LOCUS NC_008610 1160782 bp DNA circular BCT 22-DEC-2012
DEFINITION Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),
complete genome.
ACCESSION NC_008610
VERSION NC_008610.1 GI:118602060
DBLINK Project: 58645
BioProject: PRJNA58645
KEYWORDS .
SOURCE Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
ORGANISM Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing
symbionts.
REFERENCE 1 (bases 1 to 1160782)
AUTHORS Newton,I.L., Woyke,T., Auchtung,T.A., Dilly,G.F., Dutton,R.J.,
Fisher,M.C., Fontanez,K.M., Lau,E., Stewart,F.J., Richardson,P.M.,
Barry,K.W., Saunders,E., Detter,J.C., Wu,D., Eisen,J.A. and
Cavanaugh,C.M.
CONSRTM US DOE Joint Genome Institute
TITLE The Calyptogena magnifica chemoautotrophic symbiont genome
JOURNAL Science 315 (5814), 998-1000 (2007)
PUBMED 17303757
REFERENCE 2 (bases 1 to 1160782)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1160782)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000488.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000245
Source DNA and bacteria available from Colleen M. Cavanaugh
(cavanaug@fas.harvard.edu)
Contacts: Colleen M. Cavanaugh (cavanaug@fas.harvard.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1160782
/organism="Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)"
/mol_type="genomic DNA"
/strain="Cm"
/db_xref="taxon:413404"
gene 39..1331
/locus_tag="Rmag_0001"
/db_xref="GeneID:4555497"
CDS 39..1331
/locus_tag="Rmag_0001"
/note="KEGG: cbu:CBU_0001 chromosomal replication
initiator protein DnaA;
TIGRFAM: chromosomal replication initiator protein DnaA;
PFAM: Chromosomal replication initiator, DnaA C-terminal
domain; Chromosomal replication initiator, DnaA;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiator protein DnaA"
/protein_id="YP_903276.1"
/db_xref="GI:118602061"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:4555497"
/translation="MSQTWSQCLNTLRDSIPLSQYSVWIQPLKALENNNTLSLLAPNS
QVLNYINKHLKAQIKNAVAQHNKNLKIFISIASNQNTQQHITPLFEDYTFDNLILGNA
NQMAYGATKQIAENIKTSPYNPFIIYGGSGLGKTHLMQAAGHLSKEKNQNIKVIYVPL
MDFVRNITSSLRHNTIENIKTFYQSADLLLVDDIHLIAGKEKSQEEFFHIFNFLFNGK
KQIIFTCDQSPKNIKSLENRLKTRFSQGLNLHLTPPELEMRAAILLKKSQNKRININL
TEDTALFIATHIASNVRDLEGALLKLKAFVDFSKINHDFISKEIVETALGDLIKPQIK
NIDINDIQKEVAKHYALTISDLSSKSRKQHMVLARQMAIFICHELSSLSLSKIGKHFG
NRDHSTVLHAIKKIKEKHLENIEIKNDYELIKLKLANL"
misc_feature 39..1325
/locus_tag="Rmag_0001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 48..230
/locus_tag="Rmag_0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 363..779
/locus_tag="Rmag_0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 423..446
/locus_tag="Rmag_0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(426..449,612..614,714..716)
/locus_tag="Rmag_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 600..617
/locus_tag="Rmag_0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 750..752
/locus_tag="Rmag_0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1050..1319
/locus_tag="Rmag_0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1119..1121,1143..1148,1167..1169,1185..1193,
1218..1232,1239..1241,1248..1253)
/locus_tag="Rmag_0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1543..2646
/locus_tag="Rmag_0002"
/db_xref="GeneID:4555498"
CDS 1543..2646
/locus_tag="Rmag_0002"
/EC_number="2.7.7.7"
/note="KEGG: mfa:Mfla_0002 DNA polymerase III, beta
subunit;
TIGRFAM: DNA polymerase III, beta subunit;
PFAM: DNA polymerase III, beta chain"
/codon_start=1
/transl_table=11
/product="DNA polymerase III, beta subunit"
/protein_id="YP_903277.1"
/db_xref="GI:118602062"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:4555498"
/translation="MNIQLTVKELLTPLQIVISVVEKKQKLPILSHVLIQLKDNLLTL
TTTDMEIEIRASQIIKNQEEISFTIYAKDLIDIIKKLSEDIIIEFIIESSKIYIKVNK
NSFELNTSNHQDFPSLPKIKNSDIIKIKRHVLKDLIENTSFSMGSQDIRTYLNGLYLE
IDKNSIVVVATDGHRLSIGKVKQTHNLSNKKSVILPRKAVFELTKLLNKNGYKEIDIH
LSDNYFYLISNNTTIISRLIDGNFPNYLQVLPTNFNNIIIINRLAFLNSLQQASIFVE
ERTKGVKLVFKNSKLHIFSHSERGQAKTQINIKNFDKEIEIAFNINYLISILEKLHTN
EINMIVPDGKSQSCLLSSMNDDIYQYVVMPMRI"
misc_feature 1543..2643
/locus_tag="Rmag_0002"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 1543..2640
/locus_tag="Rmag_0002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(1612..1614,1756..1758,1777..1779,2134..2136)
/locus_tag="Rmag_0002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(1759..1761,1768..1770,1846..1848,1852..1854,
2359..2361,2449..2454)
/locus_tag="Rmag_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2053..2055,2059..2070,2500..2502,2629..2640)
/locus_tag="Rmag_0002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2053..2055,2059..2064,2284..2286,2389..2391,
2428..2433,2509..2511,2629..2640)
/locus_tag="Rmag_0002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 2946..5354
/locus_tag="Rmag_0003"
/db_xref="GeneID:4555499"
CDS 2946..5354
/locus_tag="Rmag_0003"
/EC_number="5.99.1.3"
/note="KEGG: tcx:Tcr_0012 DNA gyrase, B subunit;
TIGRFAM: DNA gyrase, B subunit;
PFAM: DNA gyrase, subunit B domain protein; ATP-binding
region, ATPase domain protein domain protein; TOPRIM
domain protein; DNA topoisomerase, type IIA, subunit B,
region 2 domain protein;
SMART: DNA topoisomerase II"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_903278.1"
/db_xref="GI:118602063"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:4555499"
/translation="MSEKQSQEYQASSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMI
FEVVDNAIDEALAGFCSKINITLHEDLSISVNDNGRGIPVDIHPKEGISAAEVIMTML
HAGGKFDDNSYKISGGLHGVGISVVNALSEWVELTVYRNGKIYFQHYNIGVPNEPIKV
IGKSDKTGTTIHFKPNVDIFSITEFKYDILVNRIRELSFLNLGVHIQVKELSTGKKDF
FKYKGGIKEFVRYLNKAKNPIFNNIITINAQRDDIEINVALQWSDSYQENIYCFTNNI
PQKYGGGHLAGFRGALTRTFNNYINNSSIAKKEKISITGEDTREGLTAIISIKIPNPK
FSSQTKDKLVSSEVRAPVESALNEKLSDYLLENPIEAKIIIRKILDASHARNAARKAR
EIIRRKGMLNIADLPGKLSDCQTKDPTKSEIFLVEGDSAGGSAKQGRDRHTQAILPLK
GKILNVEKVRFEKILSSIEVGTLITALGCGIGKEEYDITKLRYHKIVIMTDADVDGAH
IRTLLLTFFYRYLPELIENGYLYIAQPPLYKIKKGKQECYLKDNQELNDYLLQEAIND
AYFFLSKETPAISGMALESLVKEYYKINTIIDKLYKRYNLALLKVIASSTPIDDLTNQ
KNMNTWCANLTEKLNKDITPAQKHIVTFNAISNEVEHTLCVYGVNTEHKTLNAAFFSS
LDYQAIKDFSKKIESMITQESYIEKKNKQVKVDRFSHVVDFLIKDAKKGQSFQRYKGL
GEMNPEQLWETTMDPEQRTLLKVKIEDSIVANEVFSTLMGDKVEPRRNFIENNALLVD
NLYF"
misc_feature 2952..5345
/locus_tag="Rmag_0003"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 3063..>3341
/locus_tag="Rmag_0003"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(3081..3083,3093..3095,3102..3104,3168..3170,
3174..3176,3180..3182,3186..3191,3306..3317)
/locus_tag="Rmag_0003"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 3093..3095
/locus_tag="Rmag_0003"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(3180..3182,3186..3188,3306..3308,3312..3314)
/locus_tag="Rmag_0003"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 3612..4088
/locus_tag="Rmag_0003"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 3765..3767
/locus_tag="Rmag_0003"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(3939..3941,3948..3953,3957..3959)
/locus_tag="Rmag_0003"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(3957..3959,3963..3965)
/locus_tag="Rmag_0003"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 4206..4550
/locus_tag="Rmag_0003"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(4224..4229,4236..4238,4446..4448,4452..4454,
4458..4460)
/locus_tag="Rmag_0003"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(4224..4226,4446..4448)
/locus_tag="Rmag_0003"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 5127..5318
/locus_tag="Rmag_0003"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 5385..6272
/locus_tag="Rmag_0004"
/db_xref="GeneID:4555500"
CDS 5385..6272
/locus_tag="Rmag_0004"
/EC_number="2.7.1.19"
/note="PFAM: phosphoribulokinase/uridine kinase;
KEGG: tbd:Tbd_2447 phosphoribulokinase"
/codon_start=1
/transl_table=11
/product="phosphoribulokinase"
/protein_id="YP_903279.1"
/db_xref="GI:118602064"
/db_xref="InterPro:IPR006082"
/db_xref="InterPro:IPR006083"
/db_xref="GeneID:4555500"
/translation="MSKKHPVIVVIGSSGAGTTFIKRAFEHIFRKESINPLILEGDSF
HKYDRTSMKENVKKQEDLGNNFFSHFGPDANLFEKIEQTFKDYGKTGKCDRRYYLHSE
EEAVEYNQRLSTYLSPGEFTPWKKVDDTTDLLFYEGLHGAVVTDDIDMAQHGDLKIGV
VPSVNLEWIQKIHRDNAERGYSEEEIVDTILRRMPDYINYITPQFSQTDINFQRVATV
DTSNPFIARDIPTPDESFVVIRFNDLNKTPVDFVYLCSMINNSFMSRRNTIVVPGGKM
SIAMEIILYPIIKKMIKNK"
misc_feature 5385..6269
/locus_tag="Rmag_0004"
/note="phosphoribulokinase; Provisional; Region: PRK15453"
/db_xref="CDD:185350"
misc_feature order(5418..5420,5433..5444)
/locus_tag="Rmag_0004"
/note="active site"
/db_xref="CDD:73295"
gene complement(6904..9354)
/gene="leuS"
/locus_tag="Rmag_0005"
/db_xref="GeneID:4555501"
CDS complement(6904..9354)
/gene="leuS"
/locus_tag="Rmag_0005"
/EC_number="6.1.1.4"
/note="leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA
synthetase; charges leucine by linking carboxyl group to
alpha-phosphate of ATP and then transfers
aminoacyl-adenylate to its tRNA; due to the large number
of codons that tRNA(Leu) recognizes, the leucyl-tRNA
synthetase does not recognize the anticodon loop of the
tRNA, but instead recognition is dependent on a conserved
discriminator base A37 and a long arm; an editing domain
hydrolyzes misformed products; in Methanothermobacter
thermautotrophicus this enzyme associates with prolyl-tRNA
synthetase"
/codon_start=1
/transl_table=11
/product="leucyl-tRNA synthetase"
/protein_id="YP_903280.1"
/db_xref="GI:118602065"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002300"
/db_xref="InterPro:IPR002302"
/db_xref="InterPro:IPR013155"
/db_xref="GeneID:4555501"
/translation="MNSEYNAQKIEAQAQKYWQENKSFEVSEDTSKEKYYCLSMFPYP
SGSLHMGHVRNYSIGDVISRYQKMQGKNVMQPIGWDGFGLPAENAALENKVSPAKWTY
ENIDYMRDQLSKLGFGYDWSREIATCHQKYYRWEQWLFIKLFEKDLVYKKNAIVNWDP
VDQTVLANEQVIDGRGWRSNALIEKKKISQWFMRITNYADELIYGLDKLDGWPDAVKT
MQKNWIGKSVGLEVDFPRHNADSIKVYTTRPDTLMGVTYLVISSEHPIALEAGKNNPQ
VQAFIDECKTIQITKETMKTIDKKGIDLGVKCIHPITSDDVPIWIANFVLIGYGTGAV
MSVPAHDKRDYEFAKKYGIAIKKVINENISIDKNAMTDKGVLFNSGEFNGLNFDQAFN
EIAKTLTDKNLGRKKTNYRLQDWGISRQRYWGCPIPIINCQNCGIVVVPEADLPVVLP
EVMSFDSVGSLIKKMPEFYQTTCPKCGKMAQQETDTLDTFFESSWYFARYTCKDNNDK
MLDKRANYWLANGGVDQYIGGIEHAILHLLYARFFNKLLRDEGFIKNDEPFKNLLTQG
MVLKDGAKMSKSKGNTVDPAQMIEKYGADTVRLFILFAAPPTQNLEWSDSGLEGVHRF
INKVYRLIMDFIQDHKSHAIGTLNNFDKAQKDIRLKTHQTLSKITDNMSRRYLFNTVI
AALMKLCNTLSKFNDTSKTSMAIRQESIHILLKTLSPIAPHLCHYLWKKLGNIKAIIN
EPWPNVDKSALVQDKMQIIVQVNGKLRTKLMFSTDVDNAQIEAQTLANENITKFTKGK
IIVKVIIVPNKLVNIVVK"
misc_feature complement(6985..9354)
/gene="leuS"
/locus_tag="Rmag_0005"
/note="leucyl-tRNA synthetase; Validated; Region: leuS;
PRK00390"
/db_xref="CDD:178996"
misc_feature complement(<8680..9255)
/gene="leuS"
/locus_tag="Rmag_0005"
/note="catalytic core domain of leucyl-tRNA synthetases;
Region: LeuRS_core; cd00812"
/db_xref="CDD:173906"
misc_feature complement(9199..9210)
/gene="leuS"
/locus_tag="Rmag_0005"
/note="HIGH motif; other site"
/db_xref="CDD:173906"
misc_feature complement(8158..8670)
/gene="leuS"
/locus_tag="Rmag_0005"
/note="Leucyl-tRNA synthetase, Domain 2; Region:
tRNA-synt_1_2; pfam13603"
/db_xref="CDD:205781"
misc_feature complement(7516..>8109)
/gene="leuS"
/locus_tag="Rmag_0005"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature complement(7618..7629)
/gene="leuS"
/locus_tag="Rmag_0005"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(7618..7629)
/gene="leuS"
/locus_tag="Rmag_0005"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
misc_feature complement(7159..7518)
/gene="leuS"
/locus_tag="Rmag_0005"
/note="Anticodon-binding domain of bacterial and
eukaryotic mitochondrial leucyl tRNA synthetases; Region:
Anticodon_Ia_Leu_BEm; cd07958"
/db_xref="CDD:153412"
misc_feature complement(order(7264..7266,7276..7278,7285..7287,
7294..7299,7306..7308,7318..7320,7474..7476,7486..7488,
7495..7500,7507..7509))
/gene="leuS"
/locus_tag="Rmag_0005"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153412"
gene complement(9387..10325)
/locus_tag="Rmag_0006"
/db_xref="GeneID:4555333"
CDS complement(9387..10325)
/locus_tag="Rmag_0006"
/EC_number="1.3.3.1"
/note="TIGRFAM: dihydroorotate dehydrogenase family
protein;
PFAM: dihydroorotate dehydrogenase;
KEGG: noc:Noc_2822 dihydroorotate dehydrogenase 1"
/codon_start=1
/transl_table=11
/product="dihydroorotate oxidase B, catalytic subunit"
/protein_id="YP_903281.1"
/db_xref="GI:118602066"
/db_xref="InterPro:IPR001295"
/db_xref="InterPro:IPR003009"
/db_xref="InterPro:IPR005720"
/db_xref="GeneID:4555333"
/translation="MLNNLKTLFCGLSLNSPIVLLSGCVGFGEEYTRIDGFSNTDVGA
ICLKSTTLEPRLGNIPHRVCETPSGMINAIGLQNPGTDVVINDIIPNLDKTETHFIIN
ISGSSIEEYGEITKRFDNTNIDAIEINISCPNVREGGVTFGNDPDISYRVVDICRKNT
SKPIITKLSPNQTDIALNAQRCIDAGTDALAVINTLMGMSIDTKTKKPIIGNNQGGLS
GPAIKPIALLKVHQVYQVSKHYNVPIIGQGGITTANDAIEFIIAGAATIGIGTALFYD
PLVCHKINDGISEYLNENNLNNIGDLVGILELNSSI"
sig_peptide complement(10239..10325)
/locus_tag="Rmag_0006"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.613) with cleavage site probability 0.560 at
residue 29"
misc_feature complement(9411..10313)
/locus_tag="Rmag_0006"
/note="dihydroorotate dehydrogenase (subfamily 1) family
protein; Region: pyrD_sub1_fam; TIGR01037"
/db_xref="CDD:130109"
misc_feature complement(9408..10310)
/locus_tag="Rmag_0006"
/note="Dihydroorotate dehydrogenase (DHOD) class 1B
FMN-binding domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step and
the only redox reaction in the de novo biosynthesis of
UMP, the precursor of all pyrimidine...; Region:
DHOD_1B_like; cd04740"
/db_xref="CDD:73402"
misc_feature complement(order(9492..9497,9501..9503,9666..9668,
10095..10097,10131..10133,10137..10142,10158..10160,
10182..10184,10224..10226,10233..10238))
/locus_tag="Rmag_0006"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73402"
misc_feature complement(order(9513..9518,9579..9581,9669..9671,
9741..9749,9825..9827,9930..9932,9939..9941,10110..10112,
10179..10181))
/locus_tag="Rmag_0006"
/note="active site"
/db_xref="CDD:73402"
misc_feature complement(order(9513..9518,9579..9581,9669..9671,
9744..9749,9825..9827,9939..9941,10110..10112,
10179..10181))
/locus_tag="Rmag_0006"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73402"
misc_feature complement(order(9411..9413,9420..9422,9540..9545,
9552..9554,9642..9647,9651..9659,9666..9668,9702..9710,
9717..9737,9810..9812,9894..9896,10122..10130))
/locus_tag="Rmag_0006"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73402"
misc_feature complement(order(9741..9746,9933..9935,9939..9941,
10110..10112))
/locus_tag="Rmag_0006"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73402"
gene 10365..11006
/locus_tag="Rmag_0007"
/db_xref="GeneID:4555334"
CDS 10365..11006
/locus_tag="Rmag_0007"
/EC_number="6.3.3.3"
/note="TIGRFAM: dethiobiotin synthase;
KEGG: tcx:Tcr_0261 dethiobiotin synthase"
/codon_start=1
/transl_table=11
/product="dethiobiotin synthase"
/protein_id="YP_903282.1"
/db_xref="GI:118602067"
/db_xref="InterPro:IPR004472"
/db_xref="GeneID:4555334"
/translation="MKGLFISGSGTNVGKTFVAQYLIRLLSNTLKVSARKPVESDCEN
KNGRLIPKDALLLSKACNINEPIDKVCRYKLESCSSAQMASQDSGLKLTLDDLVDACM
SDEFVIVEGTGGLLSPIARQALNSDLIQALDMPVVLVIKDELGAVNQALLSINSAQSC
GLSISMLVLNQIQPNFLKNAQAIKQHTDIDINVFNQNHLASFERKVKKILLVI"
misc_feature 10368..10937
/locus_tag="Rmag_0007"
/note="AAA domain; Region: AAA_26; pfam13500"
/db_xref="CDD:205678"
misc_feature 10371..10931
/locus_tag="Rmag_0007"
/note="dithiobiotin synthetase; Reviewed; Region: bioD;
PRK00090"
/db_xref="CDD:178855"
gene complement(11289..11918)
/locus_tag="Rmag_0008"
/db_xref="GeneID:4555335"
CDS complement(11289..11918)
/locus_tag="Rmag_0008"
/note="PFAM: Glutathione S-transferase, N-terminal domain;
KEGG: hch:HCH_05897 glutathione S-transferase"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase domain-containing
protein"
/protein_id="YP_903283.1"
/db_xref="GI:118602068"
/db_xref="InterPro:IPR004045"
/db_xref="GeneID:4555335"
/translation="MLTKPNPSSTTLYSSPQDIQSHAVRFIMAEKNIERGVLNLKLEE
IPEEILELNPYQSLPTLFDRGIVLYDLSVVMEYLDERFPFPPLLPVDPIEKSEKRLLI
FRFTRAPGCLFELVNNIELGIKKDANKARKILKNNLIELVPLFAYKAFFKSDNMTIVD
ACLGALLWRLKKLDIVLGTPGKAVTNYANRLFSRESFKISLTDCEREYN"
misc_feature complement(11298..11897)
/locus_tag="Rmag_0008"
/note="stringent starvation protein A; Provisional;
Region: sspA; PRK09481"
/db_xref="CDD:181895"
misc_feature complement(11673..11888)
/locus_tag="Rmag_0008"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
misc_feature complement(11316..11645)
/locus_tag="Rmag_0008"
/note="C-terminal, alpha helical domain of the Glutathione
S-transferase family; Region: GST_C_family; cl02776"
/db_xref="CDD:207726"
misc_feature complement(order(11412..11414,11424..11426,11433..11438,
11445..11447,11601..11603,11622..11624))
/locus_tag="Rmag_0008"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198286"
misc_feature complement(order(11499..11501,11598..11600,11607..11612,
11619..11624))
/locus_tag="Rmag_0008"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198286"
misc_feature complement(order(11412..11414,11421..11423,11577..11582,
11601..11603))
/locus_tag="Rmag_0008"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198286"
gene complement(11997..12860)
/locus_tag="Rmag_0009"
/db_xref="GeneID:4555336"
CDS complement(11997..12860)
/locus_tag="Rmag_0009"
/note="KEGG: lpf:lpl2631 ubiquinol-cytochrome c reductase
cytochrome c1 subunit"
/codon_start=1
/transl_table=11
/product="ubiquinol-cytochrome c reductase cytochrome c1
subunit"
/protein_id="YP_903284.1"
/db_xref="GI:118602069"
/db_xref="InterPro:IPR002326"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4555336"
/translation="MKKQLHVILIISIITFYFNVLASTEVHLDHANTDINDKKSLQRG
VKLFMNYCSGCHSIQFMRYNRIGKDLFLDDVIAAYEKAKIAVLNNQSLKHDDFVALSR
ALDSEITSPDQAKSFLKKISKEEIEENLMKATDKEVEKNLIFTNEKVGSLITSAMSIS
NAKQWFGSNPDLSLVSRSKDVDWIYSYLRGFYKDDSRVFGVNNHILENASMPDVLWQL
KQNKSSKEFEQDIRDISNFLDYVGEPAKLVRFDLGIKVLGFLFILFIFSYLMKKEYWK
DIKYGKWRTKN"
sig_peptide complement(12792..12860)
/locus_tag="Rmag_0009"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.983) with cleavage site probability 0.981 at
residue 23"
misc_feature complement(12027..12779)
/locus_tag="Rmag_0009"
/note="Cytochrome C1 family; Region: Cytochrom_C1;
pfam02167"
/db_xref="CDD:190231"
gene complement(12864..14087)
/locus_tag="Rmag_0010"
/db_xref="GeneID:4555337"
CDS complement(12864..14087)
/locus_tag="Rmag_0010"
/note="PFAM: Cytochrome b/b6, N-terminal domain;
Cytochrome b/b6, C-terminal domain;
KEGG: tbd:Tbd_1832 cytochrome b subunit of cytochrome bc1"
/codon_start=1
/transl_table=11
/product="cytochrome b/b6 domain-containing protein"
/protein_id="YP_903285.1"
/db_xref="GI:118602070"
/db_xref="InterPro:IPR005797"
/db_xref="InterPro:IPR005798"
/db_xref="GeneID:4555337"
/translation="MNNNKNWINQRFPLTKVWNEHLAEYYTPRNFNFWYFFGSLAMLV
LVMQIVTGIFLTMHFKPDAIHAFASVEYIMRDVNWGWLIRYLHSTGASAFFIVIYLHM
YRGLLYGSYKAPRELIWILGMVLYIALMAEAFMGYVLPWGQMSYWGAQVIISLFGSVP
VFGPDILTFILGDYAVGDPVLNRFFSLHVITLPLILVILVFLHIVALHTVGSNNPDGI
EIKKNKNKDGIPKDGIPFHPYYSVKDIVGVIVFLMIFSAVVFFAPAMNGYFLENANFV
EANPLKTPSHIAPLWYLTPFYSVLRAIPPMFSSQFPGVVGMFSALLILIALPWLDKSS
VKSIRYRSWPYKVALGIFVISFVILGYLGMQPVTPINALLARIFTVTYFGFFILMPWF
TSIGKTKIVPTRVTE"
misc_feature complement(12918..14051)
/locus_tag="Rmag_0010"
/note="cytochrome b; Provisional; Region: CYTB; MTH00145"
/db_xref="CDD:177203"
misc_feature complement(13530..14051)
/locus_tag="Rmag_0010"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cd00284"
/db_xref="CDD:29347"
misc_feature complement(order(13962..13964,13971..13973,14022..14027))
/locus_tag="Rmag_0010"
/note="Qi binding site; other site"
/db_xref="CDD:29347"
misc_feature complement(order(13608..13610,13632..13637,13647..13667,
13677..13679,13707..13712,13719..13721,13728..13733,
13740..13745,13755..13772,13791..13793,13800..13805,
13809..13814,13818..13823,13830..13835,13842..13844,
13887..13889,13959..13961,13968..13973,13980..13985,
14001..14009,14019..14024))
/locus_tag="Rmag_0010"
/note="intrachain domain interface; other site"
/db_xref="CDD:29347"
misc_feature complement(order(13746..13748,13830..13832,13839..13847,
13851..13865,13872..13877,13884..13889,13914..13919,
13926..13928,13938..13940,14001..14003,14010..14012,
14016..14021))
/locus_tag="Rmag_0010"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29347"
misc_feature complement(order(13710..13715,13719..13724,13731..13736,
13776..13778,13782..13787,13794..13796,13806..13808,
13962..13967,13971..13976,13983..13985))
/locus_tag="Rmag_0010"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature complement(order(13668..13673,13677..13682,13689..13694,
13815..13817,13824..13829,13836..13838,13878..13880,
13911..13913,13920..13925,13929..13934,13941..13946,
13953..13955))
/locus_tag="Rmag_0010"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature complement(order(13536..13538,13620..13622,13632..13637,
13644..13646,13683..13688,13695..13700,13707..13709))
/locus_tag="Rmag_0010"
/note="Qo binding site; other site"
/db_xref="CDD:29347"
misc_feature complement(12954..13397)
/locus_tag="Rmag_0010"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cd00290"
/db_xref="CDD:29371"
misc_feature complement(order(13068..13073,13083..13088,13260..13265,
13272..13274,13299..13301,13305..13310,13317..13322,
13329..13331,13338..13343,13350..13352,13359..13364,
13368..13376,13383..13397))
/locus_tag="Rmag_0010"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29371"
misc_feature complement(order(13095..13097,13101..13109,13113..13118,
13125..13127,13155..13157,13212..13223,13227..13229,
13236..13244,13248..13262,13266..13271,13275..13277,
13299..13301,13308..13316,13320..13325,13335..13337,
13344..13349,13356..13361,13368..13370,13380..13382,
13386..13394))
/locus_tag="Rmag_0010"
/note="intrachain domain interface; other site"
/db_xref="CDD:29371"
misc_feature complement(order(13356..13358,13380..13382))
/locus_tag="Rmag_0010"
/note="Qi binding site; other site"
/db_xref="CDD:29371"
misc_feature complement(order(13137..13139,13197..13202,13209..13211,
13218..13223,13227..13229))
/locus_tag="Rmag_0010"
/note="Qo binding site; other site"
/db_xref="CDD:29371"
gene complement(14101..14697)
/locus_tag="Rmag_0011"
/db_xref="GeneID:4555338"
CDS complement(14101..14697)
/locus_tag="Rmag_0011"
/EC_number="1.10.2.2"
/note="KEGG: noc:Noc_0299 ubiquinol-cytochrome c
reductase, iron-sulfur subunit;
TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur
subunit;
PFAM: Rieske [2Fe-2S] domain protein"
/codon_start=1
/transl_table=11
/product="ubiquinol-cytochrome c reductase, iron-sulfur
subunit"
/protein_id="YP_903286.1"
/db_xref="GI:118602071"
/db_xref="InterPro:IPR005805"
/db_xref="InterPro:IPR005806"
/db_xref="InterPro:IPR006317"
/db_xref="GeneID:4555338"
/translation="MSKQEIDLKKRRFLTGATSVIGAVGVGFVLVPFLSSWMPSAREK
AAGAPVDVDISKLDNGQLVRVLWRKKPVWIFKRDKTTIENLSTLNSILTDPDSNKLSQ
QPEYAKNIYRSINPNIAVIVGVCTHLGCSPTYRPKLGSADLGGDTWKGGFYCPCHGSK
FDLAGRVYAGVPAPTNLVIPPYYFVADSLIRIGINPKA"
misc_feature complement(14578..14697)
/locus_tag="Rmag_0011"
/note="Ubiquitinol-cytochrome C reductase Fe-S subunit TAT
signal; Region: UCR_Fe-S_N; pfam10399"
/db_xref="CDD:150981"
misc_feature complement(14119..14673)
/locus_tag="Rmag_0011"
/note="ubiquinol-cytochrome c reductase, iron-sulfur
subunit; Region: Rieske_proteo; TIGR01416"
/db_xref="CDD:188138"
misc_feature complement(14119..14553)
/locus_tag="Rmag_0011"
/note="Iron-sulfur protein (ISP) component of the bc(1)
complex family, Rieske domain; The Rieske domain is a
[2Fe-2S] cluster binding domain involved in electron
transfer. The bc(1) complex is a multisubunit enzyme found
in many different organisms including...; Region:
Rieske_cytochrome_bc1; cd03470"
/db_xref="CDD:58540"
misc_feature complement(order(14221..14223,14227..14229,14236..14238,
14314..14319,14323..14325))
/locus_tag="Rmag_0011"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58540"
gene complement(14802..15107)
/locus_tag="Rmag_0012"
/db_xref="GeneID:4555339"
CDS complement(14802..15107)
/locus_tag="Rmag_0012"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903287.1"
/db_xref="GI:118602072"
/db_xref="GeneID:4555339"
/translation="MCQYKALTNLASFMPSGQLGQLFAQAKTYNQINIELAKLLQDTL
KPLELCLIRDNTATLITHNQAIAFRAQKQLVTLLELLIQIPALVSITHVEIKININK"
sig_peptide complement(15033..15107)
/locus_tag="Rmag_0012"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.630) with cleavage site probability 0.395 at
residue 25"
gene 15160..17838
/locus_tag="Rmag_0013"
/db_xref="GeneID:4555340"
CDS 15160..17838
/locus_tag="Rmag_0013"
/note="TIGRFAM: preprotein translocase, SecA subunit;
PFAM: helicase domain protein; SEC-C motif domain protein;
SecA DEAD domain protein; SecA Wing and Scaffold; SecA
preprotein cross-linking region;
KEGG: vfi:VF2193 protein translocase subunit SecA"
/codon_start=1
/transl_table=11
/product="protein translocase subunit secA"
/protein_id="YP_903288.1"
/db_xref="GI:118602073"
/db_xref="InterPro:IPR000185"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR004027"
/db_xref="InterPro:IPR011115"
/db_xref="InterPro:IPR011116"
/db_xref="InterPro:IPR011130"
/db_xref="GeneID:4555340"
/translation="MSILNKVLSKIIGSRNDRFIKVLYKTVDKITELESKMQALSDEQ
LKSKTQEFKDRINNKETLDSILVEAFAVIRETSTRVLDLRHHDVQLIGGMVLNDGNIA
EMGTGEGKTLVATLPAYLNALSGKGVHIVTVNDYLATRDAQWMGKVFDFLGMSVGVIV
SNMAHEDKQSAYLCDIAYATNNELGFDYLRDNMAFTSEQKVQRILNFAIVDEVDSILI
DEARTPLIISGPVDDYAQIYQTINHMIPNFTKQIENGEGKEIVIEVAGDYTVDEKHKQ
VFLTDDGHGKAEHLLIDAEALPEGVSLYDASNILLMQHINSALRAHILFQKDVDYIVQ
DDEVVIVDEFTGRTMPGRRWSEGLHQAIEAKEGVSIKKENQTLASITFQNYFRLYTTL
SGMTGTADTEAVEFQDIYGLETLVVPPNKPSARADKSDKIYLTTQEKFEAIAFDVANC
QQIGQPVLVGTSSIENSELISTLLEKNNIKHEVLNAKQHEREAIIIANAGSIGAVTIA
TNMAGRGTDIVLGGKLSEEATDKQKVDWKIQHDDVIKAGGLHIVGTERNESRRVDNQL
RGRAARQGDVGSTRFYLSLEDNLMRIFASKKMASMMQKLGMEKGEAIEHKMVNRAIEN
AQRKVEGMNYDARKHLLEYDDVASDQRKVIYQLRDDLMSVSDVQDRFISIRVKVIEQF
FADYISAELMEEDWDVEGLHNALKLDYSADFPLKQWLDEGIDIDELQLRIIQGLSTIC
DHKEKIVGTKPMREFEKSVMLQTLDHYWKEHLAAMDYLRKSVNLRGYVQKNPTQEYKH
ESFAMFTSMLDTINIEIVKSLSSVTINENTNVSDVEQENNEGVQVQHEEVETLGVNDA
ELEIAKQNKFQKRKKKVGRNDPCSCGSGKKYKKCHG"
misc_feature 15175..17631
/locus_tag="Rmag_0013"
/note="preprotein translocase subunit SecA; Reviewed;
Region: PRK12904"
/db_xref="CDD:183826"
misc_feature 15460..>15810
/locus_tag="Rmag_0013"
/note="DEAD/DEAH box helicase; Region: DEAD; pfam00270"
/db_xref="CDD:201124"
misc_feature 15847..16248
/locus_tag="Rmag_0013"
/note="SecA preprotein cross-linking domain; Region:
SecA_PP_bind; smart00958"
/db_xref="CDD:198026"
misc_feature 16450..16905
/locus_tag="Rmag_0013"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature order(16543..16554,16612..16617,16684..16692)
/locus_tag="Rmag_0013"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(16708..16710,16852..16854,16864..16866,16873..16875)
/locus_tag="Rmag_0013"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 17831..18889
/gene="anmK"
/locus_tag="Rmag_0014"
/gene_synonym="ydhH"
/db_xref="GeneID:4555341"
CDS 17831..18889
/gene="anmK"
/locus_tag="Rmag_0014"
/gene_synonym="ydhH"
/note="catalyzes hydrolysis of 1,6-anhydro bond of
anyhydro-N-acetylmuramic acid (anhMurNAc) and
phosphorylates anhMurNAc to produce
N-acetyl-muramate-6-phosphate; involved in murein
recycling"
/codon_start=1
/transl_table=11
/product="anhydro-N-acetylmuramic acid kinase"
/protein_id="YP_903289.1"
/db_xref="GI:118602074"
/db_xref="InterPro:IPR005338"
/db_xref="GeneID:4555341"
/translation="MANYIGLMSGTSLDGVDGVIINGMGRKVLTQAYLPYSDKLKKSL
LELTQNSKTLLENLANIDIQVANCFSDTVYLLLQQAGLKVKNIKAIGSHGQSIFHKGG
KYSMQIGHGALIAEQTSITTVADFRMQDVAAGGQGAPLTPLYHQHILNGKDGVIINLG
GIANITHSFNGGVVGFDTGPANTLLDNWIKKNKGLDYDQDGVWSRSGLVNESLLNSML
ADDYFYQGYPKSTGPEYFNLDWLSQHLNGTEQPEDVQRTLIELSVMSISANIPLGADT
YLCGGGVHNLFLFERLVYQNPDSKVTLTNDLGVFVDYVEAAAFGFFAQRTLAGLPSNL
PSVTGAKSERVLGAIYAI"
misc_feature 17831..18880
/gene="anmK"
/locus_tag="Rmag_0014"
/gene_synonym="ydhH"
/note="anhydro-N-acetylmuramic acid kinase; Reviewed;
Region: anmK; PRK09585"
/db_xref="CDD:181970"
gene 18879..19913
/locus_tag="Rmag_0015"
/db_xref="GeneID:4555342"
CDS 18879..19913
/locus_tag="Rmag_0015"
/EC_number="3.5.2.3"
/note="catalyzes the formation of N-carbamoyl-L-aspartate
from (S)-dihydroorotate in pyrimidine biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydroorotase"
/protein_id="YP_903290.1"
/db_xref="GI:118602075"
/db_xref="InterPro:IPR002195"
/db_xref="InterPro:IPR004721"
/db_xref="InterPro:IPR006680"
/db_xref="GeneID:4555342"
/translation="MQFKMIQPDDWHLHVRSGAALKSIIGMTAAQMGRAIIMPNLNPP
VTNALQACTYKEEILSALPKGSKFNPLMVLYLTDNTTPKDIQEAIDNSVVAAKLYPAG
VTTNSDSGVTNIAKLYPTLESMQKLDIPLLVHGEVTRAEVDIFDCEAVFIDEVLNQVV
SDFPELKIVFEHITTKDAVDFVLASHHKIAATITPHHLLLNRNDMLMGGIKPHYFCLP
VLKRKNPHQLALLDVVTSGNSKFFLGTDSAPHTKANKESACGCAGIFTAHCAIELYAM
VFECQNSIDKLEGFASKFGADFYNLPYNIQTITLKKQDWTVPESYPFAYSDIVPFMAT
KTLSWKLIGS"
misc_feature 18885..19895
/locus_tag="Rmag_0015"
/note="Dihydroorotase (DHOase) catalyzes the reversible
interconversion of carbamoyl aspartate to dihydroorotate,
a key reaction in the pyrimidine biosynthesis. In contrast
to the large polyfunctional CAD proteins of higher
organisms, this group of DHOases is...; Region: DHOase;
cd01294"
/db_xref="CDD:73253"
misc_feature order(18912..18914,18918..18920,19167..19169,19278..19280,
19392..19394,19614..19616)
/locus_tag="Rmag_0015"
/note="active site"
/db_xref="CDD:73253"
misc_feature order(18924..18926,19524..19529,19620..19622,19626..19628,
19662..19667)
/locus_tag="Rmag_0015"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:73253"
misc_feature order(19308..19319,19482..19487,19521..19523,19542..19544,
19650..19658)
/locus_tag="Rmag_0015"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73253"
gene complement(20251..21153)
/locus_tag="Rmag_0016"
/db_xref="GeneID:4555343"
CDS complement(20251..21153)
/locus_tag="Rmag_0016"
/EC_number="2.7.7.2"
/EC_number="2.7.1.26"
/note="TIGRFAM: riboflavin biosynthesis protein RibF;
PFAM: Riboflavin kinase / FAD synthetase;
KEGG: son:SO3533 riboflavin biosynthesis protein RibF"
/codon_start=1
/transl_table=11
/product="FMN adenylyltransferase / riboflavin kinase"
/protein_id="YP_903291.1"
/db_xref="GI:118602076"
/db_xref="InterPro:IPR002606"
/db_xref="GeneID:4555343"
/translation="MKLIRGLQNLKSHFGSVVTIGNFDGVHIGHQKIIKTLVKKAQIM
NLPSVLISFSPTPQHFFGHMQATLSSFKQKHALLTNLGLEEYLLINFNTPFSQLSADA
FIQQILLKKLNIKHCIVGDDFRFGANRTGDFSLLQTFDFEVEKTPTVLHNFHRVSSSK
IRQSLKKGDFNLANQLLGREFSISGKIIHGQKQGRAIDFPTINILIKRKISPLLGVFA
VNVELNGKIYNGVCNLGKRPTIGGEIILLEAFLFDFNSQIYGENAKTVFKYKIRDEQK
FDSFSALKRQIKSDVKDAKNFFGL"
misc_feature complement(20254..21150)
/locus_tag="Rmag_0016"
/note="bifunctional riboflavin kinase/FMN
adenylyltransferase; Reviewed; Region: PRK05627"
/db_xref="CDD:180171"
misc_feature complement(20584..21108)
/locus_tag="Rmag_0016"
/note="FAD synthetase, N-terminal domain of the
bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
/db_xref="CDD:185679"
misc_feature complement(order(20680..20688,20710..20712,20788..20790,
21064..21066,21073..21075,21082..21093))
/locus_tag="Rmag_0016"
/note="active site"
/db_xref="CDD:185679"
misc_feature complement(20260..20628)
/locus_tag="Rmag_0016"
/note="Riboflavin kinase; Region: Flavokinase; smart00904"
/db_xref="CDD:197972"
gene complement(21165..22172)
/locus_tag="Rmag_0017"
/pseudo
/db_xref="GeneID:4555461"
gene complement(22172..23227)
/locus_tag="Rmag_0018"
/db_xref="GeneID:4555344"
CDS complement(22172..23227)
/locus_tag="Rmag_0018"
/EC_number="2.3.1.46"
/note="catalyzes the formation of O-succinyl-L-homoserine
from succinyl-CoA and L-homoserine in methionine
biosynthesis"
/codon_start=1
/transl_table=11
/product="homoserine O-succinyltransferase"
/protein_id="YP_903292.1"
/db_xref="GI:118602077"
/db_xref="InterPro:IPR005697"
/db_xref="GeneID:4555344"
/translation="MPLIAHSNLPAFSRLKDEGETILSKDRANNQVIRELHIGLLNMM
PDAALETTERQFFRLVGHSNQIAQFYLHPFTLLSIKHGKTTSKHVKQHYQTFVDIKTQ
GLDALIITGAHIEQEDLQKAPFYEELKEVVDWSYNHVTSTLCSCLATHAVLEFRYGQK
RQAIGEKCWGVFPHQVLDRQHPLMNGVNTRFDVPHSRFNEISKTQFDTTGVKILVESK
IGVHLGVSEDLLRIVFFQGHPEYDTISLLKEYKRDIIAFLKKTRDDYPPFPEHYLTEQ
SKAILNEYKTKLLSSEFSITDFPEQLISKTLNNTWSNATNVIINNWIGCVYQVTHEDI
DKPFMDGINPHDPLNLK"
misc_feature complement(22223..23227)
/locus_tag="Rmag_0018"
/note="homoserine O-succinyltransferase; Provisional;
Region: PRK05368"
/db_xref="CDD:180042"
misc_feature complement(22580..23116)
/locus_tag="Rmag_0018"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain; Region: GAT_1; cl00020"
/db_xref="CDD:206787"
misc_feature complement(22790..22792)
/locus_tag="Rmag_0018"
/note="conserved cys residue [active]"
/db_xref="CDD:153222"
gene complement(23227..24063)
/locus_tag="Rmag_0019"
/db_xref="GeneID:4555345"
CDS complement(23227..24063)
/locus_tag="Rmag_0019"
/note="KEGG: noc:Noc_2702 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903293.1"
/db_xref="GI:118602078"
/db_xref="GeneID:4555345"
/translation="MKLSAIKFKNSSHKCLTLLGMSGVGKTHLAKLLSYQDKYFHYSG
DYRIGAEYLNDKILDNIKNYIRQDKWLKDLLDNESISIQNHITFDNLSSVSAFLGKAG
NPELGGTPIGTFIARQTMHLNAETKAMLDVPQFIQKAKTQGFNHFINDAGGSLCELDN
EQVYQTLANNTVILYIRASKTNETALVECAQTHPKPLYYQANFLKQQLSIYLQKNQLI
YVAQIDPNEFVRWVFPRLLEHRKPKYEAIAKKYGYTIDSEGLYRCKNADEVFELIYGA
MN"
sig_peptide complement(23974..24063)
/locus_tag="Rmag_0019"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.664) with cleavage site probability 0.632 at
residue 30"
misc_feature complement(<23830..24006)
/locus_tag="Rmag_0019"
/note="AAA domain; Region: AAA_17; pfam13207"
/db_xref="CDD:205388"
gene complement(24091..25278)
/locus_tag="Rmag_0020"
/db_xref="GeneID:4555346"
CDS complement(24091..25278)
/locus_tag="Rmag_0020"
/EC_number="2.6.1.-"
/note="PFAM: aminotransferase, class I and II;
KEGG: hch:HCH_01778 aspartate/tyrosine/aromatic
aminotransferase"
/codon_start=1
/transl_table=11
/product="aminotransferase"
/protein_id="YP_903294.1"
/db_xref="GI:118602079"
/db_xref="InterPro:IPR004838"
/db_xref="InterPro:IPR004839"
/db_xref="GeneID:4555346"
/translation="MNDDFPRIKRLPSYVFAVTNELKTKARARGEDIIDFGMGNPDQP
TPDHIVEKLVEAARRKDTHRYSTSRGIPRLRKAIANWYKRRFDVDIDPETEAIVTIGS
KEGLSNLAQAVVGSGDTVLVPNPAYPIHPYGFVIAGADIQHVPCGPDDDFLTELERSI
KNTWPKPKIMVLNYPSNPTTQCAELDFLKKVIKIAKEHKIWVVQDLAYADIVFDDYIA
PSILQVEGAKKIAVEFFSLSKSYNMPGWRVGFMVGNLTLVDALAKIKSYLDYGMFTPI
QIAAIEALEGDQSCVKEISNMYQDRRDVLCGGLRSVGWVVTPPKATMFVWAKIPEFYQ
YMGSLEFTKKLLKIAKVGVSPGIGFGSYGDQYVRFGLIENEHRTRQAIRGIREMFRQD
GLL"
misc_feature complement(24094..25272)
/locus_tag="Rmag_0020"
/note="aminotransferase; Validated; Region: PRK08175"
/db_xref="CDD:181268"
misc_feature complement(24118..25179)
/locus_tag="Rmag_0020"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(24538..24540,24562..24567,24571..24573,
24655..24657,24748..24750,24898..24900,24970..24978))
/locus_tag="Rmag_0020"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(24442..24444,24451..24453,24538..24546,
24676..24678,24868..24870,24967..24969))
/locus_tag="Rmag_0020"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(24562..24564)
/locus_tag="Rmag_0020"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene complement(25334..25639)
/locus_tag="Rmag_0021"
/db_xref="GeneID:4555347"
CDS complement(25334..25639)
/locus_tag="Rmag_0021"
/note="PFAM: peptidylprolyl isomerase, FKBP-type;
KEGG: tbd:Tbd_2152 peptidyl-prolyl cis-trans isomerase"
/codon_start=1
/transl_table=11
/product="peptidylprolyl isomerase, FKBP-type"
/protein_id="YP_903295.1"
/db_xref="GI:118602080"
/db_xref="InterPro:IPR001179"
/db_xref="GeneID:4555347"
/translation="MANLKIQNLETGTGAICKVGDSVSMHYTGWLTNSKKFDSSIDRN
KPFDFKLGVIQVIAGWDQSINGMRVSGKRKLTIPSKLAYGEIIGYRRSYSTKCYTSF"
misc_feature complement(<25385..25588)
/locus_tag="Rmag_0021"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; pfam00254"
/db_xref="CDD:201116"
gene complement(25650..26423)
/locus_tag="Rmag_0022"
/db_xref="GeneID:4555348"
CDS complement(25650..26423)
/locus_tag="Rmag_0022"
/note="KEGG: pha:PSHAa0339 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903296.1"
/db_xref="GI:118602081"
/db_xref="GeneID:4555348"
/translation="MHTHLNSGVVQYQLPMGDKLLNMNDLINQSISLEFNGEIVCSNC
KERTNKSYSQGFCYPCCQRLARCDLCIMKPETCHHHLGTCREPQWGLNNCFNPHIVYL
ANSSGIKVGITRKSNIPSRWIDQGAITALPILEMNNRLKSGKIEMALKDYVNDKTNWR
KMLKNEVEHTNLSTKRDDLFKTISHLIDTLSAIMLDNEALEINYPVVKYPSKISSLNF
DKTPKIEGILQGIKGQYLLLDTGVLNIRKFSSYHITLIY"
misc_feature complement(25662..26342)
/locus_tag="Rmag_0022"
/note="Protein of unknown function (DUF2797); Region:
DUF2797; pfam10977"
/db_xref="CDD:151424"
gene complement(26456..27334)
/locus_tag="Rmag_0023"
/db_xref="GeneID:4555349"
CDS complement(26456..27334)
/locus_tag="Rmag_0023"
/EC_number="6.3.2.6"
/note="catalyzes the formation of
(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-
carboxamido)succinate from
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and
L-aspartate in purine biosynthesis; SAICAR synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole-succinocarboxamide
