ligase_CoA; pfam00549"
/db_xref="CDD:215988"
gene 278534..279100
/locus_tag="DSY0246"
/db_xref="GeneID:3953229"
CDS 278534..279100
/locus_tag="DSY0246"
/note="similarity to COG0074 Succinyl-CoA synthetase alpha
subunit(Evalue: 3E-45)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516479.1"
/db_xref="GI:89892992"
/db_xref="GeneID:3953229"
/translation="MMQLRKIALEKQAMVIGGNTTGIISTGKAMMGFFPYWLDRVYKP
GRVGVMTRSGSLTNEVTAEIVKAGFGPSSIVGVGGDPVPLTRFAEILPLFEKDPDTDA
VVMIGEIGGTMEEDVAEAIEQRIFTKPLIGFMGGRTAPKGQKMGHAGAIITAGKGTVE
DKVEALAKAGALVADRPSMIGQLLQKVL"
misc_feature 278681..279049
/locus_tag="DSY0246"
/note="CoA-ligase; Region: Ligase_CoA; pfam00549"
/db_xref="CDD:215988"
gene 279253..280749
/locus_tag="DSY0247"
/db_xref="GeneID:3953230"
CDS 279253..280749
/locus_tag="DSY0247"
/note="similarity to COG0471 Di- and tricarboxylate
transporters(Evalue: 4E-57)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516480.1"
/db_xref="GI:89892993"
/db_xref="GeneID:3953230"
/translation="MSINSPVVPSRPYVFNKRNALIFFAAIAVMLIIYLLPSPPSFYK
GTEEIPLTFEGKAVFAVLVYAVILWLTEAIPFPITALSMIIILHLMGVSTFTALVKTG
LGSSVLFFLMGAMGLSAAITVSGLANRIMLGVLSKVGTRTDRIVFTFMALGTFLSMWV
TDMAVAAMLLPLGVNILRQSGCKPLQSNFGRCLMIGIVYGALIGGTSTPAGCGANILA
ISYLRELTEADASFLQWMIVGVPGALMMLPAGWFLLMKVFPPEIRNVPIELDDVRRQN
KELGPLTRQERNTTIVFFTAVTMWLGAPLIKSLTGISIPEDFTALFAFLLLFLPGLQV
FGSWKEANEHIDWSGLMLIAGGIAAGMLLAETGTARYIAWGALNGIGALHPMLRVAAV
LVLVEALKIFFSSNSVTGAVVIPLVIALALDLGMNPWIVAGPAGIATSMAFIMVTSSP
TNVIPYSSGYFSIKDFAKCGVLMTVIGIVAVTLSVAIFGRFAGMNIWL"
misc_feature 279313..280716
/locus_tag="DSY0247"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:223547"
misc_feature 279427..280719
/locus_tag="DSY0247"
/note="Permease SLC13 (solute carrier 13). The
sodium/dicarboxylate cotransporter NaDC-1 has been shown
to translocate Krebs cycle intermediates such as
succinate, citrate, and alpha-ketoglutarate across plasma
membranes rabbit, human, and rat kidney. It is...; Region:
SLC13_permease; cd01115"
/db_xref="CDD:238535"
misc_feature order(279448..279459,279478..279519,279565..279618,
279688..279738,279742..279795,279823..279894,
279958..279975,279988..280014,280027..280029,
280120..280155,280177..280194,280225..280251,
280285..280341,280414..280461,280516..280575,
280663..280701)
/locus_tag="DSY0247"
/note="transmembrane helices; other site"
/db_xref="CDD:238535"
gene 280950..281666
/locus_tag="DSY0248"
/db_xref="GeneID:3953231"
CDS 280950..281666
/locus_tag="DSY0248"
/note="similarity to COG2188 Transcriptional
regulators(Evalue: 4E-31)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516481.1"
/db_xref="GI:89892994"
/db_xref="GeneID:3953231"
/translation="MVLDPHNPLPLHAQITNILRKRIFEENLTGKIPSERELMDYFAV
SRSTVREAIEALVRDGILEKKHGKGTFVAVRPIKEEWIGTFSSYTETIERAGMRSGAK
LLSCNIKREPAYIAEMFGGEEFYMIKRLRYANDQVIAIERKCFDLETGRRLLDYDLNA
NIYKIMESSLGIVLWEADEIVTSAIPSKEDALLLEVPKRSSVLVTERSSFDSDHKLIE
FVQTMFRADKYSFRIKMSRN"
misc_feature 280971..281648
/locus_tag="DSY0248"
/note="Transcriptional regulators [Transcription]; Region:
PhnF; COG2188"
/db_xref="CDD:225099"
misc_feature 280977..281168
/locus_tag="DSY0248"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(280977..280979,280983..280985,281046..281048,
281052..281057,281079..281093,281097..281102,
281109..281111,281139..281144,281148..281159)
/locus_tag="DSY0248"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 281229..281639
/locus_tag="DSY0248"
/note="The UbiC transcription regulator-associated (UTRA)
domain is a conserved ligand-binding domain; Region: UTRA;
smart00866"
/db_xref="CDD:214869"
gene 281833..282489
/locus_tag="DSY0249"
/db_xref="GeneID:3953232"
CDS 281833..282489
/locus_tag="DSY0249"
/note="similarity to COG1410 Methionine synthase I,
cobalamin-binding domain(Evalue: 1E-25)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516482.1"
/db_xref="GI:89892995"
/db_xref="GeneID:3953232"
/translation="MHNVADLVENVIQGNAKESVSIARDLLAKGYRINQLVEGLTTAL
DSLDAKCNMNQFNLLEILLAARAMKEVVDEVVCPEMEKLPAEFGPLQLKGVFVMGTIQ
GDIHDLGKNIVTTLLRTVGYKVIDLGKDVSPAQFVMAAKAEKADFIGVSSLIFSSAAV
IREIKRLLREEKMSDIMVIAGGAAVKQLGKEDLDVDMIAKDAFELIRFLQAHEGNVAE
"
misc_feature 281851..282465
/locus_tag="DSY0249"
/note="B12 binding domain (B12-BD). Most of the members
bind different cobalamid derivates, like B12
(adenosylcobamide) or methylcobalamin or methyl-Co(III)
5-hydroxybenzimidazolylcobamide. This domain is found in
several enzymes, such as glutamate mutase; Region:
B12-binding_like; cl00293"
/db_xref="CDD:241759"
misc_feature 281851..282444
/locus_tag="DSY0249"
/note="methyltransferase cognate corrinoid proteins,
Methanosarcina family; Region: pyl_corrinoid; TIGR02370"
/db_xref="CDD:131423"
misc_feature order(282277..282285,282289..282297,282379..282381,
282427..282429,282436..282438,282445..282447)
/locus_tag="DSY0249"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:239016"
gene 282621..283490
/locus_tag="DSY0250"
/db_xref="GeneID:3953233"
CDS 282621..283490
/locus_tag="DSY0250"
/note="similarity to COG0407 Uroporphyrinogen-III
decarboxylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516483.1"
/db_xref="GI:89892996"
/db_xref="GeneID:3953233"
/translation="MAQCQLDSQQKFDYDAVFVYGDNCIEAEALGSRVYFPENAYPYI
EKYRLEDPRQLKDLPDFNPSTDGRMPELLRAVALLKTELGDSLPIAGVVLGPMSIASQ
LMGLERLLYLLLDSPCEFADIIRFASGITLKAGLALLAQGAHISAVIDPSASQSILPS
EMFGRYLLPTIRDIFSQFKGAGAMASWLVITGNSQGLLPYYRQCGVDIAGIDYEVPLA
EALKWEGDFLISGNIKPYRFVNQTPQEIIREGKELISLAAGRRFILSSGCEVPLDTKP
ENLAALIKAVRDV"
misc_feature 282621..283484
/locus_tag="DSY0250"
/note="The URO-D _like protein superfamily includes
bacterial and eukaryotic uroporphyrinogen decarboxylases
(URO-D), coenzyme M methyltransferases and other putative
bacterial methyltransferases. Uroporphyrinogen
decarboxylase (URO-D) decarboxylates the four...; Region:
URO-D_like; cd03465"
/db_xref="CDD:239548"
gene 283483..284793
/locus_tag="DSY0251"
/db_xref="GeneID:3953234"
CDS 283483..284793
/locus_tag="DSY0251"
/note="similarity to COG0642 Signal transduction histidine
kinase(Evalue: 1E-33)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516484.1"
/db_xref="GI:89892997"
/db_xref="GeneID:3953234"
/translation="MCDRMDVKQNTALSSEEELKKQIAALHKINNMTGFLPIKIEELL
PAIKEVMEDIFADYQCNFNIFPKRHGCNRLELGDCKAIRDQLPMISDQDQTCPCCTGE
ACRGIFHSHVCVPLVSGKEVFGVMTLKSLLKVRLSRDSLEMLLAIANQVAATLQRSQL
LNRLAQEKNNLEEANQEITQLNRSLFDTIKELEKTQRQLIYSERLAAAGRLAANLTHE
INNPTGIILSRLEWLLLEAPETELPEEVVKDLLVIKKHTERIAQTTRGLLSFSRRTKN
ETTLVDLENLIKETVVWLERQFSRKDIIIVLNLSRLPTVIGNKDQLEQVLVNILTNAK
DALPEGGKIKITTKYDTEKNNVQIDIEDNGTGIPEDMMNSIFDPFFSTKEKELGTGLG
LPISLTIMKEHGGFLRMESTPHEGSCFSMILPCVPENQEGDLNE"
misc_feature <283705..283983
/locus_tag="DSY0251"
/note="FOG: GAF domain [Signal transduction mechanisms];
Region: FhlA; COG2203"
/db_xref="CDD:225113"
misc_feature <283717..283974
/locus_tag="DSY0251"
/note="Domain present in phytochromes and cGMP-specific
phosphodiesterases; Region: GAF; smart00065"
/db_xref="CDD:214500"
misc_feature 283849..284775
/locus_tag="DSY0251"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature 284446..284751
/locus_tag="DSY0251"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(284464..284466,284476..284478,284485..284487,
284560..284562,284566..284568,284572..284574,
284578..284583,284650..284661,284707..284709,
284713..284715,284728..284733,284737..284739)
/locus_tag="DSY0251"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 284476..284478
/locus_tag="DSY0251"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(284572..284574,284578..284580,284650..284652,
284656..284658)
/locus_tag="DSY0251"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 284786..286171
/locus_tag="DSY0252"
/db_xref="GeneID:3953235"
CDS 284786..286171
/locus_tag="DSY0252"
/note="similarity to COG2204 Response regulator containing
CheY-like receiver, AAA-type ATPase, and DNA-binding
domains(Evalue: 1E-101)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516485.1"
/db_xref="GI:89892998"
/db_xref="GeneID:3953235"
/translation="MSEDRHIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEI
YRLQPDLIITDIKMPQCDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDY
LSKPFPIEQLQLTINKALQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIG
KISNSDASILILGESGTGKEVIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYE
RGAFTGANTTKQGLLEMAHGGTLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLIN
IDIRVLAATNRDLEKAIRAKEFREDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKF
SQDMNKKVSGFTPEAMQAMKSYAWPGNIRELRNVVERAISLSGSEMVEISDLPEKVIG
GQKKILPEQENLGAFSFHEAKDICLKRFEMEYLKELLDKHHGNITQAAKSAGMDRKTI
HRLINKYDLQR"
misc_feature 284786..286168
/locus_tag="DSY0252"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:225114"
misc_feature 284810..285145
/locus_tag="DSY0252"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(284816..284821,284948..284950,284972..284974,
285032..285034,285089..285091,285098..285103)
/locus_tag="DSY0252"
/note="active site"
/db_xref="CDD:238088"
misc_feature 284948..284950
/locus_tag="DSY0252"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(284957..284962,284966..284974)
/locus_tag="DSY0252"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 285098..285106
/locus_tag="DSY0252"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 285272..285712
/locus_tag="DSY0252"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 285302..285325
/locus_tag="DSY0252"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(285305..285328,285515..285517,285641..285643)
/locus_tag="DSY0252"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 285503..285520
/locus_tag="DSY0252"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 285698..285700
/locus_tag="DSY0252"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 286034..286156
/locus_tag="DSY0252"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene complement(286172..286723)
/locus_tag="DSY0253"
/db_xref="GeneID:3953236"
CDS complement(286172..286723)
/locus_tag="DSY0253"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516486.1"
/db_xref="GI:89892999"
/db_xref="GeneID:3953236"
/translation="MGKATIKIIFSLAASLVLFVSGCSSGQEPGSAPITPQEKPEIEV
FSKTMELNKIVDLDTMKLRIINVSLVRNTDPDPDAPLGKIALGIEIGNTSDKDVLFYP
EDFEMTIDGKEIASPDLTLTSSLGGTYPPQRVQQGFITFPIKEKEVTSVKELHLTIPP
TTDQDGIATEAKEYTILIDDLEA"
gene 287109..288314
/locus_tag="DSY0254"
/db_xref="GeneID:3953237"
CDS 287109..288314
/locus_tag="DSY0254"
/note="similarity to COG0577 ABC-type transport systems,
involved in lipoprotein release, permease components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516487.1"
/db_xref="GI:89893000"
/db_xref="GeneID:3953237"
/translation="MMFAKLIWRNAKRRPWQQGLTLFVVVACAAALTAGILLVWGIEK
GGQSAVDNLGADVMAIPADAHLEPGQVLFTGAPANIYMNSEVLKEIEKVPGVEAISAQ
FFSQTLNQGCCSLPEEYRLVGYDPQTDFLIRDLLAKGVGRDLKNTEVIVGGNVPAFLG
DRVVVLAEPFDVAGYLEPMGGSIDDTIFVPIATARRLAGKSPYLQEYWQEAGSPEQLV
SSVLIKTKDGADPNQVAKAIDRISGIKSVAAGKLFSELKEELLVIKEILRLLVVIICG
ITMASLASRYSSLVLERQQELALLRALGTERGNLFKLVMLETLCSGLAAAVMGCLAGY
GLVLYLAKSLSKHSSFPFMLPGAAQLCAAGLGIIAFVLLICCLAAFWPARSSSRLDPV
TALTEGELR"
misc_feature 287130..287831
/locus_tag="DSY0254"
/note="MacB-like periplasmic core domain; Region:
MacB_PCD; pfam12704"
/db_xref="CDD:221725"
misc_feature 287313..288293
/locus_tag="DSY0254"
/note="ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane]; Region: LolE; COG4591"
/db_xref="CDD:226957"
misc_feature 287937..288281
/locus_tag="DSY0254"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:217187"
gene 288323..289036
/locus_tag="DSY0255"
/db_xref="GeneID:3953238"
CDS 288323..289036
/locus_tag="DSY0255"
/note="similarity to COG1136 ABC-type transport systems,
involved in lipoprotein release, ATPase components(Evalue:
2E-44)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516488.1"
/db_xref="GI:89893001"
/db_xref="GeneID:3953238"
/translation="MEISLKNITHYYRDGTGDQVTPLRNIDLTMRSGDSLVLYGPSGC
GKSTLLFILGCLLRPSEGQVDIDGRSLLHYGEKELAELRNRKMGFMFQACYLLPTLTV
KENIMLPFWIQGGKARDGRTEKKTVELLLEQLELTERADFLPYQLSGGQRRRVAMARA
LANDPEVILADEPTAELDEEKKDFVGKWLGEQAGKKKIVVVATHDPQLAVYAGRVYSL
SQGQLQEKILGKGAVYSSG"
misc_feature 288329..289006
/locus_tag="DSY0255"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:224059"
misc_feature 288329..288991
/locus_tag="DSY0255"
/note="ATP-binding cassette domain of the transporters
involved in export of lipoprotein and macrolide, and cell
division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
/db_xref="CDD:213222"
misc_feature 288440..288463
/locus_tag="DSY0255"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213222"
misc_feature order(288449..288454,288458..288466,288596..288598,
288833..288838,288932..288934)
/locus_tag="DSY0255"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213222"
misc_feature 288587..288598
/locus_tag="DSY0255"
/note="Q-loop/lid; other site"
/db_xref="CDD:213222"
misc_feature 288761..288790
/locus_tag="DSY0255"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213222"
misc_feature 288821..288838
/locus_tag="DSY0255"
/note="Walker B; other site"
/db_xref="CDD:213222"
misc_feature 288845..288856
/locus_tag="DSY0255"
/note="D-loop; other site"
/db_xref="CDD:213222"
misc_feature 288920..288940
/locus_tag="DSY0255"
/note="H-loop/switch region; other site"
/db_xref="CDD:213222"
gene 289068..289523
/locus_tag="DSY0256"
/db_xref="GeneID:3953239"
CDS 289068..289523
/locus_tag="DSY0256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516489.1"
/db_xref="GI:89893002"
/db_xref="GeneID:3953239"
/translation="MEVKLLNGKVTKVIGGLGAALGLLIALTPFQLAPVCQRLLELTS
GKMTHMRCHYTGQGEVFLGIVVVLVSLIYLFNTSIPAQKALGGVLMILGCAVIILPTN
LGIGVCMNPMECHTTARVLYVLGSLTIIDGLVAVFQEKLPVSPSKDIKA"
misc_feature 289149..289487
/locus_tag="DSY0256"
/note="Domain of unknown function (DUF4418); Region:
DUF4418; pfam14387"
/db_xref="CDD:222726"
gene 290142..290588
/locus_tag="DSY0257"
/db_xref="GeneID:3953240"
CDS 290142..290588
/locus_tag="DSY0257"
/note="similarity to COG0723 Rieske Fe-S protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516490.1"
/db_xref="GI:89893003"
/db_xref="GeneID:3953240"
/translation="MENNNKGEISRRKFLGIMTGVPLVLSVGTPAVAVGKMISPPEAL
RPLPPRMAILKEDELLEKPKEIIYDGLPAMIFKKGNEYRAFSRVCTHLGCTVMWNEAE
KRFECPCHGGIFDEDGNVLEGPPPKPLTRLRAWVEDGYVMVQREVV"
misc_feature <290403..290570
/locus_tag="DSY0257"
/note="Rieske domain; a [2Fe-2S] cluster binding domain
commonly found in Rieske non-heme iron oxygenase (RO)
systems such as naphthalene and biphenyl dioxygenases, as
well as in plant/cyanobacterial chloroplast b6f and
mitochondrial cytochrome bc(1) complexes; Region: Rieske;
cl00938"
/db_xref="CDD:242206"
misc_feature order(290406..290408,290412..290417,290460..290462,
290466..290471,290475..290477,290481..290483)
/locus_tag="DSY0257"
/note="iron-sulfur cluster [ion binding]; other site"
/db_xref="CDD:239550"
misc_feature order(290406..290408,290412..290417,290460..290462,
290469..290471,290475..290477)
/locus_tag="DSY0257"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:239550"
gene 290560..291228
/locus_tag="DSY0258"
/db_xref="GeneID:3953241"
CDS 290560..291228
/locus_tag="DSY0258"
/note="similarity to COG1290 Cytochrome b subunit of the
bc complex(Evalue: 5E-49)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516491.1"
/db_xref="GI:89893004"
/db_xref="GeneID:3953241"
/translation="MSWCKGRLFSVAIEPKEVGVKDMFKEIAEHPVPRHARNFIFCFG
GISFLLFLVQVVTGIVLAVYYNPTMEGAYQSVMFINDEVFMGKALRSVHNIAANLMLI
MVVLHFLRVVFTGAYKPPRQFNWVVGVLLLLLVILFCFIGYLLPLDQVGYWAAIIGTK
ILGSIPIVGDQLLLLGQAGTKITDHTLMRFFIIHIVVLPVVVIVLLIAHFLMIRKQGI
SGPL"
misc_feature 290617..291225
/locus_tag="DSY0258"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cl00859"
/db_xref="CDD:242146"
misc_feature 290617..>291225
/locus_tag="DSY0258"
/note="Cytochrome b subunit of the bc complex [Energy
production and conversion]; Region: QcrB; COG1290"
/db_xref="CDD:224209"
misc_feature order(290656..290658,290665..290667,290725..290727,
290737..290739,290746..290751,290776..290781,
290788..290793,290800..290814,290818..290826,
290833..290835,290917..290919,291199..291204)
/locus_tag="DSY0258"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:238176"
misc_feature order(290659..290667,290680..290685,290692..290697,
290704..290706,290776..290778,290821..290823,
290830..290835,290842..290847,290851..290856,
290860..290865,290872..290874,290893..290910,
290920..290925,290932..290937,290944..290946,
290953..290958,290986..290988,290998..291018,
291028..291033,291055..291057,291214..291216)
/locus_tag="DSY0258"
/note="intrachain domain interface; other site"
/db_xref="CDD:238176"
misc_feature order(290680..290682,290689..290694,290698..290703,
290857..290859,290869..290871,290878..290883,
290887..290889,290929..290934,290941..290946,
290950..290955,291172..291174,291184..291189,
291196..291198,291211..291216)
/locus_tag="DSY0258"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:238176"
misc_feature order(290692..290694,290701..290703,291187..291189,
291211..291213)
/locus_tag="DSY0258"
/note="Qi binding site; other site"
/db_xref="CDD:238176"
misc_feature order(290710..290712,290719..290724,290731..290736,
290740..290745,290752..290754,290785..290787,
290827..290829,290836..290841,290848..290850,
290971..290976,290983..290988,290992..290997,
291139..291144,291151..291153)
/locus_tag="DSY0258"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:238176"
misc_feature order(290956..290958,290965..290970,290977..290982,
291019..291021,291028..291033,291043..291045,
291127..291129,291136..291138)
/locus_tag="DSY0258"
/note="Qo binding site; other site"
/db_xref="CDD:238176"
gene 291262..291636
/locus_tag="DSY0259"
/db_xref="GeneID:3953242"
CDS 291262..291636
/locus_tag="DSY0259"
/note="similarity to COG1290 Cytochrome b subunit of the
bc complex"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516492.1"
/db_xref="GI:89893005"
/db_xref="GeneID:3953242"
/translation="MDKDTVPFFPNHLTTEVSVALGILGVVFFLAGVIPKDLGPPANP
VMTPAHIEPDWYFMWLFGLLKIVPQLLGLLIPALLVVGVILLPWLDKSTSRRPEERPW
VIIGAEIVLILMVVLTYIALHF"
misc_feature 291280..>291465
/locus_tag="DSY0259"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cl00193"
/db_xref="CDD:241673"
misc_feature order(291283..291285,291292..291297,291304..291309,
291316..291318,291325..291330,291334..291342,
291349..291351,291364..291366,291370..291375,
291379..291393,291397..291405,291412..291414,
291418..291429)
/locus_tag="DSY0259"
/note="intrachain domain interface; other site"
/db_xref="CDD:238179"
misc_feature 291295..291297
/locus_tag="DSY0259"
/note="Qi binding site; other site"
/db_xref="CDD:238179"
misc_feature 291382..>291621
/locus_tag="DSY0259"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cl00193"
/db_xref="CDD:241673"
misc_feature order(291412..291414,291418..291423,291430..291432,
291439..291444)
/locus_tag="DSY0259"
/note="Qo binding site; other site"
/db_xref="CDD:238179"
gene 291670..292233
/locus_tag="DSY0260"
/db_xref="GeneID:3953243"
CDS 291670..292233
/locus_tag="DSY0260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516493.1"
/db_xref="GI:89893006"
/db_xref="GeneID:3953243"
/translation="MDAFGGESMTGNGRNNPSFHLLSIFCIWLGMGFLVGITGSVIAA
PHYVLPDDREAKLVYASGLQPQQSAGTQSSEPSGASGTAREGELFLKKGCTQCHEVSY
YGIAGGVTGPDLTKAYGDVPDRFGKTLAEFLQEPEGTMAEMFVRMDITDDEKNQVLEL
LTAAGGETAQQPAGEENESTENTNNPE"
gene 292286..294184
/locus_tag="DSY0261"
/db_xref="GeneID:3955032"
CDS 292286..294184
/locus_tag="DSY0261"
/note="similarity to COG1622 Heme/copper-type
cytochrome/quinol oxidases, subunit 2"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516494.1"
/db_xref="GI:89893007"
/db_xref="GeneID:3955032"
/translation="MEKGLFKKIVLSLAGLLVGLVIAVYLSAQLNPEAEAAAAFGGKN
ISVDGVPDDVVQAALKTYVPPGQLDEYYMFASGGHSGNVFVYGVPSMRRIRTIPVFTP
ESAVGYGWTTESKEMLGEWSWGDVHHPALSETKGDYDGRWLFVNDNANSRAARIDLDS
FRTSQILDIPNIYGPHSAVFMTPNSEYFMLGSRFAGPIPYGTYSPIENLSKDYNCVLA
AVAIDPNNGEMSVGWEVLMPPWSFDLSDAGKLDSEGWAFLTTYNTEEAYELLEVNASQ
REMDYVVALNWKMLEQAANEGKYKIVDGVKMIDPLDVPGSVYLVPAMKSPHGVDVTPD
GKYFIANGKVAPVATVFSFEKFKECIDNKDFQGEERGFPVVNYEKVRVAEVPVGLGPL
HTQFDGNGYAYTTLFIDSTIAKWSLDTFEVVDVTPVHYCPGHLCAAEGDTVSPDGKYL
VSLNKLAKDKFLSVGPSHPESAQLIDLTTDKMKILMDVPTDPEPHFAQMIKADKITTW
EVFEKDPSQPGAVYEKENARIERDGNNVTVYQMGFRSRYYPDHVEVNEGDHVTWYLTN
TDFDEDITHGFGICLYDLNAEAQPGETIKFEFVADKAGVYPFYCTNFCSALHQEMQGW
FIVKPKGL"
misc_feature 292457..294172
/locus_tag="DSY0261"
/note="nitrous-oxide reductase, Sec-dependent; Region:
nitrous_NosZ_Gp; TIGR04246"
/db_xref="CDD:234520"
misc_feature <293909..294154
/locus_tag="DSY0261"
/note="Cytochrome C oxidase subunit II, periplasmic
domain; Region: COX2; pfam00116"
/db_xref="CDD:201014"
gene 294271..294870
/locus_tag="DSY0262"
/db_xref="GeneID:3955033"
CDS 294271..294870
/locus_tag="DSY0262"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516495.1"
/db_xref="GI:89893008"
/db_xref="GeneID:3955033"
/translation="MDFVRKLFKGNLNLIGRIMFGAAGLILLASLFLPWWHLDLVAPQ
YPEGLSVIVYPDKLDGRIDIINNINHYIGMKWISEEDFPEFQVITKVAYVIIGLALIT
ALVKKRWLAWLTAGLGAVGGMIGVYDLWRWLRDYGTQLDPMAAIKIDPFTPPIIGTNK
LANFITYTGFNSGGYLLGLSIILMLLAAWRFKEHEKQEE"
misc_feature <294556..294648
/locus_tag="DSY0262"
/note="Domain of unknown function (DUF4337); Region:
DUF4337; pfam14235"
/db_xref="CDD:222613"
gene 294851..296356
/locus_tag="DSY0263"
/db_xref="GeneID:3955034"
CDS 294851..296356
/locus_tag="DSY0263"
/note="similarity to COG3420 Nitrous oxidase accessory
protein(Evalue: 4E-44)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516496.1"
/db_xref="GI:89893009"
/db_xref="GeneID:3955034"
/translation="MKSKKNRRCFWLSLFLFLWIIPLSAHAATLEVQGGGSAESIQSA
LARAAPGDTIHVYSGTYVGKIVIDKAVSLIGIGMPILDGGGEGDVVSIKGDGVTFKGF
QVMGSGKRLQDSDAGIKLYSAGNVIEDNKLTNNLFGMYLLKSPHNTLRNNTIIGRPAK
NKLQASKKDEAGEAGTYDILPSFEGESGDGIHLFAASHNLIENNEITDTRDGIYFNYA
HDNRLLYNHIDGVRYAIHYMYSDDNYFEGNIATNNVAGAAPMYSKRITFRENVFAYNR
GHRSFGVLFSNCNDCLAEGNVFFGNTRGALFDVSYHNIFRNNLVAANDIGIDLISSSG
FNTFTENNFMDNMEQIAFRAGRIGEGNVFYEEGTGNYWNDYRGFDLDQNGIGDTPYLT
GDIFTYLMNKAPAVRLFLNSPAAKALEFAENMFPVIEIPKAEDAYPLIKPVAIEINGQ
FHIEKNQVSNKIFGAYSLLMLLIAGMITARAFGVSSQGIKRVENYLRGGQK"
misc_feature 294971..296173
/locus_tag="DSY0263"
/note="nitrous oxide reductase family maturation protein
NosD; Region: NosD_copper_fam; TIGR04247"
/db_xref="CDD:234521"
misc_feature 295199..295318
/locus_tag="DSY0263"
/note="parallel beta-helix repeat (two copies); Region:
para_beta_helix; TIGR03804"
/db_xref="CDD:234360"
misc_feature 295418..295528
/locus_tag="DSY0263"
/note="parallel beta-helix repeat (two copies); Region:
para_beta_helix; TIGR03804"
/db_xref="CDD:234360"
misc_feature 295484..295609
/locus_tag="DSY0263"
/note="parallel beta-helix repeat (two copies); Region:
para_beta_helix; TIGR03804"
/db_xref="CDD:234360"
gene 296353..296895
/locus_tag="DSY0264"
/db_xref="GeneID:3955035"
CDS 296353..296895
/locus_tag="DSY0264"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516497.1"
/db_xref="GI:89893010"
/db_xref="GeneID:3955035"
/translation="MSRKIMVVLLSLWCLSLIGCSSGGAAGTPREIDPTIDICPVCRM
SVIDEHFAAQIIDSQGQVEIFDDIGCMSIFMRRLEAGAQDSILATYVKDFESMEWIQA
QEAFYVQGRIDTPMSFGIVAFAAEETARKFAQEVGGKQLTWEQVLTEPLTIGLDIEFN
QEDFNVQDLDTGETREERGN"
misc_feature 296395..296790
/locus_tag="DSY0264"
/note="NosL; Region: NosL; cl01769"
/db_xref="CDD:242698"
gene 296896..297732
/locus_tag="DSY0265"
/db_xref="GeneID:3955036"
CDS 296896..297732
/locus_tag="DSY0265"
/note="similarity to COG1277 ABC-type transport system
involved in multi-copper enzyme maturation, permease
component(Evalue: 2E-33)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516498.1"
/db_xref="GI:89893011"
/db_xref="GeneID:3955036"
/translation="MQLINVVTIAEKELLESIRSKWLGTFTVVFALIALLVSFFGLSS
LGVGGQQGFNRVTASLLNLVLYLLPLIALVMGSATVAGEKEAGSLHVLLTQPIDKAEV
IIGKFGGLALALIASILVGFGGAGVVIAWKTGSINITDYLMFVSLSMILAMVFLSIAI
LISVIVSRRAQGIGLGIFIWFLMILVYDFLAIGVAGLSNVSVIIPLLLLLLLANPADM
VRVLVILQLGGEETFGPTLVALTRMLTQGSGELLLYGALLIWMIIPLLIAAILFGRKQ
DY"
misc_feature <297115..>297480
/locus_tag="DSY0265"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_2; cl17866"
/db_xref="CDD:248420"
gene 297672..298655
/locus_tag="DSY0266"
/db_xref="GeneID:3955037"
CDS 297672..298655
/locus_tag="DSY0266"
/note="similarity to COG1131 ABC-type multidrug transport
system, ATPase component(Evalue: 9E-52)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516499.1"
/db_xref="GI:89893012"
/db_xref="GeneID:3955037"
/translation="MDDHTSPDCGNFVRPQTGLLGGDPMEVINTLEVKYAQKFYGPFQ
AVKDINLTVEKGEIYALLGHNGAGKSTLIKMILGLVKASAGMIEIEGLNYDAKNKEIK
KRVGYLPERMNFYDNLTAWETISFYAKLKGITRKRCEEVLEQVGLREAEHRRVGTFSK
GMQQRLGLAQAIIHKPDLLVLDEPTTGLDPIGILELKAMIRNWNKEGTTILFSSHNLN
DVEELAQRIGIMNRGEMIAQGSLAELQDRLGLPTKIKIDLAVIPVDLEEILVGKRIKT
FQLEGKTVSIDCPKDKKTQVITAVMDGMLKVLDLRLEEPGLNSIYQNIMAE"
misc_feature 297753..298646
/locus_tag="DSY0266"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:224054"
misc_feature 297762..298388
/locus_tag="DSY0266"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 297858..297881
/locus_tag="DSY0266"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(297867..297872,297876..297884,297999..298001,
298215..298220,298314..298316)
/locus_tag="DSY0266"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 297990..298001
/locus_tag="DSY0266"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 298143..298172
/locus_tag="DSY0266"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 298203..298220
/locus_tag="DSY0266"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 298227..298238
/locus_tag="DSY0266"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 298302..298322
/locus_tag="DSY0266"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 298789..299364
/locus_tag="DSY0267"
/db_xref="GeneID:3955038"
CDS 298789..299364
/locus_tag="DSY0267"
/note="similarity to COG0290 Translation initiation factor
IF3(Evalue: 9E-59)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516500.1"
/db_xref="GI:89893013"
/db_xref="GeneID:3955038"
/translation="MEDGWNSARLFCDFFWRWFVISKDLRINDEIRAREVRLVGEEGE
QLGIVQLRDAQRIAAEKSLDLVEIAPTAKPPVCKIMDYGKYKYEQAKRDKEARKKQKT
MEIKEVKLRPNIEDHDFETKARNAQRFLNDGDKVKVTIMFRGREVTHPELGRTLCLRL
AEFCKAEANIERDPKLEGRNMIMILAPVKHD"
misc_feature 298852..299355
/locus_tag="DSY0267"
/note="translation initiation factor IF-3; Reviewed;
Region: infC; PRK00028"
/db_xref="CDD:234582"
misc_feature 298852..299079
/locus_tag="DSY0267"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature 299092..299349
/locus_tag="DSY0267"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene 299385..299582
/gene="rpmI"
/locus_tag="DSY0268"
/db_xref="GeneID:3955039"
CDS 299385..299582
/gene="rpmI"
/locus_tag="DSY0268"
/note="similarity to COG0291 Ribosomal protein L35"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_516501.1"
/db_xref="GI:89893014"
/db_xref="GeneID:3955039"
/translation="MPKMKTHRGAAKRFKKTGTGKIVRHHAFTSHILEKKSPKRKRNL
RKGTVMHKTDAKRIARLVAYL"
misc_feature 299385..299579
/gene="rpmI"
/locus_tag="DSY0268"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:234676"
gene 299689..300051
/gene="rplT"
/locus_tag="DSY0269"
/db_xref="GeneID:3955040"
CDS 299689..300051
/gene="rplT"
/locus_tag="DSY0269"
/note="binds directly to 23S ribosomal RNA prior to in
vitro assembly of the 50S ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_516502.1"
/db_xref="GI:89893015"
/db_xref="GeneID:3955040"
/translation="MARVKRGVTKHQRHKKVLKLAKGFRGAKSKLYRPANEQVMKSLA
YAYAHRRDKKGDFRKLWIARINAAARLNGLSYSRMMNGLKIAGVSVNRKMLADLAIND
AAAFTELVNVAKAQVSAK"
misc_feature 299704..300021
/gene="rplT"
/locus_tag="DSY0269"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature order(299704..299721,299725..299736,299749..299772,
299776..299787,299794..299799,299809..299814,
299821..299865,299869..299877,299884..299886,
299896..299898,299914..299919,299926..299931,
299938..299940,299962..299970)
/gene="rplT"
/locus_tag="DSY0269"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature order(299794..299796,299806..299808,299815..299820,
299824..299829,299836..299838,299953..299964,
299971..299973,299989..299994,300010..300015)
/gene="rplT"
/locus_tag="DSY0269"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature order(299857..299859,299866..299871,299878..299880,
299887..299892,299896..299898,299968..299970,
299977..299979,299986..299988)
/gene="rplT"
/locus_tag="DSY0269"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene 300067..300924
/locus_tag="DSY0270"
/db_xref="GeneID:3955041"
CDS 300067..300924
/locus_tag="DSY0270"
/note="similarity to COG0566 rRNA methylases(Evalue:
3E-33)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516503.1"
/db_xref="GI:89893016"
/db_xref="GeneID:3955041"
/translation="MLRHPFYIGVWGDDMLTSLQNEQVKYVVNLHKRKFREENGEFLI
EGWRFVEEGLARGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDT
ENPQGILAVVKQSRWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAG
VTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIATHCQPEEILKVCRSHKIPVFVGDAEG
TDLYETHFAQPMALVVGNEGNGPSAAFRGPGVKRITIPMSHQVESLNVAMATGIILYE
VRRRMTSTT"
misc_feature 300115..300909
/locus_tag="DSY0270"
/note="rRNA methylases [Translation, ribosomal structure
and biogenesis]; Region: SpoU; COG0566"
/db_xref="CDD:223640"
misc_feature 300196..300408
/locus_tag="DSY0270"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; smart00967"
/db_xref="CDD:214943"
misc_feature 300469..300891
/locus_tag="DSY0270"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:216010"
gene 301454..302476
/gene="pheS"
/locus_tag="DSY0271"
/db_xref="GeneID:3955042"
CDS 301454..302476
/gene="pheS"
/locus_tag="DSY0271"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a heterotetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 1 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit alpha"
/protein_id="YP_516504.1"
/db_xref="GI:89893017"
/db_xref="GeneID:3955042"
/translation="MKQEVHRIQEETLAELQQVSTLEALQELKVKVLGKKGSLTAQLR
KMGGLSPEERPIFGQVVNETRDILEAAWIRREEELSQTAMLKQLEEEKLDISLPGVSL
PQGHQHPLTKVIEEIEEIFLGMGFQIAEGPEIESDYYNFEALNLPKDHPAREMQDSFY
ITEEILLRTQTSPVQIRTMEKQRPQLPVKIICPGKVYRNDDDATHSPMFHQVEGLMVD
RRIRMSDLKGILLSFSRMMFGESREIRLRPSFFPFTEPSAEVDVSCMLCGGAGCRICK
GTGWIEILGSGMVHPRVLEMGGYDSKELTGFAFGMGVERIAMLKYGIEDMRLLFDNDL
RFLQQF"
misc_feature 301454..302473
/gene="pheS"
/locus_tag="DSY0271"
/note="phenylalanyl-tRNA synthetase subunit alpha;
Validated; Region: pheS; PRK00488"
/db_xref="CDD:234780"
misc_feature 301502..301720
/gene="pheS"
/locus_tag="DSY0271"
/note="Aminoacyl tRNA synthetase class II, N-terminal
domain; Region: Phe_tRNA-synt_N; pfam02912"
/db_xref="CDD:111764"
misc_feature 301775..302458
/gene="pheS"
/locus_tag="DSY0271"
/note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain
catalytic core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its structure
and the presence of three characteristic sequence motifs.
This domain is primarily responsible...; Region:
PheRS_alpha_core; cd00496"
/db_xref="CDD:238277"
misc_feature order(301775..301777,301784..301786,301793..301798,
301817..301819,301832..301837,301841..301849,
301898..301900,301913..301915,301925..301942,
301985..301987,302012..302020,302030..302032,
302036..302038,302042..302044,302048..302050,
302069..302071,302120..302128,302132..302137,
302195..302197,302216..302224,302228..302230,
302321..302326,302441..302443,302447..302455)
/gene="pheS"
/locus_tag="DSY0271"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238277"
misc_feature 301829..301849
/gene="pheS"
/locus_tag="DSY0271"
/note="motif 1; other site"
/db_xref="CDD:238277"
misc_feature order(301913..301921,301961..301963,301967..301969,
301976..301978,302045..302047,302051..302053,
302063..302071,302078..302080,302084..302086,
302090..302092,302204..302206,302210..302215,
302297..302314,302378..302389,302396..302398,
302429..302431)
/gene="pheS"
/locus_tag="DSY0271"
/note="active site"
/db_xref="CDD:238277"
misc_feature 302042..302053
/gene="pheS"
/locus_tag="DSY0271"
/note="motif 2; other site"
/db_xref="CDD:238277"
misc_feature 302381..302398
/gene="pheS"
/locus_tag="DSY0271"
/note="motif 3; other site"
/db_xref="CDD:238277"
gene 302489..304894
/gene="pheT"
/locus_tag="DSY0272"
/db_xref="GeneID:3955043"
CDS 302489..304894
/gene="pheT"
/locus_tag="DSY0272"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a tetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 2 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit beta"
/protein_id="YP_516505.1"
/db_xref="GI:89893018"
/db_xref="GeneID:3955043"
/translation="MKVSLEWLREYVDIAQTAEDLAESLTRGGIEVGGVEYLNQGLEA
VVVGEITRMEHHPNADKLWICEVNLGDRSTTIVTGAQNLLVGDRIPVALPGTTLPNGV
HIEVSKLRGVESSGMLCSTEELHLDSGLGDPRSEGGILILEKETPLGATMDTVLGEGD
CVLDLELYPNRPDCLGMVNVAREVASLTGEALHLPAWAEGSQGPDYPGDPKARIVLDD
PELCQRYAGLVVEDVNIEPSPEWMQKRLKAAGVRPISNIVDITNYIMLEMGQPLHAFD
RDAIAGAVHVRRARAGEKLVTLDGIERELDPEMLLIADDEKALGLAGVMGGLNSEITD
STKRIFVESAHFSSVSIRRTSRRLGLRSEASNRFEKGVNPHGVAATLGRVAELVIQLG
AGKPVGFVEQAGQLPKPAAVSLTVEKTNSLLGTVLTEEEITGVLKRLRFPYQEKDRGY
EVQIPTYRSDITIEEDLIEEVARLTGYDRIPTTLPQGDQTQGRRTPEQEFKRTLRHLL
VGLGLNEVMTYSFTRPDADRQFGDMDQAIPLLNPLREELSVMRTALLPSIMEIAARNI
SRRNLDIRLFEMGSIYKSKERPLVKLPQEELHLAGVIWGKSSRHWLTPVTEYDFYTVK
GILEEVAREFGLEFDYKLPNNQELTHPGRSADIYLNGEKIGLMGEIHPALGKEWELER
ALIFELAVTPLMEAGNRTIRAFSIPKFPAMQRDLAVVVPLEVSAQDVMKRIKELGGTL
LVQVNIFDVYTGKPIPEDRKSLAFALKYQALDRTLKDEEVNALNQQVLEGIEKEFGAA
WRK"
misc_feature 302489..304891
/gene="pheT"
/locus_tag="DSY0272"
/note="phenylalanyl-tRNA synthetase subunit beta;
Reviewed; Region: pheT; PRK00629"
/db_xref="CDD:234804"
misc_feature 302621..302935
/gene="pheT"
/locus_tag="DSY0272"
/note="tRNA-binding-domain-containing prokaryotic
phenylalanly tRNA synthetase (PheRS) beta chain. PheRS
aminoacylate phenylalanine transfer RNAs (tRNAphe).
