LOCUS NC_008025 2467205 bp DNA circular BCT 22-DEC-2012
DEFINITION Deinococcus geothermalis DSM 11300, complete genome.
ACCESSION NC_008025
VERSION NC_008025.1 GI:94984109
DBLINK Project: 58275
BioProject: PRJNA58275
KEYWORDS .
SOURCE Deinococcus geothermalis DSM 11300
ORGANISM Deinococcus geothermalis DSM 11300
Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales;
Deinococcaceae; Deinococcus.
REFERENCE 1 (bases 1 to 2467205)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K.,
Zhai,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of geothermalis DSM 11300
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2467205)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2467205)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K.,
Zhai,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-APR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000359.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634504
Source DNA available from Michael J Daly (mdaly@usuhs.mil)
Bacteria available from DSMZ: DSM 11300
Contacts: Michael J Daly (mdaly@usuhs.mil)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2467205
/organism="Deinococcus geothermalis DSM 11300"
/mol_type="genomic DNA"
/strain="DSM 11300"
/db_xref="taxon:319795"
gene 222..1634
/gene="dnaA"
/locus_tag="Dgeo_0001"
/db_xref="GeneID:4057128"
CDS 222..1634
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_603474.1"
/db_xref="GI:94984110"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:4057128"
/translation="MKGEVRVITQEIWADVLGYVRKNISEVEYHTWFAPVKNLGVQDG
ALVIGVRNSFAQEWFRKHYLELLEDALRALGAQNPQISFQVLPASQDALLLPSDPPPA
PANSSPGRSLPGQPPSQVPSESRQVLNPKYTFENFVVGPNNNLAHAAALAVAESPGKA
YNPLFIYGDVGLGKTHLMHAVGHYIMERFPDKRIEYVSTESFTNELINAIRDDKTTQF
RNRYRSVDLLLVDDIQFLAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEG
RLRSRFEWGLITDIQTPEFETRVAILKMNAEHNRIDIPQEVLELIARQVTSNIRELEG
ALMRVVAFASLNNVPFSRAVAAKALSNVFAPQVVKVEMGEVLRAVATHFGLAPEVIRG
SGRAREVVVPRQVAMYLIRELTDHSLPEIGQFFGRDHSTVMHAVSKVSEQMSKDPELA
ATVEALRRQLQDVEDEKKDA"
misc_feature 246..1604
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 249..440
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 690..1079
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 723..746
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(726..749,912..914,1011..1013)
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 900..917
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 1050..1052
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1341..1601
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1404..1406,1428..1433,1452..1454,1470..1478,
1500..1514,1521..1523,1530..1535)
/gene="dnaA"
/locus_tag="Dgeo_0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 2025..3107
/locus_tag="Dgeo_0003"
/db_xref="GeneID:4057130"
CDS 2025..3107
/locus_tag="Dgeo_0003"
/note="KEGG: dra:DR0001 DNA polymerase III, beta subunit,
ev=1e-169, 87% identity;
TIGRFAM: DNA polymerase III, beta subunit: (3.8e-56);
PFAM: DNA polymerase III, beta chain: (1.1e-18)"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_603476.1"
/db_xref="GI:94984112"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:4057130"
/translation="MRAHVTKKTLSEGLGLLERVIPSRSSNPLLTALKVEASEAGLTL
SGTNLEIDLSYFVPAEVQAPQSFVIPAHLFAQIVRNLGGELVELELTGGELSVRAGGS
DFKLQTGDLEAYPPLSFPTHTDVSLDAAELARALGSVRYAASNEAFQAVFRGIKLEHR
PASARVVASDGYRVAIRDFPASGDGRNLIVPARSADELIRVLKDGEARFTYGEGLLSV
TTDRVRMNLKLLDGEFPDYERVIPKDVKLQVTLPATALKEAVGRVAVLADKNANNRVE
FLVSEGKLRLAAEGDYGRAQDTLDVVQGGAEPAMSLAFNARHVLDALGPIEGDAELLF
SGSTSPAIFRASGGGDYMAVMVTLRV"
misc_feature 2025..3104
/locus_tag="Dgeo_0003"
/note="DNA polymerase III subunit beta; Provisional;
Region: PRK14945"
/db_xref="CDD:184909"
misc_feature 2025..3101
/locus_tag="Dgeo_0003"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(2094..2096,2238..2240,2259..2261,2601..2603)
/locus_tag="Dgeo_0003"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(2241..2243,2250..2252,2325..2327,2331..2333,
2817..2819,2910..2915)
/locus_tag="Dgeo_0003"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2529..2531,2535..2546,2967..2969,3090..3101)
/locus_tag="Dgeo_0003"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2529..2531,2535..2540,2742..2744,2850..2852,
2889..2894,2976..2978,3090..3101)
/locus_tag="Dgeo_0003"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 3245..4513
/gene="eno"
/locus_tag="Dgeo_0004"
/db_xref="GeneID:4057131"
CDS 3245..4513
/gene="eno"
/locus_tag="Dgeo_0004"
/note="enolase; catalyzes the formation of
phosphoenolpyruvate from 2-phospho-D-glycerate in
glycolysis"
/codon_start=1
/transl_table=11
/product="phosphopyruvate hydratase"
/protein_id="YP_603477.1"
/db_xref="GI:94984113"
/db_xref="InterPro:IPR000941"
/db_xref="GeneID:4057131"
/translation="MNIEKVIAREVLDSRGNPTVEAEVFLDSGFSGRAIVPSGASTGT
HEALELRDGDGRYGGKGVLRAVQNVNEVLAPALVGLDASEQGAVDAAMLALDGTPNKG
RLGGNAILAVSLATARAAANELGVPLYRYLGGSNAKTLPVPMMNVINGGAHADNNVDF
QEFMVMPVGAPTFREALRYGAETFHALKKVLAGRGYNTNVGDEGGFAPDLKSNEEALE
VLLEAIEKAGYEPGKDIAIALDPATTELYRDGQYHLESEGRSLSTAEMVDFWADWVSR
YPIVSIEDGLAEDDWDGWRLLTERLGDRVQLVGDDLFVTNPERLARGIETGVGNAILV
KVNQIGTLTESMDAIELAKRSRYGTIISHRSGESEDAFIADLAVATNAGQIKTGSASR
SDRIAKYNQLLRIEDGLGDRAVYLGRRALR"
misc_feature 3245..4510
/gene="eno"
/locus_tag="Dgeo_0004"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:178845"
misc_feature 3257..4465
/gene="eno"
/locus_tag="Dgeo_0004"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:48188"
misc_feature order(3263..3265,3269..3295,3305..3307,3341..3343,
3704..3712,3773..3778,3785..3790,3797..3802,3839..3844,
3863..3865,3869..3871,4343..4351,4418..4426,4430..4435,
4442..4444,4451..4456,4463..4465)
/gene="eno"
/locus_tag="Dgeo_0004"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48188"
misc_feature order(3365..3367,3962..3964,4091..4093,4172..4174)
/gene="eno"
/locus_tag="Dgeo_0004"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48188"
misc_feature order(3701..3703,3851..3853,4247..4249,4331..4339,
4400..4402)
/gene="eno"
/locus_tag="Dgeo_0004"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:48188"
gene 4600..6048
/locus_tag="Dgeo_0005"
/db_xref="GeneID:4058720"
CDS 4600..6048
/locus_tag="Dgeo_0005"
/note="PFAM: pyruvate kinase: (9.6e-166);
KEGG: dra:DR2635 pyruvate kinase, ev=0.0, 86% identity"
/codon_start=1
/transl_table=11
/product="pyruvate kinase"
/protein_id="YP_603478.1"
/db_xref="GI:94984114"
/db_xref="InterPro:IPR001697"
/db_xref="GeneID:4058720"
/translation="MKHFDRATKIVATIGPASRNPETLGRMIDAGLNVVRMNFSHGDP
EDHRQTVQLVRELAAKKGVTIGILQDLQGPKIRVGRFREGAVKLEPGQKFTITMDDVE
GDETHVSSTYKGLALDVHPGMILLLDDGNLALKVDQVRGQEILTTVVIGGVLKNNKGI
NVPQADLAVPALSDKDVQDMEFGAQLGVDWVALSFVRSRDDLLLARHYLARFGSRAKL
MAKIEKPQAVDRFEDILREVDGIMVARGDLGVEMRPEQVPTIQKRLIRLCREAGKPVI
TATQMLESMINLPRPTRAEASDVANAIYDGTDAVMLSAESAAGQYPVEAVAMMDRIAR
EAEASEHYELMQRQLVVETELAQDSIAFAACSIGEKLEASAIVTFTSTGGAAMRVAKY
RPPLAILALTPNEQTRNQLALSWGVVPMLSEDPHDTDDMVRIANDELKKSGLADVGDR
YVITAGVPFGVRGTTNMLRVERLREEDLSERV"
misc_feature 4612..5988
/locus_tag="Dgeo_0005"
/note="pyruvate kinase; Provisional; Region: PRK05826"
/db_xref="CDD:180277"
misc_feature 4615..6009
/locus_tag="Dgeo_0005"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
misc_feature order(4618..4623,4789..4791,4795..4797,4819..4830,
5077..5082,5098..5100,5107..5121,5164..5166,5188..5190,
5209..5211,5242..5244,5350..5352,5404..5409,5419..5421,
5515..5517,5521..5523,5608..5610,5614..5619,5770..5772,
5776..5778,5782..5784,5815..5817,5824..5829,5833..5835,
5839..5847)
/locus_tag="Dgeo_0005"
/note="domain interfaces; other site"
/db_xref="CDD:29370"
misc_feature order(4705..4707,4711..4713,4807..4809,5182..5184,
5260..5262,5266..5268,5338..5340,5434..5436)
/locus_tag="Dgeo_0005"
/note="active site"
/db_xref="CDD:29370"
gene complement(6295..7536)
/locus_tag="Dgeo_0006"
/db_xref="GeneID:4058721"
CDS complement(6295..7536)
/locus_tag="Dgeo_0006"
/note="catalyzes the formation of tyrosyl-tRNA(Tyr) from
tyrosine and tRNA(Tyr)"
/codon_start=1
/transl_table=11
/product="tyrosyl-tRNA synthetase"
/protein_id="YP_603479.1"
/db_xref="GI:94984115"
/db_xref="InterPro:IPR002305"
/db_xref="InterPro:IPR002307"
/db_xref="InterPro:IPR002942"
/db_xref="GeneID:4058721"
/translation="MTTTEIRPNLPVDEQLAILRRGVVDLVTEDDLRRKLERGQPLRI
KLGADPTRPDLHLGHAVILRKMRQFQDLGHKVIMLIGDFTAMIGDPSGKSKTRPPLTL
EETRANAQSYLEQCRLILRDEPELLELRFNSEWLEPLGYADVIRLASRYTVARILERD
DFTKRLSAGTPISLHELLYPLTQGYDSVALHSDVELGGTDQLFNNLVGRALQRDYGQE
PQVVMTLPLLVGLDGTEKMSKSLDNYIGLTDEPDVMFAGLMKVPDPLLENYFTLLTDL
PPERIQALLAGHPVAAHRELARQVVAWLHPQADLDAAEERFRAVAKGGIPENVPTVTV
AREELGESGRVSMARLVVLAGLEPSNGAARKLIGNRGLKLNGKPYTEPQGTLSQDELT
EEGGVVIQKGKDRFVRLILGT"
misc_feature complement(6304..7506)
/locus_tag="Dgeo_0006"
/note="tyrosyl-tRNA synthetase; Validated; Region:
PRK05912"
/db_xref="CDD:180311"
misc_feature complement(6631..7413)
/locus_tag="Dgeo_0006"
/note="catalytic core domain of tyrosinyl-tRNA synthetase;
Region: TyrRS_core; cd00805"
/db_xref="CDD:173902"
misc_feature complement(order(6820..6831,6853..6858,6934..6936,
6943..6948,6952..6954,6979..6981,6988..6990,7000..7002,
7360..7365,7369..7371,7390..7398,7402..7404))
/locus_tag="Dgeo_0006"
/note="active site"
/db_xref="CDD:173902"
misc_feature complement(7360..7371)
/locus_tag="Dgeo_0006"
/note="HIGH motif; other site"
/db_xref="CDD:173902"
misc_feature complement(order(6991..6996,7003..7008,7012..7014,
7066..7071,7075..7086,7090..7095,7099..7107,7111..7116,
7276..7281,7288..7290))
/locus_tag="Dgeo_0006"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173902"
misc_feature complement(6817..6831)
/locus_tag="Dgeo_0006"
/note="KMSKS motif; other site"
/db_xref="CDD:173902"
gene 7665..8285
/locus_tag="Dgeo_0007"
/db_xref="GeneID:4058722"
CDS 7665..8285
/locus_tag="Dgeo_0007"
/note="PFAM: MOSC: (2.7e-30);
KEGG: dra:DR0273 hypothetical protein, ev=1e-77, 77%
identity"
/codon_start=1
/transl_table=11
/product="MOSC domain-containing protein"
/protein_id="YP_603480.1"
/db_xref="GI:94984116"
/db_xref="InterPro:IPR005302"
/db_xref="GeneID:4058722"
/translation="MLRSVASRASSSSLFAVKTLHELRSTFPRVGLLEWIGLREARRA
PVRSVPEAEVHPLIGLIGDHGRTAPPRLRALTGEPGETPVSGAAAPIPGGPGRRQVTL
LQAEHLPVIAALTGREQVRPEQLRRNLLIRGIPLLALKDARFRVGEVVLEGTGECHPC
SRMEETLGEGGYNAVRGHGGLTARVISGGVIRVGDPVLFLGPGTAA"
misc_feature 7953..8255
/locus_tag="Dgeo_0007"
/note="MOSC domain; Region: MOSC; pfam03473"
/db_xref="CDD:202655"
misc_feature <7956..>8255
/locus_tag="Dgeo_0007"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2258"
/db_xref="CDD:32439"
gene 8301..8852
/locus_tag="Dgeo_0008"
/db_xref="GeneID:4058723"
CDS 8301..8852
/locus_tag="Dgeo_0008"
/note="PFAM: Uncharacterized protein UPF0114: (1.5e-38);
KEGG: dra:DR0275 hypothetical protein, ev=2e-58, 65%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603481.1"
/db_xref="GI:94984117"
/db_xref="InterPro:IPR005134"
/db_xref="GeneID:4058723"
/translation="MSRPRPLSDAPRTAARAFGFTRLIVELGVLSSFAFSLALFIAAI
VQAYHTIGEAFRRLGEADTTKHLLIAAVEQTDTLLVGMALLIISLGLQALFIGQLQNV
PAWLHVRTFDDLKQKLIGVVITALAVNFFAVALEWTGGAEILTYGAAIAAVILAVGAY
SVVLRGQTADQAEEGKPDEDTKP"
misc_feature 8349..8705
/locus_tag="Dgeo_0008"
/note="Uncharacterized protein family, UPF0114; Region:
UPF0114; pfam03350"
/db_xref="CDD:112177"
gene 8833..9510
/locus_tag="Dgeo_0009"
/db_xref="GeneID:4058724"
CDS 8833..9510
/locus_tag="Dgeo_0009"
/note="PFAM: protein of unknown function DUF633: (7e-65);
KEGG: dra:DR0276 hypothetical protein, ev=2e-82, 69%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603482.1"
/db_xref="GI:94984118"
/db_xref="InterPro:IPR001854"
/db_xref="InterPro:IPR006901"
/db_xref="GeneID:4058724"
/translation="MKTPSLDARLEAVLALICAEVHADIGSDHAKLPIRLVREGRVAR
GVVVELNPGPLALARRNVARAGLTHRLEVRAGDGFAPLVPGEVDSASLTGMGAGTVAG
ILRRAGDRLPPTLIVQPNDSPRPLRIWAHEDGYHLTAERLIPGHWIYPVLQLERRGGP
DPAYLGLPLNAALRYGPHLLQAGSALLRAQVQADLTRLTPLARPGRPAQAELETARAA
LEVLEGA"
misc_feature 8896..9504
/locus_tag="Dgeo_0009"
/note="Family of unknown function (DUF633); Region:
DUF633; pfam04816"
/db_xref="CDD:203094"
gene complement(9612..11432)
/locus_tag="Dgeo_0010"
/db_xref="GeneID:4058725"
CDS complement(9612..11432)
/locus_tag="Dgeo_0010"
/note="Catalyzes the first step in hexosamine metabolism,
converting fructose-6P into glucosamine-6P using glutamine
as a nitrogen source"
/codon_start=1
/transl_table=11
/product="glucosamine--fructose-6-phosphate
aminotransferase"
/protein_id="YP_603483.1"
/db_xref="GI:94984119"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR001347"
/db_xref="InterPro:IPR005855"
/db_xref="GeneID:4058725"
/translation="MCGIVGYIGTRQAQDVLLSGLSRLEYRGYDSAGVAVGDGACIAV
KKKAGKLANLSGELEQAPLRGTLGIGHTRWATHGLPNDTNAHPHATEDGKIVIIHNGI
IENYLSLKEGLIARGHTFKSETDSEVLAHLIEEAYTGDLYEAVRQALLQVRGAYSLVV
THVHHREIVAARTVSPLVMGVGEGEMFLASDVPALLPYTRRMVFLHDGDMAVLNDDGY
RLTDLQGKPVERPVDLIEWDAEAAEKGGFDTYMLKEIYEQPQALTNTLIGRLHDETGE
VNLDIDLDPQSFKRISIIACGTAYYAGLVGEYLIEQLARIPVEVDVASEYRYRTPIVN
EETLAIVVSQSGETIDTLEALREAKKGGAQTLGVINAKGSSMTRELDHTLYIHAGPEI
GVASTKAYTSMVSAFVLLSLWLGRARGTLSEEQAQELLHATRELPRLVEEALAPERVE
NIRRVAEKYAHARDYLFLGRGVNAPTAYEGALKLKEISYIHAEAYAAGEMKHGPIALI
DEHLPVVVMATASRLLEKTISNIQEVKARSGKVIALLSDGDTENARHADDVLYVPHAH
ELVSPVVNAVAMQLLAYFTATALGKDVDKPRNLAKSVTVE"
misc_feature complement(9615..11432)
/locus_tag="Dgeo_0010"
/note="glucosamine--fructose-6-phosphate aminotransferase;
Reviewed; Region: PRK00331"
/db_xref="CDD:178980"
misc_feature complement(10794..11429)
/locus_tag="Dgeo_0010"
/note="Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the N-terminus
of glucosamine-6P synthase (GlmS, or GFAT in humans). The
glutaminase domain catalyzes amide nitrogen transfer from
glutamine to the appropriate substrate. In...; Region:
GFAT; cd00714"
/db_xref="CDD:48478"
misc_feature complement(order(11055..11060,11130..11135,11175..11177,
11202..11207,11211..11216,11352..11354,11427..11429))
/locus_tag="Dgeo_0010"
/note="glutaminase active site [active]"
/db_xref="CDD:48478"
misc_feature complement(10188..10565)
/locus_tag="Dgeo_0010"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:88405"
misc_feature complement(order(10383..10385,10449..10451,10458..10460,
10470..10472,10476..10478,10497..10502,10509..10514,
10542..10547))
/locus_tag="Dgeo_0010"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88405"
misc_feature complement(order(10398..10406,10536..10541))
/locus_tag="Dgeo_0010"
/note="active site"
/db_xref="CDD:88405"
misc_feature complement(9621..10085)
/locus_tag="Dgeo_0010"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:88406"
misc_feature complement(order(9624..9626,9639..9644,9834..9839,
9843..9845,9855..9860,9909..9920,9924..9932,9936..9938,
9948..9950,9954..9956,9960..9962,9966..9968,9978..9980,
10020..10022))
/locus_tag="Dgeo_0010"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88406"
misc_feature complement(order(9975..9977,9984..9986))
/locus_tag="Dgeo_0010"
/note="active site"
/db_xref="CDD:88406"
gene complement(11803..13008)
/locus_tag="Dgeo_0011"
/db_xref="GeneID:4058726"
CDS complement(11803..13008)
/locus_tag="Dgeo_0011"
/note="PFAM: Cys/Met metabolism
pyridoxal-phosphate-dependent enzymes: (2e-197)
DegT/DnrJ/EryC1/StrS aminotransferase: (0.00017) aromatic
amino acid beta-eliminating lyase/threonine aldolase:
(0.0014);
KEGG: dra:DR0921 methionine-gamma-lyase, ev=1e-158, 73%
identity"
/codon_start=1
/transl_table=11
/product="methionine gamma-lyase"
/protein_id="YP_603484.1"
/db_xref="GI:94984120"
/db_xref="InterPro:IPR000277"
/db_xref="InterPro:IPR000653"
/db_xref="InterPro:IPR001597"
/db_xref="GeneID:4058726"
/translation="MGTMSKQESQGFRTRAVHAGHGLDPVTGAHAVPIYATSTFGYGN
AERGARLFAGEEPGYFYSRLSNPTVRAFEEKIASLEEAGDAVAFGSGMGAASAVALTL
LKAGDAVAFVGPLYGGTEGLLRDILGRFGVTVHEARDVEELRALVSDRTRLVWLETPT
NPTLKVVDLRAAAKVAHAAGALVVVDNTFSTPYLTRPLEFGADLVMHSATKYLGGHGD
VIAGVVAGSTDLVAELRLHGLRHVGAVLGPFEAYLLLRGLKTLPLRMEAHCANAQALA
EALQDHPALQALHYPGLQGHPGHEVAARQMRAFGGLVSLDLGSQEAAFAFLDHLKLFT
QAVSLGDVESLSSHPASTTHQLLGEETLARQGITPGLVRLSVGIEDPEDLIRDVLGAL
EKVPVSAGR"
misc_feature complement(11830..12969)
/locus_tag="Dgeo_0011"
/note="Cys/Met metabolism PLP-dependent enzyme; Region:
Cys_Met_Meta_PP; pfam01053"
/db_xref="CDD:201574"
misc_feature complement(11830..12927)
/locus_tag="Dgeo_0011"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature complement(order(12025..12027,12259..12264,12268..12270,
12301..12303,12349..12351,12355..12357,12379..12381,
12637..12639,12646..12648,12661..12663,12730..12735,
12739..12744,12820..12822,12826..12828,12883..12888,
12892..12903))
/locus_tag="Dgeo_0011"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature complement(order(12349..12351,12376..12381,12385..12387,
12451..12453,12538..12540,12661..12663,12733..12741))
/locus_tag="Dgeo_0011"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature complement(order(12376..12381,12385..12387,12442..12444,
12451..12453,12661..12663,12733..12741))
/locus_tag="Dgeo_0011"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature complement(12376..12378)
/locus_tag="Dgeo_0011"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
gene complement(13036..13686)
/locus_tag="Dgeo_0012"
/db_xref="GeneID:4058727"
CDS complement(13036..13686)
/locus_tag="Dgeo_0012"
/note="PFAM: protein of unknown function UPF0126:
(1.4e-32);
KEGG: dra:DR2368 hypothetical protein, ev=9e-93, 79%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603485.1"
/db_xref="GI:94984121"
/db_xref="InterPro:IPR005115"
/db_xref="GeneID:4058727"
/translation="MHELEVPRVTLQTGLHVLDLLGVLAFSMSGALLAVRKRFDLFGV
LVLGCVTAVGGGAIRDTLTGQTPPLFLRDETYLWFALLGSVLAFAFGERLARFERTLS
VFDTLGLALFAASGALGALNFGLGPLGVIFAGMLSGVGGGVIRDLIANEVPEIMYRHD
QLYATAAAAGAAAVYLLHPVLTPFQTQLAGALIVMLLRWLSRRGWVRLPVRRLPGE"
misc_feature complement(13045..13644)
/locus_tag="Dgeo_0012"
/note="Predicted membrane protein [Function unknown];
Region: COG2860"
/db_xref="CDD:32687"
misc_feature complement(13417..13644)
/locus_tag="Dgeo_0012"
/note="UPF0126 domain; Region: UPF0126; pfam03458"
/db_xref="CDD:202644"
misc_feature complement(13150..>13299)
/locus_tag="Dgeo_0012"
/note="UPF0126 domain; Region: UPF0126; pfam03458"
/db_xref="CDD:202644"
gene 13862..14044
/gene="rpmF"
/locus_tag="Dgeo_0013"
/db_xref="GeneID:4058728"
CDS 13862..14044
/gene="rpmF"
/locus_tag="Dgeo_0013"
/note="some L32 proteins have zinc finger motifs
consisting of CXXC while others do not"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L32"
/protein_id="YP_603486.1"
/db_xref="GI:94984122"
/db_xref="InterPro:IPR002677"
/db_xref="GeneID:4058728"
/translation="MAKHPVPKKKTSKSKRDMRRSHHALVAPNLTECPQCHSKKLQHH
ICPSCGYYNGRQVLAV"
misc_feature 13871..14041
/gene="rpmF"
/locus_tag="Dgeo_0013"
/note="50S ribosomal protein L32; Reviewed; Region: rpmF;
PRK12286"
/db_xref="CDD:183404"
gene 14304..15089
/locus_tag="Dgeo_0014"
/db_xref="GeneID:4058729"
CDS 14304..15089
/locus_tag="Dgeo_0014"
/note="PFAM: transcriptional activator domain: (7e-05);
KEGG: sth:STH810 transcriptional regulator, ev=1e-07, 27%
identity"
/codon_start=1
/transl_table=11
/product="response regulator receiver/SARP
domain-containing protein"
/protein_id="YP_603487.1"
/db_xref="GI:94984123"
/db_xref="InterPro:IPR005158"
/db_xref="GeneID:4058729"
/translation="MTDLAPLPPTLHLRTLGDAVVTRAGQPLAWPARSAEELLWYLHA
HPDGAYRAEILADLWSLEDTPAAANRFRVALHRLRTTLGCFDAVTEVRGRFLLHPDLL
AASDTAALQAGLGAARQAGTDAERETALRRALACGAGEYLPQVRADWVEEARAYWRGV
RIQTYVALSALHCARRECALASQALLRAVDADPLIGEDHHQRLMTCLAQTRGRFEAVE
HYRRYRRYLHEEVGDTPMPDTVRLAERLKAGELLCREAEWGAR"
misc_feature 14376..>14552
/locus_tag="Dgeo_0014"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature <14718..15044
/locus_tag="Dgeo_0014"
/note="Bacterial transcriptional activator domain; Region:
BTAD; smart01043"
/db_xref="CDD:198111"
gene 15138..15407
/locus_tag="Dgeo_0015"
/db_xref="GeneID:4058730"
CDS 15138..15407
/locus_tag="Dgeo_0015"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603488.1"
/db_xref="GI:94984124"
/db_xref="InterPro:IPR000644"
/db_xref="GeneID:4058730"
/translation="MNLAALMTPSPVAVTPGHSLSVLDEDRLFGGVITTPPDRNTCEA
AHTLLHHRSGGMPVVDDGGKVNGMLTVTDRLVRGQAEDAAQESRR"
misc_feature <15231..15356
/locus_tag="Dgeo_0015"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair; cl15354"
/db_xref="CDD:210083"
gene 15559..16119
/locus_tag="Dgeo_0016"
/db_xref="GeneID:4058731"
CDS 15559..16119
/locus_tag="Dgeo_0016"
/note="PFAM: cytochrome c oxidase, subunit II: (1.1e-19);
KEGG: gka:GK1547 cytochrome c oxidase (b(o/a)3-type) chain
II, ev=2e-27, 39% identity"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase subunit II"
/protein_id="YP_603489.1"
/db_xref="GI:94984125"
/db_xref="InterPro:IPR001505"
/db_xref="InterPro:IPR002429"
/db_xref="GeneID:4058731"
/translation="MTNSPRPPGNPIPRLEHHTLERYESVWLGIAAVMAVLLFASTLA
SFISGTYPALRGEGGHHISGVTNGRLDPRNIAATPFAQPGLRENPDGSLEAFVVAKAF
AFEPAVLRVPAGRPVTFHVTSADVMHGYEVAGTNINVTAIPGQVTSFSTTFRQPGTHT
TLCNEYCGIGHHNMINRVVVEAPQAP"
misc_feature <15883..16113
/locus_tag="Dgeo_0016"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 2 [Energy production and conversion]; Region:
CyoA; COG1622"
/db_xref="CDD:31809"
misc_feature <15889..16101
/locus_tag="Dgeo_0016"
/note="Cytochrome C oxidase subunit II, periplasmic
domain; Region: COX2; cl11412"
/db_xref="CDD:209309"
gene 16130..17893
/locus_tag="Dgeo_0017"
/db_xref="GeneID:4058732"
CDS 16130..17893
/locus_tag="Dgeo_0017"
/note="PFAM: cytochrome c oxidase, subunit I: (2e-07);
KEGG: ttj:TTHA1135 ba3-type cytochrome c oxidase
polypeptide I, ev=1e-164, 52% identity"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase subunit I"
/protein_id="YP_603490.1"
/db_xref="GI:94984126"
/db_xref="InterPro:IPR000883"
/db_xref="GeneID:4058732"
/translation="MTTTPLPAPLRRADTPPVVYPIRQAPPIADAAYLASLKKVAQFY
VVTAFLALFIGVMIGPLQALNYGGINLYDHPVLKALLKSYYQGLSLHGVLNALVFTQF
FISGWMLYLPVRDLGARINMRFAWFTYLLMTAGLLMAAVPLLLNRSTLLYTFYPPMEG
DALFYIGAAVMVGSSLLVGGQVVLTWWNWKKANPGKVTPLVAFMSVATWMMWFVASLG
IILEMLGMLIPWSLGLYRGVDPLLSKTLFWWTGHAIVYFWVLPAYISWYAFIPRQAGG
RTVSEPLTRLVFVIFLLNSTPVGIHHQYADPNIFNLWKTIHMFLTFLIAVPSLLTAFS
VTASLEDAARARGGRGLLGWITRLPWGNAIFSAQVLAMISFILGGAGGIVNASSSFSP
VVHNTAWIPGHFHITVGTATTLTFMGVALWFIPHLTGKRVPSMKIASVAVWTWFVGMM
LFALGMHWEGLLGVTRRAQISAAAQDIYQAANLAVPKALTAASGIILFVSAVLYFSVL
FRMLLSRRMDNAEVTTPIPYSEAISPAGENLAAASPLVRATEPLLAYWVLAFLLVLLM
YGPVLARLLSNLQLVPGWRLY"
misc_feature 16235..17668
/locus_tag="Dgeo_0017"
/note="ba3-like heme-copper oxidase subunit I. The ba3
family of heme-copper oxidases are transmembrane protein
complexes in the respiratory chains of prokaryotes and
some archaea which catalyze the reduction of O2 and
simultaneously pump protons across the...; Region:
ba3-like_Oxidase_I; cd01660"
/db_xref="CDD:29931"
misc_feature order(16238..16240,16250..16252,16427..16432,16442..16444,
16457..16459,16511..16513,16649..16654,16775..16777,
16877..16879,16889..16891,17366..17368)
/locus_tag="Dgeo_0017"
/note="Putative D-pathway homolog; other site"
/db_xref="CDD:29931"
misc_feature 16241..17794
/locus_tag="Dgeo_0017"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 1 [Energy production and conversion]; Region:
CyoB; COG0843"
/db_xref="CDD:31185"
misc_feature order(16304..16306,16313..16315,16325..16327,16379..16381,
16400..16402,16412..16417,17339..17344,17354..17356,
17474..17476,17525..17533,17618..17620)
/locus_tag="Dgeo_0017"
/note="Low-spin heme binding site [chemical binding];
other site"
/db_xref="CDD:29931"
misc_feature order(16382..16384,16580..16582,16595..16597,16844..16846,
16958..16960,16964..16966,16976..16978,17042..17050,
17114..17116,17126..17131,17294..17296,17303..17305,
17312..17317,17516..17518,17522..17524,17528..17530,
17534..17536)
/locus_tag="Dgeo_0017"
/note="Subunit I/II interface [polypeptide binding]; other
site"
/db_xref="CDD:29931"
misc_feature order(16427..16429,16946..16948,17282..17284,17300..17302,
17336..17338,17345..17350,17357..17362,17366..17368,
17372..17374)
/locus_tag="Dgeo_0017"
/note="Putative Q-pathway; other site"
/db_xref="CDD:29931"
misc_feature order(16592..16594,16763..16765,17033..17035)
/locus_tag="Dgeo_0017"
/note="Putative alternate electron transfer pathway; other
site"
/db_xref="CDD:29931"
misc_feature order(16844..16846,16859..16864,17300..17302,17312..17317,
17525..17527)
/locus_tag="Dgeo_0017"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29931"
misc_feature order(16883..16885,17030..17035,17336..17338)
/locus_tag="Dgeo_0017"
/note="Binuclear center (active site) [active]"
/db_xref="CDD:29931"
misc_feature order(16895..16897,16916..16918,16928..16930,16967..16969,
17090..17092,17111..17113,17120..17122)
/locus_tag="Dgeo_0017"
/note="Putative K-pathway homolog; other site"
/db_xref="CDD:29931"
misc_feature order(17033..17035,17312..17317,17525..17530)
/locus_tag="Dgeo_0017"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29931"
misc_feature order(17147..17149,17276..17278,17306..17308,17510..17512,
17516..17518)
/locus_tag="Dgeo_0017"
/note="Subunit I/IIa interface [polypeptide binding];
other site"
/db_xref="CDD:29931"
misc_feature order(17339..17341,17525..17530)
/locus_tag="Dgeo_0017"
/note="Electron transfer pathway; other site"
/db_xref="CDD:29931"
gene 17893..18309
/locus_tag="Dgeo_0018"
/db_xref="GeneID:4058733"
CDS 17893..18309
/locus_tag="Dgeo_0018"
/note="PFAM: cytochrome c, class I: (6.9e-06);
KEGG: dra:DR2095 C-type cytochrome, , ev=1e-15, 47%
identity"
/codon_start=1
/transl_table=11
/product="cytochrome c, class I"
/protein_id="YP_603491.1"
/db_xref="GI:94984127"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4058733"
/translation="MQEDRFFTPREIAAALTFVVLAVLMGAGSYRTGFRMSGGNGGAA
MSASTAAAPVNGQSLYATNCAGCHGAQAQGGVGPGLGITKDWSDAAFAQAVLHGKAPE
GRNLSPVMPRFGETGLDGAPATDEQINAIHAFVKGL"
gene 18407..19438
/locus_tag="Dgeo_0019"
/db_xref="GeneID:4058734"
CDS 18407..19438
/locus_tag="Dgeo_0019"
/note="KEGG: dra:DR2285 A/G-specific adenine glycosylase,
ev=1e-128, 67% identity;
TIGRFAM: A/G-specific adenine glycosylase: (1.6e-127);
PFAM: HhH-GPD: (7.5e-26);
SMART: Iron-sulfur cluster loop: (2.2e-07)"
/codon_start=1
/transl_table=11
/product="A/G-specific adenine glycosylase"
/protein_id="YP_603492.1"
/db_xref="GI:94984128"
/db_xref="InterPro:IPR003265"
/db_xref="InterPro:IPR003651"
/db_xref="InterPro:IPR004036"
/db_xref="InterPro:IPR005760"
/db_xref="GeneID:4058734"
/translation="MVDLPLSSLRTVLLAWFDRAGRALPWRVGPEGRRDPYRVWVSEV
LLQQTQVARGRVYFERFLEAFPTVEALADAPIEAVLKAWEGCGYYARARNLHRAAGVM
AREGVPTTYDGWRALPGVGPYTAAAVASLACGEARAVNDGNVRRVLARLHGERQPTAA
WAQARADELLDPARPGACNEALMDLGATVCTPKAPQCGECPLRRWCAAFQLGDPAAFP
APKVRAAVREVRAVALLLGDAQEAVLERRAGSLLGGLMGLPTEMLEAGESKVDALTRL
AARLGATVAGELGTVTHSMTHRRVTLTVYAGGGGPARSRVTEAALSRLDHKALALWER
QQTSLFSPA"
misc_feature 18431..19204
/locus_tag="Dgeo_0019"
/note="A/G-specific adenine glycosylase; Region: mutY;
TIGR01084"
/db_xref="CDD:130156"
misc_feature 18515..18964
/locus_tag="Dgeo_0019"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(18548..18556,18563..18565,18677..18679)
/locus_tag="Dgeo_0019"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 18755..18778
/locus_tag="Dgeo_0019"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(18785..18787,18941..18943,18953..18955)
/locus_tag="Dgeo_0019"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 18827..18829
/locus_tag="Dgeo_0019"
/note="active site"
/db_xref="CDD:28938"
misc_feature 18971..19033
/locus_tag="Dgeo_0019"
/note="iron-sulpphur binding domain in DNA-(apurinic or
apyrimidinic site) lyase (subfamily of ENDO3); Region:
FES; smart00525"
/db_xref="CDD:197771"
misc_feature 19118..19432
/locus_tag="Dgeo_0019"
/note="Nudix hydrolase is a superfamily of enzymes found
in all three kingdoms of life, and it catalyzes the
hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+...; Region:
Nudix_Hydrolase; cl00447"
/db_xref="CDD:212606"
misc_feature order(19187..19195,19211..19237)
/locus_tag="Dgeo_0019"
/note="nudix motif; other site"
/db_xref="CDD:72880"
gene 19494..20324
/locus_tag="Dgeo_0020"
/db_xref="GeneID:4058735"
CDS 19494..20324
/locus_tag="Dgeo_0020"
/note="catalyzes the formation of undecaprenyl
pyrophosphate from isopentenyl pyrophosphate"
/codon_start=1
/transl_table=11
/product="undecaprenyl pyrophosphate synthase"
/protein_id="YP_603493.1"
/db_xref="GI:94984129"
/db_xref="InterPro:IPR001441"
/db_xref="GeneID:4058735"
/translation="MSREPLKVAVRTAKRTRDAARGVLLWGYEQRLAREVKAHGRLPR
HLGLILDGNRRYARALGVEREMGHEFGVDKAHEVLQWCLELGIPAVTIWVLSTDNTGR
DPAEVRHLMALFDREARNLARDPRIHANRVRVRAIGQHQGFPGNVLEALRELEEKTAE
YNGMLLNIAVGYGGREEIVDAVKQHLAEQAAAGASLEDVIAALKPEHISAHLYTAGTP
DPDFIIRTSGEIRLSGFMLWQSVYSEYYFCDVYWPGFRRVDFLRALRDFQGRERRFGK
"
misc_feature 19494..20321
/locus_tag="Dgeo_0020"
/note="undecaprenyl pyrophosphate synthase; Provisional;
Region: PRK14835"
/db_xref="CDD:184844"
misc_feature 19638..20321
/locus_tag="Dgeo_0020"
/note="Putative undecaprenyl diphosphate synthase; Region:
Prenyltransf; pfam01255"
/db_xref="CDD:201689"
misc_feature 19644..19646
/locus_tag="Dgeo_0020"
/note="catalytic residue [active]"
/db_xref="CDD:29593"
misc_feature 19647..19658
/locus_tag="Dgeo_0020"
/note="putative FPP diphosphate binding site; other site"
/db_xref="CDD:29593"
misc_feature order(19767..19781,19821..19826,19830..19838,19923..19925,
19944..19946,19989..19991,19995..19997)
/locus_tag="Dgeo_0020"
/note="putative FPP binding hydrophobic cleft; other site"
/db_xref="CDD:29593"
misc_feature order(20016..20018,20040..20042,20052..20054,20061..20063,
20088..20090,20181..20186,20193..20195,20205..20207,
20214..20216,20226..20228)
/locus_tag="Dgeo_0020"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29593"
misc_feature order(20166..20168,20184..20186)
/locus_tag="Dgeo_0020"
/note="putative IPP diphosphate binding site; other site"
/db_xref="CDD:29593"
gene 20373..22334
/locus_tag="Dgeo_0021"
/db_xref="GeneID:4058736"
CDS 20373..22334
/locus_tag="Dgeo_0021"
/note="PFAM: HRDC: (2.5e-18);
KEGG: dra:DR2444 nucleic acid-binding protein, , HRDC
family, ev=1e-141, 52% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603494.1"
/db_xref="GI:94984130"
/db_xref="InterPro:IPR002121"
/db_xref="GeneID:4058736"
/translation="MKGYWRAVDTLLATGQMWSKAEKRVTVWSRRTSPGSTFRSAWRR
CARFAAQAAAFGLCASKTRRGTTFPGLDQQQLTHATGGTPSLLHRLERLRGIAATAPT
PSVHLRPFRLRRSSCGKCGTMGGMTDSSELSRPDPRPDARLLTLHAERGDPHARLAAA
LADLEGAAWGLTLAGEAALAGQLAALLGPGVLRVDERLGVNRAALAGHGLAAATLDAD
WTGARAVWLAEPDERLLRRAERAGVPVIVDGTLAPGGGWFTRGATYVVYRDGVTLTGF
GDAPLALLFGQGAAPAPAAPAPADLTVALALRDVATLPLRLARAARTVLQLTERLGGT
ALPFGPTALLLPPDAAPDTPWRPGGVLAATRSVEGGVIFTPGLQDAETALARLRTGAA
EPVTAPRPLVRDLRASQVVETGAAAKPSLSPAVSAPRRDQGMTRPGPDLPHPDVAVPE
TPEPLNRVTFEAPGEEGEGATPGPAEPPMQEEAWTPEIVFSDHPPEIHPLPIPISDGP
DAPELDVTPPLAASEEPTPEEGQEAAAQPETTPEPQPAPAEPEPTAQTLLTLTPDLPL
TSGEDGPLDPAADLTDEQAAIYARLREWRNAEARRQEVSRFIIASNATLAEIARRVPY
TEADLKAVRGMGPERLRKYGEKILEVVRG"
misc_feature 22122..22325
/locus_tag="Dgeo_0021"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
gene complement(22331..22666)
/locus_tag="Dgeo_0022"
/db_xref="GeneID:4058737"
CDS complement(22331..22666)
/locus_tag="Dgeo_0022"
/note="KEGG: dra:DR2591 hypothetical protein, ev=9e-41,
69% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603495.1"
/db_xref="GI:94984131"
/db_xref="GeneID:4058737"
/translation="MPPKFFPTRGHLLVCQGQNCQARGSALLYKALWNHLERAALAYY
KQGGSVRLTESGCLGACSFGPALCVYRHRGGELEEGWYAAADFPLAAKVAQAVHEEAP
LPEDRKYGP"
misc_feature complement(<22448..22636)
/locus_tag="Dgeo_0022"
/note="Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd)
family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like
Fds) and proteins containing domains similar to TRX-like
Fd including formate dehydrogenases, NAD-reducing
hydrogenases and the subunit E of NADH:...; Region:
TRX_Fd_family; cd02980"
/db_xref="CDD:48529"
misc_feature complement(order(22499..22507,22628..22630,22634..22636))
/locus_tag="Dgeo_0022"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48529"
misc_feature complement(order(22484..22486,22496..22498,22607..22609,
22622..22624))
/locus_tag="Dgeo_0022"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:48529"
misc_feature complement(22337..22525)
/locus_tag="Dgeo_0022"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
gene complement(22666..23487)
/locus_tag="Dgeo_0023"
/db_xref="GeneID:4058738"
CDS complement(22666..23487)
/locus_tag="Dgeo_0023"
/note="PFAM: ABC transporter related: (2.2e-48);
SMART: ATPase: (5.8e-17);
KEGG: dra:DR2590 iron transport system ATP-binding
protein, ev=1e-101, 72% identity"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_603496.1"
/db_xref="GI:94984132"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4058738"
/translation="MTRERSAVSRQPPAIGTLEAHDLHVRAGKVPAVRGVDAVFRAGQ
FAAVIGPNGAGKSTLLRALLGLSVPEAGEVRLGGRPLSEWSRPERARTLAYLAQGEAL
PEGARVRDVVSLGRGAGEWRWGLIPSRPWTLADEEAVTEALRRTDTLRFQDRRVADLS
GGERQRVSLARALAAQPRFLLLDEPTNHLDLAYGLDVIRHARCEAAGGLGVIAVLHDL
NLAARADWLLLLHQGRVLAQGTPAEVLTPAHLHAAYGLRVRVLRDAGRLLVIPED"
misc_feature complement(22669..23436)
/locus_tag="Dgeo_0023"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:31317"
misc_feature complement(22771..23433)
/locus_tag="Dgeo_0023"
/note="ABC transporters, involved in the uptake of
siderophores, heme, and vitamin B12, are widely conserved
in bacteria and archaea. Only very few species lack
representatives of the siderophore family transporters.
The E. coli BtuCD protein is an ABC...; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:72973"
misc_feature complement(23317..23340)
/locus_tag="Dgeo_0023"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(order(22840..22842,22936..22941,23194..23196,
23314..23322,23326..23331))
/locus_tag="Dgeo_0023"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72973"
misc_feature complement(23194..23205)
/locus_tag="Dgeo_0023"
/note="Q-loop/lid; other site"
/db_xref="CDD:72973"
misc_feature complement(22984..23013)
/locus_tag="Dgeo_0023"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72973"
misc_feature complement(22936..22953)
/locus_tag="Dgeo_0023"
/note="Walker B; other site"
/db_xref="CDD:72973"
misc_feature complement(22918..22929)
/locus_tag="Dgeo_0023"
/note="D-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(22834..22854)
/locus_tag="Dgeo_0023"
/note="H-loop/switch region; other site"
/db_xref="CDD:72973"
gene complement(23480..24499)
/locus_tag="Dgeo_0024"
/db_xref="GeneID:4056991"
CDS complement(23480..24499)
/locus_tag="Dgeo_0024"
/note="PFAM: transport system permease: (3.5e-105) ABC-3:
(0.0013);
KEGG: dra:DR2589 iron transport system permease,
ev=1e-137, 79% identity"
/codon_start=1
/transl_table=11
/product="transport system permease"
/protein_id="YP_603497.1"
/db_xref="GI:94984133"
/db_xref="InterPro:IPR000522"
/db_xref="InterPro:IPR001626"
/db_xref="GeneID:4056991"
/translation="MNLEPERQALGWPGPRRLGRTAALVVLLLAVIVLAVGLGSVTIA
PGEVLGALWHGVSGAALSGNDVIVWQIRLPRVLMGVVVGACLAVCGGAFQGVFRNPLA
DPYLLGVASGAGLGATIGIVAGWPRGSIPLAALLMALAAVTVTLTLAREGRRFPPTRL
ILAGVVVGSVLSACSTFLILRGEDRARQVLAYTLGDLGFSGWRDVGTVLPYAAVGCGV
LILLGRALDTLQLGDLTARSLGVPVERLRLLVVIAASIATAAAVAYVGIIGFVGLIVP
HVVRLAWGTNHRVLLPISALLGGALLVLADLLARTTLLSQVGVVTTLLGGPFFLWLLR
REGHD"
misc_feature complement(<23495..24367)
/locus_tag="Dgeo_0024"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:182563"
misc_feature complement(23501..24223)
/locus_tag="Dgeo_0024"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(23639..23641,23660..23662,23783..23791,
23795..23812,23816..23821,23825..23833,23837..23842,
24200..24208,24218..24220))
/locus_tag="Dgeo_0024"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(23501..23503,23510..23515,23522..23524,
23531..23536,23543..23545,23690..23692,23918..23920,
23927..23932,23963..23965,23969..23974,23981..23983,
23990..23995,24002..24007,24014..24019,24023..24025,
24182..24184,24197..24199,24203..24205))
/locus_tag="Dgeo_0024"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(23570..23572,23702..23704,23714..23716,
23888..23890,23963..23965))
/locus_tag="Dgeo_0024"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(24503..25372)
/locus_tag="Dgeo_0025"
/db_xref="GeneID:4056992"
CDS complement(24503..25372)
/locus_tag="Dgeo_0025"
/note="PFAM: periplasmic binding protein: (4.1e-35);
KEGG: dra:DR2588 iron transport system substrate-binding
protein, ev=1e-122, 72% identity"
/codon_start=1
/transl_table=11
/product="periplasmic binding protein"
/protein_id="YP_603498.1"
/db_xref="GI:94984134"
/db_xref="InterPro:IPR002491"
/db_xref="GeneID:4056992"
/translation="MHKLLTLTALTLTLCATAGATRYPLTLTDDLGRQVTLRAEPRRM
VSMLPSNTETLCALGVCDRLVGVDNYSDFPQQVTRLPKLGGLYDPNVEAIVALKPDLV
VVSKYGKLAESLTQAGLTVLAVNPETYDDVLSKTLTLGRVVNREAQAKALVLNMQRDI
ARVEILTRNAVRKPTTYLEIDPTPYSVGPNSFIGVLLTKAGARNIIPASMGDFPKVDP
EFIVKANPQLMLGLDLKAARSRPGWQSIQAVKTGRVLEIPRELNTMLGRPGPRLPQAL
RGLAQLIHPELFR"
misc_feature complement(24680..25255)
/locus_tag="Dgeo_0025"
/note="Periplasmic binding protein YvrC. These proteins
are predicted to function as initial receptors in ABC
transport of metal ions in eubacteria and archaea. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct...; Region: YvrC;
cd01143"
/db_xref="CDD:29746"
misc_feature complement(24599..25240)
/locus_tag="Dgeo_0025"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:144914"
misc_feature complement(25145..25147)
/locus_tag="Dgeo_0025"
/note="putative binding site residues; other site"
/db_xref="CDD:29746"
gene complement(25679..26323)
/locus_tag="Dgeo_0026"
/db_xref="GeneID:4056993"
CDS complement(25679..26323)
/locus_tag="Dgeo_0026"
/note="PFAM: phospholipid/glycerol acyltransferase:
(3.5e-27);
KEGG: dra:DR2587 hypothetical protein, ev=1e-77, 67%
identity"
/codon_start=1
/transl_table=11
/product="phospholipid/glycerol acyltransferase"
/protein_id="YP_603499.1"
/db_xref="GI:94984135"
/db_xref="InterPro:IPR002123"
/db_xref="GeneID:4056993"
/translation="MSDARPNAAPTPAEAAKPPHVNPLVYRAVLLATSLPVVLRGEHV
EAYGREHVPPPGTPLIVAGNHRTGLDPFLIASALPPGRHLQFMAKKELFVPIIGHIIR
AGGSFPVDRSTNDLGAVRTGLRILQAGGTLGIFPEGTRGGGEMQGGVALLALKGKAPV
LPVGLSREGKRWTVRFGEPIPPSGSIKALTAIIGERIHELAQPVGTAAGRKQGG"
misc_feature complement(25688..26263)
/locus_tag="Dgeo_0026"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:30553"
misc_feature complement(25730..26215)
/locus_tag="Dgeo_0026"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature complement(order(26051..26062,26114..26116,26120..26122,
26129..26131))
/locus_tag="Dgeo_0026"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
gene complement(26392..26643)
/locus_tag="Dgeo_0027"
/db_xref="GeneID:4056994"
CDS complement(26392..26643)
/locus_tag="Dgeo_0027"
/note="KEGG: dra:DR2586 hypothetical protein, ev=3e-20,
69% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603500.1"
/db_xref="GI:94984136"
/db_xref="GeneID:4056994"
/translation="MSDTPTSLTYREAYARLSRIATELENGEADLDRVLPLLEEARAA
YAACRERIEAVRAVLAGDWTEGDWLGAEDAVDDAENPEG"
misc_feature complement(<26533..26616)
/locus_tag="Dgeo_0027"
/note="Exonuclease VII small subunit; Region:
Exonuc_VII_S; cl00750"
/db_xref="CDD:207188"
gene 26673..27367
/locus_tag="Dgeo_0028"
/pseudo
/db_xref="GeneID:4058240"
gene complement(27484..27840)
/locus_tag="Dgeo_0029"
/db_xref="GeneID:4056995"
CDS complement(27484..27840)
/locus_tag="Dgeo_0029"
/note="KEGG: dra:DR0017 hypothetical protein, ev=3e-53,
88% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603501.1"
/db_xref="GI:94984137"
/db_xref="GeneID:4056995"
/translation="MPRPLPLPFPDETEAPLVTELRFPSSGVTVRGVFELNEFATLTP
ENLEFLRLYIRVRGNLKEVERVLGLSYPTVRARFDMLLRAIGYEAELADPQAEVLERL
ERGEITPDEAARKLRR"
misc_feature complement(27487..27840)
/locus_tag="Dgeo_0029"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3877"
/db_xref="CDD:33666"
gene complement(27906..28526)
/locus_tag="Dgeo_0030"
/db_xref="GeneID:4056996"
CDS complement(27906..28526)
/locus_tag="Dgeo_0030"
/note="KEGG: dra:DR0018 hypothetical protein, ev=5e-53,
57% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603502.1"
/db_xref="GI:94984138"
/db_xref="GeneID:4056996"
/translation="MKEKVRRLLDLVRAGRLSLEDAAPLLAALHPRLALTDSDRELLA
SLLAREDLDSGQVAEHLLLLRGVRDAAQPPFPPRPPRAPGWNGVEGLVDRLTGGIDDV
VGRITEGVDRAFDGAAPRSTLRTTSARILRVEVESSSGDEYAANLPVSLAPHLAKLIP
PHGIEALEAAGLSIEALQLLIAASPPPGPLIEAEDSSGNSVRISLK"
gene complement(28523..29392)
/locus_tag="Dgeo_0031"
/db_xref="GeneID:4056997"
CDS complement(28523..29392)
/locus_tag="Dgeo_0031"
/note="KEGG: dra:DR0019 hypothetical protein, ev=2e-69,
47% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603503.1"
/db_xref="GI:94984139"
/db_xref="GeneID:4056997"
/translation="MNEHRDESFRAQVDRLVAEGKLTPEEAAGLLEGTTGETTPPDDL
PVPQTGTDSGDTPPDLRLKVSGYSLTVVHDPALSRPQLSANREDELSLTATPDGWQVR
RVHRHSGDHSPLKAILSVPFVPRNVVTQVEGGSLTLPDLGGEVRAEVNGGHVRMGRAA
SLQADVNGGNLNAADIAGPAHLTVNGGNLSLEQAASLNASVNGGNLRWAGQLTQGDHR
LEVNAGNATLHLLPGSNVHLDADVTVGAFKADFPTHRSGGFLNTRHSGQLGSGDARLS
CRVAAGQIKVVTA"
gene 29584..30993
/locus_tag="Dgeo_0032"
/db_xref="GeneID:4056998"
CDS 29584..30993
/locus_tag="Dgeo_0032"
/note="PFAM: ribonuclease II: (6e-51);
KEGG: dra:DR0020 ribonuclease II family protein, ev=0.0,
77% identity"
/codon_start=1
/transl_table=11
/product="ribonuclease II"
/protein_id="YP_603504.1"
/db_xref="GI:94984140"
/db_xref="InterPro:IPR001900"
/db_xref="GeneID:4056998"
/translation="MTAPFPALPELTPAQRAEVELVARGKQEKSRTLRDLAQPETPEA
AHALLLRLGLWDEARTPYAERLGAALTPVTLAVPDFPEEARLDLTQLPAYAIDDEGNR
DPDDAVGIEVLGGGLTRLWVHVADVAALVPAGSPLDEEARARGATLYLPDRTIGMLPD
ALVERAGLGLSEITPALSIALDLDEEGNADAVEVQLTRVRVQRLTYTQAQERLSAGEE
PFVTLARLARASRALREGEGALTIDLPEVRVKADDRGATVTPLPKPEMRAVVQECMTL
AGWAAAIYADDHGLPLPFATQDAPTRDVPGDTLPAHWARRKTLARTRFQPAPGPHHGM
GLDLYAQATSPLRRYLDLVVHQQLRAHLTGAEPLSGKDVAARVAQAQMNADATRQAER
LSRKHHTLRFVAAQPERVWDAVVVERRGPQATLLLPELALDLPFSAPVSVGTALKVRL
TDVNLPALTVRARAVENPA"
misc_feature 29836..30675
/locus_tag="Dgeo_0032"
/note="This domain is the catalytic domain of ribonuclease
II; Region: RNB; smart00955"
/db_xref="CDD:198023"
misc_feature 29836..30669
/locus_tag="Dgeo_0032"
/note="RNB domain; Region: RNB; pfam00773"
/db_xref="CDD:201436"
gene 31038..31328
/locus_tag="Dgeo_0033"
/db_xref="GeneID:4056999"
CDS 31038..31328
/locus_tag="Dgeo_0033"
/note="KEGG: dra:DR0021 hypothetical protein, ev=2e-27,
69% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603505.1"
/db_xref="GI:94984141"
/db_xref="GeneID:4056999"
/translation="MQSELFTLRAMNGVPTDIVSLRMSHCRAEHAASGAQYHLAVLYY
RECLEAAERREDCRAVEFFALKLAACYEKMGLTEKAAHFRALAGSGDLPLLG"
gene 31472..32503
/locus_tag="Dgeo_0034"
/db_xref="GeneID:4057000"
CDS 31472..32503
/locus_tag="Dgeo_0034"
/note="PFAM: Porphyromonas-type peptidyl-arginine
deiminase: (2.5e-180);
KEGG: dra:DR2359 hypothetical protein, ev=1e-154, 72%
identity"
/codon_start=1
/transl_table=11
/product="peptidyl-arginine deiminase"
/protein_id="YP_603506.1"
/db_xref="GI:94984142"
/db_xref="InterPro:IPR007466"
/db_xref="GeneID:4057000"
/translation="MPPEWAEHQATWMSWPADDDLWFGHLAAVRDEFAELVRTIARFE
PVHLLVRDEESEQDARARLAGVNVTAHRVPLDDSWIRDNGPIFLTRGQPAADDAQPPT
LSLVNWRFNAWGGKFHWEKDDRVPEYVAGWLNLPHWDRPEVLEGGGLEVNGAGVGLTT
RSCFLTPTRNPGLTEADYAALLRETLGVEKLLWLDGGLENDHTDGHIDTITRFVDPHT
IVTSVAEDKNDANYPVMQKNLADLRAMTDLHGEPFRIVELPLPARRLEGAEGRLPPTY
ANFYIGNGFVVVPLYGDPNDARALEVLRPLFPGREVIGLRSRAIIEGGGSFHCLTQQQ
PLGTPWTGR"
misc_feature 31472..32476
/locus_tag="Dgeo_0034"
/note="Porphyromonas-type peptidyl-arginine deiminase;
Region: PAD_porph; pfam04371"
/db_xref="CDD:202987"
misc_feature 31472..32476
/locus_tag="Dgeo_0034"
/note="agmatine deiminase; Region: agmatine_aguA;
TIGR03380"
/db_xref="CDD:132423"
gene 32488..33663
/locus_tag="Dgeo_0035"
/db_xref="GeneID:4057001"
CDS 32488..33663
/locus_tag="Dgeo_0035"
/note="KEGG: dra:DR2334 hypothetical protein, ev=1e-130,
62% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603507.1"
/db_xref="GI:94984143"
/db_xref="GeneID:4057001"
/translation="MDRAVIPLGDGHEARHISFGAYRDACARLEGRIFGGTWSYTFDH
PWKAPPPRGETFQWGLYQGEELIGWHHAHQRDERTVDMADTGILPEHQGRGLYSRLLP
QVLDVYRDAGYTLVTSHHRATNNRVLIPKLRAGFFLQGLNLYDGGLNVALTLSLDGTY
REAMHVRSGFRQAAGETARRLGLAIRDEAEVVGVPAPRVPLPITDGKGLDLGDGYTLW
RVPYEVYWDVYAQLEDAAYQSVSFGWAAPASRPNPDVPRYAWLISHAGEVAGWQLSRQ
WDARTAYMVNTAFLSGHRGKGLYTRLLPLVLDALRAEGYSLVRSHHHATNNAVIVPKL
RAGFCIQGLQTDEHGVMAVLIHAFDPVYREYMDVRSGLTRPGGEVARRLGLKLRPER"
misc_feature 32659..32838
/locus_tag="Dgeo_0035"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(32740..32748,32776..32781)
/locus_tag="Dgeo_0035"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
misc_feature <33217..33516
/locus_tag="Dgeo_0035"
/note="Sortase and related acyltransferases [Cell envelope
biogenesis, outer membrane]; Region: COG1247"
/db_xref="CDD:31440"
gene 33677..34561
/locus_tag="Dgeo_0036"
/db_xref="GeneID:4057002"
CDS 33677..34561
/locus_tag="Dgeo_0036"
/note="PFAM: Nitrilase/cyanide hydratase and
apolipoprotein N-acyltransferase: (4.5e-55);
KEGG: dra:DR2535 hydrolase, , ev=1e-152, 86% identity"
/codon_start=1
/transl_table=11
/product="nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase"
/protein_id="YP_603508.1"
/db_xref="GI:94984144"
/db_xref="InterPro:IPR003010"
/db_xref="GeneID:4057002"
/translation="MTQTVKLAVVQMHVTDQLEDNVSRAEAHVRDAARAGAQVILLPE
LFENLYFCQVEREDYFALAHPLEGHPFIGRFQNLAREYGVVLPLSYFERAGQAHYNSL
VCIDADGSLLGNYRKTHIPDGPGYEEKYYFNPGDTGFKVWPTRYGRVGVGICWDQWYP
ETARALMLQGADFLLYPTAIGSEPAEVESPNNHSMWQRAMQGHAVSNSTYVGAANRIG
TEVVVDLTQTYYGHSFICDYTGEIVAEFGETEEGPLLHDLNLAEARKFRAGMGFFRDR
RPDLYGPLLTTDGVTRRG"
misc_feature 33689..34534
/locus_tag="Dgeo_0036"
/note="N-carbamoylputrescine amidohydrolase (CPA) (class
11 nitrilases); Region: CPA; cd07573"
/db_xref="CDD:143597"
misc_feature 33689..34528
/locus_tag="Dgeo_0036"
/note="N-carbamoylputrescine amidase; Region:
agmatine_aguB; TIGR03381"
/db_xref="CDD:188311"
misc_feature order(33806..33808,34025..34027,34037..34039,34058..34060,
34136..34141,34145..34150,34211..34213)
/locus_tag="Dgeo_0036"
/note="putative active site; other site"
/db_xref="CDD:143597"
misc_feature order(33806..33808,34025..34027,34136..34138)
/locus_tag="Dgeo_0036"
/note="catalytic triad [active]"
/db_xref="CDD:143597"
misc_feature order(34028..34039,34055..34057,34076..34084,34139..34141,
34145..34159,34166..34171,34268..34273,34277..34285,
34289..34294,34367..34372,34496..34510)
/locus_tag="Dgeo_0036"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143597"
gene complement(34598..35398)
/locus_tag="Dgeo_0037"
/db_xref="GeneID:4057003"
CDS complement(34598..35398)
/locus_tag="Dgeo_0037"
/note="KEGG: dra:DR2290 pseudouridylate synthase I,
ev=3e-94, 68% identity;
TIGRFAM: tRNA pseudouridine synthase A: (1.7e-62);
PFAM: tRNA pseudouridine synthase: (1.4e-17)"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase A"
/protein_id="YP_603509.1"
/db_xref="GI:94984145"
/db_xref="InterPro:IPR001406"
/db_xref="GeneID:4057003"
/translation="MTTPPRFVPPHGFRRLRLLLAWDGTDFAGWQAQRDVPSVQDTLY
AALLRLTEEAARPVAAGRTDAGVHAEAMPAHVDVPQSFRIPAKKLARALNAHLPPSVA
VLEAEEAPTGFHARFSCTERRYTYRLLNTPQRHPLWRGRALHVPGALDVPAMNAAAAC
LLGTHDFAAFATREDRQTVRELRALAVHPGPVVPGGRIWEVRVAGESFLRQMVRGLVG
TLLLVGQGKLGQEDVTAVLVGRERARAGANVPGYGLTFTGASYGGFEA"
misc_feature complement(34616..35359)
/locus_tag="Dgeo_0037"
/note="tRNA pseudouridine synthase A; Validated; Region:
truA; PRK00021"
/db_xref="CDD:178798"
misc_feature complement(34616..35347)
/locus_tag="Dgeo_0037"
/note="Eukaryotic and bacterial pseudouridine synthases
similar to E. coli TruA; Region: PseudoU_synth_EcTruA;
cd02570"
/db_xref="CDD:211337"
misc_feature complement(order(35087..35110,35117..35119,35336..35338))
/locus_tag="Dgeo_0037"
/note="dimerization interface 3.5A [polypeptide binding];
other site"
/db_xref="CDD:211337"
misc_feature complement(order(34757..34759,35207..35218))
/locus_tag="Dgeo_0037"
/note="active site"
/db_xref="CDD:211337"
gene 35401..36393
/locus_tag="Dgeo_0038"
/db_xref="GeneID:4057004"
CDS 35401..36393
/locus_tag="Dgeo_0038"
/note="PFAM: Peptidoglycan-binding LysM: (7.4e-11)
peptidase M23B: (4.3e-45);
KEGG: dra:DR2291 cell wall glycyl-glycine endopeptidase, ,
ev=1e-53, 43% identity"
/codon_start=1
/transl_table=11
/product="peptidase M23B"
/protein_id="YP_603510.1"
/db_xref="GI:94984146"
/db_xref="InterPro:IPR002482"
/db_xref="InterPro:IPR002886"
/db_xref="GeneID:4057004"
/translation="MQGNVGRNFSHSARDSPVKLRIVTPVLIRCSSGKAGARRALATA
ALVLAGLASAATSYRVRPGDNLTTIAQRAGISVSALRAANPRLNNANHVEAGQLLRIP
NRQLPGQTHRVKDGENLTVIAHRYGLTLPQLLRANPQIDARRPLRAGVTLQIPGRTVA
ARLPSSEGVTPDRKSAASSAARRTPAATVRAASIRVTSAPSATGWLWPVAGYRFISSG
FGDRVLDGEHEQHYGVDIVAPPGTPVRAARGGRVLESRLDLERGWGWTVVLEHPDGWI
TRYAHLSATLVRAGEQVVQGQSVGRVGSTGRSTGPHLHFGTYLRWNPKDPLALY"
misc_feature 35572..36381
/locus_tag="Dgeo_0038"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:31082"
misc_feature 35572..>35634
/locus_tag="Dgeo_0038"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 35725..35862
/locus_tag="Dgeo_0038"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 36091..36378
/locus_tag="Dgeo_0038"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 36398..36625
/locus_tag="Dgeo_0039"
/db_xref="GeneID:4057005"
CDS 36398..36625
/locus_tag="Dgeo_0039"
/note="KEGG: dra:DR2292 hypothetical protein, ev=2e-14,
54% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603511.1"
/db_xref="GI:94984147"
/db_xref="GeneID:4057005"
/translation="MQVHYAEARGETAKAGLRAFLQVLPTLPGFVGAELLVSPDQPEL
ALIASRWEGSVPPLPVPAGVRAWVFEVLESR"
gene complement(36626..37411)
/gene="surE"
/locus_tag="Dgeo_0040"
/db_xref="GeneID:4057006"
CDS complement(36626..37411)
/gene="surE"
/locus_tag="Dgeo_0040"
/note="catalyzes the conversion of a phosphate monoester
to an alcohol and a phosphate"
/codon_start=1
/transl_table=11
/product="stationary phase survival protein SurE"
/protein_id="YP_603512.1"
/db_xref="GI:94984148"
/db_xref="InterPro:IPR002828"
/db_xref="GeneID:4057006"
/translation="MTALPSPDRPRILVANDDGIFSPGIKALALALADVGDVVVVAPD
VEQSAVGHGITIRRPLRFKHTASAGFGTLPAYRVDGTPADCVVLGVHLLGRPDLVVSG
INLGSNLGDDLTHSGTVAAAIEGLALGLPSIAFSQQGNGGGEYSFTAGAAYAARLARA
VLAKGLPPRVLLNVNFPAGLPRGVRITKVGEHRWEDSIITRHDPEGREYHWVAGQSRA
ADAHDPDTDYGAVQAGYVSVTPVRLDLTARDLLGELAGYVPEI"
misc_feature complement(36641..37384)
/gene="surE"
/locus_tag="Dgeo_0040"
/note="5'(3')-nucleotidase/polyphosphatase; Provisional;
Region: surE; PRK00346"
/db_xref="CDD:178982"
gene complement(37477..38694)
/locus_tag="Dgeo_0041"
/db_xref="GeneID:4057007"
CDS complement(37477..38694)
/locus_tag="Dgeo_0041"
/note="PFAM: Alcohol dehydrogenase, zinc-binding:
(5.1e-24) Alcohol dehydrogenase GroES-like: (1.4e-41);
KEGG: ava:Ava_C0165 zinc-containing alcohol dehydrogenase
superfamily, ev=1e-154, 65% identity"
/codon_start=1
/transl_table=11
/product="molecular chaperone GroES"
/protein_id="YP_603513.1"
/db_xref="GI:94984149"
/db_xref="InterPro:IPR000205"
/db_xref="InterPro:IPR002328"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="GeneID:4057007"
/translation="MKALVWQGINRVGVERVPDPTILQPTDAIVRVTATAICGSDLHL
LDGYIPSMVKGDILGHEFMGEVVEVGSAVRRIRVGDRVIVPFPIACGKCWYCQHGLTS
LCDNSNPNPKLAETLWGYAGAGIYGYSHITGGYAGGQAQFARTVYADANLYPVPEGLT
DEQVLFLTDILPTGYMAAEHSNIQPGDVVTVFGAGPVGLFTVMSAFLLGAGRVISIDR
FDDRLKLARQLGAETINYEADNVFERLKELTGGRGPDSVVDAVGMESHGTGLGGIYDA
VKQTTRVLETERPHALRAAIMACRKGGTVSVPGVYGGLADKIPVGALMNKGLTLRTGQ
THVHRYLDTLTQHILRGDIDPTVIITHRLSLDEAPRGYQLFKHKHDGCIKCVLDPWAD
PKEHAPTSPQPET"
misc_feature complement(37528..38694)
/locus_tag="Dgeo_0041"
/note="Glutathione-dependent formaldehyde dehydrogenase
related proteins, child 1; Region: FDH_like_1; cd08283"
/db_xref="CDD:176243"
misc_feature complement(37528..38694)
/locus_tag="Dgeo_0041"
/note="Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only]; Region: Tdh; COG1063"
/db_xref="CDD:31263"
misc_feature complement(order(37570..37572,37690..37698,37765..37773,
37822..37824,37909..37917,37987..37989,38029..38031,
38041..38049,38104..38112,38116..38121,38176..38178,
38188..38190,38437..38439,38566..38568,38575..38583))
/locus_tag="Dgeo_0041"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:176243"
misc_feature complement(order(38188..38190,38515..38517,38575..38577,
38581..38583))
/locus_tag="Dgeo_0041"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176243"
misc_feature complement(order(38383..38385,38407..38409,38416..38418,
38422..38427))
/locus_tag="Dgeo_0041"
/note="structural Zn binding site [ion binding]; other
site"
/db_xref="CDD:176243"
gene complement(38691..39425)
/locus_tag="Dgeo_0042"
/db_xref="GeneID:4057008"
CDS complement(38691..39425)
/locus_tag="Dgeo_0042"
/note="PFAM: cyclase/dehydrase: (3.6e-23);
KEGG: dra:DRA0006 hypothetical protein, ev=1e-46, 47%
identity"
/codon_start=1
/transl_table=11
/product="cyclase/dehydrase"
/protein_id="YP_603514.1"
/db_xref="GI:94984150"
/db_xref="InterPro:IPR005031"
/db_xref="GeneID:4057008"
/translation="MQQTRSLQRARFSERLLFGGLGLGLLLLSRGQSGQTRVLLGTGG
ALLLVGAVRGRGVGGSPQGLLRAPEDTITISKAVTIGLPPEELYAFWRPLKSLPRFMD
HLESVTLQGDGRSHWVAKGPAGSHVEWDAEMTEDVPGRRLAWRSLEGSQIYNEGQVDF
RAAPGDRGTEVQVTLTYRPPAGRLGASVARLLGEEPAVQIEEDLRRLKRLLEVGELPT
TEGQSSGRQTPLGKLEAKMYDNARTS"
misc_feature complement(38826..39209)
/locus_tag="Dgeo_0042"
/note="Ligand-binding SRPBCC domain of an uncharacterized
subfamily of proteins; Region: SRPBCC_8; cd07817"
/db_xref="CDD:176859"
misc_feature complement(order(38826..38834,38838..38852,38895..38897,
38901..38903,38907..38909,38913..38915,38946..38948,
38952..38954,38958..38963,38994..38996,39000..39002,
39018..39020,39027..39029,39033..39035,39069..39071,
39075..39077,39081..39083,39087..39089,39105..39107,
39150..39155,39159..39167,39192..39194,39198..39200,
39204..39206))
/locus_tag="Dgeo_0042"
/note="putative hydrophobic ligand binding site [chemical
binding]; other site"
/db_xref="CDD:176859"
gene 39684..40118
/locus_tag="Dgeo_0043"
/db_xref="GeneID:4057009"
CDS 39684..40118
/locus_tag="Dgeo_0043"
/note="PFAM: response regulator receiver: (1.3e-21);
KEGG: dra:DRA0139 response regulator, ev=8e-29, 45%
identity"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_603515.1"
/db_xref="GI:94984151"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:4057009"
/translation="MTRPLRLLLIDDSLMDRHLAEEVFADYAHLCTVTTVASGEEALA
AMLAPEATLPDVVLLDINMPGLSGFDVLKAMKAHPQLIRIPVVMLTTSSHDQDITQAY
TLHASSYLIKSVNFQDFVAQVEGFLEFWTRTRLTSWPELSSS"
misc_feature 39702..40055
/locus_tag="Dgeo_0043"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 39705..40064
/locus_tag="Dgeo_0043"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(39714..39719,39861..39863,39885..39887,39951..39953,
40008..40010,40017..40022)
/locus_tag="Dgeo_0043"
/note="active site"
/db_xref="CDD:29071"
misc_feature 39861..39863
/locus_tag="Dgeo_0043"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(39870..39875,39879..39887)
/locus_tag="Dgeo_0043"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 40017..40025
/locus_tag="Dgeo_0043"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 40286..40609
/locus_tag="Dgeo_0044"
/db_xref="GeneID:4057010"
CDS 40286..40609
/locus_tag="Dgeo_0044"
/note="KEGG: dra:DR0748a multisubunit Na+/H+ antiporter,
MnhE subunit, ev=2e-19, 61% identity"
/codon_start=1
/transl_table=11
/product="multisubunit Na+/H+ antiporter MnhE subunit-like
protein"
/protein_id="YP_603516.1"
/db_xref="GI:94984152"
/db_xref="InterPro:IPR002758"
/db_xref="GeneID:4057010"
/translation="MFGRCWAYWDSPGISWRSWCARISRWLCLQARPRLNGMIVGVPL
RLEGDVPLTLLASLTGLLPGTVALGFSPDRRVIYVHAAGMPDAQAARASVQSVERRLL
AITDA"
misc_feature <40370..40600
/locus_tag="Dgeo_0044"
/note="Na+/H+ ion antiporter subunit; Region: MNHE;
cl00807"
/db_xref="CDD:207204"
gene complement(40596..41294)
/locus_tag="Dgeo_0045"
/db_xref="GeneID:4058486"
CDS complement(40596..41294)
/locus_tag="Dgeo_0045"
/note="PFAM: Uncharacterized protein UPF0114: (2.3e-34);
KEGG: dra:DR1879 hypothetical protein, ev=3e-91, 77%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603517.1"
/db_xref="GI:94984153"
/db_xref="InterPro:IPR005134"
/db_xref="GeneID:4058486"
/translation="MTRTRSQPVSTPSKREWFSELIGRTRFVVLIAVIAVLLVAFSLF
LQGTVLALQTVYETWRDMLQPGPDGTVTALSVEFLEVVSTMLKAVVFYIIGVGLYSLF
IRPLNLTSSLGVESLSDLEQKVVSMIVVILGVTFLEHFIRWNNPQETLYFAGAFALAG
GALVFFQRVHRGQGSDLQHPEAKLRARRELFENDTEQREIREEDVQRAAQATEAKAEG
RVNADSGDGALKRP"
misc_feature complement(<40860..41246)
/locus_tag="Dgeo_0045"
/note="Predicted membrane protein [Function unknown];
Region: COG2862"
/db_xref="CDD:32689"
gene 41414..42151
/locus_tag="Dgeo_0046"
/db_xref="GeneID:4058487"
CDS 41414..42151
/locus_tag="Dgeo_0046"
/note="PFAM: polysaccharide deacetylase: (6.1e-25);
KEGG: sco:SCO6050 lipoprotein, ev=5e-43, 41% identity"
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase"
/protein_id="YP_603518.1"
/db_xref="GI:94984154"
/db_xref="InterPro:IPR002509"
/db_xref="GeneID:4058487"
/translation="MRRLGLLLAFLLSSAHGLKPSLDARGVVTHGPRTLRAVALTFDA
DMTPGMEAELRRGQVRSFYDAGVVQALENTHTPATFFLTGMWAQVYAQQARALAQSPE
FEIENHSYDHPGFSQPCYGLKPVSQTRKAAEIERAQHAIEAVTGVTPRYFCFPGGCAA
EADVQLAEAQGLQVVHWDVVGGDVNQPDPERITRQVLERVRPGSIVVLHVSGGHAPAT
GQALPAIIASLKARGYTLVTVQHLLGH"
misc_feature 41519..42136
/locus_tag="Dgeo_0046"
/note="Putative catalytic NodB homology domain of
uncharacterized BH0857 protein from Bacillus halodurans
and its bacterial homologs; Region: CE4_BH0857_like;
cd10955"
/db_xref="CDD:200579"
misc_feature order(41534..41545,41735..41740,41747..41752,41870..41872,
41876..41881,41942..41944,41960..41965,42032..42034,
42038..42040)
/locus_tag="Dgeo_0046"
/note="NodB motif; other site"
/db_xref="CDD:200579"
misc_feature order(41540..41545,41735..41737,41747..41749,41876..41884,
41942..41944,42032..42034,42038..42040)
/locus_tag="Dgeo_0046"
/note="putative active site [active]"
/db_xref="CDD:200579"
misc_feature order(41540..41542,41870..41872,41960..41962,42038..42040)
/locus_tag="Dgeo_0046"
/note="putative catalytic site [active]"
/db_xref="CDD:200579"
gene complement(42215..42886)
/locus_tag="Dgeo_0047"
/db_xref="GeneID:4058488"
CDS complement(42215..42886)
/locus_tag="Dgeo_0047"
/note="KEGG: dra:DR0003 hypothetical protein, ev=1e-28,
39% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603519.1"
/db_xref="GI:94984155"
/db_xref="GeneID:4058488"
/translation="MQPQDRGIAVHPLLADGAGGGGIQIGQAQQFIGPQAVAGLPHSA
LAPNGGGVGAQHAAVADAAQLSVHRPLAAVPRNGTYQLAAGAGAFQTGGQPAPRFRIR
VAFCDLCGQAHITGQRTRQQRLRSPAPAPGFGRVDHKGEPRELIRRERRFWPHAKVAL
GAAQVVRCGKGGPVLRQGHAQSLQGSRGMQQTIRAGGQPLRAEFKRDGRGLHAYILAY
FTLKT"
gene 43033..44091
/locus_tag="Dgeo_0048"
/db_xref="GeneID:4058489"
CDS 43033..44091
/locus_tag="Dgeo_0048"
/note="PFAM: permease YjgP/YjgQ: (6.9e-47);
KEGG: dra:DR2430 hypothetical protein, ev=1e-108, 56%
identity"
/codon_start=1
/transl_table=11
/product="permease YjgP/YjgQ"
/protein_id="YP_603520.1"
/db_xref="GI:94984156"
/db_xref="InterPro:IPR005495"
/db_xref="GeneID:4058489"
/translation="MPRVPFTLTRSVLREVLRWYAAGVALFLILQLTDALSTTVGVLL
LYHATPLEALSVFGAIAPDKLNRSLVLAVPFAVLLTFGRLQGDSELKAMFAAGVSPLR
LVWPLAVPFVLVGVLAFVNTGYVVPGGLARWDRAWYTIYGTVPPAPSQDNYTFAPPGA
LFYAGRVRNGAESGVAQLDGVLIERGGETVTAQSGIWDTQARTWTVSDAWITRPGQDP
RQVAGPLVFPQTDTLRPPQPPAAQVSTPVLRARLAADEYATPEQRRVDEHQLATRYAD
PCTPIVFALVAGVVGLLLRNRAGAFAATLLVILVFYVLWTTAPQLARVGALPPTLAAW
LPNIVFFLVAAALAWRLR"
misc_feature 43051..44088
/locus_tag="Dgeo_0048"
/note="Predicted permeases [General function prediction
only]; Region: COG0795"
/db_xref="CDD:31138"
misc_feature 43060..44082
/locus_tag="Dgeo_0048"
/note="Predicted permease YjgP/YjgQ family; Region:
YjgP_YjgQ; pfam03739"
/db_xref="CDD:202752"
gene 44102..45205
/locus_tag="Dgeo_0049"
/db_xref="GeneID:4058490"
CDS 44102..45205
/locus_tag="Dgeo_0049"
/note="PFAM: permease YjgP/YjgQ: (2.9e-60);
KEGG: dra:DR2431 hypothetical protein, ev=1e-132, 69%
identity"
/codon_start=1
/transl_table=11
/product="permease YjgP/YjgQ"
/protein_id="YP_603521.1"
/db_xref="GI:94984157"
/db_xref="InterPro:IPR005495"
/db_xref="GeneID:4058490"
/translation="MKRFERYVLAEILPPLVGALGVVIVLLLLALLEGVIAPLLAKGA
NPLLVARLVALNVPEALAQGLPIALMFAALLGLSRLAADSEIKAALASGVPTSRLFRP
VLLLAALVTLGTFAINELLVTRAKVQVQSVQREIVLDNPRVIGLGTRDGQGNLVLRDA
LNRAISVGEALPGGELRDLRIVTMQAGLPPREVITARRGRLKPGSNVLELEDGQRITF
QDARPVTVLTFARGSLPVQDVQASFEGGDATLKPIYLPLRELLARMQTYRQQKVQAPA
DFTALHRKFAEPLAALALAFFVVSLAVFAFRSGQNLGLVWALLLSFAYYATWSVFRVM
GENGAVPPVLAAYAPDLIAVLAGLLLLWRASRR"
misc_feature 44222..45148
/locus_tag="Dgeo_0049"
/note="Predicted permeases [General function prediction
only]; Region: COG0795"
/db_xref="CDD:31138"
misc_feature 44225..45148
/locus_tag="Dgeo_0049"
/note="Predicted permease YjgP/YjgQ family; Region:
YjgP_YjgQ; pfam03739"
/db_xref="CDD:202752"
gene 45266..46681
/locus_tag="Dgeo_0050"
/db_xref="GeneID:4058491"
CDS 45266..46681
/locus_tag="Dgeo_0050"
/note="PFAM: Cyclopropane-fatty-acyl-phospholipid
synthase: (8.8e-122) Methyltransferase type 11: (6.2e-16)
Methyltransferase type 12: (1.3e-16);
KEGG: dra:DR2187 cyclopropane-fatty-acyl-phospholipid
synthase, , ev=1e-170, 66% identity"
/codon_start=1
/transl_table=11
/product="cyclopropane-fatty-acyl-phospholipid synthase"
/protein_id="YP_603522.1"
/db_xref="GI:94984158"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR001601"
/db_xref="InterPro:IPR003333"
/db_xref="InterPro:IPR005829"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4058491"
/translation="MSASSRSGRPGTVRSPSGPQVAWLAAGLTAAALAARQVRRSAAT
PEQLRTAALDVLEAALPQQRTFDVQLWDGTVLPATVSPATARVILNSEHALGRMLRLP
LDLALGEAYLRGDFEIEGDVSVVAGITEAFDKPLSTAQVVRLLGEVQLLRRHAGPAPH
PVTAQLHGNPHTRERDQQAITYHYDISNDFYRLWLDQRMVYSCGYFPTGVETLDQAQE
AKLEHICRKLRLTQGERLLDIGCGWGGLAIYAAQHYGVEVLGVTLSEAQLREGRARVE
AAGLRDRVRLELRDYRDVEGQFDKISSVGMAEHVGRRNMPEYFATAYRVLKPGGLMMN
HAIAAGIQPSKLPQWVQVLASGNFSQKYVFPDGELLPLWETLQHAERAGFEVRDVENL
REHYARTLAFWSHNLEAHRDEARALVGEQRFRLWRLYLAACVNYFRGGQLAIFQSLLA
KPDAAGRVRVPLSRADLYREE"
misc_feature 45770..46618
/locus_tag="Dgeo_0050"
/note="Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane]; Region: Cfa; COG2230"
/db_xref="CDD:32411"
misc_feature 45968..46264
/locus_tag="Dgeo_0050"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(45980..46000,46049..46054,46130..46138,46175..46177)
/locus_tag="Dgeo_0050"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(46701..48812)
/locus_tag="Dgeo_0051"
/db_xref="GeneID:4058492"
CDS complement(46701..48812)
/locus_tag="Dgeo_0051"
/note="catalyzes the synthesis of acetylphosphate or
propionylphosphate from acetyl-CoA or propionyl-CoA and
inorganic phosphate; when using propionyl-CoA the enzyme
is functioning in the anaerobic pathway catabolizing
threonine to propionate"
/codon_start=1
/transl_table=11
/product="phosphate acetyltransferase"
/protein_id="YP_603523.1"
/db_xref="GI:94984159"
/db_xref="InterPro:IPR001395"
/db_xref="InterPro:IPR002505"
/db_xref="InterPro:IPR004614"
/db_xref="InterPro:IPR010766"
/db_xref="GeneID:4058492"
/translation="MKTLFIAPTRNGVGLTSTALGLLRALERQGLKVAFLKPIAQTHE
AAPDDSVHWARTLAHAVTPDPILLSVAEEQLSQGQEEELMENVVALAREAAAGVTGGA
DVLVVEGLALNERNVYAGPLNASLARNLEADVVLVSSLAGVTPATLADELEIAAQAYR
RSDGSGLAGYVLNFAPLELDFGGLLADLRARSRILASGELPLLGVIAQSPTLAAPRTL
DVARHLGAEVLNEGEARLRRVTSTVVTARSVPKMADLFTSGALVVTPGDREDVVMAAA
LSHLSGVPLAGLLFTSGSTPEAAIERLCRAALTSTLPVLRVETNSYNTASRLSRMEAR
VPHDDLERMERTLDFIADRLDTVPLGTRLRAPEGSERRLPPSAFRYELIQKARAANKR
IVLPEGDEPRTVRAAIRCVEKGIARCVLLAQPEKVRQVAEGQGLTLPDGLEIIDPDRV
RANYVAPMVELRKHKGLTAPQAEAQLEDNVVLGTMMLALDEVDGLVSGAVHTTANTVR
PALQLIKTAPGVRLVSSIFFMLMPEQVVVYGDAAINPNPNAEELADIAIQSADSARAF
GIPPRIAMLSYSTGESGAGADVEKVRIATRLVRERRPDLPVDGPLQYDAASVLSVGRQ
KAPNSPVAGRATVFIFPDLNTGNTTYKAVQRAAGVVAVGPMLQGLRKPVNDLSRGALV
DDIVYTIALTAIQATQAREGA"
misc_feature complement(46752..48812)
/locus_tag="Dgeo_0051"
/note="phosphate acetyltransferase; Reviewed; Region:
PRK05632"
/db_xref="CDD:180175"
misc_feature complement(48165..48812)
/locus_tag="Dgeo_0051"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(47820..48158)
/locus_tag="Dgeo_0051"
/note="DRTGG domain; Region: DRTGG; pfam07085"
/db_xref="CDD:203577"
misc_feature complement(46755..47672)
/locus_tag="Dgeo_0051"
/note="phosphotransacetylase; Reviewed; Region: eutD;
PRK09653"
/db_xref="CDD:182020"
gene complement(48809..49996)
/locus_tag="Dgeo_0052"
/db_xref="GeneID:4058493"
CDS complement(48809..49996)
/locus_tag="Dgeo_0052"
/note="AckA utilizes acetate and can acetylate CheY which
increases signal strength during flagellar rotation;
utilizes magnesium and ATP; also involved in conversion of
acetate to aceyl-CoA"
/codon_start=1
/transl_table=11
/product="acetate kinase"
/protein_id="YP_603524.1"
/db_xref="GI:94984160"
/db_xref="InterPro:IPR000890"
/db_xref="InterPro:IPR004372"
/db_xref="GeneID:4058493"
/translation="MWTLVVNCGSSSLKFALLNPATGETPLTGLAERLGSDLAAVRVD
RGEERGTVPLPQGSYSEAFGVLLAELDALGLRQEVRAVGHRVVHGGDRFNAPVRITPE
VLEVIRTCIPLAPLHNPANLAGIEAALAAFPELPQVAVFDTAFHQSMPPVAYRYAVPT
VWYTCYGVRRYGFHGISHAYVAEEAARLLARDLTDLSLVTAHLGNGCSVTAVQGGRSL
DTSMGLTPLEGLVMGTRSGDVDPGLPDYLAREAGLTLAEITAALNRESGLLGLSGLTN
DMRELEAAAAGGNTNAQLALEIFVYRLAKTIAGMATVLGRLDALVFTGGIGENSATVR
AATLARLGLLGFQLDAAANAQAVRGQGGVITSGGVPALVVNTNEERMIARETARAVKG
APA"
misc_feature complement(48821..49996)
/locus_tag="Dgeo_0052"
/note="acetate kinase A/propionate kinase 2; Reviewed;
Region: PRK00180"
/db_xref="CDD:178918"
misc_feature complement(48833..49987)
/locus_tag="Dgeo_0052"
/note="acetate kinase; Region: ackA; TIGR00016"
/db_xref="CDD:161665"
gene complement(50064..50513)
/locus_tag="Dgeo_0053"
/db_xref="GeneID:4058494"
CDS complement(50064..50513)
/locus_tag="Dgeo_0053"
/note="PFAM: protein of unknown function UPF0079:
(5.3e-30);
KEGG: dra:DR2351 hypothetical protein, ev=3e-59, 79%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603525.1"
/db_xref="GI:94984161"
/db_xref="InterPro:IPR003442"
/db_xref="GeneID:4058494"
/translation="MTAPDLPLHAGETRLLHGPDEQRALGAALAQTLPPGTVLFLEGE
LGAGKTTLTSGLVTALGFADAVTSPTYALMHVYPAAAGRVLHVDAYRVRDVAELYEMD
LEALVAGSRLTVIEWGEGLYADYPDAPILLLEHVPGDPEVRRITRRR"
misc_feature complement(50070..50477)
/locus_tag="Dgeo_0053"
/note="Predicted ATPase or kinase [General function
prediction only]; Region: COG0802"
/db_xref="CDD:31145"
gene complement(50524..52458)
/locus_tag="Dgeo_0054"
/db_xref="GeneID:4058495"
CDS complement(50524..52458)
/locus_tag="Dgeo_0054"
/note="KEGG: dra:DR2350 hypothetical protein, ev=3e-98,
52% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603526.1"
/db_xref="GI:94984162"
/db_xref="GeneID:4058495"
/translation="MTAAPNPSEPLHRLPVRLLGDLISPRALERILQDAAQARGRTPE
TLDAPTLEDILKREVFKRLQLSVPAALAKRRVSDVIKEVLAATPAPQTPRSGEQSLEV
LEEGARRFTLYFDWPETQRLRGVLGVARQQQQAGQDITALVREGQDLINLMERRLQEG
LVTQAQDLAELQAAYQRVQSMGGKDVRRLEGLIAQIKEAQSQGVLLPAEVERARTITF
TLRKLLESSVVQPLESGKAPPLLDPEAQARVLALEQEHVARQLADLAREFGPLVRARP
ELETRLQIIRSQHASGTLKAETVDLWRAELEATRDLVLASQREELAGLEARLAALPES
PELAEARTALNVARLTLAGGGLATDELRDLGGTLAALEAAPALAARLLAGQRELAEVE
RAARDVPGASAELAPQLAAAREALARGEDVEIDALWAALERRMGQAAQQRQDFDARAD
FVIREYDTVRHLAGETIQRLGRLADTLRAQRRLGPMSADARERYAQTLADAEALLTEA
RAEYQAAQEVTASFGAEALSGLLDVFDFGGDPAGDLFGAAAPTEQMPDAAGLPDDTWL
IRGRTVVAGRTDPAVSGIAALLEQAALLDVRVLRFEDPQGAWAARQDGGGGWRLARGP
NAASLEDRVGDWLASGELRR"
gene complement(52487..54076)
/locus_tag="Dgeo_0055"
/db_xref="GeneID:4058496"
CDS complement(52487..54076)
/locus_tag="Dgeo_0055"
/note="KEGG: dra:DR2348 hypothetical protein, ev=1e-118,
47% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603527.1"
/db_xref="GI:94984163"
/db_xref="GeneID:4058496"
/translation="MNRASTLFLLATLAVGTAGAQDLSAYRTLAGSLEAAAQARPTSA
ERALAELDRAETAYAQLAPTLQNKQLLGGLRDTLDSARAALARTPAELQAQVLLARGL
MRKALYNQTLTQLAHTPPDLSPAAGTAQMKLLAQDFGLTGAPAAALLQDAQAGHLERV
AWRLQRAAAQKVSGALQATPAQRSPEAYLNLARATSWFTVVQDAGVSALKVAQFESAL
QQLTEGDLPALTASLKTLRQGAAALNQAFAAPPTVARSATQTSSPSPAQPSTTPGAAA
PAQAPVAATASGGMTASGGVDVAYAALGRALTAAGHSDPETARAELVRVSAALATFPA
ALRTTAGYETFVRDLSATQERRGLRPGDVQALIAELGGLERSLAGGGRSTVDVLSAAV
ARTFNGGLRAVVFLLLALLGLVPLYLLNLAFGGRNPYWRAITAALALLLLPVFLEGVF
GFLGWVGDLSGLALLRAAPSLTLWQGVYGLPLRALFTALAIGLAAYGFRGLCVQFGLL
GRSSAGSMTAQPSLDWDEEPT"
gene complement(54073..54783)
/locus_tag="Dgeo_0056"
/db_xref="GeneID:4058497"
CDS complement(54073..54783)
/locus_tag="Dgeo_0056"
/note="PFAM: Roadblock/LC7: (3.3e-05);
KEGG: dra:DR2347 hypothetical protein, ev=3e-61, 50%
identity"
/codon_start=1
/transl_table=11
/product="roadblock/LC7 domain-contain protein"
/protein_id="YP_603528.1"
/db_xref="GI:94984164"
/db_xref="InterPro:IPR004942"
/db_xref="GeneID:4058497"
/translation="MTNAVYTLIVRALSGIVSERAAETLLRAALREQGLTAEGVTAGE
MQRVLSGPLLTRLSGVLPPERARAELGNLAAQLQKHYPKAPTLFSSPAATWDETTSTH
WEDIDFSADDFEFDDPEYTATPPERQYALGTAAGQEALIQDLGRIPGVQGVMVCRASG
EVLRERALSGSRNLSSVIAATALLFQKRALNLMSADMGGQTVCMRPVGAYCVAVVAGP
QVNIGRLLAELQQVREAA"
misc_feature complement(54139..54375)
/locus_tag="Dgeo_0056"
/note="Roadblock/LC7 domain; Region: Robl_LC7; smart00960"
/db_xref="CDD:198028"
gene 54859..56049
/locus_tag="Dgeo_0057"
/db_xref="GeneID:4058498"
CDS 54859..56049
/locus_tag="Dgeo_0057"
/note="KEGG: dra:DR2346 glycine C-acetyltransferase,
ev=0.0, 83% identity;
TIGRFAM: Pyridoxal phosphate-dependent acyltransferase, :
(1.3e-283);
PFAM: aminotransferase, class I and II: (4.5e-74)"
/codon_start=1
/transl_table=11
/product="pyridoxal phosphate-dependent acyltransferase"
/protein_id="YP_603529.1"
/db_xref="GI:94984165"
/db_xref="InterPro:IPR001917"
/db_xref="InterPro:IPR004839"
/db_xref="InterPro:IPR010962"
/db_xref="GeneID:4058498"
/translation="MAISLSDRLEAELSKLRESGLLIHPRVLEAPQRARTRVDGRAVV
NLASNNYLGFADHPEVKARAEQSLREWGAGAGAVRTIAGTLRIHEDFEQQLADFKHTG
SALVLQSGFTTNQGVLGTLLQEGDLVVSDELNHASIIDGLRLTKATKKIYRHADPEDL
DRVLAEHDTDGLKLVVTDGVFSMDGDIAPLDRLIEVARKYGAVTYVDDAHGSGVLGEA
GRGTVHHFGYEHADDVIQVGTLSKAWGAVGGYAAGHPNLRELLINRARPYLFSTAHPP
AVVGALSAALELVQRDASFMERLWENTRYFKAELARLGFDTMGSQTPITPVLFGEAGA
AFEASRRLLDEGVFAVGLGFPTVPRGQARIRNIVTAEHTREDLDQALAAYERVGRALG
VIGT"
misc_feature 54883..56040
/locus_tag="Dgeo_0057"
/note="pyridoxal phosphate-dependent acyltransferase,
putative; Region: gly_Cac_T_rel; TIGR01825"
/db_xref="CDD:130884"
misc_feature 54979..56022
/locus_tag="Dgeo_0057"
/note="KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS); Region: KBL_like;
cd06454"
/db_xref="CDD:99747"
misc_feature order(55003..55005,55183..55191,55261..55263,55390..55392,
55402..55407,55477..55479,55483..55488,55573..55575,
55582..55584,55951..55953)
/locus_tag="Dgeo_0057"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99747"
misc_feature order(55183..55191,55261..55263,55390..55392,55402..55404,
55477..55479,55483..55488,55573..55575,55582..55584)
/locus_tag="Dgeo_0057"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99747"
misc_feature 55582..55584
/locus_tag="Dgeo_0057"
/note="catalytic residue [active]"
/db_xref="CDD:99747"
gene 56125..56844
/locus_tag="Dgeo_0058"
/db_xref="GeneID:4058499"
CDS 56125..56844
/locus_tag="Dgeo_0058"
/note="TIGRFAM: ubiquinone/menaquinone biosynthesis
methyltransferases: (2.3e-116);
PFAM: RNA methylase: (0.0062) UbiE/COQ5
methyltransferase: (3.7e-48) Methyltransferase type 11:
(5.7e-34) Methyltransferase type 12: (2.5e-18);
KEGG: dra:DR2405 ubiquinone/menaquinone biosynthesis
methyltransferase, ev=1e-104, 78% identity"
/codon_start=1
/transl_table=11
/product="UDP-3-O-(3-hydroxymyristoyl) glucosamine
N-acyltransferase LpxD"
/protein_id="YP_603530.1"
/db_xref="GI:94984166"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR000241"
/db_xref="InterPro:IPR001601"
/db_xref="InterPro:IPR004033"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4058499"
/translation="MTTRPPVGDKQDKGRVVQAMFASIAPRYDLLNRVLSLGVDRLWR
REAAREALALNPQRLLDVATGTGDFALELKDRAPQAEVVGTDFVPEMLDRAREKARAR