synthase"
/protein_id="YP_903297.1"
/db_xref="GI:118602082"
/db_xref="InterPro:IPR001636"
/db_xref="GeneID:4555349"
/translation="MGTLFNTNLSLPLIQKGKVRDIYDIDDKRMLIVTTDRLSAFDVI
FDDPITNKGIILTEIANFWFEKTRHIIPNHLTLEPLDSILNTKEATLIKGRGIIVKKL
NPLAIEAIVRGYIIGSSWKDYQQTGKVCGIKLPTNLQLAEKLPKAFYTPSTKANLGEH
DANIDFDKTVKILGQGLAEQVKQVSLKIYQFATNYALERDIIIADTKFEFGLDEHNQL
TLMDEVLTPDSSRFWSKIDYQVGTSQKSFDKQIVRDYLETLDWNKSPPASTLPQSIIQ
QIANKYKEVQQRLMQD"
misc_feature complement(26468..27298)
/locus_tag="Rmag_0023"
/note="non-metazoan
5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
(SAICAR) synthase; Region: SAICAR_synt_Sc; cd01414"
/db_xref="CDD:133469"
misc_feature complement(order(26669..26674,26708..26710,26873..26875,
27023..27025,27029..27031,27035..27037,27113..27115,
27239..27241,27245..27247,27266..27271,27275..27277,
27281..27286,27290..27295))
/locus_tag="Rmag_0023"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133469"
misc_feature complement(order(26642..26653,26669..26671,26708..26710,
26714..26722,26852..26854,26873..26875,26879..26881,
26981..26989,26999..27001,27005..27007,27011..27013,
27023..27025,27029..27040,27110..27112,27209..27211,
27245..27247,27269..27271,27275..27286,27290..27292))
/locus_tag="Rmag_0023"
/note="active site"
/db_xref="CDD:133469"
misc_feature complement(order(26642..26653,26714..26722,26852..26854,
26879..26881,26981..26989,26999..27001,27005..27007,
27011..27013,27209..27211))
/locus_tag="Rmag_0023"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133469"
gene complement(27845..28963)
/locus_tag="Rmag_0024"
/db_xref="GeneID:4555350"
CDS complement(27845..28963)
/locus_tag="Rmag_0024"
/note="PFAM: peptidase M23B;
KEGG: pae:PA0667 hypothetical protein"
/codon_start=1
/transl_table=11
/product="peptidase M23B"
/protein_id="YP_903298.1"
/db_xref="GI:118602083"
/db_xref="InterPro:IPR002886"
/db_xref="GeneID:4555350"
/translation="MGKLYTNILLILISFSIASAYANNNAYHFTIKRGDSLSQYFSKL
GLSSRLLANLLFANKNNKKLNQLTIGHKLTIRLSNNRQFKSLTYQLNRKTNLNVILNN
NYFSTILKKQSKQIPINLSITVVRINHSFGVDAQKEGIGFSTINLIVKALSRQLNFNT
DLKKGDRFIIVNNDNIKPVAIIYQSIIKNKSIEAFAYKNKHGHTGYFDRFGHSLSSSF
LKAPLKYKRISSKFQLRRYHPILKTWRPHRAVDYAANYGTPVYSTANGIITTKDKKGA
LGKVVIIQHGFDYVTVYAHLSKYANNLYKDKKVKKGQIIGYVGSTGRSTGPHLHYELH
YKGKRRNPLTYKLPAQKGISRANLQDFKIKVNKILSSL"
sig_peptide complement(28895..28963)
/locus_tag="Rmag_0024"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.999) with cleavage site probability 0.958 at
residue 23"
misc_feature complement(27848..>28765)
/locus_tag="Rmag_0024"
/note="putative peptidase; Provisional; Region: PRK11649"
/db_xref="CDD:183257"
misc_feature complement(27938..28231)
/locus_tag="Rmag_0024"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene complement(28956..30107)
/locus_tag="Rmag_0025"
/db_xref="GeneID:4555351"
CDS complement(28956..30107)
/locus_tag="Rmag_0025"
/EC_number="1.1.1.267"
/note="catalyzes the NADP-dependent rearrangement and
reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to
2-C-methyl-D-erythritol 4-phosphate"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="YP_903299.1"
/db_xref="GI:118602084"
/db_xref="InterPro:IPR003821"
/db_xref="InterPro:IPR013512"
/db_xref="InterPro:IPR013644"
/db_xref="GeneID:4555351"
/translation="MKNITLLGATGSIGKSTLSVVDLHSDKFNIFTLSANTNWQLMLE
LCNKYQPNYAIMVDESSAEKLSTIITTDTQILSGTQALDKVVAHQDTDFVMAAIVGTA
GMSSALCAVKAGKRIMLANKESLILAGDIFMKAVEEFNAELIPVDSEHSAIFQCLQSG
RSGLNKIQLTASGGPFLHTPISKFKYITPNQACAHPNWSMGRKISVDSATMMNKGLEV
IEAYYLFSLTPEQIDVVVHPQSIVHSSVYYKDGSTLSQLGKPDMRTVISYAMSYPQRI
NSGVTALDLTNTPALEFYQPDFEKFTCLKLAFETLNKGGNAMITMNAANEIAVEYFLN
HQINFLDIPKIIDQTLSAMKHTTPNSLEEVVNNDLVAREMTREIIKQYG"
misc_feature complement(28959..30107)
/locus_tag="Rmag_0025"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Provisional; Region: PRK05447"
/db_xref="CDD:180089"
misc_feature complement(29721..30098)
/locus_tag="Rmag_0025"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:202340"
misc_feature complement(29433..29681)
/locus_tag="Rmag_0025"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature complement(28986..29336)
/locus_tag="Rmag_0025"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:205468"
gene complement(30104..30904)
/locus_tag="Rmag_0026"
/db_xref="GeneID:4555352"
CDS complement(30104..30904)
/locus_tag="Rmag_0026"
/note="PFAM: phosphatidate cytidylyltransferase;
KEGG: cps:CPS_1558 phosphatidate cytidylyltransferase"
/codon_start=1
/transl_table=11
/product="phosphatidate cytidylyltransferase"
/protein_id="YP_903300.1"
/db_xref="GI:118602085"
/db_xref="InterPro:IPR000374"
/db_xref="GeneID:4555352"
/translation="MLKQRIITAFILAPLFVWAIFSMSSHYFTQLLLIFVALGAWEFS
YLIKFKRLIARLLLVVGIIACALIIQNNVQIIEFVLYLSILWWIVNLYWILSYPNKTN
LWFNPFIVRVISGVLLLVPMWVALITLQQQYGAKYFLLLMLIIWGADSGAYFVGKAIG
KRKLAPKVSPGKSIEGMIGGIGVALVVMVMFLQYQNIATKQYLSYLLLTIIVASVSVL
SDLFESLFKRISNIKDSGQILPGHGGILDRIDSLTAAAPFFLLGLDLI"
misc_feature complement(30128..30904)
/locus_tag="Rmag_0026"
/note="Cytidylyltransferase family; Region: CTP_transf_1;
cl00347"
/db_xref="CDD:185926"
sig_peptide complement(30815..30904)
/locus_tag="Rmag_0026"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.946) with cleavage site probability 0.568 at
residue 30"
gene complement(30898..31644)
/locus_tag="Rmag_0027"
/db_xref="GeneID:4554914"
CDS complement(30898..31644)
/locus_tag="Rmag_0027"
/EC_number="2.5.1.31"
/note="KEGG: vvy:VV2553 undecaprenyl pyrophosphate
synthase;
TIGRFAM: undecaprenyl diphosphate synthase;
PFAM: Di-trans-poly-cis-decaprenylcistransferase"
/codon_start=1
/transl_table=11
/product="undecaprenyl pyrophosphate synthetase"
/protein_id="YP_903301.1"
/db_xref="GI:118602086"
/db_xref="InterPro:IPR001441"
/db_xref="GeneID:4554914"
/translation="MLCIGIIQLVMSTLKHIAIIMDGNGRWASKHSLPRILGHQQGIK
AVHGVVKACVIRGIKTLTLFAFSSENKNRSTEEVSLLFKLFLGVLKQEVKKLNEHNIR
LKIIGDMSLFPAKIQQTALDAQALLASNIGLTLVIAANYGGQWDIAQAAAKIAKAAID
GDIKASNINIDSFSQYLSLADEPNVDLLIRTSGELRISNFLLWDIAYSEFYFTETLWP
DFNEFELNKAINNFNNRNRRFGIRLKEKSC"
misc_feature complement(30958..31626)
/locus_tag="Rmag_0027"
/note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS);
homodimers which catalyze the successive 1'-4 condensation
of the isopentenyl diphosphate (IPP) molecule to
trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP
to form long-chain polyprenyl...; Region: CIS_IPPS;
cl00230"
/db_xref="CDD:213087"
misc_feature complement(30958..31587)
/locus_tag="Rmag_0027"
/note="Putative undecaprenyl diphosphate synthase; Region:
Prenyltransf; pfam01255"
/db_xref="CDD:201689"
misc_feature complement(31579..31581)
/locus_tag="Rmag_0027"
/note="catalytic residue [active]"
/db_xref="CDD:29593"
misc_feature complement(31567..31578)
/locus_tag="Rmag_0027"
/note="putative FPP diphosphate binding site; other site"
/db_xref="CDD:29593"
misc_feature complement(order(31234..31236,31240..31242,31285..31287,
31306..31308,31387..31395,31399..31404,31444..31458))
/locus_tag="Rmag_0027"
/note="putative FPP binding hydrophobic cleft; other site"
/db_xref="CDD:29593"
misc_feature complement(order(31015..31017,31027..31029,31036..31038,
31048..31050,31057..31062,31141..31143,31168..31170,
31177..31179,31189..31191,31213..31215))
/locus_tag="Rmag_0027"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29593"
misc_feature complement(order(31057..31059,31075..31077))
/locus_tag="Rmag_0027"
/note="putative IPP diphosphate binding site; other site"
/db_xref="CDD:29593"
gene 34314..35081
/locus_tag="Rmag_0028"
/db_xref="GeneID:4554915"
CDS 34314..35081
/locus_tag="Rmag_0028"
/EC_number="4.1.3.-"
/note="catalyzes the conversion of
5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-
1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine
to imidazole-glycerol phosphate,
5-aminoimidazol-4-carboxamideribonucleotide and glutamate;
the HisF subunit acts as a cyclase"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisF"
/protein_id="YP_903302.1"
/db_xref="GI:118602087"
/db_xref="InterPro:IPR003009"
/db_xref="InterPro:IPR004651"
/db_xref="InterPro:IPR006062"
/db_xref="GeneID:4554915"
/translation="MPLAKRIIPCLDVCNGRVVKGTKFVDIKDAGDPVEVAKRYDFEC
ADEITFLDITASIEGRDTMIHMVEAIAEQVFIPLTVGGGIRKAVDVRAMLNAGADKVA
INSAAIFNPNLINQLSEEFGSQCIVIAIDAKKVSDNKWEIFTHGGRKSTGIDAIEWAV
KMTKGDNGAGEVLLTSMDCDGVKTGFDLLLTKAASDAVDVPIIASGGVGNLEHLSEGV
LQGGADAVLAASIFHFGEYTIQQAKQAMQENGIEVRL"
misc_feature 34326..35060
/locus_tag="Rmag_0028"
/note="The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine biosynthesis,
the formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731"
/db_xref="CDD:73393"
misc_feature 34329..35027
/locus_tag="Rmag_0028"
/note="Histidine biosynthesis protein; Region:
His_biosynth; pfam00977"
/db_xref="CDD:201535"
misc_feature order(34371..34373,34464..34466,34560..34562,34623..34628,
34698..34700,34704..34706,34749..34751,34836..34838,
34851..34856,34926..34934,34998..35003)
/locus_tag="Rmag_0028"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73393"
misc_feature order(34434..34436,34449..34451,34515..34517,34527..34529,
34536..34538,34542..34544,34599..34601,34608..34613,
34683..34685,34824..34826,34908..34910,34983..34985)
/locus_tag="Rmag_0028"
/note="glutamase interaction surface [polypeptide
binding]; other site"
/db_xref="CDD:73393"
gene 35150..35680
/locus_tag="Rmag_0029"
/db_xref="GeneID:4554916"
CDS 35150..35680
/locus_tag="Rmag_0029"
/note="KEGG: neu:NE1011 putative transmembrane protein"
/codon_start=1
/transl_table=11
/product="putative transmembrane protein"
/protein_id="YP_903303.1"
/db_xref="GI:118602088"
/db_xref="GeneID:4554916"
/translation="MNSKKELWILLASFVLPIAFGTAFFYLSPTFFTQHTVNYGEFVN
PIITTTKQDITFIDTQSGLQGLWTLTYTTKKCDNICIKVLQDMRTVRILMNEDMRRIQ
NLLLITNKAKTQQVDILVGYASEVFNRQLNQFPENSLFLIDPLGNMMLRYNSKNLDIK
RVIKDLKRLFKYSRIG"
sig_peptide 35150..35215
/locus_tag="Rmag_0029"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.741) with cleavage site probability 0.512 at
residue 22"
gene 35687..36586
/locus_tag="Rmag_0030"
/db_xref="GeneID:4554917"
CDS 35687..36586
/locus_tag="Rmag_0030"
/note="converts protoheme IX and farnesyl diphosphate to
heme O"
/codon_start=1
/transl_table=11
/product="protoheme IX farnesyltransferase"
/protein_id="YP_903304.1"
/db_xref="GI:118602089"
/db_xref="InterPro:IPR000537"
/db_xref="InterPro:IPR006369"
/db_xref="GeneID:4554917"
/translation="MIIPLISDLLALCKLKVVALILLTAEVGMFLAVPAPYLPNGLLV
LSASIGISMAAASAAVFNHVVDEQIDAQMSRTNKRPLPQGKVSRNQALMWGVFLGLVG
LGILQLFVNTITMVLTFVSLIGYAIIYTLYLKRATPQNIVIGGAAGAAPPVLGWTAVS
GTQGIEYACLLFLIVFIWTPPHFWALAIHRVEEYKKVDVPMLPVTHGLAYTRTQILLY
TVLLLLVSLLPYLASMSGLIYLVVAIALGIRFLMYAIKIYNNPDDKRIAWCTFVYSIN
YLMLLFVTLLFDHYWLILPLEVF"
misc_feature 35756..36574
/locus_tag="Rmag_0030"
/note="protoheme IX farnesyltransferase; Provisional;
Region: PRK04375"
/db_xref="CDD:179840"
gene 36587..36778
/locus_tag="Rmag_0031"
/db_xref="GeneID:4554918"
CDS 36587..36778
/locus_tag="Rmag_0031"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903305.1"
/db_xref="GI:118602090"
/db_xref="GeneID:4554918"
/translation="MKGFGQVFKAVTFAMIGVGKKEDLAKDFARTEKQGPWAYIIVGL
IMTFVFIGLIITAVKLVLL"
misc_feature 36596..36772
/locus_tag="Rmag_0031"
/note="Protein of unknown function (DUF2970); Region:
DUF2970; pfam11174"
/db_xref="CDD:204604"
gene complement(37140..38111)
/locus_tag="Rmag_0032"
/db_xref="GeneID:4554919"
CDS complement(37140..38111)
/locus_tag="Rmag_0032"
/note="PFAM: cytochrome oxidase assembly;
KEGG: noc:Noc_3040 cytochrome oxidase assembly"
/codon_start=1
/transl_table=11
/product="cytochrome oxidase assembly"
/protein_id="YP_903306.1"
/db_xref="GI:118602091"
/db_xref="InterPro:IPR003780"
/db_xref="GeneID:4554919"
/translation="MFRKILQVSIILAFIVVILGAYTRLSDAGLGCPDWPGCYGQLSV
PDVKDGTTIQGFSRPLEVAKGWKEMLHRYTASTLGLIILILFFLVLKGKQQRHQSLKL
PGFNAFFVILQGVFGIWTVTLLVHPVIVTLHLMGGFVTTTLLIWMLLNQSKPPAIYQH
TLKKHKFILLITLGALSLQIALGGWTSTNYAALSCGEYFPKCLNVWWPDMDFSGALYW
GPFEINYEYGILENPARSAIQMIHRIGALITTIFILLLIYLFRNYTHLRSNLILITIL
LTIQITLGIFNVVLLLPIIIAVLHNIVALLLLLSIVKLVHKTFKVPT"
misc_feature complement(<37374..38111)
/locus_tag="Rmag_0032"
/note="Uncharacterized protein required for cytochrome
oxidase assembly [Posttranslational modification, protein
turnover, chaperones]; Region: CtaA; COG1612"
/db_xref="CDD:31800"
sig_peptide complement(38025..38111)
/locus_tag="Rmag_0032"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.719) with cleavage site probability 0.253 at
residue 29"
misc_feature complement(<37374..38105)
/locus_tag="Rmag_0032"
/note="Cytochrome oxidase assembly protein; Region:
COX15-CtaA; pfam02628"
/db_xref="CDD:202319"
gene complement(38205..39029)
/locus_tag="Rmag_0033"
/db_xref="GeneID:4554920"
CDS complement(38205..39029)
/locus_tag="Rmag_0033"
/note="KEGG: cvi:CV3790 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903307.1"
/db_xref="GI:118602092"
/db_xref="GeneID:4554920"
/translation="MLQTQRMAKGLNKKAHIKQVSYGAPFVWLKQGVEDFIKCPTLAL
FYGALFTSFTYSYWNFLSNSPTLGDLSAPLLAIVVIIFGPISAMAMYDASKRLSAGEN
LSLGSILMVIKSAFKANGSCPSLFLSVILIVLAIIWMVFTPLIYAVLNTDTFVNQSQT
IIEAILADISNFNNPLFLIVYGIFTIAIAWISFMISWFSFPMVLDQDVDPFTAANASI
RTALANKIVMLIWVPIVGVIVLAGLLTPYFIGMVVAVPILAHATWHAYKSMIGKIE"
misc_feature complement(38217..38981)
/locus_tag="Rmag_0033"
/note="Predicted integral membrane protein (DUF2189);
Region: DUF2189; cl02291"
/db_xref="CDD:154841"
gene 39283..40350
/locus_tag="Rmag_0034"
/db_xref="GeneID:4554921"
CDS 39283..40350
/locus_tag="Rmag_0034"
/EC_number="1.9.3.1"
/note="PFAM: cytochrome c oxidase, subunit II; cytochrome
c, class I; cytochrome C oxidase subunit II, transmembrane
region;
KEGG: pha:PSHAa2872 cytochrome c oxidase, subunit II"
/codon_start=1
/transl_table=11
/product="cytochrome-c oxidase"
/protein_id="YP_903308.1"
/db_xref="GI:118602093"
/db_xref="InterPro:IPR001395"
/db_xref="InterPro:IPR001505"
/db_xref="InterPro:IPR002429"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR009056"
/db_xref="InterPro:IPR011759"
/db_xref="GeneID:4554921"
/translation="MSANVFAEYDFNMTQGVTSISRDIYGLHMMVFWICVAIAVIVFG
VMIYSLVVHRKSQGAVAANFHESTKAELLWTGIPIIILISMAIPASTVLIDLEDTAKA
EMTIKITGHQWKWQYDYPKEGISFISNLKQDSKDVIYSGNRRKNYLLEVDNNLVLPVD
TSIRFLITSNDVIHNWWVPDFGVKQDANPGFINDAWAQIDEVGTYRGQCAELCGKDHG
FMPIVVDVVSKLDYAKWVLKQQAAKAATLAKSNKTWREEELISLGQKVYNTNCSSCHG
ITGKGIPGVFPALKGSSIATGDIKKHINIVLHGKAGTAMASYKNILGDADIAAVITFE
RTAFGNQMGDLIQPAQIKAAR"
misc_feature 39334..39990
/locus_tag="Rmag_0034"
/note="cytochrome c oxidase, subunit II; Region: CoxB;
TIGR02866"
/db_xref="CDD:163049"
misc_feature 39592..39963
/locus_tag="Rmag_0034"
/note="Cytochrome C oxidase subunit II, periplasmic
domain; Region: COX2; pfam00116"
/db_xref="CDD:201014"
misc_feature <40048..40347
/locus_tag="Rmag_0034"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature 40069..40281
/locus_tag="Rmag_0034"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene 40373..41989
/locus_tag="Rmag_0035"
/db_xref="GeneID:4554922"
CDS 40373..41989
/locus_tag="Rmag_0035"
/EC_number="1.9.3.1"
/note="PFAM: cytochrome c oxidase, subunit I;
KEGG: pae:PA0106 cytochrome c oxidase, subunit I"
/codon_start=1
/transl_table=11
/product="cytochrome-c oxidase"
/protein_id="YP_903309.1"
/db_xref="GI:118602094"
/db_xref="InterPro:IPR000883"
/db_xref="GeneID:4554922"
/translation="MTTAIATATTYTNDHHGPEKGLMRWIKTTNHKDIGSLYLWFAFT
MVLIGGAMAMVIRMELFQPGMQLIEPQFFNQMTTMHGLIMVFGAIMPAFVGLGNWLIP
MMIGAPDMALPRMNNWSFWILPFAGGILLSTFFMEGGAPAFGWTFYAPLSTTFAPNST
DFFIFAVHLLGFSSIMGAINIIATVLNMRALEMKLMDMPLFVWTWLITSFLLIGAMPV
LAGAVTMMLTDRNFGTAFFDATGGGDPVLFQHIFWFFGHPEVYIMILPAFGVISHIVP
AFARKPLFGYSSMVYATASIAFLSYIVWAHHMFLTGMPVAGELYFMYATMLIAVPTGV
KIFNWVSTMWRGSMTFEAPMLWAISFVFLFTIGGFSGLMLGIAPADIQYHDTYFVVAH
FHYVLVTGALWSIIAATFYWLPKWTGKMYNETLAKVHFWWAVISVNILFFPQHFLGLA
GMPRRIPDYSLQFADFNMISSIGGFAFGTSFILFTYIVIDCIRNGKPADSRPWEGAKG
LEWTLEPKAQYHSFNTPPTRTLIEQESQHS"
misc_feature 40418..41956
/locus_tag="Rmag_0035"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 1 [Energy production and conversion]; Region:
CyoB; COG0843"
/db_xref="CDD:31185"
misc_feature 40457..41911
/locus_tag="Rmag_0035"
/note="Cytochrome C oxidase subunit I. Cytochrome c
oxidase (CcO), the terminal oxidase in the respiratory
chains of eukaryotes and most bacteria, is a multi-chain
transmembrane protein located in the inner membrane of
mitochondria and the cell membrane of...; Region:
Cyt_c_Oxidase_I; cd01663"
/db_xref="CDD:29934"
misc_feature order(40457..40459,40694..40696,40706..40708,40712..40714,
40733..40735,40853..40855,40865..40867,40919..40921,
40931..40933,40991..40993,41012..41014,41021..41023,
41045..41047,41072..41080,41093..41098,41102..41104,
41132..41134,41243..41245,41252..41254,41261..41266,
41276..41278)
/locus_tag="Rmag_0035"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(40484..40486,40664..40666,40697..40699,40718..40720,
40727..40729,40889..40894,40910..40912,40922..40924)
/locus_tag="Rmag_0035"
/note="D-pathway; other site"
/db_xref="CDD:29934"
misc_feature order(40502..40504,40514..40516,40523..40525,40535..40537,
40772..40777,41618..41620,41837..41839,41846..41848)
/locus_tag="Rmag_0035"
/note="Subunit I/VIIc interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(40544..40546,40553..40558,41642..41644,41651..41656,
41753..41755,41807..41809)
/locus_tag="Rmag_0035"
/note="Subunit I/IV interface [polypeptide binding]; other
site"
/db_xref="CDD:29934"
misc_feature order(40592..40594,41102..41104,41213..41215,41222..41227,
41300..41308,41315..41317,41324..41326,41348..41350,
41372..41374,41381..41383,41402..41410,41444..41446,
41498..41503,41507..41509,41513..41527,41717..41722,
41732..41740,41765..41770)
/locus_tag="Rmag_0035"
/note="Subunit I/II interface [polypeptide binding]; other
site"
/db_xref="CDD:29934"
misc_feature order(40610..40612,41552..41554,41564..41566,41690..41692,
41801..41803)
/locus_tag="Rmag_0035"
/note="Low-spin heme (heme a) binding site [chemical
binding]; other site"
/db_xref="CDD:29934"
misc_feature order(40766..40768,40775..40777)
/locus_tag="Rmag_0035"
/note="Subunit I/VIIa interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(40832..40834,41060..41071)
/locus_tag="Rmag_0035"
/note="Subunit I/VIa interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(40991..40993,41012..41014,41132..41134,41243..41245,
41252..41254,41261..41266,41276..41278)
/locus_tag="Rmag_0035"
/note="Dimer interface; other site"
/db_xref="CDD:29934"
misc_feature order(41102..41104,41117..41122,41510..41512,41522..41527,
41732..41734)
/locus_tag="Rmag_0035"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29934"
misc_feature order(41141..41143,41288..41293,41546..41548)
/locus_tag="Rmag_0035"
/note="Binuclear center (heme a3/CuB) [ion binding]; other
site"
/db_xref="CDD:29934"
misc_feature order(41141..41143,41153..41155,41186..41188,41288..41293,
41366..41368,41375..41377)
/locus_tag="Rmag_0035"
/note="K-pathway; other site"
/db_xref="CDD:29934"
misc_feature order(41216..41218,41228..41230,41906..41908)
/locus_tag="Rmag_0035"
/note="Subunit I/Vb interface [polypeptide binding]; other
site"
/db_xref="CDD:29934"
misc_feature order(41291..41293,41522..41527,41732..41737)
/locus_tag="Rmag_0035"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29934"
misc_feature 41306..41308
/locus_tag="Rmag_0035"
/note="Subunit I/VIb interface; other site"
/db_xref="CDD:29934"
misc_feature 41405..41407
/locus_tag="Rmag_0035"
/note="Subunit I/VIc interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(41549..41551,41732..41737)
/locus_tag="Rmag_0035"
/note="Electron transfer pathway; other site"
/db_xref="CDD:29934"
misc_feature order(41645..41647,41816..41818)
/locus_tag="Rmag_0035"
/note="Subunit I/VIIIb interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(41753..41755,41765..41767)
/locus_tag="Rmag_0035"
/note="Subunit I/VIIb interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
gene 42080..42613
/locus_tag="Rmag_0036"
/db_xref="GeneID:4554923"
CDS 42080..42613
/locus_tag="Rmag_0036"
/note="PFAM: cytochrome c oxidase assembly protein
CtaG/Cox11;
KEGG: mca:MCA0882 cytochrome c oxidase assembly protein,
putative"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase assembly protein
CtaG/Cox11"
/protein_id="YP_903310.1"
/db_xref="GI:118602095"
/db_xref="InterPro:IPR007533"
/db_xref="GeneID:4554923"
/translation="MAEMESRQKITKKFWIKLVIAPILMFFFAYAMVPIYDVFCEITG
FNGTTGRVDSEQKYVVDETRKIEVSFFAMTMSGFPIQFGPKVSSMEVVPGRFYTTSYI
AKNNTDEVVVGQAIPSVAPTDAALYFKKLECFCFNKQVFKPHEQVEMTLRFVIEPELD
ERIKDVSLSYNFFKLKS"
sig_peptide 42080..42175
/locus_tag="Rmag_0036"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.930) with cleavage site probability 0.930 at
residue 32"
misc_feature 42083..42607
/locus_tag="Rmag_0036"
/note="cytochrome C oxidase assembly protein; Provisional;
Region: PRK05089"
/db_xref="CDD:179930"
gene 42631..43515
/locus_tag="Rmag_0037"
/db_xref="GeneID:4554924"
CDS 42631..43515
/locus_tag="Rmag_0037"
/note="PFAM: cytochrome c oxidase, subunit III;
KEGG: hch:HCH_00049 cytochrome-c oxidase, subnunit III"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase, subunit III"
/protein_id="YP_903311.1"
/db_xref="GI:118602096"
/db_xref="InterPro:IPR000298"
/db_xref="GeneID:4554924"
/translation="MNEQDYYVPSGTYWPIIGSIGIVTLFVGFANQMHGASWGGPIMA
LGLAILVFMLFGWFGQVVKESTNGIYNSQVDRSFRWGMSWFIFSEVMFFGAFFGALFY
ARQLSVPWLGGADNNIFTPELWNSFSATWRQIAFNTPGAILQSGITISIPTQLVDAWD
LPALNTALLLLSGATLTFAHHALRSDHRNKIIGWLIATIVLGVLFLGFQITEYGHAYH
DGLKLTSGIYGSTFYMLTGFHGFHVTVGVLMLTVILYRVQKGHFSSNSHFGFEGVAWY
WHFVDVVWLGLFIFVYWL"
misc_feature 42676..43509
/locus_tag="Rmag_0037"
/note="Cytochrome c oxidase subunit III. Cytochrome c
oxidase (CcO), the terminal oxidase in the respiratory
chains of eukaryotes and most bacteria, is a multi-chain
transmembrane protein located in the inner membrane of
mitochondria and the cell membrane of...; Region:
Cyt_c_Oxidase_III; cd01665"
/db_xref="CDD:29485"
misc_feature order(42796..42798,42805..42810,42817..42819,42826..42828,
42829..42831)
/locus_tag="Rmag_0037"
/note="Subunit III/VIIa interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature order(42799..42804,42811..42816,42823..42825,42838..42840,
42871..42876,42883..42885,43375..43377,43396..43398,
43432..43437)
/locus_tag="Rmag_0037"
/note="Phospholipid binding site [chemical binding]; other
site"
/db_xref="CDD:29485"
misc_feature order(42847..42849,42856..42861,42892..42894,42901..42903,
42913..42918,42934..42936,43306..43311,43318..43320,
43330..43332)
/locus_tag="Rmag_0037"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature 42994..42996
/locus_tag="Rmag_0037"
/note="Subunit III/VIb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature order(43018..43023,43030..43032,43162..43164,43240..43242,
43270..43278,43300..43308)
/locus_tag="Rmag_0037"
/note="Subunit III/VIa interface; other site"
/db_xref="CDD:29485"
misc_feature 43198..43200
/locus_tag="Rmag_0037"
/note="Subunit III/Vb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
gene 43758..44504
/locus_tag="Rmag_0038"
/db_xref="GeneID:4554925"
CDS 43758..44504
/locus_tag="Rmag_0038"
/note="KEGG: mca:MCA0131 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903312.1"
/db_xref="GI:118602097"
/db_xref="InterPro:IPR002994"
/db_xref="GeneID:4554925"
/translation="MDRTKCGYDGRIHTLVTKRTIIPAVLILLSIYGLVSLGFWQLER
ADEKWAIEHEIVLAQQSPVQLVTNVDELLNKEYYQVLLKGHYDANKQFIYDNQIVKGN
AGYYVLTPFVLSDKTAILVNRGFVSWHGKREQLTDIKLDNLPRIVKVELIKPVERIKL
KKQPIKSNFPILIQSLNLDELSTLSNYKIIAMLARLDIKASDGFFRQWQPFYGSADKH
LGYALQWFLMASVLSIIALRLLIKKIKKID"
misc_feature 43857..44444
/locus_tag="Rmag_0038"
/note="SURF1 superfamily. Surf1/Shy1 has been implicated
in the posttranslational steps of the biogenesis of the
mitochondrially-encoded Cox1 subunit of cytochrome c
oxidase (complex IV). Cytochrome c oxidase (complex IV),
the terminal electron-transferring...; Region: SURF1;
cd06662"
/db_xref="CDD:119401"
gene 44618..46036
/locus_tag="Rmag_0039"
/db_xref="GeneID:4554926"
CDS 44618..46036
/locus_tag="Rmag_0039"
/note="CcoN; FixN"
/codon_start=1
/transl_table=11
/product="cbb3-type cytochrome c oxidase subunit I"
/protein_id="YP_903313.1"
/db_xref="GI:118602098"
/db_xref="InterPro:IPR000883"
/db_xref="InterPro:IPR004677"
/db_xref="GeneID:4554926"
/translation="MNLTEKYDLGVVKWFAIMASVYLVVGTLLGVYIASELAFPFLNH
LGTDLPYFQFGRLRPLHTNTVIFAFGGSVLMASAFYIVQRTNQTRLWSNKMAWFTFWS
WNTVIVLAVITLPLGLTQSKEYAELEWPIDILITLSWITYLYNFIMTIHIRNSNKVPH
VYVANWFFMGMMVMVTYLHVVNNLSIPVGAFKSYSIFSGVQDAMIQWWWGHNAVGFFL
TAGFLGIMYYFVPKQAQRPIYSYRLSVIHFWALMFGYVWLGAHHLQYTALPDWAGSLG
ATISLAMIIPSWGGALNGILTLSGAWDRLREDYILRFLIMSLAFYAMSTFEGPVMAAK
TVNALSHYTDWTIGHVHSGALGWNIMVAAGAMYHMIEKIYNIKMSQKLLGIHFWVHTI
GTVVYIVAMWVSGIMQGLMWRAYDEYGTLAYTFAESVSAMHPYYVMRAAGGTLVLVGA
IIMLINIVTTIRRSGADQTSNV"
misc_feature 44618..46024
/locus_tag="Rmag_0039"
/note="cbb3-type cytochrome c oxidase subunit I;
Provisional; Region: PRK14488"
/db_xref="CDD:184706"
misc_feature order(44636..44638,44657..44659,44669..44674,44684..44686,
44846..44848,45647..45649,45668..45670,45677..45682,
45851..45856,45938..45940)
/locus_tag="Rmag_0039"
/note="Low-spin heme binding site [chemical binding];
other site"
/db_xref="CDD:29930"
misc_feature order(44714..44716,44723..44725,44756..44758,44765..44767,
44942..44947,44963..44965,44975..44977)
/locus_tag="Rmag_0039"
/note="D-pathway; other site"
/db_xref="CDD:29930"
misc_feature order(45209..45211,45224..45229,45626..45628,45638..45643,
45851..45853)
/locus_tag="Rmag_0039"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29930"
misc_feature order(45248..45250,45398..45403,45662..45664)
/locus_tag="Rmag_0039"
/note="Binuclear center (active site) [active]"
/db_xref="CDD:29930"
misc_feature order(45248..45250,45260..45262,45293..45295,45398..45403,
45476..45478,45485..45487)
/locus_tag="Rmag_0039"
/note="K-pathway; other site"
/db_xref="CDD:29930"
misc_feature order(45401..45403,45638..45643,45851..45856)
/locus_tag="Rmag_0039"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29930"
gene 46050..46781
/locus_tag="Rmag_0040"
/db_xref="GeneID:4554927"
CDS 46050..46781
/locus_tag="Rmag_0040"
/note="CcoO; FixO"
/codon_start=1
/transl_table=11
/product="cbb3-type cytochrome c oxidase subunit II"
/protein_id="YP_903314.1"
/db_xref="GI:118602099"
/db_xref="InterPro:IPR003468"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4554927"
/translation="MVNKNVKESLQVKLEKNIFGMYLFMALSVSLAGIVEIVPLFTNP
EAVKDKVIAIDGSTKSLLWPRSEGQTLSNWAPGDGVRPLTALELAGRDIYQREGCYLC
HSQMIRPFRDEKERYGHFSLAVESKYDHPFQWGSKRTGPDLARVGGKYSDEWHILHLR
HPQEVVPESVMPKYRFLESALVDGETIATHMSGLSKVGVPYTQADIAQAPAMVEGKNE
MDAMVAYMQSLGSMIKFEDGVVYRE"
misc_feature 46074..46754
/locus_tag="Rmag_0040"
/note="Cbb3-type cytochrome oxidase, cytochrome c subunit
[Energy production and conversion]; Region: CcoO; COG2993"
/db_xref="CDD:32812"
misc_feature 46086..46766
/locus_tag="Rmag_0040"
/note="cbb3-type cytochrome c oxidase subunit II;
Provisional; Region: PRK14487"
/db_xref="CDD:184705"
gene 46945..47847
/locus_tag="Rmag_0041"
/db_xref="GeneID:4554928"
CDS 46945..47847
/locus_tag="Rmag_0041"
/note="KEGG: tcx:Tcr_1963 cytochrome c oxidase, cbb3-type,
subunit III"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase, cbb3-type, subunit III"
/protein_id="YP_903315.1"
/db_xref="GI:118602100"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4554928"
/translation="MSEHKNPLPGENNTGHFWDEENDIRELNNRPPRWYMLSLYIGIF
AIVAYTLYYPTIPWFGGHNKGFASWTQISEMNESITQLEAYREKRFADTEKSIAEKSL
EEIVLDDELRAYAIKTAKVLFGDNCAACHGSAGQGNVGFPVLADDDWLYGGKLSQIST
TIANGRKGNMPARMLGISDADANTLATFLIETGKGKNGNPDPASKALYMSKGCIACHG
PNMKGNQLLGSANLSDSIYRFKADNQHASVVRTILHGVGQVSDPLTQDAVMPAFGHSN
VIDAVQIKKLTVYVHQLGDGIVVK"
misc_feature 46984..47832
/locus_tag="Rmag_0041"
/note="cytochrome c oxidase, cbb3-type, subunit III;
Region: ccoP; TIGR00782"
/db_xref="CDD:129864"
misc_feature 47287..47511
/locus_tag="Rmag_0041"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
misc_feature 47557..47814
/locus_tag="Rmag_0041"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
gene 47921..47996
/locus_tag="Rmag_R0001"
/note="tRNA-Thr1"
/db_xref="GeneID:4555517"
tRNA 47921..47996
/locus_tag="Rmag_R0001"
/product="tRNA-Thr"
/db_xref="GeneID:4555517"
gene complement(49389..49970)
/locus_tag="Rmag_0042"
/db_xref="GeneID:4554929"
CDS complement(49389..49970)
/locus_tag="Rmag_0042"
/note="PFAM: outer membrane lipoprotein carrier protein
LolA;
KEGG: pae:PA2614 periplasmic chaperone LolA"
/codon_start=1
/transl_table=11
/product="outer membrane lipoprotein carrier protein LolA"
/protein_id="YP_903316.1"
/db_xref="GI:118602101"
/db_xref="InterPro:IPR004564"
/db_xref="GeneID:4554929"
/translation="MTNFLSTLILIFSNFSFANSNHGFSNFFNSFERLSANFTQITYS
NTGTLLASSSGTLLFKRPQQLIWHTLIPNERILLLNNTELWLIDIELEQASLIQATNL
TQTPLYWLISQPSDISHTPQYTHTKDKIDWYSTQQANQLSFGFKDDVLQAITFNNKLD
QTILVNFDSISINPNIKINAFELNLAPEFDVLR"
sig_peptide complement(49914..49970)
/locus_tag="Rmag_0042"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.997) with cleavage site probability 0.989 at
residue 19"
misc_feature complement(49428..49871)
/locus_tag="Rmag_0042"
/note="Outer membrane lipoprotein carrier protein LolA;
Region: LolA; cl01065"
/db_xref="CDD:207301"
gene complement(49963..52230)
/locus_tag="Rmag_0043"
/db_xref="GeneID:4554930"
CDS complement(49963..52230)
/locus_tag="Rmag_0043"
/note="PFAM: cell divisionFtsK/SpoIIIE;
KEGG: sde:Sde_1693 cell division protein FtsK"
/codon_start=1
/transl_table=11
/product="DNA translocase FtsK"
/protein_id="YP_903317.1"
/db_xref="GI:118602102"
/db_xref="InterPro:IPR002543"
/db_xref="GeneID:4554930"
/translation="MKKINKISTKRYSKKPRTKIVSEILFIFLSAVGLIFLSALFTYS
ANENPYSGDVALVAPVANLSGVFGAYLSDISLSILGYGAYLIPISLIWLGWNIHKRTD
QEKPKYSVTTLRFIALVTLIVFSTAFLTQNFVDTSTSGGYIGITMHRYFGILFGSAAL
IIYLSIMMISFSIASSTSWINIFSSIRDILNRIFTKILDIRTQSKTKKAIKTSVTSKS
STLTKIKKGKERSNKNIKKSTSYNLFNTTIVTGLPSLDLLDEPTEHTMGYSKQALKEM
SQQVEIKLKDFGFYVSVTTVTPGPVVTQFEISLAPGVKVSQIMNLNKDLARALLVKSV
RIVDVIPGKPVIGLEIPNTQREIISLKEILASENFIKSSSILTMGLGKNINGIPITAN
LSKMPHLLVAGATGMGKSVGLNAMILSVLFKAKPEEVRIIMIDPKIVELACYADIPHL
LTPVITDMNQAASALWWCVNEMERRYSLLAKFGVRNIEGFNEKVKKYKDEGKPLLDSS
FNSSTADEDETVPELEVLPLIMLVIDEYADMLGALAQEDRAKAKRVEMLIVRLAQKAR
ASGVHIIIATQRPSVDVITGLIKSNIPTRIAFKVSSKVDSRTILDQGGAEQLLGMGDM
LYMTPGMSHLTRVHGAFVDDGEIERVVSFLKENSETNYLDDILNTHSESDNLQDSNST
LDTSSELDALYDEAVQIVTSSGRASISSLQRRMRIGYNRAARIIEDMENSGVVSSMNK
SGNRQVLAPKLMTND"
sig_peptide complement(52096..52230)
/locus_tag="Rmag_0043"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.506 at
residue 45"
misc_feature complement(51739..52176)
/locus_tag="Rmag_0043"
/note="Domain of unknown function (DUF4117); Region:
DUF4117; pfam13491"
/db_xref="CDD:205669"
misc_feature complement(50488..51153)
/locus_tag="Rmag_0043"
/note="FtsK/SpoIIIE family; Region: FtsK_SpoIIIE;
pfam01580"
/db_xref="CDD:190044"
misc_feature complement(49981..50169)
/locus_tag="Rmag_0043"
/note="Ftsk gamma domain; Region: Ftsk_gamma; pfam09397"
/db_xref="CDD:204229"
gene 52279..53223
/locus_tag="Rmag_0044"
/db_xref="GeneID:4554931"
CDS 52279..53223
/locus_tag="Rmag_0044"
/note="TIGRFAM: thioredoxin reductase;
PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase;
KEGG: tcx:Tcr_0763 thioredoxin reductase"
/codon_start=1
/transl_table=11
/product="thioredoxin reductase"
/protein_id="YP_903318.1"
/db_xref="GI:118602103"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000759"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR005982"
/db_xref="InterPro:IPR008255"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4554931"
/translation="MSENKHCKVLIIGSGPAGYSAAVYAARANLNPIIVSGMEQGGQL
MSTMGVDNWPGDVAGVQGPDLMARMKKHAERFDTQILNDTITSVNFTKRPFVLKGETT
TYTADAVIIATGSSAHYLGLESEEKFKGKGVSACATCDGFFYRGQKVAVIGGGNTAVE
EALFLSNIADHVTIIHRKDKFSSEKILSNQLIEKAKIGNITIEYNHNLDKVLGDTMGV
TGLRLKDNDGKTKNIDVHGVFIAIGHTPNTAIFEGHLEMSHGYIKVQSGTQGNAMQTS
VEGIFAAGDVTDHIYRQAITSAGSGCMSALDAERFLGE"
misc_feature 52279..53214
/locus_tag="Rmag_0044"
/note="thioredoxin reductase; Provisional; Region:
PRK10262"
/db_xref="CDD:182343"
sig_peptide 52279..52356
/locus_tag="Rmag_0044"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.861) with cleavage site probability 0.851 at
residue 26"
misc_feature 52720..52962
/locus_tag="Rmag_0044"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene 53269..53344
/locus_tag="Rmag_R0002"
/note="tRNA-Phe1"
/db_xref="GeneID:4555518"
tRNA 53269..53344
/locus_tag="Rmag_R0002"
/product="tRNA-Phe"
/db_xref="GeneID:4555518"
gene complement(54174..55136)
/gene="pyrB"
/locus_tag="Rmag_0045"
/db_xref="GeneID:4554932"
CDS complement(54174..55136)
/gene="pyrB"
/locus_tag="Rmag_0045"
/EC_number="2.1.3.2"
/note="catalyzes the transfer of the carbamoyl moiety from
carbamoyl phosphate to L- aspartate in pyrimidine
biosynthesis"
/codon_start=1
/transl_table=11
/product="aspartate carbamoyltransferase catalytic
subunit"
/protein_id="YP_903319.1"
/db_xref="GI:118602104"
/db_xref="InterPro:IPR002082"
/db_xref="InterPro:IPR006130"
/db_xref="InterPro:IPR006131"
/db_xref="InterPro:IPR006132"
/db_xref="GeneID:4554932"
/translation="MKKDLISNHIQLDDSGKLIHLLGLEGLSKQYLIHILDTADSLID
VSGNLKKSKALDDIFVANLFFEPSTRTRNTFEIAAMRSSANVINVDLANSALKKNEDL
LNTMRTLKAMQIDMFVIRHKQNGLPHHVVQHLKDVSILNAGDGINAHPTQALLDMLSI
RQHKKTFENLSVAIVGDITHSRVAHSDIQALKTLGTTDIRLIAPKVLQYNLAPCSVVK
HFDDIEPGLKNCDVVIVLRLQKERMIEADIPNEQEYFDNFGLTPKRLALAKPDAIVMH
PGPTNRGVEIDSNVADGNQSIILQQVTNGIAVRMAVMQILVNKS"
misc_feature complement(54177..55094)
/gene="pyrB"
/locus_tag="Rmag_0045"
/note="aspartate carbamoyltransferase catalytic subunit;
Provisional; Region: pyrB; PRK00856"
/db_xref="CDD:179144"
misc_feature complement(54648..55079)
/gene="pyrB"
/locus_tag="Rmag_0045"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:202362"
misc_feature complement(54189..54635)
/gene="pyrB"
/locus_tag="Rmag_0045"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:201065"
gene complement(55117..55545)
/locus_tag="Rmag_0046"
/db_xref="GeneID:4554808"
CDS complement(55117..55545)
/locus_tag="Rmag_0046"
/note="PFAM: Holliday junction resolvase YqgF;
SMART: Resolvase, RNase H domain protein fold;
KEGG: cbu:CBU_2094 putative Holliday junction resolvase"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase YqgF"
/protein_id="YP_903320.1"
/db_xref="GI:118602105"
/db_xref="InterPro:IPR005227"
/db_xref="InterPro:IPR006641"
/db_xref="GeneID:4554808"
/translation="MNISAYLGFDVGTKRTGIAIANSLTMQATGIKVIKHHKNGSTNW
VAFNEVISAHNINKFVVGLPFNQQGKEQTMTFIAKSFGNKLKNRYQIEVEFIDEYLSS
NEAKKLLKYNHHHHNAQRDDVDKQSSQLILQTWLNEKRFD"
misc_feature complement(55132..55530)
/locus_tag="Rmag_0046"
/note="Uncharacterized protein family (UPF0081); Region:
UPF0081; pfam03652"
/db_xref="CDD:202719"
gene complement(55542..56726)
/locus_tag="Rmag_0047"
/db_xref="GeneID:4554809"
CDS complement(55542..56726)
/locus_tag="Rmag_0047"
/note="TIGRFAM: lytic murein transglycosylase;
PFAM: Peptidoglycan-binding domain 1 protein;
KEGG: sat:SYN_02632 membrane-bound lytic murein
transglycosylase B"
/codon_start=1
/transl_table=11
/product="lytic murein transglycosylase"
/protein_id="YP_903321.1"
/db_xref="GI:118602106"
/db_xref="InterPro:IPR002477"
/db_xref="InterPro:IPR011970"
/db_xref="GeneID:4554809"
/translation="MLRFIYFLLMTSLVYADDTQGLSNTYSFEQFLSNIRFQATKLGI
SQTTLNNAFNDLTPNPKVLEYDRNQAEFNLNFWRYLNLRVNQNRLDKGMEKLQQYQKY
LQENYKKYGVPSQIVVAFWGLETNYGKNVGKMHLIRSLATLSFDKRRREFFTHELLTL
LKLIDEKKLPLNAQGSWAGAMGNMQFIPTNVAAYAIDANTDGKIDLWHTQADILASAA
HFLKKNGWHQGERWGREVNIPKAFNYHLANLSTKKTVNEWQTLGIRTIYNTNLPNSTM
QASLILPMGYNGPAFLVYQNFHAILRWNHSILYALSVGHLSDRLIGANQLFAKSITEP
SLSRNNIKQIQTTLNQLGFDTGEPDGIPGPRTRHAARAYQKENDLPIDGYVGYQLLQQ
LQ"
sig_peptide complement(56676..56726)
/locus_tag="Rmag_0047"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.946) with cleavage site probability 0.946 at
residue 17"
misc_feature complement(55773..56648)
/locus_tag="Rmag_0047"
/note="Transglycosylase SLT domain; Region: SLT_2;
pfam13406"
/db_xref="CDD:205584"
misc_feature complement(<56031..56231)
/locus_tag="Rmag_0047"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature complement(order(56067..56069,56166..56168,56229..56231))
/locus_tag="Rmag_0047"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature complement(56229..56231)
/locus_tag="Rmag_0047"
/note="catalytic residue [active]"
/db_xref="CDD:29556"
misc_feature complement(55569..55718)
/locus_tag="Rmag_0047"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:201815"
gene 56739..57665
/locus_tag="Rmag_0048"
/db_xref="GeneID:4554810"
CDS 56739..57665
/locus_tag="Rmag_0048"
/note="PFAM: ApbE family lipoprotein;
KEGG: sde:Sde_1803 thiamine biosynthesis lipoprotein"
/codon_start=1
/transl_table=11
/product="ApbE family lipoprotein"
/protein_id="YP_903322.1"
/db_xref="GI:118602107"
/db_xref="InterPro:IPR003374"
/db_xref="GeneID:4554810"
/translation="MPTLLIIFIFLFLSACSADETRQTITGTTMGTSYSIKINNNYVS