PheRSs belong structurally to class II aminoacyl tRNA
synthetases (aaRSs) but, as they aminoacylate...; Region:
tRNA_bind_bactPheRS; cd02796"
/db_xref="CDD:239196"
misc_feature order(302669..302671,302708..302710,302768..302770,
302807..302809,302828..302830,302837..302839)
/gene="pheT"
/locus_tag="DSY0272"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:239196"
misc_feature 303191..303664
/gene="pheT"
/locus_tag="DSY0272"
/note="B3/4 domain; Region: B3_4; pfam03483"
/db_xref="CDD:202662"
misc_feature 303716..303919
/gene="pheT"
/locus_tag="DSY0272"
/note="tRNA synthetase B5 domain; Region: B5; smart00874"
/db_xref="CDD:197942"
misc_feature 303974..304567
/gene="pheT"
/locus_tag="DSY0272"
/note="Phenylalanyl-tRNA synthetase (PheRS) beta chain
core domain. PheRS belongs to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure. While class
II aaRSs generally aminoacylate the 3'-OH ribose of the
appropriate tRNA, PheRS is an...; Region:
PheRS_beta_core; cd00769"
/db_xref="CDD:238392"
misc_feature order(303980..303985,304004..304006,304013..304015,
304025..304027,304031..304033,304037..304045,
304097..304108,304139..304141,304181..304183,
304211..304213,304226..304228,304232..304234,
304238..304240,304271..304273,304364..304366)
/gene="pheT"
/locus_tag="DSY0272"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238392"
misc_feature 304025..304045
/gene="pheT"
/locus_tag="DSY0272"
/note="motif 1; other site"
/db_xref="CDD:238392"
misc_feature 304157..304168
/gene="pheT"
/locus_tag="DSY0272"
/note="motif 3; other site"
/db_xref="CDD:238392"
misc_feature 304232..304240
/gene="pheT"
/locus_tag="DSY0272"
/note="motif 2; other site"
/db_xref="CDD:238392"
misc_feature 304607..304888
/gene="pheT"
/locus_tag="DSY0272"
/note="Ferredoxin-fold anticodon binding domain; Region:
FDX-ACB; pfam03147"
/db_xref="CDD:202554"
gene 304872..305174
/locus_tag="DSY0273"
/db_xref="GeneID:3955044"
CDS 304872..305174
/locus_tag="DSY0273"
/note="similarity to COG3027 Uncharacterized BCR"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516506.1"
/db_xref="GI:89893019"
/db_xref="GeneID:3955044"
/translation="MELPGENSIVSGGCHMAEENEKVIVEIFGEKHVIRGQESPEHIL
KVAREVDKKMRLIAQRTPRLAIHQIAILAALNLADELEKIKEEQETLMQLIEAQEE"
misc_feature 304917..305168
/locus_tag="DSY0273"
/note="Cell division protein ZapA; Region: ZapA; cl01146"
/db_xref="CDD:242332"
gene 305346..305708
/locus_tag="DSY0274"
/db_xref="GeneID:3955045"
CDS 305346..305708
/locus_tag="DSY0274"
/note="similarity to COG1433 Uncharacterized ACR"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516507.1"
/db_xref="GI:89893020"
/db_xref="GeneID:3955045"
/translation="MKIALPSRQNRIDDHFGHCEYFTVFSVDEGKKELVDQETVSSPV
GCGCKSNIAQTLAEMGVTLMLAGNMGEGAVRVLSNSGISVIRGCSGEVKSVAQQWLEG
TLEDSGDSCHEHEHSCQH"
misc_feature 305346..305645
/locus_tag="DSY0274"
/note="This uncharacterized conserved protein belongs to a
family of iron-molybdenum cluster-binding proteins that
includes NifX, NifB, and NifY, all of which are involved
in the synthesis of an iron-molybdenum cofactor (FeMo-co)
that binds the active site of...; Region: MTH1175;
cd00851"
/db_xref="CDD:238431"
gene complement(305852..306232)
/locus_tag="DSY0275"
/db_xref="GeneID:3955046"
CDS complement(305852..306232)
/locus_tag="DSY0275"
/note="similarity to COG0443 Molecular chaperone"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516508.1"
/db_xref="GI:89893021"
/db_xref="GeneID:3955046"
/translation="MNKKTSRFLLLMTLFLGLSLGIFFNAATTNAYPDMSEDGVTCTP
CHEEGEHGGSGEPATEPEPAPPAPAPVQPTPSPQEPAQESPQVAKEQPDSADTTGAVS
PALIVGVVVLLLLAVYLFAFKKHK"
gene complement(306268..307887)
/locus_tag="DSY0276"
/db_xref="GeneID:3955047"
CDS complement(306268..307887)
/locus_tag="DSY0276"
/note="similarity to COG1053 Succinate
dehydrogenase/fumarate reductase, flavoprotein subunits"
/codon_start=1
/transl_table=11
/product="fumarate reductase flavoprotein subunit"
/protein_id="YP_516509.1"
/db_xref="GI:89893022"
/db_xref="GeneID:3955047"
/translation="MENMNRRNFLKKATVGAAALAGASMLTACGTPETVKPNSDASPA
GRSWDYEVDAVVVGGGHGGLCAAATAAERGKKVLLVEISGIVGGGSAWSGGILHTFGT
QTYEEYMEYSEGLHDPVLGKLFFETFKGEFMPWVQNTVGAPVYIMGPQAGPNGRPQDK
VPNSIGDKEWKMGTKEDKGYAGLRNYFKAIEDYVKAKGGTVLLKTRGLNLITDGEKVV
GLKIVTQGEEPKYVKAGAVILATGNFFANKGLLTQFVGPYAYRTKVMGVPYATGDGLR
MGQGVGAMLSEGLSTWSGTLVCVTHNNAVTDDPAAYEKIIETDPNSMAGINKGRPNPP
WFGTGTVLPELVPAIVVNLNGKRFKDEAHPIDSKYPRLTDAVLVQPEGMAFVIGDQAM
YDANPSTSAMMKIIKDEGVKVIEGATLEEFAANMEKAGVYKANLLKTIREYNAAIDKG
TTMELEVPREYNLNKISTPPFYGVPVTGQIYCNFGGLAINENVQVLDHQKQPIPGLYA
VPPAAGGVMRSIYTGSIALAGTFGWLAGKQI"
misc_feature complement(306274..>307260)
/locus_tag="DSY0276"
/note="tricarballylate dehydrogenase; Validated; Region:
PRK08274"
/db_xref="CDD:236214"
misc_feature complement(306295..>306435)
/locus_tag="DSY0276"
/note="putative FAD-binding dehydrogenase; Reviewed;
Region: PRK12834"
/db_xref="CDD:183782"
gene 308165..309529
/locus_tag="DSY0277"
/db_xref="GeneID:3955048"
CDS 308165..309529
/locus_tag="DSY0277"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516510.1"
/db_xref="GI:89893023"
/db_xref="GeneID:3955048"
/translation="MRISMLQHNSLPEQHQNQLSLIFSSLKLSQLLRTAGIRKSYGIS
SFVVFQIIFQLVFQGRNLFRLLEGSRAESLPGKDVVYRFLNDSRYNWRRFYQLLSLKI
VGSFEKLTSAQRIRVFIVDDSVMDRERSKKVELLARVFDHVSGRFVRGYTLLTLGWSD
GFSFAPLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRMEAMIPKPDAVVQMLERALK
AGFSADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGESLSLRELYARVP
KNSKAEILGSVRVHTPSGLALKIVFVQNRNNRREWLAILTTDLSLENAEIVRIYGMRW
SIETFFKMAKSHLKLGTEFQGRSFDMMISHTSIVFSRYLILEWERRENNDERSLGGLF
YLFADEVMDLDLKTAIRQLMAFVLNLLPNKPENNESLSQLHKWIAELPSYIRALFAQL
GCES"
misc_feature 308402..>308920
/locus_tag="DSY0277"
/note="DDE superfamily endonuclease; Region: DDE_5;
cl17874"
/db_xref="CDD:248428"
misc_feature <308783..309286
/locus_tag="DSY0277"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
gene 309559..310500
/locus_tag="DSY0278"
/db_xref="GeneID:3955049"
CDS 309559..310500
/locus_tag="DSY0278"
/note="similarity to COG0583 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516511.1"
/db_xref="GI:89893024"
/db_xref="GeneID:3955049"
/translation="MRLEQMEYLISLAETGSITQTAKYFFMSQQGISYSIQQLEKELD
VKILHNHRNRVTFTAAGECVLVRARDFVKQYQELQEELQSFQKDKTPSYKARLFLYID
PFMANTFLPRILKKLHKQSKIKLATKEQNLTLLLQTLSDPSEVDGIGLVGLTEHYTTE
QFKQKFDFEPIHSCHLQVLVSETSPLAKLPALSFEEIAQYPICLFASDYNSEEVGKDL
FFGRTVKNLSVILQTTNVDMYRDMVNKNIAIGLTTDYLESFFHKSSLTGIPLKEPIQF
HVGFIRRKGRPFSVMDEEFMAIAKDVLNSQLAKKVSQ"
misc_feature 309559..310485
/locus_tag="DSY0278"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 309565..309744
/locus_tag="DSY0278"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 309844..310455
/locus_tag="DSY0278"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature order(309889..309894,309898..309903,309910..309912,
309925..309945,310246..310263,310279..310284,
310288..310293)
/locus_tag="DSY0278"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 310632..311462
/locus_tag="DSY0279"
/db_xref="GeneID:3955050"
CDS 310632..311462
/locus_tag="DSY0279"
/note="similarity to COG0789 Predicted transcriptional
regulators(Evalue: 8E-51)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516512.1"
/db_xref="GI:89893025"
/db_xref="GeneID:3955050"
/translation="MKEQYYSIGQVAKLSNISIPTLRYYDQIDLYKPAHVDTLTSYRY
YKESQLYILDMIKSLKYIGTPLTDIKTVLNYTPAELFCFLEHQEDVIEGKIQGLQEIH
KNLQQTKKQLQQQMKTALATDVFEKTEDLQIFTLPVENYAPQSIPNDCYGELIKLVEA
EGSRISSHYGCIYPLLDYNSMDEVRCTHIFTPLMTDRLNSHPAYRRNIRLISESRFIG
IAFQYHPDRYIEHYQRLYHYIRSKELPVADHVYDLFTPTRYSQHKEEEFMVELKVQLL
"
misc_feature 310647..310937
/locus_tag="DSY0279"
/note="Helix-Turn-Helix DNA binding domain of the BmrR
transcription regulator; Region: HTH_BmrR; cd01107"
/db_xref="CDD:133382"
misc_feature 310647..310853
/locus_tag="DSY0279"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature order(310650..310658,310698..310700,310752..310760)
/locus_tag="DSY0279"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133382"
misc_feature 310761..310763
/locus_tag="DSY0279"
/note="drug binding residues [chemical binding]; other
site"
/db_xref="CDD:133382"
misc_feature order(310794..310796,310803..310805,310815..310820,
310845..310847,310881..310883,310893..310895,
310911..310913,310923..310925,310932..310937)
/locus_tag="DSY0279"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133382"
gene 311581..312753
/locus_tag="DSY0280"
/db_xref="GeneID:3955071"
CDS 311581..312753
/locus_tag="DSY0280"
/note="similarity to COG0477 Permeases of the major
facilitator superfamily(Evalue: 1E-142)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516513.1"
/db_xref="GI:89893026"
/db_xref="GeneID:3955071"
/translation="MNEQKTVLALLLMNIFIAFLGIGLVIPVLPTLMRELGVNGTVVG
YLTAAFAIAQLICSPFAGKAADKIGRKKVLVTGLFLFGFSEVLFGLGQEIEVLFLARI
LGGVSSALIMPAVTAFIADITTLETRPKALGYMSAAINTGFIIGPGIGGFLADFGTRT
PFFFAGALGAVAAILSIIFLKEPDRSNEAAEEEVPKLKTSIKRMLAPMYFIAFALILI
ASFGLSAFESFFALFVDGKFFFTPKEIAFVITAGALLGALIQVLLFERLARRWGEIKL
IRYSLILSGILIFLLTAVHSYVWILVVTTLAFIGFDLFRPAVTSYLSKIAGNEQGFVG
GMNSMFTSLGNIFGPIIGGMLFDVDIDYPFYFSVAVMILGVIITLFWKEPSRILQQ"
misc_feature 311602..312726
/locus_tag="DSY0280"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 311611..312627
/locus_tag="DSY0280"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:219516"
misc_feature order(311644..311646,311653..311661,311665..311670,
311719..311721,311728..311733,311740..311742,
311752..311757,311761..311766,311902..311907,
311914..311919,311926..311931,311938..311940,
311974..311979,311986..311991,312007..312009,
312238..312240,312247..312252,312259..312264,
312271..312273,312313..312315,312325..312327,
312337..312339,312346..312348,312358..312360,
312502..312504,312511..312516,312523..312525,
312535..312540,312547..312549,312577..312582,
312589..312594,312601..312606,312613..312615)
/locus_tag="DSY0280"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 312992..313909
/locus_tag="DSY0281"
/db_xref="GeneID:3955072"
CDS 312992..313909
/locus_tag="DSY0281"
/note="similarity to COG0696 Phosphoglyceromutase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516514.1"
/db_xref="GI:89893027"
/db_xref="GeneID:3955072"
/translation="MMHFVMIFLDGFGLGGDRDNPIMAAHTPYIDELLGGHYLWGQER
RIESEQLILIPLDASLDVTGIPQSATGQTTLWTGVNGAKALGFHLNAYPNEKLAEIIK
EKSIFKQLADQGKKVTFANTFTSHYDEMIASGKRRHTASTLSALAGGVPLRRIEDLLQ
GKGVYQDMTNEILRELEQEADIPLITSYEAGKNLGRLALDYDFTLYEFFQTDVRGHKQ
DWEKAVALIEQIDGFIGGFMSVVRHEDVTWLLTSDHGNIEDFRVKGHTQNPVPALGWS
SKPLEWPQWERLEDVTPGIVRMILGTREL"
misc_feature <313589..313816
/locus_tag="DSY0281"
/note="2,3-bisphosphoglycerate-independent
phosphoglycerate mutase; Region: PhosphMutase; cl17294"
/db_xref="CDD:247848"
gene 313911..316529
/locus_tag="DSY0282"
/db_xref="GeneID:3955073"
CDS 313911..316529
/locus_tag="DSY0282"
/note="similarity to COG0826 Collagenase and related
proteases(Evalue: 5E-90)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516515.1"
/db_xref="GI:89893028"
/db_xref="GeneID:3955073"
/translation="MSHIKDAELSSMELLAPAGSYESFKAAVENGADAVYLGGKSFNA
RASAANFGLDELRQVVQYAHERETKVYVTVNILIADQEFPELYDYIYSLYEIGVDALI
LQDIGVGSMIRSVLPEMERHASTQMTINTTWGVRHVERLGFQRVVLAREVSVEQMKTI
SAKTALEIEVFVHGALCICYSGQCLMSSYIGGRSGNRGRCAQPCRLTYQLMNEERKDL
LAEANLGNHLLSPRDLNFVEEIHTLKECGVYSLKVEGRMKRPEYVATVTRIYRRALDH
VLSQENGVNAGSAVTGEEKTELLQIFNRDFSRAYFHSHPGAELMSYARPNNRGIRLGR
IVQNRGNQLEIKLEAYLRPGDGIEVWTSRGREGITVQKVWQGKRESEEGKPGDIVQIE
FAGKSHPGDRVFKTHDEQLMEKARQSFQEGKERRKRPLKMRLSGSIGELMALEAWDQD
KHVRVDSATPAQQAMKRPLTQEYAFQQLNRLGTTPFWLEELDLEVEEGLMLPVSELNE
MRRLVVEGLLHKSFQQEKVTRGEYKQRLKEWQNRLKLEQEEQVQQAQQHKEPLPGSHS
KAASLAARRLTVAVSDLEGVKAALKAGARRIALGGERWRSRKGMSWEDIRAGVRLCKE
QGANCLLRLPRILNEEQSAWWYEALLKVKAWEDRPWIMVANLGELEMVKDIDPDWPFE
VDYPVNIFNEAAVAHLFRLGAQGVTLSTELEHSQIEPLARWPKTEVFAFGELEMMVSE
YCPVGATLGGKKGTKCTAPCVKEPHYLRDRLNYDFPIETDLDCRMHLYNVKRLNLYKE
LGSIAKMGVQRIRLQLDRANPVQIRDTVRVFLEGWERALAGERISEEQAEKVNGYLAE
RFPEGFTKGHYFRGVL"
misc_feature 313944..314981
/locus_tag="DSY0282"
/note="Collagenase and related proteases
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0826"
/db_xref="CDD:223896"
misc_feature 314157..314861
/locus_tag="DSY0282"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:216321"
misc_feature 315117..315470
/locus_tag="DSY0282"
/note="Collagenase; Region: DUF3656; pfam12392"
/db_xref="CDD:221556"
misc_feature 315891..316517
/locus_tag="DSY0282"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:216321"
gene 316567..318936
/locus_tag="DSY0283"
/db_xref="GeneID:3955074"
CDS 316567..318936
/locus_tag="DSY0283"
/note="similarity to COG1193 MutS-like ATPases involved in
mismatch repair, family 1(Evalue: 1E-176)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516516.1"
/db_xref="GI:89893029"
/db_xref="GeneID:3955074"
/translation="MVLNERVIRKLDFDKILERLANQCIMPRARELAEQLEPHSHLDL
VREALEETGEGKDILRINPLFSVRGAREIRPLVERCLKGGTLTTDELLQIRDTLKAAR
IVKQGLQEGKAEVPHLKGIMEQVILPKGIEEEITRCITEDGQVADQASSVLADLRRSI
SRLQTRIRETLDGIIRNPAYQKILQDPIVTQRSERYVVPVKQEYRQSFQGIVHDQSAS
GATLYIEPMAVVNLGNELREVVLKEQREVQRILLLLSARVEGEAEAIADAHEALARVD
FILAKARLSEEMNAGAPILTEKQEISLVQARHPLLTGKVVPLTIQLGTRFDTVVVTGP
NTGGKTVALKTIGLLAAMAQCGLHIPAESDSRVGVFTQIFADIGDEQSVEQSLSTFSG
HMKNIVEIVEKADWRSLILLDEVGAGTDPTEGSALAMAIIAELHERGARIVATTHYGA
LKNFAYNTTRVENASVEFDSETLRPTYRLLIGIPGKSNAFYIAGRLGLPEGVLDRART
FVTEREMQVADLIENLEDTQREIDLEKRRAREERQAIEKESLGLKEKSQKLEDDYQEL
MAKARDQATEIVREARREAERLIDELKLALKEERKDQQAIEKTRQGIRKLSNKVGDQD
TPLRTPHGVEPQEIKLGQMVYMTKLRQKGQVLKLPNDSGEVFVQAGVIKLNVPLSEIR
LIQEEKAAKPTRSVGGQGKVGMKKAETIRTEIDLRGMMVEEAGYELDKYLDDAVLTGV
GQVYVIHGKGTGALRQGIHEFLRGHHHVKSFRLGQHGEGDLGVTVVELK"
misc_feature 316576..318933
/locus_tag="DSY0283"
/note="recombination and DNA strand exchange inhibitor
protein; Reviewed; Region: PRK00409"
/db_xref="CDD:234750"
misc_feature 316624..317340
/locus_tag="DSY0283"
/note="MutS domain III; Region: MutS_III; pfam05192"
/db_xref="CDD:218489"
misc_feature 317473..318060
/locus_tag="DSY0283"
/note="ATP-binding cassette domain of MutS2; Region:
ABC_MutS2; cd03280"
/db_xref="CDD:213247"
misc_feature 317563..317586
/locus_tag="DSY0283"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213247"
misc_feature order(317572..317577,317581..317589,317698..317700,
317803..317808,317905..317907)
/locus_tag="DSY0283"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213247"
misc_feature 317689..317700
/locus_tag="DSY0283"
/note="Q-loop/lid; other site"
/db_xref="CDD:213247"
misc_feature 317713..317754
/locus_tag="DSY0283"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213247"
misc_feature 317791..317808
/locus_tag="DSY0283"
/note="Walker B; other site"
/db_xref="CDD:213247"
misc_feature 317815..317826
/locus_tag="DSY0283"
/note="D-loop; other site"
/db_xref="CDD:213247"
misc_feature 317893..317913
/locus_tag="DSY0283"
/note="H-loop/switch region; other site"
/db_xref="CDD:213247"
misc_feature 318706..318933
/locus_tag="DSY0283"
/note="Smr domain; Region: Smr; pfam01713"
/db_xref="CDD:216658"
gene 319028..319258
/locus_tag="DSY0284"
/db_xref="GeneID:3955075"
CDS 319028..319258
/locus_tag="DSY0284"
/note="similarity to COG1826 Sec-independent protein
secretion pathway components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516517.1"
/db_xref="GI:89893030"
/db_xref="GeneID:3955075"
/translation="MITPTVAVIALVIALILFGPGKLPELGKGLGKGIKEFKDATDLS
DDDGKKKKKEIAESKKEEPAESKKEEPVESKE"
gene 319711..321282
/locus_tag="DSY0285"
/db_xref="GeneID:3955076"
CDS 319711..321282
/locus_tag="DSY0285"
/note="similarity to COG1053 Succinate
dehydrogenase/fumarate reductase, flavoprotein
subunits(Evalue: 3E-24)"
/codon_start=1
/transl_table=11
/product="fumarate reductase flavoprotein subunit"
/protein_id="YP_516518.1"
/db_xref="GI:89893031"
/db_xref="GeneID:3955076"
/translation="MTINRRDFIKRAAAGAAVVAGSSFLVGCNNTEAVAPASAPEAWD
QETDVVVVGGGNGGLSAAAAAVEEGKKVILCEISAFLGGGSAYSGGTIHSWGLDTWEK
YKEHTEDLHDPVLAKKYVETFRQVYLPWLEKNGIPLKKHPGGKGFNNDYGLGSGEAGY
LRHKAYFDALANFVTGKGGTIMTQTRVLRLVIDEAGMVCGVQAIKKGESKAIFIKAGS
VILATGGFQSNKGLMAKYIGPNGDVARNMGTPYNTGSGMLMAQGVGAMTQGSFSTFSG
TFSGIVPGPAVEDEPELYEEKRAGDPQSLPGIGGGRPAVPMWVNFLFPDETTGILVNL
QGKRFADETSPIEAKYARLPQEVLKQKRAMAFMIGDKAIYDKAAGSEAILKMYMDQGG
KVVEAATLEELAAKCQEIHGMHKGAFLKTVNEYNKAIDSGTTDSLEVPRVLNHNKIAQ
GPFYAVPVTANIYHTFGGVAINENAQVLDVQRTPIPNLYACPPCAGIFREVYTGGIAS
AGTFGYIAGKHIAGK"
misc_feature 319909..321273
/locus_tag="DSY0285"
/note="tricarballylate dehydrogenase; Validated; Region:
PRK08274"
/db_xref="CDD:236214"
misc_feature <321055..321276
/locus_tag="DSY0285"
/note="Predicted oxidoreductase [General function
prediction only]; Region: COG3573"
/db_xref="CDD:226103"
gene 321537..323510
/locus_tag="DSY0286"
/db_xref="GeneID:3955077"
CDS 321537..323510
/locus_tag="DSY0286"
/note="similarity to COG3829 Transcriptional regulator
containing PAS, AAA-type ATPase, and DNA-binding
domains(Evalue: 2E-68)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516519.1"
/db_xref="GI:89893032"
/db_xref="GeneID:3955077"
/translation="MQRISQGTEKAYLEKCRDQRELFMEGKPVDPGIVPKVVYNSWVR
SQRYGVDPFEKPCHHPIDKSKSKELSRFIECLERYNFFIKQALELIDYQGFTFTFSAK
ESLTKHIYDDLGSPFANLIGECSERTVGTNATAIALAENVPVALVSSLSYQYWPAENG
VNTAAPIHNHQGEVMGGIHIGLKDIKRTQDAFWLVTYLAQVFDRLYLPMTQKHEKKIK
DIIDLLPQGVAYINNKKSIHYNEKFQTLVNLSKGKNSLKKVSEFFSQEDWTSIFACQE
IKADGKTLIINSNSLDYEDFETSKIFIVEEKQSLTQRLQENSQGSKTTVGLYSFDDIV
GNNAELNEAKSIGLNVAGTSVPVLIFGENGTGKEMFAQAIHAASPRREKPFIAINCGA
IPAELVESELFGYEEGSFTGALKGGKIGKIEAASGGTLFLDEIESMPVQDQIKLLRVI
STGKVQKVGSTKEIPVDIRLISATKKDLLEESDKGLFREDLYFRISTFIIELPALRQR
REDILLLTKEFISKFSRKYGLEQTVEMAQEFVEALENYSWRGNVRELEHSIERAIILM
GAGLTLKVDYLSKRIQESYQNYQVKGLVEDVLAKGLKKQEQGLLYTAEAMIIDHVLKS
VGGNVTAAAEKLGVTRKTIYNKLQEHPDLRVVK"
misc_feature 322536..323033
/locus_tag="DSY0286"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 322602..323018
/locus_tag="DSY0286"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:214640"
misc_feature 322617..322640
/locus_tag="DSY0286"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(322620..322643,322833..322835,322959..322961)
/locus_tag="DSY0286"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 322821..322838
/locus_tag="DSY0286"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 323016..323018
/locus_tag="DSY0286"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 323376..323486
/locus_tag="DSY0286"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene 323618..324004
/locus_tag="DSY0287"
/db_xref="GeneID:3955078"
CDS 323618..324004
/locus_tag="DSY0287"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516520.1"
/db_xref="GI:89893033"
/db_xref="GeneID:3955078"
/translation="MSKKGRFLLMFALFLSLSVGLFLSSAANTNAYPDLSPDGKTCTP
CHEEGTHGGEETPAETPGETPGETPAETPGETPAEQPAETPAEKPAETPAEQPAETHE
PMSPWIVVGGVIVILAVIYFLAIKKK"
gene complement(324134..326776)
/locus_tag="DSY0288"
/db_xref="GeneID:3955079"
CDS complement(324134..326776)
/locus_tag="DSY0288"
/note="similarity to COG0744 Membrane carboxypeptidase
(penicillin-binding protein)(Evalue: 1E-114)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516521.1"
/db_xref="GI:89893034"
/db_xref="GeneID:3955079"
/translation="MASPPKRTPSKRPRKKKRVSKLRVFLVSFGSVFTLACIALLIYV
LYVVAGTPDWHPDTLTNQKQTSFVYDMDGNQIAELHAAENRQMVDSSEIPQLVKDTFV
AVEDKRFNDHFGVDPIRIVGSFIADLKSQSWKEGASTITMQLANNAFIENPREKTLVR
KLQQAALAIQLEREYTKDEILTFYLNRIFFGESSFGIQAAAKTYFGKDLKALNPDEIA
LLAGLPQAPSGYNPYYHPEEAKKRRTIVLGVMKDSGLITADEYDQYKDAPFEHVENVK
ANRAESEKPVVAGTNYQYPYFVDHVIEELINEHGLTEDQIFNGGLRIYTTVDTKIQAA
AEKEFANAANFPQSVDETLVQGAMTVLDPKTGAIRALVGGRDHNTARGFNRATRASRQ
PGSTVKPLVVYAPALEKGGFFPGTVLDDMPVKYNAGNGQVWAPVNYDTEYAGWRGLIT
MRFAVQNSVNVYAVKLMNLVGIEYSWNFAKNSLGLPLEEGDKVLSLALGTNQMSTLDM
ASAYGVFANNGVRVAPHAIEKVQDANGKEVLVPQVTKERTMKETTAYLMNSMLRSVVT
GGTGTRAQIGNWAVAGKTGTTSLDPDIYGYRTGNPDAWFAGYTPEYVGVVWMGYDKDD
ETLTHYLHKVYGGQYPAQIWKNVMTAAHEGLTVQTEFQQPSGIVGGDFDTKSGLIPSS
LTPKDFIRREIAAQGDFPTRVSDVWVEKEIDKDHPEYLAGTGTVNKEKKVFLNITGRD
SETPWPSDEQPYKMPEKEYNETPPPNETTSPPAGDPSIPIPTLGAVAYDAAQSSVTIP
VAYPEGSEGLHLIVYVKFPDHDFVQPFSPDAQPGGSNQIHIPLSIEGEPISPGNYSFW
ACLQSPETGATGNPSPVAVLTITD"
misc_feature complement(326024..326563)
/locus_tag="DSY0288"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature complement(324815..326527)
/locus_tag="DSY0288"
/note="penicillin-binding protein, 1A family; Region:
PBP_1a_fam; TIGR02074"
/db_xref="CDD:233710"
misc_feature complement(324833..325711)
/locus_tag="DSY0288"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:216183"
gene 327061..328323
/locus_tag="DSY0289"
/db_xref="GeneID:3955080"
CDS 327061..328323
/locus_tag="DSY0289"
/note="similarity to COG0162 Tyrosyl-tRNA
synthetase(Evalue: 1E-154)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516522.1"
/db_xref="GI:89893035"
/db_xref="GeneID:3955080"
/translation="MNILDDLKARGLVYQTTDEEALYKRLESPMTLYCGFDPTADSLH
IGHLLPVLMLRRFQLAGHCPIALVGGGTGLIGDPSGKTSERTLNPTEVVQEWANRIKE
QLSCFLDFEGVGNPAIMANNYEWLGTINVIEFLRDIGKNFSLGSMLAKESVESRMSRG
ISFTEFSYQILQSYDFLKLNELYGCEMQIGGSDQWGNITSGTDLIRRMSVGEDRQVHG
LTVPLVTKSDGTKFGKTEGGAVWLDQDKTSPYKFYQFWINTDDRDVVKYLNFFTFLSI
EEIQGLAQEVESQPEKRNAQRMLAKEVTELVHGVEARERAEKISQALFTGGIANLTAK
EVEEGFSDVPSADVEDQEMLLVDALIKVGAVSSRRQARESMESGAVYVNGIRQTDTTL
TVAQLDKIESRFIVIRRGKKNYYLVKLV"
misc_feature 327061..328317
/locus_tag="DSY0289"
/note="tyrosyl-tRNA synthetase; Validated; Region:
PRK05912"
/db_xref="CDD:235645"
misc_feature 327148..327978
/locus_tag="DSY0289"
/note="catalytic core domain of tyrosinyl-tRNA synthetase;
Region: TyrRS_core; cd00805"
/db_xref="CDD:173902"
misc_feature order(327157..327159,327163..327171,327190..327192,
327196..327201,327562..327564,327574..327576,
327583..327585,327622..327624,327628..327633,
327640..327642,327727..327732,327751..327762)
/locus_tag="DSY0289"
/note="active site"
/db_xref="CDD:173902"
misc_feature 327190..327201
/locus_tag="DSY0289"
/note="HIGH motif; other site"
/db_xref="CDD:173902"
misc_feature order(327271..327273,327280..327285,327451..327456,
327460..327468,327475..327480,327484..327495,
327499..327504,327550..327552,327556..327561,
327568..327573)
/locus_tag="DSY0289"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173902"
misc_feature 327751..327765
/locus_tag="DSY0289"
/note="KMSKS motif; other site"
/db_xref="CDD:173902"
misc_feature 328123..328314
/locus_tag="DSY0289"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature order(328156..328161,328165..328170,328174..328179,
328186..328191,328195..328197,328216..328239,
328243..328245)
/locus_tag="DSY0289"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
gene 328920..330587
/locus_tag="DSY_16SrRNA2"
/db_xref="GeneID:3957998"
rRNA join(328920..329056,329094..330587)
/locus_tag="DSY_16SrRNA2"
/product="16S ribosomal RNA"
/db_xref="GeneID:3957998"
gene 331109..333611
/locus_tag="DSY_23SrRNA2"
/db_xref="GeneID:3958004"
rRNA 331109..333611
/locus_tag="DSY_23SrRNA2"
/product="23S ribosomal RNA"
/db_xref="GeneID:3958004"
gene 333997..334036
/locus_tag="DSY_5SrRNA2"
/db_xref="GeneID:3958010"
rRNA 333997..334036
/locus_tag="DSY_5SrRNA2"
/product="5S ribosomal RNA"
/db_xref="GeneID:3958010"
gene 334904..335725
/locus_tag="DSY0290"
/db_xref="GeneID:3955081"
CDS 334904..335725
/locus_tag="DSY0290"
/note="similarity to COG2207 AraC-type DNA-binding
domain-containing proteins(Evalue: 5E-50)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516523.1"
/db_xref="GI:89893036"
/db_xref="GeneID:3955081"
/translation="MEFELNELVERFTNISIRVEGVYNYKIDPGTAGWQKAAPFPGFI
FPLRGKAQYRFDGTPYTASIGRVVHGGASMGLDKQVLGDTKWEYISVLYDIRTSETKG
ICLPEVHFELTPGNSPRLQELLGRLYRTFNQPGSIPAFQAENLFRCVLEEVFVCARNQ
TNHGAQVLFEQVSSYIQDHFMDSLTVHGLAEQNEVTENRLFYVFSKYAGMGPGDYLIA
CRLNRAKELLTTIGAPISEVAKSIGYSDPLYFSRSFRKRFKMSPSEFREKFRNNP"
misc_feature 335375..335722
/locus_tag="DSY0290"
/note="AraC-type DNA-binding domain-containing proteins
[Transcription]; Region: AraC; COG2207"
/db_xref="CDD:225117"
misc_feature <335603..335701
/locus_tag="DSY0290"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
gene 335817..336827
/locus_tag="DSY0291"
/db_xref="GeneID:3955082"
CDS 335817..336827
/locus_tag="DSY0291"
/note="similarity to COG0614 ABC-type
cobalamin/Fe3+-siderophores transport systems, periplasmic
components(Evalue: 2E-30)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516524.1"
/db_xref="GI:89893037"
/db_xref="GeneID:3955082"
/translation="MEEGKKMKRIIGMIVSLALLAGLLAGCSTSATGSNINTPAAQAE
KTPGAGGSGAEEAAWPRTIVDATGKEITLTEQPQRIAILHSLYLEYFLALGTPPIASA
GASTGDAMKALGEWETLKPYAGTAKIIDLGSARDLNLEAILGANPDVIVTFKGQGNLD
KIYEQLEQIAPVILVDFSAPWQEQILACAEIVNKEADAQKLIKEIEDSVQSAKEKLSR
HQDKTIAIFRTDGGKAFVTRGNKDYYDTFGIAKPEGYPDDYETLSLEAVAEMNPDYII
FQDFITTSQAFVKTQEASSVWQAMEAVKKGQVVYFDDSLNTFGPLATKLTAEKLIQII
SD"
misc_feature 336039..336773
/locus_tag="DSY0291"
/note="Fe3+-siderophore binding domain FhuD. These
proteins have been shown to function as initial receptors
in ABC transport of Fe3+-siderophores in many eubacterial
species. They belong to the TroA-like superfamily of
helical backbone metal receptor proteins...; Region: FhuD;
cd01146"
/db_xref="CDD:238566"
misc_feature 336054..336761
/locus_tag="DSY0291"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:216532"
misc_feature order(336144..336146,336216..336221,336282..336284,
336522..336524)
/locus_tag="DSY0291"
/note="siderophore binding site; other site"
/db_xref="CDD:238566"
gene 337045..337545
/locus_tag="DSY0292"
/db_xref="GeneID:3955083"
CDS 337045..337545
/locus_tag="DSY0292"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516525.1"
/db_xref="GI:89893038"
/db_xref="GeneID:3955083"
/translation="MSSSKNNNVIDFQQYKEKRELQRAIPSAETSLENDFQGKLRLTQ
EDAEMIIYCMRLGREYFMIEVEKTPDEGGQAQRDFETVNSLLDRIQYEVLKLQTEEGY
IVGLSILELAFIIDCVEMTRNAVGKGINVFQSEPGDKEDYAKWLDGTFFYLLDVYEKW
RFYQGH"
gene complement(337571..338374)
/locus_tag="DSY0293"
/db_xref="GeneID:3955084"
CDS complement(337571..338374)
/locus_tag="DSY0293"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516526.1"
/db_xref="GI:89893039"
/db_xref="GeneID:3955084"
/translation="MQNLIVLGTGHALVTQCYNTCFALADDDDYILIDGGGGNGILSQ
LQKAKIPYAKIHHAFVSHGHTDHLLGMVWVIRMIGSAMAAGKYEGDFKLYCHDELASA
LHALVKITMDKQIIDLISRRIHIISVADGQQEELLGHTFTFFDLHSAKAKQFGFKIHL
DCDKKLAFIGDEPYHPLCQKYVENSDWLLCEAFCLYAERELFKPYEKNHSTVKDSCQL
ATLLNIKNLILWHTEDKNIGKRKALYTAEGKQYYKGNLFVPDDFDVIAL"
misc_feature complement(337574..338374)
/locus_tag="DSY0293"
/note="Metal-dependent hydrolases of the beta-lactamase
superfamily III [General function prediction only];
Region: ElaC; COG1234"
/db_xref="CDD:224155"
gene 338629..339420
/locus_tag="DSY0294"
/db_xref="GeneID:3955085"
CDS 338629..339420
/locus_tag="DSY0294"
/note="With Mot B forms the ion channels that couple
flagellar rotation to proton/sodium motive force across
the membrane and forms the stator elements of the rotary
flagellar machine."