HLDLRLQEGDALDLPYPDGAFDAVTCAFGFRNFADYERGLAEMWRVLAPGGRVVILDF
PPPRSGLFGSVFRFYFRQVLPRIGAWVSGNAGAYTYLPESTLAFLPPERLAGLMHATG
FRTRFRLLTFGIAALHVGDKL"
misc_feature 56149..56841
/locus_tag="Dgeo_0058"
/note="Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
/db_xref="CDD:32408"
misc_feature 56296..56595
/locus_tag="Dgeo_0058"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(56308..56328,56380..56385,56455..56463,56509..56511)
/locus_tag="Dgeo_0058"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 57092..58465
/locus_tag="Dgeo_0059"
/db_xref="GeneID:4058500"
CDS 57092..58465
/locus_tag="Dgeo_0059"
/note="PFAM: glycosyl transferase, family 20: (1.8e-186);
KEGG: sru:SRU_0569 trehalose-6-phosphate synthase domain,
, ev=1e-117, 47% identity"
/codon_start=1
/transl_table=11
/product="alpha,alpha-trehalose-phosphate synthase"
/protein_id="YP_603531.1"
/db_xref="GI:94984167"
/db_xref="InterPro:IPR001830"
/db_xref="GeneID:4058500"
/translation="MGLIVVSNREPYAPKRGEAGQLAWVPSIGGLTAALDPALQRSGG
TWIAWGEERPEVGEVDLPQGAPRYRLKRLRLSEAEVRDFYYGFANRALWPMSHYFIGR
ATYQTSTWRTYVNVNRRFAQAAVESFRTGDLIWVHDYQLALVPRLIREALPGARIGFF
WHIPWPSTEVFRTLPWDRELLEGLLGADLIGMHTDEYVAHFLSACRRVLGAETEGNTV
RWQGRESRVVARPIGIEVETYEALAANPEVEEAADRIRRTLQTQILLGVDRLDYTKGI
PERLEAFDAFLDRYPEARRRVTLLQIAVPSRERVESYRQLRAQVEGLVGRINGKHTRD
GWSPVQYIYRGVPREELVAHYRAADVMLVTPLRDGLNLVAKEFVASSRDGVLILSRFA
GAADELPEALQVNPYNVDGLAEALLEALRMPLDEKKARLQRLRERLRQSDLHAWAEGF
LRELAGT"
misc_feature 57095..58456
/locus_tag="Dgeo_0059"
/note="alpha,alpha-trehalose-phosphate synthase
[UDP-forming]; Region: trehalose_OtsA; TIGR02400"
/db_xref="CDD:162840"
misc_feature 57098..58456
/locus_tag="Dgeo_0059"
/note="Trehalose-6-Phosphate Synthase (TPS) is a
glycosyltransferase that catalyses the synthesis of
alpha,alpha-1,1-trehalose-6-phosphate from
glucose-6-phosphate using a UDP-glucose donor. It is a key
enzyme in the trehalose synthesis pathway. Trehalose is
a...; Region: GT1_TPS; cd03788"
/db_xref="CDD:99963"
misc_feature order(57116..57118,57176..57181,57341..57343,57503..57505,
57509..57511,57575..57577,57896..57898,57911..57913,
58142..58144,58205..58210,58217..58219)
/locus_tag="Dgeo_0059"
/note="active site"
/db_xref="CDD:99963"
misc_feature 57875..57901
/locus_tag="Dgeo_0059"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:99963"
gene 58462..59178
/locus_tag="Dgeo_0060"
/db_xref="GeneID:4058501"
CDS 58462..59178
/locus_tag="Dgeo_0060"
/note="TIGRFAM: HAD-superfamily hydrolase subfamily IIB:
(1.3e-12);
PFAM: trehalose-phosphatase: (9.1e-34);
KEGG: ttj:TTHA0479 trehalose-6-phosphate phosphatase,
ev=3e-40, 48% identity"
/codon_start=1
/transl_table=11
/product="HAD family hydrolase"
/protein_id="YP_603532.1"
/db_xref="GI:94984168"
/db_xref="InterPro:IPR003337"
/db_xref="InterPro:IPR006379"
/db_xref="GeneID:4058501"
/translation="MTPPPELLSLGERALLVLCDYDGTLAPIVPRPEDAFPEPGAREA
LGRLIAHPAHHVAVVTGRRAEQVRAFLDLPDLPVVGLHGMEWPGEALRPPDEDALRLI
AAQLPDLPGLRLEDKRWTLAVHYRAVPENQQADVEAALAAVTLPAGWEVIAGKKVREF
RPAGFGKGRAAQQLALTFPLHLPVFLGDDVTDEEGFVALREQGGVTVKVGEGATAAEY
RVAGPAEVVTLLRTWADMLG"
misc_feature 58507..59076
/locus_tag="Dgeo_0060"
/note="HAD-superfamily hydrolase, subfamily IIB; Region:
HAD-SF-IIB; TIGR01484"
/db_xref="CDD:162385"
misc_feature 58507..>58695
/locus_tag="Dgeo_0060"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature order(58519..58527,58639..58644)
/locus_tag="Dgeo_0060"
/note="active site"
/db_xref="CDD:119389"
misc_feature 58519..58536
/locus_tag="Dgeo_0060"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 58639..58641
/locus_tag="Dgeo_0060"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 59257..59499
/locus_tag="Dgeo_0061"
/db_xref="GeneID:4058502"
CDS 59257..59499
/locus_tag="Dgeo_0061"
/note="KEGG: dra:DR2559 hypothetical protein, ev=3e-18,
54% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603533.1"
/db_xref="GI:94984169"
/db_xref="GeneID:4058502"
/translation="MSVLSRFALLLGVVLLLVAVFLLVKNVIDINQLHAVANANRSKD
FPSPTNNVLLMTGFTLAGGFLAGLGLGLPRGRQRPH"
gene 59640..60263
/locus_tag="Dgeo_0062"
/db_xref="GeneID:4058503"
CDS 59640..60263
/locus_tag="Dgeo_0062"
/note="PFAM: Phosphoglycerate mutase: (4e-46);
KEGG: dra:DR0278 phosphoglycerate mutase, ev=1e-55, 58%
identity"
/codon_start=1
/transl_table=11
/product="phosphoglycerate mutase"
/protein_id="YP_603534.1"
/db_xref="GI:94984170"
/db_xref="InterPro:IPR013078"
/db_xref="GeneID:4058503"
/translation="MSQATPAPLRLTLVRHAATAWNEGGRWQGLTDNPIGPNGEAQAR
ALGARLRPPYSRVYSSHLLRAVQTADLALPGFPLTLDERLREYDLGELEGLTVGEMRG
HAGFAHWQADPWNHPAPGGESLSAVAARMREWAEALPDGGRVLAFSHSIAIRSLLVGL
FGLPLVPQQNYPIPFRERIGHTETVELERWNGEWRRVETEVAHPHFR"
misc_feature 59667..>59897
/locus_tag="Dgeo_0062"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature order(59682..59687,59829..59831)
/locus_tag="Dgeo_0062"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene complement(60394..61812)
/locus_tag="Dgeo_0063"
/db_xref="GeneID:4058504"
CDS complement(60394..61812)
/locus_tag="Dgeo_0063"
/note="TIGRFAM: amidophosphoribosyltransferase:
(1.5e-253);
PFAM: glutamine amidotransferase, class-II: (4.1e-24)
phosphoribosyltransferase: (9.4e-13);
KEGG: dra:DR0220 amidophosphoribosyltransferase, ev=0.0,
89% identity"
/codon_start=1
/transl_table=11
/product="amidophosphoribosyltransferase"
/protein_id="YP_603535.1"
/db_xref="GI:94984171"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR002375"
/db_xref="InterPro:IPR005854"
/db_xref="GeneID:4058504"
/translation="MIFDPATDKPQDECGVFGLYSPQPQDLAWLTYLGLFALQHRGQE
AAGMCVSDGEKFHVDKDLGLVSQVFDERRLDGLRLPNARVSIGHVRYSTTGSNLRFNA
QPLTTRTNKGILGLAHNGNFVNAREVRSGMLLEGALFQTTNDSEVMLNLIARESHMDL
VEATASAMRKLKGGYACVLMSRHTLLGFRDPHGVRPLVIGQRNDGAWVLASEPCALYA
VGARLLRDVQPGELVWFDREGLHSLLVEVKTPTPCSFEWIYFARSDGELDGVDIHESR
LRMGAQLAREKPVDADLVVPVPDSGIGAAIGYARESGIPFDYGLYKNPYAGRTFIAPT
QEARELKVKMKLSPTSAVRGRRVVLVDDSIVRGTTSRQIVNLLREAGAREVHFRVSSP
PITHPCFYGIDTAARKELVASTHSVEEIRELIGADTLAFISERGLREAIGGPGLCSAC
FTGDYPAGTPLLNDVDKLALEV"
misc_feature complement(60445..61773)
/locus_tag="Dgeo_0063"
/note="amidophosphoribosyltransferase; Region: purF;
TIGR01134"
/db_xref="CDD:162218"
misc_feature complement(61009..61773)
/locus_tag="Dgeo_0063"
/note="Glutamine amidotransferases class-II (GN-AT)_GPAT-
type. This domain is found at the N-terminus of glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase) . The glutaminase domain catalyzes amide
nitrogen transfer from glutamine to the...; Region:
GPATase_N; cd00715"
/db_xref="CDD:48479"
misc_feature complement(order(61381..61383,61453..61458,61543..61545,
61687..61692,61771..61773))
/locus_tag="Dgeo_0063"
/note="active site"
/db_xref="CDD:48479"
misc_feature complement(order(61351..61356,61363..61368,61375..61377,
61492..61494,61684..61686,61705..61707,61714..61719))
/locus_tag="Dgeo_0063"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:48479"
misc_feature complement(60571..60972)
/locus_tag="Dgeo_0063"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(60631..60633,60706..60720,60724..60732,
60913..60915,60919..60921))
/locus_tag="Dgeo_0063"
/note="active site"
/db_xref="CDD:206754"
gene complement(61809..64049)
/locus_tag="Dgeo_0064"
/db_xref="GeneID:4058505"
CDS complement(61809..64049)
/locus_tag="Dgeo_0064"
/note="catalyzes the formation of
2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from
N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and
L-glutamine in purine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine synthase II"
/protein_id="YP_603536.1"
/db_xref="GI:94984172"
/db_xref="InterPro:IPR000728"
/db_xref="InterPro:IPR010074"
/db_xref="InterPro:IPR010918"
/db_xref="GeneID:4058505"
/translation="MTHTESLRPQAATFGLTSEEFDLLVSRLGREPNALEAAIVGAMW
SEHCGYKNSRPLFSAFPTTGPQVLQGPGENAGVVDIGEGWGVAFKMESHNHPSAVEPV
QGAATGVGGILRDIFAMGARPFAVLDSLRFGNPDSPRTRFLLNGVVEGISHYGNAIGV
PTVGGEVTFHPSYQENPLVNVMALGLLRHEDLAKGTMGAVGNQIVYVGSKTGRDGLGG
AVFSSADLSAASQADRPAVQVGDPFMEKLLLEATLEAIQAGLVAGVQDMGAAGLVSST
CEMAYRAGLGITLELDRIPTREEGMVPMELCLSESQERMILVPVPGREQELLDLLARW
ELDVVTIGEVEAHDRYRLTWRGEVVCDLPVALLNEAPKYTREGVESAEIRAKRERDLS
GVPVPGDLGAVLVELLSHPTIASKRPIFERYDHQVMTNTVVVPGAADAAVLRVKGSQL
GVAATSDCNPRFVYLDPYTGAAAAVAEAARNLACVGATPLAITDNLNFGNPYEPGVYF
QLQQSVQGIADACRALNTPVTGGNVSLYNQYAEGDHKVAIHPTPTIGMVGVLPDVTRR
ATLDLKPGPHLLYLLGRHATTIGASQYLETVHGLEAGQVPDLDLELERRVIEGTLALI
RAGLTDAAHDCSEGGLAVALAEMAMAGGQGLKVEIKAPAGVRPDALLFGEAHSRIVVA
VPLGHEQAAQDLLEDLGVPYTALGESLPGSDRVTISVTGANVQLSVTLDTLKTAFETP
LREILG"
misc_feature complement(61812..64040)
/locus_tag="Dgeo_0064"
/note="phosphoribosylformylglycinamidine synthase II;
Provisional; Region: PRK01213"
/db_xref="CDD:179249"
misc_feature complement(62964..63944)
/locus_tag="Dgeo_0064"
/note="PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP; Region:
PurL_repeat1; cd02203"
/db_xref="CDD:100034"
misc_feature complement(order(63504..63506,63516..63521,63552..63554,
63657..63659,63666..63668,63675..63677,63705..63707,
63780..63782,63786..63797))
/locus_tag="Dgeo_0064"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100034"
misc_feature complement(order(63552..63560,63705..63707,63717..63719))
/locus_tag="Dgeo_0064"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100034"
misc_feature complement(61929..62735)
/locus_tag="Dgeo_0064"
/note="PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP; Region:
PurL_repeat2; cd02204"
/db_xref="CDD:100035"
misc_feature complement(order(62385..62387,62397..62402,62454..62456,
62553..62555,62562..62564,62571..62573,62607..62609,
62682..62684,62688..62699))
/locus_tag="Dgeo_0064"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100035"
misc_feature complement(order(62454..62462,62607..62609,62619..62621))
/locus_tag="Dgeo_0064"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100035"
gene complement(64046..64714)
/locus_tag="Dgeo_0065"
/db_xref="GeneID:4058506"
CDS complement(64046..64714)
/locus_tag="Dgeo_0065"
/note="catalyzes the formation of
2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from
N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and
L-glutamine in purine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine synthase I"
/protein_id="YP_603537.1"
/db_xref="GI:94984173"
/db_xref="InterPro:IPR010075"
/db_xref="InterPro:IPR011698"
/db_xref="GeneID:4058506"
/translation="MRTAVIQFPGSNCDADALHAARLTLDPDAGFVWHTETALPRGTE
LVFLPGGFSYGDHLRSGAIAARSPIMAAVKAHAERGGFVLGVCNGFQVLTEAGLLPGA
LSRNRDLHFRCAPVHLRVENAQTVFTRAYQPGQILEIPIAHGEGNYYADPETIARLEA
EGRVVFRYVDNPNGSLNDIAGIVNERGNVLGMMPHPERAVEALLGSEDGRGIFESLKG
ALVQ"
misc_feature complement(64067..64708)
/locus_tag="Dgeo_0065"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in Formylglycinamide ribonucleotide
amidotransferase; Region: GATase1_FGAR_AT; cd01740"
/db_xref="CDD:153211"
misc_feature complement(order(64121..64132,64136..64138,64286..64291,
64442..64444,64454..64456,64547..64549,64559..64564))
/locus_tag="Dgeo_0065"
/note="putative active site [active]"
/db_xref="CDD:153211"
misc_feature complement(order(64124..64126,64130..64132,64454..64456))
/locus_tag="Dgeo_0065"
/note="catalytic triad [active]"
/db_xref="CDD:153211"
gene complement(64711..64968)
/locus_tag="Dgeo_0066"
/db_xref="GeneID:4058507"
CDS complement(64711..64968)
/locus_tag="Dgeo_0066"
/note="PFAM: phosphoribosylformylglycinamidine synthetase
PurS: (5.7e-24);
KEGG: dra:DR0224 hypothetical protein, ev=1e-29, 75%
identity"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine synthase
subunit PurS"
/protein_id="YP_603538.1"
/db_xref="GI:94984174"
/db_xref="InterPro:IPR003850"
/db_xref="GeneID:4058507"
/translation="MPTYHAKVFVTLKPSILDPQGRTVERALSHLDYANVSGVRIGKY
IELTLTGERTEVETELAHIVENVLSNPIMENARWELEERPA"
misc_feature complement(64723..64959)
/locus_tag="Dgeo_0066"
/note="Phosphoribosylformylglycinamidine (FGAM) synthase;
Region: PurS; pfam02700"
/db_xref="CDD:202354"
gene complement(65028..65753)
/locus_tag="Dgeo_0067"
/db_xref="GeneID:4058508"
CDS complement(65028..65753)
/locus_tag="Dgeo_0067"
/note="catalyzes the formation of
(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-
carboxamido)succinate from
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and
L-aspartate in purine biosynthesis; SAICAR synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazolesuccinocarboxamide
synthase"
/protein_id="YP_603539.1"
/db_xref="GI:94984175"
/db_xref="InterPro:IPR001636"
/db_xref="GeneID:4058508"
/translation="MKLEQRYEGKAKKVYATENPLEYVVEYKDDATAFNGVKRAQIVG
KGQINNAITAHLFPLLEEAGVPTHFLEKLSEREQRVRAVTIIPVEVIVRNVAAGSFAK
RLGLEEGTPLARPVVEYCLKSDALGDPLINTDTAVALGWASEDDLKRIRELALKVRDF
LTPYFAARGIRLIDFKLEFGRTHDGQIVLADEISPDTCRFWDAATNEKLDKDRFRRDL
GGVEDAYAEMLRRVTGEGGRDEG"
misc_feature complement(65049..65753)
/locus_tag="Dgeo_0067"
/note="phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed; Region: PRK09362"
/db_xref="CDD:181800"
misc_feature complement(65052..65735)
/locus_tag="Dgeo_0067"
/note="bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
(SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415"
/db_xref="CDD:133470"
misc_feature complement(order(65157..65168,65181..65183,65220..65222,
65226..65234,65370..65372,65388..65390,65394..65396,
65457..65465,65475..65477,65481..65483,65487..65489,
65499..65501,65505..65516,65547..65549,65649..65651,
65685..65687,65712..65714,65718..65729,65733..65735))
/locus_tag="Dgeo_0067"
/note="active site"
/db_xref="CDD:133470"
misc_feature complement(order(65181..65186,65220..65222,65388..65390,
65499..65501,65505..65507,65511..65513,65550..65552,
65679..65681,65685..65687,65709..65714,65718..65720,
65724..65729,65733..65735))
/locus_tag="Dgeo_0067"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133470"
misc_feature complement(order(65157..65168,65226..65234,65370..65372,
65394..65396,65457..65465,65475..65477,65481..65483,
65487..65489,65649..65651))
/locus_tag="Dgeo_0067"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133470"
gene complement(66048..66899)
/locus_tag="Dgeo_0068"
/db_xref="GeneID:4058509"
CDS complement(66048..66899)
/locus_tag="Dgeo_0068"
/note="TIGRFAM: modification methylase, HemK family:
(2.7e-52);
PFAM: methyltransferase small: (2.5e-09) ribosomal L11
methyltransferase: (0.005) Methyltransferase type 12:
(2.2e-07);
KEGG: dra:DR0245 hemK protein, ev=1e-101, 70% identity"
/codon_start=1
/transl_table=11
/product="HemK family modification methylase"
/protein_id="YP_603540.1"
/db_xref="GI:94984176"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR004556"
/db_xref="InterPro:IPR007848"
/db_xref="InterPro:IPR010456"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4058509"
/translation="MTATLTLHTWLQEATRLLRDAGVPSPEADARALVQHALNLGGVA
LLTRGTEPVAEADAARLVNLLRRRAAREPLQHLLGEVEWGGVRLRTDRRALVPRPETE
WLLHLALETLQGVSAPRVLDVGTGTGALALGIKAARPDASVTATDLSPDALTLARENA
VLNGLDVVFLAGRLLAGLSGPFDLIVSNPPYLPAADREQVDPEVRFDPDLALYAGPEG
LDVARPLAVEAQAALAPGSVLLLELDPRNAAPFAAELREQGWQVAVLPDLAGRERFVR
ANRRAEG"
misc_feature complement(66063..66884)
/locus_tag="Dgeo_0068"
/note="N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional; Region: PRK09328"
/db_xref="CDD:181780"
misc_feature complement(<66309..66545)
/locus_tag="Dgeo_0068"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(66336..66338,66378..66386,66456..66461,
66513..66533))
/locus_tag="Dgeo_0068"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(66937..67527)
/locus_tag="Dgeo_0069"
/db_xref="GeneID:4058510"
CDS complement(66937..67527)
/locus_tag="Dgeo_0069"
/note="PFAM: single-stranded nucleic acid binding R3H:
(2.7e-17);
KEGG: dra:DR0246 Jag-related protein, ev=4e-79, 79%
identity"
/codon_start=1
/transl_table=11
/product="single-stranded nucleic acid binding R3H"
/protein_id="YP_603541.1"
/db_xref="GI:94984177"
/db_xref="InterPro:IPR001374"
/db_xref="GeneID:4058510"
/translation="MDNRTNLDDYLAGLGISDADETALPPPSPEVMAPAPSALEAAHE
DPRAVLERFLRGLTSRIDSTLTVTVREGEDALEAEIGGENAGRLAGRDGRTLAAIEVL
AYTVLAKQAGRNDLRVRVDVGGYRKRQAETLTRLAERLAVQVAKSGEAHELQPMPAAD
RRVIHIALKEHPDVTTESVGEGAARRLIIKPRPHQP"
misc_feature complement(66952..67527)
/locus_tag="Dgeo_0069"
/note="Predicted RNA-binding protein [General function
prediction only]; Region: Jag; COG1847"
/db_xref="CDD:32032"
misc_feature complement(67144..67377)
/locus_tag="Dgeo_0069"
/note="jag_K homology RNA-binding domain. The KH domain is
found in proteins homologous to the Bacillus subtilis
protein Jag, which is associated with SpoIIIJ and is
necessary for the third stage of sporulation. The KH
motif is a beta-alpha-alpha-beta-beta...; Region: jag_KH;
cd02414"
/db_xref="CDD:48412"
misc_feature complement(67249..67260)
/locus_tag="Dgeo_0069"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48412"
misc_feature complement(66952..67152)
/locus_tag="Dgeo_0069"
/note="R3H domain found in proteins homologous to Bacillus
subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is
necessary for the third stage of sporulation. The name of
the R3H domain comes from the characteristic spacing of
the most conserved arginine...; Region: R3H_jag; cd02644"
/db_xref="CDD:100073"
misc_feature complement(order(67033..67035,67045..67047))
/locus_tag="Dgeo_0069"
/note="RxxxH motif; other site"
/db_xref="CDD:100073"
gene complement(67615..68199)
/locus_tag="Dgeo_0070"
/db_xref="GeneID:4058511"
CDS complement(67615..68199)
/locus_tag="Dgeo_0070"
/note="PFAM: peptidyl-prolyl cis-trans isomerase,
cyclophilin type: (5.9e-49);
KEGG: dra:DR0237 peptidyl-prolyl cis-trans isomerase,
cyclophilin-type, ev=6e-85, 81% identity"
/codon_start=1
/transl_table=11
/product="peptidyl-prolyl isomerase"
/protein_id="YP_603542.1"
/db_xref="GI:94984178"
/db_xref="InterPro:IPR002130"
/db_xref="GeneID:4058511"
/translation="MTSQDTYQADGFTPTPELARERQTRFSAAPELGEGIEPGKQYRA
VLETSKGRIVLDLFADEAPVTVNSFAYLLRHHYYDGIKFHRVIDGFMAQGGDPTGTGA
GGPGYDFEDEFSPDLRHDRKGVLSMANRGPNTNGSQFFITFGPTPHLDGRHTVFGRVV
EGLDVLDRLTRIQPGMPGTPDVIERAYLVEKTAG"
misc_feature complement(67654..68067)
/locus_tag="Dgeo_0070"
/note="cyclophilin: cyclophilin-type peptidylprolyl cis-
trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the...; Region:
cyclophilin; cd00317"
/db_xref="CDD:29390"
misc_feature complement(order(67741..67743,67753..67758,67780..67782,
67786..67788,67813..67818,67921..67923,67927..67932,
67939..67941,67945..67947))
/locus_tag="Dgeo_0070"
/note="active site"
/db_xref="CDD:29390"
gene complement(68257..69522)
/locus_tag="Dgeo_0071"
/db_xref="GeneID:4058512"
CDS complement(68257..69522)
/locus_tag="Dgeo_0071"
/note="PFAM: peptidase M29, aminopeptidase II: (3.9e-190);
KEGG: dra:DR0236 aminopeptidase, ev=1e-175, 73% identity"
/codon_start=1
/transl_table=11
/product="peptidase M29, aminopeptidase II"
/protein_id="YP_603543.1"
/db_xref="GI:94984179"
/db_xref="InterPro:IPR000787"
/db_xref="GeneID:4058512"
/translation="MSPSSFDDKLARYAELLVRIGVNLPEGGKVRIHAPIEAAPLVRL
VARAAYRAGAADVRVGYRDDHLDRALYEDGSDAAVDFLPEWLAQEQAAMVADGYAFIS
IVGEDPSLLAGVNPDRVARRSKALAAARREVSEAISGMKVNWTVAGMATPAWARRVFP
QLPEEAAVARLWDDIFKVTRADQPDPVAAWDTHLSRLEHLTEYLNEKQYTALHLRSGL
GTDLTVGLAEGHIWQGGAETAKNGIRAVPNLPTDEVFTAPHRDRVDGVAVASKPLSVR
GQLVEGIRVRFEGGKAVEVRAEQGEETLRQLLATDEGAAHLGEIALVPASAPVAQTGT
LFLNTLFDENAASHIALGRCYPTNVQNGENPEALRAAGGNDSLIHVDWMIGTPDMDVD
GITADGKCEALMRGGEWVVGERSAAEAKA"
misc_feature complement(68296..69510)
/locus_tag="Dgeo_0071"
/note="Thermophilic metalloprotease (M29); Region:
Peptidase_M29; pfam02073"
/db_xref="CDD:145308"
gene complement(69773..70234)
/locus_tag="Dgeo_0072"
/db_xref="GeneID:4058513"
CDS complement(69773..70234)
/locus_tag="Dgeo_0072"
/note="PFAM: tRNA/rRNA methyltransferase (SpoU):
(2.8e-40);
KEGG: dra:DR0231 RNA methyltransferase, , ev=2e-71, 83%
identity"
/codon_start=1
/transl_table=11
/product="tRNA/rRNA methyltransferase SpoU"
/protein_id="YP_603544.1"
/db_xref="GI:94984180"
/db_xref="InterPro:IPR001537"
/db_xref="GeneID:4058513"
/translation="MSGPLLHVVLFEPEKAGNVGNVARTCAVLGADLHLIRPFGFHLH
DREFRRAVMDYLQGVTLHEHANWTAYQAALPPEARVWAFSTHAETFHTRAGFRRGDHL
VFGPESRGLPVWLREALPALKLPQPGGGRSLNLAVAAGVAAFEAARQIEGW"
misc_feature complement(69776..70225)
/locus_tag="Dgeo_0072"
/note="Predicted rRNA methylase (SpoU class) [Translation,
ribosomal structure and biogenesis]; Region: CspR;
COG0219"
/db_xref="CDD:30568"
gene complement(70231..70722)
/locus_tag="Dgeo_0073"
/db_xref="GeneID:4058514"
CDS complement(70231..70722)
/locus_tag="Dgeo_0073"
/note="PFAM: MECDP-synthase: (1.5e-43);
KEGG: dra:DR0230 2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase, ev=1e-59, 77% identity"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 2,4-cyclo diphosphate
synthase"
/protein_id="YP_603545.1"
/db_xref="GI:94984181"
/db_xref="InterPro:IPR003526"
/db_xref="GeneID:4058514"
/translation="MTPSPLPYRIGYGEDAHRLAEGRTLVLGGVPIPHAERGAVAHSD
GDAVLHALADALLSGMSLGDIGQYYPDTDPAHAGLDSRVILADSLALVREWKYVPANV
ALVITLDRPKLGPLRADIARNVAALLGLNETEVGVSFKTSEGLAPEHVQVRVTVLLRR
VEQ"
misc_feature complement(70288..70698)
/locus_tag="Dgeo_0073"
/note="MECDP_synthase
(2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
encoded by the ispF gene, catalyzes the formation of
2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
biosynthesis; Region: MECDP_synthase; cd00554"
/db_xref="CDD:100025"
misc_feature complement(order(70291..70299,70306..70311,70315..70317,
70381..70383,70387..70389,70408..70410,70414..70416,
70420..70422,70531..70536,70540..70545,70549..70551,
70657..70659,70669..70677,70681..70683,70687..70689,
70693..70698))
/locus_tag="Dgeo_0073"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100025"
misc_feature complement(order(70573..70575,70672..70674,70678..70680))
/locus_tag="Dgeo_0073"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:100025"
misc_feature complement(order(70300..70308,70381..70392,70396..70401,
70525..70527,70531..70533))
/locus_tag="Dgeo_0073"
/note="CDP-binding sites; other site"
/db_xref="CDD:100025"
gene complement(70807..71430)
/locus_tag="Dgeo_0074"
/db_xref="GeneID:4058515"
CDS complement(70807..71430)
/locus_tag="Dgeo_0074"
/note="PFAM: protein of unknown function UPF0029:
(6.9e-60);
KEGG: dra:DR2203 hypothetical protein, ev=1e-90, 81%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603546.1"
/db_xref="GI:94984182"
/db_xref="InterPro:IPR001498"
/db_xref="GeneID:4058515"
/translation="MNDLPAPFTTLAAPHRQDAVIENSEFLAFAERADTPEAALAQLA
ALRGRYPDATHHPWAYRIGPLYRFSDDGEPGGTAGAPILRAIEGQGVDHVMVVVVRYY
GGVKLGTGGLVRAYGGTAAECLRTAPRLEVRPRLPLSVSVPFEHLSALYHLLGTFDTE
RGEETYTASGVTLAVQVYPEDADAFAQALRDATRGAGVAEGAESQQG"
misc_feature complement(70846..71412)
/locus_tag="Dgeo_0074"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1739"
/db_xref="CDD:31925"
misc_feature complement(71056..71370)
/locus_tag="Dgeo_0074"
/note="Uncharacterized protein family UPF0029; Region:
UPF0029; pfam01205"
/db_xref="CDD:201661"
misc_feature complement(70846..71013)
/locus_tag="Dgeo_0074"
/note="Domain of unknown function (DUF1949); Region:
DUF1949; pfam09186"
/db_xref="CDD:204160"
gene complement(71427..72053)
/locus_tag="Dgeo_0075"
/db_xref="GeneID:4058516"
CDS complement(71427..72053)
/locus_tag="Dgeo_0075"
/note="PFAM: NUDIX hydrolase: (6.7e-22);
KEGG: dra:DR2204 MutT/NUDIX family protein, ev=1e-80, 77%
identity"
/codon_start=1
/transl_table=11
/product="NUDIX hydrolase"
/protein_id="YP_603547.1"
/db_xref="GI:94984183"
/db_xref="InterPro:IPR000086"
/db_xref="GeneID:4058516"
/translation="MAEERTEGTGAVSHRAHPNWAGLIPDAVQPWETLSSRVLVEGFR
VVLEDRARTATGAEVVYQYRPRGPRAVFMLPVTPAGEAVLIRQYRYPLRATIWEVVAG
GVERGEDLLAAAARELAEEVGGVATEWIPLPGFYPQPSISGVVFYPLLALNVTLGETA
QEESEVIERVTLPLAEAYRMLEAGEIQDGPSSLTLWHARRHLVERGLL"
misc_feature complement(71448..71855)
/locus_tag="Dgeo_0075"
/note="ADP-ribose pyrophosphatase (ADPRase) catalyzes the
hydrolysis of ADP-ribose and a variety of additional
ADP-sugar conjugates to AMP and ribose-5-phosphate. Like
other members of the Nudix hydrolase superfamily, it
requires a divalent cation, such as Mg2+; Region:
ADPRase_NUDT5; cd03424"
/db_xref="CDD:72882"
misc_feature complement(order(71448..71453,71463..71465,71472..71474,
71484..71486,71508..71513,71550..71552,71556..71561,
71619..71633,71637..71639,71643..71654,71769..71771,
71784..71786,71790..71792,71796..71798,71847..71849,
71853..71855))
/locus_tag="Dgeo_0075"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:72882"
misc_feature complement(order(71622..71624,71691..71693,71703..71705,
71745..71747,71787..71789,71844..71846))
/locus_tag="Dgeo_0075"
/note="ADP-ribose binding site [chemical binding]; other
site"
/db_xref="CDD:72882"
misc_feature complement(order(71559..71561,71622..71624,71691..71693,
71703..71705,71745..71753,71787..71789))
/locus_tag="Dgeo_0075"
/note="active site"
/db_xref="CDD:72882"
misc_feature complement(order(71682..71735,71739..71750))
/locus_tag="Dgeo_0075"
/note="nudix motif; other site"
/db_xref="CDD:72882"
misc_feature complement(order(71559..71561,71691..71693,71703..71705))
/locus_tag="Dgeo_0075"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:72882"
gene complement(72291..72848)
/locus_tag="Dgeo_0076"
/db_xref="GeneID:4058517"
CDS complement(72291..72848)
/locus_tag="Dgeo_0076"
/note="PFAM: DinB: (3.6e-41);
KEGG: dra:DR2439 hypothetical protein, ev=1e-68, 68%
identity"
/codon_start=1
/transl_table=11
/product="DinB family protein"
/protein_id="YP_603548.1"
/db_xref="GI:94984184"
/db_xref="InterPro:IPR007837"
/db_xref="GeneID:4058517"
/translation="MNVREYYAYLSGAREQLWNFLRALPAADLNRPLIEGDRFRNIKD
LLLHVVDVEDHWVHGIALGDSVAGRYPHDWVQPRAEQYDLGWITRYGQEVGEKTRAFL
ARSPDLSRPVKLVQDDPASDTVTLDQLLWHVMTHEVRHTAQIALLIRQLGHTPPWLDY
LRFMRPQPVPVAAGGALEAEAEDDL"
misc_feature complement(72348..72836)
/locus_tag="Dgeo_0076"
/note="DinB family; Region: DinB; pfam05163"
/db_xref="CDD:203186"
misc_feature complement(72417..72824)
/locus_tag="Dgeo_0076"
/note="DinB superfamily; Region: DinB_2; pfam12867"
/db_xref="CDD:205116"
gene complement(72893..73894)
/locus_tag="Dgeo_0077"
/db_xref="GeneID:4058518"
CDS complement(72893..73894)
/locus_tag="Dgeo_0077"
/note="PFAM: dihydrouridine synthase, DuS: (6.7e-83);
KEGG: dra:DR2440 NifR3 protein, ev=1e-133, 74% identity"
/codon_start=1
/transl_table=11
/product="dihydrouridine synthase, DuS"
/protein_id="YP_603549.1"
/db_xref="GI:94984185"
/db_xref="InterPro:IPR001269"
/db_xref="InterPro:IPR003009"
/db_xref="GeneID:4058518"
/translation="MICGPGFYARRLARPGAVLAPMAGYSDAPMRQLAAEQGALWTVS
EMISARGLVLGGDSEKLTLGRPYPGEVGRVVQLFGAEPDVLAQAVARAESWFAPAALD
LNMGCPVPKVKGRGGACLLQTPEVAYTLVRAMRSATTLDVSAKIRLGWDTDRSVEIAQ
GLAAAGAALITVHGRTSVQRYSGEADWDAIARVAASVKVPVVGSGDVKSAEQARARLN
TGVAAVMIGRGAVGNPWLFRALASGDDVVPSAQERARTALRHAQLHVTFYGPDRFGLL
SVRPLRKVLPHYLPDHPELRAALVQVNTVADVEQALAPLLVDALPPQTQNFVRMSAE"
misc_feature complement(72965..73855)
/locus_tag="Dgeo_0077"
/note="tRNA-dihydrouridine synthase [Translation,
ribosomal structure and biogenesis]; Region: COG0042"
/db_xref="CDD:30391"
misc_feature complement(73181..73843)
/locus_tag="Dgeo_0077"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:73368"
misc_feature complement(order(73211..73216,73277..73279,73283..73285,
73376..73378,73460..73462,73583..73585,73667..73669,
73757..73759,73829..73837))
/locus_tag="Dgeo_0077"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73368"
misc_feature complement(order(73211..73213,73277..73282,73367..73372,
73376..73381,73454..73456,73460..73462,73571..73576,
73667..73669))
/locus_tag="Dgeo_0077"
/note="active site"
/db_xref="CDD:73368"
misc_feature complement(order(73370..73372,73376..73378,73454..73456,
73574..73576))
/locus_tag="Dgeo_0077"
/note="catalytic residues [active]"
/db_xref="CDD:73368"
misc_feature complement(order(73277..73282,73367..73369,73379..73381,
73460..73462,73571..73573))
/locus_tag="Dgeo_0077"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73368"
gene 74053..74559
/locus_tag="Dgeo_0078"
/db_xref="GeneID:4058519"
CDS 74053..74559
/locus_tag="Dgeo_0078"
/note="PFAM: GCN5-related N-acetyltransferase: (4.1e-10);
KEGG: dra:DR2441 hypothetical protein, ev=9e-53, 65%
identity"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_603550.1"
/db_xref="GI:94984186"
/db_xref="InterPro:IPR000182"
/db_xref="InterPro:IPR001005"
/db_xref="GeneID:4058519"
/translation="MNVTPLALHHAPLLHTLYAAAPGYFELLGTRVPSLGEVQRDVEI
ALLDPRRRLELLHDDAGELVGSLDCKYDYPTPGDLTINLLLIREDRQSQGLGRQAVRE
LEARVPPGTQRILASVLGDNPRGARFWERLGYTFARDARPVMTWYAKAVGAPSLRTDR
GSLSVASD"
misc_feature 74215..74370
/locus_tag="Dgeo_0078"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(74302..74310,74338..74343)
/locus_tag="Dgeo_0078"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 74592..75341
/locus_tag="Dgeo_0079"
/db_xref="GeneID:4058520"
CDS 74592..75341
/locus_tag="Dgeo_0079"
/note="TIGRFAM: acetylglutamate kinase: (7.7e-70);
PFAM: aspartate/glutamate/uridylate kinase: (8.9e-36);
KEGG: dra:DR2442 N-acetylglutamate kinase, ev=1e-108, 81%
identity"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_603551.1"
/db_xref="GI:94984187"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001057"
/db_xref="InterPro:IPR004662"
/db_xref="GeneID:4058520"
/translation="MIVKYGGNAMKSVELRRAVAGEIAALRAEQPVVVVHGGGPVIER
ELAARGIASEFSNGLRVTSPQAMAVVEMALAQLNKQLSQDIGAAVGLLGRDSELLVAE
VLDPALGRVGRVTRVNAGLLRTLLGVGLTPVVGCVAVGPDGDALNVNADTAAGAVAGA
LGEGIVFLTDVDGIYRAYPDPESLASQLPRAEVEAGIRDGWIAGGMIPKVRAALEALD
AGAPFAVIASGMQPGVLAAAARGEAGTRLTP"
misc_feature 74592..75326
/locus_tag="Dgeo_0079"
/note="AAK_NAGK-like: N-Acetyl-L-glutamate kinase
(NAGK)-like . Included in this CD are the Escherichia coli
and Pseudomonas aeruginosa type NAGKs which catalyze the
phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in
the second step of arginine...; Region: AAK_NAGK-like;
cd04238"
/db_xref="CDD:58604"
misc_feature order(74601..74603,74607..74612,74706..74711,75096..75098,
75114..75116,75192..75194,75198..75200,75216..75218)
/locus_tag="Dgeo_0079"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58604"
misc_feature order(74706..74711,74769..74771,75030..75035,75039..75041)
/locus_tag="Dgeo_0079"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58604"
gene complement(75346..75954)
/locus_tag="Dgeo_0080"
/db_xref="GeneID:4058521"
CDS complement(75346..75954)
/locus_tag="Dgeo_0080"
/note="KEGG: dra:DR2443 ribosomal protein
N-acetyltransferase, , ev=2e-54, 60% identity"
/codon_start=1
/transl_table=11
/product="ribosomal protein N-acetyltransferase"
/protein_id="YP_603552.1"
/db_xref="GI:94984188"
/db_xref="GeneID:4058521"
/translation="MTVPHYSAAMPTLPDVPTEVRTPRLLLRAPRPEDAPALHAAVQA
SLPELRRWMVWAQEPLDLPGTVENLRAAAARFAERENLRYHVWNAEGTELIGSSGSHA
LDWRVPRAEIGDWIASAHTGRGYATEVARALTELGLLSPQAGGLGLRRIEIRCDRRNK
RSARIPQALGYRLDATLINDAVAADNPAELRDTLVFSITQSG"
misc_feature complement(75439..75687)
/locus_tag="Dgeo_0080"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:201324"
misc_feature complement(75439..>75684)
/locus_tag="Dgeo_0080"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:205482"
gene complement(75968..77083)
/locus_tag="Dgeo_0081"
/db_xref="GeneID:4058522"
CDS complement(75968..77083)
/locus_tag="Dgeo_0081"
/note="KEGG: dra:DR0024 phosphoribosylaminoimidazole
carboxylase ATPase subunit, ev=1e-159, 77% identity;
TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase
subunit: (9.4e-180);
PFAM: ATP-dependent carboxylate-amine ligase-like,
ATP-grasp: (1.9e-66)"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase ATPase
subunit"
/protein_id="YP_603553.1"
/db_xref="GI:94984189"
/db_xref="InterPro:IPR003135"
/db_xref="InterPro:IPR005875"
/db_xref="InterPro:IPR011761"
/db_xref="GeneID:4058522"
/translation="MTSGAPPTLGILGGGQLAQMLALAALPLGVRAVVLEPDPQAPAR
LCAEHLQAPYTDPAGLARLAACTAVTLEFENVPVEALDALESRVPVRPGGALLARSKH
RAREKEALRAAGAQTAPFLPIEREADLTGALTAVGGQGLLKTSELGYDGKGQRRVNSE
AELRDAWIALGRVSCVLEGLVPFEREVSLAVARSAEGEVAFGPLVENTHRQGILRTSV
FPAAAPEGTEARAREVARAVAEAWELAGLLTLEFFQLPGGALLVNEVAPRVHNSGHLT
QDGGGLSQFEAQVRAVLGLPLRDWAPLHPTAMVNIVGTADGQQPDWAGIDALPGSRLH
LYHKAPRPGRKLGHVNLVAPDLETLRARLDQLEVLVP"
misc_feature complement(75983..76993)
/locus_tag="Dgeo_0081"
/note="phosphoribosylaminoimidazole carboxylase ATPase
subunit; Reviewed; Region: PRK06019"
/db_xref="CDD:180352"
misc_feature complement(76247..76756)
/locus_tag="Dgeo_0081"
/note="ATP-grasp domain; Region: ATP-grasp; pfam02222"
/db_xref="CDD:202164"
gene complement(77080..77613)
/locus_tag="Dgeo_0082"
/db_xref="GeneID:4058523"
CDS complement(77080..77613)
/locus_tag="Dgeo_0082"
/note="KEGG: dra:DR0023 phosphoribosylaminoimidazole
carboxylase catalytic subunit, ev=3e-73, 81% identity;
TIGRFAM: phosphoribosylaminoimidazole carboxylase,
catalytic subunit: (1.8e-93);
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate
(AIR) carboxylase: (2.2e-80)"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase
catalytic subunit"
/protein_id="YP_603554.1"
/db_xref="GI:94984190"
/db_xref="InterPro:IPR000031"
/db_xref="GeneID:4058523"
/translation="MRAVTEGQGTPRVGVVMGSRSDFETMGSALDVLRDLGIPYEVRV
LSAHRTPHLLARYAARAERLNLSCLIAGAGGAAHLPGMLAAFTRLPVLGVPVQSRALS
GQDSLLSIVQMPAGVPVATFAIGSAGAKNAALFAAALLATTDPTVRDRLNAFRAAQTQ
AVLDDPFFEGHPAAEAE"
misc_feature complement(77128..77583)
/locus_tag="Dgeo_0082"
/note="AIR carboxylase; Region: AIRC; pfam00731"
/db_xref="CDD:144362"
gene 77636..78850
/locus_tag="Dgeo_0083"
/db_xref="GeneID:4058524"
CDS 77636..78850
/locus_tag="Dgeo_0083"
/note="KEGG: dra:DR0340 folylpolyglutamate synthase /
dihydrofolate synthase, ev=1e-157, 73% identity;
TIGRFAM: FolC bifunctional protein: (1.5e-116);
PFAM: cytoplasmic peptidoglycan synthetases-like:
(2.6e-06) Mur ligase, middle region: (8.4e-05)"
/codon_start=1
/transl_table=11
/product="bifunctional folylpolyglutamate synthase/
dihydrofolate synthase"
/protein_id="YP_603555.1"
/db_xref="GI:94984191"
/db_xref="InterPro:IPR001645"
/db_xref="InterPro:IPR004101"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:4058524"
/translation="MLERGEHPDLVCLRYPQPMSAAPDYDWLYARTRAGRERGPQGAR
RLLDRLGSPDARFACIRVVGTNGKGSTCAMLEAGLLAAGVRTGRFTSPHLQRYEERVR
VNGQDLSPERTAAFIGWAQEHAPDAAFFDLTLALACQVFAEDDVDIAVMEAGVGGLSD
ATQALRKVAAVALTNVALDHVATLGPTLGDIARDKAGAARPGVPLLTTAAGEALEVVR
AVAAEVGALLYTPQTHPALFALPHPPRLAGAHQQMNGALAAATLRTLGYPDSVEAALR
ATHPARLERFEIGGKTVLLDGAHNPHATRALAASVPHADVLLFGNLARKDTAATLAPL
LAVAPVRVFTTPGDLATSPADLAVQYGGHSVLSPADALAQALALTPPGGTLLVAGSLY
LAGTVRHQLASS"
misc_feature 77765..78829
/locus_tag="Dgeo_0083"
/note="folylpolyglutamate synthase/dihydrofolate synthase;
Region: folC; TIGR01499"
/db_xref="CDD:200112"
misc_feature 78473..>78613
/locus_tag="Dgeo_0083"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 78888..78963
/locus_tag="Dgeo_R0001"
/note="tRNA-Lys1"
/db_xref="GeneID:4057201"
tRNA 78888..78963
/locus_tag="Dgeo_R0001"
/product="tRNA-Lys"
/db_xref="GeneID:4057201"
gene 79358..79795
/locus_tag="Dgeo_0084"
/db_xref="GeneID:4058681"
CDS 79358..79795
/locus_tag="Dgeo_0084"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603556.1"
/db_xref="GI:94984192"
/db_xref="GeneID:4058681"
/translation="MLYRRQRNLSPLLITVAAVLGLALGFLTGRATAPAPTLARLMAP
SVEHARKASGALEIVPLEYARAQQGSTSSFDAALSAARQAQAELDEATLFRQVNPSGF
REAQSALAALVRAVETRRAADVVRMNVTRAQTALQALQPTGAP"
gene complement(80110..80535)
/locus_tag="Dgeo_0085"
/db_xref="GeneID:4058682"
CDS complement(80110..80535)
/locus_tag="Dgeo_0085"
/note="PFAM: protein of unknown function DUF326: (0.073);
KEGG: tfu:Tfu_1443 hypothetical protein, ev=3e-37, 54%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603557.1"
/db_xref="GI:94984193"
/db_xref="InterPro:IPR005560"
/db_xref="GeneID:4058682"
/translation="MPQATQAMLATHPQRDTPFNSQALTACIEACFECAQVCTSCADA
CLGEQEHLMHLARCIRLNLDCADICHATGRVVTRLTQADPAVLRAQLQACVAACRACG
EECEQHAREMNMEHCRICAESCRRCEQACQQLLGEIKAS"
misc_feature complement(80134..80466)
/locus_tag="Dgeo_0085"
/note="Cysteine-rich 4 helical bundle widely conserved in
bacteria; Region: DUF326; cd08026"
/db_xref="CDD:153434"
misc_feature complement(order(80245..80250,80257..80259,80269..80271,
80278..80283,80311..80316,80323..80325,80332..80337,
80344..80349,80353..80358))
/locus_tag="Dgeo_0085"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153434"
gene 80725..81318
/locus_tag="Dgeo_0086"
/db_xref="GeneID:4058683"
CDS 80725..81318
/locus_tag="Dgeo_0086"
/note="PFAM: protein of unknown function DUF305: (1e-20);
KEGG: par:Psyc_0285 hypothetical protein, ev=4e-19, 33%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603558.1"
/db_xref="GI:94984194"
/db_xref="InterPro:IPR005183"
/db_xref="GeneID:4058683"
/translation="MKSKSLLGPLTVLTLMATPALAQMDHSLHGQPDTVVPLARGMAD
MDSLAGLSGKAFDRAYLSMMMAHHQGAVNMARAVQGRVQDAQVKSWVANVIRDQTREI
NDMRTWLKPLGGIDTKRQAMMASGMQNMLTPLKAAKNPDVAFVEGMLPHHASALNMAN
LALQRSNDPRVLKLSRDIIQAQANEMYAYRQWLARRR"
misc_feature 80893..81303
/locus_tag="Dgeo_0086"
/note="Domain of unknown function (DUF305); Region:
DUF305; pfam03713"
/db_xref="CDD:202734"
gene 81377..82045
/locus_tag="Dgeo_0087"
/db_xref="GeneID:4058684"
CDS 81377..82045
/locus_tag="Dgeo_0087"
/note="PFAM: response regulator receiver: (1.1e-35)
transcriptional regulatory protein-like: (4.8e-26);
KEGG: ttj:TTHA1722 response regulator, ev=2e-75, 65%
identity"
/codon_start=1
/transl_table=11
/product="two component transcriptional regulator"
/protein_id="YP_603559.1"
/db_xref="GI:94984195"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR001867"
/db_xref="GeneID:4058684"
/translation="MARILIVDDDPAILEILGAYLRAEGHVVLETQDGTTGRAKLAEA
DLAILDWMLPGASGLDLARQQRRDRPDFPILLLTARGEEEDKLRGLEAGADDYVTKPF
SPREVVARVRALLRRARLQDSVSTGGLQLDERTRTAMLDGQELLLSKLEFDLLLTLAR
HPGFVWSRDRLLERVWGADFPGVERVVDVHMAALRRKLGEHPEQPRFIETVRGVGYRF
REEA"
misc_feature 81383..82042
/locus_tag="Dgeo_0087"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 81389..81694
/locus_tag="Dgeo_0087"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(81398..81403,81524..81526,81548..81550,81608..81610,
81665..81667,81674..81679)
/locus_tag="Dgeo_0087"
/note="active site"
/db_xref="CDD:29071"
misc_feature 81524..81526
/locus_tag="Dgeo_0087"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(81533..81538,81542..81550)
/locus_tag="Dgeo_0087"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 81674..81682
/locus_tag="Dgeo_0087"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 81746..82030
/locus_tag="Dgeo_0087"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(81818..81820,81875..81880,81932..81934,81941..81943,
81965..81970,82004..82006,82019..82021)
/locus_tag="Dgeo_0087"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 82042..83121
/locus_tag="Dgeo_0088"
/db_xref="GeneID:4058685"
CDS 82042..83121
/locus_tag="Dgeo_0088"
/note="PFAM: ATP-binding region, ATPase-like: (3.8e-46)
histidine kinase, HAMP region: (2.1e-15) histidine kinase
A-like: (4.3e-12);
KEGG: ttj:TTHA1723 sensor histidine kinase, ev=3e-95, 56%
identity"
/codon_start=1
/transl_table=11
/product="sensor signal transduction histidine kinase"
/protein_id="YP_603560.1"
/db_xref="GI:94984196"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4058685"
/translation="MKLFPRLFLGHLLVILIALGALFLGVELSAPSFYQHHVAQMVAL
LGPEGRTLRPDLESGLRRTLHSALLAALPFAVAVAALTASLTSRRIVRSVRLLSDGSR
ALAAGQYRRRLPETGQDELAALAHNLNVMAASLERVEQDRVALIGNVGHELRTPLAAL
RGYLEALTDGVMVPSQAAPALRREVRAIERLASDLSLVSRIEAGQVELSPTIFSARSL
LTATLERFGDAYAARGVALLAQNPPDDLRVRADFERAAQVLSNLLSNALRHTPPGGRV
TLTVQAAGEQATFSVADTGSGIPTEHLERIFERFYRVDPARTRGEGSGVGLTIARSLV
EQMGGRIGVTSGKGGSTFTFTLPLA"
misc_feature <82345..82452
/locus_tag="Dgeo_0088"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(82345..82347,82351..82353,82399..82404,82408..82413,
82420..82425,82429..82434,82441..82446)
/locus_tag="Dgeo_0088"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 82456..82641
/locus_tag="Dgeo_0088"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(82474..82476,82486..82488,82498..82500,82507..82509,
82519..82521,82528..82530,82579..82581,82591..82593,
82603..82605,82612..82614,82624..82626)
/locus_tag="Dgeo_0088"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 82492..82494
/locus_tag="Dgeo_0088"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 82810..83064
/locus_tag="Dgeo_0088"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(82822..82824,82834..82836,82843..82845,82912..82914,
82918..82920,82924..82926,82930..82935,83011..83022)
/locus_tag="Dgeo_0088"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 82834..82836
/locus_tag="Dgeo_0088"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(82924..82926,82930..82932,83011..83013,83017..83019)
/locus_tag="Dgeo_0088"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(83147..85648)
/locus_tag="Dgeo_0089"
/db_xref="GeneID:4058686"
CDS complement(83147..85648)
/locus_tag="Dgeo_0089"
/note="TIGRFAM: ATPase, P-type,
K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter: (1.6e-50) Copper
ion-binding: (6.5e-09) ATPase, P type
cation/copper-transporter: (2.6e-254) Heavy metal
translocating P-type ATPase: (6.3e-254);
PFAM: Haloacid dehalogenase-like hydrolase: (4.1e-41)
Heavy metal transport/detoxification protein: (9.6e-13)
E1-E2 ATPase-associated region: (1.1e-101);
KEGG: dra:DR2453 cation-transporting ATPase, ev=0.0, 62%
identity"
/codon_start=1
/transl_table=11
/product="P type cation/copper-transporter ATPase"
/protein_id="YP_603561.1"
/db_xref="GI:94984197"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR001802"
/db_xref="InterPro:IPR001877"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006121"
/db_xref="InterPro:IPR006122"
/db_xref="InterPro:IPR006403"
/db_xref="InterPro:IPR006416"
/db_xref="InterPro:IPR008250"
/db_xref="GeneID:4058686"
/translation="MTRTIELGVQGMTCASCVARVERALKKVDGVENASVNLATERAT
VTYDPAVTTPQVLLERVKDVGYEPVVSHLELGVQGMTCASCVGRVERALKKVDGVLNT
SVNLATERARVTYLPSSVSPGQLKAAIREAGYEVLEAPAGVSREEQEREARAREVSHL
RRQVLFSAVFALPLLLLAMLPMLVPAVQDWLMTTFGHGVMTTLNWVMLALALPIQFGP
GRRFYRLGWKSLQHRSPDMNALVMIGTTAAFLYSLVATVAPGIFPEGTAHVYYEASGV
VITLILLGKYFEAIAKGRSSEAMKKLLSLQAKTARVVRSGQELELPTDEVLVGDLISV
RPGEKIPVDGEVVQGASFVDESMITGEPVPVSKQPGAAVVGGTINGNGALTFRATRIG
ADTALAQIIQLVETAQGSKPPIQGLADRVVAVFVPVVLGIAALTFLLWLLLGGQTALS
FALITTVAVLIIACPCAMGLATPTSIMVGTGKAAELGVLFKDGGALERLQDVRIVALD
KTGTLTRGRPELTDLVTVPSLDRSEVLKLVAAAEEQSEHPIARAIVDAAKRAGLTVQK
PEAFEAVPGYGLDAWVEGHHVQVGADRYMAKLGLDVNTFAPQAQQLGDEGKSPLYAAI
DGQLAAVLAVADPIKDGSQEAVNALHRMGLRVAMITGDNTRTARAIARQLGIDEVLAE
VLPSGKSDAVRELQATGHKVAFVGDGINDAPALAQADVGLAIGTGTDVAVETADVILM
SGDLRGVPNAFALSRATLRNIRLNLFWAFAYNIVLIPVAAGVLYPAFGILLSPVLAAA
AMGFSSVFVLSNALRLRGFRPPVRPLQSQPLGQTA"
misc_feature complement(<85427..85645)
/locus_tag="Dgeo_0089"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:32399"
misc_feature complement(85445..85633)
/locus_tag="Dgeo_0089"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature complement(order(85598..85600,85607..85615))
/locus_tag="Dgeo_0089"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature complement(83189..85432)
/locus_tag="Dgeo_0089"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:32399"
misc_feature complement(85241..85429)
/locus_tag="Dgeo_0089"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature complement(order(85394..85396,85403..85411))
/locus_tag="Dgeo_0089"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature complement(84155..84823)
/locus_tag="Dgeo_0089"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature complement(83474..83779)
/locus_tag="Dgeo_0089"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(83669..83671)
/locus_tag="Dgeo_0089"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 85816..86034
/locus_tag="Dgeo_0090"
/db_xref="GeneID:4058687"
CDS 85816..86034
/locus_tag="Dgeo_0090"
/note="PFAM: Heavy metal transport/detoxification protein:
(3.4e-16);
KEGG: dra:DR2452 hypothetical protein, ev=6e-15, 61%
identity"
/codon_start=1
/transl_table=11
/product="heavy metal transport/detoxification protein"
/protein_id="YP_603562.1"
/db_xref="GI:94984198"
/db_xref="InterPro:IPR001366"
/db_xref="InterPro:IPR006121"
/db_xref="GeneID:4058687"
/translation="MTQTDQIELNITGMTCSHCQAGVTRALKQVPGVTDAQVDLKTGK
AVVYGNAEPQQLIEAVAEEGYGAQVAPR"
misc_feature 85837..86016
/locus_tag="Dgeo_0090"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(85855..85863,85870..85872)
/locus_tag="Dgeo_0090"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
gene 86034..86378
/locus_tag="Dgeo_0091"
/db_xref="GeneID:4058688"
CDS 86034..86378
/locus_tag="Dgeo_0091"
/note="PFAM: protein of unknown function DUF156:
(8.9e-15);
KEGG: dra:DR2449 hypothetical protein, ev=8e-32, 69%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603563.1"
/db_xref="GI:94984199"
/db_xref="InterPro:IPR003735"
/db_xref="GeneID:4058688"
/translation="MTKETTAESLDMTPHQGEHGHTGHHLCMPENSRKRAARRLAIAR
GHLESIRRSLEDPNVYCVDVLRQIKAVQGALDGAANVVLRGHLEAHVATAALRGDEKE
LVNELMDVLKYL"
misc_feature 86166..86372
/locus_tag="Dgeo_0091"
/note="Thermus thermophilus CsoR, a Cu(I)-sensing
transcriptional regulator, and related domains; this
domain family was previously known as part of DUF156;
Region: TthCsoR-like_DUF156; cd10151"
/db_xref="CDD:197386"
misc_feature order(86172..86177,86181..86186,86193..86204,86211..86219,
86223..86231,86235..86240,86244..86249,86256..86261,
86268..86273,86277..86285,86289..86297,86304..86306,
86331..86336,86340..86369)
/locus_tag="Dgeo_0091"
/note="putative homotetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:197386"
misc_feature order(86172..86177,86181..86186,86193..86204,86211..86219,
86223..86231,86235..86240,86244..86249,86256..86261,
86268..86270,86277..86279,86289..86291,86349..86351,
86358..86369)
/locus_tag="Dgeo_0091"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:197386"
misc_feature order(86211..86213,86289..86291,86349..86351)
/locus_tag="Dgeo_0091"
/note="allosteric switch controlling residues; other site"
/db_xref="CDD:197386"
misc_feature order(86214..86216,86289..86291,86301..86303)
/locus_tag="Dgeo_0091"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197386"
misc_feature order(86271..86273,86280..86285,86292..86297,86301..86306,
86331..86336,86340..86348,86352..86357)
/locus_tag="Dgeo_0091"
/note="putative homodimer-homodimer interface [polypeptide
binding]; other site"
/db_xref="CDD:197386"
gene complement(86421..87728)
/locus_tag="Dgeo_0092"
/db_xref="GeneID:4058689"
CDS complement(86421..87728)
/locus_tag="Dgeo_0092"
/note="PFAM: CBS: (5.3e-24) protein of unknown function
DUF21: (4.4e-63) transporter-associated region: (6e-18);
KEGG: mlo:mlr2581 hemolysin, ev=3e-79, 40% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603564.1"
/db_xref="GI:94984200"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR002550"
/db_xref="InterPro:IPR005170"
/db_xref="GeneID:4058689"
/translation="MGNPWLEFGILILLLIINGFFSGSELGVVSAKRSRLEAAAARGS
RGAAAAVRLTEQPGAFLATVQIGITLIGTISAVFAGGSLTGYLEPLLRPLFGAAAGSA
ANVAVVLLVTFLSLVLGELAPKGIALRNPEALAARVAPFFTVLSRVARPLVWLLDRTA
SGLLWLLGMRGAAQEVVTEEDVRAVVLQAAESGSLEETESERIASVLRFNDRRVRDLM
TPRTEAVTLDLDAPIEKLVETVLENEHDRYAVRDGRGDVVGQVAVTDVLRALYTGEPL
ADFVRPAVFVPEAAWAEDALARLEREGQQRLAVVVDEYGDFSGVLSISDLLAELAGVE
DQGDEDRIVRREDGSFLVDGGIAMHELRETLPLPALPREEFSTLAGYVLDVLGEFPQV
GAVATVDGWDIEVVDVDGPRVDRLLIRPPRNVGNVGRVADAEA"
misc_feature complement(86445..87677)
/locus_tag="Dgeo_0092"
/note="Hemolysins and related proteins containing CBS
domains [General function prediction only]; Region: TlyC;
COG1253"
/db_xref="CDD:31445"
misc_feature complement(87132..87677)
/locus_tag="Dgeo_0092"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:201879"
misc_feature complement(86742..87065)
/locus_tag="Dgeo_0092"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature complement(86466..86702)
/locus_tag="Dgeo_0092"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene 87831..88760
/gene="hemC"
/locus_tag="Dgeo_0093"
/db_xref="GeneID:4058690"
CDS 87831..88760
/gene="hemC"
/locus_tag="Dgeo_0093"
/note="transformation of porphobilinogen to
hydroxymethylbilane in porphyrin biosynthesis"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_603565.1"
/db_xref="GI:94984201"
/db_xref="InterPro:IPR000860"
/db_xref="GeneID:4058690"
/translation="MRTVTVGTRGSALALAQTRWVVARLKEEWPDTDFRIQTISTKGD
RDRAALQSLAQKGDKGFWVKEIEDALLAGRIDIAVHSLKDLPTEQPEGLEIASIPKRV
DARDVLIGKDGMKRLEDLPSGARVGTSSVRRKAFLRAYRPDLQILDLRGNIDTRLAAL
GTPDYDAIVLAAAGLIRTEMRHRIDEFIDPDLLLPAPGQGALALETRADDDLSIEVVY
AIHDHATDDRVTAEREFLAGLGAGCMAPVGAHATLKDGVLTLEGWVGALDGSQVIRAT
TSGDPAECADLGAELAADMLGQGAQQLIEAAHR"
misc_feature 87831..88718
/gene="hemC"
/locus_tag="Dgeo_0093"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:178840"
misc_feature 87840..88721
/gene="hemC"
/locus_tag="Dgeo_0093"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cl03189"
/db_xref="CDD:207872"
misc_feature order(87861..87863,87876..87878,88074..88091,88095..88097,
88122..88127,88131..88148,88224..88226,88230..88235,
88245..88247,88284..88286,88347..88349,88356..88361,
88407..88430,88482..88484,88503..88505,88512..88514,
88524..88529,88536..88538,88557..88559,88569..88571,
88575..88577,88611..88613,88626..88628,88635..88637,
88644..88646,88650..88652)
/gene="hemC"
/locus_tag="Dgeo_0093"
/note="domain interfaces; other site"
/db_xref="CDD:29604"
misc_feature order(87867..87869,87879..87881,88071..88073,88077..88082,
88212..88220,88224..88229,88275..88277,88296..88298,
88335..88343,88350..88352,88359..88361,88416..88418,
88425..88430,88557..88559)
/gene="hemC"
/locus_tag="Dgeo_0093"
/note="active site"
/db_xref="CDD:29604"
gene 88951..89916
/locus_tag="Dgeo_0094"
/db_xref="GeneID:4058691"
CDS 88951..89916
/locus_tag="Dgeo_0094"
/note="PFAM: Asparaginase/glutaminase: (1.5e-111);
KEGG: dra:DR2353 L-asparaginase, ev=1e-135, 75% identity"
/codon_start=1
/transl_table=11
/product="asparaginase/glutaminase"
/protein_id="YP_603566.1"
/db_xref="GI:94984202"
/db_xref="InterPro:IPR006034"
/db_xref="GeneID:4058691"
/translation="MPRLAVIHTGGTIASRPNPHGPGVTPQVAPSVPGLPGVLVSGHQ
PFNLPSPHVTPAHMLALAHLIEQLAPEQDGIVVTHGTDTLEETAFFLHLTLATRTPVV
LTGSMRHAGEASWDGPGNLLDAAEVALHPQSRGRGPLAVFGGDIYDARTVTKVHTTAV
DAFGGYPGPIGRIDRTGDVAHLRYFAMPEARPVYAPSALTAHVEILSAYAGWQGEGYK
EADARSDGLVIAALGTGNLPAELLPLIAETAARGKPVVIATRTHAGPVIPIYGYPGGG
ATLVQAGAIPASFLNAHKARLLLLVLLSLGRDLGEIRRVFEAGAF"
misc_feature 88954..89838
/locus_tag="Dgeo_0094"
/note="Type II (periplasmic) bacterial L-asparaginase;
Region: L-asparaginase_II; cd08964"
/db_xref="CDD:199208"
misc_feature order(88981..88986,89095..89103,89188..89196,89266..89268,
89410..89412,89656..89658)
/locus_tag="Dgeo_0094"
/note="active site"
/db_xref="CDD:199208"
misc_feature order(88984..88986,89101..89115,89122..89124,89194..89196,
89206..89208,89272..89274,89287..89295,89302..89307,
89377..89382,89392..89394,89398..89400,89410..89421,
89425..89427,89452..89460,89464..89466,89470..89472,
89497..89499,89503..89511,89515..89520,89563..89565,
89569..89571,89575..89577,89587..89589,89593..89595,
89614..89616,89620..89622,89644..89652,89656..89658,
89662..89664,89725..89730,89752..89757)
/locus_tag="Dgeo_0094"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:199208"
misc_feature order(89101..89115,89122..89124,89194..89199,89203..89211,
89410..89424,89557..89565,89569..89571,89575..89577,
89587..89589,89593..89598,89605..89610,89614..89616,
89620..89622,89644..89652,89656..89664,89725..89733,
89743..89748,89824..89829,89836..89838)
/locus_tag="Dgeo_0094"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:199208"
gene complement(89945..90562)
/locus_tag="Dgeo_0095"
/db_xref="GeneID:4058692"
CDS complement(89945..90562)
/locus_tag="Dgeo_0095"
/note="KEGG: dra:DR2612 DedA family protein, ev=2e-87, 73%
identity"
/codon_start=1
/transl_table=11
/product="DedA family protein"
/protein_id="YP_603567.1"
/db_xref="GI:94984203"
/db_xref="GeneID:4058692"
/translation="MADWVQNLMDSLGYLGILLLMIVENLFPPIPSELIMPSAGFAAS
RGDLNLLLVIAVGTLGSVLGTLPLYYLGRAFGEERLVQWADRYGHWLTLRGEDIRRAD
DWFDRYGAGAVLFGRLVPGIRSLLSLPAGMSEMPLPTFLLYSTIGSGLWASALAGAGY
LLGENYDQVEQYLGPASKVILAVVVLAVVVWFVRRKKTLGVRKES"
misc_feature complement(<90125..90562)
/locus_tag="Dgeo_0095"
/note="Uncharacterized membrane-associated protein
[Function unknown]; Region: DedA; COG0586"
/db_xref="CDD:30931"
misc_feature complement(90125..90475)
/locus_tag="Dgeo_0095"
/note="SNARE associated Golgi protein; Region:
SNARE_assoc; pfam09335"
/db_xref="CDD:204201"
gene 90628..91344
/locus_tag="Dgeo_0096"
/db_xref="GeneID:4058693"
CDS 90628..91344
/locus_tag="Dgeo_0096"
/note="TIGRFAM: HAD-superfamily hydrolase subfamily IA,
variant 3: (1e-15);
PFAM: Haloacid dehalogenase-like hydrolase: (2.6e-33);
KEGG: dra:DR2613 hydrolase, CbbY/CbbZ/GpH/YieH family,
ev=1e-100, 77% identity"
/codon_start=1
/transl_table=11
/product="HAD family hydrolase"
/protein_id="YP_603568.1"
/db_xref="GI:94984204"
/db_xref="InterPro:IPR005833"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006402"
/db_xref="GeneID:4058693"
/translation="MSAAPYTARMTWPASLRALIFDFDGTILDTETREFHHWQALYRT
HGRELALGDWQRGIGTWNAFDPWAGLPEHVQADRERVRAELHERILADIAEQDLRPGV
RAVLEEARTAGLRLALATSSDRAWVTRWLAQHELLDLFEVLATRDDVRHVKPDPELYA
LATARLGLPPAACLAVEDSLNGATAALAAGVRVVVVPNDVTRTQPFPPEWPRLEDGFA
GGLAALLRAGGVLRKTRPRR"
misc_feature 90673..91173
/locus_tag="Dgeo_0096"
/note="beta-phosphoglucomutase family hydrolase; Region:
PGMB-YQAB-SF; TIGR02009"
/db_xref="CDD:162658"
misc_feature 90883..91170
/locus_tag="Dgeo_0096"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 90985..90987
/locus_tag="Dgeo_0096"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(91376..92311)
/locus_tag="Dgeo_0097"
/db_xref="GeneID:4058694"
CDS complement(91376..92311)
/locus_tag="Dgeo_0097"
/note="TIGRFAM: Twin-arginine translocation pathway
signal: (0.015);
KEGG: dra:DRB0118 dessication-associated protein,
ev=1e-117, 75% identity"
/codon_start=1
/transl_table=11
/product="twin-arginine translocation pathway signal"
/protein_id="YP_603569.1"
/db_xref="GI:94984205"
/db_xref="InterPro:IPR006311"
/db_xref="GeneID:4058694"
/translation="MSNDTQGLSTRRRFLGMAGMMGAGAVLSGCTSVIATQPGKANLD
AAIFNFALNLEYLEAAFYLAATGRLGELTAVGGDASKVILPSGFTGSSPVPGLTGDLL
ARANEIADDEKAHVKVIRAVLGNAAVPQPRLDLSASFVAAGKAASGGKIDNFNPFANE
LFFLHGAFVFEDVGVSAYKGAARFLVDDKAGGNLENAAGILAVEAYHAGEIRSELYRR
RGEAAAAGLTVEQVVQAISDLRDSVDGSSDDDQGISNMGASANIVLADGNGIAFSRTP
RQVGNIVFLSAGATKGGFFPDGLSDDGNLGKLLAL"
misc_feature complement(91664..>92026)
/locus_tag="Dgeo_0097"
/note="Ferritin-like domain; Region: Ferritin_2;
pfam13668"
/db_xref="CDD:205845"
gene complement(92543..93220)
/locus_tag="Dgeo_0098"
/db_xref="GeneID:4058695"
CDS complement(92543..93220)
/locus_tag="Dgeo_0098"
/note="PFAM: NAD-dependent epimerase/dehydratase: (0.002)
short-chain dehydrogenase/reductase SDR: (5.2e-08);
KEGG: dra:DR0543 oxidoreductase, short-chain
dehydrogenase/reductase family, ev=6e-98, 79% identity"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_603570.1"
/db_xref="GI:94984206"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4058695"
/translation="MANLGSSTIMLTGAGGALATAIAQELEDAGAQLVLVGRGEALER
AADRFPATEVLDLDLRDPTSVDALRRVKVDALVHTVGAYAAQDVQKATDEDLRLMFDT
NMLTLFHAVQGVLPHMLRQKDGLIMGVSSGTAARLSGPKAALYTASKAAVAAYILSLH
DELKAKGVRGCVLYPMGAIDTPKNRDAGMDWDRLIDPRGLAKSVAHALTRPDRAHLTE
LKIYPDA"
misc_feature complement(92546..93151)
/locus_tag="Dgeo_0098"
/note="Short-chain alcohol dehydrogenase of unknown
specificity [General function prediction only]; Region:
COG4221"
/db_xref="CDD:33946"
misc_feature complement(92588..93151)
/locus_tag="Dgeo_0098"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature complement(order(92675..92680,92684..92692,92696..92698,
92774..92776,92786..92788,92828..92836,92915..92917,
92978..92986,93044..93052,93107..93112))
/locus_tag="Dgeo_0098"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature complement(order(92774..92776,92786..92788,92828..92830,
92912..92914))
/locus_tag="Dgeo_0098"
/note="active site"
/db_xref="CDD:212491"
gene complement(93423..94889)
/locus_tag="Dgeo_0099"
/db_xref="GeneID:4058696"
CDS complement(93423..94889)
/locus_tag="Dgeo_0099"
/note="TIGRFAM: UDP-N-acetylmuramyl-tripeptide
synthetases: (1e-239);
PFAM: cytoplasmic peptidoglycan synthetase-like: (4.3e-17)
cytoplasmic peptidoglycan synthetases-like: (6e-15) Mur
ligase, middle region: (2.2e-70);
KEGG: dra:DR0297
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase, ev=0.0, 80% identity"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramyl-tripeptide synthetases"
/protein_id="YP_603571.1"
/db_xref="GI:94984207"
/db_xref="InterPro:IPR000713"
/db_xref="InterPro:IPR004101"
/db_xref="InterPro:IPR005761"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:4058696"
/translation="MRLPDLAAALSTPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGA
RFDGHSFLPEVAARGAVAVLGEGLPADVASPLPYLSVPNARAALADAAAALAGHPSRA
LKVVGVTGTDGKTTTSWLTRHLLRAAGLRTGLLSTVGYELPDGVLRHFPAHFTTPEAP
QVQTTLRALLEAGGEAAVLEASSHALALDRVRGVDWDVAVWTHLSSEHLDFHGTLENY
FADKRKLIERAPFAVLNVDDPWTAQLRGVAPQETTYSAENQHADWQARHIEERATGLH
FQVASPLGEFAAHLPMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPGRMEL
VPGGASDPRVIVDFAHTPPSLEKALTTLRATTGGRLWVLLGSAGGPRDPGKRAPLGEV
ATRLADHAVFTEEDCRDTPLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARP
GDTVLLAGKGPEDTLERNGEVIAWNEVEEAREALAARA"
misc_feature complement(93465..94829)
/locus_tag="Dgeo_0099"
/note="UDP-N-acetylmuramyl-tripeptide synthetase; Region:
murE; TIGR01085"
/db_xref="CDD:211623"
misc_feature complement(94641..94829)
/locus_tag="Dgeo_0099"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature complement(93996..94427)
/locus_tag="Dgeo_0099"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature complement(93666..93908)
/locus_tag="Dgeo_0099"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 94990..95373
/locus_tag="Dgeo_0100"
/db_xref="GeneID:4058697"
CDS 94990..95373
/locus_tag="Dgeo_0100"
/note="PFAM: regulatory protein, ArsR: (2.7e-15);
KEGG: dra:DRA0071 transcriptional repressor SmtB,
ev=3e-35, 66% identity"
/codon_start=1
/transl_table=11
/product="ArsR family transcriptional regulator"
/protein_id="YP_603572.1"
/db_xref="GI:94984208"
/db_xref="InterPro:IPR001845"
/db_xref="GeneID:4058697"
/translation="MLPVSTSAQADTCEVSCVHPEAVARARAAQPDEAALVRAAALLK
AVSDPTRLRLLTALGTGELCVCDLALIAGTSESAVSHQLRLLREQNLVLPRKEGRVVY
YRLADAHVTDLLRNVLEHVGEGAGA"
misc_feature <95179..95346
/locus_tag="Dgeo_0100"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature order(95179..95181,95188..95190,95314..95316)
/locus_tag="Dgeo_0100"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
misc_feature order(95179..95187,95212..95223,95227..95232,95239..95244,
95248..95253,95269..95277,95290..95298)
/locus_tag="Dgeo_0100"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature order(95257..95259,95314..95319,95323..95331,95335..95343)
/locus_tag="Dgeo_0100"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
gene complement(95398..96021)
/locus_tag="Dgeo_0101"
/db_xref="GeneID:4058698"
CDS complement(95398..96021)
/locus_tag="Dgeo_0101"
/note="PFAM: deoxynucleoside kinase: (1.2e-39);
KEGG: dra:DR0298 deoxyguanosine kinase/deoxyadenosine
kinase subunit, ev=2e-99, 83% identity"
/codon_start=1
/transl_table=11
/product="deoxynucleoside kinase"
/protein_id="YP_603573.1"
/db_xref="GI:94984209"
/db_xref="InterPro:IPR002624"
/db_xref="GeneID:4058698"
/translation="MYLALSGNIGSGKSTLTRMLAERYGLRPVYEPYAENPYLEDFYR
DMRRYSFHSQVYFLSRRLEQHLNLVTGARYVIQDRTVFEDANIFARNLFESGQMEARD
WATYLGLYQGILPALRVPDLLIHIDASVPTLKKRIAQRGRAYEKAIPDTYLAGLNRLY
AQWIENFDACPVMRVPGDELDFVQDPAAFRWVCDRVQAYGFGLPLLR"
misc_feature complement(95404..96021)
/locus_tag="Dgeo_0101"
/note="Deoxynucleoside kinases [Nucleotide transport and
metabolism]; Region: COG1428"
/db_xref="CDD:31617"
misc_feature complement(95464..96018)
/locus_tag="Dgeo_0101"
/note="Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family consists
of various deoxynucleoside kinases including deoxyribo-
cytidine (EC 2.7.1.74), guanosine (EC 2.7.1; Region: dNK;
cd01673"
/db_xref="CDD:30191"
misc_feature complement(order(95587..95589,95602..95604,95758..95760,
95860..95865,95893..95895,95980..95985,95989..95991))
/locus_tag="Dgeo_0101"
/note="Substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:30191"
misc_feature complement(95839..95841)
/locus_tag="Dgeo_0101"
/note="Substrate specificity [chemical binding]; other
site"
/db_xref="CDD:30191"
gene complement(96083..96700)
/locus_tag="Dgeo_0102"
/db_xref="GeneID:4058699"
CDS complement(96083..96700)
/locus_tag="Dgeo_0102"
/note="PFAM: deoxynucleoside kinase: (8.5e-18);
KEGG: dra:DR0299 deoxyguanosine kinase/deoxyadenosine
kinase subunit, ev=2e-74, 72% identity"
/codon_start=1
/transl_table=11
/product="deoxynucleoside kinase"
/protein_id="YP_603574.1"
/db_xref="GI:94984210"
/db_xref="InterPro:IPR002624"
/db_xref="GeneID:4058699"
/translation="MYLVVEGPIGVGKTSLAGRLAARYGAALNLEVVEENPFLARFYE
APETYAFQVQVFFLLSRFKQLSKLAQPGLWSGNVVSDYLFDKDFIFAAMNLKDAEFAL
YEDLYAHLSPRLPTPDLVIYLRAEPELLLARIEQRGRPFERAMQADYLRELTARYDAY
FRTYPGHVLTVDASHYDFVCRPDDEQALLAHIAAALPTRTEEGTA"
misc_feature complement(96113..96700)
/locus_tag="Dgeo_0102"
/note="Deoxynucleoside kinases [Nucleotide transport and
metabolism]; Region: COG1428"
/db_xref="CDD:31617"
misc_feature complement(96164..96697)
/locus_tag="Dgeo_0102"
/note="Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family consists
of various deoxynucleoside kinases including deoxyribo-
cytidine (EC 2.7.1.74), guanosine (EC 2.7.1; Region: dNK;
cd01673"
/db_xref="CDD:30191"
misc_feature complement(order(96275..96277,96290..96292,96428..96430,
96539..96544,96572..96574,96659..96664,96668..96670))
/locus_tag="Dgeo_0102"
/note="Substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:30191"
misc_feature complement(96518..96520)
/locus_tag="Dgeo_0102"
/note="Substrate specificity [chemical binding]; other
site"
/db_xref="CDD:30191"
gene complement(96805..97908)
/locus_tag="Dgeo_0103"
/db_xref="GeneID:4058700"
CDS complement(96805..97908)
/locus_tag="Dgeo_0103"
/note="PFAM: peptidase S1 and S6, chymotrypsin/Hap:
(0.00016);
SMART: PDZ/DHR/GLGF: (4.7e-09);
KEGG: dra:DR0300 serine protease Do, , ev=1e-109, 74%
identity"
/codon_start=1
/transl_table=11
/product="peptidase S1 and S6, chymotrypsin/Hap"
/protein_id="YP_603575.1"
/db_xref="GI:94984211"
/db_xref="InterPro:IPR001254"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR001940"
/db_xref="InterPro:IPR008256"
/db_xref="GeneID:4058700"
/translation="MKPALRAAGILLLLAGAVTGAYVTGRVSAQRALVTPDEINTVEV
TQKALQAVVRVDNRLRKDVLQPGDDPVETGSGFFYKQNLIVTNYHVIQDQESVSVTLY
NGRRVPARVEGIDPGIDIAILRVTGVTAPKTLSFGRSAGLIPGQKLITIGTPLKIQNF
VTTGVFSVLASARDVPRNDQLGQEIGQYLITSANIQQGNSGGPVLDSRGAVVGVADAN
AAPNSFVPGVIGIAIPGDLVRQSLDDLEKIGVPQRGTLGVTLVDLDSLDPALRQLAGL
SSSEGALVDEVPAGTAGARAGLRGSLRNSRGQLLAPLGDVIVSVDGQRVRNSFDVIRL
VAAKRPGQTVTLRVWRNKKPVDVKVTLQKRTLQ"
misc_feature complement(97285..97689)
/locus_tag="Dgeo_0103"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature complement(96832..97149)
/locus_tag="Dgeo_0103"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature complement(order(96913..96918,96925..96930,97129..97131,
97135..97146))
/locus_tag="Dgeo_0103"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
gene complement(97905..98114)
/locus_tag="Dgeo_0104"
/db_xref="GeneID:4058701"
CDS complement(97905..98114)
/locus_tag="Dgeo_0104"
/note="KEGG: dra:DR0301 hypothetical protein, ev=4e-23,
72% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603576.1"
/db_xref="GI:94984212"
/db_xref="GeneID:4058701"
/translation="MPTYVYKNLETGELYEIKQSMRDEPLTRHPETAAPIKRVLSTPG
IAFRGSGFYVTDSRPKPAGEGGGGE"
misc_feature complement(97908..98114)
/locus_tag="Dgeo_0104"
/note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS;
cl00993"
/db_xref="CDD:207275"
misc_feature complement(97962..98114)
/locus_tag="Dgeo_0104"
/note="putative regulatory protein, FmdB family; Region:
CxxC_CxxC_SSSS; TIGR02605"
/db_xref="CDD:211756"
gene complement(98248..100086)
/locus_tag="Dgeo_0105"
/db_xref="GeneID:4058702"
CDS complement(98248..100086)
/locus_tag="Dgeo_0105"
/note="PFAM: acyl-CoA dehydrogenase-like: (4.3e-22)
Acyl-CoA dehydrogenase, type 2-like: (0.004);
KEGG: dra:DR2361 acyl-CoA dehydrogenase, , ev=0.0, 82%
identity"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase"
/protein_id="YP_603577.1"
/db_xref="GI:94984213"
/db_xref="InterPro:IPR005829"
/db_xref="InterPro:IPR006090"
/db_xref="InterPro:IPR006091"
/db_xref="InterPro:IPR013107"
/db_xref="GeneID:4058702"
/translation="MPQYKAPLRDIKFLMHELLDAPRVLAGLPFYAQNETADADLMNQ
VLEEGARFVETELVPLNQIGDQEGCTRHEDGSVTTPTGFKAAYEKYRQAGWTALDADP
AYGGQGMPHLVSTVMSEMITSANVAWGMYPGLSHGAYSALSAVGSEELKNLYLPKLVS
GEWTGTMCLTEPHAGTDLGIIRTKATDNGDGTYAITGTKIFISAGEHDLAENILHLVL
ARLEGSPMGTKGISLFLVPKFIPNADGTLGERNAVVCGSLEHKMGIHGNATAVLNFDG
AKGYLVGEINKGMNHMFIMMNAARLGTGLQGLGLGEVAYQNALAYAKERLQMRHEPRV
KPSEPADPIIVHPDVRRMLLTGKAYTEAGRALAMWLALNIDLEHHHPDEAGRQEAADL
VALLTPVAKAFMTDNGFQTAVLSQQVFGGHGYIREWGMEQFVRDARIGQIYEGTNGIQ
ALDLLGRKVLMDGGKKLQKLAGMLQQFVEENAEDEQLAPYLDQLSKAASQLGTLTMVI
GQKAMQGPEGADEVNAAAVDYLRYFGHVVYGYLWARMAKLAQQKIDAGQDRDGFYLSK
VQTARFYFSKLFPETKMLAATIKAGNEPLAVDDRAVFGLEQNLVEA"
misc_feature complement(99991..100083)
/locus_tag="Dgeo_0105"
/note="Acyl-CoA dehydrogenase N terminal; Region:
AcylCoA_DH_N; pfam12418"
/db_xref="CDD:204911"
misc_feature complement(98350..100080)
/locus_tag="Dgeo_0105"
/note="acyl-CoA dehydrogenase; Provisional; Region:
PTZ00456"
/db_xref="CDD:185635"
misc_feature complement(98710..99954)
/locus_tag="Dgeo_0105"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature complement(order(98743..98745,98749..98751,98755..98763,
99478..99480,99484..99486,99580..99582,99586..99588,
99676..99678))
/locus_tag="Dgeo_0105"
/note="active site"
/db_xref="CDD:173838"
misc_feature complement(98302..98679)
/locus_tag="Dgeo_0105"
/note="Acetyl-CoA dehydrogenase C-terminal like; Region:
Acyl-CoA_dh_C; pfam12806"
/db_xref="CDD:205085"
gene 100320..101084
/locus_tag="Dgeo_0106"
/db_xref="GeneID:4058703"
CDS 100320..101084
/locus_tag="Dgeo_0106"
/note="PFAM: cyclic nucleotide-binding: (2.5e-29)
regulatory protein, Crp: (4.9e-08);
KEGG: dra:DR2362 transcriptional regulator, ev=1e-112, 89%
identity"
/codon_start=1
/transl_table=11
/product="Crp/FNR family transcriptional regulator"
/protein_id="YP_603578.1"
/db_xref="GI:94984214"
/db_xref="InterPro:IPR000595"
/db_xref="InterPro:IPR001808"
/db_xref="InterPro:IPR012318"
/db_xref="GeneID:4058703"
/translation="MALALPARLLFGVSLSVSGILIRIMNYPSLVWHLKRTELFADLE
LAELEQVAAATPYRSYRPGEVIYRMDDPADALYFVRSGLVKISKLFPNGKEAILGVIG
QHDTFGELLLQPEERRPTQAEALERTTLIVLPRAELQKLLDTKPALAMKLIRLMAARL
FEAQSWTATVSAYSAPERVASLLYRLAREFGRPHAQGVELALKLNQEDIARMVGATRE
TVSHSLSKLKQEGAISRARTPMVVRLDELKRYLEEE"
misc_feature 100491..100778
/locus_tag="Dgeo_0106"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:28920"
misc_feature 100506..101045
/locus_tag="Dgeo_0106"
/note="global nitrogen regulator NtcA, cyanobacterial;
Region: NtcA_cyano; TIGR03697"
/db_xref="CDD:163409"
misc_feature order(100641..100646,100671..100679)
/locus_tag="Dgeo_0106"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:28920"
misc_feature order(100737..100745,100755..100763)
/locus_tag="Dgeo_0106"
/note="flexible hinge region; other site"
/db_xref="CDD:28920"
misc_feature 100848..101024
/locus_tag="Dgeo_0106"
/note="helix_turn_helix, cAMP Regulatory protein
C-terminus; DNA binding domain of prokaryotic regulatory
proteins belonging to the catabolite activator protein
family; Region: HTH_CRP; cd00092"
/db_xref="CDD:28976"
misc_feature 100851..100856
/locus_tag="Dgeo_0106"
/note="putative switch regulator; other site"
/db_xref="CDD:28976"
misc_feature order(100926..100928,100932..100940,100965..100967)
/locus_tag="Dgeo_0106"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:28976"
misc_feature 100965..100985
/locus_tag="Dgeo_0106"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28976"
misc_feature order(100968..100973,100983..100985)
/locus_tag="Dgeo_0106"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28976"
misc_feature 100968..100973
/locus_tag="Dgeo_0106"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:28976"
gene complement(101097..101747)
/locus_tag="Dgeo_0107"
/db_xref="GeneID:4058704"
CDS complement(101097..101747)
/locus_tag="Dgeo_0107"
/note="PFAM: HhH-GPD: (3.2e-21);
KEGG: dra:DR2584 DNA-3-methyladenine glycosidase II, ,
ev=2e-62, 61% identity"
/codon_start=1
/transl_table=11
/product="HhH-GPD"
/protein_id="YP_603579.1"
/db_xref="GI:94984215"
/db_xref="InterPro:IPR003265"
/db_xref="GeneID:4058704"
/translation="MPPVLPASLPLTDHAAALAWLARDPALADVLARTPPLPVLTPTP
HPFGTLVRSVVGQQLSTQAAASIAARLEDALGGVEPEALLRTPPDKLRALGLSWAKVR
TVRALADAALSGQVDFAHLSSLPDAAVIDALTPLPGIGRWTVEMFLMFGLARPDVFSF
GDLVLRQGLSRLYPHVAPGSAQAAVVAAWSPYRTLAARVLWAERRTDKERGASDPL"
misc_feature complement(101112..>101609)
/locus_tag="Dgeo_0107"
/note="3-methyladenine DNA glycosylase/8-oxoguanine DNA
glycosylase [DNA replication, recombination, and repair];
Region: AlkA; COG0122"
/db_xref="CDD:30471"
misc_feature complement(<101229..101609)
/locus_tag="Dgeo_0107"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature complement(order(101448..101450,101559..101561,
101568..101576))
/locus_tag="Dgeo_0107"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature complement(101319..101342)
/locus_tag="Dgeo_0107"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature complement(101262..101264)
/locus_tag="Dgeo_0107"
/note="active site"
/db_xref="CDD:28938"
gene 101875..102336
/locus_tag="Dgeo_0108"
/db_xref="GeneID:4058705"
CDS 101875..102336
/locus_tag="Dgeo_0108"
/note="KEGG: dvu:DVU0354 hypothetical protein, ev=3e-07,
30% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603580.1"
/db_xref="GI:94984216"
/db_xref="GeneID:4058705"
/translation="MKRLATVLLAALLATPAFAQGITITRPTPSPASAATLPNLSEVP
AGWRVVSGRVRAPRDIRLPAGSTVTVSLEDVTLVNRPATILLKASFSTPRLSAPYQLQ
FNPVRLNPRRVYAVTANVYGPDGRLLYRSGAAQELPQGRNVVMDLRVVPVR"
misc_feature <102022..102333
/locus_tag="Dgeo_0108"
/note="Type III secretion system lipoprotein chaperone
(YscW); Region: YscW; cl15825"
/db_xref="CDD:210225"
gene complement(102407..103123)
/locus_tag="Dgeo_0109"
/db_xref="GeneID:4058706"
CDS complement(102407..103123)
/locus_tag="Dgeo_0109"
/note="PFAM: NAD-dependent epimerase/dehydratase: (0.0011)
short-chain dehydrogenase/reductase SDR: (3.3e-13);
KEGG: ttj:TTHA0461 dihydropteridine/dihydrofolate
reductase, ev=3e-61, 55% identity"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_603581.1"
/db_xref="GI:94984217"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4058706"
/translation="MRGTALVTGAARGIGRALALALAAEGYALAVHYRGSAADARETA
RLCEEKGVPATTLQADVTDPAQARRLVREAHTAFPPLPLAVLVNNVGNYVHRPLLETT
DAEWADMLASNLTATFATCQAAAPLMQAAGFGRIVNLGYAGARHLVARPGIVPYVIAK
AGVLQLSQALGKVLAGSGVSVNVVSPGVIETSVSQPLREIPAGRAGTVAELVDAALYF
VRASDYITGQELEVAGGWNL"
misc_feature complement(102413..103114)
/locus_tag="Dgeo_0109"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(102416..103111)
/locus_tag="Dgeo_0109"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05557"
/db_xref="CDD:180126"
misc_feature complement(order(102557..102568,102644..102646,
102656..102658,102695..102697,102704..102709,
102851..102859))
/locus_tag="Dgeo_0109"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(102644..102646,102656..102658,
102695..102697,102785..102787))
/locus_tag="Dgeo_0109"
/note="active site"
/db_xref="CDD:187535"
gene complement(103120..103530)
/locus_tag="Dgeo_0110"
/db_xref="GeneID:4058707"
CDS complement(103120..103530)