QLMIDRRLDEIEQIFSTWNETSELSQLNKAPINQWIKVSDELFFVLSQAKKIHKQTQG
FFDSGMGRLINIWGFGTIKVQEKPSLEKIGQALAISSIEYLRLDNSRVKKLKDVHINL
SAIAKGYGVDVVTNILIKKGLKNFMVEIGGEVMVQGQWTIGIEKPNHSMPIAIELQNQ
AVATSGDYRNYLKWQGKKYQHIINPHTGLPASTNLSSVSVIHNSAMIADAYATAMMAM
GSQKAQILAQQLNLSVVLILSQQYDFKVLKIR"
sig_peptide 56739..56795
/locus_tag="Rmag_0048"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.988) with cleavage site probability 0.784 at
residue 19"
misc_feature 56892..57623
/locus_tag="Rmag_0048"
/note="ApbE family; Region: ApbE; pfam02424"
/db_xref="CDD:202238"
gene 57788..58950
/locus_tag="Rmag_0049"
/pseudo
/db_xref="GeneID:4555462"
gene 58950..59342
/locus_tag="Rmag_0050"
/db_xref="GeneID:4554811"
CDS 58950..59342
/locus_tag="Rmag_0050"
/note="TIGRFAM: CrcB protein;
PFAM: Camphor resistance CrcB protein;
KEGG: lpn:lpg0512 CrcB protein, camphor resistance"
/codon_start=1
/transl_table=11
/product="camphor resistance protein CrcB"
/protein_id="YP_903323.1"
/db_xref="GI:118602108"
/db_xref="InterPro:IPR003691"
/db_xref="GeneID:4554811"
/translation="MSVLLTILLIGVGATIGASMRYYLIQLMNTTLGSGFPYGTLGVN
VLGSFLAGMLVVIVLEKAALREAYRLMLLIGLTGSLTTMSTLSWESIEMISLGHYGQA
GLNILLNVVLSLSAVGIGTALTRYLLIS"
misc_feature 58968..59324
/locus_tag="Rmag_0050"
/note="CrcB-like protein; Region: CRCB; cl09114"
/db_xref="CDD:208979"
gene complement(59339..60301)
/locus_tag="Rmag_0051"
/db_xref="GeneID:4554812"
CDS complement(59339..60301)
/locus_tag="Rmag_0051"
/EC_number="6.3.2.3"
/note="KEGG: tcx:Tcr_1825 glutathione synthetase;
TIGRFAM: glutathione synthetase;
PFAM: glutathione synthetase domain protein; glutathione
synthetase, ATP-binding; RimK domain protein ATP-grasp"
/codon_start=1
/transl_table=11
/product="glutathione synthase"
/protein_id="YP_903324.1"
/db_xref="GI:118602109"
/db_xref="InterPro:IPR004215"
/db_xref="InterPro:IPR004218"
/db_xref="InterPro:IPR006284"
/db_xref="InterPro:IPR011761"
/db_xref="InterPro:IPR013651"
/db_xref="GeneID:4554812"
/translation="MKKIKIAVLMNDISTINPKKDSSLAMMLEASKRGWEIYTFDTTD
LFAQDGLVFADCAKTTVSNNLDHWFERKTNVVMTLDEFDVILMRKDPPFDMTYIYSTY
LLEQAENKGVLVVNKPQSLRDANEKLFALNFPHCMPKTLVSANQNKIKAFIKTQNTAV
IKPLDGMGGYDIFKLESYDITIDAVLKRLTNNGKHPIMAQAFLPDIDKGDKRILLING
KPVDYALARIPAKGNFKGNLAAGAKGVGQLLSDRDRYLCEQIAPTLKTKGLIFVGLDV
IGDYITEINVTSPTCIRELDTQFNLNIAGELLNVIEQKISTNRY"
misc_feature complement(59354..60292)
/locus_tag="Rmag_0051"
/note="glutathione synthetase; Provisional; Region:
PRK05246"
/db_xref="CDD:179971"
misc_feature complement(59936..60292)
/locus_tag="Rmag_0051"
/note="Prokaryotic glutathione synthetase, N-terminal
domain; Region: GSH-S_N; pfam02951"
/db_xref="CDD:190485"
misc_feature complement(59405..59926)
/locus_tag="Rmag_0051"
/note="Prokaryotic glutathione synthetase, ATP-grasp
domain; Region: GSH-S_ATP; pfam02955"
/db_xref="CDD:202486"
gene 60338..60414
/locus_tag="Rmag_R0003"
/note="tRNA-Met1"
/db_xref="GeneID:4555576"
tRNA 60338..60414
/locus_tag="Rmag_R0003"
/product="tRNA-Met"
/db_xref="GeneID:4555576"
gene 60518..60982
/locus_tag="Rmag_0052"
/db_xref="GeneID:4554813"
CDS 60518..60982
/locus_tag="Rmag_0052"
/note="in Streptococcus pneumoniae this gene was found to
be essential; structure determination of the Streptococcus
protein shows that it is similar to a number of other
proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903325.1"
/db_xref="GI:118602110"
/db_xref="InterPro:IPR003728"
/db_xref="GeneID:4554813"
/translation="MARVTDKITHLIELVIKDMCYELVGIEYVASGKHSILRVFIDTD
KKGVGVNDCEKVSRQLSSIFDVEEPISGQYTLEVSSPGIERPLFHKEHYQRFLGANVK
LRMVRPIDGRRNFFGVIGCVNEADNTFELVGELDLVILDIDLIEKANLVVDF"
misc_feature 60518..60979
/locus_tag="Rmag_0052"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:178857"
misc_feature 60518..>60886
/locus_tag="Rmag_0052"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
misc_feature 60761..60979
/locus_tag="Rmag_0052"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature order(60827..60829,60833..60835,60854..60856,60860..60862,
60878..60880,60899..60901,60926..60934,60938..60943,
60947..60964)
/locus_tag="Rmag_0052"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature order(60884..60886,60890..60892,60938..60940)
/locus_tag="Rmag_0052"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene 61014..62489
/locus_tag="Rmag_0053"
/db_xref="GeneID:4554814"
CDS 61014..62489
/locus_tag="Rmag_0053"
/note="KEGG: mca:MCA1316 N utilization substance protein
A;
TIGRFAM: transcription termination factor NusA;
PFAM: RNA binding S1 domain protein; KH, type 1, domain
protein; NusA N-terminal domain protein;
SMART: KH domain protein"
/codon_start=1
/transl_table=11
/product="NusA antitermination factor"
/protein_id="YP_903326.1"
/db_xref="GI:118602111"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR004088"
/db_xref="InterPro:IPR010213"
/db_xref="InterPro:IPR010214"
/db_xref="InterPro:IPR013735"
/db_xref="GeneID:4554814"
/translation="MDGKELFLMVEAISNEKNISKEEVLESLEEALAIATKKRNNIDA
YVEINRQTGEFLTFRQWMVVADGETFVDDDGTEFDSELHVYAKDASGVAVDDYVRKPI
ETQKFGRIAAQIVKQVIVQKVREAEREVIVNDYSSRIGEVVMVTVKRVDRGNVYVDTG
GGVDGMIPKFDLIPNESVRKNDRLRAYIKEVKPSVRGAQIFLSRSMPEMMIELFKMEV
PEISEGVIEIMGGSRDPGLRSKLAVRAKDRRIDPIGSCIGMRGARVQAVSNELNAERV
DIILWDEDHAQFVINAMAPAQVSSIIVDEDKHSMDIAVEDDQLALAIGRGGQNIKLAS
RLTGWRLNVMSTTQADEKQAQETLKISDKLADQLGVDSEVAGVLIEEGFGSVGELVDA
DAQVLENIEEFDASMVEELQERASDAQLVQALGDAEASELLMSVEGVGEDLASALIEA
DIVTVDDLAELSIDDLLDIQNMDTEIASSVIMIARENEGWF"
misc_feature 61023..62438
/locus_tag="Rmag_0053"
/note="transcription elongation factor NusA; Validated;
Region: nusA; PRK09202"
/db_xref="CDD:181696"
misc_feature 61026..61403
/locus_tag="Rmag_0053"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature 61422..61625
/locus_tag="Rmag_0053"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:88421"
misc_feature order(61455..61457,61479..61481,61509..61511,61515..61517)
/locus_tag="Rmag_0053"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88421"
misc_feature order(61461..61463,61473..61475,61503..61505,61509..61511,
61608..61610)
/locus_tag="Rmag_0053"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:88421"
misc_feature 61716..61922
/locus_tag="Rmag_0053"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature 61866..62045
/locus_tag="Rmag_0053"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature 61983..61994
/locus_tag="Rmag_0053"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
misc_feature 62121..62267
/locus_tag="Rmag_0053"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
misc_feature 62328..62471
/locus_tag="Rmag_0053"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
gene 62546..64993
/gene="infB"
/locus_tag="Rmag_0054"
/db_xref="GeneID:4554815"
CDS 62546..64993
/gene="infB"
/locus_tag="Rmag_0054"
/note="Protects formylmethionyl-tRNA from spontaneous
hydrolysis and promotes its binding to the 30S ribosomal
subunits during initiation of protein synthesis. Also
involved in the hydrolysis of GTP during the formation of
the 70S ribosomal complex"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_903327.1"
/db_xref="GI:118602112"
/db_xref="InterPro:IPR000178"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006847"
/db_xref="GeneID:4554815"
/translation="MAHTVQTLSKLLKKTPDEVITILANAGVDGKNSDSAISAEERKI
LMSSLSKRSSSKSSMFSFSKTGIKSSANSASGAKVQVKKKRLTKSATATDEQPEIAVN
EVAQAVQVALDAGRDADKKLLAQDAKRLEMVRLQKTQAEVLKAQKKTVKQAQAQEIEK
KAEKPKMIDKFKEDKKPKRLRNTLNGNNTRRQLHVARHNPNRKLKKKDRTRLSQKVQE
EQAQHAFQKPIEKVVHEIAIAENIKVTELAQKMATKAGEVLKVLMGMGVMATLNDVID
QDTAMLVVEEMGHKSIASVEETVEDVLIEQLKSSGNEKARPPVVTIMGHVDHGKTSLL
DYIRQAKVTHGEAGGITQHIGAYQVQSNGNTITFIDTPGHAAFSKMRSRSANATDIVI
LVVAADDGVMPQTIESIKHVQTAGVPMIVAINKIDKEGIDIDKIKQVLSTHNVISEDW
GGDVMMIPVSAYTGEGVDALLDAISLTAEVLEFSAVIKALARGTVLEARLEKGRGKVT
TILVQSGTLNKGDIMIAGFEYGKVKQIVDDKGKVLKSATPSMPVEVLGLSGVPNSGDE
VLVVDSERKAREVADFRKAKNREAQLQKQQASKMENFLMKMEESNVSTVNVLLKADVR
GSAQALIEALEGLSTDEAKVKVVSSGVGGINNTDITLAATSNALVLGFNVRADAVARK
TADNEGVRIEYYSIIYNLIDDVKTIMSGLLSPELSENIIGIASVKSVFRSQKMGDIAG
CMVEEGVVRRDSLIRVLRDSVVIFEGWLESLRRFKDNVNEVKSGTECGIGVLNYTDIQ
PGDQIEVFERIERIRTL"
misc_feature 62555..64987
/gene="infB"
/locus_tag="Rmag_0054"
/note="translation initiation factor IF-2; Validated;
Region: infB; PRK05306"
/db_xref="CDD:180006"
misc_feature 63263..63415
/gene="infB"
/locus_tag="Rmag_0054"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature 63497..63988
/gene="infB"
/locus_tag="Rmag_0054"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature 63515..63538
/gene="infB"
/locus_tag="Rmag_0054"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature order(63518..63520,63524..63526,63536..63541,63548..63550,
63557..63562,63608..63613,63665..63670,63737..63742,
63854..63856)
/gene="infB"
/locus_tag="Rmag_0054"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature order(63521..63541,63668..63670,63815..63820,63824..63829,
63923..63931)
/gene="infB"
/locus_tag="Rmag_0054"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature 63590..63610
/gene="infB"
/locus_tag="Rmag_0054"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature 63596..63598
/gene="infB"
/locus_tag="Rmag_0054"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature 63653..63664
/gene="infB"
/locus_tag="Rmag_0054"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature 63659..63715
/gene="infB"
/locus_tag="Rmag_0054"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature 63815..63826
/gene="infB"
/locus_tag="Rmag_0054"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature 63923..63931
/gene="infB"
/locus_tag="Rmag_0054"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature 64016..64297
/gene="infB"
/locus_tag="Rmag_0054"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature 64340..64660
/gene="infB"
/locus_tag="Rmag_0054"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature 64709..64960
/gene="infB"
/locus_tag="Rmag_0054"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene 65011..65349
/locus_tag="Rmag_0055"
/db_xref="GeneID:4554816"
CDS 65011..65349
/locus_tag="Rmag_0055"
/note="PFAM: ribosome-binding factor A;
KEGG: lpp:lpp2819 ribosome-binding factor A"
/codon_start=1
/transl_table=11
/product="ribosome-binding factor A"
/protein_id="YP_903328.1"
/db_xref="GI:118602113"
/db_xref="InterPro:IPR000238"
/db_xref="GeneID:4554816"
/translation="MLEQTSYRVERISELIRRELTLLLKTTTKDPRLSGVMITDVLAS
RDLSSAKVFYTVTKEDRTVVEPILSKASGFFRSRLSKTLDLRHTPALGFIFDSASNTG
ARIEQLLSKL"
misc_feature 65023..65346
/locus_tag="Rmag_0055"
/note="ribosome-binding factor A; Validated; Region: rbfA;
PRK00521"
/db_xref="CDD:179054"
gene 65374..66282
/locus_tag="Rmag_0056"
/db_xref="GeneID:4554817"
CDS 65374..66282
/locus_tag="Rmag_0056"
/EC_number="4.2.1.70"
/note="KEGG: pmu:PM0756 tRNA pseudouridine 55 synthase;
TIGRFAM: tRNA pseudouridine synthase B;
PFAM: pseudouridylate synthase TruB domain protein"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_903329.1"
/db_xref="GI:118602114"
/db_xref="InterPro:IPR002501"
/db_xref="InterPro:IPR004510"
/db_xref="GeneID:4554817"
/translation="MSRRNPKGRDINGIVLLDKDVGLSSNAALQKVKRLFFAKKAGHT
GALDPLASGILPICLGQATKIAQFLLENDKSYFVRSKLGQMTDTGDCEGSIIKTQSFE
HLNEREIVNTAISFIGDILQIPPMYSALKRDGHPLYKLARQGVEVKRESRPVTIHKMT
YLGYANGILSLEITCSKGTYIRTLIEDIGKKLGCGAHVVELRRTGFAHIDISQTFKFS
DLEALALDNYQTLDDKILASEAMLPNLENVYLSEAQSVNIKFGREIQTDKQGLFKVKL
FDEKKQFFGIGECQENGTIVPKRLFI"
misc_feature 65380..66276
/locus_tag="Rmag_0056"
/note="tRNA pseudouridine synthase B; Provisional; Region:
truB; PRK05033"
/db_xref="CDD:179918"
misc_feature 65410..66042
/locus_tag="Rmag_0056"
/note="Pseudouridine synthase, Escherichia coli TruB like;
Region: PseudoU_synth_EcTruB; cd02573"
/db_xref="CDD:211339"
misc_feature order(65443..65445,65449..65451,65458..65460,65494..65502,
65506..65520,65560..65562,65569..65574,65581..65583,
65593..65595,65599..65601,65752..65766,65827..65829,
65902..65919,65980..65982)
/locus_tag="Rmag_0056"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:211339"
misc_feature order(65506..65517,65917..65919)
/locus_tag="Rmag_0056"
/note="active site"
/db_xref="CDD:211339"
misc_feature 66115..66276
/locus_tag="Rmag_0056"
/note="Pseudouridine synthase II TruB, C-terminal; Region:
TruB-C_2; pfam09157"
/db_xref="CDD:204153"
gene 66845..68116
/locus_tag="Rmag_0057"
/db_xref="GeneID:4554818"
CDS 66845..68116
/locus_tag="Rmag_0057"
/EC_number="6.3.4.13"
/note="catalyzes the formation of
N(1)-(5-phospho-D-ribosyl)glycinamide from
5-phospho-D-ribosylamine and glycine in purine
biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylamine--glycine ligase"
/protein_id="YP_903330.1"
/db_xref="GI:118602115"
/db_xref="InterPro:IPR000115"
/db_xref="InterPro:IPR011761"
/db_xref="GeneID:4554818"
/translation="MKVLVIGSGGREHAFAWQCAKFDTVSQVFVAPGNAGTQLENKLT
NVGIAAEDMEGLIAFVKVNKIDLTIVGPEAPLVIGVVDRFQEEDLVIFGPTKAASQLE
GSKAFCKYFLERNNIPTAYYGVFTNVDSAIQYVKNKGTPIVIKADGLATGKGVIIAHT
QAEAEGVIINMLQDNRFGEAGSRVVIEEFLSGEEASFIVMCDGKNVLPMATSQDHKTR
DNGDKGPNTGGMGAYSPAPIVTDEIFQTIMTKVIYPTVDAMAAEGNIYTGFLYAGLMI
DQDNNFKVLEYNCRFGDPETQPIMMRLRSNLADLCLLATQQKLDQASIEWDERICLGV
VLAAKGYPNAYNTSESIILPENSQDAKVFHAGTKLENGKILSSGGRVLCATALGESIL
DAKTKAYQLVKKINWKGAYYRDDIGFKAVDG"
misc_feature 66845..68107
/locus_tag="Rmag_0057"
/note="phosphoribosylamine--glycine ligase; Provisional;
Region: PRK00885"
/db_xref="CDD:179154"
misc_feature 66845..67150
/locus_tag="Rmag_0057"
/note="Phosphoribosylglycinamide synthetase, N domain;
Region: GARS_N; pfam02844"
/db_xref="CDD:202429"
misc_feature 67151..67732
/locus_tag="Rmag_0057"
/note="Phosphoribosylglycinamide synthetase, ATP-grasp (A)
domain; Region: GARS_A; pfam01071"
/db_xref="CDD:201585"
misc_feature 67835..68104
/locus_tag="Rmag_0057"
/note="Phosphoribosylglycinamide synthetase, C domain;
Region: GARS_C; pfam02843"
/db_xref="CDD:202428"
gene complement(68472..69230)
/locus_tag="Rmag_0058"
/db_xref="GeneID:4554819"
CDS complement(68472..69230)
/locus_tag="Rmag_0058"
/note="KEGG: neu:NE1008 hypothetical protein"
/codon_start=1
/transl_table=11
/product="periplasmic or secreted lipoprotein-like"
/protein_id="YP_903331.1"
/db_xref="GI:118602116"
/db_xref="InterPro:IPR007055"
/db_xref="GeneID:4554819"
/translation="MKKIILSISLIVNSLFLIGCAPVIQGASTVSSVISISNDRRSIG
KILDDKTIASRLLIWYSEDPTLSDVHLNFMVYNKTVLITGEVSTPEIRIYASKQAQLQ
VPNISQIFNEIKLGPSSGLISRVKDSAITIQVEFLFQNQEVFHPIHVRVMTENQVVYL
MGALTKREANMAAKTAAKAKGAYKVVKLFDYLKTRPKAEIERDKLKELEDKRKAEFEK
QQVDLETKKADLQRQIRALSSNTTATNFSPEYAF"
sig_peptide complement(69150..69230)
/locus_tag="Rmag_0058"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.972) with cleavage site probability 0.626 at
residue 27"
misc_feature complement(68652..69176)
/locus_tag="Rmag_0058"
/note="outer membrane lipoprotein; Provisional; Region:
PRK11023"
/db_xref="CDD:182907"
misc_feature complement(68880..69041)
/locus_tag="Rmag_0058"
/note="BON domain; Region: BON; cl02771"
/db_xref="CDD:207723"
gene 69598..70428
/locus_tag="Rmag_0059"
/db_xref="GeneID:4554820"
CDS 69598..70428
/locus_tag="Rmag_0059"
/note="TIGRFAM: Protein of unknown function UPF0011;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase;
KEGG: aci:ACIAD1130 putative methyltransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903332.1"
/db_xref="GI:118602117"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR008189"
/db_xref="GeneID:4554820"
/translation="MNGTLYIVATPIGNLDDITFRAIETLKIVDIILAEDTRHSKHLL
NHYDITTSMRAFHEHNEKRKTPDVINELLAGKHIALISDAGTPLISDPGYILVSEAKK
ADINVSPIPGSNAMISAISASGIASDKFSFFGFLPSKQSARLKVIRSIAHINEVAIFY
ESPKRILSCAQDLQVILGNERIVCFAKELTKLFETINTNTLPKLIDYLQADDAHQKGE
FVILISAMDKGNKISEEEILDKILPILLAEMGAAKAAKLVAKITGFDKKYCYQRAIDF
"
misc_feature 69598..70422
/locus_tag="Rmag_0059"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:30661"
misc_feature 69610..70269
/locus_tag="Rmag_0059"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(69631..69633,69847..69855,69862..69867,69937..69942,
70075..70077,70153..70155,70159..70164,70249..70257)
/locus_tag="Rmag_0059"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(69649..69660,69664..69666,69853..69870,69877..69882,
69886..69891,69922..69924,69928..69939,69943..69948,
69955..69960,69985..69999)
/locus_tag="Rmag_0059"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene 70449..70713
/locus_tag="Rmag_0060"
/pseudo
/db_xref="GeneID:4555463"
gene complement(70723..71328)
/locus_tag="Rmag_0061"
/db_xref="GeneID:4554821"
CDS complement(70723..71328)
/locus_tag="Rmag_0061"
/EC_number="2.7.1.24"
/note="KEGG: cbu:CBU_0152 dephospho-CoA kinase;
TIGRFAM: dephospho-CoA kinase;
PFAM: Dephospho-CoA kinase"
/codon_start=1
/transl_table=11
/product="dephospho-CoA kinase"
/protein_id="YP_903333.1"
/db_xref="GI:118602118"
/db_xref="InterPro:IPR001977"
/db_xref="GeneID:4554821"
/translation="MSIIKIALTGGIACGKSRVSQILSGLGVDVINLDKLARQAVKPD
TLVLKKLIKHFGNDILNADKSLDRSALRELLLESKSNQQLIETMLHPEILMRMQTEIK
KLESKLVVVEIPLLAEKNLTHLFDRIIIVGCNEEEQLKRLIARNDISLKEAKSMISTQ
INHLLRLELCNKTPIDIIENNLDIADLTQKTNQLYKKLTNL"
misc_feature complement(70726..71322)
/locus_tag="Rmag_0061"
/note="Dephospho-CoA kinase [Coenzyme metabolism]; Region:
CoaE; COG0237"
/db_xref="CDD:30586"
misc_feature complement(70771..71316)
/locus_tag="Rmag_0061"
/note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis; Region: DPCK; cd02022"
/db_xref="CDD:30195"
misc_feature complement(order(70849..70851,70984..70989,71059..71061,
71227..71229,71302..71304))
/locus_tag="Rmag_0061"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30195"
misc_feature complement(order(70789..70791,70906..70908,71281..71286,
71293..71301))
/locus_tag="Rmag_0061"
/note="ATP-binding [chemical binding]; other site"
/db_xref="CDD:30195"
gene 71406..71482
/locus_tag="Rmag_R0004"
/note="tRNA-Met2"
/db_xref="GeneID:4555577"
tRNA 71406..71482
/locus_tag="Rmag_R0004"
/product="tRNA-Met"
/db_xref="GeneID:4555577"
gene 71651..73636
/locus_tag="Rmag_0062"
/db_xref="GeneID:4554822"
CDS 71651..73636
/locus_tag="Rmag_0062"
/EC_number="2.2.1.1"
/note="KEGG: tcx:Tcr_0244 transketolase;
TIGRFAM: transketolase;
PFAM: Transketolase domain protein; Transketolase, central
region"
/codon_start=1
/transl_table=11
/product="transketolase"
/protein_id="YP_903334.1"
/db_xref="GI:118602119"
/db_xref="InterPro:IPR005474"
/db_xref="InterPro:IPR005475"
/db_xref="InterPro:IPR005476"
/db_xref="InterPro:IPR005478"
/db_xref="GeneID:4554822"
/translation="MPSRRDLANAIRALSMDAVQKANSGHPGAPMGMADIAQVLWNDH
LKYNPIHAKWADRDRFVLSNGHGSMLIYSLLHLSGYDLSMNDIKNFRQLHAKTAGHPE
YGYADGIETTTGPLGQGVTNAVGMAIAERTLGAQFNKPGHDIVDHNTYVFMGDGCLME
GLSHESCAMAGTLGLGKLIAFWDDNDISIDGHISDWMEKDAAGRFESYGWHVVRDVDG
HDADAINAAINAAKAETAKPSLICTRTTIGFGSPNLCGTHNCHGAPLGDDEIAATRKE
LGWDFAPFKIPADIYKGWDHKEKGTIDESAWDVKFAAYKAEFPADAAEFERRMSGDLP
DNFVIEMDKFIAKTQEEMPSIASRQASQRTIETMAPLLPEMFGGSADLTGSNLTNWSG
TVKVNAQNANGNYISWGVREFGMAHMMNGMVLHGAFKVYGATFFMFMEFMRNALRMSA
LMKIGTIYVYTHDSIGLGEDGPTHQPIEQLATMRMIPNFQSWRGCDAVESAVSWKMAI
LRNNAPTGLVFSRQTLTAMERTSEQVANIEKGGYILKDCEGTADIIFIATGSEVGLAV
EAAAAMDVKVRVVSMPCTNAYDDQGQAYKDSVLTPGVKRLAIEAGVGDGWYKYVGLDG
DVVCMTTFGESAPADQLFKAFGFTINNVIAKAIAVIG"
misc_feature 71651..73594
/locus_tag="Rmag_0062"
/note="transketolase; Reviewed; Region: PRK12753"
/db_xref="CDD:183723"
misc_feature 71675..72472
/locus_tag="Rmag_0062"
/note="Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK provides
a link between glycolysis and the...; Region: TPP_TK;
cd02012"
/db_xref="CDD:48175"
misc_feature order(71846..71848,71990..71992,71996..71998,72113..72118,
72128..72130,72203..72205,72209..72211,72215..72217,
72431..72433)
/locus_tag="Rmag_0062"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48175"
misc_feature order(71921..71923,71945..71950,71954..71956,71993..71998,
72002..72004,72122..72133,72140..72145,72152..72154,
72164..72166,72212..72217,72260..72262)
/locus_tag="Rmag_0062"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48175"
misc_feature 72725..73213
/locus_tag="Rmag_0062"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature order(72767..72769,72773..72775,72791..72793,72860..72862,
72869..72871,72875..72892,72899..72904,72908..72916,
72971..72973,72980..72985,73058..73060,73067..73069,
73115..73120,73184..73186)
/locus_tag="Rmag_0062"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(72791..72793,72869..72871,72878..72886,72968..72973,
72977..72979,73058..73060,73064..73066,73091..73096,
73100..73105,73109..73111)
/locus_tag="Rmag_0062"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(72878..72880,72884..72886,72962..72964,72971..72973)
/locus_tag="Rmag_0062"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature 73271..73594
/locus_tag="Rmag_0062"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene 73745..74740
/locus_tag="Rmag_0063"
/db_xref="GeneID:4554823"
CDS 73745..74740
/locus_tag="Rmag_0063"
/EC_number="1.2.1.12"
/note="TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase,
type I;
PFAM: glyceraldehyde 3-phosphate dehydrogenase;
KEGG: tbd:Tbd_0160 glyceraldehyde-3-phosphate
dehydrogenase, type I"
/codon_start=1
/transl_table=11
/product="glyceraldehyde-3-phosphate dehydrogenase"
/protein_id="YP_903335.1"
/db_xref="GI:118602120"
/db_xref="InterPro:IPR000173"
/db_xref="InterPro:IPR006424"
/db_xref="InterPro:IPR011596"
/db_xref="GeneID:4554823"
/translation="MAIKVGINGFGRIGRMVFRAIAKNFSELEVVGINDLLDNDYLAY
MLKYDTVHGRFDGDIVVDGDNFVINGKKIRLSAERNPADLAWGDIDVDVAIDCTGFFL
TEEFCQAHIDAGAKKVVQSAPSKDNTPMFVYGVNHTKYTGQAIISAASCTTNCLAPIA
KVINDNWGLKRGLMTTVHASTAAQKTVDGPSMKDWRGGRSVFENIIPSSTGAAKAVGV
VLPELNGKLTGMAFRIPSVDVSVVDLTCELNKNVTYEQICDAMKEASKSSMKGTLAYT
EDSVVSSDFRGFSASSIFDSSAGIALDDTFVKVVSWYDNEYGYTCNMLRLVEHIA"
misc_feature 73751..74194
/locus_tag="Rmag_0063"
/note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain; Region: Gp_dh_N; pfam00044"
/db_xref="CDD:200954"
misc_feature 73754..74719
/locus_tag="Rmag_0063"
/note="glyceraldehyde-3-phosphate dehydrogenase, type I;
Region: GAPDH-I; TIGR01534"
/db_xref="CDD:211668"
misc_feature 74210..74683
/locus_tag="Rmag_0063"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; pfam02800"
/db_xref="CDD:202402"
gene 74781..75117
/locus_tag="Rmag_0064"
/pseudo
/db_xref="GeneID:4555464"
gene 75162..76337
/gene="pgk"
/locus_tag="Rmag_0065"
/db_xref="GeneID:4554824"
CDS 75162..76337
/gene="pgk"
/locus_tag="Rmag_0065"
/EC_number="2.7.2.3"
/note="Converts 3-phospho-D-glycerate to
3-phospho-D-glyceroyl phosphate during the glycolysis
pathway"
/codon_start=1
/transl_table=11
/product="phosphoglycerate kinase"
/protein_id="YP_903336.1"
/db_xref="GI:118602121"
/db_xref="InterPro:IPR001576"
/db_xref="GeneID:4554824"
/translation="MSVINLLDLDLSSKRVLIRQDLNVSISNWIVTSDKRIKASLPTI
KIALKQGAKVMLMSHRGRPIEGEPSDEFSLQPVADRLSELLNTTVRLEKDWLNGVQMN
NGEVVLCENVRFNAGEMANDDNLSKRMALMCDIFVMDAFGTAHRAQASTHGVAKYAPI
ACSGPLLSGELDALGKVLDNPKRPMVAIVGGSKVSTKLTVLESLSKIVDQLVVGGGIA
NTFIAAQGFNVGKSLCEHDLIPMAKKLMEDCEIPVPTDVVCGKEFSETAEAQTKASTE
VSDDDMIFDIGPESIKQLAKIMENAGTIVWNGPVGVFEFEQFASGTKTLGKAIAESDA
FSIAGGGDTLAAVDKYGIEDKINYISTGGGAFLEFLEGKILPAVEILEQRASGVDFA"
misc_feature 75177..76310
/gene="pgk"
/locus_tag="Rmag_0065"
/note="Phosphoglycerate kinase (PGK) is a monomeric enzyme
which catalyzes the transfer of the high-energy phosphate
group of 1,3-bisphosphoglycerate to ADP, forming ATP and
3-phosphoglycerate. This reaction represents the first of
the two substrate-level...; Region:
Phosphoglycerate_kinase; cd00318"
/db_xref="CDD:29400"
misc_feature 75183..76280
/gene="pgk"
/locus_tag="Rmag_0065"
/note="Phosphoglycerate kinase; Region: PGK; pfam00162"
/db_xref="CDD:201047"
misc_feature order(75222..75224,75228..75230,75267..75269,75336..75338,
75498..75500)
/gene="pgk"
/locus_tag="Rmag_0065"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29400"
misc_feature order(75693..75704,76236..76244)
/gene="pgk"
/locus_tag="Rmag_0065"
/note="hinge regions; other site"
/db_xref="CDD:29400"
misc_feature order(75807..75809,76008..76010,76080..76082,76086..76088,
76092..76103,76182..76190)
/gene="pgk"
/locus_tag="Rmag_0065"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:29400"
misc_feature 76185..76187
/gene="pgk"
/locus_tag="Rmag_0065"
/note="catalytic site [active]"
/db_xref="CDD:29400"
gene 76330..77772
/locus_tag="Rmag_0066"
/db_xref="GeneID:4554825"
CDS 76330..77772
/locus_tag="Rmag_0066"
/EC_number="2.7.1.40"
/note="PFAM: pyruvate kinase;
KEGG: vpa:VP2039 pyruvate kinase II"
/codon_start=1
/transl_table=11
/product="pyruvate kinase"
/protein_id="YP_903337.1"
/db_xref="GI:118602122"
/db_xref="InterPro:IPR001697"
/db_xref="GeneID:4554825"
/translation="MPRRTKILATLGPATDKEGVLDSILEAGVNVVRINFSHGSKQEH
LNRVKAVRAWAQVNQTYVGVLMDLQGPKIRITTFKDGMKIQLNNGDIFALDADLDENS
GNQYSVGIVYKKLPQEVRVGNVLLLDDGKIVLEVIGIKGNKINTIVTQGGILSDKKGI
NLRGGGLSANALTEKDKKDILIAAKAKADYVALSFPISGDDVRKTKQLLKQMGCDAGV
ISKIERAESLVESVILDIIKESAGIMVARGDLGVEIGDAQLPAQQKRLIKLARSNNRI
VITATQMLESMITSPIPTRAEVFDVANAVLDGTDAVMLSAETAVGNFPENAVKTMHDV
CIETEKNPIAKISHHRLDETFTYIDETIAMSAMYAANHMGTRVIVTLTESGKTAIWMS
RISSGIPIVAMSDKVSTLQKATLYRGVHPCFLSTKKDWIEINKAVIKRLQVGNFVYDG
DSVILTKGMYKNKSGGTNLMKILTVGDSEY"
misc_feature 76330..77727
/locus_tag="Rmag_0066"
/note="pyruvate kinase; Provisional; Region: PRK05826"
/db_xref="CDD:180277"
misc_feature 76336..77754
/locus_tag="Rmag_0066"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
misc_feature order(76339..76344,76510..76512,76516..76518,76540..76551,
76807..76812,76828..76830,76837..76851,76894..76896,
76918..76920,76939..76941,76972..76974,77086..77088,
77140..77145,77155..77157,77251..77253,77257..77259,
77344..77346,77350..77355,77506..77508,77512..77514,
77518..77520,77551..77553,77560..77565,77569..77571,
77575..77583)
/locus_tag="Rmag_0066"
/note="domain interfaces; other site"
/db_xref="CDD:29370"
misc_feature order(76426..76428,76432..76434,76528..76530,76912..76914,
76990..76992,76996..76998,77074..77076,77170..77172)
/locus_tag="Rmag_0066"
/note="active site"
/db_xref="CDD:29370"
gene 77856..78917
/locus_tag="Rmag_0067"
/db_xref="GeneID:4554826"
CDS 77856..78917
/locus_tag="Rmag_0067"
/EC_number="4.1.2.13"
/note="KEGG: noc:Noc_2804 fructose-bisphosphate aldolase,
class II, calvin cycle subtype;
TIGRFAM: ketose-bisphosphate aldolases;
fructose-bisphosphate aldolase, class II, Calvin cycle
subtype;
PFAM: ketose-bisphosphate aldolase, class-II"
/codon_start=1
/transl_table=11
/product="fructose-bisphosphate aldolase"
/protein_id="YP_903338.1"
/db_xref="GI:118602123"
/db_xref="InterPro:IPR000771"
/db_xref="InterPro:IPR006412"
/db_xref="GeneID:4554826"
/translation="MLISLRELLDHAAENDYGMPAFNVNNMEQVHAIMRAADKTNSPV
IMQGSAGARGYAGEPFLRHLILAATEMYPHIPVVMHQDHGSEPSVCLRSIQSGFSSVM
MDGSLKTDMKTPASFEYNVNVTAEVVKMAHAGGVSVEGELGCLGSLETGMMGEEDGHG
AESKLDLDMLLTSVEEAADFVKATNVDALAIAIGTSHGAYKFTQEPTGDVLRIDRIKE
IYTRIPDTHLVMHGSSSVPQDWLKIINDFGGDMGQTYGVPVEEIQEGIKHGVRKVNID
TDLRMASTGAVRRYLVENASNFDPRKFLKEATNAMSDICAARFEAFGSAGNADKITVS
SLDTMSQRYLSGELDVQVK"
misc_feature 77868..78845
/locus_tag="Rmag_0067"
/note="hypothetical protein; Provisional; Region:
PRK08185"
/db_xref="CDD:181275"
misc_feature 77868..78833
/locus_tag="Rmag_0067"
/note="Tagatose-1,6-bisphosphate (TBP) aldolase and
related Type B Class II aldolases. TBP aldolase is a
tetrameric class II aldolase that catalyzes the reversible
condensation of dihydroxyacetone phosphate with
glyceraldehyde 3-phsophate to produce tagatose 1; Region:
TBP_aldolase_IIB; cd00947"
/db_xref="CDD:29573"
misc_feature order(77931..77939,77946..77948,78006..78008,78015..78023,
78033..78035,78045..78047,78054..78059,78321..78323,
78684..78689,78693..78698,78705..78707,78717..78719,
78726..78728)
/locus_tag="Rmag_0067"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29573"
misc_feature order(78099..78104,78441..78449,78453..78455,78546..78551,
78555..78557,78675..78677,78681..78686)
/locus_tag="Rmag_0067"
/note="active site"
/db_xref="CDD:29573"
misc_feature order(78102..78104,78444..78446,78546..78548)
/locus_tag="Rmag_0067"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29573"
misc_feature order(78441..78443,78447..78449,78453..78455,78549..78551,
78555..78557)
/locus_tag="Rmag_0067"
/note="Na+ binding site [ion binding]; other site"
/db_xref="CDD:29573"
gene 78981..80855
/locus_tag="Rmag_0068"
/gene_synonym="gidA"
/db_xref="GeneID:4554827"
CDS 78981..80855
/locus_tag="Rmag_0068"
/gene_synonym="gidA"
/note="GidA; glucose-inhibited cell division protein A;
involved in the 5-carboxymethylaminomethyl modification
(mnm(5)s(2)U) of the wobble uridine base in some tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA"
/protein_id="YP_903339.1"
/db_xref="GI:118602124"
/db_xref="InterPro:IPR002218"
/db_xref="InterPro:IPR004416"
/db_xref="GeneID:4554827"
/translation="MNMGQAKSYSVIVIGGGHAGTEAALSSARMGVCTLLISHNIETL
GQMSCNPAIGGIGKGHLVKEIDAMGGIMARAIDKSGIQFRTLNASKGPAVRATRAQAD
RILYKAQIRYTLENQDNLSLFQQAVDDLIIEHDQIKGVVTQMGLAFMADKVILTSGTF
LGGVIHIGQRNFQGGRAGDAPSNALSGKLRSYDLRVSRLKTGTPPRLDNRTLNYSLMQ
VQPGDTPLPTFSFMGVKEDHPRQIPCYITHTNEKTHDLIRDGLKDSPMFTGNIEGISP
RYCPSIEDKVVRFSERDSHQIFVEPEGLTTNEVYPNGVSTSLSYEVQLNFIRSIKGFE
KAHIIRPGYAIEYDFFDPRGLKQTLEVKKISGLYFAGQINGTTGYEEAAAQGLLAGVN
AACAILERDAWLPKRNESYIGVMVDDLITKGANEPYRMFTSRAEYRLLLREDNADERL
TPKARDLGLISEVCWQSFQVKYEAITQEKNRLKNTWIQASDTQAGVVLNQNLNHEYSL
LELLKRPKIDYQILSQIESGKPFLTDATLINSIENQIKYAGYIKRQLEEIEKYRKNEN
TILSVNIDYDSIKALSSEVRQKLELHKPETIGQASRIQGVTPASISILLVYLKTYQSK
"
misc_feature 78996..80852
/locus_tag="Rmag_0068"
/gene_synonym="gidA"
/note="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated; Region: PRK05192"
/db_xref="CDD:179960"
misc_feature 79011..>79370
/locus_tag="Rmag_0068"
/gene_synonym="gidA"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature <79926..80228
/locus_tag="Rmag_0068"
/gene_synonym="gidA"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 80613..80828
/locus_tag="Rmag_0068"
/gene_synonym="gidA"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene 80891..81463
/locus_tag="Rmag_0069"
/db_xref="GeneID:4554692"
CDS 80891..81463
/locus_tag="Rmag_0069"
/note="TIGRFAM: methyltransferase GidB;
PFAM: glucose inhibited division protein;
KEGG: mfa:Mfla_2754 methyltransferase GidB"
/codon_start=1
/transl_table=11
/product="methyltransferase GidB"
/protein_id="YP_903340.1"
/db_xref="GI:118602125"
/db_xref="InterPro:IPR003682"
/db_xref="GeneID:4554692"
/translation="MNIKLESEQISKLMNYLKLIIKWNKSYNLSAIRTMEKGVYKHLL
DSLSVIAYIKDKSLLDVGSGAGLPGIVISIMRPELLVTVLDTVGKKCRFMQFAKTQLQ
LKNLNVIKNRVENYQIEFCFEQIISRAFSKVEKILKLTQHLLCNNGEYLLMKGAGFQQ
ETLPYGVDIQSLCVPEILGKRYLLIFRREK"
misc_feature 80924..81457
/locus_tag="Rmag_0069"
/note="16S rRNA methyltransferase GidB; Reviewed; Region:
gidB; PRK00107"
/db_xref="CDD:178868"
gene 81460..82260
/locus_tag="Rmag_0070"
/db_xref="GeneID:4554693"
CDS 81460..82260
/locus_tag="Rmag_0070"
/note="KEGG: sde:Sde_1913 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903341.1"
/db_xref="GI:118602126"
/db_xref="GeneID:4554693"
/translation="MKKIGYFLIGLIVILALIVTVAFDPMGKKYAQQYAQNLLKIPVT
ISQFSTSFLDKRLNIDFIKVKNPPNFNNKYAFSLDHFVLKISDESISDLIVIDELSFD
GISFVLEQNKTNVNLVTLIDNLDKTSSGTTFSLSEEIQNIGNKRIKINQFYVTNITLK
IDTKWLKETIKVPNINLQKFGGGSGIALSQVGQELMTVVLKNIKDALEKKGIELGKKE
IKETLMHKLRVDSIKEKFNLDKIKDSLNFSGTEELQNKAKDLFKQLGF"
sig_peptide 81460..81528
/locus_tag="Rmag_0070"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.853) with cleavage site probability 0.709 at
residue 23"
gene 82267..83037
/locus_tag="Rmag_0071"
/db_xref="GeneID:4554694"
CDS 82267..83037
/locus_tag="Rmag_0071"
/note="TIGRFAM: hydrolase, TatD family;
PFAM: TatD-related deoxyribonuclease;
KEGG: rso:RSc1787 putative deoxyribonuclease"
/codon_start=1
/transl_table=11
/product="TatD family hydrolase"
/protein_id="YP_903342.1"
/db_xref="GI:118602127"
/db_xref="InterPro:IPR001130"
/db_xref="GeneID:4554694"
/translation="MQIVDSHCHIDRIDLSAFGGNVERMLAHAKELSVTQFLCVCIDL
EHFDEVFSLAKNYPQIYASVGVHPCELEGKDPSVKELLVLAEHDKIIAIGETGLDYFH
VEKIAADWQRDRFRRHIKASNQSGKPMIIHTRNAKKDTIAIMQTEKAEQGVMHCFSEN
WETAKVVLDLGFYISFSGVITFKSAKDLREVAKKVPSDRLLVETDSPYLTPVPYRGKP
NSPAYSYYVAEKLAEIRGVSINNIANTTTNNFKQLFLA"
misc_feature 82273..83028
/locus_tag="Rmag_0071"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:30053"
misc_feature order(82285..82287,82291..82293,82660..82662,82729..82731,
82879..82881)
/locus_tag="Rmag_0071"
/note="active site"
/db_xref="CDD:30053"
gene 83034..83945
/locus_tag="Rmag_0072"
/db_xref="GeneID:4554695"
CDS 83034..83945
/locus_tag="Rmag_0072"
/EC_number="5.4.99.-"
/note="TIGRFAM: pseudouridine synthase, RluA family;
PFAM: RNA-binding S4 domain protein; pseudouridine
synthase;
KEGG: pmu:PM0992 ribosomal large subunit pseudouridine
synthase C"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
C"
/protein_id="YP_903343.1"
/db_xref="GI:118602128"
/db_xref="InterPro:IPR002942"
/db_xref="InterPro:IPR006145"
/db_xref="InterPro:IPR006224"
/db_xref="InterPro:IPR006225"
/db_xref="GeneID:4554695"
/translation="MSISFQIVDEFSEGQRLDNYLLKILKGVPKSHICRVIRKGWVRV
NKGRKKVSYKLILNDIVRIPPIKVSIIKSIYISDSLKKLLIDAKLYEDKGLLIINKPS
GLSVHSGSGVDVGIIEALRQIYKKPIELVHRLDRATSGVLLIAKKRSVLKNLHEQLSQ
HTVEKRYTALVKGVWSKKCHTIDAPLYQNSRYIMVDAKGKYAISHFQPLKNFSDGGFS
ASLVEISIETGRTHQIRVHAKYAGHALACDDKYGDKEFDRQVKFKGLKRLFLHAHQFI
FTNPLTNDIQKVNASLPVELEEFLAKL"
misc_feature 83037..83942
/locus_tag="Rmag_0072"
/note="23S rRNA pseudouridylate synthase C; Provisional;
Region: PRK11025"
/db_xref="CDD:182909"
misc_feature 83076..83210
/locus_tag="Rmag_0072"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cl09940"
/db_xref="CDD:209103"
misc_feature 83316..83864
/locus_tag="Rmag_0072"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(83427..83438,83736..83738)
/locus_tag="Rmag_0072"
/note="active site"
/db_xref="CDD:211346"
gene 83993..84814
/locus_tag="Rmag_0073"
/db_xref="GeneID:4554696"
CDS 83993..84814
/locus_tag="Rmag_0073"
/EC_number="2.5.1.-"
/note="TIGRFAM: 4-hydroxybenzoate polyprenyl transferase;
PFAM: UbiA prenyltransferase;
KEGG: vch:VC0094 4-hydroxybenzoate octaprenyltransferase"
/codon_start=1
/transl_table=11
/product="4-hydroxybenzoate octaprenyltransferase"
/protein_id="YP_903344.1"
/db_xref="GI:118602129"
/db_xref="InterPro:IPR000537"
/db_xref="InterPro:IPR006370"
/db_xref="GeneID:4554696"
/translation="MRLDKPIGIYLLLWPTLWALFLAAEGVPDLKLLLIFVLGVILMR
SAGCVINDYADRHVDKLIKRTKQRPITSGEINHKSALKLFVLLIMLAFILVLLTNWLT
IQLAMIAALLAILYPFTKRWTHFPQFVLGLAFAMSVPMAFSATLNTIPTTALYVFAAT
VIWTVIYDTMYAMADREEDLKIGVKSTAILFAKFDRLIIGIFQIGLLLILIKISDVFN
LTILYDISLALVALLMIYHQYFIRHRKKSACFQIFLHNKYIGVVIFAGIALSVVL"
misc_feature 83993..84802
/locus_tag="Rmag_0073"
/note="UbiA prenyltransferase family; Region: UbiA;
cl00337"
/db_xref="CDD:206994"
gene complement(85474..86289)
/gene="dapD"
/locus_tag="Rmag_0074"
/db_xref="GeneID:4554697"
CDS complement(85474..86289)
/gene="dapD"
/locus_tag="Rmag_0074"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_903345.1"
/db_xref="GI:118602130"
/db_xref="InterPro:IPR001451"
/db_xref="InterPro:IPR005664"
/db_xref="GeneID:4554697"
/translation="MKDIIEQAFEDRVNINPQSASMEIKQAVAEAIHFLDSGQARVAE
QKGVGDWVVNEWLKKAVLLSFRLEDNVVMQGGFTQYFDKVSSKFADMSADEFNATGVR
VVPPASARRGSFIAKDTVLMPSYINIGAYVDSGTMVDTWATVGSCAQIGKNVHLSGGA
GIGGVLEPLQASPTIIEDNCFIGARSEVVEGVIVEQGAVISMGVYIGQSTKIFNRKTK
EITYGRIPAGSVVVPGNLPSKDGAYSLYCAVIVKQVNTKTRSKVGINELLRGI"
misc_feature complement(85483..86289)
/gene="dapD"
/locus_tag="Rmag_0074"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature complement(85579..85992)
/gene="dapD"
/locus_tag="Rmag_0074"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature complement(order(85579..85581,85585..85596,85675..85677,
85729..85731,85735..85737,85813..85815,85861..85869,
85915..85917,85921..85923,85969..85974,85981..85986))
/gene="dapD"
/locus_tag="Rmag_0074"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature complement(order(85684..85689,85720..85722,85735..85743,
85780..85782,85789..85794,85798..85800,85819..85821,
85825..85827,85852..85854,85873..85875,85909..85911,
85924..85926,85960..85962,85984..85986))
/gene="dapD"
/locus_tag="Rmag_0074"
/note="active site"
/db_xref="CDD:100041"
misc_feature complement(order(85792..85794,85852..85854,85873..85875,
85909..85911,85924..85926,85960..85962,85984..85986))
/gene="dapD"
/locus_tag="Rmag_0074"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature complement(order(85684..85689,85720..85722,85735..85743,
85780..85782,85798..85800,85816..85821))
/gene="dapD"
/locus_tag="Rmag_0074"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene 86449..87843
/locus_tag="Rmag_0075"
/db_xref="GeneID:4554698"
CDS 86449..87843
/locus_tag="Rmag_0075"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: tcx:Tcr_1962 4Fe-4S ferredoxin, iron-sulfur binding"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin iron-sulfur binding
domain-containing protein"
/protein_id="YP_903346.1"
/db_xref="GI:118602131"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4554698"