/codon_start=1
/transl_table=11
/product="flagellar motor protein MotA"
/protein_id="YP_516527.1"
/db_xref="GI:89893040"
/db_xref="GeneID:3955085"
/translation="MELSTLIGLLLGFIAVGVGMILKGASLTALINPAAILIIIVGTI
ATIFIGFPMEDLKRVPKLFKILFTKQQLISKKELVKQFAEWTTVSRREGILSLENRLE
EINDDFLKKGMGMAIDGNDAEFIRDVLFEDISAMEERHRDGALVFTQMGTYAPTLGVL
GAVVGLISALSNLNEVEALGHLISAAFVATLLGIFTGYVLWHPMANKLKLFSRREAEI
KRMMLEGILSIQAGDNVNAIHNKLFAYLSAAERRELTEEMGNEKA"
misc_feature 338629..339414
/locus_tag="DSY0294"
/note="flagellar motor protein MotA; Validated; Region:
PRK08124"
/db_xref="CDD:181238"
misc_feature 338629..339366
/locus_tag="DSY0294"
/note="MotA/TolQ/ExbB proton channel family; Region:
MotA_ExbB; cl00568"
/db_xref="CDD:241954"
gene 339407..340201
/locus_tag="DSY0295"
/db_xref="GeneID:3955086"
CDS 339407..340201
/locus_tag="DSY0295"
/note="similarity to COG1360 Flagellar motor
protein(Evalue: 2E-57)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516528.1"
/db_xref="GI:89893041"
/db_xref="GeneID:3955086"
/translation="MKKHKKEHHEDHMDETWLVPYSDILTLLLALFIILFAAGQIDQK
KYERIMAGFNSAFTGGTSVFESTSELNIDITDDNMGKNNDPVTTETDSLLAAARARED
RDMSDMKAKIDQYIKENNLSAQLETRITEEMLMISIRDYALFDSGSALVKTEAQKLAY
IISDILRQYPGYNVEVAGHTDNLPINTAEFPTNWDLSSRRSLNFMKYLLQSDGLDQSR
FRSIGYGEFQPIATNTTEEGRAKNRRVEVNILRNFGQPTSIFSSER"
misc_feature 339452..340156
/locus_tag="DSY0295"
/note="flagellar motor protein MotB; Reviewed; Region:
motB; PRK07734"
/db_xref="CDD:236080"
misc_feature <339455..339577
/locus_tag="DSY0295"
/note="Membrane MotB of proton-channel complex MotA/MotB;
Region: MotB_plug; pfam13677"
/db_xref="CDD:222312"
misc_feature 339833..340153
/locus_tag="DSY0295"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature order(339842..339847,339944..339949,339968..339970,
339980..339985,339992..339994,340121..340123,
340133..340135)
/locus_tag="DSY0295"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
gene 340548..342215
/locus_tag="DSY_16SrRNA3"
/db_xref="GeneID:3957999"
rRNA join(340548..340684,340722..342215)
/locus_tag="DSY_16SrRNA3"
/product="16S ribosomal RNA"
/db_xref="GeneID:3957999"
gene 342446..342521
/locus_tag="DSY_tRNA13-Ala"
/db_xref="GeneID:3958019"
tRNA 342446..342521
/locus_tag="DSY_tRNA13-Ala"
/product="tRNA-Ala"
/db_xref="GeneID:3958019"
gene 342812..345314
/locus_tag="DSY_23SrRNA3"
/db_xref="GeneID:3958005"
rRNA 342812..345314
/locus_tag="DSY_23SrRNA3"
/product="23S ribosomal RNA"
/db_xref="GeneID:3958005"
gene 345701..345740
/locus_tag="DSY_5SrRNA3"
/db_xref="GeneID:3958011"
rRNA 345701..345740
/locus_tag="DSY_5SrRNA3"
/product="5S ribosomal RNA"
/db_xref="GeneID:3958011"
gene 346059..346835
/locus_tag="DSY0296"
/db_xref="GeneID:3955087"
CDS 346059..346835
/locus_tag="DSY0296"
/note="similarity to COG0730 Predicted permeases(Evalue:
5E-25)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516529.1"
/db_xref="GI:89893042"
/db_xref="GeneID:3955087"
/translation="MNIFMGLAIGLLSGFFGGLVGLGGGIIMIPLMVGLLKINQHMAH
GTSLVGVVFTGISGAITYSLSGSIELVPALLLASTAMITARLGARYATSLPEWKLKRS
FGYFLIFVTIVFLLKPYLGEFSLSSTVWIKTIILLGIGAFAGFLSGMMGVGGGSIMVP
AMVIFAGMGQQMAQGISLLAMIPASAIGAFTHNRNGNVHTKILPGLVVGILPGTFLGG
SLAHILPEVALRIIFAIVVVYTAIKNIRAKKPETAMEPST"
misc_feature 346179..346787
/locus_tag="DSY0296"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:216790"
gene 346832..347587
/locus_tag="DSY0297"
/db_xref="GeneID:3955088"
CDS 346832..347587
/locus_tag="DSY0297"
/note="similarity to COG3022 Uncharacterized BCR(Evalue:
7E-34)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516530.1"
/db_xref="GI:89893043"
/db_xref="GeneID:3955088"
/translation="MKIIISPAKKMNMDGDFLSPRNIPVYLEKAKKLQRHLQSLPYEE
LRKLLCCNDEIAGLNYERYQTMDLSGYTSPAILAYDGIQYKYMAPQVFEDDYFDYIEK
HLRILSGFYGILKPFDGVVPYRLEMQAKLKTDFCRNLYDYWQDDIYRELTQEDTTILN
LASAEYSKTIEKYLTAGINYVKCVFGELRDGRVIEKGVYVKMARGEMVRFMAEKAIKD
LEQIKEFNRLGFRYREQLSDNNTFVFVKAMAEK"
misc_feature 346832..347578
/locus_tag="DSY0297"
/note="hypothetical protein; Validated; Region: PRK02101"
/db_xref="CDD:234999"
gene 347622..348521
/locus_tag="DSY0298"
/db_xref="GeneID:3955089"
CDS 347622..348521
/locus_tag="DSY0298"
/note="similarity to COG1670 Acetyltransferases, including
N-acetylases of ribosomal proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516531.1"
/db_xref="GI:89893044"
/db_xref="GeneID:3955089"
/translation="MINSLADPSINLRESLDAKSYTHINNLQRLCLEHDRTNLKLELD
YKLSRAEGKPGSLKTINEFMCYEGELLIGYMGICDFGGEEIEVNGMVHPDYRKKGIFK
TLFSFAKNEWSKRRASRMLLLSDRDSLTGQAFIKRVSGVKYKHTEYEMFLQSDTKQEL
NSCKVVLRKATGNDTREIARQNFIYFEQESQDENMLIPEEEARAGMIIYMAEVNNCVI
GKVHLDISSNVGGIYGLGVLPEYRRKGYGRDILTLGIKELKSNNFQEIMLQVNVKNEK
ALDLYRSCGFEVTSTMDYYELKK"
misc_feature 347808..>347957
/locus_tag="DSY0298"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_7; pfam13508"
/db_xref="CDD:222185"
misc_feature order(347889..347891,347892..347894,347922..347927)
/locus_tag="DSY0298"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
misc_feature 348111..348482
/locus_tag="DSY0298"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:222034"
misc_feature 348243..348425
/locus_tag="DSY0298"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(348324..348332,348360..348365)
/locus_tag="DSY0298"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 348619..348975
/locus_tag="DSY0299"
/db_xref="GeneID:3955090"
CDS 348619..348975
/locus_tag="DSY0299"
/note="similarity to COG0526 Thiol-disulfide isomerase and
thioredoxins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516532.1"
/db_xref="GI:89893045"
/db_xref="GeneID:3955090"
/translation="MILIVRGVKIPMALKQLDSNSFEEIIYDNGEACLVLFSRKSCHV
CKEVGPMVEDLAPKYSGKFGFYYVDVEENMTLFQRFSLKGVPQILFFKDGEYQGKLSG
NVEEEVLEEKIAEIQA"
misc_feature 348679..348924
/locus_tag="DSY0299"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:239245"
misc_feature order(348742..348744,348751..348753)
/locus_tag="DSY0299"
/note="catalytic residues [active]"
/db_xref="CDD:239245"
gene complement(349076..349528)
/locus_tag="DSY0300"
/db_xref="GeneID:3956963"
CDS complement(349076..349528)
/locus_tag="DSY0300"
/note="similarity to COG1395 Predicted transcriptional
regulators"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516533.1"
/db_xref="GI:89893046"
/db_xref="GeneID:3956963"
/translation="MDKEKAIKLVSSKIKLIRVENGYSQDRMADIIGISKKTLVQIEK
GRDYASWGVVVATCAMFRESEIMQSIFGDDPLEVLRTIAHERIDSPKEKTMGGKIWWA
DVHKEGLFRLQQNLISKHYRILDDDGYRWFSSFDKEEALTRLFELSSS"
misc_feature complement(<349391..349501)
/locus_tag="DSY0300"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:224314"
misc_feature complement(349337..349498)
/locus_tag="DSY0300"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature complement(order(349397..349399,349472..349474,
349484..349486))
/locus_tag="DSY0300"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature complement(order(349400..349402,349475..349477))
/locus_tag="DSY0300"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature complement(order(349394..349399,349409..349411,
349418..349420,349451..349456))
/locus_tag="DSY0300"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
misc_feature complement(349121..349396)
/locus_tag="DSY0300"
/note="H3TH domains of structure-specific 5' nucleases (or
flap endonuclease-1-like) involved in DNA replication,
repair, and recombination; Region:
H3TH_StructSpec-5'-nucleases; cl14815"
/db_xref="CDD:246724"
misc_feature complement(order(349337..349339,349352..349360,
349388..349390,349394..349396))
/locus_tag="DSY0300"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:188616"
misc_feature complement(349388..349390)
/locus_tag="DSY0300"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:188616"
gene 349667..350272
/locus_tag="DSY0301"
/db_xref="GeneID:3956964"
CDS 349667..350272
/locus_tag="DSY0301"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516534.1"
/db_xref="GI:89893047"
/db_xref="GeneID:3956964"
/translation="MDMGKKRKIIIPAAVGLGLLIAGFAYLMQIRGEFKDYLSEKYPE
QTFQVGFIKIDPIYGSYFTTASCLNDDVSFPIRKSFRTENINESYLQTKSHNQYNAYI
KEVFNESGIKNHIISVTGGGKDHYQNDGHYDQINLYLTEEADLISVTKTALNLLREKG
VQADTVILTQEKDGHVYELYGSTADYALTEDQLREKIRKIK"
gene 350481..351143
/locus_tag="DSY0302"
/db_xref="GeneID:3956965"
CDS 350481..351143
/locus_tag="DSY0302"
/note="similarity to COG2206 HD-GYP domain(Evalue: 1E-38)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516535.1"
/db_xref="GI:89893048"
/db_xref="GeneID:3956965"
/translation="MLYRLMKRFSDYNILHDVIDCLTASLEAKDNYTSGHSNRVGDMA
FDICKSLKLSIVERDRIHIAAHLHDIGKIGIPDHILNKPGRLSPAEWAQIQGHPEIGY
TILSKSRKLKDIGQIVLSHHERWDGKGYPHGLKGEEIPLGARIIGVCDSIDAMTSDRA
YRKAFTWAECKAEIIANKGSQFDPEVVEAITDSLWSKWQMEYCKERERERSLGQGIQS
AT"
misc_feature <350556..351128
/locus_tag="DSY0302"
/note="c-di-GMP phosphodiesterase class II (HD-GYP domain)
[Signal transduction mechanisms]; Region: COG2206"
/db_xref="CDD:225116"
misc_feature 350574..351005
/locus_tag="DSY0302"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature order(350586..350588,350682..350687,350928..350930)
/locus_tag="DSY0302"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 350685..350687
/locus_tag="DSY0302"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
gene 351315..351764
/locus_tag="DSY0303"
/db_xref="GeneID:3956966"
CDS 351315..351764
/locus_tag="DSY0303"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516536.1"
/db_xref="GI:89893049"
/db_xref="GeneID:3956966"
/translation="MDINYAIKEVIRHHRQAVQKSAWEFIDVDTLYTLRDIAITVEDE
KFHVVGDSDKYYVMVRKSSMDNDVIMFGRVDGGNLEKTLARDIPKVGLAILAIRHIED
DHYIDDLLSARREELLDQLILCFGSERFNLADGTSFTLQELKQAVSH"
gene complement(352064..353533)
/locus_tag="DSY0304"
/db_xref="GeneID:3956967"
CDS complement(352064..353533)
/locus_tag="DSY0304"
/note="similarity to COG2855 Uncharacterized membrane
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516537.1"
/db_xref="GI:89893050"
/db_xref="GeneID:3956967"
/translation="MSTNTYARKKALQNEDWWAAWLGLFIFALGLGPYFGADLLGWVT
KASVWIEPAKAFAPVSKATGLNGFTSLLVTFLFVLAITTVAAKFVGSNLKKYAIGFSI
IFWVTMGCLMLGNIAYIGATPDKTASYGIGWSLGLGEMGYIIAMVVGLIIGNFFIKQA
DFLKEAAKPELFIKIGIVVLGASIAIKTLDAFGLATTIIIRGLCAVVEAYLIYWPVVY
LIARKFFKFTPEWAAPLASGISICGVSAAIATGSAIRARPVIPVILSAVIIVFVALEL
LLLPWLAQAFLFKDPMVAGAWMGLAVKSDGGAIASGAITDSLIRGRALRELGINWEEG
WILMVATTTKVFIDIFIGVWAFILAIIWSVFPIDKNASANPGERNKVSAVDIWDRFPK
FIIGFVLTFLILFLVGVNNPDGVKALSTGVNEGNAFRTIFFGLCFFSIGLVTNVRKLW
AEGMGRIVAIYGIALFGFILWFGLFISWLFYHGITPPTV"
misc_feature complement(352187..353107)
/locus_tag="DSY0304"
/note="Conserved hypothetical protein 698; Region:
Cons_hypoth698; cl01075"
/db_xref="CDD:242287"
gene 354352..355251
/locus_tag="DSY0305"
/db_xref="GeneID:3956968"
CDS 354352..355251
/locus_tag="DSY0305"
/note="similarity to COG2181 Nitrate reductase gamma
subunit(Evalue: 2E-55)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516538.1"
/db_xref="GI:89893051"
/db_xref="GeneID:3956968"
/translation="MFLVFYAILAMFLFLALSAYKAYEYTKMPMHGRLDLYPVPKEKG
HEHGGSYYEQAEWWAKPHETSTASEIVDMLKEILFIKKLFQNQKSLWWLSYSLHLGIY
FIIAWTVILVAAAATQLAGGTVAADGGLWGILLYYATPLVGWVGFFLASFGAVSLLVR
RVADPILKKYTTPQEYFNLLLLFVVTLTGVLVWSSDITMSNARDAMANVLSFQPLNGE
PLLTVHIILAGIMLIYIPISKMSHYVGKFFSFHMVIWDNDPNVAGSKVEEKIRQAAQY
RPQNKWSAPHIAGAPAPTEKSPK"
misc_feature 354376..355200
/locus_tag="DSY0305"
/note="Nitrate reductase gamma subunit; Region:
Nitrate_red_gam; cl00959"
/db_xref="CDD:242222"
gene 355285..356898
/locus_tag="DSY0306"
/db_xref="GeneID:3956969"
CDS 355285..356898
/locus_tag="DSY0306"
/note="similarity to COG0247 Fe-S oxidoreductases(Evalue:
0)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516539.1"
/db_xref="GI:89893052"
/db_xref="GeneID:3956969"
/translation="MINHKDLKPSDLNRPDEQLVKVEELMPLPRPYDKPGMEPDFMEV
KPAWREKYCTSLDGFVAIDTLTRPKSKEEEEEFVRKFLSGLEKLFTDANNGMRQPLML
SFEYCAKCDTCSNACHIYEGSGNNELYRPIFRVEALRKIYKKYFTTSGKLLGGLVGAD
LEATWESIARLGESAYRCNLCRRCAQTCPLGLDNGIMAKEIRKIFSMEMGIAPSPIHK
KGTENQLKTGSSTGLTKPAFLDIVEFLEEEMDEKFGLKIKFPIDKKGADILLMHNAGE
YRAWPENPIAFAILFEAAGIDWTISSEMMGYDSVNYGIWYDDAQAKKIALAQMKVAKD
LGVRRVVQGECGHAHKAAAVSADRMAPGSDKVPVESFFPLLRDIVKSGAIKFDPSRNN
FPVTLHDPCNVVRQMGIVMPQREVLHQLAPQFREMTPHGVDNYCCGGGSGFAIMHSQN
FGDFLKKISARKKFAQILNAFQDTIEDPQIVKYICAPCSNCKGTMRDILEYYEATDKF
NVQYGGLIELVVNAMADLKRPFFEFLEEE"
misc_feature 355576..356808
/locus_tag="DSY0306"
/note="Fe-S oxidoreductase [Energy production and
conversion]; Region: GlpC; COG0247"
/db_xref="CDD:223325"
misc_feature 356467..356772
/locus_tag="DSY0306"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene 356945..358639
/locus_tag="DSY0307"
/db_xref="GeneID:3956970"
CDS 356945..358639
/locus_tag="DSY0307"
/note="similarity to COG0446 Uncharacterized
NAD(FAD)-dependent dehydrogenases(Evalue: 1E-105)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516540.1"
/db_xref="GI:89893053"
/db_xref="GeneID:3956970"
/translation="MKVVIIGGVATGPKVAARLRRLSIDAEITVVEKGKIVSYGSCGL
PLFLGNLVPKIEDLMKTSAGLIRDTQYFEDTKGINVLTQTEALAIDRQQKKVRVRNLA
TGEERDLDYDHLVLATGAKEVVPPIPGIQYQNVYTLHSLDDAVNIKALIKEKKIQHAT
IIGAGLIGIEVADAIAGPRLKVTLFESQGSVVPKLLDPDMALLVEHKMRSRGIDLRLN
CPVKELTGDEDGKVNGVILENESITTGLVIVAVGVRPEVTLARQAGLTLGITGAIQVN
QYMQTDDTYIYAGGDCAEQVNMLSGRQVFVPLASTANKQGRVIADNIAGRASEFPAIC
ATSVFQAFELNVGRTGLGEPEARELGYDVITSLSTGLDAVHYYPVHGAVTIKLIAERT
SGRLLGAQVCGTGEAIKRLDVLITILRFNGTVKDISNLDLSYAPPFATAIDVLIHAAN
TLENKQLGIVDTVNPFELLERLKKDKSIIFVDVREGDETRANPVEGSQIIVIPLGELR
KRYTEIPQGSPVVTFCELGIRGYDAACFLKGVGFQDVSFLEGGMSTWGALQPALNM"
misc_feature 356945..358294
/locus_tag="DSY0307"
/note="coenzyme A disulfide reductase; Reviewed; Region:
PRK09564"
/db_xref="CDD:181958"
misc_feature <357152..357499
/locus_tag="DSY0307"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; cl17500"
/db_xref="CDD:248054"
misc_feature 357416..357667
/locus_tag="DSY0307"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
misc_feature 357947..358270
/locus_tag="DSY0307"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:217252"
misc_feature 358343..358609
/locus_tag="DSY0307"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cd00158"
/db_xref="CDD:238089"
misc_feature 358514..358516
/locus_tag="DSY0307"
/note="active site residue [active]"
/db_xref="CDD:238089"
gene 358777..358965
/locus_tag="DSY0308"
/db_xref="GeneID:3956971"
CDS 358777..358965
/locus_tag="DSY0308"
/note="similarity to COG1146 Ferredoxin 3"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516541.1"
/db_xref="GI:89893054"
/db_xref="GeneID:3956971"
/translation="MFIITIDPDSCSGCDACADSCPAHLLKFNGEITEVVGDETECMG
CESCVSVCPTGAASIMEM"
misc_feature 358879..358944
/locus_tag="DSY0308"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:243197"
gene 359005..360198
/gene="dsrA"
/locus_tag="DSY0309"
/db_xref="GeneID:3958164"
CDS 359005..360198
/gene="dsrA"
/locus_tag="DSY0309"
/EC_number="1.8.99.3"
/note="similarity to COG2221 Oxidoreductase related to
nitrite reductase(Evalue: 1E-140)"
/codon_start=1
/transl_table=11
/product="sulfite reductase dissimilatory-type subunit
alpha"
/protein_id="YP_516542.1"
/db_xref="GI:89893055"
/db_xref="GeneID:3958164"
/translation="MAEKRTPQLDELEKGQWPSFVTEIKKAAVKNEASKELLHLLERS
YEEKRGHWKHGGIVGVKGYGGGVIGRYTDLPEDYPNLAAFHTVRINSPSGWFYNTKSL
RTICDIWEKRGSGLMNFHGATGDAILLGTTTDQLQPIFDELSEGGFDLGGSGSDLRSP
SCCVGPGRCEHACYDTLEACYNITNQYQDELHRPMWPYKFKIKFSGCANDCTAAIARS
DCAVIGTWRDTLTIDQEAVKAYVAEGLNIQAVVCDRCPTKCLKFDAETQELSVIAEEC
TRCMHCINRMPKAIAPGKERGATILLGGKSTIVQSAFMGWVIVPFMKMEVEDDFQEFK
DMIERIWEWWDENGKTRERIGETIYRLGMTNFLTSVGLPAVPQMVYRPRANPYVFWPE
DEIKK"
misc_feature 359029..360195
/gene="dsrA"
/locus_tag="DSY0309"
/note="sulfite reductase, dissimilatory-type alpha
subunit; Region: dsrA; TIGR02064"
/db_xref="CDD:233704"
misc_feature 359257..359424
/gene="dsrA"
/locus_tag="DSY0309"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:217572"
gene 360212..361270
/gene="dsrB"
/locus_tag="DSY0310"
/db_xref="GeneID:3958165"
CDS 360212..361270
/gene="dsrB"
/locus_tag="DSY0310"
/EC_number="1.8.99.3"
/note="similarity to COG2221 Oxidoreductase related to
nitrite reductase(Evalue: 1E-124)"
/codon_start=1
/transl_table=11
/product="sulfite reductase dissimilatory-type subunit
beta"
/protein_id="YP_516543.1"
/db_xref="GI:89893056"
/db_xref="GeneID:3958165"
/translation="MAILDQGPLNYKEQLPPIIKENYGKWRYHENPKAGVLKHVSESG
AELYSIRVGSPRLVSLDFIREICNLADEYCDGYLRFTARHNVEFLVSDAAKVEPLIAA
LGAKGLPVGGTGASVSNIVHTQGWVHCHTPATDASGVVKAVMDDLYEYFVSMKLPAQM
KISLACCLNMCGAAHCSDIAIVGVHRTPPRIDHDKIRKGTEIPSLVASCPTGAIRPNP
KEKSVVVNDAKCMYCGNCYTMAPGMEIIDPQNDGIAILVGGKVANARTNPMFSRMVIP
FLPNNPPRWPEVTDAIRNIVETWAANANKGEKMGEWIERIGWERFFSLTGIEFSDKLI
DDFIFSRETFRTSAAFKY"
misc_feature 360263..361267
/gene="dsrB"
/locus_tag="DSY0310"
/note="sulfite reductase, dissimilatory-type beta subunit;
Region: dsrB; TIGR02066"
/db_xref="CDD:131121"
misc_feature 360326..360526
/gene="dsrB"
/locus_tag="DSY0310"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:217572"
gene 361637..362227
/locus_tag="DSY0311"
/db_xref="GeneID:3956972"
CDS 361637..362227
/locus_tag="DSY0311"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516544.1"
/db_xref="GI:89893057"
/db_xref="GeneID:3956972"
/translation="MDKTLRSLLTEKQDLIIEKWCREIINTYPKETAKFLKEKRDEFA
NPIGNTISQGIEQTFTALIQESKENEVHLFLKDMIKVRAVQSFTASQAVSFVFLLKRI
IREELGKVAEEERIAKALLDFETQIDQLALASFDIYSECRDKLADLKTMEIRNQTYRL
LQQANLLTLRSDMEPEEPHSEPEPFRVNTKRKEVVT"
misc_feature 361646..361963
/locus_tag="DSY0311"
/note="RsbT co-antagonist protein rsbRD N-terminal domain;
Region: RsbRD_N; pfam14361"
/db_xref="CDD:206529"
gene 362224..363225
/gene="hmeC"
/locus_tag="DSY0312"
/db_xref="GeneID:3958179"
CDS 362224..363225
/gene="hmeC"
/locus_tag="DSY0312"
/note="similarity to COG2181 Nitrate reductase gamma
subunit(Evalue: 8E-67)"
/codon_start=1
/transl_table=11
/product="Hdr-like menaquinol oxidoreductase cytochrome b
like subunit"
/protein_id="YP_516545.1"
/db_xref="GI:89893058"
/db_xref="GeneID:3958179"
/translation="MKALFSLIAVLILMLIPLVGVGLANLQGLFGIVLPYLALILFLG
GFIYRIMGWARTPVPFRIPTTVGQGKSFDWIKQNKIENPTSNLGVIIRMAMEVLLFRS
LFRNSKTELRNGENGPQLAHGSNKWLWLFGLMFHWSLLIILIRHLRLFLEPVPAVISS
LDSLDSFFQIGLPALYITDMLIVAALTFLFLRRVVAPQVRYISLAADYFPLFLLMGIA
ATGILMRYIFRVDIASIKEFAVGLLTFTPHIPDGIGTIFYIHLFFVSCLFAYFPLSKL
MHMGGIFMNPTRNMKSNNRMVRHINPWNYPVEVHTYEEYEDDFRTKMIKAGIPVEKE"
misc_feature 362593..363066
/gene="hmeC"
/locus_tag="DSY0312"
/note="Nitrate reductase gamma subunit; Region:
Nitrate_red_gam; cl00959"
/db_xref="CDD:242222"
gene 363235..364863
/gene="hmeD"
/locus_tag="DSY0313"
/db_xref="GeneID:3958180"
CDS 363235..364863
/gene="hmeD"
/locus_tag="DSY0313"
/note="similarity to COG0247 Fe-S oxidoreductases(Evalue:
1E-150)"
/codon_start=1
/transl_table=11
/product="Hdr-like menaquinol oxidoreductase iron-sulfur
subunit 2"
/protein_id="YP_516546.1"
/db_xref="GI:89893059"
/db_xref="GeneID:3958180"
/translation="MAKYKLPKSEELSKIDYKPGSTEWMDTPVTTPFEPGTFCWGAKG
KNLETVGFPNARDWSPVDEDWQLPENWKSTVIEGIGERLTKYRSFKIMMDICVRCGAC
ADKCHFYIGSGDPKNMPVLRAELLRSVYRRYFTPSGKFLGRLAGARDLTPEVIKEWWY
YFYQCTECRRCSVFCPYGIDQAEITIIGRELLNLLGLNIDWIAGPVANCYMKGNHLGL
EPHAITGNIEMMCDDIEDITGVRVEPTFNRKGAEILFVTPSGDLMGDPGIYTCMGYLM
LFHELGLDYTWSTYASEGGNFGFFTSNEMAKRLNSKIYAEAKRLGVKYIIGGECGHMW
RVVNQYMGTWNEPADFLEVPVSPITGTRFDNAASTKMIHITEFTADLIKHGKLKLDPS
RNDHLKVTYHDSCNTSRGMGLLEEPRYIINNVCSNFYEMPESTIREKTFCCGSGSGLN
ASENMEERMRGGFPRANAVKYVQDKHGVNMLANICAVDRAALPALMDYWAPGVGVIGV
HELVANALVMTGEKERTTDLRGEDLPEKGVTADE"
misc_feature 363514..364782
/gene="hmeD"
/locus_tag="DSY0313"
/note="Fe-S oxidoreductase [Energy production and
conversion]; Region: GlpC; COG0247"
/db_xref="CDD:223325"
misc_feature 364429..364692
/gene="hmeD"
/locus_tag="DSY0313"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene 364856..365299
/gene="hmeE"
/locus_tag="DSY0314"
/db_xref="GeneID:3958181"
CDS 364856..365299
/gene="hmeE"
/locus_tag="DSY0314"
/codon_start=1
/transl_table=11
/product="Hdr-like menaquinol oxidoreductase cytochrome c
subunit"
/protein_id="YP_516547.1"
/db_xref="GI:89893060"
/db_xref="GeneID:3958181"
/translation="MSKGGKTIGGLLIFVVIAIMPFLYNMGKADAKPEINTDTPVIRE
LGATQCIEGTEYMRENHMHLLLEWRDAVVREGKTTYTNSQGEQFEMSLQNTCLNCHND
TPETVYYTAETANQGDNQFCYSCHNYAAVEPDCWACHAGPREAEK"
gene 365296..366090
/gene="hmeA"
/locus_tag="DSY0315"
/db_xref="GeneID:3958177"
CDS 365296..366090
/gene="hmeA"
/locus_tag="DSY0315"
/note="similarity to COG0437 Fe-S-cluster-containing
hydrogenase components 1(Evalue: 1E-49)"
/codon_start=1
/transl_table=11
/product="Hdr-like menaquinol oxidoreductase iron-sulfur
subunit 1 precursor"
/protein_id="YP_516548.1"
/db_xref="GI:89893061"
/db_xref="GeneID:3958177"
/translation="MSINRREFLKKAGVIAALGLGGAVTLDAFELLEPLKAADFTSEN
KLAAQRWAMVIDMSKLSQADIDEIIKGCHELHNVPDMGNEKDEIKWIWTDTYEHVFPG
DENHYLDEKTKTMPFLTLCNHCDHPPCVRVCPTQATFRREDGVVGMDMHRCIGCRFCM
AACPYGARSFNYWDPKPHLAKINPEYPHRSKGVVEKCTFCMERLDQGLAPVCVEKSKG
AIVYGDLEDPNSAVRKVLSTHYSIRRKPELGSQPSVYYLIGGEERA"
misc_feature 365443..366081
/gene="hmeA"
/locus_tag="DSY0315"
/note="Fe-S-cluster-containing hydrogenase components 1
[Energy production and conversion]; Region: HybA; COG0437"
/db_xref="CDD:223514"
misc_feature 365728..365796
/gene="hmeA"
/locus_tag="DSY0315"
/note="4Fe-4S binding domain; Region: Fer4_6; pfam12837"
/db_xref="CDD:205098"
gene 366074..367234
/gene="hmeB"
/locus_tag="DSY0316"
/db_xref="GeneID:3958178"
CDS 366074..367234
/gene="hmeB"
/locus_tag="DSY0316"
/note="similarity to COG3301 Formate-dependent nitrite
reductase, membrane component"
/codon_start=1
/transl_table=11
/product="Hdr-like menaquinol oxidoreductase integral
membrane subunit"
/protein_id="YP_516549.1"
/db_xref="GI:89893062"
/db_xref="GeneID:3958178"
/translation="MRSVLEKSLSGSKKYWLWVGFLLVVILGGFLAYLRQYNEGLGVT
GMSRDVSWGLYISQFTFLVGVAASAVMVAIPYYLHNYKKFGKIVILGEFLAVPSVIMC
ILFIFVDVGRPDRILNVLLHPTPHSVMFWDMCVLCGYLLLNLVIGWTALGSERKGFPP
PAWVKPLIYLSIPWAVSIHTVTAFLYSGMPGRHLWLTAIMAARFLASAFAAGPALLIL
LCMIVRKVSTFDPGKEAIQSLAKIVTYAMIANVFFYILEFFTAFYSNIPGHMHPLQYL
FAGLHGHGQLVPFMWVAVVLAFVGIFLLVVPKFRRNEKILPFALLSVFIAAWIDKGLG
LVLGGFVPTPLEHVVEYTPTATELAVTLMVYAIGALLITILYKVVIGVREEI"
misc_feature 366170..367204
/gene="hmeB"
/locus_tag="DSY0316"
/note="Polysulphide reductase [Energy production and
conversion]; Region: COG5557; cl17901"
/db_xref="CDD:248455"
gene 367281..367598
/locus_tag="DSY0317"
/db_xref="GeneID:3956973"
CDS 367281..367598
/locus_tag="DSY0317"
/note="similarity to COG2920 Sulfite reductase, gamma
subunit(Evalue: 6E-29)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516550.1"
/db_xref="GI:89893063"
/db_xref="GeneID:3956973"
/translation="MADLVVNGVSYELDEDGFLEDAAEWNEDVAKALAPNEDVEELTE
EHWRVINYLRDYYDQYGVAPMVRKLLKDTGYDQKTIYNLFPTGPGKGACKIAGLPKPT
GCV"
misc_feature 367281..367595
/locus_tag="DSY0317"
/note="Dissimilatory sulfite reductase (desulfoviridin),
gamma subunit [Inorganic ion transport and metabolism];
Region: DsrC; COG2920"
/db_xref="CDD:225472"
misc_feature 367290..367595
/locus_tag="DSY0317"
/note="DsrC like protein; Region: DsrC; pfam04358"
/db_xref="CDD:146805"
gene 367765..369207
/gene="cobB"
/locus_tag="DSY0318"
/db_xref="GeneID:3958094"
CDS 367765..369207
/gene="cobB"
/locus_tag="DSY0318"
/note="similarity to COG1797 Cobyrinic acid a,c-diamide
synthase(Evalue: 1E-99)"
/codon_start=1
/transl_table=11
/product="cobyrinic acid a,c-diamide synthase"
/protein_id="YP_516551.1"
/db_xref="GI:89893064"
/db_xref="GeneID:3958094"
/translation="MSTLSTPRLVIGAPQGRSGKTTFTLGLLRALSRQGLPVQPYKKG
PDYIDTSWHTAAAGRVSRNLDSFMMSQEDICRSLAQHSQDCQFSLIEGAMGLFDGLDI
NGSASTAEIAKITSSPVLLVLDATRITRSLGAIVMGCQHFDPNINIVGVVLNKIARAR
HEKLARETIEQYCRIPVVGAIPKDSRILIPDRHLGLVTNGEWSETDTFLDNLADVVSE
NVDIAKIMELARTAAPLSYSTPTKFSVSQGYPLKTKPPAPRIGVIRDAAFSFYYPENL
AVLESKGAELVTVSALSHQHLPKDLDALYIGGGFPEVFAEQLANNRTLRQEIRLAGED
GLPIYAECGGLMFLGRSIITGDGSYDMVGLLPLDTRMEKKPQGHGYTVMKVLENNPWF
RQPKIRGHEFHNSSVLNLDRTKIEFGFEVERGHGIDGKYEGICYKGVMAAYNHIHALG
SPDWAECMVKLATQYKERRSKMVFELFKSS"
misc_feature 367777..369159
/gene="cobB"
/locus_tag="DSY0318"
/note="cobyrinic acid a,c-diamide synthase; Validated;
Region: PRK01077"
/db_xref="CDD:234896"
misc_feature 367819..368313
/gene="cobB"
/locus_tag="DSY0318"
/note="dithiobiotin synthetase; Reviewed; Region: bioD;
PRK00090"
/db_xref="CDD:234625"
misc_feature 368542..369132
/gene="cobB"
/locus_tag="DSY0318"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyrinic Acid a,c-Diamide Synthase; Region:
GATase1_CobB; cd03130"
/db_xref="CDD:153224"
misc_feature order(368788..368790,369103..369105,369109..369111)
/gene="cobB"
/locus_tag="DSY0318"
/note="catalytic triad [active]"
/db_xref="CDD:153224"
gene 369386..370375
/locus_tag="DSY0319"
/db_xref="GeneID:3956974"
CDS 369386..370375
/locus_tag="DSY0319"
/note="similarity to COG0583 Transcriptional
regulator(Evalue: 3E-40)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516552.1"
/db_xref="GI:89893065"
/db_xref="GeneID:3956974"
/translation="MGKERRLLFEQQFVVFKEVADTKNITLAAKRLHMSQPSISLQIQ
NMENLYGARFFNRTNKGVTLTKAGEVFYDHVNNILNILTVAQQQISVLTEDQRALIYI
GATLTIGEYILPNILAYLYKIRPDVDFKVKIANTETISQEVIEKRIHIGLIEGPAPRN
KEIVVEKFWQDELVVVVPSFHPWAARHSITLAELAKERLIMREEGSGTRKVTELALKE
MGLDLSQINVTMELGSTQAIKKVVAAGIGITIISSLTVSRECENGLFKVLKVQDSPVY
RPLNMLTLAHTTQTKDERFLISMLHDRDLLEAIINGNCEDDKELYPCGDCLEA"
misc_feature 369416..370294
/locus_tag="DSY0319"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 369416..369592
/locus_tag="DSY0319"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 369683..370285
/locus_tag="DSY0319"
/note="C-terminal substrate binding domain of LysR-type
transcriptional regulator CysL, which activates the
transcription of the cysJI operon encoding sulfite
reductase, contains the type 2 periplasmic binding fold;
Region: PBP2_CysL_like; cd08420"
/db_xref="CDD:176112"
misc_feature order(369725..369730,369734..369739,369746..369748,
369758..369760,369764..369784,370070..370087,
370103..370108,370112..370117)
/locus_tag="DSY0319"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176112"
gene 370423..371292
/locus_tag="DSY0320"
/db_xref="GeneID:3956975"
CDS 370423..371292
/locus_tag="DSY0320"
/note="similarity to COG0388 Predicted
amidohydrolase(Evalue: 3E-29)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516553.1"
/db_xref="GI:89893066"
/db_xref="GeneID:3956975"
/translation="MLQDIRIGLAQFEAKVGDTERNLQEIIRTAEVASSQGVSLLCYP
ECALHGYSPKDASEIADPLDSMAVARLRECARDLGLILLVGMVEKSPEGKKPYISQLI
VFPDREPEVYRKVHLGRIEQHYFTAGDSFPIFAAGGVKFSIGICWDWHFPELSAICSL
KGAEIQFAPHASPVVSGDRKEIWKRYLGARAYDNSVYLCACNLVGTNNRDKEFSGGIL
VFGPKGEVLAENQDTQEQLFVVDLPAKPINTLRSPKRQSMRDTFFLADRRKELYKELL
ELEIEKMPQMSHD"
misc_feature 370435..371148
/locus_tag="DSY0320"
/note="N-carbamoylputrescine amidase; Region:
agmatine_aguB; TIGR03381"
/db_xref="CDD:188311"
misc_feature 370438..371226
/locus_tag="DSY0320"
/note="Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases); Region:
nitrilase_7; cd07585"
/db_xref="CDD:143609"
misc_feature order(370555..370557,370762..370764,370774..370776,
370786..370788,370858..370863,370867..370872,
370933..370935)
/locus_tag="DSY0320"
/note="putative active site [active]"
/db_xref="CDD:143609"
misc_feature order(370555..370557,370762..370764,370858..370860)
/locus_tag="DSY0320"
/note="catalytic triad [active]"
/db_xref="CDD:143609"
misc_feature order(370765..370776,370783..370785,370801..370809,
370861..370863,370867..370881,370888..370893,
370975..370980,370984..370992,370996..371001,
371065..371070,371215..371226)
/locus_tag="DSY0320"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143609"
gene 371769..372233
/gene="nrdR"
/locus_tag="DSY0321"
/db_xref="GeneID:3956976"
CDS 371769..372233
/gene="nrdR"
/locus_tag="DSY0321"
/note="similarity to COG1327 Predicted transcriptional
regulator, consists of a Zn-ribbon and ATP-cone
domains(Evalue: 8E-48)"
/codon_start=1
/transl_table=11
/product="NrdR family transcriptional regulator"
/protein_id="YP_516554.1"
/db_xref="GI:89893067"
/db_xref="GeneID:3956976"
/translation="MHCPFCGNDETKVLESRQVEEGTAVRRRRECERCARRFTTFEKF
EDTPLIVVKKDGRREEFSRGKLKAGILRACEKRPVSIEQIETLVYEIEKGLRNGSERE
VQSKAIGEAVMNALVHLDEVAYIRFASVYREFKDVQRFLEELHELVEKKSSR"
misc_feature 371769..372230
/gene="nrdR"
/locus_tag="DSY0321"
/note="transcriptional regulator NrdR; Validated; Region:
nrdR; PRK00464"
/db_xref="CDD:234774"
misc_feature 371913..372179
/gene="nrdR"
/locus_tag="DSY0321"
/note="ATP cone domain; Region: ATP-cone; pfam03477"
/db_xref="CDD:217585"
gene 372378..375839
/locus_tag="DSY0322"