/locus_tag="Dgeo_0110"
/note="PFAM: NUDIX hydrolase: (3.6e-25);
KEGG: syn:sll1537 hypothetical protein, ev=2e-40, 59%
identity"
/codon_start=1
/transl_table=11
/product="NUDIX hydrolase"
/protein_id="YP_603582.1"
/db_xref="GI:94984218"
/db_xref="InterPro:IPR000086"
/db_xref="GeneID:4058707"
/translation="MNRPVVCVGALVWGPDGQVLLVRTTKWRGLWGVPGGKVDWGETL
AEAVQREFREETGLTLRDIRYAQTQEAVLSEEFHKPAHMVLVDFFARTDTTAITPNEE
IEAWVWVPLAEAAGYPLNTVTRMLVELAQTWEEA"
misc_feature complement(103147..103521)
/locus_tag="Dgeo_0110"
/note="Members of the Nudix hydrolase superfamily catalyze
the hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+, for their
activity and contain a highly...; Region:
Nudix_Hydrolase_37; cd04696"
/db_xref="CDD:72931"
misc_feature complement(103357..103425)
/locus_tag="Dgeo_0110"
/note="nudix motif; other site"
/db_xref="CDD:72931"
gene complement(103615..105096)
/locus_tag="Dgeo_0111"
/db_xref="GeneID:4058708"
CDS complement(103615..105096)
/locus_tag="Dgeo_0111"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component: (2.9e-36) ABC transporter
related: (3.5e-51);
SMART: ATPase: (2.8e-21);
KEGG: dra:DR0511 ABC transporter ATP-binding protein,
ev=1e-177, 69% identity"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_603583.1"
/db_xref="GI:94984219"
/db_xref="InterPro:IPR000515"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4058708"
/translation="MSTPQPGETAIRLENVTVRLGGQSVLEDVSLTVPRGEFLAVIGP
SGGGKSTLLRVLAGLLRPQAGRVYVASPPALMFQDNRLLPWRTALRNVQLPRDLGAGS
GLNPREALHMVGLDAYADYYPAQLSGGMRARVALARALAQSHDVLLLDEPFAALDALV
RERFNAELRRLHDKTGRTTVLVTHSIREAVWLADRVAVLRDGHIVEVLDTRGAGRVTA
YTDGLEAELRALLGTGDSTRITVDTPAPLRLGWLAPTAALLAGLLLWALGAQALNQPF
LLPSPAHVWAELRKTPGEFLASTWATARVTLLGALLGSLAGALIGYPLAKSRPLERFL
SPFVVASQSAPIVVLAPLLITWFGFGTVPAVLVSALSALYPVMVATIVGVREVPATSY
ELFATLGATPWQRLTRLELPAALPVMLGGLRLALSLALIGAVVWEFVSNQPGLGFAVN
QARAYYNTPRQFAAIALLIGLGVLLYLGVTVLERRVLRHRGVR"
misc_feature complement(104470..105066)
/locus_tag="Dgeo_0111"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature complement(104479..105066)
/locus_tag="Dgeo_0111"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:31331"
misc_feature complement(104947..104970)
/locus_tag="Dgeo_0111"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(order(104545..104547,104644..104649,
104863..104865,104944..104952,104956..104961))
/locus_tag="Dgeo_0111"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature complement(104863..104874)
/locus_tag="Dgeo_0111"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature complement(104692..104721)
/locus_tag="Dgeo_0111"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature complement(104644..104661)
/locus_tag="Dgeo_0111"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature complement(104626..104637)
/locus_tag="Dgeo_0111"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(104539..104559)
/locus_tag="Dgeo_0111"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
misc_feature complement(103624..104277)
/locus_tag="Dgeo_0111"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(<103843..104139)
/locus_tag="Dgeo_0111"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(103879..103881,103930..103932,
103939..103944,103954..103956,103960..103965,
103972..103974,103978..103980,103984..103989,
104035..104037,104041..104046,104053..104082,
104086..104097,104125..104130,104137..104139))
/locus_tag="Dgeo_0111"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(104035..104079)
/locus_tag="Dgeo_0111"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(103858..103860,103870..103875,
103891..103929))
/locus_tag="Dgeo_0111"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(105107..106003)
/locus_tag="Dgeo_0112"
/db_xref="GeneID:4058709"
CDS complement(105107..106003)
/locus_tag="Dgeo_0112"
/note="PFAM: protein of unknown function DUF6,
transmembrane: (3.9e-30);
KEGG: dra:DR0512 hypothetical protein, ev=1e-116, 71%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603584.1"
/db_xref="GI:94984220"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4058709"
/translation="MTSATPRLGRLDPLSLGAILVTIVFWASAFAGIRAGLDTFTPGH
LTLYRFLVASAALGAYAAVARIPVPPLADLGRIGLLSLFGITLYHVCLNYGELTVPAG
TASLIIAAGPVMTALLATRFAGERLNRLGWLGTFISLCGVALIVLGRGESLDFTRGAL
LILAAALFTSLYFVFQRPLLARMNPLHFTVWSLLLGTLPLLVFLPGFGTELARAPLPA
HLAVIYIGLFPAALAYLTWTFALSRVGASAATSFLYVSPVFAILIAWLWLNEWPTLLS
VVGGAVALAGVILVNTRGRPEA"
misc_feature complement(105563..105934)
/locus_tag="Dgeo_0112"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature complement(105185..105505)
/locus_tag="Dgeo_0112"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene 106170..106475
/locus_tag="Dgeo_0113"
/db_xref="GeneID:4058710"
CDS 106170..106475
/locus_tag="Dgeo_0113"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603585.1"
/db_xref="GI:94984221"
/db_xref="GeneID:4058710"
/translation="MDEGKSGSTPSGASYMGAGGNTPNANTNLDPSLQSGTTPADQQA
TQEIEQQHTQTEGLPTALTQQSDPARQMDNSGMLKPNGQGPDADLIGASGEDRQDDR"
gene 106584..107261
/locus_tag="Dgeo_0114"
/db_xref="GeneID:4058711"
CDS 106584..107261
/locus_tag="Dgeo_0114"
/note="PFAM: cyclase/dehydrase: (1.7e-33);
KEGG: dra:DR2377 hypothetical protein, ev=1e-101, 86%
identity"
/codon_start=1
/transl_table=11
/product="cyclase/dehydrase"
/protein_id="YP_603586.1"
/db_xref="GI:94984222"
/db_xref="InterPro:IPR005031"
/db_xref="GeneID:4058711"
/translation="MSANMYNANSKEDSKSTDQSRLISGAAGAGLLLLGLRRRGILGL
GMAAVGGYLAYRAATGNDPVMAAAGLSGNATAAKPIFVEHSIVIDRPAQQVYDYWRQL
ENLPRIMSHLESVTVLDDRRSRWVAKAPLGTHVEWEAEIVNDKPGERIGWHSLPGATV
DNAGSVQFESLPNGGTRVHVALSYRPPAGALGAAVAKLFGEEPSQQIADDLQKFKQTF
EGANPQA"
misc_feature 106719..107258
/locus_tag="Dgeo_0114"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5637"
/db_xref="CDD:35196"
misc_feature 106827..107243
/locus_tag="Dgeo_0114"
/note="Ligand-binding SRPBCC domain of an uncharacterized
subfamily of proteins; Region: SRPBCC_8; cd07817"
/db_xref="CDD:176859"
misc_feature order(106827..106829,106833..106835,106839..106841,
106866..106874,106878..106883,106926..106928,
106944..106946,106950..106952,106956..106958,
106962..106964,106998..107000,107004..107006,
107013..107015,107031..107033,107037..107039,
107070..107075,107079..107081,107085..107087,
107115..107117,107121..107123,107127..107129,
107133..107135,107178..107192,107196..107204,
107208..107216,107223..107225)
/locus_tag="Dgeo_0114"
/note="putative hydrophobic ligand binding site [chemical
binding]; other site"
/db_xref="CDD:176859"
gene complement(107434..107910)
/locus_tag="Dgeo_0115"
/db_xref="GeneID:4058712"
CDS complement(107434..107910)
/locus_tag="Dgeo_0115"
/note="KEGG: dra:DR2527 hypothetical protein, ev=3e-11,
30% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603587.1"
/db_xref="GI:94984223"
/db_xref="GeneID:4058712"
/translation="MKKSLSLLALPLALASCGLFGLPKGDVTGSIYGSPNQNGNIRLA
LIGAAGYQNNSVDQVDVGTLNPQKSVYAVTLPSSPKDGYYELLAYVDSNANNKYDADT
EKRTQSNGKVMVYSANGLGNKDGSNLLNLKPGWSLIQNGQVVKSGLPFNSYDLNWQ"
gene complement(108007..108291)
/locus_tag="Dgeo_0116"
/db_xref="GeneID:4058713"
CDS complement(108007..108291)
/locus_tag="Dgeo_0116"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603588.1"
/db_xref="GI:94984224"
/db_xref="GeneID:4058713"
/translation="MSHPTVTVRVRDALRYAQGRAARLGRTQQLELGENLFIRIAPGG
RKFLLFCLDGEPDQATARAIAEALGLKDPQYGWHQGATLRSLTVVEAGAE"
gene complement(108295..108921)
/locus_tag="Dgeo_0117"
/db_xref="GeneID:4058714"
CDS complement(108295..108921)
/locus_tag="Dgeo_0117"
/note="PFAM: regulatory protein, TetR: (6.4e-16);
KEGG: dra:DR2376 transcriptional regulator, TetR family,
ev=2e-81, 78% identity"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_603589.1"
/db_xref="GI:94984225"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:4058714"
/translation="MTDPAAPPESAAEAPAKTRREQIYDVASRLFSERGYHATSMRDL
AGELGMQGGSLYAHISGKEDLLIEIVNRAARQFDAALFTLRDDPRPADHKLREAMYRH
IRVVADNMESATVFFHEWKHLSPAAYARVTAWRDTIDTFYRELVRQGIDEGLFRHDLD
VKMTANLILSAVNWTYTWYRPGGTLTPRDVAEGYADMLLGGLRAPEEG"
misc_feature complement(108301..108873)
/locus_tag="Dgeo_0117"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(108715..108855)
/locus_tag="Dgeo_0117"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 109033..110124
/locus_tag="Dgeo_0118"
/db_xref="GeneID:4058715"
CDS 109033..110124
/locus_tag="Dgeo_0118"
/note="PFAM: aminotransferase, class I and II: (1.2e-48);
KEGG: dra:DR2461 histidinol-phosphate aminotransferase,
ev=1e-137, 67% identity"
/codon_start=1
/transl_table=11
/product="class I and II aminotransferase"
/protein_id="YP_603590.1"
/db_xref="GI:94984226"
/db_xref="InterPro:IPR001917"
/db_xref="InterPro:IPR004839"
/db_xref="GeneID:4058715"
/translation="MTTEPLPPSATVPDPAGVRPAIRAVPAYPFTPVDVPIKLDQNES
PYDFPADLKALATARMLARPWNRYPDLHAETLGARIAAYENWDPAGVVVTPGSNVLIK
LLTELAGIGQTVLTVSPTFSVYTLEAQLLGARLVQVPLQADFSLPVEGLRQALRENPP
GVLYITEPHAPTGHVDTEAAVREVVEAAGDWVVVLDEAYHQYSGTDYRALVRAGENRL
SLRTLSKAWGLAGLRLGYALASPRLAAHLRKLVPAFNVGVLAETALEVALEHPGYVQE
RAAEVQRERERLFAALRDHPTWRVIPSRSNFYLLRTPDAEAAYRHLLSHGIVVRRQDR
LPGLEGCLRVAVGTPAENDALIEAAWAFR"
misc_feature 109087..110106
/locus_tag="Dgeo_0118"
/note="Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism]; Region: HisC; COG0079"
/db_xref="CDD:30428"
misc_feature 109141..110106
/locus_tag="Dgeo_0118"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature order(109318..109326,109393..109395,109540..109542,
109627..109629,109696..109698,109702..109707,
109729..109731)
/locus_tag="Dgeo_0118"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature order(109327..109329,109423..109425,109603..109605,
109723..109731,109810..109812,109819..109821)
/locus_tag="Dgeo_0118"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature 109705..109707
/locus_tag="Dgeo_0118"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 110183..110482
/locus_tag="Dgeo_0119"
/db_xref="GeneID:4058716"
CDS 110183..110482
/locus_tag="Dgeo_0119"
/note="PFAM: protein of unknown function UPF0153:
(2.6e-13);
KEGG: dra:DR2460 hypothetical protein, ev=4e-39, 75%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603591.1"
/db_xref="GI:94984227"
/db_xref="InterPro:IPR005358"
/db_xref="GeneID:4058716"
/translation="MDPFIPPPDFAPRSPLVRDCTACGACCAAPDIHALGKPLGVPCV
HLGPDCLCGIYAVRPAVCWSYQPDWVCGEVAPLPTLEARVQRFLEIYGLEGETSR"
misc_feature 110237..>110368
/locus_tag="Dgeo_0119"
/note="Flagellin N-methylase; Region: FliB; cl00497"
/db_xref="CDD:186037"
gene complement(110479..111642)
/locus_tag="Dgeo_0120"
/db_xref="GeneID:4058717"
CDS complement(110479..111642)
/locus_tag="Dgeo_0120"
/note="PFAM: Chromate transporter: (9.3e-24);
KEGG: dra:DR2413 chromate transport protein, ev=1e-127,
62% identity"
/codon_start=1
/transl_table=11
/product="chromate transporter"
/protein_id="YP_603592.1"
/db_xref="GI:94984228"
/db_xref="InterPro:IPR003370"
/db_xref="GeneID:4058717"
/translation="MAAREVFLVFLRLGLTSFGGPVAHLGFFRHELVERRRWLSESGY
ADVVALAQFLPGPTSSQVGMTLGLLRGGWPGLLAAWLGFTLPSALLMFAFALGITRLG
NVTDAGWLLGLKVAAAAVVAQAVAGMWGSLVGTDRLRVALALGVAAALLLLPGAGAQV
LALALCALIGWRLLPPGERGTGHLPRVPVSQPVATVLLLTCGLGLFTLPLLAPLAPEW
ALLNATFRAGALVFGGGHVVLPLLEAGFVPQFLPHETFVAGYGAANALPGPLFTFASY
LGAAQRTLPAWQGAIIATLGVFLPGALLISGALPFWARFAALPAARSALAGLNAGVVG
LLLAALYTPVFTSSIHSPAEAALALLAYAALTAGRWPAWAVVGACVALGAVLL"
misc_feature complement(<111334..111630)
/locus_tag="Dgeo_0120"
/note="Chromate transporter; Region: Chromate_transp;
pfam02417"
/db_xref="CDD:190304"
misc_feature complement(<110722..110970)
/locus_tag="Dgeo_0120"
/note="Chromate transporter; Region: Chromate_transp;
pfam02417"
/db_xref="CDD:190304"
gene complement(111733..112827)
/locus_tag="Dgeo_0121"
/db_xref="GeneID:4058718"
CDS complement(111733..112827)
/locus_tag="Dgeo_0121"
/note="PFAM: fatty acid desaturase, type 2: (8.6e-06);
KEGG: bcz:BCZK2881 possible acyl-[acyl-carrier protein]
desaturase, ev=3e-16, 27% identity"
/codon_start=1
/transl_table=11
/product="fatty acid desaturase"
/protein_id="YP_603593.1"
/db_xref="GI:94984229"
/db_xref="InterPro:IPR005067"
/db_xref="GeneID:4058718"
/translation="MADILPPNMLNERPRTPAGLLSNQEKDRLIERGFLGLYRWYTAR
SQETRNWNPDRSFDWRHMNQNLPPEVITIIQGFFAVEQYAPDFTSNLVNLVRRSHGRS
HFQLRWGSEEEKHADAWENAVLFSGQRSPEWIAEYKDRLRSQTWELPFPDAIHNLVYT
VFQERATQLNYLNMMKIAQGRSEKPHLQGVTDPVLAKVAQTIAVDEAAHYNFFLEGVR
MYLYYYPERTLEAIKNVISQFSMPAATLVPNWQEFYETVYRAGIYGPRDFSRDVMQVA
FRNLGIESRKALEEGIRKTREVPDFEGGNFKTTAIWDTFDYGAVEGDVRRLHVKIQDY
EKGIGFDLYDPTEFVENPEVPKKPGQAADD"
misc_feature complement(111937..112656)
/locus_tag="Dgeo_0121"
/note="Ferritin-like superfamily of diiron-containing
four-helix-bundle proteins; Region: Ferritin_like;
cl00264"
/db_xref="CDD:213088"
misc_feature complement(order(112201..112203,112210..112212,
112336..112338,112483..112485,112492..112494,
112585..112587))
/locus_tag="Dgeo_0121"
/note="dinuclear metal binding motif [ion binding]; other
site"
/db_xref="CDD:153097"
gene 113033..113488
/locus_tag="Dgeo_0122"
/db_xref="GeneID:4058719"
CDS 113033..113488
/locus_tag="Dgeo_0122"
/note="PFAM: alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen: (1e-16) Redoxin: (5.3e-22);
KEGG: dra:DR2242 thiol-specific antioxidant protein, ,
ev=4e-66, 80% identity"
/codon_start=1
/transl_table=11
/product="redoxin"
/protein_id="YP_603594.1"
/db_xref="GI:94984230"
/db_xref="InterPro:IPR000866"
/db_xref="InterPro:IPR013740"
/db_xref="GeneID:4058719"
/translation="MSLLGQPAPDFTLPSTLGEPVTLSSYRGQQHVVLVFYPLDFSPV
CSMQLPEYSGRQDDFAEAGAVVLGVNRDSVYTHKAWAAEYGIEVPLLADMNLNVARQY
GVAIDERGISGRAVFLIDKGGVVRFEYVEAQTGDYTVRPELVLAKLAEL"
misc_feature 113033..>113434
/locus_tag="Dgeo_0122"
/note="Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones]; Region: AhpC; COG0450"
/db_xref="CDD:30799"
misc_feature 113045..113434
/locus_tag="Dgeo_0122"
/note="Peroxiredoxin (PRX) family, AhpE-like subfamily;
composed of proteins similar to Mycobacterium tuberculosis
AhpE. AhpE is described as a 1-cys PRX because of the
absence of a resolving cysteine. The structure and
sequence of AhpE, however, show greater...; Region:
PRX_AhpE_like; cd03018"
/db_xref="CDD:48567"
misc_feature order(113102..113107,113111..113113)
/locus_tag="Dgeo_0122"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48567"
misc_feature order(113156..113158,113165..113167,113372..113374)
/locus_tag="Dgeo_0122"
/note="catalytic triad [active]"
/db_xref="CDD:48567"
gene complement(113498..113932)
/locus_tag="Dgeo_0123"
/db_xref="GeneID:4057323"
CDS complement(113498..113932)
/locus_tag="Dgeo_0123"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603595.1"
/db_xref="GI:94984231"
/db_xref="GeneID:4057323"
/translation="MKQLLLLPALALGLSACAGSTPPLAAPTINVSGTWVATLAPGAT
FPQQVFRFTLTQRGHVLSGQAEIVPDPAGAAPPYTYDAFGQVSGIVSGDRFNFTARGT
GDFAGSVTLSGTVVENKLTGTWVGFGGQGWSDTGSFSAIPQD"
gene 114089..114976
/locus_tag="Dgeo_0124"
/db_xref="GeneID:4057324"
CDS 114089..114976
/locus_tag="Dgeo_0124"
/note="PFAM: periplasmic binding protein: (6e-33);
KEGG: dra:DRB0014 hemin transport system
substrate-binding protein, ev=1e-129, 80% identity"
/codon_start=1
/transl_table=11
/product="periplasmic binding protein"
/protein_id="YP_603596.1"
/db_xref="GI:94984232"
/db_xref="InterPro:IPR002491"
/db_xref="GeneID:4057324"
/translation="MHKILKTALLSLVLLPAASAASVKGADGVTVEVTNPKRVVALNG
TTVELIYRLGKQNTIVGTDITGTYPPNKIPSVGHWAQLPAEGIISLKPDLVIGPADNF
ATPKNTTLVQQLRAAGVKVLVLPASDTGGLDGVKTRLNLLAQVYGVPSAANALSKSFD
TTLAAVKANRPKVAPRVIFLYAHSPSDATIYGTEGGANELIELAGGKNVAPFKDTKPL
TAEALAAINPDAIIMLERGLAAVGGMEGVLKMPGVAQTNAGKNRRIYTVDNSIRWIGP
RLPEFALKLAREWKEDFGR"
misc_feature 114194..114901
/locus_tag="Dgeo_0124"
/note="Hemin binding protein HutB. These proteins have
been shown to function as initial receptors in ABC
transport of hemin and hemoproteins in many eubacterial
species. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a...;
Region: HutB; cd01149"
/db_xref="CDD:29752"
misc_feature 114203..114898
/locus_tag="Dgeo_0124"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:144914"
misc_feature 114299..114301
/locus_tag="Dgeo_0124"
/note="putative hemin binding site; other site"
/db_xref="CDD:29752"
gene 114973..116043
/locus_tag="Dgeo_0125"
/db_xref="GeneID:4057325"
CDS 114973..116043
/locus_tag="Dgeo_0125"
/note="PFAM: transport system permease: (1e-116);
KEGG: dra:DRB0015 hemin transport system permease,
ev=1e-145, 76% identity"
/codon_start=1
/transl_table=11
/product="transport system permease"
/protein_id="YP_603597.1"
/db_xref="GI:94984233"
/db_xref="InterPro:IPR000522"
/db_xref="InterPro:IPR002202"
/db_xref="GeneID:4057325"
/translation="MTTNLTSTSAPALSRQRVRARWALALLPLGLLAAVVFAVGTGAV
HIAPAQVVSILLAPLGVPPLAAYEEQQAAVLHAIRLPRVVLGLLVGAGLAVAGTAMQG
LFRNPLADPGLLGISSGAGLAAALSVVLGIHLFGTYTLPVMAFLGSVAATGVIYTLAQ
ERGRMNVATMLLAGIAVNALCGAGTGLMTYLATDEQLRTITFWQLGSLGGATWPTVLS
AAPLLLVGVLGLPLLARALNAFTLGESNAAHLGIPVTAVKWAVVGLVALSVGAGVAVA
GTIGFVGLVVPHLMRLLIGPNHATLLPTAALAGATLLVLADLLARTVVMPSELPIGIV
TALLGAPFFLYLLRQSRRGERL"
misc_feature <115180..116028
/locus_tag="Dgeo_0125"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:182563"
misc_feature 115270..116013
/locus_tag="Dgeo_0125"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(115273..115275,115285..115293,115663..115668,
115672..115680,115684..115689,115693..115710,
115714..115722,115843..115845,115864..115866)
/locus_tag="Dgeo_0125"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(115288..115290,115294..115296,115309..115311,
115477..115479,115483..115488,115495..115500,
115507..115512,115519..115521,115528..115533,
115537..115539,115573..115578,115585..115587,
115813..115815,115969..115971,115978..115983,
115990..115992,115999..116004,116011..116013)
/locus_tag="Dgeo_0125"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(115537..115539,115615..115617,115789..115791,
115801..115803,115933..115935,115960..115962)
/locus_tag="Dgeo_0125"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 116052..116885
/gene="hmuV"
/locus_tag="Dgeo_0126"
/db_xref="GeneID:4057326"
CDS 116052..116885
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="with HmuTU is involved in the transport of hemin"
/codon_start=1
/transl_table=11
/product="hemin importer ATP-binding subunit"
/protein_id="YP_603598.1"
/db_xref="GI:94984234"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4057326"
/translation="MRRLVRKTVSLPPSGAPLVEVADLNYSVSGRELLRNITFRLTDG
ELLAVLGRNGAGKSTLLRHLTGELGKEGVRMFGQPLREYAAADLARRRAALPQQTPLT
FAYEVLDVVLLGRIPHGRRETPEDREIARAALARVGLAGFEHRNILTLSGGEQQRVHL
ARVLAQLWADPAAPEQPARVLLLDEPTSSLDLAHQHATLRLARELCTQGVGVIAVLHD
LNLAAQYADRVLIVAGGRVTALGTPEAVLTPAIIEEAFGHRVAVTPHPCLNCPLIVSA
Q"
misc_feature 116100..116879
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="hemin importer ATP-binding subunit; Provisional;
Region: hmuV; PRK13548"
/db_xref="CDD:184133"
misc_feature 116109..116774
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="ABC transporters, involved in the uptake of
siderophores, heme, and vitamin B12, are widely conserved
in bacteria and archaea. Only very few species lack
representatives of the siderophore family transporters.
The E. coli BtuCD protein is an ABC...; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:72973"
misc_feature 116202..116225
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72973"
misc_feature order(116211..116216,116220..116228,116340..116342,
116601..116606,116700..116702)
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72973"
misc_feature 116331..116342
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="Q-loop/lid; other site"
/db_xref="CDD:72973"
misc_feature 116499..116528
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72973"
misc_feature 116589..116606
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="Walker B; other site"
/db_xref="CDD:72973"
misc_feature 116613..116624
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="D-loop; other site"
/db_xref="CDD:72973"
misc_feature 116688..116708
/gene="hmuV"
/locus_tag="Dgeo_0126"
/note="H-loop/switch region; other site"
/db_xref="CDD:72973"
gene 116943..117743
/locus_tag="Dgeo_0127"
/db_xref="GeneID:4057327"
CDS 116943..117743
/locus_tag="Dgeo_0127"
/note="PFAM: Siderophore-interacting protein: (9.3e-46)
FAD-binding 9, siderophore-interacting: (2.8e-24);
KEGG: reu:Reut_B4272 siderophore-interacting protein,
ev=4e-34, 40% identity"
/codon_start=1
/transl_table=11
/product="siderophore-interacting protein"
/protein_id="YP_603599.1"
/db_xref="GI:94984235"
/db_xref="InterPro:IPR007037"
/db_xref="InterPro:IPR013113"
/db_xref="GeneID:4057327"
/translation="MTTSSSRPTRPAPRLLHVRAKAQLTPNLLRLTLAGDLHDFGSGH
TFKLLIVPRGTSALPLPDAAPRPVVRTFTVRTLDRAAGELTVDMVLHGGFAAQWAWQA
EPGDPVGVVGPLGAPLPRTAGPYLIAGDHCALPAIARILEELPHDATGNVLIEVPGPA
DELPLIRPPGLRLRWLHRTGTADDETLLQDAVRALTPLPQTPTSFVWIACESASVKAL
RAYLREELGWPPQQMQLAGYWKRGVDERTYHDTAHYDHAPDEYGRGRG"
misc_feature 116943..117683
/locus_tag="Dgeo_0127"
/note="Siderophore-interacting protein [Inorganic ion
transport and metabolism]; Region: ViuB; COG2375"
/db_xref="CDD:32522"
misc_feature 116994..117662
/locus_tag="Dgeo_0127"
/note="Siderophore interacting proteins share the domain
structure of the ferredoxin reductase like family.
Siderophores are produced in various bacteria (and some
plants) to extract iron from hosts. Binding constants are
high, so iron can be pilfered from...; Region:
siderophore_interacting; cd06193"
/db_xref="CDD:99790"
misc_feature order(117150..117161,117201..117203,117207..117209,
117213..117215,117219..117230,117336..117338,
117654..117662)
/locus_tag="Dgeo_0127"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99790"
misc_feature order(117150..117152,117156..117161)
/locus_tag="Dgeo_0127"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99790"
misc_feature order(117219..117221,117228..117230,117237..117239,
117255..117257)
/locus_tag="Dgeo_0127"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99790"
misc_feature order(117336..117341,117405..117413,117570..117575)
/locus_tag="Dgeo_0127"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99790"
gene complement(117762..118406)
/locus_tag="Dgeo_0128"
/db_xref="GeneID:4057328"
CDS complement(117762..118406)
/locus_tag="Dgeo_0128"
/note="PFAM: PhoU: (1.3e-29);
KEGG: dra:DR2243 phosphate transport system regulatory
protein PhoU, ev=1e-98, 86% identity"
/codon_start=1
/transl_table=11
/product="phosphate uptake regulator PhoU"
/protein_id="YP_603600.1"
/db_xref="GI:94984236"
/db_xref="InterPro:IPR008170"
/db_xref="GeneID:4057328"
/translation="MRNALETDLRTVLNGALNMLGTVERMLPIAGEVLLHARPERLEE
VRAIDREVDAQEAQIEAECLRIIALHQPVARDLRLVALILKSLSDIERMGDYAVHVAE
DGAELAQQPALKRYVNLARMLDRLGEMSTNLRTAIADRDVTRAEATLTMDDEVDDLYE
QIQRELVTYMLEDPRNISKALMLMRVGRSLERIGDHLENVAERVRYWVTGQREA"
misc_feature complement(117771..118400)
/locus_tag="Dgeo_0128"
/note="phosphate transport system regulatory protein PhoU;
Region: phoU_full; TIGR02135"
/db_xref="CDD:162721"
misc_feature complement(118101..118358)
/locus_tag="Dgeo_0128"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:202032"
misc_feature complement(117795..118052)
/locus_tag="Dgeo_0128"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:202032"
gene complement(118468..119442)
/locus_tag="Dgeo_0129"
/db_xref="GeneID:4057329"
CDS complement(118468..119442)
/locus_tag="Dgeo_0129"
/note="PFAM: ATP-binding region, ATPase-like: (3.3e-24)
histidine kinase A-like: (1.9e-11);
KEGG: dra:DR2244 sensory transduction histidine kinase,
ev=6e-99, 82% identity"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_603601.1"
/db_xref="GI:94984237"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4057329"
/translation="MPEVLSPRKDAWLDTLPQAVLLFEVGQDALTVTRVNAAAVRLWG
VPQERAAGRPLLEIVRRHTLEALAERGGELELELGGRTLRCTATCAAPEQDGALIVED
ITAWRRREAELREATAVLSHEFRTPVTGLRGVLEALEYDMPPDLAQNFVRQGLQEVER
LARLVEDLAVGFRPTRARTLPLAEAFVRAQRLLAPELAARQTTLTFGADHLVRADPDK
LLQVLLNLIENALKYGPPGQPIEVQTLPRGSWIEVAVLDHGAPLSETESLFLAHTRGR
GAPGQGSGMGLYIVRSIVHGWGGQAWAERRDDRNAFCFTLPGGTGNSL"
misc_feature complement(118543..119406)
/locus_tag="Dgeo_0129"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature complement(118939..119085)
/locus_tag="Dgeo_0129"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(118939..118941,118951..118953,
118960..118962,118972..118974,118981..118983,
118993..118995,119041..119043,119050..119052,
119062..119064,119071..119073,119083..119085))
/locus_tag="Dgeo_0129"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(119077..119079)
/locus_tag="Dgeo_0129"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(118495..118788)
/locus_tag="Dgeo_0129"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(118507..118509,118510..118515,
118528..118530,118534..118536,118582..118593,
118657..118662,118666..118668,118672..118674,
118678..118680,118747..118749,118756..118758,
118768..118770))
/locus_tag="Dgeo_0129"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(118756..118758)
/locus_tag="Dgeo_0129"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(118585..118587,118591..118593,
118660..118662,118666..118668))
/locus_tag="Dgeo_0129"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(119442..120131)
/locus_tag="Dgeo_0130"
/db_xref="GeneID:4057330"
CDS complement(119442..120131)
/locus_tag="Dgeo_0130"
/note="PFAM: response regulator receiver: (6.9e-31)
transcriptional regulatory protein-like: (2.7e-25);
KEGG: dra:DR2245 phosphate regulon transcriptional
regulatory protein PhoB, ev=1e-104, 83% identity"
/codon_start=1
/transl_table=11
/product="two component transcriptional regulator"
/protein_id="YP_603602.1"
/db_xref="GI:94984238"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR001867"
/db_xref="GeneID:4057330"
/translation="MSHVVVIEDESTVREVLRFHLERAGLRVSALESVQGAQETLRGA
DALVLDWMLPGESGLAYLRRLRGDPELRRLPVLMLTARAAEAERVEGLESGADDYLTK
PFSAAELVARVRALLRRAQPDTPQQLSHGPLSMDLGAAEARLAGIRLHLTRREFDLLA
FLTQNAGRVYTRTELLDRVWGADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGK
GYRMRPWEGEN"
misc_feature complement(119460..120125)
/locus_tag="Dgeo_0130"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature complement(119817..120119)
/locus_tag="Dgeo_0130"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(119823..119828,119835..119837,
119892..119894,119958..119960,119982..119984,
120105..120110))
/locus_tag="Dgeo_0130"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(119982..119984)
/locus_tag="Dgeo_0130"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(119958..119966,119970..119975))
/locus_tag="Dgeo_0130"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(119820..119828)
/locus_tag="Dgeo_0130"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(119466..119750)
/locus_tag="Dgeo_0130"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(119475..119477,119490..119492,
119526..119531,119553..119555,119562..119564,
119616..119621,119676..119678))
/locus_tag="Dgeo_0130"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(120210..120596)
/locus_tag="Dgeo_0131"
/db_xref="GeneID:4057331"
CDS complement(120210..120596)
/locus_tag="Dgeo_0131"
/note="PFAM: Iojap-related protein: (1.9e-29);
KEGG: dra:DR2580 hypothetical protein, ev=1e-49, 87%
identity"
/codon_start=1
/transl_table=11
/product="Iojap-related protein"
/protein_id="YP_603603.1"
/db_xref="GI:94984239"
/db_xref="InterPro:IPR004394"
/db_xref="GeneID:4057331"
/translation="MTPHSQNEHLQQQLRAIVDAARERRAEDVVVLDLTDVSSTLEYF
VICTATAGLQLNAVQENIREKAQEAGLPRPTVEGPSERWLLLAFGGSIVVHIMTREAR
EYYDLEGLWSDARVLDFPEQTPNQTV"
misc_feature complement(120264..120557)
/locus_tag="Dgeo_0131"
/note="Oligomerisation domain; Region: Oligomerisation;
pfam02410"
/db_xref="CDD:190302"
gene complement(120619..121899)
/locus_tag="Dgeo_0132"
/db_xref="GeneID:4057332"
CDS complement(120619..121899)
/locus_tag="Dgeo_0132"
/note="TIGRFAM: cell envelope-related function
transcriptional attenuator common domain: (2.7e-73);
PFAM: cell envelope-related transcriptional attenuator:
(2e-49);
KEGG: dra:DR2581 LytR/CspA/Psr family protein, ev=1e-142,
65% identity"
/codon_start=1
/transl_table=11
/product="cell envelope-related transcriptional
attenuator"
/protein_id="YP_603604.1"
/db_xref="GI:94984240"
/db_xref="InterPro:IPR004474"
/db_xref="GeneID:4057332"
/translation="MTVAPRPPHNPGLSPRRRSRLRAVQFFGLSLAALTLGGFAVLSA
PGTAAPTATTGRGLPQFTLLLAGRDIVYCYYRTPCKNQDQRTGLLQPPNTDTLMLVKV
DGTRVDVLNIPRDTNVGDFDPRQSPASQKVNSRYWSGGPQALVQAVETITGEHVDSYV
IVRTDYVARVIDALGGLDVTVPPGGIAWVDQAAGVNLKLPAGQHHLNGEQAVLFLRVR
KGFGDDYGRIDHQKQALTQLAARLKSSQGLKALPTILGGIGHGVETNADPKLLTTLLP
ELPQLKLTFATLPTQTIRGTFNLAADREALARVWGKGADEETSGAATPLLTDITVRIV
DASGAALGPVLARALRTLGYSRVTVQNAPTSGEASQVFTQQDVRAANQLSATLGLPRL
QGERFPVEAGEVGILLGTDARQSLAALHALNSAP"
misc_feature complement(121168..121626)
/locus_tag="Dgeo_0132"
/note="Cell envelope-related transcriptional attenuator
domain; Region: LytR_cpsA_psr; cl00581"
/db_xref="CDD:207116"
misc_feature complement(120667..120918)
/locus_tag="Dgeo_0132"
/note="LytR cell envelope-related transcriptional
attenuator; Region: LytR_C; pfam13399"
/db_xref="CDD:205577"
gene complement(121896..122510)
/locus_tag="Dgeo_0133"
/db_xref="GeneID:4057333"
CDS complement(121896..122510)
/locus_tag="Dgeo_0133"
/note="KEGG: dra:DR2582 hypothetical protein, ev=9e-71,
74% identity;
TIGRFAM: conserved hypothetical protein: (9.5e-30);
PFAM: metal-dependent phosphohydrolase, HD subdomain:
(1.6e-20);
SMART: Metal-dependent phosphohydrolase, HD region:
(4.4e-14)"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_603605.1"
/db_xref="GI:94984241"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR005249"
/db_xref="InterPro:IPR006674"
/db_xref="GeneID:4057333"
/translation="MIAEPPNLRHPLAELAGWEERVRLMVRPRRFEHVLRVAELACQI
ARANGLDEARAYAAGLLHDIARDLPDAELLRLAPPECAIDAAHPLALHGRAARTLLER
WGYSDSVVLEAVEDHTTGPRGGNPVAACVYVADVSEPGRGVNEDIRELALRDLNAALN
RAIVSKVTYLQGRGIQVHPRTLLAYHALPCVTPAAAAPDSPLPP"
misc_feature complement(121947..122456)
/locus_tag="Dgeo_0133"
/note="Predicted HD superfamily hydrolase involved in NAD
metabolism [Coenzyme metabolism]; Region: COG1713"
/db_xref="CDD:31899"
misc_feature complement(122064..122423)
/locus_tag="Dgeo_0133"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature complement(order(122106..122108,122322..122327,
122412..122414))
/locus_tag="Dgeo_0133"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature complement(122322..122324)
/locus_tag="Dgeo_0133"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene complement(122611..123594)
/locus_tag="Dgeo_0134"
/db_xref="GeneID:4057334"
CDS complement(122611..123594)
/locus_tag="Dgeo_0134"
/note="PFAM: YbbR-like: (1.9e-08);
KEGG: dra:DR0008 hypothetical protein, ev=1e-103, 59%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603606.1"
/db_xref="GI:94984242"
/db_xref="InterPro:IPR012505"
/db_xref="GeneID:4057334"
/translation="MNRAGLYRWADPRYVWRRLLHNLPVKLLALVVAVVLWFVATADR
RANVEQGYDVPVTVSDTTSAPGAETRAVSDLTPSTIRVTLSGRPERLRELSGDDIEAV
VDVTGVPEGSFTRPVKVQPPTGTTLRRQTPERVQGFVDTQLTRTLPVTLGVATPPENS
LPRYTVTPGEAALSGPGRRVATVQRLVTSPVALGPGEDRETPLIALNAQGQPVQGVIL
RPATVTVRRLDTGELPVKAVPVVLNRPPTGLQVTAANLQPSNVRLVAAPELLARLREV
PGTVTYRPGTYTAPVTLQVPAGAQALEQVNVRLTVERTPQSAGTGSANSGR"
misc_feature complement(123190..123435)
/locus_tag="Dgeo_0134"
/note="YbbR-like protein; Region: YbbR; pfam07949"
/db_xref="CDD:203816"
gene complement(123591..124427)
/locus_tag="Dgeo_0135"
/db_xref="GeneID:4057335"
CDS complement(123591..124427)
/locus_tag="Dgeo_0135"
/note="PFAM: protein of unknown function DUF147:
(9.8e-47);
KEGG: dra:DR0007 hypothetical protein, ev=1e-107, 81%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603607.1"
/db_xref="GI:94984243"
/db_xref="InterPro:IPR003390"
/db_xref="GeneID:4057335"
/translation="MSLFSGSLGPRDVLDVLLVAFLIYQGYLLVVGTRAVNVLRGILV
FAGVWVMAQVLGLTTLSYLLGRASTVGLFALVVLFQPELRAALERVGRPRGRDLGASG
AALQDLARAMERLAERKTGALIAIERRTPLGEYAATGVALDAKVSAPFLEALFARNAP
LHDGGVIIQGSRVVAAGCLFPLQAADGTYRRYGTRHRAALGLSEVSDAVVLVVSEERG
SMRIALAGRLGPDLNGTELREQLRTLVYDRADLTGELPTPPLDASVEAAVGHPIQERG
NA"
misc_feature complement(123717..124397)
/locus_tag="Dgeo_0135"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1624"
/db_xref="CDD:31811"
misc_feature complement(123744..124106)
/locus_tag="Dgeo_0135"
/note="DisA bacterial checkpoint controller
nucleotide-binding; Region: DisA_N; pfam02457"
/db_xref="CDD:190315"
gene 124577..125290
/locus_tag="Dgeo_0136"
/db_xref="GeneID:4057336"
CDS 124577..125290
/locus_tag="Dgeo_0136"
/note="catalyzes the opening and hydrolysis of the
beta-lactam ring of beta-lactam antibiotics such as
penicillins and cephalosporins"
/codon_start=1
/transl_table=11
/product="metal-dependent hydrolase"
/protein_id="YP_603608.1"
/db_xref="GI:94984244"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:4057336"
/translation="MSSSSVATLGAMQIRFLGQSAFLLTSGVHQLLIDPFIAGNPKSP
VTLEEALGWKVDAVLISHAHGDHWGNALDFGRAGVPVIGTAEIGGYAQKNGAQNAIGM
NIGGTYRAPWGSVTLTPAWHSSSFPDGTYGGMPTGLIIEMDGVRVYHAGDTNLFSDMR
LIGDRGLDVALLPIGDHYTMGPEEAARTLELLRPRVAIPMHYGTFPVLTGDPQVFARE
GRARGVDVRVLAPGETAEV"
misc_feature 124610..125287
/locus_tag="Dgeo_0136"
/note="metal-dependent hydrolase; Provisional; Region:
PRK00685"
/db_xref="CDD:179087"
misc_feature 124640..125278
/locus_tag="Dgeo_0136"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
gene complement(125304..126044)
/locus_tag="Dgeo_0137"
/db_xref="GeneID:4057337"
CDS complement(125304..126044)
/locus_tag="Dgeo_0137"
/note="KEGG: dra:DR0449 hypothetical protein, ev=4e-97,
74% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603609.1"
/db_xref="GI:94984245"
/db_xref="InterPro:IPR002156"
/db_xref="GeneID:4057337"
/translation="MNQAYVDASWHERPDGQGVGGWGLVLLLPGELPHRYQGQLDAPD
NNAAELRAVLEAVRHAPTGEALTVYTDNEAVLAAVGRGRGPHKLAELAHEVQDEAAAR
GIGLRVQYAPRTRRHMLAAHDLANHARRGLRAPETDGSHADVLIEQRPAIPEARVSLR
RPGERVTALVSLDPRSDVPPSAQALLAAVTLAQPGEVLLVRRASKVAQALWQQPERAL
RPEAHAQLAQARQTADALGVQVKFQGLG"
misc_feature complement(125658..126032)
/locus_tag="Dgeo_0137"
/note="RNase H is an endonuclease that cleaves the RNA
strand of an RNA/DNA hybrid in a sequence non-specific
manner; Region: RNase_H; cd06222"
/db_xref="CDD:187690"
misc_feature complement(order(125667..125669,125715..125717,
125832..125834,125898..125900,125907..125912,
126015..126026))
/locus_tag="Dgeo_0137"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187690"
misc_feature complement(order(125832..125834,126024..126026))
/locus_tag="Dgeo_0137"
/note="active site"
/db_xref="CDD:187690"
gene 126133..126732
/gene="pyrE"
/locus_tag="Dgeo_0138"
/db_xref="GeneID:4057338"
CDS 126133..126732
/gene="pyrE"
/locus_tag="Dgeo_0138"
/note="involved in fifth step of pyrimidine biosynthesis;
converts orotidine 5'-phosphate and diphosphate to orotate
and 5-phospho-alpha-D-ribose 1-diphosphate"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase"
/protein_id="YP_603610.1"
/db_xref="GI:94984246"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR002375"
/db_xref="InterPro:IPR006273"
/db_xref="GeneID:4057338"
/translation="MHPSRAAECDTRRMDVLALYQQAGAYHEGHFLLASGRHSPKFLQ
STTVLQYPHLTEKIGQALAERLREAGIQADLLVGPAMGGVILAYEVARHYGTRAIFTE
KDGKGGMKVREAFSLAPGETFVAVEDVLTTGGSVLKAVRAVEALGGKCVAVACIVDRR
EEAGPLEGYPLISLTRLTFETYAPDEVPAWLAARPLQKI"
misc_feature 126304..126654
/gene="pyrE"
/locus_tag="Dgeo_0138"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(126370..126372,126376..126378,126511..126519,
126523..126537,126607..126609)
/gene="pyrE"
/locus_tag="Dgeo_0138"
/note="active site"
/db_xref="CDD:206754"
gene complement(126791..128068)
/locus_tag="Dgeo_0139"
/db_xref="GeneID:4057339"
CDS complement(126791..128068)
/locus_tag="Dgeo_0139"
/note="TIGRFAM: 2-oxoglutarate dehydrogenase, E2
component, dihydrolipoamide succinyltransferase:
(4.5e-244);
PFAM: biotin/lipoyl attachment: (1.9e-24) catalytic domain
of components of various dehydrogenase complexes:
(2.3e-138) E3 binding: (5.3e-14);
KEGG: dra:DR0083 2-oxoglutarate dehydrogenase,
dihydrolipoamide succinyltransferase E2 component, ev=0.0,
78% identity"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate dehydrogenase E2"
/protein_id="YP_603611.1"
/db_xref="GI:94984247"
/db_xref="InterPro:IPR000089"
/db_xref="InterPro:IPR001078"
/db_xref="InterPro:IPR003016"
/db_xref="InterPro:IPR004167"
/db_xref="InterPro:IPR006255"
/db_xref="GeneID:4057339"
/translation="MAEIKVPVFSESVSEGTLLTWHKQPGDAVKRGEVLAEIETDKVV
LEVTAQQDGVLTSVTKHEGDTVLSEEVLGTIGEAGSAPAASTPAPAPDQVSGPVAGEA
SAGGTAVQADSTGVQSAASVATRRDDLSPAVRKIVAEQGLNPAQIPATGPKGNITKAD
ALQAATSSQPAPAAAPVQAPPPQAAAVQVPQGNRPEQRVPMTRIRQRIAERLKEVQNT
AAILTTFNEINMKPAMDLRKKYQDQFVAKHGVKLGFMSLFVRAATEALKQFPIINASV
EGKDIIYHGYYDIGIAVASDRGLVVPILRDTDQMSLADIEKQIAQFAQKAKTGKLTLE
DMSGGTFSITNGGTFGSMMSTPIINAPQSAILGMHNIIERPVAEQGQFVIRPMMYVAL
SYDHRIIDGREAVLFLVAIKNALEDPARMLLEI"
misc_feature complement(126794..128068)
/locus_tag="Dgeo_0139"
/note="dihydrolipoamide succinyltransferase; Validated;
Region: PRK05704"
/db_xref="CDD:180214"
misc_feature complement(127844..128062)
/locus_tag="Dgeo_0139"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature complement(order(127925..127927,127937..127954,
127973..127975))
/locus_tag="Dgeo_0139"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature complement(127943..127945)
/locus_tag="Dgeo_0139"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature complement(127583..127696)
/locus_tag="Dgeo_0139"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature complement(126800..127435)
/locus_tag="Dgeo_0139"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:201074"
gene complement(128181..131141)
/gene="sucA"
/locus_tag="Dgeo_0140"
/db_xref="GeneID:4057340"
CDS complement(128181..131141)
/gene="sucA"
/locus_tag="Dgeo_0140"
/note="SucA; E1 component of the oxoglutarate
dehydrogenase complex which catalyzes the formation of
succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
reaction of 2-oxoglutarate with dihydrolipoamide
succinyltransferase-lipoate to form dihydrolipoamide
succinyltransferase-succinyldihydrolipoate and carbon
dioxide"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate dehydrogenase E1"
/protein_id="YP_603612.1"
/db_xref="GI:94984248"
/db_xref="InterPro:IPR001017"
/db_xref="InterPro:IPR005475"
/db_xref="InterPro:IPR011603"
/db_xref="GeneID:4057340"
/translation="MLFEVPACPCDSGRNSAARSGLQSLFGTRGMLKGVMTQSQTIMS
GGNAAFIEGLYEAYLADPQSVAPEWRAYFDELRGGTSETAHSAVQQAFYQLGTQRRGL
AATASTAPASASLSGAQQAASALITAYRVYGHISARTNPLKMRGLPVVPELTPEFYGL
SDTELNEHVQEGAFSGTLRDVIAQLQQTYCGAIGFEFNYLPAPERKWFQERIEPTRGR
GTYSAEERRRFFKKLNAAEGLERYLHIKYVGQKRFSLEGSESFIPLLDRIIQQAGKYG
VKETVIGMAHRGRLNVLVNIFGKKPADLFAEFEGKKKLSDNPDVAGDVKYHMGFSSDV
RTPGGPMHLALAFNPSHLEIVSPVVHGSVRARQDRRGDTERKQVLPITVHGDAAVSGQ
GVVMETLNLSRLRGFTTGGAVRIVINNQIGFTVSDPRDTRSSRYCTDVAKIANAPVLH
VNGDDPEAVAFCGDLALEYRQTFGKDVFIDLISFRRHGHNEADDPTMTQPIMYREIKG
HPGTRALYAAELERAGVLKPGEADEFIERYRDRLDAGDAVVEEIENLEQSALAADWSK
YVHTHWTEETPTAVPQATLTELGLKLAEVPAGFQTHRGVKRVLDARRAMAKGEQPLDW
GMGEMLAYATLLVEGYSVRLDGQDSGRGTFSHRHAVLHDQNAQDPMNEEYVSLAHLSP
NQGRVEIVDSTLSEEAVLAFEYGYSTSEPKALVAWEAQFGDFANGAQAVIDQFLSAGE
SKWQRLSGLTMLLPHGYEGAGPEHSSARLERYLQLCAQKNMQVVVPSSAAQIFHLLRR
QVLRPYRKPLIVMTPKSLLRNKLAMSPLSELSEGRFQEVIGDDTVQKARRVVISSGKL
HWELFEARDADKEGYAGTALIRLEQLYPFPAEALRAELARHPGAQVVWAQEEPENQGA
WLMIREDLEQALAEGQILTHASRPRSASTAVGYASVHALEQAQVIAAALGEPVTRKAV
EAEVRKTAQTGVQS"
misc_feature complement(128250..131036)
/gene="sucA"
/locus_tag="Dgeo_0140"
/note="2-oxoglutarate dehydrogenase E1 component;
Reviewed; Region: sucA; PRK09404"
/db_xref="CDD:181824"
misc_feature complement(129633..130427)
/gene="sucA"
/locus_tag="Dgeo_0140"
/note="Thiamine pyrophosphate (TPP) family, E1 of
OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the 2-oxoglutarate
dehydrogenase multienzyme complex (OGDC). OGDC catalyzes
the oxidative decarboxylation of...; Region:
TPP_E1_OGDC_like; cd02016"
/db_xref="CDD:48179"
misc_feature complement(order(129879..129881,129885..129887,
129978..129989,130086..130088))
/gene="sucA"
/locus_tag="Dgeo_0140"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48179"
misc_feature complement(128682..129284)
/gene="sucA"
/locus_tag="Dgeo_0140"
/note="Transketolase, pyrimidine binding domain; Region:
Transket_pyr; pfam02779"
/db_xref="CDD:202390"
gene 131393..132322
/locus_tag="Dgeo_0141"
/db_xref="GeneID:4057341"
CDS 131393..132322
/locus_tag="Dgeo_0141"
/note="PFAM: transport-associated: (1.3e-17);
KEGG: dra:DR0392 hypothetical protein, ev=2e-57, 43%
identity"
/codon_start=1
/transl_table=11
/product="transport-associated"
/protein_id="YP_603613.1"
/db_xref="GI:94984249"
/db_xref="InterPro:IPR007055"
/db_xref="GeneID:4057341"
/translation="MARNHDDRDDRYDDRRSGMDRGGDLYRGRDEGRSSMGYGEDRYG
DRSGMGYGGSERGSYGGGQGSGMDQGRGGSSGRDWGWGSQGYSNSDADRWDQGRGNEG
RGGMYGGQYGGYGRSGRSDGGGMSGQGYNASGWSSGQDYGQSGQYGGSGRDQGMFGSQ
GYSSQGQGGMSGRPSYGQGMYGGQGYGQSQYGSGMGSGPSYRGKGPKGYQRSDDRIKE
EVNEALEDEHGVDASDIEVQVQNGEVTLTGTVSDRNQKRLAEDCVERVRGVKDVHNQL
RVQPPGRMSMDAMSGSGTSTATSGSTDNTQSKR"
misc_feature <131996..132232
/locus_tag="Dgeo_0141"
/note="Predicted periplasmic or secreted lipoprotein
[General function prediction only]; Region: OsmY; COG2823"
/db_xref="CDD:32651"
misc_feature 132077..132232
/locus_tag="Dgeo_0141"
/note="BON domain; Region: BON; pfam04972"
/db_xref="CDD:203137"
gene 132456..132731
/locus_tag="Dgeo_0142"
/db_xref="GeneID:4057342"
CDS 132456..132731
/locus_tag="Dgeo_0142"
/note="KEGG: dra:DR1697 hypothetical protein, ev=2e-07,
42% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603614.1"
/db_xref="GI:94984250"
/db_xref="GeneID:4057342"
/translation="MTSDDDRPTDRQAAPNAPGGLSPDAGNQMADRSEWTGDSESGMT
DTPMVTDSPRRPTDRVDRGIPKPPGETNDGTSTGTTFGTTGTDDKGM"
gene complement(132759..133982)
/locus_tag="Dgeo_0143"
/db_xref="GeneID:4057343"
CDS complement(132759..133982)
/locus_tag="Dgeo_0143"
/note="PFAM: cytochrome P450: (1.9e-07);
KEGG: dra:DRA0186 cytochrome P450, , ev=8e-92, 60%
identity"
/codon_start=1
/transl_table=11
/product="cytochrome P450"
/protein_id="YP_603615.1"
/db_xref="GI:94984251"
/db_xref="InterPro:IPR001128"
/db_xref="InterPro:IPR002397"
/db_xref="InterPro:IPR002403"
/db_xref="GeneID:4057343"
/translation="MTTSEAPQCPYHLKQSLTRRPTAGARPSAAIEVDGNGIYRIHAF
QAARDILRSNSVRQAGFMSESARGVRGLGNPPVLFEEGEKHHEMRRSTARYFTPTQVA
EYQPMIAALADDLIAELIRRGEMNLDDLSLRLAVNVAARVVGLTSSRVPGLERRVISF
VESGGDSEPSSTQPRKSRLESLRQQAKMALFYFLDVKPAIAARRQQRQDDLISHLLDR
EYNDLEILTECLTYGTAGMVTTREFISVAAWHLLRNPGLRAEYVHGTEPERHAILHEI
LRLEPVVTMLYRRAEGELTVAGQTIPAGSLLALHLQEANTDPAVAGADAEQLCPGRTL
PRGVAPQVLAFGDGHHRCPGAFLAIKESDVFLRRLLVWQDLEIVSEPEVNSNEVVKGY
ELRGFRVRLGRAARP"
misc_feature complement(132873..133880)
/locus_tag="Dgeo_0143"
/note="Cytochrome P450 [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: CypX;
COG2124"
/db_xref="CDD:32307"
gene 134376..135275
/locus_tag="Dgeo_0144"
/db_xref="GeneID:4057344"
CDS 134376..135275
/locus_tag="Dgeo_0144"
/note="catalyzes the formation of pyridoxal 5'-phosphate
from pyridoxal"
/codon_start=1
/transl_table=11
/product="pyridoxamine kinase"
/protein_id="YP_603616.1"
/db_xref="GI:94984252"
/db_xref="InterPro:IPR004625"
/db_xref="InterPro:IPR013749"
/db_xref="GeneID:4057344"
/translation="MTSSSAPVLPQNILSIQSWVSYGHVGNAAALFPLQRLGFEVWTI
NTVQFSNHTGYGEWTGSVFPPELVADLLNGIAARGVLPTCAAVLSGYMGSEGTVSAVV
EAVRRVREANPAALYCCDPVMGDVGRGVFVRPELPDLIRTQAVPEADIVTPNQFELEL
LTGRRVTRLQEALDASRMLRGTLREGGPRLVVVTSLVREDAPQGVIETLAVTGEGAWL
CRTPLLPLDPPRNGTGDAIAALFLGHYLRTQDAGTALSLSMSALFAVLDLTHRVGTRE
IQLVAAQDEYTRPSRVFEAERVA"
misc_feature 134403..135272
/locus_tag="Dgeo_0144"
/note="pyridoxamine kinase; Validated; Region: PRK05756"
/db_xref="CDD:180238"
misc_feature 134409..135188
/locus_tag="Dgeo_0144"
/note="Pyridoxal kinase plays a key role in the synthesis
of the active coenzyme pyridoxal-5'-phosphate (PLP), by
catalyzing the phosphorylation of the precursor vitamin B6
in the presence of Zn2+ and ATP. Mammals are unable to
synthesize PLP de novo and...; Region:
pyridoxal_pyridoxamine_kinase; cd01173"
/db_xref="CDD:29357"
misc_feature order(134409..134411,134430..134432,134436..134441,
134445..134447,134457..134459,134469..134471,
134478..134480,134493..134510,134517..134519,
134526..134528,134553..134558,134562..134564,
134583..134588,134607..134609)
/locus_tag="Dgeo_0144"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29357"
misc_feature order(134427..134429,134448..134453,134520..134522,
134529..134534,134547..134549,134646..134648,
134652..134654,135066..135071,135078..135080)
/locus_tag="Dgeo_0144"
/note="pyridoxal binding site [chemical binding]; other
site"
/db_xref="CDD:29357"
misc_feature order(134733..134735,134748..134750,134829..134831,
134835..134837,134844..134846,134955..134960,
134991..134993,135036..135038,135042..135047,
135063..135065,135072..135080,135084..135086,
135159..135161,135171..135173)
/locus_tag="Dgeo_0144"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29357"
gene 135327..136070
/locus_tag="Dgeo_0145"
/db_xref="GeneID:4057345"
CDS 135327..136070
/locus_tag="Dgeo_0145"
/note="PFAM: Enoyl-CoA hydratase/isomerase: (2e-31);
KEGG: dra:DR0114 enoyl-CoA hydratase, , ev=1e-88, 67%
identity"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase"
/protein_id="YP_603617.1"
/db_xref="GI:94984253"
/db_xref="InterPro:IPR001753"
/db_xref="GeneID:4057345"
/translation="MTYESLSLARSGQVATLTLTHPKGAFGPATWREVPRALSELGEA
RALIVRGARAFSVGLDLRATAPLIAPALGDPAKFAAVVDEMHAAIEGLAALPIPVIAA
IDGWCIGAGLELAAACDLRLCSAAARFSLPEVKLGITADLGGLQRLPGLIGRGRTAQL
ALTGDPIDAAIAERWGLVTEVHPDAQTMYARADALAAQLAALPPKAVEGTKRILADER
PHAESLAAAVAWNARHMTAEGLTVPSNKA"
misc_feature 135327..136052
/locus_tag="Dgeo_0145"
/note="enoyl-CoA hydratase; Provisional; Region: PRK06142"
/db_xref="CDD:180422"
misc_feature 135342..135884
/locus_tag="Dgeo_0145"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature order(135399..135401,135483..135485,135495..135509,
135642..135644,135648..135656,135720..135725,
135732..135734)
/locus_tag="Dgeo_0145"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature order(135501..135503,135654..135656)
/locus_tag="Dgeo_0145"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature order(135594..135596,135618..135620,135681..135692,
135726..135737,135753..135755,135759..135767,
135771..135776,135789..135794,135798..135803,
135807..135812,135819..135821,135852..135854,
135861..135863)
/locus_tag="Dgeo_0145"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene 136123..136956
/locus_tag="Dgeo_0146"
/db_xref="GeneID:4057346"
CDS 136123..136956
/locus_tag="Dgeo_0146"
/note="PFAM: short-chain dehydrogenase/reductase SDR:
(4.4e-10);
KEGG: dra:DR0113 short chain dehydrogenase, ev=1e-137, 88%
identity"
/codon_start=1
/transl_table=11
/product="short chain dehydrogenase"
/protein_id="YP_603618.1"
/db_xref="GI:94984254"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4057346"
/translation="MTQPADPSTTFRPDLLRGKHALITGGGSGINLGIARSFAAHGCA
VTILGRNLEKAQNAARGIEEAGGRALGVSADVRDFAALQAAAQVGVEAFGSFDIVICG
AAGNFPAPVDGISPNGFKTVVEIDLLGTYNTIKAAAPHLRVPGGNILSISAYGVPVPM
QAHVVAAKAGVDALTQTLAVEWGLRGVRVNAIIPGPIDGTEGMARLAPDERTREQFAR
TVPLGRFGVPQDIANAALFLVSDAASYITGVILPVDGGQNMLGGAPQYQMYLAMQRAE
S"
misc_feature 136141..136935
/locus_tag="Dgeo_0146"
/note="short chain dehydrogenase; Provisional; Region:
PRK07576"
/db_xref="CDD:181043"
misc_feature 136168..136899
/locus_tag="Dgeo_0146"
/note="Trans-2-enoyl-CoA reductase (TER) and
2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR;
Region: TER_DECR_SDR_a; cd05369"
/db_xref="CDD:187627"
misc_feature order(136195..136197,136204..136212,136267..136275,
136342..136353,136426..136434,136495..136497,
136573..136581,136624..136626,136702..136713,
136717..136719)
/locus_tag="Dgeo_0146"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187627"
misc_feature order(136270..136272,136351..136353,136432..136443,
136465..136467,136471..136476,136483..136485,
136579..136581,136585..136587,136612..136614,
136708..136710)
/locus_tag="Dgeo_0146"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187627"
misc_feature order(136357..136359,136450..136458,136462..136470,
136477..136482,136489..136491,136501..136506,
136513..136518,136525..136527,136537..136539,
136555..136557,136585..136587,136591..136602,
136606..136608,136615..136620,136627..136632,
136639..136644,136648..136671,136675..136677,
136708..136710,136780..136788,136792..136800,
136810..136812,136819..136824,136831..136833,
136846..136848,136852..136869,136873..136899)
/locus_tag="Dgeo_0146"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187627"
misc_feature order(136438..136440,136585..136587,136612..136614,
136624..136626)
/locus_tag="Dgeo_0146"
/note="active site"
/db_xref="CDD:187627"
misc_feature order(136450..136458,136462..136464,136477..136482,
136489..136491,136504..136506,136513..136518,
136591..136602,136606..136608,136615..136620,
136627..136632,136639..136644,136651..136653,
136660..136665)
/locus_tag="Dgeo_0146"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187627"
gene 136990..138411
/locus_tag="Dgeo_0147"
/db_xref="GeneID:4057347"
CDS 136990..138411
/locus_tag="Dgeo_0147"
/note="PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase
C: (8.7e-11);
KEGG: dra:DR0176 D-alanyl-D-alanine carboxypeptidase, ,
ev=1e-151, 62% identity"
/codon_start=1
/transl_table=11
/product="peptidase S13, D-Ala-D-Ala carboxypeptidase C"
/protein_id="YP_603619.1"
/db_xref="GI:94984255"
/db_xref="InterPro:IPR000667"
/db_xref="GeneID:4057347"
/translation="MVLCRILTPVRRLLPLCLAGLILWSGSRAQAPEAGERVTLRRDP
GLSAGVQRALTRLPEGVRVGLLVRDLTTGELLEAREADLPLIPASNMKLVTAASVLLD
RGGVGGWWSTELTLPAAEVGRASVSHLTLRGDADPTLTAVDGPNSLQALARQVHARGV
REVGAVWVDESRLDAATWRGLALGVPMTAVRLAEWHDDPPASAAEARARVGAALIREL
RRAGVRVRSDAVIPAPPFRPYTPPPRRDERGHLLPPDPFIPPEHRPEEGVASVRSGSP
FGVLAATLRPSDNLRAEELLATLAVRPSGNGTLPGALARERGVLRRLDVDLTGIRLVD
GSGLSRENRLTVRALVQLLKVMYDLPYPTGTPQAELPSRTYRDRRNAYAEALPQAGTG
ENVPAHDGRGGTLALRLMGSGLDVRAKTGTLPGVSSLAGYVTGRSGHPLAFALLMNGP
EDSPILTLRAIQDEVVRAVAAAH"
misc_feature 137152..138402
/locus_tag="Dgeo_0147"
/note="D-alanyl-D-alanine carboxypeptidase
(penicillin-binding protein 4) [Cell envelope biogenesis,
outer membrane]; Region: DacB; COG2027"
/db_xref="CDD:32210"
misc_feature 137164..>137502
/locus_tag="Dgeo_0147"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
misc_feature <137791..138396
/locus_tag="Dgeo_0147"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
gene complement(138469..139710)
/gene="xseA"
/locus_tag="Dgeo_0148"
/db_xref="GeneID:4057348"
CDS complement(138469..139710)
/gene="xseA"
/locus_tag="Dgeo_0148"
/note="bidirectionally degrades single-stranded DNA into
large acid-insoluble oligonucleotides"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease VII large subunit"
/protein_id="YP_603620.1"
/db_xref="GI:94984256"
/db_xref="InterPro:IPR003753"
/db_xref="GeneID:4057348"
/translation="MTGRGRKRTEVTRTPEHFLDLADVLVYVGQVIARGVPGAVWVRA
EVASLTDRRHLYLDLVQLEDGVEVAKCRATVWARERFALEGKFRRATGGGSLTAGLKV
LLFCTAEFHPQYGFSLNVLDVAPEFTLGDAALKLDALRETLTREGVYGLNRTLPAPTD
FVRVAVISPAEAAGLGDFRRETDALEAAGIVRFLYLEATFQGREASASLSGAVAAARA
AHEAETLGGPLDALVVIRGGGAVTDLAWLNDLAVARALATFPVPVITGLGHARDDTLL
DEMACIRTDTPSKAAALIVRTVMAAAAQAQEDIRTIRAHARNTLVNAEAGARWLLDRL
LGSARRQTDAAQAQTDALMRQTLGLTPERTLARGYVLVRDAQGQPVTRAAQVDGGQIL
TLEFADGQAEVRAERTDPQRV"
misc_feature complement(139330..139596)
/gene="xseA"
/locus_tag="Dgeo_0148"
/note="ExoVII_LU_OBF: A subfamily of OB folds
corresponding to the N-terminal OB-fold domain of
Escherichia coli exodeoxyribonuclease VII (ExoVII) large
subunit. E. coli ExoVII is composed of two non-identical
subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF;
cd04489"
/db_xref="CDD:72961"
misc_feature complement(order(139339..139341,139396..139398,
139402..139404,139408..139410,139588..139590))
/gene="xseA"
/locus_tag="Dgeo_0148"
/note="generic binding surface II; other site"
/db_xref="CDD:72961"
misc_feature complement(order(139354..139362,139384..139392,
139411..139413,139483..139485,139489..139497,
139528..139530,139534..139545,139567..139575))
/gene="xseA"
/locus_tag="Dgeo_0148"
/note="generic binding surface I; other site"
/db_xref="CDD:72961"
misc_feature complement(138499..139260)
/gene="xseA"
/locus_tag="Dgeo_0148"
/note="Exonuclease VII, large subunit; Region:
Exonuc_VII_L; pfam02601"
/db_xref="CDD:202303"
gene complement(139707..140087)
/locus_tag="Dgeo_0149"
/db_xref="GeneID:4057349"
CDS complement(139707..140087)
/locus_tag="Dgeo_0149"
/note="TIGRFAM: crcB protein: (1.3e-20);
PFAM: Camphor resistance CrcB protein: (1.9e-21);
KEGG: dra:DR0185 integral membrane protein possibly
involved in chromosome condensation, ev=4e-48, 80%
identity"
/codon_start=1
/transl_table=11
/product="crcB protein"
/protein_id="YP_603621.1"
/db_xref="GI:94984257"
/db_xref="InterPro:IPR003691"
/db_xref="GeneID:4057349"
/translation="MKAGLWLWLMLGGAVGAVCRQGVVLALAPLVARLGFPVAVLGIN
VLGSFLLGLTLALAGRGVWPPEVRVAFGTGVLGAFTTFSTFSTELDELLGRGAVGLAA
LYAGLSVGLGLLAAVAGRLLGTRL"
misc_feature complement(<139824..>139988)
/locus_tag="Dgeo_0149"
/note="CrcB-like protein; Region: CRCB; cl09114"
/db_xref="CDD:208979"
gene 140133..141170
/locus_tag="Dgeo_0150"
/db_xref="GeneID:4057350"
CDS 140133..141170
/locus_tag="Dgeo_0150"
/note="PFAM: Mg2+ transporter protein, CorA-like:
(2.8e-30);
KEGG: dra:DR2399 hypothetical protein, ev=1e-89, 72%
identity"
/codon_start=1
/transl_table=11
/product="Mg2+ transporter protein, CorA-like protein"
/protein_id="YP_603622.1"
/db_xref="GI:94984258"
/db_xref="InterPro:IPR002523"
/db_xref="GeneID:4057350"
/translation="MGRGRRSRRPTTVSPPALFSHSTGPPSTPRLTLHEPRTIFPMIR
AQTLTGTPLDWAGQTQGVWVDVQAVTPEDLERLRVAFSLNRLALEDALEQGHWSRAEA
YPEHAFITIRSFAHPEEADEFTERLSIFLYSDAVLTISRAGTLALGAVWKLVGRESVN
TAPEIVYELLDHTADTFFTLADTLETRVDALEERVFTDGRTNPVGDVFALKHLLAQAR
RLSSDAREAVALLARHAEGSAADLVRYRDVQDSFTRVASRLDGLRDFLTSLLDLHLNL
QSQRMNEVMRTLTAVSVVFLPLTFLAGVWGMNFEHMPELHTRYGYAFAWLSFLVIGVW
LAYSFKRRGWW"
misc_feature 140307..141164
/locus_tag="Dgeo_0150"
/note="magnesium/nickel/cobalt transporter CorA;
Provisional; Region: PRK11085; cl00459"
/db_xref="CDD:200659"
misc_feature 140316..141155
/locus_tag="Dgeo_0150"
/note="CorA-like Mg2+ transporter protein; Region: CorA;
pfam01544"
/db_xref="CDD:201848"
gene complement(141148..141978)
/locus_tag="Dgeo_0151"
/db_xref="GeneID:4057351"
CDS complement(141148..141978)
/locus_tag="Dgeo_0151"
/note="PFAM: TatD-related deoxyribonuclease: (1.3e-101)
amidohydrolase 2: (0.0024);
KEGG: dra:DR0146 deoxyribonuclease, ev=1e-115, 79%
identity"
/codon_start=1
/transl_table=11
/product="TatD-related deoxyribonuclease"
/protein_id="YP_603623.1"
/db_xref="GI:94984259"
/db_xref="InterPro:IPR000595"
/db_xref="InterPro:IPR001130"
/db_xref="InterPro:IPR006992"
/db_xref="GeneID:4057351"
/translation="MIDTHCHLDYLDDPASARGELGLSGMVCIGASLEHARNAVALAE
QFPDVWATVGLHPTDTAEDGPQLRAELEALAQHPRVVGIGESGLDDYWDDTRRAAQVS
AFEWQLELARRTGKPLVIHVRDKAGQDSAQQGVMEILKSWPDVPVILHCFSGHPGLLA
YGLERGAYFGFAGNTTYKNAQAIQQAARQVPQDRLLIETDAPFLAPVPKRGQPNRPGY
VRYTLDFIAALRGVEAAVLEQVTDANARRVYRLPDREQQHTSSASEREGHAATTNPGA
"
misc_feature complement(141229..141978)
/locus_tag="Dgeo_0151"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:30053"
misc_feature complement(order(141379..141381,141529..141531,
141616..141618,141958..141960,141964..141966))
/locus_tag="Dgeo_0151"
/note="active site"
/db_xref="CDD:30053"
gene 142122..142757
/locus_tag="Dgeo_0152"
/db_xref="GeneID:4057352"
CDS 142122..142757
/locus_tag="Dgeo_0152"
/note="KEGG: dra:DR2318 hypothetical protein, ev=1e-53,
52% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603624.1"
/db_xref="GI:94984260"
/db_xref="GeneID:4057352"
/translation="MLKAGVYALLALGIFALVFALLPPAQPDAARTGASLQGVALALY
PARDPDAVWRFRAAHVTSDPLQGETHLTGLSDGGRWVRERAVNGQPTGQVVLDATLSA
PDLTIDAQDNMLTRQAQITLVQQCADIALSGTPEQPVRVEQGAGFSAPVARVDSPSLV
GRITRLKMTFDFSIEDSGEDSTFNLPIDPTETCVNGKRVPVSRLTQTGEQP"
gene 142754..143647
/locus_tag="Dgeo_0153"
/db_xref="GeneID:4057353"
CDS 142754..143647
/locus_tag="Dgeo_0153"
/note="PFAM: OstA-like protein: (0.00028);
KEGG: dra:DR2319 hypothetical protein, ev=1e-105, 68%
identity"
/codon_start=1
/transl_table=11
/product="OstA-like protein"
/protein_id="YP_603625.1"
/db_xref="GI:94984261"
/db_xref="InterPro:IPR005653"
/db_xref="GeneID:4057353"
/translation="MKTTKRAALLAALAATTVLAQTAAENRIINIQGAPRGDLRNGPL
TFSGSPVKATVSSLQIQAAQATLAAPAGTPITTAKGKRTATFSGNVQVTRGRLTARGG
QLAYSEATGQGILSANPTATFVPEDKSSGDTVTISAAQMSLDVDNNVSTSTGNVRLTN
GSQSGQAERLVFDEDKELAQLTGTPSLTRAAKSNQKELTITGQEVRALTDAKTLYVRG
GVRLVQGTLTTTGDAVYYDDKKNVAYVVGHAVSVDSKTKVTVRAPASGALEQRTDLAR
VRALNTPYKIPTEQFRLPGEK"
misc_feature 142994..143284
/locus_tag="Dgeo_0153"
/note="OstA-like protein; Region: OstA; cl00844"
/db_xref="CDD:193952"
misc_feature 143153..143494
/locus_tag="Dgeo_0153"
/note="OstA-like protein; Region: OstA; cl00844"
/db_xref="CDD:193952"
gene 143657..144646
/locus_tag="Dgeo_0154"
/db_xref="GeneID:4057354"
CDS 143657..144646
/locus_tag="Dgeo_0154"
/note="PFAM: OstA-like protein: (0.0041);
KEGG: dra:DR2320 hypothetical protein, ev=8e-91, 55%
identity"
/codon_start=1
/transl_table=11
/product="OstA-like protein"
/protein_id="YP_603626.1"
/db_xref="GI:94984262"
/db_xref="InterPro:IPR005653"
/db_xref="GeneID:4057354"
/translation="MHRLLALTLTLTLGAGLPVWVLAQEAVPASQPATPAEAAPTPAG
SEAENASLELVRKGDDGQERRIRIVRTGTSDATGIFTLCGPQEDEPQDAPTLAVFSET
GPGGVQITIDKNVIRVPLALVTQRQAENGEGGDGHVEASAGTARFLDEVPPGKTDRLS
RCAVEATPQPAPDTVLVTQGKTQLKGQKLLYDESDGIARIDGPISFTRPSQDGLLTGS
SASIEVNVDEEQTVLVGNVVLKSQGGRISRAARVEYDDQANTARLIGTSEQPAESVQG
GDVLRAQELLYDLDRNEVVARAAPGGTITGEFQDGESSSGAPAAPPTLLPTAP"
misc_feature 144179..144421
/locus_tag="Dgeo_0154"
/note="OstA-like protein; Region: OstA; cl00844"
/db_xref="CDD:193952"
gene complement(144734..145267)
/locus_tag="Dgeo_0155"
/db_xref="GeneID:4057355"
CDS complement(144734..145267)
/locus_tag="Dgeo_0155"
/note="PFAM: UspA: (1.8e-19);
KEGG: dra:DR2363 hypothetical protein, ev=4e-50, 64%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603627.1"
/db_xref="GI:94984263"
/db_xref="InterPro:IPR006015"
/db_xref="InterPro:IPR006016"
/db_xref="GeneID:4057355"
/translation="MPDPLIFTAGTGTEANPEPTEPAPDAGSRPFQRIAVGIDFSPAS
LHALDVTRTRFPGARLRLLHVTDARVATTPDLGGGVIPTGPSSALLQTLETADADRLA
QLAQGSEETELLVGDPVTGILDAAERWGAELIVVGTHAQGAIEHFLLGSSAEKLISRS
SVPVLTVRLPRAQAARR"
misc_feature complement(144767..145171)
/locus_tag="Dgeo_0155"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature complement(order(144809..144820,144848..144853,
144857..144862,145073..145075,145151..145159))
/locus_tag="Dgeo_0155"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene 145359..146816
/locus_tag="Dgeo_0156"
/db_xref="GeneID:4057356"
CDS 145359..146816
/locus_tag="Dgeo_0156"
/note="PFAM: beta-lactamase-like: (3.5e-19)
RNA-metabolising metallo-beta-lactamase: (2.3e-13);
KEGG: dra:DRA0069 metallo-beta-lactamase family protein,
ev=0.0, 72% identity"
/codon_start=1
/transl_table=11
/product="beta-lactamase-like protein"
/protein_id="YP_603628.1"
/db_xref="GI:94984264"
/db_xref="InterPro:IPR001279"
/db_xref="InterPro:IPR011108"
/db_xref="GeneID:4057356"
/translation="MQVESLGAALTVTGSAHLLSTHSGPVLIDCGLFQGGEELEARNR
EPFPFAAPDLLAVLVTHAHLDHIGRLPLLVRRGYRGPIYCTPPTAALAEAVLLDSARL
QVEGFRQDLRKARRIGREADVLEPLYDEEDVHRTLALLRPTLHYGETTRVGPLRVTSQ
RAGHILGSAYLVIEGEGQRLLMSGDLGNRESGLQLVFTPPPPVDAVMLETTYANRTHR
SRAATLAEFRDILHQSIRAGGKILIPTFAIERAQMILYILRDMMAAGEVPRIPVFLDS
PLATRATADYFEFGEELIPPVRTAIQNGEDPFHPSTLHVVPTSAESQRINRYDGPAII
IAGNGMMNGGRIQHHLKHNLWKPSTSLVIVSYQSPGSLGGRILAGQSPVRILGEEVIV
RAQVHTIGGFSAHADQDDLLTFLADTGNPRVWLIHGEVPVMEEFLPVLAQRGLTANIM
PDHQAVDLLTTTFPAGRPPGLPEGGEDARASAGGE"
misc_feature 145359..146693
/locus_tag="Dgeo_0156"
/note="Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis]; Region: YSH1; COG1236"
/db_xref="CDD:31429"
misc_feature 145401..145988
/locus_tag="Dgeo_0156"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
misc_feature 146109..146486
/locus_tag="Dgeo_0156"
/note="Beta-Casp domain; Region: Beta-Casp; smart01027"
/db_xref="CDD:198095"
misc_feature 146520..146645
/locus_tag="Dgeo_0156"
/note="RNA-metabolising metallo-beta-lactamase; Region:
RMMBL; pfam07521"
/db_xref="CDD:203663"
gene complement(146843..147409)
/locus_tag="Dgeo_0157"
/db_xref="GeneID:4057357"
CDS complement(146843..147409)
/locus_tag="Dgeo_0157"
/note="PFAM: Exonuclease, RNase T and DNA polymerase III:
(2.5e-10);
SMART: Exonuclease: (3.5e-17);
KEGG: sth:STH2271 DNA polymerase III-like protein,
ev=1e-08, 31% identity"
/codon_start=1
/transl_table=11
/product="exonuclease"
/protein_id="YP_603629.1"
/db_xref="GI:94984265"
/db_xref="InterPro:IPR006055"
/db_xref="InterPro:IPR013520"
/db_xref="GeneID:4057357"
/translation="MSALPHLAALTQPIIFVDTETGGRDPARHPLLTVGLVTLTPQGE
VTRPLHLRVRHEHYEVEEEAMAVNGIDLATHHATAQAPEEVAEAVRAYARAVGRVMLG
GHNLAYDLGFLRWLLPDLKSIFRRGRVDTKLTAQFLLHAGILPRKVGTPLDQLAKYFG
LAYQAHDALEDARVTAWVYAELLRLTAR"
misc_feature complement(146870..147367)
/locus_tag="Dgeo_0157"
/note="DEDDh 3'-5' exonuclease domain family; Region:
DEDDh; cd06127"
/db_xref="CDD:176648"
misc_feature complement(order(146897..146899,146912..146914,
147083..147091,147095..147100,147341..147343,
147347..147358))
/locus_tag="Dgeo_0157"
/note="active site"
/db_xref="CDD:176648"
misc_feature complement(order(146897..146899,146912..146914,
147086..147091,147095..147100,147341..147343,
147347..147358))
/locus_tag="Dgeo_0157"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176648"
misc_feature complement(order(146897..146899,146912..146914,
147083..147085,147350..147352,147356..147358))
/locus_tag="Dgeo_0157"
/note="catalytic site [active]"
/db_xref="CDD:176648"
gene 147479..147976
/locus_tag="Dgeo_0158"
/db_xref="GeneID:4057358"
CDS 147479..147976
/locus_tag="Dgeo_0158"
/note="KEGG: dra:DR2624 hypothetical protein, ev=1e-51,
60% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603630.1"
/db_xref="GI:94984266"
/db_xref="GeneID:4057358"
/translation="MKRRLLPALLPLALAACSQKGIEGLKTFDYSGGDERSGSLVYAE
TPPVGGPHNALWQTCGVYDRPLYNEYAVHSLAHGAVWITYRPDLGPEGVAALRQLLNG
YPATLLSPYPGLPAPVVVSAWNAQLAVDAPDDRRLKAFLDRYGQGETAPERGAPCSGG
YGGTR"
misc_feature 147587..147949
/locus_tag="Dgeo_0158"
/note="Protein of unknown function (DUF3105); Region:
DUF3105; pfam11303"
/db_xref="CDD:151744"
gene complement(147985..148863)
/locus_tag="Dgeo_0159"
/db_xref="GeneID:4057359"
CDS complement(147985..148863)
/locus_tag="Dgeo_0159"
/note="PFAM: Rhodanese-like: (4e-09);
KEGG: dra:DR2531 thiosulfate sulfurtransferase, ev=1e-125,
76% identity"
/codon_start=1
/transl_table=11
/product="3-mercaptopyruvate sulfurtransferase"
/protein_id="YP_603631.1"
/db_xref="GI:94984267"
/db_xref="InterPro:IPR001763"
/db_xref="GeneID:4057359"
/translation="MTATESPLKSAEWLLAHLNDPQVRVLDCRYALTDPLLGRIAYLE
GHIPGAIYADLETDLSGPVRPDGAGGRHPLPDPATLAAWLGRVGIGNDSVVVAYDDPR
GGQGFYATRAWWLLRWLGHQQVYVLDGGWPAFLAAGGQPSTAEPEFAPTTFRPDVQMD
MVATAEDVAGRDAHTLLIDARAPNRYRGEVEPLDRKAGHIPGAVNREWAGALDESGHW
REAQAQAARLKAGDAPTITYCGSGVSATPNLLARELAGVPLGPQNRLYAGSWSDWISD
DARPVATGEEPGSRKP"
misc_feature complement(148006..148863)
/locus_tag="Dgeo_0159"
/note="Rhodanese-related sulfurtransferase [Inorganic ion
transport and metabolism]; Region: SseA; COG2897"
/db_xref="CDD:32722"
misc_feature complement(148450..148842)
/locus_tag="Dgeo_0159"
/note="Thiosulfate sulfurtransferase (TST), N-terminal,
inactive domain. TST contains 2 copies of the Rhodanese
Homology Domain; this is the 1st repeat, which does not
contain the catalytically active Cys residue. The role of
the 1st repeat is uncertain, but it...; Region:
TST_Repeat_1; cd01448"
/db_xref="CDD:29079"
misc_feature complement(148567..148569)
/locus_tag="Dgeo_0159"
/note="active site residue [active]"
/db_xref="CDD:29079"
misc_feature complement(148039..148377)
/locus_tag="Dgeo_0159"
/note="Thiosulfate sulfurtransferase (TST), C-terminal,
catalytic domain. TST contains 2 copies of the Rhodanese
Homology Domain; this is the second repeat. Only the
second repeat contains the catalytically active Cys
residue; Region: TST_Repeat_2; cd01449"
/db_xref="CDD:29080"
misc_feature complement(148147..148149)
/locus_tag="Dgeo_0159"
/note="active site residue [active]"
/db_xref="CDD:29080"
gene 149149..150003
/locus_tag="Dgeo_0160"
/db_xref="GeneID:4057360"
CDS 149149..150003
/locus_tag="Dgeo_0160"
/note="PFAM: aldo/keto reductase: (1.5e-110);
KEGG: ecc:c0414 2,5-diketo-D-gluconic acid reductase A,
ev=2e-95, 60% identity"
/codon_start=1
/transl_table=11
/product="aldo/keto reductase"
/protein_id="YP_603632.1"
/db_xref="GI:94984268"
/db_xref="InterPro:IPR001395"
/db_xref="GeneID:4057360"
/translation="MQTVKLNNGVEMPILGFGVFQISDASVCEEAVSTALEVGYRLID
TAAAYGNEEAVGRAIRNSGLPREELFVTTKLWIQDADEKKAAAAFQRSLDRLGLDYLD
LYLIHQPFGDYYGAWRAMEDLQREGRVRAIGVSNFYLDRLVDLIDHNELVPAVNQVET
HVFFQRREEQERMQALGVQIEAWGPFAEGKNNFFKNPILAQIGEAHGKSVAQVALRWL
IQRGVVAIPKSVRPERIQENFAVFDFELSLAEMDTLAKLDTGTSLFLDHRNPDVVHWL
NTAPLGIS"
misc_feature 149155..149919
/locus_tag="Dgeo_0160"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature 149191..149922
/locus_tag="Dgeo_0160"
/note="Aldo/keto reductase family; Region: Aldo_ket_red;
pfam00248"
/db_xref="CDD:201112"
misc_feature order(149200..149208,149278..149280,149293..149295,
149368..149370,149467..149472,149551..149556,
149617..149619,149695..149712,149779..149781,
149824..149835,149848..149850,149857..149862)
/locus_tag="Dgeo_0160"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(149278..149280,149293..149295,149368..149370,
149467..149469)
/locus_tag="Dgeo_0160"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(149975..150250)
/locus_tag="Dgeo_0161"
/db_xref="GeneID:4057361"
CDS complement(149975..150250)
/locus_tag="Dgeo_0161"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603633.1"
/db_xref="GI:94984269"
/db_xref="GeneID:4057361"
/translation="MFPHLFQSLLLGLAAVLIEEGLDFAEARPLAVHGQDGAGGQQVE
HMGEQRESKRPERSHSGLPCGFWSGHCWDPPNLSSGLEFRRCQEAPY"
gene complement(150443..152131)
/locus_tag="Dgeo_0162"
/db_xref="GeneID:4058408"
CDS complement(150443..152131)
/locus_tag="Dgeo_0162"
/note="KEGG: dra:DR2462 hypothetical protein, ev=0.0, 80%
identity;
TIGRFAM: uncharacterized domain HDIG: (1.2e-25);
PFAM: KH, type 1: (1.6e-07) metal-dependent
phosphohydrolase, HD subdomain: (1.4e-26);
SMART: Metal-dependent phosphohydrolase, HD region:
(3.2e-16) KH: (1.8e-08)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603634.1"
/db_xref="GI:94984270"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR004088"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR006675"
/db_xref="GeneID:4058408"
/translation="MNMLYFVLALLVGLAGGFFVGQARGRQQRATLDDQLQREARAEA
ERIRTQADAEARQLREQAEQRLQDAARRLQEADDRERQVTLQLEAQREQLQAVRAQIE
AERARAAQDAARERETLSADRQETRREREELKREIERLNRRAEQLDARGDKLDALEER
LEGQLHALAQQEAELAERSRQVDLKLYEVAGLTPEAAREQILRQLDAELEEEKAIRVK
AMTERATAEARRTARNVIAQAIQRSASETSSQMSVSVVPIPNDAMKGRLIGREGRNIR
AFEALTGVDLIIDDTPEAVILSSFNPVRREVARHVLEALVADGRIHPTRIEEMVHKAQ
DEMKSFIHAQGEEAAIESGVVGLKPGLVQLLGRMYFRSSYGQNVLKHSVQVAHLTGIM
ADELGLDAALARRAGLMHDIGKSIDREIEGTHVEIGINLAKRFGEPPEVIDAIAHHHD
PENGETLYSVLVAAADAISAARPGARREELEAYVRRLEQLEQIAIAFPGVQQAYAIQA
GREVRVLVQPEKVTDAQATLLAREIAGRIEQDMEYPGQVQVTVVRESRAVEVAR"
misc_feature complement(151394..>151699)
/locus_tag="Dgeo_0162"
/note="Domain of unknown function (DUF3552); Region:
DUF3552; pfam12072"
/db_xref="CDD:152507"
misc_feature complement(151196..151369)
/locus_tag="Dgeo_0162"
/note="KH domain; Region: KH_1; pfam00013"
/db_xref="CDD:200928"
misc_feature complement(150491..151111)
/locus_tag="Dgeo_0162"
/note="Predicted HD superfamily hydrolase [General
function prediction only]; Region: COG1418"
/db_xref="CDD:31608"
misc_feature complement(150785..151012)
/locus_tag="Dgeo_0162"
/note="uncharacterized domain HDIG; Region: HDIG;
TIGR00277"
/db_xref="CDD:161799"
gene complement(152455..152895)
/gene="rplI"
/locus_tag="Dgeo_0163"
/db_xref="GeneID:4058409"
CDS complement(152455..152895)
/gene="rplI"
/locus_tag="Dgeo_0163"
/note="in Escherichia coli this protein is wrapped around
the base of the L1 stalk"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_603635.1"
/db_xref="GI:94984271"
/db_xref="InterPro:IPR000244"
/db_xref="GeneID:4058409"
/translation="MQVILLEPGRLGKTGDVVNVKPGYARNWLIPQGIAAPATASNMK
TLEAQVRARKKQQEREKAQAEDLASRLNGVAVELSVRAGEGKIYGAVTHADVADALDK
LGFDVDRRRIEMPKTVKEIGEYDIAYRAHPEVTIPMKLVVHAQK"
misc_feature complement(152461..152895)
/gene="rplI"
/locus_tag="Dgeo_0163"
/note="50S ribosomal protein L9; Reviewed; Region: rplI;
PRK00137"
/db_xref="CDD:178893"
misc_feature complement(152755..152895)
/gene="rplI"
/locus_tag="Dgeo_0163"
/note="Ribosomal protein L9, N-terminal domain; Region:
Ribosomal_L9_N; pfam01281"
/db_xref="CDD:201708"
misc_feature complement(152461..152715)
/gene="rplI"
/locus_tag="Dgeo_0163"
/note="Ribosomal protein L9, C-terminal domain; Region:
Ribosomal_L9_C; pfam03948"
/db_xref="CDD:146531"
gene complement(152907..153182)
/gene="rpsR"
/locus_tag="Dgeo_0164"
/db_xref="GeneID:4058410"
CDS complement(152907..153182)
/gene="rpsR"
/locus_tag="Dgeo_0164"
/note="binds as a heterodimer with protein S6 to the
central domain of the 16S rRNA; helps stabilize the
platform of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_603636.1"
/db_xref="GI:94984272"
/db_xref="InterPro:IPR001648"
/db_xref="GeneID:4058410"
/translation="MTQQSNTERKPRAKGPKRPRKPKVDPFSIGELEITDYKDVKMLR
RFISDTGKILPRRRTGLSAKHQRRISQTIKIARQLALLPYTEKLVRK"
misc_feature complement(152922..153113)
/gene="rpsR"
/locus_tag="Dgeo_0164"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene complement(153202..154107)
/locus_tag="Dgeo_0165"
/db_xref="GeneID:4058411"
CDS complement(153202..154107)
/locus_tag="Dgeo_0165"
/note="TIGRFAM: single-strand binding protein: (3.8e-37);
PFAM: single-strand binding protein/Primosomal replication
protein n: (2.6e-28);
KEGG: dra:DR0100 single-stranded DNA-binding protein,
ev=3e-71, 72% identity"
/codon_start=1
/transl_table=11
/product="single-strand binding protein"
/protein_id="YP_603637.1"
/db_xref="GI:94984273"
/db_xref="InterPro:IPR000424"
/db_xref="InterPro:IPR010913"
/db_xref="InterPro:IPR011344"
/db_xref="GeneID:4058411"
/translation="MARGMNHVFLIGALARDPELRYTPSGVAVFEATVAGEDHLIGND
GRERKLPWYHRVSLLGKPAEWQAERNLRAGDAVMVEGGLEYSQWEAPEGGKRSMVRVK
AGRIEQLGSQPELVQDAGGGVRMAGGLNEVILIGNVTRDPELRYTPAGDAVLGLGLAV
NESWQDRQGQRQEKTHWVDVTLWRDLAEAMKDLRKGDPVLVQGRLVNEAWTDRDGNKR
NSTKVEATRVEALSRGAATGSAAATPAAPRTQTAGSTARPQPSSVGVSRTQPSRAANT
GTRSGGLDIDQGLDDFPPEEEDLPF"
misc_feature complement(<153790..154098)
/locus_tag="Dgeo_0165"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:30974"
misc_feature complement(153781..154086)
/locus_tag="Dgeo_0165"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:72968"
misc_feature complement(order(153811..153813,153820..153822,
153853..153855,153880..153882,153946..153948,
153952..153954,153991..153996,154000..154002,
154075..154086))
/locus_tag="Dgeo_0165"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:72968"
misc_feature complement(order(153802..153804,153808..153810,
153847..153852,153856..153858,153862..153864,
153886..153891,153931..153933,153937..153939,
153943..153945,153949..153951,153955..153960,
153988..153993,154015..154017,154045..154047,
154063..154071))
/locus_tag="Dgeo_0165"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:72968"
misc_feature complement(order(153787..153789,153868..153870,
153874..153876,153880..153882))
/locus_tag="Dgeo_0165"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:72968"
misc_feature complement(153205..153729)