/translation="MTDKKIQVEGLYEEGEQWVQNLGDETIHAKRMKGKFRNFKWLAI
IGWLPFFVGPYFTWNDKQAILFDIDKRQYHLFNITIFPQDIWMLTMVLLFLAILLAVM
TTILGRVFCGYFCFQTIWTDIFTKIEQWIEGTPVQQRKLDKAPMSVNKFKLKLAKHAI
WIVIAFFSGITWMLYFGVSWADYFKGDVTSTTIAITAIIALGAYVFAGFMREQTCLWI
CPYARIQGAMVDDQSILPTYDHYRGEQRGRLKRGEFVEGFGDCIDCHQCVAVCPTGVD
IRKGQEYGCITCGLCIDACDSVMKKVGKPKGLIRYTSLAEMKFNKPIKALYKRPRVVI
YMSILLVALSVLTCGILNLDQMDLKVLHDRQPLFVQLSDGSIRNKYKLKIMNKTDKVM
PINISFSSKIENLKSKKAFKTVMIPSGNIKSIYVYLTAFESDVGADNDVVFMVKSEQA
TLEYKTSFFTSKSM"
misc_feature 86554..87825
/locus_tag="Rmag_0075"
/note="cytochrome c oxidase accessory protein FixG;
Region: ccoG_rdxA_fixG; TIGR02745"
/db_xref="CDD:162996"
misc_feature 86710..86853
/locus_tag="Rmag_0075"
/note="4Fe-4S binding domain; Region: Fer4_5; pfam12801"
/db_xref="CDD:205081"
misc_feature <87172..>87333
/locus_tag="Rmag_0075"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature 87484..87828
/locus_tag="Rmag_0075"
/note="Ubp3 associated protein Bre5; Region: Bre5;
pfam11614"
/db_xref="CDD:204690"
gene 87843..88322
/locus_tag="Rmag_0076"
/db_xref="GeneID:4554699"
CDS 87843..88322
/locus_tag="Rmag_0076"
/note="KEGG: tcx:Tcr_1961 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903347.1"
/db_xref="GI:118602132"
/db_xref="GeneID:4554699"
/translation="MSIYKSPIMISMLVLFITLVSATAYRIMIALETHPGLVVEDAYS
SGKRYVKTLNHKNQLARLGWILNLATPKVVIHNIKQTYTANSAQNDKTLANAFVTAYF
YRPLEKAHDFSINMAFNQEINQYQAQVTLPLKGRWDVVVEVVKRGFVQRTSRKLFAQ"
sig_peptide 87843..87911
/locus_tag="Rmag_0076"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.975) with cleavage site probability 0.617 at
residue 23"
misc_feature 87876..88313
/locus_tag="Rmag_0076"
/note="FixH; Region: FixH; pfam05751"
/db_xref="CDD:147738"
gene complement(90190..90891)
/locus_tag="Rmag_0077"
/db_xref="GeneID:4554700"
CDS complement(90190..90891)
/locus_tag="Rmag_0077"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: vfi:VF0829 high-affinity zinc uptake system
ATP-binding protein ZnuC"
/codon_start=1
/transl_table=11
/product="ABC transporter related"
/protein_id="YP_903348.1"
/db_xref="GI:118602133"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4554700"
/translation="MSEVLISANHVSFSHHGKKVLDDVSFELRTGEFITLIGPNGAGK
SSLIKILLELIAPDDGKIKKSKYIRLGYTPQKFIPNEFIPISVIDFLKLNQKINTQSL
INTTTLTGIETLLHLSLKNLSGGEIQRVLLTRAFLAKPNVLILDEPVQNLDVNGQMHL
YKLIQDIHNQQNCAVLMVSHDLHRVMKESTQVLCLYHHICCMGQPETILKNAQFNHLF
ADQMDELMATYKHKH"
misc_feature complement(90193..90879)
/locus_tag="Rmag_0077"
/note="high-affinity zinc transporter ATPase; Reviewed;
Region: znuC; PRK09544"
/db_xref="CDD:181939"
misc_feature complement(90283..90873)
/locus_tag="Rmag_0077"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(90757..90780)
/locus_tag="Rmag_0077"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(90352..90354,90451..90456,90667..90669,
90754..90762,90766..90771))
/locus_tag="Rmag_0077"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(90667..90678)
/locus_tag="Rmag_0077"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(90499..90528)
/locus_tag="Rmag_0077"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(90451..90468)
/locus_tag="Rmag_0077"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(90433..90444)
/locus_tag="Rmag_0077"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(90346..90366)
/locus_tag="Rmag_0077"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 90999..93719
/locus_tag="Rmag_0078"
/db_xref="GeneID:4554701"
CDS 90999..93719
/locus_tag="Rmag_0078"
/EC_number="2.7.7.7"
/note="KEGG: hch:HCH_06350 DNA polymerase I;
TIGRFAM: DNA polymerase I;
PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease;
3'-5' exonuclease;
SMART: Helix-hairpin-helix domain protein, class 2"
/codon_start=1
/transl_table=11
/product="DNA polymerase I"
/protein_id="YP_903349.1"
/db_xref="GI:118602134"
/db_xref="InterPro:IPR000513"
/db_xref="InterPro:IPR000577"
/db_xref="InterPro:IPR001098"
/db_xref="InterPro:IPR002298"
/db_xref="InterPro:IPR002421"
/db_xref="InterPro:IPR002562"
/db_xref="InterPro:IPR008918"
/db_xref="GeneID:4554701"
/translation="MSHKLILMDGSAFLFRAYFSTLKQNLTNQDGFPTGAIFGVISAI
KRLQKQYPEAKIITIFDAKGKNFRHDIYPQYKAHRKPADSELVVQIEPLYEIIRAMGL
HFMCVPDVEADDVIATLSCYANQNNIKTIIASGDKDLMQLVSANISQLDMKGTVYDRQ
GVIEKMGVAPEIFLDLLALTGDSADNVPGVPSVGPKTAIKWLQTYNDIAGIKENATQI
KGKVGEKLRNNFYLLDLSRRLVMLKFDVALPCNISDDESEQDVVKLADLYQQYGFSMW
LKQLDNMPMLEQEGIQATEVTESTSNMVDVLEDYSQTLVLDSDVFNAMVNRLKTSKTF
VFDLETTSLDYMNATIVGWVFLVDKNSFYVPVGHDYLNAPKQLDFKDVLDQLKLILED
VSIGKVGQNLKYDAHILANYQIDLQGISDDTMVKSYCLNSVATRHNIDDLSEYYLNHK
TIHFDDIAGKGKKQITFNQVDLETAFPYACEYVIVTDLLNHVLDEEIVQYPKLVKLYQ
NLELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMKDIQAQVFELAGDIFNLESPKQ
IQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLLDHPLVDLILSYRTLTKLNSTYLEA
LPKQIDLNTHRLHTSYHQAVTVTGRLSSSNPNLQNIPIRSKQGARIRGAFVAGKDNVI
IAADYSQIELRIMAQLSQDKNLLDAFNHDKDVHSVTASTMFNMPINEVTKKHRRRSKA
INFGLIYGMSAFGLTKQIDVSIIEAKQYIDTYFDNYPGVLHYMDSIKESAKVWGYVET
VMGRRLYLPQINSKNKILQQHALRTAINAPMQGSSADIIKKSMLDIHAWIGENNPDIR
MIMQVHDELVFEVSESKADEFAHKIQGLMANVYLLDIPLKVNVGIGTSWQ"
misc_feature 91008..93713
/locus_tag="Rmag_0078"
/note="DNA polymerase I; Provisional; Region: PRK05755"
/db_xref="CDD:180237"
misc_feature 91011..91490
/locus_tag="Rmag_0078"
/note="PIN domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: PIN_53EXO; cd09859"
/db_xref="CDD:189029"
misc_feature order(91023..91025,91179..91181,91329..91331,91335..91340,
91404..91406,91410..91412)
/locus_tag="Rmag_0078"
/note="active site"
/db_xref="CDD:189029"
misc_feature order(91023..91025,91335..91337,91404..91406)
/locus_tag="Rmag_0078"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 91197..91235
/locus_tag="Rmag_0078"
/note="putative 5' ssDNA interaction site; other site"
/db_xref="CDD:189029"
misc_feature order(91329..91331,91338..91340)
/locus_tag="Rmag_0078"
/note="metal binding site 3; metal-binding site"
/db_xref="CDD:189029"
misc_feature order(91404..91406,91410..91412)
/locus_tag="Rmag_0078"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 91506..91724
/locus_tag="Rmag_0078"
/note="H3TH domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: H3TH_53EXO; cd09898"
/db_xref="CDD:188618"
misc_feature order(91536..91559,91563..91592,91596..91607)
/locus_tag="Rmag_0078"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:188618"
misc_feature order(91542..91544,91551..91553)
/locus_tag="Rmag_0078"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:188618"
misc_feature 91977..92552
/locus_tag="Rmag_0078"
/note="DEDDy 3'-5' exonuclease domain of Escherichia coli
DNA polymerase I and similar bacterial family-A DNA
polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139"
/db_xref="CDD:176651"
misc_feature order(92007..92018,92025..92027,92196..92201,92205..92213,
92310..92315,92358..92363,92430..92432,92442..92444)
/locus_tag="Rmag_0078"
/note="active site"
/db_xref="CDD:176651"
misc_feature order(92007..92009,92013..92015,92211..92213,92430..92432,
92442..92444)
/locus_tag="Rmag_0078"
/note="catalytic site [active]"
/db_xref="CDD:176651"
misc_feature order(92010..92018,92025..92027,92196..92201,92205..92210,
92310..92315,92358..92363,92430..92432,92442..92444)
/locus_tag="Rmag_0078"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176651"
misc_feature 92583..93713
/locus_tag="Rmag_0078"
/note="Polymerase I functions primarily to fill DNA gaps
that arise during DNA repair, recombination and
replication; Region: DNA_pol_A_pol_I_C; cd08637"
/db_xref="CDD:176474"
misc_feature order(92832..92834,92844..92846,92853..92858,92931..92939,
92943..92945,92949..92960,93054..93059,93141..93143,
93201..93203,93213..93215,93465..93467,93486..93488,
93579..93587)
/locus_tag="Rmag_0078"
/note="active site"
/db_xref="CDD:176474"
misc_feature order(92832..92834,92844..92846,92853..92858,92931..92939,
92943..92945,92949..92960,93237..93239,93462..93467,
93474..93476,93486..93488,93579..93587)
/locus_tag="Rmag_0078"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176474"
misc_feature order(93054..93059,93063..93065,93141..93143,93201..93203,
93213..93215,93585..93587)
/locus_tag="Rmag_0078"
/note="catalytic site [active]"
/db_xref="CDD:176474"
gene 93735..95438
/gene="argS"
/locus_tag="Rmag_0079"
/db_xref="GeneID:4554702"
CDS 93735..95438
/gene="argS"
/locus_tag="Rmag_0079"
/EC_number="6.1.1.19"
/note="catalyzes a two-step reaction, first charging an
arginine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA
synthetase"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_903350.1"
/db_xref="GI:118602135"
/db_xref="InterPro:IPR001278"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR005148"
/db_xref="InterPro:IPR008909"
/db_xref="GeneID:4554702"
/translation="MKEQLQKILKQSLNLLENEGVLESAPENIRIDHTKDKTQGDFAS
NIAMVLAKRSGLIPKVLAQKIIDNLGDNTQIDKVQIADPGFINFFISQGESVQIIEQI
INQAEHYGKADVGKGQRILLEFVSANPTGPLHVGHGRVAAYGATVASLLRAVGFEVDN
EYYVNDAGRQMDILAISVYLRYVETEQFPDNGYKGDYIFDIAKKISGVKKLDIFISQR
SVKKNAGNKEKHIDRLIANCKFQLGHDYKKILDLAINNILSGIKIDLVEFGVKYQQWF
SEQSLMDSGLSKEIVKKLQDSGYIYEKEGALWFKTTDFGDDLDRVVVRKNGKYTYFAS
DIAYHLEKFERGYDKIINIWGVDHHGYIARIKASIKALNHNSNKLEILLVQFVNLFRN
GKKASMSTRSGSFITLEELREEVGNDAARFFYILSKSGQHMNFDLDLAKSKSNENPVF
YIQYAHARICSVLKQAKSPSMVDIDLSVLNNESEALLIKELNRYKDILQSSALNYEPH
VLACYLRELAGHFHSYYNNSKFLVDDDKLRNARLFLIIAVKQILVNGLNLLGVSAPDS
M"
misc_feature 93735..95435
/gene="argS"
/locus_tag="Rmag_0079"
/note="arginyl-tRNA synthetase; Reviewed; Region: argS;
PRK01611"
/db_xref="CDD:179308"
misc_feature 93741..94004
/gene="argS"
/locus_tag="Rmag_0079"
/note="Arginyl tRNA synthetase N terminal dom; Region:
Arg_tRNA_synt_N; smart01016"
/db_xref="CDD:198084"
misc_feature 94089..94943
/gene="argS"
/locus_tag="Rmag_0079"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature order(94101..94103,94110..94112,94116..94118,94134..94136,
94143..94145,94635..94637,94737..94739,94806..94808,
94815..94817)
/gene="argS"
/locus_tag="Rmag_0079"
/note="active site"
/db_xref="CDD:185675"
misc_feature 94134..94145
/gene="argS"
/locus_tag="Rmag_0079"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature 94926..94937
/gene="argS"
/locus_tag="Rmag_0079"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature 94971..95435
/gene="argS"
/locus_tag="Rmag_0079"
/note="Anticodon-binding domain of arginyl tRNA
synthetases; Region: Anticodon_Ia_Arg; cd07956"
/db_xref="CDD:153410"
misc_feature order(95061..95069,95073..95075,95085..95087,95094..95096,
95103..95108,95115..95120,95127..95129,95241..95243,
95268..95270,95289..95291,95301..95303,95307..95309,
95367..95369)
/gene="argS"
/locus_tag="Rmag_0079"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153410"
misc_feature order(95094..95096,95103..95108,95115..95120,95127..95129,
95307..95309,95316..95327,95367..95369,95430..95435)
/gene="argS"
/locus_tag="Rmag_0079"
/note="anticodon binding site; other site"
/db_xref="CDD:153410"
gene 95435..98596
/locus_tag="Rmag_0080"
/db_xref="GeneID:4554703"
CDS 95435..98596
/locus_tag="Rmag_0080"
/note="PFAM: UvrD/REP helicase;
KEGG: cbu:CBU_1230 UvrD/REP helicase family protein"
/codon_start=1
/transl_table=11
/product="UvrD/REP helicase"
/protein_id="YP_903351.1"
/db_xref="GI:118602136"
/db_xref="InterPro:IPR000212"
/db_xref="GeneID:4554703"
/translation="MNDQTQRRQALDVSQSFIVQAPAGSGKTELLTQRYLKLLSVSAS
PESVIAMTFTKKAVSELTTRVIESLKLAQGNRPKESYKQTTYDLALKVLEKSKTLDWQ
LLNMYERFKILTIDGLSGLIASRYPSKNQLVPKQIIAQNCVRNDIYLKAAKQTLLAID
ESEYQNSIESVLLYLDNNVNKFYRLIIDMLAKRDQWLLKLYQHGVLNIETLRLSSKKI
IIQHLLLLKNEVERYFNVTFFKLLKDNTKPEFAQIQGVPDATVESLEVWKNLCQLCLT
TQGKWRTSLNKNNGFPVELKTQKQAVIKIFQDLSSHQQLRKLLAGVEQLPDVNFSTNQ
INILQDIAQVLKLAVIQLNILFDVNQTYDFIQVALDANQALDEHQVGDVALFLDNKVQ
HILIDEFQDTSATQFVLLEKLIINWQVGDGKTLFLVGDPMQSIYLFRQSQVGLFLQVR
VQGIANIKPKFLQLSTNFRSSESVVEGNNKIFSKIFPQQEDAFKGAIKYEHSQANFVD
ENENAIRFYPFAYKRYDFEAQKVLEIIQNNPTKEIVILVRSRSHLDDIVSILKRANIE
FEALKILPLKEDLFTRDLLSLTRALKHLGDKLAWLAILRAPWCGLLLEDLLVLSQQDE
RVIFDLIQDEQVLQGLSENGQLRIRNFVHVFCDIVNQQSRFSFTKVLAFAINQLAPQS
SLSVKRSMIKIQFLQIIHDCESVQQLDIETINQMLDGLYAPSVNARIKLMTIHEAKGL
EFELVIIPGLGRMPQNNIPSIIHLQEFSNQSLLLAPIRSYTQLDDSHTYTYLKHIKSQ
QNKFETMRLLYVAMTRAKLEIHLLGTLNQSNQASSNTFLKLLAPIFQHQFDKLKLSTT
EDNQPLVQAPEFVRYIKPLEYDNLPDESKKKMDFQLSVDLQYKSLLGTLLHQYYEDSL
FSPDKQSIRARLMECGVGNMDIDSHINFIVNMLNLTKQDKHFSWLFKQRTSTQVEVEF
INDKHSVIIDRLFIDEDTLWIIDFKTATKSNNESIAQFIQRQKIKYTQQLLSYKVALS
EYYSMEIKCALYCSSVQELIEIY"
misc_feature 95444..98560
/locus_tag="Rmag_0080"
/note="ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair]; Region: RecB;
COG1074"
/db_xref="CDD:31272"
misc_feature 95483..>95629
/locus_tag="Rmag_0080"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature 98138..98548
/locus_tag="Rmag_0080"
/note="CRISPR/Cas system-associated protein Cas4; Region:
Cas4_I-A_I-B_I-C_I-D_II-B; cl00641"
/db_xref="CDD:207146"
gene complement(98697..99130)
/locus_tag="Rmag_0081"
/pseudo
/db_xref="GeneID:4555465"
gene complement(99327..99908)
/locus_tag="Rmag_0082"
/db_xref="GeneID:4554704"
CDS complement(99327..99908)
/locus_tag="Rmag_0082"
/EC_number="2.5.1.3"
/note="PFAM: thiamine monophosphate synthase;
KEGG: cvi:CV0150 probable thiamine-phosphate
diphosphorylase"
/codon_start=1
/transl_table=11
/product="thiamine-phosphate diphosphorylase"
/protein_id="YP_903352.1"
/db_xref="GI:118602137"
/db_xref="InterPro:IPR003733"
/db_xref="GeneID:4554704"
/translation="MVFNKKISNIYAVTPNTFLNSALIKRVIIEHQISILQYRHKIND
DNIKLKEAYALRLLCLEYNTLFIINDDINLAEKIHADGVHLGKDDDSIQQARQQLGDA
AIIGMSCYDNIDLALQAQNQGASYVAFGALFDSNTKPNAPYCPFSLITKVKKILNIPI
VGIGGIDLHNQQQAFDAGCDAVAMINTLFKKHH"
misc_feature complement(99339..99881)
/locus_tag="Rmag_0082"
/note="Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution of
the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
Region: TMP_TenI; cd00564"
/db_xref="CDD:73367"
misc_feature complement(order(99351..99362,99414..99416,99426..99428,
99498..99500,99504..99506,99525..99527,99531..99533,
99585..99587,99657..99659,99792..99794,99798..99800,
99870..99872,99876..99878))
/locus_tag="Rmag_0082"
/note="thiamine phosphate binding site [chemical binding];
other site"
/db_xref="CDD:73367"
misc_feature complement(order(99351..99356,99414..99416,99495..99500,
99504..99506,99585..99587,99642..99644,99699..99704,
99786..99788,99792..99794,99798..99800))
/locus_tag="Rmag_0082"
/note="active site"
/db_xref="CDD:73367"
misc_feature complement(order(99495..99497,99585..99587,99642..99644,
99651..99653,99699..99704,99786..99788,99792..99794))
/locus_tag="Rmag_0082"
/note="pyrophosphate binding site [ion binding]; other
site"
/db_xref="CDD:73367"
gene 99907..100869
/locus_tag="Rmag_0083"
/db_xref="GeneID:4554705"
CDS 99907..100869
/locus_tag="Rmag_0083"
/note="PFAM: protein of unknown function DUF1239"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903353.1"
/db_xref="GI:118602138"
/db_xref="InterPro:IPR010664"
/db_xref="GeneID:4554705"
/translation="MASFQLRLNLLSTISIIVIIGVIWLLIELLLSSFFIPENKKKIS
LIQNKTTYKGKVYLEKIHNFSLQEFDAKVQLSHFVKAKSYFSFKNSPALLIEPEVIFY
DENGLKDYVLKSKCAHYTDRGEIKFKGEVSIQSSNGLSHKVNTEELLVGIKTSDLISK
KQVTYLGKNVKIIAQGMRMYAKDDTMRLIGRTKINQGNGQQILTKDLYINQSKGQKHY
YSNNKTTYLAKKNIIYANGVDMMNRQKQVIQLLGKVKIVQDSGSKIFTKNLTIDQSDG
LEVYRTKEKIHYQSKIVDIHAFGMNYDVIEQKIRLTGGVVGRYE"
misc_feature 100084..100485
/locus_tag="Rmag_0083"
/note="Lipopolysaccharide-assembly, LptC-related; Region:
LptC; pfam06835"
/db_xref="CDD:203530"
gene 100862..101347
/locus_tag="Rmag_0084"
/db_xref="GeneID:4554706"
CDS 100862..101347
/locus_tag="Rmag_0084"
/note="PFAM: OstA family protein;
KEGG: noc:Noc_2791 OstA-like protein"
/codon_start=1
/transl_table=11
/product="OstA family protein"
/protein_id="YP_903354.1"
/db_xref="GI:118602139"
/db_xref="InterPro:IPR005653"
/db_xref="GeneID:4554706"
/translation="MSKVLLICLLALSGYAIALVIDNYKPIEVSASMVVIDEKKKIST
YVGKASITQGSFMLNAEIIQLFSNQQEVIKIIAKGTYKQPAHYQQNQSNQSRFIEAQA
LNITYLTKQELVHLKGKAHLVQGVDFFSGDTLDYDIKNDKIITSMSKDGTQRVRFKIK
L"
sig_peptide 100862..100918
/locus_tag="Rmag_0084"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.999) with cleavage site probability 0.991 at
residue 19"
misc_feature 100913..101338
/locus_tag="Rmag_0084"
/note="OstA-like protein; Region: OstA; cl00844"
/db_xref="CDD:193952"
gene 101492..102700
/gene="sat"
/locus_tag="Rmag_0085"
/db_xref="GeneID:4554707"
CDS 101492..102700
/gene="sat"
/locus_tag="Rmag_0085"
/EC_number="2.7.7.4"
/note="ATP sulfurylase; ATPS; converts ATP and sulfate to
5'phosphosulfate and pyrophosphate; in some organisms this
enzyme is involved in the incorporation of inorganic
sulfate while in others it is involved in the production
of ATP in the reverse direction; the enzyme from Thermus
thermophilus is dimeric and binds a zinc ion that is
coordinated by cysteine and histidine residues that are
not found in all related proteins but is found in some
thermophilic organisms"
/codon_start=1
/transl_table=11
/product="sulfate adenylyltransferase"
/protein_id="YP_903355.1"
/db_xref="GI:118602140"
/db_xref="InterPro:IPR002650"
/db_xref="GeneID:4554707"
/translation="MTKLVPPHGSDTLKSLALEGNALTVELERAKLLPKINCSSREEG
DIIMMGVGGFTPLEGFMGKADWQSVCDNMTIESGLFWPIPITLSTDNEGVNQGDEVAL
VNGETDEIIATMVISEKYSIDKTHECNTVYKTTEIEHPGVVMVMAQGKYNLAGSIKVL
SDGGFPEKYSSLYMTPMETRAYFDDKGWKTVAAFQTRNPMHRSHEYLVKIAVEVCDGV
MIHSVLGNLKAGDIPANVRSEAISVLIENYFVDNTILQSGYPLDMRYAGPREALLHAL
FRQNYGCSHLIVGRDHAGIDDYYGPFDAHNIFDEIADDALMTKALKIDWTFWCHKCGG
MSSMKTCPHSAEDRALLSGTKVRKMLSDSEDLPETFSRPEVAKVLQAYYAGIKDEDKV
EIKLNGHSAK"
misc_feature 101495..102670
/gene="sat"
/locus_tag="Rmag_0085"
/note="sulfate adenylyltransferase; Reviewed; Region: sat;
PRK04149"
/db_xref="CDD:179751"
misc_feature 101588..102637
/gene="sat"
/locus_tag="Rmag_0085"
/note="ATP-sulfurylase; Region: ATPS; cd00517"
/db_xref="CDD:173895"
misc_feature order(102071..102085,102101..102103,102110..102112,
102278..102280,102353..102361,102365..102370,
102461..102469)
/gene="sat"
/locus_tag="Rmag_0085"
/note="active site"
/db_xref="CDD:173895"
misc_feature 102092..102103
/gene="sat"
/locus_tag="Rmag_0085"
/note="HXXH motif; other site"
/db_xref="CDD:173895"
misc_feature 102164..102196
/gene="sat"
/locus_tag="Rmag_0085"
/note="flexible loop; other site"
/db_xref="CDD:173895"
gene 102897..103766
/locus_tag="Rmag_0086"
/db_xref="GeneID:4554708"
CDS 102897..103766
/locus_tag="Rmag_0086"
/note="KEGG: tbd:Tbd_2284 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903356.1"
/db_xref="GI:118602141"
/db_xref="GeneID:4554708"
/translation="MIDINSTPITSLLVEGISYVDMQIYVIIMIALVVVMTALDLLHK
KSATYFFNTAAKADKDLAAGDAPCSLGKEEDRLKVLSAGDKVNILASTVVVDVVTAGE
FSNGLRRFVHILTMWGFIFFNASTAIIIFGTQETQVLAQVWNVGAIMLFIGTFWYWFG
FKVDSQAEGYSWTKIILKRDMFSLSLMATSVTALGWNIYGGGIGVWFILVLFSTTFLF
GGVYWSKFSHMFFKPAAAYNRRIIKANGTNENLPHETRDDVWQQNRHSMGLLKDAPMN
MGLGIKREAPKHY"
gene 103798..104277
/locus_tag="Rmag_0087"
/db_xref="GeneID:4554709"
CDS 103798..104277
/locus_tag="Rmag_0087"
/note="TIGRFAM: adenylylsulfate reductase, beta subunit;
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: tbd:Tbd_2283 adenylylsulfate reductase, beta
subunit"
/codon_start=1
/transl_table=11
/product="adenylylsulfate reductase, beta subunit"
/protein_id="YP_903357.1"
/db_xref="GI:118602142"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR011802"
/db_xref="GeneID:4554709"
/translation="MPTFVYMTRCDGCGHCVDICPSNIMHIDDKYRRAYNIEPNMCWE
CYSCVKACPHQAIDVRGYADFAPLGHSVRVIRDEEKGTIAWRVKFRDGRVKNFLSPIT
TQPWGTKIPDFRNEPEPSDDMRNSQLLAFEPKYIRMDDGDIHTLESNGLKFKEGVYY"
misc_feature 103798..104193
/locus_tag="Rmag_0087"
/note="adenosine phosphosulphate reductase, beta subunit;
Region: aprB; TIGR02060"
/db_xref="CDD:131115"
misc_feature <103798..103977
/locus_tag="Rmag_0087"
/note="RPB11 and RPB3 subunits of RNA polymerase; Region:
RNAP_RPB11_RPB3; cl11409"
/db_xref="CDD:209307"
misc_feature 103972..104238
/locus_tag="Rmag_0087"
/note="Adenosine-5'-phosphosulfate reductase beta subunit;
Region: APS-reductase_C; pfam12139"
/db_xref="CDD:204833"
gene 104277..106160
/locus_tag="Rmag_0088"
/db_xref="GeneID:4554710"
CDS 104277..106160
/locus_tag="Rmag_0088"
/EC_number="1.8.99.2"
/note="catalyzes the reduction of adenosine
5'-phosphosulfate to AMP and sulfite"
/codon_start=1
/transl_table=11
/product="adenylylsulfate reductase subunit alpha"
/protein_id="YP_903358.1"
/db_xref="GI:118602143"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR011803"
/db_xref="GeneID:4554710"
/translation="MGIKTIVEDNIDILVVGAGLGGTGAAYEARYWGRNKKIIIAEKA
NINRSGAVAQGLYAINCYMGTRFGENNPEDHVRYARMDLMGIVREDLLFDMARHVDSA
VHKFEEWGLPLMKDPKREDIGAYMREGRWQIMIHGESYKPIVAEAATKQVDKVYNRIM
VTHLLMDDAQENRIAGAVGFNVRTGNYHVFKSKTTIVGAGGASNIFKPRSVGEGMGRV
WYAPWSSGSAYGLLIEAGAKMTQMENRIVLARFKDGYGPVGAYFLHLKTYTQNGYGDE
YESKWFPALSKMVGKEYLDTEGQHLSHKPIPTCLRNHAFISEVNAGRGPIHMVTMEAF
QDPHLEEVGWENFLGMTVGQAVLWAATDVDPKYENPELTTSEPYVMGSHATGCGAWCS
GPEDVSPDEYFWGYNRMTTVDGLFGAGDTVGGTPHAFSSGSFTEGRLAAKAACKYIDD
GKAEGIRVSDKQIAERKEQIFKPLENYTIGRNEIVAGTVSPSYILPMSGLQRLQKLMD
EYCGGVTVSYVTNDKLLNIGLKKLAILEEDLEHIGAEDFHQLMRGWELRHRHRTSECV
TQHTLFRKETRWPGYYYRGDAMKLDDKNWHVLTVSHRDRVTGKYTLEKAPCYHLVGEK
DEK"
misc_feature 104277..106145
/locus_tag="Rmag_0088"
/note="adenylylsulfate reductase subunit alpha; Validated;
Region: PRK06854"
/db_xref="CDD:180733"
misc_feature 105777..106124
/locus_tag="Rmag_0088"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene 106231..106581
/locus_tag="Rmag_0089"
/db_xref="GeneID:4555313"
CDS 106231..106581
/locus_tag="Rmag_0089"
/note="KEGG: tbd:Tbd_2281 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903359.1"
/db_xref="GI:118602144"
/db_xref="GeneID:4555313"
/translation="MNIIDKTDEEILAIASPMWDDLVKYSNNSNYGAFSRHFSEDFLR
GANEIEMGKQFARSELTKGLEKNAGYLGMIRRGQYVTVLYKQTHSKKEGEYLGRLVLG
YEDDVVKIFGTTIF"
gene 106587..107093
/locus_tag="Rmag_0090"
/db_xref="GeneID:4555314"
CDS 106587..107093
/locus_tag="Rmag_0090"
/note="KEGG: tbd:Tbd_2280 putative peptidyl-prolyl
cis-trans isomerase"
/codon_start=1
/transl_table=11
/product="putative peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_903360.1"
/db_xref="GI:118602145"
/db_xref="GeneID:4555314"
/translation="MNNVIQEAKYVELIYKVIDKKTGNVFSEIEYPVGYVHGVNDTLG
KQVISELEGRKQGDILEVNIDVEKIYGSRDETLVFIDKIENVPLEYQKIGAKVVMENS
KGDSKEFLVTKVDDKTVTIDGNNLLCGREVKFLLEILLVRDATDEEIEAGGMIEKQSD
IEQLLTVH"
misc_feature 106665..>107042
/locus_tag="Rmag_0090"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; cl11587"
/db_xref="CDD:209359"
gene 107096..107455
/locus_tag="Rmag_0091"
/db_xref="GeneID:4555315"
CDS 107096..107455
/locus_tag="Rmag_0091"
/note="KEGG: tbd:Tbd_1503 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903361.1"
/db_xref="GI:118602146"
/db_xref="GeneID:4555315"
/translation="MSIDFTELEIKTIQSAVDRRWRKEKIEANLANIEITKEGEDEST
FTPAVVWEDENSTFIILKIGVFSYKSFFYYLTDQRFDTGVPEYNDLYECANKLLKVQA
DFMLSKNIKDLGLHIQK"
gene complement(107558..109558)
/gene="hppA"
/locus_tag="Rmag_0092"
/db_xref="GeneID:4555316"
CDS complement(107558..109558)
/gene="hppA"
/locus_tag="Rmag_0092"
/EC_number="3.6.1.1"
/note="pyrophosphate-energized proton pump;
pyrophosphate-energized inorganic pyrophosphatase;
H+-PPase; can cleave pyrophosphate to two phosphates; can
generate a proton motive force and drive pyrophosphate
synthesis when PMF is sufficient"
/codon_start=1
/transl_table=11
/product="membrane-bound proton-translocating
pyrophosphatase"
/protein_id="YP_903362.1"
/db_xref="GI:118602147"
/db_xref="InterPro:IPR004131"
/db_xref="GeneID:4555316"
/translation="MDTILILAISASIIAVLYGLFTIIWINKQPAGSDKMKEISDAIT
QGANAYLNRQYSTIAIVGVVLLIIITYFLGVTIGLGFLVGAVLSGVTGYIGMNVSVKS
NSRTAQAANNGMNTAFQVAFKGGAVTGMLVVGLALLGVSGYYAGMIEYGVAQKDALHA
LIGLAFGGSLISIFARLGGGIFTKGADVGADIVGKVEAGIPEDDPRNPAVIADNVGDN
VGDCAGMAADLFETYAVTIVATMMLAGVLGLGDNAILYPLALGAASIITSIVGTFFVK
VSDNGSIMGALYKGLIASAGMAAIAFYFITNHMNMEINLFYASLIGLVLTAVMVVITE
YYTSTEYSPVQHVAEASLTGDGTNVIAGIGLSMKSTSLPVLAVCSSIWGAYELGGLYA
IAIAATAMLSMTGVIVALDAYGPITDNAGGIAEMAELPEKIRKITDPLDAVGNTTKAV
TKGYAIASAGLATLVLFADFTNELRTIEQFKDIAFDLSNHKVIIGLFLGGLVPYLFGA
MAMEAVGRAAGDIVNEVRRQFREIPDIMNYTQKPDYSKAVDMLTKSAIKEMILPSILP
IAFPVIVGLLLGAEALGGLLIGSIVTGIFVAISMTTGGGAWDNAKKYIEDGHFGGKGS
DTHKAAVTGDTVGDPYKDTAGPAINPLIKIINIVAIMIIPFL"
misc_feature complement(107606..109513)
/gene="hppA"
/locus_tag="Rmag_0092"
/note="Inorganic pyrophosphatase [Energy production and
conversion]; Region: OVP1; COG3808"
/db_xref="CDD:33602"
misc_feature complement(107606..109483)
/gene="hppA"
/locus_tag="Rmag_0092"
/note="membrane-bound proton-translocating
pyrophosphatase; Validated; Region: hppA; PRK00733"
/db_xref="CDD:179102"
gene complement(110185..110835)
/gene="adk"
/locus_tag="Rmag_0093"
/db_xref="GeneID:4555317"
CDS complement(110185..110835)
/gene="adk"
/locus_tag="Rmag_0093"
/EC_number="2.7.4.3"
/note="essential enzyme that recycles AMP in active cells;
converts ATP and AMP to two molecules of ADP"
/codon_start=1
/transl_table=11
/product="adenylate kinase"
/protein_id="YP_903363.1"
/db_xref="GI:118602148"
/db_xref="InterPro:IPR000850"
/db_xref="InterPro:IPR006259"
/db_xref="InterPro:IPR007862"
/db_xref="InterPro:IPR011769"
/db_xref="GeneID:4555317"
/translation="MNIILLGPPGAGKGTQATNICQKYSIPQISTGDMLREAVKADTP
LGIEAKKVMDVGGLISDDIIIGLVKERIQENDCKNGFLFDGFPRTIVQAEALKTDGVK
IDFVVEIQVPYEDIIARMSGRRAHLTSGRTYHIVYNPPKVEGIDDITGEELIQRTDDA
EDTVRARLNIYHKQTKPLVDYYQSWMNKNSDAPKYGAVVGVGTLDEVRDRVYAQLN"
misc_feature complement(110191..110835)
/gene="adk"
/locus_tag="Rmag_0093"
/note="adenylate kinase; Reviewed; Region: adk; PRK00279"
/db_xref="CDD:178957"
misc_feature complement(110215..110832)
/gene="adk"
/locus_tag="Rmag_0093"
/note="Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP) to
adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for...; Region: ADK;
cd01428"
/db_xref="CDD:30189"
misc_feature complement(order(110560..110562,110572..110577,
110581..110586,110659..110661,110728..110730,
110743..110745))
/gene="adk"
/locus_tag="Rmag_0093"
/note="AMP-binding site [chemical binding]; other site"
/db_xref="CDD:30189"
misc_feature complement(order(110323..110325,110335..110337,
110467..110469,110572..110574,110584..110586,
110728..110730))
/gene="adk"
/locus_tag="Rmag_0093"
/note="ATP-AMP (Ap5A)-binding site [chemical binding];
other site"
/db_xref="CDD:30189"
gene complement(110906..112150)
/locus_tag="Rmag_0094"
/db_xref="GeneID:4555318"
CDS complement(110906..112150)
/locus_tag="Rmag_0094"
/EC_number="2.7.1.90"
/note="catalyzes the formation of D-fructose
1,6-bisphosphate from D-fructose 6-phosphate in
glycolysis"
/codon_start=1
/transl_table=11
/product="6-phosphofructokinase"
/protein_id="YP_903364.1"
/db_xref="GI:118602149"
/db_xref="InterPro:IPR000023"
/db_xref="GeneID:4555318"
/translation="MKNAFYAQSGGVTAVINASACGVIETVRKHPDKIGTIYAGQNGI
IGALTENLIDTSKESNADIKALKHTPSGGFGSCRYKMKSLETNKAEYERLIEVFKEYD
VGYFFYNGGGDSADTCLKVSQLSKSMGYPIQAIHVPKTVDNDLPITDNCPGFGSVAKY
IAVSIMEASFDVASMAATSTKIFVLEVMGRHAGWIAAAGGLVDNSIPVVILFPEVDFD
EKKFLAKVNKNVKEFNYCTIVVSEGAKWPDGCFLAEQGTHDDFGNAQLGGAAPVVANL
IKDTLGYKYHWAVADYLQRAARHLASKSDVEQAYALGVAAVNMALEGKNSVMPTIIRT
SNNPYTWEIGSGELKDVANVEKMMPMNYISNDGFGITDACREYLQPLIEGEDYPPYKN
GLPDYVVMKKIMTDKKLPTFEI"
misc_feature complement(110915..112150)
/locus_tag="Rmag_0094"
/note="6-phosphofructokinase; Provisional; Region:
PRK14072"
/db_xref="CDD:184488"
misc_feature complement(order(111266..111268,111275..111277,
111425..111427,111581..111589,111719..111721,
111725..111727,111731..111733,111800..111805,
111809..111817,111917..111919,112028..112030,
112118..112120))
/locus_tag="Rmag_0094"
/note="active site"
/db_xref="CDD:29437"
misc_feature complement(order(111800..111805,111809..111817,
111917..111919,112028..112030,112118..112120))
/locus_tag="Rmag_0094"
/note="ADP/pyrophosphate binding site [chemical binding];
other site"
/db_xref="CDD:29437"
misc_feature complement(order(111140..111142,111197..111199,
111218..111220,111230..111235,111452..111454,
111539..111541,111545..111550,111632..111634,
111641..111643,111653..111655,111701..111703,
111956..111958,111965..111967,111980..111982,
112076..112078,112088..112090))
/locus_tag="Rmag_0094"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29437"
misc_feature complement(order(111446..111454,111458..111460,
111527..111529,111539..111541,111632..111634,
111965..111970,111977..111982,112076..112078,
112088..112090))
/locus_tag="Rmag_0094"
/note="allosteric effector site; other site"
/db_xref="CDD:29437"
misc_feature complement(order(111266..111268,111275..111277,
111293..111295,111425..111427,111581..111589,
111608..111610,111719..111721,111725..111727,
111731..111733))
/locus_tag="Rmag_0094"
/note="fructose-1,6-bisphosphate binding site; other site"
/db_xref="CDD:29437"
gene complement(114090..114329)
/locus_tag="Rmag_0095"
/db_xref="GeneID:4555319"
CDS complement(114090..114329)
/locus_tag="Rmag_0095"
/note="KEGG: sdn:Sden_3728 cadherin"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903365.1"
/db_xref="GI:118602150"
/db_xref="GeneID:4555319"
/translation="MQLESSTTANDIESDSLNFSIQYKPSWSAFNTATGTLNGTPIES
NIGGGFNHSIRFINRYYLANTITMPNTFLSSDVVG"
misc_feature complement(<114189..114317)
/locus_tag="Rmag_0095"
/note="Dystroglycan-type cadherin-like domains; Region:
CADG; smart00736"
/db_xref="CDD:128975"
gene complement(115810..116482)
/locus_tag="Rmag_0096"
/pseudo
/db_xref="GeneID:4555466"
gene complement(116484..117872)
/locus_tag="Rmag_0097"
/db_xref="GeneID:4555320"
CDS complement(116484..117872)
/locus_tag="Rmag_0097"
/EC_number="6.1.1.16"
/note="KEGG: mca:MCA0509 cysteinyl-tRNA synthetase;
TIGRFAM: cysteinyl-tRNA synthetase;
PFAM: cysteinyl-tRNA synthetase, class Ia"
/codon_start=1
/transl_table=11
/product="cysteinyl-tRNA synthetase"
/protein_id="YP_903366.1"
/db_xref="GI:118602151"
/db_xref="InterPro:IPR002308"
/db_xref="GeneID:4555320"
/translation="MLKIYNTLSKQKEVFRPINADKVGIYVCGMTVYDYCHMGHARIL
VIFDVIIRHLRRYFPNVEYVRNITDIDDKIIKRAIENKEDIYALTNRFIDAMHEDERA
LGVLPPDVEPRATNAMKQIFYMIKSLIEKGFAYQAHNGDVYYSVRHFKNYGKLSRKNI
DKLEAGARIEIESAKKNPLDFVLWKMSKPNEPSWDSPWGQGRPGWHIECSAMSTHHLG
NHFDIHGGGMDLSFPHHENEIAQSEGANNCTFVNTWMHIGFVNIDDEKMSKSLNNFFT
IRSILESYNCETLRYFIMSSHYRSPLNFSDDNLNKAKSSLSRLYTAIRGLNTSSTVTE
KVPMYFDYSVRFNEALDNDFNTPIALSILFELAKTVNLQRKKDVDQANALAQLLKKLG
DYIGILQMDADKFLKQGISLSNSEVDVKITSRNEARADKNFALSDQIRDKLAELGIVL
EDNANDTTWRRK"
misc_feature complement(116487..117872)
/locus_tag="Rmag_0097"
/note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
PRK00260"
/db_xref="CDD:178951"
misc_feature complement(<117531..117866)
/locus_tag="Rmag_0097"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature complement(order(117669..117671,117675..117677,
117741..117746,117753..117758,117762..117764,
117780..117791))
/locus_tag="Rmag_0097"
/note="active site"
/db_xref="CDD:173899"
misc_feature complement(117753..117764)
/locus_tag="Rmag_0097"
/note="HIGH motif; other site"
/db_xref="CDD:173899"
misc_feature complement(116958..>117260)
/locus_tag="Rmag_0097"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature complement(117063..117077)
/locus_tag="Rmag_0097"
/note="KMSKS motif; other site"
/db_xref="CDD:173899"
misc_feature complement(116490..116957)
/locus_tag="Rmag_0097"
/note="Anticodon-binding domain of cysteinyl tRNA
synthetases; Region: Anticodon_Ia_Cys; cd07963"
/db_xref="CDD:153417"
misc_feature complement(order(116493..116495,116517..116528,
116553..116555,116562..116564,116574..116576,
116589..116591,116601..116603,116760..116762,
116769..116771,116778..116783,116790..116792,
116799..116804,116808..116810,116901..116903,
116910..116912,116919..116921,116928..116930,
116940..116942,116949..116951))
/locus_tag="Rmag_0097"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153417"
misc_feature complement(order(116517..116525,116553..116555,
116562..116564,116574..116576,116589..116591,
116601..116603))
/locus_tag="Rmag_0097"
/note="anticodon binding site; other site"
/db_xref="CDD:153417"
gene 118002..118601
/locus_tag="Rmag_0098"
/db_xref="GeneID:4555321"
CDS 118002..118601
/locus_tag="Rmag_0098"
/note="PFAM: alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen; Redoxin domain protein;
KEGG: tcx:Tcr_1387 alkyl hydroperoxide reductase/thiol
specific antioxidant/Mal allergen"
/codon_start=1
/transl_table=11
/product="alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen"
/protein_id="YP_903367.1"
/db_xref="GI:118602152"
/db_xref="InterPro:IPR000866"
/db_xref="InterPro:IPR000886"
/db_xref="InterPro:IPR013740"
/db_xref="GeneID:4555321"
/translation="MSVLVTQQAPDFTAAAVLADGSIVDNFQLSNLKGKKIVLFFYPL
DFTFVCPSEILACHHRMMQFNDKGVEVIGVSVDSQFTHNAWRNTAPADGGLGVIDFPL
VADTDHSIMEAYGIVHPAGIALRASFLIDENFEVRHQVVNDLPLGRNIDEMLRMVDAL
DFHTEHGEVCPAGWNKGDEGMKDTPAGVSDYLSKHADEL"
misc_feature 118008..118598
/locus_tag="Rmag_0098"
/note="peroxidase; Provisional; Region: PRK15000"
/db_xref="CDD:184962"
misc_feature 118014..118532
/locus_tag="Rmag_0098"
/note="Peroxiredoxin (PRX) family, Typical 2-Cys PRX
subfamily; PRXs are thiol-specific antioxidant (TSA)
proteins, which confer a protective role in cells through
its peroxidase activity by reducing hydrogen peroxide,
peroxynitrite, and organic hydroperoxides; Region:
PRX_Typ2cys; cd03015"
/db_xref="CDD:48564"
misc_feature order(118014..118016,118143..118148,118155..118157,
118344..118346,118371..118373,118410..118418,
118422..118430,118440..118445,118464..118466,
118509..118520)
/locus_tag="Rmag_0098"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48564"
misc_feature order(118137..118139,118239..118244,118317..118319,
118323..118325)
/locus_tag="Rmag_0098"
/note="decamer (pentamer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:48564"
misc_feature order(118140..118142,118149..118151,118374..118376)
/locus_tag="Rmag_0098"
/note="catalytic triad [active]"
/db_xref="CDD:48564"
misc_feature order(118149..118151,118509..118511)
/locus_tag="Rmag_0098"
/note="peroxidatic and resolving cysteines [active]"
/db_xref="CDD:48564"
gene 118857..119927
/locus_tag="Rmag_0099"
/db_xref="GeneID:4555322"
CDS 118857..119927
/locus_tag="Rmag_0099"
/EC_number="1.1.1.85"
/note="catalyzes the oxidation of 3-isopropylmalate to
3-carboxy-4-methyl-2-oxopentanoate in leucine
biosynthesis"
/codon_start=1
/transl_table=11
/product="3-isopropylmalate dehydrogenase"
/protein_id="YP_903368.1"
/db_xref="GI:118602153"
/db_xref="InterPro:IPR001804"
/db_xref="InterPro:IPR004429"
/db_xref="GeneID:4555322"
/translation="MLKVLILPGDGIGQEITTQALKVIDCLNADFNLGMMLEHGLVGG
NAYDETGSPLPQATLDAARQCDSILLGAVGGYQWEFLERDLRPERGLLELRAEMDLFS
NLRPAILYPQLVNVSTLKEEVVSGLDLMIVRELVAGIYFGKPRGVEIRDGQKYGFNTA
AYYELEIRRIGRSAFKIAQLRNKRVCSIDKANVLEVCELWREVMTDVAKDYPNVELTH
MYVDNAAMQLVKAPKQFDVMVTSNLFGDVLSDCAAMLTGSIGMLPSASLNQDGFGMYE
PIHGSAPDIAGKDIANPLAAILSVAMMLRYSLNQASLACKIEAAVNTVLNKGYRTQDI
AIESDLVVGTNKMGDLVVEALV"
misc_feature 118857..119921
/locus_tag="Rmag_0099"
/note="3-isopropylmalate dehydrogenase; Provisional;
Region: PRK00772"
/db_xref="CDD:179119"
misc_feature 118857..119921
/locus_tag="Rmag_0099"
/note="tartrate dehydrogenase; Provisional; Region:
PRK08194"
/db_xref="CDD:181281"
gene 121096..122177
/locus_tag="Rmag_0100"
/pseudo
/db_xref="GeneID:4555467"
gene 122225..122770
/gene="nudE"
/locus_tag="Rmag_0101"
/db_xref="GeneID:4555323"
CDS 122225..122770
/gene="nudE"
/locus_tag="Rmag_0101"
/note="ADP-sugar pyrophosphatase; catalyzes the formation
of D-ribose 5-phosphate from ADP-ribose; can also act on
ADP-mannose and ADP-glucose"
/codon_start=1
/transl_table=11
/product="ADP-ribose diphosphatase NudE"
/protein_id="YP_903369.1"
/db_xref="GI:118602154"
/db_xref="InterPro:IPR000086"
/db_xref="GeneID:4555323"
/translation="MRKRPIVLNIKTIATTSFFNIEEMDIEFSNGSKRIYERLKPPGN
GAVLVIPMLDIETVLMIYEYSGGTDRYELTLTKGKIDGGETLIEAANRELIEEIGYGS
NKLTFIKEMTIAPGYQSSITYIVLAQDLYKASAQGDEPEPLEIAAFKMSDLENLVYNE
DLTEARSIAALYMARDVINNQ"
misc_feature 122225..122767
/gene="nudE"
/locus_tag="Rmag_0101"
/note="adenosine nucleotide hydrolase NudE; Provisional;
Region: nudE; PRK11762"
/db_xref="CDD:183303"
misc_feature 122351..122749
/gene="nudE"
/locus_tag="Rmag_0101"
/note="ADP-ribose pyrophosphatase (ADPRase) catalyzes the
hydrolysis of ADP-ribose and a variety of additional
ADP-sugar conjugates to AMP and ribose-5-phosphate. Like
other members of the Nudix hydrolase superfamily, it
requires a divalent cation, such as Mg2+; Region:
ADPRase_NUDT5; cd03424"
/db_xref="CDD:72882"
misc_feature order(122351..122353,122357..122359,122408..122410,
122414..122416,122420..122422,122435..122437,
122552..122563,122567..122569,122573..122587,
122645..122650,122654..122656,122693..122698,
122717..122719,122729..122731,122738..122740)
/gene="nudE"
/locus_tag="Rmag_0101"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:72882"
misc_feature order(122360..122362,122417..122419,122459..122461,
122501..122503,122513..122515,122582..122584)
/gene="nudE"
/locus_tag="Rmag_0101"
/note="ADP-ribose binding site [chemical binding]; other
site"
/db_xref="CDD:72882"