/db_xref="GeneID:3956977"
CDS 372378..375839
/locus_tag="DSY0322"
/note="similarity to COG0209 Ribonucleotide reductase
alpha subunit(Evalue: 1E-137)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516555.1"
/db_xref="GI:89893068"
/db_xref="GeneID:3956977"
/translation="MSFQESAPKAWLKANLTPNARVILEKRYLKQENGEVAESPEDML
YRVASIIAQVEETFGKTKKEVKELAKSFYEMMAKLEFMPNSPTLMNAGRDLGQLSACF
VLPVEDSMEEIFDAIKSAAIIHKSGGGTGFSFSRLRPKNSTVRSTGGVASGPVSFMKV
FNAATEAVKQGGTRRGANMGILRVDHPDIREFITCKEDNKEITNFNISVGITEEFMKA
VQEKRHYNLIDPHTKEADGQLYAPEVFQLIVDHAWRNGEPGIIFLDRLNRDNPTPQLG
EIEATNPCVTGDTWVLTEEGAAQVRDLLGSQVKLALNGEYHETSKEGFFATGVKQVLT
LKTQQGYELKVTADHLVRVASDMTRYKVTQEWKPAGELKPGDTIVLSNNRSIQWQGKG
TKEEGYLLGLLLGDGTLKEEGAVISVWGEGEEAKSMMEAAEKAAFSLTHRQDFQGFQK
EISERHEHRMRFAALRDLAQQYGILPGSKAITQELEKTGQDFYQGLLRGLYDTDGTVT
GTQEKGVSVRLWQTDLAGLKVVQRMLQRLGIISTLYEERKPAGQKLMPDGQGGSKEYP
VQAGHELVISQDNIEIFAEKVGFSNSKKAQLLAEKLNVYQRSLNRERFVDNIVACVPG
DAEEVFDAQVPGINAFDANGIYVHNCGEQPLLPNEACNLGSINLKLMVTEKNGKVVVD
WERLGQITRLATRFLDNVIEANTYPLPSIEEMVKGNRKIGLGVMGFADMLILLQTSYA
SEDAVEYAEKVMNFIQTEARLESQRLAEERGTFPNYQGSIYDGVRPLRNATLTTIAPT
GTISMICGASSGVEPLFAVAYTKTVMDGTPLIEVNPIFQSLAEDYGFNSPELMRKIAE
KGTVLGFPEVPNWVQEVFVTAQEIEPEWHIRIQAAFQKYTDNAVSKTINFANEATHED
IAKAYELAHELNCKGLTVYRDGSREEQVLSTGITKKAEEKAEEAKTQVSIPKVPFIPE
VNTVLPRPRPTTTTGVTEKIRIGCGNLYVSVMADEKGICEIFTNTGRAGGCSSQSEAT
ARLISIALRSGISVDAIIEQVKGIRCPACIRREGVNVTSCPDAIARVIKEYVELGKGK
VNSVKVTSQPAVEEKPVQSKSASITNPQKTRATVAEGNACPECGMSINHESGCVVCTH
CGYSKCG"
misc_feature 372420..372665
/locus_tag="DSY0322"
/note="Ribonucleotide reductase, all-alpha domain; Region:
Ribonuc_red_lgN; pfam00317"
/db_xref="CDD:215855"
misc_feature 372582..>373229
/locus_tag="DSY0322"
/note="Class II ribonucleotide reductase, dimeric form;
Region: RNR_II_dimer; cd02888"
/db_xref="CDD:153089"
misc_feature order(372627..372632,372675..372677,372756..372764,
372897..372902,372906..372908,373221..373229)
/locus_tag="DSY0322"
/note="active site"
/db_xref="CDD:153089"
misc_feature order(372660..372662,372705..372710,372717..372722,
372726..372731,372738..372743,372750..372752,
372804..372806,372813..372824,372831..372833,
372846..372848,372855..372857,372864..372869,
372876..372878,372882..372890,372894..372896)
/locus_tag="DSY0322"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153089"
misc_feature order(372699..372701,372702..372707,372714..372716,
372750..372752,372789..372791,372807..372809,
372813..372815,372828..372833,372846..372848,
372876..372884)
/locus_tag="DSY0322"
/note="effector binding site; other site"
/db_xref="CDD:153089"
misc_feature 373227..>373535
/locus_tag="DSY0322"
/note="Hedgehog/Intein domain, found in Hedgehog proteins
as well as proteins which contain inteins and undergo
protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In
protein splicing an intervening polypeptide sequence - the
intein - is excised from a protein; Region: Hint; cd00081"
/db_xref="CDD:238035"
misc_feature order(373227..373229,373413..373415,373422..373424)
/locus_tag="DSY0322"
/note="thioester formation/cholesterol transfer; other
site"
/db_xref="CDD:238035"
misc_feature order(373227..373229,373422..373424)
/locus_tag="DSY0322"
/note="protein-splicing catalytic site; other site"
/db_xref="CDD:238035"
misc_feature <373848..374324
/locus_tag="DSY0322"
/note="Intein/homing endonuclease [DNA replication,
recombination, and repair]; Region: COG1372"
/db_xref="CDD:224291"
misc_feature <374325..375179
/locus_tag="DSY0322"
/note="Ribonucleotide reductase, barrel domain; Region:
Ribonuc_red_lgC; pfam02867"
/db_xref="CDD:217257"
misc_feature 375348..375623
/locus_tag="DSY0322"
/note="TSCPD domain; Region: TSCPD; pfam12637"
/db_xref="CDD:221680"
gene 376074..377573
/locus_tag="DSY0323"
/db_xref="GeneID:3956978"
CDS 376074..377573
/locus_tag="DSY0323"
/note="similarity to COG1620 L-lactate permease(Evalue:
6E-38)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516556.1"
/db_xref="GI:89893069"
/db_xref="GeneID:3956978"
/translation="MEIILAAMPFLIILVLLFILRQSAVRAGISAYLLTLLIGLVIPR
FQIERQEILHATVKAVLTSAIVAYVLLFGIFLYHIMNETGLIKRIASLISGSTQDPVR
QVILLVVAFSPLVESVSGYGIAIIVVAPILVELGFSSFKAVLLSLLGLSAVPWGALAT
GTYIGANLAGIPFQRLGTDVAVLSIPTFFYFAVTAVYLAGGWQGVRAKWAELMLVAGS
LAFSVWLFNAYVSIELAGVFASLVALGVEFAFIYFTAKSTPEEAAFSLAARNQSKADI
LKTMSPYLILTGVLFISRLVPPIKAFAGSHAVFSLPAYSFSLPVLYSPGFSIFLTCLL
TILLFKIQKHVIKRAVQLSLKQWLPVTLSTIAFIGTSEIMAAAGMTTTLAQAAAAAFG
SAFVLCSPLIGGFGGFLTGSNVASNAMLINLQVEVAKQIGMPAELFASMQNTSSSHMT
MASPSRVLLGASVCNIRSEENRLLQKIFPMALGSLVLVLAAVFLLNLRG"
misc_feature 376074..377513
/locus_tag="DSY0323"
/note="L-lactate permease [Energy production and
conversion]; Region: LldP; COG1620"
/db_xref="CDD:224535"
misc_feature 376074..377501
/locus_tag="DSY0323"
/note="L-lactate permease; Region: Lactate_perm; cl00701"
/db_xref="CDD:242037"
gene 377794..379251
/locus_tag="DSY0324"
/db_xref="GeneID:3956979"
CDS 377794..379251
/locus_tag="DSY0324"
/note="similarity to COG0642 Signal transduction histidine
kinase(Evalue: 2E-33)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516557.1"
/db_xref="GI:89893070"
/db_xref="GeneID:3956979"
/translation="MGMERSMVVDNRHLSTKFTVLVTSVIIVAVVIYLAWSINMQQAA
TEDKVLAEARTLSIQMSAAWDYINDSQTAINYNSDGSYDFKGVYCSIAGKDIAQRFTR
QSEGYIIRYARENPRSGTDEPDVFERKALTLFATGESREQYGIEKYKGEMVFRYTSAI
EIRHNCLPCHGEPAGEKDETGFIKEGMKVGDIAGASSIIIPLDLYAKEARTRTLQTIG
FFLVLLFVVIAVVRFALRKWVTEPLTQANLELHDENEMKSNFLTIMSHELKTPLSSII
AFTDIWEKSSREKSEDEQRLVQEIKENSRTLLNMVNNTIDVARLEAGRFEITYDEVEL
VDIVSAVVSVAHPIAVKHNISLEKRISPDTPIIISDWEALRKILMNLVSNALKFTGAG
GKVDISVSYLSDRSRVVIQVADTGAGIPEKDHDQIFERFTQSTQPGDERINGSGLGLF
LVKTLTEKLGGEIEVDSVVERGSSFSVYVPIDSSK"
misc_feature 377893..378399
/locus_tag="DSY0324"
/note="Protein of unknown function (DUF3365); Region:
DUF3365; pfam11845"
/db_xref="CDD:221261"
misc_feature <378544..379236
/locus_tag="DSY0324"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature 378553..378750
/locus_tag="DSY0324"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(378571..378573,378583..378585,378595..378597,
378604..378606,378616..378618,378625..378627,
378679..378681,378691..378693,378700..378702,
378712..378714,378721..378723,378733..378735)
/locus_tag="DSY0324"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 378589..378591
/locus_tag="DSY0324"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 378913..379230
/locus_tag="DSY0324"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(378931..378933,378943..378945,378952..378954,
379027..379029,379033..379035,379039..379041,
379045..379050,379129..379140,379186..379188,
379192..379194,379207..379212,379216..379218)
/locus_tag="DSY0324"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 378943..378945
/locus_tag="DSY0324"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(379039..379041,379045..379047,379129..379131,
379135..379137)
/locus_tag="DSY0324"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 379749..381047
/locus_tag="DSY0325"
/db_xref="GeneID:3956980"
CDS 379749..381047
/locus_tag="DSY0325"
/note="similarity to COG3303 Formate-dependent nitrite
reductase, periplasmic cytochrome c552 subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516558.1"
/db_xref="GI:89893071"
/db_xref="GeneID:3956980"
/translation="MNYLGEKGRGSDHMNAKKLLLLFMAAALSVVVGCSPQSQSVTTE
TKPIDWKSMYPAQYYSSLGSADHLDDVETVPKTGGYGHGSQSKYMPISIEQKNGEINA
TCISCKSSKFNELYEKYGNEVFNATPSAKYAEIMTAEDWWSCGTCHSDMTDPAGSVGA
QIVTAELFGKELFDKLDPKTAACSQCHNNLSPWSDSRIVNGSDILNSGKSPYRYGWDP
DALIKATLEDAVPDASRYPNGKTMELSAAAHAKVDESTGTYLIANGNHADAEMFQGSL
HEQLGVSCTDCHMPTLEDRSGEPYTSHDASKSVLNSEASMNYCLSCHSSQGLETVKDM
YNYVRNAQAELAEKDAAVADKLDETYGYIEAAVKGGTVSNEVLDKARFNYAVAAYYKE
YVYGNRGATPGEKVAHNPKMSHKYLERAIALLDETIEMLR"
misc_feature <380052..380897
/locus_tag="DSY0325"
/note="Cytochrome c552; Region: Cytochrom_C552; pfam02335"
/db_xref="CDD:216980"
gene 381377..382072
/locus_tag="DSY0326"
/db_xref="GeneID:3956981"
CDS 381377..382072
/locus_tag="DSY0326"
/note="similarity to COG0745 Response regulators
consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain(Evalue: 2E-45)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516559.1"
/db_xref="GI:89893072"
/db_xref="GeneID:3956981"
/translation="MKIMLVDDEPSLCSALEIVITRAGYDFYCATDGIAALELFRSKK
PDLAILDLMVPWLNGFEICEEIRRTDSHIPILILSAKGDIVDKKMGFRAGADDYLTKP
FEEEELLLRIEALLRRRNKESGSLPINGLSQKVEIGELIIDPFRYEVTVRDRLVNLTP
KEYQIIALMANHPGKVFTREDLIDCIWGKEFETGSISIPVYIRRIREKIEQDPSEPTL
LKTVWRFGYKLGD"
misc_feature 381377..382063
/locus_tag="DSY0326"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature 381386..381685
/locus_tag="DSY0326"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(381395..381400,381527..381529,381551..381553,
381611..381613,381668..381670,381677..381682)
/locus_tag="DSY0326"
/note="active site"
/db_xref="CDD:238088"
misc_feature 381527..381529
/locus_tag="DSY0326"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(381536..381541,381545..381553)
/locus_tag="DSY0326"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 381677..381685
/locus_tag="DSY0326"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 381779..382063
/locus_tag="DSY0326"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(381851..381853,381908..381913,381965..381967,
381974..381976,381998..382003,382037..382039,
382052..382054)
/locus_tag="DSY0326"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene complement(382173..382529)
/locus_tag="DSY0327"
/db_xref="GeneID:3955812"
CDS complement(382173..382529)
/locus_tag="DSY0327"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516560.1"
/db_xref="GI:89893073"
/db_xref="GeneID:3955812"
/translation="MKRLKFRVWNKVSKKMHNPQAISFDIQNCNPFAVSIPAKSWDPA
EKYELLQWTGLRDESGTDVYEADLVLIDYEIYRVHWHESEAAFKLISLKGSLEKEAGL
LPTGKIIGNTYETENL"
misc_feature complement(382176..382517)
/locus_tag="DSY0327"
/note="YopX protein; Region: YopX; pfam09643"
/db_xref="CDD:220326"
gene complement(382635..383582)
/locus_tag="DSY0328"
/db_xref="GeneID:3955813"
CDS complement(382635..383582)
/locus_tag="DSY0328"
/note="similarity to COG0697 Permeases of the
drug/metabolite transporter (DMT) superfamily(Evalue:
1E-27)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516561.1"
/db_xref="GI:89893074"
/db_xref="GeneID:3955813"
/translation="MSCSIGQHHDLLISATTEMETPMNRSYLKYITSLILFGFNGIVA
SHISLSSYEIVFTRTLIGSLFLVIVFGFSKQKMRFLSNKSHFLYLSLSGVAMGASWMF
LYEAYTQIGVSIATLAYYCGPVIVMILSPLLFKERMTSAKLIGFLAVLTGMLCVSGQA
MSEEKTLFGLICGLLSAVMYAVMVIFNKKAVSITGLENSMWQLMASFATVFLFLGLKQ
DFSINIASGDWLPILILGIVNTGIGCYFYFSSIGLLPVQTVAICGYLEPLSALLFSAA
LLGERLSLVQILGALLILGGAAFGELYRRKLPANSSLTT"
misc_feature complement(383112..383480)
/locus_tag="DSY0328"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
misc_feature complement(382725..383471)
/locus_tag="DSY0328"
/note="Carboxylate/Amino Acid/Amine Transporter; Region:
2A78; TIGR00950"
/db_xref="CDD:233205"
misc_feature complement(382725..383051)
/locus_tag="DSY0328"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
gene complement(383635..384849)
/locus_tag="DSY0329"
/db_xref="GeneID:3955814"
CDS complement(383635..384849)
/locus_tag="DSY0329"
/note="similarity to COG2015 Alkyl sulfatase and related
hydrolases(Evalue: 5E-56)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516562.1"
/db_xref="GI:89893075"
/db_xref="GeneID:3955814"
/translation="MAEIIPGSVYHVIGYGHSNAGFIIAENSVILIDTLDSDERAQTL
KSLIARYTNKPVKTIIYTHGHPDHRGGSGAFMDSNPEIIAFAPCKPVLGRMNALQDVL
NQRGIRQFGYQLNNEEALTQGLGIREGKAQGEGQYAIMPPTTVYQEDSVLRSLDGIEL
ELAAAPGEADDQILIWLPAHKVLFCGDNYYGCWPNLYAIRGSQYRDVSAWVDTLNKLI
AYRAHYLLPGHTRPIIGETAVQETLTNFRDAIDYVLTETLKGMNQGLTMDEVAEAVKL
PEKWAKLPYLGEFYGTVSWSVRGIYAGYVGWFDGNPTHLNPLPPAVQAQKTVALMGGA
ETVLSAIRQALSEQDYQWSVVLADLLLAMDRSHKQAKEYKAQGLVELGHRETSANGRH
YYLAYAKELLAE"
misc_feature complement(384163..384795)
/locus_tag="DSY0329"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:214854"
gene 385197..386150
/locus_tag="DSY0330"
/db_xref="GeneID:3955815"
CDS 385197..386150
/locus_tag="DSY0330"
/note="similarity to COG0472 UDP-N-acetylmuramyl
pentapeptide phosphotransferase/UDP-N-
acetylglucosamine-1-phosphate transferase(Evalue: 3E-54)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516563.1"
/db_xref="GI:89893076"
/db_xref="GeneID:3955815"
/translation="MMEFIIPFFFVFFIVFMSIPLLEKLAVKWNFVDKPTERKKHKHP
IPLLGGVGIFLGFMIGYLVFVRPINYQSLAIIIASVLVLGIGLIDDWYKTLGKEFPAL
PRLMVHILAAWMVFSAGIVFYGFTNPFTQQYIVLPYIIQLILSIMWIVGVTTVINWSD
GIDGLAGILSSIAGATLYVAALAKGQSDSALLSALLVGAALGFLRYNRHPARIFMGDS
GANFLGFILAIVALSGAFKQATLVSLSIPVLALGVPIFDNIIVVLKRFSRGESIYKAD
ATQIHHRLISSGLNPKQTVAFISLMSVCFSLLSIIILLLNI"
misc_feature 385251..386105
/locus_tag="DSY0330"
/note="phospho-N-acetylmuramoyl-pentapeptide-transferase;
Region: mraY; TIGR00445"
/db_xref="CDD:161884"
misc_feature 385308..386063
/locus_tag="DSY0330"
/note="This subfamily contains Escherichia coli WecA,
Bacillus subtilis TagO and related proteins. WecA is an
UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate
(Und-P) GlcNAc-1-phosphate transferase that catalyzes the
formation of a phosphodiester bond...; Region:
GT_WecA_like; cd06853"
/db_xref="CDD:133463"
misc_feature 385461..385466
/locus_tag="DSY0330"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133463"
misc_feature 385836..385847
/locus_tag="DSY0330"
/note="putative catalytic motif [active]"
/db_xref="CDD:133463"
misc_feature order(385989..385991,386031..386042)
/locus_tag="DSY0330"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133463"
gene complement(386265..387098)
/locus_tag="DSY0331"
/db_xref="GeneID:3955816"
CDS complement(386265..387098)
/locus_tag="DSY0331"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516564.1"
/db_xref="GI:89893077"
/db_xref="GeneID:3955816"
/translation="MDSPIGATSPTHSSTLSQEEALRVLYQELLAKTEHTVAFLKEAR
VGNHTIYAFQHMINGRAPTIDFVHSKTGKVYYDSVELLLDIFINSEDKEPYKAANYIN
KDIYYLEMKSVNDPEPTTWSTYVFNEDAYTSAEAAKKAVVKVYAENHPTLSLLGKPLA
EVEKITKVESIKAPVETKDEETTEVTQIALDNILILFDKDSISSEIFLEGQQEILGVK
IGEPFNEISDKLGMPDSFGQDPEFENIYTMRYLFDGFQIEFYGENKDANTVSALIKKR
I"
gene 387752..389053
/locus_tag="DSY0332"
/db_xref="GeneID:3955817"
CDS 387752..389053
/locus_tag="DSY0332"
/note="similarity to COG2223 Nitrate/nitrite
transporter(Evalue: 1E-146)"
/codon_start=1
/transl_table=11
/product="nitrate/nitrite transporter"
/protein_id="YP_516565.1"
/db_xref="GI:89893078"
/db_xref="GeneID:3955817"
/translation="MQKIERWDPEDQEFWETKGKKVANRNLWISIPALLLAFAVWQLW
SVVAVNLNSAGFQFTTDQLFTLAALPGLTGATMRFFYSFTVPVFGGRNWTVVSTASLL
IPTIGIGLAVQNPATSFTTMAILAAFCGLGAGNFASSMANISFFFPKKAKGTALGLNA
GLGNLGVSAVQFLAPLVITVGIFGSIGGAPQMMVQGGLQQQVFLQNALFIWVIPIVLT
VIAAFWGMNNLETAKASVREQMIVLKRKHTWLMSWLYTMCFGSFIGYSAAFPLLIKTQ
FPDVNGLQLAFLGPLVGALARPLGGWLGDKFGGARITTLDVLVMIASALGAIFFIGMN
SFVGFFTMFMLLFITAGIANGSTFRMIPVIFPPKEASAVLGITSAIAAYAAYFIPKAF
SWSLQATASPNGAMLAFVAFYVVSLGINWYYYDRRNAEIKC"
misc_feature 387770..389047
/locus_tag="DSY0332"
/note="nitrate/nitrite transport protein NarU;
Provisional; Region: PRK15034"
/db_xref="CDD:184994"
misc_feature 387830..389023
/locus_tag="DSY0332"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(387872..387874,387881..387889,387893..387898,
387950..387952,387959..387964,387971..387973,
387983..387988,387992..387997,388148..388153,
388160..388162,388169..388174,388181..388183,
388280..388285,388292..388297,388313..388315,
388526..388528,388535..388540,388547..388552,
388559..388561,388595..388597,388607..388609,
388619..388621,388628..388630,388640..388642,
388790..388792,388799..388804,388811..388813,
388823..388828,388835..388837,388868..388873,
388880..388885,388892..388897,388904..388906)
/locus_tag="DSY0332"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 389089..390309
/locus_tag="DSY0333"
/db_xref="GeneID:3955818"
CDS 389089..390309
/locus_tag="DSY0333"
/note="similarity to COG2223 Nitrate/nitrite
transporter(Evalue: 1E-107)"
/codon_start=1
/transl_table=11
/product="nitrate/nitrite transporter"
/protein_id="YP_516566.1"
/db_xref="GI:89893079"
/db_xref="GeneID:3955818"
/translation="MTSGKGFLKSGHLGTLIASFFYFDISFMIWVLLGVTSTFVVGEF
QMTDAQKGLMVGLPVLGGAFLRIPMGLLADRFGGKKIGIIGMLVTMVPLLWGYLFGNG
IGEIYALGLLLGVSGASFAVALPLASRWYPPEHQGLAMGIAGAGNSGTVLATLFAPRL
AEQVGWHGVFGLALIPLTVALAVFIFLAKDNPNAPKPQGVSAYLQIVKHKETWLYSFF
YSLTFGGFVGMTSYLSLFFVDQYQLSKVTAGDFVTLIVFAGSFIRPIGGYLGDRLGGM
KMLIGLYLVLSMLLLLAGTLPSSAYVALGVLFLTMLFFGIGNGALFQVIPTEFPKEVG
IMTGFVGAAGGVGGFILPNILGNVKGLTGSYSYGFWWLAATFLAAALLVFVLRKSRSK
LSSLPEPGLAKNSV"
misc_feature 389107..390198
/locus_tag="DSY0333"
/note="Nitrate/nitrite transporter [Inorganic ion
transport and metabolism]; Region: NarK; COG2223"
/db_xref="CDD:225133"
misc_feature 389134..390087
/locus_tag="DSY0333"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(389176..389178,389185..389193,389197..389202,
389251..389253,389260..389265,389272..389274,
389284..389289,389293..389298,389434..389439,
389446..389451,389458..389463,389470..389472,
389506..389511,389518..389523,389536..389538,
389755..389757,389764..389769,389776..389781,
389788..389790,389830..389832,389842..389844,
389854..389856,389863..389865,389875..389877,
390019..390021,390028..390033,390040..390042,
390052..390057,390064..390066)
/locus_tag="DSY0333"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 390328..393999
/gene="narG"
/locus_tag="DSY0334"
/db_xref="GeneID:3958213"
CDS 390328..393999
/gene="narG"
/locus_tag="DSY0334"
/EC_number="1.7.99.4"
/note="similarity to COG0243 Anaerobic dehydrogenases,
typically selenocysteine-containing(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="nitrate reductase subunit alpha"
/protein_id="YP_516567.1"
/db_xref="GI:89893080"
/db_xref="GeneID:3958213"
/translation="MKLWKKMRFFQQATEKYADGWSSSAVKDRDWEDLYRQRWQHDKV
VRTTHGVNCTGSCSWKVFVKNGLITWEHQQRDYPGTDPDMPEFEPRGCPRGASYSWYV
YSPLRVRFPYIRRILLELWREALELHENPLEAWQSIVEDPEKAGQYKKARGKGGFLRC
TWSEVYRLIAAQMLYTIKTYGPDRIAGFTPIPAMSMVSYAAGARFISLVGGPMLSFYD
WYADLPPASPQIWGEQTDVPESSDWYNSGYLIMWGSNVPLTRTPDAHFMTEVRYKGTK
VVAVSPDYAENVKFADSWMAVKPGSDGALAQAMTHVILKEFYVDKSSPYFVEYAKRFT
DLPFLVTLNQWGDCYVTGRFLLASDLGWDIVNPEWQTVVCNEVTGEMTVPNGSIGTRW
GDHLKWNLKQEDVYGQSLEPLLSLAEQADERVMVAFPYFDNRSKGVKKRELPVRRIRK
GDKEFYVTTVYDLMLAHYGVSRKGLTRGYPQDYDDQESYTPAWQEQITGVPREQVIQI
AREFAENAEQTQGRSMIIMGAGANHWFNSDTIYRAILNLVLLTGCQGVNGGGWAHYVG
QEKCRPIEGWNAIAFARDWSAPPRLQNATSFYYFATDQWRYEELPMSQLTAATVGKPR
YEHPADYNVLAAQLGWLPSYPQFNVNNLQIADMARAAGAVSPQEVADYVVSSLQEKTI
RFAAENPDDPRNFPRTLWVWRSNLLSSSGKGHEYFMKHLLGASHGLLAEENISFKPEK
MVWQEAAEGKLDLLINLEFRMTGTALHSDILLPAATWYEKHDLSSTDMHPFVHPFNPA
IDPPWEAKTDWNIFRGMAEVFSDMAAKYFPGVHQDLVAVPLMHDSVDEIAQPFGRVRE
WSKGEVAPVPGKTMPKLVPVERDYGLIHEKYSSLGPLLEKNPVGAHGISFSVADQYHQ
LKAINGTVEAGLAAGRPKLETARQAAEAMLTLSSATNGKVAMKAWEAEEGKTGLLLKD
IAEERAGERLTFDGITAQPRQVIPTPVFTGSNKGNRRYSPFTTNIERLVAFRTLTGRQ
QFYLDHEVILEYGEGLPIFKPTLQLLVLADRDQQPSRKEKEIVLRYLTPHGKWNIHST
YQDNIHMLTLFRGGPHIWLNHQDAQEADIGDNDWVELYNRNGVVVARAVLTHRLPRGT
TFMYHAQDKHINMPGSTITGERGGTHNSPTRIHIKPTQCIGGYAQLSYGFNYYGPIGN
QRDVYVSIRKLNEVNWLEN"
misc_feature 390331..393987
/gene="narG"
/locus_tag="DSY0334"
/note="Nitrate reductase alpha subunit [Energy production
and conversion]; Region: NarG; COG5013"
/db_xref="CDD:227346"
misc_feature 390451..>391347
/gene="narG"
/locus_tag="DSY0334"
/note="Respiratory nitrate reductase A (NarGHI), alpha
chain (NarG) and related proteins. Under anaerobic
conditions in the presence of nitrate, E. coli synthesizes
the cytoplasmic membrane-bound quinol-nitrate
oxidoreductase (NarGHI), which reduces nitrate to...;
Region: MopB_Nitrate-R-NarG-like; cd02750"
/db_xref="CDD:239151"
misc_feature order(390472..390474,390484..390486,390496..390498,
390502..390504,390601..390603)
/gene="narG"
/locus_tag="DSY0334"
/note="[4Fe-4S] binding site [ion binding]; other site"
/db_xref="CDD:239151"
misc_feature <391792..>392034
/gene="narG"
/locus_tag="DSY0334"
/note="Molybdopterin-Binding (MopB) domain of the MopB
superfamily of proteins, a large, diverse, heterogeneous
superfamily of enzymes that, in general, bind
molybdopterin as a cofactor. The MopB domain is found in a
wide variety of molybdenum- and...; Region:
Molybdopterin-Binding; cl09928"
/db_xref="CDD:245203"
misc_feature <392413..392775
/gene="narG"
/locus_tag="DSY0334"
/note="Molybdopterin-Binding (MopB) domain of the MopB
superfamily of proteins, a large, diverse, heterogeneous
superfamily of enzymes that, in general, bind
molybdopterin as a cofactor. The MopB domain is found in a
wide variety of molybdenum- and...; Region:
Molybdopterin-Binding; cl09928"
/db_xref="CDD:245203"
misc_feature <393376..393480
/gene="narG"
/locus_tag="DSY0334"
/note="Molybdopterin-Binding (MopB) domain of the MopB
superfamily of proteins, a large, diverse, heterogeneous
superfamily of enzymes that, in general, bind
molybdopterin as a cofactor. The MopB domain is found in a
wide variety of molybdenum- and...; Region:
Molybdopterin-Binding; cl09928"
/db_xref="CDD:245203"
misc_feature 393544..393966
/gene="narG"
/locus_tag="DSY0334"
/note="Respiratory nitrate reductase A (NarGHI), alpha
chain (NarG) and related proteins. Under anaerobic
conditions in the presence of nitrate, E. coli synthesizes
the cytoplasmic membrane-bound quinol-nitrate
oxidoreductase (NarGHI), which reduces nitrate to...;
Region: MopB_CT_Nitrate-R-NarG-like; cd02776"
/db_xref="CDD:239177"
misc_feature order(393559..393570,393577..393591,393778..393780,
393844..393846,393940..393945)
/gene="narG"
/locus_tag="DSY0334"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:239177"
gene 393989..395440
/gene="narH"
/locus_tag="DSY0335"
/db_xref="GeneID:3958214"
CDS 393989..395440
/gene="narH"
/locus_tag="DSY0335"
/EC_number="1.7.99.4"
/note="similarity to COG1140 Nitrate reductase beta
chain(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="nitrate reductase subunit beta"
/protein_id="YP_516568.1"
/db_xref="GI:89893081"
/db_xref="GeneID:3958214"
/translation="MKIKAQIAMVINLDKCIGCHTCSVTCKNTWTNRSGAEYMWFNNV
ETKPGAGYPDQWEDQQRYKGGWHLRKGQLTLRSGFRWQGLSLSRIFYNPNSPTIDDYY
EPWTYDYQKLLKSPVRRHMPTARPQSLLTGEYIEKLRKGPNWDDDLAGGPQAGGRDPN
LRDLLGEEVRLEFEKAFMLYLPRLCEHCLNPGCVASCPSGAIYKRDEDGIVLVDQEKC
RGWRYCTSGCPYKKVYYNWKTYKAEKCTFCYPRVEEGVATVCSETCPGRLRYMGVLLY
DADRVPRAAAQPDEQALYQAQLELFLDPHDPAVIAQARRDGIQEDWLAAAQISPVYKL
AVQYGLALPLHPEFRTLPMVWYIPPLSPMVSVLESRTSGSVTTGFFPTLEQMRAPVQY
LANFLTGGNPQPVERALRRLLGMRHFMRSLETGQENQEQLLETIGLSEQTVRHMYRLL
AVAKYEDRIVIPLAHREESRKAHQEQGKVGYAL"
misc_feature 393989..395431
/gene="narH"
/locus_tag="DSY0335"
/note="Nitrate reductase beta subunit [Energy production
and conversion]; Region: NarY; COG1140"
/db_xref="CDD:224063"
gene 395454..395987
/gene="narJ"
/locus_tag="DSY0336"
/db_xref="GeneID:3958216"
CDS 395454..395987
/gene="narJ"
/locus_tag="DSY0336"
/EC_number="1.7.99.4"
/note="similarity to COG2180 Nitrate reductase delta
subunit"
/codon_start=1
/transl_table=11
/product="nitrate reductase subunit delta"
/protein_id="YP_516569.1"
/db_xref="GI:89893082"
/db_xref="GeneID:3958216"
/translation="MNKKDVFCLLAYLLQYPQADWIDPEELRREAENWEEGDTRSRLN
LFVDYLQSAPLNVLQENFVETFDFSKKTTLYLLYPQYGEEPKRVEVLQELIQEYQKAG
LLIGQELPDYLPLVLEALSNVAIDRGRIILKPVYAGLQYLHDQLVKMNSPYALLLEVC
LSSIHSLFGEIGGVTAT"
misc_feature 395469..395936
/gene="narJ"
/locus_tag="DSY0336"
/note="Nitrate reductase delta subunit; Region:
Nitrate_red_del; cl00958"
/db_xref="CDD:242221"
gene 395984..396700
/gene="narI"
/locus_tag="DSY0337"
/db_xref="GeneID:3958215"
CDS 395984..396700
/gene="narI"
/locus_tag="DSY0337"
/EC_number="1.7.99.4"
/note="similarity to COG2181 Nitrate reductase gamma
subunit(Evalue: 5E-59)"
/codon_start=1
/transl_table=11
/product="nitrate reductase subunit gamma"
/protein_id="YP_516570.1"
/db_xref="GI:89893083"
/db_xref="GeneID:3958215"
/translation="MMNQLLWVIFPYTMLTAFVVGHIYRYRSGQIGWTSRSSQLLEKK
ALKWGSTLFHFGVLAALCGHVGMLVPKEVMEAIGINEHMYHMAASWGGSTAGVITLIG
TIILLLRRLCVKRIRRNSSMGDLFVIVLIAGIVFTGLWNSLVINSFGAGHDYRETVGP
WLRGLITLQPRAELMGGVPLFFKLHILMAFAALGLWPFTRLVHVWSFPLTYLKRSRIL
YRKWNKAGGTEQERQNTPAA"
misc_feature 395984..396649
/gene="narI"
/locus_tag="DSY0337"
/note="Nitrate reductase gamma subunit; Region:
Nitrate_red_gam; pfam02665"
/db_xref="CDD:145687"
gene 396797..397255
/locus_tag="DSY0338"
/db_xref="GeneID:3955819"
CDS 396797..397255
/locus_tag="DSY0338"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516571.1"
/db_xref="GI:89893084"
/db_xref="GeneID:3955819"
/translation="MGKQEQEIKIFLEKVRADIGSDFVGLACHDFDSHHIRWQYVAGN
LNNLYRKITLWPGRGIAGKVVASGRPMALEDFALKSGDDAREYPILLAEDLRSVMAAP
IIECDHVKGVLLIGFRTPHRFTEETLAQLVFFAGQCRELLAEPELNLPEV"
misc_feature 396809..397210
/locus_tag="DSY0338"
/note="FOG: GAF domain [Signal transduction mechanisms];
Region: FhlA; COG2203"
/db_xref="CDD:225113"
misc_feature 396809..397210
/locus_tag="DSY0338"
/note="GAF domain; Region: GAF; pfam01590"
/db_xref="CDD:216590"
gene 397212..398330
/locus_tag="DSY0339"
/db_xref="GeneID:3955820"
CDS 397212..398330
/locus_tag="DSY0339"
/note="similarity to COG0642 Signal transduction histidine
kinase(Evalue: 2E-32)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516572.1"
/db_xref="GI:89893085"
/db_xref="GeneID:3955820"
/translation="MSCWRNRSLIYLRSEGGLLLRNQGRGVITLYWKCQKEAGSNELL
NQITEQIPNPVLVSNEAGWVIGANGAVMRLTGWSFQELTTGRMTVFRHNSPIDDWYNL
GGDEGHGLEVCLEKQDGMRLKLPIESVFTYRPPGQAVVAILREFSPQQEEYVQNLLTK
YIIRAQEDERKRVSRELHDELGQNIYSVLVGLQVLEKAMPEAVQIQNLQQMVARSLAM
LKNIAVELRPSTLDDLGLAAAIRSFLKHFEQTYGIEGQLTVSGEQHRYEPEIETALYR
ICQEAMLNVAKYAKVTEVQVFLQNYPDQLNLIVEDQGVGFDVGQLEIQGTGLGLYGMK
ERAQLVGGKVEIVSQVNLGTRVQATIPLTEKGGIWHAH"
misc_feature 397335..397643
/locus_tag="DSY0339"
/note="PAS fold; Region: PAS; pfam00989"
/db_xref="CDD:216228"
misc_feature 397335..>397457
/locus_tag="DSY0339"
/note="PAS domain; Region: PAS; smart00091"
/db_xref="CDD:214512"
misc_feature 397716..397892
/locus_tag="DSY0339"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:219540"
misc_feature 397863..398279
/locus_tag="DSY0339"
/note="Anti-sigma regulatory factor (Ser/Thr protein
kinase) [Signal transduction mechanisms]; Region: RsbW;
COG2172"
/db_xref="CDD:225083"
misc_feature 398031..398291
/locus_tag="DSY0339"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(398049..398051,398061..398063,398070..398072,
398136..398138,398142..398144,398148..398150,
398154..398159,398190..398201,398247..398249,
398253..398255,398268..398273,398277..398279)
/locus_tag="DSY0339"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 398061..398063
/locus_tag="DSY0339"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(398148..398150,398154..398156,398190..398192,
398196..398198)
/locus_tag="DSY0339"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 398266..398970
/locus_tag="DSY0340"
/db_xref="GeneID:3955821"
CDS 398266..398970
/locus_tag="DSY0340"
/note="similarity to COG2197 Response regulator containing
a CheY-like receiver domain and an HTH DNA-binding
domain(Evalue: 2E-41)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516573.1"
/db_xref="GI:89893086"
/db_xref="GeneID:3955821"
/translation="MEHVSRPQSPLPKKEGFGMPIRILIGDDHAIVRSGLTMLINSHD
DMEVVGTAADGRETFELAMKLKPDVILLDLSMPPGENGLSATLRIKDAAPEIQILILT
MHDDEEYIFKILQAGASGYILKSAYDNDLINAIRTIYHGNAYLGPSITKTLIHEFAQR
SLHGNESGTDLTVREQNFLSLMAMGYSNKEIAEELSVSVKTVESYRSKIKDKLNLKTR
HELVRYALKKGLMDLE"
misc_feature 398326..398964
/locus_tag="DSY0340"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:225107"
misc_feature 398335..398679
/locus_tag="DSY0340"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(398344..398349,398482..398484,398509..398511,
398569..398571,398626..398628,398635..398640)
/locus_tag="DSY0340"
/note="active site"
/db_xref="CDD:238088"
misc_feature 398482..398484
/locus_tag="DSY0340"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(398491..398496,398503..398511)
/locus_tag="DSY0340"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 398635..398643
/locus_tag="DSY0340"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 398776..398946
/locus_tag="DSY0340"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(398779..398787,398824..398832,398854..398859,
398863..398868,398872..398886,398917..398919)
/locus_tag="DSY0340"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(398812..398814,398818..398820,398824..398826,
398917..398925,398932..398934,398941..398946)