/locus_tag="Dgeo_0165"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:30974"
misc_feature complement(153421..153714)
/locus_tag="Dgeo_0165"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:72968"
misc_feature complement(order(153445..153447,153454..153456,
153487..153489,153514..153516,153574..153576,
153580..153582,153622..153630,153703..153714))
/locus_tag="Dgeo_0165"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:72968"
misc_feature complement(order(153436..153438,153442..153444,
153481..153486,153490..153492,153496..153498,
153520..153525,153559..153561,153565..153567,
153571..153573,153577..153579,153583..153588,
153619..153624,153643..153645,153673..153675,
153691..153699))
/locus_tag="Dgeo_0165"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:72968"
misc_feature complement(order(153421..153423,153502..153504,
153508..153510,153514..153516))
/locus_tag="Dgeo_0165"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:72968"
gene complement(154236..154544)
/gene="rpsF"
/locus_tag="Dgeo_0166"
/db_xref="GeneID:4058412"
CDS complement(154236..154544)
/gene="rpsF"
/locus_tag="Dgeo_0166"
/note="binds cooperatively with S18 to the S15-16S
complex, allowing platform assembly to continue with S11
and S21"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_603638.1"
/db_xref="GI:94984274"
/db_xref="InterPro:IPR000529"
/db_xref="GeneID:4058412"
/translation="MNQYDLNLILNPNLSAEQLQIEKDYIETTLRNNGAEVTKLDDVG
NRRMAYPIAKDREGYYLMYTIRAGGNPEKDIASTLRLRDNVRRVLVVKDRPEWKTKKA
"
misc_feature complement(<154335..154544)
/gene="rpsF"
/locus_tag="Dgeo_0166"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 154686..154880
/locus_tag="Dgeo_0167"
/db_xref="GeneID:4058413"
CDS 154686..154880
/locus_tag="Dgeo_0167"
/note="KEGG: dra:DR2302 hypothetical protein, ev=2e-09,
60% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603639.1"
/db_xref="GI:94984275"
/db_xref="GeneID:4058413"
/translation="MSETQQNGEEQNGLEGVLDILKEAVEGGVPGQGTALLDGTRADG
SGNHGLLATLHGLSAEQASL"
gene complement(154899..155987)
/locus_tag="Dgeo_0168"
/db_xref="GeneID:4058414"
CDS complement(154899..155987)
/locus_tag="Dgeo_0168"
/note="PFAM: protein kinase: (6.1e-27);
SMART: Tyrosine protein kinase: (4.3e-14) Serine/threonine
protein kinase: (2.2e-42);
KEGG: dra:DR1213 serine/threonine protein kinase, ,
ev=1e-100, 58% identity"
/codon_start=1
/transl_table=11
/product="serine/threonine protein kinase"
/protein_id="YP_603640.1"
/db_xref="GI:94984276"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR001245"
/db_xref="InterPro:IPR002290"
/db_xref="GeneID:4058414"
/translation="MGEGRQSYVTIGLLSSNQPSASGSFSTLRTPRLPLPPMTPERTI
PGYKLLYLLGRGHTALVHLAQDAQGRQVALKIPLQDTLRVQEAAERFGNEVRLTLQFR
HPHVVQAYAGTPFGTQAFLALRHYPEGTLYDVLQRRGGQKLPLDEALRILADVASGLT
YLHALGAVHQDVKTQNVYMDAGRAALGDLGSTYFTAQGGQSSGSPFYMAPEIYRGESS
SPASDVYSLGILTYELLSGQRPYQGDTYEELMGAHLTRFAPPLVHLNPQVPRSLGRLA
EQALAKRPQDRPSADTLRRAFLTGLGEPDEDEVLLEERSIPSQTPRPVGRHALAARVP
PPAEAAPNQPRLPEEPGPSRWNPFRRRK"
misc_feature complement(155109..155849)
/locus_tag="Dgeo_0168"
/note="Serine/Threonine protein kinases, catalytic domain;
Region: S_TKc; smart00220"
/db_xref="CDD:197582"
misc_feature complement(155109..155831)
/locus_tag="Dgeo_0168"
/note="Catalytic domain of Protein Kinases; Region: PKc;
cd00180"
/db_xref="CDD:173623"
misc_feature complement(order(155370..155381,155415..155417,
155424..155426,155454..155456,155460..155465,
155469..155471,155475..155477,155592..155594,
155598..155600,155610..155621,155667..155669,
155763..155765,155769..155771,155805..155807,
155817..155831))
/locus_tag="Dgeo_0168"
/note="active site"
/db_xref="CDD:173623"
misc_feature complement(order(155424..155426,155454..155456,
155460..155465,155469..155471,155475..155477,
155598..155600,155610..155621,155667..155669,
155763..155765,155769..155771,155805..155807,
155817..155831))
/locus_tag="Dgeo_0168"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:173623"
misc_feature complement(order(155370..155381,155415..155417,
155463..155465,155469..155471,155475..155477,
155592..155594,155598..155600,155817..155819))
/locus_tag="Dgeo_0168"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173623"
misc_feature complement(order(155370..155381,155409..155429))
/locus_tag="Dgeo_0168"
/note="activation loop (A-loop); other site"
/db_xref="CDD:173623"
gene complement(156077..157219)
/locus_tag="Dgeo_0169"
/db_xref="GeneID:4058415"
CDS complement(156077..157219)
/locus_tag="Dgeo_0169"
/note="TIGRFAM: peptide chain release factor 2:
(9.7e-140);
PFAM: Class I peptide chain release factor: (2.8e-60)
PCRF: (4.9e-32);
KEGG: dra:DR0173 peptide chain release factor 2,
ev=1e-180, 80% identity"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_603641.1"
/db_xref="GI:94984277"
/db_xref="InterPro:IPR000352"
/db_xref="InterPro:IPR004374"
/db_xref="InterPro:IPR005139"
/db_xref="GeneID:4058415"
/translation="MPAPRSTGETRKGDTSCRNCWKNWRRSGSTFDIPGKTRRLNELD
RELSDPELWNNPSRARQVTQEAGSLRRIVDGYRTLQSDANSLNEMLEMASDEERALLA
EEQDTIQARVDELYRETLFTMKHADAPAIVRVKGGAGGTEAQDWAGMLARMYMRWAER
RGYKVDVLDEQPGEQAGYQSIEFIIRGEKAFGMMAPEHGVHRLVRVSPFDANNRRQTS
FASVDVVPEVPEEQIDIVIPDSDVRVDVYRSQGAGGQGVNTTDSAVRVTHLPTGIIVA
IQVTRSQIKNREMAFQILKQRLYDLEMRKREEEEAKARGEQKKIEWGSQIRSYVLDKQ
YVKDHRTGLMKHNPDDVLDGDLDDLMWAGLEWMAGKRAAEDGADEE"
misc_feature complement(156107..157159)
/locus_tag="Dgeo_0169"
/note="peptide chain release factor 2; Validated; Region:
prfB; PRK00578"
/db_xref="CDD:179072"
misc_feature complement(156629..156958)
/locus_tag="Dgeo_0169"
/note="PCRF domain; Region: PCRF; pfam03462"
/db_xref="CDD:202648"
misc_feature complement(156200..156532)
/locus_tag="Dgeo_0169"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 157596..159088
/locus_tag="Dgeo_R0002"
/db_xref="GeneID:4057202"
rRNA 157596..159088
/locus_tag="Dgeo_R0002"
/product="16S ribosomal RNA"
/db_xref="GeneID:4057202"
gene complement(159185..159688)
/locus_tag="Dgeo_0170"
/db_xref="GeneID:4058416"
CDS complement(159185..159688)
/locus_tag="Dgeo_0170"
/note="PFAM: transcription factor CarD: (3.2e-08);
KEGG: ttj:TTHA0168 hypothetical protein, ev=2e-44, 53%
identity"
/codon_start=1
/transl_table=11
/product="CarD family transcriptional regulator"
/protein_id="YP_603642.1"
/db_xref="GI:94984278"
/db_xref="InterPro:IPR003711"
/db_xref="GeneID:4058416"
/translation="MKRAFFRTGDRVVLPPYGIGVVSGTCQRPVAGSIQVYYQVDFPN
TASRAFVPVDAPQSTGLRAALTAADMPGLLQRLQSSQTLNLPRQWAARHRRVTEILVG
GDPYEIATLTCELRRWNMERGLPDLDRQAFRRAIRLLEQEVRGLEDPCAQDVQRLLNH
VWNETPN"
misc_feature complement(159206..159685)
/locus_tag="Dgeo_0170"
/note="CarD-like/TRCF domain; Region: CarD_CdnL_TRCF;
cl00588"
/db_xref="CDD:207120"
gene complement(159941..160690)
/locus_tag="Dgeo_0171"
/db_xref="GeneID:4058417"
CDS complement(159941..160690)
/locus_tag="Dgeo_0171"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component: (4.4e-24);
KEGG: hch:HCH_00159 ABC-type proline/glycine betaine
transport system, permease component, ev=1e-47, 46%
identity"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_603643.1"
/db_xref="GI:94984279"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4058417"
/translation="MTFRALSHPARHLPWGVVVWPTLLILCLLPGVLPRLVGPLSPGQ
LLVFDPPLWQLTLTHLALVLLATAVVLLFGIPLAVVVTRPGREALQHLTETLVGLGQT
VPTFAILALAVPALGFGWTPTLLGLILYGLVPVVSNGVAGLLAVDRNLLDAARGMGMS
NGQRLWRVELPLALPVLLAGIRTSTVYNVGTATVGAALGAGGLGSPIINGLSQQNTGL
ILIGAVLAALLALSLDALLGLVFRYGDPVPR"
misc_feature complement(<160190..160474)
/locus_tag="Dgeo_0171"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(160196..160198,160247..160249,
160256..160261,160271..160273,160277..160282,
160289..160291,160295..160297,160301..160306,
160352..160354,160358..160363,160370..160399,
160403..160414,160445..160447,160460..160465,
160472..160474))
/locus_tag="Dgeo_0171"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(160352..160396)
/locus_tag="Dgeo_0171"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(160190..160192,160208..160246))
/locus_tag="Dgeo_0171"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(160687..161619)
/locus_tag="Dgeo_0172"
/db_xref="GeneID:4058418"
CDS complement(160687..161619)
/locus_tag="Dgeo_0172"
/note="PFAM: ABC transporter related: (5.6e-68);
SMART: ATPase: (3.9e-21);
KEGG: sth:STH2630 glycine betaine/carnitine/choline ABC
transporter ATP-binding protein, ev=5e-81, 52% identity"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_603644.1"
/db_xref="GI:94984280"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4058418"
/translation="MIELQHLEKRYGDAFAVRDLNLVFPAGELTALLGPSGCGKTTTL
RMINRLIEPTGGRVLLGGRDTRDFRPEELRRGIGYVIQQIGLFPHLTVAQNVATVPEL
LGWDRRRTARRVDELLELVGLDPALYRTKKPAELSGGQAQRVGVARALAADPPVLLMD
EPFGALDPLARDHLQEAFREIQRRLNKTVVLVTHDIDEALRLGDRVALMRAGSLAQFG
SPDDLIYRPAGLFVSQFLGEDAALRQLAGRSAAEFVRPGDPSGLPVIEGTLDARSALG
VMLREGTDALAVKRDGLFLGVLRWEELRTQEARA"
misc_feature complement(160711..161619)
/locus_tag="Dgeo_0172"
/note="ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism];
Region: OpuBA; COG1125"
/db_xref="CDD:31322"
misc_feature complement(160894..161616)
/locus_tag="Dgeo_0172"
/note="OpuCA is a the ATP binding component of a bacterial
solute transporter that serves a protective role to cells
growing in a hyperosmolar environment. ABC (ATP-binding
cassette) transporter nucleotide-binding domain; ABC
transporters are a large family of...; Region:
ABC_OpuCA_Osmoprotection; cd03295"
/db_xref="CDD:73054"
misc_feature complement(161497..161520)
/locus_tag="Dgeo_0172"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73054"
misc_feature complement(order(161038..161040,161137..161142,
161374..161376,161494..161502,161506..161511))
/locus_tag="Dgeo_0172"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73054"
misc_feature complement(161374..161385)
/locus_tag="Dgeo_0172"
/note="Q-loop/lid; other site"
/db_xref="CDD:73054"
misc_feature complement(161185..161214)
/locus_tag="Dgeo_0172"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73054"
misc_feature complement(161137..161154)
/locus_tag="Dgeo_0172"
/note="Walker B; other site"
/db_xref="CDD:73054"
misc_feature complement(161119..161130)
/locus_tag="Dgeo_0172"
/note="D-loop; other site"
/db_xref="CDD:73054"
misc_feature complement(161032..161052)
/locus_tag="Dgeo_0172"
/note="H-loop/switch region; other site"
/db_xref="CDD:73054"
gene complement(161681..162874)
/locus_tag="Dgeo_0173"
/db_xref="GeneID:4058419"
CDS complement(161681..162874)
/locus_tag="Dgeo_0173"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component: (4.5e-20);
KEGG: ssn:SSO_2187 transport system permease, ev=2e-58,
41% identity"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_603645.1"
/db_xref="GI:94984281"
/db_xref="InterPro:IPR000515"
/db_xref="InterPro:IPR001991"
/db_xref="GeneID:4058419"
/translation="MRVAGQQEASWAVAPATVSGTNTVLMLAMLPMLLGALLPWVLLR
PNRLAPGTYLHLPPALVGAALLLAVLPLLTARFTPRLTWLAAALAVVAGFWWLGSQTR
AALLNQLPFARASAASGVWLFLLGAGVAAYGAGLLSRCRAERWLAWAWLPVVTVLFLS
GHLNAWSVLVEGRNEGPRWVQEWVQHLRLVGEGLGLALLIGAPLAVWATGRERVASAV
LGAANAVQTLPSLALLGLLIAPLAALANAFPGLRTLGISGIGVAPALTALTLYALLPI
LRNGVVALRGVPTGVVDAARGMGMTPAQLFWRVRLPLALPVWLSGIRQAAVLLVGVAA
VAALIGAGGLGTYIFKGLQSAAADLILLGAVPAALLALGLDAALRGLERLLGQRLGSV
QGRVA"
misc_feature complement(<161906..>162028)
/locus_tag="Dgeo_0173"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(161936..161938,161948..161953,
161969..162007))
/locus_tag="Dgeo_0173"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(162924..163826)
/locus_tag="Dgeo_0174"
/db_xref="GeneID:4058420"
CDS complement(162924..163826)
/locus_tag="Dgeo_0174"
/note="PFAM: Substrate-binding region of ABC-type glycine
betaine transport system: (3.9e-71);
KEGG: cvi:CV4392 probable ABC transporter ev=7e-75, 51%
identity"
/codon_start=1
/transl_table=11
/product="substrate-binding region of ABC-type glycine
betaine transport system"
/protein_id="YP_603646.1"
/db_xref="GI:94984282"
/db_xref="InterPro:IPR007210"
/db_xref="GeneID:4058420"
/translation="MSKVLCLSLAVLMGSAAAKPIVVGSKLDPEAQILGQMIVLTLRN
AGLEVSDKTNLGDTGVNRKAILAGEIDVYPEYTGNAVYLFPQAKISAKDAGNPGKIYG
YARQLDAKNGITWLKPANVNNTWVIAVPQALAQREKLSSVADLARYLQAGGRFKIAGS
PEFFNRPDTMPAFEAAYGFKLRPDQKLVLAGATPPQTQQAAANGTNGVNAAMAYGTDG
TLAALKLVALKDPKGAQAVYQPAPIIRSEVLQAHPEIGTLLNKTFATLTQAGLQRLNA
QVALEGRTAQEVAQSYLKSKGLIK"
misc_feature complement(162939..163817)
/locus_tag="Dgeo_0174"
/note="Periplasmic glycine betaine/choline-binding
(lipo)protein of an ABC-type transport system
(osmoprotectant binding protein) [Cell envelope
biogenesis, outer membrane]; Region: OpuBC; COG1732"
/db_xref="CDD:31918"
misc_feature complement(162942..163772)
/locus_tag="Dgeo_0174"
/note="Substrate binding domain of ABC-type glycine
betaine transport system; Region: OpuAC; pfam04069"
/db_xref="CDD:202876"
gene complement(163941..164291)
/locus_tag="Dgeo_0175"
/db_xref="GeneID:4058421"
CDS complement(163941..164291)
/locus_tag="Dgeo_0175"
/note="PFAM: histone-like DNA-binding protein: (8.7e-27);
KEGG: dra:DRA0065 DNA-binding protein HB, ev=6e-32, 64%
identity"
/codon_start=1
/transl_table=11
/product="histone-like protein DNA-binding protein"
/protein_id="YP_603647.1"
/db_xref="GI:94984283"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:4058421"
/translation="MARTSQSRAKDNATASRREEAREGSGKIAKTQIVDQIAERTSLS
RKQASEAVATILDTIAQALREGKTVGLPGLGTLSVTETAARTGVRPGTSERIQIPAGK
KIRFKVATTLKGNL"
misc_feature complement(163953..164204)
/locus_tag="Dgeo_0175"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature complement(order(163962..163964,163971..163973,
163977..163979,163989..163991,164019..164030,
164037..164039,164043..164048,164052..164054,
164064..164066,164073..164078,164082..164084,
164088..164090,164133..164135,164199..164204))
/locus_tag="Dgeo_0175"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
misc_feature complement(order(163968..163970,163974..163976,
163986..163991,164055..164057,164070..164075,
164082..164096,164106..164111,164118..164123,
164130..164132,164172..164174,164184..164186,
164193..164195,164202..164204))
/locus_tag="Dgeo_0175"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
gene complement(164378..165118)
/locus_tag="Dgeo_0176"
/db_xref="GeneID:4058422"
CDS complement(164378..165118)
/locus_tag="Dgeo_0176"
/note="PFAM: UBA/THIF-type NAD/FAD binding fold: (4.7e-61)
MoeZ/MoeB: (1.9e-19);
KEGG: dra:DR2269 molybdopterin biosynthesis MoeB,
ev=1e-88, 70% identity"
/codon_start=1
/transl_table=11
/product="UBA/THIF-type NAD/FAD binding fold"
/protein_id="YP_603648.1"
/db_xref="GI:94984284"
/db_xref="InterPro:IPR000205"
/db_xref="InterPro:IPR000594"
/db_xref="InterPro:IPR007901"
/db_xref="GeneID:4058422"
/translation="MTPSLSRTELRRYSRQLLVPEWQGAGAQERVRGAAVLVVGAGGL
GGPVILQLAGAGVGRLVIADGDTVDLSNLHRQTQFSLADVGRPKAEVAAARAQALNPF
VRVEVAPRLDAGNADTLLAGVDLIVDATDNFEARYAIADACGRAQREWVWGAASGTSG
LVSVFGPDLGLRDVFPDPGDAASCDEAGVLGPLPNVVGGVMALEALKLLGGVGEPLRG
RLWTFDALSGRVRVLHLRGTGGQVGGRA"
misc_feature complement(164411..165118)
/locus_tag="Dgeo_0176"
/note="molybdopterin biosynthesis protein MoeB;
Provisional; Region: PRK05690"
/db_xref="CDD:180204"
misc_feature complement(164414..165085)
/locus_tag="Dgeo_0176"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:30111"
misc_feature complement(order(164714..164716,164732..164734,
164855..164857,164894..164896,164921..164923,
164927..164929,164987..164989,164993..164995,
164999..165001))
/locus_tag="Dgeo_0176"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:30111"
misc_feature complement(order(164417..164422,164426..164428,
164447..164449,164459..164461,164636..164638,
164642..164644,164654..164659,164711..164713,
164723..164731,164987..164989))
/locus_tag="Dgeo_0176"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:30111"
gene 165138..165728
/locus_tag="Dgeo_0177"
/db_xref="GeneID:4058423"
CDS 165138..165728
/locus_tag="Dgeo_0177"
/note="PFAM: protein of unknown function DUF205:
(2.4e-10);
KEGG: dra:DR2270 hypothetical protein, ev=2e-60, 64%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603649.1"
/db_xref="GI:94984285"
/db_xref="InterPro:IPR003811"
/db_xref="GeneID:4058423"
/translation="MPDSRMRGMLALVALVSYLLGSLVAGVLYSRALGEDIRERDLPG
GSGTYRQHGLLAALAVTACDVLKGVAAVILARWLTPDFTWVATLAVVLGHCYPLYFRF
SGGGGIAPLLGALLVAAPVTLAGTLAAGLALIPLYRAALQPRVGLNAVPFATAVAVPL
GLLLATRSGGLRDLLAGGGVLAVRALQLLGEQKRSV"
misc_feature 165162..165716
/locus_tag="Dgeo_0177"
/note="membrane protein; Provisional; Region: PRK14401"
/db_xref="CDD:184658"
gene 165725..167833
/locus_tag="Dgeo_0178"
/db_xref="GeneID:4058424"
CDS 165725..167833
/locus_tag="Dgeo_0178"
/note="PFAM: Tetratricopeptide TPR_2: (5.6e-05);
KEGG: dra:DR2271 hypothetical protein, ev=0.0, 58%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603650.1"
/db_xref="GI:94984286"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:4058424"
/translation="MRRAWLGLTLAALALLGGAGADAVLEGRTLRYEDGPQLRWSRTY
PAALGDLTPPVTLGDTVYLGVGPVVYALGTNGTLRARYDLPGTVTSLDTTGGMVRVST
QGDGYTERFSLGDPRSGGHVQERVVFPPDPEVTGWLARAARLVPPENLARAVREDPLN
PFLALRQAVLAARRGDRYATLDAVRRTLSGDLPFPAWVQLAAALDASGFPAAADLALD
RARRDAAAREYDPEVRVSRAALLAYGNPSGYVGTLLDQGRLGRAEVWMRYLRELHPRF
EGGPALYARYANLLDGQGRSGEAEEWRQFTRGLRAGTLYNLGPEAPRQVRDVVRLVTL
ALLIALGAALLTLTARAWRVQGEDTRALGGRWAAWVRHPLARARRVAVLYAPWGERLG
LAALAAGLLISVVGWQWANITAARLNAPALNIGTYGGGWYAARLDDLDLQPTPDTALL
AGLSAQLDGDDSTARARYSLAPGDACALNNLGTIAQTHGDVPQARELYRQALAARPDL
AAAAYNLGLNPGTPGTLFQRTYRPTQPRLCYPDDRSLARAVQGDLSVTLLRDLRAPLT
ALTPGPGQSTRLGWAFLGALALLALLILALLIPRPASAVRQGRPAAYRLAALLLPGTA
LLEGAWGGVLLLAWAGALAGLAPLAGLNRFAASLDLARPGTRGVLLTLLAATYLLNTA
VWITTEVRAARRQRRANREI"
gene 167919..169658
/locus_tag="Dgeo_0179"
/db_xref="GeneID:4058425"
CDS 167919..169658
/locus_tag="Dgeo_0179"
/note="KEGG: dra:DR2489 hypothetical protein, ev=0.0, 77%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603651.1"
/db_xref="GI:94984287"
/db_xref="GeneID:4058425"
/translation="MSVFALVSSRLRAPYALLTALALGLGAVPAAALGAVQLTVTTDQ
TAVSVNGQASQYLSPPRLLNGRTMLPLRETAVLLGQTLVDAGGQLQLGRLTVDPARNA
AFLAGVLQPDGSVVTVGTTLYVSARLLADALNANLTVDGRTLTLTALREGGNPLAPQA
RFSTDKTTYAPGERVIFTEYAFDPDGADIVSRKWTGRQDVYFQPGTYTVTLQVTNSRG
LQSEPFSRTIRVEGVPVDTPLTYALKYAEPGDRFPDPLVSSYPAVAAQPVFGDRYPLL
FSDSPEAPTQSGILYQDSLAGRARLLAYHLNALGRPARLYILARNLEGRPVEVRTERL
GETAPTRIEGLLGQVTLLDYFASTGEHVLTLAPGQSAAVYASPTLNAGSGVNVMQDLI
TSGRVELTFVMLEDSLPPTAQVVQQIPYLPPDDRHQRGTFPNAVRPLRVNLTTLPARL
VIGDGQVDPALTGTDVLTGRPQRLLGNYGVLYDLEVNGAAGTAVALSPRGGLYRGAMN
IEDGPITQTIKLPRTGNALTPDQPVLLWRAQSDRLNIDFVPASGSNLPISLVFYRAPF
QSAVGGVLKTYQP"
misc_feature <168027..>168134
/locus_tag="Dgeo_0179"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
gene complement(169746..170645)
/locus_tag="Dgeo_0180"
/db_xref="GeneID:4058426"
CDS complement(169746..170645)
/locus_tag="Dgeo_0180"
/note="An essential enzyme in the nonmevalonate pathway of
isopentenyl diphosphate and dimethylallyl diphosphate
biosynthesis"
/codon_start=1
/transl_table=11
/product="4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase"
/protein_id="YP_603652.1"
/db_xref="GI:94984288"
/db_xref="InterPro:IPR004424"
/db_xref="InterPro:IPR006204"
/db_xref="InterPro:IPR013750"
/db_xref="GeneID:4058426"
/translation="MPPECGGPPMPLDPLTLRPLAPSETATYLAPAKVNLGLSVRGLR
TDGYHELHSVMVPLVVGDELEIAAADTLTLRVEGAALPTDERNLVYRAARAYLDAAGV
SGGATITLRKRLPLASGLGGGSSDAATTLMALARLFPAPVNLPALALTLGADVPFFLL
GQAALAQGIGDVLTPLPVPQVPLVLVNPGVEVSARDAYAWLDEEEAFTPPLDVEGLLA
ALTAQHELPTFNALQGPVAARHAPIQAALAALSSAGLRSPLMSGSGATCFALAASDAQ
AHAAAQALQAQHPAWWVVATRTL"
misc_feature complement(169749..170576)
/locus_tag="Dgeo_0180"
/note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional; Region: PRK14612"
/db_xref="CDD:184768"
gene complement(170635..171318)
/locus_tag="Dgeo_0181"
/db_xref="GeneID:4058427"
CDS complement(170635..171318)
/locus_tag="Dgeo_0181"
/note="TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase: (4e-87);
PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase:
(6.1e-61);
KEGG: dra:DR2604 4-diphosphocytidyl-2C-methyl-D-erythritol
synthase, ev=2e-82, 76% identity"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase"
/protein_id="YP_603653.1"
/db_xref="GI:94984289"
/db_xref="InterPro:IPR001228"
/db_xref="GeneID:4058427"
/translation="MTSVCFLAGRTAALIPAAGSGTRLGRGPKAFVEVAGQSLLARSV
AALAPWVDEVLVALPEGFPLPPGLPAQAILGGTTRQESVWRLLHATTADVVLVHDAAR
PFLPGAVVTALLEAVSETGAATAALPVADTLVRGERGRWADLVPREGLWAVQTPQAFR
RALLLRAHAAARAEGFGATDDAGLIARLGLPVRLVPGDARLFKVTTPGDLALAQAVAA
VWDATCDAP"
misc_feature complement(170698..171288)
/locus_tag="Dgeo_0181"
/note="CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production; Region:
CDP-ME_synthetase; cd02516"
/db_xref="CDD:133009"
misc_feature complement(order(170710..170712,171016..171024,
171073..171075,171082..171093,171232..171234,
171250..171267,171271..171273))
/locus_tag="Dgeo_0181"
/note="substrate binding site; other site"
/db_xref="CDD:133009"
misc_feature complement(order(170722..170727,170737..170748,
170761..170763,170770..170775,170779..170784,
170860..170877,170926..170928,170932..170934,
170956..170958,171013..171015))
/locus_tag="Dgeo_0181"
/note="dimer interface; other site"
/db_xref="CDD:133009"
gene complement(171315..171911)
/locus_tag="Dgeo_0182"
/db_xref="GeneID:4058428"
CDS complement(171315..171911)
/locus_tag="Dgeo_0182"
/note="TIGRFAM: 3-octaprenyl-4-hydroxybenzoate
carboxy-lyase: (4e-67);
PFAM: flavoprotein: (7.8e-45);
KEGG: dra:DR2603 3-octaprenyl-4-hydroxybenzoate
carboxy-lyase, ev=2e-80, 80% identity"
/codon_start=1
/transl_table=11
/product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase"
/protein_id="YP_603654.1"
/db_xref="GI:94984290"
/db_xref="InterPro:IPR003382"
/db_xref="InterPro:IPR004507"
/db_xref="GeneID:4058428"
/translation="MQPTPPSARLRRMRLVVGVSGGSGIPYALSVLRALRALHVETHL
IVTSGAKRVMTAEGGPQLKDLTALATVTHDDRDLAASVASGSFRTDGMLVVPCSAGTL
AKVAGGFADTLLSRAAHVTLKERRRLVLVLREDPLSRPVLTNLLAAFDAGATVMTASP
GFYHAPQTVEELLHFVTARVLDQFGLDAPAFRRWKEEA"
misc_feature complement(171321..171881)
/locus_tag="Dgeo_0182"
/note="3-polyprenyl-4-hydroxybenzoate decarboxylase
[Coenzyme metabolism]; Region: UbiX; COG0163"
/db_xref="CDD:30512"
misc_feature complement(171549..171875)
/locus_tag="Dgeo_0182"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
gene complement(171911..172513)
/locus_tag="Dgeo_0183"
/db_xref="GeneID:4058429"
CDS complement(171911..172513)
/locus_tag="Dgeo_0183"
/note="PFAM: regulatory protein, LuxR: (4.3e-19) response
regulator receiver: (1.4e-33) Bacterio-opsin activator,
HTH: (0.00024) sigma-70 region 4: (0.0019) Sigma-70,
region 4 type 2: (0.00041);
KEGG: dra:DRA0010 DNA-binding response regulator,
ev=5e-77, 76% identity"
/codon_start=1
/transl_table=11
/product="LuxR family transcriptional regulator"
/protein_id="YP_603655.1"
/db_xref="GI:94984291"
/db_xref="InterPro:IPR000792"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR007050"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR013249"
/db_xref="GeneID:4058429"
/translation="MIRVLLAEDQALVLGALSALLSLEGDLEVVGTATDGEAALALAC
ELRPDVLVTDIEMPRLSGLDLAERLRTRCPEVRVVIVTTFARAGYLRRALEVGARGYL
LKDAPASDLAGAIRQVHAGGRAIDPGLAAEAWGERDPLTERERQVLRAAEGGASTAVI
AARLNLSEGTVRNYLSEAISKLGCENRIEAARKAREQGWL"
misc_feature complement(171914..172510)
/locus_tag="Dgeo_0183"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature complement(172157..172429)
/locus_tag="Dgeo_0183"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(172199..172204,172211..172213,
172268..172270,172328..172330,172352..172354))
/locus_tag="Dgeo_0183"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(172352..172354)
/locus_tag="Dgeo_0183"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(172328..172336,172340..172345))
/locus_tag="Dgeo_0183"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(172196..172204)
/locus_tag="Dgeo_0183"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(171926..172096)
/locus_tag="Dgeo_0183"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature complement(order(171953..171955,171986..172000,
172004..172009,172013..172018,172040..172048,
172085..172093))
/locus_tag="Dgeo_0183"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(order(171926..171931,171938..171940,
171947..171955,172046..172048,172052..172054,
172058..172060))
/locus_tag="Dgeo_0183"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene complement(172510..173682)
/locus_tag="Dgeo_0184"
/db_xref="GeneID:4058430"
CDS complement(172510..173682)
/locus_tag="Dgeo_0184"
/note="PFAM: ATP-binding region, ATPase-like: (1.2e-13)
histidine kinase, dimerisation and phosphoacceptor region:
(6.9e-26);
KEGG: dra:DRA0009 hypothetical protein, ev=5e-87, 56%
identity"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_603656.1"
/db_xref="GI:94984292"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR011712"
/db_xref="GeneID:4058430"
/translation="MQARKQKMNPWDFFPLLWLVFLSFPVMGFLEKDHTFSQTALFWG
LITGFLAVYWRVFMCPSSERQALISWAYTLLTYLLLFPVIGGTASAFLIYGGSMIGMQ
SSMAAALWLAFLNAAVMVLPFWTGQYTADDLGWLVTNAIFTLVAAYANHASYRQRMTS
RRLAEVQAEKEALAADAERERIARDLHDLLGHTLSVIVLKSELASKLAQRDPARAVQE
IREVERISREALSEVRAAVSGYRGSGLKAELARAKVALDAAGVRLEYGGQPGPLPPEV
EHGMSMVLREAVTNVVRHAHARECRVNITREGERYRLEIADDGVGGAAPEGTGLTSMR
ERVRALGGEFTRDGTRGTRLVASFVGTQGGSVSGPLPSPAELASSALSTLPRRRPQ"
misc_feature complement(172609..173637)
/locus_tag="Dgeo_0184"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4585"
/db_xref="CDD:34223"
misc_feature complement(172960..173130)
/locus_tag="Dgeo_0184"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:203743"
misc_feature complement(172609..172836)
/locus_tag="Dgeo_0184"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(172621..172623,172627..172632,
172645..172647,172693..172704,172720..172722,
172726..172728,172732..172734,172738..172740,
172804..172806,172813..172815,172825..172827))
/locus_tag="Dgeo_0184"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(172813..172815)
/locus_tag="Dgeo_0184"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(172696..172698,172702..172704,
172720..172722,172726..172728))
/locus_tag="Dgeo_0184"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(173740..174537)
/locus_tag="Dgeo_0185"
/db_xref="GeneID:4058431"
CDS complement(173740..174537)
/locus_tag="Dgeo_0185"
/note="PFAM: ABC-2 type transporter: (0.0002);
KEGG: dra:DRA0008 ABC-2 type transport system permease,
ev=3e-88, 63% identity"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_603657.1"
/db_xref="GI:94984293"
/db_xref="InterPro:IPR000412"
/db_xref="InterPro:IPR013525"
/db_xref="GeneID:4058431"
/translation="MTTFAPTASVPTRRVPVLPLLTQLVLAELRRMARSPMFAVGTLG
FPVLWFALFALPHVHKTMDSGANVGQYLLVSFATYALLSLAMFSFGAAVANERTGGWL
RLLRASPLPATLYLAAKLLAALVFSALSLTLLYAFAHFAGGVTFPVGQGLLIAGKLLV
GMIPLIALGLCIGFLSNPASASVLANILSVIVSFGSGLFVPLDQLPKVVQNLAPYLPS
YHLAQLGWSAVTGQGSSGSHWAWLAGYTLVCGGVAVWAYRRDEARGQ"
misc_feature complement(173773..>174330)
/locus_tag="Dgeo_0185"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_3; pfam12698"
/db_xref="CDD:205027"
gene complement(174550..175089)
/locus_tag="Dgeo_0186"
/db_xref="GeneID:4058432"
CDS complement(174550..175089)
/locus_tag="Dgeo_0186"
/note="KEGG: xac:XAC4311 hypothetical protein, ev=4e-08,
35% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603658.1"
/db_xref="GI:94984294"
/db_xref="GeneID:4058432"
/translation="MIVTPPALLPPLLGLALTGLVLLRRFQRLATPQPLDEQGRHRLV
RRSVFLLMLAGLVLLVPHSLADYGAALLGILGGTALAFWSAQHTHFDSGTDGQATRFV
PNVWIGGGVFLLFVLRLLWRLWPFLTGLVPPAGTAGFDPAAFAGKSPLTLALFLVFVT
YQVVYAWLVLRVARSSRLA"
gene complement(175086..175985)
/locus_tag="Dgeo_0187"
/db_xref="GeneID:4058433"
CDS complement(175086..175985)
/locus_tag="Dgeo_0187"
/note="PFAM: ABC transporter related: (5.4e-49);
SMART: ATPase: (4e-15);
KEGG: dra:DRA0007 ABC-2 type transport system ATP-binding
protein, ev=1e-96, 67% identity"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_603659.1"
/db_xref="GI:94984295"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4058433"
/translation="MNAEATIELCGVSKRFGRVQALHDLNLSIRAGELTALLGPNGAG
KTTAIELMLGLLQPTAGTVRVLGNRPQAARTQVGVMPQESALPAALTVHEVVTLFAHM
YPAPLAVKEALALADLLPLAGRRAGALSGGQARRLAFALAVVGNPAVLYLDEPTTGMD
AGSRQAFWRAVERMKEDHKTILLTTHYLEEAERTADRVVVMNAGQILADGTPEQLRAR
VATARVRFTSDLTLAELRQLPGVESAEVDAQGHAALTTRTPEALVTALVQSGLPFSEL
EVTRASLEDAFLSLTANKPGVAA"
misc_feature complement(175113..175979)
/locus_tag="Dgeo_0187"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:31326"
misc_feature complement(175368..175967)
/locus_tag="Dgeo_0187"
/note="This family of ATP-binding proteins belongs to a
multisubunit transporter involved in drug resistance (BcrA
and DrrA), nodulation, lipid transport, and lantibiotic
immunity. In bacteria and archaea, these transporters
usually include an ATP-binding...; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:72989"
misc_feature complement(175848..175871)
/locus_tag="Dgeo_0187"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72989"
misc_feature complement(order(175428..175430,175524..175529,
175740..175742,175845..175853,175857..175862))
/locus_tag="Dgeo_0187"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72989"
misc_feature complement(175740..175751)
/locus_tag="Dgeo_0187"
/note="Q-loop/lid; other site"
/db_xref="CDD:72989"
misc_feature complement(order(175572..175586,175680..175694))
/locus_tag="Dgeo_0187"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72989"
misc_feature complement(175524..175541)
/locus_tag="Dgeo_0187"
/note="Walker B; other site"
/db_xref="CDD:72989"
misc_feature complement(175506..175517)
/locus_tag="Dgeo_0187"
/note="D-loop; other site"
/db_xref="CDD:72989"
misc_feature complement(175422..175442)
/locus_tag="Dgeo_0187"
/note="H-loop/switch region; other site"
/db_xref="CDD:72989"
misc_feature complement(175125..175358)
/locus_tag="Dgeo_0187"
/note="Domain of unknown function (DUF4162); Region:
DUF4162; pfam13732"
/db_xref="CDD:205907"
gene 176130..176735
/locus_tag="Dgeo_0188"
/db_xref="GeneID:4058434"
CDS 176130..176735
/locus_tag="Dgeo_0188"
/note="KEGG: dra:DR0041 hypothetical protein, ev=5e-61,
59% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603660.1"
/db_xref="GI:94984296"
/db_xref="GeneID:4058434"
/translation="MPNLDRVREALRAAMTAWAVTEVRGDQARVTLAPEPEALAVHLE
RVDPEWSLTWACESVSPPVVRARLSLLGATREGLASGHTLQDAKLRALADAARFFGVA
LPAEAQWVEYDPEEGPNTADLVAEAESVAAPAVHPALRPTDPPRDPQMEKARRHIEDL
LDQIRAAGKGGEAARVIMNGYGETLEESRALYKELQAILRG"
gene 176740..177501
/locus_tag="Dgeo_0189"
/db_xref="GeneID:4058435"
CDS 176740..177501
/locus_tag="Dgeo_0189"
/note="PFAM: metallophosphoesterase: (0.00021);
KEGG: dra:DR0042 hypothetical protein, ev=3e-91, 64%
identity"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_603661.1"
/db_xref="GI:94984297"
/db_xref="InterPro:IPR004843"
/db_xref="GeneID:4058435"
/translation="MQKFIAVGDVHADWAALWAALRAASCADADLRPTLPVQLGLYQV
VLIGDLVHPKSEHDYARLTGLSRFDPRNPDHLFLAAREQVRHLEQLRAYQATAPHAVH
ILLGNHDDAVLNLSYVLGTSGGLVHVEFDPARGGLHLPDHLRTWMQGFPRELRVGSVQ
FAHVSPLPAHTHYDDLFYADPSPKRWFRDHPEYVRLAGLSFGVYGHTQLESGVLLNEA
AGFAMIDVLHRREYLELLLDRTQPQPVQSVRAVPF"
gene 177593..177668
/locus_tag="Dgeo_R0003"
/note="tRNA-Asp1"
/db_xref="GeneID:4057203"
tRNA 177593..177668
/locus_tag="Dgeo_R0003"
/product="tRNA-Asp"
/db_xref="GeneID:4057203"
gene 177691..177766
/locus_tag="Dgeo_R0004"
/note="tRNA-Phe1"
/db_xref="GeneID:4057204"
tRNA 177691..177766
/locus_tag="Dgeo_R0004"
/product="tRNA-Phe"
/db_xref="GeneID:4057204"
gene complement(177855..178580)
/locus_tag="Dgeo_0190"
/db_xref="GeneID:4058436"
CDS complement(177855..178580)
/locus_tag="Dgeo_0190"
/note="PFAM: regulatory proteins, IclR: (1.6e-06);
KEGG: dra:DR1217 transcriptional regulator, IclR family,
ev=1e-109, 83% identity"
/codon_start=1
/transl_table=11
/product="IclR family transcriptional regulator"
/protein_id="YP_603662.1"
/db_xref="GI:94984298"
/db_xref="InterPro:IPR005471"
/db_xref="GeneID:4058436"
/translation="MSLYAGQVLSLQKAASILGAFSAEQPEWGVRALAAHLSVPRATA
HAYLAGLTEAGFLRRTPAGKYRLSWHIAEMGAQLTTALPWFQDARALITRLALEVKAV
AFLCLLEGEEVVCAIRERHPDADIDLPLDIYLPATATASGKILYAHADLQPREFAVCT
QSSITTLDEWRTEVARVRRRGYAYSIEEWLPGQCTLGVPYRHAGQTVAAIGVQMSARR
YLREERSIRERVLQIVREAEGRL"
misc_feature complement(177858..178553)
/locus_tag="Dgeo_0190"
/note="Transcriptional regulator [Transcription]; Region:
IclR; COG1414"
/db_xref="CDD:31604"
misc_feature complement(178398..178553)
/locus_tag="Dgeo_0190"
/note="IclR helix-turn-helix domain; Region: HTH_IclR;
pfam09339"
/db_xref="CDD:150115"
misc_feature complement(177870..178184)
/locus_tag="Dgeo_0190"
/note="Bacterial transcriptional regulator; Region: IclR;
pfam01614"
/db_xref="CDD:201890"
gene complement(178711..178983)
/locus_tag="Dgeo_0191"
/db_xref="GeneID:4058437"
CDS complement(178711..178983)
/locus_tag="Dgeo_0191"
/note="KEGG: dra:DR2230 hypothetical protein, ev=2e-09,
54% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603663.1"
/db_xref="GI:94984299"
/db_xref="GeneID:4058437"
/translation="MKAITQSLRSSTPPACTPALRWGMTRQQDENRTDQLPQDEPPQD
ESRGEVVISGLDTGPSTTERENVTPTDEHARLTPLRPQQEPTDEDG"
gene complement(178980..180077)
/locus_tag="Dgeo_0192"
/db_xref="GeneID:4058438"
CDS complement(178980..180077)
/locus_tag="Dgeo_0192"
/note="PFAM: Nucleotidyl transferase: (7.5e-43);
KEGG: ttj:TTHA0224 glucose-1-phosphate
thymidylyltransferase, ev=3e-65, 43% identity"
/codon_start=1
/transl_table=11
/product="nucleotidyl transferase"
/protein_id="YP_603664.1"
/db_xref="GI:94984300"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:4058438"
/translation="MTSAPPLPSLTDVPLYSVHPMKGVILAAGRGSRLFPVSAGRPKH
AVPIAGVPIIAWAVRAVREAGVEEVAVVTSSNNEAALREATRDEGPLTFLRQEEPRGT
GDAVLAARAFLEGSPALLYLGDNLFADPLTPLTEALQDADAALGVKQVPDPSAYGVAA
VRDNLLTNLDEKPAAPASDLAACGVFAFHPHVLEEVARLEPSVRGEIEFPQALLRVIA
AGGRVRAVTFPGFWSDAGTPADLLSASAHFLSKLAPRVDGEVRRSSLSGPVVIEAGAT
VEDSLLVGPVLIGAGASVRGSTVGPNVSVGPQARLEGATLSDTLIDEAATVRSPTRPL
VRTVVGRRATITAPSASGLQIVVGDYSVVRV"
misc_feature complement(179325..180017)
/locus_tag="Dgeo_0192"
/note="G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase; Region:
G1P_TT_long; cd04189"
/db_xref="CDD:133032"
misc_feature complement(178989..180014)
/locus_tag="Dgeo_0192"
/note="glucose-1-phosphate thymidylylransferase, long
form; Region: rmlA_long; TIGR01208"
/db_xref="CDD:162250"
misc_feature complement(order(179448..179450,179562..179567,
179607..179609,179706..179708,179772..179777,
179784..179786,179991..179996,180000..180002))
/locus_tag="Dgeo_0192"
/note="substrate binding site; other site"
/db_xref="CDD:133032"
misc_feature complement(order(179370..179372,179376..179378,
179706..179708))
/locus_tag="Dgeo_0192"
/note="metal-binding site"
/db_xref="CDD:133032"
misc_feature complement(order(179610..179612,179625..179636,
179694..179696))
/locus_tag="Dgeo_0192"
/note="Oligomer interface; other site"
/db_xref="CDD:133032"
misc_feature complement(179043..>179309)
/locus_tag="Dgeo_0192"
/note="Glucose-1-phosphate adenylyltransferase, C-terminal
Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase. It
catalyzes the first committed and...; Region:
LbH_G1P_AT_C; cd04651"
/db_xref="CDD:100056"
misc_feature complement(order(179052..179054,179178..179180,
179277..179279,179286..179288,179292..179294))
/locus_tag="Dgeo_0192"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:100056"
misc_feature complement(order(179055..179057,179175..179180))
/locus_tag="Dgeo_0192"
/note="sulfate 1 binding site; other site"
/db_xref="CDD:100056"
gene complement(180096..181013)
/locus_tag="Dgeo_0193"
/db_xref="GeneID:4058439"
CDS complement(180096..181013)
/locus_tag="Dgeo_0193"
/note="PFAM: alpha/beta hydrolase fold: (7.9e-17);
KEGG: dra:DR0654 proline iminopeptidase-related protein,
ev=1e-129, 76% identity"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_603665.1"
/db_xref="GI:94984301"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR000379"
/db_xref="InterPro:IPR002410"
/db_xref="InterPro:IPR003089"
/db_xref="GeneID:4058439"
/translation="MSTPDESNFERLNGADLYFEVTGPQDTPGAEPPIVFLHGGPGYN
SYSFRELFGDRLQGRRVVYLDQRGSGRSGPLQDTEQGGETLDLDTLVADVEALREHLG
AEQIVPLGHGFGALVALEYARRHPTRTARVIVVNPWVHFPELALTLLREAAALRGVPL
DDPAQAVRARTPEGQYPAVGEARVEAAFALLNARDLLNTLQFRDNASRMRLEFIDAEG
QLSGGGEVQEALVNQGLWEFEYPPFLQELRRPLFVIAGVHDRTSYPEQVEWLVDLGGA
DVTVLDAGHYPWLDDEDAFAEALEEALTR"
misc_feature complement(180717..180935)
/locus_tag="Dgeo_0193"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
misc_feature complement(180150..180914)
/locus_tag="Dgeo_0193"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene 181095..181400
/locus_tag="Dgeo_0194"
/db_xref="GeneID:4058440"
CDS 181095..181400
/locus_tag="Dgeo_0194"
/note="KEGG: dra:DR0780 hypothetical protein, ev=1e-31,
77% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603666.1"
/db_xref="GI:94984302"
/db_xref="GeneID:4058440"
/translation="MTPVPPSAAPQGFAFTLEGVDELTFTRILRDILRDAVFARPLQV
QAQEPRPGVPARLTLVFRPQDRTRAVQAMQRLKTVLLRYGVQVDSVWVPGEGSADPN"
gene 181505..182173
/locus_tag="Dgeo_0195"
/db_xref="GeneID:4058441"
CDS 181505..182173
/locus_tag="Dgeo_0195"
/note="PFAM: response regulator receiver: (1.8e-38)
transcriptional regulatory protein-like: (2.9e-23);
KEGG: dra:DR0781 response regulator, OmpR/PhoB family,
ev=1e-121, 95% identity"
/codon_start=1
/transl_table=11
/product="two component transcriptional regulator"
/protein_id="YP_603667.1"
/db_xref="GI:94984303"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR001867"
/db_xref="GeneID:4058441"
/translation="MDQRILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARE
NSPDLVILDLGLPDFDGAEIARRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTK
PFHPEELVARVKVQLRHQQHGEVISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFL
ARQPGRVYSRQEIEREVWNGELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYA
LKTP"
misc_feature 181514..182170
/locus_tag="Dgeo_0195"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 181520..181855
/locus_tag="Dgeo_0195"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(181529..181534,181661..181663,181685..181687,
181742..181744,181799..181801,181808..181813)
/locus_tag="Dgeo_0195"
/note="active site"
/db_xref="CDD:29071"
misc_feature 181661..181663
/locus_tag="Dgeo_0195"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(181670..181675,181679..181687)
/locus_tag="Dgeo_0195"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 181808..181816
/locus_tag="Dgeo_0195"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 181880..182161
/locus_tag="Dgeo_0195"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(181952..181954,182009..182014,182066..182068,
182075..182077,182099..182104,182135..182137,
182150..182152)
/locus_tag="Dgeo_0195"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 182239..182727
/locus_tag="Dgeo_0196"
/db_xref="GeneID:4058442"
CDS 182239..182727
/locus_tag="Dgeo_0196"
/note="PFAM: flavin reductase-like, FMN-binding:
(6.2e-39);
KEGG: dra:DR2459 oxidoreductase, , ev=1e-67, 76% identity"
/codon_start=1
/transl_table=11
/product="flavin reductase-like FMN-binding protein"
/protein_id="YP_603668.1"
/db_xref="GI:94984304"
/db_xref="InterPro:IPR002563"
/db_xref="GeneID:4058442"
/translation="MTSTGSSGVSPHDFRQALGRFASGVTVITATDGQTRRGMTASAF
ISVSLTPPLILVSVDHRASMHALLARDEVTRFGVSILSSAQRYLSEHFAGRPGPEEAV
PWFDHEGLPLLGGSVAQLVCRKEQALPAGDHTLYLGLVEYVRYTDDDPLLHFRGQYHE
LG"
misc_feature 182290..182712
/locus_tag="Dgeo_0196"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:197971"
gene 182742..183011
/locus_tag="Dgeo_0197"
/db_xref="GeneID:4058443"
CDS 182742..183011
/locus_tag="Dgeo_0197"
/note="KEGG: dra:DR2458 hypothetical protein, ev=1e-21,
62% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603669.1"
/db_xref="GI:94984305"
/db_xref="GeneID:4058443"
/translation="MPPFLLQLLLALALTVLTGFVSYPLALTDGRSVDVLDALLLVCA
LVNLRLGWAAANQAYGGRTPAWFWVGGLLAAALITSSMIHALTPR"
gene 183060..184028
/locus_tag="Dgeo_0198"
/db_xref="GeneID:4058444"
CDS 183060..184028
/locus_tag="Dgeo_0198"
/note="PFAM: cobalamin synthesis protein, P47K: (7.5e-65)
cobalamin synthesis CobW-like: (1.8e-29);
KEGG: dra:DR2408 CobW protein, , ev=1e-140, 80% identity"
/codon_start=1
/transl_table=11
/product="cobalamin synthesis protein, P47K"
/protein_id="YP_603670.1"
/db_xref="GI:94984306"
/db_xref="InterPro:IPR003495"
/db_xref="InterPro:IPR011629"
/db_xref="GeneID:4058444"
/translation="MPGPTSGPEHWPDPRIPVLVIGGFLGAGKTTLVNHLIRSLPRRL
GVIVNEFGQTGVDGGLIERLQDDVTELTAGCLCCTGRDDLLRALVTISLREQQPDAVL
VELSGMADPTPVLTTLLDRSVRSAFRVITLVAVVDARHVLQTLHDHPEAARQLAYANV
IVLNKTDLTEPLRLDHVEEVLRGVNPLARIIRVEQAQVDAEALLARDDFDPRVLDGAG
PVEHTPGLTSFTLRAATPLDPYRWQRFMTDFILSRPAEVLRVKGFLGLHGYPQRVLFQ
AVRDLFTADAWDEADGQTELVFIGRGLDRAEYEAAFADCVMEAETA"
misc_feature 183105..184004
/locus_tag="Dgeo_0198"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:30869"
misc_feature 183108..183635
/locus_tag="Dgeo_0198"
/note="CobW/HypB/UreG, nucleotide-binding domain; Region:
cobW; pfam02492"
/db_xref="CDD:202255"
misc_feature 183738..184007
/locus_tag="Dgeo_0198"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; pfam07683"
/db_xref="CDD:203723"
gene 184050..184517
/locus_tag="Dgeo_0199"
/db_xref="GeneID:4058445"
CDS 184050..184517
/locus_tag="Dgeo_0199"
/note="TIGRFAM: Phenylacetic acid degradation-related
protein: (7.8e-20);
PFAM: thioesterase superfamily: (3.1e-13);
KEGG: dra:DR2406 ComA protein, ev=6e-58, 67% identity"
/codon_start=1
/transl_table=11
/product="phenylacetic acid degradation-related protein"
/protein_id="YP_603671.1"
/db_xref="GI:94984307"
/db_xref="InterPro:IPR003736"
/db_xref="InterPro:IPR006683"
/db_xref="GeneID:4058445"
/translation="MTLHPDLNLPTPDELDRLTPEELAARLGGLSGTLGERLGIQLLT
ATRERLTARMPVEGNRQPAGRLHGGASLALAEELASIGSWLNLDVRRQVAVGVDVSGT
HVRGVTGGFVTAEAVLAYRGRTVMVWTVEVRDERGRTTTLARCTCNVVTHAAD"
misc_feature 184161..184496
/locus_tag="Dgeo_0199"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature order(184245..184247,184335..184337,184356..184367)
/locus_tag="Dgeo_0199"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature order(184248..184250,184254..184256,184263..184265,
184338..184352,184356..184358)
/locus_tag="Dgeo_0199"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
misc_feature order(184251..184253,184275..184280,184287..184292,
184335..184337)
/locus_tag="Dgeo_0199"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
gene complement(184526..185497)
/locus_tag="Dgeo_0200"
/db_xref="GeneID:4058446"
CDS complement(184526..185497)
/locus_tag="Dgeo_0200"
/note="PFAM: polysaccharide pyruvyl transferase:
(2.3e-65);
KEGG: dra:DR0161 hypothetical protein, ev=1e-114, 66%
identity"
/codon_start=1
/transl_table=11
/product="polysaccharide pyruvyl transferase"
/protein_id="YP_603672.1"
/db_xref="GI:94984308"
/db_xref="InterPro:IPR007345"
/db_xref="GeneID:4058446"
/translation="MRVAVSGYYGFGNTGDEAIALAITRELKRQGAVPLLLSQTPAET
ARAYGCESAARMNPAALLGALARSQVLLSGGGGLLQDKTSARTLQYYLGVIQLARRLG
RRVVIFNQSIGPLSEAGGRRVAAALRGLRVIVRDRGSLDTLRALGIEGELGGDPALLL
SPTPGLDQDTQRVIVAPRGDVTDATERLKTVTAHLRAQGRRVTALALMPEQDDPAARS
LGADEVLSTRDPQAALDAIAAAGFVVGVRLHAVILAAAAGVPFAGVSYDPKVQGFCAD
AGAPACPTAFDPTDLSQQALARTAPDWAAVAEMQARAARSFTRALAE"
misc_feature complement(184637..185491)
/locus_tag="Dgeo_0200"
/note="polysaccharide pyruvyl transferase CsaB; Region:
S_layer_CsaB; TIGR03609"
/db_xref="CDD:132648"
gene complement(185494..187296)
/locus_tag="Dgeo_0201"
/db_xref="GeneID:4059109"
CDS complement(185494..187296)
/locus_tag="Dgeo_0201"
/note="KEGG: dra:DR0160 hypothetical protein, ev=0.0, 61%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603673.1"
/db_xref="GI:94984309"
/db_xref="GeneID:4059109"
/translation="MLPLLAVILLSLIPALVLAWQRVGFEQAQKTAALVMDYPALAVQ
AQRVGLTPQALLDRYKALGVNGVAVYEDVIGNLVQRGDLYERRGSDLAAENPGENVNP
QWTYLRALTPRGVEALRTLPGRYTIPTRKVTIAGQRWVGWPTDPDFLPAGPNMPLIKS
LKAQGLVLVYRPYDDEAVREPGADWPDVPFVAFTGDEVIGARTPERLAKINARLGSRL
PAIIESSDQRGLNTLVETHGGARMFALNPSWQNRIGPEAAASKYALAARERSQRLLYL
RPFPTVYETEAFLKRTSALLQHSGVKIGQPVITLFQPNDTLRALCLFGPLAALLLLGL
SFPLPRLGLTVAGLAALAALGLNGLRPFESGALIAAITFPALGLVLRRSKVTDWFLAT
GLSLIGVLFVSGLGANRDSVLGLEPFRGVGLTLLAPLLFVGLSFLPRQDIRKTARDIY
NTPLRLGDIAVMALGLGVFALVFLRRGNSTGLGVSDTEAQLRQNLQDSIIRPRFKEVA
GHPLALLGLSGVLPGYFSLLLLLGGVVGQASILNTFSHFHTPLLISAARVFIGLGVGL
VLGLIALPVVQFLLRFWNTHGARRVPVDAAEVQA"
gene complement(187525..188139)
/locus_tag="Dgeo_0202"
/db_xref="GeneID:4059110"
CDS complement(187525..188139)
/locus_tag="Dgeo_0202"
/note="functions in pyrimidine salvage; pyrimidine
ribonucleoside kinase; phosphorylates nucleosides or
dinucleosides to make UMP or CMP using ATP or GTP as the
donor"
/codon_start=1
/transl_table=11
/product="uridine kinase"
/protein_id="YP_603674.1"
/db_xref="GI:94984310"
/db_xref="InterPro:IPR000764"
/db_xref="InterPro:IPR006082"
/db_xref="InterPro:IPR006083"
/db_xref="GeneID:4059110"
/translation="MTAPFVIGVAGGSGSGKTTVTRRVIETVGAEGVAVLNQDNYYRA
QDDIPFEARLKTNYDHPAAFDWALLREHLDALLAGVPIEMPEYDFTQHTRSRTTTPVL
PAPVVVLEGFFALYDPELRERMHLKVFVDADADVRFIRRLLRDTQERGRTPESVIQQY
LEYVRPMHLSFVEPTKRYADVIIPHGGMNEPALDMLAARIRSTI"
misc_feature complement(187534..188130)
/locus_tag="Dgeo_0202"
/note="Uridine kinase [Nucleotide transport and
metabolism]; Region: Udk; COG0572"
/db_xref="CDD:30917"
misc_feature complement(187531..188124)
/locus_tag="Dgeo_0202"
/note="Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway; Region: UMPK;
cd02023"
/db_xref="CDD:30196"
misc_feature complement(order(187576..187578,187720..187722,
188086..188088))
/locus_tag="Dgeo_0202"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30196"
misc_feature complement(order(187717..187719,187957..187959,
188023..188025))
/locus_tag="Dgeo_0202"
/note="Sugar specificity; other site"
/db_xref="CDD:30196"
misc_feature complement(order(187693..187695,187864..187866,
187873..187875,187879..187881,187966..187968,
188014..188016))
/locus_tag="Dgeo_0202"
/note="Pyrimidine base specificity; other site"
/db_xref="CDD:30196"
gene complement(188222..189256)
/locus_tag="Dgeo_0203"
/db_xref="GeneID:4059111"
CDS complement(188222..189256)
/locus_tag="Dgeo_0203"
/note="PFAM: : (5.6e-13) Glu/Leu/Phe/Val dehydrogenase,
dimerisation region: (3.7e-10);
KEGG: dra:DR0158 leucine dehydrogenase, ev=1e-151, 78%
identity"
/codon_start=1
/transl_table=11
/product="Glu/Leu/Phe/Val dehydrogenase"
/protein_id="YP_603675.1"
/db_xref="GI:94984311"
/db_xref="InterPro:IPR000205"
/db_xref="InterPro:IPR006095"
/db_xref="InterPro:IPR006096"
/db_xref="InterPro:IPR006097"
/db_xref="GeneID:4059111"
/translation="MQIFEEMQSRGHEALTLLHHAPSGLKAALAVHSTVLGPAIAGVR
LRPMDEQEALRSALTLSESLTLKAALAGLNYGGGACVLLMPETGVDDPHAREALFRAL
GRKVRPLQSLVVLTEDIGVTPSDIAFVAQETPATLGVNTDTSSVTGYGVYRGMKAAAR
SALGSESMRGVRVAILGVGAVGRTLAEYLHREGARLTVADERPERAEALADDLDGVTV
VGAQDLLDVPCDILSPCGYGHSVHSADVPRLQCRLIAGGEHHPLSRRGEDAVKEAGIM
YIPDFAINAAGLIAAASTLTPEQAAERVYSTVSRIVHIAEQVGKPPHVVARRMAERRI
DLIGSLGRGA"
misc_feature complement(188255..189256)
/locus_tag="Dgeo_0203"
/note="Glutamate dehydrogenase/leucine dehydrogenase
[Amino acid transport and metabolism]; Region: GdhA;
COG0334"
/db_xref="CDD:30682"
misc_feature complement(188855..189223)
/locus_tag="Dgeo_0203"
/note="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain;
Region: ELFV_dehydrog_N; pfam02812"
/db_xref="CDD:202408"
misc_feature complement(188252..188830)
/locus_tag="Dgeo_0203"
/note="NAD(P) binding domain of leucine dehydrogenase,
phenylalanine dehydrogenase, and valine dehydrogenase;
Region: NAD_bind_Leu_Phe_Val_DH; cd01075"
/db_xref="CDD:133444"
misc_feature complement(order(188480..188482,188486..188488,
188549..188554,188642..188644,188654..188659,
188714..188722,188726..188728))
/locus_tag="Dgeo_0203"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:133444"
misc_feature complement(188393..188395)
/locus_tag="Dgeo_0203"
/note="Phe binding site; other site"
/db_xref="CDD:133444"
gene 189505..190842
/locus_tag="Dgeo_0204"
/db_xref="GeneID:4059112"
CDS 189505..190842
/locus_tag="Dgeo_0204"
/note="PFAM: E3 binding: (2.4e-13);
KEGG: dra:DR0131 hypothetical protein, ev=4e-66, 37%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603676.1"
/db_xref="GI:94984312"
/db_xref="InterPro:IPR004167"
/db_xref="GeneID:4059112"
/translation="MERIAPLAKILAEANGIDWRNLPGSGEGGMIVEQDILNYLTRVM
SGEEEPPPTPVDAPPPEWTGTELPAGAGLFGPGMPSADMLSSAGVDSDLAALVGQPQP
VSQATAPSAEDDALEFELEDEEDEKTALPAAAAPSPAAPASAPATLAASAPEAVPAVP
QPEPVAAQAEMPAPAAAAAGGGVMAGLGSLLSRLYQPSAAQPVPAQSAPVQPAPAAPE
VPAAQVPVSPQPEVVAPEILPVAEAEAPTERVPAPPVEDAAPAAPQTAEEQTPEPATA
PLPAAAPLPAAEARPREAVWFGTYLRRDANLAPVTELRRQLIAALGQDVPLGLLVARA
AQRHADRLGLNTVAVQDLGVNQTRTAQPGGLRDALAALERVHEGTPDLLVLDAGTLDL
DDLHLPHTLTLSVGRVQEGRAALTLQGDVDPTQAARFLAEVARTLEEPIILVL"
misc_feature 189517..189618
/locus_tag="Dgeo_0204"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
gene 191010..192224
/locus_tag="Dgeo_0205"
/db_xref="GeneID:4059113"
CDS 191010..192224
/locus_tag="Dgeo_0205"
/note="catalyzes the formation of
N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine
monophosphate and GTP in AMP biosynthesis"
/codon_start=1
/transl_table=11
/product="adenylosuccinate synthetase"
/protein_id="YP_603677.1"
/db_xref="GI:94984313"
/db_xref="InterPro:IPR001114"
/db_xref="GeneID:4059113"
/translation="MPGIAIIGAQWGDEGKGKITDFLAPQADYVVRYQGGANAGHTVT
AKGQTFKLNLLPSGVLHPGTVSILGDGMVIDPEKFLAERQNLLDGGLQPELRISDRAH
LVLPHHKFVDGRKDFVGTTGRGIGPAYADRARRVGIRFGDLADESVLRERVERLLEAK
PNSTRDAGWTSVTDALGYLLPIRDALLPFVGDTGAQLRQAIREGRNVLFEGAQATLLD
LNYGTYPFVTSSHPTVGGILVGAGVNHKAINKVYGVAKAFNTRVGHGPFPTEVFGEME
TRLRGDGSNPWDEFGTTTGRARRVGWLDLALLKYAVDVNGLDGLVINKMDILAGLDTV
KVGVGYNAAGQPVYRELPGWATTAGAESRATLPKEAQAYLDLIEETVNCPVVIFSCGP
AREQTYGAVSWD"
misc_feature 191016..192185
/locus_tag="Dgeo_0205"
/note="Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the...; Region: AdSS;
cd03108"
/db_xref="CDD:73337"
misc_feature 191019..192200
/locus_tag="Dgeo_0205"
/note="Adenylosuccinate synthetase; Region:
Adenylsucc_synt; smart00788"
/db_xref="CDD:197875"
misc_feature order(191046..191048,191052..191060,191127..191135,
191139..191141,191979..191981,191985..191987,
192180..192185)
/locus_tag="Dgeo_0205"
/note="GDP-binding site [chemical binding]; other site"
/db_xref="CDD:73337"
misc_feature order(191052..191054,191061..191063,191130..191132)
/locus_tag="Dgeo_0205"
/note="ACT binding site; other site"
/db_xref="CDD:73337"
misc_feature order(191121..191123,191361..191363,191370..191372,
191646..191648,191691..191693)
/locus_tag="Dgeo_0205"
/note="IMP binding site; other site"
/db_xref="CDD:73337"
gene 192328..192936
/gene="folE"
/locus_tag="Dgeo_0206"
/db_xref="GeneID:4059114"
CDS 192328..192936
/gene="folE"
/locus_tag="Dgeo_0206"
/note="involved in the first step of tetrahydrofolate
biosynthesis; catalyzes the formation of formate and
2-amino-4-hydroxy-6-(erythro-1,2,
3-trihydroxypropyl)dihydropteridine triphosphate from GTP
and water; forms a homopolymer"
/codon_start=1
/transl_table=11
/product="GTP cyclohydrolase I"
/protein_id="YP_603678.1"
/db_xref="GI:94984314"
/db_xref="InterPro:IPR001474"
/db_xref="GeneID:4059114"
/translation="MTTSTISAADERQEVPGLSALTYDWLTAIGENPEREGLLKTPHR
VAKAWRFLTAGYHQTLADAAGDAVFEAEGSEMVIVKDIEFYSMCEHHMLPFYGRAHIA
YIPDGKILGLSKFARIVDLYARRLQVQERITTQIADAVEELLSPRGVAVLMEGVHLCM
AMRGVQKQNSSTTTSAMRGVFKEDARTRAEFMSAVQNTLRSR"
misc_feature 192403..192915
/gene="folE"
/locus_tag="Dgeo_0206"
/note="GTP cyclohydrolase I (GTP-CH-I) catalyzes the
conversion of GTP into dihydroneopterin triphosphate. The
enzyme product is the precursor of tetrahydrofolate in
eubacteria, fungi, and plants and of the folate analogs in
methanogenic bacteria. In...; Region: GTP_cyclohydro1;
cd00642"
/db_xref="CDD:29763"
misc_feature 192403..192915
/gene="folE"
/locus_tag="Dgeo_0206"
/note="GTP cyclohydrolase I; Provisional; Region:
PLN03044"
/db_xref="CDD:178607"
misc_feature order(192409..192414,192418..192420,192424..192426,
192430..192432,192436..192444,192448..192453,
192457..192459,192469..192471,192478..192480,
192493..192495,192526..192528,192532..192534,
192544..192555,192559..192570,192574..192576,
192580..192582,192592..192597,192604..192609,
192613..192615,192619..192621,192640..192645,
192649..192651,192661..192669,192676..192678,
192706..192714,192718..192720,192727..192729,
192757..192759,192796..192804,192811..192816,
192829..192834,192838..192846,192850..192858,
192871..192876,192883..192885,192889..192897)
/gene="folE"
/locus_tag="Dgeo_0206"
/note="homodecamer interface [polypeptide binding]; other
site"
/db_xref="CDD:29763"
misc_feature order(192457..192459,192466..192468,192589..192591,
192595..192600,192655..192657,192661..192666,
192676..192678,192709..192717,192796..192798,
192802..192804,192814..192816)
/gene="folE"
/locus_tag="Dgeo_0206"
/note="active site"
/db_xref="CDD:29763"
misc_feature order(192589..192591,192595..192600,192796..192798,
192802..192804)
/gene="folE"
/locus_tag="Dgeo_0206"
/note="putative catalytic site residues [active]"
/db_xref="CDD:29763"
misc_feature order(192589..192591,192595..192600,192802..192804)
/gene="folE"
/locus_tag="Dgeo_0206"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29763"
misc_feature order(192739..192741,192748..192750,192766..192768,
192772..192774,192859..192867,192871..192885)
/gene="folE"
/locus_tag="Dgeo_0206"
/note="GTP-CH-I/GFRP interaction surface; other site"
/db_xref="CDD:29763"
gene complement(192980..193402)
/locus_tag="Dgeo_0207"
/db_xref="GeneID:4059115"
CDS complement(192980..193402)
/locus_tag="Dgeo_0207"
/note="TIGRFAM: SUF system FeS assembly protein:
(1.9e-44);
PFAM: nitrogen-fixing NifU-like-like: (3.6e-12);
KEGG: tth:TTC1374 IscU protein, ev=3e-32, 54% identity"
/codon_start=1
/transl_table=11
/product="SUF system FeS assembly protein"
/protein_id="YP_603679.1"
/db_xref="GI:94984315"
/db_xref="InterPro:IPR002871"
/db_xref="InterPro:IPR011341"
/db_xref="GeneID:4059115"
/translation="MLPEALARQIITDHSQHPRGRGEIAGVPHATRENPGCGDQVTVW
ARVEGGRLLEVRFTGRGCAISQASASLMTQALAGKGLEEARALAARYRAMVMGEAPPD
PALGDLVALGGVSRLHARRKCALLAWQALEAALAGPHE"
misc_feature complement(193034..193402)
/locus_tag="Dgeo_0207"
/note="NifU homolog involved in Fe-S cluster formation
[Energy production and conversion]; Region: IscU; COG0822"
/db_xref="CDD:31164"
misc_feature complement(193034..193387)
/locus_tag="Dgeo_0207"
/note="Iron-sulfur cluster scaffold-like proteins; Region:
IscU_like; cd06664"
/db_xref="CDD:143480"
misc_feature complement(order(193034..193039,193043..193048,
193211..193213,193217..193219,193289..193294,
193364..193369,193376..193387))
/locus_tag="Dgeo_0207"
/note="trimerization site [polypeptide binding]; other
site"
/db_xref="CDD:143480"
misc_feature complement(order(193034..193036,193217..193219,
193292..193294))
/locus_tag="Dgeo_0207"
/note="active site"
/db_xref="CDD:143480"
gene complement(193407..194600)
/locus_tag="Dgeo_0208"
/db_xref="GeneID:4059116"
CDS complement(193407..194600)
/locus_tag="Dgeo_0208"
/note="KEGG: dra:DR0339 N-acyl-L-amino acid
amidohydrolase, , ev=1e-180, 78% identity;
TIGRFAM: Peptidase M20D, amidohydrolase: (1.5e-151);
PFAM: peptidase M20: (3.6e-50) peptidase dimerisation:
(4.7e-05)"
/codon_start=1
/transl_table=11
/product="peptidase M20D, amidohydrolase"
/protein_id="YP_603680.1"
/db_xref="GI:94984316"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR010168"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:4059116"
/translation="MTQTVDPVATLRDQLIAWRRHLHMHPEVGFEEHETAAYIEAELR
KMPGLTVTRPTATSVLAVLKGGRPGRTILLRADIDALPIEEENTFEFRSRRPGVMHAC
GHDGHTAILLGVAKLLSEHPEHVPGEVRMIFQHAEEIGPGGAEELVMNTGLMDGVDVV
TGLHLNSQLPTGMVSVKPGAFMAAPDSLYLTIQGKGGHGAHPEQTVDPIAVGAQVVTN
LQHVVSRHVAALDALVVSITSFQSGTTHNVIPDTAVLQGTVRTFDPELRQRAPKLIER
VIKGVCEAHGASYTLKYEFGYRPVINTDWVAAQLREIALETVGEEHYQDAQPTMGGED
FSAYLEKAPGAYFNVGSGSDEQDSRWPHHHPRFTLDEASLETGVRMLHAAALRLTLPQ
PHPQG"
misc_feature complement(193437..194594)
/locus_tag="Dgeo_0208"
/note="Metal-dependent
amidase/aminoacylase/carboxypeptidase [General function
prediction only]; Region: AbgB; COG1473"
/db_xref="CDD:31662"
misc_feature complement(193443..194558)
/locus_tag="Dgeo_0208"
/note="M20 Peptidase Aminoacylase 1 family; Region:
M20_Acy1; cd03886"
/db_xref="CDD:193507"
misc_feature complement(order(193512..193514,194109..194111,
194187..194189,194289..194291,194295..194297))
/locus_tag="Dgeo_0208"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193507"
misc_feature complement(order(193827..193835,193851..193853,
193857..193862,193872..193892,193941..193943,
193950..193952,193959..193961,193971..193976,
194040..194042))
/locus_tag="Dgeo_0208"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193507"
gene 194651..195040
/locus_tag="Dgeo_0209"
/db_xref="GeneID:4059117"
CDS 194651..195040
/locus_tag="Dgeo_0209"
/note="KEGG: dra:DR0338 hypothetical protein, ev=1e-09,
31% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603681.1"
/db_xref="GI:94984317"
/db_xref="GeneID:4059117"
/translation="MPPHCPRAPAWRAGQAECPGCAARRPERAPAGKWGGGKAPEPVS
GNFGAPQRVTVGMKSRRSHQTSSGKLNKWLVYAPIALEIISLVRRNQQAKRSKYTRLR
KRDRALDFLLGQAERRLSGKKTRRRWF"
gene 195104..196309
/locus_tag="Dgeo_0210"
/db_xref="GeneID:4059118"
CDS 195104..196309
/locus_tag="Dgeo_0210"
/note="PFAM: FAD dependent oxidoreductase: (4.4e-76);
KEGG: xcb:XC_1962 oxidoreductase, ev=2e-85, 43% identity"
/codon_start=1
/transl_table=11
/product="FAD dependent oxidoreductase"
/protein_id="YP_603682.1"
/db_xref="GI:94984318"
/db_xref="InterPro:IPR000205"
/db_xref="InterPro:IPR000447"
/db_xref="InterPro:IPR003042"
/db_xref="InterPro:IPR006076"
/db_xref="GeneID:4059118"
/translation="MDLRSGTAFWPLKNGLMHTYPPLQADEHADVLVIGAGITGALLA
DALTGAGLDVVVLDRRDAAFGSTSASTALLQYEIDTNLVDLIRMIGQRDAERAYQLCR
EAIDQIEALISELPDDCGFARPGSLYYASHAEDVRRLREEHAARTRAGLEVEWLGAEE
VEARFGLTAPAALFSPAGAEVDPYRLTQHLLWRAQARGARIYDRTEVTQLKESASGYT
ASTDRVACVRASYVMVAAGYEAERFAGRRLAQLKDTYALVTEPLAEGQAPWPTGCLLW
ETARPYLYARTTRDGRILIGGEDDDHDNPARRDRVLPDKQRRLQDRLAALFPHLKTEV
AFAWAGTFGETQDGLAFIGPKPGSPCLLFALGYGGNGITYSMQAARMLTEHILGRAVP
DLRIFRLDR"
misc_feature 195266..196306
/locus_tag="Dgeo_0210"
/note="Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism]; Region: DadA; COG0665"
/db_xref="CDD:31009"
misc_feature 195341..196267
/locus_tag="Dgeo_0210"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene complement(196406..197650)
/locus_tag="Dgeo_0211"
/db_xref="GeneID:4059119"
CDS complement(196406..197650)
/locus_tag="Dgeo_0211"
/note="PFAM: VWA containing CoxE-like: (1e-40);
KEGG: reu:Reut_A0421 VWA containing CoxE-like, ev=6e-41,
34% identity"
/codon_start=1
/transl_table=11
/product="von Willebrand factor A"
/protein_id="YP_603683.1"
/db_xref="GI:94984319"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR008912"
/db_xref="GeneID:4059119"
/translation="MTAPLPADLSARVVALVTHLRAAHGFRVGPGEAAAALQALNAVD
LGRPGEVRDALRAVLTASREEGLIFDAAFDAFFRLPGAPPPPRLPPLLPRTDAPLPPP
SPARQGAAGQERRVPGQARAEEAETDAPSPTTRPGPERQTEGAPEGAARPLSARLSPN
AGAGGQVEAPGGDLPDLLRAAGVLVRAVELGRSRRLTPQARGSRLDARRTLRAAARTA
GDPVRLRWLGRPRRAPHFLLVLDGSRSMGPSATLLLRFAFALHLRARRVEVYAFSTGL
TRLTPRLRAARPGEALHLPDLGDAWGGGTRIGENLLRLTREERARVNRDTVVLILSDG
LDTGDPEVLTRALRDLRARAGLLVWLSPLAALPGYQPIQRAVRAALPYLDAFLPAGGV
ADLAVLGWRLRTSGSPRHTQTD"
misc_feature complement(196457..197644)
/locus_tag="Dgeo_0211"
/note="Protein containing von Willebrand factor type A
(vWA) domain [General function prediction only]; Region:
CoxE; COG3552"
/db_xref="CDD:33354"
misc_feature complement(196484..197077)
/locus_tag="Dgeo_0211"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cl00057"
/db_xref="CDD:206808"
gene complement(197647..198513)
/locus_tag="Dgeo_0212"
/db_xref="GeneID:4059120"
CDS complement(197647..198513)
/locus_tag="Dgeo_0212"
/note="PFAM: ATPase associated with various cellular
activities, AAA_5: (5.6e-12);
SMART: ATPase: (1.4e-13);
KEGG: sil:SPO2646 hypothetical protein, ev=3e-76, 54%
identity"
/codon_start=1
/transl_table=11
/product="ATPase"
/protein_id="YP_603684.1"
/db_xref="GI:94984320"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:4059120"
/translation="MTQSPSPPDLQAAFRARGYVAGDALVTALRLVVALGKPLLLEGP
AGVGKTEAAKTLAAALGTRLIRLQCYEGLDAQAALYEWNYARQLLHLRAAEVSGRAVS
DADLYGPQFLMQRPLLEAIRQEVPPVLLIDEVDRADDAFEAFLLELLAEWQVTVPELG
TLTAIARPHVLLTSNRARELSDALRRRCLYLWVDYPTEAQELEIVRARLPGIQETLAA
QVTRAVHALRELPLGKPPGVAETLDWAAALVALHRDWLDAEALDLTLGAVLKLHEDQQ
LARATLHKLAPP"
misc_feature complement(<197734..198408)
/locus_tag="Dgeo_0212"
/note="MoxR-like ATPases [General function prediction
only]; Region: COG0714"
/db_xref="CDD:31058"
misc_feature complement(197947..>198165)
/locus_tag="Dgeo_0212"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene complement(198510..198974)
/locus_tag="Dgeo_0213"
/db_xref="GeneID:4059121"
CDS complement(198510..198974)
/locus_tag="Dgeo_0213"
/note="PFAM: carbon monoxide dehydrogenase subunit G:
(3.6e-42);
KEGG: dra:DR2247 hypothetical protein, ev=5e-43, 55%
identity"
/codon_start=1
/transl_table=11
/product="carbon monoxide dehydrogenase subunit G"
/protein_id="YP_603685.1"
/db_xref="GI:94984321"
/db_xref="InterPro:IPR010419"
/db_xref="GeneID:4059121"
/translation="MKLSYSGQEQVQAPPAAVWAFVQDPERVARCLPDVQQVVVHDPT
HLEATVQVGVGMVRGKFKFKIEVQPDTAANRVNVKVQGGGLGSVVDLTASANVVDNGD
GTTTLDWTGDATMRGPVATVGGRVLDAQAQKLIRQTFQNLSAQVEARADTLA"
misc_feature complement(198534..198968)
/locus_tag="Dgeo_0213"
/note="Carbon monoxide dehydrogenase subunit G (CoxG);
Region: CoxG; cd05018"
/db_xref="CDD:176853"
misc_feature complement(order(198549..198551,198558..198566,
198570..198578,198582..198596,198636..198638,
198642..198644,198648..198650,198654..198656,
198684..198686,198690..198692,198696..198704,
198735..198737,198741..198743,198747..198749,
198765..198767,198774..198782,198792..198794,
198804..198806,198819..198821,198825..198827,
198831..198833,198837..198839,198843..198845,
198861..198863,198879..198881,198891..198893,
198906..198911,198915..198923,198948..198950,
198954..198956,198960..198962))
/locus_tag="Dgeo_0213"
/note="putative hydrophobic ligand binding site [chemical
binding]; other site"
/db_xref="CDD:176853"
gene 199012..199674
/locus_tag="Dgeo_0214"
/db_xref="GeneID:4059122"
CDS 199012..199674
/locus_tag="Dgeo_0214"
/note="KEGG: dra:DRA0004 hypothetical protein, ev=2e-37,
45% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603686.1"
/db_xref="GI:94984322"
/db_xref="GeneID:4059122"
/translation="MREARGGYTLAVSQHPSPSPVAGVLLAAGRGTRMGQPKQLALLR
GVPLVRHAALALAGGGFDVLLAVIPPGAVGEGVQAALADLPFGFAVNPDPARGLAGSF
RVAAAALPAGVAAAHFALADMPRLTPGVHARLLAAFRETGAPLVLAEYGDPDTAGVRA
PPHLFRADLFPALRVLPDADHGPRLLLQQHAREAVTLRLPADLLTDVDTPEDLARLEG
EA"
misc_feature 199063..199662
/locus_tag="Dgeo_0214"
/note="molybdopterin-guanine dinucleotide biosynthesis
protein MobA; Reviewed; Region: mobA; PRK00317"
/db_xref="CDD:178976"
misc_feature 199072..199653
/locus_tag="Dgeo_0214"
/note="GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown function;
Region: GT_2_like_f; cd04182"
/db_xref="CDD:133025"
misc_feature order(199087..199089,199093..199095,199375..199377)
/locus_tag="Dgeo_0214"
/note="Ligand binding site; other site"
/db_xref="CDD:133025"
misc_feature order(199375..199377,199627..199629,199633..199635)
/locus_tag="Dgeo_0214"
/note="metal-binding site"
/db_xref="CDD:133025"
gene complement(199697..200596)
/locus_tag="Dgeo_0215"
/db_xref="GeneID:4059123"
CDS complement(199697..200596)
/locus_tag="Dgeo_0215"
/note="TIGRFAM: cation diffusion facilitator family
transporter: (4.2e-85);
PFAM: cation efflux protein: (2.5e-109);
KEGG: dra:DR1102 cation efflux system protein, ev=1e-118,
75% identity"
/codon_start=1
/transl_table=11
/product="cation diffusion facilitator family transporter"
/protein_id="YP_603687.1"
/db_xref="GI:94984323"
/db_xref="InterPro:IPR002524"
/db_xref="GeneID:4059123"
/translation="MSEHSHGGHRHGRDASARQLRLALALTGAFLVVEVIYGFLSGSL
ALLSDAGHMLTDVAALALSLLALRLGRRPADRRRTFGYRRSEILAAALNAGALFAIGI
SILVEAYGRLREPVAVQTTPMLVVALLGLIVNLLSARILAGGAEDSLNVRSAYLEVLG
DLLGSVAVIIGALVIRLTGLTWVDPVLGAGIGLWVLPRAWSLLRSSVNVLLEGVPEGL
DLDALRADLRALPGVQEVHDLHVWSVTSGEHHLTAHLVSAETPADLLPQVHEVAERYG
IEHVTVQVEPEGVHAGHTEHLHP"
misc_feature complement(199718..200518)
/locus_tag="Dgeo_0215"
/note="Cation efflux family; Region: Cation_efflux;
cl00316"
/db_xref="CDD:213092"
misc_feature complement(199736..200512)
/locus_tag="Dgeo_0215"
/note="cation diffusion facilitator family transporter;
Region: CDF; TIGR01297"
/db_xref="CDD:211639"
gene complement(200593..201330)
/locus_tag="Dgeo_0216"
/db_xref="GeneID:4059124"
CDS complement(200593..201330)
/locus_tag="Dgeo_0216"
/note="PFAM: CHAD: (6e-09);
KEGG: dra:DR2614 hypothetical protein, ev=6e-57, 51%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603688.1"
/db_xref="GI:94984324"
/db_xref="InterPro:IPR007899"
/db_xref="GeneID:4059124"
/translation="MSRRSRAAERLKPLWDALRAGDPQAVHAARKLTRRAQAELRVAE
AGKKTERAWRDLRRAAAPLRDHDVAGGHLREALTELGVPDSTLAYFDQTWAERRAALL
TQTAWPELPPTFNLHRGWKGRARRLIEKDGQKLRRDGEAVLASDDPEQWHAWRKRLKR
YRYTLDLLGAVPPVVTGTLEALGRLQDAEVVLGVLHADPDLLRYERDRLIAREEAAHA
AARRQVRELFPALAKQLSGQDGEQAGA"
misc_feature complement(200743..201306)
/locus_tag="Dgeo_0216"
/note="CHAD domain; Region: CHAD; pfam05235"
/db_xref="CDD:203219"
gene complement(201327..202148)
/locus_tag="Dgeo_0217"
/db_xref="GeneID:4059125"
CDS complement(201327..202148)
/locus_tag="Dgeo_0217"
/note="PFAM: metallophosphoesterase: (4.4e-14);
KEGG: dra:DR0295 phosphoprotein phosphatase, ev=7e-97, 64%
identity"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_603689.1"
/db_xref="GI:94984325"
/db_xref="InterPro:IPR004843"
/db_xref="InterPro:IPR006186"
/db_xref="GeneID:4059125"
/translation="MTRPVVVVPDLHGRADLLAEAVAYVEATHGPDAHLLSLGDAIDR
GPQSLACAALLLDLHRQGRATLLMGNHERMAQEGLQWYRQYLSSRDLADYRRAMEGLS
WWISNGGESVRREAGGLTLEAFPPALAEYLDTLERVVYVTADGELHQTPPQEPSVLVA
HASPPVQHRQYPNPESAALWLRPFEGPFPLPEGVTYSVHGHTPVCNPVRLGRHVYLDL
GAYETGRLALLTVNVTGRPEVTVLEGRGNPGAARRYPNFGEPLPTRTVSLTGRRP"
misc_feature complement(201534..202139)
/locus_tag="Dgeo_0217"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature complement(201456..202130)
/locus_tag="Dgeo_0217"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
misc_feature complement(order(201546..201548,201666..201668,
201936..201941,202029..202031,202113..202115,
202119..202121))
/locus_tag="Dgeo_0217"
/note="active site"
/db_xref="CDD:163614"
misc_feature complement(order(201546..201548,201666..201668,
201939..201941,202029..202031,202113..202115,
202119..202121))
/locus_tag="Dgeo_0217"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
gene complement(202145..202459)
/locus_tag="Dgeo_0218"
/db_xref="GeneID:4059126"
CDS complement(202145..202459)
/locus_tag="Dgeo_0218"
/note="KEGG: dra:DR0296 hypothetical protein, ev=1e-27,
71% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603690.1"
/db_xref="GI:94984326"
/db_xref="GeneID:4059126"
/translation="MGYTAPMMWATDSLLVVDVLDEDAGLADVEDERGRTYQLPAEWL
PGVHDGAAYRVTVTAAGVSFTPDPAGARLLRERSKQTLLDFADEPGEADAGADPSGQA
RP"
gene 202560..203450
/locus_tag="Dgeo_0219"
/db_xref="GeneID:4059127"
CDS 202560..203450
/locus_tag="Dgeo_0219"
/note="TIGRFAM: Twin-arginine translocation pathway
signal: (0.082);
PFAM: metallophosphoesterase: (1.4e-18);
KEGG: dra:DR2345 hypothetical protein, ev=1e-89, 59%
identity"
/codon_start=1
/transl_table=11
/product="twin-arginine translocation pathway signal"
/protein_id="YP_603691.1"
/db_xref="GI:94984327"
/db_xref="InterPro:IPR004843"
/db_xref="InterPro:IPR006311"
/db_xref="GeneID:4059127"
/translation="MDTSPRSAPSLSRRRVLRGLLGGGLALGTLGGAGLAQAAHFEVT
RTQALLPGLRTPLRVAFLTDLHYGLYVFAGSVRAWVNAANAERPDLILLGGDFLDLRP
ETDPAPLLAELARLRAPLGVYGVWGNHDYDSFGRRASRRGGQARPDWAQRRADLTDAF
ARAGVRVLLNRGQAIRDDLWVGGVDDFLQGEVDVPAALAGAGERATLLLSHNPDILPD
LPGPAGLVLCGHTHGGQIRLPLIGAPVVPSRYGQRYALGWVRGAYGTPAYVSRGLGTS
GLPLRNLCPPEVTVLTLTPV"
misc_feature 202677..203444
/locus_tag="Dgeo_0219"
/note="Predicted phosphohydrolases [General function
prediction only]; Region: COG1408"
/db_xref="CDD:31598"
misc_feature 202725..203438
/locus_tag="Dgeo_0219"
/note="Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain; Region: MPP_YkuE_C;
cd07385"
/db_xref="CDD:163628"
misc_feature order(202749..202751,202755..202757,202845..202847,
202941..202946,203190..203192,203247..203249,
203253..203255)
/locus_tag="Dgeo_0219"
/note="putative active site [active]"
/db_xref="CDD:163628"
misc_feature order(202749..202751,202755..202757,202845..202847,
202941..202943,203190..203192,203247..203249,
203253..203255)
/locus_tag="Dgeo_0219"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:163628"
gene complement(203455..204570)
/locus_tag="Dgeo_0220"
/db_xref="GeneID:4059128"
CDS complement(203455..204570)
/locus_tag="Dgeo_0220"
/note="KEGG: dra:DR0039 hypothetical protein, ev=1e-123,
63% identity;
TIGRFAM: uncharacterized domain HDIG: (0.0017);
PFAM: GAF: (1.5e-06) metal-dependent phosphohydrolase, HD
subdomain: (1.4e-23);
SMART: Metal-dependent phosphohydrolase, HD region:
(3.4e-10)"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_603692.1"
/db_xref="GI:94984328"
/db_xref="InterPro:IPR000630"
/db_xref="InterPro:IPR003018"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR006675"
/db_xref="GeneID:4059128"
/translation="MTAISREVPRTPHDLSLYLTRLGLTAPDLGSAMQPVLDVLVSRT
AAVGAGYFQLRDSTLTYQARAASGDLPQGPLMEALLAHGLPPELPLVQALEAADGALF
FEDTRLDPQAAGFADLGVLALTAAPVHNQSGRLVGALLSHVFAPHPWSAEERQLVSTV
TGLLTLLAARLDAEERERAAHESALRALGLMLEARDTETQGHTDRVTALALRLGRALG
LSDTELRDLRWGAYLHDIGKIAIPDAILHCPGTLDLAAWARMQEHVNEGTRLAAQLPF
LPRAALDVIACHHECWDGSGYPRGLAGEAIPRHARIFAACDVYDALVSARPYKRAWTH
AEATAYLEQRSGHQFDPVIVRALLRVLEDEDSAAANA"
misc_feature complement(204091..204489)
/locus_tag="Dgeo_0220"
/note="GAF domain; Region: GAF; cl15785"
/db_xref="CDD:210185"
misc_feature complement(203467..>204003)
/locus_tag="Dgeo_0220"
/note="c-di-GMP phosphodiesterase class II (HD-GYP domain)
[Signal transduction mechanisms]; Region: COG2206"
/db_xref="CDD:32388"
misc_feature complement(203548..203967)
/locus_tag="Dgeo_0220"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature complement(order(203620..203622,203866..203871,
203965..203967))
/locus_tag="Dgeo_0220"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature complement(203866..203868)
/locus_tag="Dgeo_0220"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene complement(204652..205890)
/gene="glyA"
/locus_tag="Dgeo_0221"
/db_xref="GeneID:4059129"
CDS complement(204652..205890)
/gene="glyA"
/locus_tag="Dgeo_0221"
/note="catalyzes the reaction of glycine with
5,10-methylenetetrahydrofolate to form L-serine and
tetrahydrofolate"
/codon_start=1
/transl_table=11
/product="serine hydroxymethyltransferase"
/protein_id="YP_603693.1"
/db_xref="GI:94984329"
/db_xref="InterPro:IPR001085"
/db_xref="InterPro:IPR001597"
/db_xref="InterPro:IPR004839"
/db_xref="GeneID:4059129"
/translation="MTTAEPSKTVQAAFRDTAIFDLIAQEAERQRVGLELIASENFCS
AEVRAAQGSVLTNKYAEGYPGKRWYGGCEVVDEVERLAIERVKQLFGAEWANVQPHSG
SSANLAVYNALLEPGDTVLGMDLAHGGHLTHGSPVNFSGLRYRVVGYKVNPETELIDM
EEVRRLAHEHQPKMIIAGASAYSRIIDFAAFREIADEVGALLFADIAHIAGLIAAGLH
PNALPHAHVVASTTHKTLRGPRGGVILSNDPEIGAKIDRAVFPGYQGGPLEHVIAAKA
VAFGEALQPEFKDYAAQIIRNAQALAGAFQNRGYRVVSGGTDNHLFVLDLRPQGLNGT
KATRRLDANDITISKSTLPYDTEKILHGGGIRIGTPAITTRGMKEADMERVADLIDRA
LKGEDVKAEVHAFAGSFPLP"
misc_feature complement(204655..205848)
/gene="glyA"
/locus_tag="Dgeo_0221"
/note="serine hydroxymethyltransferase; Reviewed; Region:
glyA; PRK00011"
/db_xref="CDD:178792"
misc_feature complement(204673..205845)
/gene="glyA"
/locus_tag="Dgeo_0221"
/note="Serine-glycine hydroxymethyltransferase (SHMT).