misc_feature order(122417..122419,122453..122461,122501..122503,
122513..122515,122582..122584,122645..122647)
/gene="nudE"
/locus_tag="Rmag_0101"
/note="active site"
/db_xref="CDD:72882"
misc_feature order(122456..122467,122471..122524)
/gene="nudE"
/locus_tag="Rmag_0101"
/note="nudix motif; other site"
/db_xref="CDD:72882"
misc_feature order(122501..122503,122513..122515,122645..122647)
/gene="nudE"
/locus_tag="Rmag_0101"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:72882"
gene 122782..123281
/locus_tag="Rmag_0102"
/pseudo
/db_xref="GeneID:4555468"
gene 123511..124758
/locus_tag="Rmag_0103"
/db_xref="GeneID:4555324"
CDS 123511..124758
/locus_tag="Rmag_0103"
/EC_number="4.1.1.20"
/note="TIGRFAM: diaminopimelate decarboxylase;
PFAM: Orn/DAP/Arg decarboxylase 2;
KEGG: tcx:Tcr_1847 diaminopimelate decarboxylase"
/codon_start=1
/transl_table=11
/product="diaminopimelate decarboxylase"
/protein_id="YP_903370.1"
/db_xref="GI:118602155"
/db_xref="InterPro:IPR000183"
/db_xref="InterPro:IPR002986"
/db_xref="GeneID:4555324"
/translation="MGFSYKNHILYAESVAITDLIDAYESPLYVYSRTDIENNWYEFD
QAFGTHPHLVCYAVKANSNLAVLNVLSKIGSGFDIVSIGELERVLFAGADASRCVFSG
VAKTKFEIKRALEVGIFCFNVESMAEMNRIEQVAKDMGTQAQISLRINPNVDAKTHPY
ISTGLKENKFGVDIDDVVPIYRMAHNSPYLAVKGLNCHIGSQLVEVSPFLDALDKVLE
LVAKLDKINIRITHLDLGGGIGIKYNNEQIIDINAYIASILDKVKMNDLKIILEPGRA
VVGNAGVFVTKVEFLKQNSDKSFAIIDGAMNDLLRPAFYQTYHQVLPVNENAKGVDAN
WDLVGPICETGDFLAKNRKLSLSEGDYLALMSTGAYGFTMSSNYNSRPRVAEVMVSGN
QHTLVRERETIQDLFNKEHIIND"
misc_feature 123520..124740
/locus_tag="Rmag_0103"
/note="diaminopimelate decarboxylase; Region: lysA;
TIGR01048"
/db_xref="CDD:188105"
misc_feature 123580..124677
/locus_tag="Rmag_0103"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Diaminopimelate Decarboxylase; Region:
PLPDE_III_DapDC; cd06828"
/db_xref="CDD:143501"
misc_feature order(123679..123681,123685..123687,123742..123744,
123811..123813,123952..123954,124096..124098,
124102..124104,124111..124113,124219..124224,
124324..124335,124441..124443,124453..124455,
124534..124536,124618..124620,124630..124632,
124642..124644)
/locus_tag="Rmag_0103"
/note="active site"
/db_xref="CDD:143501"
misc_feature order(123679..123681,123685..123687,123742..123744,
123811..123813,123952..123954,124096..124098,
124102..124104,124111..124113,124219..124224,
124324..124335,124534..124536,124618..124620)
/locus_tag="Rmag_0103"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143501"
misc_feature order(123685..123687,124102..124104,124111..124113,
124333..124335,124441..124443,124453..124455,
124534..124539,124618..124620,124630..124632,
124642..124644)
/locus_tag="Rmag_0103"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143501"
misc_feature order(123685..123687,124534..124536)
/locus_tag="Rmag_0103"
/note="catalytic residues [active]"
/db_xref="CDD:143501"
misc_feature order(123700..123705,123748..123753,123757..123762,
123817..123825,123835..123837,123880..123882,
123889..123891,124012..124023,124378..124380,
124384..124386,124405..124407,124411..124413,
124525..124542,124546..124548,124627..124635,
124639..124650,124657..124659)
/locus_tag="Rmag_0103"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143501"
gene 124751..125053
/locus_tag="Rmag_0104"
/db_xref="GeneID:4555325"
CDS 124751..125053
/locus_tag="Rmag_0104"
/note="PFAM: protein of unknown function UPF0044;
KEGG: pmu:PM0713 putative RNA-binding protein containing
KH domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903371.1"
/db_xref="GI:118602156"
/db_xref="InterPro:IPR001890"
/db_xref="GeneID:4555325"
/translation="MIKLTNNQKKFLRSKGHSLEPIVMVGQHGLSESVLVELKATMEK
HELLKIKIRIDKREEKQKIIAKIISIYNAYLVQVIGNIVVIYRGFDEEPQIILPRK"
misc_feature 124760..125011
/locus_tag="Rmag_0104"
/note="CRS1 / YhbY (CRM) domain; Region: CRS1_YhbY;
pfam01985"
/db_xref="CDD:190184"
gene 125019..126146
/locus_tag="Rmag_0105"
/db_xref="GeneID:4555326"
CDS 125019..126146
/locus_tag="Rmag_0105"
/EC_number="2.4.1.182"
/note="KEGG: sde:Sde_2584 lipid-A-disaccharide synthase;
TIGRFAM: lipid-A-disaccharide synthase;
PFAM: glycosyl transferase, family 19"
/codon_start=1
/transl_table=11
/product="lipid-A-disaccharide synthase"
/protein_id="YP_903372.1"
/db_xref="GI:118602157"
/db_xref="InterPro:IPR003835"
/db_xref="GeneID:4555326"
/translation="MKNHKLSFQESKGPIKIAISAAETSGDLIGSKLIKSLKKQKSNV
SIEGLAGDKMIAAGCVQRWDQKQINVMGFSEVLKKLPFLLRLRKLIIVYFSNQKPDVF
IGVDAPDFNFVIERKLKSQGVKTVHFISPSIWAWRQFRIKKIKQSSDLVLCLFPFEVD
FYQAHNQRALFVGHPLAQSLLPRKSHIKTKNILLMPGSRQSEVKRLLPEMLLAAKIML
VQDPMLTFHLALANDELLNWATTQVENIPVEISLGRAHACMLNVDLALVASGTATLEL
ALVGVPMVVVYKLSSVSYFIALILVKSKYISLPNIIANKNLVPELIQNNANGNNIAKH
AMVIMSRDNKTLIKEFNAIHQQLNLGSSDESARIIYEFINE"
misc_feature 125058..126140
/locus_tag="Rmag_0105"
/note="lipid-A-disaccharide synthase; Reviewed; Region:
lpxB; PRK00025"
/db_xref="CDD:178802"
misc_feature 125208..126131
/locus_tag="Rmag_0105"
/note="ipid-A-disaccharide synthase; Provisional; Region:
PRK14089"
/db_xref="CDD:184498"
gene 126127..126963
/locus_tag="Rmag_0106"
/db_xref="GeneID:4555327"
CDS 126127..126963
/locus_tag="Rmag_0106"
/EC_number="2.4.2.19"
/note="KEGG: cbu:CBU_0098 nicotinate-nucleotide
pyrophosphorylase;
TIGRFAM: nicotinate-nucleotide pyrophosphorylase;
PFAM: Quinolinate phosphoribosyl transferase"
/codon_start=1
/transl_table=11
/product="nicotinate-nucleotide pyrophosphorylase
[carboxylating]"
/protein_id="YP_903373.1"
/db_xref="GI:118602158"
/db_xref="InterPro:IPR002638"
/db_xref="InterPro:IPR004393"
/db_xref="GeneID:4555327"
/translation="MNLSTSKYILDSVALALAEDFGTGDVSADLFLNKTIISAEIISR
EFSVICGIEYAQSTFLLLDDKIKLDWKIKDGECISSGQILCILIGSSKAIISAERVAL
NFLQMLSSVATKTHDLVSKINHTNAQLIDTRKTIPGLRLAQKYAVKCGGGVNHRMGLY
DCVMLKENHIIALGSITLAVKLAIEQYPNLPLIVEVEDLSQLQEVLILSGVARVLCDN
FSISDLIQAVGLAKGKLPLEASGNINENNIVEVANTGVDFISTGSITKNIQAIDLSLR
FI"
misc_feature 126151..126957
/locus_tag="Rmag_0106"
/note="quinolinate phosphoribosyltransferase; Validated;
Region: PRK09016"
/db_xref="CDD:181612"
misc_feature 126157..126954
/locus_tag="Rmag_0106"
/note="Quinolinate phosphoribosyl transferase (QAPRTase or
QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis of
NAD in both prokaryotes and eukaryotes. It catalyses the
reaction of quinolinic acid (QA) with...; Region: QPRTase;
cd01572"
/db_xref="CDD:29619"
misc_feature order(126205..126210,126418..126423,126433..126435,
126523..126525,126529..126531,126541..126546,
126601..126606,126616..126618,126622..126624,
126628..126633,126640..126642,126673..126675,
126922..126924)
/locus_tag="Rmag_0106"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29619"
misc_feature order(126520..126528,126589..126594,126775..126777,
126844..126849,126904..126906,126910..126915,
126922..126924)
/locus_tag="Rmag_0106"
/note="active site"
/db_xref="CDD:29619"
gene complement(126949..127707)
/locus_tag="Rmag_0107"
/db_xref="GeneID:4555328"
CDS complement(126949..127707)
/locus_tag="Rmag_0107"
/note="PFAM: inositol monophosphatase;
KEGG: noc:Noc_2419 3(2),5 -bisphosphate nucleotidase"
/codon_start=1
/transl_table=11
/product="inositol monophosphatase"
/protein_id="YP_903374.1"
/db_xref="GI:118602159"
/db_xref="InterPro:IPR000760"
/db_xref="InterPro:IPR002086"
/db_xref="GeneID:4555328"
/translation="MFDLLIPPLIRLTTQAGDMIMSLYKSELNIKIKSDETPLTIADK
NAHKLIIKTLSKLTPNTPILSEESEVIEFSERSKWHEYWLIDPLDGTRDFLEQTGEFC
ICIAYIKQHKPIFGMIYAPLSKTHYYTTDANNTFKQEGVIQTLNAHTNHHPLKIVIGH
WSSHNKQLQEHLGKYSAYKVSQLGSALKFCAIAEGRYDYYPKFGPCSEWDTAAGVCIL
QGAGGSVVNQDGKPLSYNTKDNLTSPIFFASNKS"
misc_feature complement(126964..127695)
/locus_tag="Rmag_0107"
/note="CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate
(PAPS) 3'-phosphatase, is a bacterial member of the
inositol monophosphatase family. It has been proposed that
CysQ helps control intracellular levels of PAPS, which is
an intermediate in cysteine...; Region: CysQ; cd01638"
/db_xref="CDD:30136"
misc_feature complement(order(127078..127083,127108..127110,
127144..127146,127219..127221,127231..127233,
127429..127431,127435..127452,127507..127512,
127579..127581))
/locus_tag="Rmag_0107"
/note="active site"
/db_xref="CDD:30136"
gene complement(127740..127816)
/locus_tag="Rmag_R0005"
/note="tRNA-Met3"
/db_xref="GeneID:4555578"
tRNA complement(127740..127816)
/locus_tag="Rmag_R0005"
/product="tRNA-Met"
/db_xref="GeneID:4555578"
gene complement(127824..129626)
/locus_tag="Rmag_0108"
/db_xref="GeneID:4555329"
CDS complement(127824..129626)
/locus_tag="Rmag_0108"
/note="TIGRFAM: RNA polymerase sigma factor RpoD;
PFAM: sigma-70 1.1 domain protein; sigma-70 region 3
domain protein; sigma-70 region 2 domain protein; sigma-70
region 4 domain protein; sigma-70, non-essential domain
protein; sigma-70 region 1.2;
KEGG: xfa:XF1350 RNA polymerase sigma-70 factor"
/codon_start=1
/transl_table=11
/product="RNA polymerase, sigma 70 subunit, RpoD"
/protein_id="YP_903375.1"
/db_xref="GI:118602160"
/db_xref="InterPro:IPR000943"
/db_xref="InterPro:IPR005479"
/db_xref="InterPro:IPR007127"
/db_xref="InterPro:IPR007624"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR007631"
/db_xref="InterPro:IPR009042"
/db_xref="InterPro:IPR012760"
/db_xref="GeneID:4555329"
/translation="MKSTTKAHKQSLQKLIMAGKEKGYLTYSEINDILPEDLLTQEQV
EPIVTILEELDIAVSDIVPDADTLVVESGAKAQSTSAEAAIAALAALDSEFGRTTDPV
RMYMREMGVVDLLEQEDEIRIAKEIEAGVFEIMKGITLYPVITDFFFKAHTRLEEGKC
KMTDVIIGYQGDTEDFAVKKAAFDAGKFDNDEEHEDMEYTGPDENQVYNRFETISKCS
KTYNETNEKLGFRHKKTIEMRQQLSQSLSDLRLAPKLVNTMIEVICNRVEQVKKQEKT
IQNKCLDAGMNRLYFFESFSKNETNFDWLSAIKLDEKTEEKLKVSKDEIYYAQKNLQQ
FEEEMQLTITELKTLNKMYRRGDRRAKKAKSQMIEANLRLVISIAKKYANRGLQFLDL
IQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK
LNRVRRQLLQKFGREASPEELATEMELPEYKIIKILKISKEPLSMETPVGDDEDSNIG
DFIEDTNLSSPVEITTKESLRETTSELLSNLSPREAKVLKMRFGIDMNTDHTLEEVGR
QFDVTRERIRQIEAKALRKLRHPSRAHKLQSFLE"
misc_feature complement(127827..129626)
/locus_tag="Rmag_0108"
/note="RNA polymerase sigma factor RpoD; Validated;
Region: PRK05658"
/db_xref="CDD:180186"
misc_feature complement(129411..129596)
/locus_tag="Rmag_0108"
/note="Sigma-70 factor, region 1.1; Region: Sigma70_r1_1;
pfam03979"
/db_xref="CDD:112778"
misc_feature complement(129225..129332)
/locus_tag="Rmag_0108"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature complement(128619..129206)
/locus_tag="Rmag_0108"
/note="Sigma-70, non-essential region; Region:
Sigma70_ner; pfam04546"
/db_xref="CDD:203043"
misc_feature complement(128316..128528)
/locus_tag="Rmag_0108"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(128058..128291)
/locus_tag="Rmag_0108"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature complement(127866..128042)
/locus_tag="Rmag_0108"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(127878..127880,127884..127889,
127893..127901,127905..127910,127914..127916,
127944..127949,127977..127979,128007..128009))
/locus_tag="Rmag_0108"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(129728..130681)
/locus_tag="Rmag_0109"
/db_xref="GeneID:4555330"
CDS complement(129728..130681)
/locus_tag="Rmag_0109"
/EC_number="2.7.6.1"
/note="KEGG: tbd:Tbd_0387 ribose-phosphate
pyrophosphokinase;
TIGRFAM: ribose-phosphate pyrophosphokinase;
PFAM: phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="ribose-phosphate pyrophosphokinase"
/protein_id="YP_903376.1"
/db_xref="GI:118602161"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR000842"
/db_xref="InterPro:IPR002375"
/db_xref="InterPro:IPR005946"
/db_xref="GeneID:4555330"
/translation="MSLEKIKIFSGNANPELSGEIISNLNVVQGKALVGRFSDGESQV
EILENVRGCDVFIIQPTCGPSPAETLMELLVIVDALKRSSATRITAVVPYFGYSRQDR
RSRLTRVPITAKLAAKMVESAGVDRILTVDLHADQIQGFFNIPIDNIYAQPVLIEDIL
SKNYQDIVVVSPDVGGVIRARAAAKRLFDADLAIIDKRRPAPNMVKIMNVIGDVEGRT
CILIDDMVDTAGTLCQAAGILKQRGAKKVVAYTTHAVLSGNAIHNIRSSELNKLVTTN
TIPLNADATNCSKIRQLSIAPTMAEVIKRISEEQSISTIFT"
misc_feature complement(129734..130666)
/locus_tag="Rmag_0109"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:179265"
misc_feature complement(130310..130666)
/locus_tag="Rmag_0109"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:205966"
misc_feature complement(129851..130225)
/locus_tag="Rmag_0109"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(129917..129919,129989..130003,
130007..130015,130157..130159,130163..130165))
/locus_tag="Rmag_0109"
/note="active site"
/db_xref="CDD:206754"
gene complement(130754..130828)
/locus_tag="Rmag_R0006"
/note="tRNA-Gln1"
/db_xref="GeneID:4555579"
tRNA complement(130754..130828)
/locus_tag="Rmag_R0006"
/product="tRNA-Gln"
/db_xref="GeneID:4555579"
gene complement(130808..131665)
/gene="ipk"
/locus_tag="Rmag_0110"
/db_xref="GeneID:4555331"
CDS complement(130808..131665)
/gene="ipk"
/locus_tag="Rmag_0110"
/EC_number="2.7.1.148"
/note="An essential enzyme in the nonmevalonate pathway of
isopentenyl diphosphate and dimethylallyl diphosphate
biosynthesis"
/codon_start=1
/transl_table=11
/product="4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase"
/protein_id="YP_903377.1"
/db_xref="GI:118602162"
/db_xref="InterPro:IPR004424"
/db_xref="InterPro:IPR006204"
/db_xref="GeneID:4555331"
/translation="MSSTWLAPAKINLFLHINNKREDGYHNLQTIFQMLDYYDELKFS
ITNGGVIKRINGNEDVEQSQDLIVKAAKVLQEYTGTTLGANLSIVKNIPIGGGLGGGS
SDAATTLVALNQLWDTKLTQPQLMKLGLNLGADVPVFIFAKSAWAEGIGEILSPIKMP
NYYYLVVFINKHTSTKEIFSHYALTMSKPQGKIAKFSELINTHNDCLQAAIALEAEIG
VALKHLNTCANHISQVRMSGTGSCVFNEFLTEKDALAAAKKVPKKWMSFVTRAINTSP
IHSWAVAKR"
misc_feature complement(130850..131665)
/gene="ipk"
/locus_tag="Rmag_0110"
/note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional; Region: ipk; PRK00343"
/db_xref="CDD:178981"
misc_feature complement(131243..131410)
/gene="ipk"
/locus_tag="Rmag_0110"
/note="GHMP kinases N terminal domain; Region:
GHMP_kinases_N; pfam00288"
/db_xref="CDD:201132"
gene complement(131658..132200)
/locus_tag="Rmag_0111"
/db_xref="GeneID:4555332"
CDS complement(131658..132200)
/locus_tag="Rmag_0111"
/note="3'-5' exoribonuclease specific for small
oligoribonuclotides"
/codon_start=1
/transl_table=11
/product="oligoribonuclease"
/protein_id="YP_903378.1"
/db_xref="GI:118602163"
/db_xref="InterPro:IPR006055"
/db_xref="InterPro:IPR013520"
/db_xref="GeneID:4555332"
/translation="MNKKTNLIWIDLEMTGLIPEKDVIIEIATIVTNVQLHIIAQGPS
LVIHQNDEILSNMDQWNTEHHTSSGLLRRVRESSLSCKQAEAQTLEFLKKYVHTGASP
MCGNTICQDRRFLYNYMPTLERFFHYRHIDVSTLKELVIRWKPNAKMIFEKDSAHLAL
SDIQDSIDELKHYRNVFINV"
misc_feature complement(131667..132182)
/locus_tag="Rmag_0111"
/note="DEDDh 3'-5' exonuclease domain of oligoribonuclease
and similar proteins; Region: Orn; cd06135"
/db_xref="CDD:99838"
misc_feature complement(order(131715..131717,131730..131732,
131868..131876,131880..131885,132153..132155,
132159..132170))
/locus_tag="Rmag_0111"
/note="putative active site [active]"
/db_xref="CDD:99838"
misc_feature complement(order(131715..131717,131730..131732,
131871..131876,131880..131885,132153..132155,
132159..132170))
/locus_tag="Rmag_0111"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:99838"
misc_feature complement(order(131715..131717,131730..131732,
131868..131870,132162..132164,132168..132170))
/locus_tag="Rmag_0111"
/note="catalytic site [active]"
/db_xref="CDD:99838"
misc_feature complement(order(131667..131672,131676..131678,
131769..131774,131787..131789,131796..131798,
131805..131807,131811..131816,131853..131855,
131862..131864,131871..131876,132099..132101))
/locus_tag="Rmag_0111"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99838"
gene complement(132215..133234)
/gene="trpD"
/locus_tag="Rmag_0112"
/db_xref="GeneID:4555519"
CDS complement(132215..133234)
/gene="trpD"
/locus_tag="Rmag_0112"
/EC_number="2.4.2.18"
/note="Catalyzes the conversion of
N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to
anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate"
/codon_start=1
/transl_table=11
/product="anthranilate phosphoribosyltransferase"
/protein_id="YP_903379.1"
/db_xref="GI:118602164"
/db_xref="InterPro:IPR000312"
/db_xref="InterPro:IPR005940"
/db_xref="GeneID:4555519"
/translation="MNIQQAIKQIIKKQDLSENEMHKVMNDIMTGKTTDAQIGGFLVG
LAIKGESVDEITAAAKTMRSLVKSVTIKNTKHLVDTCGTGGDGLGLFNISTACTFVVA
AAGGSVAKHGNSSISSKSGSADVLKAAGVNLDMSVEKISKCIEKIGIGFMFAPFHHIA
MKHVIEPRKDLAIKTIFNVLGPLTNPAKVPNQVMGVYAQSLVEPIAYVLKNLGSKHVI
VVHSKDGLDEISIADDTFVAELKNGQVSTYTINPADFSLPLGNLNDIKANNADYSLVL
IQQALDGKDGVAKNIIALNSGAAIYVCGLANSLQKGVNKALNILNSDVAHQKLDDFVR
ESTDC"
misc_feature complement(132227..133192)
/gene="trpD"
/locus_tag="Rmag_0112"
/note="anthranilate phosphoribosyltransferase;
Provisional; Region: trpD; PRK00188"
/db_xref="CDD:178920"
misc_feature complement(133043..133192)
/gene="trpD"
/locus_tag="Rmag_0112"
/note="Glycosyl transferase family, helical bundle domain;
Region: Glycos_trans_3N; pfam02885"
/db_xref="CDD:145834"
misc_feature complement(132269..132964)
/gene="trpD"
/locus_tag="Rmag_0112"
/note="Glycosyl transferase family, a/b domain; Region:
Glycos_transf_3; pfam00591"
/db_xref="CDD:144256"
gene complement(133242..134456)
/locus_tag="Rmag_0113"
/db_xref="GeneID:4555520"
CDS complement(133242..134456)
/locus_tag="Rmag_0113"
/note="PFAM: peptidase M24; peptidase M24B, X-Pro
dipeptidase/aminopeptidase domain protein;
KEGG: aci:ACIAD1126 aminopeptidase P"
/codon_start=1
/transl_table=11
/product="peptidase M24"
/protein_id="YP_903380.1"
/db_xref="GI:118602165"
/db_xref="InterPro:IPR000994"
/db_xref="InterPro:IPR001131"
/db_xref="InterPro:IPR007865"
/db_xref="GeneID:4555520"
/translation="MIHQKRRHALLNELDDNAIVLVSTNPEKNRSGDVNYPFRVHSDF
YYLTGFQEPEALAVFSKENYTIFLRPKDKIREIWDGKRLGIDDAPNTLKSNHAFSIDL
LKEKLPQIILNNQVYFDTKTCQLDNDISRLLSNHQLKSLAPTLHEMRLIKDMLEINIM
QKAANISIKAHQLAMQTIQPNMFEFEVQSIFDGYFTKNNAQHAYTPIIAGGENACILH
YIENNKKLNKNDLILIDAGAEVDCYASDITRTFPVNGQFSRAQKQIYQIVLDAQINAI
NVIKPGVKINEPHKVATNIIKQGLINLGILKTGADLSQFYMHGTGHWLGLDVHDVGQY
KKDDHHRKFVAGMITTVEPGIYIRKNDKISPIYHNIGIRIEDDVLVTTSGNTVLTKSL
AKEINEIESLMS"
misc_feature complement(134100..134453)
/locus_tag="Rmag_0113"
/note="Aminopeptidase P, N-terminal domain; Region: AMP_N;
pfam05195"
/db_xref="CDD:203201"
misc_feature complement(133245..134450)
/locus_tag="Rmag_0113"
/note="proline aminopeptidase P II; Provisional; Region:
PRK10879"
/db_xref="CDD:182804"
misc_feature complement(133287..133988)
/locus_tag="Rmag_0113"
/note="Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase. Catalyses
hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on...; Region:
Prolidase; cd01087"
/db_xref="CDD:29972"
misc_feature complement(order(133332..133334,133401..133403,
133491..133493,133719..133721,133752..133754,
133803..133805))
/locus_tag="Rmag_0113"
/note="active site"
/db_xref="CDD:29972"
gene complement(135125..135394)
/locus_tag="Rmag_0114"
/db_xref="GeneID:4555521"
CDS complement(135125..135394)
/locus_tag="Rmag_0114"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903381.1"
/db_xref="GI:118602166"
/db_xref="GeneID:4555521"
/translation="MIKLAWWCVTNTNNQAEIGRFLLTKNLCVNAEVGKDIAHYLLEF
LPFTQNIEQLIDSTNLILQKDLINKEEKTKLWKQGQKNSNFGWFY"
gene complement(135363..135722)
/locus_tag="Rmag_0115"
/db_xref="GeneID:4555522"
CDS complement(135363..135722)
/locus_tag="Rmag_0115"
/note="KEGG: tbd:Tbd_2558 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903382.1"
/db_xref="GI:118602167"
/db_xref="InterPro:IPR002491"
/db_xref="GeneID:4555522"
/translation="MLSTEDILKLNVLIATSVAIRIDTYKLVVVGLNAKFKEQVIDLN
PTGDSDVYIKAVKKLLINQILGAMGGYISYLKRWSRIVEVASSNLALLLKLGEVEAVV
AVSNTTNFDKTGLVVCY"
gene complement(135981..136841)
/locus_tag="Rmag_0116"
/db_xref="GeneID:4555523"
CDS complement(135981..136841)
/locus_tag="Rmag_0116"
/EC_number="1.5.1.2"
/note="KEGG: tcx:Tcr_1837 pyrroline-5-carboxylate
reductase;
TIGRFAM: pyrroline-5-carboxylate reductase;
PFAM: NADP oxidoreductase, coenzyme F420-dependent;
NAD-dependent glycerol-3-phosphate dehydrogenase domain
protein"
/codon_start=1
/transl_table=11
/product="pyrroline-5-carboxylate reductase"
/protein_id="YP_903383.1"
/db_xref="GI:118602168"
/db_xref="InterPro:IPR000304"
/db_xref="InterPro:IPR004455"
/db_xref="InterPro:IPR011128"
/db_xref="GeneID:4555523"
/translation="MYIILFFQIFVMQNSLIGFIGAGNMAYAIISGLINNGIKHNQIK
ISDTNKALLSLRKTEFNLEVFTDNTKLAIQCNVIVLAVKPQVLSSVCKDLKNKLAINT
LIISIAAGVRSRDIERWLGDNQAIVRTMPNMPALLNQGITGLFANKQVSDKQKSLAEN
ILNSVGECLWVNDEGLLDVITAVSGSGPAYFFLMLESMTKVGAALGLDEAVAQKLSIQ
TALGASIVASSSEDSPQQLRNKVTSKNGTTQAAIESFQDQDFEVIIAHAMRAAFNRAN
EIGMELGNDK"
misc_feature complement(136005..136799)
/locus_tag="Rmag_0116"
/note="pyrroline-5-carboxylate reductase; Region:
PLN02688"
/db_xref="CDD:178291"
misc_feature complement(136005..136793)
/locus_tag="Rmag_0116"
/note="pyrroline-5-carboxylate reductase; Reviewed;
Region: PRK11880"
/db_xref="CDD:183357"
gene 136881..137549
/locus_tag="Rmag_0117"
/db_xref="GeneID:4555524"
CDS 136881..137549
/locus_tag="Rmag_0117"
/EC_number="3.1.3.18"
/note="catalyzes the dephosphorylation of
2-phosphoglycolate to form glycolate and phosphate"
/codon_start=1
/transl_table=11
/product="phosphoglycolate phosphatase"
/protein_id="YP_903384.1"
/db_xref="GI:118602169"
/db_xref="InterPro:IPR005833"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006346"
/db_xref="InterPro:IPR006439"
/db_xref="GeneID:4555524"
/translation="MKIFNPKLIMIDVDGTLVDSAPDLAYCIDELMKVMNRTPWGEAK
VRHWVGNGVPKLVERSLTGEFEANVNKQDFNKAYPIFLELYSVNTSTRSCLYSGVKEG
LNYLKQQGYILGCVTNKAKQFTLPILKDLDIFNYFRLVVSGDTLAKKKPDPLPLLHSA
EFFNINPQDCLMLGDSISDVAASRAAGFEIICMSYGYNHGEDIQNANPDLVIDSMAEL
KDYL"
misc_feature 136881..137546
/locus_tag="Rmag_0117"
/note="phosphoglycolate phosphatase; Provisional; Region:
PRK13222"
/db_xref="CDD:183901"
misc_feature 137163..137459
/locus_tag="Rmag_0117"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 137229..137231
/locus_tag="Rmag_0117"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 137574..138812
/locus_tag="Rmag_0118"
/db_xref="GeneID:4555525"
CDS 137574..138812
/locus_tag="Rmag_0118"
/EC_number="2.6.1.-"
/note="TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate
aminotransferase;
PFAM: aminotransferase class-III;
KEGG: hin:HI1554
adenosylmethionine--8-amino-7-oxononanoate transaminase"
/codon_start=1
/transl_table=11
/product="aminotransferase"
/protein_id="YP_903385.1"
/db_xref="GI:118602170"
/db_xref="InterPro:IPR005814"
/db_xref="InterPro:IPR005815"
/db_xref="GeneID:4555525"
/translation="MNTFDNQHIWHPYAKIPNEVPAYLVESAKGVYLTLEGGKRVIDG
MSSWWSAIHGYNHPVLNKAIETQLGKMSHVMFGGLTHQPVIELTKTLLKITPDNLTKI
FFTDSGSVSVEVALKMALQYWHNKRQANKKKFITILGGYHGDTFGAMSVCDPDNGMHH
LFSSVLSQHFFVKSPSIVSMDEALADLEIILEQDANSIAAMILEPVVQNAGGMRIYNP
QYLLKAKALCKQYHVLFILDEIATGFGRTGQLFALEHVNVKPDILCLGKALTGGYMTL
AATLTTNGVSSVVGTLMHGPTFMANPLACAVANASIELLLNSPWQKNIANIEKILNAE
LLSLQKHTQVKYVRILGAIGAIELIHEIDIQIIQKHLITLGVWLRPYGKLLYTMPPFI
ITDSELLVITNAIKTIVSGL"
misc_feature 137583..138767
/locus_tag="Rmag_0118"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature 137598..138803
/locus_tag="Rmag_0118"
/note="adenosylmethionine-8-amino-7-oxononanoate
transaminase; Region: bioA; TIGR00508"
/db_xref="CDD:200023"
misc_feature order(137892..137900,137994..137999,138003..138005,
138183..138185,138285..138287,138291..138296,
138372..138374)
/locus_tag="Rmag_0118"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(137895..137900,137994..137999,138183..138185,
138285..138287,138294..138296,138372..138374)
/locus_tag="Rmag_0118"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 138372..138374
/locus_tag="Rmag_0118"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene complement(138971..139252)
/locus_tag="Rmag_0119"
/pseudo
/db_xref="GeneID:4555469"
gene complement(140171..142135)
/locus_tag="Rmag_0120"
/db_xref="GeneID:4555526"
CDS complement(140171..142135)
/locus_tag="Rmag_0120"
/note="TIGRFAM: primosomal protein N';
PFAM: helicase domain protein; type III restriction
enzyme, res subunit; DEAD/DEAH box helicase domain
protein;
KEGG: cbu:CBU_1815 primosomal protein N'"
/codon_start=1
/transl_table=11
/product="primosomal protein N'"
/protein_id="YP_903386.1"
/db_xref="GI:118602171"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR005259"
/db_xref="InterPro:IPR006935"
/db_xref="InterPro:IPR011545"
/db_xref="GeneID:4555526"
/translation="MSLIVEVAIPIPLNKTFDYLCDDEVLVGVRVKVPFVRKKVIGIV
LAIRDKSNFYKLKSVEEVLDKTPILDKLTLSLLFWSANYYHHPIGEVISTALPKNLRL
GKKANIKKITGLPNQTKQSNFKLSDEQNIAITQILKSNYQYHAFLLHGVTGSGKTEVY
LHTTQAMLNQKKQVLVLVPEIGLTPQMITRFESRLKTRVVTIHSQLNETKKLDAYLMA
KNGEAGVVIGTRSAIFSPMPNLGLIIIDEEHDNSFKQQSNFRYCAKNLSFIRAKQANI
PIVLGTATPSLELLKNVMDQKITRITLTKRTGNATLPKISLIDMRSNTDGALSKMLIE
KTKQYLSAGKQVMLFINRRGYAPVYYCTQCSWKAQCDHCDSTMVYHRHINRLKCHHCG
GEKMPEHTCPDCFRQSLKVLGYGTERLEETLSSYFADTPIIRIDRDTTRRKKAFTRHL
EQINAGKSCIIIGTQMLAKGHDFSNLAMVGILDIDTGFLSLNFRATEYLAQLLIQVSG
RAGRHKEKGEVVIQTRYPDHPIFNFILSSHYTQFANQLLKQRLSAMMPPFSHQALLCA
NAKNKQNAENFLHEAVVLLKNIQINSVEILGPVINTIEKKSDYYYFNLYLQSNNRVTL
HQMLSTFNQHINILKLKNKVRWYLDIDPIE"
misc_feature complement(140174..142135)
/locus_tag="Rmag_0120"
/note="primosome assembly protein PriA; Validated; Region:
PRK05580"
/db_xref="CDD:180144"
misc_feature complement(141281..141700)
/locus_tag="Rmag_0120"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(141665..141679)
/locus_tag="Rmag_0120"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(141389..141400)
/locus_tag="Rmag_0120"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(140594..>140788)
/locus_tag="Rmag_0120"
/note="helicase superfamily c-terminal domain; Region:
HELICc; smart00490"
/db_xref="CDD:197757"
gene 142200..142637
/locus_tag="Rmag_0121"
/db_xref="GeneID:4555527"
CDS 142200..142637
/locus_tag="Rmag_0121"
/note="PFAM: protein of unknown function UPF0054;
KEGG: pae:PA3982 conserved hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903387.1"
/db_xref="GI:118602172"
/db_xref="InterPro:IPR002036"
/db_xref="GeneID:4555527"
/translation="MVVIQNIIHDSSINEYDLSNTLQEVIKELDRGESELLIRLVNET
EIKNLNKVYRHQDKLTNVLSFQSDLPIEIDEAVLGDVVICTQVVLKESIEQHKSFNNH
LTHMAIHGMLHLLGYDHIDTKDAQQMENLEIKILAKIGINNPY"
misc_feature 142203..142619
/locus_tag="Rmag_0121"
/note="Uncharacterized protein family UPF0054; Region:
UPF0054; pfam02130"
/db_xref="CDD:202122"
gene complement(142684..143856)
/locus_tag="Rmag_0122"
/db_xref="GeneID:4555528"
CDS complement(142684..143856)
/locus_tag="Rmag_0122"
/note="TIGRFAM: tRNA(Ile)-lysidine synthetase;
tRNA(Ile)-lysidine synthetase-like;
PFAM: PP-loop domain protein;
KEGG: cbu:CBU_1509 mesJ protein"
/codon_start=1
/transl_table=11
/product="tRNA(Ile)-lysidine synthetase"
/protein_id="YP_903388.1"
/db_xref="GI:118602173"
/db_xref="InterPro:IPR011063"
/db_xref="InterPro:IPR012795"
/db_xref="InterPro:IPR012796"
/db_xref="GeneID:4555528"
/translation="MENLKTKDLFLKDKQIVLGLSGGIDSVVLLYYLNTHYPNKTRVI
HYNHHLSQYCNEWNKFCEKLCLSLNITYLSIDLYFNNTSNIEENTRKKRYHSLSNSLK
KNEVLCTAHHQNDQAETLLLQLFRGSGIKGLAAMPKEKPLGMGIHYRPFLTISKFQII
DYAKNNKLNWIEDDSNKNTNFMRNFLRLEILPKLSGAYKNLTRTLARSAKHQSEALKL
IRELADIDMNTYHIINNANRIDTNRLIKLETHRIKNVLRHHLNLLNFLTPSDKIMHQI
IELLYTKENTNPLVCWDKYEIRRYQNELYFINKTLPRKNAFCPFYKELKNFKNFSIRY
RQEGQRIKLLGKTHTQSLKKVLQEANIPPWERNRLKMYYIDNKLCAIERIGKISNI"
misc_feature complement(142717..143820)
/locus_tag="Rmag_0122"
/note="tRNA(Ile)-lysidine synthetase; Provisional; Region:
tilS; PRK10660"
/db_xref="CDD:182626"
misc_feature complement(143281..143814)
/locus_tag="Rmag_0122"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:30179"
misc_feature complement(order(143716..143718,143722..143724,
143779..143790,143794..143802))
/locus_tag="Rmag_0122"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30179"
misc_feature complement(142939..143142)
/locus_tag="Rmag_0122"
/note="TilS substrate binding domain; Region: TilS;
pfam09179"
/db_xref="CDD:204159"
misc_feature complement(<142702..142866)
/locus_tag="Rmag_0122"
/note="TilS substrate C-terminal domain; Region: TilS_C;
pfam11734"
/db_xref="CDD:204723"
gene complement(143837..144787)
/locus_tag="Rmag_0123"
/db_xref="GeneID:4555529"
CDS complement(143837..144787)
/locus_tag="Rmag_0123"
/note="catalyzes the carboxylation of acetyl-CoA to
malonyl-CoA; forms a tetramer composed of two alpha (AccA)
and two beta (AccD) subunits; one of the two catalytic
subunits that can form the acetyl CoA carboxylase enzyme
together with a carrier protein"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase carboxyltransferase
subunit alpha"
/protein_id="YP_903389.1"
/db_xref="GI:118602174"
/db_xref="InterPro:IPR001095"
/db_xref="InterPro:IPR011763"
/db_xref="GeneID:4555529"
/translation="MNLDYLDFEQPIVELEEKIQALDNIKDKADIVDEMGALKIKSNA
LTKKIFSSLSDWQISQLARHPKRLYTLDYISHVFDEFTELHGDRIYGDDHAIIGGIAR
LDAQPVMFIGQQKGRTTQEKLKYNFGMPRPEGYRKALRLMKLSEKFSMPIITFIDTPG
AYPGIGAEERGQSEAIAKNLFEMSTLATPIISVVIGEGGSGGALAIGVADIIMMFKYS
IYSVISPEGCASILYKDATKANLAAESLKLTSAHLKENGLIDIIIDEPLGGIHRDPSQ
AKVLLKEALIQQLNEIKQLPIEQLLQNRQEKLLNFGKFKD"
misc_feature complement(143840..144787)
/locus_tag="Rmag_0123"
/note="acetyl-CoA carboxylase carboxyltransferase subunit
alpha; Validated; Region: PRK05724"
/db_xref="CDD:180223"
misc_feature complement(143840..144787)
/locus_tag="Rmag_0123"
/note="acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional; Region: accA; CHL00198"
/db_xref="CDD:164574"
gene 145278..145955
/locus_tag="Rmag_0124"
/db_xref="GeneID:4555530"
CDS 145278..145955
/locus_tag="Rmag_0124"
/note="PFAM: protein of unknown function DUF47;
KEGG: pae:PA5208 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903390.1"
/db_xref="GI:118602175"
/db_xref="InterPro:IPR002727"
/db_xref="GeneID:4555530"
/translation="MAKNIIDGLFGKSPISPLQKHMTQVHSCILELNGFMVAIHVQNW
AQAEKIRSDIGAKEGEADILKKKLRLSLPSTFMMPFSRRDLLDLLLIQDSIANITKDV
SGLMINRKMALPDEIFDDVIELTKVCIKTSSMALKAVNELDELLETAFGSRERKVIGS
IIKDVNKLESKSDKIQYEIRAKLFPLESSLPPVDVMFYYRAVEWLGELADAAQKVGSR
LEVLLAR"
misc_feature 145287..145952
/locus_tag="Rmag_0124"
/note="Phosphate transport regulator (distant homolog of
PhoU) [Inorganic ion transport and metabolism]; Region:
COG1392"
/db_xref="CDD:31582"
gene 145966..147246
/locus_tag="Rmag_0125"
/db_xref="GeneID:4555531"
CDS 145966..147246
/locus_tag="Rmag_0125"
/note="PFAM: phosphate transporter;
KEGG: csa:Csal_0712 phosphate transporter"
/codon_start=1
/transl_table=11
/product="phosphate transporter"
/protein_id="YP_903391.1"
/db_xref="GI:118602176"
/db_xref="InterPro:IPR001204"
/db_xref="GeneID:4555531"
/translation="MDVVVNYADIFIMLAIGFGLFMAWGIGANDVANAMGTSVGSGAI
TFRQAVVIAIVFEFAGAILAGGEVTATIRKGILDAALFTDSPHLLVYGMLASLLAAGT
WLLIASSLGWPVSTTHSIVGAIVGFGAVGVGVDAVAWDKVIKIIMSWVASPVLAGTLA
IIIFKSLQSLVIDTKDLLANAKKYLPFYVFFVGFIIALVTLFKGLKHVESLKYISKDT
SLSMMIAVTVGILAAVIAAFLMKHIKIDPKDDKDFHYANMEKLFAVLMVITASAMAFA
HGSNDVANAIAPLAAVYSIVEVGGGITSKSVVPSWILLVGGGGIVFGLVTYGFRVMKT
IGKGITELTPSRGFAAELAAATTVVLASSTGIPVSTTQVLVGAVLGVGIARGVAALNM
RVINMIFLSWLITLPAGAIMSILFFFALKGVFGA"
misc_feature 146041..>146514
/locus_tag="Rmag_0125"
/note="Phosphate transporter family; Region: PHO4;
pfam01384"
/db_xref="CDD:201762"
misc_feature <146623..147204
/locus_tag="Rmag_0125"
/note="Phosphate transporter family; Region: PHO4;
pfam01384"
/db_xref="CDD:201762"
gene 147250..147480
/locus_tag="Rmag_0126"
/db_xref="GeneID:4555532"
CDS 147250..147480
/locus_tag="Rmag_0126"
/note="PFAM: BolA family protein;
KEGG: mca:MCA0260 toluene-tolerance protein, putative"
/codon_start=1
/transl_table=11
/product="BolA family protein"
/protein_id="YP_903392.1"
/db_xref="GI:118602177"
/db_xref="InterPro:IPR002634"
/db_xref="GeneID:4555532"
/translation="MTLEEIQAKIQMGIKNSTVTMGGDGCSCSTKVVSSIFEGMPLLA
RQKMVLAVMNEEITNGTLHALSIKTRTPEEDV"
misc_feature 147271..147471
/locus_tag="Rmag_0126"
/note="BolA-like protein; Region: BolA; pfam01722"
/db_xref="CDD:201935"
gene 147921..149225
/locus_tag="Rmag_0127"
/db_xref="GeneID:4555533"
CDS 147921..149225
/locus_tag="Rmag_0127"
/note="PFAM: helicase domain protein; DEAD/DEAH box
helicase domain protein;
KEGG: tcx:Tcr_0779 DEAD/DEAH box helicase-like"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase domain-containing
protein"
/protein_id="YP_903393.1"
/db_xref="GI:118602178"
/db_xref="InterPro:IPR000629"
/db_xref="InterPro:IPR001410"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="GeneID:4555533"
/translation="MDFSKLGLSDSILKAIEQQGYREPSLIQAQAIPAILEGKDVMAA
AQTGTGKTAGFILPILEILSKCSPIKFNQVRMLILTPTRELAAQVSDSVTIYGKYLSF
KSSVVFGGVKINPQMRKLRDGVDILVATPGRLLDLYSKNAVKFDTLEIIVFDEADRML
DMGFIHDIKRILKILPQKKQTLMFSATFSNDIRILAKSLVNNPVEISVTPRNSTVKTV
KQWIHPVDKFKKQALLIYLIQEHSWYQVLVFSRTKHGANRIATQLEKKKISATVIHGN
KSQGARTRALADFKNAKVNVLVATDIAARGIDIDQLPHVVNFDLPRVPEDYVHRIGRT
GRAGSKGEAISLVSVDEAKQLFDIERLIQNKLDRIMVEGFVPEYNLPESGKKILSPKT
KKNKNYNKLKYGKNRNSKKNKLNNKKGFLDSKFNKKSTRKII"
misc_feature 147927..149036
/locus_tag="Rmag_0127"
/note="helicase 45; Provisional; Region: PTZ00424"
/db_xref="CDD:185609"
misc_feature 147927..148541
/locus_tag="Rmag_0127"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:28928"
misc_feature 148062..148076
/locus_tag="Rmag_0127"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28928"
misc_feature 148380..148391
/locus_tag="Rmag_0127"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:28928"
misc_feature 148473..148481
/locus_tag="Rmag_0127"
/note="motif III; other site"
/db_xref="CDD:28928"
misc_feature 148572..148958
/locus_tag="Rmag_0127"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(148671..148682,148740..148745,148818..148826)
/locus_tag="Rmag_0127"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(148842..148844,148905..148907,148917..148919,
148926..148928)
/locus_tag="Rmag_0127"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(149876..150919)
/locus_tag="Rmag_0128"
/db_xref="GeneID:4555534"
CDS complement(149876..150919)
/locus_tag="Rmag_0128"
/note="KEGG: gme:Gmet_2337 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903394.1"
/db_xref="GI:118602179"
/db_xref="GeneID:4555534"
/translation="MKEKKYLYIFSLLIILLIGFHFITWNLITKEFFIHKENIDVGDL
GRMSYLSKSLTLRKNKQNLPNKHIQYNDNVEIDILTIGDSFSYGKGGGNNKYYQDYIA
TTQNLKVMNIQPSGKGYIETILILSSNGILDKLNPKSIILQSVENGAVDRYAKIIDWD
IGLKNISTSFLDKKYSHSKPNPSFINNLNYNALLYSLLYKYDDNAIFSKTYITPLIKN
LFSCEDKDRLLFYYKDLESLSKSNNKSIDLLNKNLNKLQKILSEKNINLYFMPSVDKY
NLYSKYIQHNKYQQSAFFEILRPLKKEYNFIDTKMILEEMLDNNISDVYYCDDTHWSF
KASEEIFKQVRLK"
gene complement(150928..152394)
/locus_tag="Rmag_0129"
/db_xref="GeneID:4555535"
CDS complement(150928..152394)
/locus_tag="Rmag_0129"
/note="PFAM: membrane bound O-acyl transferase, MBOAT
family protein;
KEGG: bcz:BCZK0793 alginate O-acetyltransferase"
/codon_start=1
/transl_table=11
/product="membrane bound O-acyl transferase, MBOAT family
protein"
/protein_id="YP_903395.1"
/db_xref="GI:118602180"
/db_xref="InterPro:IPR004299"
/db_xref="GeneID:4555535"
/translation="MLFNSYEFIFVFLPITFFIYFYLNHKRLTEASKGFLVCSSLFFY
SWWNVAYLPIILSSMVFNYVIGRSLNKTCKNKSKGFSKKSILIFGIVFNLSLLGYFKY
TDFLIENFNLAFGSNAELLQLALPLAISFFTSQQIAYLVDSYRQETKEYDFLNYVLFV
TFFPQLIAGPIVHHKEMMPQFANTRNKVKNYRNIAMGLFIFSIGLFKKVVIADTFAVW
ATQGFDVATTLNLFEAWATSLSYTFQLYFDFSGYTDMAIGLALLFNIRLPVNFNSPYK
ATDIQDFWRRWHMTLSRFMRDYVYIPLGGNKKGKFRTYNNLMATFVIGGLWHGAGWTF
IFWGFLHGLALMVQRFWSKLGFKLWIWLAWLITFNFVNIAWVFFRAREWDDAVKVLGS
MFSLDNIVIKETFSNKLNFLSEYNIQFGEVMKMTNDGSDVIKWIIFGFILILVFKNSL
EKTNKFKSNIWHLLIHVIVLFTALTSLNTVSEFLYFNF"
misc_feature complement(151201..152388)
/locus_tag="Rmag_0129"
/note="Predicted membrane protein involved in D-alanine
export [Cell envelope biogenesis, outer membrane]; Region:
DltB; COG1696"
/db_xref="CDD:31882"
gene 152860..153246
/locus_tag="Rmag_0130"
/db_xref="GeneID:4555536"
CDS 152860..153246
/locus_tag="Rmag_0130"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903396.1"
/db_xref="GI:118602181"
/db_xref="GeneID:4555536"
/translation="MGYLLILSRKLEKKMSKPIIENNYSLTNFEYAVYRCELVSKSQT
HLVAFKNGCSEITSELDMEVASIFANLDSYININLNNILSKFLSDKTKSFVLADDELK
LLAVLRLENNSEITAKMDEYGKRKDC"
gene 153995..154440
/locus_tag="Rmag_0131"
/pseudo
/db_xref="GeneID:4555470"
gene complement(154782..155966)
/locus_tag="Rmag_0132"
/db_xref="GeneID:4555537"
CDS complement(154782..155966)
/locus_tag="Rmag_0132"
/EC_number="6.1.1.1"
/note="TIGRFAM: tyrosyl-tRNA synthetase;
PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4
domain protein;
KEGG: ftl:FTL_0968 tyrosyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="tyrosyl-tRNA synthetase"
/protein_id="YP_903397.1"
/db_xref="GI:118602182"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002305"
/db_xref="InterPro:IPR002307"
/db_xref="InterPro:IPR002942"
/db_xref="GeneID:4555537"
/translation="MEIEQALAIFTRGADETLPLDELKKKLKKSKPLRIKTGFDPTAP
DLHLGHTILINKLKQLQDLGHEILFLIGDFTAMIGDPTGKSKTRPPLSREQIQENAKS
YTKQVFKILDKDKTTVVFNSQWMDKMTSMEFIQLASKQTVAKMLEHDNFSKRYKSGQA
ISIHEFLYPLVQGNDSVELKSDVEIGGTDQKFNLLVGRELQKQAGQEQQVILTMPILE
GLDGVQKMSKSLNNYIGIDDTPDEMFGKIMSISDELMWRYFELLSFQSLKVITDLKQA
MMQGKNPRDIKFILADEIITRFHNIDTAKQMQQNFIDRFSKNQMPDEMDKFSFKAGIK
IANLLKDTGLCSSTSNAYQMINQGGAKINGKKITDKNLELETGTNIYQVGKRKFARVT
IQ"
misc_feature complement(154788..155966)
/locus_tag="Rmag_0132"
/note="tyrosyl-tRNA synthetase; Validated; Region:
PRK05912"
/db_xref="CDD:180311"
misc_feature complement(155076..155855)
/locus_tag="Rmag_0132"
/note="catalytic core domain of tyrosinyl-tRNA synthetase;
Region: TyrRS_core; cd00805"
/db_xref="CDD:173902"
misc_feature complement(order(155283..155294,155316..155321,
155397..155399,155406..155411,155415..155417,
155442..155444,155451..155453,155463..155465,
155817..155822,155826..155828,155847..155855))
/locus_tag="Rmag_0132"
/note="active site"
/db_xref="CDD:173902"
misc_feature complement(155817..155828)
/locus_tag="Rmag_0132"
/note="HIGH motif; other site"
/db_xref="CDD:173902"
misc_feature complement(order(155454..155459,155466..155471,
155475..155477,155529..155534,155538..155549,
155553..155558,155562..155570,155574..155579,
155733..155738,155745..155747))
/locus_tag="Rmag_0132"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173902"
misc_feature complement(155280..155294)
/locus_tag="Rmag_0132"
/note="KMSKS motif; other site"
/db_xref="CDD:173902"
misc_feature complement(<154827..154970)
/locus_tag="Rmag_0132"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(154842..154844,154848..154871,
154890..154892,154896..154901,154908..154913,
154917..154922,154926..154931,154965..154967))
/locus_tag="Rmag_0132"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene complement(155972..157231)
/gene="proA"
/locus_tag="Rmag_0133"
/db_xref="GeneID:4555381"
CDS complement(155972..157231)
/gene="proA"
/locus_tag="Rmag_0133"
/EC_number="1.2.1.41"
/note="Catalyzes the phosphorylation of L-glutamate during
the proline biosynthesis pathway"
/codon_start=1
/transl_table=11
/product="gamma-glutamyl phosphate reductase"
/protein_id="YP_903398.1"
/db_xref="GI:118602183"
/db_xref="InterPro:IPR000965"
/db_xref="GeneID:4555381"
/translation="MDSIKNLIVTLGENAKNAAKTLRCATTVAKNNTLINIASQIDQN
RASIFKANNQDLVNGKNKGLETTLLDRLMLDEERLNGVIESLNQIINLPDPIGEITDL
KYQPSGIQVGKMRVPLGVLGIIYESRPNVTIDAAALCLKSGNSVILRGGSEAIHSNYA
LYTCVRQGIKQAGLNENCAQLINTQNHEAVIELVKASDYVDAIIPRGGKGLVEAISNS
AKTPVIKHLNGICHTYIDKDADKKKAISIAFNAKTRRYGVCNATETLLVHACAVSRIL
PKLIAQYLTKGVELRGCKETLKLSNKIIAATEKDWNTEYLDAILSIRIVNSMSEAIKH
IDKHGSGHTESIVSENYTRSRRFITEVDSASVMINASTGFADGFEYGLGAEIGISTDK
FHVRGPVGLEGLTSQKFIVLGDGHIRQ"
misc_feature complement(155990..157207)
/gene="proA"
/locus_tag="Rmag_0133"
/note="Gamma-glutamyl phosphate reductase (GPR), aldehyde
dehydrogenase families 18 and 19; Region:
ALDH_F18-19_ProA-GPR; cd07079"
/db_xref="CDD:143398"
misc_feature complement(156008..157189)
/gene="proA"
/locus_tag="Rmag_0133"
/note="gamma-glutamyl phosphate reductase; Region: proA;
TIGR00407"
/db_xref="CDD:161862"
misc_feature complement(156455..156457)
/gene="proA"
/locus_tag="Rmag_0133"
/note="putative catalytic cysteine [active]"
/db_xref="CDD:143398"
gene complement(157219..158238)
/locus_tag="Rmag_0134"
/db_xref="GeneID:4555382"
CDS complement(157219..158238)
/locus_tag="Rmag_0134"
/EC_number="2.7.7.7"
/note="KEGG: pfl:PFL_5441 DNA polymerase III, delta
subunit;
TIGRFAM: DNA polymerase III, delta subunit;
PFAM: DNA polymerase III, delta"
/codon_start=1
/transl_table=11
/product="DNA polymerase III, delta subunit"
/protein_id="YP_903399.1"
/db_xref="GI:118602184"
/db_xref="InterPro:IPR005790"
/db_xref="InterPro:IPR010372"
/db_xref="GeneID:4555382"
/translation="MKIKPQQLNIQLVNKLDTIYFIFGAEILLIEQSLAQINKTAKKV
GFDERISFDIDANFDWNQIFREISAVSLFSPKCIIKCRLKTGKIGIKGAKALTEIAST
LPDDILLIVSTGKLDMAQQKSKWFKTLEQLGTVVQHFEMQSNHLVDWIANHMAELGLE
ANTEIAQSIAFCTEGNLTASMQEIQKLKMAYPNGKINTQEYLEQANQQSKYTVYGLID
AALFGNSNQVNKIYQTLISDTIMPIQLSNSLYLEIKSIIEMSVELIQVKNINIVLQNN
RVWNKRKPIITNILKRHSYQRLQKLLLSLGRIDRSIKGMDNLNVIDELHTLLLSLAGK
TQWTQ"
misc_feature complement(157234..158238)
/locus_tag="Rmag_0134"
/note="DNA polymerase III subunit delta; Reviewed; Region:
holA; PRK05574"
/db_xref="CDD:180139"
misc_feature complement(157675..158181)
/locus_tag="Rmag_0134"
/note="DNA polymerase III, delta subunit; Region:
DNA_pol3_delta; pfam06144"
/db_xref="CDD:203395"
gene complement(158228..158680)
/locus_tag="Rmag_0135"
/db_xref="GeneID:4555383"
CDS complement(158228..158680)
/locus_tag="Rmag_0135"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903400.1"
/db_xref="GI:118602185"
/db_xref="GeneID:4555383"
/translation="MSKINLLTTAIIIILLSSCGFHPPYKNSEINASITSSRNNAFAD
ELQKRFNQNIPQTLVVQVGTENQNQRTALYTSNNEASSYTLSLSIPIKVFNQRKKLLL
SQTFNANTYLNKMNVSQANRLQIEEGYQQLRHLIIKQLLRKLFKLNEN"
sig_peptide complement(158600..158680)
/locus_tag="Rmag_0135"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.699) with cleavage site probability 0.419 at
residue 27"
misc_feature complement(158249..158623)
/locus_tag="Rmag_0135"
/note="Lipopolysaccharide-assembly; Region: LptE; cl01125"
/db_xref="CDD:207318"
gene 158830..160752
/locus_tag="Rmag_0136"
/db_xref="GeneID:4555384"
CDS 158830..160752
/locus_tag="Rmag_0136"
/note="KEGG: mca:MCA1848 cell division protein FtsH;
TIGRFAM: ATP-dependent metalloprotease FtsH;
PFAM: peptidase M41; AAA ATPase, central domain protein;
peptidase M41, FtsH extracellular; ATPase associated with
various cellular activities, AAA_5;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="ATP-dependent metalloprotease FtsH"
/protein_id="YP_903401.1"
/db_xref="GI:118602186"
/db_xref="InterPro:IPR000642"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR003960"
/db_xref="InterPro:IPR005936"
/db_xref="InterPro:IPR011546"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:4555384"
/translation="MFKNLLLWLVLGSVLTSIFSQFQVGDQKDDITYSQFIQSVNQGD
VSQVTIAGSNITGVGVGGEQFSTYSPGDLGLMGDLLNNGVNVVAKPPEKDGFFKQLII
SLAPILLLIGVVLYTMKGAGGAMGGKNPMSFGKSKARLITKDESDTTFDDVAGVDEAK
DDVSELVDFLSNPGKFTKVGGKIPKGVLLVGPPGTGKTLLAKAIAGEADVPFFFISGS
DFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQ
MLVEMDGFEGSEGVIVIAATNRPDVLDPALLRPGRFDRQVMVDLPDINGRDAILKIHM
RKLPIAKNVKSINIAKGTPGFSGADLANLTNEAALIAAGKGKKLVGMQEFEKAKDKIM
MGSERKSMAMDETEKEMIAYHEAGHAIVGRLVPEHDPVYKVSIIPRGRALGVTMFLPE
KDSYSISKRKLNSQVASLFGGRIAEELIYGTDNVTTGASNDIERVTEIAHKMVKQWGM
SETLGPLAYGEEEGEVFLGRQVTKHKHVSEDTFKVIDVEIRKIIDSNYQMASKILKDN
KDILIEMSKALIEFETIDKEQIDDLMDRKPIRESAVIVDSDVASIELGSGVELNNGNK
DSDEKPLSGGTTEQVA"
sig_peptide 158830..158907
/locus_tag="Rmag_0136"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.985) with cleavage site probability 0.753 at
residue 26"
misc_feature 158878..>159030
/locus_tag="Rmag_0136"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:203464"
misc_feature 159220..160608
/locus_tag="Rmag_0136"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:162266"
misc_feature 159379..159789
/locus_tag="Rmag_0136"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 159400..159423
/locus_tag="Rmag_0136"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(159403..159426,159577..159579,159718..159720)
/locus_tag="Rmag_0136"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 159565..159582
/locus_tag="Rmag_0136"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 159760..159762
/locus_tag="Rmag_0136"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 159970..160602
/locus_tag="Rmag_0136"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene 160794..161594
/locus_tag="Rmag_0137"
/db_xref="GeneID:4555385"
CDS 160794..161594
/locus_tag="Rmag_0137"
/EC_number="2.5.1.15"
/note="KEGG: cps:CPS_3451 dihydropteroate synthase;
TIGRFAM: dihydropteroate synthase;
PFAM: dihydropteroate synthase, DHPS"
/codon_start=1
/transl_table=11
/product="dihydropteroate synthase"
/protein_id="YP_903402.1"
/db_xref="GI:118602187"
/db_xref="InterPro:IPR000489"
/db_xref="InterPro:IPR006390"
/db_xref="GeneID:4555385"
/translation="MQSTNAMIMGVLNITPDSFSDGGQYLAIDKAINQAQLMIEQGAD
MIDIGGESSRPNAPKVSTDDEASRVIPVIKVLSKLISVPISIDTAKAKIMQLAIEAGA
SMINDVRALQAKSSLEVAASTGKDVCLMHMQGNSKTMQNNPVYINVIDEIKYFFDQRV
EACINAGINQNKIILDPGFGFGKTFNHNLEILRSLDEFKSFGLRILVGMSRKSMVGSM
LNSRNINGRVIGSVTTAIIASQNGADIVRVHDVLETKDAFKVLQSVAG"
misc_feature 160809..161579
/locus_tag="Rmag_0137"
/note="DHPS subgroup of Pterin binding enzymes. DHPS
(dihydropteroate synthase), a functional homodimer,
catalyzes the condensation of p-aminobenzoic acid (pABA)
in the de novo biosynthesis of folate, which is an
essential cofactor in both nucleic acid and...; Region:
DHPS; cd00739"
/db_xref="CDD:29545"
misc_feature 160812..161585
/locus_tag="Rmag_0137"
/note="dihydropteroate synthase; Region: DHPS; TIGR01496"
/db_xref="CDD:162390"
misc_feature order(160830..160832,161052..161054,161109..161111,
161115..161117,161181..161183,161319..161321,
161415..161417,161427..161429,161532..161534,
161538..161540)
/locus_tag="Rmag_0137"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29545"
misc_feature order(161358..161360,161370..161375,161490..161492,
161502..161504,161514..161516,161559..161564)
/locus_tag="Rmag_0137"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29545"
misc_feature 161421..161429
/locus_tag="Rmag_0137"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:29545"
gene 161599..162924
/gene="glmM"
/locus_tag="Rmag_0138"
/db_xref="GeneID:4555386"
CDS 161599..162924
/gene="glmM"
/locus_tag="Rmag_0138"
/EC_number="5.4.2.10"
/note="catalyzes the conversion of glucosamine-6-phosphate
to glucosamine-1-phosphate"
/codon_start=1
/transl_table=11
/product="phosphoglucosamine mutase"
/protein_id="YP_903403.1"
/db_xref="GI:118602188"
/db_xref="InterPro:IPR005841"
/db_xref="InterPro:IPR005843"
/db_xref="InterPro:IPR005844"
/db_xref="InterPro:IPR005845"
/db_xref="InterPro:IPR005846"
/db_xref="InterPro:IPR006352"
/db_xref="GeneID:4555386"
/translation="MDNYFGTDGMRGKVGVEPITADFFLKLGWAVGSVLAKRAKASVI
IGKDTRVSGYLFESALEAGFLSAGVDVGLLGPMPTPAVAYLTQTYNASAGVVISASHN
NFQDNGVKFFSAKGLKLSSQYQSEIEKKLAETMISVGADKIGKAYRYEQPLGRYIEFC
KSTFDRTQSLLGLNIVIDCANGATYHIAQSVFSELGANINIINNTPDGFNINEHCGAT
DTKYLQQVVLESKADLGIAFDGDGDRLIMIDENGELVDGDELVFIIAKAWQSQGRLVN
NTVVGTKMSNLGMHHALRDLDIKFIEADVGDRFVMEKMQKSGSILGGEGSGHIICLNK
TTSGDGIISALQVLEVLVKSQSSLAKLKQSMEKYPQILINVKTQARINLKNYTKLQRT
QLAVEQTLGDESRVLIRVSGTEPLIRVMVEAKDKIIAQQGAEKLSNIFK"
misc_feature 161608..162921
/gene="glmM"
/locus_tag="Rmag_0138"
/note="phosphoglucosamine mutase; Provisional; Region:
glmM; PRK10887"
/db_xref="CDD:182812"
misc_feature 161608..162909
/gene="glmM"
/locus_tag="Rmag_0138"
/note="GlmM is a bacterial phosphoglucosamine mutase
(PNGM) that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in the
biosynthetic pathway of...; Region: GlmM; cd05802"
/db_xref="CDD:100095"
misc_feature order(161614..161616,161620..161622,161629..161631,
161896..161904,161926..161928,162313..162315,
162319..162321,162325..162330,162448..162450,
162511..162519,162568..162570,162574..162576,
162580..162582,162823..162825,162829..162837,
162850..162852)
/gene="glmM"
/locus_tag="Rmag_0138"
/note="active site"
/db_xref="CDD:100095"
misc_feature order(161620..161622,161896..161898,162328..162330,
162448..162450,162511..162513,162517..162519,
162568..162570,162574..162576,162580..162582,
162823..162825,162829..162837,162850..162852)
/gene="glmM"
/locus_tag="Rmag_0138"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100095"
misc_feature order(161896..161898,162313..162315,162319..162321,
162325..162327)
/gene="glmM"
/locus_tag="Rmag_0138"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100095"
gene 165052..165627
/locus_tag="Rmag_0139"
/db_xref="GeneID:4555387"
CDS 165052..165627
/locus_tag="Rmag_0139"
/note="TIGRFAM: electron transport complex, RnfABCDGE
type, A subunit;
PFAM: RnfA-Nqr electron transport subunit;
KEGG: noc:Noc_0970 electron transport complex, RnfABCDGE
type, A subunit"
/codon_start=1
/transl_table=11
/product="electron transport complex, RnfABCDGE type, A
subunit"
/protein_id="YP_903404.1"
/db_xref="GI:118602189"
/db_xref="InterPro:IPR003667"
/db_xref="InterPro:IPR011293"
/db_xref="GeneID:4555387"
/translation="MNEYVLILVSTILVNNFVLVKFLGLCPFMGVSKKIDTAIGMGFA
TTFVLTLASIFSYLINTYILLPFEIEYLRTISFIVTIAGVVGFTELVVNKTSPILHQS
LGVFLPLITTNCAVLGVALLNVNQDNGFLASGVYGFGAAIGFSFVLVLFSAMRERIDV
VDVPEAFKGTPVALITAGLMSMAFMGFIGLV"
misc_feature 165052..165624
/locus_tag="Rmag_0139"
/note="electron transport complex protein RsxA;
Provisional; Region: PRK05151"
/db_xref="CDD:179946"
gene 165614..166153
/locus_tag="Rmag_0140"
/db_xref="GeneID:4555388"
CDS 165614..166153
/locus_tag="Rmag_0140"
/note="TIGRFAM: electron transport complex, RnfABCDGE
type, B subunit;
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein; Fe-S cluster domain protein;
KEGG: tbd:Tbd_2016 electron transport complex, RnfABCDGE
type, B subunit"
/codon_start=1
/transl_table=11
/product="electron transport complex, RnfABCDGE type, B
subunit"
/protein_id="YP_903405.1"
/db_xref="GI:118602190"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR007202"
/db_xref="InterPro:IPR010207"
/db_xref="GeneID:4555388"
/translation="MDLSELFDSVLILSILTLILGSILGYAGIKFKLKTNPLVDQIDA
ILPQTQCGQCDYPGCRPYAQAISIGEAKINQCPPGGQEGADALAELLGVETLVLNAEH
GELKPNHVVFVDEAVCIGCTLCIQVCPVDAFLGASKMMTQVIIDECTGCDLCIPVCPV
DCIHVQEITVSNIFKVKHG"
misc_feature 165722..166102
/locus_tag="Rmag_0140"
/note="ferredoxin; Provisional; Region: PRK08764"
/db_xref="CDD:181550"
misc_feature 165746..165850
/locus_tag="Rmag_0140"
/note="Putative Fe-S cluster; Region: FeS; pfam04060"
/db_xref="CDD:112857"
misc_feature <165965..166108
/locus_tag="Rmag_0140"
/note="RPB11 and RPB3 subunits of RNA polymerase; Region:
RNAP_RPB11_RPB3; cl11409"
/db_xref="CDD:209307"
gene 166146..167639
/locus_tag="Rmag_0141"
/db_xref="GeneID:4555389"
CDS 166146..167639
/locus_tag="Rmag_0141"
/note="TIGRFAM: electron transport complex, RnfABCDGE
type, C subunit;
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein; Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit;
KEGG: noc:Noc_1173 electron transport complex protein
RnfC"
/codon_start=1
/transl_table=11
/product="electron transport complex, RnfABCDGE type, C
subunit"
/protein_id="YP_903406.1"
/db_xref="GI:118602191"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR010208"
/db_xref="InterPro:IPR011538"
/db_xref="GeneID:4555389"
/translation="MDDYSFNGGIVIRNPYPVDKMEIIQAPLPKKVIISLQQCIGEHA
KPCVSVGDYVLTGQVIASAEGSFGVFIHASISGVVLSIDKQVISHKSGVKFECITIES
DDKDKWIDNEGCGVDFLHSPVQTMIDCIQKSGIVGLGGAGFPTHVKLGKIKQCHTLII
NGTECEPGVMCDNALMQFYPREIIRGVEILLYICGAERAIIAIEDDKQVAYQALLMFN
HNDRISINQISTKYTSGAEKLLIKALLGVEISTGGFAVDKGIVCQNVATTKAVFDAVV
DHKPLVSRIVTVTGSGVKPNNFEVRLGASFESLISIASPSQKAHDYRMGGMMMGVDVT
DIQAPICKITNAIFVSNHIQKPAIQECIRCGKCSEVCPVKLLPQQLYWHTKSENIEKA
LNYNLADCIECACCDYVCPSHISLANYFSFAKTLNKQQTREQDRINIARERFEFREYR
LERNKLERAQMMVDKKKALKEKMVKDQSQKQKIAEAVQRVQQTKNKK"
misc_feature 166155..166460
/locus_tag="Rmag_0141"
/note="RnfC Barrel sandwich hybrid domain; Region: RnfC_N;
pfam13375"
/db_xref="CDD:205554"
misc_feature 166209..167420
/locus_tag="Rmag_0141"
/note="electron transport complex, RnfABCDGE type, C
subunit; Region: rnfC; TIGR01945"
/db_xref="CDD:162617"
misc_feature 166998..>167084
/locus_tag="Rmag_0141"
/note="SLBB domain; Region: SLBB; pfam10531"
/db_xref="CDD:204505"
misc_feature <167136..>167447
/locus_tag="Rmag_0141"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
gene 167669..168583
/locus_tag="Rmag_0142"
/db_xref="GeneID:4555390"
CDS 167669..168583
/locus_tag="Rmag_0142"
/note="TIGRFAM: electron transport complex, RnfABCDGE
type, D subunit;
PFAM: NQR2 and RnfD family protein;
KEGG: eca:ECA2279 electron transport complex protein"
/codon_start=1
/transl_table=11
/product="electron transport complex, RnfABCDGE type, D
subunit"
/protein_id="YP_903407.1"
/db_xref="GI:118602192"
/db_xref="InterPro:IPR004338"
/db_xref="InterPro:IPR011303"
/db_xref="GeneID:4555390"
/translation="MMRQVIYALVLGVMVAYYFFGWGILLQIALGAVTAIVVESVFIA
LRNRDIINSISDGSAVLTGILLAISIPSIAPWWVIVMGVSFAIIFGKQLYGGLGNNLF
NPAMLGYVFLLISYPLQMSTWQVDFLSFTQALKVIFDLSNIDVISGATKLDEVKNGLS
LVGSIQQLELHSPSQAWINVGFLFGGLYLFLKKVIFWQIPVAFLVGIVISSILLFVGN
TDLYLPTQNHLMLGGTMLGAFFIATDPVSASTTPKGRIIYGFLIGVLIVIIRTFGGYP
DGVAFAVLLINMTVPLIDSFTQPKVFGR"
misc_feature 167672..168577
/locus_tag="Rmag_0142"
/note="NQR2, RnfD, RnfE family; Region: NQR2_RnfD_RnfE;
cl00779"
/db_xref="CDD:207197"
gene 168583..169191
/locus_tag="Rmag_0143"
/db_xref="GeneID:4555391"
CDS 168583..169191
/locus_tag="Rmag_0143"
/note="TIGRFAM: electron transport complex, RnfABCDGE
type, G subunit;
PFAM: FMN-binding domain protein;
KEGG: tcx:Tcr_1032 electron transport complex, RnfABCDGE
type, G subunit"
/codon_start=1
/transl_table=11
/product="electron transport complex, RnfABCDGE type, G
subunit"
/protein_id="YP_903408.1"
/db_xref="GI:118602193"
/db_xref="InterPro:IPR007329"
/db_xref="InterPro:IPR010209"
/db_xref="GeneID:4555391"
/translation="MLHAILKSGALLFVFTVVSVFFVSLTQTNTKDVITYNEKQLLIQ
RLGELVSDYSNDILADQYTKTLKLHNVTQVVNIYPAKKNHKIFSYLIEHTYPNGYNGD
IRLLTGVGVDKKLLGVRVIIHKETPGLGDKIELKKSNWIEQFFGLSLSNPSMENWKVK
RDGGVFDAFTGATITPRAIVTATYQVLELLNEPCLLSKTPCN"
sig_peptide 168583..168663
/locus_tag="Rmag_0143"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.970) with cleavage site probability 0.786 at
residue 27"
misc_feature 168670..169188
/locus_tag="Rmag_0143"
/note="FMN-binding domain; Region: FMN_bind; cl01081"
/db_xref="CDD:212254"
gene complement(170121..170891)
/locus_tag="Rmag_0144"
/db_xref="GeneID:4555392"
CDS complement(170121..170891)
/locus_tag="Rmag_0144"
/note="KEGG: tcx:Tcr_0902 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903409.1"
/db_xref="GI:118602194"
/db_xref="GeneID:4555392"
/translation="MKNPIVVLGIGELGSVFSRAFLKNNYPVYPITRQTNIDKLVNTI
SPEFILVCTAEADLQNALQSIPKQWKDRVVMMQNELLPRDWQTHNFINSTVISVWFEK
KKGMDSKVLISSPTYGKKAQILIDSLALIDIPAHTLNSEKMLLFELVLKNLYILTTNI
AGIAIEKGATVNDLHNQYLNLMRDVSSDVLKLQSALTGKSFNERDLEQGMIKAFEGDL
THNCMGRSAPARLKRALELAKVFNLSVPTLEKIESKYF"
gene complement(170888..171757)
/locus_tag="Rmag_0145"
/db_xref="GeneID:4555393"
CDS complement(170888..171757)
/locus_tag="Rmag_0145"
/EC_number="6.2.1.5"
/note="TIGRFAM: succinyl-CoA synthetase, alpha subunit;
PFAM: CoA-binding domain protein; ATP-citrate
lyase/succinyl-CoA ligase;
KEGG: noc:Noc_0714 succinyl-CoA ligase, alpha subunit"
/codon_start=1
/transl_table=11
/product="succinyl-CoA synthetase (ADP-forming) alpha
subunit"
/protein_id="YP_903410.1"
/db_xref="GI:118602195"
/db_xref="InterPro:IPR003781"
/db_xref="InterPro:IPR005810"
/db_xref="InterPro:IPR005811"
/db_xref="GeneID:4555393"
/translation="MSVLIDKNTRVITQGFTGKQGTFHSEQSITYGTQFVGGVTPNKG
GQKHLNFPVFNTVAEAMNATNANASMIYVPPQFAYVSILEAIEAQMPVIVCITEGIPI
QDMLKIKAILKTSDSILIGPNCPGVITPDECKLGIMPGNIHQNGSVGVISRSGTLTYE
AVHQTTQSGLGQSTCIGIGGDPIQGMSFVDCLALFEMDPQTQSIIMVGEIGGSAEEEA
AEYIQSNVSKPVVSYIAGLSAPKGKRMGHAGAVINASTGKAIDKINALKKVGVAIAPT
PATMGKTLLEILA"
misc_feature complement(170891..171757)
/locus_tag="Rmag_0145"
/note="succinyl-CoA synthetase subunit alpha; Validated;
Region: PRK05678"
/db_xref="CDD:180194"
misc_feature complement(171458..171748)
/locus_tag="Rmag_0145"
/note="CoA binding domain; Region: CoA_binding;
smart00881"
/db_xref="CDD:197949"
misc_feature complement(170945..171307)
/locus_tag="Rmag_0145"
/note="CoA-ligase; Region: Ligase_CoA; cl02894"
/db_xref="CDD:207776"
gene complement(171754..172914)
/gene="sucC"
/locus_tag="Rmag_0146"
/db_xref="GeneID:4555394"
CDS complement(171754..172914)
/gene="sucC"
/locus_tag="Rmag_0146"
/EC_number="6.2.1.5"
/note="catalyzes the interconversion of succinyl-CoA and
succinate"
/codon_start=1
/transl_table=11
/product="succinyl-CoA synthetase subunit beta"
/protein_id="YP_903411.1"
/db_xref="GI:118602196"
/db_xref="InterPro:IPR005809"
/db_xref="InterPro:IPR005811"
/db_xref="InterPro:IPR013650"
/db_xref="GeneID:4555394"
/translation="MHIHEYQAKTLFRCRDIQIPKGILIDNTTKINDVCKALGGDVWV
VKAQIHAGGRGKGGGVIFCHSIEKVERVCNQLLGSKLITPQTDAKGLPVGQLLIEAKQ
NIERELYLSLLIDRQTHKITVLSSTKGGMDIEKVASKTPDKIIKFGIDPLGSLSVQDC
TFLAKKLGFNTELTKQFNNTLLSLYEIFTQKDVNLIEINPLIITQENKLLALDGKIDF
DDNALYRHKDIAKLRDISQEDEKERLASEYQLNYILFDGNIGCMVNGAGLAMATMDLI
EHFGGSPANFLDVGGGTTADRVAKAFELIQTETNVKSILVNIFGGIVHCDLIAQGILQ
AIKTVGLTLPIVVRLEGTNAPEGLNLLNKSKFNIHVESDLTKAAIKIVKLTK"
misc_feature complement(171757..172914)
/gene="sucC"
/locus_tag="Rmag_0146"
/note="succinyl-CoA synthetase subunit beta; Provisional;
Region: sucC; PRK00696"
/db_xref="CDD:179088"
misc_feature complement(172306..172911)
/gene="sucC"
/locus_tag="Rmag_0146"
/note="ATP-grasp domain; Region: ATP-grasp_2; pfam08442"
/db_xref="CDD:149489"
misc_feature complement(<172150..172428)
/gene="sucC"
/locus_tag="Rmag_0146"
/note="Protein of unknown function (DUF3826); Region:
DUF3826; pfam12875"
/db_xref="CDD:205122"
misc_feature complement(171769..172131)
/gene="sucC"
/locus_tag="Rmag_0146"
/note="CoA-ligase; Region: Ligase_CoA; pfam00549"
/db_xref="CDD:201299"
gene 172969..173532
/locus_tag="Rmag_0147"
/db_xref="GeneID:4555395"
CDS 172969..173532
/locus_tag="Rmag_0147"
/note="Involved in peptide bond synthesis; alters the
affinity of the ribosome for aminoacyl-tRNA"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_903412.1"
/db_xref="GI:118602197"
/db_xref="InterPro:IPR001059"
/db_xref="InterPro:IPR011768"
/db_xref="InterPro:IPR013185"
/db_xref="GeneID:4555395"
/translation="MVNYAINQFKNGLKLILDGNPCSIVNNEIVKPGKGQTFNRVKFK
DLITGKTLIKTFKSGETLEGADVMELDLQYLYNDGNTWNFMDLDSFEQYTIDNATMND
AKGYLVEQDMCTVTLWNDNPISVIPPNHVILEVLNTDPGLKGDTAGTGGKPATMNTGV
VVQVPLFVDIGDKVKVDTRTNEYVGRA"
misc_feature 172978..173529
/locus_tag="Rmag_0147"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:179058"
misc_feature 172987..173154
/locus_tag="Rmag_0147"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature 173170..173352
/locus_tag="Rmag_0147"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:88435"
misc_feature order(173239..173241,173314..173316,173329..173334)
/locus_tag="Rmag_0147"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88435"
misc_feature 173359..173526
/locus_tag="Rmag_0147"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:88469"
misc_feature order(173446..173448,173497..173499,173512..173517)
/locus_tag="Rmag_0147"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88469"
gene 173595..174476
/locus_tag="Rmag_0148"
/db_xref="GeneID:4555396"
CDS 173595..174476
/locus_tag="Rmag_0148"
/note="PFAM: tRNA synthetase, class II (D, K and N);
KEGG: cps:CPS_4763 conserved hypothetical protein
TIGR00462"
/codon_start=1
/transl_table=11
/product="tRNA synthetase, class II (D, K and N)"
/protein_id="YP_903413.1"
/db_xref="GI:118602198"
/db_xref="InterPro:IPR002313"
/db_xref="InterPro:IPR004364"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:4555396"
/translation="MQGNIALIKRQRVIQKIRQFFEQQAVLEVQTPTLINTPTSDAYI
DSISLSVNANIGMQNTQYLHTSPELEMKKLLVQGSGDIYQICQVFRDNEYGEHNSNEF
TLLEYYRLGFDINQLMADMVNLLQTLGIQDKVHQLSYAQVFSQYADIDVLNTDFDVLK
VIASKLGLSTDFAWIEELQMLLFVHLVEPKLKNIPLCFIYDYPKSQSAFAKVKNQVAH
RFELYLNGIEVANGYDELQTKDEYQQVFTCETIKRKQLGKPISQIGVSFLSKLNKSLP
QCSGVAIGINRLLTQIS"
misc_feature 173613..174458
/locus_tag="Rmag_0148"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature 173652..174461
/locus_tag="Rmag_0148"
/note="EF-P lysine aminoacylase GenX; Region: genX;
TIGR00462"
/db_xref="CDD:200019"
misc_feature 173670..173684
/locus_tag="Rmag_0148"
/note="motif 1; other site"
/db_xref="CDD:29813"
misc_feature order(173673..173678,173682..173684,173811..173816,
173859..173861,173868..173870)
/locus_tag="Rmag_0148"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29813"
misc_feature order(173790..173792,173796..173798,173862..173864,
173898..173900,173904..173906,173910..173918,
174276..174281,174291..174293,174432..174437,
174441..174446,174453..174455)
/locus_tag="Rmag_0148"
/note="active site"
/db_xref="CDD:29813"
misc_feature order(173859..173864,173868..173870)
/locus_tag="Rmag_0148"
/note="motif 2; other site"
/db_xref="CDD:29813"
misc_feature order(174444..174446,174453..174455)
/locus_tag="Rmag_0148"
/note="motif 3; other site"
/db_xref="CDD:29813"
gene 174527..175771
/locus_tag="Rmag_0149"
/db_xref="GeneID:4555397"
CDS 174527..175771
/locus_tag="Rmag_0149"
/note="PFAM: Sel1 domain protein repeat-containing
protein;
KEGG: lpf:lpl1180 hypothetical protein"
/codon_start=1
/transl_table=11
/product="Sel1 domain-containing protein"
/protein_id="YP_903414.1"
/db_xref="GI:118602199"
/db_xref="InterPro:IPR006597"
/db_xref="GeneID:4555397"
/translation="MIKLIYLVLLFSFPIQALQILQPINDNQAVQQQLEAPQLNAPLS
VKQLLTQLKKSAKLGDARSQFSLANMYHNGINVIVDDKLAFYWYLQVAEQGYVSAQFN
VANSYYYALGTDKDLEQALHWYKKSALLGYRAAQLNLAKLYDVGIGVDRDLTLAQRWY
EAAANQFDPEAQFYLADFYEREGDSSKALDYYKKSANQGFVNAQVRLSALYRIGYLVK
QSDIKALYWTLIASNQTVKLLKKLSSKSQKVVQNKQEKSVIHQSIIKPIVIIEPIMVK
TPQQSTINLNEQLFSNIDRLIPSQDEISKSLNYNTKLNTNLEILLTSVGQNNPIVQYN
LSALYSKDGIVRKDNRAAFILMRQSANQGIIQSQNILAIMYMNGIGVQIDHNKAYYWA
NVTAQKGSQQGKRILLYLIANL"
sig_peptide 174527..174580
/locus_tag="Rmag_0149"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.702) with cleavage site probability 0.598 at
residue 18"
misc_feature 174626..175189
/locus_tag="Rmag_0149"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 174707..174814
/locus_tag="Rmag_0149"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 174815..174922
/locus_tag="Rmag_0149"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 174929..175024
/locus_tag="Rmag_0149"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 175031..175123
/locus_tag="Rmag_0149"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 175421..>175756
/locus_tag="Rmag_0149"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 175619..175726
/locus_tag="Rmag_0149"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene 175836..176161
/locus_tag="Rmag_0150"
/pseudo
/db_xref="GeneID:4555471"
gene 176434..177645
/locus_tag="Rmag_0151"
/db_xref="GeneID:4555398"
CDS 176434..177645
/locus_tag="Rmag_0151"
/EC_number="6.3.4.5"
/note="catalyzes the formation of
2-N(omega)-(L-arginino)succinate from L-citrulline and
L-aspartate in arginine biosynthesis, AMP-forming"
/codon_start=1
/transl_table=11
/product="argininosuccinate synthase"
/protein_id="YP_903415.1"
/db_xref="GI:118602200"
/db_xref="InterPro:IPR001518"
/db_xref="GeneID:4555398"
/translation="MNKINIKKVVLAYSGGLDTSIIVKWLQDTYRCEVVTFTADIGQG
EEVELARTKAKAAGVKEVYIENLREEFVRDFVFPMFRANAIYEGEYLLGTSIARPLIS
KRLVEIAHQEDADAISHGATGKGNDQVRFELNAYALDADIQVIAPWREWDLSSRESLM
DYAQKHGIEIDYKKQLKKSPYSMDANLLHISYEGGILEDPWAEPEEDMWRWTVSPENA
PNKAEYVEITFKKGGIIAINGKTMSPASVMEDLNKRAGAHGIGRNDIVENRFVGMKSR
GCYETPAGTVMLKAHRAMESLTLDQAAAHLKDELMPKYAEMVYNGFWFAPERKMLQAA
IDNTQEIVNGIVRLKFYKGNVTVVGRQSKDSLFSEKIATFEDDEGAYNQKDAAGFIKL
NALRLRLKALK"
misc_feature 176452..177603
/locus_tag="Rmag_0151"
/note="Argininosuccinate synthase [Amino acid transport
and metabolism]; Region: ArgG; COG0137"
/db_xref="CDD:30486"
misc_feature 176458..177603
/locus_tag="Rmag_0151"
/note="Argininosuccinate synthase. The Argininosuccinate
synthase is a urea cycle enzyme that catalyzes the
penultimate step in arginine biosynthesis: the
ATP-dependent ligation of citrulline to aspartate to form
argininosuccinate, AMP and pyrophosphate . In...; Region:
Argininosuccinate_Synthase; cd01999"
/db_xref="CDD:30186"
misc_feature order(176467..176469,176488..176490,176542..176544,
176548..176550,176560..176562,176725..176727,
176791..176793,176824..176826,176977..176982)
/locus_tag="Rmag_0151"
/note="ANP binding site [chemical binding]; other site"
/db_xref="CDD:30186"
misc_feature order(176701..176703,176713..176718,176809..176811,
176821..176823,176977..176985,177004..177006,
177010..177012,177232..177234,177268..177270,
177388..177390)
/locus_tag="Rmag_0151"
/note="Substrate Binding Site II [chemical binding]; other
site"
/db_xref="CDD:30186"
misc_feature order(176794..176799,176806..176814)
/locus_tag="Rmag_0151"
/note="Substrate Binding Site I [chemical binding]; other
site"
/db_xref="CDD:30186"
gene complement(177719..177792)
/locus_tag="Rmag_R0007"
/note="tRNA-Cys1"
/db_xref="GeneID:4555580"
tRNA complement(177719..177792)
/locus_tag="Rmag_R0007"
/product="tRNA-Cys"
/db_xref="GeneID:4555580"
gene complement(177865..177940)
/locus_tag="Rmag_R0008"
/note="tRNA-Gly2"
/db_xref="GeneID:4555581"
tRNA complement(177865..177940)
/locus_tag="Rmag_R0008"
/product="tRNA-Gly"
/db_xref="GeneID:4555581"
gene complement(177993..178577)
/locus_tag="Rmag_0152"
/db_xref="GeneID:4555399"
CDS complement(177993..178577)
/locus_tag="Rmag_0152"
/EC_number="2.7.8.5"
/note="TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase;
PFAM: CDP-alcohol phosphatidyltransferase;
KEGG: aci:ACIAD0342
CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase (phosphatidylglycerophosphate
synthase) (PGP synthase)"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase"
/protein_id="YP_903416.1"
/db_xref="GI:118602201"
/db_xref="InterPro:IPR000462"
/db_xref="InterPro:IPR004570"
/db_xref="GeneID:4555399"
/translation="MTTIPNILTLSRIFLIPVFVSLYYFQPAYSIMPVFTWINFLLTG
TYVLISATDYFDGYLARRLNMTSQLGAFLDPVADKLMVSTALILLVDFYPTDTHWYIS
VCALIIISREILVSALREWMGAIGQRSNVSVSWMGKVKTFVQIFAILFLLYQQPFFGL
PSFKIGVVLLLIATSLTLWSGFIYLKEGRKTFNN"
misc_feature complement(178008..178568)
/locus_tag="Rmag_0152"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene complement(178612..178688)
/locus_tag="Rmag_R0009"
/note="tRNA-Arg4"
/db_xref="GeneID:4555582"
tRNA complement(178612..178688)
/locus_tag="Rmag_R0009"
/product="tRNA-Arg"
/db_xref="GeneID:4555582"
gene complement(178742..179995)
/locus_tag="Rmag_0153"
/db_xref="GeneID:4555400"
CDS complement(178742..179995)
/locus_tag="Rmag_0153"
/EC_number="6.3.2.10"
/note="TIGRFAM:
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase;
PFAM: cytoplasmic peptidoglycan synthetase domain protein;
cytoplasmic peptidoglycan synthetases domain protein; Mur
ligase, middle domain protein;
KEGG: par:Psyc_2052 probable
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase"
/protein_id="YP_903417.1"
/db_xref="GI:118602202"
/db_xref="InterPro:IPR000713"
/db_xref="InterPro:IPR004101"
/db_xref="InterPro:IPR005863"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:4555400"
/translation="MLQTTTSTIAKILKTDCTTNVEFKDVCTDTRKHMNGALFLALTG
DNFDAHDYIDQAQQMGAVAIVANKPVNNQLPTLVVDDTQIALNTIASWHLKNIKPIVI
AITGSNGKTTTKNMLANILNLQAPTLKTQGNLNNHLGVPMTLLTLEEQHQYAVIEMGA
NHLGEIAHLCSLVNPNIAIVTNTLDAHIGEFGGFDNLVKAKGEIYSNNSHNIVNTQDT
FTGDVSFGKGGDIFASKLVNNKFDLNIYKQKISVTLNLIGTHNIENALAASTCAYALG
IDINLIKQGLEVTKAEHGRLEVINTKKFRIIDDTYNANPHSTTTALKALQDFSGEKIV
VLGAMRELGNDSEELHLKIGQLAKKSADTFYSYGKLTQHYYGIHFDSKQQLANHLLAN
HVHATVLIKGSRTVKMNELVDLLKK"
misc_feature complement(179717..179932)
/locus_tag="Rmag_0153"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature complement(178751..179914)
/locus_tag="Rmag_0153"
/note="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Region: murF; TIGR01143"
/db_xref="CDD:200077"
misc_feature complement(179210..179683)
/locus_tag="Rmag_0153"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature complement(<178910..179116)
/locus_tag="Rmag_0153"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene complement(180021..180191)
/locus_tag="Rmag_0154"
/pseudo
/db_xref="GeneID:4555472"
gene complement(180638..182032)
/locus_tag="Rmag_0155"
/db_xref="GeneID:4554653"
CDS complement(180638..182032)
/locus_tag="Rmag_0155"
/EC_number="6.3.2.13"
/note="TIGRFAM: UDP-N-acetylmuramyl-tripeptide
synthetases;
PFAM: cytoplasmic peptidoglycan synthetase domain protein;
cytoplasmic peptidoglycan synthetases domain protein; Mur
ligase, middle domain protein;
KEGG: lpp:lpp0978
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase"
/protein_id="YP_903418.1"
/db_xref="GI:118602203"
/db_xref="InterPro:IPR000713"
/db_xref="InterPro:IPR001645"
/db_xref="InterPro:IPR004101"
/db_xref="InterPro:IPR005761"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:4554653"
/translation="MNISQLLANIVQTKIDIEIKGLCLNAQSTQPGDLFIALQGKLTH
GADYINQAIDKGCVAILVDSKEIECVIPSIRIDNLSQYLQTLANTFYKNAIKVNIISI
TGTNGKTSVAYFISQLLTKLGIKNGLIGTLGITHSQQLSLNTTPDILTLYQVLDNYYQ
NNIHHAILEVSSHALTQDRIAGLNIKQAIFTNLTQDHLDYHHTLDKYQATKEKLFVLD
TVESVILNQDDSHYKHFLNITKDKKRISYSLGDFDSIKTIEQGFLVQLDHYVFEIPFL
GEFNLLNILAALNSVEALGFKRDDIIPLFYQLLPPPGRMQRIEPHLAWIDYAHTPDAI
GNAITTLKKHYPNFKIRIVFGCGGNRDKDKRAEMGKIASNLADTIILTNDNPRSENPK
TIIENILSGIDDSYKLDIIENRQLAIETAITTLKENECLLIAGKGHETIQQFSDKTIY
LNDLEIAQNSTKAI"
misc_feature complement(180659..182032)
/locus_tag="Rmag_0155"
/note="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional; Region: murE;
PRK00139"
/db_xref="CDD:178894"
misc_feature complement(181760..181981)
/locus_tag="Rmag_0155"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature complement(181190..181726)
/locus_tag="Rmag_0155"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature complement(180848..181102)
/locus_tag="Rmag_0155"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 182253..184142
/locus_tag="Rmag_0156"
/db_xref="GeneID:4554654"
CDS 182253..184142
/locus_tag="Rmag_0156"
/note="TIGRFAM: Twin-arginine translocation pathway
signal;
PFAM: metallophosphoesterase; 5'-Nucleotidase domain
protein;
KEGG: tcx:Tcr_1549 sulfate thiol esterase"
/codon_start=1
/transl_table=11
/product="sulfate thiol esterase SoxB"
/protein_id="YP_903419.1"
/db_xref="GI:118602204"
/db_xref="InterPro:IPR004843"
/db_xref="InterPro:IPR006179"
/db_xref="InterPro:IPR006311"
/db_xref="InterPro:IPR008334"
/db_xref="GeneID:4554654"
/translation="MVLTRRDFIKVLGAGSAAGLISGCGNDADKLSSQDNRYEVAKTG
NARILHITDTHGNLLPNYFREPNVNLGFGATFGQLPHVVGNKLLKQIGVKAGSADAYA
FTYNNFEDLVAKYGKTGGFSQIKTVLDSLRESADGVQNTLTLDGGDTWQGSGTSLWTR
GADMVEACNILGVDVMVGHWEFTYKEEETLKNISFFKGDFLGQNVRIIEDTLMGDEYI
TMTEKYGGNGLFDENEGLPFKPYVIKNVGGHRIAVIGQAFPRTSNANPQKYFFPDWSF
GLREDEMSELVSDIRKNEKPDAVIIISHNGMDVDIKMASRISGIDAIFGGHTHDGMPK
PVEVKNAGGVTVVTNAGCSGKYIGVMDLNIKDHKVMGYEYKMLPILTDFIKPDTAMVS
FIDKIRTTRYDKDVVEARSAKMLNNPDRIGKTYDEILTEKLCTTEQTLYRRGNFMGTW
DQVLVNSLREEHDANFAMSAGVRWGTSVPAGYNVTMEDLMTNTSMTYGETYVSELKGA
QLKEILEGIAENLFVQDPYLQSGGDMVRMGGMDYTIDPALGLGQRISNMKDDEGTPID
LNKFYKVSGWAQVSNVGNGRLMWDVAADYLRKQKHLNLTKVNHPTIKGVNNNPGIENY
DGKLI"
misc_feature 182343..184007
/locus_tag="Rmag_0156"
/note="5'-nucleotidase/2',3'-cyclic phosphodiesterase and
related esterases [Nucleotide transport and metabolism];
Region: UshA; COG0737"
/db_xref="CDD:31080"
misc_feature 182388..183389
/locus_tag="Rmag_0156"
/note="Thermus thermophilus SoxB and related proteins,
N-terminal metallophosphatase domain; Region: MPP_SoxB_N;
cd07411"
/db_xref="CDD:163654"
misc_feature order(182409..182411,182415..182417,182694..182696,
182787..182792,183162..183164,183231..183233,
183237..183239)
/locus_tag="Rmag_0156"
/note="active site"
/db_xref="CDD:163654"
misc_feature order(182409..182411,182415..182417,182694..182696,
182787..182789,183162..183164,183231..183233,
183237..183239)
/locus_tag="Rmag_0156"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163654"
misc_feature 183606..183971
/locus_tag="Rmag_0156"
/note="5'-nucleotidase, C-terminal domain; Region:
5_nucleotid_C; pfam02872"
/db_xref="CDD:202440"
gene 184536..185663
/locus_tag="Rmag_0157"
/db_xref="GeneID:4554655"
CDS 184536..185663
/locus_tag="Rmag_0157"
/note="KEGG: jan:Jann_0120 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903420.1"
/db_xref="GI:118602205"
/db_xref="GeneID:4554655"
/translation="MLYLIKAITLFWLLIDVSIADMVRPALVEISIYPDKKVDVVIDL
SLEALMTGISTQYKNTTDAPNSAQYDTLRSLIADDLREQFKAFETEFLNYIFLTINEK
PQQLTLTSVKIDIVGYKKRSRKTLLTYSTQLRKWPKTLSWQYNKAYGDSALRYQVYKE
GEYNWSQWRWLRNGVTSGVIDINDLEPITTMQRMLQFISIGFDHVIPLGWDHMLFIIG
MALSSLMWRRLLLLVSVFTLAHTLTLGLAMLGIVEISERIIEPLIAFSIAYVVIENLL
PNQSIKRKSIIVFLFGLVHGLGFANMLKSFEMSSDNFLITLISFNIGVELAQILIVLS
VVSLLFFVKSLNLDYKKIAIVPTSIVISLIGIWWGIDRLIN"
misc_feature 185124..185519
/locus_tag="Rmag_0157"
/note="HupE / UreJ protein; Region: HupE_UreJ_2;
pfam13795"
/db_xref="CDD:205968"
gene complement(185671..186654)
/locus_tag="Rmag_0158"
/db_xref="GeneID:4554656"
CDS complement(185671..186654)
/locus_tag="Rmag_0158"
/EC_number="5.3.1.13"
/note="KEGG: noc:Noc_2788 sugar phosphate isomerase
involved in capsule formation, KpsF/GutQ;
TIGRFAM: KpsF/GutQ family protein;
PFAM: CBS domain containing protein; sugar isomerase
(SIS)"
/codon_start=1
/transl_table=11
/product="KpsF/GutQ family protein"
/protein_id="YP_903421.1"
/db_xref="GI:118602206"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR001347"
/db_xref="InterPro:IPR004800"
/db_xref="GeneID:4554656"
/translation="MCLLAMSNSLLQSAKKVILTEAQAVMMLADGLDQSFIDACQLIQ
NCTGKVVLIGMGKSGHIAGKIAATFASTGTPAFAVHPGEAGHGDLGMITQEDVVIAIS
YSGESDEIMTLIPIIKRLGILIIGMTKNVNSSIGRISNVHLDVSVEKEACPHNLAPTS
STTVALVMGDTLAISLLINKGFSVDDFARSHPSGTLGRRLLTLVSTIMKIGDDIPIVS
ADTKLLDALLIMSQKTLGMVLITNNNNILKGIFTDGDLRRVLETYPNIQSLTISKVMT
PNCQSISKDRPAMAAVQMMDEFNLNSLPVVDDNNQVVGAINTHTLMQAKII"
misc_feature complement(185674..186621)
/locus_tag="Rmag_0158"
/note="D-arabinose 5-phosphate isomerase; Provisional;
Region: PRK10892"
/db_xref="CDD:182814"
misc_feature complement(186130..186513)
/locus_tag="Rmag_0158"
/note="KpsF-like protein. KpsF is an arabinose-5-phosphate
isomerase which contains SIS (Sugar ISomerase) domains.