/locus_tag="DSY0340"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 399249..399674
/locus_tag="DSY0341"
/db_xref="GeneID:3955822"
CDS 399249..399674
/locus_tag="DSY0341"
/note="similarity to COG1725 Predicted transcriptional
regulators"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516574.1"
/db_xref="GI:89893087"
/db_xref="GeneID:3955822"
/translation="MRAIILNSDSIKPIYIQIAEWLEAEILKGNLTEDERIYSQYQLA
EIFTINPATAAKGLNLLADEEIVYKKRGLGMFVSPHAKSYILQKRKNQILGQMIRDLV
DEAVRLGVRKTELLEMIELAHQEADDRDREAGGEEEEKQ"
misc_feature 399258..399608
/locus_tag="DSY0341"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1725"
/db_xref="CDD:224639"
misc_feature 399285..399482
/locus_tag="DSY0341"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(399285..399287,399291..399293,399360..399362,
399366..399371,399393..399407,399411..399416,
399423..399425,399453..399458,399462..399473)
/locus_tag="DSY0341"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
gene 399671..400585
/locus_tag="DSY0342"
/db_xref="GeneID:3955823"
CDS 399671..400585
/locus_tag="DSY0342"
/note="similarity to COG1131 ABC-type multidrug transport
system, ATPase component(Evalue: 7E-40)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516575.1"
/db_xref="GI:89893088"
/db_xref="GeneID:3955823"
/translation="MSVVVGYELYKRYGKVQALGDVSFAIEENTITGLIGRNGTGKTT
LLKMMAGHLKPTQGKLRVFAQNPFDNLDVAGKVFLVDDTMAFPDSFTLQDILREVAVF
YPNWNSQIAQGLLEYFLLNPQQRHSNLSKGSKSTFNAILGIAARCPLTLLDEPTTGMD
SAVRKDFYRVLLKDYLEQPRTIILSSHLLGELEDILEDILLLNQGGLLMHKPILDLKQ
YALGFRGSAQALQESLLNRLSEEAVLHREEFVKGSLYLVIKTEELPEDFENIRSSGVE
ILPVALDDLCNILTAPRKGGIDDVYKRG"
misc_feature 399671..400480
/locus_tag="DSY0342"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:224054"
misc_feature 399695..400231
/locus_tag="DSY0342"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 399776..399799
/locus_tag="DSY0342"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(399785..399790,399794..399802,399914..399916,
400127..400132,400229..400231)
/locus_tag="DSY0342"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 399905..399916
/locus_tag="DSY0342"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 400055..400084
/locus_tag="DSY0342"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 400115..400132
/locus_tag="DSY0342"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 400139..400150
/locus_tag="DSY0342"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 400217..400231
/locus_tag="DSY0342"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 400602..401327
/locus_tag="DSY0343"
/db_xref="GeneID:3955824"
CDS 400602..401327
/locus_tag="DSY0343"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516576.1"
/db_xref="GI:89893089"
/db_xref="GeneID:3955824"
/translation="MSQMILKQYGYKLKGHSGLIYSLIIVQLLAILLSLGSSSGMSSN
SDLISIAVRTYTGDILLICSLLWLMVVASLLGSQPYRSMEFSVVNNRLVSHASNILLL
VTYAVYAGVTSTLAVIIHRLILSATLKEGEFLFGGLQIIPQDLLLGIFVATLYFILVA
ATVYLIQSFSLHSKGLGIILWICFFAFGFGTVRIFDFNLGKVLEFYAAETSLGVFVLK
VFCTAVLFFGSSMLITKGMEAKR"
gene 401324..402082
/locus_tag="DSY0344"
/db_xref="GeneID:3955825"
CDS 401324..402082
/locus_tag="DSY0344"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516577.1"
/db_xref="GI:89893090"
/db_xref="GeneID:3955825"
/translation="MTKLLFTNIIFLFLIIGLIYLLAKFVRPRLRRVYRWKTNLLIAG
AYLALLVVSIPLALFLDQGEFFQSRNAQAQGMLAEAPADWSEDGGRRYHIFENEPLER
QAGLVENSRQTYAADTPQLRIQTAGSTGYGRIFLERKKNADGLIEVSTYVAPHYARTD
TFKPIDFTKLVAPPQITWEAGVLKIGDPVKQSFEFKMYSDSFPVWQFKEEKQSNYIGG
GSMTFGEKGILVRIPPDMEVVDGDSGEFTWVSNQ"
gene complement(402145..402387)
/locus_tag="DSY0345"
/db_xref="GeneID:3955826"
CDS complement(402145..402387)
/locus_tag="DSY0345"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516578.1"
/db_xref="GI:89893091"
/db_xref="GeneID:3955826"
/translation="MKKDATRIKLSKEQKEEMASAIQRYFLQERDEEIGALASSLMLD
FIIKELAPEFYNQGVSDSYQFMNERTEDLFSLQIYR"
misc_feature complement(402169..402366)
/locus_tag="DSY0345"
/note="Uncharacterized conserved protein (DUF2164);
Region: DUF2164; pfam09932"
/db_xref="CDD:204345"
gene complement(402384..403292)
/locus_tag="DSY0346"
/db_xref="GeneID:3955827"
CDS complement(402384..403292)
/locus_tag="DSY0346"
/note="similarity to COG0500 SAM-dependent
methyltransferases(Evalue: 1E-62)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516579.1"
/db_xref="GI:89893092"
/db_xref="GeneID:3955827"
/translation="MPKSVLLSDGLADKYAGLLKCPICHNSMALINKKSLICRDKHCF
DLAKQGYVNLLSHGIKTKYNKQLFEARKLLAQSGFFEPLNQLLCTLIGNLMNNSEGKA
QGPSLNIVDAGCGEGSHLATIQQKLLQSRGIQPLGVGMDLAKEGIQMAARDYGSILWC
VADLAQCPFGDQQFNVLLNILSPANYSEFARILTDDGLIIKVVPEKDYLKELREILYK
ETAKQDYSNAKTRELFENHLQLCKLVPLRYSVTLDQPLIGNLVQMTPLTWGAEETRIA
KVLKLESLEITIDLTIMVGQKREERS"
misc_feature complement(402402..403232)
/locus_tag="DSY0346"
/note="23S rRNA methyltransferase A; Provisional; Region:
rrmA; PRK11088"
/db_xref="CDD:236841"
misc_feature complement(402702..402968)
/locus_tag="DSY0346"
/note="Methyltransferase domain; Region: Methyltransf_25;
pfam13649"
/db_xref="CDD:222287"
gene 403398..403721
/locus_tag="DSY0347"
/db_xref="GeneID:3955828"
CDS 403398..403721
/locus_tag="DSY0347"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516580.1"
/db_xref="GI:89893093"
/db_xref="GeneID:3955828"
/translation="MGSRGGRRMKMRKSMVFSGLALVLMLFILTGCIPGDGSYDFDKP
AGFLSGVWHGWIAPLSLIMGIFSETVRVYEVFNTGWWYDFGFYIAVISGFGGLSLSRK
KKKDK"
misc_feature 403446..>403598
/locus_tag="DSY0347"
/note="OxaA-like protein precursor; Provisional; Region:
PRK02463"
/db_xref="CDD:235040"
gene 403886..404185
/locus_tag="DSY0348"
/db_xref="GeneID:3955829"
CDS 403886..404185
/locus_tag="DSY0348"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516581.1"
/db_xref="GI:89893094"
/db_xref="GeneID:3955829"
/translation="MYQEKVITCKDCGAEFVFSVSEQEFYAEKGFTNEPGRCPSCRAA
RKQQSRGGNGGYQRQERQMYPAVCASCGVDTMVPFQPSGDKPVYCRDCFTPRSRY"
misc_feature 403892..404038
/locus_tag="DSY0348"
/note="Probable zinc-binding domain; Region: zf-trcl;
pfam13451"
/db_xref="CDD:205629"
misc_feature 404066..404173
/locus_tag="DSY0348"
/note="CxxC-x17-CxxC domain; Region: cxxc_cxxc_Mbark;
TIGR04272"
/db_xref="CDD:211995"
gene 404366..405457
/locus_tag="DSY0349"
/db_xref="GeneID:3955830"
CDS 404366..405457
/locus_tag="DSY0349"
/note="similarity to COG1680 Beta-lactamase class C and
other penicillin binding proteins(Evalue: 1E-27)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516582.1"
/db_xref="GI:89893095"
/db_xref="GeneID:3955830"
/translation="MKSKILLLMAMLIGSVYLTGCGRIAEPEQGTVMEEREQQNPEQR
DVLVWEWQYGAPEDHGLNGDTLESLHATYDTTQILASVIFKDGHIVDEYYKDGYDKAS
LFLLHSCSKSVTSALIGIAIDKGYIESVDVPIAEYFPQILESDDNRLKQITLGHLLTN
TSGFDSSDTEYWREWRNSENWVDFVLNRPLTSTPGTVFSYSTGNTHLLAAILQKATGK
TAYEFGKEFLFDLIGMDSVQCNMDSQGISDGGNGFSMTVYDMVKFGLLYYHGGLWGEQ
QIISREWVEESTRLQFKRSSGTADYGYQWWVRTFGEEQYDTFFAQGHGGQYIFVIPEL
ELIIAFTSNHTGSSDMYWQFVNDIVAASD"
misc_feature 404609..405406
/locus_tag="DSY0349"
/note="Beta-lactamase; Region: Beta-lactamase; pfam00144"
/db_xref="CDD:215746"
misc_feature 404609..405403
/locus_tag="DSY0349"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:224594"
gene 405677..407308
/locus_tag="DSY0350"
/db_xref="GeneID:3955831"
CDS 405677..407308
/locus_tag="DSY0350"
/note="similarity to COG0840 Methyl-accepting chemotaxis
protein(Evalue: 3E-53)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516583.1"
/db_xref="GI:89893096"
/db_xref="GeneID:3955831"
/translation="MELKGWGCRVTIRSTLRAIVVLLLLFSVTSTVVVFYQLEKMQQD
GAVINTAGVVRGATQRLIKLEMAKQPNDELIQKLDGIIEGLIQGDESLGLPKASDEVF
IQEMNKVKSEWQSLKGTIESAQRSGDMTALVQESESYFATTNAAVAAAEGFSAAKVKA
LKVIQSVLMVFNLILLIAIWFMSSNRISQPIQKLIGIVEHLNVSENIPEHFMNRKDEV
GGLSRAFQGVIHNIRDLVAGLALSSEKLADSAAFLGNISQESSTAAMEIAKTIEGIAL
GASDQANEIQNGVAQMDVLGHLVAEDQKKVEDLRQATDRVEQLKDEGTMILADLIKIT
DQNGKSAQEVQETILETNESAKNIVEASLKIKEIAAQTNLLALNAAIEAARAGEQGRG
FAVVAEEIRKLAEESNRFTTEIENITKVLTLKTREAVVKMGEMDSVVKIQSESVSATE
TKFAGIAEAIDRIQGYTEIISNSTDGIADKNQSIMNMIQSLSAISEESAASTQEVSAS
VQEQTAAMDQIAGASQELAALAEELESSMQQFTQR"
misc_feature 405782..406087
/locus_tag="DSY0350"
/note="Type IV pili methyl-accepting chemotaxis transducer
N-term; Region: PilJ; pfam13675"
/db_xref="CDD:222310"
misc_feature 406175..406378
/locus_tag="DSY0350"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:242275"
misc_feature 406472..407236
/locus_tag="DSY0350"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:214599"
misc_feature 406559..407143
/locus_tag="DSY0350"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(406577..406582,406589..406594,406601..406603,
406610..406615,406619..406624,406631..406633,
406640..406645,406652..406654,406661..406666,
406673..406678,406685..406687,406694..406699,
406703..406708,406718..406720,406724..406729,
406736..406738,406745..406750,406757..406762,
406769..406771,406778..406780,406787..406792,
406799..406801,406811..406813,406820..406822,
406841..406843,406853..406855,406862..406864,
406871..406876,406883..406885,406892..406897,
406904..406909,406913..406918,406925..406930,
406967..406972,406979..406981,406988..406993,
407000..407002,407009..407014,407018..407023,
407030..407035,407042..407044,407051..407056,
407063..407065,407072..407077,407081..407086,
407093..407098,407102..407107,407114..407116,
407123..407128,407135..407137)
/locus_tag="DSY0350"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 406787..406888
/locus_tag="DSY0350"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 407438..408439
/locus_tag="DSY0351"
/db_xref="GeneID:3953616"
CDS 407438..408439
/locus_tag="DSY0351"
/note="similarity to COG3458 Acetyl esterase
(deacetylase)(Evalue: 7E-46)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516584.1"
/db_xref="GI:89893097"
/db_xref="GeneID:3953616"
/translation="MTIIQDAIQQLETIPYRGVPPEDFKEFWLESLRRDAQTKARLEL
EAIAYPLSKVEVFSATVLSGDRTKLKGYYMRPRAIDLQEALPGLVRFHGYSGNRGQLS
ELLLWALQGYAVLALDVRGQCGETPDTRVYPSGAFSGWLTLGLESPHTHYLRQVYLDG
VRAVEALANQPEVDEKRIGCMGKSQGGGLAVIAGGVINALGQEVNLKGGVKAVSAAMP
FLADFRSSYQLQKGGPLEELAWYFQLHDPEHQREEGIFTTLDYFDGVHFAPWLGKKTA
CLVSMGLKDTVCPPATVYWLYKGICGEKKLLIYPEYEHESPDGFVDRQIEFFAKELL"
misc_feature 407462..408433
/locus_tag="DSY0351"
/note="Acetyl xylan esterase (AXE1); Region: AXE1;
pfam05448"
/db_xref="CDD:203252"
misc_feature 407741..408433
/locus_tag="DSY0351"
/note="Prolyl oligopeptidase family; Region: Peptidase_S9;
pfam00326"
/db_xref="CDD:215859"
gene 408632..408949
/locus_tag="DSY0352"
/db_xref="GeneID:3953617"
CDS 408632..408949
/locus_tag="DSY0352"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516585.1"
/db_xref="GI:89893098"
/db_xref="GeneID:3953617"
/translation="MSYAAFFEPIFRRRFMEYQNAKNILPEKLIDEIQKYIQGQTLYI
PRKTSHKTGWGEMNGTKAALRERNQSIMRLYRVGSRIEDIAAQYYLSPDSVRKIVSTQ
NMD"
gene 409012..410769
/locus_tag="DSY0353"
/db_xref="GeneID:3953618"
CDS 409012..410769
/locus_tag="DSY0353"
/note="similarity to COG0642 Signal transduction histidine
kinase(Evalue: 8E-49)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516586.1"
/db_xref="GI:89893099"
/db_xref="GeneID:3953618"
/translation="MVSVFFNESFFLLVFYSASFNVKIDRGVLLKVKKLKYQLIIPTV
IIVFILMSINIVLVFQIQQKQAVNELKEKGLALTQQLDSTWEFLSINQHRINTSAKGD
FDFKGLNCSTAGMSIGVIFAEKNGYKIRYVNTNPRNPLNEPDPFEKRVLEKFANDTAI
DSYWELVKEEGQRYFCYVTPMRIDETCLECHGEPAGEMDISGYAKEGMKIGDLAGAIS
ITMPTTIQDQALVFNMFWQCMTFTLLIIGCVLAIYYFVTKRVTKPIEHLETAVKQVGE
GDLNVDLQNFRAAEEIEGLADHFNNMAKQLKELYSDLEHKVELRTSELGKANEQLQIK
QIQLEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFEDSSEEQIL
CEIKENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIH
LTARVERGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQ
DDGIGISKENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNK
GSTFIVLLPIERPQRGDAE"
misc_feature 409126..409677
/locus_tag="DSY0353"
/note="Protein of unknown function (DUF3365); Region:
DUF3365; pfam11845"
/db_xref="CDD:221261"
misc_feature 409708..410754
/locus_tag="DSY0353"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature 409789..409935
/locus_tag="DSY0353"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(409789..409794,409801..409806,409810..409815,
409822..409827,409831..409833,409882..409887,
409891..409896,409903..409908,409912..409917,
409924..409929)
/locus_tag="DSY0353"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 410056..410253
/locus_tag="DSY0353"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(410074..410076,410086..410088,410098..410100,
410107..410109,410119..410121,410128..410130,
410179..410181,410194..410196,410203..410205,
410215..410217,410224..410226,410236..410238)
/locus_tag="DSY0353"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 410092..410094
/locus_tag="DSY0353"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 410419..410733
/locus_tag="DSY0353"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(410434..410436,410446..410448,410455..410457,
410530..410532,410536..410538,410542..410544,
410548..410553,410632..410643,410689..410691,
410695..410697,410710..410715,410719..410721)
/locus_tag="DSY0353"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 410446..410448
/locus_tag="DSY0353"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(410542..410544,410548..410550,410632..410634,
410638..410640)
/locus_tag="DSY0353"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 410766..411455
/locus_tag="DSY0354"
/db_xref="GeneID:3953619"
CDS 410766..411455
/locus_tag="DSY0354"
/note="similarity to COG0745 Response regulators
consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain(Evalue: 1E-55)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516587.1"
/db_xref="GI:89893100"
/db_xref="GeneID:3953619"
/translation="MKIMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEA
PDLLILDVMLPGLDGFAVCEKIRSFSDVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPF
SSMELDFRIKALLRRPHRLEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEF
EVLAFLAKNRGQVFTREQLLDRIWGLDFEGDTNTVTVFIRRIREKIEADPAKPQYILT
VWGVGYKFKSK"
misc_feature 410766..411452
/locus_tag="DSY0354"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature 410775..411110
/locus_tag="DSY0354"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(410784..410789,410916..410918,410940..410942,
410997..410999,411054..411056,411063..411068)
/locus_tag="DSY0354"
/note="active site"
/db_xref="CDD:238088"
misc_feature 410916..410918
/locus_tag="DSY0354"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(410925..410930,410934..410942)
/locus_tag="DSY0354"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 411063..411071
/locus_tag="DSY0354"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 411159..411443
/locus_tag="DSY0354"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(411231..411233,411288..411293,411345..411347,
411354..411356,411378..411383,411417..411419,
411432..411434)
/locus_tag="DSY0354"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene complement(411577..412374)
/gene="dmsC"
/locus_tag="DSY0355"
/db_xref="GeneID:3958146"
CDS complement(411577..412374)
/gene="dmsC"
/locus_tag="DSY0355"
/EC_number="1.7.99.4"
/note="similarity to COG3302 DMSO reductase anchor
subunit(Evalue: 2E-21)"
/codon_start=1
/transl_table=11
/product="anaerobic DMSO reductase anchor subunit C"
/protein_id="YP_516588.1"
/db_xref="GI:89893101"
/db_xref="GeneID:3958146"
/translation="MHSWPLYLFTLAIQSAVGGCIMLMLYNILLKKVLAKDTLQKANL
KSLTALTVLSVLGLGFSFFDIGYPLNAVNAITNLGASWLSREILFTVLFIALVSVALA
ANWKTQHLSQALLAAAGIAGLAVIFAMGSLYSHTIFEPWNSFNTLIGFYGSTIILGAV
LINLIFFPVFKNTRGSFEAIKLPTLLAVLAAFIIQFAFIAALGSSLAILNPAMSLVRW
FCSALAALLLVYLYFKDPKKSELLYISFGLLLVGELIGRYLFYLPLS"
misc_feature complement(<411880..412374)
/gene="dmsC"
/locus_tag="DSY0355"
/note="DMSO reductase anchor subunit (DmsC); Region: DmsC;
cl17519"
/db_xref="CDD:248073"
gene complement(412400..412972)
/gene="dmsB"
/locus_tag="DSY0356"
/db_xref="GeneID:3958130"
CDS complement(412400..412972)
/gene="dmsB"
/locus_tag="DSY0356"
/EC_number="1.7.99.4"
/note="similarity to COG0437 Fe-S-cluster-containing
hydrogenase components 1(Evalue: 8E-60)"
/codon_start=1
/transl_table=11
/product="anaerobic DMSO reductase iron-sulfur subunit B"
/protein_id="YP_516589.1"
/db_xref="GI:89893102"
/db_xref="GeneID:3958130"
/translation="MMSVQYGFYINQSRCSGCHACQTSCNDKNDLEPGRLFRRIKETD
GGEFTPFNQGYAHNAYAFFTSISCNHCEHPKCTEACPSGAMHKDPETGIVSVNQNRCI
GCRYCTWACPYGAPQYNKEAGRMSKCDFCADLLSQGETPVCVAACPYEALDYGPIEEL
RAKYGTLADSPDLPSSDETHPNIVLKPHKR"
misc_feature complement(412478..412960)
/gene="dmsB"
/locus_tag="DSY0356"
/note="DMSO reductase, iron-sulfur subunit; Region:
DMSO_dmsB; TIGR02951"
/db_xref="CDD:131996"
misc_feature complement(412628..412696)
/gene="dmsB"
/locus_tag="DSY0356"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:243197"
gene complement(412997..415345)
/gene="dmsA"
/locus_tag="DSY0357"
/db_xref="GeneID:3958114"
CDS complement(412997..415345)
/gene="dmsA"
/locus_tag="DSY0357"
/EC_number="1.7.99.4"
/note="similarity to COG0243 Anaerobic dehydrogenases,
typically selenocysteine-containing(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="anaerobic DMSO reductase subunit A"
/protein_id="YP_516590.1"
/db_xref="GI:89893103"
/db_xref="GeneID:3958114"
/translation="MMNLSRRSFLKWSATLGAMGTGLMSLTACSQNASLTGSEAASAG
EQIIPTASTQDCGGRCLIKAHVKDGVITRISTRGAYEEDEPGANMKACLRGRSYRKHL
YHPDRLKYPMKRVGKRGEGKFEQISWEEAIDTIAKETRRIFDQYGPESRYCNVGTGDT
GGVIYRMGLGGRFLSATGGHLPLYNSVSMGNTGTATPYVYGVAATASSLDSLKDTKLV
ILWGHNTTETIFGASNYYFRQMKNRGCKFICVDPRNSNTAVAFADEWIPLLPTTDNAL
MDAMAYVIVSENLHDQAFLDQYVQGFDEEHMPEGVPAHESLVSYLFGKKDGVEKTPEW
AEAICKVPAETIRRIAREYATTKPAALIQGWGPQRHSCGERTALGATMLASITGNVGV
LGGWAGGYIGLSRKGCVGLPDVPNPYPGAIPTLSWVDAIECPEKVTPAEGLLGVDKLN
SPIKMLLNLAGDFIANQNPDINRTIRVLEDESLVEFIVVSDLFMTPSARYADILLPGN
TFFERYNIGATWNNGDYFILSQKIVDNYYESRSEYDWLAEVADKLGAKDVFTGGKTEE
EWVRWIVDETRAKYPETLSWEELEKVGISKFHYDGPRVAFQDQIEDPVNNPFPTPSGK
IELFSKTLYDMHNPEIPAIPVYVPAWEGPEDELTEKYPLQLIGWKTKARDNSTFYNNP
WLQQAMVQEVWINPMDAKPRNIVTGDRVKVFNDRGTTMLQARVTSRVIPGVIAAPTGS
WFTPDGKGGCTNGNLNVLTTLRKTALSHGNTQHTSLVEISKL"
misc_feature complement(413003..415336)
/gene="dmsA"
/locus_tag="DSY0357"
/note="anaerobic dimethyl sulfoxide reductase, A subunit,
DmsA/YnfE family; Region: dmsA_ynfE; TIGR02166"
/db_xref="CDD:233756"
misc_feature complement(413387..415201)
/gene="dmsA"
/locus_tag="DSY0357"
/note="This CD (MopB_DmsA-EC) includes the DmsA enzyme of
the dmsABC operon encoding the anaerobic dimethylsulfoxide
reductase (DMSOR) of Escherichia coli and other related
DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this
group has a predicted...; Region: MopB_DmsA-EC; cd02770"
/db_xref="CDD:239171"
misc_feature complement(order(415070..415072,415166..415168,
415178..415180,415190..415192))
/gene="dmsA"
/locus_tag="DSY0357"
/note="putative [Fe4-S4] binding site [ion binding]; other
site"
/db_xref="CDD:239171"
misc_feature complement(order(413720..413722,413807..413809,
413861..413863,413873..413878,413942..413944,
413948..413950,413960..413962,413966..413968,
414239..414241,414248..414253,414527..414529,
414533..414538,414590..414598,414662..414667,
414680..414682,414782..414784))
/gene="dmsA"
/locus_tag="DSY0357"
/note="putative molybdopterin cofactor binding site
[chemical binding]; other site"
/db_xref="CDD:239171"
misc_feature complement(413003..413365)
/gene="dmsA"
/locus_tag="DSY0357"
/note="The MopB_CT_DmsA-EC CD includes the DmsA enzyme of
the dmsABC operon encoding the anaerobic dimethylsulfoxide
reductase (DMSOR) of Escherichia coli and other related
DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this
group has a predicted...; Region: MopB_CT_DmsA-EC;
cd02794"
/db_xref="CDD:239195"
misc_feature complement(order(413027..413032,413078..413080,
413132..413134,413315..413323,413327..413329,
413336..413341,413345..413347))
/gene="dmsA"
/locus_tag="DSY0357"
/note="putative molybdopterin cofactor binding site; other
site"
/db_xref="CDD:239195"
gene complement(415345..415980)
/locus_tag="DSY0358"
/db_xref="GeneID:3953620"
CDS complement(415345..415980)
/locus_tag="DSY0358"
/note="similarity to COG3381 Uncharacterized component of
anaerobic dehydrogenases"
/codon_start=1
/transl_table=11
/product="anaerobic dehydrogenase"
/protein_id="YP_516591.1"
/db_xref="GI:89893104"
/db_xref="GeneID:3953620"
/translation="MGVHEGRLYVYQLLKHLFEQPLNREGLIELQEQPGLKELAQISS
GAQSINDFLVTNKDEYPETLCQALQAEYQRLFVGPGQVLVPIWESVYFDPEHLMFGER
TLAVREFYRKYHLESIHKNRQPEDHLAVELEFMTYLIGQYLASEDDVQQTKLLRDQKE
FIQKHLATWKDEFLQFLEKSTGCLLYRGGGQLLKEFLDMECETFEHLEEVS"
misc_feature complement(415456..415809)
/locus_tag="DSY0358"
/note="Nitrate reductase delta subunit; Region:
Nitrate_red_del; pfam02613"
/db_xref="CDD:217142"
gene 416909..419035
/locus_tag="DSY0359"
/db_xref="GeneID:3953621"
CDS 416909..419035
/locus_tag="DSY0359"
/note="similarity to COG0370 Fe2+ transport system(Evalue:
1E-139)"
/codon_start=1
/transl_table=11
/product="ferrous iron transport protein B"
/protein_id="YP_516592.1"
/db_xref="GI:89893105"
/db_xref="GeneID:3953621"
/translation="MEQLAEKSKKREFVKHPGLGETGIFHTKADGDPLPDSQLLTFAL
AGNQNCGKTTLFNQLTGSNQRVGNFPGVTVDRKDGVIKGHANTLVTDLPGIYSMSPYS
NEELVTRQFLLQDKPKGIINIVDATNIERNLYLTIQLMELNIPMVLALNMMDEVRENG
GSIHINEMENRLGIPVVPIAASKNEGIQELVDHAIHVAKNQERPGRMDFCDPDHDNGA
VHRCLHAIIHLIEDHAKRAQIPLRFAASKVAEGDEEILKALNLNQNELELLGHIIQQM
EDERGLDHGAAIADMRFKFIKEICDATVVKPKESKEYARSVAIDNVLTGKYTAIPAFV
GIMSLVFWLTFGVIGTWLADGLDLGITWLSELVDLGLTAYGINPVVHSLIIDGIFAGV
GSVLSFLPIIVTLFFFLSILEDSGYMARVAFVMDKLLRKIGLSGRSIVPMLIGFGCSV
PGVMASRTLPSERDRKMTILLTPFMSCSAKLPIYALFTAAFFPRYGALVMIGLYFTGI
VTGVVFALLLKGTMFKGEPVPFVMELPNYRMPGFKNVWQLLWDKAKDFITRAFTVIFV
ATIIIWFLQYFDPRLNAVSDSQDSLLALVSGIIAPIFVPLGFGDWRISTALITGFMAK
ESVVSTLTVLLGGSTASLSTMFTPFSAIVFLVFTLLYTPCVAAIASVRRELGGKWAVG
VAVMQCVIAWVVALFVNLLGIMMGWV"
misc_feature 417017..419029
/locus_tag="DSY0359"
/note="Fe2+ transport system protein B [Inorganic ion
transport and metabolism]; Region: FeoB; COG0370"
/db_xref="CDD:223447"
misc_feature 417035..417508
/locus_tag="DSY0359"
/note="Ferrous iron transport protein B (FeoB) family;
Region: FeoB; cd01879"
/db_xref="CDD:206667"
misc_feature 417044..417067
/locus_tag="DSY0359"
/note="G1 box; other site"
/db_xref="CDD:206667"
misc_feature order(417053..417055,417059..417070,417359..417364,
417368..417370,417446..417454)
/locus_tag="DSY0359"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206667"
misc_feature 417122..417136
/locus_tag="DSY0359"
/note="Switch I region; other site"
/db_xref="CDD:206667"
misc_feature 417125..417127
/locus_tag="DSY0359"
/note="G2 box; other site"
/db_xref="CDD:206667"
misc_feature 417179..417190
/locus_tag="DSY0359"
/note="G3 box; other site"
/db_xref="CDD:206667"
misc_feature order(417188..417244,417254..417259)
/locus_tag="DSY0359"
/note="Switch II region; other site"
/db_xref="CDD:206667"
misc_feature 417359..417370
/locus_tag="DSY0359"
/note="G4 box; other site"
/db_xref="CDD:206667"
misc_feature 417446..417454
/locus_tag="DSY0359"
/note="G5 box; other site"
/db_xref="CDD:206667"
misc_feature 418091..418381
/locus_tag="DSY0359"
/note="Nucleoside recognition; Region: Gate; pfam07670"
/db_xref="CDD:219507"
misc_feature 418403..418564
/locus_tag="DSY0359"
/note="Ferrous iron transport protein B C terminus;
Region: FeoB_C; pfam07664"
/db_xref="CDD:203715"
misc_feature 418577..418942
/locus_tag="DSY0359"
/note="Nucleoside recognition; Region: Gate; pfam07670"
/db_xref="CDD:219507"
gene complement(419261..419722)
/locus_tag="DSY0360"
/db_xref="GeneID:3953622"
CDS complement(419261..419722)
/locus_tag="DSY0360"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516593.1"
/db_xref="GI:89893106"
/db_xref="GeneID:3953622"
/translation="MNKKKGLLWVALLLILLAFTGCTGSDDQYAPDKAAIETLVNDYF
TAAFNIDYTTWTGENELPFLTPDQAKIMQGRFADFKQSFVDNQLTQAVDSVEIIRVNI
ETETSGNVYCIIKVSGYDNGSAYRETIEYSMPVKKIEGQWLIDDFKIQSIE"
gene 419889..420851
/locus_tag="DSY0361"
/db_xref="GeneID:3953623"
CDS 419889..420851
/locus_tag="DSY0361"
/note="similarity to COG1893 Ketopantoate
reductase(Evalue: 2E-48)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516594.1"
/db_xref="GI:89893107"
/db_xref="GeneID:3953623"
/translation="MNCQNSEKKGLETMNITIVGAGATGGYFGARLAASGLNVTFLVR
EKRAAQLREKGLVIKSVVEDLTLATPQIAINAEDIPACDLVLLGLKNYQLAASLPQLK
VLVNRGAKILPFLNGVEHFEILAKELGQENVLGGVCKIISTLDSEGTIHHTSKVHQII
FGELEPSGKEFCLGLEQAMAKANFKVKYTENILNEIWSKYAFIAVFSGVTSAGDLTTD
QICAHEATVKVYRRSLEEMKSLADAYGVALSEDFVEQNVEGLPKYAKGSTSSMHQDMR
KGLLLEVESLQGAAIRLAGRKNMELPTIETLYGLIKPYEMGSVE"
misc_feature 419928..420833
/locus_tag="DSY0361"
/note="2-dehydropantoate 2-reductase; Provisional; Region:
PRK12921"
/db_xref="CDD:183829"
misc_feature 419934..420386
/locus_tag="DSY0361"
/note="Ketopantoate reductase PanE/ApbA; Region: ApbA;
pfam02558"
/db_xref="CDD:217105"
misc_feature 420459..420833
/locus_tag="DSY0361"
/note="Ketopantoate reductase PanE/ApbA C terminal;
Region: ApbA_C; pfam08546"
/db_xref="CDD:219895"
gene 421247..422083
/locus_tag="DSY0362"
/db_xref="GeneID:3953624"
CDS 421247..422083
/locus_tag="DSY0362"
/note="similarity to COG1348 Nitrogenase subunit NifH
(ATPase)(Evalue: 7E-62)"
/codon_start=1
/transl_table=11
/product="nitrogenase subunit nifH"
/protein_id="YP_516595.1"
/db_xref="GI:89893108"
/db_xref="GeneID:3953624"
/translation="MCRRIALYGKGGIGKSTIASNLAAALAGSGLNVLLIGCDPKADS
TRNLTREGIPSVLETLARSEEVSIQNLLHTGDFGVSCVESGGPEAGIGCAGLGISTTL
EELTRLGVYDMDWDIILYDVLGDVVCGGFSVPMRKKHVDTVYIVTSADFMSLYAANNI
LKSVKRYSYTEKPLLGGILHNRADSAKERAVVQEFCRKTNSAYIAAMGQSTEIRLAEL
QRQTVLKAYSDGAAAQAFLELGRRMAGPGQASVPTPLCPQDMDAVGAAILRLLQDEEA
GE"
misc_feature 421253..422035
/locus_tag="DSY0362"
/note="Nitrogenase subunit NifH (ATPase) [Inorganic ion
transport and metabolism]; Region: NifH; COG1348"
/db_xref="CDD:224267"
misc_feature 421253..422032
/locus_tag="DSY0362"
/note="The Fer4_NifH superfamily contains a variety of
proteins which share a common ATP-binding domain.
Functionally, proteins in this superfamily use the energy
from hydrolysis of NTP to transfer electron or ion;
Region: Fer4_NifH; cl17203"
/db_xref="CDD:247757"
gene 422080..423744
/locus_tag="DSY0363"
/db_xref="GeneID:3953625"
CDS 422080..423744
/locus_tag="DSY0363"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516596.1"
/db_xref="GI:89893109"
/db_xref="GeneID:3953625"
/translation="MKTPLALCACTQETEEDTASSALFKRSDIAVVAVGPASCLRHLY
FLATRLQALQQLHLCCLTTREYALGNFRTKVRESLGRVLGKQAVRGVLVYGTCADILM
QVDFEELLAGIENPGDIPIKIFCRGPLAKRKMPAGKRLQMLYGELEEELSMASGQIYR
HGEKEFFLPPLAGDFAGVVSMLHAWQWELILYTPGGCRTGLQMDEPMGGPPCFYYTSY
NDIHAVLGSERKLVELMRESPRDQERIGRALIGTPVPHITGCDFEWVEQELANPEYPL
VCFPCNGFDTYAAGMSRALLTLGQTLFDSRKRESRQILLVGCSAMEPVSRGSLQRAVD
KVGEWGFSVSFLGDGDLESIRQAAAGSLCWCVSPAGEALAGWLEETFGTPWFTHLPIG
RSGMHRLWQLISERGEAPDGIMKGERAAAGGAAGAVVDVGDVPRILIISEPLTGLGIQ
QCLAEDFSYTGSTVAVHGLGGQSIVHFQNPEELQGLVCSADILIADPLYERLARSWGA
QPLFIAVPYPALSGNLYARSPIDLIGEAGYQYFASKLGKVRREKKQ"
misc_feature 422593..423705
/locus_tag="DSY0363"
/note="Nitrogenase component 1 type Oxidoreductase;
Region: Oxidored_nitro; pfam00148"
/db_xref="CDD:215749"
misc_feature 422725..>423297
/locus_tag="DSY0363"
/note="The nitrogenase enzyme system catalyzes the
ATP-dependent reduction of dinitrogen to ammonia. This
group contains both alpha and beta subunits of component 1
of the three known genetically distinct types of
nitrogenase systems: a molybdenum-dependent; Region:
Oxidoreductase_nitrogenase; cl02775"
/db_xref="CDD:243174"
gene 423741..424847
/locus_tag="DSY0364"
/db_xref="GeneID:3953626"
CDS 423741..424847
/locus_tag="DSY0364"
/note="similarity to COG0614 ABC-type
cobalamin/Fe3+-siderophores transport systems, periplasmic
components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516597.1"
/db_xref="GI:89893110"
/db_xref="GeneID:3953626"
/translation="MKRFCNGLLASALVLSLLLTGCGAAGGQQPAQASGPEQPAVRTV
TDAEGNVVEVPQDISRIAVTPLPWSSVVSAIDGGSQRLASINPGALKAYSGSFFAKLD
KNYATLDDTSIGSDFSINVEELLNRQVQVVIIWEYQTAEAAKLKDVGIVPVMVKNGNV
QELQDSFKAVGQLLGKEERAKWVNDEYAKAYEKMKSYGEQVKKADKPRVLYLKRSDLT
LQGNDNFIKESMELAGADNIAAEAKSITMEEILKLDPEIILLSDFDKFLPQDLYENRI
EGQDWSSVSAVVNKRVYKTPVGIYRWDAPGVETPLMMFWLGKMLQPEIFSEVDLKAEM
KAFYQDVFDYSLTDEDFGQIFNDKANAASERRIS"
misc_feature 423861..424718
/locus_tag="DSY0364"
/note="ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism]; Region: FepB; COG0614"
/db_xref="CDD:223687"
misc_feature 423864..424730
/locus_tag="DSY0364"
/note="Helical backbone metal receptor (TroA-like domain).