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl...; Region: SHMT;
cd00378"
/db_xref="CDD:99733"
misc_feature complement(order(205033..205035,205087..205089,
205462..205467,205570..205572,205591..205593,
205636..205638,205660..205665,205717..205719,
205771..205773,205786..205788,205813..205818,
205837..205839,205843..205845))
/gene="glyA"
/locus_tag="Dgeo_0221"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99733"
misc_feature complement(order(204793..204795,205171..205173,
205189..205194,205267..205269,205276..205278,
205351..205353,205501..205503,205582..205587,
205684..205686,205714..205716,205774..205776))
/gene="glyA"
/locus_tag="Dgeo_0221"
/note="glycine-pyridoxal phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99733"
misc_feature complement(order(204793..204795,205189..205191,
205501..205503,205774..205776))
/gene="glyA"
/locus_tag="Dgeo_0221"
/note="active site"
/db_xref="CDD:99733"
misc_feature complement(order(204841..204843,205111..205113,
205498..205500,205504..205506,205516..205518,
205687..205689,205708..205710))
/gene="glyA"
/locus_tag="Dgeo_0221"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:99733"
gene complement(205968..207467)
/gene="cvrA"
/locus_tag="Dgeo_0222"
/gene_synonym="nhaP2; ycgO"
/db_xref="GeneID:4059130"
CDS complement(205968..207467)
/gene="cvrA"
/locus_tag="Dgeo_0222"
/gene_synonym="nhaP2; ycgO"
/note="the Vibrio parahaemolyticus gene VP2867 was found
to be a potassium/proton antiporter; can rapidly extrude
potassium against a potassium gradient at alkaline pH when
cloned and expressed in Escherichia coli"
/codon_start=1
/transl_table=11
/product="potassium/proton antiporter"
/protein_id="YP_603694.1"
/db_xref="GI:94984330"
/db_xref="InterPro:IPR002086"
/db_xref="InterPro:IPR006037"
/db_xref="InterPro:IPR006153"
/db_xref="GeneID:4059130"
/translation="MGEVHAEVYLLAAGVLLLASLVVSRLGGRLGIPGLLLFLGVGMA
AGSDGLGIQFSDYRFAQALGTVALCFILFQGGLTTNWRETRPVIWRGLSLATLGVLLT
AGVMAAFAHFLLAWPWLAAWMLGAVVSSTDASAVFSVLKERALGLRGDIAPLLEFESG
GNDPMAVFLTVGILELIAHPGMSVLEIVPLFLRQMLLGALLGAGLGHAALWVLNRLQL
QFEGLYSVLSLALALTIFSATAVAGGSGFLAIYIAGVILGNADFIHKRSLLAFHDVLA
WLMQVVMFLTLGLLVNPHELWPVAGLGLSFALVLAFVARPLAVYLGLAGSPMPLNQKT
MVAWVGLRGAVPIVLATFPLLAGVPQAHTLFNVVFFIVLTSVLLQGTTLPLVATWLGV
REPLPLPAANPISYTPTGHSRNALVEIEVQQGSDADGQRIVDLHLPPDALVILIHRGG
EFLIPKGATRLEAGDSLQVLAREDELREVRRRLEVKGNLEHHNVEHRTG"
misc_feature complement(206067..207341)
/gene="cvrA"
/locus_tag="Dgeo_0222"
/gene_synonym="nhaP2; ycgO"
/note="potassium/proton antiporter; Reviewed; Region:
PRK05326"
/db_xref="CDD:180017"
misc_feature complement(<206067..206222)
/gene="cvrA"
/locus_tag="Dgeo_0222"
/gene_synonym="nhaP2; ycgO"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:202105"
gene 207679..208698
/gene="pheS"
/locus_tag="Dgeo_0223"
/db_xref="GeneID:4059131"
CDS 207679..208698
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a heterotetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 1 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit alpha"
/protein_id="YP_603695.1"
/db_xref="GI:94984331"
/db_xref="InterPro:IPR002319"
/db_xref="InterPro:IPR004188"
/db_xref="InterPro:IPR004529"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:4059131"
/translation="MREEALQAIQEAPDLPALQAVKTRYLGKSGLVTRELGALGKLPP
EERKRRGAELNALRQAIDAALTEREAVLKRAALDARLASEAIDVTLPGLSLPAGGLHP
ISRVYDDLIRIFERMGYAVVEGPEVEDEHHNFEALNVPWYHPARDLQDTFWLEDGRLL
RTHTSPMQVRYMVDHEPPLKVVVRGKVYRYEATDATHESMFHQLEGLVVGDGISMADL
KGTVAELARGLYGPSAKVRFQPSYYPFVEPGADFAVWWDNPRGESKWLELGGCGMVHP
NVFRAVDDLREAAGKPRVYEGKTGFAFGLGPERIAMLKYGIPDIRYFYANDPRVIGQF
RGELG"
misc_feature 207679..208680
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="phenylalanyl-tRNA synthetase subunit alpha;
Validated; Region: pheS; PRK00488"
/db_xref="CDD:179046"
misc_feature 207706..207924
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="Aminoacyl tRNA synthetase class II, N-terminal
domain; Region: Phe_tRNA-synt_N; pfam02912"
/db_xref="CDD:111764"
misc_feature 207979..208665
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain
catalytic core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its structure
and the presence of three characteristic sequence motifs.
This domain is primarily responsible...; Region:
PheRS_alpha_core; cd00496"
/db_xref="CDD:29807"
misc_feature order(207979..207981,207988..207990,207997..208002,
208021..208023,208036..208041,208045..208053,
208102..208104,208117..208119,208129..208146,
208189..208191,208210..208218,208228..208230,
208234..208236,208240..208242,208246..208248,
208270..208272,208321..208329,208333..208338,
208396..208398,208417..208425,208429..208431,
208501..208506,208648..208650,208654..208662)
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29807"
misc_feature 208033..208053
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="motif 1; other site"
/db_xref="CDD:29807"
misc_feature order(208117..208125,208165..208167,208171..208173,
208180..208182,208243..208245,208249..208251,
208264..208272,208279..208281,208285..208287,
208291..208293,208405..208407,208411..208416,
208477..208494,208585..208596,208603..208605,
208636..208638)
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="active site"
/db_xref="CDD:29807"
misc_feature 208240..208251
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="motif 2; other site"
/db_xref="CDD:29807"
misc_feature 208588..208605
/gene="pheS"
/locus_tag="Dgeo_0223"
/note="motif 3; other site"
/db_xref="CDD:29807"
gene 208760..211219
/gene="pheT"
/locus_tag="Dgeo_0224"
/db_xref="GeneID:4059132"
CDS 208760..211219
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a tetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 2 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit beta"
/protein_id="YP_603696.1"
/db_xref="GI:94984332"
/db_xref="InterPro:IPR002547"
/db_xref="InterPro:IPR004532"
/db_xref="InterPro:IPR005121"
/db_xref="InterPro:IPR005146"
/db_xref="InterPro:IPR005147"
/db_xref="GeneID:4059132"
/translation="MKLPYSWLKELVPQLPPVQDLEPILANMGLPLEGIEEVPAPPEG
VLLAAVTAAEPIEGTQLTQLTLDVGPHGSKTVASGAPNAAGLPAGTMVALVTPGTRLG
DTVYGVRSLQGVESWGMAASAKELGIGETSTGLLLFPAGTAAPGTPLYELWAADSVLD
VEVTPNRADVLSALGLARDLAAFLRLDLVQPEAGPPPSGEGEIRVTLPPRGVTLERDP
SRKLRFGCDHFAARTVSGVRNGPSPLWMQRRLTLSGMRPIDLIVDTSNYVMLELGQPT
ALYDRRDVVDDQIIVSFGLRQGEVVRDLLGNEHLVGPEDLLIRDGREVTIPTVAEAFA
AAGQPKPGVGILGIAGIVGGDHGQVRADTSDVVIESAHFDPVLLRRTSTRLGLKTDAV
YRFERGVDPLLAPRGANRVAGLLAQFGGGQAHPGATLVGQPEVPGPIEATGDQIRALL
GMEVGTDEMVDILTRLGCRVEREDDHLSVTPPSWRVDLTIWQDVAEEVARLHGYAHLP
ETLPTLRVHESNLGAEQASQDRAGLRRTLSGLGFQEVVTYTFTNDEEAVRARSERPGV
RLRNPLTADRTALRTALYPSLLKAAQVHPKGERVLLFELGRVFPAAGETERLGLLMRG
PLAPQTYAPGVAGSFAVFKGLVEALAGSLGANLEVRQLRGDAVPAALHPGIAGEVVWN
GVTVGWLGALHPEVAQDFGLQGDTFLLEVGLPLPGRSWSFRDPSRAPAAWRDLAVITP
QEVSYGDIAALLRREAGELLESVEPFDVYVGAPIPEGQRSVAVRLVFRGERTLTDAEV
DPIMERLMGAVRAQGWSIREK"
misc_feature 208760..211213
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="phenylalanyl-tRNA synthetase subunit beta;
Reviewed; Region: pheT; PRK00629"
/db_xref="CDD:179078"
misc_feature 208892..209206
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="tRNA-binding-domain-containing prokaryotic
phenylalanly tRNA synthetase (PheRS) beta chain. PheRS
aminoacylate phenylalanine transfer RNAs (tRNAphe).
PheRSs belong structurally to class II aminoacyl tRNA
synthetases (aaRSs) but, as they aminoacylate...; Region:
tRNA_bind_bactPheRS; cd02796"
/db_xref="CDD:48399"
misc_feature order(208937..208939,208976..208978,209048..209050,
209084..209086,209105..209107,209114..209116)
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:48399"
misc_feature 209435..209992
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="B3/4 domain; Region: B3_4; smart00873"
/db_xref="CDD:197941"
misc_feature 210071..210271
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="tRNA synthetase B5 domain; Region: B5; smart00874"
/db_xref="CDD:197942"
misc_feature 210356..210898
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="Phenylalanyl-tRNA synthetase (PheRS) beta chain
core domain. PheRS belongs to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure. While class
II aaRSs generally aminoacylate the 3'-OH ribose of the
appropriate tRNA, PheRS is an...; Region:
PheRS_beta_core; cd00769"
/db_xref="CDD:29814"
misc_feature order(210362..210364,210371..210373,210383..210385,
210389..210391,210395..210403,210455..210466,
210497..210499,210563..210565,210578..210580,
210584..210586,210590..210592,210599..210601,
210692..210694)
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29814"
misc_feature 210383..210403
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="motif 1; other site"
/db_xref="CDD:29814"
misc_feature 210515..210526
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="motif 3; other site"
/db_xref="CDD:29814"
misc_feature 210584..210592
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="motif 2; other site"
/db_xref="CDD:29814"
misc_feature 210935..211210
/gene="pheT"
/locus_tag="Dgeo_0224"
/note="Ferredoxin-fold anticodon binding domain; Region:
FDX-ACB; pfam03147"
/db_xref="CDD:202554"
gene 211345..212619
/locus_tag="Dgeo_0225"
/db_xref="GeneID:4059133"
CDS 211345..212619
/locus_tag="Dgeo_0225"
/note="PFAM: Cys/Met metabolism
pyridoxal-phosphate-dependent enzymes: (9.2e-143) aromatic
amino acid beta-eliminating lyase/threonine aldolase:
(6.9e-05);
KEGG: dra:DR2186 O-acetylhomoserine (thiol)-lyase,
ev=1e-175, 73% identity"
/codon_start=1
/transl_table=11
/product="O-acetylhomoserine
aminocarboxypropyltransferase"
/protein_id="YP_603697.1"
/db_xref="GI:94984333"
/db_xref="InterPro:IPR000277"
/db_xref="InterPro:IPR001597"
/db_xref="GeneID:4059133"
/translation="MTDLRPPLSETPPTDTDWSFETAAVQTGIPRGLGQTVGIPVHQA
AAFQFATLEEAQDEFARNQGLSYARLQNPTVRALEERITALEGGTATVALASGQAATM
TAILSVCRAGDHVVASASLFGGSAGLLNNILPLMGISATLTANTPQAIEAALQPNTRL
VWAETIGNPAGDVPDLSALAELAHAHGALLGIDNTWGGVGYLCRPLDFGADMVTHSLT
KWAGGHGAVLGGSVTVGTHHDLTRNPIYTEGGENSILNVRGEQALAWRQRWLGAHQLG
MTLSPHSAFLLAQGLETLALRLGRESETALALAEWLEAQPQVGRVSYPGLPSSPWHAL
ARTYLHGGFGAVLTFEVPDPAAFLSRLRVIRIAPNLGDTRTLVVHPWTTTHGRLPEAA
RRAAGVTPQTIRMSVGLESLADLQADLAGALG"
misc_feature 211381..212577
/locus_tag="Dgeo_0225"
/note="O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism]; Region: MET17; COG2873"
/db_xref="CDD:32700"
misc_feature 211462..212577
/locus_tag="Dgeo_0225"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature order(211633..211638,211645..211647,211834..211836,
211921..211923,211930..211932,211990..211992,
211999..212001)
/locus_tag="Dgeo_0225"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 211999..212001
/locus_tag="Dgeo_0225"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(212621..213226)
/locus_tag="Dgeo_0226"
/db_xref="GeneID:4059134"
CDS complement(212621..213226)
/locus_tag="Dgeo_0226"
/note="PFAM: TM2: (6.7e-07);
KEGG: dra:DR2326 hypothetical protein, ev=3e-41, 42%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603698.1"
/db_xref="GI:94984334"
/db_xref="InterPro:IPR007829"
/db_xref="GeneID:4059134"
/translation="MTNSDEKSPETAPGREVPAWVDEVLRAETAPLPAREPVNDLRIP
EPAPTQPGPHAAGDDWVARVTGNTARTPQVDGEPPSSPSTWPENQPRLATDVPADIAQ
KRLIAGLLGIVLGSLGVHKFYLGLNTPGVIMLGVSIGVWVLAFLLGLLTLGFGLILTL
PLAALVSGAVGLLGLIEGILYLTKSDEAFYREYVIGQKPWL"
gene 213312..213992
/locus_tag="Dgeo_0227"
/db_xref="GeneID:4059135"
CDS 213312..213992
/locus_tag="Dgeo_0227"
/note="PFAM: isochorismatase hydrolase: (1.4e-05);
KEGG: tte:TTE1842 amidases related to nicotinamidase,
ev=3e-28, 36% identity"
/codon_start=1
/transl_table=11
/product="isochorismatase hydrolase"
/protein_id="YP_603699.1"
/db_xref="GI:94984335"
/db_xref="InterPro:IPR000868"
/db_xref="GeneID:4059135"
/translation="MTLQEQARQQADLLQAWMSALPEWVLTTRPDRVAVVCVDLVEGF
TREGPLASPRVAEIIPRIVQLLRRLLDRGVPAENVVLVQDSHPLDAKEFQAYPPHCVA
GTAEAQAVAELRALPEFARFQHFQKNSIASHTSPAFQAWLAQAEFDVVIALGDVTDLC
LYTLALHLVTFGMANQQDWTVVVPEECVQTWDAPDHPGDLYHALFLHQLARNGVRVVR
ALSVGAES"
misc_feature 213411..213899
/locus_tag="Dgeo_0227"
/note="Cysteine hydrolases; This family contains
amidohydrolases, like CSHase (N-carbamoylsarcosine
amidohydrolase), involved in creatine metabolism and
nicotinamidase, converting nicotinamide to nicotinic acid
and ammonia in the pyridine nucleotide cycle. It...;
Region: cysteine_hydrolases; cd00431"
/db_xref="CDD:29548"
misc_feature order(213426..213428,213690..213692,213789..213791)
/locus_tag="Dgeo_0227"
/note="catalytic triad [active]"
/db_xref="CDD:29548"
misc_feature 213774..213779
/locus_tag="Dgeo_0227"
/note="conserved cis-peptide bond; other site"
/db_xref="CDD:29548"
gene complement(214016..215086)
/locus_tag="Dgeo_0228"
/db_xref="GeneID:4059136"
CDS complement(214016..215086)
/locus_tag="Dgeo_0228"
/note="NadM-Nudix subfamily; involved in creation of
nicotanimide adenine dinucleotide NAD from either
biosynthetic or salvage pathways"
/codon_start=1
/transl_table=11
/product="bifunctional nicotinamide mononucleotide
adenylyltransferase/ADP-ribose pyrophosphatase"
/protein_id="YP_603700.1"
/db_xref="GI:94984336"
/db_xref="InterPro:IPR000086"
/db_xref="InterPro:IPR004820"
/db_xref="InterPro:IPR004821"
/db_xref="GeneID:4059136"
/translation="MTAPHDPALTSPPPRTRKRTFGVYIGRFEPPHQAHLLVMLEALQ
WVQKLIVVIGSARAARNTKNPFTAEERQEMITAMLREAGVAKSRLLFVQVRDSFYNEG
LWLSEVQRGVAEHTRGSSDVALIGHFKDESSYYLRSFPAWEFLPTHVVSPLNATDVRK
ALFEDRLDEVRSMVPPTVHAFLSAFRQTPAYAELRSEYDDLRESRAAWLGAPFPPVFV
TADAVVTRSGHVLVVRRAGFPGRGRLAMPGGFLRPDETLLACAVRQVHSETGLNAAVN
LTERVRSQAVFDYPGRSQRGRTVTHAFHFDLGLGQLPVLQAAAGAAEAFWMPFSEALA
EPELFFEDHHAIIESFLMRGKL"
misc_feature complement(214028..215047)
/locus_tag="Dgeo_0228"
/note="bifunctional nicotinamide mononucleotide
adenylyltransferase/ADP-ribose pyrophosphatase;
Provisional; Region: PRK05379"
/db_xref="CDD:180046"
misc_feature complement(214490..215026)
/locus_tag="Dgeo_0228"
/note="Nicotinamide/nicotinate mononucleotide
adenylyltransferase of bifunctional proteins, also
containing a Nudix hydrolase domain; Region: NMNAT_Nudix;
cd02168"
/db_xref="CDD:173919"
misc_feature complement(order(214610..214612,214619..214630,
214682..214687,214700..214702,214706..214711,
214775..214777,214784..214789,214799..214801,
214922..214927,214982..214984,214991..214993,
215003..215017))
/locus_tag="Dgeo_0228"
/note="active site"
/db_xref="CDD:173919"
misc_feature complement(214982..214993)
/locus_tag="Dgeo_0228"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:173919"
misc_feature complement(214028..214465)
/locus_tag="Dgeo_0228"
/note="ADP-ribose pyrophosphatase [Nucleotide transport
and metabolism]; Region: COG1051"
/db_xref="CDD:31251"
misc_feature complement(order(214280..214306,214334..214342))
/locus_tag="Dgeo_0228"
/note="nudix motif; other site"
/db_xref="CDD:72880"
gene 215464..216510
/locus_tag="Dgeo_0229"
/db_xref="GeneID:4059137"
CDS 215464..216510
/locus_tag="Dgeo_0229"
/note="PFAM: protein phosphatase 2C-like: (3.5e-07);
KEGG: dra:DR2513 hypothetical protein, ev=1e-117, 66%
identity"
/codon_start=1
/transl_table=11
/product="Ser/Thr phosphatase"
/protein_id="YP_603701.1"
/db_xref="GI:94984337"
/db_xref="InterPro:IPR001932"
/db_xref="GeneID:4059137"
/translation="MCAAPPLLSAGLLTDVGRQRRLNQDAVLALDLPQGGLYAVADGM
GGHAAGELAANLALDALSQHYLEGRGSPPERLAEAVQAANLAVLQHAVGEYVGMGTTL
LALLIDRGAALLAHVGDSRAYLLRAGKLQRLTEDHSWVAEQVRLGNLTEAEAQNHHWR
SVISNGLGAEKNVRLELFGLPLRAGDRLLLCSDGLSGVVGESTLLELLARSLPPERTV
RELINAANEAGGPDNITAVVVDILRDQRLPHYPLPVRRSDGPMDVQTLLRAQRRSRPL
TYVLLILAYFTLLGVMLIPEHRTLVALLGTLLLIGVTITQRLARARLRRSAPPRSPGR
AASPPDRDPRETPG"
misc_feature 215500..216186
/locus_tag="Dgeo_0229"
/note="Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence...; Region: PP2Cc; cd00143"
/db_xref="CDD:29062"
misc_feature order(215521..215523,215533..215538,215587..215595,
216040..216042,216157..216159)
/locus_tag="Dgeo_0229"
/note="active site"
/db_xref="CDD:29062"
gene 216507..216914
/locus_tag="Dgeo_0230"
/db_xref="GeneID:4059138"
CDS 216507..216914
/locus_tag="Dgeo_0230"
/note="TIGRFAM: YjgF-like protein: (1e-80);
PFAM: Endoribonuclease L-PSP: (1e-64);
KEGG: dra:DR2512 protein translation inhibitor, ,
ev=2e-49, 80% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603702.1"
/db_xref="GI:94984338"
/db_xref="InterPro:IPR006056"
/db_xref="InterPro:IPR006175"
/db_xref="GeneID:4059138"
/translation="MTLAPVTVEPMKEIVQTPEAPAAIGPYSQATRFGNLVITSGQIP
LRPDGTLVEGGIEAQTRQVLDNLSAVLAAAGTDLSRVVKTTVFLADMNEFAAMNAVYA
EYFQAPYPARSTVQVARLPRDVRVEIEVMAEWH"
misc_feature 216585..216902
/locus_tag="Dgeo_0230"
/note="YjgF, YER057c, and UK114 belong to a large family
of proteins present in bacteria, archaea, and eukaryotes
with no definitive function. The conserved domain is
similar in structure to chorismate mutase but there is no
sequence similarity and no...; Region:
YjgF_YER057c_UK114_family; cd00448"
/db_xref="CDD:100004"
misc_feature order(216585..216590,216597..216599,216603..216605,
216612..216614,216618..216620,216624..216629,
216744..216746,216750..216755,216759..216761,
216765..216767,216798..216800,216807..216809,
216834..216857,216885..216887,216891..216893,
216897..216899)
/locus_tag="Dgeo_0230"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100004"
misc_feature order(216585..216587,216786..216788,216798..216800,
216840..216842,216885..216887)
/locus_tag="Dgeo_0230"
/note="putative active site [active]"
/db_xref="CDD:100004"
gene 217010..217849
/locus_tag="Dgeo_0231"
/db_xref="GeneID:4059139"
CDS 217010..217849
/locus_tag="Dgeo_0231"
/note="PFAM: PSP1: (1.9e-37);
KEGG: dra:DR2511 hypothetical protein, ev=1e-130, 83%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603703.1"
/db_xref="GI:94984339"
/db_xref="InterPro:IPR007557"
/db_xref="GeneID:4059139"
/translation="MVVLPVRFERSPRLHPMLSQEPYAVGTRVVVQGKRGPEVATVRG
EGTAPDPQARYGAVLRAAAPEDLARWDELYRQGEDLKWLLRARARERGLPVKIVAVEF
TLDESLVTVSYSAEERIELNSLIGDLRAHTRARVNFAAVGPREQAQMIGALGACGREN
CSSSHLQEFAPVSIRMARDQQLPLNPEKLSGPCGRLLCCLQFEHTQYLELLRDLPRKN
ARVCHTGSGACGKVTKLHPLAGTVDVQTEQGILTNVPAAELTRAPDGAGGRGRGPGAE
AED"
misc_feature 217010..217756
/locus_tag="Dgeo_0231"
/note="Uncharacterized homolog of PSP1 [Function unknown];
Region: COG1774"
/db_xref="CDD:31960"
gene complement(218952..219245)
/locus_tag="Dgeo_0233"
/db_xref="GeneID:4059141"
CDS complement(218952..219245)
/locus_tag="Dgeo_0233"
/note="TIGRFAM: Protein of unknown function DUF196:
(1.3e-18);
KEGG: mta:Moth_0492 protein of unknown function DUF196,
ev=5e-22, 52% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603705.1"
/db_xref="GI:94984341"
/db_xref="InterPro:IPR003799"
/db_xref="GeneID:4059141"
/translation="MIDLLICYDIATQTEAGRKRLRRVAKVCVAHGQRVQHSVFEVSV
SEIQLLTLRQKLLNILDPTEDSIRLYRLRQPRDKFVEAYGLDHYRDLSDPLIL"
misc_feature complement(218988..219236)
/locus_tag="Dgeo_0233"
/note="CRISPR/Cas system-associated protein Cas2; Region:
Cas2_I_II_III; cd09725"
/db_xref="CDD:187856"
gene complement(219242..220270)
/locus_tag="Dgeo_0234"
/db_xref="GeneID:4059142"
CDS complement(219242..220270)
/locus_tag="Dgeo_0234"
/note="TIGRFAM: CRISPR-associated protein Cas1: (8e-88);
PFAM: protein of unknown function DUF48: (1.1e-33);
KEGG: mta:Moth_0493 CRISPR-associated protein Cas1,
ev=3e-87, 47% identity"
/codon_start=1
/transl_table=11
/product="CRISPR-associated Cas1 family protein"
/protein_id="YP_603706.1"
/db_xref="GI:94984342"
/db_xref="InterPro:IPR002729"
/db_xref="GeneID:4059142"
/translation="MRQLLNTLYIQTQGTYLHLDTDNIRVEVERTKKAMLPLHHIEGV
VVFGNVLLSPFLIHRLAREHKPVTWLSEHGRFMARTETPMSGNVLLRTAQHACAGNAA
RTLAIARLIAAGKLQNQKVTLLRAAREAEADDAALLRQAARDINVQIACLPLTETVDE
VRGTEGTAARLYWEVFPLMLRQNRDFFWLSERHRRPARDPINALLNFVYTVLANDCAS
ACQAVGLDPQLGFLHALRPGRSSLALDLMEELRPVIADRAILTLINRQQLTPRDFVLH
EGGTVSITEEGRKTILAHLAERRREEVMHPLTARKTPLGLLSHVQARLLAQHLRGDRP
HYPPYLHR"
misc_feature complement(219251..220261)
/locus_tag="Dgeo_0234"
/note="CRISPR/Cas system-associated protein Cas1; Region:
Cas1_I-C; cd09721"
/db_xref="CDD:187852"
gene complement(220267..220902)
/locus_tag="Dgeo_0235"
/db_xref="GeneID:4059143"
CDS complement(220267..220902)
/locus_tag="Dgeo_0235"
/note="TIGRFAM: CRISPR-associated protein Cas4: (6.2e-33);
KEGG: eba:ebA3284 predicted RecB family exonuclease,
ev=3e-44, 47% identity"
/codon_start=1
/transl_table=11
/product="CRISPR-associated Cas4 family protein"
/protein_id="YP_603707.1"
/db_xref="GI:94984343"
/db_xref="InterPro:IPR013343"
/db_xref="GeneID:4059143"
/translation="MFPKPVPEPLLLSSLAQYAYCPRRCALVHVEQEWADNIWTVRGE
QLHERAHGGGEEARGEVRILRALPLFSHQHGLAGTADVVELRPVPYPVEYKSSRYPKT
HRLGHLVEEVQLCAQALCLEEMFGQPVPQGALYHIASRKRREVTFTPELRRAVLEAAG
GVRELLRCGTLPPPAADDRCHWCSLQEACEPFTPRDFPHGYDPFSTSLEDM"
misc_feature complement(220333..220866)
/locus_tag="Dgeo_0235"
/note="CRISPR/Cas system-associated protein Cas4; Region:
Cas4_I-A_I-B_I-C_I-D_II-B; cl00641"
/db_xref="CDD:207146"
gene complement(220910..221887)
/locus_tag="Dgeo_0236"
/db_xref="GeneID:4059144"
CDS complement(220910..221887)
/locus_tag="Dgeo_0236"
/note="TIGRFAM: CRISPR-associated protein Csd2:
(2.3e-123);
PFAM: CRISPR-associated protein TM1801: (2e-30);
KEGG: mca:MCA0654 CRISPR-associated TM1801 family protein,
ev=9e-87, 55% identity"
/codon_start=1
/transl_table=11
/product="CRISPR-associated Csd2 family protein"
/protein_id="YP_603708.1"
/db_xref="GI:94984344"
/db_xref="InterPro:IPR006482"
/db_xref="InterPro:IPR013418"
/db_xref="GeneID:4059144"
/translation="MTQTSSPLRNRYEFLLLFDVENGNPNGDPDSGNAPRVDPEDGHG
LVSDVALKRRVRNYVQAAGEQIFIQHGTNLNRPIFQAKQASGGGSKGKQDVDAARRWM
CEHFYDVRTFGAVMSTGANAGQVRGPVQLTFARSLDPVFAIEASITRGAVAEDIKNAK
TLDDFLNWEAQQDEDKLRTMGRKSLIPYGLFATKGFVSAHLAQGTGFSEADLKLLLEA
LLNMYEHDRSASKGLMSSRRLFVFRHVGTDSDPQQRARQAVLGCAPAHKLLDLGQVIE
VRRKDEHKPARALSDYEVTVHLDRLPAGVELLDLDSWDEARYHDGWQSR"
misc_feature complement(220958..221857)
/locus_tag="Dgeo_0236"
/note="CRISPR/Cas system-associated RAMP superfamily
protein Cas7; Region: Cas7_I-C; cl01465"
/db_xref="CDD:207419"
gene complement(221890..223875)
/locus_tag="Dgeo_0237"
/db_xref="GeneID:4059145"
CDS complement(221890..223875)
/locus_tag="Dgeo_0237"
/note="TIGRFAM: CRISPR-associated protein, CT1133:
(1.8e-23);
KEGG: hch:HCH_02815 hypothetical protein, ev=6e-37, 29%
identity"
/codon_start=1
/transl_table=11
/product="CRISPR-associated Csd1 family protein"
/protein_id="YP_603709.1"
/db_xref="GI:94984345"
/db_xref="InterPro:IPR010144"
/db_xref="GeneID:4059145"
/translation="MLAALIRQAQQAGLSPEPGFAPKELHWLAQLHSGKFTGVLPLRE
GKKGRQVARCPELSQPEMMALPKALGQTQAAHFLADSCGVIALLPERAGQEVDTKTQA
KHGAYAALLERAAQDLPQLLPVLEVLRDPAELAELRAELAQRGAKATDRLSFAVDGLD
LLESELWHDWWRRFRRQVFGQPTTTGTMLDLSSGEVVTPAKTHPKLNKLGVGAMPTGA
SLIGYDKEAFSSYGLQAGENGAVSEENAAAYRAALEHLLAQAPVLGQMKVAVWFDHRQ
AEGQALIDAIENPATLTQASETFSWDDWDDSASVAVVQTPEQQAAVAHTRAQQLLSAL
RRGETPPTLTAQYFALAISGASGRAMVRDWHTGSLEHLAEAVATWFEDLAITNLSGKR
AKRPRFFSLLMNIQRPKPQSTSMDDYLKPIRNLQLPLWRAALDPNAPIPFSAVAKLME
AHKAQVMTGQFSEALSRDGDGEDKGRIYTRMALLKAYHNRKARRQLARGQGGFLMSSS
VDPHHPSPAYHCGRLMYLLANVQDAQGSDVNAGVVQRYYGAASSTPALVLGRLTRLSQ
HHLAKIAREKPGLALTLERDIAAVWSALGHDLPKTLSLEEQSLFALGYYQQLADSVAR
RQDLAAQRKAATAQADPHPETSPLAETTQTEQTAQGE"
misc_feature complement(222025..223857)
/locus_tag="Dgeo_0237"
/note="CRISPR-associated protein Cas8c/Csd1, subtype
I-C/DVULG; Region: cas_Csd1; TIGR01863"
/db_xref="CDD:188176"
misc_feature complement(222025..223842)
/locus_tag="Dgeo_0237"
/note="CRISPR/Cas system-associated protein Cas8c; Region:
Cas8c_I-C; cl12004"
/db_xref="CDD:187971"
gene complement(223875..224630)
/locus_tag="Dgeo_0238"
/db_xref="GeneID:4059146"
CDS complement(223875..224630)
/locus_tag="Dgeo_0238"
/note="TIGRFAM: CRISPR-associated protein, CT1134:
(1.6e-23) CRISPR-associated protein Cas5: (1.2e-10);
KEGG: msu:MS0988 hypothetical protein, ev=4e-36, 37%
identity"
/codon_start=1
/transl_table=11
/product="CRISPR-associated Cas5d family protein"
/protein_id="YP_603710.1"
/db_xref="GI:94984346"
/db_xref="InterPro:IPR010155"
/db_xref="InterPro:IPR013422"
/db_xref="GeneID:4059146"
/translation="MTQHPPPGRTFVLEVWGDYGCFTRPELKVERMSYPVMTPSAARN
IFDAIYLEFDPQTRRPAHRWEISRIEILEPVRYVALMRNEVKEKISEPSVKKWMKDPA
QLVPILADATKDEVGTDTKGRTQRQTMALKSPHYRISGHAVLFEEDGALRQKIERSFE
RRARRGQCIFQPYLGCREFAAAFELVAEQPVVPPIPHDEEVGWMLYDVFDLSRPGSRN
DAPHISLFQANIRGGVLEVPPYHSADVRKPGGH"
misc_feature complement(223917..224603)
/locus_tag="Dgeo_0238"
/note="CRISPR-associated protein (Cas_Cas5); Region:
Cas_Cas5d; pfam09704"
/db_xref="CDD:204288"
misc_feature complement(223917..224600)
/locus_tag="Dgeo_0238"
/note="CRISPR/Cas system-associated RAMP superfamily
protein Cas5; Region: Cas5_I; cl12040"
/db_xref="CDD:212341"
gene complement(224788..227106)
/locus_tag="Dgeo_0239"
/db_xref="GeneID:4059147"
CDS complement(224788..227106)
/locus_tag="Dgeo_0239"
/note="PFAM: metal-dependent phosphohydrolase, HD
subdomain: (0.00011);
SMART: DEAD/DEAH box helicase-like: (2.2e-07);
KEGG: hypothetical protein, ev=1e-110, 40% identity"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_603711.1"
/db_xref="GI:94984347"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR011545"
/db_xref="GeneID:4059147"
/translation="MPFLLGRTRFWQRPRGVTTYYAHTFPGDATRQRWQRLKDHAAQV
AEQARQYAAPFGEGDRAALAGLLHDLGKYGVLFQRRLCGLERGLDHWSAGACLAKQAY
RDAGLALAIAGHHTGLPCGDAETLRDLTLERLSTQHPLGLRLTEPDPDQTNLKKLVQR
LLEDGLTLPRPGVLPLRPGQTAADMLDTRMLFSALVDADYLDTEAAMRADDEPPRPAG
LPLDAPRLLAALEERLAELACEESLPPTTRALRADLMQACRAAGEATGPLWTLTAPTG
SGKTLALLLFALTRAVCQPPARPIRRIVVVLPFLSLLDQTAEEYRRIVAAAGLDPACL
LEHHSLAGTHAAHSDSAARQLTENWDAPLILTTSVQLLESLHAHTPGACRKLHRLAQS
IILLDEVQTLPAPLAVLTLKTLARLTQEKYGATVVMATATQPAFDLLSEQVREAGNAG
WQPQEMAPPPLRLFERSKRVTPHWHLETPTPWATVQDWLRQEPHSLCIVNLRQDALTL
AQALSDAPGLRHLSTFLCPAHRRAVLEEIRADLQAGRPVRLVSTQCVEAGVDLDFPVV
FRALAPLDAIAQAAGRCNRHGRRPYGKLHVFLPEEDRYPTSAYQRAALLTLSLARENG
GHLNLADPATFRRFYERLWPYTTTNRAELREAVARQDYPTVARLYRLIPQDSVNVVVP
YGEGPALIEEARQQGITRAWMRRAQPYTVTVFRRPDGTLPPHCEPVNLRTRHGAPAQS
ADTWFVCPHPEAYDAQLLGWQPDGGGAEPFVL"
misc_feature complement(226483..227010)
/locus_tag="Dgeo_0239"
/note="CRISPR/Cas system-associated protein Cas3'';
Region: Cas3''_I; cd09641"
/db_xref="CDD:193608"
misc_feature complement(225241..226296)
/locus_tag="Dgeo_0239"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(225298..226296)
/locus_tag="Dgeo_0239"
/note="CRISPR-associated helicase Cas3; Region: cas3_core;
TIGR01587"
/db_xref="CDD:162437"
gene complement(227331..227407)
/locus_tag="Dgeo_R0005"
/note="tRNA-Pro3"
/db_xref="GeneID:4057205"
tRNA complement(227331..227407)
/locus_tag="Dgeo_R0005"
/product="tRNA-Pro"
/db_xref="GeneID:4057205"
gene 227493..228743
/locus_tag="Dgeo_0240"
/db_xref="GeneID:4058525"
CDS 227493..228743
/locus_tag="Dgeo_0240"
/note="PFAM: peptidase M29, aminopeptidase II: (3.2e-196);
KEGG: dra:DR2188 aminopeptidase, ev=0.0, 79% identity"
/codon_start=1
/transl_table=11
/product="peptidase M29, aminopeptidase II"
/protein_id="YP_603712.1"
/db_xref="GI:94984348"
/db_xref="InterPro:IPR000787"
/db_xref="GeneID:4058525"
/translation="MLRPVTNLSFEEKLRNYARLAVRIGLGVREGQRVLVEAPVETAP
LARLLVREAYDAGASFVDVRWDDDDVQLARFTLAPEGTFGQISRWRVDAETETADAGG
AVIAIRATNPNLYAGIDPARVTTHQRALAAYRKPYSLQVMTNRLNWNLISAPVPEWAE
LMFPGLPRDEAVQKQWDAIFAATRADQPDPVAAWQAHLADLKRRRELLTEKQYAALHF
KGGETDLTVGLADDHIWGGGAAQTPSGITFTANIPTEEVWTAPHRERVDGVVVSTKPL
SYNGVLIEGIRIRFEGGRVVEATAQQGQDTLAQLIDTDEGSHRLGEVALVPHSSPISR
SGLFFFNTLYDENAASHIAIGSAYRFNVRGGVDMTLEEFQAKGGNDSLTHVDWMIGSG
EMDVDGITRDGQREPVMRAGEFVI"
misc_feature 227517..228734
/locus_tag="Dgeo_0240"
/note="Thermophilic metalloprotease (M29); Region:
Peptidase_M29; pfam02073"
/db_xref="CDD:145308"
gene complement(228740..229153)
/gene="mgsA"
/locus_tag="Dgeo_0241"
/db_xref="GeneID:4058526"
CDS complement(228740..229153)
/gene="mgsA"
/locus_tag="Dgeo_0241"
/note="catalyzes the formation of methylglyoxal from
glycerone phosphate"
/codon_start=1
/transl_table=11
/product="methylglyoxal synthase"
/protein_id="YP_603713.1"
/db_xref="GI:94984349"
/db_xref="InterPro:IPR004363"
/db_xref="InterPro:IPR011607"
/db_xref="GeneID:4058526"
/translation="MSRPATERRQVALIAHDRKKLELALFALGHREVLGQFHLIATGT
TGSILEQKTGLQVERMLSGPLGGDQQIGARIAEERVLAVFFFRDPLTAQPHEPDVSAL
LRLCDVHDIPLATNPASAEALVLWLAGREEGEGSG"
misc_feature complement(228782..229123)
/gene="mgsA"
/locus_tag="Dgeo_0241"
/note="Methylglyoxal synthase catalyzes the enolization of
dihydroxyacetone phosphate (DHAP) to produce
methylglyoxal. The first part of the catalytic mechanism
is believed to be similar to TIM (triosephosphate
isomerase) in that both enzymes utilize DHAP to...;
Region: MGS; cd01422"
/db_xref="CDD:29634"
misc_feature complement(order(228869..228871,228950..228952,
228965..228970,229019..229024,229028..229030,
229094..229096,229112..229114))
/gene="mgsA"
/locus_tag="Dgeo_0241"
/note="active site"
/db_xref="CDD:29634"
misc_feature complement(order(228788..228790,228797..228808,
228815..228832,228836..228844,228851..228853,
228860..228862,228887..228889,228926..228928,
228944..228949,228959..228964,228968..228973,
229022..229024,229103..229105))
/gene="mgsA"
/locus_tag="Dgeo_0241"
/note="dimer interfaces [polypeptide binding]; other site"
/db_xref="CDD:29634"
misc_feature complement(order(228869..228871,228950..228952))
/gene="mgsA"
/locus_tag="Dgeo_0241"
/note="catalytic residues [active]"
/db_xref="CDD:29634"
gene complement(229150..230112)
/locus_tag="Dgeo_0242"
/db_xref="GeneID:4058527"
CDS complement(229150..230112)
/locus_tag="Dgeo_0242"
/note="PFAM: ROK: (1.7e-54);
KEGG: dra:DR2296 glucokinase, ev=1e-128, 76% identity"
/codon_start=1
/transl_table=11
/product="ROK domain-containing protein"
/protein_id="YP_603714.1"
/db_xref="GI:94984350"
/db_xref="InterPro:IPR000600"
/db_xref="GeneID:4058527"
/translation="MGRGNWKRSREVEEGGRRVTELAQQVSIGIDVGGTKIASGILRG
GELQERHVQPTPSSGWEAVLNAIAARVRELQARHPDVVQVGVGVPGPLNADRTRVKFA
PNIYGFTDVPLVDGLEERLGVRVVLENDAKAAALAEAHLGAARGTGSSVYVTVSTGIG
AGIVLNGRIWRGRHGIAGELGHVTVMPGGPVSGAGLDGALEAVASGTAIARDASYALN
RGVSTAEAFALAAQGQPAARRIVAQALKHIGVALADLQKLLDPEVIVIGGGVASVGEL
FFQGVRAAAEEYAAPFAPVTILPAQLGTDAGVIGAALAAQQEAA"
misc_feature complement(229183..230031)
/locus_tag="Dgeo_0242"
/note="ROK family protein (putative glucokinase); Region:
ROK_glcA_fam; TIGR00744"
/db_xref="CDD:162017"
misc_feature complement(229486..230028)
/locus_tag="Dgeo_0242"
/note="ROK family; Region: ROK; pfam00480"
/db_xref="CDD:201253"
gene complement(230141..230428)
/locus_tag="Dgeo_0243"
/db_xref="GeneID:4058528"
CDS complement(230141..230428)
/locus_tag="Dgeo_0243"
/note="KEGG: dra:DR2297 hypothetical protein, ev=8e-34,
83% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603715.1"
/db_xref="GI:94984351"
/db_xref="GeneID:4058528"
/translation="MSRAYYEDRVLYQGDVWVRLDTLPRLLAEGWRRTLAEGGVVSVI
RTPFQWAMGSPVIEIETGGYMGDVGLYVPEVQLREALALLRGDGEDTTFPG"
gene complement(230425..230916)
/locus_tag="Dgeo_0244"
/db_xref="GeneID:4058529"
CDS complement(230425..230916)
/locus_tag="Dgeo_0244"
/note="PFAM: thioesterase superfamily: (9.4e-12);
KEGG: dra:DR2298 hypothetical protein, ev=4e-40, 58%
identity"
/codon_start=1
/transl_table=11
/product="thioesterase superfamily protein"
/protein_id="YP_603716.1"
/db_xref="GI:94984352"
/db_xref="InterPro:IPR006683"
/db_xref="GeneID:4058529"
/translation="MKAMSQTDPRAAAQALAALDWSRAHRTPIQMRYGDIDAMGHLNN
AVYVQYLETSRVILMRDLGVHDQDDRSVIARLELDYRQEVLWGQAVVVESLVERVGRT
SWTIVSRLSADGVPCAYARTVQVRVDEAHRPEVLPERIRAAFAPLLIASSPVAELQES
LPG"
misc_feature complement(230533..230844)
/locus_tag="Dgeo_0244"
/note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes
the final step in the 4-chlorobenzoate degradation pathway
in which 4-chlorobenzoate is converted to
4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT
forms a homotetramer with four active sites; Region: 4HBT;
cd00586"
/db_xref="CDD:48031"
misc_feature complement(order(230608..230619,230698..230700,
230761..230763))
/locus_tag="Dgeo_0244"
/note="active site"
/db_xref="CDD:48031"
gene 230967..231362
/locus_tag="Dgeo_0245"
/db_xref="GeneID:4058530"
CDS 230967..231362
/locus_tag="Dgeo_0245"
/note="KEGG: dra:DR2295 hypothetical protein, ev=1e-30,
52% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603717.1"
/db_xref="GI:94984353"
/db_xref="GeneID:4058530"
/translation="MLWGMTPPDPPPPLSSQDFRARWRQVQRLPLTLMITCLLAGLGI
VQLTFQLGNLGYRTFTWTRETHAIQARIERLERDVRVLREAEQAANDPAYLETLARCQ
GFVGENEQVIVSTKAPKTPSENCTPVRLP"
gene 231412..231768
/locus_tag="Dgeo_0246"
/db_xref="GeneID:4058531"
CDS 231412..231768
/locus_tag="Dgeo_0246"
/note="PFAM: CutA1 divalent ion tolerance protein:
(2.9e-53);
KEGG: dra:DR2294 periplasmic divalent cation tolerance
protein, ev=1e-40, 78% identity"
/codon_start=1
/transl_table=11
/product="CutA1 divalent ion tolerance protein"
/protein_id="YP_603718.1"
/db_xref="GI:94984354"
/db_xref="InterPro:IPR004323"
/db_xref="GeneID:4058531"
/translation="MSCSALAYAAETMSLVVLVTVPPERAHELARTLVSERLAGCVNV
IGGVHSIYRWEGDIAEDPETLLLIKTTGERYPELEARIQAMHPYEVPEIIALPFDRAL
PAFQSWLLSATTLSGE"
misc_feature 231451..231738
/locus_tag="Dgeo_0246"
/note="CutA1 divalent ion tolerance protein; Region:
CutA1; pfam03091"
/db_xref="CDD:202531"
gene complement(231944..232019)
/locus_tag="Dgeo_R0006"
/note="tRNA-Trp1"
/db_xref="GeneID:4057692"
tRNA complement(231944..232019)
/locus_tag="Dgeo_R0006"
/product="tRNA-Trp"
/db_xref="GeneID:4057692"
gene complement(232111..232332)
/locus_tag="Dgeo_0247"
/db_xref="GeneID:4058532"
CDS complement(232111..232332)
/locus_tag="Dgeo_0247"
/note="KEGG: zmo:ZMO0437 hypothetical protein, ev=6e-11,
40% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603719.1"
/db_xref="GI:94984355"
/db_xref="GeneID:4058532"
/translation="MRVLSLILGILAALGLLLGFLPLFGWLNWLVVLPPAVLGLIFGA
LARDRSAVTLNVVVAALGALRLLLGGGLL"
gene 232403..233104
/locus_tag="Dgeo_0248"
/db_xref="GeneID:4058533"
CDS 232403..233104
/locus_tag="Dgeo_0248"
/note="KEGG: dra:DR0289 endonuclease III, ev=9e-97, 80%
identity;
TIGRFAM: endonuclease III: (1.1e-129);
PFAM: helix-hairpin-helix motif: (0.0012) HhH-GPD:
(5e-22);
SMART: Iron-sulfur cluster loop: (6.4e-07)"
/codon_start=1
/transl_table=11
/product="endonuclease III"
/protein_id="YP_603720.1"
/db_xref="GI:94984356"
/db_xref="InterPro:IPR000445"
/db_xref="InterPro:IPR003265"
/db_xref="InterPro:IPR003651"
/db_xref="InterPro:IPR004035"
/db_xref="InterPro:IPR004036"
/db_xref="InterPro:IPR005759"
/db_xref="GeneID:4058533"
/translation="MGVSRPLGCRLRRVTRPSSPSRLPDGAKARAPLVLSALETLYPD
ARTELEFGNPYELLVATVLSAQATDVSVNAATPALFARYPDAFALAQAAPEDIEPYIR
TIGLYRNKARNLALLARLLVERHGGEVPNDFEAVVALPGVGRKTANVVLSNAYGTPAI
AVDTHVGRLARRLGLSTQTHPDRVERDLQRLFPRERWVFLHHALILHGRRVCVARKPR
CAACLMQAFCPQVGV"
misc_feature 232484..233101
/locus_tag="Dgeo_0248"
/note="Predicted EndoIII-related endonuclease [DNA
replication, recombination, and repair]; Region: Nth;
COG0177"
/db_xref="CDD:30526"
misc_feature 232565..233026
/locus_tag="Dgeo_0248"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(232598..232606,232613..232615,232727..232729)
/locus_tag="Dgeo_0248"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 232817..232840
/locus_tag="Dgeo_0248"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(232847..232849,233003..233005,233015..233017)
/locus_tag="Dgeo_0248"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 232889..232891
/locus_tag="Dgeo_0248"
/note="active site"
/db_xref="CDD:28938"
misc_feature 233033..233089
/locus_tag="Dgeo_0248"
/note="iron-sulpphur binding domain in DNA-(apurinic or
apyrimidinic site) lyase (subfamily of ENDO3); Region:
FES; smart00525"
/db_xref="CDD:197771"
gene 233172..234458
/locus_tag="Dgeo_0249"
/db_xref="GeneID:4058534"
CDS 233172..234458
/locus_tag="Dgeo_0249"
/note="PFAM: major facilitator superfamily MFS_1:
(2.5e-22);
KEGG: dra:DR0290 hypothetical protein, ev=1e-175, 78%
identity"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily transporter"
/protein_id="YP_603721.1"
/db_xref="GI:94984357"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:4058534"
/translation="MALPSHSQSCQAEVPMTWRFSRQVWLYLTSAFTFGLSQAFAALF
LNFYLRALGLGAEWQGLVNALPALTLACLSLPAVALARRISNARTLQLGSVLSLIGAV
LLSLSAGPLAAIVGALVQGAGAALLSVAGAPFMANNSDERSRVTLFSVQSALMTGAGF
LGNLLGGRVPELYAAATGAAPDGLAALRAALLVSAAFQLVGLLPVLFLRPSGRPRPQG
RSFAVRDKGTMTRLVAPNVLVGLGAGATIPFLNVFIEGKFHVDYASLGTLFAWTSLAT
AATVLVQPLLVRRLGQLPAVLVVQAASLPFLAVLGFAPQLWMVSAALFTRGALMNAAG
PVYSAYAMSALPDEDRAMYSAVNTIAWDLCWAISSLLSGVVRGLLPFDAAFRVLFAWT
ILMYAASVLVIFLGLYRRVYRRERRLAPTVAAGPPS"
misc_feature 233241..234272
/locus_tag="Dgeo_0249"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(233283..233285,233292..233300,233304..233309,
233358..233360,233367..233372,233379..233381,
233391..233396,233400..233405,233541..233546,
233553..233558,233565..233570,233577..233579,
233613..233618,233625..233630,233646..233648,
233889..233891,233898..233903,233910..233915,
233922..233924,233964..233966,233976..233978,
233988..233990,233997..233999,234009..234011,
234150..234152,234159..234164,234171..234173,
234183..234188,234195..234197,234228..234233,
234240..234245,234252..234257,234264..234266)
/locus_tag="Dgeo_0249"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 234493..235209
/locus_tag="Dgeo_0250"
/db_xref="GeneID:4058535"
CDS 234493..235209
/locus_tag="Dgeo_0250"
/note="PFAM: protein of unknown function DUF164:
(1.6e-13);
KEGG: dra:DR0291 hypothetical protein, ev=9e-93, 71%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603722.1"
/db_xref="GI:94984358"
/db_xref="InterPro:IPR003743"
/db_xref="GeneID:4058535"
/translation="MSDTGPLQSLSRVQELDLELDRLRAEEASIPDALREARAQQERL
NNDLEDTEITLEGVEKQIRGLEQDLAGTREQITRAREEQDRNAFDARAQSQYGSRIQM
LSERAEEMEEDLAPLHEQRQALTRRAADLRAEHRTLRPRLEELEAQDEARVQGLRAQG
EGLRQERAQLVSGIDARTVKEYDLIRKAKKGLGLVEIRGGRCTGCNVVLPVNVQQKAA
QGKLPPVKCPSCGRFLIKRG"
misc_feature 234508..235200
/locus_tag="Dgeo_0250"
/note="Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only]; Region: COG1579"
/db_xref="CDD:31767"
misc_feature 235024..235194
/locus_tag="Dgeo_0250"
/note="Putative zinc ribbon domain; Region: DUF164;
pfam02591"
/db_xref="CDD:202300"
gene 235507..238539
/locus_tag="Dgeo_0251"
/db_xref="GeneID:4058536"
CDS 235507..238539
/locus_tag="Dgeo_0251"
/note="TIGRFAM: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent: (1.5e-186);
PFAM: ribonucleotide reductase large subunit: (1.6e-11)
Ribonucleotide reductase large subunit, N terminal:
(1e-15);
KEGG: dra:DR2374 ribonucleoside-diphosphate
reductase-related protein, ev=0.0, 79% identity"
/codon_start=1
/transl_table=11
/product="ribonucleoside-diphosphate reductase"
/protein_id="YP_603723.1"
/db_xref="GI:94984359"
/db_xref="InterPro:IPR000788"
/db_xref="InterPro:IPR013344"
/db_xref="InterPro:IPR013509"
/db_xref="GeneID:4058536"
/translation="MTTTSDRTLSNFDENAQHIARRQYLQPGDGDILGMFRRIADWVA
AAEAPEARERWAQKYYDLMAQKRFCPGGRVLAGAGTQHGNVLNCFVQGATEHAPESFD
GIMEVAKKLALVTKVGGGNGVNLDVYTPRAQGSRPDAGVRGWVYMSAAHPDVGDFIEG
LMRPPTQPDGDKQPVAVRNWTRVVYGEALPADLVARARQNGVQIVRALPGGVQAVPDD
MGGIIDAARAVAESAKVGVEPRIDLSQMRPEGAPIKGSGGTSSGPVSFLMEIFDNFLE
WANRGGETSGPINTLRYVYAPVLRVVRQGGTRRGAGMATIAIEHPDVLDFLTAKDLDR
EAAEGDISTFNISILVSEQFWQALEGDALWHVDVQEVPGKYYLAPQSGPYDGHLPTLP
ERAEDGARGVPLYRGAPRGRSQPADARPGVPAKWLWDQIAEHAWATGEPGLIFVDRVN
EHSALKNLGKRYEIRSTNPCGEIPLTVGEPCDLGAINLAAYVQNSRFDFAAFRADVRT
CVRFLDDVLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKLGLRYDSEAGRAAIAE
IMTALREEAVAESERLGQERGVYPVYERNAQKIPHSPRRNVAVLTVAPTGTTSMLMGV
SSGIEPVFSPFIWRKIGAEYRALLHPLFMELLNQYPPAANMDDGQGGWNWDRVTEAVS
ENHGSVVGLAFIPEALQQVFVCAHDIKPLDHVRMQGVVQQAFDAGGQHAANSLSKTIN
LPNSATVADVRAAYAEAYRTGCKGITVYRDGSRQFQVLSTSKKKEKKAEAEPVQAATE
VLGEGAPAVSRPSESAATPSTPRANPTPQSVTSPVYERPTRLQGVTDMVKLTDPTSGH
RRSFLVTVNHLGGKPVEVIVISGRAGDEANADSEALGRVVSIALQHGVPAQAIIKTLR
GLNGGLYGSYNGRLVGSKADLIAVALETFQKELEAAALPPLAGGSVDLPAPPAPSGVS
VEGMDGIGRERCPVCEEKAVIREEGCLKCQACGYSKCG"
misc_feature 235537..235755
/locus_tag="Dgeo_0251"
/note="Ribonucleotide reductase, all-alpha domain; Region:
Ribonuc_red_lgN; pfam00317"
/db_xref="CDD:201150"
misc_feature 235678..>236001
/locus_tag="Dgeo_0251"
/note="Ribonucleotide reductase and Pyruvate formate
lyase; Region: RNR_PFL; cl09939"
/db_xref="CDD:186877"
misc_feature 236140..237408
/locus_tag="Dgeo_0251"
/note="Class II ribonucleotide reductase, dimeric form;
Region: RNR_II_dimer; cd02888"
/db_xref="CDD:153089"
misc_feature order(236155..236157,236161..236163,236170..236172,
236206..236208,236245..236247,236263..236265,
236269..236271,236284..236289,236302..236304,
236407..236415)
/locus_tag="Dgeo_0251"
/note="effector binding site; other site"
/db_xref="CDD:153089"
misc_feature order(236161..236166,236173..236178,236182..236187,
236194..236199,236206..236208,236260..236262,
236269..236280,236287..236289,236302..236304,
236314..236316,236323..236325,236398..236400,
236407..236409,236413..236421,236425..236427)
/locus_tag="Dgeo_0251"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153089"
misc_feature order(236212..236220,236428..236433,236437..236439,
236908..236916,236920..236922,236953..236955,
237343..237360)
/locus_tag="Dgeo_0251"
/note="active site"
/db_xref="CDD:153089"
misc_feature <237625..237819
/locus_tag="Dgeo_0251"
/note="Ribonucleotide reductase and Pyruvate formate
lyase; Region: RNR_PFL; cl09939"
/db_xref="CDD:186877"
misc_feature 238081..238335
/locus_tag="Dgeo_0251"
/note="TSCPD domain; Region: TSCPD; pfam12637"
/db_xref="CDD:193115"
gene 238873..239172
/gene="rpoZ"
/locus_tag="Dgeo_0252"
/db_xref="GeneID:4058537"
CDS 238873..239172
/gene="rpoZ"
/locus_tag="Dgeo_0252"
/note="promotes RNA polymerase assembly or stability;
latches the N- and C-terminal regions of the beta' subunit
thereby facilitating its interaction with the beta and
alpha subunits"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit omega"
/protein_id="YP_603724.1"
/db_xref="GI:94984360"
/db_xref="InterPro:IPR003716"
/db_xref="InterPro:IPR006110"
/db_xref="GeneID:4058537"
/translation="MAEKDIDKLLSLTDSKYRLSVVIAKRALQLRSGAPSVLPVEQRV
RTRNLVTQAMRELATGKLTVGTGLMDENRFHQDYVRQKQAQLQAQLNAERERERD"
misc_feature 238873..239091
/gene="rpoZ"
/locus_tag="Dgeo_0252"
/note="DNA-directed RNA polymerase subunit omega;
Reviewed; Region: rpoZ; PRK00392"
/db_xref="CDD:178998"
gene 239253..240503
/locus_tag="Dgeo_0253"
/db_xref="GeneID:4058538"
CDS 239253..240503
/locus_tag="Dgeo_0253"
/note="PFAM: sodium/hydrogen exchanger: (9.9e-49);
KEGG: dra:DR2395 Na+/H+ antiporter, , ev=1e-177, 78%
identity"
/codon_start=1
/transl_table=11
/product="sodium/hydrogen exchanger"
/protein_id="YP_603725.1"
/db_xref="GI:94984361"
/db_xref="InterPro:IPR006153"
/db_xref="GeneID:4058538"
/translation="MLTAFAVLLCVTAVLAYLNERFFHFPTTVGVTLAGAVASIGLIG
LDALGVPGLREWATGVLQTLNFTEFVLNGILSLLLFAGALSLNAGQMLRQRVSILTLA
ILSTLLSTFLIGFAAYFVFGLVGLHVPLMWSLLFGALISPTDPVAVLDLLKRARVPAQ
IETLIAGESLFNDGVGVVIFLVLAGLAGVGGNHTAPDALGALLLFVREALGGMLFGAA
LGAVGYAMLRSIEQHAVEVLITLALVVGGYVAAAALGLSGPLAMVVAGLMISAVKERA
FSRETCEHVEGFWETVDQVLNILLFAFIGLDVLLTHTTGSQILASVLLIAVALAARWL
SVALPFLLVRAREGYGAYTVRLLTWGGLRGGIAISLVLGLPDSPYRTHLVTATYAIVL
FTIAVQGLTIMPLVHKASAAVRER"
misc_feature 239280..240500
/locus_tag="Dgeo_0253"
/note="NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism]; Region: NhaP; COG0025"
/db_xref="CDD:30375"
gene complement(240504..242318)
/locus_tag="Dgeo_0254"
/db_xref="GeneID:4058539"
CDS complement(240504..242318)
/locus_tag="Dgeo_0254"
/note="PFAM: cell wall hydrolase/autolysin: (2.2e-50);
KEGG: dra:DR2394 N-acetylmuramoyl-L-alanine amidase,
ev=0.0, 56% identity"
/codon_start=1
/transl_table=11
/product="cell wall hydrolase/autolysin"
/protein_id="YP_603726.1"
/db_xref="GI:94984362"
/db_xref="InterPro:IPR002508"
/db_xref="GeneID:4058539"
/translation="MQPRAILLSSFLSCGLVGSWAEAQTDPFQRAAPSQVTPSLRGAA
ATPAAGSRNSNASVTFGNPRTSSDGSQTRVVFDLAPGVSYNLTPTFGGLRLDVRGAQV
LPAVQSRLGASVTEYRASGNQITLVTPFPLSLTDGWRASEATVASGTRVLILEFGPTL
SGGASGALRALVRTMPTAPTSTVNLALSAVPATSPVPSAPSSSPSSASISTQTPLADQ
LPPGDTVPRAPQGSLPAPAPALPGADPSKPSALADRTPGTPQPGASLTPPRVGKNPGM
TRVVLDLPPGTAYRLVPGSVGLRVELSGVSASALAGQNISPEVRAWRYEPTENGVTVT
LLTAAPLTERSGWRAQLVPPLEGSDRSRLAIDFSPALADLTPLTPRERTLAAVPPINA
LPGAALLAFGASLMPPRVVIDPGHGGHDPGAVGAVVEKEVTLDVALRVRDLLRPAGVD
VVLTRDSDRELSPVKATDLNMRAAMGTPGTQLFVSIHVNAMPPQNALRGYGVETWWNP
NHPLSSTLAALIQKNVVAITGAFSQGLHNTRSLAVLRGSRIPAALVEIGYTSHPVDGL
NLKDNNYLDRVALGIAQGIREALVTGISANGALANAAK"
misc_feature complement(240543..241103)
/locus_tag="Dgeo_0254"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:31201"
misc_feature complement(240564..241094)
/locus_tag="Dgeo_0254"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature complement(order(240654..240656,240858..240860,
241032..241034,241071..241073))
/locus_tag="Dgeo_0254"
/note="active site"
/db_xref="CDD:119407"
misc_feature complement(order(240858..240860,241032..241034,
241071..241073))
/locus_tag="Dgeo_0254"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
gene 242553..246521
/locus_tag="Dgeo_0255"
/db_xref="GeneID:4058540"
CDS 242553..246521
/locus_tag="Dgeo_0255"
/note="KEGG: dra:DR0507 DNA polymerase III alpha subunit,
ev=0.0, 85% identity;
TIGRFAM: DNA polymerase III, alpha subunit: (0);
PFAM: PHP-like: (3e-72) nucleic acid binding, OB-fold,
tRNA/helicase-type: (8.5e-09);
SMART: Phosphoesterase PHP-like: (5.5e-27)"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit alpha"
/protein_id="YP_603727.1"
/db_xref="GI:94984363"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004805"
/db_xref="InterPro:IPR011708"
/db_xref="GeneID:4058540"
/translation="MTAAEPTAPHIHLPDGSCCGPKKFAHLHQHTQYSLLDGAAKLKD
LLKWVKEVTPHDPACAMTDHGNMHGAVHFYNYASQLGVKPILGYEAYVVPGFGTRRDK
KPGVSGEKGIFHLTLLARDFTGYQNLCRLSSRGYTEGYYYKPRIDHELLQEHHQGVIA
FSGCLGSEVQQLLLQGREDEAKARLLWYRDLFGENYFIEIQDHGLPEQKRNNPILRAW
AQELGIGMVATNDGHYVKKTDATAHEALLAIQTKATLADENRFKFPCDEFYVKGLEEM
QKALPVAEWGEEPFDNTAHIASICNVDLPVGKKRVYQMPALPIPEGRTMAEELRVQTY
RGAMKRYPAHVTEGLLRDYALRSLEALGPEDGARVLVRVGGADPATCDLETLFTLLAF
MGSEWEARGKAAGEKYTPYPALEAMEAAAAAGALPPYAHEDCRRARQGDSDTAIELDP
EADDSETTRSHHQHALTVLRRAEYELSVINNMGFPDYFLIVADYIGWAKDQGISVGPG
RGSGAGSLVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVIGYVQ
GKYGDDKVAQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAR
EAVPDIQQMLAEDAQLREAYEFAQKLEGLTRHASVHAAGVVIGRSQLTDLVPVMRDTS
GEGMVCQYDMKAVEDIGLIKMDFLGLRTLSFLDEAKRIMRESKGVEIDFDAIPFDDEK
TFELLSRGDTKGVFQLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRH
HGAEPVTYDEFPHSAKWLEKILAETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMG
KKDAEEMKRQRQLFVEGAEKNGVPKEEGNRLFDLLDAFANYGFNKSHSAAYGVITYQT
AWLKANYPVEFMAALLTVERRDSDKVAEYVSDARKMNVRVLPPDINRSSADFAVHGEE
ILFGLYAIKGLGEGAVQKILEEREKNGPFRSLADFCSRLGHKVCNRKAMESLIKSGAF
DGFGERHQLMESLEEAMAWAQGAAALAQSGMDALFGMAETAPEPKLKAGVAPYTDLQR
LAIEKEALGLYISGHPLEQHEGLREAASCRISDLDTWFQAQNVAPGKRVKAVLAGMIE
NVVKKPTKSGGMMARFILADESGQTELVAFSRAYDRIQEKLVNDTPALVIVELESEDG
GLRAIAEEIVSVEQLAEVPKVMYVTIDLETATPDALGEFQSVLDEHAGSMPTYLRLET
PEQFVLYQLEHKIGSPEAIRVLNSTFPWANAYLAYDQSTILGRFAPKPPAWMGKGRAM
QA"
misc_feature 242625..243188
/locus_tag="Dgeo_0255"
/note="PHP domain; Region: PHP; pfam02811"
/db_xref="CDD:202407"
misc_feature 243954..245186
/locus_tag="Dgeo_0255"
/note="Bacterial DNA polymerase III alpha subunit; Region:
DNA_pol3_alpha; pfam07733"
/db_xref="CDD:203746"
misc_feature 245247..246308
/locus_tag="Dgeo_0255"
/note="DNA polymerase III subunit alpha; Reviewed; Region:
PRK07373"
/db_xref="CDD:180950"
misc_feature 245970..246221
/locus_tag="Dgeo_0255"
/note="DnaE_OBF: A subfamily of OB folds corresponding to
the C-terminal OB-fold nucleic acid binding domain of
Thermus aquaticus and Escherichia coli type C replicative
DNA polymerase III alpha subunit (DnaE). The DNA
polymerase holoenzyme of E. coli contains...; Region:
DnaE_OBF; cd04485"
/db_xref="CDD:72957"
misc_feature order(245970..245972,246126..246128,246132..246134,
246138..246140,246192..246194)
/locus_tag="Dgeo_0255"
/note="generic binding surface II; other site"
/db_xref="CDD:72957"
misc_feature order(245985..245993,246033..246044,246048..246050,
246066..246074,246078..246080,246123..246125,
246144..246152,246171..246179)
/locus_tag="Dgeo_0255"
/note="generic binding surface I; other site"
/db_xref="CDD:72957"
gene complement(246882..247961)
/locus_tag="Dgeo_0256"
/db_xref="GeneID:4058541"
CDS complement(246882..247961)
/locus_tag="Dgeo_0256"
/note="KEGG: dra:DR0442 twitching motility protein,
ev=1e-156, 76% identity;
TIGRFAM: twitching motility protein: (5.4e-221);
PFAM: type II secretion system protein E: (7e-28);
SMART: ATPase: (2.2e-08)"
/codon_start=1
/transl_table=11
/product="twitching motility protein"
/protein_id="YP_603728.1"
/db_xref="GI:94984364"
/db_xref="InterPro:IPR001482"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR006321"
/db_xref="GeneID:4058541"
/translation="MSVLQALLGVMVKSGASDIHLRSGSAPAARINGNIVRFGEDRLS
PDHVAGFAREMMSRPGLWEEFITRRDADFAYGVPGVARFRVNAYYQRGTVGLIMRVIE
EKPIPSFAELGLPVATFEALAAQERGLVLVTGPTGSGKTTTLASILDHINATQPVNIV
TLEDPIEILHRDKQALVSQRELGTDTLSFAAGLRAAMRQDPDVILIGEMRDKETVEAA
LSAAQTGHLVFSTLHTLDAIRTVNRIIDFFAPHERDQIRLALSESLVGVVSQRLLPRQ
GGGRVLGMEILLGTPTVRECIKDANRTEEIKQALQEGSLRGMHTFDQHLVQLVQDHLI
TEEDALQAATSPHELKLALLSRQFA"
misc_feature complement(246918..247955)
/locus_tag="Dgeo_0256"
/note="pilus retraction protein PilT; Region: pilT_fam;
TIGR01420"
/db_xref="CDD:162351"
misc_feature complement(246987..247583)
/locus_tag="Dgeo_0256"
/note="Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type IV
pili, likely by pili disassembly. This retraction provides
the force required for travel of bacteria in low water
environments by a mechanism...; Region: PilT; cd01131"
/db_xref="CDD:29997"
misc_feature complement(247539..247562)
/locus_tag="Dgeo_0256"
/note="Walker A motif; other site"
/db_xref="CDD:29997"
misc_feature complement(order(247338..247340,247536..247547,
247551..247553))
/locus_tag="Dgeo_0256"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29997"
misc_feature complement(247338..247355)
/locus_tag="Dgeo_0256"
/note="Walker B motif; other site"
/db_xref="CDD:29997"
gene complement(248070..248672)
/locus_tag="Dgeo_0257"
/db_xref="GeneID:4058542"
CDS complement(248070..248672)
/locus_tag="Dgeo_0257"
/note="KEGG: dra:DR0582 hypothetical protein, ev=4e-68,
70% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603729.1"
/db_xref="GI:94984365"
/db_xref="GeneID:4058542"
/translation="MTKRSKVFVPAVVTVATVGVAAGAAYVARHRKDDVKEFFVAQVL
ERPAGRMSYSDLAQGLERGGVFLAQRAARAANTDANRAILTHIIGIERWGQNRLRVAL
GQRPFERDEHHPYKPGAGATLRELQDLLSQTRAQTVDLARQLHAQPPQDDLTIEHNGL
GPLTPKGWLRYLTQHADLESRKLRGAKEYQALGEERLASQ"
misc_feature complement(248148..>248417)
/locus_tag="Dgeo_0257"
/note="DinB superfamily; Region: DinB_2; pfam12867"
/db_xref="CDD:205116"
gene complement(248706..249626)
/locus_tag="Dgeo_0258"
/db_xref="GeneID:4058543"
CDS complement(248706..249626)
/locus_tag="Dgeo_0258"
/note="KEGG: dra:DR0580 acetyltransferase, , ev=1e-118,
84% identity"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_603730.1"
/db_xref="GI:94984366"
/db_xref="GeneID:4058543"
/translation="MATGATRATVAGVTWLKPVSINADAQGAYHEFLRDLEARLLDPQ
TDRYALAREVLAQAMYGREYGQLLADAPLAALNLDAHNVTFEAEYYMATDPEKFAPVK
PLLWLWKNLDLTPIGQNPVLGIPIRRVLAERIFKRVGRNFKCWQNVEFSVGYNMEVGN
DVVVHRYVLLDDIGGIELQDNASVSDYVNIYSHTHSVLDGPDVTLRRTVIGRGARITY
HSTVLAGSVVSDDAMLATHALLRGDIPPHGIAMGVPAKVTRYKRREPWAYSVDSRTYP
HDPGRKANPAFPDPTPNQTRKPTLEETGGS"
misc_feature complement(248841..249386)
/locus_tag="Dgeo_0258"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:30459"
misc_feature complement(248856..249164)
/locus_tag="Dgeo_0258"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature complement(order(248868..248870,248916..248918,
248973..248975,248982..248984,248988..248990,
249036..249044,249060..249062,249078..249080,
249084..249086,249114..249116,249138..249140,
249144..249146))
/locus_tag="Dgeo_0258"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature complement(order(248865..248867,248871..248876,
248901..248906,248919..248924,248958..248960,
248973..248978,248982..248984,249036..249038,
249042..249044,249132..249134,249138..249140))
/locus_tag="Dgeo_0258"
/note="active site"
/db_xref="CDD:100053"
misc_feature complement(order(249042..249044,249132..249134,
249138..249140))
/locus_tag="Dgeo_0258"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature complement(order(248865..248867,248871..248876,
248880..248882,248901..248906,248919..248924,
248928..248930,248958..248960,248973..248978,
248982..248984,249036..249038,249042..249044))
/locus_tag="Dgeo_0258"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
gene complement(249780..250211)
/locus_tag="Dgeo_0259"
/db_xref="GeneID:4058544"
CDS complement(249780..250211)
/locus_tag="Dgeo_0259"
/note="PFAM: isochorismatase hydrolase: (0.0006);
KEGG: dra:DR0947 hypothetical protein, ev=3e-29, 60%
identity"
/codon_start=1
/transl_table=11
/product="isochorismatase hydrolase"
/protein_id="YP_603731.1"
/db_xref="GI:94984367"
/db_xref="InterPro:IPR000868"
/db_xref="GeneID:4058544"
/translation="MSPTTAALVLLTAQRHHLEALPDERVVARAWQARVEAARTAGHL
IVHVQWEGAPGTPGETFSRGWVLHPDFRAEAPDLLLRATEPDAFSHSGLDAALRERGV
RELHLLALPGVQVLAATAATARALGYRVEVLEDRPAPLGTP"
misc_feature complement(249807..250193)
/locus_tag="Dgeo_0259"
/note="Cysteine hydrolases; This family contains
amidohydrolases, like CSHase (N-carbamoylsarcosine
amidohydrolase), involved in creatine metabolism and
nicotinamidase, converting nicotinamide to nicotinic acid
and ammonia in the pyridine nucleotide cycle. It...;
Region: cysteine_hydrolases; cl00220"
/db_xref="CDD:185838"
misc_feature complement(order(249867..249869,249966..249968,
250176..250178))
/locus_tag="Dgeo_0259"
/note="catalytic triad [active]"
/db_xref="CDD:29548"
misc_feature complement(249879..249884)
/locus_tag="Dgeo_0259"
/note="conserved cis-peptide bond; other site"
/db_xref="CDD:29548"
gene complement(250238..251023)
/locus_tag="Dgeo_0260"
/db_xref="GeneID:4058545"
CDS complement(250238..251023)
/locus_tag="Dgeo_0260"
/note="PFAM: short-chain dehydrogenase/reductase SDR:
(1.1e-05);
KEGG: dra:DR1967 enoyl-acyl carrier protein reductase,
ev=1e-112, 78% identity"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_603732.1"
/db_xref="GI:94984368"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4058545"
/translation="MSVTVDLSDKTALVMGVANARSLGWAIAEQLLAAGCRVGFSYQG
ERLRPELEKLTAGRSGTWIQQADATREDDLTALFARVRDEFGHLDYLVHSIAFAPRSA
MEGRFLDTTPEDWNTALNVSAYTLVSTARHAEPLLREGGAVVSLTYHASQQVVPKYNV
MGVAKAALEAATRYLASELGARGVRVNTISAGPMRTIAARSIPGFGTMYEKSAQNAPL
GRNATPEEVGKLALFLLSDLGSGVTGQTVYVDAGASIMSMKVE"
misc_feature complement(250247..251014)
/locus_tag="Dgeo_0260"
/note="Enoyl-[acyl-carrier-protein]; Region: FabI;
COG0623"
/db_xref="CDD:30968"
misc_feature complement(250256..250996)
/locus_tag="Dgeo_0260"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature complement(order(250427..250438,250442..250453,
250529..250531,250550..250552,250580..250588,
250661..250663,250733..250744,250820..250828,
250895..250897,250955..250960,250970..250978))
/locus_tag="Dgeo_0260"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature complement(order(250256..250264,250268..250306,
250310..250312,250325..250327,250334..250339,
250346..250348,250364..250375,250391..250393,
250400..250402,250481..250486,250490..250507,
250511..250516,250523..250528,250535..250540,
250547..250552,250556..250567,250571..250576,
250622..250624,250631..250633,250643..250645,
250652..250657,250664..250669,250676..250681,
250688..250708,250802..250804,250811..250822,
250925..250927))
/locus_tag="Dgeo_0260"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(250487..250495,250499..250507,
250511..250516,250523..250528,250535..250540,
250547..250552,250559..250567,250571..250576,
250622..250624,250631..250636,250643..250645,
250652..250657,250664..250669,250676..250681,
250688..250708,250811..250822))
/locus_tag="Dgeo_0260"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(250409..250411,250418..250420,
250427..250432,250529..250531,250541..250543,
250550..250552,250580..250582,250730..250732,
250736..250738))
/locus_tag="Dgeo_0260"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(250529..250531,250541..250543,
250580..250582,250658..250660))
/locus_tag="Dgeo_0260"
/note="active site"
/db_xref="CDD:187630"
gene 251130..251897
/locus_tag="Dgeo_0261"
/db_xref="GeneID:4058546"
CDS 251130..251897
/locus_tag="Dgeo_0261"
/note="PFAM: protein of unknown function DUF152: (2e-40);
KEGG: dra:DR1966 conserved hypothetical protein, ev=6e-88,
69% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603733.1"
/db_xref="GI:94984369"
/db_xref="InterPro:IPR003730"
/db_xref="GeneID:4058546"
/translation="MPSHTDPLMLLRSPVLPVPHAFTTRVGGVSQGPYSAQHGAVLNL
DDREDDPQAVAENRRRVAAALGFDPARIARLHQVHGTDVVVARPGVQEGDALVSTQAG
LLLAIGTADCYPVLLADVEAGVVGAAHAGWRGTLGRIAARVVEALVERGASPNRICAA
VGPGICGERYPVGADVAQQFQEAGLGEFVLERATGPHLDLAGANRAVLLAAGLPAENI
WLSGRCSTEPDFYSYRRDAGRTGRMWAVIGLPGGGAA"
misc_feature 251154..251879
/locus_tag="Dgeo_0261"
/note="Multicopper polyphenol oxidase (laccase) [Secondary
metabolites biosynthesis, transport and catabolism];
Region: yfiH; COG1496"
/db_xref="CDD:31685"
misc_feature 251193..251876
/locus_tag="Dgeo_0261"
/note="Multi-copper polyphenol oxidoreductase laccase;
Region: Cu-oxidase_4; pfam02578"
/db_xref="CDD:202292"
gene 251894..252394
/locus_tag="Dgeo_0262"
/db_xref="GeneID:4058547"
CDS 251894..252394
/locus_tag="Dgeo_0262"
/note="TIGRFAM: HAD-superfamily hydrolase subfamily IIIA:
(1.3e-33) HAD-superfamily phosphatase subfamily IIIA:
(1e-40);
KEGG: dra:DR1965 hypothetical protein, ev=2e-71, 78%
identity"
/codon_start=1
/transl_table=11
/product="HAD family phosphatase"
/protein_id="YP_603734.1"
/db_xref="GI:94984370"
/db_xref="InterPro:IPR006549"
/db_xref="InterPro:IPR010021"
/db_xref="GeneID:4058547"
/translation="MSLLRPRDVLDHVHDITPEFLAGRGLRGLLLDLDNTLIPYGSYE
ERADVMGWAAELRRAGIRLYLLSNATGQRARFWVEKLGFEGVGMAGKPNPRAFRRALE
HLGLPARQVGMVGDQLFTDVLGGNLAGMHTILVRPLAVNALPHTRVARKLERAVLKRY
GHDWRP"
misc_feature 251894..252391
/locus_tag="Dgeo_0262"
/note="Predicted hydrolase of the HAD superfamily [General
function prediction only]; Region: COG2179"
/db_xref="CDD:32362"
misc_feature <252053..252298
/locus_tag="Dgeo_0262"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 252092..252094
/locus_tag="Dgeo_0262"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 252422..255097
/locus_tag="Dgeo_0263"
/db_xref="GeneID:4058548"
CDS 252422..255097
/locus_tag="Dgeo_0263"
/note="PFAM: type II secretion system protein E:
(2.1e-107) General secretory system II, protein E-like:
(6e-40);
KEGG: dra:DR1964 general secretion pathway protein E,
ev=0.0, 78% identity"
/codon_start=1
/transl_table=11
/product="type II secretion system protein E"
/protein_id="YP_603735.1"
/db_xref="GI:94984371"
/db_xref="InterPro:IPR001482"
/db_xref="InterPro:IPR007831"
/db_xref="GeneID:4058548"
/translation="MALSIADRRLGAILLEQGYVTDTDLQKALVRHAEVGGRLADILI
ESGQVGEKRIARAIEEALGIPLVNLLVVTPDAAALAAIRAETAKQMQAFPFALEGQTL
RVALVDPLSSVAIEALEDDSGLNIEPYQALRDQVLWSIATYYPELGLMPVLPEGAAGS
SESGGKLGQRLISRGLINEAQLQVALDVQQQTGEALGHILVTQGLLSEDQLYEVLAEQ
AGAVYLRNPRDFQPGEEVLGSLLRADALRLSAVPVDETAQGVTVVVSDPRRRDELEAL
IGRPVQLVLARPGDVEALIERYYPQRGRLGEQMVQQGSLSRAQLREALQVQARGGKVK
PLGEVIVELGFARAEEIDAALQKQNAGGGRLEDTLVQSGKLSPEMLARSLAAQLGYEY
LDPVQNPPDPQVALMIPEATARRYTVVPVRLQGEALVVAMKDPRNVFALDDLKLITGR
EIVPAVMSEKDIVRLIERYFGNQDMANLNQRLAAESKTREARKEADLDFSAGLDDNAV
VRVVDNLIREAALQEASDIHIEPTESAVRVRYRVDGALREQPELPKGSAQSILARIKI
MGGLDIAERRVPQDGRIRFRKGSIDLDLRLSTLPTVYGEKAVMRLLQKAENIPEVEQL
GFSEHNFGRYLEVIEKPNGIFLITGPTGSGKSFTSFSTLKRIARPEKNTTTIEDPIEY
EIPGIVQSQVNVAAGMTFARALRAFLRQDPDIIFVGEIRDTETAKIATEAALTGHLVL
ATLHTNDAPGAITRLSEMGVEHFNISASVVGVLAQRLVRRVCTECKQPTNADPEVLRR
LGLSEAEVRGATLMRGSGCPRCGGTGYKGRMGIHELMVIDDPLRRAIAAGRTATELRD
VAMQESGMRTLRQDGIEKALAGLTTLEEVLAVTSS"
misc_feature 252548..252859
/locus_tag="Dgeo_0263"
/note="Type II secretion system (T2SS), protein E,
N-terminal domain; Region: T2SE_Nter; pfam05157"
/db_xref="CDD:203183"
misc_feature 253019..253336
/locus_tag="Dgeo_0263"
/note="Type II secretion system (T2SS), protein E,
N-terminal domain; Region: T2SE_Nter; pfam05157"
/db_xref="CDD:203183"
misc_feature 253427..255091
/locus_tag="Dgeo_0263"
/note="type IV-A pilus assembly ATPase PilB; Region:
type_IV_pilB; TIGR02538"
/db_xref="CDD:162908"
misc_feature 253526..253843
/locus_tag="Dgeo_0263"
/note="Type II secretion system (T2SS), protein E,
N-terminal domain; Region: T2SE_Nter; pfam05157"
/db_xref="CDD:203183"
misc_feature 254108..254905
/locus_tag="Dgeo_0263"
/note="PulE/GspE The type II secretory pathway is the main
terminal branch of the general secretory pathway (GSP).