SIS domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. KpsF catalyzes the
reversible reaction of ribulose...; Region: SIS_Kpsf;
cd05014"
/db_xref="CDD:88409"
misc_feature complement(order(186349..186351,186481..186483))
/locus_tag="Rmag_0158"
/note="putative active site [active]"
/db_xref="CDD:88409"
misc_feature complement(185683..186024)
/locus_tag="Rmag_0158"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with KpsF/GutQ domains in the API [A5P (D-arabinose
5-phosphate) isomerase] protein. These APIs catalyze the
conversion of the pentose pathway...; Region:
CBS_pair_KpsF_GutQ_assoc; cd04604"
/db_xref="CDD:73104"
gene 186730..187173
/locus_tag="Rmag_0159"
/db_xref="GeneID:4554657"
CDS 186730..187173
/locus_tag="Rmag_0159"
/note="PFAM: low molecular weight phosphotyrosine protein
phosphatase;
KEGG: bbr:BB2274 low molecular weight
protein-tyrosine-phosphatase"
/codon_start=1
/transl_table=11
/product="protein tyrosine phosphatase"
/protein_id="YP_903422.1"
/db_xref="GI:118602207"
/db_xref="InterPro:IPR000106"
/db_xref="GeneID:4554657"
/translation="MGNICRSPTAEGAFKSQMEKRGVGCLFEIDSAGTHAYHIGEQPD
SRSQLAANKCHVDLSYQLARQVHKSDFYHYDYIFSMDTSNLSVLQSICPREYQTKLSL
MLDNIPNNQVKSVPDPYFEGCFDEVFEMLNCASGFLLQSLLKRSL"
misc_feature 186730..187149
/locus_tag="Rmag_0159"
/note="Low molecular weight phosphatase family; Region:
LMWPc; cd00115"
/db_xref="CDD:29014"
misc_feature 186733..187110
/locus_tag="Rmag_0159"
/note="Low molecular weight phosphotyrosine protein
phosphatase; Region: LMWPc; pfam01451"
/db_xref="CDD:201802"
misc_feature order(186733..186738,186742..186750)
/locus_tag="Rmag_0159"
/note="active site"
/db_xref="CDD:29014"
gene 187302..187676
/gene="rpsL"
/locus_tag="Rmag_0160"
/db_xref="GeneID:4554658"
CDS 187302..187676
/gene="rpsL"
/locus_tag="Rmag_0160"
/note="interacts with and stabilizes bases of the 16S rRNA
that are involved in tRNA selection in the A site and with
the mRNA backbone; located at the interface of the 30S and
50S subunits, it traverses the body of the 30S subunit
contacting proteins on the other side; mutations in the
S12 gene confer streptomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_903423.1"
/db_xref="GI:118602208"
/db_xref="InterPro:IPR005679"
/db_xref="InterPro:IPR006032"
/db_xref="GeneID:4554658"
/translation="MSTINQLVRNPRKKKVIKSGVPALDSCPQKRGVCTRVYTTTPKK
PNSALRKIARVRLTNANEVTTYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL
DTTGVDGRMQGRSKYGTKKSKK"
misc_feature 187308..187631
/gene="rpsL"
/locus_tag="Rmag_0160"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:48341"
misc_feature order(187311..187316,187320..187325,187332..187337)
/gene="rpsL"
/locus_tag="Rmag_0160"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:48341"
misc_feature 187311..187313
/gene="rpsL"
/locus_tag="Rmag_0160"
/note="S8 interaction site; other site"
/db_xref="CDD:48341"
misc_feature order(187335..187343,187377..187379,187383..187388,
187392..187394,187437..187442,187446..187454,
187473..187475,187497..187499,187506..187511,
187548..187553,187563..187568,187629..187631)
/gene="rpsL"
/locus_tag="Rmag_0160"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(187428..187433,187563..187565)
/gene="rpsL"
/locus_tag="Rmag_0160"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:48341"
misc_feature 187431..187436
/gene="rpsL"
/locus_tag="Rmag_0160"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(187434..187451,187509..187535)
/gene="rpsL"
/locus_tag="Rmag_0160"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:48341"
gene 187709..188182
/locus_tag="Rmag_0161"
/db_xref="GeneID:4554659"
CDS 187709..188182
/locus_tag="Rmag_0161"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_903424.1"
/db_xref="GI:118602209"
/db_xref="InterPro:IPR000235"
/db_xref="InterPro:IPR005717"
/db_xref="GeneID:4554659"
/translation="MRRRSAPKRKILPDPKFGDLVLAKFVNILMLDGKKSVAEKIVYE
ALDIIEIRGGGNEQPIEVFKQALDNIGPQVEIKSRRVGGSTYQVPIEVRAERKIALAM
RWIIEASRKRGEKGMKLRLAGEVLDAVQNRGSAFKKKKDTHRMAEANKAFAHFRW"
misc_feature 187709..188179
/locus_tag="Rmag_0161"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:180003"
gene 188207..190309
/locus_tag="Rmag_0162"
/db_xref="GeneID:4554660"
CDS 188207..190309
/locus_tag="Rmag_0162"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_903425.1"
/db_xref="GI:118602210"
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004540"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005517"
/db_xref="GeneID:4554660"
/translation="MARITPLDRYRNVGIMAHIDAGKTTTTERILLYTGRTHKIGEVH
DGGATMDWMEQEQKRGITITSAATTCFWKGMDKQFEDHRINIIDTPGHVDFTIEVERS
LKVLDGACAVFCAVGGVEPQSETVWRQANKYNVPRIGFVNKMDRAGADFLRICEQIKT
RLGGNPVPMQIAIGAEENFEGVIDLISMRAIFWNEADQGATYETRDIPAELQELAEKK
REFMIESAAEANDELMEKYLEEGELSHDEIKEGIRSQTIKSEIIPMFCGSAFKNKGVQ
VVLDAMIMYMPSPLDVDAIAGILNDKDEAVASRNVGDDEPFAALAFKIATDPFVGNLT
FFRVYSGVLKAGDFVYNSSQGKKERIGRMVQMHANEREEIKEVRAGDIAAAIGLKDVT
TGDTLCDLKQKIVLEKMEFPEPVIALAVEPKTKEDQEKMGIALGKLAAEDPSFRVSTD
EESGQTIIAGMGELHLDIIVDRMVREFDVECNVGAPQVSYREAITTMVEHQYKFAKQS
GGRGQYGHVYLRIEPQEPGAGYEFVDEIKGGVIPKEYVPAVNKGIQEQIKNGVLAGFP
IVDIKVTVYDGSYHDVDSNEIAFKIAASKCLSEGVRMANPQLLEPMMAVEVSTPENYM
GDVIGDINRRRGIVSAMEDTPTGKQIKAEVPLIEMFGYANDLRSMTQGRASYSMEFKK
YTAAPKNVADEVIEKLNK"
misc_feature 188207..190306
/locus_tag="Rmag_0162"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:178789"
misc_feature 188240..189073
/locus_tag="Rmag_0162"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 188255..188278
/locus_tag="Rmag_0162"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(188258..188260,188264..188266,188276..188281,
188288..188290,188297..188302,188402..188407,
188480..188485,188552..188557,188663..188665,
188675..188677)
/locus_tag="Rmag_0162"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(188264..188266,188270..188281,188630..188635,
188639..188641,189008..189016)
/locus_tag="Rmag_0162"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 188345..188404
/locus_tag="Rmag_0162"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 188390..188392
/locus_tag="Rmag_0162"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 188468..188479
/locus_tag="Rmag_0162"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 188474..188530
/locus_tag="Rmag_0162"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 188630..188641
/locus_tag="Rmag_0162"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 189008..189016
/locus_tag="Rmag_0162"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 189155..189403
/locus_tag="Rmag_0162"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature 189674..190021
/locus_tag="Rmag_0162"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:58274"
misc_feature 190034..190267
/locus_tag="Rmag_0162"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 190320..191510
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/db_xref="GeneID:4554661"
CDS 190320..191510
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/EC_number="3.6.5.3"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_903426.1"
/db_xref="GI:118602211"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004160"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004541"
/db_xref="InterPro:IPR005225"
/db_xref="GeneID:4554661"
/translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKIMSEARGGEF
KDYADIDNAPEERERGITISTAHVEYESEARHYAHVDCPGHADYIKNMITGAAQMDGA
IIVIAATDGPMAQTREHILLSKQVGVPYIVVYMNKADMVDDEELVELVELEIRELLDE
YDFPGDDTPIIFGSALKALEGDMSDIGMSSIIKLVKALDTYIPTPKRDTDKSFLMPIE
DVFSISGRGTVVTGRIEAGIVYVGDELEIVGIKDTQTTTCTGVEMFRKLLDSGEAGDN
VGVLLRGTKREEVERGQVLAKPGSIKPHSKFEAEVYILSKDEGGRHTPFFNNYRPQFY
FRTTDVTGACQLPDGVEMVMPGDNVKMQVELLSPIAMEDGLRFAIREGGRTVGAGVVS
KVTD"
misc_feature 190320..191507
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 190350..190934
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 190374..190397
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(190377..190379,190383..190385,190395..190400,
190407..190409,190416..190421,190431..190433,
190515..190520,190572..190577,190644..190649,
190653..190664,190671..190673,190764..190766,
190776..190778,190854..190859)
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(190383..190400,190458..190460,190725..190730,
190734..190736,190839..190847)
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 190485..190517
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 190503..190505
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 190560..190571
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 190566..190622
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 190725..190736
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 190839..190847
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 190956..191216
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 191223..191492
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(191259..191261,191265..191273,191325..191327,
191445..191453,191481..191483)
/locus_tag="Rmag_0163"
/gene_synonym="tuf"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 191601..191912
/gene="rpsJ"
/locus_tag="Rmag_0164"
/db_xref="GeneID:4554662"
CDS 191601..191912
/gene="rpsJ"
/locus_tag="Rmag_0164"
/note="NusE; involved in assembly of the 30S subunit; in
the ribosome, this protein is involved in the binding of
tRNA; in Escherichia coli this protein was also found to
be involved in transcription antitermination; NusB/S10
heterodimers bind boxA sequences in the leader RNA of rrn
operons which is required for antitermination; binding of
NusB/S10 to boxA nucleates assembly of the antitermination
complex"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S10"
/protein_id="YP_903427.1"
/db_xref="GI:118602212"
/db_xref="InterPro:IPR001848"
/db_xref="InterPro:IPR005731"
/db_xref="GeneID:4554662"
/translation="MSNQNIRIKLKAFDHRLIDKSALEIVETAKRTGASVRGPIPLPT
KKERFTVLTSPHVNKKARDQYELRTYVRLMDVISPTDKTVDALMKLDLAAGVDVAIKL
N"
misc_feature 191601..191906
/gene="rpsJ"
/locus_tag="Rmag_0164"
/note="30S ribosomal protein S10; Reviewed; Region: rpsJ;
PRK00596"
/db_xref="CDD:179076"
gene 191948..192664
/gene="rplC"
/locus_tag="Rmag_0165"
/db_xref="GeneID:4554663"
CDS 191948..192664
/gene="rplC"
/locus_tag="Rmag_0165"
/note="binds directly near the 3' end of the 23S rRNA,
where it nucleates assembly of the 50S subunit; essential
for peptidyltransferase activity; mutations in this gene
confer resistance to tiamulin"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L3"
/protein_id="YP_903428.1"
/db_xref="GI:118602213"
/db_xref="InterPro:IPR000597"
/db_xref="GeneID:4554663"
/translation="MAMGLVGQKIGMTRLISDDGSITPVSVIKIELNRIVQTKTVDTN
GYSAIQVTTGVKVNKKGEAKVHRVPAAIKGHYAKTSQEIGLGLWEFRVEADEITDATS
VDISLFSAGHYVNVVGRSKGKGFQGGVKRHNFQMQDATHGNSISHRAIGSTGQCQEPG
RVFKGKKMAGHMGNEQVTQECLKIVKVDSERNIIFVKGSIPGATKGFVKISLSSKKNK
INQEVSKNIQNQATNEVVLN"
misc_feature 191948..192571
/gene="rplC"
/locus_tag="Rmag_0165"
/note="50S ribosomal protein L3; Validated; Region: rplC;
PRK00001"
/db_xref="CDD:178784"
gene 192684..193298
/gene="rplD"
/locus_tag="Rmag_0166"
/db_xref="GeneID:4554664"
CDS 192684..193298
/gene="rplD"
/locus_tag="Rmag_0166"
/note="L4 is important during the early stages of 50S
assembly; it initially binds near the 5' end of the 23S
rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L4"
/protein_id="YP_903429.1"
/db_xref="GI:118602214"
/db_xref="InterPro:IPR002136"
/db_xref="GeneID:4554664"
/translation="MKFKVLNISTNKSSTIEVADTVFARGFNQALVHQVTTAYMSGGR
QGSKAQKNRSTVSGGSKRPWAQKGTGRARAGTTRGPIWRSGGVTFSAAPRGYAQKVNK
KMYKGAISVIFSELARSERLKVVSEFNIKEIKTKNITALLKALNVKDVLLMTDELDEN
LYLSSRNLYHVGVCDIQSIDPVSLIGYDNVVVTEIALKKIEAML"
misc_feature 192684..193295
/gene="rplD"
/locus_tag="Rmag_0166"
/note="50S ribosomal protein L4; Provisional; Region:
rplD; PRK05319"
/db_xref="CDD:180011"
gene 193295..193585
/gene="rplW"
/locus_tag="Rmag_0167"
/db_xref="GeneID:4554665"
CDS 193295..193585
/gene="rplW"
/locus_tag="Rmag_0167"
/note="binds third domain of 23S rRNA and protein L29;
part of exit tunnel"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L23"
/protein_id="YP_903430.1"
/db_xref="GI:118602215"
/db_xref="InterPro:IPR013025"
/db_xref="GeneID:4554665"
/translation="MNQEKILKILLAPIVSEKTTMLSAHNQYAFKVRVDCSKREIKAA
VEMLFSVNVENVTTSIVKGKKKIFKGRIGSRPNWKKAMVKVSEGQMIDVSRT"
misc_feature 193313..193576
/gene="rplW"
/locus_tag="Rmag_0167"
/note="50S ribosomal protein L23; Reviewed; Region: rplW;
PRK05738"
/db_xref="CDD:180228"
gene 193596..194426
/gene="rplB"
/locus_tag="Rmag_0168"
/db_xref="GeneID:4554666"
CDS 193596..194426
/gene="rplB"
/locus_tag="Rmag_0168"
/note="one of the primary rRNA-binding proteins; required
for association of the 30S and 50S subunits to form the
70S ribosome, for tRNA binding and peptide bond formation"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L2"
/protein_id="YP_903431.1"
/db_xref="GI:118602216"
/db_xref="InterPro:IPR002171"
/db_xref="InterPro:IPR005880"
/db_xref="GeneID:4554666"
/translation="MAQVIKRKPTSPGRRFVVSIVDKELHKGASYAPLTQSKNRISGR
NNVGRITTRHKGGGHKRRYRIIDFKRNKDDITARVERLEYDPNRSANIALVLYTDGER
RYIIAPHGLSVGYTIVSGNSVAIQAGNVMPLSNIPLGGVVHCIELKPMKGAQIARSAG
AFAQLIAKEGNYVTLRLRSGEVRKVLADCRATIGEVSRSEHSLKKLGKAGATRWRGVR
PTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGTPTKGYKTRSNKRTDKLILRHRNKG
"
misc_feature 193596..194423
/gene="rplB"
/locus_tag="Rmag_0168"
/note="50S ribosomal protein L2; Validated; Region: rplB;
PRK09374"
/db_xref="CDD:181807"
misc_feature 193722..193952
/gene="rplB"
/locus_tag="Rmag_0168"
/note="Ribosomal Proteins L2, RNA binding domain; Region:
Ribosomal_L2; pfam00181"
/db_xref="CDD:109247"
misc_feature 193968..194354
/gene="rplB"
/locus_tag="Rmag_0168"
/note="Ribosomal Proteins L2, C-terminal domain; Region:
Ribosomal_L2_C; pfam03947"
/db_xref="CDD:202823"
gene 194429..194698
/gene="rpsS"
/locus_tag="Rmag_0169"
/db_xref="GeneID:4554667"
CDS 194429..194698
/gene="rpsS"
/locus_tag="Rmag_0169"
/note="protein S19 forms a complex with S13 that binds
strongly to the 16S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S19"
/protein_id="YP_903432.1"
/db_xref="GI:118602217"
/db_xref="InterPro:IPR002222"
/db_xref="InterPro:IPR005732"
/db_xref="GeneID:4554667"
/translation="MARSLRKGPFIDEHLIKKVLVAQEKNDRKPIKTWSRRSVVVPEM
IGLTIAVHNGRVHVPVSINENMIGHKLGEFAITRTFKGHSGDRKV"
misc_feature 194429..194695
/gene="rpsS"
/locus_tag="Rmag_0169"
/note="30S ribosomal protein S19; Reviewed; Region: rpsS;
PRK00357"
/db_xref="CDD:178985"
gene 194713..195045
/gene="rplV"
/locus_tag="Rmag_0170"
/db_xref="GeneID:4554668"
CDS 194713..195045
/gene="rplV"
/locus_tag="Rmag_0170"
/note="binds specifically to 23S rRNA during the early
stages of 50S assembly; makes contact with all 6 domains
of the 23S rRNA in the assembled 50S subunit and ribosome;
mutations in this gene result in erythromycin resistance;
located near peptidyl-transferase center"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L22"
/protein_id="YP_903433.1"
/db_xref="GI:118602218"
/db_xref="InterPro:IPR001063"
/db_xref="InterPro:IPR005727"
/db_xref="GeneID:4554668"
/translation="MKEVKAIHKYAKTSAFKVRLVANQIRLKSVDEALNILSFSNKKA
AVLIKKVLNSAISNAEHNDGLDIDELFVASICIDEGSTMKRIRPRAKGKANRILKRTS
HITVGVSK"
misc_feature 194722..195036
/gene="rplV"
/locus_tag="Rmag_0170"
/note="Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that interacts
with all six domains of 23S rRNA, and is one of the
proteins important for directing the proper...; Region:
Ribosomal_L22; cd00336"
/db_xref="CDD:48343"
misc_feature order(194722..194727,194791..194799,194803..194808,
194812..194817,194878..194895,194920..194937,
195031..195036)
/gene="rplV"
/locus_tag="Rmag_0170"
/note="putative translocon binding site; other site"
/db_xref="CDD:48343"
misc_feature order(194731..194733,194737..194739,194746..194748,
194752..194760,194767..194769,194779..194781,
194788..194790,194872..194874,194884..194886,
194893..194895,194932..194934,194938..194946,
194950..194952,194959..194961,194995..195012)
/gene="rplV"
/locus_tag="Rmag_0170"
/note="protein-rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:48343"
gene 195053..195751
/locus_tag="Rmag_0171"
/db_xref="GeneID:4554669"
CDS 195053..195751
/locus_tag="Rmag_0171"
/note="KEGG: pae:PA4257 30S ribosomal protein S3;
TIGRFAM: ribosomal protein S3;
PFAM: ribosomal protein S3-C-terminal domain protein; KH,
type 2 domain protein; Ribosomal protein S3, N-terminal
domain;
SMART: KH domain protein"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S3"
/protein_id="YP_903434.1"
/db_xref="GI:118602219"
/db_xref="InterPro:IPR001351"
/db_xref="InterPro:IPR004044"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR005704"
/db_xref="InterPro:IPR008282"
/db_xref="GeneID:4554669"
/translation="MGQKVNPKGIRLGIVKDWDSKWYANSQDYSKYLLSDIKVRDYLF
DKLTNASVSRIQIERLANNAKITIHTARPGIIIGKKGADIEQLKSIVSKMMGIPVHIN
IEEIKKPELDARLVAENIAQQLEKRVMYRRAVKRVLGNTTRLGAKGIKVMVNGRLNGA
EIARSEWYREGRVPLHTFRADVDYSSYGANTQYGVIGIKVWIFKGEILNHKKGTLDEV
ARRGATNQIAQKIK"
misc_feature 195053..195730
/locus_tag="Rmag_0171"
/note="30S ribosomal protein S3; Reviewed; Region: rpsC;
PRK00310"
/db_xref="CDD:178972"
misc_feature 195056..195379
/locus_tag="Rmag_0171"
/note="K homology RNA-binding (KH) domain of the
prokaryotic 30S small ribosomal subunit protein S3. S3 is
part of the head region of the 30S ribosomal subunit and
is believed to interact with mRNA as it threads its way
from the latch into the channel. The KH...; Region:
30S_S3_KH; cd02412"
/db_xref="CDD:48410"
misc_feature 195284..195295
/locus_tag="Rmag_0171"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48410"
misc_feature 195407..195658
/locus_tag="Rmag_0171"
/note="Ribosomal protein S3, C-terminal domain; Region:
Ribosomal_S3_C; pfam00189"
/db_xref="CDD:201068"
gene 195764..196174
/gene="rplP"
/locus_tag="Rmag_0172"
/db_xref="GeneID:4554670"
CDS 195764..196174
/gene="rplP"
/locus_tag="Rmag_0172"
/note="located in the peptidyl transferase center and may
be involved in peptidyl transferase activity; similar to
archaeal L10e"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L16"
/protein_id="YP_903435.1"
/db_xref="GI:118602220"
/db_xref="InterPro:IPR000114"
/db_xref="GeneID:4554670"
/translation="MLQPKRTKFRKMMKGRNRGLATGYKVSFGEIGLQAVSRCRMTAR
QIESARRAMTRHVKRQGKIWIRVFPDKPITKKPLEVRMGKGKGSVEYWVAQIKPGQML
FEMQGVDEIIIREAFALAAAKLPVKTTIIKRTVM"
misc_feature 195827..196156
/gene="rplP"
/locus_tag="Rmag_0172"
/note="Ribosomal_L16_L10e: L16 is an essential protein in
the large ribosomal subunit of bacteria, mitochondria, and
chloroplasts. Large subunits that lack L16 are defective
in peptidyl transferase activity, peptidyl-tRNA hydrolysis
activity, association with...; Region: Ribosomal_L16_L10e;
cd01433"
/db_xref="CDD:88606"
misc_feature order(195827..195829,195833..195838,195845..195847,
195893..195898,195905..195907,195914..195916,
195926..195928,195935..195937,195953..195961,
195965..195967,195971..195973,195983..195988,
196007..196021,196061..196063,196115..196120,
196127..196132)
/gene="rplP"
/locus_tag="Rmag_0172"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88606"
misc_feature 195872..195877
/gene="rplP"
/locus_tag="Rmag_0172"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:88606"
misc_feature order(195908..195916,195923..195928)
/gene="rplP"
/locus_tag="Rmag_0172"
/note="putative antibiotic binding site [chemical
binding]; other site"
/db_xref="CDD:88606"
misc_feature order(195935..195937,195944..195949,195953..195955,
196079..196081)
/gene="rplP"
/locus_tag="Rmag_0172"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:88606"
misc_feature order(196001..196006,196013..196018)
/gene="rplP"
/locus_tag="Rmag_0172"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:88606"
gene 196174..196362
/locus_tag="Rmag_0173"
/db_xref="GeneID:4554671"
CDS 196174..196362
/locus_tag="Rmag_0173"
/note="one of the stabilizing components for the large
ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L29"
/protein_id="YP_903436.1"
/db_xref="GI:118602221"
/db_xref="InterPro:IPR001854"
/db_xref="GeneID:4554671"
/translation="MNVKELRNQDVSTLNETLIKLLKKHFELRMQHKSAQLDDASKLG
KTKRSIAQVKTIIRQKQV"
misc_feature 196183..196353
/locus_tag="Rmag_0173"
/note="Ribosomal L29 protein/HIP. L29 is a protein of the
large ribosomal Subunit. A homolog, called heparin/heparan
sulfate interacting protein (HIP), has also been
identified in mammals. L29 is located on the surface of
the large ribosomal subunit, where it...; Region:
Ribosomal_L29_HIP; cd00427"
/db_xref="CDD:88602"
misc_feature order(196183..196185,196192..196194,196294..196296,
196324..196329,196333..196338,196348..196350)
/locus_tag="Rmag_0173"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88602"
misc_feature order(196183..196191,196195..196197,196207..196212,
196216..196221,196228..196233,196240..196245,
196252..196254,196261..196266,196288..196290,
196297..196299,196309..196311,196318..196323,
196330..196335,196342..196344)
/locus_tag="Rmag_0173"
/note="putative translocon interaction site; other site"
/db_xref="CDD:88602"
misc_feature order(196231..196233,196243..196245,196252..196254,
196264..196266,196309..196311)
/locus_tag="Rmag_0173"
/note="signal recognition particle (SRP54) interaction
site; other site"
/db_xref="CDD:88602"
misc_feature order(196249..196251,196258..196263)
/locus_tag="Rmag_0173"
/note="L23 interface [polypeptide binding]; other site"
/db_xref="CDD:88602"
misc_feature 196270..196275
/locus_tag="Rmag_0173"
/note="trigger factor interaction site; other site"
/db_xref="CDD:88602"
gene 196359..196625
/locus_tag="Rmag_0174"
/db_xref="GeneID:4555420"
CDS 196359..196625
/locus_tag="Rmag_0174"
/note="PFAM: ribosomal protein S17;
KEGG: ppu:PP0463 ribosomal protein S17"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S17"
/protein_id="YP_903437.1"
/db_xref="GI:118602222"
/db_xref="InterPro:IPR000266"
/db_xref="GeneID:4555420"
/translation="MSEKKVERVLTGTVVSNNRNKTIAVLIERKVRHPIYKKYIKRST
KVHAHDEKNKCALGDLVRVVEAKPFSKTKHWALLEVVEKSVFVD"
misc_feature 196365..196613
/locus_tag="Rmag_0174"
/note="30S ribosomal protein S17; Reviewed; Region: rpsQ;
PRK05610"
/db_xref="CDD:180162"
gene 196654..197022
/gene="rplN"
/locus_tag="Rmag_0175"
/db_xref="GeneID:4555421"
CDS 196654..197022
/gene="rplN"
/locus_tag="Rmag_0175"
/note="binds to the 23S rRNA between the centers for
peptidyl transferase and GTPase"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L14"
/protein_id="YP_903438.1"
/db_xref="GI:118602223"
/db_xref="InterPro:IPR000218"
/db_xref="InterPro:IPR005745"
/db_xref="GeneID:4555421"
/translation="MIQMQTKLKVADNSGGVKAMCIKVLGGSKRRYANIGDVIKVSIK
EAASRGKVKKGDVYDAVVVRTAHGVRRSDGSCIRFDNNAIVLLNTKLEPIGTRIFGPV
TRELRSAQFMKIVSLAPEVL"
misc_feature 196654..197019
/gene="rplN"
/locus_tag="Rmag_0175"
/note="50S ribosomal protein L14; Validated; Region: rplN;
PRK05483"
/db_xref="CDD:180117"
gene 197022..197333
/gene="rplX"
/locus_tag="Rmag_0176"
/db_xref="GeneID:4555422"
CDS 197022..197333
/gene="rplX"
/locus_tag="Rmag_0176"
/note="assembly initiator protein; binds to 5' end of 23S
rRNA and nucleates assembly of the 50S; surrounds
polypeptide exit tunnel"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L24"
/protein_id="YP_903439.1"
/db_xref="GI:118602224"
/db_xref="InterPro:IPR003256"
/db_xref="InterPro:IPR005824"
/db_xref="InterPro:IPR006646"
/db_xref="GeneID:4555422"
/translation="MKKIKLNDEVIIITGKNKDSTGAVIKVLDSKVLVEGLNLAKKHV
RSNPNAGVTGGITEIEVPLAVSNVAIYNSATKKADRVGIRTNKDGIKERFFKSNNEVI
V"
misc_feature 197022..197327
/gene="rplX"
/locus_tag="Rmag_0176"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK00004"
/db_xref="CDD:178786"
misc_feature 197028..197228
/gene="rplX"
/locus_tag="Rmag_0176"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK12281"
/db_xref="CDD:183399"
gene 197356..197895
/gene="rplE"
/locus_tag="Rmag_0177"
/db_xref="GeneID:4555423"
CDS 197356..197895
/gene="rplE"
/locus_tag="Rmag_0177"
/note="part of 50S and 5S/L5/L18/L25 subcomplex; contacts
5S rRNA and P site tRNA; forms a bridge to the 30S subunit
in the ribosome by binding to S13"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L5"
/protein_id="YP_903440.1"
/db_xref="GI:118602225"
/db_xref="InterPro:IPR002132"
/db_xref="InterPro:IPR003236"
/db_xref="GeneID:4555423"
/translation="MSRLQEQYKNEILPALQKELDMSNPMQVPKIEKITINMGLGSAL
GDKKVLQSALKEMSLISGQKPLICNARKSVASFKLREGNPIGCKVTLRKERMYEFLDR
LINIAIPRIRDFRGFKATAFDGRGNYNMGITEQITFAEIDFEKVTRILGMDIAITTTA
KSDEEAKKLLVMFKFPFKG"
misc_feature 197356..197889
/gene="rplE"
/locus_tag="Rmag_0177"
/note="50S ribosomal protein L5; Validated; Region: rplE;
PRK00010"
/db_xref="CDD:178791"
misc_feature 197425..197595
/gene="rplE"
/locus_tag="Rmag_0177"
/note="Ribosomal protein L5; Region: Ribosomal_L5;
pfam00281"
/db_xref="CDD:109342"
misc_feature 197605..197889
/gene="rplE"
/locus_tag="Rmag_0177"
/note="ribosomal L5P family C-terminus; Region:
Ribosomal_L5_C; pfam00673"
/db_xref="CDD:201383"
gene 197901..198206
/gene="rpsN"
/locus_tag="Rmag_0178"
/db_xref="GeneID:4555424"
CDS 197901..198206
/gene="rpsN"
/locus_tag="Rmag_0178"
/note="located in the peptidyl transferase center and
involved in assembly of 30S ribosome subunit; similar to
what is observed with proteins L31 and L33, some proteins
in this family contain CXXC motifs that are involved in
zinc binding; if two copies are present in a genome, then
the duplicated copy appears to have lost the zinc-binding
motif and is instead regulated by zinc; the proteins in
this group do not appear to have the zinc-binding motif"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S14"
/protein_id="YP_903441.1"
/db_xref="GI:118602226"
/db_xref="InterPro:IPR001209"
/db_xref="GeneID:4555424"
/translation="MAKKSMINRDIKRTKLVEKYKVKRLELKKIIKSINVSDEERFQA
TIKLQALPRDASPTRQRNRCALTGRPHGFYRKFGLARTKLRERTMNGEAPGLSKASW"
misc_feature 197901..198203
/gene="rpsN"
/locus_tag="Rmag_0178"
/note="30S ribosomal protein S14; Reviewed; Region: rpsN;
PRK08881"
/db_xref="CDD:181574"
gene 198218..198613
/gene="rpsH"
/locus_tag="Rmag_0179"
/db_xref="GeneID:4555425"
CDS 198218..198613
/gene="rpsH"
/locus_tag="Rmag_0179"
/note="binds directly to 16S rRNA central domain where it
helps coordinate assembly of the platform of the 30S
subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S8"
/protein_id="YP_903442.1"
/db_xref="GI:118602227"
/db_xref="InterPro:IPR000630"
/db_xref="GeneID:4555425"
/translation="MSMSDPIADMLTRIRNAQMVEKKEVNVPASNLKSAIASVMQEEG
YIKSFSVDGIAASKTLNIKLKYYDNKSVIEKLKRISKPSLRVYVSSSQMPSVMNGLGI
VIVSTPKGVMTGQTAYEQNIGGEVLCSVY"
misc_feature 198221..198610
/gene="rpsH"
/locus_tag="Rmag_0179"
/note="30S ribosomal protein S8; Validated; Region: rpsH;
PRK00136"
/db_xref="CDD:178892"
gene 198629..199174
/gene="rplF"
/locus_tag="Rmag_0180"
/db_xref="GeneID:4555426"
CDS 198629..199174
/gene="rplF"
/locus_tag="Rmag_0180"
/note="ribosomal protein L6 appears to have arisen as a
result of an ancient gene duplication as based on
structural comparison of the Bacillus stearothermophilus
protein; RNA-binding appears to be in the C-terminal
domain; mutations in the L6 gene confer resistance to
aminoglycoside antibiotics such as gentamicin and these
occur in truncations of the C-terminal domain; it has been
localized to a region between the base of the L7/L12 stalk
and the central protuberance"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L6"
/protein_id="YP_903443.1"
/db_xref="GI:118602228"
/db_xref="InterPro:IPR000702"
/db_xref="InterPro:IPR002358"
/db_xref="GeneID:4555426"
/translation="MSRVAKSPITIPTGVEVTITSNLMSVKGRFGQLNMSIHPCIVIT
NTNNKLSFDITITEKKEQKKAWAQAGTARANTANLIQGVTEGWEKKLTLIGVGYRAKV
MERVLNLTLGFSHPINYKLPEGITVEAPSQTEIIIKGMDKQKVGQVAAEIRAYHPPEP
YKGKGVCYIDEQVVRKEAKKK"
misc_feature 198629..199171
/gene="rplF"
/locus_tag="Rmag_0180"
/note="50S ribosomal protein L6; Validated; Region: rplF;
PRK05498"
/db_xref="CDD:180118"
misc_feature 198908..199126
/gene="rplF"
/locus_tag="Rmag_0180"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:109407"
gene 199192..199539
/gene="rplR"
/locus_tag="Rmag_0181"
/db_xref="GeneID:4555427"
CDS 199192..199539
/gene="rplR"
/locus_tag="Rmag_0181"
/note="binds 5S rRNA along with protein L5 and L25"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L18"
/protein_id="YP_903444.1"
/db_xref="GI:118602229"
/db_xref="InterPro:IPR004389"
/db_xref="InterPro:IPR005484"
/db_xref="GeneID:4555427"
/translation="MKLSKKQARLRRATKFRAKHAQGSTKRLCVHKTAQHIYAQIISP
CGTKVLASASTLTAKLKNGGNVDAATKVGKEIAKAATSVKVIKVAFDRSGFKYHGRVK
ALADAAREGGLDF"
misc_feature 199270..199530
/gene="rplR"
/locus_tag="Rmag_0181"
/note="Ribosomal L18/L5e: L18 (L5e) is a ribosomal
protein found in the central protuberance (CP) of the
large subunit. L18 binds 5S rRNA and induces a
conformational change that stimulates the binding of L5 to
5S rRNA. Association of 5S rRNA with 23S rRNA...; Region:
Ribosomal_L18_L5e; cd00432"
/db_xref="CDD:88603"
misc_feature order(199270..199272,199282..199299,199303..199305,
199309..199311,199330..199338,199345..199347,
199456..199458,199489..199491)
/gene="rplR"
/locus_tag="Rmag_0181"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:88603"
misc_feature order(199459..199461,199468..199470,199516..199518)
/gene="rplR"
/locus_tag="Rmag_0181"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88603"
misc_feature 199474..199476
/gene="rplR"
/locus_tag="Rmag_0181"
/note="L5 interface [polypeptide binding]; other site"
/db_xref="CDD:88603"
gene 199583..200101
/gene="rpsE"
/locus_tag="Rmag_0182"
/db_xref="GeneID:4555428"
CDS 199583..200101
/gene="rpsE"
/locus_tag="Rmag_0182"
/note="located at the back of the 30S subunit body where
it stabilizes the conformation of the head with respect to
the body; contacts S4 and S8; with S4 and S12 plays a role
in translational accuracy; mutations in this gene result
in spectinomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S5"
/protein_id="YP_903445.1"
/db_xref="GI:118602230"
/db_xref="InterPro:IPR000851"
/db_xref="InterPro:IPR005324"
/db_xref="InterPro:IPR005712"
/db_xref="GeneID:4555428"
/translation="MAEYKKNNNNDDKDYIEKLVNIRRVVKVVKGGRIFGFSALVVVG
DGNGKVGYGTGKAREVPVAIQKAMDKARKRMKSVSLVNGTLHYPIVSSVGAAKVYMQP
ASEGTGVIAGGPMRSVLEAVGVHNILAKCNGTRNPISVVRATVEGLTSMSSPQLVAAK
RGKTVDQITRKG"
misc_feature 199625..200086
/gene="rpsE"
/locus_tag="Rmag_0182"
/note="30S ribosomal protein S5; Validated; Region: rpsE;
PRK00550"
/db_xref="CDD:179061"
misc_feature <199694..199822
/gene="rpsE"
/locus_tag="Rmag_0182"
/note="Ribosomal protein S5, N-terminal domain; Region:
Ribosomal_S5; pfam00333"
/db_xref="CDD:144065"
misc_feature 199862..200068
/gene="rpsE"
/locus_tag="Rmag_0182"
/note="Ribosomal protein S5, C-terminal domain; Region:
Ribosomal_S5_C; pfam03719"
/db_xref="CDD:190724"
gene 200101..200421
/gene="rpmD"
/locus_tag="Rmag_0183"
/db_xref="GeneID:4555429"
CDS 200101..200421
/gene="rpmD"
/locus_tag="Rmag_0183"
/note="L30 binds domain II of the 23S rRNA and the 5S
rRNA; similar to eukaryotic protein L7"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L30"
/protein_id="YP_903446.1"
/db_xref="GI:118602231"
/db_xref="InterPro:IPR000517"
/db_xref="InterPro:IPR005996"
/db_xref="GeneID:4555429"
/translation="MVEENKIVKKVIVTKKPTIKKAPVKAAFKKEVVVKNATVIKKTQ
TSSKRNTVNITLVKSFHGRLPSHRATIVGLGLKRINHIKELKDTPEIRGMINKVAYLL
KVED"
misc_feature 200260..200415
/gene="rpmD"
/locus_tag="Rmag_0183"
/note="Ribosomal protein L30, which is found in eukaryotes
and prokaryotes but not in archaea, is one of the smallest
ribosomal proteins with a molecular mass of about 7kDa.
L30 binds the 23SrRNA as well as the 5S rRNA and is one of
five ribosomal proteins that...; Region: Ribosomal_L30;
cd01658"
/db_xref="CDD:100100"
misc_feature order(200272..200277,200281..200286,200290..200298,
200305..200310,200317..200325,200329..200331,
200338..200340,200353..200358,200365..200373,
200377..200382)
/gene="rpmD"
/locus_tag="Rmag_0183"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:100100"
gene 200426..200869
/gene="rplO"
/locus_tag="Rmag_0184"
/db_xref="GeneID:4555430"
CDS 200426..200869
/gene="rplO"
/locus_tag="Rmag_0184"
/note="late assembly protein"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L15"
/protein_id="YP_903447.1"
/db_xref="GI:118602232"
/db_xref="InterPro:IPR001196"
/db_xref="InterPro:IPR005749"
/db_xref="GeneID:4555430"
/translation="MNVMQLNTLSPIQGEKQSRKRVGRGIGSGFGKTCGRGHKGQKAR
SGGFRKVGFEGGQMPLQRRLPKVGFSSRVSIVTSQVTLSEIDRLTETDITIDALKAHN
LITKNIKRVKVILSGEIIKTVTLTGIKTTKGAKLAIEAVKGLVNE"
misc_feature 200435..200866
/gene="rplO"
/locus_tag="Rmag_0184"
/note="50S ribosomal protein L15; Reviewed; Region: rplO;
PRK05592"
/db_xref="CDD:180155"
gene 200873..202171
/locus_tag="Rmag_0185"
/db_xref="GeneID:4555431"
CDS 200873..202171
/locus_tag="Rmag_0185"
/note="TIGRFAM: preprotein translocase, SecY subunit;
PFAM: SecY protein;
KEGG: noc:Noc_2305 SecY protein"
/codon_start=1
/transl_table=11
/product="protein translocase subunit secY/sec61 alpha"
/protein_id="YP_903448.1"
/db_xref="GI:118602233"
/db_xref="InterPro:IPR002208"
/db_xref="GeneID:4555431"
/translation="MKQSLGLSQDLSKRILFLLGALIVFRLGTHITIPFISSAALASL
VQDQQGTILDMFNMFSGGALERLSIFTLGIMPYISASIIIQLMTSIVPKLEQLKKEGE
TGKRKITQYTRIGTVVLAIFQSYGISIALQSQSSGGIALVTQGDFTFNMVTVVTLTTG
TLFLMWLGEQITEKGIGNGISMIIFAGIVSGLPSALGSTLSLVATGELTIILVVILLI
MTLLVTAFVVFMERGQRRITVNYAKRQQGRKMVSGQSSYLPLKINMAGVIPPIFASSI
ILFPATLGGWFSQSEGMDWLADLTASISPGQPLYVLFYGLAIVFFTFFYTALTFDSKD
TADNLRKSGGFIPGIRPGKHSADYIDLVMSRLTASGAIYITAVCLLPEFLILYWNVPF
YFGGTSLLIIVVVVMDFIAQAQSHLMSNQYESLMKKTGLN"
sig_peptide 200873..201001
/locus_tag="Rmag_0185"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.797) with cleavage site probability 0.690 at
residue 43"
misc_feature 200900..202150
/locus_tag="Rmag_0185"
/note="preprotein translocase subunit SecY; Reviewed;
Region: secY; PRK09204"
/db_xref="CDD:181698"
misc_feature 201074..202102
/locus_tag="Rmag_0185"
/note="SecY translocase; Region: SecY; pfam00344"
/db_xref="CDD:201169"
gene 202185..202298
/gene="rpmJ"
/locus_tag="Rmag_0186"
/db_xref="GeneID:4555432"
CDS 202185..202298
/gene="rpmJ"
/locus_tag="Rmag_0186"
/note="smallest protein in the large subunit; similar to
what is found with protein L31 and L33 several bacterial
genomes contain paralogs which may be regulated by zinc;
the protein from Thermus thermophilus has a zinc-binding
motif and contains a bound zinc ion; the proteins in this
group have the motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L36"
/protein_id="YP_903449.1"
/db_xref="GI:118602234"
/db_xref="InterPro:IPR000473"
/db_xref="GeneID:4555432"
/translation="MKVRASVKKICNNCKIIKRHGVVRVICKEPRHKQRQG"
misc_feature 202185..202295
/gene="rpmJ"
/locus_tag="Rmag_0186"
/note="50S ribosomal protein L36; Reviewed; Region: rpmJ;
PRK00465"
/db_xref="CDD:179039"
gene 202454..202807
/gene="rpsM"
/locus_tag="Rmag_0187"
/db_xref="GeneID:4555433"
CDS 202454..202807
/gene="rpsM"
/locus_tag="Rmag_0187"
/note="located at the top of the head of the 30S subunit,
it contacts several helices of the 16S rRNA; makes contact
with the large subunit via RNA-protein interactions and
via protein-protein interactions with L5; contacts P-site
tRNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S13"
/protein_id="YP_903450.1"
/db_xref="GI:118602235"
/db_xref="InterPro:IPR001892"
/db_xref="GeneID:4555433"
/translation="MARIAGINIPTHKHIVIGLQSIFGIGDTRAKATCKILKLDPATK
VVDIAEDQLELIRAEVAKYEVEGDLRRQVSMDIKRLKDLGCYRGVRHRKSLPLRGQRT
KTNARTRKGPRRLIK"
misc_feature 202454..202804
/gene="rpsM"
/locus_tag="Rmag_0187"
/note="30S ribosomal protein S13; Validated; Region: rpsM;
PRK05179"
/db_xref="CDD:179955"
misc_feature 202460..202795
/gene="rpsM"
/locus_tag="Rmag_0187"
/note="30S ribosomal protein S13; Region: bact_S13;
TIGR03631"
/db_xref="CDD:211853"
gene 202823..203206
/locus_tag="Rmag_0188"
/db_xref="GeneID:4555434"
CDS 202823..203206
/locus_tag="Rmag_0188"
/note="located on the platform of the 30S subunit, it
bridges several disparate RNA helices of the 16S rRNA;
forms part of the Shine-Dalgarno cleft in the 70S
ribosome; interacts with S7 and S18 and IF-3"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S11"
/protein_id="YP_903451.1"
/db_xref="GI:118602236"
/db_xref="InterPro:IPR001971"
/db_xref="GeneID:4555434"
/translation="MAKTPTRKKSKKVIIDGIAHIHATFNNTIVMITDRHGNAICWSA
SGGSGFRGSRKSTPFAAQVTAGSCGEKALAFGMKNLEVRVKGPGPGRDSAIRGLNAQG
LKIQSITDVTPIPHNGCRPSKKRRV"
misc_feature 202823..203203
/locus_tag="Rmag_0188"
/note="30S ribosomal protein S11; Validated; Region:
PRK05309"
/db_xref="CDD:180007"
gene 203216..203842
/locus_tag="Rmag_0189"
/db_xref="GeneID:4555435"
CDS 203216..203842
/locus_tag="Rmag_0189"
/note="PFAM: ribosomal protein S4; RNA-binding S4 domain
protein;
KEGG: sgl:SG2254 30S ribosomal protein S4"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S4"
/protein_id="YP_903452.1"
/db_xref="GI:118602237"
/db_xref="InterPro:IPR001912"
/db_xref="InterPro:IPR002942"
/db_xref="InterPro:IPR005709"
/db_xref="GeneID:4555435"
/translation="MARYTGPTCKLARREGTDLFLKSGIRSLDSKCNVTQLPGMHGAN
ARRQKGTEYGLQLREKQKVRRIYGILEKQFRLYYKKASQKKGSTGENLLSLLECRLDN
VVYRMGFGSTRAEARQLVSHKSILMNGLVVNIPSYQVSVNDEISIREKAKKQSRIQLA
LELAEQSTQPQWLDIDHKALKGVFKNVPARDELSSDIQEHLIVELYSK"
misc_feature 203216..203839
/locus_tag="Rmag_0189"
/note="30S ribosomal protein S4; Validated; Region: rpsD;
PRK05327"
/db_xref="CDD:180018"
misc_feature 203219..203506
/locus_tag="Rmag_0189"
/note="Ribosomal protein S4/S9 N-terminal domain; Region:
Ribosomal_S4; pfam00163"
/db_xref="CDD:201048"
misc_feature 203510..203686
/locus_tag="Rmag_0189"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(203510..203512,203546..203551,203555..203560,
203564..203569,203576..203581,203585..203587,
203606..203629,203633..203635)
/locus_tag="Rmag_0189"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 203855..204835
/locus_tag="Rmag_0190"
/db_xref="GeneID:4555436"
CDS 203855..204835
/locus_tag="Rmag_0190"
/EC_number="2.7.7.6"
/note="catalyzes the transcription of DNA into RNA using
the four ribonucleoside triphosphates as substrates.