These proteins have been shown to function in the ABC
transport of ferric siderophores and metal ions such as
Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site
is formed in the interface between...; Region: TroA-like;
cl00262"
/db_xref="CDD:241735"
misc_feature order(424164..424169,424176..424178,424254..424256)
/locus_tag="DSY0364"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:238347"
gene 424859..425893
/locus_tag="DSY0365"
/db_xref="GeneID:3953627"
CDS 424859..425893
/locus_tag="DSY0365"
/note="similarity to COG0609 ABC-type
cobalamin/Fe3+-siderophores transport systems, permease
components(Evalue: 2E-70)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516598.1"
/db_xref="GI:89893111"
/db_xref="GeneID:3953627"
/translation="MHTNRKEGRAGAFPGLLILLFALLVILLLIAVGIGRYPLHPFTV
LQVLLAKWVAMEPTWPQQAEGVVFTLRLPRALAAILVGSALSLSGACYQGVFKNPLVA
PDVLGVSSGACIGASLGILLGWNASGIQLLAFTGGITAVALTTSIPKITRNQSMMMLV
LSGIIVGGLMSSIMGFIKYIADPETQLASITYWQMGSLAKVVSPDLVTVALPILTATG
ILLLLRWRINVLSLGDREAQSLGIPVIRSRRIVILCATVLTASAVCISGTIGWVGLVI
PHFGRMLVGPDNRKLLPVSCLLGGIFLLVIDTCARMMTSAELPLTILTGIVGAPFYFY
LLIKQRMKLS"
misc_feature <425033..425878
/locus_tag="DSY0365"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:236720"
misc_feature 425084..425866
/locus_tag="DSY0365"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(425135..425137,425147..425155,425519..425524,
425528..425536,425540..425545,425549..425566,
425570..425578,425699..425701,425720..425722)
/locus_tag="DSY0365"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(425150..425152,425156..425158,425171..425173,
425330..425332,425336..425341,425348..425353,
425360..425365,425372..425374,425381..425386,
425390..425392,425429..425434,425441..425443,
425669..425671,425822..425824,425831..425836,
425843..425845,425852..425857,425864..425866)
/locus_tag="DSY0365"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(425390..425392,425471..425473,425645..425647,
425657..425659,425789..425791,425813..425815)
/locus_tag="DSY0365"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 425890..426663
/locus_tag="DSY0366"
/db_xref="GeneID:3953628"
CDS 425890..426663
/locus_tag="DSY0366"
/note="similarity to COG1120 ABC-type
cobalamin/Fe3+-siderophores transport systems, ATPase
components(Evalue: 3E-47)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516599.1"
/db_xref="GI:89893112"
/db_xref="GeneID:3953628"
/translation="MILEVRDLCFAYGKGSRLLKNVCFTLKKGEIFSILGPNGAGKST
LLNCMMNLLTPESGSIQVHGQPLAAMDVREIAKTIGYVPQTHSLVYDYSVRDFVVMGR
TPYLAAFQQPGAQDYAMVDAALAQLGIARLSERPYTALSGGERQQVTIARTLVQRPQI
IILDEPTSYLDYGNQIRVLQLIKSLAADGYSIIMTTHMPDHALRLGGKVGILDRGGQF
SVGKTEEMLTTERLSDLYASDIRIVYVEELGRSICAAAQ"
misc_feature 425890..426648
/locus_tag="DSY0366"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:224045"
misc_feature 425899..426552
/locus_tag="DSY0366"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature 425995..426018
/locus_tag="DSY0366"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature order(426004..426009,426013..426021,426139..426141,
426379..426384,426478..426480)
/locus_tag="DSY0366"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature 426130..426141
/locus_tag="DSY0366"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature 426307..426336
/locus_tag="DSY0366"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature 426367..426384
/locus_tag="DSY0366"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature 426391..426402
/locus_tag="DSY0366"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature 426466..426486
/locus_tag="DSY0366"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene complement(426673..427626)
/locus_tag="DSY0367"
/db_xref="GeneID:3953629"
CDS complement(426673..427626)
/locus_tag="DSY0367"
/note="similarity to COG0583 Transcriptional
regulator(Evalue: 3E-56)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516600.1"
/db_xref="GI:89893113"
/db_xref="GeneID:3953629"
/translation="MTLQVLRYVIEVAACASISEAAKALFISQSTLSTAIKQLEEELG
IILFRRNNRGIALSPEGEDFLQFARQIVEQANYLENRYQQKKSSDMLFSVSTQRLPFS
VRAFVKLMETIGLEPFDIAIRECPTYEVIHDVEAGRSEIGVLAVQHRYLEIFRKLLHS
GGISQHKIHTLSPYVFVRKSHPLAQKNSLSIEELKEYPFITFDQGKNSGSHFTEEIVF
YSQLDKIVHVSDRCTKIALVRATDAFSIGPDLVNSNGDKMHAGQQEVCAIPLASQSEQ
LDILWIEKTSRPLTTTAELYVRLLADQVQHYFAAMPDKPDR"
misc_feature complement(426697..427626)
/locus_tag="DSY0367"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(427441..>427554)
/locus_tag="DSY0367"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(426727..427350)
/locus_tag="DSY0367"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature complement(order(426907..426912,426916..426921,
426937..426954,427255..427272,427288..427290,
427294..427296,427306..427308,427315..427320,
427324..427329))
/locus_tag="DSY0367"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 427875..429146
/locus_tag="DSY0368"
/db_xref="GeneID:3953630"
CDS 427875..429146
/locus_tag="DSY0368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516601.1"
/db_xref="GI:89893114"
/db_xref="GeneID:3953630"
/translation="MKQKYRLMITWALVAVMLGMTLTGCSGNAKVAAGDLMKGITKNP
VQLPQEMGGELNQALLDFTWKLFRESGADNGNVMISAPSVYLALGMALNGADGETREA
MLKALSAQNIKLEDFNAGLSAWSNSLMDEKNKTDVRIANSIWIRNGFEAAPAFLQTNG
DYYQAGIRSLDFADPSAPKIINQWVEEKTEGTIDKIIETMDDNLMMYLINAIYFKGDW
QEPFKAGRTYAGTFSAPAGSVETPFMRRSGNMDYIQGQGATGVILPYTDERFAFVGIL
PEEGKSPRDFINTTTATDMLKLISSKKIKNVDLSLPKFESSYENELQDELNALGMAIA
FDPSRADFSLMNKAHNKDLFIGGVKHKTYIKVDEKGTEAAAVTGVEVNTTSMPIDLTQ
VVFDRPFVYAIIDWQTNSPLFVGIMEDPTLR"
misc_feature 428037..429125
/locus_tag="DSY0368"
/note="SERine Proteinase INhibitors (serpins), prokaryotic
subgroup. Little information about specific functions is
available for this subgroup, most likely they are
inhibitory members of the serpin superfamily. In general,
serpins exhibit conformational...; Region:
bacterial_SERPIN; cd02049"
/db_xref="CDD:239004"
misc_feature order(428982..429014,429051..429068)
/locus_tag="DSY0368"
/note="reactive center loop; other site"
/db_xref="CDD:239004"
gene 429353..430015
/locus_tag="DSY0369"
/db_xref="GeneID:3953631"
CDS 429353..430015
/locus_tag="DSY0369"
/note="similarity to COG1802 Transcriptional
regulators(Evalue: 3E-27)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516602.1"
/db_xref="GI:89893115"
/db_xref="GeneID:3953631"
/translation="MSAITKSLPFHLQIYEILKGKILNGEISRGERLYENKISQELGV
SRSPVREALRMLEQDELVVVTSTGLIVNPMEFSDMEEIYQCRMALEPFAAKISADKLT
NEDLAALRNLVIQARVYHNQKAYEKVVESNTQFHDIIIQSSGNSRLIGIIEKIRSLII
LSRKTEFECYQREEGYLDEHEGVLEALTQRNGDEAERLLRIHIMNDFEFYSLAYEKVL
KK"
misc_feature 429353..429967
/locus_tag="DSY0369"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:225097"
misc_feature 429377..429544
/locus_tag="DSY0369"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(429377..429379,429383..429385,429452..429454,
429455..429460,429482..429496,429500..429505,
429512..429514,429542..429544)
/locus_tag="DSY0369"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 429593..429961
/locus_tag="DSY0369"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:219539"
gene 430077..430298
/locus_tag="DSY0370"
/db_xref="GeneID:3953632"
CDS 430077..430298
/locus_tag="DSY0370"
/note="similarity to COG0044 Dihydroorotase and related
cyclic amidohydrolases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516603.1"
/db_xref="GI:89893116"
/db_xref="GeneID:3953632"
/translation="MKTLIKNGTIITASEEQQQASDYTPYEGLRMKGGVAKVLLRGEV
IVDAGKYVGKPGDGKFIARQTLRSQNGKV"
misc_feature <430095..430250
/locus_tag="DSY0370"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:241750"
gene 430638..431966
/locus_tag="DSY0371"
/db_xref="GeneID:3953633"
CDS 430638..431966
/locus_tag="DSY0371"
/note="similarity to COG0477 Permeases of the major
facilitator superfamily(Evalue: 2E-92)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516604.1"
/db_xref="GI:89893117"
/db_xref="GeneID:3953633"
/translation="MSNASKQDHGPQNTLVGNVKRTNVRWYVFIAMLVLVTINYVDRA
VLSIAMPAIQKDLNLDPAIVGIILSSFFWGYALMQIPSGFLLDRVNPSKVVLGSAVGW
GIAQTLTGFVNSAGSLMFFRVLLGVTEAPIMPAGAKLQGIWLPSKERARGATIIDSGA
PLGTAVGGPIIIAFMAWFGGWRGALIGAGLMTIILGVICYYILKGNPATHKGVNQAER
EYIQTHLAQEQEEAQKETKTELKTSTYLSNKSFWGMCLGWFSFNTVFYGLLTWGPSFL
AQTQGIDIKAIGFSTLLIFGCGFVGELVGGQLVDKWRQVGGKYNTVMKTCIGIAGLAT
SASIFLLTRASSLTMAIALLSTALFFLRWAGIFWSVPAAIAQRHHVGVLGGCMNFAGN
IAGVITPIYIGLIVKFTGSFHAGLLIFVAAGVLLAVAGALINYEKKIGVV"
misc_feature 430722..431867
/locus_tag="DSY0371"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 430737..431873
/locus_tag="DSY0371"
/note="D-galactonate transporter; Region: 2A0114;
TIGR00893"
/db_xref="CDD:233174"
misc_feature order(430764..430766,430773..430781,430785..430790,
430839..430841,430848..430853,430860..430862,
430872..430877,430881..430886,431022..431027,
431034..431039,431046..431051,431058..431060,
431094..431099,431106..431111,431127..431129,
431421..431423,431430..431435,431442..431447,
431454..431456,431496..431498,431508..431510,
431520..431522,431529..431531,431541..431543,
431703..431705,431712..431717,431727..431729,
431739..431744,431751..431753,431784..431789,
431796..431801,431808..431813,431820..431822)
/locus_tag="DSY0371"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 432026..432772
/locus_tag="DSY0372"
/db_xref="GeneID:3953634"
CDS 432026..432772
/locus_tag="DSY0372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516605.1"
/db_xref="GI:89893118"
/db_xref="GeneID:3953634"
/translation="MRILVINPNISEIVTNLIAQESRRVASPGTELLFATAPFGVEYI
ETRMEALIGGYAAACVAAERQGEYDGVIIDAFGDPGLLGIKEMLNVPVVGMTEAALAS
ACLLGQRFSIIAISSRIKAWYLETVERSHLTTRLASIRSLNDTLRSIGTVQEDHAKRL
KELAMEAVEKDGADVIILAGAPLAGLARSLEGQLPVPVVDGVSSAVRHCESLIALNPG
CAVKGSFAQPPLKPNKGLPAALAALLDRTR"
misc_feature 432026..432709
/locus_tag="DSY0372"
/note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race;
cl00518"
/db_xref="CDD:241919"
gene 433011..433808
/locus_tag="DSY0373"
/db_xref="GeneID:3955910"
CDS 433011..433808
/locus_tag="DSY0373"
/note="similarity to COG0179 2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway)(Evalue: 3E-55)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516606.1"
/db_xref="GI:89893119"
/db_xref="GeneID:3955910"
/translation="MERYVRFNNGNKICFGLVKGDRVAELSGEEPADFKESGIEHELS
ALKLLAPCHPTKAVCVGLNYKDTVLEPGAQWPKEPLLFIKPSTSVANPGDDIIKWAMA
EELAFEAELAVVIGKKAHLVSEAEARDYIWGYTIANDVTAKDLQKADILWTRAKSFDT
FLPLGPWIVSGINADNLMITSSVNGQEKQKGTTADLIFGIEYLVSFISHITTLLPGDI
ILTGTPGGYGSSLDVNDKVEIEISEIGKLVNTCKVSSESWSLAPRHK"
misc_feature 433017..433163
/locus_tag="DSY0373"
/note="Domain of unknown function (DUF2437); Region:
DUF2437; pfam10370"
/db_xref="CDD:150960"
misc_feature 433077..433766
/locus_tag="DSY0373"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:223257"
misc_feature 433176..433760
/locus_tag="DSY0373"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:216570"
gene complement(433923..434720)
/locus_tag="DSY0374"
/db_xref="GeneID:3955911"
CDS complement(433923..434720)
/locus_tag="DSY0374"
/note="similarity to COG3473 Maleate cis-trans
isomerase(Evalue: 8E-26)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516607.1"
/db_xref="GI:89893120"
/db_xref="GeneID:3955911"
/translation="MSALQPASYKWRDTHMQKTMFDPAEQKKIGMLTPSSNTALEPVC
SRMVSGLENLVAMHYSRLEVTKISLEKDALSQFDLDPFLRASEFLAHADVDAIAWNGT
SGGWTGFDFDRMVCEKITEATGIPATTSMLAMLEAFEENKVKTLHMVTPYIPAIDELI
AKQFEEKCGYQVINSRGLNQTVNRSFSLVTPEQIDGMCKEVSVDPADGISIICTNLRS
TWQIEQLERDYGITVYDSTAVTVWKTLKMVGVDPGVVKGWGRLFTGK"
misc_feature complement(433926..434642)
/locus_tag="DSY0374"
/note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race;
cl00518"
/db_xref="CDD:241919"
gene complement(434842..435522)
/locus_tag="DSY0375"
/db_xref="GeneID:3955912"
CDS complement(434842..435522)
/locus_tag="DSY0375"
/note="similarity to COG0664 cAMP-binding domains -
Catabolite gene activator and regulatory subunit of
cAMP-dependent protein kinases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516608.1"
/db_xref="GI:89893121"
/db_xref="GeneID:3955912"
/translation="MSCIIPNIYSQPTDTNLWNILLSSGIPRHYQKGEFVFEKDQPSN
GLICLKKGKVKVSSFFSEGSEKIFGILVAPALFGETETLDQGPRMVSATALTHVEIVA
ISGNKTKELIYTYPDIALSIIQSIGVKLRWTTLQAEDLSTQKIEYRLARLLLDFKHYG
IFTSKNNDNCLMITHEELAHFIGTARSKVTTYLNEFAHKGLIRLRRGEIRILDTAGLN
KYTHKSQA"
misc_feature complement(434926..435468)
/locus_tag="DSY0375"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:223736"
misc_feature complement(435154..435462)
/locus_tag="DSY0375"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:237999"
misc_feature complement(order(435253..435261,435286..435291))
/locus_tag="DSY0375"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:237999"
misc_feature complement(order(435169..435177,435187..435195))
/locus_tag="DSY0375"
/note="flexible hinge region; other site"
/db_xref="CDD:237999"
misc_feature complement(434863..435081)
/locus_tag="DSY0375"
/note="helix_turn_helix, cAMP Regulatory protein
C-terminus; DNA binding domain of prokaryotic regulatory
proteins belonging to the catabolite activator protein
family; Region: HTH_CRP; cl17320"
/db_xref="CDD:247874"
misc_feature complement(435076..435081)
/locus_tag="DSY0375"
/note="putative switch regulator; other site"
/db_xref="CDD:238044"
misc_feature complement(order(434968..434970,434995..435003,
435007..435009))
/locus_tag="DSY0375"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:238044"
misc_feature complement(434950..434970)
/locus_tag="DSY0375"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238044"
misc_feature complement(order(434950..434952,434962..434967))
/locus_tag="DSY0375"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238044"
misc_feature complement(434962..434967)
/locus_tag="DSY0375"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:238044"
gene complement(435679..436749)
/locus_tag="DSY0376"
/db_xref="GeneID:3955913"
CDS complement(435679..436749)
/locus_tag="DSY0376"
/note="similarity to COG0388 Predicted amidohydrolase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516609.1"
/db_xref="GI:89893122"
/db_xref="GeneID:3955913"
/translation="MIEQYMALAIQPTMRGAEKREDIKRNIAHISDVIDAAVWLSGIE
MPVRLITIPEGALQGFTDELFDWDHQYYVDHMAIDIPGEETELLGKKAKEYNAYLIAQ
AKVKHPEFPGRFFNSAFLIDPKGEVILQSYKMQVFCQEHSTVPHDVWDKWIELYGYKL
DSFYSVADTEIGRIGLLVCQEGDYPEPARGLAMNGAEIIYRSSAPEPAVANGWWELQN
RARALDNTCYVVAPNVATYYPSQAAELSVDTFGGQSMIVNHHGEVISNHKYGSGSSYA
GAIIDVESLREYRERSLFGNWMKDLRTEQFKLIYEEPLFAKNLCLDRTPLKHKDTHEI
YRQHVRQLIERGIWVESTRSKK"
misc_feature complement(435841..436737)
/locus_tag="DSY0376"
/note="Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases); Region:
nitrilase_4; cd07582"
/db_xref="CDD:143606"
misc_feature complement(435862..436725)
/locus_tag="DSY0376"
/note="Predicted amidohydrolase [General function
prediction only]; Region: COG0388"
/db_xref="CDD:223465"
misc_feature complement(order(436138..436140,436201..436206,
436210..436215,436300..436302,436339..436341,
436351..436353,436588..436590))
/locus_tag="DSY0376"
/note="putative active site [active]"
/db_xref="CDD:143606"
misc_feature complement(order(436213..436215,436351..436353,
436588..436590))
/locus_tag="DSY0376"
/note="catalytic triad [active]"
/db_xref="CDD:143606"
misc_feature complement(order(435841..435855,435991..435996,
436078..436083,436087..436095,436099..436104,
436180..436185,436192..436206,436210..436212,
436276..436284,436303..436305,436339..436350))
/locus_tag="DSY0376"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143606"
gene 437258..437596
/locus_tag="DSY0377"
/db_xref="GeneID:3955914"
CDS 437258..437596
/locus_tag="DSY0377"
/note="similarity to COG1670 Acetyltransferases, including
N-acetylases of ribosomal proteins(Evalue: 5E-23)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516610.1"
/db_xref="GI:89893123"
/db_xref="GeneID:3955914"
/translation="MILETARLILREMTQEDFPALRKIFQDKEVMYAYEGAFSLIEAQ
VWLDRQIERYRKEGFGLWAVVLKESGEMIGQCGLTMQGYKGGQVLEVGYLFRKESWHY
GYASEAGYRL"
misc_feature 437276..>437581
/locus_tag="DSY0377"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:222034"
gene 437813..439369
/locus_tag="DSY0378"
/db_xref="GeneID:3955915"
CDS 437813..439369
/locus_tag="DSY0378"
/note="similarity to COG3835 Sugar diacid utilization
regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516611.1"
/db_xref="GI:89893124"
/db_xref="GeneID:3955915"
/translation="MKLNLAVFAYHLADYAPRLYDSEIHGLGVADVRFLDRQETFLSE
SVYIGMWDKLQALIKPPFYVVCIGRDETTDRWLEEHGVKALILDSEVELNEVFERLQD
IFQHYNRLESELLEAVLCKEPLNVLLNICAKFFANPTFITDAALCLVATCDNFAHPET
DRAWQETIESGRSSSELLLLMKRKKLTNLLNTSRKAEFVNVGENYSKIICANYFDQEV
RIATFTVSEAYTPLSPLQAGLVDHVAKLLTAEVRKQHKASSRYLFAIRSNISNLLHGQ
KIDEAILKTNFAHIGWTDQEDYRLLKIPLTTAELADGTAGHNRKIYESIFPHYVSLDL
NEVLILVIRCARDTEADKRRFAELKKHLKNENAACGVSKTFHDFDMLGEEYKLANAAL
EIGSWKYPKEALYFYEDMMLEHLFSEGSRIFNLRSLCHDSVLRIAEHDQQNNSSLLQT
LKVYLLQEKSLLAASQELHIHRNTLVYRLGKIEQISGLDLNSPLIRLQGILSCLILEY
LNGLEEKAPD"
misc_feature <438767..439336
/locus_tag="DSY0378"
/note="Sugar diacid utilization regulator [Transcription /
Signal transduction mechanisms]; Region: CdaR; COG3835"
/db_xref="CDD:226355"
misc_feature 439160..439327
/locus_tag="DSY0378"
/note="PucR C-terminal helix-turn-helix domain; Region:
HTH_30; pfam13556"
/db_xref="CDD:205734"
gene 439512..440921
/locus_tag="DSY0379"
/db_xref="GeneID:3955916"
CDS 439512..440921
/locus_tag="DSY0379"
/note="similarity to COG0404 Glycine cleavage system T
protein (aminomethyltransferase)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516612.1"
/db_xref="GI:89893125"
/db_xref="GeneID:3955916"
/translation="MSSDNQRAQFQVVTGNESPAIYHQFSPALETATLLFQMAPGLLV
PYEFGGVEYEIDGYRKSAWIGTTLMISPIYDVVGPDAVKFLNSICVNDFTNLTTKGLR
HAVICNDQGQVLTDGVVIRIGEDRYRTYWLNPPIDYFLKTSGMNVAGEDLSGTEYFIQ
IAGERSLEILEDAFASDLHDIKFATHRKASMDGKEVEIIRLGMSGNLAYEIHGPMAEF
DEVYRKIWNSGQKFGARKLGMHAYNLFNHTEAGFPNIHLHYPLPWFESGEDMAKYMLA
NPQYSMYNLNRKLVGSVGEELQARFVTPYDVGWGFLVKFNHEFRGRKALEEIANDPPR
TAVTLEWNGDDVGAVFATQFKPGEEACESIGAESEGMFTSNTFRGEMAYRSNRVLYNG
KDIGISSGRIVSYHYNSMISLGFIDPAYAKEGNELTLIWGTPGTRQMNIRVKVARYPY
NGDFVRNENKDVEEIPRHK"
misc_feature 439731..440897
/locus_tag="DSY0379"
/note="Glycine cleavage system T protein
(aminomethyltransferase) [Amino acid transport and
metabolism]; Region: GcvT; COG0404"
/db_xref="CDD:223481"
gene 441148..441687
/locus_tag="DSY0380"
/db_xref="GeneID:3955917"
CDS 441148..441687
/locus_tag="DSY0380"
/note="similarity to COG3404 Methenyl tetrahydrofolate
cyclohydrolase(Evalue: 8E-22)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516613.1"
/db_xref="GI:89893126"
/db_xref="GeneID:3955917"
/translation="MEKVASLPSTPAGGSVAALNAASAAALAEMASRLTADKMEDGAL
AKELKGMAEVFHSYRVKFTDAIDEDAKVFSEVLSAYKLAADSAENRKIRDEKIQESYK
KAVIVPIKLAEDIWAMMQLIKMQHHHIGDSYITDSAQAYMLAEAALKSLLYHIKSNLM
YIRDKEFTEKIEEVLEQFG"
misc_feature <441286..441657
/locus_tag="DSY0380"
/note="Formiminotransferase-cyclodeaminase; Region:
FTCD_C; pfam04961"
/db_xref="CDD:218351"
gene 441855..442157
/locus_tag="DSY0381"
/db_xref="GeneID:3955918"
CDS 441855..442157
/locus_tag="DSY0381"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516614.1"
/db_xref="GI:89893127"
/db_xref="GeneID:3955918"
/translation="MAKRHSYGVVQMKKKAILTIPKEVRLALHLADEGELFEIIVDNG
KIILEPKTLIPKEQEWFWTERWQAGEREAEEDIKAGRVSPAFDNVKDLLEALNNED"
misc_feature 441882..442010
/locus_tag="DSY0381"
/note="SpoVT / AbrB like domain; Region: SpoVT_AbrB;
smart00966"
/db_xref="CDD:198034"
gene 442551..443171
/locus_tag="DSY0382"
/db_xref="GeneID:3955919"
CDS 442551..443171
/locus_tag="DSY0382"
/note="similarity to COG1846 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516615.1"
/db_xref="GI:89893128"
/db_xref="GeneID:3955919"
/translation="MHHMGETKKEILGRFMRLQGLLHRYQAQNFMNFGPWGNPQRGQG
RVLALLKMKPEISQKELTYLLDMSKQGLAELLNKLEKNEFITRETSEEDRRSVNIKLT
EKGAAVAGEMGDMPPELEKLFDVLNDEELANLSDYLKRITERLEEQFTDGDGDLRKQM
MERLRQCHHHHGRNFGGHRGDFHGFYGGVFPHRRGGRRDDDGEREE"
misc_feature 442671..442841
/locus_tag="DSY0382"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
misc_feature <442800..443009
/locus_tag="DSY0382"
/note="MarR family; Region: MarR_2; cl17246"
/db_xref="CDD:247800"
gene 443332..443652
/locus_tag="DSY0383"
/db_xref="GeneID:3955920"
CDS 443332..443652
/locus_tag="DSY0383"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516616.1"
/db_xref="GI:89893129"
/db_xref="GeneID:3955920"
/translation="MADPKFTQRNLRFRSPFFRSWSLIWVWFSKECEMFRASISFLSL
FSNPSLLDKRVFIYVGRDFFVHSLLGAGYEQGMAIVKICGFKCLEGAGWKFRHSPQSG
LGGY"
gene 444274..444939
/locus_tag="DSY0384"
/db_xref="GeneID:3955921"
CDS 444274..444939
/locus_tag="DSY0384"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516617.1"
/db_xref="GI:89893130"
/db_xref="GeneID:3955921"
/translation="MSYSRSTASRLMKIFREYGPILSSTDGEEGSNGAPVQHLNYTQG
IALFGISVEDRDQFIADNDVGKMSKRELQQTVKVRERTAEEEERREPENQGVQNQEKT
EEAADKAMDKPLELIPVERKIIKPKTVPTAQTELPQEDANPESMKYNAQYATHRDTML
SAYGELLKTLVALNRVDPVKKEANRKEALKITTNMAETLKQYPPAIKTNLKIKRTEPG
APN"
misc_feature <444277..444504
/locus_tag="DSY0384"
/note="Protein of unknown function (DUF3102); Region:
DUF3102; pfam11300"
/db_xref="CDD:221066"
gene complement(445132..445746)
/locus_tag="DSY0385"
/db_xref="GeneID:3955922"
CDS complement(445132..445746)
/locus_tag="DSY0385"
/note="similarity to COG1124 ABC-type
dipeptide/oligopeptide/nickel transport system, ATPase
component(Evalue: 5E-50)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516618.1"
/db_xref="GI:89893131"
/db_xref="GeneID:3955922"
/translation="MELEAKGICFRYMSKTAPILNNVDFTLKEGDKLALVGPSGCGKS
TLAKILAGYIRPSGGTVLLDGKPLPDQGYSPVQMIYQHPELAVNPRWKMSKIAHECWT
PNDELLKDMGIEKEWMSRWPTELSGGELQRFCVVRALGPETRFLICDEITTMLDVITQ
AQLWQTILDIAEKNKLGMIVVTHNNYLADKVCDRVIKLTDINHI"
misc_feature complement(445147..445746)
/locus_tag="DSY0385"
/note="ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism]; Region: CbiO;
COG1122"
/db_xref="CDD:224047"
misc_feature complement(445159..445740)
/locus_tag="DSY0385"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature complement(445615..445638)
/locus_tag="DSY0385"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature complement(order(445198..445200,445297..445302,
445504..445506,445612..445620,445624..445629))
/locus_tag="DSY0385"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature complement(445504..445515)
/locus_tag="DSY0385"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature complement(445345..445374)
/locus_tag="DSY0385"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature complement(445297..445314)
/locus_tag="DSY0385"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature complement(445279..445290)
/locus_tag="DSY0385"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature complement(445192..445212)
/locus_tag="DSY0385"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
gene complement(445772..446635)
/locus_tag="DSY0386"
/db_xref="GeneID:3955923"
CDS complement(445772..446635)
/locus_tag="DSY0386"
/note="similarity to COG1173 ABC-type
dipeptide/oligopeptide/nickel transport systems, permease
components(Evalue: 2E-65)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516619.1"
/db_xref="GI:89893132"
/db_xref="GeneID:3955923"
/translation="MYDNKLTPVGKLRLPGINIRTRMLILIFISAIYLFGILIWGFYM
EESLYEVSYTHKFIPPGLEHPFGTDFMGRDMFYRSIKGLSTSLVIGVLASAVSSILAL
LLGIAAATIGGKFDQFVNWCVDCCMGLPHLVLLVLISFMLDRGVKGVAIAVALTHWPE
LTRIVRAEVLQIRSSQYVQLSYKAGKSKFWVAKEHMVPHVLPTYLIGLVLLFPHAIMH
EAALTFLGFGLPAESPAIGAILSEAMVHIATGKWWLALFPGLLLLIAVILFDVIGENL
KNLLNPNSGNE"
misc_feature complement(445790..446587)
/locus_tag="DSY0386"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:224094"
misc_feature complement(445907..446302)
/locus_tag="DSY0386"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(445919..445924,445964..445969,
445976..445987,446006..446008,446015..446020,
446060..446062,446111..446113,446120..446125,
446135..446137,446141..446146,446153..446155,
446159..446161,446165..446170,446219..446221,
446225..446230,446237..446266,446270..446281))
/locus_tag="DSY0386"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(445970..445987,446219..446263))
/locus_tag="DSY0386"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(445919..445921,445928..445930,
445967..445969,446183..446185,446219..446221))
/locus_tag="DSY0386"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(446039..446041,446051..446056,
446072..446110))
/locus_tag="DSY0386"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(446628..447611)
/locus_tag="DSY0387"
/db_xref="GeneID:3955924"
CDS complement(446628..447611)
/locus_tag="DSY0387"
/note="similarity to COG0601 ABC-type
dipeptide/oligopeptide/nickel transport systems, permease
components(Evalue: 2E-81)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516620.1"
/db_xref="GI:89893133"
/db_xref="GeneID:3955924"
/translation="MTSAKHIVSILVRMVLLLMAVCVIAFVLITSSPIDPLVSYIGTN
STLSEEAKQEISDYWGLNDPLPERFSAWTANVLQGDFGDSITYKKPVRDVIWERFSYS
AVLMLVAWAASGVLGFLIGIAAGMRKGSVFDRSVKMFCLGLQSAPTFWLGLLILSLFA
VTLGWFPIGMAAPMGKLASEVTLGDRAYHLVLPALTLTVVSISKITLYTRQKLIETMG
NDYILFAKARGENERQLVTRHVLRNIALPAITIQFASFSELFGGMALAETVFAYPGIG
TATTAAALNGDVPLLLGIAIFSALFVFSGNLIANILYGVLDPRVKEGGDYV"
misc_feature complement(446640..447599)
/locus_tag="DSY0387"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:223674"
misc_feature complement(446691..447317)
/locus_tag="DSY0387"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(446691..446696,446703..446708,
446715..446720,446724..446729,446736..446741,
446769..446774,446808..446813,446820..446831,
446850..446852,446859..446864,446904..446906,
446955..446957,446964..446969,446979..446981,
446985..446990,446997..446999,447003..447005,
447009..447014,447144..447146,447150..447155,
447162..447191,447195..447206,447237..447239,
447252..447257,447264..447269))
/locus_tag="DSY0387"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(446814..446831,447144..447188))
/locus_tag="DSY0387"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(446739..446741,446769..446771,
446775..446777,446811..446813,447027..447029,
447144..447146))
/locus_tag="DSY0387"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(446883..446885,446895..446900,
446916..446954))
/locus_tag="DSY0387"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(447725..449383)
/locus_tag="DSY0388"
/db_xref="GeneID:3955925"
CDS complement(447725..449383)
/locus_tag="DSY0388"
/note="similarity to COG0747 ABC-type
dipeptide/oligopeptide/nickel transport systems,
periplasmic components(Evalue: 3E-67)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516621.1"
/db_xref="GI:89893134"
/db_xref="GeneID:3955925"
/translation="MILRRRILMKKKLALVLSILLMLLVTACSSGTGAGKPAETTPSQ
EGAVPPPADGIVAYVGGTIFDSSLDPIKGAMSYGYSFTNCALLRMNPDSEYEGDMATK
WSISEDSLVYTYKLRENVKFSDGSDFTADDVVFTYTTVKENQAHNENVDLTKLASVKA
LNDYTVEFTLSEPYSPFLDATACLGIVPSDSYDSKKFDQYPIGTGAWIVTQYDANQQI
IVKANENYYEGAPAIKKVTFVSMNSEAAFSNAKSGQLDIVMIGPNYTSEKVAHMMTER
FATMDIRMINLPVLKEQTMKNPDGKDIKVGNNVTSDINVRKALAIGIDRQTIINHAFN
GVGKPAVSFTANLQWASTDTYADNRKVEASALLQDAGWVDTDGDGIREKNGLKCEFDV
YAPGSDNDRFLLANAVAEDALKLGVKINVKTASWDEVANLQSTSGIVWGWGQYSPTVL
NSLFNSQLFLKGAYDNVSGYANPQVDADIQKAFTSTTHDGAVAAWKAVQATANQDYPY
LYIVNIEHCYLVKDSLDLSLDTQIAHPHGHGSPIICNMKDWNYK"
misc_feature complement(447824..449311)
/locus_tag="DSY0388"
/note="ABC-type dipeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
DdpA; COG0747"
/db_xref="CDD:223818"
misc_feature complement(447803..449227)
/locus_tag="DSY0388"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_19; cd08518"
/db_xref="CDD:173883"
gene 449625..449924
/locus_tag="DSY0389"
/db_xref="GeneID:3955926"
CDS 449625..449924
/locus_tag="DSY0389"
/note="similarity to COG1937 Uncharacterized BCR(Evalue:
2E-28)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516622.1"
/db_xref="GI:89893135"
/db_xref="GeneID:3955926"
/translation="MSEKGHSHTQHHHHHHHTKAVLNRLSRAIGHLESVKRMVEEEKD
CSEVLIQLSAVIAALNNTGKVILKDHIEHCIVDAWEHSDEEAMENLNKAIDRFIK"
misc_feature 449679..449918
/locus_tag="DSY0389"
/note="Uncharacterized family 1; belongs to a superfamily
containing the transcriptional regulators CsoR
(copper-sensitive operon repressor), RcnR, and FrmR, and
related domains; this family was previously known as part
of DUF156; Region: CsoR-like_DUF156_1; cd10158"
/db_xref="CDD:197393"
misc_feature order(449685..449690,449697..449702,449709..449711,
449718..449723,449727..449732,449739..449750,
449754..449762,449766..449774,449778..449783,
449787..449792,449799..449804,449811..449816,
449820..449828,449832..449840,449847..449849,
449871..449876,449880..449909)
/locus_tag="DSY0389"
/note="putative homotetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:197393"
misc_feature order(449685..449690,449697..449702,449709..449711,
449718..449723,449727..449732,449739..449750,
449754..449762,449766..449774,449778..449783,
449787..449792,449799..449804,449811..449813,
449820..449822,449832..449834,449889..449891,
449898..449909)
/locus_tag="DSY0389"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:197393"
misc_feature order(449757..449759,449832..449834,449844..449846)
/locus_tag="DSY0389"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197393"
misc_feature order(449814..449816,449823..449828,449835..449840,
449844..449849,449871..449876,449880..449888,
449892..449897)
/locus_tag="DSY0389"
/note="putative homodimer-homodimer interface [polypeptide
binding]; other site"
/db_xref="CDD:197393"
misc_feature order(449832..449834,449889..449891)
/locus_tag="DSY0389"
/note="putative allosteric switch controlling residues;
other site"
/db_xref="CDD:197393"
gene 450702..451823
/locus_tag="DSY0390"
/db_xref="GeneID:3955927"
CDS 450702..451823
/locus_tag="DSY0390"
/note="similarity to COG0614 ABC-type
cobalamin/Fe3+-siderophores transport systems, periplasmic
components(Evalue: 7E-77)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516623.1"
/db_xref="GI:89893136"
/db_xref="GeneID:3955927"
/translation="MRKWLLFLMIPMLILMGCTSQVSQSSGQTDGGKENSAEKSTQVI
TDMMGRDVEVPTKINSIICTGAGALRLIAYAQATDLVIGIEDTDKSGVIGRPYNYVYH
DQFKDLPSIGKGGGRGYTAYEEQIIALQPDVIFCSYTSDALDQLAVKTGIPVVSTAIQ
GNLFEENTVQSLKLIGEILGREERCAEVIAYLDQYEADLNNRTKDIPEADKPTVYAGA
ISNQGGRGFAGTYGGLGPLKAIHISGVADEVGKKEGFEVDWEQIQVWDPDIIFLDPGN
LSLVNEEYVKKPDYFNSLRGVKEGNVYSIISFNNYTTNIEMAIADAYYAGKVLFPEKF
ADIDIEAKTDEIFEKFLGKGIYTEMKEAGLAFGKITLGQ"
misc_feature 450750..451709
/locus_tag="DSY0390"
/note="ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism]; Region: FepB; COG0614"
/db_xref="CDD:223687"
misc_feature 450861..451643
/locus_tag="DSY0390"
/note="Metal binding protein HemV-2. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding...; Region:
HemV-2; cd01147"
/db_xref="CDD:238567"
misc_feature 451017..451019
/locus_tag="DSY0390"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:238567"
gene 451813..452889
/locus_tag="DSY0391"
/db_xref="GeneID:3955928"
CDS 451813..452889
/locus_tag="DSY0391"
/note="similarity to COG0609 ABC-type
cobalamin/Fe3+-siderophores transport systems, permease
components(Evalue: 3E-98)"
/codon_start=1
/transl_table=11
/product="permease component of ABC-type
cobalamin/Fe3+-siderophores transport systems"
/protein_id="YP_516624.1"
/db_xref="GI:89893137"
/db_xref="GeneID:3955928"
/translation="MVNKRSRLHYREAYGNYMAGKRLVLLALIALLIGVALFSITAGS
AGLTLGEVFRTFMGTGTTQAQAIVWNVRLPRIFTAIVVGGALALAGCVMQSVLRNPLA
SSSTLGISHGAAFGAAIAIVYFSAGSQHNAAGSGAISITNPYLVTACAFMGGMISVFV
ILVLSRIKTVTPAAMVLAGVALSSLFRGGVALVQYFADDVALASVVYWTFGDLGRTSW
HEIGLILIILGPTFVYFMFNSWSYNGIQSGSQTARSLGIHVDQLIIVSMVLAALLAAS
AVSFVGIIDFVGLVAPHMVRKFVGSDYRFLLPASMLAGACILLLSDLCSRTIIAPIVL
PIGAITSFLGAPLFIYLIYKGAKK"
misc_feature 451927..>452886
/locus_tag="DSY0391"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:236720"
misc_feature 452083..452868
/locus_tag="DSY0391"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(452092..452094,452104..452112,452518..452523,
452527..452535,452539..452544,452548..452565,
452569..452577,452698..452700,452719..452721)
/locus_tag="DSY0391"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(452107..452109,452113..452115,452128..452130,
452332..452334,452338..452343,452350..452355,
452362..452367,452374..452376,452383..452388,
452392..452394,452428..452433,452440..452442,
452668..452670,452824..452826,452833..452838,
452845..452847,452854..452859,452866..452868)
/locus_tag="DSY0391"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(452392..452394,452470..452472,452644..452646,
452656..452658,452788..452790,452815..452817)
/locus_tag="DSY0391"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 452892..453671
/locus_tag="DSY0392"
/db_xref="GeneID:3955929"
CDS 452892..453671
/locus_tag="DSY0392"
/note="similarity to COG1120 ABC-type
cobalamin/Fe3+-siderophores transport systems, ATPase
components(Evalue: 5E-67)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516625.1"
/db_xref="GI:89893138"
/db_xref="GeneID:3955929"
/translation="MLKVQELSFQYGSHPVLEDVHFEAPYGQCVAILGNNGAGKSTLI
KCLNRILPPRSGQVLLDEQDLCSMSRTNVAKEMAYVAQHSETARFTVYDAVMLGRKPY
IRFSPTEADYEIVHGMIEKLELSQMSLAYIDELSGGELQKVMLARALTQQPKVLLLDE
PTSNLDLKNQHDMLGLVGKIAKEENICVLMVIHDLNLALRYCDRFLFIKDGGIYAYGD
EEIMNAKVIGEVYGIPVAIEYAHGAKIVVPFPEQGVKANKA"
misc_feature 452892..453641
/locus_tag="DSY0392"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:224045"
misc_feature 452898..453542
/locus_tag="DSY0392"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature 452991..453014
/locus_tag="DSY0392"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature order(453000..453005,453009..453017,453135..453137,
453366..453371,453468..453470)
/locus_tag="DSY0392"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature 453126..453137
/locus_tag="DSY0392"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature 453294..453323
/locus_tag="DSY0392"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature 453354..453371
/locus_tag="DSY0392"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature 453378..453389
/locus_tag="DSY0392"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature 453456..453476
/locus_tag="DSY0392"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene 453723..454253
/locus_tag="DSY0393"
/db_xref="GeneID:3953747"
CDS 453723..454253
/locus_tag="DSY0393"
/note="similarity to COG2191 Formylmethanofuran
dehydrogenase subunit E(Evalue: 2E-38)"
/codon_start=1
/transl_table=11
/product="formylmethanofuran dehydrogenase subunit E"
/protein_id="YP_516626.1"
/db_xref="GI:89893139"
/db_xref="GeneID:3953747"
/translation="MIMDKQLWEKAVAFHGHECPGLAIGFRACEAVQEKMGLKFSQDE
EVVCVTENDACGADAVQVITGCSFGKGNLIYRGTGKMAFSFFSRNTGESMRIVLKPSS
SEMDRQERQNYILTAPMDDVFEFKKPGFTLPKQARLFKTVICEVCGEGAPEHKMRLQE
GKKVCLDCFEDYSRGY"
misc_feature 453741..454247
/locus_tag="DSY0393"
/note="Formylmethanofuran dehydrogenase subunit E [Energy
production and conversion]; Region: COG2191"
/db_xref="CDD:225102"
misc_feature 453759..454088
/locus_tag="DSY0393"
/note="FmdE, Molybdenum formylmethanofuran dehydrogenase
operon; Region: FmdE; pfam02663"
/db_xref="CDD:217171"
misc_feature 454149..454244
/locus_tag="DSY0393"
/note="Prokaryotic dksA/traR C4-type zinc finger; Region:
zf-dskA_traR; pfam01258"
/db_xref="CDD:201690"
gene complement(454513..454794)
/locus_tag="DSY0394"
/db_xref="GeneID:3953748"
CDS complement(454513..454794)
/locus_tag="DSY0394"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516627.1"
/db_xref="GI:89893140"
/db_xref="GeneID:3953748"
/translation="MIFSSKRESICLSWNKISNFKRVLRSSNSLRRLPRLSNSGSGKM
TKSISLSPLLSPLAREPKRIILSTAYFCPMFWILSTSLLSKFTLTIPYT"
gene complement(455341..455607)
/locus_tag="DSY0395"
/db_xref="GeneID:3953749"
CDS complement(455341..455607)
/locus_tag="DSY0395"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516628.1"
/db_xref="GI:89893141"
/db_xref="GeneID:3953749"
/translation="MLIEKGLAKPLGCAIVKPEEGLPMDIAALSVVSNQVQLKQQASL
SVMKMVMNASQEQTNSLLAMTAGMSGEMESSVNPHLGSKLDVLV"
misc_feature complement(455344..455532)
/locus_tag="DSY0395"
/note="Putative motility protein; Region: YjfB_motility;
pfam14070"
/db_xref="CDD:206240"
gene complement(455652..456164)
/locus_tag="DSY0396"
/db_xref="GeneID:3953750"
CDS complement(455652..456164)
/locus_tag="DSY0396"
/note="similarity to COG0602 Organic radical activating
enzymes(Evalue: 8E-24)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516629.1"
/db_xref="GI:89893142"
/db_xref="GeneID:3953750"
/translation="MMDSCIRIAGIIGESIVDGPGIRLVVFAQGCPHHCPGCHNPETH
AYEGGKSVAIAEILQRLAMNPLLDGITLSGGEPFAQAAGFALLAQSARQRGFHVMTYS
GYTYEELTASSEQNPAWALLLEQTDLLVDGPFQLAERNLLLPFRGSENQRVIDVQESL
RQGKVVLASV"
misc_feature complement(455697..456146)
/locus_tag="DSY0396"
/note="anaerobic ribonucleoside-triphosphate reductase
activating protein; Region: NrdG; TIGR02491"
/db_xref="CDD:233893"
misc_feature complement(<455934..456092)
/locus_tag="DSY0396"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(455937..455942,455946..455948,
456048..456056,456060..456062,456066..456068,
456072..456074))
/locus_tag="DSY0396"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(456164..458533)
/locus_tag="DSY0397"
/db_xref="GeneID:3953751"
CDS complement(456164..458533)
/locus_tag="DSY0397"
/EC_number="1.17.4.2"
/note="Catalyzes the reduction of nucleoside
5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates"
/codon_start=1
/transl_table=11
/product="anaerobic ribonucleoside triphosphate reductase"
/protein_id="YP_516630.1"
/db_xref="GI:89893143"
/db_xref="GeneID:3953751"
/translation="MITKIRKRDGREAPFNIEKIANAIFKAASATGGKDYQSSLLLAE
EVVNYLEVNLHKKVPSVEEIQDAVEKILIERGHARTAQEFILYRAERTRVREMDTRLM
KVYEELTFKEAKDNDMKRENANIDGDTAMGTMLRYGSEGAKQFNEMFVLKPEHSKAHK
EGDIHIHDMDFLTLTTTCCQIDIIKLFKEGFGTGHGFLREPNDIQSYSALACIAIQSN
QNDQHGGQSIPNFDYGMAPGVAKTYIKLYRQNLLKACELLIHQDVDQEELEAHLKDVF
SALPNQGHTPTLSSDPDYFEQEAALLQTLPNLKLDMPTIRKAQEFAVKKALAETDKKT
YQAMEALVHNLNTMHSRAGAQIPFSSLNYGTDTTPEGRMVVKNLLLATEAGLGNGETP
IFPIHIFKVKEGVNYNPSDPNYDLFQLACRVSAKRLFPNFSFIDAPFNLQYYVPGRPE
TEIAYMGCRTRVIGNIYDPSRETIFGRGNLSFTTINLPRLAIKSHQSRTEFFAMLDEK
IDLVINQLLERFEIQARKKVKNFPFLMGQGIWLDSDQLGWDDEIREVLKHGTLSMGFI
GLAECLMVLTGQHHGESEEARELGLEIVQQLRRRMDEAGREYGLNFSLLATPAEGLSG
RFIKMDRELFGSIPGITDKEYYTNSFHIPVSFPISAFRKITIEAPYHELTNAGHITYV
EVDGDPTQNLEAFEKIVRCMKESGIGFGAVNHPVDRDPVCGYTGIIGNECPRCGREES
TAPFERIRRITGYLVGTLDRFNDAKKAEVRDRIKHLNCLDSSFGEKGTL"
misc_feature complement(456206..458533)
/locus_tag="DSY0397"
/note="anaerobic ribonucleoside triphosphate reductase;
Provisional; Region: PRK07111"
/db_xref="CDD:235937"
misc_feature complement(458255..458524)
/locus_tag="DSY0397"
/note="ATP cone domain; Region: ATP-cone; pfam03477"
/db_xref="CDD:217585"
misc_feature complement(<457751..458173)
/locus_tag="DSY0397"
/note="Ribonucleotide reductase and Pyruvate formate
lyase; Region: RNR_PFL; cl09939"
/db_xref="CDD:245211"
misc_feature complement(456266..457627)
/locus_tag="DSY0397"
/note="Class III ribonucleotide reductase; Region:
RNR_III; cd01675"
/db_xref="CDD:153084"
misc_feature complement(order(456674..456676,456683..456685,
457091..457093,457160..457165,457460..457462))
/locus_tag="DSY0397"
/note="active site"
/db_xref="CDD:153084"
misc_feature complement(order(456329..456331,456338..456340,
456368..456370,456377..456379))
/locus_tag="DSY0397"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:153084"
misc_feature complement(456275..456289)
/locus_tag="DSY0397"
/note="glycine loop; other site"
/db_xref="CDD:153084"
gene complement(459079..462306)
/gene="carB"
/locus_tag="DSY0398"
/db_xref="GeneID:3953752"
CDS complement(459079..462306)
/gene="carB"
/locus_tag="DSY0398"
/EC_number="6.3.5.5"
/note="four CarB-CarA dimers form the carbamoyl phosphate
synthetase holoenzyme that catalyzes the production of
carbamoyl phosphate; CarB is responsible for the
amidotransferase activity"
/codon_start=1
/transl_table=11
/product="carbamoyl phosphate synthase large subunit"
/protein_id="YP_516631.1"
/db_xref="GI:89893144"
/db_xref="GeneID:3953752"
/translation="MPKREDIKKIMIIGSGPIVIGQAAEFDYSGTQACKALKNLGYEV
VLVNSNPATIMTDAGTADATYIEPLNVQRITEIIEKERPDALLPNLGGQSGLNLSSEL
AKAGVLDHYGVKVIGVQLDAIERGEDRIAFKETMERLGIDMPKSSPAYTVEEAEKIAQ
ELGYPVVIRPAYTLGGTGGGLVYNVEELKTIVNRGISASMIGQVLVEESVLGWEELEL
EVVRDSKNQMITVCFIENIDAIGVHTGDSFCSAPMLTISQELQERLQKYAYSIVEAIE
VIGGTNVQFAHDPKTDRVVIIEINPRTSRSSALASKATGFPIALISSLLAAGLTLDEI
PYWREGTLDKYTPWGDYVVIKFARWAFEKFKGVEDKLGTQMRAVGEVMSIGKNYKEAF
QKAIRSLEIGRYGLGFAKDFNTKTLPELLELLKTPTSERHFMMYEALRQGADPAELAA
ITYVKTWFIEQMKELVDLEEKILEYQGRELPAELLIQAKKDGFADRYLAQLLGISETQ
VRRQRLGLGLTQAWDAVPVSGVNNASYYYSTYNAPDKVTTSQREKVLILGGGPNRIGQ
GIEFDYCCVHAAFALKNLGYETIMINCNPETVSTDYDTSDKLYFEPLTVEDVLSIYEK
ERPIGAIVQFGGQTPLNIAAQLQEAGVRILGTVPEVIDQAEDRDQFRKMMEKLAIPMP
QAGMASTLEEALAAAEMIGYPVMVRPSYVLGGRGMEIVFDEEQLREYVAAAVDITPER
PILIDKFLENAIEAEADAVSDGTHAFVPAVMEHIELAGIHSGDSACVIPPLTIADRHL
RTIIDYTQRIAQELHVVGLMNIQYAIAEDKVYVLEANPRASRTVPLVSKICNTPMARL
ATELILADYTGQKNDIATNFKPAQISHYGVKEAVFPFDKFPEVDPVLGPEMRSTGEVL
GMANSFGLAYFKAQEATHSSLPFSGTVLMSIAEQDRSSGVIEIAQEFLKLGFKIKATQ
GTRKFLQDHSIDAEFIHKIEEGRPNITDGIMNGEIQLVINTPIGKRSLKDDSYIRKTA
IKYKIPYITTTPAALASAKGIAASQEAAANKTVVKSLQEYHGEIM"
misc_feature complement(459094..462306)
/gene="carB"
/locus_tag="DSY0398"
/note="carbamoyl phosphate synthase large subunit;
Reviewed; Region: carB; PRK05294"
/db_xref="CDD:235393"
misc_feature complement(461956..462288)
/gene="carB"
/locus_tag="DSY0398"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(461305..461925)
/gene="carB"
/locus_tag="DSY0398"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl17255"
/db_xref="CDD:247809"
misc_feature complement(<460750..461022)
/gene="carB"
/locus_tag="DSY0398"
/note="Carbamoyl-phosphate synthetase large chain,
oligomerisation domain; Region: CPSase_L_D3; pfam02787"
/db_xref="CDD:217231"
misc_feature complement(460327..460653)
/gene="carB"
/locus_tag="DSY0398"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(459736..460311)
/gene="carB"
/locus_tag="DSY0398"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl17255"
/db_xref="CDD:247809"
misc_feature complement(459187..459492)
/gene="carB"
/locus_tag="DSY0398"
/note="Methylglyoxal synthase-like domain from type II
glutamine-dependent carbamoyl phosphate synthetase (CSP).