It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which...; Region:
PulE-GspE; cd01129"
/db_xref="CDD:29995"
misc_feature 254366..254389
/locus_tag="Dgeo_0263"
/note="Walker A motif; other site"
/db_xref="CDD:29995"
misc_feature order(254369..254371,254381..254389,254444..254446,
254450..254455,254573..254578)
/locus_tag="Dgeo_0263"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29995"
misc_feature 254561..254578
/locus_tag="Dgeo_0263"
/note="Walker B motif; other site"
/db_xref="CDD:29995"
gene 255238..256449
/locus_tag="Dgeo_0264"
/db_xref="GeneID:4058549"
CDS 255238..256449
/locus_tag="Dgeo_0264"
/note="KEGG: dra:DR1963 twitching mobility protein,
ev=1e-176, 78% identity;
TIGRFAM: twitching motility protein: (1.8e-226);
PFAM: type II secretion system protein E: (2.4e-23);
SMART: ATPase: (3.3e-07)"
/codon_start=1
/transl_table=11
/product="twitching motility protein"
/protein_id="YP_603736.1"
/db_xref="GI:94984372"
/db_xref="InterPro:IPR001482"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR006321"
/db_xref="GeneID:4058549"
/translation="MSHVPADITDILRFAAEKGASDVILTAGLPPQFKLSGVYETHGF
APLAATDTRKLMYSMMNERQQRIFEEKRELDFSFALGERARFRVNAFMQRGFVGGVLR
LIPTQIRSAQEMGLPPHVIEIANAPRGLVLVTGPTGSGKSTTLAAMIDYINSTKKLHI
VTIEDPIEFMHGHKQSIVNQREVGSDTLSFQDALRAALRQAPDVILVGEMRDYETIRA
AVTAAETGHLVMGTLHTNSAPESIDRIVDVFPEEQQGQIRVQLANNLVAVMTQQLLPR
LDGLGRVLAYELLIANPAVRALIREGKTYQIVSTMQTGAREGMVTMDAYLANLYRRRI
ISYDTGVARAVDPKEFARLANDPNTGVGGATYTPPAGSTSPTLGSGTNVGRTATPSTP
PAGGNPPFGRR"
misc_feature 255256..256284
/locus_tag="Dgeo_0264"
/note="pilus retraction protein PilT; Region: pilT_fam;
TIGR01420"
/db_xref="CDD:162351"
misc_feature 255619..256215
/locus_tag="Dgeo_0264"
/note="Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type IV
pili, likely by pili disassembly. This retraction provides
the force required for travel of bacteria in low water
environments by a mechanism...; Region: PilT; cd01131"
/db_xref="CDD:29997"
misc_feature 255640..255663
/locus_tag="Dgeo_0264"
/note="Walker A motif; other site"
/db_xref="CDD:29997"
misc_feature order(255649..255651,255655..255666,255862..255864)
/locus_tag="Dgeo_0264"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29997"
misc_feature 255847..255864
/locus_tag="Dgeo_0264"
/note="Walker B motif; other site"
/db_xref="CDD:29997"
gene complement(256472..257845)
/locus_tag="Dgeo_0265"
/db_xref="GeneID:4058550"
CDS complement(256472..257845)
/locus_tag="Dgeo_0265"
/note="KEGG: dra:DR2599 hypothetical protein, ev=1e-141,
57% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603737.1"
/db_xref="GI:94984373"
/db_xref="GeneID:4058550"
/translation="MRRLLIPVLSTVLMTSPPTEALSSITLPITVPLAGAQQAANARV
PSEFARLDETRTFLGGLLSVKLTGTVTRAGQVSVRPSPRGDGLIVSVPIRADFRAEPG
GLGAFLARDFGGTATVSLHVTPFVTPEWEAGAQVKGDATWTDPLSVELAQGVRISVQA
LVEGQVRAQLDRVAADVARAIREGAQLRTRAETLWARAQQPWILPTPEPAYARVTPQS
LTVSSFRFTPEALKLTVGATFDLTAGLGHAPAVPPTPLPLLKVAPPPTPGVELRVPVR
LPYPALSQAATRMAGERPLVLPLPFSPTLRVISVTVTPRGTALNAAVTLRISGPLGLD
LQATADVVGTPTLDPSGHLVTLRDVTVTTRRAGLTGRVLGWLADQRAQAYLARAARFD
LTPQLRQAQRQLQERLPFTPAPGVELAGTVGPLRLNELRVTPEVLVVLATASGQVQGT
VDVGHLR"
misc_feature complement(256490..257791)
/locus_tag="Dgeo_0265"
/note="Domain of unknown function (DUF4403); Region:
DUF4403; pfam14356"
/db_xref="CDD:206524"
gene 257975..259321
/locus_tag="Dgeo_0266"
/db_xref="GeneID:4058551"
CDS 257975..259321
/locus_tag="Dgeo_0266"
/note="PFAM: transposase IS66: (0.00029);
KEGG: dra:DRC0028 transposase, , ev=1e-172, 86% identity"
/codon_start=1
/transl_table=11
/product="transposase IS66"
/protein_id="YP_603738.1"
/db_xref="GI:94984374"
/db_xref="InterPro:IPR004291"
/db_xref="GeneID:4058551"
/translation="MQLRQELERLKAELRELKSRLKRDSETSNQPPSKDPPWKPKSER
QKSERSSGGQRGHPGKTLKFSDEPDDIQPLPLTGQCGCGQAWDEVKATEHLARQVHDL
PELRLHITEFQAEVKICPRCGCRGQAAFPEHVPGQVQYGPRLHALTTYLNVVHFVPLQ
RVTQITDALFGASISDGTVALNINLASERLKPFEDDLKAGLRQQPVLHADETGAKVNG
KLNWFHVACFAGGTLYTLHPQRGYAAIKAAGVLSDFGGVVVHDAWNTYFRLPGEHALC
NAHLLRELRKLDEHDGQPWAGELRRELQQVYHLQKSGGITEQQKMAFYTRFDELVQAA
LEANPVQEPIPKQRGKPKQLPGRNLALRCQQHRAAMLRFLERDDVPFDNNQAERDIRM
LCVKRKVSGGFRSEAGGEAFCRIRSFVSTLHKQGLSVWDGLVDVFRGVLPKLDFSC"
misc_feature 258137..258616
/locus_tag="Dgeo_0266"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3436"
/db_xref="CDD:33242"
misc_feature 258386..259207
/locus_tag="Dgeo_0266"
/note="Transposase IS66 family; Region: DDE_Tnp_IS66;
pfam03050"
/db_xref="CDD:202516"
gene 259414..259839
/locus_tag="Dgeo_0267"
/db_xref="GeneID:4058552"
CDS 259414..259839
/locus_tag="Dgeo_0267"
/note="PFAM: protein of unknown function UPF0047:
(4.8e-53);
KEGG: dra:DR2598 hypothetical protein, ev=5e-62, 80%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603739.1"
/db_xref="GI:94984375"
/db_xref="InterPro:IPR001602"
/db_xref="GeneID:4058552"
/translation="MWAQHDLRLRPLPRGFHLITREVLAAVPELARVRVGLLHVFIKH
TSASLALNENASPDVRRDFERFFNRLVPDGWREFEHTLEGPDDMAAHVKASLLGPSLT
LPVRGGRLALGTWQGIYLCEHRNDGGARQLVLTLQGEEL"
misc_feature 259462..259824
/locus_tag="Dgeo_0267"
/note="Uncharacterized protein family UPF0047; Region:
UPF0047; pfam01894"
/db_xref="CDD:190153"
gene 259878..261005
/locus_tag="Dgeo_0268"
/db_xref="GeneID:4058553"
CDS 259878..261005
/locus_tag="Dgeo_0268"
/note="PFAM: Nitric oxide synthase, NOS: (6.3e-121);
KEGG: dra:DR2597 nitric oxide synthase-related protein,
ev=1e-108, 59% identity"
/codon_start=1
/transl_table=11
/product="nitric-oxide synthase"
/protein_id="YP_603740.1"
/db_xref="GI:94984376"
/db_xref="InterPro:IPR004030"
/db_xref="GeneID:4058553"
/translation="MTPTPCSPSARTAYRRAEAEQFLTLYHEESGLPGLTARLVEVWD
EVGRTGSYTLTSSELTYGARVAWRNSTRCVGRLPWRSLEVRDLRHVTRPDDVFTHLLT
HLRAALNGGRIRPIISIFGPDVRIHNDQLLRYAGYRQPGGGVVGDPQNVPLTEHLRRL
GWTGGPGTPWDVLPLAVEGRGRVRLFSLPEDATCQVPITHPEVPALGGLGLRWFALPV
LSRMTLEVGGLSFPAAPFNGWYVQTEIAARNLADEERYNMLPAVARALGLDMRRDRTL
WRDRALVELNVAVLHSFDRAGVRIADHHAVTRQFVRFEEAEARAGRAVRGRWSWLIPP
LSPATTPVWHRSYVDGDESPRFVPQPPAWEERQAGRCPLHG"
misc_feature 259929..260957
/locus_tag="Dgeo_0268"
/note="Nitric oxide synthase (NOS) produces nitric oxide
(NO) by catalyzing a five-electron heme-based oxidation of
a guanidine nitrogen of L-arginine to L-citrulline via two
successive monooxygenation reactions producing
N(omega)-hydroxy-L-arginine (NHA) as an...; Region:
NOS_oxygenase; cd00575"
/db_xref="CDD:29665"
misc_feature order(260094..260096,260265..260267,260517..260519,
260583..260588,260592..260597,260607..260609,
260619..260624,260862..260867,260949..260951)
/locus_tag="Dgeo_0268"
/note="active site"
/db_xref="CDD:29665"
misc_feature order(260631..260633,260637..260639,260697..260699,
260712..260717,260727..260729,260745..260747,
260784..260789,260877..260879,260883..260891,
260907..260909,260913..260927)
/locus_tag="Dgeo_0268"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29665"
gene complement(261023..263392)
/locus_tag="Dgeo_0269"
/db_xref="GeneID:4058554"
CDS complement(261023..263392)
/locus_tag="Dgeo_0269"
/note="PFAM: peptidase S45, penicillin amidase:
(7.3e-191);
KEGG: tth:TTC1972 penicillin acylase, ev=1e-173, 45%
identity"
/codon_start=1
/transl_table=11
/product="penicillin amidase"
/protein_id="YP_603741.1"
/db_xref="GI:94984377"
/db_xref="InterPro:IPR002692"
/db_xref="GeneID:4058554"
/translation="MRRLVRVGRGVLWVLLLVLLLALGAVVWLKETSRPQVSGTLTLP
GLAGPVSVTRDAWGVPHIRAQASDEDAMFALGFVHAQDRAWQMDFQRRVAQGRLAEVL
GEAALPQDRFLRTWGFYRAAQSALPALSEQARRMVRAYTAGVNAGFAQGRLAPEFRIL
GYTPEPWTDVDSIAWSKLMAYDLGGNADDEILGTQVVRRLGEAKLNEVLPPYPPQAPT
ILSREELGLQAQAPHHRRVATVLPAATLRALQAQLEAARALGLERLPGKGSNDWVIAG
SRTASGKPILADDPHLALSSPMLWYLADVQGPRLRAIGATIPGLPGIVIGRNDRVAWG
VTNVNPDVQDLYIEPDGAKLTARTEVIKVKGQPDVHLTVRESEHGPIISDVGAGAVGP
RVALKWTALQPGDTTLEAFLGLNYARNWPDFVAALKRYVAPSQNFVYADVDGNIGYYA
PGRVPIRRGWDGSLPVPGDGQHEWSGFIPFAQLPHTFNPADGLVVTANNKVVPEGYPF
NLGNIRNWAEPYRAERITALLTQKPRELTVDDVKRVQLDTVSLVWRDLKPFLLATRPD
GDLSRQALEQLRGWNGDERIDVVPPTIFEAWLAELQQMAQDELGDGTRLSSLAVLNQL
RANGQLCRNERDETSRPQDCAGEMQASLKRAVDRLAARLGPNPAGWTYGKVHTVASNH
RAFGGVKALGWLFNHSTPTNGGTNTVNVARPDPDTLRQTQGPSYRQIIDLSDLNRSIY
VGTLGQSGNPFGDHVSDQQRLWAAGEYLPMSTDAQDWGRTTTLTLTPQR"
misc_feature complement(261065..263284)
/locus_tag="Dgeo_0269"
/note="Protein related to penicillin acylase [General
function prediction only]; Region: COG2366"
/db_xref="CDD:32513"
misc_feature complement(<263075..263239)
/locus_tag="Dgeo_0269"
/note="The Ntn hydrolases (N-terminal nucleophile) are a
diverse superfamily of of enzymes that are activated
autocatalytically via an N-terminally lcated nucleophilic
amino acid. N-terminal nucleophile (NTN-) hydrolase
superfamily, which contains a...; Region: Ntn_hydrolase;
cl00467"
/db_xref="CDD:212223"
misc_feature complement(261719..262588)
/locus_tag="Dgeo_0269"
/note="Penicillin G acylase (PGA) belongs to a family of
beta-lactam acylases that includes cephalosporin acylase
(CA) and aculeacin A acylase. PGA and CA are crucial for
the production of backbone chemicals like
6-aminopenicillanic acid and...; Region: Ntn_PGA_like;
cd03747"
/db_xref="CDD:73357"
misc_feature complement(order(261899..261901,262088..262090,
262160..262162,262376..262378,262382..262384,
262418..262420,262517..262519,262586..262588))
/locus_tag="Dgeo_0269"
/note="active site"
/db_xref="CDD:73357"
gene complement(263462..264391)
/locus_tag="Dgeo_0270"
/db_xref="GeneID:4058555"
CDS complement(263462..264391)
/locus_tag="Dgeo_0270"
/note="PFAM: protein of unknown function DUF6,
transmembrane: (1.3e-19);
KEGG: bpm:BURPS1710b_1335 transporter ev=8e-37, 36%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603742.1"
/db_xref="GI:94984378"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4058555"
/translation="MYAKVGPEGATLERVTVTPAPAAPPTTVRAGLGLALVAALGFST
LGIWGKLAGRVGLDSFSVLAWRFGLVALALLPLAGRELTWRQRRPLLGVGLLYALATT
CYFGALSRITAGATGLLLYLAPAFVILFAWLLGRRPDAAKLGAVALAALGLGLVVGIP
GAGDRDPLGLGLGAGAGALYAAYLLASERWLSGVPPLASTGHMALVAGLYFAALAAGT
GTLHVPTTAAQWGVIVGMAALATLVAVPALYGAVERLGAARASLIGTLEPLFTVLLTF
LILAEPLRPAVLLGGALILAGAVLAQRGNRSAP"
misc_feature complement(263537..263833)
/locus_tag="Dgeo_0270"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene 264433..266958
/locus_tag="Dgeo_0271"
/db_xref="GeneID:4058556"
CDS 264433..266958
/locus_tag="Dgeo_0271"
/note="TIGRFAM: primosomal protein N': (3.2e-76);
KEGG: dra:DR2606 primosomal protein N', , ev=0.0, 65%
identity"
/codon_start=1
/transl_table=11
/product="primosomal protein N'"
/protein_id="YP_603743.1"
/db_xref="GI:94984379"
/db_xref="InterPro:IPR005259"
/db_xref="GeneID:4058556"
/translation="MSLPASPPSPAARPPVPWQVVVPFPVPALDYAAPYGYGGAVPVG
CRVLVPWRGELTAALVVGAGEERGAHRLREAVHVLDHEEGPWVPPATVQAVTAWARDA
RLPAGLVWCDLLGVGWSVQLDHRVRAVSGADLSAFARHVPTSHWTDAAGFAPALLDAI
REQGLLEETFRPLPRMQSVVRARPLAAVPAATRTMTVLRALPDPPALTAKGRMAWAWL
AQHGPQDSLSAWARGAGVSTGVVTNVLNAGGAQYVQEEAPPPPAWCWLAERGPVDSLS
AWVRGAAADGVSLSPTLAATLVARGWADMLPEPAPPPPLPEPAPAWTTEGPDRLPEAP
IWRLHGGRPATRLRTLAPRVARLLTQGRGVLVLAPDHATLRRAWAGLSGLAAGVGTRA
VQLSGALSDVQREHAWHLIRAGEARLVIGSYLALTAPLPDPALVVVLEEGSDAYKLPA
GSRAFIPDVAARVAAAHEAALALVGSTPAVESVPLPGAVLPPPRARVHVVDYAHPPEQ
PELGPLSSVHLTPGDLGYPISHDLARLLRQVQERGRQAALLAPRRGYSALLRCPSCDH
TPHCRNCDVPLRFHQETRQLTCHQCGYHQSVPDRCDACGERMWQARGPGTEWIAAEVA
KLTPGLPIYRCDRDRQDDLSPLAAGESGVVVGTQLLLARDAPPNLALIGVTLADTWLN
ISDFRASERYHRLLRQLAEWHPERAPLIVVQTFQADHPALKVLLEGRDVLAYPAAEER
ARKALGYPPHARLAQVEVAARDPQKAKIAAQEIFDVLHGAGATAGEVLGPAPSPVARL
RGVYPYHLLLRARDDARLAQLLSTLDRRWPARVRVDVNPRGGL"
misc_feature <265480..266943
/locus_tag="Dgeo_0271"
/note="Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair]; Region: PriA; COG1198"
/db_xref="CDD:31391"
gene 267337..268071
/locus_tag="Dgeo_0272"
/db_xref="GeneID:4058557"
CDS 267337..268071
/locus_tag="Dgeo_0272"
/note="PFAM: metallophosphoesterase: (8.2e-07);
KEGG: dra:DR2233 hypothetical protein, ev=1e-113, 79%
identity"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_603744.1"
/db_xref="GI:94984380"
/db_xref="InterPro:IPR004843"
/db_xref="InterPro:IPR006186"
/db_xref="GeneID:4058557"
/translation="MIRLAVLSDLHANLEATLAVHADVQRRGIQEIWVLGDLVGKGPR
PREVVEWTQAHASRVIQGNWDARVAGATNRPQDLWPRSKLTPAQLAYLAGLPYGIEEQ
FSGAWWRFVHASSKGLFHRLYPHSSLAEQLEAYMPNPQFGLKVHADALVYADVHETLM
LDVEGRPLINTGSVGNPLDSTLPSYLILEFDPHSPAHSATFVRLTYNRDAEIAAAEAS
GMPFTREYVAELLTGAYQKRRARTGE"
misc_feature 267343..267807
/locus_tag="Dgeo_0272"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature 267349..>267531
/locus_tag="Dgeo_0272"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cd00838"
/db_xref="CDD:163614"
misc_feature order(267361..267363,267367..267369,267445..267447,
267523..267528)
/locus_tag="Dgeo_0272"
/note="active site"
/db_xref="CDD:163614"
misc_feature order(267361..267363,267367..267369,267445..267447,
267523..267525)
/locus_tag="Dgeo_0272"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
gene complement(268112..268903)
/locus_tag="Dgeo_0273"
/db_xref="GeneID:4058558"
CDS complement(268112..268903)
/locus_tag="Dgeo_0273"
/note="KEGG: dra:DR2232 hypothetical protein, ev=7e-99,
71% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603745.1"
/db_xref="GI:94984381"
/db_xref="GeneID:4058558"
/translation="MPRMTAPHAGNPRTRVPKTVWDLIFTLVIPILILSPNMLGSGIS
VADLLGGGTGGNIRAYLIAALIPVAYVLVDLIVNRNVSPVALIGGAGAMVSGGLAFWY
VDGFWYAIKDSARSYLTGILFLLSAATSVPLFRVFLDAASIGEKPEDRAATQQAMRDP
GIHRGLVLATIVFALVDLVGGVVNSVVNYRHVTARFGTDAFNAQVAEVNALMRVPGLV
ISLIGVALAISCVQAAVKRRYGAGASLLEPSKLAAVMRERGEVRL"
gene complement(268980..270419)
/locus_tag="Dgeo_0274"
/db_xref="GeneID:4058559"
CDS complement(268980..270419)
/locus_tag="Dgeo_0274"
/note="shows similarity to CbiX(S)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603746.1"
/db_xref="GI:94984382"
/db_xref="InterPro:IPR002762"
/db_xref="GeneID:4058559"
/translation="MRRDNSPPSPLLDCAHMRSLVLIGHGSHLNGESAGAVYRYAELL
RGRGLYDEVVEGYWKEEPSLRQVLKTTRSTDVTVIPMFISEGYFTETVIPRELGLGHQ
GPVPPEGIARVLGGKTVRYTLPYGVHPGMADVILARAHEVLPDLNAQDTALIVLGHGT
TRNENSSRVIYRNAERLRASGQFAEVHALFLDEDPKVGTWPEVVRAPRVVVVPFFASE
GWHTLETIPEDMGLTGEVTVFPDHPHGPQTVYYAKPVGTHASVADVILHLAEEARGAS
ERGGDEDRTHAEAWAAFLALAREGMRVGEALITPHGGLYELRHALDEGRPGDELTTAV
TPEGLRDLTRRDEGGHHRPVHTFRNLPRGWRAVLSEADLPRGMHYLYPSVVEEGYAHQ
HQTLRATPWPTTARRQTGIYAKVQRATPKQVETVAKSVCGRCLKTRLWAGEKLPRTFF
TGVPGALPCPEACTYLIAEVREAVSGQRE"
misc_feature complement(269562..270371)
/locus_tag="Dgeo_0274"
/note="hypothetical protein; Provisional; Region:
PRK02395"
/db_xref="CDD:179419"
misc_feature complement(270123..270365)
/locus_tag="Dgeo_0274"
/note="Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), N-terminal domain.
SirB catalyzes the ferro-chelation of sirohydrochlorin to
siroheme, the prosthetic group of sulfite and nitrite
reductases. CbiX is a cobaltochelatase; Region:
CbiX_SirB_N; cd03416"
/db_xref="CDD:48643"
misc_feature complement(order(270156..270158,270345..270347))
/locus_tag="Dgeo_0274"
/note="putative active site [active]"
/db_xref="CDD:48643"
misc_feature complement(269127..269972)
/locus_tag="Dgeo_0274"
/note="Sirohydrochlorin ferrochelatase [Inorganic ion
transport and metabolism]; Region: COG2138"
/db_xref="CDD:32321"
misc_feature complement(269652..269966)
/locus_tag="Dgeo_0274"
/note="Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), N-terminal domain.
SirB catalyzes the ferro-chelation of sirohydrochlorin to
siroheme, the prosthetic group of sulfite and nitrite
reductases. CbiX is a cobaltochelatase; Region:
CbiX_SirB_N; cd03416"
/db_xref="CDD:48643"
misc_feature complement(order(269757..269759,269946..269948))
/locus_tag="Dgeo_0274"
/note="putative active site [active]"
/db_xref="CDD:48643"
gene 270543..270968
/locus_tag="Dgeo_0275"
/db_xref="GeneID:4058560"
CDS 270543..270968
/locus_tag="Dgeo_0275"
/note="KEGG: dra:DR2240 hypothetical protein, ev=2e-56,
75% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603747.1"
/db_xref="GI:94984383"
/db_xref="GeneID:4058560"
/translation="MFFEDQDRHQRMARLDPRDSNGDGIVTPQEAAAYIHDYLQNASP
EERRQIMQEYFQQLSPEERQQVGDAIVRSPANPVQHVRADDPADLADAYTRAAQAPAQ
NSQSPLEAAFAPGGALSNPMVKAGLVGLAAMIGSKLLRH"
gene 271075..272160
/locus_tag="Dgeo_0276"
/db_xref="GeneID:4058561"
CDS 271075..272160
/locus_tag="Dgeo_0276"
/note="PFAM: peptidase M20: (5.2e-14) peptidase
dimerisation: (7.3e-10);
KEGG: dra:DR2239 acetylornithine deacetylase, , ev=1e-151,
76% identity"
/codon_start=1
/transl_table=11
/product="peptidase M20"
/protein_id="YP_603748.1"
/db_xref="GI:94984384"
/db_xref="InterPro:IPR001261"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:4058561"
/translation="MPLSYLKRIAQTPAPTFEEGERAALIADLWRGLGYDVARDEVGN
VLTCLTPPGTAGKPALLLAAHLDTVFARGTDVTVREERGRLVGPGVGDNSASLAVVTA
LLRDLRGHEQSLRRPLWVAANVGEEGLGDLRGAKHLLAQHRAQLGALIAVDGYLGVAV
TRAVGVRRYRALFLGPGGHSWGDQAPSALHALGMAVSALYALHRPLSPRTTLNVGLAS
GGTSVNSIAGSAELLLDLRSLDPDVLADLDSRAQAVLHAAAREVGVALRLERVGDRPG
GDLHAEPLLALAREAARESHTDLRLASSSTDANAAAPSHLPAIALGVYRGGNAHREDE
WVQISSLGPGLRFLRRVVELYQQRPVA"
misc_feature 271081..272148
/locus_tag="Dgeo_0276"
/note="Di- and tripeptidases [Amino acid transport and
metabolism]; Region: PepD; COG2195"
/db_xref="CDD:32378"
misc_feature 271081..272112
/locus_tag="Dgeo_0276"
/note="M20 Peptidases, Poly(aspartic acid) hydrolase-like
proteins; Region: M20_PAAh_like; cd03896"
/db_xref="CDD:193516"
misc_feature order(271267..271269,271348..271350,271450..271455,
271531..271533,272062..272064)
/locus_tag="Dgeo_0276"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:193516"
gene 272250..273593
/locus_tag="Dgeo_0277"
/db_xref="GeneID:4058562"
CDS 272250..273593
/locus_tag="Dgeo_0277"
/note="PFAM: peptidase S41: (1e-39);
SMART: PDZ/DHR/GLGF: (3.1e-07);
KEGG: dra:DR1308 protease, , ev=1e-153, 64% identity"
/codon_start=1
/transl_table=11
/product="peptidase S41"
/protein_id="YP_603749.1"
/db_xref="GI:94984385"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR005151"
/db_xref="GeneID:4058562"
/translation="MNATPRRAPAFSLAPRVFVLLAATLLTSGPFGSESLAQSLEVRA
AEVQALSPAQDVFNQVNMLLRQDYGGLSTVDRSALTREYQERLNAVCAPAPTTCAAEK
AYPVLEAELTALGDEHSYFLTPEDYQDFMASATGGNRRQFGVKLAKLDGENRVVLEVI
PQSAAEEAGLQRGDLLQTLDGQPYTYDALREARLAGRTITLGLERAGRPLTVTLTSRD
SSTRDLPRLSYTGPQNSVAVLRIPTFLAGGGVAQRVHDLVGEARAHGARGMIVDLRGD
PGGSLTECDSAVSAFVPTFTRLARTPDGDVPTLVQRGLRIEDGRPSGSVHNPQLWTGP
LAVLVDQGSGSCSEFFAYEVQYAGRGKVIGENTAGVGNTATRLFPVGQDAAVQLTILH
YVKPDGTPYPTHVTPDELHPQTEADLRQLTRGQDTLLTFGVQAVIAAFGQMPAQP"
misc_feature 272364..273566
/locus_tag="Dgeo_0277"
/note="Periplasmic protease [Cell envelope biogenesis,
outer membrane]; Region: Prc; COG0793"
/db_xref="CDD:31136"
misc_feature 272712..272894
/locus_tag="Dgeo_0277"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature <272952..273473
/locus_tag="Dgeo_0277"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cd06567"
/db_xref="CDD:143475"
misc_feature 273282..273284
/locus_tag="Dgeo_0277"
/note="Active site serine [active]"
/db_xref="CDD:143475"
gene complement(273607..273978)
/locus_tag="Dgeo_0278"
/db_xref="GeneID:4058563"
CDS complement(273607..273978)
/locus_tag="Dgeo_0278"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603750.1"
/db_xref="GI:94984386"
/db_xref="GeneID:4058563"
/translation="MLLLVTLLLGWVPVLGPLLLGFLAGRAERGARAVLVLLPALLLQ
TLSLLGIRWLQQAIETRGLEGWLWTALAWLGSPLYSLLGRPLGHLIGDSSPAGFLLLF
TLPAGLGLVLGGLTGRPARRL"
gene complement(274131..276341)
/locus_tag="Dgeo_0279"
/db_xref="GeneID:4058003"
CDS complement(274131..276341)
/locus_tag="Dgeo_0279"
/note="KEGG: dra:DR2265 hypothetical protein, ev=0.0, 69%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603751.1"
/db_xref="GI:94984387"
/db_xref="GeneID:4058003"
/translation="MPSSEQPAQPRSALRRWFLETETPQQDREGFYENEQAAQTQHHQ
HPWWQVMCLTGVDYFSSLGYAPGIAFLAAGALSPIATLVLVLVTLGCALPMYRRVAYE
SPHGDGSLSMLERLLTYWPSKLLVLALLGFVATGFVVTITLSAADAAAHLIENPFFKN
VLAGQQVIVTLALIALLGAVFLKGFKEAIGIAVALVVLYLGLNVILIGRGLVEVVTHA
NLVGDWWSGLRQTYLSPLALIGAALLVFPRLALGMSGFETGVLVMPLVRGKPGDTPER
PLGRIQNARKLLTTAAIIMSTLLLSSSVVSTVLTPPAAFWPAITYTHGVNAGDLTRGS
AVVNVPLDSADNPQQFYTLQLPASSPTGPRSFKMQAQTVGGPVTLNVTVTPTSPGSAV
VTVTKAAGEANGRALAYLAHRLLGEGFGTLYDISTILILWFAGASAMTGLLNIVPRYL
PRYGMAPDWARATRPLVVIFTAICFLVTLLFRADVNAQGGAYATGVLALMTSAAVAVF
LTELRRRHRVTSVFFGLVSAIFIYTISVTILGQPQGLYIALLFIAAILVVSVASRVSR
STELRVSQVTFDAEATRLLRDTARRGLPLRFIANRLNAGDSREYRLKELEVRLDTHLP
QGEPAVFLEVVVTDPSNFSDTVTVTGVQVGRYAILRARGNSVPNTIAAVLLHVRDRTG
VPPHVYFEWSEKGPAVNALRFLLAGEGDIPPLTHEVLRLAEPDPVRRPVVHVGG"
misc_feature complement(<275562..276203)
/locus_tag="Dgeo_0279"
/note="Amino acid permease; Region: AA_permease_2;
pfam13520"
/db_xref="CDD:205698"
gene 276550..277467
/locus_tag="Dgeo_0280"
/db_xref="GeneID:4058004"
CDS 276550..277467
/locus_tag="Dgeo_0280"
/note="PFAM: beta-lactamase-like: (1e-25);
KEGG: dra:DR2264 zinc metallohydrolase, glyoxalase II
family, ev=1e-112, 70% identity"
/codon_start=1
/transl_table=11
/product="beta-lactamase-like protein"
/protein_id="YP_603752.1"
/db_xref="GI:94984388"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:4058004"
/translation="MTSQTSALVPLVPGVHFLPAAVHSVVVEDGRGGALLIDTGLDDS
HARKLLRALEAAKLTPTAILNTHSHADHHGGNAFLLKRFPELEVYAPPLEAAIINHPI
LEPLSLFGAWPPRDLQTKFLLAPPSPARPLPELGRVSLGGVEVELLDVAGHAAQMYAV
QLGDVLYAADALFGPDALAKHPLTFCADSRSQKAAAASLGALTGVRVVLPGHGEPSED
LAGLVAANLAAYTHTTQAVLEAVQAGAGTVDELLARVCVLLGVQMTNAGAVVLNRAVV
SAHLTELLGTGAVEVRVADNRLIFTAPRA"
misc_feature 276616..277185
/locus_tag="Dgeo_0280"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
misc_feature 276619..277224
/locus_tag="Dgeo_0280"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
gene 277636..278304
/locus_tag="Dgeo_0281"
/db_xref="GeneID:4058005"
CDS 277636..278304
/locus_tag="Dgeo_0281"
/note="PFAM: Ferritin and Dps: (5.1e-29);
KEGG: dra:DR2263 DNA-binding stress response protein, Dps
family, ev=6e-87, 77% identity"
/codon_start=1
/transl_table=11
/product="ferritin"
/protein_id="YP_603753.1"
/db_xref="GI:94984389"
/db_xref="InterPro:IPR002177"
/db_xref="InterPro:IPR008331"
/db_xref="GeneID:4058005"
/translation="MTRATKSASRTSGTRKKTKDDQAQPASAALEQTAPEQGAPGVPA
QGDAKADAAHLDTVNNQLVDHGYLTEEEFQTISETLQRNLATTISLYLKFKKYHWDIR
GRFFRDLHLAYDEFIEEIFPTIDEQAERLVALGGSPIAAPADIERFSVVQVPTETVRD
ARTQVKDLVADLTRVGKGYRDDSQTVDEANDPATADMYNGYAATIDKIRWMLQAILDD
DRMN"
misc_feature 277837..278283
/locus_tag="Dgeo_0281"
/note="DNA-binding ferritin-like protein (oxidative damage
protectant) [Inorganic ion transport and metabolism];
Region: Dps; COG0783"
/db_xref="CDD:31126"
misc_feature 277867..278283
/locus_tag="Dgeo_0281"
/note="DPS protein, ferritin-like diiron-binding domain;
Region: DPS; cd01043"
/db_xref="CDD:153102"
misc_feature order(277906..277911,277921..277923,277927..277932,
277963..277965,277996..277998,278008..278010,
278017..278022)
/locus_tag="Dgeo_0281"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153102"
misc_feature order(277927..277929,277963..277965,277975..277977,
278008..278010,278020..278022)
/locus_tag="Dgeo_0281"
/note="DPS ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153102"
misc_feature order(278209..278211,278230..278235)
/locus_tag="Dgeo_0281"
/note="ion pore; other site"
/db_xref="CDD:153102"
gene 278379..278870
/locus_tag="Dgeo_0282"
/db_xref="GeneID:4058006"
CDS 278379..278870
/locus_tag="Dgeo_0282"
/note="KEGG: dra:DR2262 hypothetical protein, ev=8e-67,
76% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603754.1"
/db_xref="GI:94984390"
/db_xref="GeneID:4058006"
/translation="MASFDYSLDYAHLDLRAHPELYRVGVGEQGVLLVQPYKSELLPH
WRFATPEAARMSSETIFRMFLQYLEAGDFVGADMARKFLQMGFTRARRYANHKGGKKY
AGPVPQNGKGRSGAHGRPELPRTVEDPLKAEAARIFKARWDEAEANEEYARLKREHRA
RYG"
misc_feature 278388..278864
/locus_tag="Dgeo_0282"
/note="Domain of unknown function (DUF4385); Region:
DUF4385; pfam14328"
/db_xref="CDD:206496"
gene complement(278963..279556)
/locus_tag="Dgeo_0283"
/db_xref="GeneID:4058007"
CDS complement(278963..279556)
/locus_tag="Dgeo_0283"
/note="KEGG: dra:DR0645 molybdopterin-guanine dinucleotide
biosynthesis protein A, , ev=3e-48, 58% identity"
/codon_start=1
/transl_table=11
/product="molybdopterin-guanine dinucleotide biosynthesis
protein MobA"
/protein_id="YP_603755.1"
/db_xref="GI:94984391"
/db_xref="GeneID:4058007"
/translation="MAAITAGGQSRRFGRDKALAQLEGRSLLEHVAASLDACPLRLLI
APPGRYVLPGWLNVPDTRPGEGPLAALEAALSAAQVQRGGGWVAFAGVDMPRLTPAYW
EALAWASTPSACAVLALDAGGRPQPLAALYHTALLPHVMALLEAGERRLRAAALPECT
VTLPFHILQAISPDALRNVNTPADLAALAEQRQAEGQ"
misc_feature complement(278981..279553)
/locus_tag="Dgeo_0283"
/note="molybdopterin-guanine dinucleotide biosynthesis
protein MobA; Reviewed; Region: mobA; PRK00317"
/db_xref="CDD:178976"
misc_feature complement(279002..279553)
/locus_tag="Dgeo_0283"
/note="MobA catalyzes the formation of molybdopterin
guanine dinucleotide; Region: MobA; cd02503"
/db_xref="CDD:133000"
misc_feature complement(order(279278..279280,279284..279286,
279347..279349,279356..279361,279377..279379,
279506..279508,279530..279532,279536..279544))
/locus_tag="Dgeo_0283"
/note="GTP binding site; other site"
/db_xref="CDD:133000"
gene 279751..280191
/locus_tag="Dgeo_0284"
/db_xref="GeneID:4058008"
CDS 279751..280191
/locus_tag="Dgeo_0284"
/note="KEGG: dra:DR0644 hypothetical protein, ev=3e-16,
29% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603756.1"
/db_xref="GI:94984392"
/db_xref="GeneID:4058008"
/translation="MRKLFAVVLPLALGSCSMMMLPGSPYTLSKQPAAGSLNPSGTVT
ASVSNNMVTTEAKVMGLQANQYYVAHYHNQGTPGTDPCSSNGAPIMSSKIVGQTDASG
MLTLKGSVARADVMNATYFNIHTASDAQGTPADAGVACTAVRMQ"
gene 280213..280788
/locus_tag="Dgeo_0285"
/db_xref="GeneID:4058009"
CDS 280213..280788
/locus_tag="Dgeo_0285"
/note="PFAM: conserved hypothetical protein 95: (8.4e-56)
methyltransferase small: (0.00034);
KEGG: dra:DR0643 N-6 adenine-specific DNA restriction
methylase, , ev=9e-61, 63% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603757.1"
/db_xref="GI:94984393"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR004398"
/db_xref="InterPro:IPR007848"
/db_xref="GeneID:4058009"
/translation="MPRSRRACVTLLPVSVRILGGSAKGRALKVPASARPSGARLRKS
LFDLLASRAPGGTFLDLHGGSGAVGLEAASRGYAVTLVEKDTGAIRALEENSRLLGLP
VRILRGDALGLLPRLGSFDVVFSDPPYAQDIPRLAERLLASGVVAPGGLLVCQHPDRT
HLPDAPGWTREERFYGSNTLTLYTRDNIKPA"
misc_feature 280381..280677
/locus_tag="Dgeo_0285"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(280393..280413,280459..280464,280534..280542,
280588..280590)
/locus_tag="Dgeo_0285"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 280785..281339
/gene="coaD"
/locus_tag="Dgeo_0286"
/db_xref="GeneID:4058010"
CDS 280785..281339
/gene="coaD"
/locus_tag="Dgeo_0286"
/note="Catalyzes the conversion of ATP and pantetheine
4'-phosphate to diphosphate and 3'-dephospho-coA"
/codon_start=1
/transl_table=11
/product="phosphopantetheine adenylyltransferase"
/protein_id="YP_603758.1"
/db_xref="GI:94984394"
/db_xref="InterPro:IPR001980"
/db_xref="InterPro:IPR004820"
/db_xref="InterPro:IPR004821"
/db_xref="GeneID:4058010"
/translation="MNAVFPGSFDPITSGHMDVLTRASRIFEHVTVTVMHNARKQGRH
LFSLEERLEILREATAHLPNVSVDSFSGLLVDYMRQQQKGIIVRGLRAVSDYEYELQI
AHLNRQIGEVETVFIMAATRWSFVSSTMVKEIASYGGDISEMVPRASAAALKRKFAQQ
YAAREAELSSAGERGAQQAAESKT"
misc_feature 280785..281261
/gene="coaD"
/locus_tag="Dgeo_0286"
/note="phosphopantetheine adenylyltransferase;
Provisional; Region: coaD; PRK00168"
/db_xref="CDD:178911"
misc_feature 280791..281249
/gene="coaD"
/locus_tag="Dgeo_0286"
/note="Phosphopantetheine adenylyltransferase; Region:
PPAT; cd02163"
/db_xref="CDD:173914"
misc_feature order(280797..280811,280827..280832,280839..280841,
280887..280889,280902..280904,280998..281006,
281046..281051,281055..281057,281076..281081,
281088..281090,281100..281102,281139..281141,
281151..281153,281160..281162)
/gene="coaD"
/locus_tag="Dgeo_0286"
/note="active site"
/db_xref="CDD:173914"
misc_feature 280821..280832
/gene="coaD"
/locus_tag="Dgeo_0286"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:173914"
gene complement(281378..282604)
/locus_tag="Dgeo_0287"
/db_xref="GeneID:4058011"
CDS complement(281378..282604)
/locus_tag="Dgeo_0287"
/note="catalyzes the formation of S-adenosylmethionine
from methionine and ATP; methionine adenosyltransferase"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine synthetase"
/protein_id="YP_603759.1"
/db_xref="GI:94984395"
/db_xref="InterPro:IPR002133"
/db_xref="GeneID:4058011"
/translation="MRKFYTSESVSEGHPDKLADFISDSLLDEFLRQEPESRVAVETL
VTTGMAVVAGEVRARSAHVDVQKVVREAVQKVGYTRANYGFDAEYSAVLVSIHEQSPE
IGGTVDRSEEWRQMTPQERARPENTFSEVGAGDQGLMFGYATDETPELMPLPISLAHR
LTRRLAELRKSGALPYLRPDAKAQVTVVRNGEPHEATETHVDTIVISTQHSEDVSQEQ
IEADMLEHVVRAVIPHELLTPETKFFINPSGRFVIGGPHGDTGLTGRKIIVDTYGGAV
PHGGGAFSGKDPTKVDRSAAYYARYIAKNIVAAGLARRALVEVAYAIGRAHPVSLRVD
TYGTGTLSDERLADLVRAHFDARPQAIIAELDLQRPIYAQTAAYGHFGRPEFPWEQTN
KAEALRRAAEELKQEA"
misc_feature complement(281429..282604)
/locus_tag="Dgeo_0287"
/note="S-adenosylmethionine synthetase; Validated; Region:
PRK05250"
/db_xref="CDD:179974"
misc_feature complement(282302..282604)
/locus_tag="Dgeo_0287"
/note="S-adenosylmethionine synthetase, N-terminal domain;
Region: S-AdoMet_synt_N; pfam00438"
/db_xref="CDD:201226"
misc_feature complement(281852..282217)
/locus_tag="Dgeo_0287"
/note="S-adenosylmethionine synthetase, central domain;
Region: S-AdoMet_synt_M; pfam02772"
/db_xref="CDD:202384"
misc_feature complement(281435..281848)
/locus_tag="Dgeo_0287"
/note="S-adenosylmethionine synthetase, C-terminal domain;
Region: S-AdoMet_synt_C; pfam02773"
/db_xref="CDD:111646"
gene complement(282755..283237)
/locus_tag="Dgeo_0288"
/db_xref="GeneID:4058012"
CDS complement(282755..283237)
/locus_tag="Dgeo_0288"
/note="PFAM: GCN5-related N-acetyltransferase: (3.8e-21);
KEGG: tfu:Tfu_1670 acetyltransferase, ev=2e-16, 35%
identity"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_603760.1"
/db_xref="GI:94984396"
/db_xref="InterPro:IPR000182"
/db_xref="GeneID:4058012"
/translation="MPVLLDLSPDDPRVRELMNAQQRELRALYQDTAERTEPFHPAVL
AREGGALLAVEKDGALLACGALKRIGPDTAEVKRMYTVPELRGRGLGRQILTALIERG
RALGLRRLVLETGELQAEAIRLYESAGFRRIPNYGYYVGMAGSLCYELSLALPSDPAR
"
misc_feature complement(282830..283132)
/locus_tag="Dgeo_0288"
/note="ribosomal-protein-alanine acetyltransferase;
Region: rimI; TIGR01575"
/db_xref="CDD:162430"
misc_feature complement(<282953..283087)
/locus_tag="Dgeo_0288"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(282962..282967,282995..283003))
/locus_tag="Dgeo_0288"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(283418..283909)
/locus_tag="Dgeo_0289"
/db_xref="GeneID:4058013"
CDS complement(283418..283909)
/locus_tag="Dgeo_0289"
/note="KEGG: dra:DR2006 hypothetical protein, ev=2e-47,
62% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603761.1"
/db_xref="GI:94984397"
/db_xref="GeneID:4058013"
/translation="MLIEARQHFTLSHPGGQMAALAFVRNAGVALARVRFLHGLAADT
EGVRGELVVPVPVLGEVDLPFQSRLTVTPNGATLTPQPLTGERAWVEVAGEAQVDEVG
TVTFHFHFRAHLALPQSEGWGGAAFEKMVRAAAGRTLERVAGELPLGIGAAMETDVGR
TGQ"
misc_feature complement(283472..283888)
/locus_tag="Dgeo_0289"
/note="Protein of unknown function (DUF3809); Region:
DUF3809; pfam12723"
/db_xref="CDD:193199"
gene complement(283935..284174)
/locus_tag="Dgeo_0290"
/db_xref="GeneID:4058014"
CDS complement(283935..284174)
/locus_tag="Dgeo_0290"
/note="KEGG: dra:DR2007 hypothetical protein, ev=1e-27,
80% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603762.1"
/db_xref="GI:94984398"
/db_xref="GeneID:4058014"
/translation="MTDASSPDLPPDLARQLEALGGQLVWRIGKDELGDDVIVRLGYA
SATPRFAHLPRLRSANDAELQAALNENRVVIEWVD"
misc_feature complement(283938..284126)
/locus_tag="Dgeo_0290"
/note="Protein of unknown function (DUF3248); Region:
DUF3248; pfam11609"
/db_xref="CDD:204688"
gene complement(284171..284530)
/locus_tag="Dgeo_0291"
/db_xref="GeneID:4058015"
CDS complement(284171..284530)
/locus_tag="Dgeo_0291"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603763.1"
/db_xref="GI:94984399"
/db_xref="GeneID:4058015"
/translation="MRRCFQVDERSRSTRQIRRQIRLRSLETVQCAGGKHPVSVLTLG
LSRLDHAVEFGLDPLAHAAKRHGLHVRHTAPGQEGTVEGGQGVEAHTGFEGAPAQGGG
GHAVRSISQQAHVQWPA"
gene complement(284614..285513)
/locus_tag="Dgeo_0292"
/db_xref="GeneID:4058016"
CDS complement(284614..285513)
/locus_tag="Dgeo_0292"
/note="TIGRFAM: arginase: (1.4e-115);
PFAM: Arginase/agmatinase/formiminoglutamase: (2.9e-105);
KEGG: dra:DR0651 arginase, ev=1e-137, 81% identity"
/codon_start=1
/transl_table=11
/product="arginase"
/protein_id="YP_603764.1"
/db_xref="GI:94984400"
/db_xref="InterPro:IPR005924"
/db_xref="InterPro:IPR006035"
/db_xref="GeneID:4058016"
/translation="MNVHILGIPMDLGAGRRGVDMGPSALRNAHLAARLRELGHTVHD
RGDVDVALPETLDKHASAGLVFLEPILEACRSAAERLAALPGDVFPITLGGDHSVSMG
TVTGNARRGNSAGERTGLIWVDAHTDYNTPESSPSGNIHGMPVAHLTGLGDPALAGLG
DGWHLRPEDIVMIGIRSVDARERDLLRAAGIKAYTMKEVDQLGITRITEETLERLGDV
TRLHVSFDADALDPSVAPGVGTPVPGGLTYREGHLLMELLSESGRVTSLDIVEVNPVL
DTRNQTAEVMVGMAASLLGQRIL"
misc_feature complement(284635..285507)
/locus_tag="Dgeo_0292"
/note="Arginase family; Region: Arginase; cd09989"
/db_xref="CDD:212515"
misc_feature complement(order(284701..284703,284830..284832,
284836..284838,284968..284970,284977..284979,
285088..285093,285124..285126,285130..285132,
285136..285138,285142..285144,285223..285225))
/locus_tag="Dgeo_0292"
/note="active site"
/db_xref="CDD:212515"
misc_feature complement(order(284830..284832,284836..284838,
285130..285132,285136..285138,285142..285144,
285223..285225))
/locus_tag="Dgeo_0292"
/note="Mn binding site [ion binding]; other site"
/db_xref="CDD:212515"
misc_feature complement(order(284746..284748,284764..284787,
284887..284889,284896..284901,284908..284919,
284923..284931,284953..284958,284965..284967,
284980..284982,284986..284988))
/locus_tag="Dgeo_0292"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:212515"
gene 285639..286319
/locus_tag="Dgeo_0293"
/db_xref="GeneID:4058017"
CDS 285639..286319
/locus_tag="Dgeo_0293"
/note="PFAM: metallophosphoesterase: (3.1e-06);
KEGG: ttj:TTHA0053 hypothetical protein, ev=1e-39, 47%
identity"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_603765.1"
/db_xref="GI:94984401"
/db_xref="InterPro:IPR004843"
/db_xref="GeneID:4058017"
/translation="MVLFPLDSPDTPSVMPDPVPSSRSGPRRLLVVADYPHPFVYRTG
FPRGLPEVDLVLAAGDLPGAYLEFLASTLPVPVVYVHGNHANEDVQEGDQRVPPRGVI
AAHGRVLTVGGLRIAGWGGVPRYSLEGPGQYTEAQARWGLARLAWRARAGVDILLTHA
PPAGPHAGSDYAHRGCEAITHFMARRHPRLVVHGHIHEYEGRKPDYIDPASGARVVNA
YGYRLIEL"
misc_feature 285720..286235
/locus_tag="Dgeo_0293"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature 285726..>285890
/locus_tag="Dgeo_0293"
/note="Thermus thermophilus TTHA0053 and related proteins,
metallophosphatase domain; Region: MPP_TTHA0053; cd07403"
/db_xref="CDD:163646"
misc_feature order(285738..285740,285744..285746,285816..285818,
285885..285890)
/locus_tag="Dgeo_0293"
/note="putative active site [active]"
/db_xref="CDD:163646"
misc_feature order(285738..285740,285744..285746,285816..285818,
285885..285887)
/locus_tag="Dgeo_0293"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:163646"
misc_feature <286095..286316
/locus_tag="Dgeo_0293"
/note="Thermus thermophilus TTHA0053 and related proteins,
metallophosphatase domain; Region: MPP_TTHA0053; cd07403"
/db_xref="CDD:163646"
gene 286616..287056
/locus_tag="Dgeo_0294"
/db_xref="GeneID:4058018"
CDS 286616..287056
/locus_tag="Dgeo_0294"
/note="KEGG: dra:DR2231 hypothetical protein, ev=7e-49,
72% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603766.1"
/db_xref="GI:94984402"
/db_xref="GeneID:4058018"
/translation="MSDLPPSNAARLREFHRAAGLTSPERPTVPDLGLLTLRRTLIQE
EVQEVEEEWARLESRLRTGEAVPPGDLAPLAHELADLLYVTYGALDALGIDANAVFAE
VHRANLSKTSGPKRADGKQLKPEGWQPANVRGVIEAQEVVSGKW"
misc_feature 286637..287023
/locus_tag="Dgeo_0294"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain found in Deinococcus radiodurans
DR2231 protein and its bacterial homologs; Region:
NTP-PPase_DR2231; cd11544"
/db_xref="CDD:212151"
misc_feature order(286637..286639,286646..286651,286655..286660,
286667..286672,286721..286723,286727..286732,
286739..286744,286790..286792,286799..286804,
286811..286813,286835..286843,286847..286864,
286868..286873,286877..286882,286889..286891,
286895..286897,286901..286906,286910..286918,
286922..286927,286934..286939,286943..286948)
/locus_tag="Dgeo_0294"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212151"
misc_feature order(286787..286789,286796..286798,286844..286846,
286853..286855,286922..286924,286934..286936,
286943..286945,286970..286978,286982..286984)
/locus_tag="Dgeo_0294"
/note="active site"
/db_xref="CDD:212151"
misc_feature order(286787..286789,286796..286798,286844..286846,
286853..286855)
/locus_tag="Dgeo_0294"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212151"
gene complement(287099..287635)
/locus_tag="Dgeo_0295"
/db_xref="GeneID:4058019"
CDS complement(287099..287635)
/locus_tag="Dgeo_0295"
/note="KEGG: dra:DR0070 hypothetical protein, ev=1e-71,
72% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603767.1"
/db_xref="GI:94984403"
/db_xref="GeneID:4058019"
/translation="MLHIEFITDLGAKVTVDVESADKLLDVQRQYGRLGWTSGEVPVG
GYQFPLENEPDFDWSLIGARKWTNPEGEEMILHRGHAYRRRELEAVDSRKMKLPAAVK
YSRGAKNTDPEHVREKADGEFEYVTLAIFRGGKRQERYAVPGSNRPQAGAPARSAATR
AQGARPGAVAVQDEETPF"
misc_feature complement(287231..287632)
/locus_tag="Dgeo_0295"
/note="DdrB-like protein; Region: DdrB; pfam12747"
/db_xref="CDD:193223"
gene 287677..288804
/locus_tag="Dgeo_0296"
/db_xref="GeneID:4058020"
CDS 287677..288804
/locus_tag="Dgeo_0296"
/note="PFAM: protein of unknown function DUF450:
(1.1e-11);
KEGG: dra:DR0137 hypothetical protein, ev=7e-92, 54%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603768.1"
/db_xref="GI:94984404"
/db_xref="InterPro:IPR007409"
/db_xref="GeneID:4058020"
/translation="MQCDLRRGALLDSPNMPSPVLPIHDAVRDAVQDIQRWLTALPSP
GEAVVRQAIVLRLLQAAGFDIWNPAEVVPEETNATGNRADFLIRVGAGKFALEVKGMG
VTLGASHFQQAATYAVNEGTRWAIVTNGRVWIVIDEHLPGKWEERVALRAELAQEGDT
FAADLATLLDAETWRADAFAGAVEMVRQRQRRRRDEARIEREKRPIVEALQAKYRIPT
FELAAENAVEAGKITEAERDVLLGKSGKNTSGSDLPPLPPSSEILFTYRIREAEARAL
YRPADGTWTVLAGSTALNRVLGQDGSNAKGIEKRRKKLREGGQLAVKSSTLLEYLQDV
RYSSASIAAVDIAGASCNGWLCWKDAQGKPAQHHRPPAQPG"
misc_feature 287743..288774
/locus_tag="Dgeo_0296"
/note="Predicted type IV restriction endonuclease [Defense
mechanisms]; Region: COG2810"
/db_xref="CDD:32639"
misc_feature 287812..288114
/locus_tag="Dgeo_0296"
/note="Type I restriction enzyme R protein N terminus
(HSDR_N); Region: HSDR_N; cl14958"
/db_xref="CDD:209937"
misc_feature 288607..288768
/locus_tag="Dgeo_0296"
/note="Domain of unknown function (DUF4357); Region:
DUF4357; pfam14267"
/db_xref="CDD:206435"
gene complement(288792..289163)
/locus_tag="Dgeo_0297"
/db_xref="GeneID:4058021"
CDS complement(288792..289163)
/locus_tag="Dgeo_0297"
/note="TIGRFAM: Phenylacetic acid degradation-related
protein: (1.2e-21) Phenylacetic acid degradation protein
PaaD: (1.5e-59);
PFAM: thioesterase superfamily: (6.5e-22);
KEGG: dra:DR2321 phenylacetic acid degradation protein
PaaI, , ev=3e-51, 83% identity"
/codon_start=1
/transl_table=11
/product="phenylacetic acid degradation protein PaaD"
/protein_id="YP_603769.1"
/db_xref="GI:94984405"
/db_xref="InterPro:IPR003736"
/db_xref="InterPro:IPR006683"
/db_xref="InterPro:IPR011973"
/db_xref="GeneID:4058021"
/translation="MSYADTLGIRVLEATPGLTRVTLTVTEGGLNMHGTAHGGLLFSL
ADEAFAIISNLEAQAVAVETHLSFFRAAREGDQLVAVATPERVGRTLATYRVEVRRGE
AGEVLALFLGTVSRRERGQPG"
misc_feature complement(288816..289148)
/locus_tag="Dgeo_0297"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature complement(order(288951..288962,288981..288983,
289056..289058))
/locus_tag="Dgeo_0297"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature complement(order(288960..288962,288966..288980,
289038..289040,289047..289049,289053..289055))
/locus_tag="Dgeo_0297"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
misc_feature complement(order(288981..288983,289011..289016,
289023..289028,289050..289052))
/locus_tag="Dgeo_0297"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
gene 289216..290289
/locus_tag="Dgeo_0298"
/db_xref="GeneID:4058022"
CDS 289216..290289
/locus_tag="Dgeo_0298"
/note="PFAM: peptidase M42: (1.1e-99);
KEGG: dra:DR0946 hypothetical protein, ev=1e-152, 80%
identity"
/codon_start=1
/transl_table=11
/product="peptidase M42"
/protein_id="YP_603770.1"
/db_xref="GI:94984406"
/db_xref="InterPro:IPR008007"
/db_xref="GeneID:4058022"
/translation="MTVLSAPTSAARPGDFDLPYTTDLLLRLLNTPSPTGFTEAAVRL
LEGELDALGVPHRRSKKGALTWEIAGQPGQPHTTFSGHVDTLGAMVKEIKENGRLRLF
PLGGYDWATIEGEYVQVHTGRGEAVTGTVVNTHQSTHVHGPALRELRREQAVMEVRLD
APTTSPEETRALGIEVGDFVSFDPRATLTDAGYMKSRHLDNKAAVAVFLGVTRALLEA
PPARTVAFHVTTYEEVGHGAATGIPPHTDELIAVDMAAVGEGQTSSEHHVTLCVADSG
GPYDHALGNRLRAAARRAGLELRVDLYPYYASDGTAAWRAGGDYPVALIGPGVDASHA
YERTHLDALRATAELMLAHVRGE"
misc_feature 289321..290280
/locus_tag="Dgeo_0298"
/note="Cellulase M and related proteins [Carbohydrate
transport and metabolism]; Region: FrvX; COG1363"
/db_xref="CDD:31554"
misc_feature 289321..290277
/locus_tag="Dgeo_0298"
/note="Zinc peptidases M18, M20, M28, and M42; Region:
Zinc_peptidase_like; cl14876"
/db_xref="CDD:213133"
misc_feature order(289459..289461,289813..289815,289909..289914,
289972..289974,290212..290214)
/locus_tag="Dgeo_0298"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193495"
gene 290273..291022
/locus_tag="Dgeo_0299"
/db_xref="GeneID:4058023"
CDS 290273..291022
/locus_tag="Dgeo_0299"
/note="PFAM: Silent information regulator protein Sir2:
(1.1e-71);
KEGG: dra:DR0016 hypothetical protein, ev=4e-89, 69%
identity"
/codon_start=1
/transl_table=11
/product="silent information regulator protein Sir2"
/protein_id="YP_603771.1"
/db_xref="GI:94984407"
/db_xref="InterPro:IPR001020"
/db_xref="InterPro:IPR003000"
/db_xref="GeneID:4058023"
/translation="MCGESDPLNLTQARAALQQARRVAVLTGAGVSAESGIPTFRDAQ
TGYWARFRPEDLASPEAYRRDPQTVWQWYASRYKAVTRAQPNAAHRLLAELEREKGEG
FFLATQNVDGLHTRAGSERLVELHGNLTTARCETCGAVTSLPAPDTFTPPPVCPTCGA
PMRPNVVWFGELLPRHALEAATRAFQDADVALIVGTSGVVYPAAGLALETRRAGGVVI
EVNPQETELTADMSFSVRDVASRGLATLLHG"
misc_feature 290351..291013
/locus_tag="Dgeo_0299"
/note="NAD-dependent deacetylase; Provisional; Region:
PRK00481"
/db_xref="CDD:179043"
misc_feature 290351..291013
/locus_tag="Dgeo_0299"
/note="SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB;
and are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which...; Region:
SIRT5_Af1_CobB; cd01412"
/db_xref="CDD:29380"
misc_feature order(290360..290362,290366..290371,290390..290395,
290537..290539,290594..290599,290603..290605,
290648..290650,290855..290857,290870..290872,
290936..290941,290984..290986)
/locus_tag="Dgeo_0299"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29380"
misc_feature order(290600..290602,290648..290650,290771..290773,
290777..290791,290867..290875)
/locus_tag="Dgeo_0299"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29380"
misc_feature order(290672..290674,290681..290683,290735..290737,
290744..290746)
/locus_tag="Dgeo_0299"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29380"
gene 291095..291247
/locus_tag="Dgeo_R0007"
/db_xref="GeneID:4057693"
misc_RNA 291095..291247
/locus_tag="Dgeo_R0007"
/note="FMN riboswitch (RFN element) as predicted by Rfam
(RF00050), score 102.56"
/db_xref="GeneID:4057693"
gene 291284..292435
/locus_tag="Dgeo_0300"
/db_xref="GeneID:4058024"
CDS 291284..292435
/locus_tag="Dgeo_0300"
/note="TIGRFAM: riboflavin biosynthesis protein RibD:
(3.2e-109);
PFAM: CMP/dCMP deaminase, zinc-binding: (4.4e-41)
bifunctional deaminase-reductase-like: (7.3e-39);
KEGG: dra:DR0153
diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase,
ev=1e-119, 65% identity"
/codon_start=1
/transl_table=11
/product="riboflavin biosynthesis protein RibD"
/protein_id="YP_603772.1"
/db_xref="GI:94984408"
/db_xref="InterPro:IPR002125"
/db_xref="InterPro:IPR002734"
/db_xref="InterPro:IPR004794"
/db_xref="GeneID:4058024"
/translation="MCERKALPGPGAENVDVGKVPGEAADAALMDQALAQAAYGLGRT
APNPPVGCVIVRGGEVVGRGFHPRAGEPHAEVFALREAGERARGATAYVTLEPCSHFG
RTPPCADALIRAGVARVVVAALDPNPQVAGRGVERLRAAGLHVTVGVGEEAALRQQAG
FRSLVARGRPWVVYKYAMTLDGKVAAPGEGNGAVTSAPARARVMRWRNELDAVAVGSG
TLLADDPALTTRGVPGGRDPRPVLFDRRARTPVAARALRPGTIVVTAPETNTDHLEAA
GAVILRADSLPEALHGLGELNISSLLLEGGPRLASAFFADGLIDEVRALIAPRLLGAG
LPPLDGPARPLAQAQILRDPQGEPLGPDLLVTGRLNEIPRLHLAAARAE"
misc_feature 291401..291709
/locus_tag="Dgeo_0300"
/note="Riboflavin-specific deaminase. Riboflavin
biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase)
catalyzes the deamination of
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate, which is an intermediate step in the...;
Region: Riboflavin_deaminase-reductase; cd01284"
/db_xref="CDD:29827"
misc_feature order(291500..291508,291572..291577,291602..291604)
/locus_tag="Dgeo_0300"
/note="catalytic motif [active]"
/db_xref="CDD:29827"
misc_feature order(291500..291502,291506..291508,291575..291577,
291602..291604)
/locus_tag="Dgeo_0300"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29827"
misc_feature 291782..292396
/locus_tag="Dgeo_0300"
/note="Pyrimidine reductase, riboflavin biosynthesis
[Coenzyme metabolism]; Region: RibD; COG1985"
/db_xref="CDD:32168"
gene 292438..293082
/locus_tag="Dgeo_0301"
/db_xref="GeneID:4058025"
CDS 292438..293082
/locus_tag="Dgeo_0301"
/note="catalyzes the formation of riboflavin from
6,7-dimethyl-8-(1-D-ribityl)lumazine"
/codon_start=1
/transl_table=11
/product="riboflavin synthase subunit alpha"
/protein_id="YP_603773.1"
/db_xref="GI:94984409"
/db_xref="InterPro:IPR001783"
/db_xref="GeneID:4058025"
/translation="MFTGIVEQVGRVARAEERGGTLTVTVTPERLWPDLELGESIAVN
GTCLTVTGWDETGFTADLSRETLKKTAPNWHVGAHLNLERAMTAAARFGGHVVSGHVD
GIGEILEVREDSGSCTVTVRAAPHLARYLVPKGSVTVDGVSLTVVDTGGPGGSRTDLA
PNEFTLWLVPHTLAVTTLGGWRKGTVVNLEADQLAKYVERLLLMRDFGRAEVGA"
misc_feature 292438..293046
/locus_tag="Dgeo_0301"
/note="riboflavin synthase subunit alpha; Provisional;
Region: PRK09289"
/db_xref="CDD:181760"
misc_feature 292444..292692
/locus_tag="Dgeo_0301"
/note="Lumazine binding domain; Region: Lum_binding;
pfam00677"
/db_xref="CDD:201387"
misc_feature 292729..293013
/locus_tag="Dgeo_0301"
/note="Lumazine binding domain; Region: Lum_binding;
pfam00677"
/db_xref="CDD:201387"
gene 293079..294290
/locus_tag="Dgeo_0302"
/db_xref="GeneID:4058026"
CDS 293079..294290
/locus_tag="Dgeo_0302"
/note="PFAM: 3,4-dihydroxy-2-butanone 4-phosphate
synthase: (1.1e-114) GTP cyclohydrolase II: (2e-108);
KEGG: dra:DR0155 GTP cyclohydrolase
II/3,4-dihydroxy-2-butanone-4-phosphate synthase, ev=0.0,
84% identity"
/codon_start=1
/transl_table=11
/product="GTP cyclohydrolase II"
/protein_id="YP_603774.1"
/db_xref="GI:94984410"
/db_xref="InterPro:IPR000422"
/db_xref="InterPro:IPR000926"
/db_xref="GeneID:4058026"
/translation="MRLASIPELLAELRAGRPVILVDDERRENEGDLLMPAATATPEW
VNFMAREGRGLICVTLTPERAHTLDLTPMVGMSTDPHGTAFTVSVDHISTSTGISAFD
RAATIRALLDPAARPEDFRRPGHIFPLVARPGGVLRRAGHTEAACDLARLAGFAPVGV
ICEIMGDSGEMLRLPDLLAFGERHGLKVGSIEALIAYRMEHDPFMRIAAEAKLPTAYG
EFRLVGFEDTLSGAEHVALVMGEVNEEPLLVRVHSECLTGDAFHSLRCDCGPQRDAAL
RAIAEEGRGVLVYLRQEGRGIGLLNKIRAYALQDQGADTVEANLRLGFPADARDFGIG
AQILHLLGARRLRVLTNNPRKLHALGGFGLEVVERVPLHVGQNVHNAAYLATKAEKLG
HLALPSSQESA"
misc_feature 293079..294260
/locus_tag="Dgeo_0302"
/note="bifunctional 3,4-dihydroxy-2-butanone 4-phosphate
synthase/GTP cyclohydrolase II protein; Provisional;
Region: PRK09311"
/db_xref="CDD:181774"
misc_feature 293094..293672
/locus_tag="Dgeo_0302"
/note="3,4-dihydroxy-2-butanone 4-phosphate synthase;
Region: DHBP_synthase; pfam00926"
/db_xref="CDD:201508"
misc_feature 293691..294260
/locus_tag="Dgeo_0302"
/note="GTP cyclohydrolase II (RibA). GTP cyclohydrolase
II catalyzes the conversion of GTP to
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'
phosphate, formate, pyrophosphate (APy), and GMP in the
biosynthetic pathway of riboflavin. Riboflavin is the...;
Region: GTP_cyclohydro2; cd00641"
/db_xref="CDD:88311"
misc_feature order(293700..293720,293742..293744,293748..293756,
293775..293777,293781..293783,293787..293789,
293838..293840,293844..293849,293853..293867,
293871..293873,293892..293897,293904..293906,
293943..293945,293949..293951,293973..293978,
293985..293990,293994..293999,294006..294008)
/locus_tag="Dgeo_0302"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:88311"
misc_feature order(293826..293843,293847..293849,293874..293876,
293880..293882,293889..293891,293952..293963,
293982..293984,293994..293996,294003..294005,
294021..294023,294057..294059,294063..294065,
294126..294134,294141..294143)
/locus_tag="Dgeo_0302"
/note="active site"
/db_xref="CDD:88311"
gene 294287..294751
/gene="ribH"
/locus_tag="Dgeo_0303"
/db_xref="GeneID:4058027"
CDS 294287..294751
/gene="ribH"
/locus_tag="Dgeo_0303"
/note="RibE; 6,7-diimethyl-8-ribityllumazine synthase;
DMRL synthase; lumazine synthase; beta subunit of
riboflavin synthase; condenses
5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione
with L-3,4-dihydrohy-2-butanone-4-phosphate to generate
6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then
uses 2 molecules of DMRL to produce riboflavin (vitamin
B12); involved in the last steps of riboflavin
biosynthesis; forms a 60mer (icosahedral shell) in both
Bacillus subtilis and Escherichia coli; in Bacillus
subtilis this 60mer is associated with the riboflavin
synthase subunit (alpha) while in Escherichia coli it is
not"
/codon_start=1
/transl_table=11
/product="6,7-dimethyl-8-ribityllumazine synthase"
/protein_id="YP_603775.1"
/db_xref="GI:94984411"
/db_xref="InterPro:IPR002180"
/db_xref="GeneID:4058027"
/translation="MNRIEGHLLAADLRFAIVSTRWNHLIVDRLVEGAELAFVQHGGK
SENLDHFIVPGSHELPLVARRLAETGKYDAVVCLGAVIRGDTDHYKFVAGGAASGILN
SALHTGVPIAFGVLTTETVEQALNRAGIKAGNKGAEATLAMIETVNLLRQIR"
misc_feature 294329..294727
/gene="ribH"
/locus_tag="Dgeo_0303"
/note="lumazine synthase (6,7-dimethyl-8-ribityllumazine
synthase, LS), catalyzes the penultimate step in the
biosynthesis of riboflavin (vitamin B2); type-I; Region:
Lumazine_synthase-I; cd09209"
/db_xref="CDD:187742"
misc_feature order(294332..294334,294350..294352,294437..294448,
294455..294460,294464..294472,294476..294484,
294488..294490,294500..294502,294533..294535,
294539..294544,294548..294550,294554..294559,
294563..294571,294575..294583,294587..294601,
294608..294613,294623..294625,294629..294631,
294635..294637,294641..294643,294653..294655,
294665..294667,294689..294691,294698..294700,
294710..294712,294719..294724)
/gene="ribH"
/locus_tag="Dgeo_0303"
/note="homopentamer interface [polypeptide binding]; other
site"
/db_xref="CDD:187742"
misc_feature order(294350..294355,294449..294460,294521..294538,
294542..294544,294548..294553,294620..294634,
294665..294667,294689..294691,294698..294700)
/gene="ribH"
/locus_tag="Dgeo_0303"
/note="active site"
/db_xref="CDD:187742"
gene 294868..296358
/locus_tag="Dgeo_0304"
/db_xref="GeneID:4058028"
CDS 294868..296358
/locus_tag="Dgeo_0304"
/note="PFAM: protein of unknown function DUF512:
(3.2e-117);
SMART: PDZ/DHR/GLGF: (9.4e-10);
KEGG: dra:DR2521 hypothetical protein, ev=0.0, 82%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603776.1"
/db_xref="GI:94984412"
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR007549"
/db_xref="GeneID:4058028"
/translation="MTAAEQLQTVQQQEQQEQVFPAPIKTVEPGSPAERAGVRPGDLL
IRVNGESVTDVLAYRHRLSQGRATLEISRPVERPAVLSGVLGVAQDHHRLAYDPTAPT
FTFDVEWEDPGLDFEEVLFDGIKKCANKCDFCYVHQMPRGFRKSLYIMDDDYRLSFLY
GSFVTLTNLTESDINRILDEHLSPLYVSVHTANQELRQDLMKWWKLKVKDPQAVQIRT
MIERLEPIDLYTQIVLVPGRNDREHLDETIEYLASRPNVISAAVVPIGLTGHRRNLPD
VRTFTREEAQDTLARLNRWRRKFLNERGTRFVFPSDEFYLLAGEPLPSEEEYEGFPML
ENGVGMIRDFLTEGLPELPAALPAPRRVILGTGLLFADSLDRAVEPLRRIKGLEIEVR
AVENKTFGRVTTVAGLLTGRCFRHAIQPGEADLLIVPPTTLRYGTELMLDDTSLSDLR
AEFQMDVRAGGATLGELARVLLEGVQSSGHQWGMSAHAVKEGRGQA"
misc_feature 294928..296304
/locus_tag="Dgeo_0304"
/note="Fe-S oxidoreductase, related to NifB/MoaA family
[Energy production and conversion]; Region: COG1625"
/db_xref="CDD:31812"
misc_feature <294937..295086
/locus_tag="Dgeo_0304"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature 295654..296241
/locus_tag="Dgeo_0304"
/note="Protein of unknown function (DUF512); Region:
DUF512; pfam04459"
/db_xref="CDD:146883"
gene 296434..296829
/locus_tag="Dgeo_0305"
/db_xref="GeneID:4058029"
CDS 296434..296829
/locus_tag="Dgeo_0305"
/note="TIGRFAM: large conductance mechanosensitive channel
protein: (2.7e-26);
PFAM: large-conductance mechanosensitive channel:
(2.5e-35);
KEGG: dra:DR2422 large conductance mechanosensitive
channel, ev=2e-41, 64% identity"
/codon_start=1
/transl_table=11
/product="large conductance mechanosensitive channel
protein"
/protein_id="YP_603777.1"
/db_xref="GI:94984413"
/db_xref="InterPro:IPR001185"
/db_xref="GeneID:4058029"
/translation="MLRGFRNFILRGNVVDLAVGVVVGAAFTNVVNAFSSGFINPLIK
AITGGGPKVGGAFTVNGAVFDYGAFITAIINFLIVAAILYFLVVTPLNRLSERLKHDD
KPAPAEPSDEAKLLAEIRDELRRRPGTMS"
misc_feature 296434..296811
/locus_tag="Dgeo_0305"
/note="Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscL;
COG1970"
/db_xref="CDD:32153"
misc_feature 296434..296805
/locus_tag="Dgeo_0305"
/note="large-conductance mechanosensitive channel;
Reviewed; Region: mscL; PRK00567"
/db_xref="CDD:179069"
gene complement(297150..298364)
/locus_tag="Dgeo_0306"
/db_xref="GeneID:4058030"
CDS complement(297150..298364)
/locus_tag="Dgeo_0306"
/note="PFAM: von Willebrand factor, type A: (0.0015);
KEGG: dra:DR2391 hypothetical protein, ev=0.0, 92%
identity"
/codon_start=1
/transl_table=11
/product="von Willebrand factor A"
/protein_id="YP_603778.1"
/db_xref="GI:94984414"
/db_xref="InterPro:IPR002035"
/db_xref="GeneID:4058030"
/translation="MARVTRYSKFEGELDQLDSSELMQMIQEALLGKGMNDPYDPDPN
ARPSMDDLFDAILEALAERGMIPEEQLLEAMQADDVRQTALGQQIERLMDKLQQDGFI
RKEFDDQEEGQGGQGQSGEARFQLTDKSIDFLGYKSLRDLMGGLGKSSAGAHDTREYA
SGVEMTGELKNYEFGDTLNLDTTATLSNVISKGFEQLEEADLVIRQAEYSSSAATVVL
LDCSHSMILYGEDRFTPAKQVALALAHLIRTQYPGDTVKFVLFHDSAEEVPVSKLAQA
QIGPYHTNTAGGLRLAQQLLKRENKDMKQIVMITDGKPSALTLPDGRIYKNAYGLDPY
VLGATLREVANCRRAGIQVNTFMLARDPELVGFVRRVTEMTRGKAYFTTPYNIGQYVL
MDFMTNKTKMVN"
misc_feature complement(297162..>298364)
/locus_tag="Dgeo_0306"
/note="Uncharacterized protein with a von Willebrand
factor type A (vWA) domain [General function prediction
only]; Region: COG4867"
/db_xref="CDD:34476"
misc_feature complement(297222..297728)
/locus_tag="Dgeo_0306"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cd00198"
/db_xref="CDD:29222"
misc_feature complement(order(297432..297434,297516..297518,
297705..297707))
/locus_tag="Dgeo_0306"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29222"
gene 298816..299223
/locus_tag="Dgeo_0307"
/db_xref="GeneID:4058031"
CDS 298816..299223
/locus_tag="Dgeo_0307"
/note="KEGG: ttj:TTHB179 hypothetical protein, ev=4e-11,
40% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603779.1"
/db_xref="GI:94984415"
/db_xref="GeneID:4058031"
/translation="MKLKVFLPVLLVSGAALAQDTSPLQLVYDQVLIQTVTQNGKATE
KRTPGVTRVRPGEVLAQTVVARNTAGRALANIRIQLPVPKGMVYLAPDGSVPADVRTE
YSIDGGKTFAPAPLKKTVTVTENGKTQELHLNR"
misc_feature 298816..>299196
/locus_tag="Dgeo_0307"
/note="Domain of unknown function DUF11; Region: DUF11;
cl15273"
/db_xref="CDD:213134"
gene 299257..300348
/locus_tag="Dgeo_0308"
/db_xref="GeneID:4058032"
CDS 299257..300348
/locus_tag="Dgeo_0308"
/note="PFAM: transposase, IS4: (0.00017);
KEGG: tth:TTC1433 hypothetical protein, ev=5e-31, 33%
identity"
/codon_start=1
/transl_table=11
/product="transposase, IS4"
/protein_id="YP_603780.1"
/db_xref="GI:94984416"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4058032"
/translation="MSNSQILGERARILADQLLAVPTTVYQQRSLQAALHLFLDTGTK
TALHRAPLVSKSAVSRLLNNYDWDTAACWALLQRSQWEALLLAARRKRRACLRLSVDL
TSIEKTGKQLPFVRVYNEVHGIHLVVLFAEYRGLKFPVGYRVYRGKGTATPVSLALEL
LGEVPDAIRKRFRIRVLADSGFEAAVFLDGVRTLGFEFVVGVRATRRTTHPGQVTVAD
CEHGAWLELQNWPHDTLTLARVERGERTFFSVASELMTGDEVAAEGGKRWNIESFFKE
GKHQFSLQQFALRTARGLDRWVLLVFLAFTLTMLHRSPDLSLEEAAGLALTLALPFLR
LNVIFARLATDEEFLRQHGYSLKIARCNS"
misc_feature 299302..299928
/locus_tag="Dgeo_0308"
/note="DDE superfamily endonuclease; Region: DDE_5;
cl02413"
/db_xref="CDD:213106"
misc_feature 299626..300177
/locus_tag="Dgeo_0308"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
gene 300522..302810
/locus_tag="Dgeo_0309"
/db_xref="GeneID:4058033"
CDS 300522..302810
/locus_tag="Dgeo_0309"
/note="TIGRFAM: Protein of unknown function DUF11:
(1.2e-09);
KEGG: dra:DRB0037 hypothetical protein, ev=3e-57, 31%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603781.1"
/db_xref="GI:94984417"
/db_xref="InterPro:IPR001434"
/db_xref="GeneID:4058033"
/translation="MKVNAKILGLMAALAAGNALAAPTPNTTSTLAGTAITNVATATF
TDPATGNAAMPVSSNTVTTTVLPLPGFDLVYDDGTADGNTLANTPKVVTGAVPGQVIR
TDYDAVNNGNTPLTIILRANTTGGSSSAADVKYLDASGVELPKDGNGNYVLTLPAGSA
GVVKFTQQLTVPANAAAGATYGASPEGFVTGTGTGTGQNGIPTGSTLYENQTVSNGAV
VATPAQGADLQFVRVTTFQPNLTATPNVANPTNPVGPDGSTTVTPPALGTVNVPTVSS
GTPNRPNPTQPATGYPSTPSNPADPSGAAGTPIVPDVQGNQQTAYAKADNDNPSSNPA
IGQTNDQAGSADTIIFTNDLKNNGTSNDTVQLFPAGSDGALLTGTTFNAATGVFTLPD
GTKVRFLDPSTGQSLPVGTGATYPTVTVPAGKTVIYRTEVTLPDSSDAARVDPVAIKV
GADSLNDADLVADATTLDIVLQGAAQFGDSTDSVLGAVPTPAPQQVVVPGSNTTTNTD
TANATDNVAVFPMDVANMGAYNESYTLSATVTGLPAGATITYVDSSGAALPQNGTGNF
ITPVIAAGQEIKVYAVVTVPTGTAAGTYTISQKAVGNYSTITMTDLNDTIKVGAVGAV
AVAKFTQNSGTAAGATPQNGINNPANYTANNTTVLPGANIVYQIIGKNNYNAPVANFA
LNDTVPANTTFQSATLTIGGVAPSKVIYKIGNSTWTATAPAAGLAAGTVIAVAADADN
DGTPDALPSGATMELTFTVKVN"
misc_feature 302493..302630
/locus_tag="Dgeo_0309"
/note="Domain of unknown function DUF11; Region: DUF11;
cl15273"
/db_xref="CDD:213134"
gene 302927..305701
/locus_tag="Dgeo_0310"
/db_xref="GeneID:4058034"
CDS 302927..305701
/locus_tag="Dgeo_0310"
/note="PFAM: protein of unknown function DUF11: (3.7e-09);
KEGG: dra:DRB0039 hypothetical protein, ev=0.0, 50%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603782.1"
/db_xref="GI:94984418"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR001434"
/db_xref="GeneID:4058034"
/translation="MRHVALSLLLPGLLAGVVAVSGLVQASPALTPAGTEIINQATAT
FDPITPGEPDSAVSNVVRTTVQAVCAVSITPDGTVANPGQSASLPYGGSAVFSYILVN
AGNQTATYPVTARTEEGSAFTPTTHVYLDANGNGSVDPGEQEVETVTLAPEQSANLLL
VVEAASGQGTAYVNLVASCGGDGQVDSNNVSRMTVAPPPQLGVEKTFTPALIRPGGET
TVTVTTRNGGQGEAQAVVLTDPLEEQLAQGLAFVPGSAQVTAGTLEYTADGVTWQATE
PAGVRGVRVRAARLAPDETLTLTFRMAATPAAENHVIPNVATALANGLTARGSAQVDV
RYQPAVALGPSGVPEAPENTPADTQTKAFAVVGQQVCFDHTLKNTGDVRDDFRVTVTY
PQGQARATLLNANGQPLAEPLPLDPGQTALIRVCYDLTASGPLEALVTASGSRGTRNA
TRDLVAGVETGLPELVKTVSPAPTVSLSRGETVTYTLSVRNPYTRPLTGVVVSDPLPP
HVDFVPGRDTLSDGGTVSGAAGAQVATWNVGTLAPGETRTFRVTATVSDRAVDGETLN
NVFQLVSSELPAPTLSNEVKSPVWNAQLRILKTVSSPEVTPGDRLTYTLTIRNGSATT
DIVDAVVTDTPAAGLVYLPGTATLNGQPLADPEITNGVLRWQIPRLSAGQEVTLTYQA
RVGANTQGELTNSAEVVGVGGAARAVASNKSTATVKLRLLNFAPLNDILGMVYVDRNR
NGRFDAGLDTPVERARVILAGGRLVLTDAAGRYHFANVALGTQALRLDPNSVPYPPLS
VPQDGGLPGTRTVQVNGLTSVDFPLAPLAGEVAALRRTTLTAGPLRVEKTVTLTPQGY
AVTLRLQTTAALEGFELNDPLPPGATLKEGRKSWNGTLPVGETVLTYTFEFTGSPDAA
VTDPNVQWRS"
misc_feature 303479..303691
/locus_tag="Dgeo_0310"
/note="Domain of unknown function DUF11; Region: DUF11;
pfam01345"
/db_xref="CDD:110353"
misc_feature 304313..304639
/locus_tag="Dgeo_0310"
/note="fimbrial isopeptide formation D2 domain; Region:
RrgB_K2N_iso_D2; TIGR04226"
/db_xref="CDD:211949"
gene 305682..308873
/locus_tag="Dgeo_0311"
/db_xref="GeneID:4058035"
CDS 305682..308873
/locus_tag="Dgeo_0311"
/note="KEGG: dra:DR2392 hypothetical protein, ev=0.0, 61%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603783.1"
/db_xref="GI:94984419"
/db_xref="InterPro:IPR000183"
/db_xref="GeneID:4058035"
/translation="MSSGGPDVKSFSRRHLAALTVLLLLGGASAQLDTANPGVNAPTV
QRSSTVSLPFDAPTQAQELVLAQALPEGATLVPGSTRLDGQPLSDPRRGPSGTLYWTF
PAQGRGLLTYEVRHTAPLPALPEPALLARFPGERSEVLQGRIDVADLAAATPLDLAAV
AEMATENPGTIKLPLAGSVIRIRDRITVEVEAPLGETADLTVNGVPVGRDRIGTQVQD
EGRGVQRLTYVGVPLQTGPNVLRFGSDEVRVVRAGPTARVEVTPLNLTADGSTPIRLK
LRTLDAYGTPATQATLTLRTNLEPRTPDANPGEAGYQIKLEGGEGLLELQPQAAPTTL
KVEVLLGEQVLTSRYEITPDRSRVGVGVVSATLGLNGGKLADNFSVQARAYAETPLGE
GKLYVAADKDGLPTTDNPGVRSPVFGDASTEQTPLQGLDPVAAVYDHPAFRATYRQTA
LPISVLPVGEQLTALTVVTKSNPSVSAFVAGVPDDRVSERQLVPDGTRILRLPNAGLV
DSSETLEVVTLEARTGKELGRRTLTRNVDYIVDYPTGIVTLVRPLDRVDASFNDVRVL
ASYRLLGGNAGRHLASGVQVRQEGKNSSLGAAVVNLDGKTTFGVRGTFDNGLTRADTR
LAYSGGVQASADLSARLGDDTASLAARYQDTGYQGLAPFNVGLNVAANYTAAFGPNLR
GIFDGEYHDTPTTWEGSVTARGEARLDPFSVGGGFQYAFGDTSGLGVVGSVGYHRNPL
DVDVVHTQAVTGNLDTTTAILTRYRLTDKVTLGFANKITWGVGQVAALTLDTTLGNVN
YAVGYELPTASGEGNRARFGVSTALPLNGRTTLGLRGSALYDVAQGQAELAGGADLNY
KTVTLSATAGTDLTLKGGQFGVVLRGGVTGSLTPHLTLTADGLAEFGAGKNGQRLAFG
YAYRNRALSSLGYLRLVRGTLAAGTPELSSGLSAEYRQPTWAVRGGVDTRALLDDPGS
FTAQASLGGTYYLTERFGIGAWGRMLTQPATNTTQLGYGLEGSVRALPGTWLTAGYNF
AGFEGLPSAGMYTKQGAYLRLDLTLDETLGGRK"
misc_feature <307260..>307502
/locus_tag="Dgeo_0311"
/note="cell surface protein SprA; Region: surface_SprA;
TIGR04189"
/db_xref="CDD:211912"
gene 308870..311197
/locus_tag="Dgeo_0312"
/db_xref="GeneID:4058036"
CDS 308870..311197
/locus_tag="Dgeo_0312"
/note="PFAM: protein of unknown function DUF11: (0.00024);
KEGG: mmu:239611 mucin 19 Pfam: VWD TIL Cys_knot PROSITE:
VWFC_1 CTCK_1 ALA_RICH SER_RICH THR_RICH CTCK_2 VWFC_2,
ev=3e-27, 24% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603784.1"
/db_xref="GI:94984420"
/db_xref="InterPro:IPR001434"
/db_xref="GeneID:4058036"
/translation="MKRWIRALLPALGLLGLGTVTAQSVPLAQRVTETGTINYVTTGA
SFRANSTNSTTGASCLLTSSTAASVAGYSVANGAVSPARTADQTVPTGANVTKAYLYW
TASAGETGYNGGAPLIDNSVKFYVNGTNPPATNNVTASRTWSGSVAPSGGNAAVTRTQ
FGMGAFADVTSIVRSNPNAQFRMDDLTVFNASGSQTCNTSTMYGNWGLYIIYSLPSES
NKTLALFDGLQYIGGTGGYASAASASVTLSGLRVPNAAPGTEKIAKTTLLVSEGDAST
GASNDSLTLNTNLDAAFGVSNSLNPANDVFNGSITVGPTDGGTATGYTSSTSPGVVGG
LDLDTFDLSNRVSSGTTSLTATVDSASGELLMLYSAVLMATTTTADLSVTKSAPATQQ
GAGTLTYTITASNAGPHEAYNVVVSDPLPAGVTFVSASGGGSYDAATRRVTWTIGKFL
ANTSQTYTVAVTVPNAAATYPNTVSVSSGSFDPVSANNSATASTVVTPTPDLTLTKTG
PQYARPSTVANTDPTAGPVVAAQDSFISYTLTVNTANASATGTTTVTDTLPAGLSWAG
GTSNYTAGPGTWTCGVSGQTITCTTPGPIVVGTPQTITLQNVRVGPGTAAGATFTNTA
TVSNPNEAAADNNAGNTGTATTRLILTQVSKQVRTLPGGTFGTSASVRPGDLLEYCID
TRNLGGADLANYVLSDTLNRNGRSLTSVTTDPAYGGKAIKWTRTPASGTATSSNATAA
AGDDAGTLTDTSLSVNLGTLAAGETVRTCFQVQVR"
misc_feature 309968..310159
/locus_tag="Dgeo_0312"
/note="Domain of unknown function DUF11; Region: DUF11;
pfam01345"
/db_xref="CDD:110353"
gene 311246..312199
/locus_tag="Dgeo_0313"
/db_xref="GeneID:4058037"
CDS 311246..312199
/locus_tag="Dgeo_0313"
/note="PFAM: protein of unknown function DUF6,
transmembrane: (1.5e-15);
KEGG: dra:DR2393 hypothetical protein, ev=1e-112, 71%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603785.1"
/db_xref="GI:94984421"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4058037"
/translation="MPWPGRLTIPFVSSHTRGLLLLVLVTAIWGSTFAVVKELGTQLP
PPVLIAWRFLIAGVVLWPMLALTRSKEKSRPAPRSRPLWRDGLILGAWLIAGYGTQTV
ALQTTGANRAAFFTALSVVLVPVWLTFAQRRPLPMVLWLALPLAVTGLALLSWEGGAL
VVGDVWALACAVTYAGFIIALERAASRHEVLRFTFAQLAAVTLLAWVWAVLAAPAQLW
PPAAAWGPLLYLGIAATALTTLLQTVGQRAVSAAEASLIYALEPVTAGLFSFLLIGER
IGARGALGGLLVVAATILSQRAGSQPHPETPTPQVEGHEVS"
misc_feature 311327..311710
/locus_tag="Dgeo_0313"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(312196..312777)
/locus_tag="Dgeo_0314"
/db_xref="GeneID:4058038"
CDS complement(312196..312777)
/locus_tag="Dgeo_0314"
/note="KEGG: dra:DR2018 hypothetical protein, ev=3e-25,
43% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603786.1"
/db_xref="GI:94984422"
/db_xref="GeneID:4058038"
/translation="MFSLDGCGRKTAASPTIRAPAGFCQSASARLLGVITWFDALLVT
LWAAVTALGARRGLSGLLWGSGSIVVCLLANVLSRAALPALALAGLLGTGLAVLTRRL
LPTPLDHPLHLAAGALGGFALGAVLVATLTLGFPIELQVGPQGRTGVYPSTSLPPVLY
AAVNGSALKGSLMRVWDASPLLQTLIVPDQTQR"
gene 312778..313422
/locus_tag="Dgeo_0315"
/db_xref="GeneID:4058039"
CDS 312778..313422
/locus_tag="Dgeo_0315"
/note="PFAM: regulatory protein, LuxR: (3.4e-19) response
regulator receiver: (1.1e-39) Sigma-70, region 4 type 2:
(0.00042);
KEGG: dra:DR0432 DNA-binding response regulator,
ev=1e-108, 94% identity"
/codon_start=1
/transl_table=11
/product="LuxR family transcriptional regulator"
/protein_id="YP_603787.1"
/db_xref="GI:94984423"
/db_xref="InterPro:IPR000792"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR013249"
/db_xref="GeneID:4058039"
/translation="MIRVLLVDDHALFRQGLRSLLESEGMRVIGEAANGREAIRYAAD
THPDVILMDIQMPELDGVKATQSILEIDPRARVIMITMYRQDRYVFEAVKAGARGYVL
KDADAATLLDAIRRVASGEALLDADLAQNVLDDFRDKREELPSEKHADLNERETMILK
LLAQGFSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGIANLE"
misc_feature 312781..313416
/locus_tag="Dgeo_0315"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature 312790..313080
/locus_tag="Dgeo_0315"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(312799..312804,312934..312936,312958..312960,
313018..313020,313075..313077)
/locus_tag="Dgeo_0315"
/note="active site"
/db_xref="CDD:29071"
misc_feature 312934..312936
/locus_tag="Dgeo_0315"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(312943..312948,312952..312960)
/locus_tag="Dgeo_0315"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 313228..313398
/locus_tag="Dgeo_0315"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(313231..313239,313276..313284,313306..313311,
313315..313320,313324..313338,313369..313371)
/locus_tag="Dgeo_0315"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(313264..313266,313270..313272,313276..313278,
313369..313377,313384..313386,313393..313398)
/locus_tag="Dgeo_0315"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 313628..314575
/locus_tag="Dgeo_0316"
/db_xref="GeneID:4058040"
CDS 313628..314575
/locus_tag="Dgeo_0316"
/note="PFAM: beta-lactamase: (0.00059);
KEGG: dra:DR0433 beta-lactamase, , ev=1e-100, 69%
identity"
/codon_start=1
/transl_table=11
/product="beta-lactamase"
/protein_id="YP_603788.1"
/db_xref="GI:94984424"
/db_xref="InterPro:IPR001466"
/db_xref="GeneID:4058040"
/translation="MSAPRRAGGRAALLYPAPGGDRSPLCGPGGTGPPRVTFDLVADL
RSRGYVGEVGVLITDLAGRELYALNPDRVFPAASTIKVPLLLLALSEAQAGRLDLSGR
VTLRAEDRVPGAGVLHELMPGLAPTWQDLLTLMIVVSDNTATNLVIERLGLDRVNDWL
GERGLSGTQLVGLLQLPLERQNAAQRRGERNRTTARDQVALLGALVRGELLDRSHTGL
ALSILERQQLREILGRHVPCDAEGKPLYRVASKSGELMGIHHDVGVLFTPRPLIAAVL
SQGGLDPREYPDNRDVALLAGALWPLLGALGILDTTGDI"
misc_feature 313760..314503
/locus_tag="Dgeo_0316"
/note="Beta-lactamase class A [Defense mechanisms];
Region: PenP; COG2367"
/db_xref="CDD:32514"
misc_feature 313805..314452
/locus_tag="Dgeo_0316"
/note="Beta-lactamase enzyme family; Region:
Beta-lactamase2; pfam13354"
/db_xref="CDD:205534"
gene 314760..315617
/locus_tag="Dgeo_0317"
/db_xref="GeneID:4058041"
CDS 314760..315617
/locus_tag="Dgeo_0317"
/note="PFAM: cytochrome c, class I: (4.8e-08);
KEGG: dra:DR0434 cytochrome c6, , ev=1e-123, 73% identity"
/codon_start=1
/transl_table=11
/product="cytochrome c, class I"
/protein_id="YP_603789.1"
/db_xref="GI:94984425"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR008168"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4058041"
/translation="MERNDAVMPWVAIVCAAIMWIILLFLFNKETAPEPVVVDPAVVA
SINQEWPTLGKQVFTSAGCVACHGAEGQGGAGPKLAGNEKILKDPVYVYTIVTKGKGG
MPAFGDKLSEKEIYAVANYVLHSWGNSIPEPLTPATVAAGQTKVDPAVLKNRSRFVPE
DIKLPEIFLATFVMVLLTYGLIGLYSVWAEGTELHPGIHKARSTPLAMTAMVVTLALS
LLFSVLFVRQMVADYAAWANKEMPSVTAEGFYAAMILFTIAVAIGLYKKFFMDDEVLV
EDASGEFPW"
misc_feature 314910..315125
/locus_tag="Dgeo_0317"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
misc_feature <314919..315197
/locus_tag="Dgeo_0317"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
gene 315643..316305
/locus_tag="Dgeo_0318"
/db_xref="GeneID:4057867"
CDS 315643..316305
/locus_tag="Dgeo_0318"
/note="PFAM: Rieske [2Fe-2S] region: (2.1e-11);
KEGG: dra:DR0435 cytochrome complex iron-sulfur subunit, ,
ev=3e-53, 56% identity"
/codon_start=1
/transl_table=11
/product="Rieske (2Fe-2S) protein"
/protein_id="YP_603790.1"
/db_xref="GI:94984426"
/db_xref="InterPro:IPR005805"
/db_xref="InterPro:IPR005806"
/db_xref="GeneID:4057867"
/translation="MTRYKRQDPEISRRKFINVAMGTTAAVGGISLISVLGTANPVFR
LTRDKMPPLKGDILVHAGGDTEGQPVKISELGTKLVRAWPMGKDEQGQNLIRKGDPNN
LLVLYRFPPGQLKAPTNLEATIDGQTVAYSDICTHAGCSVGDNDQGPGMKCPCHSGQY
DPTRGCIVVGGPPPRPLAQLPIAAQGDNIVVTDFFLTMPYPYIHESEWEAFKKTVEEQ
LT"
misc_feature 315667..316251
/locus_tag="Dgeo_0318"
/note="Rieske Fe-S protein [Energy production and
conversion]; Region: QcrA; COG0723"
/db_xref="CDD:31067"
misc_feature <316015..316215
/locus_tag="Dgeo_0318"
/note="Rieske domain; a [2Fe-2S] cluster binding domain
commonly found in Rieske non-heme iron oxygenase (RO)
systems such as naphthalene and biphenyl dioxygenases, as
well as in plant/cyanobacterial chloroplast b6f and
mitochondrial cytochrome bc(1) complexes; Region: Rieske;
cd03467"
/db_xref="CDD:58538"
misc_feature order(316045..316047,316051..316056,316099..316101,
316105..316110,316114..316116,316120..316122)
/locus_tag="Dgeo_0318"
/note="iron-sulfur cluster [ion binding]; other site"
/db_xref="CDD:58538"
misc_feature order(316045..316047,316051..316056,316099..316101,
316108..316110,316114..316116)
/locus_tag="Dgeo_0318"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58538"
gene 316302..317615
/locus_tag="Dgeo_0319"
/db_xref="GeneID:4057868"
CDS 316302..317615
/locus_tag="Dgeo_0319"
/note="PFAM: cytochrome b/b6-like: (4e-17);
KEGG: dra:DR0436 ubiquinol-cytochrome c reductase
cytochrome b subunit, ev=0.0, 81% identity"
/codon_start=1
/transl_table=11
/product="cytochrome b/b6-like protein"
/protein_id="YP_603791.1"
/db_xref="GI:94984427"
/db_xref="InterPro:IPR005797"
/db_xref="InterPro:IPR005798"
/db_xref="GeneID:4057868"
/translation="MNQWLDERLHLSRLNDKFLRKAFPVHHSFFLGEITLFSLIILIL
TGILLALAYEPSNSMVVNSFDPGTAAKPNMIPAAYHSALKINAMPFGDMLRRIHHWTA
NIMVAAAVVHMMRIYFTGAFKKPREINWWIGLLLLIFAALTAVTGYALPYDNYAYNTL
KVIYGIAASIPWVGEWVAQAAFAGRFPGDGLIPRVYGYHIMLLPAILLALTGAHLLIM
IKQKHTQPQYAKRIAYKKIVGVPLMTQQTPIMLLLAVLFAAIIVLFSAFIPVHPVEFF
GPPSTTPINNIKPDWYLLWVFGALAIIPSFEFNFLGGVIGSEFTGAIILPTVIILAMF
AVPMLDRSRDNMYYAENPTNHPVRLAAGIAFLALLIVWSVAGYKPELISANILTTANA
NTVLWIMTFLVPAVAYFVTLAIVRGIRSLREADERDRLAHAHADD"
misc_feature 316302..317546
/locus_tag="Dgeo_0319"
/note="Cytochrome b subunit of the bc complex [Energy
production and conversion]; Region: QcrB; COG1290"
/db_xref="CDD:31481"
misc_feature order(316578..316580,316587..316592,316599..316604,
316608..316613,316617..316622,316629..316631,
316650..316667,316677..316682,316689..316694,
316701..316703,316710..316715,316743..316745,
316755..316775,316785..316790,316812..316814)
/locus_tag="Dgeo_0319"
/note="intrachain domain interface; other site"
/db_xref="CDD:29347"
misc_feature order(316584..316586,316593..316598,316605..316607,
316728..316733,316740..316745,316749..316754,
316896..316901,316911..316913)
/locus_tag="Dgeo_0319"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature 316608..317135
/locus_tag="Dgeo_0319"
/note="Cytochrome b(N-terminal)/b6/petB; Region:
Cytochrom_B_N_2; pfam13631"
/db_xref="CDD:205808"
misc_feature order(316614..316616,316626..316628,316635..316640,
316644..316646,316686..316691,316698..316703,
316707..316712,316932..316934,316941..316946,
316953..316955)
/locus_tag="Dgeo_0319"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(316713..316715,316722..316727,316734..316739,
316776..316778,316785..316790,316800..316802,
316884..316886,316893..316895)
/locus_tag="Dgeo_0319"
/note="Qo binding site; other site"
/db_xref="CDD:29347"
misc_feature 317136..>317327
/locus_tag="Dgeo_0319"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cl00193"
/db_xref="CDD:206890"
gene 317684..317881
/locus_tag="Dgeo_0320"
/db_xref="GeneID:4057869"
CDS 317684..317881
/locus_tag="Dgeo_0320"
/note="KEGG: dra:DR0437 hypothetical protein, ev=7e-07,
55% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603792.1"
/db_xref="GI:94984428"
/db_xref="GeneID:4057869"
/translation="MPELLALYLARQARTLGLDAQNVEDADLETLRTFAQAALSELAA
LGLVAGEEEVGCWAAPRPTGH"
gene complement(317922..318872)
/locus_tag="Dgeo_0321"
/db_xref="GeneID:4057870"
CDS complement(317922..318872)
/locus_tag="Dgeo_0321"
/note="PFAM: mannose-6-phosphate isomerase, type I:
(1.3e-09);
KEGG: dra:DRA0048 mannose-6-phosphate isomerase, ,
ev=7e-94, 58% identity"
/codon_start=1
/transl_table=11
/product="mannose-6-phosphate isomerase"
/protein_id="YP_603793.1"
/db_xref="GI:94984429"
/db_xref="InterPro:IPR001250"
/db_xref="InterPro:IPR007113"
/db_xref="GeneID:4057870"
/translation="MMSLMADLFTAPLRLQPQLTERVWGGRRLAPQAPSPIGEAWVVY
EHNVVQDGPHAGRSLAELSAAAPRELLGDRAVGTRFPLLIKLLDCAEWLSVQVHPDDA
QARALAGEGQLGKTEAWHLLEAAPGAELIAGVRPGTAPETLREAILAGRVMDHAERHS
VQAGDTVLVPAGTLHALGPGLLLYEVQQTSDLTYRVYDWDRPASAGRALHLHESAKVV
TAARAIPRPTPPGRPGEVQELARCAYFVLERLTGGPQPLSLETCGESFHALTLTAGEA
RLTVGADTVRLGTLETVVIPAAAGTYTLAGDFQALRSRLP"
misc_feature complement(317934..318839)
/locus_tag="Dgeo_0321"
/note="Phosphomannose isomerase [Carbohydrate transport
and metabolism]; Region: ManA; COG1482"
/db_xref="CDD:31671"
misc_feature complement(317940..318833)
/locus_tag="Dgeo_0321"
/note="Phosphomannose isomerase type I; Region: PMI_typeI;
cl15429"
/db_xref="CDD:200850"
gene complement(318950..319198)
/locus_tag="Dgeo_0322"
/db_xref="GeneID:4057871"
CDS complement(318950..319198)
/locus_tag="Dgeo_0322"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603794.1"
/db_xref="GI:94984430"
/db_xref="GeneID:4057871"
/translation="MTNPYAEWFEQLRAEYGEQLKAMPLPDGLPEYLRDLIEARDEEA
ILFMIKLAWQFGAQVGYAAGARQGQAARPTTRPGHVQA"
gene 319325..319747
/locus_tag="Dgeo_0323"
/db_xref="GeneID:4057872"
CDS 319325..319747
/locus_tag="Dgeo_0323"
/note="PFAM: HesB/YadR/YfhF: (1.8e-33);
KEGG: dra:DR0439 HesB/YadR/YfhF family protein, ev=5e-62,
84% identity"
/codon_start=1
/transl_table=11
/product="HesB/YadR/YfhF"
/protein_id="YP_603795.1"
/db_xref="GI:94984431"
/db_xref="InterPro:IPR000361"
/db_xref="GeneID:4057872"
/translation="MTATSLPEPRGDVPAKAISISEFGAQKALAILAQSGKENAGVRV
FIKSGGCSGYQYGMAIDDRELEGDTIVVDRGVKLLVDRMSLPLLRGSEVDFVENMMGG
GFTVHNPNATSSCGCGHSFRTDGAQSPEGQGSGGCGSF"
misc_feature 319382..319693
/locus_tag="Dgeo_0323"
/note="Iron-sulfur cluster assembly accessory protein;
Region: TIGR00049"
/db_xref="CDD:161681"
gene 319926..321686
/locus_tag="Dgeo_0324"
/db_xref="GeneID:4057873"
CDS 319926..321686
/locus_tag="Dgeo_0324"
/note="PFAM: extracellular solute-binding protein, family
5: (3.6e-56);
KEGG: ttj:TTHA1634 peptide ABC transporter peptide-binding
protein, ev=1e-134, 44% identity"
/codon_start=1
/transl_table=11
/product="extracellular solute-binding protein"
/protein_id="YP_603796.1"
/db_xref="GI:94984432"
/db_xref="InterPro:IPR000914"
/db_xref="GeneID:4057873"
/translation="MKKTLALTAFLFGAALAGPANNSLVVGTSQEPPNIYDPWVTNNL
AITTEINGYMGAALTNFDDDGNLFPEIATAVPTLANGGYKVVKNAAGDVVRNSVTYTI
RKDAKWSDGKPISIADFQFWLKVQNDDRVPVPDRDPWNRAKITPVDSDTFTVTFDPPY
LFADLNPPGLAPVHVMGAAWNAFDTATKNQKDAKAVNEEWKKFISSFTTARNLPKVVA
GPFKPTAWRPGNSLTMTRNPNYWRKPQGGEDKYVQTVTYRFIPNTNTLKVNVLSGQLD
AISSVSLTFDQALDLQKSERGRFKTYFVPGAVWEHIDVNTRSQKAKDLDLDDPRMRQA
LLLSIDRDGLVKALFQGKQPVSNSFVNPLSKLYKKDVRDYNQNVAQAKQLFAQLGWTL
GSDGILQKGGKKLSLMFSTTAGNTTRERVQQILQDQWKKVGVQVNIQNYPSSVFFGPD
MLSKGQEGKWDLAMYAWTANPIFEQGDLFKGEGIPTAANGYAGQNYSGWSDPEYNKLY
KQAQTEFDLNQRIKLFDRMQTIWNAAVPALPLYYRANPYTKVPGLLNYTFSAYTRYPS
WNAYQIGWASRGAVEVNQQK"
misc_feature 319992..321593
/locus_tag="Dgeo_0324"
/note="The substrate-binding component of ABC-type
thermophilic oligopeptide-binding protein Hb8-like import
systems, contains the type 2 periplasmic binding fold;
Region: PBP2_thermophilic_Hb8_like; cd08513"
/db_xref="CDD:173878"
misc_feature order(320076..320078,321177..321179,321264..321266,
321318..321326,321348..321350)
/locus_tag="Dgeo_0324"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:173878"
misc_feature 320214..321341
/locus_tag="Dgeo_0324"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
misc_feature order(320715..320717,320727..320729,320739..320741,
320961..320966,321183..321185,321192..321197,
321204..321206)
/locus_tag="Dgeo_0324"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173878"
gene 321797..322792
/locus_tag="Dgeo_0325"
/db_xref="GeneID:4057874"
CDS 321797..322792
/locus_tag="Dgeo_0325"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component: (3.6e-43);
KEGG: ttj:TTHA1633 peptide ABC transporter permease,
ev=1e-104, 58% identity"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_603797.1"
/db_xref="GI:94984433"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4057874"
/translation="MGTYALRRLLQMIPLLLIISLVIYALTALQPGDPVDQLTFGNPL
ITPDDIARLKAAYGLDQPWYTRYLFWLRQALHGDLGYSQDFNIPAVQFVFQQRMPNTL
LLTVPALILSTLIAVPLGIYSAIRQYSLPDYVLTFLSFLAFSAPVFWVGAMAMYFFAI
YLPGVTGGLLSLPPGGLGGDLPADAGWWALALDKLKYLLLPLSILMLREIAVTTRFMR
ASMLEVLNQDFIRTARAKGLPGRKVLYKHALRNALVPIVTIMGLSIPGLFGGAVITET
VFSWPGMGKAILDALVSKDFNVVMVSLMLLSLLTVVFQLLTDLAYAVIDPRIRYS"
misc_feature 321860..322789
/locus_tag="Dgeo_0325"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 322088..322648
/locus_tag="Dgeo_0325"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(322136..322141,322148..322153,322166..322168,
322199..322210,322214..322243,322250..322255,
322259..322261,322379..322384,322427..322429,
322433..322435,322442..322447,322451..322453,
322463..322468,322475..322477,322526..322528,
322568..322573,322580..322582,322601..322612,
322619..322624)
/locus_tag="Dgeo_0325"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(322217..322261,322601..322618)
/locus_tag="Dgeo_0325"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(322259..322261,322364..322366,322619..322621)
/locus_tag="Dgeo_0325"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(322478..322516,322532..322537,322547..322549)
/locus_tag="Dgeo_0325"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 322803..323744
/locus_tag="Dgeo_0326"
/db_xref="GeneID:4057875"
CDS 322803..323744
/locus_tag="Dgeo_0326"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component: (3.1e-42);
KEGG: bld:BLi01228 oligopeptide ABC transporter
(permease); RBL00621, ev=6e-72, 45% identity"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_603798.1"
/db_xref="GI:94984434"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4057875"
/translation="MTTTAPSPTAAPAPTRSRSTFQIALRRLLRHRAAMVSLGVIVLL
VLMAIFAPLLAPYDPNAQNLSGIYAPPSAQHLLGQDDLGRDLLSRVIYGSRVSLMVGF
SVAVISILIGTLLGLLAGFFGGLTDSLISRFIEFMLSLPTLPLLLVISGLLVSTDAPL
VVNLRSALGASASVIIIITIFSLLGWMGTARLVRGEVLRLKNLEYVDAARALGANNNR
IMWRHLVPNLFAVIIVQATLDVGTAILSEAALSFLGFGIQPPVSTWGNMLSNAQEVVL
QYPWIPLYPGLAILITVLAFNFLGDGLRDAFDPKSRL"
misc_feature 322905..323738
/locus_tag="Dgeo_0326"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature <322905..323018
/locus_tag="Dgeo_0326"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature <323280..323681
/locus_tag="Dgeo_0326"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(323337..323339,323553..323555,323592..323594,
323601..323603,323631..323633)
/locus_tag="Dgeo_0326"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(323352..323357,323361..323363,323367..323369,
323376..323381,323385..323387,323397..323402,
323409..323411,323460..323462,323502..323507,
323514..323516,323535..323546,323553..323558,
323598..323603,323631..323636,323643..323648,
323652..323657,323664..323669,323676..323681)
/locus_tag="Dgeo_0326"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(323412..323450,323466..323471,323481..323483)
/locus_tag="Dgeo_0326"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 323826..324332
/locus_tag="Dgeo_0327"
/db_xref="GeneID:4057876"
CDS 323826..324332
/locus_tag="Dgeo_0327"
/note="PFAM: Crossover junction endodeoxyribonuclease
RuvC: (7.4e-37);
KEGG: dra:DR0440 Holliday junction resolvase, ev=3e-81,
90% identity"
/codon_start=1
/transl_table=11
/product="crossover junction endodeoxyribonuclease RuvC"
/protein_id="YP_603799.1"
/db_xref="GI:94984435"
/db_xref="InterPro:IPR002176"
/db_xref="GeneID:4057876"
/translation="MIVLGVDPGLANLGLGLVEGDVRKARHLYHVCLTTESAWLMPRR
LQYLHEEVARLLAEYRPDAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAY
GPMQVKRSLVGTGRADKEQIIYMVKATLGIRELFNNHAADALALALTHLAHQPMRAAS
TRLAQKSA"
misc_feature 323829..324239
/locus_tag="Dgeo_0327"
/note="Holliday junction resolvases (HJRs) are
endonucleases that specifically resolve Holliday junction
DNA intermediates during homologous recombination. HJR's
occur in archaea, bacteria, and in the mitochondria of
certain fungi, however this CD includes...; Region:
RuvC_resolvase; cd00529"
/db_xref="CDD:29627"
misc_feature order(323844..323846,324024..324026)
/locus_tag="Dgeo_0327"
/note="active site"
/db_xref="CDD:29627"
misc_feature order(323856..323858,323925..323927,324042..324044,
324063..324065,324138..324140,324147..324149,
324180..324182)
/locus_tag="Dgeo_0327"
/note="putative DNA-binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29627"
misc_feature order(323961..323963,323970..323972,324033..324035,
324048..324050,324057..324062,324069..324074,
324078..324083,324090..324092,324102..324107)
/locus_tag="Dgeo_0327"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29627"
gene 324336..324986
/locus_tag="Dgeo_0328"
/db_xref="GeneID:4057877"
CDS 324336..324986
/locus_tag="Dgeo_0328"
/note="KEGG: dra:DR0441 hypothetical protein, ev=6e-49,
62% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603800.1"
/db_xref="GI:94984436"
/db_xref="GeneID:4057877"
/translation="MSLALPLVLSVLLTFAWLWVFVRRDRHPEPAWLLARTFGWGLLA
WAVSAAFEGSIDRLGFPLLVILLSAVVEESSKFLAASTAASEHAFDEPMDGLVYAVTA
ALGFALLENLTYILSFGRDAVTWHALLTTLAHALFSAPQGYALGGRHLRGGRWWRSRG
LLLSITLHVVFNGLLTGQAGGLQLLALGAVVLLMVILAGRYYLHFETHARDHPRSP"
misc_feature 324375..>324692
/locus_tag="Dgeo_0328"
/note="Membrane proteinase, regulator of anti-sigma factor
[Posttranslational modification, protein turnover,
chaperones]; Region: prsW; COG2339"
/db_xref="CDD:32489"
gene complement(324989..325663)
/locus_tag="Dgeo_0329"
/db_xref="GeneID:4057878"
CDS complement(324989..325663)
/locus_tag="Dgeo_0329"
/note="TIGRFAM: molybdopterin converting factor, subunit
1: (2.1e-31);
PFAM: molybdopterin biosynthesis MoaE: (2.5e-39)
thiamineS: (2.3e-22);
KEGG: dra:DR2607 molybdenum cofactor biosynthesis protein
D/E, ev=5e-84, 66% identity"
/codon_start=1
/transl_table=11
/product="molybdopterin converting factor subunit 1"
/protein_id="YP_603801.1"
/db_xref="GI:94984437"
/db_xref="InterPro:IPR003448"
/db_xref="InterPro:IPR003749"
/db_xref="InterPro:IPR010034"
/db_xref="InterPro:IPR010916"
/db_xref="GeneID:4057878"
/translation="MQVNVVFFARLKHETGLEAATIEAPAGATVRELAAQVEQTYGLS
LRGCMVAVNETYAQPEQVLRDGDEVAFLPPVAGGAEEDTCCEVVTSPLLLTEAETFLV
RPQYGAQAYFVGTVRSPNQGKRVEYIEYEGYTPMAEKVMREAAEQARVQYGELRVLVR
HRVGRLHPGEASILIGVATPHRRAALEACEFLIEYLKVHLPVWKHEANEDGQHWVEGQ
TGNPTL"
misc_feature complement(325430..325657)
/locus_tag="Dgeo_0329"
/note="Ubiquitin domain of MoaD-like proteins; Region:
MoaD; cd00754"
/db_xref="CDD:176354"
misc_feature complement(order(325430..325432,325439..325447,
325460..325462,325505..325507,325625..325630,
325634..325642))
/locus_tag="Dgeo_0329"
/note="MoaE interaction surface [polypeptide binding];
other site"
/db_xref="CDD:176354"
misc_feature complement(order(325430..325432,325439..325441,
325445..325447,325625..325630,325637..325642))
/locus_tag="Dgeo_0329"
/note="MoeB interaction surface [polypeptide binding];
other site"
/db_xref="CDD:176354"
misc_feature complement(325430..325432)
/locus_tag="Dgeo_0329"
/note="thiocarboxylated glycine; other site"
/db_xref="CDD:176354"
misc_feature complement(325019..325384)
/locus_tag="Dgeo_0329"
/note="MoaE family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (Moco), an
essential cofactor for a diverse group of redox enzymes.