CSP, a CarA and CarB heterodimer, catalyzes the production
of carbamoyl phosphate which is subsequently employed in
the metabolic pathways...; Region: MGS_CPS_II; cd01424"
/db_xref="CDD:238712"
misc_feature complement(order(459265..459273,459337..459339,
459385..459390,459394..459396,459457..459459,
459475..459477))
/gene="carB"
/locus_tag="DSY0398"
/note="IMP binding site; other site"
/db_xref="CDD:238712"
misc_feature complement(order(459304..459306,459340..459342,
459346..459351,459355..459357,459379..459381,
459391..459393))
/gene="carB"
/locus_tag="DSY0398"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238712"
misc_feature complement(459190..459198)
/gene="carB"
/locus_tag="DSY0398"
/note="partial ornithine binding site; other site"
/db_xref="CDD:238712"
gene complement(462549..463466)
/locus_tag="DSY0399"
/db_xref="GeneID:3953753"
CDS complement(462549..463466)
/locus_tag="DSY0399"
/note="similarity to COG0583 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516632.1"
/db_xref="GI:89893145"
/db_xref="GeneID:3953753"
/translation="MMNLEQSTYLVEVDKYKSITKAANNLFVSQSTISMSIAHLEKEL
NIIIFKRSKTGVTATANGKKIITYAQNILNELKNMNEYAINCSNNLASTIKITSAPTF
CNSILIDIVTELLTTTPEIHIDLKENNNEHIIQNIYNGEIDIGIIGHLCDSKDRILNN
LDKKSISYEEFYCGNVNLYLNKNHPLLYKNSITLQDLSNYPLVSHQYLLKHWTNPLQL
KNLASEFYNYESIKIIIQNSNLIAIMPDIIEINDYSINAGLIVRLSEVELNTKVCYGC
IRSLKNDILPAEKKIIDLLKSKCDQIYIP"
misc_feature complement(462564..463463)
/locus_tag="DSY0399"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(463278..463457)
/locus_tag="DSY0399"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(462582..463190)
/locus_tag="DSY0399"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature complement(order(462756..462761,462765..462770,
462786..462803,463086..463106,463110..463112,
463122..463124,463131..463136,463140..463145))
/locus_tag="DSY0399"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 463822..465330
/locus_tag="DSY0400"
/db_xref="GeneID:3953754"
CDS 463822..465330
/locus_tag="DSY0400"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516633.1"
/db_xref="GI:89893146"
/db_xref="GeneID:3953754"
/translation="MPYPTIYPTGTTIYKPEKCFNGFTIYPANGQGAMLIDMNGREVN
LWKDLEGMPNKILPGGFVMGSRGIRSPRHMTKEYIDVVQVDWDGNIVWKFDKHEYIED
PGEQPRWMARQKADYQRQGNPVGYYVPGMDPLTDQGNTLILCHKNVMKRKISYIPLID
DAIIEVDWQGNIIWEWVCSDHFDEYGFSEAAKNVLARDPNLRTSGINGMGDWMHINSM
SVLGPNQWYDAGDERFHPDNIIWDARQSNITAIIDKKTGKVVWRLGPDYDTPEMKKLG
WIIGQHHAHMIPKGLPGEGNIMIFDNGGLAGYGLPNPSAPTGFNNCRRDYSRVIEFNP
VTLEIEWQYGPHEAGFIVPLNSSRFYSPFISSAQRLPNGNTLITEGGGGRLFEVTHDH
EIVWEYISPYYGNGVYRGMSKYNGYKFNAVYRAYRVPYTYCPQAGVPEEVKIDPIDNE
DFRVPGAAPRGAVKVTVIEGTVDMSTTESDNFCLATDEQKEEVVKLVKREEK"
misc_feature <464224..465006
/locus_tag="DSY0400"
/note="Arylsulfotransferase (ASST); Region:
Arylsulfotrans; pfam05935"
/db_xref="CDD:218815"
gene 465542..467032
/locus_tag="DSY0401"
/db_xref="GeneID:3953755"
CDS 465542..467032
/locus_tag="DSY0401"
/note="similarity to COG0471 Di- and tricarboxylate
transporters"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516634.1"
/db_xref="GI:89893147"
/db_xref="GeneID:3953755"
/translation="MAAELQIKRKPIFSQSTKYYFHSAIAILLMFTFRFIPPFNPMIT
ETGMNALGIFLGVLYGWSFVGMIWPSLLGMIACGFTGIMTLQESFAMGFGSDLAVITI
FVFMFAAFMEESGLNSYIANWFISRKIVVGKPYAFLAAMMLSGFVLSCFTQIFAAIVI
VWSIFYNVAKEMGLQRREGFVNCTMFGILYSASLGAIVFPFSSFAIIALGLMKKATGL
TVNFLTFSLFNLLACSIIMLLYWLACKYLFRPDTQKLLSTEDRFAYMRGVKMNKKQKS
AAVGLGIFLTMLFLPGIFPNSSFIINQLKSLGVVGSVLLVMIAFMILRKDGSEGTEGI
LNFGDIARKGINWQVLVLLASTFPISSALESEQSGVLKAAEAFISSSISDLNPFLAMA
FLAILVACLTQFTHNAVLLIIFIPMLCPIVISHGINPIVLVVTLLYASKSALITPAAS
TQAAMIFANTEWVEIKELFKLAVVGATIMAVVAVAIIPLANISSVA"
misc_feature 465611..466912
/locus_tag="DSY0401"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:223547"
misc_feature 465689..466912
/locus_tag="DSY0401"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl17221"
/db_xref="CDD:247775"
misc_feature order(465707..465718,465737..465778,465824..465877,
465953..466003,466007..466060,466070..466072,
466088..466156,466217..466261,466274..466285,
466370..466396,466418..466444,466493..466510,
466574..466630,466709..466756,466808..466867)
/locus_tag="DSY0401"
/note="transmembrane helices; other site"
/db_xref="CDD:238344"
gene 467195..468439
/locus_tag="DSY0402"
/db_xref="GeneID:3953756"
CDS 467195..468439
/locus_tag="DSY0402"
/note="similarity to COG3385 Predicted transposase(Evalue:
1E-61)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516635.1"
/db_xref="GI:89893148"
/db_xref="GeneID:3953756"
/translation="MQDKDTTQSTFMQAFQPFFSKDLWETIHREVPGLDLRSQKLTTN
QLTLLISHAQLQEYRALRKISTSVHHDSLGQAIGLESISHSQISRRLKTLPTQVPEML
FKGTLHNVAQKQGYGKIRQQLGKLYMIDASTMSLCLSRYPWAVFRKSKAGVKMHLRLS
FDAMAVPDEVLVTPAKTADRKKLDELIVQDQEALNIFDRGYVDYKLFDDYCEKGIRFV
TRLKNNAVIEFTGVERPVKEDGLIEEDVDVILGAGSRKMKHTLREVTIDDNVHEPFTI
LTNDFNLSAEELGEIYRYRWQIELFFKWLKQHAQIKHFYGTSETAVINQILLALMMYC
LLVLLKLEAGYPRDLLTLQRLLIACLFERYEEFLEKLRRRRRKGSKRIRYEEIYRMTE
HSILKEEETQWLDDLTYDPVIL"
misc_feature 467579..468172
/locus_tag="DSY0402"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
misc_feature <467708..>467866
/locus_tag="DSY0402"
/note="Transposase DDE domain; Region: DDE_Tnp_1_3;
pfam13612"
/db_xref="CDD:205790"
misc_feature <467780..468172
/locus_tag="DSY0402"
/note="FOG: Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3385"
/db_xref="CDD:225920"
gene 468669..468995
/locus_tag="DSY0403"
/db_xref="GeneID:3953757"
CDS 468669..468995
/locus_tag="DSY0403"
/note="similarity to COG0526 Thiol-disulfide isomerase and
thioredoxins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516636.1"
/db_xref="GI:89893149"
/db_xref="GeneID:3953757"
/translation="MLLQKLNASQFEEIIYTDGNPSLVIFSRKSCHVCKEVMPVLEDL
QSKYEGKFGFYYVDVEENKAVFQRFSLKGVPQILFFNFGEYQGKLSGKVEDEQIEEKI
SQVLKA"
misc_feature 468693..468974
/locus_tag="DSY0403"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:239245"
misc_feature order(468759..468761,468768..468770)
/locus_tag="DSY0403"
/note="catalytic residues [active]"
/db_xref="CDD:239245"
gene complement(469062..469781)
/locus_tag="DSY0404"
/db_xref="GeneID:3953758"
CDS complement(469062..469781)
/locus_tag="DSY0404"
/note="similarity to COG0730 Predicted permeases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516637.1"
/db_xref="GI:89893150"
/db_xref="GeneID:3953758"
/translation="MNTYALILIVLIASTMQAATGFGFAIMSIPFLLLLLDPRDAIQL
NILLAFIISLMMIYKIRHTVKAATLKRLIMGSLLGTLPGILIFIFLDVRPLKLLISVL
LLISTCLLAAKIRFKESNTKEFLMGVCSGFLTTSIGMPGPPLMIYYAGTDLDKATIRS
TTVAYFVFINLLSILMQTFLYGSSAIVWKSTLISLPFLVLGIVLGQFVFVRLNQQRMQ
QLIYLLLFFTSIYLFVTTIAQ"
misc_feature complement(469086..469766)
/locus_tag="DSY0404"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:216790"
gene complement(469979..470593)
/locus_tag="DSY0405"
/db_xref="GeneID:3953759"
CDS complement(469979..470593)
/locus_tag="DSY0405"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516638.1"
/db_xref="GI:89893151"
/db_xref="GeneID:3953759"
/translation="MEQIRPLPKINQIPVAISNRHVHLSQEDAQTLFGPNYSFKIKKD
LSQPGQYACEERVTLVGPKGVIENVRILGPVRPQTQVELSVSDGIKLGITPPVRDSGD
LANSAGITLVGPSGSLTLPEGVIAAARHIHMHSTDAERLGVKDRDRVSVTAPGPRGLV
FRETLIRVSHNFTLEMHIDIDEANAASLRNQDYVELLLVNHLPP"
misc_feature complement(470003..470572)
/locus_tag="DSY0405"
/note="propanediol utilization phosphotransacylase;
Provisional; Region: PRK15070"
/db_xref="CDD:237899"
misc_feature complement(470312..470557)
/locus_tag="DSY0405"
/note="Propanediol utilisation protein PduL; Region: PduL;
pfam06130"
/db_xref="CDD:218906"
misc_feature complement(470027..470233)
/locus_tag="DSY0405"
/note="Propanediol utilisation protein PduL; Region: PduL;
pfam06130"
/db_xref="CDD:218906"
gene complement(470665..472152)
/locus_tag="DSY0406"
/db_xref="GeneID:3953760"
CDS complement(470665..472152)
/locus_tag="DSY0406"
/note="similarity to COG1012 NAD-dependent aldehyde
dehydrogenases(Evalue: 1E-102)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516639.1"
/db_xref="GI:89893152"
/db_xref="GeneID:3953760"
/translation="MVFDTDLASIQESRNLVQKAKEAQLHLAHFNEQQIDKILASIVA
AVEENAEGLARMACQETEYGIVEHKIAKNLFAARDVYESTKHIKTIGTISEDPDRKVI
RYAVPMGVLVGITPRTNPTSTIIHNALCAIKGANAIVFSPHPFAVQCGCATASLINEA
AVKAGAPDGVCSCLSMTSLQASHELMHHPDVAAIIATGGPGLVKSAYSAGKPAFGVGS
GNVPVFIERSADIKQAVNDIMVSKTFDNGMICASEQSILADQPIKDEVIKELQNQGAY
FLSPEEVQKVGRVVIHANGSMNNALVGQSPAVIAQRAGISIPADTALLIAPMDGYGKD
YPLSHEKLTTVLSFYVVQDWKEACHLSIELLKLGGIGHSCAIHSQNEQVIREFLAKPV
FRIIVNTPSALGGIGQTTGIMPSLTLGCGTWGGSSISENLGPQHLINIKHLTYGLKKV
AFHKVPAAQGNVSPLLPPTKATSWDIKSDDIADVVKQVLQQLKIG"
misc_feature complement(470830..472134)
/locus_tag="DSY0406"
/note="NAD-dependent aldehyde dehydrogenases [Energy
production and conversion]; Region: PutA; COG1012"
/db_xref="CDD:223944"
misc_feature complement(470815..472113)
/locus_tag="DSY0406"
/note="Coenzyme A acylating aldehyde dehydrogenase (ACDH),
ALDH family 20-like; Region: ALDH_F20_ACDH; cd07122"
/db_xref="CDD:143440"
misc_feature complement(471403..471405)
/locus_tag="DSY0406"
/note="putative catalytic cysteine [active]"
/db_xref="CDD:143440"
gene complement(472172..472462)
/locus_tag="DSY0407"
/db_xref="GeneID:3953761"
CDS complement(472172..472462)
/locus_tag="DSY0407"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516640.1"
/db_xref="GI:89893153"
/db_xref="GeneID:3953761"
/translation="MQQDALGMVETKGLVGAIEAADAMVKAANVHLIGKVLVGGGLVT
VMVRGDVGAVKAATDAGAAAAQRVGELKSVHVIPRPHTEVEMILPHDDSGKA"
misc_feature complement(<472196..472456)
/locus_tag="DSY0407"
/note="Carbon dioxide concentrating mechanism/carboxysome
shell protein [Secondary metabolites biosynthesis,
transport, and catabolism / Energy production and
conversion]; Region: CcmK; COG4577"
/db_xref="CDD:226943"
misc_feature complement(472196..472450)
/locus_tag="DSY0407"
/note="1,2-propanediol utilization protein A (PduA),
Bacterial Micro-Compartment (BMC) domain; Region:
BMC_PduA; cd07059"
/db_xref="CDD:132899"
misc_feature complement(order(472214..472216,472223..472228,
472232..472234,472238..472246,472337..472345,
472352..472354,472367..472369,472385..472390,
472397..472399,472424..472426,472433..472435))
/locus_tag="DSY0407"
/note="Hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:132899"
misc_feature complement(472352..472354)
/locus_tag="DSY0407"
/note="Putative hexagonal pore residue; other site"
/db_xref="CDD:132899"
gene complement(472491..472769)
/locus_tag="DSY0408"
/db_xref="GeneID:3953762"
CDS complement(472491..472769)
/locus_tag="DSY0408"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516641.1"
/db_xref="GI:89893154"
/db_xref="GeneID:3953762"
/translation="MQQEALGMIETKGLIGAIEAADAMVKAANVHLIGNVLVGGGLVA
VMVRGDVGAVKAATDAGAAAAQRVGELISVHVIPRPHGEVEMILPKAK"
misc_feature complement(<472500..472763)
/locus_tag="DSY0408"
/note="Carbon dioxide concentrating mechanism/carboxysome
shell protein [Secondary metabolites biosynthesis,
transport, and catabolism / Energy production and
conversion]; Region: CcmK; COG4577"
/db_xref="CDD:226943"
misc_feature complement(472503..472757)
/locus_tag="DSY0408"
/note="1,2-propanediol utilization protein A (PduA),
Bacterial Micro-Compartment (BMC) domain; Region:
BMC_PduA; cd07059"
/db_xref="CDD:132899"
misc_feature complement(order(472521..472523,472530..472535,
472539..472541,472545..472553,472644..472652,
472659..472661,472674..472676,472692..472697,
472704..472706,472731..472733,472740..472742))
/locus_tag="DSY0408"
/note="Hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:132899"
misc_feature complement(472659..472661)
/locus_tag="DSY0408"
/note="Putative hexagonal pore residue; other site"
/db_xref="CDD:132899"
gene complement(472826..473476)
/locus_tag="DSY0409"
/db_xref="GeneID:3953763"
CDS complement(472826..473476)
/locus_tag="DSY0409"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516642.1"
/db_xref="GI:89893155"
/db_xref="GeneID:3953763"
/translation="MKALITAADVKTAAETPEKILTISEADLITPAARDAAKELGVQI
TAHPVSLPPTVAPPAAAPPSTISPSPAFSPTSPLDPALVSRIIEEVMVCLNRSGSPAH
PQKEADPGGLRIVKGNSLILEDFSTGNPRDRIKIKELFNKKECPLYSAGIMALDKTSY
SLTPARDELNYIIEGTLECCIDNRCYTAQAGDTLYIPAQAKITLTAPDKVKLFYVC"
misc_feature complement(472832..473476)
/locus_tag="DSY0409"
/note="ethanolamine utilization protein EutQ; Provisional;
Region: PRK15457"
/db_xref="CDD:185354"
gene complement(473525..474052)
/locus_tag="DSY0410"
/db_xref="GeneID:3953764"
CDS complement(473525..474052)
/locus_tag="DSY0410"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516643.1"
/db_xref="GI:89893156"
/db_xref="GeneID:3953764"
/translation="MEVNSIARGIEAADAMLKAAQVDLLEAKPVCPGKYIVLICGDVA
AVQSSVAAGKTMAAHSVLDDFILPNVHPQVLTAISAATPLTLIKALGIIETFSIASLM
VAADTAAKTGQVDLVEIRIGMGIGGKSFVTLTGDVASVESSVAAGVMLASERGMLVDK
VVIPSPHDHLKRCLR"
misc_feature complement(473531..474052)
/locus_tag="DSY0410"
/note="PduT-like ethanolamine utilization protein; Region:
eut_PduT; TIGR02526"
/db_xref="CDD:131578"
misc_feature complement(473837..474049)
/locus_tag="DSY0410"
/note="1,2-propanediol utilization protein T (PduT),
Bacterial Micro-Compartment (BMC) domain repeat 1; Region:
BMC_PduT_repeat1; cd07053"
/db_xref="CDD:132893"
misc_feature complement(order(473951..473953,473966..473968,
473981..473983,473999..474004,474011..474013,
474038..474040,474047..474049))
/locus_tag="DSY0410"
/note="putative hexamer interface [polypeptide binding];
other site"
/db_xref="CDD:132893"
misc_feature complement(473966..473968)
/locus_tag="DSY0410"
/note="putative hexagonal pore; other site"
/db_xref="CDD:132893"
misc_feature complement(473555..473788)
/locus_tag="DSY0410"
/note="1,2-propanediol utilization protein T (PduT),
Bacterial Micro-Compartment (BMC) domain repeat 2; Region:
BMC_PduT_repeat2; cd07054"
/db_xref="CDD:132894"
misc_feature complement(order(473669..473671,473690..473692,
473705..473707,473723..473728,473735..473737,
473762..473764,473771..473773))
/locus_tag="DSY0410"
/note="putative hexamer interface [polypeptide binding];
other site"
/db_xref="CDD:132894"
misc_feature complement(473690..473692)
/locus_tag="DSY0410"
/note="putative hexagonal pore; other site"
/db_xref="CDD:132894"
gene complement(474052..475443)
/locus_tag="DSY0411"
/db_xref="GeneID:3953765"
CDS complement(474052..475443)
/locus_tag="DSY0411"
/note="similarity to COG1726 Na+-transporting
NADH:ubiquinone oxidoreductase alpha subunit(Evalue:
1E-45)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516644.1"
/db_xref="GI:89893157"
/db_xref="GeneID:3953765"
/translation="MRRKINWPRCPSMREELIQKIKKAGVVGAGGAGFPTHVKVNSKA
RTVLVNGAECEPLLRVDQQLMAGQAPKVVMGLELVMSVTGAKEGIISLKHKYHDAISA
LEKEISGKPIRIHILDDFYPAGDEHVTVYESTGRLVPQGSIPLKVDCVVHNVETLLNI
VDAVADQPVTDTYLTITGEVNQPLTLRLPIGTSISEALAIAGYHDSEGMQVIEGGPMM
GKIVADLHQPITKTTKGLIVLPREHPLLRLKTLPADKVLRQSRASCVQCRFCTDLCPR
YLLGHRLEPHKIMRMVNYGQGQEETMKMAFACSECGVCEQYACIMGLSPRAVNALLKK
ELTRLGIKPSPSPADQAVDPLQPHRKIPVKRLISRLALQDYDRNAPLQEKDYPIDRVA
IKLCQHVGAPSVPIVKAGQRVKKGDPIASPPAKGLGSYLHASIDGVVQEITDSILISA
REGSETQPWNPSV"
misc_feature complement(474964..475383)
/locus_tag="DSY0411"
/note="Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Region: Complex1_51K; pfam01512"
/db_xref="CDD:216542"
misc_feature complement(474787..474927)
/locus_tag="DSY0411"
/note="SLBB domain; Region: SLBB; pfam10531"
/db_xref="CDD:220798"
misc_feature complement(474472..474654)
/locus_tag="DSY0411"
/note="4Fe-4S dicluster domain; Region: Fer4_17;
pfam13534"
/db_xref="CDD:222205"
misc_feature complement(474112..474294)
/locus_tag="DSY0411"
/note="RnfC Barrel sandwich hybrid domain; Region: RnfC_N;
pfam13375"
/db_xref="CDD:222084"
gene complement(475400..475690)
/locus_tag="DSY0412"
/db_xref="GeneID:3956008"
CDS complement(475400..475690)
/locus_tag="DSY0412"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516645.1"
/db_xref="GI:89893158"
/db_xref="GeneID:3956008"
/translation="MRIGRVINSIWATRKADSLIGTKLMIVQLLDRPHGELGPIIVAA
DIIGAGIGEKVLVTEGSSARNMDNFNDSPIDSTIVGIIDEEKDKLAEVSKHA"
misc_feature complement(475442..475690)
/locus_tag="DSY0412"
/note="Ethanolamine utilisation protein and carboxysome
structural protein domain family; Region: EutN_CcmL;
cd01614"
/db_xref="CDD:133473"
misc_feature complement(order(475442..475444,475448..475450,
475454..475456,475463..475471,475499..475501,
475517..475519,475550..475552,475565..475567,
475649..475660,475664..475672,475682..475684,
475688..475690))
/locus_tag="DSY0412"
/note="Hexamer/Pentamer interface [polypeptide binding];
other site"
/db_xref="CDD:133473"
misc_feature complement(order(475466..475468,475481..475483,
475499..475501,475571..475573,475598..475600,
475607..475609,475685..475687))
/locus_tag="DSY0412"
/note="central pore; other site"
/db_xref="CDD:133473"
gene complement(475741..476571)
/locus_tag="DSY0413"
/db_xref="GeneID:3956009"
CDS complement(475741..476571)
/locus_tag="DSY0413"
/note="similarity to COG1077 HSP70 class molecular
chaperones involved in cell morphogenesis"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516646.1"
/db_xref="GI:89893159"
/db_xref="GeneID:3956009"
/translation="MEKANQRIAAFQETMDHPRPYQGQKRLYTGVDLGTAYTVLAVVD
EEGTPVAGAMGFAQVVRDGLVVDYIGAVDILRELKATLEESLGVELLKAGVAYPPGTS
PGDQKALHYIAEAVGFDVIAALDEPTAANNVLNIEDGAVIDIGGGTTGTAVIGQGQVV
CVADEPTGGTHVSLVIAGAYRLPFAEAEKLKMDSRKHQELLPVIKPVIEKIAGIIRGH
IQDHPVDRVYLVGGTSCFTGFETIVAAELQRPVIKPANPFLVTPLGIALAAAKTCSNP
"
misc_feature complement(475765..476568)
/locus_tag="DSY0413"
/note="ethanolamine utilization protein EutJ; Provisional;
Region: PRK15080"
/db_xref="CDD:237904"
misc_feature complement(<476236..476484)
/locus_tag="DSY0413"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature complement(order(476455..476457,476461..476463,
476467..476478))
/locus_tag="DSY0413"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
misc_feature complement(475762..>475965)
/locus_tag="DSY0413"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:247684"
gene complement(476637..477575)
/locus_tag="DSY0414"
/db_xref="GeneID:3956010"
CDS complement(476637..477575)
/locus_tag="DSY0414"
/note="similarity to COG2159 Predicted metal-dependent
hydrolase of the TIM-barrel fold(Evalue: 8E-31)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516647.1"
/db_xref="GI:89893160"
/db_xref="GeneID:3956010"
/translation="MNIIDFRFRPNTEAILKGISSNPAFKGMCQSIDFNKMLPQTLEE
VVEELDRHHVVKAVISGRDCETTYGAQSNNPSVIEFCHKFPDKFIGFAGLDPHKGMAA
LAEITHAVHEEGIKGAAIDPYLARIYVNDAKYYPIYAKCCELGIPLIIATGPGTLVPN
AVIDHVAPRYIDFVARDFPELKIIASHGGYPWVNEMITVAQRNANVYLELSEYEFFPQ
SSAYIEAANSILSDKIMYASAHPFVDFKLALKNYEQLPLKPEVREKVMYKNAAKVLGL
SDGTFSASKAMDAQEVQMIIENVIAQLSQRGLLADR"
misc_feature complement(476745..>477356)
/locus_tag="DSY0414"
/note="Predicted metal-dependent hydrolase of the
TIM-barrel fold [General function prediction only];
Region: COG2159"
/db_xref="CDD:225070"
gene 477879..479273
/locus_tag="DSY0415"
/db_xref="GeneID:3956011"
CDS 477879..479273
/locus_tag="DSY0415"
/note="similarity to COG3829 Transcriptional regulator
containing PAS, AAA-type ATPase, and DNA-binding
domains(Evalue: 2E-91)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516648.1"
/db_xref="GI:89893161"
/db_xref="GeneID:3956011"
/translation="MTQDHWNKFATSQVYQQVIELLPEGVYISDAEGTTIAVNSMYEQ
LTGLKGQEVMGENVKVLVEKGVYNLALNPEIVVTGEHKMSVQITKTGRKVLLNGYPIF
DDSGKVSFVLTFVRDISLLSQLKEQIADQQEIIDKYREANEQCKKALTSNVEIFESKK
MIALMEKLKKIAKTDTTVLLLGETGVGKDVLARKIHQYSPRRKEPFLKIDCSTIPENL
IESELFGYEQGAFSGANTKGKVGLFEMADKGTLFLDEIGEIPLQLQVKLLRVLQDQEI
IHIGSTKVKKVNVRFIAATNRDLEEEVRKGTFRSDLYYRLRVADLEIPPLRERQEDIR
VMMQAFLDKYNAKFRKEISFTKELAEVLLAYKWPGNVRQMDNLIQSLVVTHETESVDV
TDLPHYMLLDLSKPEEAGNPSQGKSLDELVADYERNLLKKALDRYKSSSKVAEFFQVD
RSTIFRKAKKYKLL"
misc_feature 477942..478232
/locus_tag="DSY0415"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature 477954..478235
/locus_tag="DSY0415"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:222120"
misc_feature order(477990..477992,478002..478004,478020..478022,
478059..478070,478125..478127,478149..478151)
/locus_tag="DSY0415"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(478050..478052,478062..478064,478074..478079,
478164..478166,478170..478172)
/locus_tag="DSY0415"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature 478341..479210
/locus_tag="DSY0415"
/note="psp operon transcriptional activator PspF; Region:
phageshock_pspF; TIGR02974"
/db_xref="CDD:234077"
misc_feature 478359..478829
/locus_tag="DSY0415"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 478422..478445
/locus_tag="DSY0415"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(478425..478448,478638..478640,478764..478766)
/locus_tag="DSY0415"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 478626..478643
/locus_tag="DSY0415"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 478821..478823
/locus_tag="DSY0415"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 479594..482071
/locus_tag="DSY0416"
/db_xref="GeneID:3956012"
CDS 479594..482071
/locus_tag="DSY0416"
/EC_number="2.3.1.54"
/note="similarity to COG1882 Pyruvate-formate
lyase(Evalue: 1E-112)"
/codon_start=1
/transl_table=11
/product="pyruvate-formate lyase"
/protein_id="YP_516649.1"
/db_xref="GI:89893162"
/db_xref="GeneID:3956012"
/translation="MSTCCLSPHEERIIDPQKGKVNYEGRERVFKILESFQDLRPKID
VERAKYFTESFKATEGQPLQPRWAKALMHIAQNITVYIDDQQLIVGRAGAQGRYGIVF
PELDGDFLGLAIEQLPQRVESPFNIDPDDAQIIINDVAPYWKGKTFHEELAKALPEDT
LKVTYDPADPLASRFIVNETASFRSSIQWVHDYEKVLKRGFKGIKEEAQAKLDQLDPL
SPADNMEKRPFLEAVIITCDAIVVWANRHAHLAAQMAKLEKDPQRKQELSDIAERCAW
VPEHPARNFREAVQSQWFVQMFSRIEQKTGTIISNGRMDQYFYPYYQKDVAEGILTPQ
QAIELLECMWVGMAQFIDLYLSPTGGAFNEGYAHWEAVTVGGQTPDGVDATNELTYLF
LESKQKFPLNYPDLAARIHSRSPERYLYEVAETVKEGTGFPKLINDEEVVPLLLSKGA
KFAEALDYAVSGCAECRMPNRDTYTSGNPYINFAAAIEMTLYNGRMLKYGDEQLGLET
GDPTQFETWDEFWKAYLAQQTNFLKHAFIQQHIIIRLRAQHFASPLGSLMHDLCMENC
LDLHQPVIKGGIDLGYFELIGYGTVVDSLAAIKKLVYEEKKLTMAELLEAVRNNFEGH
EVIREMVMHTPKYGNNDPYSDVIAKEVDRTAVEFTKKYSRELGVHLDLRLVPFTSHVP
FGKVVSATPNGRKAWMPLADGSSASHGADVNGPTAVLLSNFFSKNYGYRNRAARLLNI
KLSPSCVAGEEGSEKLVSFIRTWCDLKLWHIQFNIVNRETLLAAKQDPDKYRGLIVRV
AGYSAYFVDLSSDLQDDIIARTEHEML"
misc_feature 479672..482065
/locus_tag="DSY0416"
/note="glycyl radical enzyme, PFL2/glycerol dehydratase
family; Region: PFL2-3; TIGR01774"
/db_xref="CDD:233568"
misc_feature 479672..482056
/locus_tag="DSY0416"
/note="Pyruvate formate lyase 2 and related enzymes;
Region: PFL2_DhaB_BssA; cd01677"
/db_xref="CDD:153086"
misc_feature order(479768..479779,480023..480031,480041..480046,
480053..480064,480263..480268,480272..480277,
481211..481213,481223..481225,481238..481240,
481574..481582,481586..481588)
/locus_tag="DSY0416"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153086"
misc_feature order(480155..480157,480512..480517,480680..480682,
480698..480700,480977..480982,480986..480988,
481022..481024,481616..481618,481622..481624)
/locus_tag="DSY0416"
/note="active site"
/db_xref="CDD:153086"
misc_feature 481982..481996
/locus_tag="DSY0416"
/note="glycine loop; other site"
/db_xref="CDD:153086"
gene 482133..483065
/locus_tag="DSY0417"
/db_xref="GeneID:3956013"
CDS 482133..483065
/locus_tag="DSY0417"
/EC_number="1.97.1.4"
/note="similarity to COG1180 Pyruvate-formate
lyase-activating enzyme(Evalue: 5E-60)"
/codon_start=1
/transl_table=11
/product="pyruvate-formate lyase-activating enzyme"
/protein_id="YP_516650.1"
/db_xref="GI:89893163"
/db_xref="GeneID:3956013"
/translation="MGESKVSERKTGIVFNIQHYSVHDGPGIRTIVFTKGCPLRCPWC
SNPESQRLQLQLGFNPNKCLGIKACFRCAEVCAYGAVKLNVEESDRILIDRKLCTDCL
QCVDVCPSQALQAFGKPITVEDVLKEVEKDSVFYARSGGGLTFSGGEPLMQGNFVAET
LKEARRRRLKTTIETCGYADWSTMERVCQHLTSLIMDIKCMDPEKHQEYTGASNELIL
DNFNKLCEHFPKLPKLIRTPVVPGFNDREEDIREIAEFVKDKPNVTYELLKYHRLGQQ
KYHFLGREYPWPDTQLEDVKFEKLKEVAKSIVNQ"
misc_feature 482172..483053
/locus_tag="DSY0417"
/note="glycyl-radical enzyme activating protein family;
Region: PFLE_PFLC; TIGR02494"
/db_xref="CDD:233895"
misc_feature 482403..482471
/locus_tag="DSY0417"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:243197"
gene 483087..484109
/locus_tag="DSY0418"
/db_xref="GeneID:3956014"
CDS 483087..484109
/locus_tag="DSY0418"
/note="similarity to COG1638 Dicarboxylate-binding
periplasmic protein(Evalue: 2E-39)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516651.1"
/db_xref="GI:89893164"
/db_xref="GeneID:3956014"
/translation="MKKGLLKVSVLILTCLLVFSLSGCSKTEKASADGKIVIRLGHPM
APGNNVTVGYEKFKEIVEQKSEGKIEIQIFGNTTLGSDRVTMESTQKGTLEMASCSSP
NMASFAREFMVFDLPYITAPEHQQKLYAALNEGELEQYLDNVCGKIGLKPIMYSEFGY
RNFVSTKKPITKAADLKGLKVRTTDSPVEVAVAEALGMSATPVAWGETYTALQQGTVD
AEGNTWGLLSDAKHGEILEYGIDSGHNYSMHLLMINKKYFEALPEDLQTILVESGKEA
LEWQRAVSNDMETEAKQKLIDSGVTLYDLTPAEKEELKTITRPVWDKFPEIPQELIDL
VTATQK"
misc_feature 483120..484106
/locus_tag="DSY0418"
/note="TRAP-type C4-dicarboxylate transport system,
periplasmic component [Carbohydrate transport and
metabolism]; Region: DctP; COG1638"
/db_xref="CDD:224553"
misc_feature 483204..484058
/locus_tag="DSY0418"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; pfam03480"
/db_xref="CDD:202660"
gene 484268..486142
/locus_tag="DSY0419"
/db_xref="GeneID:3956015"
CDS 484268..486142
/locus_tag="DSY0419"
/note="similarity to COG1593 Integral membrane protein,
possible transporter(Evalue: 1E-141)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516652.1"
/db_xref="GI:89893165"
/db_xref="GeneID:3956015"
/translation="MLDIAKKPENSWKKWLRWIDGNFEKPFLVIGMLAIIMLITYQTL
YRYIVSNITGGTAIVGLEELARFIFIWITYLAIPLAIKGRNNIRVDILYDRISDRWQK
ISWIMVDSCILVLTGVIFFMGIDHLQMMLNYPQTSPALNIPFFFPYLILPIGFGLMSI
RCIQDLVKQALEIGLKDTLIGVLVTAAIFSPLFLKPDVPAMAWLFGYFVLFIFIGVPI
AMALGLSALGTILCANTMPIEYISQISFTSIDSFPIMAIPFFVAAGVFMGEGGLSKRL
LGLADELLGSFTGGLALATVVTCMFFAAISGSGPATVAAIGSLTIPAMVERGYSRAFA
AALVAAAGSIGVMIPPSNPFVVYGVSAQVSIGKLFMGGIVPGLIIGLVLMGISYYYSK
KNGWKGEARKRTFRTVGKAFWEAKWALMVPVIILGGIYSGYMTPTESAAVAAFYGLIV
GVFIHRGINLKNIVYCFTESCSTSAVIIALMAMATIFGNILTIEQIPTKIATWMLAIT
DSKYVILLIITLLLLFVGTFMEALAAIVILTPILLPIVLQVGIDPIHFGIIMVVNLAI
GFITPPVGVNLFVASGLAKLKIEEISKAVVPFLLGMIAVLLLISYVPSISMFLTQFVK
"
misc_feature 484370..484768
/locus_tag="DSY0419"
/note="Tripartite ATP-independent periplasmic
transporters, DctQ component; Region: DctQ; pfam04290"
/db_xref="CDD:218009"
misc_feature 484880..486112
/locus_tag="DSY0419"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:219185"
misc_feature 485003..486133
/locus_tag="DSY0419"
/note="TRAP-type C4-dicarboxylate transport system, large
permease component [Carbohydrate transport and
metabolism]; Region: DctQ; COG1593"
/db_xref="CDD:224509"
gene 486352..487608
/locus_tag="DSY0420"
/db_xref="GeneID:3956016"
CDS 486352..487608
/locus_tag="DSY0420"
/note="similarity to COG0389 Nucleotidyltransferase/DNA
polymerase involved in DNA repair(Evalue: 1E-65)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516653.1"
/db_xref="GI:89893166"
/db_xref="GeneID:3956016"
/translation="MPEHKAKDCDIVLFDANSYYASCHQAVNPELQGKPLLVAGDPRN
RTGIILTASYEARFYGVKTAMPLFQALKLCPEAVVLSPDFRLYLDLSRKMWEIVERYT
DEDHIEVVSVDECFADFRGSHLLFGSTEEIARRVQKEILEELGLGVSVGVSYCKIFAK
LASDYQRDPKTRVKLPRSFTVIAPGELESKVWPLGVGELSGIGRQTEKQLADLGIRTI
GDLAQASPQALRKGFGVYGAKLYAWANGRDERPVTPEDQAKDHSIGRSITLPQDITDP
EQGAEVLLFLADSVGRKVRREDTKAQTLTVQVKDAEFKTRTYSTTLFEPTDSTDVIYR
ESLKLLAKWPQGKPIRLLGLTASRLQKGIEQLSLFQEESEEQTELDRTVDELRDKYGS
GILMRGTQYLSLSRKLAGRSTKDKRE"
misc_feature 486370..487593
/locus_tag="DSY0420"
/note="DNA polymerase IV; Reviewed; Region: PRK03103"
/db_xref="CDD:235104"
misc_feature 486394..487428
/locus_tag="DSY0420"
/note="DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa;
cd03586"
/db_xref="CDD:176459"
misc_feature order(486394..486399,486403..486411,486499..486504,
486511..486513,486520..486522,486688..486690,
486850..486852)
/locus_tag="DSY0420"
/note="active site"
/db_xref="CDD:176459"
misc_feature order(486469..486471,486547..486549,486682..486684,
486688..486693,486829..486831,486949..486969,
487054..487059,487126..487128,487135..487155,
487228..487230,487297..487308,487312..487314,
487399..487404,487414..487416,487423..487425)
/locus_tag="DSY0420"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176459"
gene complement(487676..488713)
/locus_tag="DSY0421"
/db_xref="GeneID:3956017"
CDS complement(487676..488713)
/locus_tag="DSY0421"
/note="similarity to COG2931 RTX toxins and related
Ca2+-binding proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516654.1"
/db_xref="GI:89893167"
/db_xref="GeneID:3956017"
/translation="MKIQSSAIVMAGESKHTESYKKEVTLQSWQNKDAAGKPVLNLEN
TDILDLSDSIKDRKSPAANVQQAQEISLEMSEGDKRKLELLQLMLEAITGKKLRFFVP
QKLVLNDSNRLPFSPTQAPTQGWGIVFESREQYIEQQSMSFSAQGQVTTADGKTIDLQ
LQLNISRSFAYQNNISFRAGDAVTIDPLAINLGVSSAQLTQQKYVFDLDYDGNTELIS
FLAPGSGFIALDKNGDGIINDGSELFGTRSGDGFADLALYDSDHNGWIDENDPIYDKL
RIWTKNEKGEDVLFALGEQSIGALYLGSAATDFSLKGDRNQSLGEIRRTGIYLNENGT
VGTLQHVDLTI"
gene 488899..489435
/locus_tag="DSY0422"
/db_xref="GeneID:3956018"
CDS 488899..489435
/locus_tag="DSY0422"
/note="similarity to COG0778 Nitroreductase(Evalue:
4E-23)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516655.1"
/db_xref="GI:89893168"
/db_xref="GeneID:3956018"
/translation="MSFLELAQKRRSLRSYLPDPVEQEKLEYVLECARLAPSWKNLQC
WRFIVVEDADLRQELTTAYAETNPGRKALLQAPLIVVLCGVPAESEVWEGKDYMMLDA
GLAMEHLILAAAEQGLGTCWQGLFAEDKVREILKVPENVRVLAMTPLGYPAEERKPRP
RKEMSQIVFKGTWGSGNA"
misc_feature 488905..489402
/locus_tag="DSY0422"
/note="Nitroreductase-like family 3. A subfamily of the
nitroreductase family containing uncharacterized proteins
that are similar to nitroreductase. Nitroreductase
catalyzes the reduction of nitroaromatic compounds such as
nitrotoluenes, nitrofurans and...; Region:
Nitroreductase_3; cd02139"
/db_xref="CDD:239054"
misc_feature order(488926..488928,488932..488934,488938..488940,
489016..489018,489268..489273)
/locus_tag="DSY0422"
/note="putative FMN binding site [chemical binding]; other
site"
/db_xref="CDD:239054"
gene 489484..490212
/locus_tag="DSY0423"
/db_xref="GeneID:3956019"
CDS 489484..490212
/locus_tag="DSY0423"
/note="similarity to COG1451 Predicted metal-dependent
hydrolase(Evalue: 2E-26)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516656.1"
/db_xref="GI:89893169"
/db_xref="GeneID:3956019"
/translation="MPSSLKLGKTIIPYEERKSSRIKRISIRITPEKVRVSAPARTAK
GEIQAFIEKNQEWILENWTKLQETMVKPPRVYETGEKVSYLGKELNLEIIDTPHKMIS
AFYRKDQETLEIKMPQELQGEQRQEAVREILDKWYKQKARAVFLQKLNLWSRQMGVTY
NQFRLKEQKTRWGSCSSLGNINLNWRAVMAPEPVLDYLVIHELSHLIYLNHSAEFWEH
VARYCPEHAAHRRWLREKGHSLVI"
misc_feature 489580..490188
/locus_tag="DSY0423"
/note="Protein of unknown function DUF45; Region: DUF45;
pfam01863"
/db_xref="CDD:145171"
gene 490314..491153
/locus_tag="DSY0424"
/db_xref="GeneID:3956020"
CDS 490314..491153
/locus_tag="DSY0424"
/note="similarity to COG2267 Lysophospholipase(Evalue:
8E-35)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516657.1"
/db_xref="GI:89893170"
/db_xref="GeneID:3956020"
/translation="MEQGCQLIQTREGTRIYYRQRLPAHPKAVVMICHGYAEHSSFYV
QFMEFLAEHGYGAYALDHRGHGHSEAERGHLDRFEVFLEDLDVFVDHVRELHPTQPLF
MFGHSMGGLISFNYGILHPGKLQGQIFSGAALARPVGTEYIPTFLFKLLNVVLKRLRI
RPKLSGKTTRNMAVRKISDGDSLVLRYATLGFFYQFACRGVAFAQEKAGRYQLPCLIL
HGTGDRLVPYQASQRIFAEISSRDKTLKLYEGLYHELIHEPEREEVLADIVDWLERRV
KFC"
misc_feature 490350..491144
/locus_tag="DSY0424"
/note="Lysophospholipase [Lipid metabolism]; Region: PldB;
COG2267"
/db_xref="CDD:225176"
misc_feature 490350..490583
/locus_tag="DSY0424"
/note="Putative lysophospholipase; Region: Hydrolase_4;
pfam12146"
/db_xref="CDD:221442"
gene 491371..492144
/locus_tag="DSY0425"
/db_xref="GeneID:3956021"
CDS 491371..492144
/locus_tag="DSY0425"
/note="similarity to COG1434 Uncharacterized ACR"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516658.1"
/db_xref="GI:89893171"
/db_xref="GeneID:3956021"
/translation="MKRSWGSWLSILAGIIGILDTIVVTGLKGGVNLGTILPAGVGSL
FLLWGLWGDKSRNTLFSQRFPGLRKLIRWGIVLLLGSFFIIEGLILWNTEDRIPEQGK
VLIILGAGLNGEQLSWTLRERVDKGVGILAENPQMKVVVSGGQGPGEWIPEAEAMAQY
LIGQGIAPERILKEDRSTSTMENFRFSRVLLDQLEGFDPAEPVLVITSDFHMFRSKIL
AERNGLNPVGVPCSTPWYIRPNAYLREYFAVVKSILIDR"
misc_feature 491464..492141
/locus_tag="DSY0425"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1434"
/db_xref="CDD:224351"
misc_feature 491677..492117
/locus_tag="DSY0425"
/note="YdcF-like. YdcF-like is a large family of mainly
bacterial proteins, with a few members found in fungi,
plants, and archaea. Escherichia coli YdcF has been shown
to bind S-adenosyl-L-methionine (AdoMet), but a
biochemical function has not been...; Region: YdcF-like;
cd06259"
/db_xref="CDD:99750"
misc_feature order(491908..491910,491917..491919,491989..491991,
492001..492003,492010..492012,492103..492105)
/locus_tag="DSY0425"
/note="putative active site [active]"
/db_xref="CDD:99750"
gene 492178..492705
/locus_tag="DSY0426"
/db_xref="GeneID:3956022"
CDS 492178..492705
/locus_tag="DSY0426"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516659.1"
/db_xref="GI:89893172"
/db_xref="GeneID:3956022"
/translation="MLRGSHGDEFSLRIVGYEFPDKDNDLGFDSNWLIVEVYCKHGEK
TWVKRAPSLLTWEAGILIKWARDILYKQPESEVLEFIEPNLLFQALRGENGKIETLRV
TLGHETCPDWVHTLRKPAYFSMDFAINPEDIEAFCQSLEADLLIYPRRLQGIKELASS
PRDRLRIVKKDNDRT"
gene complement(492711..494831)
/locus_tag="DSY0427"
/db_xref="GeneID:3956023"
CDS complement(492711..494831)
/locus_tag="DSY0427"
/note="similarity to COG0744 Membrane carboxypeptidase
(penicillin-binding protein)(Evalue: 1E-120)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516660.1"
/db_xref="GI:89893173"
/db_xref="GeneID:3956023"
/translation="MNNSPDPQGKWQAYLSKALAKCRTFKFPAFYKKPKFWRNLAILF
LFVLLSGLGAGYYWISTLDVSKLESPLAKPTYIYDQAGNKISQLSSSRIEPVTLEQVP
QLTQQAIIATEDKRFYEHQGVDFRSILRALIQDLKTRNFSEGGSTISQQLAKNLFLTS
DKTLSRKLKEAGYAIKIEATLSKEEILEAYLNHIYFGEGRWGLQEATRYYFGKNAEEL
NLEESALLAGILKGPTIYSPLQDKELALQRRNIVLAMMADQGYITAKEAAQATAAPIA
LRTKPLDNLSGKYAPYVDYVIEEAINRYGFTEDQILTLGLQIHTQMDAKVQQAAETVY
KDDQFFPQGQSDQKVQSGIAILDQHTGAIRGLVGYRGESAFRQFNHASQLKRQPGSII
KPLMVYGPALEKGYRPDALLYDGPLDLDGYAPKDWDGQTRGWVTMEEAIQQSWNIPAV
WLFDQIGIDTGKAFVQKAGIPLTEKDAHLSLALGGFAEGVSPLEIAQAYTAFANQGLM
HTAHAITKITTADGHVLAQMQPESVQVTEPAHAYTMTLLLQNVVQQGTAPKAALGSRP
VAGKTGSVELPPTQEFAGISKGQKDVWFVGYTPELTAAIWMGYDQTDRDHYLTTSGGS
GPAVVFHEVLSSALKDTPIKPFEVPAGYVKDWNIWPEGWDDQDEYDQNKDDDKDKKDK
KGKKNKKDPKDKNEFWDLFQDLWS"
misc_feature complement(494061..494588)
/locus_tag="DSY0427"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature complement(492912..494552)
/locus_tag="DSY0427"
/note="penicillin-binding protein, 1A family; Region:
PBP_1a_fam; TIGR02074"
/db_xref="CDD:233710"
misc_feature complement(492930..493778)
/locus_tag="DSY0427"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl17760"
/db_xref="CDD:248314"
gene 495216..496052
/gene="panB"
/locus_tag="DSY0428"
/db_xref="GeneID:3956024"
CDS 495216..496052
/gene="panB"
/locus_tag="DSY0428"
/note="catalyzes the formation of tetrahydrofolate and
2-dehydropantoate from 5,10-methylenetetrahydrofolate and
3-methyl-2-oxobutanoate"
/codon_start=1
/transl_table=11
/product="3-methyl-2-oxobutanoate
hydroxymethyltransferase"
/protein_id="YP_516661.1"
/db_xref="GI:89893174"
/db_xref="GeneID:3956024"
/translation="MKTTKDFWVMKNEGKKIVMITAYDYPSAKQAEQAGADIILVGDS
LGNVVLGYDSTVYVTMEDMIHHGKAAKRGAPNTFIVADMPFMSCHLSIRDTLLNGARL
IQETGAQAVKVEGADEMIPHIRALVRAGIPVVSHLGLTPQTAAVLGGFKVRGKDGEAA
RKMLEDVKECQEAGAFALVLECIPKQLAQEISTNLTIPTIGIGAGVHTDGQVLVYHDI
LTYGVNRAPKFVKAYANADQLMLKGLQDYADEVRSMNFPDDEHSFTMKEEELKTLYGG
RG"
misc_feature 495225..495986
/gene="panB"
/locus_tag="DSY0428"
/note="Ketopantoate hydroxymethyltransferase (KPHMT) is
the first enzyme in the pantothenate biosynthesis pathway.