Moco biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and...; Region: MoaE;
cd00756"
/db_xref="CDD:58647"
misc_feature complement(order(325082..325084,325094..325096,
325118..325120,325124..325126,325151..325153,
325313..325315,325319..325321,325325..325339,
325343..325345,325358..325360,325370..325372))
/locus_tag="Dgeo_0329"
/note="MoaE homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:58647"
misc_feature complement(order(325022..325024,325052..325060,
325064..325066,325070..325075,325181..325183,
325235..325237,325247..325249,325256..325258,
325265..325267,325271..325273))
/locus_tag="Dgeo_0329"
/note="MoaD interaction [polypeptide binding]; other site"
/db_xref="CDD:58647"
misc_feature complement(order(325052..325054,325073..325075))
/locus_tag="Dgeo_0329"
/note="active site residues [active]"
/db_xref="CDD:58647"
gene 325852..328741
/locus_tag="Dgeo_R0008"
/db_xref="GeneID:4057694"
rRNA 325852..328741
/locus_tag="Dgeo_R0008"
/product="23S ribosomal RNA"
/db_xref="GeneID:4057694"
gene 328825..328941
/locus_tag="Dgeo_R0009"
/db_xref="GeneID:4057695"
rRNA 328825..328941
/locus_tag="Dgeo_R0009"
/product="5S ribosomal RNA"
/db_xref="GeneID:4057695"
gene 328951..329026
/locus_tag="Dgeo_R0010"
/note="tRNA-Gly1"
/db_xref="GeneID:4057696"
tRNA 328951..329026
/locus_tag="Dgeo_R0010"
/product="tRNA-Gly"
/db_xref="GeneID:4057696"
gene 329158..330324
/gene="tgt"
/locus_tag="Dgeo_0330"
/db_xref="GeneID:4057879"
CDS 329158..330324
/gene="tgt"
/locus_tag="Dgeo_0330"
/note="Exchanges the guanine residue with
7-aminomethyl-7-deazaguanine in tRNAs with GU(N)
anticodons (tRNA-Asp, -Asn, -His and -Tyr)"
/codon_start=1
/transl_table=11
/product="queuine tRNA-ribosyltransferase"
/protein_id="YP_603802.1"
/db_xref="GI:94984438"
/db_xref="InterPro:IPR002363"
/db_xref="InterPro:IPR002616"
/db_xref="InterPro:IPR004803"
/db_xref="GeneID:4057879"
/translation="MFEFDIQYRDGQARVATFQTPHGQVRTPMFMPVGTQGTVKGLSP
QELIEIGSQMILGNTYHLMLRPGEQLVAAHGGLPGFTAYPGPFLTDSGGFQVMSLGHM
RKITEEGVTFKSHLDGSLVSLTPERSIAVQEALGADVIMAFDECPPYPAERDYIRRSL
ERTARWLERCYAVKTREDQALFAIVQGGIDPDLRQLSLDLTLPFQTPGFAIGGLAVGE
SKEEMYPAVAFTAKRLPEGKPRYLMGVGHPEDLVAGIALGIDMFDCVYPTRTGRFGYA
LTDDGRLNMNGSAPRTQLQPLDPECDCYACRHYSRAYLAHLIRAEEMLAPRMLSLHNL
RYLHRLVERARTAIMQGAFQAWAQAWAQRYFRGAVPGWFRQVLATGAQVEIQTH"
misc_feature 329158..330204
/gene="tgt"
/locus_tag="Dgeo_0330"
/note="queuine tRNA-ribosyltransferase; Provisional;
Region: tgt; PRK00112"
/db_xref="CDD:178873"
misc_feature 329167..330273
/gene="tgt"
/locus_tag="Dgeo_0330"
/note="Queuine/archaeosine tRNA-ribosyltransferase
[Translation, ribosomal structure and biogenesis]; Region:
Tgt; COG0343"
/db_xref="CDD:30691"
gene 330767..333607
/locus_tag="Dgeo_0331"
/db_xref="GeneID:4057880"
CDS 330767..333607
/locus_tag="Dgeo_0331"
/note="PFAM: S-layer-like region: (5e-20);
KEGG: ttj:TTHA1893 S-layer protein precursor (P100
protein), ev=1e-135, 36% identity"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_603803.1"
/db_xref="GI:94984439"
/db_xref="InterPro:IPR001119"
/db_xref="GeneID:4057880"
/translation="MKKSLFVLTAALAFGVAAAQTAAPAPANPTPASASAPQVPTLTD
VPAGHWAKDAIDRLVSRGIILGYPDGTYRGTQNLTRYEAAVIIARLLDQIRTGEVNPG
SIAPEDLTALQNAIQELAADLTALGVRVSDLEENAVSRDDFARLEARVEELATANGDA
AAVAGLKSQIDDLTSRVDELSSNYDALRADVDDNASSIAALNDLTVLLNQDILNLQDR
VSAVESAQADFVQRSDFDNLTGRVGAIDTRVTNLEKAPKFSVGGSISATYGRLGLISG
TTNFDVDRLTRQTFADGVFSTGVDCPGGVYAVSGNAVSCTDTDNTLSDVGVSFGVKAS
NLTTANGQIVVNNAALNFDVSNEFSLGTPGNVPTPSVYLSSASADGTISGQKFDVRYE
AYNSKFKFNDYLFANDNDTSNAIYRRGVVANITATQLPLQPKITVVAGNAAVNTGLKD
SNTGGAQDPILVGSYYGVRASVNPGGVGTVGLSFAQNTGNRTAFGVDYDLGFGDKNAE
GNSPFTLTGAGVISIPNTPANFILGGGSFQNAWNNGDKAFFTEGKADLSVVKFGANFR
AIMPAYAKGVAGMSANDSGYYSGAQGYKSSMPYAPDQVGYGGGLGTNLGPVALAAFGD
SYVPYFGGDRNTSFGVSAGVKLAGFKLVGFYNRATLNNNLIHADLNYAGPGGGGFSYN
LTSPYMDVADVPFAYSSTYGAVLNHDGAASNALVKGLNFTTAYARFYDDNVNDFQVYG
NYSGTFAGLTIQPFARYHLLTTPNDAAVTDNGATVQTYNTVKYGVKLSTQPLAAVPLQ
PSVFFNVANRITNLGRNVQVNNGTATELFGQTGITLNQFLVPNLKASLGYAYYQGFNV
STTATGSSASGASATYSAAADRFYSSPFSGGGDPYSGDNLGTANGKAQGVFAQVAWNG
LAANYGVFRYTNLNTNATSVAQGFKVSYTFNF"
misc_feature 330893..331018
/locus_tag="Dgeo_0331"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 333675..334616
/locus_tag="Dgeo_0332"
/db_xref="GeneID:4057881"
CDS 333675..334616
/locus_tag="Dgeo_0332"
/note="catalyzes the hydrolysis of pyrophosphate to
phosphate"
/codon_start=1
/transl_table=11
/product="manganese-dependent inorganic pyrophosphatase"
/protein_id="YP_603804.1"
/db_xref="GI:94984440"
/db_xref="InterPro:IPR001667"
/db_xref="InterPro:IPR004097"
/db_xref="GeneID:4057881"
/translation="MLAVFGHTNPDTDAIASALVYARLLTRQGVPAQAYRLGELNFET
PFVLREAGVEAPPLLPALEAGTPVALVDHNESAQSAPNLAELTVTRVVDHHKLGDLTT
AQPAYLRFEPVGCTATILLKLHREGNLPVEPVDARLMLSAILSDTLHFRSPTTTTDDR
EAVTFLAPIAGVEDVEAYALAMFAAKSDLGDTPAETLLKMDYKVFPFGDAGHQRWGIG
VIETTNPAYVLGRQEELLAAMDQARAEDGLNGILLSVVDILNETNVTLVLSATEEKVL
REAFGAEVQNGRADLGHRISRKKQIVPTLETYFAPEA"
misc_feature 333675..334607
/locus_tag="Dgeo_0332"
/note="putative manganese-dependent inorganic
pyrophosphatase; Provisional; Region: PRK05427"
/db_xref="CDD:180074"
misc_feature 333678..334106
/locus_tag="Dgeo_0332"
/note="DHH family; Region: DHH; pfam01368"
/db_xref="CDD:201752"
misc_feature 334209..334601
/locus_tag="Dgeo_0332"
/note="DHHA2 domain; Region: DHHA2; pfam02833"
/db_xref="CDD:202421"
gene 334696..335940
/locus_tag="Dgeo_0333"
/db_xref="GeneID:4057882"
CDS 334696..335940
/locus_tag="Dgeo_0333"
/note="TIGRFAM: FolC bifunctional protein: (1.6e-122);
PFAM: cytoplasmic peptidoglycan synthetases-like:
(3.7e-11) Mur ligase, middle region: (1.7e-08);
KEGG: dra:DR2575 folyl-polyglutamate synthetase,
ev=1e-126, 69% identity"
/codon_start=1
/transl_table=11
/product="bifunctional folylpolyglutamate synthase/
dihydrofolate synthase"
/protein_id="YP_603805.1"
/db_xref="GI:94984441"
/db_xref="InterPro:IPR001645"
/db_xref="InterPro:IPR004101"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:4057882"
/translation="MTDLDWLFARQRFGVHPGLTRVQALLARLGDPQQAFRTVLVGGT
NGKGSTAATLAAILKAGGERAGLFTSPHLTRFSERFVVGGEELSGEEVSDALRRVRPH
AEAGGASFFEIVTALGCLLFAEAGVTTAVMEVGLGGRLDATNALDPQLSVITNVGLDH
TEVLGKTHQAIAREKAGILRVGRPAVTGVAADLLPVLEARGADLWALGREVQLEARSL
GWDGWDVRVELPQATLALRTPLLGAHGAQNAALAAAAAHRLGLAEQAIREGARKVHWP
GRLEVLPWRGGRVLLDGAHNPDGARALVEALRGLGVEQLPIIFGAAADKDIAEVAAAL
RPLASEVILTRAVLSPRAADPTTLAPYFAGLPVQLASTPADALERLLPTGLALVCGSL
YLIGELRPLLLGEAGEGRERWQ"
misc_feature 334696..335913
/locus_tag="Dgeo_0333"
/note="Folylpolyglutamate synthase [Coenzyme metabolism];
Region: FolC; COG0285"
/db_xref="CDD:30633"
misc_feature 334822..>335235
/locus_tag="Dgeo_0333"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 335518..>335655
/locus_tag="Dgeo_0333"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 336011..337504
/locus_tag="Dgeo_0334"
/db_xref="GeneID:4057883"
CDS 336011..337504
/locus_tag="Dgeo_0334"
/note="PFAM: peptidase M32, carboxypeptidase Taq
metallopeptidase: (8.4e-164);
KEGG: sru:SRU_2485 carboxypeptidase, ev=1e-126, 47%
identity"
/codon_start=1
/transl_table=11
/product="thermostable carboxypeptidase 1"
/protein_id="YP_603806.1"
/db_xref="GI:94984442"
/db_xref="InterPro:IPR001333"
/db_xref="GeneID:4057883"
/translation="MSMDELKRRLGQVSDLHAAAGLMSWDQETLMPKEAARVRGLQLA
TLEGLAHELFTDARTAELLEAAGEPQDATDAAILRVTRRDYAKATRLPTEFVEEAARA
RNEAHHAWLHARQHSDFATFAPHLAKMMDLARRQADLLGYDEHPYDALLDEYEPGMRA
SQVEPVFADLRDRTLPLLRQIVAAGDAADYSVLTRPFPPAAQKAFAWRVAEEAFGLKP
EFARQDESAHPFQTNFSRSDLRITTRVEDYWPACLFGTWHETGHAMYERGISERWERT
PVSRGASLGVHESQSRMFENLLARSRPFWERYFPHLAEVAPEVTAGLDAETLYRAVNR
VQPSLIRVEADEVTYNFHIMLRFELELALLEGRLRVQELPEAWNAKMQEYLGLTPPND
ALGVLQDIHWSAGLIGYFPTYTLGNLLSVQLLEAAKRDRAVAEGIERAEYGPLLAWLV
EKVHQYGRSLTPAQITEQATGQVLTADPYVAYLHEKYAGIYGLQALS"
misc_feature 336011..337477
/locus_tag="Dgeo_0334"
/note="Zn-dependent carboxypeptidase [Amino acid transport
and metabolism]; Region: COG2317"
/db_xref="CDD:32471"
misc_feature 336035..337474
/locus_tag="Dgeo_0334"
/note="Peptidase family M32 includes thermostable
carboxypeptidases TaqCP and PfuCP; Region: M32_Taq;
cd06460"
/db_xref="CDD:188998"
misc_feature order(336782..336787,336794..336796,336872..336874,
337211..337213,337238..337240,337247..337249)
/locus_tag="Dgeo_0334"
/note="active site"
/db_xref="CDD:188998"
misc_feature order(336782..336784,336794..336796,336872..336874)
/locus_tag="Dgeo_0334"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:188998"
gene complement(337594..337845)
/locus_tag="Dgeo_0335"
/db_xref="GeneID:4057884"
CDS complement(337594..337845)
/locus_tag="Dgeo_0335"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603807.1"
/db_xref="GI:94984443"
/db_xref="GeneID:4057884"
/translation="MRALDIIAESIRVGYVHPTTVLNTLIEAENEGGLGAIRRIERHL
SLGLNALRDRQHPHSRLAQTWLGAARAYLVTQAERKQAV"
gene 338091..338513
/locus_tag="Dgeo_0336"
/db_xref="GeneID:4057885"
CDS 338091..338513
/locus_tag="Dgeo_0336"
/note="PFAM: helix-turn-helix motif: (2.3e-15);
KEGG: dra:DR2574 transcriptional regulator, HTH_3 family,
ev=8e-64, 92% identity"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_603808.1"
/db_xref="GI:94984444"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:4057885"
/translation="MRGNAAAEEVKMKLHERLRELRSERGLRLKDVAETAGISVPYLS
DLERGRTNPSLETLQTLAGAYSITVHDLLEGVEFYGDSTEGALPKGLADLVADPLLGS
QITPDWVRTLSRIELRGKRPRDKQDWYEIYLHLKRILG"
misc_feature <338178..338306
/locus_tag="Dgeo_0336"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(338178..338180,338211..338213,338220..338222,
338232..338237)
/locus_tag="Dgeo_0336"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
misc_feature 338229..338231
/locus_tag="Dgeo_0336"
/note="salt bridge; other site"
/db_xref="CDD:28977"
gene complement(338569..340074)
/locus_tag="Dgeo_0337"
/db_xref="GeneID:4057886"
CDS complement(338569..340074)
/locus_tag="Dgeo_0337"
/note="KEGG: dra:DR2572 hypothetical protein, ev=1e-86,
43% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603809.1"
/db_xref="GI:94984445"
/db_xref="GeneID:4057886"
/translation="MGVKGCDPELDLLHREADGDLTEAEWAQLTALSQDPSFAQTRQR
LRQATAALRALPPPTLPRSLAHEVASEIAWAAWLTTAPPPPRPAPIAAQVAADVRTSS
PLDAPPGLPHSLAPAVASDVAWAVRLRQSSPSLPISVAQAISARIAHEASAERTPPDT
VLPRHNPAPLLLVVGLLIGLTLLGLTSAWPNLAAGAAVAQALIAQVSPLAGVGLVLLL
AVSLLVAWRPTPAVQRFGAAAFALSAVLTLPPLYQAFGRSGVTVGHDVTVHGQVAGNV
IALGGNVILASDARVQGEVITLFGDVRRDPQARVTGRVNALLGHAPGDVTARQTAPPS
GLSLATASAFRPLLGWLGGAAWSRIFVVLTGGMLLLLFVTGAAPLLARRQRHAPLRTL
ALGVLALALLIGPALGLALAGLLVPALLACAFALLLVATGLSVSVYDAGRAAAYRLRL
PAPDVVGAVLGLIAVALSLSLPPLALIGALVGGAWGIGTLLLTRSEGQGRV"
gene complement(340114..340608)
/gene="moaC"
/locus_tag="Dgeo_0338"
/db_xref="GeneID:4057887"
CDS complement(340114..340608)
/gene="moaC"
/locus_tag="Dgeo_0338"
/note="MoaC; along with MoaA is involved in conversion of
a guanosine derivative into molybdopterin precursor Z;
involved in molybdenum cofactor biosynthesis"
/codon_start=1
/transl_table=11
/product="molybdenum cofactor biosynthesis protein MoaC"
/protein_id="YP_603810.1"
/db_xref="GI:94984446"
/db_xref="InterPro:IPR002820"
/db_xref="GeneID:4057887"
/translation="MSPEQDTSPELTHFRDGLPRMVDVTEKAATLRTATAEGWVRLPP
EARAALEGGTSPKGDPLTVARLGGLAGSKRTADLVLLCHPIPVTGADVRVTLEKAGVR
IVATVRTTAPTGVEMEALTAVSVAALNVYDMLKAASKAIEITGVRLLSKTGGKSGDYT
APDT"
misc_feature complement(340135..340548)
/gene="moaC"
/locus_tag="Dgeo_0338"
/note="MoaC family, prokaryotic and eukaryotic. Members of
this family are involved in molybdenum cofactor (Moco)
biosynthesis, an essential cofactor of a diverse group of
redox enzymes. MoaC, a small hexameric protein, converts,
together with MoaA, a guanosine...; Region: MoaC_PE;
cd01420"
/db_xref="CDD:29626"
misc_feature complement(order(340147..340182,340330..340350,
340357..340434,340537..340548))
/gene="moaC"
/locus_tag="Dgeo_0338"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:29626"
misc_feature complement(order(340189..340197,340372..340386,
340432..340440))
/gene="moaC"
/locus_tag="Dgeo_0338"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29626"
misc_feature complement(order(340204..340206,340213..340215,
340246..340248,340255..340263,340270..340272,
340360..340365,340369..340371,340390..340392,
340438..340440))
/gene="moaC"
/locus_tag="Dgeo_0338"
/note="putative active site [active]"
/db_xref="CDD:29626"
gene complement(340611..341261)
/locus_tag="Dgeo_0339"
/db_xref="GeneID:4057888"
CDS complement(340611..341261)
/locus_tag="Dgeo_0339"
/note="PFAM: protein of unknown function DUF177:
(1.5e-32);
KEGG: dra:DR2570 hypothetical protein, ev=5e-85, 69%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603811.1"
/db_xref="GI:94984447"
/db_xref="InterPro:IPR003772"
/db_xref="GeneID:4057888"
/translation="MPPPPLPRNAGAYHGGMTDSPHIHLGSLLRSATDAHVEGELDHL
IYEQGGREQTLRFARRAPYRVDVNPLGGGEMYLQGRFAPTLILECARCLRDVEVPLDL
KLGTLMRHDPAVNAPYLEEAETGEEVLVFGHPDLDLSAYLAETALLAAPLTVLHAPDC
KGLCQVCGHDLNEGPCEHLAQVPIEEIDDALGTPEGLAHARQNPFAALRDLNLPED"
misc_feature complement(340629..>341042)
/locus_tag="Dgeo_0339"
/note="Uncharacterized ACR, COG1399; Region: DUF177;
cl00616"
/db_xref="CDD:207136"
gene complement(341415..342482)
/locus_tag="Dgeo_0340"
/db_xref="GeneID:4057889"
CDS complement(341415..342482)
/locus_tag="Dgeo_0340"
/note="TIGRFAM: glucose-1-phosphate thymidyltransferase:
(3.9e-210);
PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase:
(0.0011) Nucleotidyl transferase: (4.1e-65);
KEGG: dra:DRA0031 glucose-1-phosphate
thymidylyltransferase, , ev=1e-155, 75% identity"
/codon_start=1
/transl_table=11
/product="glucose-1-phosphate thymidylyltransferase"
/protein_id="YP_603812.1"
/db_xref="GI:94984448"
/db_xref="InterPro:IPR001228"
/db_xref="InterPro:IPR005835"
/db_xref="InterPro:IPR005908"
/db_xref="GeneID:4057889"
/translation="MPAMKAIIPAAGLGTRLRPLTYTRPKPVLPVAGAPIIVHALRTL
LAAGINEVGIIVSDATRAEIAQTLEQVPEVQVTLINQHEQLGLGHAVLTARNWVGQQN
FCVYLGDNLFEHGVAPFIERFQREQAAAVIALVEVPDPTAFGVAELEGERITRLVEKP
KVPPSNLAVAGLYCFTPEVFDVLDGMPPSARGEYEITDAIQGLVDRGQTVLGQCVQGW
WKDTGRPADLLDANRLLLEQIGADVQGEVEGSRLTGRVIIPASARVTRSKIVGPVLLG
EGVVVEDAYIGPFTSIGPGSVVRQAEVEHSVVDAEARIEHLSTRLQDCLIGVRAQVRG
GHKIPRTHKLTLSDASVVELA"
misc_feature complement(341769..342473)
/locus_tag="Dgeo_0340"
/note="G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase; Region:
G1P_TT_long; cd04189"
/db_xref="CDD:133032"
misc_feature complement(341421..342470)
/locus_tag="Dgeo_0340"
/note="glucose-1-phosphate thymidylylransferase, long
form; Region: rmlA_long; TIGR01208"
/db_xref="CDD:162250"
misc_feature complement(order(341892..341894,342006..342011,
342051..342053,342156..342158,342222..342227,
342234..342236,342447..342452,342456..342458))
/locus_tag="Dgeo_0340"
/note="substrate binding site; other site"
/db_xref="CDD:133032"
misc_feature complement(order(341814..341816,341820..341822,
342156..342158))
/locus_tag="Dgeo_0340"
/note="metal-binding site"
/db_xref="CDD:133032"
misc_feature complement(order(342054..342056,342069..342080,
342144..342146))
/locus_tag="Dgeo_0340"
/note="Oligomer interface; other site"
/db_xref="CDD:133032"
gene 342806..343885
/locus_tag="Dgeo_0341"
/db_xref="GeneID:4057890"
CDS 342806..343885
/locus_tag="Dgeo_0341"
/note="PFAM: Nucleotidyl transferase: (3.2e-70);
KEGG: dra:DRA0032 mannose-1-phosphate guanylyltransferase,
ev=1e-157, 76% identity"
/codon_start=1
/transl_table=11
/product="mannose-1-phosphate guanylyltransferase"
/protein_id="YP_603813.1"
/db_xref="GI:94984449"
/db_xref="InterPro:IPR001538"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:4057890"
/translation="MTAPAFLPVILAGGSGERFWPLSRKHRPKQFLTLDETGRSLLQA
TSDRLGRLSGSPEQVMVVTGTEYRTQVLEQLPDMPIEHLIVEPVARDTAPAVLYAALR
VAQENPQAVMGVFPADHRITDAQAFGRVVRRAIEVAEITGGLVTLGVTPTFPATGYGY
IQRGEQLLGGELPAFRVSRFTEKPDAETAQLFLADGRYTWNSGMFIWRVQAILAAFEQ
YQPDMYAQLSAAVRGSPRQVRAVFPELQKISIDYAILEKSDQVVVIPAEFGWDDLGDW
NALERLLKGEGQNVAVGRHVGLDTDGAILYTTGGDGLIATIGLEDVVVVRTDEVTLVV
RKDRTQDIKKVVQQLKSHPELERFA"
misc_feature 342821..343759
/locus_tag="Dgeo_0341"
/note="Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane]; Region: {ManC};
COG0836"
/db_xref="CDD:31178"
misc_feature 342827..343642
/locus_tag="Dgeo_0341"
/note="GDP-M1P_Guanylyltransferase catalyzes the formation
of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase;
cd02509"
/db_xref="CDD:133003"
misc_feature order(342836..342838,342842..342844,343157..343159)
/locus_tag="Dgeo_0341"
/note="Substrate binding site; other site"
/db_xref="CDD:133003"
gene 343882..345546
/locus_tag="Dgeo_0342"
/db_xref="GeneID:4057891"
CDS 343882..345546
/locus_tag="Dgeo_0342"
/note="PFAM: lipopolysaccharide biosynthesis: (0.00015);
KEGG: dra:DRA0033 ExoP-related protein, ev=0.0, 67%
identity"
/codon_start=1
/transl_table=11
/product="protein-tyrosine kinase"
/protein_id="YP_603814.1"
/db_xref="GI:94984450"
/db_xref="InterPro:IPR003856"
/db_xref="GeneID:4057891"
/translation="MTLSRQSDQFPPERPGQGTENEIDLVTLWQGVRRRLPWIVLVAA
LLAGVVYLWSRVQPNVYEASSSLITTGNGNVGSLRDALVTAPPLPEGALQEALQGPIV
LGEVIRRVRQDDRLAPEMRAELANKLQQELQTRRVKTLDLQARLDPGGNGIYTVTAQG
PTPQAAALLADITAQALLNWDRGRALQGVQRAENSLRAQLAEIDRQLQSDTLNALERQ
TLVAARATAQRNLAQASIQAEGASGSLELVAPAVVPLKPVAPKPLRNAVLTALLVLLL
GSGVAALRTALDRTVRSEDDLLNFGLPTLGVIPRLRKRDVVFHGIVRAARQAGLYEAV
GFLRVNLLTRLGVHSGKCVMISSTAPGEGKSSLTATLADGLATSGQRVLIIDADLRRG
TQQEVWDKYEREHTWHQLAGTGGARTFQEALRQPDNVQVMEAEPEVHVLPAGPGIHDS
LALLNRPDLGDLLRRWGQAYDVVLIDSPPLLALADGLVIGKYVDGVLLVTEEGKTSLQ
AVRQALRRAGGAGVPILGFILNKVNVSAQEARTYGYGYLPRTKEIR"
misc_feature 344932..345513
/locus_tag="Dgeo_0342"
/note="capsular exopolysaccharide family; Region: eps_fam;
TIGR01007"
/db_xref="CDD:130080"
misc_feature 344938..>345471
/locus_tag="Dgeo_0342"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene 345550..346992
/locus_tag="Dgeo_0343"
/db_xref="GeneID:4057892"
CDS 345550..346992
/locus_tag="Dgeo_0343"
/note="PFAM: sugar transferase: (1.2e-86);
KEGG: dra:DRA0034 UDP-galactose-lipid carrier transferase,
ev=1e-175, 64% identity"
/codon_start=1
/transl_table=11
/product="undecaprenyl-phosphate
galactosephosphotransferase"
/protein_id="YP_603815.1"
/db_xref="GI:94984451"
/db_xref="InterPro:IPR003362"
/db_xref="GeneID:4057892"
/translation="MGIQVPAEVGSVGSMGRTGSVSLSALPQSLALLLGDVLSALLAC
LLASSLMTMLGRPALHLGPNLIWLGLWLLWRAYQGLYPGYGRSPQTELRLHTVGTLQV
AVAQLAAAVAVHRFAPSVAGVVTQWTLILILALLVRYAVRALLIHLGHYGRPISVMGA
GSTAALTIAHLRTHPAYGLNPVAAYDDNPALHGTALHSVPVLGPIALALENPLTEHAL
ISIPGARAQTQQRLVNSIYAVFPITWVIPDLFGVPNQALQPHNIGSVASLEVKNNLRS
MRARFIKRSIDLLGATVGGLLISPVLLLIALAIRLDSPGPIVYRARRLGRDGRPFDCF
KFRSMHRDADEKLQQVLENDPALKAEFEATHKLKNDPRVTRVGAFLRKTSLDELPQLA
NVLLGSMSLVGPRPIVQAEVEKYGDIYAIYKQVRPGMTGYWQANGRSDTSYDERVAMD
QFYITNWSPWLDMVVMIQTVRVVLMGKGAY"
misc_feature 345742..346989
/locus_tag="Dgeo_0343"
/note="Undecaprenyl-phosphate galactose
phosphotransferase, WbaP; Region: WbaP_sugtrans;
TIGR03022"
/db_xref="CDD:200231"
misc_feature 346396..346989
/locus_tag="Dgeo_0343"
/note="Bacterial sugar transferase; Region: Bac_transf;
pfam02397"
/db_xref="CDD:202231"
gene 346997..348289
/locus_tag="Dgeo_0344"
/db_xref="GeneID:4057893"
CDS 346997..348289
/locus_tag="Dgeo_0344"
/note="PFAM: polysaccharide biosynthesis protein:
(9.1e-22);
KEGG: ava:Ava_1044 polysaccharide biosynthesis protein,
ev=5e-17, 24% identity"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein"
/protein_id="YP_603816.1"
/db_xref="GI:94984452"
/db_xref="InterPro:IPR002797"
/db_xref="GeneID:4057893"
/translation="MHSSHLNLTTIKSTAWLMGGYLVRQGTQLISFILLTRTIGADGF
GAFTAVLALALIFSPFVEMGGYSLVIRDIERGDPVPDAAGHALAMSLSVIPVALAFTL
LLKPYLLPTVPIVFVVCVVVAELLANRALSIAAGVHVATKLTRRNAVVESAMGSSRLL
LTFLLSRYGGDLLTWGWLYLGQAVLGAVAVLGWVRQTWRGMTLRLPHAYKERLLEGVH
FAFGTSAQAASTELDKVMLGRLASLQDTGIFSAAQRLTSLSNVFLFSLLSSLYPRFFE
LGRQGHGQVRAYALRLLPVTLLYGLVVFGFFWLLAPYVGHVLGREFAQAGPALRWLAG
LALLNAIHYPLADALTGAGLQHVRTRLYLITLLLNVALNFWLIPRLGWLGAACATLIS
QSVLIMFLLLYRTSTARTPVNLTPILQGVDPDAVAQKD"
misc_feature 347027..348235
/locus_tag="Dgeo_0344"
/note="Membrane protein involved in the export of
O-antigen and teichoic acid [General function prediction
only]; Region: RfbX; COG2244"
/db_xref="CDD:32425"
misc_feature 347027..347827
/locus_tag="Dgeo_0344"
/note="MatE; Region: MatE; cl10513"
/db_xref="CDD:209159"
gene 348293..349132
/locus_tag="Dgeo_0345"
/db_xref="GeneID:4057894"
CDS 348293..349132
/locus_tag="Dgeo_0345"
/note="PFAM: glycosyl transferase, family 2: (1.4e-23);
KEGG: gka:GK3313 glycosyltransferase, ev=2e-33, 30%
identity"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_603817.1"
/db_xref="GI:94984453"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:4057894"
/translation="MFSLVVATLNRVEQLERLFESLLNQAEEFEVILVDQNERDILSG
VVEKFGQHFRIEHVQAPSRGVSVARNIGADRARAEIIAFPDDDCWYNSDTLATARRIL
DREEVDGAFGIILDQAGRQAVAKFPVSQQGITRETTWSTTIEAAGFFKSKSFKRLRGF
DERLGPGPSQRYGAHEIDDLVLRGIDQGMRFVFDPDLVVHHEQVLEVSFSQRIRRAHS
YGLGMGYVMHKHHVPLWRFAAVVFKPLAAQWVFHFRGDREKSEFYEILWRSRLLGWQE
YAD"
misc_feature 348293..349114
/locus_tag="Dgeo_0345"
/note="Predicted glycosyltransferases [General function
prediction only]; Region: COG1216"
/db_xref="CDD:31409"
misc_feature 348299..349018
/locus_tag="Dgeo_0345"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
misc_feature order(348311..348313,348317..348319,348389..348391,
348563..348565,348569..348571)
/locus_tag="Dgeo_0345"
/note="active site"
/db_xref="CDD:132997"
gene 349122..350375
/locus_tag="Dgeo_0346"
/db_xref="GeneID:4057895"
CDS 349122..350375
/locus_tag="Dgeo_0346"
/note="KEGG: bur:Bcep18194_B1815 hypothetical protein,
ev=2e-16, 29% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603818.1"
/db_xref="GI:94984454"
/db_xref="GeneID:4057895"
/translation="MRISTDTLLRPSVFLSCMGCVIWLAFQLIPVQTYIELFYSRKVN
GPGLAGLLFALLGITTLFAAVGEQVGRIRNARTVMSFKRTAVSLPRWWVIGALLFSIS
AYILWFGLGMVRAGGLMGLYAAYRENAFFVKEVLLKPVSGLTSFTQLAVIAVPLAILN
VNSRRTERYLVAFILLLAIIRSFLYSERLSLLEILIPLLVIWAIRRRLSVGRTFLLAI
LFFVMVIGFFILNEAERSFAVRGVSDLPTLISLGTYRFFGYYLTSVNNFGLAVDVYPF
RFPFYFTLLGLWSLPGLDNLYTIVSGIQVFDAPKILAFNRLNPELNVFTTPGYWIMEY
GIPGSLFASAIYGFLSGLFYANARKSSYWLAFYAVWFVGIMEFMRIYYFGSPRVFIPM
VFFALTIVLAKLQIFRERLRYEFSG"
gene 350359..351381
/locus_tag="Dgeo_0347"
/db_xref="GeneID:4057896"
CDS 350359..351381
/locus_tag="Dgeo_0347"
/note="PFAM: glycosyl transferase, group 1: (8.9e-31);
KEGG: dra:DRA0039 mannosyltransferase, ev=8e-76, 46%
identity"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_603819.1"
/db_xref="GI:94984455"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:4057896"
/translation="MSSVVNVRNLSGPLTGVQRYTQELVSRLPELAQLGQGVKGGILG
HVWEQAVLPTLCRGQLLWSPGNTGPLAVRRQVVTIHDAATLDHPEWFDRKFASWYNVL
IPQVAKTAQRIITVSEFSRRRLVDRCGVAAEKIVVTPLGVAEHFRKPVEDSAAVLERL
GLQGKRYFLFVSSLEPRKNARRILDAWATWDDRPSDVVLAVVGETGGVFQQEVLPQNL
RNVKFLGRLSDEELRAAYAGAHAFVYVSLYEGFGLPPLEAMASGAPVIASNVASLPEV
VGDAALLVNPLRTEEILGAMRRLIRDGTLHAELVERGRAQSRRFTWQRTAELTWQILR
EAEHVA"
misc_feature 350368..351351
/locus_tag="Dgeo_0347"
/note="This family is most closely related to the GT1
family of glycosyltransferases. mtfB (mannosyltransferase
B) in E. coli has been shown to direct the growth of the
O9-specific polysaccharide chain. It transfers two
mannoses into the position 3 of the...; Region:
GT1_mtfB_like; cd03809"
/db_xref="CDD:99981"
misc_feature <350584..351366
/locus_tag="Dgeo_0347"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
gene 351371..351886
/locus_tag="Dgeo_0348"
/db_xref="GeneID:4057897"
CDS 351371..351886
/locus_tag="Dgeo_0348"
/note="KEGG: syf:Synpcc7942_2420 serine
O-acetyltransferase, ev=7e-29, 45% identity"
/codon_start=1
/transl_table=11
/product="Serine O-acetyltransferase"
/protein_id="YP_603820.1"
/db_xref="GI:94984456"
/db_xref="InterPro:IPR001451"
/db_xref="GeneID:4057897"
/translation="MWPELVRLWRQDAAAVEASLPMVVLSNRGFHALVAYRLAHALHH
RQVPLVPLVLSRIIQVLYGIDIDYRARLGGGIVIVHGVGTVIGQGVVMEGETKIYHGV
TLGIAERSKGDGFPHVARDVILGAGAKVLGPVHVGEGARVGANAVVLRDVPAYHVASG
VPAVSRARKKG"
misc_feature 351398..351859
/locus_tag="Dgeo_0348"
/note="serine O-acetyltransferase; Region: cysE;
TIGR01172"
/db_xref="CDD:200082"
misc_feature 351554..351856
/locus_tag="Dgeo_0348"
/note="Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl group
of L-serine to form O-acetylserine, as the first step of a
two-step biosynthetic pathway in bacteria and plants
leading to the formation of...; Region: LbH_SAT; cd03354"
/db_xref="CDD:100045"
misc_feature order(351557..351559,351563..351565,351608..351610,
351710..351712,351800..351802,351809..351811,
351815..351817)
/locus_tag="Dgeo_0348"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100045"
misc_feature order(351605..351610,351665..351670,351686..351691,
351710..351715,351746..351748,351791..351793,
351797..351802,351809..351811,351815..351817,
351839..351841,351854..351856)
/locus_tag="Dgeo_0348"
/note="active site"
/db_xref="CDD:100045"
misc_feature order(351605..351610,351686..351688,351710..351715)
/locus_tag="Dgeo_0348"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100045"
misc_feature order(351665..351670,351686..351691,351746..351748,
351791..351793,351797..351802,351809..351811,
351815..351817,351839..351841,351854..351856)
/locus_tag="Dgeo_0348"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100045"
gene 351883..353079
/locus_tag="Dgeo_0349"
/db_xref="GeneID:4057898"
CDS 351883..353079
/locus_tag="Dgeo_0349"
/note="PFAM: glycosyl transferase, group 1: (4.6e-28);
KEGG: pst:PSPTO3448 glycosyl transferase, group 1 family
protein, ev=1e-105, 53% identity"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_603821.1"
/db_xref="GI:94984457"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:4057898"
/translation="MSSPTIWSFPRRSLDAHNVAFVQDWLAGGFVGSEKVLAEMLAVL
PQRPIYTLVHKPEDFVGTPLQDAQVHTSVLQSLPGAVKHYRHFLPLMPYAVEQFDLSG
YDVVVSSSHAVAKGVLVGAEQLHLSYVHSPIRYVWDLYQQYLREANLTVGVRSVLARI
ILHYIRIWDGGTANRVDVFLANSAYVARRIWRTYRRPARVLYPPVDTHRFDATQSRED
FYLTMSRFVPYKKIDLIVETFTRLGKPLVVIGSGPDFAKVQALAGPTVQLLGRQPDEV
VADYMARCRAFVFAADEDFGIVPVEAQAAGAPVIAYGKGGSLETVIPDHTGILFGQQN
VPSLTRAVELFETRESEFSAQVIRQNAERFSAERFRQEFRLIYEAAVLARNEGRDPEQ
AVMQLP"
misc_feature 351934..353034
/locus_tag="Dgeo_0349"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature 351937..353004
/locus_tag="Dgeo_0349"
/note="This family is most closely related to the GT1
family of glycosyltransferases. wbaZ in Salmonella
enterica has been shown to possess the mannosyl
transferase activity. The members of this family are found
in certain bacteria and Archaea; Region: GT1_wbaZ_like;
cd03804"
/db_xref="CDD:99976"
misc_feature order(351976..351978,352549..352557,352708..352710,
352774..352776)
/locus_tag="Dgeo_0349"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99976"
gene 353076..354035
/locus_tag="Dgeo_0350"
/db_xref="GeneID:4057899"
CDS 353076..354035
/locus_tag="Dgeo_0350"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603822.1"
/db_xref="GI:94984458"
/db_xref="GeneID:4057899"
/translation="MTSPPVPAEREMPGDVRSVKLGVGRAPEGWQERGVGSPQSDGVN
LYRPVRGTYVLSFPVTQPTFAVVQLQVYASPAPLSSWARIDGQPVPLVLVENLPRLEM
LLAPGLHTLQVTLRCSKNACHSAPRLYGTEVTLRSVRAAIEPGGIAVSRVNADSPGSP
LKVRGASPVRSDGVNLYREVSGPEPILLQWPSRLLALKAEYQVFSASGALTVRAEVND
RVVASSQIPARTFTYQTVNLLNAGPAGQTGPLRITFSCQGKTSACFPARLYFTHVETL
RGTVREHPLSPLQWAGLILLCLMMLAVLGLWLRLPVPGRFARR"
gene complement(353968..355167)
/locus_tag="Dgeo_0351"
/db_xref="GeneID:4057900"
CDS complement(353968..355167)
/locus_tag="Dgeo_0351"
/note="PFAM: O-antigen polymerase: (7.6e-13);
KEGG: dra:DRA0046 hypothetical protein, ev=1e-146, 67%
identity"
/codon_start=1
/transl_table=11
/product="O-antigen polymerase"
/protein_id="YP_603823.1"
/db_xref="GI:94984459"
/db_xref="InterPro:IPR007016"
/db_xref="GeneID:4057900"
/translation="MSSSPAHAPAFTPPKWVSGLIALVPIFPPLYLAALGCLGHLRTL
PLTARYVLFFFAGTQLVAALFTPRPLLSLGLAAGRTLLILSMIAAGVYLQDSRNLRPL
LWGQLVIFATAWGYTLFTQGFAGVQERLGHPYYYIVSLGLVAVVALWLIVFWRGGRLW
WRVPAGLLALATFLAAGSRGPLLALGVGSLAALAFAGRRRRWWVLLPGVLALVLALVG
GHWLSNYFPPASRLLNNQLNGRAEVWTDAWHAWQTSWLGGVGPYQGGAYLFSLMQQGC
SLTPTLSREGSTCPPWLETFSSIWLIAHNAWLHWLMEAGLVGTLSLLALQVYSGWKIW
LKRDPLLIAIFFGYLVMNLVDVVMAVPSQHFAELWWVVVGMALITVGQSARAPASATT
VPAPQAS"
misc_feature complement(354199..>354465)
/locus_tag="Dgeo_0351"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:203125"
gene complement(355227..355301)
/locus_tag="Dgeo_R0011"
/note="tRNA-Glu2"
/db_xref="GeneID:4057697"
tRNA complement(355227..355301)
/locus_tag="Dgeo_R0011"
/product="tRNA-Glu"
/db_xref="GeneID:4057697"
gene 355442..356869
/locus_tag="Dgeo_0352"
/db_xref="GeneID:4057901"
CDS 355442..356869
/locus_tag="Dgeo_0352"
/note="PFAM: phosphoglucomutase/phosphomannomutase C
terminal: (1.7e-05) phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain I: (1.2e-44)
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain II: (2.2e-07) phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain III: (1.4e-07);
KEGG: dra:DRA0047 phosphomannomutase, ev=0.0, 78%
identity"
/codon_start=1
/transl_table=11
/product="phosphoglucomutase/phosphomannomutase
alpha/beta/subunit"
/protein_id="YP_603824.1"
/db_xref="GI:94984460"
/db_xref="InterPro:IPR005841"
/db_xref="InterPro:IPR005843"
/db_xref="InterPro:IPR005844"
/db_xref="InterPro:IPR005845"
/db_xref="InterPro:IPR005846"
/db_xref="GeneID:4057901"
/translation="MPIKFGTDGWRDIIAEDFTYENVRLVARAHAQAMRAAGGRRVVV
GFDTRFQGANFARVAAETLAEGGLDVLLAREFLPTPALSFAAVHHRAAGGVMITASHN
PPLYSGYKVKGAYGGSATPAIVTEIERALAFPEVYDGPRGSIEPLDIREAYFAQLDRQ
LDLETLRGYRGTVIHDAMGGAACGWLTGYARHAGLNLDLHELHGQPDPMFYGVNPEPV
PQNLEALMARLRDETGTTLGVVTDGDADRVGAVTAGGHFFNSHQIFAVLLRHLYGRGL
RGRVVKTVSGSRVIELLAQQLGLELLETPVGFKYITDAFLAGQQDETRAVLMGGEESG
GLSSRGHIPERDGLLNSLLLMEAVAASGKSLDELFAEIEAEVGFRHHYDRRDLHLSAA
FDKTALLQEAQAYTEIAGYPVEGLKTTDGVKLLLAGGASAMFRASGTEPVIRVYVEAQ
SPEALQAILNEATRRVLALESTPSV"
misc_feature 355442..356857
/locus_tag="Dgeo_0352"
/note="Phosphomannomutase [Carbohydrate transport and
metabolism]; Region: {ManB}; COG1109"
/db_xref="CDD:31306"
misc_feature 355448..356839
/locus_tag="Dgeo_0352"
/note="The alpha-D-phosphohexomutase superfamily includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this family include the
phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine...; Region: phosphohexomutase; cl03757"
/db_xref="CDD:208029"
misc_feature order(355457..355459,355463..355465,355472..355474,
355739..355747,355769..355771,356165..356167,
356171..356173,356177..356182,356294..356296,
356357..356365,356432..356434,356438..356440,
356444..356446,356744..356746,356750..356758,
356771..356773)
/locus_tag="Dgeo_0352"
/note="active site"
/db_xref="CDD:100086"
misc_feature order(355463..355465,355739..355741,356180..356182,
356294..356296,356357..356359,356363..356365,
356432..356434,356438..356440,356444..356446,
356744..356746,356750..356758,356771..356773)
/locus_tag="Dgeo_0352"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100086"
misc_feature order(355739..355741,356165..356167,356171..356173,
356177..356179)
/locus_tag="Dgeo_0352"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100086"
gene complement(356938..358344)
/locus_tag="Dgeo_0353"
/db_xref="GeneID:4057902"
CDS complement(356938..358344)
/locus_tag="Dgeo_0353"
/note="E3 component of 2-oxoglutarate dehydrogenase
complex; catalyzes the oxidation of dihydrolipoamide to
lipoamide"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide dehydrogenase"
/protein_id="YP_603825.1"
/db_xref="GI:94984461"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000205"
/db_xref="InterPro:IPR000815"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR002218"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR004099"
/db_xref="InterPro:IPR004792"
/db_xref="InterPro:IPR006258"
/db_xref="InterPro:IPR012999"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4057902"
/translation="MDAYDVLVIGGGPAGYVAAIRAAQLGFKTACVDAFTRNGKASLG
GTCLNVGCIPSKALLDSSERFEMIKHEAGEHGIQVDGATVDVAKMLGRKESVVDKLTG
GIAYLFKKNKVTSIHGLGRLVRREGDSWIVDAAGTEVRAKNVIVATGSTPRQLPGVPF
GGNIVDNEGALAFTQVPAQLGVIGAGVIGVELGSVWRRLGAQVTILEALPGFLMAADD
AVSKEALKQFQKQGLDFHFGVKITEVKQDDSGVTVTYEEQGQPVTARFDKLIVSIGRV
PNTQGLGAQEVGLQLDERGFVKVDHHFRTNLPGVYAIGDVIGGPMLAHKAEEEGVAVA
ELLAGQAGHVNYAVVPWVIYTSPEIAWAGLTEKQAKEQGHKVKTGQFPFSANGRALGH
GDPRGFVKVVADADTDRILGVHMVGPNVSELIGETVALMEFGASAEDLARTVHAHPTL
SEVVKEAALATDKRALHM"
misc_feature complement(356941..358344)
/locus_tag="Dgeo_0353"
/note="dihydrolipoamide dehydrogenase; Validated; Region:
PRK06327"
/db_xref="CDD:180529"
misc_feature complement(<358216..358335)
/locus_tag="Dgeo_0353"
/note="glycerol-3-phosphate dehydrogenase, anaerobic, B
subunit; Region: glycerol3P_GlpB; TIGR03378"
/db_xref="CDD:211815"
misc_feature complement(357574..357807)
/locus_tag="Dgeo_0353"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(356971..357300)
/locus_tag="Dgeo_0353"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene complement(358420..359073)
/locus_tag="Dgeo_0354"
/db_xref="GeneID:4057903"
CDS complement(358420..359073)
/locus_tag="Dgeo_0354"
/note="PFAM: response regulator receiver: (4.2e-23);
KEGG: ttj:TTHB173 response regulator, ev=3e-37, 48%
identity"
/codon_start=1
/transl_table=11
/product="fused response regulator receiver/hypothetical
protein"
/protein_id="YP_603826.1"
/db_xref="GI:94984462"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002086"
/db_xref="GeneID:4057903"
/translation="MTFIRTLIVEDDPRIARLHRGQLEGAGDFEVLGTAETLQVARVM
AETLCPDLLLLDVYLPDGRGLDLLRELRARGQRVDAVLLTAASDIPSVQEALALGAAD
YLVKPCTPERFALALDRVRERSALWQQEAVRQGHLDALFARPPLPASGLDPETLHRVR
ATLRSGRAYSARELGQTLGLSRVTAWRYLEHLVEAGEACAATDVRGIGRPVKRYRRA"
misc_feature complement(358429..359064)
/locus_tag="Dgeo_0354"
/note="Response regulator of citrate/malate metabolism
[Transcription / Signal transduction mechanisms]; Region:
CitB; COG4565"
/db_xref="CDD:34203"
misc_feature complement(358714..359055)
/locus_tag="Dgeo_0354"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(358753..358758,358765..358767,
358822..358824,358882..358884,358906..358908,
359041..359046))
/locus_tag="Dgeo_0354"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(358906..358908)
/locus_tag="Dgeo_0354"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(358882..358890,358894..358899))
/locus_tag="Dgeo_0354"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(<358585..358782)
/locus_tag="Dgeo_0354"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature complement(358750..358758)
/locus_tag="Dgeo_0354"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(359070..360704)
/locus_tag="Dgeo_0355"
/db_xref="GeneID:4057904"
CDS complement(359070..360704)
/locus_tag="Dgeo_0355"
/note="PFAM: ATP-binding region, ATPase-like: (3e-24);
KEGG: bha:BH3839 two-component sensor histidine kinase,
ev=4e-60, 31% identity"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase regulating
citrate/malate metabolism"
/protein_id="YP_603827.1"
/db_xref="GI:94984463"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4057904"
/translation="MFRSSSNSGLVSVSNLAREVALPHTPRLLRVQSRLFLSIAAAFL
LLALPLALLATVTLRGTIHRTYAERALRESRLIATLPPVRAALEGDRQARAGLNGLIN
GYRALLGADYVVVTDRSTRRLTHPNPARLGERMVGGDFQSFLVGRSVTETVEGTLGRS
VRAKVPVLAGDGRVLGLASVGFLLPRLGEVFQAVVRVALPWYAGALVLALLLASLLAR
RVRREMLDLEPEQIAGGLLHYRTVLNALEEGVLVVQGGQVHVMNPQARALLGVGKDTA
ETLPVPLSRLLPTTLLEDPSPESPIPVTVRDRPLLVSVRPAPDGAQVVTLRDLARMRA
LADELTQARRYADLLRAQTHEFTNRLHTLAGLLQLGETREALNLIYAQSNRHAAHAEA
VRALRHVRLVALVLGKYERAAELGLTLTLDPLSTLPDALPPGVLDLIELSVGNLLENA
FEALHGQPSGQVHLLIAYDPEGLVVEVRDNGPGVPAPLAATLTQRGVSSKGPGRGVGL
ALVQRRADDLGATLTHDRRADATGQHWTRFTLEVPL"
misc_feature complement(359076..360524)
/locus_tag="Dgeo_0355"
/note="Signal transduction histidine kinase regulating
citrate/malate metabolism [Signal transduction
mechanisms]; Region: CitA; COG3290"
/db_xref="CDD:33099"
misc_feature complement(359079..359378)
/locus_tag="Dgeo_0355"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(359091..359093,359097..359102,
359127..359129,359133..359135,359181..359192,
359253..359258,359262..359264,359268..359270,
359274..359276,359349..359351,359358..359360,
359370..359372))
/locus_tag="Dgeo_0355"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(359358..359360)
/locus_tag="Dgeo_0355"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(359184..359186,359190..359192,
359256..359258,359262..359264))
/locus_tag="Dgeo_0355"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 360988..362316
/locus_tag="Dgeo_0356"
/db_xref="GeneID:4057905"
CDS 360988..362316
/locus_tag="Dgeo_0356"
/note="PFAM: sodium:dicarboxylate symporter: (1e-173);
KEGG: dra:DR2525 C4-dicarboxylate transport protein,
ev=0.0, 77% identity"
/codon_start=1
/transl_table=11
/product="sodium:dicarboxylate symporter"
/protein_id="YP_603828.1"
/db_xref="GI:94984464"
/db_xref="InterPro:IPR001991"
/db_xref="GeneID:4057905"
/translation="MPKIFRSLYVQVLIAIVLGILVGFLFPSFGEGLKPLGDGFIKLI
KMLIAPIIFATVVSGIAHMRDTKKVGRVGGKALIYFEVVTTFALVIGLVVANILKPGH
GMNVNPATLDTSAISKYTQAAGEQSVADFLLHIIPNTLVSAFTEGDLLQVLLISVLFG
FALTQLGTLGQKVLAGIEAVNSAVFVILGFVMRLAPIGAFGAMAFTIGKYGVGTLAQL
AYLMVAFYATCLLFVFVVLGLIARFAGFSILKFIRFIKEELLLVLGTSSSESALPRLI
TKLEYAGANRSVVGLVVPAGYSFNLDGTSIYLTMATLFIAQATNTHLSLGQQLGILGV
LLLTSKGAAGVTGSGFITLAATLSAVGHVPVAGLALILGIDRFMSEARALTNFVGNGV
ATLVIARSEKALDTNRLQRVLNGEVLPPATPEVAAEERGEGRGLDGPLPA"
misc_feature 360988..362262
/locus_tag="Dgeo_0356"
/note="C4-dicarboxylate transporter DctA; Reviewed;
Region: PRK01663"
/db_xref="CDD:179317"
misc_feature 360988..362250
/locus_tag="Dgeo_0356"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
gene complement(362317..363258)
/locus_tag="Dgeo_0357"
/db_xref="GeneID:4057440"
CDS complement(362317..363258)
/locus_tag="Dgeo_0357"
/note="PFAM: Indigoidine synthase A like protein:
(1.2e-198);
KEGG: dra:DR2311 hypothetical protein, ev=1e-136, 81%
identity"
/codon_start=1
/transl_table=11
/product="indigoidine synthase A like protein"
/protein_id="YP_603829.1"
/db_xref="GI:94984465"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR007342"
/db_xref="GeneID:4057440"
/translation="MLTPIPSQVTQLMDLHPEVAAALTAGHPVVALESTIISHGMPYP
QNVEMATGVETIVRENGATPATIAVLGGRLKVGLTPDELEQLATDRRVQKISTRDLPF
TVALGGHGATTVAATMRIAALAGIRVFATGGTGGVHRGASESMDISADLTELARTDVC
VVSAGVKSILDIGLTLEVLETHGVPTLTLGSEEFPAFYSRRSGFASPLTVQTEAEAAR
VLHAKWTLGLTGGVLLANPIPEDAEIPAAEISPHIEQALADMAALGLTGKATTPYLLG
RLVEITGGRSLAANIALVRHNAAVAARVASAYAALQG"
misc_feature complement(362386..363210)
/locus_tag="Dgeo_0357"
/note="Indigoidine synthase A like protein; Region:
Indigoidine_A; pfam04227"
/db_xref="CDD:190914"
gene complement(363341..364474)
/locus_tag="Dgeo_0358"
/db_xref="GeneID:4057441"
CDS complement(363341..364474)
/locus_tag="Dgeo_0358"
/note="PFAM: PfkB: (2.9e-60) Helix-turn-helix, type 11:
(0.0012);
KEGG: dra:DR2312 carbohydrate kinase, PfkB family,
ev=1e-127, 67% identity"
/codon_start=1
/transl_table=11
/product="PfkB protein"
/protein_id="YP_603830.1"
/db_xref="GI:94984466"
/db_xref="InterPro:IPR002173"
/db_xref="InterPro:IPR011611"
/db_xref="InterPro:IPR013196"
/db_xref="GeneID:4057441"
/translation="MPLTERERALLNLIREAPLSTPAELARRLGTSRAAVNVHVSNLI
RKGALLGRGYVVAPEQEARVVVVGGANVDIKARTLAPAVSGTSNPGMTRQAAGGVARN
IAENLARLGIQTHLITALGRDAPGDLLLRETEAAGVDMRSVLRLDAPTGTYTAVLDNS
GELLIAVAAMEVTAALTPAALNERRGLLQHASWVVADGNLSAETLTHLLTLCREAGVP
VTFEPVSVPKAAHLLPALHSGLAPHTVTPNVAELAALTSRDVADTPAALGAAAQELHA
RGVQTVWVRRGDRGSLLSTPEGVTELPALPAQVADVTGAGDAMLAAYLAALLEGHSPA
EAARHGHAAAALTVESPHTVSPTLTPAALRARLGSPEAADRER"
misc_feature complement(<364274..364474)
/locus_tag="Dgeo_0358"
/note="Transcriptional regulators [Transcription]; Region:
Lrp; COG1522"
/db_xref="CDD:31711"
misc_feature complement(364334..364468)
/locus_tag="Dgeo_0358"
/note="Winged helix-turn-helix DNA-binding; Region:
HTH_24; pfam13412"
/db_xref="CDD:205590"
misc_feature complement(order(364352..364366,364370..364375,
364379..364384,364406..364408,364412..364417,
364457..364465))
/locus_tag="Dgeo_0358"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(363368..364288)
/locus_tag="Dgeo_0358"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature complement(363425..364288)
/locus_tag="Dgeo_0358"
/note="YeiC-like sugar kinase. Found in eukaryotes and
bacteria, YeiC-like kinase is part of the ribokinase/pfkB
sugar kinase superfamily. Its oligomerization state is
unknown at this time; Region: YeiC_kinase_like; cd01941"
/db_xref="CDD:29363"
misc_feature complement(order(363524..363526,363533..363535,
364169..364171))
/locus_tag="Dgeo_0358"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29363"
misc_feature complement(order(363443..363445,363452..363454,
363518..363520,363527..363532,363539..363541,
363620..363622,363731..363733))
/locus_tag="Dgeo_0358"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29363"
gene complement(364565..365398)
/locus_tag="Dgeo_0359"
/db_xref="GeneID:4057442"
CDS complement(364565..365398)
/locus_tag="Dgeo_0359"
/note="PFAM: HpcH/HpaI aldolase: (6.5e-47);
KEGG: dra:DR2206 citrate lyase beta chain, ev=1e-119, 79%
identity"
/codon_start=1
/transl_table=11
/product="citryl-CoA lyase"
/protein_id="YP_603831.1"
/db_xref="GI:94984467"
/db_xref="InterPro:IPR005000"
/db_xref="GeneID:4057442"
/translation="MSVKPWRSVLYVPGDKPRAIEKARTLRADAVILDLEDAVAPEHK
DAARGNVKAALAWRWPGPLLVRVNGLGTPWEHADREMALLAGVDGLVLPKVEDAATVH
ALHLRVPLWPMIETPLGVLRAPEIAAVPGVAGLIVGANDLARVLRTRPHPERLPLLHA
LSAVVLAARAHGKVPLDAVFNDVRDPQGFTRECEQGRTLGFAGKTVIHPDQVELANGV
FGVTDAEADGARALLAVWEQARAEGKSVATYRGTLVEQMHADEARETLELWEKARSGP
Y"
misc_feature complement(364589..365377)
/locus_tag="Dgeo_0359"
/note="Citrate lyase beta subunit [Carbohydrate transport
and metabolism]; Region: CitE; COG2301"
/db_xref="CDD:32456"
gene complement(365511..365900)
/locus_tag="Dgeo_0360"
/db_xref="GeneID:4057443"
CDS complement(365511..365900)
/locus_tag="Dgeo_0360"
/note="PFAM: Glyoxalase/bleomycin resistance
protein/dioxygenase: (3.7e-14);
KEGG: dra:DR2208 lactoylglutathione lyase, , ev=1e-55, 79%
identity"
/codon_start=1
/transl_table=11
/product="glyoxalase/bleomycin resistance
protein/dioxygenase"
/protein_id="YP_603832.1"
/db_xref="GI:94984468"
/db_xref="InterPro:IPR004360"
/db_xref="InterPro:IPR011588"
/db_xref="GeneID:4057443"
/translation="MRALETCLYVDDLDRAETFYSEVLGLTLYAKAAGRHLFYRLEGS
MLLLFNPAASALPGEVPSHAGKPGGHACLSIPREETDAWQARLERHGLEVTRYAWGSR
GESLYFKDPAGNVLELAPGSIWGLGPT"
misc_feature complement(365541..365894)
/locus_tag="Dgeo_0360"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_13; cd08354"
/db_xref="CDD:176702"
misc_feature complement(order(365550..365552,365691..365693,
365886..365888))
/locus_tag="Dgeo_0360"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:176702"
misc_feature complement(365547..365885)
/locus_tag="Dgeo_0360"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
gene complement(365945..366685)
/locus_tag="Dgeo_0361"
/db_xref="GeneID:4057444"
CDS complement(365945..366685)
/locus_tag="Dgeo_0361"
/note="PFAM: protein of unknown function RIO1: (6.1e-16);
KEGG: dra:DR2209 SudD-related protein, ev=1e-109, 70%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603833.1"
/db_xref="GI:94984469"
/db_xref="InterPro:IPR000687"
/db_xref="GeneID:4057444"
/translation="MIRFLLDRGHITEVVAELGSGKEATAYVARGPRGSVLLKLYRDL
EARSFKRDGVYREGQFIPDKRAAKAMQGRSRKGLAMLQAGWVCAESAHLWHLWRAGLN
IPEPLVGPEPNEYEQTAPAVLMRLIGTEDTPAPRLSDASLTPEEARSAWQQAVQGMAD
LLRLGDVHGDYNTYNLLWWENTLTIIDFPQLTTRTNPNFQQLLRRDAESLATSFRKHG
LHETGEQTLREVQRRATGPGPKPRVLLP"
misc_feature complement(365948..366682)
/locus_tag="Dgeo_0361"
/note="Serine/threonine protein kinase involved in cell
cycle control [Signal transduction mechanisms / Cell
division and chromosome partitioning]; Region: RIO1;
COG1718"
/db_xref="CDD:31904"
misc_feature complement(366035..366646)
/locus_tag="Dgeo_0361"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature complement(order(366125..366130,366155..366157,
366161..366163,366278..366280,366305..366316,
366374..366376,366569..366571,366608..366610,
366614..366619,366632..366634))
/locus_tag="Dgeo_0361"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88273"
gene 367216..368283
/locus_tag="Dgeo_0362"
/db_xref="GeneID:4057445"
CDS 367216..368283
/locus_tag="Dgeo_0362"
/note="PFAM: Mg2+ transporter protein, CorA-like:
(8.2e-15);
KEGG: mta:Moth_0267 magnesium and cobalt transport protein
CorA, ev=1e-25, 25% identity"
/codon_start=1
/transl_table=11
/product="Mg2+ transporter protein, CorA-like protein"
/protein_id="YP_603834.1"
/db_xref="GI:94984470"
/db_xref="InterPro:IPR002523"
/db_xref="GeneID:4057445"
/translation="MSGKAIRGAGRGAGKELDNRTRSSRQRHGAAEDQHLRAYLFDAE
GEDREVQLSEELLRGLCESQLLWVDVPGRKAGELERVAALLGLDQRAVQQLADPSPQP
VVESYGETFRVDVQALREHHGRLRGDELNIVVGPNYLLTVHPENVGFVEDFADQQRGN
GKLGRLTSQTFLAALLNWHLNSYLHEVEALEGKLDPLDEAILQRPTNREFLGDLVCYR
RRAGELRHLLASHRDVYATLSRPDFKALADEESARNFDALEDRFERALTAIEGLREAI
LGSFDVYMTSLGQRTNETMRLLTVVTVVMGLWALVAGIFGMNFDATFQHSSWHGFELV
VALLLLATLLILWLTRKRQWW"
misc_feature 367399..368199
/locus_tag="Dgeo_0362"
/note="CorA-like Mg2+ transporter protein; Region: CorA;
pfam01544"
/db_xref="CDD:201848"
gene complement(368353..369306)
/locus_tag="Dgeo_0363"
/db_xref="GeneID:4057446"
CDS complement(368353..369306)
/locus_tag="Dgeo_0363"
/note="KEGG: dra:DR0268 sulfonate/nitrate/taurine
transport system substrate-binding protein, ev=1e-129, 73%
identity"
/codon_start=1
/transl_table=11
/product="sulfonate/nitrate/taurine transport system
substrate-binding protein"
/protein_id="YP_603835.1"
/db_xref="GI:94984471"
/db_xref="GeneID:4057446"
/translation="MRRALALLMLLGAAASAQGTPRTVNIGLGYIPNVQFTPFYVADK
LGYYRSEGLNVKFQHGYVSELMPLLLQGKIDFIVGDPEDAIFARNQGAPVKYVMAMYQ
KSPVTVFSLKPLSRAADLKGKTVGIPGTFGSSYAAIRALLDSAGLQEGRDVRLAAIGF
TQLDAVRAGRVDAAVGFVNNEVVQLRDAGQKVSTLDVSDAYPMVGSGLITLDKTLGGD
LARKVVRASQRGLKFTVADPARAFRLAQPVFGSGGGTLDVLRASVPLIQSAYTRSHGL
GASDPAGWSKAIAALIKQGSLPAGTKAETFYTNSLISKTVR"
misc_feature complement(<368818..369246)
/locus_tag="Dgeo_0363"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
misc_feature complement(368584..369210)
/locus_tag="Dgeo_0363"
/note="NMT1/THI5 like; Region: NMT1; pfam09084"
/db_xref="CDD:192206"
gene 369448..370194
/locus_tag="Dgeo_0364"
/db_xref="GeneID:4057447"
CDS 369448..370194
/locus_tag="Dgeo_0364"
/note="KEGG: dra:DR0269 hypothetical protein, ev=9e-77,
57% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603836.1"
/db_xref="GI:94984472"
/db_xref="GeneID:4057447"
/translation="MTDDTRQRTPDTHETPEELRDILPELAGEPDEDPVLDAQEAEQE
RLSAALDSGNVGEAEEGEDEYVDADDLFNLLGELKEMLEAQSKEIRGLRREMRELRES
QGNQGSFRPREDRQGSFRPREDRGGYQGGDRGDFRPREDRQGGFRPREDRGGFRGDRE
GGYQGGFRPRDDRQGSFRPREDRGGYQGGDRGGFRPRDDRQGGFRPREDRGTYGDREF
RPREGGDTGEGFRPRARADRGWGNKRRDEE"
gene complement(370256..372250)
/locus_tag="Dgeo_0365"
/db_xref="GeneID:4057448"
CDS complement(370256..372250)
/locus_tag="Dgeo_0365"
/note="PFAM: peptidase S9, prolyl oligopeptidase active
site region: (6.5e-57) WD40-like beta Propeller:
(3.2e-07);
KEGG: dra:DR0165 acyl-peptide hydrolase, , ev=0.0, 68%
identity"
/codon_start=1
/transl_table=11
/product="peptidase S9, prolyl oligopeptidase active site
region"
/protein_id="YP_603837.1"
/db_xref="GI:94984473"
/db_xref="InterPro:IPR000379"
/db_xref="InterPro:IPR001375"
/db_xref="InterPro:IPR011659"
/db_xref="GeneID:4057448"
/translation="MAHSNPAMPGPESLLALAFPSDPQVSPDGQRVVFVLSRIEEEDP
QRPDPAFARPRYKSQLWLSGGGEAQPLTRGEGRDSSPRWSPDGQTLAFVREEGGQKGQ
LFLLPLTGGEAKRITRFRGAVQDVQWSPDGRFLTFLSTADDEDRRDERGEARVITRPR
YRFNGRDWLPERPARLWRYDVAAEELHEWLTPDVEVTGYAWWPDSRGVLLVSSRSEED
AAHWRQEANTLHLDGERTHLTRWNSAIDAVIPHPDGQRFALVGRPEGKGSPEDHHLFL
VGPDGAWQRLDEGWDRPIGNLVGGDCHVGAFPSRPVWLDAETLLVSSTVGGACGLFRV
RLDGTVTAQDHDPQAVIAAFTARGDGVALIRERADRFPEVELNGLQVTALHRRLPFPT
RTPRRVTFTNELGEGEGWVLLPEGEGRAPALLSIHGGPHTAYGHAFMHEFQLFAARGY
GVCYGNPRGSAGYGQAWTSAIHGRWGTVDMADLLAFFDACLAAEHRLDPRRTAVMGGS
YGGYMTNWITGHTDRFQAAITDRSICNLISFGGTSDIGMRFWDDELGLNFHRSEGALR
LWDMSPLKYVENVRTPTLIIHSVLDHRCPIEQAEQWYTALKLHGVPVRFVRFPGEDHE
LSRSGRPDRRLRRLEEYLEWLEEWVPGAAQQEQRTADTRA"
misc_feature complement(370370..372232)
/locus_tag="Dgeo_0365"
/note="Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism]; Region: DAP2;
COG1506"
/db_xref="CDD:31695"
misc_feature complement(371939..372046)
/locus_tag="Dgeo_0365"
/note="WD40-like Beta Propeller Repeat; Region: PD40;
pfam07676"
/db_xref="CDD:203719"
misc_feature complement(370382..370942)
/locus_tag="Dgeo_0365"
/note="Prolyl oligopeptidase family; Region: Peptidase_S9;
pfam00326"
/db_xref="CDD:201156"
gene 372704..373807
/locus_tag="Dgeo_0366"
/db_xref="GeneID:4057449"
CDS 372704..373807
/locus_tag="Dgeo_0366"
/note="PFAM: peptidase M20: (4.5e-31) peptidase
dimerisation: (1.1e-26);
KEGG: dra:DR2493 carboxypeptidase G2, ev=1e-148, 73%
identity"
/codon_start=1
/transl_table=11
/product="peptidase M20"
/protein_id="YP_603838.1"
/db_xref="GI:94984474"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:4057449"
/translation="MGGMKLDLAAMLADLQTLVELESPSTDVVAVGRVMDVVEGWARD
LGAVTHALPGGTRQFNFGVEEGRQPVLVLMHADTVWPHGTLERLPFRVEGDRAYGPGT
YDMKAGIVGTFHALRALGGEWPAGGVQVLLTPDEEIGSLGSREHIEAAARKARAVLVV
EPPVADRHALKVGRKGVGDFRLAFHGIASHAGNKPEEGASAITEAARAVLELQALARP
EVGTTVSVGLIRGGSATNVIPAECELELDVRVSTLEEGERVAAAIHAFRPRDPRVRLE
VTGGLNRPPFERGPQTERLLAQARSIARELGFEVEGEVVGGGSDGNFTAPLSPTLDGL
GAPGDGAHAAHEHVRLDRWPDHVRLLTRLLQEV"
misc_feature 372749..373795
/locus_tag="Dgeo_0366"
/note="M20 Peptidase Glutamate carboxypeptidase, a
periplasmic enzyme; Region: M20_CPDG2; cd03885"
/db_xref="CDD:193506"
misc_feature 372926..373801
/locus_tag="Dgeo_0366"
/note="Peptidase family M20/M25/M40; Region:
Peptidase_M20; pfam01546"
/db_xref="CDD:201850"
misc_feature order(372926..372928,373013..373015,373109..373114,
373184..373186,373727..373729)
/locus_tag="Dgeo_0366"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193506"
misc_feature order(373274..373282,373301..373303,373307..373309,
373319..373324,373328..373333,373376..373399,
373406..373414,373418..373420,373442..373444,
373448..373450)
/locus_tag="Dgeo_0366"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193506"
gene 373809..374108
/locus_tag="Dgeo_0367"
/db_xref="GeneID:4057450"
CDS 373809..374108
/locus_tag="Dgeo_0367"
/note="KEGG: dra:DR2491 hypothetical protein, ev=3e-30,
64% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603839.1"
/db_xref="GI:94984475"
/db_xref="GeneID:4057450"
/translation="MFGLFGRKKTAANPYVQQEDPQTFRVRVRTLRHGDVVEFRFTKA
AHIGVDEGGGYLFRKPVVSSEHFDRGELVVRFDARYNVTATEGEGVEFIPVSEWV"
gene complement(374154..374810)
/locus_tag="Dgeo_0368"
/db_xref="GeneID:4057451"
CDS complement(374154..374810)
/locus_tag="Dgeo_0368"
/note="PFAM: LmbE-like protein: (1.2e-46);
KEGG: dra:DR0081 hypothetical protein, ev=1e-93, 76%
identity"
/codon_start=1
/transl_table=11
/product="LmbE-like protein"
/protein_id="YP_603840.1"
/db_xref="GI:94984476"
/db_xref="InterPro:IPR003737"
/db_xref="GeneID:4057451"
/translation="MSETPLKLLLIVPHPDDEVYGAAGTLMDLLDEGHPCGLVTLTRG
EAGRTLGLCDGPEELARMRAAELRACLDVIGLTVHEQFDFPDKHLAEQPFGPLVEVAR
EAMRRHRPEIVLTFPPNGSNGHPDHVTTHRAVRGAWETLPKDERPRLWYYASDTPPDN
EALRAAWLPPNIRRDVMHHVTRKLQAIACHRTQALSTVDFIRKFPERITQETFHEVRE
"
misc_feature complement(374187..374798)
/locus_tag="Dgeo_0368"
/note="Uncharacterized proteins, LmbE homologs [Function
unknown]; Region: COG2120"
/db_xref="CDD:32303"
gene 374886..375881
/locus_tag="Dgeo_0369"
/db_xref="GeneID:4057452"
CDS 374886..375881
/locus_tag="Dgeo_0369"
/note="PFAM: GCN5-related N-acetyltransferase: (7.9e-12);
KEGG: sma:SAV6566 acetyltransferase, ev=6e-25, 31%
identity"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_603841.1"
/db_xref="GI:94984477"
/db_xref="InterPro:IPR000182"
/db_xref="GeneID:4057452"
/translation="MNRADFVLRAPRKPDDYPDVAAVLCAADPEWPVTPELLRAWDEA
RDPNLFLTEVVAEQAGRVVGVGRLGHDDFAFEEGRYWGSLSVHPDARGRGIGGALYAE
LLKQVQARGARELRTMLSDQAHHAPGRAFLDRRGFRPVWERYESRLDTRQVDLGGFDG
LLATVAADGVELRSIAALAADPERDRRLWELDWQLFQDVPLGTVLTKRPFEAWVKQEL
EDPTFAPELSFVALRPDLDDPLTGPYVGYSTLGRNPAGFFSIGMTGVRRADRGRGIAK
ALKVAAMRALAAAGGGEIRTFNDRPNVAMLEMNRALGFVRGPTHLRYELKLGGPA"
misc_feature 375045..375233
/locus_tag="Dgeo_0369"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature 375048..375854
/locus_tag="Dgeo_0369"
/note="mycothiol synthase; Region: mycothiol_MshD;
TIGR03448"
/db_xref="CDD:132489"
misc_feature order(375135..375143,375171..375176)
/locus_tag="Dgeo_0369"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 375878..376855
/locus_tag="Dgeo_0370"
/db_xref="GeneID:4057453"
CDS 375878..376855
/locus_tag="Dgeo_0370"
/note="PFAM: GCN5-related N-acetyltransferase: (1.4e-10);
KEGG: dra:DR1057 phosphinothricin acetyltransferase, ,
ev=1e-71, 49% identity"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_603842.1"
/db_xref="GI:94984478"
/db_xref="InterPro:IPR000182"
/db_xref="GeneID:4057453"
/translation="MTLTIREAGEADSPALAAIISAANPNHPTTAETLRHEIQDLLGH
PLHPHLYQLIAERDGRALGEAAAYQLPGMFHPDRYHVEVMVCPEAEGQGVGRALAQAL
EVHLTARGARELLAGTYENHPRGLTFLARHGFTEVMRFFDNVLDLDTFDPAPWVKAAR
LPEGLRLLSLPELIAEQGEETAWRAYYAAFAEVREDVPRTGEATPTPYEVFRQRGERP
QFLAEGVLLAVTAAGEVAALSELYGDGADPGRLNTGLTGTRRAYRRQGLALALKLAAI
ALARQRGARWIWTGNATTNVPMLTPNERLGFRPRPAWIEMRRGHVAGGG"
misc_feature 375884..376282
/locus_tag="Dgeo_0370"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:205482"
misc_feature 376034..376219
/locus_tag="Dgeo_0370"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(376124..376132,376160..376165)
/locus_tag="Dgeo_0370"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 377034..377759
/locus_tag="Dgeo_0371"
/db_xref="GeneID:4057454"
CDS 377034..377759
/locus_tag="Dgeo_0371"
/note="KEGG: dra:DR1210 hypothetical protein, ev=5e-81,
65% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603843.1"
/db_xref="GI:94984479"
/db_xref="InterPro:IPR006035"
/db_xref="GeneID:4057454"
/translation="MLLCGGDPLMLLSIDWDAFSGCVPLVFDAPIWGTRDRAYDRLGA
WWDRARKRDPRAPGWTALEADFPLYPGWEVLECYAGIPASVTLTHADAWDWLAHFPPG
DMLNVDSHHDLASFSGDPARVRPGNWAGLGLRAGRLNRYTCLYPDWHTALPVAEGFDL
ERTRAELVPLLPPDVLDRVTLTRMPAPGAGLPDPSLVTALLLVQSPAWTNPAHDAVFW
GLVRALRAEVLTPPLDRSGAAYP"
gene 377827..378372
/locus_tag="Dgeo_0372"
/db_xref="GeneID:4057455"
CDS 377827..378372
/locus_tag="Dgeo_0372"
/note="PFAM: protein of unknown function DUF165:
(2.1e-05);
KEGG: dra:DR0380 hypothetical protein, ev=3e-67, 78%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603844.1"
/db_xref="GI:94984480"
/db_xref="InterPro:IPR003744"
/db_xref="GeneID:4057455"
/translation="MTHSVTGRLPLGLIALYAASILLANLTLNQFIPLPVFGLLSVGT
IFFAAVFTLRDRIHRAGGLRAVYVAIGTALLVNTVAALLVGTPWRFIGASFLAILLGE
LADTAVYQSLIRKSWWTRVLTSNAVSVPLDSITFTLLAFWGTMSARDIAQIIFADILA
KYTIAALFAFRVRHAARAAAS"
misc_feature 377947..378309
/locus_tag="Dgeo_0372"
/note="Uncharacterized ACR, YhhQ family COG1738; Region:
DUF165; pfam02592"
/db_xref="CDD:190356"
gene 378369..378743
/locus_tag="Dgeo_0373"
/db_xref="GeneID:4057456"
CDS 378369..378743
/locus_tag="Dgeo_0373"
/note="KEGG: dra:DR0381 hypothetical protein, ev=3e-37,
67% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603845.1"
/db_xref="GI:94984481"
/db_xref="GeneID:4057456"
/translation="MNGPHAARLKTIPNARPHLHTVVEHVLHLPELCPVSRNPAPGST
LTLRYVAGERLLELFSLDSYVDALVGHPVVRDMEFFVQTVAQDAANAAGVEVTATAQV
CLNGLRQEQRVLVVAKPEDRET"
gene complement(378749..379891)
/locus_tag="Dgeo_0374"
/db_xref="GeneID:4057457"
CDS complement(378749..379891)
/locus_tag="Dgeo_0374"
/note="PFAM: peptidase A24A, prepilin type IV: (2.6e-12)
peptidase A24A-like: (7.5e-38);
KEGG: dra:DR2065 leader peptidase (prepilin peptidase) /
N-methyltransferase, ev=1e-156, 71% identity"
/codon_start=1
/transl_table=11
/product="peptidase A24A-like protein"
/protein_id="YP_603846.1"
/db_xref="GI:94984482"
/db_xref="InterPro:IPR000045"
/db_xref="InterPro:IPR010627"
/db_xref="GeneID:4057457"
/translation="MSLDVLLVVFAGVFGLLVGSFSNVLIHRLPRGENIAFPPSHCPQ
CNHRLAPRDLVPVGSWLSLGGRCRYCRAPIRVRYPVVEGLTGLGYALIAALFPLTTFG
AGTLGLMLLFTLLLVASVIDLDTFTIPDELTLPGVALGLAFAGWNTRAGAVAAGLPTL
AGALQGALLGAGLLVTIDLLGSWVLRRFRERQYPERPIGYQQISLGLLVGAWLGPWWG
LGAALLSAAVNVAARRVVRIPELLTLGGFLVSVALGSAGFGPGLILMVQGALAAAGAA
ALSAGVYWWLRREPLAEEDAPFDPSAMGFGDVKLAAVIGAFLGWERLLVAVVVAVFAG
ALLGLLQVALRRENRVKFGPYLALGAVVALFWGGEIVATYRGILGL"
misc_feature complement(<379460..379828)
/locus_tag="Dgeo_0374"
/note="Type II secretory pathway, prepilin signal
peptidase PulO and related peptidases [Cell motility and
secretion / Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion]; Region: PulO; COG1989"
/db_xref="CDD:32172"
misc_feature complement(379613..379825)
/locus_tag="Dgeo_0374"
/note="Bacterial Peptidase A24 N-terminal domain; Region:
DiS_P_DiS; pfam06750"
/db_xref="CDD:203513"
gene complement(379956..381413)
/gene="rimO"
/locus_tag="Dgeo_0375"
/db_xref="GeneID:4057458"
CDS complement(379956..381413)
/gene="rimO"
/locus_tag="Dgeo_0375"
/note="catalyzes the methylthiolation of an aspartic acid
residue of the S12 protein of the 30S ribosomal subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12 methylthiotransferase"
/protein_id="YP_603847.1"
/db_xref="GI:94984483"
/db_xref="InterPro:IPR002792"
/db_xref="InterPro:IPR005839"
/db_xref="InterPro:IPR005840"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:4057458"
/translation="MTRTQEPLPTVAAPKVGFISLGCPKALVDSERILTQLRAEGYEV
APNYEDAQAVIVNTCGFITPAVEESLSAIGEALDATGKVIVTGCLGERPEKILERHPK
VAAITGSEAVDDVMAHVRELLPIELDPFTGLLPVAAPGMRQGDTLAPSVKLTPRHYAY
VKIAEGCNHTCSFCIIPKLRGRQVSRDAGAVLYEAYRLIAGGTKELMIISQDTSAYGV
DLRHRTSEFQGEQVRAHLIDLAEKLGEMGAWVRMHYVYPYPHVERIVELMSQGKILPY
LDVPLQHASPAVLKRMRRPGAGKQLDTIRRWREICPELVIRSTFIVGFPGETEEDFQL
LLDFLEEARLDRVGAFTYSDVEEADANALDGAIPEEVKQERLARFMEVAQRISREKLA
EKVGRVLDVIIDEFNDDEGDEPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQVKIGDIV
QARIEDSDEYDLYGEVIHTPEWRPNVPLLGHFGKH"
misc_feature complement(380013..381395)
/gene="rimO"
/locus_tag="Dgeo_0375"
/note="ribosomal protein S12 methylthiotransferase;
Provisional; Region: rimO; PRK14862"
/db_xref="CDD:184864"
misc_feature complement(381090..381371)
/gene="rimO"
/locus_tag="Dgeo_0375"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
gene 381573..382373
/locus_tag="Dgeo_0376"
/db_xref="GeneID:4057459"
CDS 381573..382373
/locus_tag="Dgeo_0376"
/note="TIGRFAM: septum site-determining protein MinD:
(7.4e-185);
PFAM: Cobyrinic acid a,c-diamide synthase: (1e-32);
KEGG: dra:DR0752 septum site-determining protein,
ev=1e-122, 84% identity"
/codon_start=1
/transl_table=11
/product="septum site-determining protein MinD"
/protein_id="YP_603848.1"
/db_xref="GI:94984484"
/db_xref="InterPro:IPR002586"
/db_xref="InterPro:IPR010223"
/db_xref="GeneID:4057459"
/translation="MNAKVIVVTSGKGGVGKTTTTANIGAALAKLGEKVAVIDVDVGL
RNLDVVMGLESRVVFDLIDVLEGKCRLSQALIRDKRVENLYLLPASQTRDKEALDPEV
FKDVVRQLLEEEGFDRVLIDSPAGIESGFKTAAAPAQGALVVVNPEVSSVRDADRIIG
LLEAQQVRDIRLVINRLRPKMVASGNMLSEADILEILGVKPIGIIPEDDGILVSTNVG
EPAVLGKTKAGQAFLDTARRLKGEDVPYPSLEENRGFLAALMRLFGRA"
misc_feature 381636..382361
/locus_tag="Dgeo_0376"
/note="septum site-determining protein MinD; Region:
minD_bact; TIGR01968"
/db_xref="CDD:131023"
misc_feature 381636..382268
/locus_tag="Dgeo_0376"
/note="Bacterial cell division requires the formation of a
septum at mid-cell. The site is determined by the min
operon products MinC, MinD and MinE. MinC is a nonspecific
inhibitor of the septum protein FtsZ. MinE is the
supressor of MinC. MinD plays a pivotal...; Region: MinD;
cd02036"
/db_xref="CDD:73299"
misc_feature 381687..381695
/locus_tag="Dgeo_0376"
/note="Switch I; other site"
/db_xref="CDD:73299"
misc_feature 381936..381950
/locus_tag="Dgeo_0376"
/note="Switch II; other site"
/db_xref="CDD:73299"
gene 382375..382632
/locus_tag="Dgeo_0377"
/db_xref="GeneID:4057460"
CDS 382375..382632
/locus_tag="Dgeo_0377"
/note="TIGRFAM: cell division topological specificity
factor MinE: (9.7e-27);
PFAM: Septum formation topological specificity factor
MinE: (4.7e-06);
KEGG: dra:DR0751 cell division topological specificity
factor, ev=9e-28, 78% identity"
/codon_start=1
/transl_table=11
/product="cell division topological specificity factor
MinE"
/protein_id="YP_603849.1"
/db_xref="GI:94984485"
/db_xref="InterPro:IPR005527"
/db_xref="GeneID:4057460"
/translation="MFSWLKGRRSKDTLKDRLELVLAYDRAQIPPGKVDALRNDLLEV
VKRYFPAGSSNVEVEQRGDQVVLMASIALDEGIENPGRRER"
misc_feature 382375..382599
/locus_tag="Dgeo_0377"
/note="cell division topological specificity factor MinE;
Region: minE; TIGR01215"
/db_xref="CDD:188120"
gene 382694..383569
/locus_tag="Dgeo_0378"
/db_xref="GeneID:4057461"
CDS 382694..383569
/locus_tag="Dgeo_0378"
/note="PFAM: short-chain dehydrogenase/reductase SDR:
(7.7e-08);
KEGG: bld:BLi01190 hypothetical protein, ev=6e-52, 43%
identity"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_603850.1"
/db_xref="GI:94984486"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4057461"
/translation="MNGGTMDVQQPLTGKVALVTGASRGLGRATALELAAAGAHVILT
ARSTRGHSTVPALPGTTVDDTADAIRAAGGQATPLQCDHTDPAQVEAVIRHVAQMHGR
LDVLVNNAWGAHEGGAGAGSGAEVWDEPFDGLRNMLLAGAYSDYVTSLLALKQVMGGQ
GYGLIVSTTWHTDEPPGWLPYEVSKAAKNRLVYALAHKLQGKGIAVVGVAPGWMRTEL
MRLHHAEQELAGQTETPHYAARGIVALARDPQVSRHSGRILDVGELADLYGITDLDGT
QPHWYAERRRQSTAE"
misc_feature 382712..383551
/locus_tag="Dgeo_0378"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 382727..383476
/locus_tag="Dgeo_0378"
/note="Dehydrogenases with different specificities
(related to short-chain alcohol dehydrogenases) [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only]; Region: FabG; COG1028"
/db_xref="CDD:31231"
misc_feature order(382754..382756,382760..382765,382769..382771,
382826..382834,383018..383026,383189..383197,
383234..383236,383246..383248,383324..383335)
/locus_tag="Dgeo_0378"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(383114..383116,383195..383197,383234..383236,
383246..383248)
/locus_tag="Dgeo_0378"
/note="active site"
/db_xref="CDD:187535"
gene 383648..384592
/locus_tag="Dgeo_0379"
/db_xref="GeneID:4057462"
CDS 383648..384592
/locus_tag="Dgeo_0379"
/note="PFAM: aldo/keto reductase: (2.3e-68);
KEGG: dra:DR2317 potassium channel, beta subunit, ,
ev=1e-149, 81% identity"
/codon_start=1
/transl_table=11
/product="aldo/keto reductase"
/protein_id="YP_603851.1"
/db_xref="GI:94984487"
/db_xref="InterPro:IPR001395"
/db_xref="InterPro:IPR005399"
/db_xref="GeneID:4057462"
/translation="MEYRNLGRSGLKVSEVALGGWVTFGHSVNDQQMVRDIVMKAYEE
GVNFFDQADVYARGKSEEMMGAVLRELPRHTLVISSKVYWPMSDDVNDRGLSRKHILE
SIDGSLKRLGTDYLDIYFAHRYDENVPMDEIVMAFDQVIRSGRALYWGTSMWPAARIA
EAVEFARAHGLHAPVTEQPEYSMLRRDRVEHEILPYTERAGVGLVVWSPLAMGLLTGK
YDEGRPEGARLTENENWGQNFLTEENIQKVRDLKPIADELGITRAQLAVAWILRQKGV
SSVITGATKVGQIEDTVKAAGIKLPEDVLHRVDEILSR"
misc_feature 383648..384589
/locus_tag="Dgeo_0379"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature 383654..384580
/locus_tag="Dgeo_0379"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature order(383702..383710,383795..383797,383810..383812,
383888..383890,384011..384016,384101..384106,
384179..384181,384266..384283,384434..384436,
384485..384496,384509..384511,384518..384523)
/locus_tag="Dgeo_0379"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(383795..383797,383810..383812,383888..383890,
384011..384013)
/locus_tag="Dgeo_0379"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(384666..386357)
/locus_tag="Dgeo_0380"
/db_xref="GeneID:4057463"
CDS complement(384666..386357)
/locus_tag="Dgeo_0380"
/note="KEGG: dra:DRB0034 GGDEF family protein, ev=3e-33,
42% identity;
TIGRFAM: GGDEF domain: (9.9e-32);
PFAM: GGDEF: (3.1e-45) Tetratricopeptide TPR_4: (0.003);
SMART: Tetratricopeptide region: (0.18)"
/codon_start=1
/transl_table=11
/product="diguanylate cyclase"
/protein_id="YP_603852.1"
/db_xref="GI:94984488"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR011717"
/db_xref="InterPro:IPR013026"
/db_xref="GeneID:4057463"
/translation="MKPARRPQPVPLPPDAPLQLREALNAARIATASAYLALARHYRN
HSLTVAFALAQEALEAALSAEAPAATVEVLAGLAFIEVAQGRQEAAFEHLALALDLVH
QYDLRHLEAQVRNNRAVARLSVGDTVGARRDLLDAQLLAQAAGDLVDVAHAHVNLAFL
ENVTGQPEEALHQLNLLEELLPSLPDEATRQSLALYLHENRAHSYLNLVQQARERGRS
AAEAEARAQAHAEIQATREGLAQQPAGLIALTTEAHAARLALLEGDLEQAEQHARAAL
DHHNQLGQQIYLEAHLVMAEVSAAQGQPEQAHAHYRAALDSARYQNRHRETQAVLRAI
ARLYEQQGNLPAALNTYRDALERAQLALDRLAHIEQRHADLTRELHQARAEARGWQES
VRRAEAQARQDALTGLLNRRGLQDSLAQLTPDAAPLLLALFDIDDFKSVNDHHSHATG
DAALQGVANRLSALAPEGSLLARYGGEEFLLVLPGANPAEAPALIERLRQGIEVHNWS
PLLPGMSLTVSAGYTLTEGLDDASLHAAFQQADDHLYQAKRAGRNRIYPPPNEPS"
misc_feature complement(385290..385592)
/locus_tag="Dgeo_0380"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
misc_feature complement(order(385296..385298,385305..385307,
385317..385319,385353..385355,385416..385418,
385425..385427,385437..385439,385473..385475,
385533..385535,385542..385544,385554..385556,
385590..385592))
/locus_tag="Dgeo_0380"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(order(385335..385340,385347..385352,
385359..385364,385458..385463,385470..385475,
385479..385484,385584..385589))
/locus_tag="Dgeo_0380"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(385281..385496)
/locus_tag="Dgeo_0380"
/note="Tetratricopeptide repeat; Region: TPR_12;
pfam13424"
/db_xref="CDD:205602"
misc_feature complement(384690..385157)
/locus_tag="Dgeo_0380"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(384927..384929,385056..385058))
/locus_tag="Dgeo_0380"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(384924..384935,384939..384941,
385005..385007,385017..385019,385029..385034,
385041..385043))
/locus_tag="Dgeo_0380"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(384867..384869,384951..384953))
/locus_tag="Dgeo_0380"
/note="I-site; other site"
/db_xref="CDD:143635"
gene 386449..387444
/locus_tag="Dgeo_0381"
/db_xref="GeneID:4057464"
CDS 386449..387444
/locus_tag="Dgeo_0381"
/note="PFAM: ABC transporter related: (2.5e-47);
SMART: ATPase: (2.4e-16);
KEGG: dra:DR2316 ABC transporter ATP-binding protein,
ev=1e-131, 76% identity"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_603853.1"
/db_xref="GI:94984489"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4057464"
/translation="MVEAELTLAPYAGGVAAIETRDLRKVYRGRAVVDGLSLTVGEGE
VFGFLGPNGAGKSTTVKMLLGLVQPSGGEVRVLGGSPADPAVRARLGFLPEQFRFQTW
MTGEEFLRFHGRLAGLTGAELQARVPEVLGVVGLRGRGDELLGGYSKGMLQRVGLAGA
ILARPRLVFLDEPTSALDPIGRVEVREIIERLRAEGVTVFLNSHLLAEVEQVCDRVAF
VKAGRVLRQGTMRELMGGVLPVNVRVDRLTPELLASLARVGEVRHTDTAVPGRAEIEL
WLTHEDALPALAEAVHAQGARLYALIPRRPDLETMFLELIEDSPEAAPGQERVYA"
misc_feature 386491..387399
/locus_tag="Dgeo_0381"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:31326"
misc_feature 386500..387120
/locus_tag="Dgeo_0381"
/note="This family of ATP-binding proteins belongs to a
multisubunit transporter involved in drug resistance (BcrA
and DrrA), nodulation, lipid transport, and lantibiotic
immunity. In bacteria and archaea, these transporters
usually include an ATP-binding...; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:72989"
misc_feature 386596..386619
/locus_tag="Dgeo_0381"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72989"
misc_feature order(386605..386610,386614..386622,386731..386733,
386959..386964,387058..387060)
/locus_tag="Dgeo_0381"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72989"
misc_feature 386722..386733
/locus_tag="Dgeo_0381"
/note="Q-loop/lid; other site"
/db_xref="CDD:72989"
misc_feature 386887..386916
/locus_tag="Dgeo_0381"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72989"
misc_feature 386947..386964
/locus_tag="Dgeo_0381"
/note="Walker B; other site"
/db_xref="CDD:72989"
misc_feature 386971..386982
/locus_tag="Dgeo_0381"
/note="D-loop; other site"
/db_xref="CDD:72989"
misc_feature 387046..387066
/locus_tag="Dgeo_0381"
/note="H-loop/switch region; other site"
/db_xref="CDD:72989"
gene 387437..388309
/locus_tag="Dgeo_0382"
/db_xref="GeneID:4057465"
CDS 387437..388309
/locus_tag="Dgeo_0382"
/note="KEGG: dra:DR2315 hypothetical protein, ev=1e-106,
67% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603854.1"
/db_xref="GI:94984490"
/db_xref="GeneID:4057465"
/translation="MRNALLIAELSLREAMRKRLVLVLLLLTAAFLGFYLFGVFKLEA
TLDQRALEAGLEERSVTGAANLPVMYAAMFGMYLVYFLGALMAVLSTVGAISGDVESG
VMQSILARPIRRAQLVLGRWLGFTAVNVLYVSLVSGALLGGVWLITGFLPPAPLLAVG
LILLAITLITALTVLGSTLWTTLANGIGVFVLYGVGFAGGVLASIGTFAASPTLVTLG
RLANTLMPTNALWLGASYHLQPDVLRQLGDMTRGANPIFSTTPIAPGLVLWAVLYAVA
AVLVAMWRFSRRDL"
misc_feature 387605..>387874
/locus_tag="Dgeo_0382"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
gene complement(388290..388649)
/locus_tag="Dgeo_0383"
/db_xref="GeneID:4057466"
CDS complement(388290..388649)
/locus_tag="Dgeo_0383"
/note="KEGG: dra:DR2314 hypothetical protein, ev=5e-20,
49% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603855.1"
/db_xref="GI:94984491"
/db_xref="GeneID:4057466"
/translation="MQREVSSGALIEVRGAWHGHVGDPRRRFAGVVTASDLPDVRVGA
SVMVTYHAAPGRTPGAHEHGTYTLDVGGRTLPLMRFTCHDTGTTGEEGNNDTAEATWQ
AVTLPGSTPTGSTGRGG"
gene complement(388701..389141)
/locus_tag="Dgeo_0384"
/db_xref="GeneID:4057467"
CDS complement(388701..389141)
/locus_tag="Dgeo_0384"
/note="KEGG: dra:DR2229 hypothetical protein, ev=1e-26,
51% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603856.1"
/db_xref="GI:94984492"
/db_xref="GeneID:4057467"
/translation="MLDNILNQMRRSAERVQRRGEELTQSTRLRLEVFGLSRELEGLY
ARLGRAYHAGADSEVLQGIQDEIRRVDEEISARERLIQELSHDAGHQPVSPNPTTQSS
DDLTVPEKAIGEQGNGLDWASPGKASSHRNREPLDSERQRERER"
gene 389245..390357
/locus_tag="Dgeo_0385"
/db_xref="GeneID:4057468"
CDS 389245..390357
/locus_tag="Dgeo_0385"
/note="PFAM: protein of unknown function DUF182:
(1.2e-22);
KEGG: sma:SAV1536 xanthine dehydrogenase accessory factor,
ev=1e-47, 38% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603857.1"
/db_xref="GI:94984493"
/db_xref="InterPro:IPR003777"
/db_xref="GeneID:4057468"
/translation="MNAAETRALLTALTAALARGQRAAIATVVGVRGSAYRREGTRML
VLDDGAQVCMLSGGCLEAEVVEVALEVIRSGLPALTHYDLSEDATWGLGIGCGGSVDV
RVERVDPADPVTAAWLAALEEGRAAALAVPLVGEGRVLFLPGGEVTGHLPDERLHAFA
VGAAQERLGLREPRAVTLAGPDGTPIFIDVNVPPPQLILYGAGHDAIPLAAQAHALGY
DVHVIDPRPAYLTPGRFPGAALHDLAPEELHRLTPGERAHLIVMNHHLARDRMCLAHA
LRSGAAYVGVLGPRSRAEDLLRDLAAEGVTFTPEQLARLRSPVGLRLGAEAPEEVALS
ILAELMAWRRGYDGGFLSGHTGRIHDADTHAPFPRS"
misc_feature 389326..390336
/locus_tag="Dgeo_0385"
/note="Xanthine and CO dehydrogenases maturation factor,
XdhC/CoxF family [Posttranslational modification, protein
turnover, chaperones]; Region: XdhC; COG1975"
/db_xref="CDD:32158"
misc_feature 389326..389496
/locus_tag="Dgeo_0385"
/note="XdhC and CoxI family; Region: XdhC_CoxI; pfam02625"
/db_xref="CDD:202317"
misc_feature 389833..390261
/locus_tag="Dgeo_0385"
/note="XdhC Rossmann domain; Region: XdhC_C; pfam13478"
/db_xref="CDD:205656"
gene 390546..391049
/locus_tag="Dgeo_0386"
/db_xref="GeneID:4057469"
CDS 390546..391049
/locus_tag="Dgeo_0386"
/note="regulator of RNase E; increases half-life and
abundance of RNAs; interacts with RNase E possibly
inhibiting catalytic activity"
/codon_start=1
/transl_table=11
/product="ribonuclease activity regulator protein RraA"
/protein_id="YP_603858.1"
/db_xref="GI:94984494"
/db_xref="InterPro:IPR005493"
/db_xref="InterPro:IPR010203"
/db_xref="GeneID:4057469"
/translation="MTMTDTPPGSGFTPTADLSDVHPEALVLAPLLRDYGGTPRFQGL
AATVRVQDDNVLVRTALEEPGEGRVLVVDNGGSLNCAVLGGMLGQIAVQNGWAGVVVN
GCVRDVAELARLPLGIRAIAAHPRRSAKRSLGERDVPVTFAGVTLHPGDDVYADEDGL
LLLPAQR"
misc_feature 390579..391040
/locus_tag="Dgeo_0386"
/note="ribonuclease activity regulator protein RraA;
Provisional; Region: PRK09372"
/db_xref="CDD:181806"
gene 391046..391462
/locus_tag="Dgeo_0387"
/db_xref="GeneID:4057470"
CDS 391046..391462
/locus_tag="Dgeo_0387"
/note="PFAM: protein of unknown function DUF454:
(4.4e-21);
KEGG: dra:DR1457 hypothetical protein, ev=3e-47, 73%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603859.1"
/db_xref="GI:94984495"
/db_xref="InterPro:IPR007401"
/db_xref="GeneID:4057470"
/translation="MSRREPSSGELPEASSRVLRPLWVVLGFVLTVLGFLGLLLPGFP
GTVWFVLAAGAFARGNPKWEAWLLSRPVVGELVRDYRAGRGMPLRAKWIACVCIVVAV
VFSLPRIPVLAGQVAWAVLGVAGILFITLRVPTRRP"
misc_feature <391187..391453
/locus_tag="Dgeo_0387"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2832"
/db_xref="CDD:32660"
gene 391523..392527
/locus_tag="Dgeo_0388"
/db_xref="GeneID:4057471"
CDS 391523..392527
/locus_tag="Dgeo_0388"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding:
(5.4e-05);
KEGG: dra:DR1869 polyferredoxin, , ev=1e-139, 68%
identity"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_603860.1"
/db_xref="GI:94984496"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4057471"
/translation="MLGGVLDRLGEYGNPVPRYTAPRCLLERQAVGGCDACHATCPHE
AIAFGPLGQSIQLDPQRCTGCGLCVQVCPSGALEYDLTASLQAVRSAGQTGAGEATLT
CSQSGAGGPSLPCLGRVTPALVSAAGAWNTPLTLLHGECTTCPVGAPDVPERLRRVTE
EAQELRAATRQPAQVTVREATPGDRDRAGHISRRGAFVQLLRAGRQQVAQAIPERPLP
FVDWSVPEERTPEEWRWRVRTLKPAPAPDAGVHWPAPLVDDTCIDCPVCANVCPTQAI
TREQKPEGGVQLLLNLSACTGCRACLRSCPPQAIHMQEEWLAAAFHLPILLRDSDSVM
"
misc_feature 391619..391747
/locus_tag="Dgeo_0388"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
misc_feature 391685..391756
/locus_tag="Dgeo_0388"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:200947"
misc_feature <392273..392467
/locus_tag="Dgeo_0388"
/note="RPB11 and RPB3 subunits of RNA polymerase; Region:
RNAP_RPB11_RPB3; cl11409"
/db_xref="CDD:209307"
misc_feature 392303..392440
/locus_tag="Dgeo_0388"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
gene complement(392567..394240)
/locus_tag="Dgeo_0389"
/db_xref="GeneID:4057472"
CDS complement(392567..394240)
/locus_tag="Dgeo_0389"
/note="PFAM: ATP-binding region, ATPase-like: (3.7e-34)
histidine kinase A-like: (0.00028);
KEGG: dra:DRB0029 sensor histidine kinase/response
regulator, ev=7e-46, 44% identity"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_603861.1"
/db_xref="GI:94984497"
/db_xref="InterPro:IPR003006"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4057472"
/translation="MSDLTVPPPAGALHAQEVLDALASHVAIVDREGQVVMVNRAWQE
FSAQNGGDPTTTGVGSNYLRAAAPNPVLHAGLRAVLGGQRPTFQLTYPCHAPHERRWF
RVRIVPLPRNGPVTHVLVEHLNISREAHWQEELWRTRESLDRQVAARTAALQRQSEDL
ASRAGALEAFVQFTEATATTGEPTLLAQQADQVLRATLGDVAVAYYEQRGAAWVPCHW
TGGLPPEVETQLREGIPVPPTVVQEALETGQAVFRNAGSEGADAAGLFGALALLPLTL
HRPGDTLLLLGSLSQPTWSRRARDVFRAVGRSLRLALERSGQDRDLAEQRARLAELNA
ELTAYTASLSRDLRDPARRIAGFTDLLEKRLPQDDHVSQRHLSIIRAETARLQTLVED
LAQLQPFQERELQCARLALGPMVAQVRSDLVRATRERRIVWQVGELPHVYADPLLLRQ
ILTHLLHNALKFTRGRDPAQIEVGCKERTGDVLIWVRDNGVGFDPAQASRLFQVFTRL
HGEAYEGSGVGLANVRRLVHRHGGQVWAEGQPNQGACFFFTLPHAARRT"
misc_feature complement(<393623..>393826)
/locus_tag="Dgeo_0389"
/note="Membrane bound FAD containing D-sorbitol
dehydrogenase; Region: FAD-SLDH; pfam12318"
/db_xref="CDD:192984"
misc_feature complement(393053..393244)
/locus_tag="Dgeo_0389"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(393062..393064,393074..393076,
393083..393085,393095..393097,393104..393106,
393116..393118,393170..393172,393179..393181,
393191..393193,393200..393202,393212..393214,
393224..393226))
/locus_tag="Dgeo_0389"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(393206..393208)
/locus_tag="Dgeo_0389"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(392591..392869)
/locus_tag="Dgeo_0389"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(392603..392605,392609..392614,
392627..392629,392633..392635,392681..392692,
392762..392767,392771..392773,392777..392779,
392783..392785,392858..392860,392867..392869))
/locus_tag="Dgeo_0389"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(392867..392869)
/locus_tag="Dgeo_0389"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(392684..392686,392690..392692,
392765..392767,392771..392773))
/locus_tag="Dgeo_0389"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 394384..397014
/locus_tag="Dgeo_0390"
/db_xref="GeneID:4057473"
CDS 394384..397014
/locus_tag="Dgeo_0390"
/note="PFAM: helicase-like: (2.8e-13) DEAD/DEAH box
helicase-like: (2.3e-24);
KEGG: dra:DR0065 ATP-dependent helicase, , ev=0.0, 79%
identity"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase"
/protein_id="YP_603862.1"
/db_xref="GI:94984498"
/db_xref="InterPro:IPR001410"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="GeneID:4057473"
/translation="MFSPPSPYARLEGFLRDILGGGAVLLHEEEAAPARTLRAADLGW
SEAVRRGFGFPEVYSHQAETYHLLRGGEHVIVTTPTASGKTGAFFPAVFERLEGDPQA
TALFVYPLVALGQDQRDKLRGFCERGGFGWEIGAFQGGAQPAEVFRENVRMVTATPDK
LHWSLTQPRVRDFLRRLAFLVLDEAHTYRGGFGSEVAGMLRRLLDLARALGARPQVVL
STATIGNPAEFARELVGVDAVEVSESGAARYGKRYYLADHRGQPRRFWDAVVSASVQR
DLKVLAFFRGRSRAARLYSTYRAQPLSRSHVHLYMAGTSDREGRLTEFRRASSGVMFA
TNALEAGVDIGDLEVVIIDGYPGSRMAFRQMAGRAGRVAPGLVLYLPALNEQGVPQPV
DAFYSNAGNFRELVTGPIEKAVVEAENPYLSPRHRARANEERKAAGLSADVSPGPKYW
NLRGEGSAKFAVIEESEWALQGARAFEAPLESPSQHYALTEKHEGAIFTLDGQGYKVT
RWEEHPLGTAILVEKFDAANLFTRGLYTIEVNPVRMGEWVRRGPLAYRHGEVVIRRRY
TGYMLMRQVFERVCTGCDREPDPTERVCRSCGGRIQDRMQDHKLSEHLYDEPLELPPF
RTSALEIGVDARATEKPSAVAHTLKHLLQKLTPERVACDENDLAGAFRPDRDNYFFLY
DDWLGGLGVARRAFENMDDLLRRALDLTAKACCKEAQGCYECIAVSRCYAPFLASGER
RPTDKHATRVFLEALLGVAAPLPEPDAATLPEVPALPPAWPLQARELLDLHGLSLPEV
SARLGIPSRELQRAVSTTEPLRLRHAKFGEGVFLQGFGQGDRREVLVYFPGVGQKRLL
LKYAGLTVIERPSVAALPRS"
misc_feature 394384..396843
/locus_tag="Dgeo_0390"
/note="Distinct helicase family with a unique C-terminal
domain including a metal-binding cysteine cluster [General
function prediction only]; Region: COG1205"
/db_xref="CDD:31398"
misc_feature 394597..395052
/locus_tag="Dgeo_0390"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 394624..394638
/locus_tag="Dgeo_0390"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 394930..394941
/locus_tag="Dgeo_0390"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 395137..395502
/locus_tag="Dgeo_0390"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(395236..395247,395305..395310,395386..395394)
/locus_tag="Dgeo_0390"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(395410..395412,395473..395475,395485..395487,
395494..395496)
/locus_tag="Dgeo_0390"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 396322..396558
/locus_tag="Dgeo_0390"
/note="Domain of unknown function (DUF1998); Region:
DUF1998; pfam09369"
/db_xref="CDD:204215"
gene 397070..397143
/locus_tag="Dgeo_R0012"
/note="tRNA-Gln1"
/db_xref="GeneID:4057698"
tRNA 397070..397143
/locus_tag="Dgeo_R0012"
/product="tRNA-Gln"
/db_xref="GeneID:4057698"
gene 397384..397974
/locus_tag="Dgeo_0391"
/db_xref="GeneID:4057474"
CDS 397384..397974
/locus_tag="Dgeo_0391"
/note="KEGG: dra:DR0383 S-layer-like array-related
protein, ev=4e-50, 55% identity"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_603863.1"
/db_xref="GI:94984499"
/db_xref="GeneID:4057474"
/translation="MKKPAILLTLTASLLAPLATPALAAPKISAQSIIVNPVPTSLQA
QVWVDRDTSGTRTPTYRIGDRIRVSVSVNENAYVYLFYVDPDGSVGQILPNRLGGSNY
LRAGEVRTFPSASDNFVFNVGGSPGLNKVLVVASRRPLDLSELSTFRSGEPFATVKPQ
GSRQLAQALSIVVNPVEQPVPQQDWVSDVAFFNATY"
misc_feature 397555..397803
/locus_tag="Dgeo_0391"
/note="Domain of unknown function (DUF4384); Region:
DUF4384; pfam14326"
/db_xref="CDD:206494"
gene complement(398080..398883)
/locus_tag="Dgeo_0392"
/db_xref="GeneID:4057475"
CDS complement(398080..398883)
/locus_tag="Dgeo_0392"
/note="KEGG: dra:DR0043 hypothetical protein, ev=5e-81,
62% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603864.1"
/db_xref="GI:94984500"
/db_xref="GeneID:4057475"
/translation="MSQASFRPFVIRDVTDPWEMRALEDVQVQAWGYSDREVLPATMF
RIGAYTGGVVLGAYPADEASPLPFGLAYGFPALRNGQLWHHSHLLAVQPGWRGSGAAV
ALKLAQRQRALAQGLTRMTWTFDPLVARNARLNLGKLGARAVSYHPDWYALGTDRATA
FPADRLMIEWDLTRPQATRPAPPPQGQMALEGKGERPGVPRLNLDGEQVLAEVPTQVD
CLGAEARLAWRHALREALSTYLGRGYVVTNLARAGDRAFYVLTQERLTR"
misc_feature complement(398107..398856)
/locus_tag="Dgeo_0392"
/note="N-Acyltransferase superfamily: Various enyzmes that
characteristicly catalyze the transfer of an acyl group to
a substrate; Region: NAT_SF; cl00357"
/db_xref="CDD:213096"
gene complement(398880..399989)
/locus_tag="Dgeo_0393"
/db_xref="GeneID:4057476"
CDS complement(398880..399989)
/locus_tag="Dgeo_0393"
/note="PFAM: Mandelate racemase/muconate lactonizing
enzyme-like: (1.9e-09);
KEGG: dra:DR0044 N-acylamino acid racemase, ev=1e-177, 82%
identity"
/codon_start=1
/transl_table=11
/product="mandelate racemase/muconate lactonizing-like
protein"
/protein_id="YP_603865.1"
/db_xref="GI:94984501"
/db_xref="InterPro:IPR000941"
/db_xref="InterPro:IPR013341"
/db_xref="InterPro:IPR013342"
/db_xref="GeneID:4057476"
/translation="MLRIDAAEILLVRLPLKFRFETSFGVQTEKLVPLLVLHGDGVQG
LSEGTMEAAPMYREETIAGALNLLRKVFLPRVLGRTFANPQAVDAALGSFRGNRMARA
MVEMAAWDLWARTLGVPLGTLLGGNKQEVEVGVSLGIQADEAATVEVVGRHVEQGYRR
IKLKIKPGWDVQPVQAVREAFPNIRLTVDANSAYTLADSGRLAALDAYDLTYIEQPLA
WDDLLDHAELQRRLRTPLCLDESVASAPDARKGLALGAGRVINVKVARVGGHAEARRV
HDVAESFGAPVWCGGMLESGVGRAHNIHLSTLPNFRLPGDTSSASRYWATDVVNEALE
AKNGLMPVPQGPGIGVTLNRDFIASVSELDEEYRA"
misc_feature complement(398916..399971)
/locus_tag="Dgeo_0393"
/note="N-acylamino acid racemase (NAAAR), an octameric
enzyme that catalyzes the racemization of N-acylamino
acids. NAAARs act on a broad range of N-acylamino acids
rather than amino acids. Enantiopure amino acids are of
industrial interest as chiral building...; Region: NAAAR;
cd03317"
/db_xref="CDD:48192"
misc_feature complement(399003..399956)
/locus_tag="Dgeo_0393"
/note="o-succinylbenzoate synthase; Region:
menC_lowGC/arch; TIGR01928"
/db_xref="CDD:211702"
misc_feature complement(order(399111..399119,399201..399203,
399273..399275,399348..399350,399423..399425,
399498..399500,399504..399506,399822..399824,
399924..399926,399930..399932))
/locus_tag="Dgeo_0393"
/note="active site"
/db_xref="CDD:48192"
misc_feature complement(order(399153..399158,399165..399167,
399231..399233,399240..399245,399252..399254,
399321..399323,399330..399332,399336..399338,
399414..399416,399603..399605,399609..399611,
399615..399617,399621..399623,399636..399644,
399654..399656,399696..399704,399732..399734,
399777..399779,399789..399794,399810..399812,
399816..399818,399822..399836))
/locus_tag="Dgeo_0393"
/note="octamer interface [polypeptide binding]; other
site"
/db_xref="CDD:48192"
gene 400326..401818
/locus_tag="Dgeo_R0013"
/db_xref="GeneID:4057699"
rRNA 400326..401818
/locus_tag="Dgeo_R0013"
/product="16S ribosomal RNA"
/db_xref="GeneID:4057699"
gene 401932..402198
/locus_tag="Dgeo_0394"
/db_xref="GeneID:4057477"
CDS 401932..402198
/locus_tag="Dgeo_0394"
/note="PFAM: acyl-coA-binding protein, ACBP: (2.5e-37);
KEGG: dra:DR0166 acyl-CoA-binding protein, ev=4e-28, 75%
identity"
/codon_start=1
/transl_table=11
/product="acyl-CoA-binding protein"
/protein_id="YP_603866.1"
/db_xref="GI:94984502"
/db_xref="InterPro:IPR000582"
/db_xref="GeneID:4057477"
/translation="MSFELQNAFEQAQQEVQGLSEKPRNDVLLKLYALYKQGTVGDVT
GERPGGFDFVGSAKYDAWAKLRGLSREEAQREYVNLVETLKARR"
misc_feature 401944..402189
/locus_tag="Dgeo_0394"
/note="Acyl CoA binding protein; Region: ACBP; pfam00887"
/db_xref="CDD:201493"
misc_feature order(401968..401970,401977..401982,401986..401988,
401995..402000,402004..402006,402013..402018,
402022..402027,402034..402039,402088..402093,
402100..402105,402160..402162)
/locus_tag="Dgeo_0394"
/note="acyl-CoA binding pocket [chemical binding]; other
site"
/db_xref="CDD:29555"
misc_feature order(401980..401982,402025..402027,402034..402039,
402103..402105,402160..402162)
/locus_tag="Dgeo_0394"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:29555"
gene 402295..403164
/locus_tag="Dgeo_0395"
/db_xref="GeneID:4057478"
CDS 402295..403164
/locus_tag="Dgeo_0395"
/note="PFAM: protein of unknown function DUF955:
(1.6e-19);
KEGG: dra:DR0167 hypothetical protein, ev=5e-92, 66%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603867.1"
/db_xref="GI:94984503"
/db_xref="InterPro:IPR000843"
/db_xref="InterPro:IPR006025"
/db_xref="InterPro:IPR010359"
/db_xref="GeneID:4057478"
/translation="MTQGQTPPEELSADPSPETGALAPAKARMRELATAYARRLPGLD
THSLMSGLDATLTFMPMGDRDGAYDPEHRVVLINSRVRPERQRFTLAHEISHALLLGD
DDLLSDLHDAYEGERLEQVIETLCNVGAAAILMPETLIDELLARFGPSGRALAELARR
ADVSASSALYALAERTSVPVLYAVCAVSRLEAESGEERLPEKALTVRASAGSPGVKYS
LRPGTLIPDDHPVAVALETRLPITQESYVPFRSGRRMPAYVDAFPERQRVLVSFALLP
KATKGGEQDESGV"
misc_feature 402355..402975
/locus_tag="Dgeo_0395"
/note="Predicted Zn peptidase [Amino acid transport and
metabolism]; Region: COG2856"
/db_xref="CDD:32684"
gene 403148..404056
/locus_tag="Dgeo_0396"
/db_xref="GeneID:4057132"
CDS 403148..404056
/locus_tag="Dgeo_0396"
/note="KEGG: dra:DR0168 dihydropteroate synthase,
ev=1e-113, 70% identity;
TIGRFAM: dihydropteroate synthase: (1.8e-124);
PFAM: dihydropteroate synthase, DHPS: (2.2e-98)"
/codon_start=1
/transl_table=11
/product="dihydropteroate synthase"
/protein_id="YP_603868.1"
/db_xref="GI:94984504"
/db_xref="InterPro:IPR000489"
/db_xref="InterPro:IPR006390"
/db_xref="GeneID:4057132"
/translation="MSRVSDVWPRRPHRLSFGFPVPGGERTAEGWQIEWTGCAVMGVL
NVTPDSFSDGGQHATLEAALAQARAMRDAGALIIDVGGESTRPGAEPVPAEQELDRVR
PVLRALAGEGILLSVDTLKAEVAAAALAAGAHLINDVNGLRDPAMLQVCAAAGAPACI
MHMQGEPRTMQVAPHYDDVVAEVHAFLRTQAQTALAAGVPSVLLDPGLGFGKTLAHNL
TLLRALPELTAGPFPVLVGASRKRLIDFLAEVPRPADRDPGSLALHLYAARQGAALVR
AHAAGAHVQALRVEAALEDPSLAPAR"
misc_feature 403259..403945
/locus_tag="Dgeo_0396"
/note="DHPS subgroup of Pterin binding enzymes. DHPS
(dihydropteroate synthase), a functional homodimer,
catalyzes the condensation of p-aminobenzoic acid (pABA)
in the de novo biosynthesis of folate, which is an
essential cofactor in both nucleic acid and...; Region:
DHPS; cd00739"
/db_xref="CDD:29545"
misc_feature 403262..404026
/locus_tag="Dgeo_0396"
/note="dihydropteroate synthase; Region: DHPS; TIGR01496"
/db_xref="CDD:162390"
misc_feature order(403280..403282,403499..403501,403556..403558,
403562..403564,403628..403630,403760..403762,
403856..403858,403868..403870)
/locus_tag="Dgeo_0396"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29545"
misc_feature order(403799..403801,403811..403816,403931..403933,
403943..403945)
/locus_tag="Dgeo_0396"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29545"
misc_feature 403862..403870
/locus_tag="Dgeo_0396"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:29545"
gene 404067..404441
/locus_tag="Dgeo_0397"
/db_xref="GeneID:4057133"
CDS 404067..404441
/locus_tag="Dgeo_0397"
/note="TIGRFAM: dihydroneopterin aldolase: (1.7e-49);
KEGG: dra:DR0169 dihydroneopterin aldolase, ev=6e-44, 76%
identity"
/codon_start=1
/transl_table=11
/product="dihydroneopterin aldolase"
/protein_id="YP_603869.1"
/db_xref="GI:94984505"
/db_xref="InterPro:IPR006156"
/db_xref="InterPro:IPR006157"
/db_xref="GeneID:4057133"
/translation="MSRVVLEGLEFHARHGVYATEAALGARFVIDAELHWAFAGIPDE
LGAAVNYAAAYDAIQEEVTGERHQLIEVLADRIARRLLRDHPRLEAVTVRVHKPFAPL
PGVFRDVYAELTLKRAEGRPGE"
misc_feature 404070..404408
/locus_tag="Dgeo_0397"
/note="Tunnelling fold (T-fold). The five known T-folds
are found in five different enzymes with different
functions: dihydroneopterin-triphosphate epimerase
(DHNTPE), dihydroneopterin aldolase (DHNA) , GTP
cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold;
cl00263"
/db_xref="CDD:212183"
misc_feature order(404142..404144,404148..404150,404349..404351,
404403..404405)
/locus_tag="Dgeo_0397"
/note="active site"
/db_xref="CDD:29764"
gene 404438..404929
/locus_tag="Dgeo_0398"
/db_xref="GeneID:4057134"
CDS 404438..404929
/locus_tag="Dgeo_0398"
/note="KEGG: dra:DR0170 2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase, ev=3e-54,
69% identity;
TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase: (1.8e-50);
PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase,
HPPK: (1e-47)"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_603870.1"
/db_xref="GI:94984506"
/db_xref="InterPro:IPR000550"
/db_xref="GeneID:4057134"
/translation="MSARAFIALGANLGEPLVTLRRAREELSTLGTLKGVSGLYRTVP
VGGPPGQPDYFNAAVSIWTALGPADLLAALHRIEARAGRVRRERWEARVLDLDLILYG
DCVQDAPDLTLPHPRAWERAFVLAPLADLDPELSHPLTGERVRAALERVGLSGVTRVA
SVW"
misc_feature 404450..404830
/locus_tag="Dgeo_0398"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:29601"
misc_feature order(404465..404467,404561..404566,404570..404572,
404597..404599,404603..404605,404648..404650,
404660..404662,404669..404671,404684..404686,
404690..404692,404702..404704,404711..404713,
404720..404722,404726..404731,404771..404773,
404780..404785,404798..404800,404804..404806)
/locus_tag="Dgeo_0398"
/note="catalytic center binding site [active]"
/db_xref="CDD:29601"
misc_feature order(404648..404650,404660..404662,404669..404671,
404684..404686,404690..404692,404711..404713,
404726..404731,404771..404773,404780..404785,
404798..404800)
/locus_tag="Dgeo_0398"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29601"
gene 404971..405438
/locus_tag="Dgeo_0399"
/db_xref="GeneID:4057135"
CDS 404971..405438
/locus_tag="Dgeo_0399"
/note="KEGG: dra:DR1212 hypothetical protein, ev=3e-18,
35% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603871.1"
/db_xref="GI:94984507"
/db_xref="GeneID:4057135"
/translation="MSELTSPTRHSTVGRTLLWVAVLLSLLLLGFVTALSIRHNPYYS
DRAANGISKFKFIEACKEDLGHAEQLTTLKGLLQQAGQLQPGQNLHAEIAAEPRELVN
SVQAVPGGGWALSVPANISIQGQTAVLGQLGAQCAYDKAQGRTVAQLQLPGGL"
gene complement(405552..405866)
/locus_tag="Dgeo_0400"
/db_xref="GeneID:4057136"
CDS complement(405552..405866)
/locus_tag="Dgeo_0400"
/note="KEGG: dra:DR0040 hypothetical protein, ev=2e-37,
79% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603872.1"
/db_xref="GI:94984508"
/db_xref="GeneID:4057136"
/translation="MRPAYLTAARNLQLGREWAVEGDQERALDAYEEALRLLRTLPPE
RTRDVLLAHTHLAFYQTLALMGLAAGQEHLHLGVSYARSTRDPLARAIAEECLSGLDV
VL"
gene complement(406071..408236)
/locus_tag="Dgeo_0401"
/db_xref="GeneID:4057137"
CDS complement(406071..408236)
/locus_tag="Dgeo_0401"
/note="KEGG: dra:DR2063 polynucleotide phosphorylase,
ev=0.0, 81% identity;
PFAM: 3' exoribonuclease: (4.5e-43) RNA binding S1:
(7.5e-19) KH, type 1: (1.3e-09);
SMART: KH: (8.3e-09)"
/codon_start=1
/transl_table=11
/product="polynucleotide phosphorylase"
/protein_id="YP_603873.1"
/db_xref="GI:94984509"
/db_xref="InterPro:IPR001247"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR004088"
/db_xref="GeneID:4057137"
/translation="MIAKTYTTMLGGRELSIETGKLAKLASGSVTLRYGDTLLLVTAQ
AREERSTLDFLPLTVEFEERHYAVGRIPGSFHRREGRPGEHAILSARITDRQIRPLFP
KGYRQETQVIITVLSADQQNAPDVLGAIGASAALSLSDIPWNGPTACVRVGMIDGEYV
INPTSDQLTRSSLDLVVAGTRDAVNMVEAGAQGVSEETLVGAIEFAHRELQGVLDLIE
TMRAEVGREKFNFLVDSDLSTDLVPELSEAARAAGLRDALLTTKKQERSANLKALRDR
LIAERVPDPEAAGAAEQIEALKAAFAKVEKQELRRLILQEDLRADGRNSKTVRPIWIE
ARPLPRAHGSAIFTRGETQVLGVTTLGTERDELLVDNLTGETNDRFLLHYNFPPYSTG
EVKRVGGQSRREVGHGNLAKRAIRAVLPAFDDFPYVIRVVGEVLESNGSSSMATVCAG
TLSLMDAGVPIQAPVAGVAMGLVMEGEQYRILTDILGLEDALGDMDFKVCGTAEGVTA
LQMDIKVSGVTPAIMREALAQAREARLHILGKMAEVLPAPRPELSPTAPRILTLKINP
ELIGKVIGPGGKQVRELEAMGAQVTIEEDGNIRIFSADGAAAEAVRQKIEGLTREAKV
GEEYEGTVVKTAPFGAFVNLFPGQDGMLHISQMSENRVNAVEDVLNVGDRLRVKIANI
DDRGKIDLIRPELEGKIAPREPRAARAGGDRGGRPPRRE"
misc_feature complement(406149..408236)
/locus_tag="Dgeo_0401"
/note="polynucleotide phosphorylase/polyadenylase;
Provisional; Region: PRK11824"
/db_xref="CDD:183327"
misc_feature complement(407544..408227)
/locus_tag="Dgeo_0401"
/note="Polyribonucleotide nucleotidyltransferase, repeat
1; Region: RNase_PH_PNPase_1; cd11363"
/db_xref="CDD:206768"
misc_feature complement(order(408123..408125,408132..408134,
408138..408140,408144..408146,408174..408176,
408183..408185,408189..408191,408216..408218,
408222..408224))
/locus_tag="Dgeo_0401"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206768"
misc_feature complement(order(407877..407891,407901..407903,
407907..407909,407913..407915,407988..407990,
408000..408014,408021..408032,408036..408047,
408051..408053,408057..408059,408099..408101,
408105..408107,408111..408113,408117..408119,
408144..408146,408159..408176))
/locus_tag="Dgeo_0401"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206768"
misc_feature complement(407268..>407456)
/locus_tag="Dgeo_0401"
/note="Polyribonucleotide nucleotidyltransferase, RNA
binding domain; Region: PNPase; pfam03726"
/db_xref="CDD:202745"
misc_feature complement(406593..407258)
/locus_tag="Dgeo_0401"
/note="Polyribonucleotide nucleotidyltransferase, repeat
2; Region: RNase_PH_PNPase_2; cd11364"
/db_xref="CDD:206769"
misc_feature complement(order(406602..406607,406617..406619,
406629..406631,406641..406643,407220..407222,
407229..407258))
/locus_tag="Dgeo_0401"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206769"
misc_feature complement(order(406923..406931,406935..406937,
406941..406943,406947..406949,407037..407039,
407043..407045,407052..407060,407064..407075,
407082..407084,407088..407090,407136..407144,
407154..407162,407166..407168,407172..407174,
407184..407189,407211..407225,407235..407237,
407241..407243))
/locus_tag="Dgeo_0401"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206769"
misc_feature complement(order(406701..406703,406707..406709,
406743..406745,406749..406751,406767..406769,
406908..406916,407016..407018,407028..407030,
407079..407081,407085..407087))
/locus_tag="Dgeo_0401"
/note="active site"
/db_xref="CDD:206769"
misc_feature complement(406389..406568)
/locus_tag="Dgeo_0401"
/note="Polynucleotide phosphorylase (PNPase) K homology
RNA-binding domain (KH). PNPase is a polyribonucleotide
nucleotidyl transferase that degrades mRNA in prokaryotes
and plant chloroplasts. The C-terminal region of PNPase
contains domains homologous to...; Region: PNPase_KH;
cd02393"
/db_xref="CDD:29003"
misc_feature complement(order(406461..406472,406485..406487,
406494..406499,406506..406520,406524..406532,
406536..406538))
/locus_tag="Dgeo_0401"
/note="putative nucleic acid binding region [nucleotide
binding]; other site"
/db_xref="CDD:29003"
misc_feature complement(406506..406517)
/locus_tag="Dgeo_0401"
/note="G-X-X-G motif; other site"
/db_xref="CDD:29003"
misc_feature complement(406161..406364)
/locus_tag="Dgeo_0401"
/note="S1_PNPase: Polynucleotide phosphorylase (PNPase),
), S1-like RNA-binding domain. PNPase is a
polyribonucleotide nucleotidyl transferase that degrades
mRNA. It is a trimeric multidomain protein. The C-terminus
contains the S1 domain which binds ssRNA; Region:
S1_PNPase; cd04472"
/db_xref="CDD:88437"
misc_feature complement(order(406278..406280,406284..406286,
406314..406316,406338..406340))
/locus_tag="Dgeo_0401"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88437"
misc_feature complement(406218..406223)
/locus_tag="Dgeo_0401"
/note="domain interface; other site"
/db_xref="CDD:88437"
gene 408358..410439
/locus_tag="Dgeo_0402"
/db_xref="GeneID:4057138"
CDS 408358..410439
/locus_tag="Dgeo_0402"
/note="PFAM: molybdopterin oxidoreductase: (2.8e-43)
molydopterin dinucleotide-binding region: (2.1e-26)
molybdopterin oxidoreductase Fe4S4 region: (0.00016);
KEGG: dra:DR0397 molybdopterin oxidoreductase,
molybdopterin binding subunit, ev=0.0, 75% identity"
/codon_start=1
/transl_table=11
/product="formate dehydrogenase"
/protein_id="YP_603874.1"
/db_xref="GI:94984510"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR006655"
/db_xref="InterPro:IPR006656"
/db_xref="InterPro:IPR006657"
/db_xref="InterPro:IPR006963"
/db_xref="GeneID:4057138"
/translation="MTVPAPTREVLLTCPLDCPDACHLRITLARGEDGKERAVKLTGD
ANHPYTKGFACAKTVHYPARQNHPERPLFPLRRVNPKTDPEPRFERVSWDEALDDIAA
RLRRLLDTRGPASILRYNYAGTMGLMEGTHAHALWRALGTPELDETICATAGTAAWAM
GYGARYGVDPLDVPHAKLIVLWGINSLSTNVHLTPQMTAARRNGARVIHIDPYRNRTS
QYADTHLKLRPGTDAALALGVMHELFAHGWTDEAYIAQATQGAEELRAAAWEWTPERT
AEVTGLTMEEVRDLARAIGTTRPTYIRVGYGMTRHENGGTNLRAVTLIPALTGDWRHR
GGGVVLSTSGAFHLNRSRLGAAHLIRPDVPHVNMNELANALAPEAGLGALVVYNTNPA
VVAPDSARVRAGMGREDLLLVVLEQAMTETARLADYVLPATTFMEHPDVYTSYGHHWL
GYNPAVLEAPGEARPNTWVFQQLARRLGVTEPSVYWTVDELLEDLLNTDHPHLAGITP
ERLKAEGSVRLNLPEGFLPYAHGADTPSGKVQLSPAPRYREPRAVLNADYPLRLITPP
AHHFLNSTYGNLPQLTRAEGQEPHVLIHPADAEAYALSDGGDAVIISEVGQARRRVKV
TEAVQPGVAVLEGTWWGLSAPDGTSINVVTAQTLTDLGGGSTFHNTRVRVEPVTPEGQ
ARLRPGQLVSS"
misc_feature 408376..410391
/locus_tag="Dgeo_0402"
/note="Anaerobic dehydrogenases, typically
selenocysteine-containing [Energy production and
conversion]; Region: BisC; COG0243"
/db_xref="CDD:30592"
misc_feature 408394..409986
/locus_tag="Dgeo_0402"
/note="The MopB_3 CD includes a group of related
uncharacterized bacterial and archaeal
molybdopterin-binding oxidoreductase-like domains with a
putative N-terminal iron-sulfur [4Fe-4S] cluster binding
site and molybdopterin cofactor binding site. These
members...; Region: MopB_3; cd02766"
/db_xref="CDD:73330"
misc_feature order(408397..408399,408409..408411,408421..408423,
408520..408522)
/locus_tag="Dgeo_0402"
/note="putative [4Fe-4S] binding site [ion binding]; other
site"
/db_xref="CDD:73330"
misc_feature order(408526..408528,408796..408798,408802..408810,
408901..408906,408910..408912,408919..408924,
408985..408993,409051..409053,409270..409281,
409384..409389,409519..409527,409600..409608,
409615..409617,409651..409656,409669..409671)
/locus_tag="Dgeo_0402"
/note="putative molybdopterin cofactor binding site
[chemical binding]; other site"
/db_xref="CDD:73330"
misc_feature 410029..410379
/locus_tag="Dgeo_0402"
/note="The MopB_CT_3 CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative N-terminal
iron-sulfur [4Fe-4S] cluster binding site and
molybdopterin cofactor binding site. This CD is of the...;
Region: MopB_CT_3; cd02786"
/db_xref="CDD:30318"
misc_feature order(410047..410061,410065..410076,410266..410268,
410308..410310,410356..410361)
/locus_tag="Dgeo_0402"
/note="putative molybdopterin cofactor binding site; other
site"
/db_xref="CDD:30318"
gene complement(410517..410873)
/locus_tag="Dgeo_0403"
/db_xref="GeneID:4057139"
CDS complement(410517..410873)
/locus_tag="Dgeo_0403"
/note="PFAM: arsenate reductase and related: (5.8e-21);
KEGG: dra:DR0136 hypothetical protein, ev=9e-43, 70%
identity"
/codon_start=1
/transl_table=11
/product="arsenate reductase"
/protein_id="YP_603875.1"
/db_xref="GI:94984511"
/db_xref="InterPro:IPR006660"
/db_xref="GeneID:4057139"
/translation="MPAPQVQMFGLKKSAATRAAERFFKERRVKVQFVDLAQRPIAKG
ELTRFIQKFGLNALLDLESKAYERSNLAYLRTTEAGIIARIMETPELLRLPLVRGGKV
LTVGEDPEGWTQMLAE"
misc_feature complement(410556..410858)
/locus_tag="Dgeo_0403"
/note="Arsenate Reductase (ArsC) family; composed of
TRX-fold arsenic reductases and similar proteins including
the transcriptional regulator, Spx. ArsC catalyzes the
reduction of arsenate [As(V)] to arsenite [As(III)], using
reducing equivalents derived from...; Region: ArsC_family;
cd02977"
/db_xref="CDD:48526"
misc_feature complement(410529..410849)
/locus_tag="Dgeo_0403"
/note="ArsC family; Region: ArsC; pfam03960"
/db_xref="CDD:202832"
misc_feature complement(410832..410834)
/locus_tag="Dgeo_0403"
/note="catalytic residue [active]"
/db_xref="CDD:48526"
gene complement(410942..411937)
/gene="ruvB"
/locus_tag="Dgeo_0404"
/db_xref="GeneID:4057140"
CDS complement(410942..411937)
/gene="ruvB"
/locus_tag="Dgeo_0404"
/note="promotes strand exchange during homologous
recombination; RuvAB complex promotes branch migration;
RuvABC complex scans the DNA during branch migration and
resolves Holliday junctions at consensus sequences; forms
hexameric rings around opposite DNA arms; requires ATP for
branch migration and orientation of RuvAB complex
determines direction of migration"
/codon_start=1
/transl_table=11
/product="Holliday junction DNA helicase RuvB"
/protein_id="YP_603876.1"
/db_xref="GI:94984512"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR004605"
/db_xref="InterPro:IPR008823"
/db_xref="InterPro:IPR008824"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:4057140"
/translation="MTEPLDAALRPKSLAEYVGQARLKEKLGVYLQAAKGRKEALDHT
LLFGPPGLGKTTLAHIIAAELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEI
HRLGRVAEEHLYPAMEDFKLDIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRS
RFGIIEHLEYYTPEEIGTNLLRDARLLGFGLTEEAAIEIGARSRGTMRIAKRLLRRVR
DYADVAGEKTIELERAQDALDKLGLDTAGLDERDKKYLETLIHRFAGGPVGVDTLATA
ISEDALTLEDVYEPYLIQLGFIKRTPRGRVATAHAYDHLGLPVGAAESDLGLYTN"
misc_feature complement(410984..411931)
/gene="ruvB"
/locus_tag="Dgeo_0404"
/note="Holliday junction DNA helicase RuvB; Reviewed;
Region: ruvB; PRK00080"
/db_xref="CDD:178847"
misc_feature complement(411428..411886)
/gene="ruvB"
/locus_tag="Dgeo_0404"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(411773..411796)
/gene="ruvB"
/locus_tag="Dgeo_0404"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(411491..411493,411638..411640,
411770..411793))
/gene="ruvB"
/locus_tag="Dgeo_0404"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(411635..411652)
/gene="ruvB"
/locus_tag="Dgeo_0404"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(411455..411457)
/gene="ruvB"
/locus_tag="Dgeo_0404"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(410984..411208)
/gene="ruvB"
/locus_tag="Dgeo_0404"
/note="Holliday junction DNA helicase ruvB C-terminus;
Region: RuvB_C; pfam05491"
/db_xref="CDD:203257"
gene complement(412093..412782)
/locus_tag="Dgeo_0405"
/db_xref="GeneID:4057141"
CDS complement(412093..412782)
/locus_tag="Dgeo_0405"
/note="PFAM: electron transport protein SCO1/SenC:
(4.6e-09);
KEGG: dra:DR0597 hypothetical protein, ev=5e-68, 58%
identity"
/codon_start=1
/transl_table=11
/product="electron transport protein SCO1/SenC"
/protein_id="YP_603877.1"
/db_xref="GI:94984513"
/db_xref="InterPro:IPR003782"
/db_xref="GeneID:4057141"
/translation="MKWLTAALLTLAAVLGGLLLYRNLAPTPTSGTALDHPVTLPALR
LVDDQGQMTTLNASGGKLRLMFYGYVRCPDVCPATLAALKNIYAGLTPQQQARVQIQL
VTVDPVHDRPSVLRDYLNRFNPAFTGLTGDAATIDEAARVMFVANVQPQVATDHVAHQ
DQHSHEAGAAHAAHDDEVSGGATAAARIHGDQVSVVDPQGRFVRVYSNAEVIGGGLEH
DLPGLIRQYGS"
misc_feature complement(412102..412722)
/locus_tag="Dgeo_0405"
/note="Uncharacterized protein SCO1/SenC/PrrC, involved in
biogenesis of respiratory and photosynthetic systems
[General function prediction only]; Region: COG1999"
/db_xref="CDD:32182"
misc_feature complement(412162..412662)
/locus_tag="Dgeo_0405"
/note="SCO (an acronym for Synthesis of Cytochrome c
Oxidase) family; composed of proteins similar to Sco1, a
membrane-anchored protein possessing a soluble domain with
a TRX fold. Members of this family are required for the
proper assembly of cytochrome c...; Region: SCO; cd02968"
/db_xref="CDD:48517"
misc_feature complement(order(412216..412218,412555..412557,
412567..412569))
/locus_tag="Dgeo_0405"
/note="Cu(I) binding site [ion binding]; other site"
/db_xref="CDD:48517"
gene complement(412908..415364)
/locus_tag="Dgeo_0406"
/db_xref="GeneID:4057142"
CDS complement(412908..415364)
/locus_tag="Dgeo_0406"
/note="PFAM: cytochrome c oxidase, subunit III: (7.3e-11)
cytochrome c oxidase, subunit I: (6e-176);
KEGG: dra:DR2620 cytochrome c oxidase, subunit I / III,
ev=0.0, 82% identity"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase subunit I"
/protein_id="YP_603878.1"
/db_xref="GI:94984514"
/db_xref="InterPro:IPR000298"
/db_xref="InterPro:IPR000883"
/db_xref="GeneID:4057142"
/translation="MTVQHAPQTVVTPRRGAWEVIKDYMMTTDHKKIGLLYIMTSILA
FGIGGLLAVAIRLQLALPNETFLVGHLYNQVLTLHAAVMIFFFLIPIGLFGFGNFLLP
LQLGVRDVALPRVNTFAVWLFIFSLILVITGLWNGGAPGVGWTFYYPLSVDANQTGVS
VFMVALILNGIGSLLGSANFAATVINMRAPGMGLWKMPIFTWSIFATSLLQLVSLGGL
TAAALVTYLEIKLGLSMFNPGIGGTPILMQQFFWFYSHPAVYVMLLPYLGIAAEIAST
FARKPLFGYRVMVYSLLGIVLVSLLVWAHHMFAVGLPESWQIAFAVATLLVAVPTGVK
IFNLIGTLWGGRILMKTPTYWLVGFIFNFLVGGITGVSLGMIPFDYQVTMSYYVVAHF
HNVMMFGTAFLAFGGIAYWWPKMTGRFLDEKLGLWHFWLVMVGSWMTFLPQYILGLLG
MPRRYYTYPAGNFAWTELNFISTLGALTLLAGGLVWAYNMLQSLRRPITASPNPWGGF
TLEWTAASPPAPYNFAHEFPRNFPTERPLYDWEKNGEKLIPVDPKTIHLPQDSIWPFM
TAFSLLLMGYGLSFGWFTNYTPAGGLQPFFSAPPSHVFASIVLYLSIPLFLYSLFKWA
GTREYAVPVEHHHLTKYDNGFMGMAWFILSEVGLFGVLIAGYVYLRISGHAEPPAMRP
SIWLAALNTLILVTSSFVIHKAEQDHHHGRYTWFRLGLFITLLLGTLFMIFQVYEFSL
FGTESDWKQNLWQSCFFIIVGLHGLHILIGGTGVALPYYQALTGKMDKYNHGSTAPAS
LYWHLVDVVWLFIVAIFYAW"
misc_feature complement(413625..415322)
/locus_tag="Dgeo_0406"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 1 [Energy production and conversion]; Region:
CyoB; COG0843"
/db_xref="CDD:31185"
misc_feature complement(413793..415295)
/locus_tag="Dgeo_0406"
/note="Heme-copper oxidase subunit I. Heme-copper
oxidases are transmembrane protein complexes in the
respiratory chains of prokaryotes and mitochondria which
catalyze the reduction of O2 and simultaneously pump
protons across the membrane. The superfamily is...;
Region: Heme_Cu_Oxidase_I; cl00275"
/db_xref="CDD:206949"
misc_feature complement(order(414816..414818,414828..414830,
414846..414851,415008..415010,415017..415019,
415038..415040,415071..415073,415254..415256))
/locus_tag="Dgeo_0406"
/note="D-pathway; other site"
/db_xref="CDD:29930"
misc_feature complement(order(413907..413909,414003..414008,
414174..414179,414186..414188,414207..414209,
414933..414935,415101..415103,415113..415118,
415128..415130,415149..415151,415197..415199,
415209..415211))
/locus_tag="Dgeo_0406"
/note="Low-spin heme binding site [chemical binding];
other site"
/db_xref="CDD:29930"
misc_feature complement(order(414006..414008,414213..414218,
414228..414230,414618..414623,414636..414638))
/locus_tag="Dgeo_0406"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29930"
misc_feature complement(order(414192..414194,414447..414452,
414597..414599))
/locus_tag="Dgeo_0406"
/note="Binuclear center (active site) [active]"
/db_xref="CDD:29930"
misc_feature complement(order(414363..414365,414372..414374,
414447..414452,414552..414554,414585..414587,
414597..414599))
/locus_tag="Dgeo_0406"
/note="K-pathway; other site"
/db_xref="CDD:29930"
misc_feature complement(order(414003..414008,414213..414218,
414447..414449))
/locus_tag="Dgeo_0406"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29930"
misc_feature complement(412911..413459)
/locus_tag="Dgeo_0406"
/note="Heme-copper oxidase subunit III. Heme-copper
oxidases are transmembrane protein complexes in the
respiratory chains of prokaryotes and mitochondria which
couple the reduction of molecular oxygen to water to,
proton pumping across the membrane. The...; Region:
Heme_Cu_Oxidase_III_like; cd00386"
/db_xref="CDD:29484"
misc_feature complement(order(413091..413093,413103..413105,
413112..413117,413379..413384,413394..413396,
413436..413441))
/locus_tag="Dgeo_0406"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29484"
gene complement(415361..416668)
/locus_tag="Dgeo_0407"
/db_xref="GeneID:4057143"
CDS complement(415361..416668)
/locus_tag="Dgeo_0407"
/note="PFAM: cytochrome c oxidase, subunit II: (6.3e-09)
cytochrome C oxidase subunit II, transmembrane region:
(0.0021);
KEGG: dra:DR2619 cytochrome c oxidase, subunit II,
ev=5e-83, 52% identity"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase subunit II"
/protein_id="YP_603879.1"
/db_xref="GI:94984515"
/db_xref="InterPro:IPR001505"
/db_xref="InterPro:IPR002327"
/db_xref="InterPro:IPR002429"
/db_xref="InterPro:IPR009056"
/db_xref="InterPro:IPR011759"
/db_xref="GeneID:4057143"
/translation="MSGASAQNPRQRFRLNAKKGVMLNTKHSRHRRGQRRGGFPRWAR
AGLLGMAAALLTGCQSQQLLTLGDMSSAYNREILWMSIPAIALSIIIFVGVSWALFYT
VRKFREENNDAPPAQFHGNNRLETILVVVPVIIVMLLSVLAVRSLARLNPVPQDAEKI
DVLGKQFWWNFSYPGAPAAAGGNVTNGNELVLPTGKWASLTITSGDVIHAFWAPNLGG
QRDATPGTQKTWQIQTDRAGVYQGNCNVLCGASHANMRFKVIALPPDRYNSFLTAAQA
YRAPTPAPGSAEERGYTLFTQGKPSTGALACAACHRVQGTPANGQAGPDLSFFGTRRT
LGAGMWEALTPQHWEAPQAAAELHAWIKNSPAQKPGSLMPPYDGSTYTLNGKTQKAGL
LTDEEINDIAAYLRSLRLPEEADYWRDVPVIGSNSTVAQGGNP"
misc_feature complement(415790..416503)
/locus_tag="Dgeo_0407"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 2 [Energy production and conversion]; Region:
CyoA; COG1622"
/db_xref="CDD:31809"
misc_feature complement(415886..>416107)
/locus_tag="Dgeo_0407"
/note="Cytochrome C oxidase subunit II, periplasmic
domain; Region: COX2; cl11412"
/db_xref="CDD:209309"
misc_feature complement(415442..415801)
/locus_tag="Dgeo_0407"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene complement(416869..417807)
/locus_tag="Dgeo_0408"
/db_xref="GeneID:4057144"
CDS complement(416869..417807)
/locus_tag="Dgeo_0408"
/note="converts protoheme IX and farnesyl diphosphate to
heme O"
/codon_start=1
/transl_table=11
/product="protoheme IX farnesyltransferase"
/protein_id="YP_603880.1"
/db_xref="GI:94984516"
/db_xref="InterPro:IPR000537"
/db_xref="InterPro:IPR006369"
/db_xref="GeneID:4057144"
/translation="MTVDRMTPPSGVGHTTRPLRATWRDYLALTKPKVISLLLWTTLT
AMFMAARGWPGLGLLVVVSLAGYMSAGSAGVFNMIIDRDIDLRMKRTATRPTSSGLIS
TRDAAIFGGALQVLSFGMLWVWATPLAAWMSLAGFLTYVVVYTLWLKRNTWHNIVLGG
AAGCFPPLVGWAAVTGDLNLFAWFLFAIIFFWTPVHFWALALMIKDEYREVGIPMLPV
VHGDRLTVAQIGLYAIYTVVLSVMPVFLGEVGWLYFLSALVLGWLLLQRSWVLYRHVM
AGNKVERKVAVPLYLYSMLYLALLFVAGAVDRVLLG"
misc_feature complement(416875..417759)
/locus_tag="Dgeo_0408"
/note="protoheme IX farnesyltransferase; Provisional;
Region: PRK04375"
/db_xref="CDD:179840"
gene complement(417804..418784)
/locus_tag="Dgeo_0409"
/db_xref="GeneID:4057145"
CDS complement(417804..418784)
/locus_tag="Dgeo_0409"
/note="PFAM: cytochrome oxidase assembly: (2e-06);
KEGG: dra:DR2617 cytochrome AA3-controlling protein CtaA,
, ev=1e-133, 75% identity"
/codon_start=1
/transl_table=11
/product="cytochrome oxidase assembly"
/protein_id="YP_603881.1"
/db_xref="GI:94984517"
/db_xref="InterPro:IPR003780"
/db_xref="GeneID:4057145"
/translation="MSTLTVPRSRADVWLTRLAWAALVYNVLVILWGAVVRLTGAGAG
CGAHWPLCNGVVVPQSPALHTVIEFSHRLTSGASGLLALGLIALAFRTTPKGHPARLG
AVLTFLLILAEGLVGGVQVLLGLTADSTDPARGLVQGVHLANTFLLLGALLLTALWAS
GRPVLRLRGQGRTLGLITFGLALTLLLGMAGAVTALGDLLFAPAPGTPIDTVRRDFGA
TASLIQNLRVIHPLLAILDSAYLVWLVGALRRLRPSPGVMRWGTVLLSVIGLQVLAGF
VNVALRAPAWMQLTHLLLACIMWLVMVLLSYEALTALRRVPQPARQPVAV"
misc_feature complement(<418446..418736)
/locus_tag="Dgeo_0409"
/note="Cytochrome oxidase assembly protein; Region:
COX15-CtaA; pfam02628"
/db_xref="CDD:202319"
misc_feature complement(417876..>418142)
/locus_tag="Dgeo_0409"
/note="Cytochrome oxidase assembly protein; Region:
COX15-CtaA; pfam02628"
/db_xref="CDD:202319"
gene 419061..419540
/locus_tag="Dgeo_0410"
/db_xref="GeneID:4057146"
CDS 419061..419540
/locus_tag="Dgeo_0410"
/note="PFAM: protein of unknown function DUF420:
(1.8e-77);
KEGG: dra:DR2616 hypothetical protein, ev=9e-70, 78%
identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603882.1"
/db_xref="GI:94984518"
/db_xref="InterPro:IPR007352"
/db_xref="GeneID:4057146"
/translation="MAAIINQWAVITIVLSGLTLLCGVWFIRRGNREAHMRAMLLASA
LATLFLVLYLTRLGLGYEKKYVGPAEWRGAYFFLLISHILLAALNLPLALLALWNAWR
GLKAAGNLQHIDAPAARPWFNRHRAWVRWTVPVWLYVALTGWIIYLVLGRYGQIIKG"
misc_feature 419064..419510
/locus_tag="Dgeo_0410"
/note="Protein of unknown function (DUF420); Region:
DUF420; pfam04238"
/db_xref="CDD:146725"
gene 419639..420460
/gene="panB"
/locus_tag="Dgeo_0411"
/db_xref="GeneID:4057147"
CDS 419639..420460
/gene="panB"
/locus_tag="Dgeo_0411"
/note="catalyzes the formation of tetrahydrofolate and
2-dehydropantoate from 5,10-methylenetetrahydrofolate and
3-methyl-2-oxobutanoate"
/codon_start=1
/transl_table=11
/product="3-methyl-2-oxobutanoate
hydroxymethyltransferase"
/protein_id="YP_603883.1"
/db_xref="GI:94984519"
/db_xref="InterPro:IPR003700"
/db_xref="GeneID:4057147"
/translation="MKRSVPDLMNASEPLVMVTAYDYPGARHAEAAGVDLILVGDSLG
NVVLGYDSTAPVTLDDMIHHARAVRRGAPNTFLVVDLPFGTYHTGVTDAMRNAVRVIQ
QTGADAVKLEGATPEVLDVVGVLARNGIPVMGHVGLMPQTATAQGGLKVQGRDEASAR
RTLEGALALEAAGAFSVVLEAIPARLARLITERLHVPTIGIGAGVHCRGQVLVYHDLL
GLYEGDEKKLAKRYAELGKEAREAIAAYAREVRAREFPTKDQSFVMKDDVLGKLY"
misc_feature 419651..420349
/gene="panB"
/locus_tag="Dgeo_0411"
/note="Ketopantoate hydroxymethyltransferase (KPHMT) is
the first enzyme in the pantothenate biosynthesis pathway.
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes
the first committed step in the biosynthesis of
pantothenate (vitamin B5), which is a...; Region:
KPHMT-like; cd06557"
/db_xref="CDD:119342"
misc_feature order(419651..419656,419702..419713,419720..419722,
419765..419767,419771..419788,419798..419803,
419816..419818,419825..419830,419837..419839,
419846..419848,419885..419890,419918..419920,
419930..419932,419939..419944,419957..419959,
420014..420031,420059..420064,420068..420079,
420161..420163,420281..420283,420290..420295,
420335..420337,420344..420349)
/gene="panB"
/locus_tag="Dgeo_0411"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:119342"
misc_feature order(419693..419695,419750..419752,419756..419764,
419876..419878,419966..419968,420041..420043,
420056..420058,420176..420178,420269..420271,
420275..420277)
/gene="panB"
/locus_tag="Dgeo_0411"
/note="active site"
/db_xref="CDD:119342"
misc_feature order(419759..419761,419876..419878,419966..419968)
/gene="panB"
/locus_tag="Dgeo_0411"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119342"
gene complement(420516..421976)
/locus_tag="Dgeo_0412"
/db_xref="GeneID:4057148"
CDS complement(420516..421976)
/locus_tag="Dgeo_0412"
/note="KEGG: dra:DR2594 magnesium protoporphyrin
chelatase, , ev=0.0, 87% identity"
/codon_start=1
/transl_table=11
/product="magnesium protoporphyrin chelatase"
/protein_id="YP_603884.1"
/db_xref="GI:94984520"
/db_xref="GeneID:4057148"
/translation="MTAALGQVRARTLGELLQTPDYAGRTPFDGKVRTVQDEVRDNLT
RKLRQGEALFPGVIGYDETVIPQLVNALLARQNFILLGLRGQAKSRILRAITGLLDEY
VPVIDGVDMPDDPLNPIGAEGRHLLEAHGLELPIRWLPREDRYVEKLATPDVTVADLI
GDVDPIKAARLGTSLGDTRSMHFGLLPRANRGIFAVNELADLAPKVQVALFNILQEGD
VQIKGYPIRLELDVMLVFSANPEDYTARGKIVTPLKDRIGSEIRTHYPTDVRLGMNIT
AQEAVKAPDVVVPEFIAELIEEIAFQAREDARVDKMSGVSQRLPISLMEVAAANAERR
SLVSGDAPVVRVSDVYAGLPAITGKLELEYEGELKGADNVAREVIRKAAGAVYARRYA
SFDTRELEKWFENGNVFRFPQSGDAGAALKAIRQVPGLTDLAAQVAGSSDDATRVSAA
EFVLEGLYGRKKLSRAEETYAAPEPDVRQQRGGRWN"
misc_feature complement(420552..421889)
/locus_tag="Dgeo_0412"
/note="Mg-chelatase subunit ChlI [Coenzyme metabolism];
Region: ChlI; COG1239"
/db_xref="CDD:31432"
gene complement(422044..422391)
/locus_tag="Dgeo_0413"
/db_xref="GeneID:4057149"
CDS complement(422044..422391)
/locus_tag="Dgeo_0413"
/note="KEGG: dra:DR2593 hypothetical protein, ev=1e-30,
63% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603885.1"
/db_xref="GI:94984521"
/db_xref="GeneID:4057149"
/translation="MGGTFAGFAVDGKVTPERVDVRLGGRVNGDDVHLILDGRRVTGR
FSGRLQGKDVNLRLDGEQLTGRIGGAFEGKDVQLDCGDVPPELAALAAVCAYKVLEDD
EAASASTVIHPSS"
gene 422473..424185
/gene="gatB"
/locus_tag="Dgeo_0414"
/db_xref="GeneID:4057150"
CDS 422473..424185
/gene="gatB"
/locus_tag="Dgeo_0414"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
B"
/protein_id="YP_603886.1"
/db_xref="GI:94984522"
/db_xref="InterPro:IPR003789"
/db_xref="InterPro:IPR004413"
/db_xref="InterPro:IPR006075"
/db_xref="InterPro:IPR006107"
/db_xref="GeneID:4057150"
/translation="MTVPVGVQVVALNRAADPSLQFAHVACLRLSPSQGSHPVLVQQG
VWASLEGKARAVVPKLAEGFAGEPGKSCFAAPSTLPLSPCGGLAPCARLSAILPPMYR
AVIGLEVHLQLRTRSKLFSACPADYHGAEPNTYTDPLTLGLPGTLPTLNREAVDLALM
FGLALNCDVSGFTQFHRKNYFYPDAPKNFQLSQYDRPIARNGYLDVEGGRIRIKRAHL
EDDAGKLIHPAYAPYSLLDLNRAGSPLIEMVTEADITSPEQARAFLEAVQAIAQSLGV
SDATPEEGKMRCDVNLSVHRPGQPWGTKVEVKNLNSFRSVARAIEYETARQTRVLDAG
GVITQDTLGWDEGGQKTFVMRTKEGEADYRYFPEPDLPPLEITPDWIARVRARMPELP
AQKRARYVAAGVRDGDAQTLSLNVSLSRFYDEALSTQPAPDAQKLANWLLTDVAGLLA
AREIGIAQSDLKPAHLAALVRLIDAGTISGRVAKDLLPDVMEGQDPEMLVRERGLTVV
TDTAAIDAAIDAAMQADPATVEKVRAGNAKAMNALFGPVMKATGGKAKPEVVRERLQA
KLGL"
misc_feature 422770..424176
/gene="gatB"
/locus_tag="Dgeo_0414"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit B;
Validated; Region: gatB; PRK05477"
/db_xref="CDD:180111"
misc_feature 422779..423624
/gene="gatB"
/locus_tag="Dgeo_0414"
/note="GatB/GatE catalytic domain; Region: GatB_N;
pfam02934"
/db_xref="CDD:202476"
misc_feature 423733..424176
/gene="gatB"
/locus_tag="Dgeo_0414"
/note="GatB domain; Region: GatB_Yqey; smart00845"
/db_xref="CDD:197913"
gene 424223..424864
/locus_tag="Dgeo_0415"
/db_xref="GeneID:4057151"
CDS 424223..424864
/locus_tag="Dgeo_0415"
/note="KEGG: dra:DR2554 hypothetical protein, ev=3e-44,
48% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603887.1"
/db_xref="GI:94984523"
/db_xref="GeneID:4057151"
/translation="MTSAHWRLAALLALWVQVASLFGMAAYGLWRGHFSVDGWFTGIE
AFLGGLVLAWWTVLLGRLTEGRAVPPTDGTLVSLRFAFPWLTSLRLMLWSLTLLGVLA
GLAPEANTVALTALFTIWLAAILASNAVYGTLTRLAPNPADLTGRRRLAEWLNVAAAL
SLGMTVFNLVPIAGFSTAPTLTDQLVYGLGGGLDVLATLLALAAVQAAPGAKG"
gene 424914..425876
/locus_tag="Dgeo_0416"
/db_xref="GeneID:4057152"
CDS 424914..425876
/locus_tag="Dgeo_0416"
/note="PFAM: PfkB: (2.4e-41);
KEGG: dra:DR2553 carbohydrate kinase, , ev=1e-141, 81%
identity"
/codon_start=1
/transl_table=11
/product="PfkB protein"
/protein_id="YP_603888.1"
/db_xref="GI:94984524"
/db_xref="InterPro:IPR011611"
/db_xref="GeneID:4057152"
/translation="MMERQPLVSLGDLAWDVLAKPDTMLLPGGDTTGRMELSGGGSAA
NLAVWARRSGYPATFVGKIGRDRFGELATAELQAEDVRTELIRSDAHPTGVILALIDR
RGQRAMLTGQGADWELLPEELPRDVLRGARHLHLTAWSLFRDPPRAAALEAARLAKAA
GATLSLDPGSFQMIQQLGRENFLGIVDDIPFDLMFPNADEARAMSGEDEPGRALSWLR
ARYPQALVVVKLDEDGAVLEGPAQPRIHVPATHDRLVDATGAGDAFGGAFLAEWLTHG
NAGRAARLAVQVGGWVVSRFGARPPADADLAARLVPFQTAGGGA"
misc_feature 424929..425804
/locus_tag="Dgeo_0416"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature 424932..425804
/locus_tag="Dgeo_0416"
/note="2-keto-3-deoxygluconate kinase (KdgK)
phosphorylates 2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the...;
Region: KdgK; cd01166"
/db_xref="CDD:29350"
misc_feature order(425034..425039,425046..425048,425199..425201,
425241..425243,425328..425330,425424..425426,
425688..425690,425697..425699)
/locus_tag="Dgeo_0416"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29350"
misc_feature order(425598..425600,425613..425615,425661..425663,
425688..425696,425703..425705,425769..425771,
425781..425783)
/locus_tag="Dgeo_0416"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29350"
gene 425909..426904
/locus_tag="Dgeo_0417"
/db_xref="GeneID:4057153"
CDS 425909..426904
/locus_tag="Dgeo_0417"
/note="PFAM: aminodeoxychorismate lyase: (2.9e-109);
KEGG: dra:DR2552 hypothetical protein, ev=1e-127, 69%
identity"
/codon_start=1
/transl_table=11
/product="aminodeoxychorismate lyase"
/protein_id="YP_603889.1"
/db_xref="GI:94984525"
/db_xref="InterPro:IPR003770"
/db_xref="GeneID:4057153"
/translation="MRVLLALLSLLLLAALGAFLYLRSLTQPAGGGPYTLEVKPGDTL
ARVARTLQAHGIVKNADALRFVMRQKGTAGRLKEGLYDLNGQMNVYQVADTLAGPARI
PTVNATIPEGWRLKDIPPILARAGFDAAAVKAALNDPSLSPYTAGQQKNLEGFVFPAT
YTFRVGETPRDAVQEMVDRMNEEFTPANRAKARSLGLSVREWVILASMVQAEAAGDSE
MPVIAGVFLNRLEEGIPLGSDPTVAYGLGKNLPQLDRSAGDFTRDTPYNTYTRQGLPP
TPINNPGQAALLSVLNPQRKLPDGRAALYFLHGLNGKIYVNHDYAAHLRDVARYR"
misc_feature 426008..426898
/locus_tag="Dgeo_0417"
/note="YceG-like family; Region: YceG; pfam02618"
/db_xref="CDD:202312"
misc_feature 426134..426889
/locus_tag="Dgeo_0417"
/note="proteins similar to Escherichia coli yceG; Region:
yceG_like; cd08010"
/db_xref="CDD:153433"
misc_feature order(426134..426136,426140..426157,426182..426184,
426194..426196,426218..426223,426230..426232,
426617..426619,426623..426625,426674..426676,
426686..426688,426842..426847,426866..426868,
426875..426880,426887..426889)
/locus_tag="Dgeo_0417"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153433"
gene 426958..427149
/locus_tag="Dgeo_0418"
/db_xref="GeneID:4057154"
CDS 426958..427149
/locus_tag="Dgeo_0418"
/note="KEGG: dra:DR0047 hypothetical protein, ev=4e-13,
61% identity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_603890.1"
/db_xref="GI:94984526"
/db_xref="GeneID:4057154"
/translation="MPSRVFLERRNALWVRLRSLPPGTPDFEAVLEELAALTGWSRER
VLAGLGLTPEEAPHPAGER"
gene complement(427146..427958)
/locus_tag="Dgeo_0419"
/db_xref="GeneID:4057155"
CDS complement(427146..427958)
/locus_tag="Dgeo_0419"
/note="PFAM: alpha/beta hydrolase fold: (1.1e-12);
KEGG: dra:DR2549 epoxide hydrolase-related protein,
ev=1e-92, 68% identity"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_603891.1"
/db_xref="GI:94984527"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR000379"
/db_xref="InterPro:IPR000639"
/db_xref="InterPro:IPR003089"
/db_xref="GeneID:4057155"
/translation="MPELTEHQVVVNGVRLHCVAAGPEDGPPVLLLHGFPEFWRAWER
QIGPLARAGFRVVVPDLRGYNLSEKPPGVAAYRVSTLQKDVAALIHALGYRRSHVVGH
DWGGIIAWALAIRQPEVVDRLVILNAPHPAAARRMLRLPRQWLRSWYIFFFQLPWLPE
HFLLRSGRKMLRGTNPAAYTPQDRKLYQRAWEQPGAAIAMINYYRALPRFGNVKGNEV
RVPTLVLWGERDMVLRALQTVGTTGLESGKESAEFIEPEPVWVPLPTRAEGR"
misc_feature complement(427170..427940)
/locus_tag="Dgeo_0419"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:30941"
misc_feature complement(427692..427922)
/locus_tag="Dgeo_0419"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(427961..429655)
/locus_tag="Dgeo_0420"
/db_xref="GeneID:4057156"
CDS complement(427961..429655)
/locus_tag="Dgeo_0420"
/note="KEGG: dra:DRA0270 adenine deaminase, ev=0.0, 76%
identity;
TIGRFAM: adenine deaminase: (8.3e-135);
PFAM: amidohydrolase: (2.9e-29)"
/codon_start=1
/transl_table=11
/product="adenine deaminase"
/protein_id="YP_603892.1"
/db_xref="GI:94984528"
/db_xref="InterPro:IPR006679"
/db_xref="InterPro:IPR006680"
/db_xref="InterPro:IPR011550"
/db_xref="GeneID:4057156"
/translation="MTTASAASERAVRQRLVRVARGLEAGDLLVRGAQVVQPATGEVF
GADVLVAEGRVAALVGPGLGVRAARTVEARGAYLAPGFLDAHIHIESSLLTPARFAAA
VLPRGTTAVVAEPHETVNVMGLSGLRWMLEAGKGSGLRVFGSVPSSVPASPFECGGAV
LDAAEVAEALRLPGVLGLAEMMNYPGVLNLERGAWEVLDAGYGGRIDGHAAGVAGRDL
QAYAAAGPHSDHEATTPEEARERLRAGLWLMVREGSAARNLEALLPVLRERPRRAMLV
SDDVSVDELLSLGHLDRLLRACVAGGLHPADAVALVTCNPAEYWGLHDLGLVAPGYHA
DFVLLRDLERFEVLDTFVGGVEAQAGSETPPLPGGGVNLGPSWATATFEVPASWPVMQ
VRPDQITTGVGAPGSGDARLVVADRYGRGEHAACWTSGTGLTGGALAISLLHDAHHVA
VLGGSNADVRAAGRALEAMGGGVVVVAGGEVRSNLPLPYAGLMSDLPPQEAAARLSEV
TAAARVLGCTLPYPVTTLSFLGLSVIPALKLTPRGLLDVGAWQLLPRETVRVGAEG"
misc_feature complement(427994..429592)
/locus_tag="Dgeo_0420"
/note="Adenine deaminase [Nucleotide transport and
metabolism]; Region: AdeC; COG1001"
/db_xref="CDD:31205"
misc_feature complement(<429314..429577)
/locus_tag="Dgeo_0420"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature complement(428018..429442)
/locus_tag="Dgeo_0420"
/note="Adenine deaminase (AdeC) directly deaminates
adenine to form hypoxanthine. This reaction is part of one
of the adenine salvage pathways, as well as the
degradati 