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes
the first committed step in the biosynthesis of
pantothenate (vitamin B5), which is a...; Region:
KPHMT-like; cd06557"
/db_xref="CDD:119342"
misc_feature order(495225..495230,495285..495296,495303..495305,
495348..495350,495354..495371,495381..495386,
495399..495401,495408..495413,495420..495422,
495429..495431,495468..495473,495501..495503,
495513..495515,495522..495527,495540..495542,
495594..495611,495639..495644,495648..495659,
495741..495743,495861..495863,495870..495875,
495915..495917,495924..495938)
/gene="panB"
/locus_tag="DSY0428"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:119342"
misc_feature order(495276..495278,495333..495335,495339..495347,
495459..495461,495549..495551,495621..495623,
495636..495638,495756..495758,495849..495851,
495855..495857)
/gene="panB"
/locus_tag="DSY0428"
/note="active site"
/db_xref="CDD:119342"
misc_feature order(495342..495344,495459..495461,495549..495551)
/gene="panB"
/locus_tag="DSY0428"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119342"
gene complement(496101..496700)
/locus_tag="DSY0429"
/db_xref="GeneID:3956025"
CDS complement(496101..496700)
/locus_tag="DSY0429"
/note="similarity to COG1051 ADP-ribose pyrophosphatase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516662.1"
/db_xref="GI:89893175"
/db_xref="GeneID:3956025"
/translation="MPLPIVDYKFCPQCGKPLLSVDFSGQHRPHCPDCSFVFWGNFSL
GVGGVVWHEGKVLLVQRAHNPGKGNWTIPGGYVEQDEQIAVAITREIREETGIHAKPL
SVIALRDRPGEKHDAYIVFLLEYLGGTLQGEPEEVSDLGFFTLEECENLPIAQLSLSV
IKASRTLLIPTSPGFLPQTGVKMIGGDQAILYQISKEPE"
misc_feature complement(<496599..496670)
/locus_tag="DSY0429"
/note="RNHCP domain; Region: RNHCP; pfam12647"
/db_xref="CDD:193125"
misc_feature complement(496242..496571)
/locus_tag="DSY0429"
/note="Members of the Nudix hydrolase superfamily catalyze
the hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+, for their
activity and contain a highly...; Region:
Nudix_Hydrolase_15; cd04673"
/db_xref="CDD:240030"
misc_feature complement(496410..496478)
/locus_tag="DSY0429"
/note="nudix motif; other site"
/db_xref="CDD:240030"
gene complement(496742..497965)
/locus_tag="DSY0430"
/db_xref="GeneID:3956026"
CDS complement(496742..497965)
/locus_tag="DSY0430"
/note="similarity to COG0477 Permeases of the major
facilitator superfamily(Evalue: 1E-76)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516663.1"
/db_xref="GI:89893176"
/db_xref="GeneID:3956026"
/translation="MNTQYLNKFNIPRPILVLIIGGFIHSVGSSFMWPLNSIFMHNIL
GRSLTEAGALISLQALATLVGQFISGVLADRFGSRRVMIYGLIGTILPLILISCFPVW
EVYAPGLLFYGFAIAFIFVPINALVFTLWPEGGRRGFNLLYVFNNAGVAVGTALGGFI
AALSFKLVFLLNGLFFFIYLLMVLIFLSAKDIQSKPLSKSRVKVPIFKDRGFPVLIAL
CAAIFLMWGAYIQINTVLPVTMTNLGYSLPQYSILWTLNGVIIVAFQPVIHWIIRHWA
PTLSRQFYVSCLFYAIGFLILLGNFPYPSYFIMMIIITLGEMLVLPGVPAAAALIAPE
GKTATYQGVVGGAASGGRALGPILGGLAFDHYGGNMAWALALVFVSIALLPFYLYQRR
ERTFTQGTGAKEQAI"
misc_feature complement(496784..497938)
/locus_tag="DSY0430"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:225371"
misc_feature complement(496799..497923)
/locus_tag="DSY0430"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(496910..496912,496919..496924,
496931..496936,496943..496948,496979..496981,
496988..496993,497003..497005,497012..497017,
497024..497026,497171..497173,497183..497185,
497192..497194,497204..497206,497216..497218,
497255..497257,497264..497269,497276..497281,
497288..497290,497516..497518,497534..497539,
497546..497551,497582..497584,497591..497596,
497603..497608,497615..497620,497756..497761,
497765..497770,497780..497782,497789..497794,
497801..497803,497855..497860,497864..497872,
497879..497881))
/locus_tag="DSY0430"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 498217..498801
/locus_tag="DSY0431"
/db_xref="GeneID:3956027"
CDS 498217..498801
/locus_tag="DSY0431"
/note="similarity to COG1592 Rubrerythrin(Evalue: 5E-49)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516664.1"
/db_xref="GI:89893177"
/db_xref="GeneID:3956027"
/translation="MDFKDSKTFQNLVNGFAGESQARNRYTFYAGVAKNEGHQAIQNI
FISTADNEKEHAKVFYKFLQKYAGDQTEVFRVNADYPLNYRDTLANLKSAAAGEGEEV
IDYNTFADIADEEGYADIAVAFRKIATVEAHHQERYARLAAELENGTLYKKDQKISWK
CENCGYVHEGSGAPDLCPACQHPQGYFKPLPEVY"
misc_feature 498226..498780
/locus_tag="DSY0431"
/note="Rubrerythrin [Energy production and conversion];
Region: COG1592"
/db_xref="CDD:224508"
misc_feature 498235..498654
/locus_tag="DSY0431"
/note="Rubrerythrin, ferritin-like diiron-binding domain;
Region: Rubrerythrin; cd01041"
/db_xref="CDD:153100"
misc_feature order(498271..498273,498280..498282,498292..498294,
498370..498372,498379..498381,498505..498510,
498517..498519,498607..498609,498616..498618)
/locus_tag="DSY0431"
/note="binuclear metal center [ion binding]; other site"
/db_xref="CDD:153100"
misc_feature 498691..498780
/locus_tag="DSY0431"
/note="Rubredoxin, Small Modular nonheme iron binding
domain containing a [Fe(SCys)4] center, present in
rubrerythrin and nigerythrin and detected either N- or
C-terminal to such proteins as flavin reductase,
NAD(P)H-nitrite reductase, and...; Region: rubredoxin_SM;
cd00729"
/db_xref="CDD:238371"
misc_feature order(498697..498699,498706..498708,498745..498747,
498754..498756)
/locus_tag="DSY0431"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:238371"
gene complement(499104..500423)
/locus_tag="DSY0432"
/db_xref="GeneID:3955442"
CDS complement(499104..500423)
/locus_tag="DSY0432"
/note="similarity to COG0477 Permeases of the major
facilitator superfamily(Evalue: 4E-42)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516665.1"
/db_xref="GI:89893178"
/db_xref="GeneID:3955442"
/translation="MQPYVKSFRYGWSSWSILVIAFITVFFHRLSVGSVADELTREIP
MNSVTLGNLTAMNYYAYALMQIPVGILVDRIGVRKINFCGLLVTAAGSILFGLAHTLE
AAYLSRFLVGIGSSVIIVSIFKIQATWFPLSRFSALSGLTSFFGNFGSLLALYPLTFL
SLTFGWRNVFYWMAGISLLLALLVLWGVRDARTEIYSPPRETAAAGSTGPTGSVSPLS
RKHSQTPEHTSTAVKPLPFLAYLKESLSCVLKNPRTWPNVLILFAFTGSSTTLLGLWG
IPLMTQLYSLDKATAAGYVTFATFGFILGAPLISLWVRLLKGIRPALLAGTGLNLLLW
IYIVIIAGGRPAAELWPAFFFIFGLLIMTHILAFSNVTAVNPLNYSGMATAITNMAEF
IGSSLASLTIGLILDFSGNPSAAWWVILSMAALGFMAALLMKEQPAS"
misc_feature complement(<499893..500381)
/locus_tag="DSY0432"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(499227..500375)
/locus_tag="DSY0432"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:219516"
misc_feature complement(order(499974..499976,499992..499997,
500004..500009,500043..500045,500052..500057,
500064..500069,500076..500081,500217..500222,
500226..500231,500241..500243,500250..500255,
500262..500264,500313..500318,500322..500330,
500337..500339))
/locus_tag="DSY0432"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 500549..501013
/locus_tag="DSY0433"
/db_xref="GeneID:3955443"
CDS 500549..501013
/locus_tag="DSY0433"
/note="similarity to COG0589 Universal stress protein UspA
and related nucleotide-binding proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516666.1"
/db_xref="GI:89893179"
/db_xref="GeneID:3955443"
/translation="MPGVFKRRGAISMYKKILVPTDGSEFSVRAFKTAVELAGLFQSE
IVLIHVTYTPQALWGNTVPYGYVFSQEDVAKNGQMALDATMAEVSAEGVPTKTVLEIG
HPVIKIIDQIKKDGIDLVVIGSHGYGPITGSVLGSVSQRVLQKSPVPVLLVK"
misc_feature 500594..501007
/locus_tag="DSY0433"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature order(500606..500614,500696..500698,500912..500917,
500921..500926,500954..500965)
/locus_tag="DSY0433"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene 501199..501612
/locus_tag="DSY0434"
/db_xref="GeneID:3955444"
CDS 501199..501612
/locus_tag="DSY0434"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516667.1"
/db_xref="GI:89893180"
/db_xref="GeneID:3955444"
/translation="MKEKEIRLTSEEIDYLLKGTIHWEDIASRTAGPLRKTVDLGTRE
AESGDFLKKPSFKDIEQTKVPDRGPFNSEGQGRNFNHNEKGRESFNFKEDTDEDFAED
FLAEDQPFWSGTKVYIILSLTGCITLGTWAYFVFA"
gene 501839..502309
/locus_tag="DSY0435"
/db_xref="GeneID:3955445"
CDS 501839..502309
/locus_tag="DSY0435"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516668.1"
/db_xref="GI:89893181"
/db_xref="GeneID:3955445"
/translation="MGNLADRIEVYLKRILEQSAEGYVILQRGVLAEEFSCAPSQINY
VLDTRFSVERGYLVESRRGGGGYLRIVRLGFHDDGDFQTIMKQLIGSQLGESRAFNLL
QRLVEDEIITRREEEIIRTVFHRETLGPESPTINGLRAHMMKRILLTLSREDLH"
misc_feature 501845..502294
/locus_tag="DSY0435"
/note="Firmicute transcriptional repressor of class III
stress genes (CtsR); Region: CtsR; pfam05848"
/db_xref="CDD:147806"
gene 502293..502823
/locus_tag="DSY0436"
/db_xref="GeneID:3955446"
CDS 502293..502823
/locus_tag="DSY0436"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516669.1"
/db_xref="GI:89893182"
/db_xref="GeneID:3955446"
/translation="MRICIKQEGITMLCQHCQQREANVQFTKIVNGEMVKLYLCDHCA
KNAPEVSFVFSPGIIPDFLQSLFNFTTNAQALKEEACPQCGRRLSEITQAGKLGCSGC
YDKFQSELEPILRKIHGGGCHVGKIPARKGADLREKAEIEKLKEKLQQLIRKEEFEAA
AVVRDQIRELEQKLGG"
misc_feature 502326..502820
/locus_tag="DSY0436"
/note="Modulator of heat shock repressor CtsR, McsA
[Signal transduction mechanisms]; Region: COG3880"
/db_xref="CDD:226397"
gene 502795..503880
/locus_tag="DSY0437"
/db_xref="GeneID:3955447"
CDS 502795..503880
/locus_tag="DSY0437"
/codon_start=1
/transl_table=11
/product="ATP:guanido phosphotransferase"
/protein_id="YP_516670.1"
/db_xref="GI:89893183"
/db_xref="GeneID:3955447"
/translation="MNSSRSWGDETMERKEHLLKNSEWMRENPDTPVVLSSRIRLARN
LEGVPFPLGLSQEASQDIEQKVSAELESLTIDQDKLTYYSMKDLTPIEQYVLIEKHLI
SPALVNSRGARGVAINSDHRVSVMVNEEDHLRIQVLLPGDQLKEAYLLSNTMDDQLEE
RLDFAYREAQGYLTACPTNVGTGMRASVMVHMPALVMTNRVQQLLGALNHLGLAVRGL
YGEGSQAFGHIYQVSNQITLGKSEEDTITHLEAVTRQIIEQEVHAREGLVREAPLVLQ
DKVWRARGTLEKARLLNSEDALQCLSLDRLGVDMGILPPRQQSFSTLLVETLPASLQY
GLERELSPEQRDEERASYMRKAMAEVK"
misc_feature 502852..503862
/locus_tag="DSY0437"
/note="ATP:guanido phosphotransferase; Provisional;
Region: PRK01059"
/db_xref="CDD:234894"
misc_feature 502885..503583
/locus_tag="DSY0437"
/note="Phosphagen (guanidino) kinases found in bacteria;
Region: bacterial_phosphagen_kinase; cd07930"
/db_xref="CDD:153077"
misc_feature order(502900..502902,502906..502908,502912..502914,
503092..503094,503170..503172,503194..503196,
503347..503349,503353..503361,503440..503442,
503446..503448,503452..503457,503485..503487)
/locus_tag="DSY0437"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:153077"
misc_feature order(503182..503184,503320..503322,503458..503463)
/locus_tag="DSY0437"
/note="phosphagen binding site; other site"
/db_xref="CDD:153077"
misc_feature order(503431..503475,503479..503496)
/locus_tag="DSY0437"
/note="substrate specificity loop; other site"
/db_xref="CDD:153077"
gene 503918..506398
/locus_tag="DSY0438"
/db_xref="GeneID:3955448"
CDS 503918..506398
/locus_tag="DSY0438"
/note="similarity to COG0542 ATPases with chaperone
activity, ATP-binding subunit(Evalue: 0)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516671.1"
/db_xref="GI:89893184"
/db_xref="GeneID:3955448"
/translation="MNEKYTEKALKALQFASDEAKRMGSNVIGTEHLLLGLVAEGEGI
AAKSLHGIGVTPEKIREQIGNLTGIGQPFTGEVSLTPRVKRVMELAHEEARRHGVSYI
GTEHLLLGLLMEGEGVAARVLRNLGVSPERIWKQVVQLLGGQPDDIPMPGGAPGPGTA
KNNGAANTPALNEFGRDLTQQAREGRLDPVVGREDEIERVVQVLSRRTKNNPVLIGEP
GVGKTAIAEGLAQRIINNKVPETLAGKRVVTLDLSAVVAGSKYRGEFEERLKKVMEEI
RVDGRIIVFIDELHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKYIEK
DPALERRFQPITVGEPTVEQAVQILLGLRDRYEAHHRTQITDEAVEAAVKMSDRYISD
RFLPDKAIDLMDEAASRVRLAAFTAPPDLKSLEEKIEALKSEKEAAVLGQEFEKAAKF
RDEEHQLREELAQLRNTWESKRDISQSQVTADDIAQIVASWTGIPVKKLAQEESERLL
GLEETLHQRVVGQEDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVGKTELARAL
AEALFGEEDALIRIDMSEYMEKHAVSRLVGAPPGYIGHDEGGQLTEAIRRKPYSVILL
DEIEKAHPEVFNILLQVLEDGRLTDTKGRTVDFRNAVIIMTSNVGASFMKKEALGFAS
RRDEETEYKNMSSRVMEELKKTFRPEFLNRVDEIVVFHSLQTEGLLKITEILMKQVNG
RLQEQGYDLQVEKSALELIAKEGNDPTFGARPLRRAIQRLIEDSLSEKILLGEFKSGD
KIKVEAVEDKMKFAKVRARKSKKAEAAE"
misc_feature 503927..506341
/locus_tag="DSY0438"
/note="ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones]; Region: clpA; COG0542"
/db_xref="CDD:223616"
misc_feature 503963..504121
/locus_tag="DSY0438"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 504185..504343
/locus_tag="DSY0438"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 504488..504946
/locus_tag="DSY0438"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 504563..504586
/locus_tag="DSY0438"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(504566..504589,504776..504778,504887..504889)
/locus_tag="DSY0438"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 504764..504781
/locus_tag="DSY0438"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 504938..504940
/locus_tag="DSY0438"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 505190..505297
/locus_tag="DSY0438"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
misc_feature 505547..505951
/locus_tag="DSY0438"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 505574..505597
/locus_tag="DSY0438"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(505577..505600,505790..505792,505916..505918)
/locus_tag="DSY0438"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 505778..505795
/locus_tag="DSY0438"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 506081..506323
/locus_tag="DSY0438"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene 506651..508000
/locus_tag="DSY0439"
/db_xref="GeneID:3955449"
CDS 506651..508000
/locus_tag="DSY0439"
/note="Sms; stabilizes the strand-invasion intermediate
during the DNA repair; involved in recombination of donor
DNA and plays an important role in DNA damage repair after
exposure to mutagenic agents"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadA"
/protein_id="YP_516672.1"
/db_xref="GI:89893185"
/db_xref="GeneID:3955449"
/translation="MAKVKTRFFCQSCGQESPRWLGKCPGCGEWNTLVEEVVERAAAK
RTPLGVKATPLTEIQIREEERVSSGSQELNRVLGGGIVPGSFVLLGGEPGIGKSTLLL
QTAGLLAKGMDVLYISGEESEKQIKLRAERLGIKESRLHILTETRLEVVRDVALAMGP
GLLIVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKEEEIPIFLVGHVTKEGAIAG
PRVLEHIVDTVLYFEGDRHHVYRLLRAVKNRFGSTNEIGVFEMHEDGLVEVPNPSKVF
LGENSATAPGSSVAVIVEGSRPLLVEIQALVTPTTYGPPRRTATGIDYNRILMLLAVL
DKKVGLHLGAQDVFINIAGGIRIDEPGVDLACIAAIASSLGERPLKRYALIGEVGLTG
EVRGISQIENRVKEAVKLGFEGCIIPRINVSAVKVPGNFTVIAVKTVEEAVQVMFEQ"
misc_feature 506651..507994
/locus_tag="DSY0439"
/note="DNA repair protein RadA; Provisional; Region:
PRK11823"
/db_xref="CDD:236994"
misc_feature 506672..507769
/locus_tag="DSY0439"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:238541"
misc_feature 506921..506944
/locus_tag="DSY0439"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:238541"
misc_feature order(506924..506926,506936..506944,506996..506998,
507002..507004,507146..507151)
/locus_tag="DSY0439"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238541"
misc_feature 507137..507148
/locus_tag="DSY0439"
/note="Walker B motif; other site"
/db_xref="CDD:238541"
misc_feature <507656..507913
/locus_tag="DSY0439"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
gene complement(508136..508528)
/locus_tag="DSY0440"
/db_xref="GeneID:3955450"
CDS complement(508136..508528)
/locus_tag="DSY0440"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516673.1"
/db_xref="GI:89893186"
/db_xref="GeneID:3955450"
/translation="MENLTDRYQILVESLLIRHQSVLDILTKGQEASARVNRAVVKTV
TDCGCLSIDARKKPIPEEASFSDLKSLLDSQLDGELCESCKDIIETELGKQLFYIAAL
ANTLGISLDDVIQKEETRLSTLTIFNLT"
misc_feature complement(508181..>508288)
/locus_tag="DSY0440"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain superfamily; Region: NTP-PPase;
cl16941"
/db_xref="CDD:247648"
gene 508730..509206
/locus_tag="DSY0441"
/db_xref="GeneID:3955451"
CDS 508730..509206
/locus_tag="DSY0441"
/note="similarity to COG1329 Transcriptional regulators,
similar to M. xanthus CarD(Evalue: 9E-34)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516674.1"
/db_xref="GI:89893187"
/db_xref="GeneID:3955451"
/translation="MFDIGDRVVYPMHGAGIIEAIEEREVLGESHQYYVMNIPVGNMK
VYIPLKNVNQLGIRGVISSEEVPQVLKILENESTLPALAWNRRYRANMDRIKSGDIYS
VAEVVRSLSQRDREKGLSTGEKKMYDNAYQILVSELILAEGVQADEMSERIKGLLA"
misc_feature 508730..509203
/locus_tag="DSY0441"
/note="CarD-like/TRCF domain; Region: CarD_CdnL_TRCF;
cl00588"
/db_xref="CDD:241965"
gene 509285..510454
/locus_tag="DSY0442"
/db_xref="GeneID:3955452"
CDS 509285..510454
/locus_tag="DSY0442"
/note="similarity to COG1855 ATPases of the PilT
family(Evalue: 3E-96)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516675.1"
/db_xref="GI:89893188"
/db_xref="GeneID:3955452"
/translation="MMIRNIVRVIITVLAGAIGFYLNVVLMRLDVLQSLGWQISPIWA
FVAMVAIFAILGFLIAPASMRGFLKMISWFDARMTKVPTHDLIGGAVGVIIGLIIASL
LSSALRGIPIIGSVISIILSVSLGYLGLIIGVKRKEEVLGFFTFLPKFKGDKGEKGKG
KDGNRQSLGAALPNYKILDTSVIIDGRIADIVQTGFLEGTLLIPGFVLEELQHIADSS
DLLKRNRGRRGLDILNQISKEELANNVEIMEIDFEDISEVDSKLVRLGQNLGAPILTN
DYNLNKVAELQGVKVLNINELANAVKPIVLPGEEMEVQVMKEGKEPGQGVAYLDDGTM
IVVDTGRRYMGQTITVLVTSVLQTAAGRMIFAKPKALVEKKSIGLSGTNEVNALG"
misc_feature 509810..510193
/locus_tag="DSY0442"
/note="PIN domain of Thermus Thermophilus Hb8,
uncharacterized Bacillus subtilis YacL, and other
bacterial homologs; Region: PIN_YacL; cd09877"
/db_xref="CDD:189047"
misc_feature order(509819..509821,509912..509914,510059..510061,
510113..510115)
/locus_tag="DSY0442"
/note="putative active site [active]"
/db_xref="CDD:189047"
gene 510495..511175
/locus_tag="DSY0443"
/db_xref="GeneID:3955453"
CDS 510495..511175
/locus_tag="DSY0443"
/note="similarity to COG1211
4-diphosphocytidyl-2-methyl-D-erithritol synthase(Evalue:
1E-51)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516676.1"
/db_xref="GI:89893189"
/db_xref="GeneID:3955453"
/translation="MGASVNKQFLPLQGRPLLAHTLSLFERSGAVAEIVIVSAKEDRE
RIAELVRTEGFQKVSAIVLGGEERQESVFAGVKALSSLIQRVAVHDGARPLLTCLELN
RFFTEAEKFGAAIMAVPVKDTIKRVDAQGKVLETPPRETLRAVQTPQVFARSLLEEAH
HKAREAGYLTTDDAALIEWLGHPVQTLMGSLENIKITTPEDLDLAEAILAKRMNQVNH
GDRSLDSL"
misc_feature 510495..511109
/locus_tag="DSY0443"
/note="CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production; Region:
CDP-ME_synthetase; cd02516"
/db_xref="CDD:133009"
misc_feature order(510513..510515,510687..510698,510705..510707,
510762..510770,511077..511079)
/locus_tag="DSY0443"
/note="substrate binding site; other site"
/db_xref="CDD:133009"
misc_feature order(510771..510773,510828..510830,510852..510854,
510858..510860,510912..510929,511005..511010,
511014..511019,511026..511028,511041..511052,
511062..511067)
/locus_tag="DSY0443"
/note="dimer interface; other site"
/db_xref="CDD:133009"
gene 511265..511741
/locus_tag="DSY0444"
/db_xref="GeneID:3955454"
CDS 511265..511741
/locus_tag="DSY0444"
/note="similarity to COG0245 2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase(Evalue: 3E-52)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516677.1"
/db_xref="GI:89893190"
/db_xref="GeneID:3955454"
/translation="MLRVGIGYDVHALVAGRPLILAGIDIPHEKGLLGHSDADVLTHT
LMDALLGALALGDLGKHFPDTDERYRGISSMKLLEQVMKLLEERGYAIGNIDCIIAAQ
RPKLAPYIPQMRENLARALKTDLENVSVKATTTERLGFEGREEGISSQAIVCLVKV"
misc_feature 511271..511729
/locus_tag="DSY0444"
/note="MECDP_synthase
(2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
encoded by the ispF gene, catalyzes the formation of
2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
biosynthesis; Region: MECDP_synthase; cd00554"
/db_xref="CDD:100025"
misc_feature order(511271..511276,511280..511282,511286..511288,
511292..511300,511310..511312,511415..511417,
511421..511426,511430..511435,511544..511546,
511550..511552,511556..511558,511577..511579,
511583..511585,511649..511651,511655..511660,
511667..511675,511712..511714,511718..511720,
511724..511726)
/locus_tag="DSY0444"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100025"
misc_feature order(511289..511291,511295..511297,511391..511393)
/locus_tag="DSY0444"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:100025"
misc_feature order(511433..511435,511439..511441,511565..511570,
511574..511585,511658..511666)
/locus_tag="DSY0444"
/note="CDP-binding sites; other site"
/db_xref="CDD:100025"
gene 511772..513238
/gene="gltX"
/locus_tag="DSY0445"
/db_xref="GeneID:3955455"
CDS 511772..513238
/gene="gltX"
/locus_tag="DSY0445"
/note="Charges one glutamine molecule and pairs it to its
corresponding RNA trinucleotide during protein
translation"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_516678.1"
/db_xref="GI:89893191"
/db_xref="GeneID:3955455"
/translation="MLKVRFAPSPTGPLHIGGARSALFNYLLARKEDGVFIVRSEDTD
LERSSRESEHNIMEALRWLNIQWDEGIEVGGDNGPYRQTERLALYQEYTDRLLASGDA
YYCYCSEEELEQERQDLMAKGETPRYLGKCRHLSAAERQTYEAAGRKPVVRFRVPEGR
QILINDRVRGEVVFDSDGIGDYVIVKSDGIPTYNFAVVIDDTTMNITHVIRGEEHLSN
TPRQVLIYQALGLPTPEFAHISLILNTEGKKMSKRDGDTAVIDYQAKGYLPEAVVNFI
ALMGWSPPGEEEFFTLEEMTQAFSLERVSKSPAVFDLNKLNYMNAHYIKQADPERLTD
LAVPYLREMGAIPQGTLSEEERAWVTHYVQAIINHLSYMAQVKDFVHYVQGGEAPTPE
GEALEILQGEQVPAVLDLFVEKLKSLEAIRVDTVKPLFKQITKETKLGGKQVFMPIRI
ALTGQMHGPELYDIVPLLGLENVLSRLAGTKALLAGSR"
misc_feature 511772..513205
/gene="gltX"
/locus_tag="DSY0445"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:234953"
misc_feature 511772..>512089
/gene="gltX"
/locus_tag="DSY0445"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(511784..511786,511790..511798,511820..511825,
511829..511834,511892..511894,512087..512089)
/gene="gltX"
/locus_tag="DSY0445"
/note="active site"
/db_xref="CDD:173905"
misc_feature 511814..511825
/gene="gltX"
/locus_tag="DSY0445"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature <512327..512749
/gene="gltX"
/locus_tag="DSY0445"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(512348..512350,512360..512362,512402..512407,
512411..512416,512489..512494,512516..512521)
/gene="gltX"
/locus_tag="DSY0445"
/note="active site"
/db_xref="CDD:173905"
misc_feature 512516..512530
/gene="gltX"
/locus_tag="DSY0445"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene 513717..514388
/locus_tag="DSY0446"
/db_xref="GeneID:3955456"
CDS 513717..514388
/locus_tag="DSY0446"
/note="similarity to COG1045 Serine
acetyltransferase(Evalue: 2E-67)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_516679.1"
/db_xref="GI:89893192"
/db_xref="GeneID:3955456"
/translation="MVFGQIKQDIKVIFERDPAAKTIVEVILCYPGLHALIAHRLAHC
LYKKNMVLIPRLISQTSRFFTGIEIHPGAKIGQGLFIDHGMGVVIGETAEVGDNVTIY
QGVTLGGTGKEKGKRHPTVGNNVFIGSGAKILGSIKIGDNVKIGAGSVVTKPVPSNTT
VVGVPGKVVSRHGMPLKELHVVTKSVCNKEIRAEEMPDPVQETLQILMERINYLEKKL
GEKES"
misc_feature 513732..514217
/locus_tag="DSY0446"
/note="serine O-acetyltransferase; Region: cysE;
TIGR01172"
/db_xref="CDD:200082"
misc_feature <513732..513824
/locus_tag="DSY0446"
/note="Serine acetyltransferase, N-terminal; Region:
SATase_N; cl05762"
/db_xref="CDD:244186"
misc_feature 513909..514211
/locus_tag="DSY0446"
/note="Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl group
of L-serine to form O-acetylserine, as the first step of a
two-step biosynthetic pathway in bacteria and plants
leading to the formation of...; Region: LbH_SAT; cd03354"
/db_xref="CDD:100045"
misc_feature order(513912..513914,513918..513920,513963..513965,
514065..514067,514155..514157,514164..514166,
514170..514172)
/locus_tag="DSY0446"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100045"
misc_feature order(513960..513965,514020..514025,514041..514046,
514065..514070,514101..514103,514146..514148,
514152..514157,514164..514166,514170..514172,
514194..514196,514209..514211)
/locus_tag="DSY0446"
/note="active site"
/db_xref="CDD:100045"
misc_feature order(513960..513965,514041..514043,514065..514070)
/locus_tag="DSY0446"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100045"
misc_feature order(514020..514025,514041..514046,514101..514103,
514146..514148,514152..514157,514164..514166,
514170..514172,514194..514196,514209..514211)
/locus_tag="DSY0446"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100045"
gene 514394..515827
/gene="cysS"
/locus_tag="DSY0447"
/db_xref="GeneID:3955457"
CDS 514394..515827
/gene="cysS"
/locus_tag="DSY0447"
/note="catalyzes a two-step reaction; charges a cysteine
by linking its carboxyl group to the alpha-phosphate of
ATP then transfers the aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="cysteinyl-tRNA synthetase"
/protein_id="YP_516680.1"
/db_xref="GI:89893193"
/db_xref="GeneID:3955457"
/translation="MALRLFNTMSHQKEEFKPREEGKVGMYTCGPTVYNYFHVGNGRM
LVVFDMIRRYLLYKGYDVTFVQNFTDIDDKIIKRGQEEGRDPLELAQDYIGEYFKDAA
ALNLMPASIHPKATDHIPEMIEIIKGLEEQGLAYAVDGDVYFAVDKLPAYGKLSGRTL
EDMQAGARVEVGERKQNPMDFALWKNAKPGEPFWESPWGKGRPGWHIECSAMSLKYLG
SGFDIHGGGGDLVFPHHENEIAQAEGYLHGETFARYWMHNAFLTINQQKMSKSLGNFF
TVREILEHFPGEVIRFYLLGTHYRSPLDFDDENLQMAQKGLERLQTSIRLADEALGRQ
GQNSADAASGQKLRAAAEEARREFAEAMDDDFNSALAYASLFELGKAINAHVQAYPYS
SEGLLKARATLWELADVLGFDLAKPANQAEAGNQKLDQVMELLLEVRAIARKKKDWEM
SDLIRDRLKDLGIVLEDTPQGARWTLK"
misc_feature 514394..515824
/gene="cysS"
/locus_tag="DSY0447"
/note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
PRK00260"
/db_xref="CDD:234705"
misc_feature 514403..>514750
/gene="cysS"
/locus_tag="DSY0447"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature order(514478..514489,514505..514507,514511..514516,
514523..514528,514592..514594,514598..514600,
514739..514741)
/gene="cysS"
/locus_tag="DSY0447"
/note="active site"
/db_xref="CDD:173899"
misc_feature 514505..514516
/gene="cysS"
/locus_tag="DSY0447"
/note="HIGH motif; other site"
/db_xref="CDD:173899"
misc_feature <515006..515308
/gene="cysS"
/locus_tag="DSY0447"
/note="catalytic core domain of cysteinyl tRNA synthetase;