Dimerization of the alpha subunit is the first step in the
sequential assembly of subunits to form the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit alpha"
/protein_id="YP_903453.1"
/db_xref="GI:118602238"
/db_xref="InterPro:IPR011260"
/db_xref="InterPro:IPR011261"
/db_xref="InterPro:IPR011262"
/db_xref="InterPro:IPR011263"
/db_xref="InterPro:IPR011773"
/db_xref="GeneID:4555436"
/translation="MQGSARNFLKPKLVESSQTGVNEFKVILEPLERGFGHTLGNALR
RTLLSSMTGSAVTEVAIDGVMHEFSTIEGVQEDVLDILLNLKEVSVMLNTAETAQVVI
EKKGPCEITVADIEANGIDITAFNPDKVIATINDESHMRMTLKISTGIGYDTATSRTD
EASSIGGMQLDASFSPIRRVSFTVDAARVKQKVNLDKLNITIETNGSVNAEVAIKRAA
IILQEQLSSFVELELVEEEEALPTSEDFDPQLLAAVDELELTVRSANCLKAEQIYYIG
DLIQKSEQDLLRTPNLGRKSLNEIKEVLTEKGLNLATSIENWPPVDLMSE"
misc_feature 203870..204787
/locus_tag="Rmag_0190"
/note="DNA-directed RNA polymerase subunit alpha;
Provisional; Region: PRK05182"
/db_xref="CDD:179956"
misc_feature 203894..204514
/locus_tag="Rmag_0190"
/note="N-terminal domain of the Alpha subunit of Bacterial
RNA polymerase; Region: RNAP_alpha_NTD; cd06928"
/db_xref="CDD:132904"
misc_feature order(203894..203896,203900..203902,203936..203938,
203945..203947,203951..203959,203966..203968,
203978..203980,203987..203992,204002..204004,
204506..204508)
/locus_tag="Rmag_0190"
/note="alphaNTD homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:132904"
misc_feature order(203927..203929,203963..203965,203975..203977,
203984..203989,204050..204052,204056..204058,
204062..204064,204068..204079,204092..204094,
204110..204112,204257..204259,204308..204310,
204365..204367,204371..204373,204389..204397,
204401..204412,204440..204442,204449..204451,
204455..204457)
/locus_tag="Rmag_0190"
/note="alphaNTD - beta interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature order(204056..204058,204092..204094,204101..204103,
204110..204115,204305..204310,204314..204316,
204371..204373,204386..204391,204416..204418)
/locus_tag="Rmag_0190"
/note="alphaNTD - beta' interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature 204584..204772
/locus_tag="Rmag_0190"
/note="Bacterial RNA polymerase, alpha chain C terminal
domain; Region: RNA_pol_A_CTD; pfam03118"
/db_xref="CDD:202541"
gene 204846..205244
/gene="rplQ"
/locus_tag="Rmag_0191"
/db_xref="GeneID:4555437"
CDS 204846..205244
/gene="rplQ"
/locus_tag="Rmag_0191"
/note="is a component of the macrolide binding site in the
peptidyl transferase center"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L17"
/protein_id="YP_903454.1"
/db_xref="GI:118602239"
/db_xref="InterPro:IPR000456"
/db_xref="GeneID:4555437"
/translation="MRHRKSGRQLNRNSSHRKAMFKNMANSLFLHETIRTTLSKAKEL
RRVVEPLITKAKIDSVANRRNIFSKLRDDAIVAKLFTELAPFYKDRPGGYIRILKAGF
RAGDKALMAIVQLVDFETTTDIVAETTDFS"
misc_feature 204855..205193
/gene="rplQ"
/locus_tag="Rmag_0191"
/note="50S ribosomal protein L17; Validated; Region: rplQ;
PRK05591"
/db_xref="CDD:180154"
gene 205255..205470
/gene="rpsU"
/locus_tag="Rmag_0192"
/db_xref="GeneID:4555438"
CDS 205255..205470
/gene="rpsU"
/locus_tag="Rmag_0192"
/note="a small basic protein that is one of the last in
the subunit assembly; omission does not prevent assembly
but the subunit is inactive; binds central domain of 16S
rRNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S21"
/protein_id="YP_903455.1"
/db_xref="GI:118602240"
/db_xref="InterPro:IPR001911"
/db_xref="GeneID:4555438"
/translation="MPSIKVRENEPFDIALRRFRRTCDRAGVITDVRKKEFYEKPTWV
NKRMKAAAVKRTHKEMAKNRVHRKRMY"
misc_feature 205255..205446
/gene="rpsU"
/locus_tag="Rmag_0192"
/note="30S ribosomal protein S21; Reviewed; Region: rpsU;
PRK00270"
/db_xref="CDD:178952"
gene 205544..205944
/locus_tag="Rmag_0193"
/pseudo
/db_xref="GeneID:4555473"
gene complement(207693..207839)
/locus_tag="Rmag_0194"
/pseudo
/db_xref="GeneID:4555474"
gene complement(208609..209161)
/locus_tag="Rmag_0195"
/pseudo
/db_xref="GeneID:4555475"
gene complement(209161..209529)
/locus_tag="Rmag_0196"
/db_xref="GeneID:4555439"
CDS complement(209161..209529)
/locus_tag="Rmag_0196"
/EC_number="1.8.4.11"
/note="KEGG: noc:Noc_2728 protein-methionine-S-oxide
reductase;
TIGRFAM: methionine-R-sulfoxide reductase;
PFAM: Methionine sulfoxide reductase B"
/codon_start=1
/transl_table=11
/product="methionine-R-sulfoxide reductase"
/protein_id="YP_903456.1"
/db_xref="GI:118602241"
/db_xref="InterPro:IPR002579"
/db_xref="GeneID:4555439"
/translation="MNLVKKLTPEQFRVTQQAGTEAPFTGKYYNYQEQGNYLCVCCHQ
ILFSFNTKFDSNMGWPSFSNASKSDSVKLITDNSHGMSRVEARCSNCDAHLGHVFSDG
PTSSGNRYCINSASLDFKPS"
misc_feature complement(209167..209523)
/locus_tag="Rmag_0196"
/note="methionine sulfoxide reductase B; Provisional;
Region: PRK00222; cl15841"
/db_xref="CDD:210241"
misc_feature complement(209167..209517)
/locus_tag="Rmag_0196"
/note="SelR domain; Region: SelR; pfam01641"
/db_xref="CDD:201899"
gene 209570..210658
/locus_tag="Rmag_0197"
/db_xref="GeneID:4555353"
CDS 209570..210658
/locus_tag="Rmag_0197"
/note="PFAM: Polynucleotide adenylyltransferase region;
KEGG: cbu:CBU_1827 tRNA nucleotidyltransferase (CCA-adding
enzyme)"
/codon_start=1
/transl_table=11
/product="polynucleotide adenylyltransferase region"
/protein_id="YP_903457.1"
/db_xref="GI:118602242"
/db_xref="InterPro:IPR002646"
/db_xref="GeneID:4555353"
/translation="MKVYLVGGAVRDQLLGIADEFTEKDWMVVGSSSKQMLDLGYRQV
GKNFPVFLHPGTQEEYALARLERKIGTGYKGFKFDISSQVTLEQDLFRRDLTINAMAQ
KAGELFDPFNGQEDLNNGILRHVSNAFSEDPVRILRIARFAARFKKFGFKVAHQTHQL
MSQMVTSGEVDALTPERVFKELNKALSYETPSAFFKVLTACGAYQKVFSSLDNQVHQN
HSNSFVFLDNLNTDKAHIKFSIWLKDENRHNIKALCNIIKCPKQYQQLSELVSQFYQF
SQDFTNHSSNEVFDFFAKTDILRHKDRFEDLLSTFKLLEIDIVPIEHLRDLLKDINIS
KLDKSDIAKAIQIEKRLIIDLFFKTVKK"
misc_feature 209570..210574
/locus_tag="Rmag_0197"
/note="tRNA CCA-pyrophosphorylase; Provisional; Region:
PRK13296"
/db_xref="CDD:106256"
misc_feature 209570..209926
/locus_tag="Rmag_0197"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature order(209588..209593,209600..209605,209636..209638,
209642..209644,209744..209746,209759..209761,
209843..209854,209861..209863)
/locus_tag="Rmag_0197"
/note="active site"
/db_xref="CDD:143388"
misc_feature order(209588..209593,209600..209602,209636..209638,
209642..209644,209843..209851,209861..209863)
/locus_tag="Rmag_0197"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature order(209636..209638,209642..209644,209744..209746)
/locus_tag="Rmag_0197"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature 210035..210208
/locus_tag="Rmag_0197"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:204988"
gene complement(210716..211002)
/locus_tag="Rmag_0198"
/pseudo
/db_xref="GeneID:4555476"
gene complement(212133..214607)
/locus_tag="Rmag_0199"
/db_xref="GeneID:4555354"
CDS complement(212133..214607)
/locus_tag="Rmag_0199"
/note="KEGG: nmu:Nmul_A0722 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903458.1"
/db_xref="GI:118602243"
/db_xref="GeneID:4555354"
/translation="MLINAELTELNAKDIIVLANNRQVLAFKKTFAIQRGNTQLPKAL
SWGQYLCYTWHQISPNSNLRFIDQIESRHLIKQSMQKLGQNTHQSLLDEVVKNNDYCA
NYLIDLSELTYSKIRSSELFSAWINAYKNTKLILGLIDLHDLPSLIIKTNTSITKPHI
YGFKTLTPQQKLLFDTIGYQQINAISTHNILTFTFDTTTSEIFKAAQWAKAHFDTNPD
KSVVIVSPQLSDIQHQLSSIFDQVFDNLLTEIEQKSYNISLRLHLNQYSLIQDLLSIL
TLSIQLQCNKIQSTLFNKVATCVYVSGYQQERSSRSLLMNQVLSLSVDEFSLDRIDKD
LSKCPILEAIINNIKREKPTNNTLESHLLNFNNMLKTWGFATDRNLSNTEYKLFNKYL
QTSLGLNQLSFYFGKVSTQSAITQLNNLTAQVIFQEQANKTNIQILDALEARGLYFDE
AWILGMTNQFLPTRLNSTRFIAHDISVTHQIPNTDYKLITTDAKNTLESLNSLANKVV
FSYALTHLGNEQLPSPLVEFNPTINTSHIQKIFPIPLESILDTNTSYLKKPQIKLGVR
ILKDQMACAFKGFAHRLDTTSFDAPHIGINRLEQGNIIHNVLQYIYQKITSKEQLLAL
NTKELDNLILNKINTVLKRHLNSSFKKIEKLRLSHLIHTFIEADKLREDFYVLTTEQN
ITANIANLEFETRLDRLDRMSNGDKIIFDYKTSTTSISSWYGSAISEPQLPIYAITNN
VQGAAFIELASNKINFKGLSKNPDSLPKQSKYKDKYQDWNKQLKIWQQTLNIASIDFQ
NGITTVLPNKNACNFCEFDLLCRIVK"
misc_feature complement(212142..214568)
/locus_tag="Rmag_0199"
/note="probable DNA repair protein; Region: TIGR03623"
/db_xref="CDD:163360"
misc_feature complement(212400..212894)
/locus_tag="Rmag_0199"
/note="PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1;
pfam12705"
/db_xref="CDD:205031"
gene complement(214597..215196)
/gene="engB"
/locus_tag="Rmag_0200"
/db_xref="GeneID:4555355"
CDS complement(214597..215196)
/gene="engB"
/locus_tag="Rmag_0200"
/note="binds guanine nucleotides; in Escherichia coli
depletion results in defective cell division and
filamentation; in Bacillus subtilis this gene is
essential"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTP-binding protein YsxC"
/protein_id="YP_903459.1"
/db_xref="GI:118602244"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR005289"
/db_xref="GeneID:4555355"
/translation="MHKHYHQAKFLLSCPSLKGCPPDEGYEVIFAGRSNAGKSSVINT
LTLQNKLAKVSRTPGKTQHFVFFELDKDRRLVDLPGYGYAKVPKRVKTKWHKDINEYF
NKRDCLRGTVLVMDIRHPFKLFDQMVLNWCHSINLSTQIILTKSDKLKKGAASNTYLK
VHNQIKKYPYVDVQLFSSLKKQGLEILGARLNTFFGYVD"
misc_feature complement(214609..215187)
/gene="engB"
/locus_tag="Rmag_0200"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature complement(214612..215118)
/gene="engB"
/locus_tag="Rmag_0200"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature complement(215080..215103)
/gene="engB"
/locus_tag="Rmag_0200"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(214663..214668,214756..214758,
214762..214764,214966..214968,215014..215022,
215029..215037,215077..215097))
/gene="engB"
/locus_tag="Rmag_0200"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature complement(215005..215025)
/gene="engB"
/locus_tag="Rmag_0200"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature complement(215014..215016)
/gene="engB"
/locus_tag="Rmag_0200"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature complement(214957..214968)
/gene="engB"
/locus_tag="Rmag_0200"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(214873..214878,214885..214929,
214948..214959))
/gene="engB"
/locus_tag="Rmag_0200"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature complement(214756..214767)
/gene="engB"
/locus_tag="Rmag_0200"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature complement(214660..214668)
/gene="engB"
/locus_tag="Rmag_0200"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene 215270..215560
/locus_tag="Rmag_0201"
/db_xref="GeneID:4555356"
CDS 215270..215560
/locus_tag="Rmag_0201"
/note="KEGG: sdn:Sden_1464 cytochrome c, class I"
/codon_start=1
/transl_table=11
/product="cytochrome c, class I"
/protein_id="YP_903460.1"
/db_xref="GI:118602245"
/db_xref="InterPro:IPR008169"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4555356"
/translation="MKRILLVVTVATFTMNFAQADGAADYAAGGCANCHGITGVSVIQ
IYPNLSGQNSAYTVKQLKDFQTGVRKDPTMNAMSKIVAGKEQSIADFLATQK"
sig_peptide 215270..215332
/locus_tag="Rmag_0201"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.988 at
residue 21"
misc_feature <215369..215557
/locus_tag="Rmag_0201"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene 215620..215913
/locus_tag="Rmag_0202"
/db_xref="GeneID:4555357"
CDS 215620..215913
/locus_tag="Rmag_0202"
/note="KEGG: mag:amb3084 cytochrome c4 precursor"
/codon_start=1
/transl_table=11
/product="cytochrome c4 precursor"
/protein_id="YP_903461.1"
/db_xref="GI:118602246"
/db_xref="InterPro:IPR008169"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4555357"
/translation="MQKILHYVLAMMTLSIALGVQASGKSVYNSLGCSSCHGIDGKPS
TSAYPTLAGKDAVWLVNQLKYFQFGVRKDPTMNAMVPIVAGYEQIIADYLSKQ"
misc_feature 215620..215910
/locus_tag="Rmag_0202"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
sig_peptide 215620..215688
/locus_tag="Rmag_0202"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.997) with cleavage site probability 0.895 at
residue 23"
gene 215942..216625
/locus_tag="Rmag_0203"
/db_xref="GeneID:4555358"
CDS 215942..216625
/locus_tag="Rmag_0203"
/note="PFAM: cytochrome c, class I;
KEGG: ppr:PBPRA3501 putative cytochrome c4"
/codon_start=1
/transl_table=11
/product="cytochrome c, class I"
/protein_id="YP_903462.1"
/db_xref="GI:118602247"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR008169"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4555358"
/translation="MYNPSSFVFNKTHLMNKLASIFIIVITFASINVSASGDVAKGKV
IAATCVVCHGVQGNSVVATFPKLAGQGEGYLLKQLQDFKSNTRKDVIMKNTVVSLTKD
DMENLAAYFSKQTITQGVVSKSANIALGEQLYKGGNKDKGVTACIACHGPIGAGIPSA
KFPALASQHVTYIIKQLVAFRQDAYNVQTGTNTPERNNDYEGMMRNITKYLDNKEIEA
VSQYIAGLH"
sig_peptide 215942..216049
/locus_tag="Rmag_0203"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.991) with cleavage site probability 0.791 at
residue 36"
misc_feature 215984..216349
/locus_tag="Rmag_0203"
/note="Cytochrome c553 [Energy production and conversion];
Region: COG2863"
/db_xref="CDD:32690"
misc_feature 216296..216619
/locus_tag="Rmag_0203"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene 216740..218029
/locus_tag="Rmag_0204"
/db_xref="GeneID:4555359"
CDS 216740..218029
/locus_tag="Rmag_0204"
/note="TIGRFAM: trigger factor;
PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor,
C-terminal domain protein; trigger factor, N-terminal
domain;
KEGG: hch:HCH_02157 trigger factor"
/codon_start=1
/transl_table=11
/product="trigger factor"
/protein_id="YP_903463.1"
/db_xref="GI:118602248"
/db_xref="InterPro:IPR001179"
/db_xref="InterPro:IPR005215"
/db_xref="InterPro:IPR008880"
/db_xref="InterPro:IPR008881"
/db_xref="GeneID:4555359"
/translation="MKASLEILKGLDRSLTVDLPIDIFNQKTDKILQKIASQVNFDGF
RKGKVPVAVVRKRFGNNVNSDAINEIVNETLTDALTQVKATPVSQPVISKIDSEDEKN
FSYTVDFEVFPEIKVADFSKLTIEQIKVEITKADEQRTLNGLKEQLTEYKAVKRKSEI
GDRLSIDFKGLIDGKTFDGAEAKDFKIVLGKGSMIKGFEEGLIDVTPNSMLMLDLVFP
KNYHMNKLSGKAVTFEININEVALPKEPKLNEVFAKKFGEKDMDALKVSIKMQMKVEI
DGRIGYLNKNAIFDALSEANQFDVPQSSIDNEAQNLLKEMKERIQQQGGLPAQGEIPA
SAFNDEAQRRVKLGLLVNQISNDNKLSASLEQIDAKLQEISQAHGKDTQKIIDSYNQD
PTKKLSIELLVIEKMVQDLILDKAKVTFKQKKFQEIT"
misc_feature 216740..218020
/locus_tag="Rmag_0204"
/note="trigger factor; Provisional; Region: tig; PRK01490"
/db_xref="CDD:179299"
misc_feature 217202..217450
/locus_tag="Rmag_0204"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; pfam00254"
/db_xref="CDD:201116"
misc_feature 217517..217975
/locus_tag="Rmag_0204"
/note="Bacterial trigger factor protein (TF) C-terminus;
Region: Trigger_C; pfam05698"
/db_xref="CDD:203309"
gene 218037..218633
/gene="clpP"
/locus_tag="Rmag_0205"
/db_xref="GeneID:4555360"
CDS 218037..218633
/gene="clpP"
/locus_tag="Rmag_0205"
/EC_number="3.4.21.92"
/note="hydrolyzes proteins to small peptides; with the
ATPase subunits ClpA or ClpX, ClpP degrades specific
substrates"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease proteolytic subunit"
/protein_id="YP_903464.1"
/db_xref="GI:118602249"
/db_xref="InterPro:IPR001907"
/db_xref="GeneID:4555360"
/translation="MDIENLNQIPIVVEQSARGERAYDIYSRLLKERIIFLVGPIEDY
MANVVVAQLLFLESENPDQDIHLYINSPGGLVSAGLAIYDTMQFIKPDVSTLCIGQAA
SMGALLLTAGAKDKRFALPNVRCMIHQPLGGFSGQASDIDIHAQEILKVREKLNQIFK
LHTSQTIKTIQKDTDRDNFMSANEATKYGLIDKVLAKR"
misc_feature 218088..218630
/gene="clpP"
/locus_tag="Rmag_0205"
/note="Clp protease; Region: CLP_protease; pfam00574"
/db_xref="CDD:201316"
misc_feature 218106..218618
/gene="clpP"
/locus_tag="Rmag_0205"
/note="Caseinolytic protease (ClpP) is an ATP-dependent,
highly conserved serine protease; Region: S14_ClpP_2;
cd07017"
/db_xref="CDD:132928"
misc_feature order(218142..218144,218148..218150,218175..218180,
218187..218192,218199..218201,218244..218246,
218265..218267,218277..218279,218286..218288,
218295..218300,218310..218312,218334..218336,
218400..218402,218406..218408,218424..218435,
218475..218477,218484..218486,218490..218492,
218496..218498,218565..218567,218571..218573)
/gene="clpP"
/locus_tag="Rmag_0205"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:132928"
misc_feature order(218343..218345,218418..218420,218565..218567)
/gene="clpP"
/locus_tag="Rmag_0205"
/note="active site residues [active]"
/db_xref="CDD:132928"
gene 218638..219903
/gene="clpX"
/locus_tag="Rmag_0206"
/db_xref="GeneID:4555361"
CDS 218638..219903
/gene="clpX"
/locus_tag="Rmag_0206"
/EC_number="3.4.21.92"
/note="binds and unfolds substrates as part of the ClpXP
protease"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease ATP-binding subunit ClpX"
/protein_id="YP_903465.1"
/db_xref="GI:118602250"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR004487"
/db_xref="InterPro:IPR010603"
/db_xref="InterPro:IPR013093"
/db_xref="GeneID:4555361"
/translation="MKDDNQELVCSFCGKGKSEVGRLIKGPGVFICNKCVESCHDLIE
DQASQEGVNEFEDWNYTPKQLNNFLNDYVIGQDHAKKVLSVAVYNHYKRLRSDYISNK
VELDKSNILMVGPTGSGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKNL
LSKCDFDPKRAQRGIIFIDEIDKISRRSDSPSITRDVSGEGVQQAMLKLIEGTVASVP
PQGGRKHPNQETIDVDTSKILFICGGAFDGLDKIINRRVEKVTGIGFAADVKDQKEKK
TLSDLFALIQPEDLIKFGLIPEFVGRLPVQTALSELDETALVKILIEPKNSVIKQFQE
IFFMEGVKLIFRNPSLLAIARLAIKRKIGARGLRSILEDLLLDTMFELPSLLDVTEVI
IDKAVVKKKKAPLIIYQSQKHSNKSKRVD"
misc_feature 218638..219873
/gene="clpX"
/locus_tag="Rmag_0206"
/note="ATP-dependent protease ATP-binding subunit ClpX;
Provisional; Region: clpX; PRK05342"
/db_xref="CDD:180029"
misc_feature 218659..218775
/gene="clpX"
/locus_tag="Rmag_0206"
/note="ClpX C4-type zinc finger; Region: zf-C4_ClpX;
pfam06689"
/db_xref="CDD:203502"
misc_feature 218857..>219279
/gene="clpX"
/locus_tag="Rmag_0206"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 218977..219000
/gene="clpX"
/locus_tag="Rmag_0206"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(218980..219003,219172..219174)
/gene="clpX"
/locus_tag="Rmag_0206"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 219160..219177
/gene="clpX"
/locus_tag="Rmag_0206"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 219571..219819
/gene="clpX"
/locus_tag="Rmag_0206"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene 219918..221243
/locus_tag="Rmag_0207"
/db_xref="GeneID:4555362"
CDS 219918..221243
/locus_tag="Rmag_0207"
/note="TIGRFAM: small GTP-binding protein;
PFAM: GTP-binding protein, HSR1-related;
KEGG: eca:ECA3933 putative GTP-binding phage-related
protein"
/codon_start=1
/transl_table=11
/product="small GTP-binding protein"
/protein_id="YP_903466.1"
/db_xref="GI:118602251"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006073"
/db_xref="GeneID:4555362"
/translation="MVLFEQQKDAIGKGERTLLVYVELTSNKQSHNAQVEFKELAESS
GLNIVKTIKVNCNSVLIRFFIGTGKVEEIAKIVEDSALDLVIFSPELSPSQERNLKKS
LKCQVMDRTGLILDIFALRASSFEGKLQVELAQLKHLSTRLIRGWTHLERQKGGIGLR
GPGETQLETDKRLIAIRIKNITKRLYKVHKQRDLGRKSRTKNELPMIALAGYTNAGKS
TLFNVLTNAEVFANDQLFATLNSTIRRVILPASGEAAIVDTVGFIQDLPHDLVDAFKS
TLEETKCANVLLHIVDAADEYNIEKIAQVEDIIFEIGASNIPSILVMNKIDCLDNFVP
RMDRDENGHIHRVWLSAQTGKGIDFLHQALAEQLSGMMTRAKVHLDVGSAYIRSNIHD
IGHIHHEKVDDFGAWVLEIFVTKHYLSKLLNFKGVTLLWEQSSPTNKLI"
misc_feature 219963..221021
/locus_tag="Rmag_0207"
/note="GTP-binding protein HflX; Region: GTP_HflX;
TIGR03156"
/db_xref="CDD:163162"
misc_feature 220023..220274
/locus_tag="Rmag_0207"
/note="GTP-binding GTPase N-terminal; Region: GTP-bdg_N;
pfam13167"
/db_xref="CDD:205348"
misc_feature 220407..221021
/locus_tag="Rmag_0207"
/note="HflX GTPase family; Region: HflX; cd01878"
/db_xref="CDD:206666"
misc_feature 220548..220571
/locus_tag="Rmag_0207"
/note="G1 box; other site"
/db_xref="CDD:206666"
misc_feature order(220557..220559,220563..220574,220887..220892,
220896..220898,220965..220973)
/locus_tag="Rmag_0207"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206666"
misc_feature 220611..220652
/locus_tag="Rmag_0207"
/note="Switch I region; other site"
/db_xref="CDD:206666"
misc_feature 220641..220643
/locus_tag="Rmag_0207"
/note="G2 box; other site"
/db_xref="CDD:206666"
misc_feature 220689..220700
/locus_tag="Rmag_0207"
/note="G3 box; other site"
/db_xref="CDD:206666"
misc_feature 220698..220769
/locus_tag="Rmag_0207"
/note="Switch II region; other site"
/db_xref="CDD:206666"
misc_feature 220887..220898
/locus_tag="Rmag_0207"
/note="G4 box; other site"
/db_xref="CDD:206666"
misc_feature 220965..220973
/locus_tag="Rmag_0207"
/note="G5 box; other site"
/db_xref="CDD:206666"
gene 221207..223543
/locus_tag="Rmag_0208"
/db_xref="GeneID:4555363"
CDS 221207..223543
/locus_tag="Rmag_0208"
/EC_number="3.4.21.53"
/note="KEGG: tbd:Tbd_1675 peptidase S16, ATP-dependent
protease La;
TIGRFAM: ATP-dependent protease La;
PFAM: peptidase S16, lon domain protein; AAA ATPase,
central domain protein; ATPase associated with various
cellular activities, AAA_5;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease La"
/protein_id="YP_903467.1"
/db_xref="GI:118602252"
/db_xref="InterPro:IPR001984"
/db_xref="InterPro:IPR003111"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR004815"
/db_xref="InterPro:IPR008268"
/db_xref="InterPro:IPR008269"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:4555363"
/translation="MGTELTNEQIDLSKSNIPLLPLRDVVVFPHTVIPLFVGRKTSVN
AITQAMGANKYIFLVTQKNDKVEEPLGDDLHQVGTLATILQMLKLPNGTIKVLVEGVR
RAKIEKIVQVDGFSEVSLSEFSLKSNDDTEIKAMMRLALDGFENYIKLNKRVPEEALK
VLQEVSDVERFSDIIIANLNLKVSEKQALLGDDNAQDRLNKILSIIQGEIDVLGTEKK
IQSRVRKQMESNQRDYYLNEQMKSIQKELGQAEDENEIEELQASIYKAKMSKEAKEKA
QSELKKLSRMSSHSSDASIIRTYIENLCDMPWKKKTVINKDLNKAQKILDDDHYGLDK
VKERILEHLAVQTRVTHNKANILCLVGPPGVGKTSLGESIARAVNRKYVRMALGGVRD
EAEIRGHRRTYIGAMPGSIIQKMQKAKVKNPLFLLDEIEKMASDYRGDPSSAMLEVLD
PEQNHTFNDHYLEVDYDLSQVMFVATANSLDLPQPLLDRMEIIELSGYTEDEKVEIAK
RHLTKKAMDSNGIKNSEIKFQDGAILDIIRYYTREAGVRGLSRTISTICRKVVKEVVL
KKRKTKANIDVKSLAKYLGVRKFRFGLAEQNNQVGEVTGLAWTSVGGDLLTIEATAYK
GKGKLNYTGQLGDVMQESIQAAKSVVRSRAKKFGIDENFDEKLDIHIHVPDGATPKDG
PSAGAAMITALVSVLTGRKVKSDVAMTGEITLRGEVTPIGGLKEKMLAALRGGIKTVI
IPDNNERELSEVPDKIKGKLKVIQVKWIDEVLDIALEK"
misc_feature 221246..223540
/locus_tag="Rmag_0208"
/note="ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones]; Region: Lon; COG0466"
/db_xref="CDD:30814"
misc_feature 221255..221500
/locus_tag="Rmag_0208"
/note="Found in ATP-dependent protease La (LON); Region:
LON; smart00464"
/db_xref="CDD:197740"
misc_feature 222212..222685
/locus_tag="Rmag_0208"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 222287..222310
/locus_tag="Rmag_0208"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(222290..222313,222488..222490,222629..222631)
/locus_tag="Rmag_0208"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 222476..222493
/locus_tag="Rmag_0208"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 222671..222673
/locus_tag="Rmag_0208"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 222926..223540
/locus_tag="Rmag_0208"
/note="Lon protease (S16) C-terminal proteolytic domain;
Region: Lon_C; pfam05362"
/db_xref="CDD:191262"
gene complement(224784..226049)
/locus_tag="Rmag_0209"
/db_xref="GeneID:4555364"
CDS complement(224784..226049)
/locus_tag="Rmag_0209"
/note="TIGRFAM: sun protein;
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44;
KEGG: hin:HI0624 Sun protein"
/codon_start=1
/transl_table=11
/product="sun protein"
/protein_id="YP_903468.1"
/db_xref="GI:118602253"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR001678"
/db_xref="InterPro:IPR004573"
/db_xref="InterPro:IPR006027"
/db_xref="InterPro:IPR006174"
/db_xref="GeneID:4555364"
/translation="MANNITRFIALEAIYSVIINKKSLSAFNYPKDNDTPLIKSLVFG
TIRFYHQLNDIVSKRLKHSFKKEDLDVHCLMLLGAYQLLYSKIAIHASIFETVNVVNA
LNKPWAKALVNAILRKIDRDKKILQQQVHYSHPSWLVKKIKRDYPNDFETIFKQNNTQ
APMTIRVHTSLNLDHYQQQLQQEGISSQKLAITPQALVLDKATTVFNLVKFEQGACYV
QDASAQLSVPLLNPKNTDLILDACSAPGGKATHLCELAPQCKVIALDNDNKRLIKISQ
NAQRLKITNIQTILGSAQNQDWWDSQLFDKILFDAPCSATGVIRRHPDIKLLRKPKDI
TTLVVLQKNILENLWQMLKPSGILLYATCSILKVENEQQIKYFLNTHYDAKEIKIELD
WGINTTVGRQQLPTDNFDGFYYAKIIKLT"
misc_feature complement(225687..226037)
/locus_tag="Rmag_0209"
/note="NusB family; Region: NusB; pfam01029"
/db_xref="CDD:201560"
misc_feature complement(224793..226034)
/locus_tag="Rmag_0209"
/note="16S rRNA methyltransferase B; Provisional; Region:
PRK10901"
/db_xref="CDD:182822"
misc_feature complement(226029..226034)
/locus_tag="Rmag_0209"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:29564"
misc_feature complement(224970..225338)
/locus_tag="Rmag_0209"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(225120..225122,225171..225179,
225252..225257,225309..225329))
/locus_tag="Rmag_0209"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(226039..226764)
/locus_tag="Rmag_0210"
/db_xref="GeneID:4555365"
CDS complement(226039..226764)
/locus_tag="Rmag_0210"
/note="KEGG: noc:Noc_2253 thiol-disulfide interchange
protein DsbC"
/codon_start=1
/transl_table=11
/product="thiol-disulfide interchange protein DsbC"
/protein_id="YP_903469.1"
/db_xref="GI:118602254"
/db_xref="GeneID:4555365"
/translation="MLKLLFITTVLFSNNAFADKNAIINTLYPFFGTIDKQYIINTPL
SDIFEITLRNLIDSLLVSKNDRYLIQNNVVDLTTTARQLIPMNGNVKLIKQALINTID
DHDKIIYPAKNEKYIIHVFTDVDCPFCKKLHNGMKQMNDLGITVKYLASPLASLHPAA
QGKMERIWCADDPVKAMDDYKKNKIILNLKTCHNPVANQLAISKQLGVNGVPTIFLED
GTHLLGYMTPAILLQKIKATIGK"
misc_feature complement(226066..226764)
/locus_tag="Rmag_0210"
/note="protein disulfide isomerase II DsbC; Provisional;
Region: PRK10877"
/db_xref="CDD:182802"
sig_peptide complement(226708..226764)
/locus_tag="Rmag_0210"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.999) with cleavage site probability 0.999 at
residue 19"
misc_feature complement(226060..226653)
/locus_tag="Rmag_0210"
/note="DsbA family, DsbC and DsbG subfamily; V-shaped
homodimeric proteins containing a redox active CXXC motif
imbedded in a TRX fold. They function as protein disulfide
isomerases and chaperones in the bacterial periplasm to
correct non-native disulfide bonds...; Region:
DsbA_DsbC_DsbG; cd03020"
/db_xref="CDD:48569"
misc_feature complement(order(226543..226590,226597..226632,
226639..226653))
/locus_tag="Rmag_0210"
/note="dimerization domain [polypeptide binding]; other
site"
/db_xref="CDD:48569"
misc_feature complement(226543..226566)
/locus_tag="Rmag_0210"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48569"
misc_feature complement(order(226378..226380,226387..226389))
/locus_tag="Rmag_0210"
/note="catalytic residues [active]"
/db_xref="CDD:48569"
gene 226850..228271
/locus_tag="Rmag_0211"
/db_xref="GeneID:4555366"
CDS 226850..228271
/locus_tag="Rmag_0211"
/EC_number="3.4.11.1"
/note="PFAM: peptidase M17, leucyl aminopeptidase domain
protein;
KEGG: noc:Noc_0289 leucyl aminopeptidase"
/codon_start=1
/transl_table=11
/product="leucyl aminopeptidase"
/protein_id="YP_903470.1"
/db_xref="GI:118602255"
/db_xref="InterPro:IPR000819"
/db_xref="InterPro:IPR008283"
/db_xref="GeneID:4555366"
/translation="MKFSLINETVQCFEGDSVVVFCNSNTVFDDKNIQKLITLNHFEP
KSERVLLLSLVSGFKSKQVIVAGLGDTPVDAKAYVKTLNTVSVVLAEIKAKNLMIQSV
KIIGFNESWVHKITAKVMHNATYKVQKIGDDKQGSDIEHIAIQSTMDNTSALMQGQAI
ADGMSLTRYLGDLPPNVCTPSYLADTAMSLAEEFNLEYEILEEADMNKLGMGSLLSVS
KGSIEPPKLISLSYQGNGNEKPIVLVGKGVTFDSGGISIKPGAGMDEMKYDMCGAASV
LGTMRTIAKIKLNINLVVVVPAVENMPAHNASKPGDVVKSMSGQTIEILNTDAEGRLI
LCDALTYVKKFNPNVVIDVATLTGAVIIALGKHNSGLMSNDQDLANDIICASKISLDG
VWQLPIEDEYDELLKSNFADMANIGGHEASSITAGCFLSRFTQDYRWAHLDIAGTAWV
SGEKKGATGRPVSLLTQFIMNQV"
misc_feature 226850..228265
/locus_tag="Rmag_0211"
/note="multifunctional aminopeptidase A; Provisional;
Region: PRK00913"
/db_xref="CDD:179165"
misc_feature 226934..228256
/locus_tag="Rmag_0211"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:48344"
misc_feature order(226964..226969,227009..227011,227033..227035,
227078..227080,227363..227365,227369..227377,
227507..227509,227513..227515,227597..227599,
227615..227617,227630..227632,227639..227641,
227648..227653,227747..227749,227753..227764,
227768..227770,227774..227788,227804..227806,
227810..227812,227822..227824,227930..227944,
227951..227953,228029..228034,228038..228040,
228053..228055,228059..228064,228077..228079,
228083..228085,228110..228115,228119..228121,
228212..228214)
/locus_tag="Rmag_0211"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:48344"
misc_feature order(227585..227587,227600..227602,227621..227623,
227654..227656,227831..227833,227837..227839,
227843..227845,227915..227917)
/locus_tag="Rmag_0211"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:48344"
misc_feature order(227585..227587,227600..227602,227654..227656,
227831..227833,227837..227839)
/locus_tag="Rmag_0211"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:48344"
gene complement(228858..229279)
/locus_tag="Rmag_0212"
/pseudo
/db_xref="GeneID:4555477"
gene complement(229409..230029)
/locus_tag="Rmag_0213"
/db_xref="GeneID:4555367"
CDS complement(229409..230029)
/locus_tag="Rmag_0213"
/note="KEGG: tcx:Tcr_0450 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903471.1"
/db_xref="GI:118602256"
/db_xref="GeneID:4555367"
/translation="MSGIVNLVKWLLIIIGTITTYYAVSLQIKYDGVTGKIISEIISP
KLHPESMAKVYMPMTNTLLDTGDTAMASIVRVKVADDVSNSDVEEAMESIAIAEGIRS
VGMLPLSEMVELQTGKKQRFLKIYQYCSPRIAMTMVDHSDAFSAYLPCRLALIEDKQG
QRWIYTLDMNAMIYGGAPLPDFLLKKALAVQKMIIAIQNGGAEGDF"
misc_feature complement(229523..229687)
/locus_tag="Rmag_0213"
/note="Domain of unknown function DUF302; Region: DUF302;
pfam03625"
/db_xref="CDD:202704"
gene complement(230131..230535)
/locus_tag="Rmag_0214"
/db_xref="GeneID:4555368"
CDS complement(230131..230535)
/locus_tag="Rmag_0214"
/note="PFAM: CBS domain containing protein;
KEGG: vvy:VV0994 hypothetical protein"
/codon_start=1
/transl_table=11
/product="signal-transduction protein"
/protein_id="YP_903472.1"
/db_xref="GI:118602257"
/db_xref="InterPro:IPR000644"
/db_xref="GeneID:4555368"
/translation="MTNNTTPILVKDVMWTQVDIVDSKCTVQNALNNMQHKKTKMLLV
DKSHEYDEYGVVLIADIASKVIAKDRALDRVNVYEIMNKPVISVRPDMDILYCARLLT
NFSLSRCPVLDNGKIIGVVGLTNIVFNGLRVV"
misc_feature complement(230155..230508)
/locus_tag="Rmag_0214"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:30863"
misc_feature complement(230149..230490)
/locus_tag="Rmag_0214"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair_17; cd04630"
/db_xref="CDD:73128"
gene complement(230535..230885)
/locus_tag="Rmag_0215"
/db_xref="GeneID:4555369"
CDS complement(230535..230885)
/locus_tag="Rmag_0215"
/note="KEGG: vpa:VP0813 putative nitrogen regulatory
protein P-II family protein"
/codon_start=1
/transl_table=11
/product="putative nitrogen regulatory protein P-II family
protein"
/protein_id="YP_903473.1"
/db_xref="GI:118602258"
/db_xref="GeneID:4555369"
/translation="MHFKLIIAFVDSDKTDKILEAARTKGATGSTIISQARGEGLKHN
KTFLGLNIETPRDVLLLLVEQHLSRGILETISDTGHFESSPQEGIAFQIDVEDAVGVM
HQIHALEHTIEKKI"
misc_feature complement(230583..230870)
/locus_tag="Rmag_0215"
/note="Nitrogen regulatory protein P-II; Region: P-II;
smart00938"
/db_xref="CDD:198006"
gene complement(230894..231634)
/locus_tag="Rmag_0216"
/db_xref="GeneID:4555370"
CDS complement(230894..231634)
/locus_tag="Rmag_0216"
/note="PFAM: protein of unknown function DUF1538;
KEGG: vpa:VP0812 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903474.1"
/db_xref="GI:118602259"
/db_xref="InterPro:IPR011435"
/db_xref="GeneID:4555370"
/translation="MSIVDNFISMFWNVAPIVMVLLGFQIIILKQKIPHLKKIIIGFI
LVWIGLTLFIVGLEKVLFPLGKLMANQLTSSNFIGSDALSWSDYYWVYIFAASIGFAT
TIAEPSLLSVAIKANQVSGGFIKVWPLRIAVAIGVAVGIAIGSFRIVTGLPLHYFIIA
GYIVVLIQTYFAPKNIIALAYDSGGVTTSTVTVPLVAALGLGLASTIDGRSTLIDGFG
LIAFASLFPIMSVMAYVQIIKFLKQDKK"
misc_feature complement(230921..231586)
/locus_tag="Rmag_0216"
/note="Protein of unknown function (DUF1538); Region:
DUF1538; pfam07556"
/db_xref="CDD:148909"
gene complement(231631..232362)
/locus_tag="Rmag_0217"
/db_xref="GeneID:4555371"
CDS complement(231631..232362)
/locus_tag="Rmag_0217"
/note="PFAM: protein of unknown function DUF1538;
KEGG: cps:CPS_1953 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903475.1"
/db_xref="GI:118602260"
/db_xref="InterPro:IPR011435"
/db_xref="GeneID:4555371"
/translation="MKKTVQQFISNLIDSVKDLAPIIGVITFFQIVVLQQSIPNLMDI
MIGTGFILLGLTLFVYGLKLGLFPIGEVLAYSFVKKGSIFWLLLFAFALGFGTTVTEP
ALIAVANEAAKVAHLGGIVNTQTELNSYAQTLRFTVAISVGLAVVIGVFRILKGWPIQ
YLIIGGYLLVIITTFFAPDFIIGIAYDSGGVTTSTITVPLLTALGVGLTSSISGRNPL
TDGFGMIAIASLLPIIAVMLFGILL"
misc_feature complement(231634..232299)
/locus_tag="Rmag_0217"
/note="Protein of unknown function (DUF1538); Region:
DUF1538; pfam07556"
/db_xref="CDD:148909"
gene 232489..233349
/locus_tag="Rmag_0218"
/db_xref="GeneID:4554894"
CDS 232489..233349
/locus_tag="Rmag_0218"
/EC_number="4.1.3.38"
/note="PFAM: aminotransferase, class IV;
KEGG: noc:Noc_1662 aminotransferase, class IV"
/codon_start=1
/transl_table=11
/product="aminodeoxychorismate lyase apoprotein"
/protein_id="YP_903476.1"
/db_xref="GI:118602261"
/db_xref="InterPro:IPR001544"
/db_xref="InterPro:IPR002114"
/db_xref="GeneID:4554894"
/translation="MNSTLLINGKKQTKLSVLNRLVQFGDGLFETCLIEDAKLLFWSK
HFSRLKKGYDKLKIYPVSETIWLKEIAKAFTISKLDQAVVKIIISRGESVRGYGYEKN
IKPTRIVIVSPVPDLPWQYHLEVCVSGYSGNQLLSEIKHCNRLEQVFARSELQTQECI
MLDENAQVISVTQGNIFAIRNQVIFTPSLTDCGIEGTRRSVVFDLVQVLGLKLEICSL
SLSELLEADEVFITNSMIGVKPVDKINQQLFNHHQITNQLISAFIRSKNNHLSSVLLK
SKSPYFCIFS"
misc_feature 232543..233274
/locus_tag="Rmag_0218"
/note="ADCL_like: 4-Amino-4-deoxychorismate lyase: is a
member of the fold-type IV of PLP dependent enzymes that
converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most...; Region:
ADCL_like; cd01559"
/db_xref="CDD:29570"
misc_feature order(232630..232632,232906..232908,232996..232998)
/locus_tag="Rmag_0218"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:29570"
misc_feature 232906..232908
/locus_tag="Rmag_0218"
/note="catalytic residue [active]"
/db_xref="CDD:29570"
gene 233425..233813
/locus_tag="Rmag_0219"
/pseudo
/db_xref="GeneID:4555478"
gene 233845..234462
/gene="tmk"
/locus_tag="Rmag_0220"
/db_xref="GeneID:4554895"
CDS 233845..234462
/gene="tmk"
/locus_tag="Rmag_0220"
/EC_number="2.7.4.9"
/note="catalyzes the reversible phosphoryl transfer from
adenosine triphosphate (ATP) to thymidine monophosphate
(dTMP) to form thymidine diphosphate (dTDP)"
/codon_start=1
/transl_table=11
/product="thymidylate kinase"
/protein_id="YP_903477.1"
/db_xref="GI:118602262"
/db_xref="InterPro:IPR000062"
/db_xref="GeneID:4554895"
/translation="MQRGKFITIDGVEGSGKSTQIDFICDYLVTKKINVILTREPGGT
ELGEKIRTLLLSTDIQSIHGDTELLLLFAARNEHIRTKIIPSLEKGDWVLSDRFTDAS
YAYQGGGRGLSIERITQLEKWVLQDFTPDVTLLLDVSVALGMSRVESRGRKDRIELET
NDFFKRVRNSYIERSKQFPKRIKLIDASKTLEQTAQQIKIILQVL"
misc_feature 233851..234453
/gene="tmk"
/locus_tag="Rmag_0220"
/note="thymidylate kinase; Validated; Region: tmk;
PRK00698"
/db_xref="CDD:179089"
misc_feature 233857..234453
/gene="tmk"
/locus_tag="Rmag_0220"
/note="Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor. TMPK
represents the rate-limiting step...; Region: TMPK;
cd01672"
/db_xref="CDD:30190"
misc_feature order(233896..233898,234055..234057,234067..234069,
234130..234135,234157..234159,234292..234294)
/gene="tmk"
/locus_tag="Rmag_0220"
/note="TMP-binding site; other site"
/db_xref="CDD:30190"
misc_feature order(233899..233901,234280..234282,234403..234405)
/gene="tmk"
/locus_tag="Rmag_0220"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30190"
gene 234459..235466
/locus_tag="Rmag_0221"
/db_xref="GeneID:4554896"
CDS 234459..235466
/locus_tag="Rmag_0221"
/EC_number="2.7.7.7"
/note="KEGG: cbu:CBU_0500 DNA polymerase III, delta prime
subunit; similar to ATPases involved in DNA replication"
/codon_start=1
/transl_table=11
/product="DNA polymerase III, delta prime subunit"
/protein_id="YP_903478.1"
/db_xref="GI:118602263"
/db_xref="InterPro:IPR000862"
/db_xref="GeneID:4554896"
/translation="MNFPWHANAWSKLQNMIDQDRMPHALLITGVEKIGKFELMQQIV
GVLLKDDVIIRKDNIREDLDYSVLIRHSNYPNMVYCRSGEMVEKSKNRSKNIRIEQVR
VFCDALNKTADQLQIGVIFYGDQMNMSAANGLLKTLEEPRKNTLIIILAHHVENLPDT
VVSRCQNIYIAPAYDQQTCQWLIEHIGKTQNADFDILQLLENTHGVPFKALSELSDGN
FIHYQHYQNQLLNIAINPLMVTQIKEFEGNELVVLNCLQNIVIEGIRLKTIHQEGGLI
ELNQVIKAVKFEFLFKLLDDIYHTIKLSKTTVNIKLLLDIILIIWSHITHLKQYPQII
Q"
misc_feature 234486..235088
/locus_tag="Rmag_0221"
/note="DNA polymerase III, delta' subunit; Region: holB;
TIGR00678"
/db_xref="CDD:211598"
gene 235504..236790
/locus_tag="Rmag_0222"
/db_xref="GeneID:4554897"
CDS 235504..236790
/locus_tag="Rmag_0222"
/EC_number="2.6.1.-"
/note="Converts (S)-4-amino-5-oxopentanoate to
5-aminolevulinate during the porphyrin biosynthesis
pathway"
/codon_start=1
/transl_table=11
/product="glutamate-1-semialdehyde aminotransferase"
/protein_id="YP_903479.1"
/db_xref="GI:118602264"
/db_xref="InterPro:IPR004639"
/db_xref="InterPro:IPR005814"
/db_xref="GeneID:4554897"
/translation="MNQSETLFAQAKTVIPGGVNSPVRAFNGVGGSPIFFTRGEGAYL
FDEDDKKYIDYVASWGSMILGHTNQAVIIAVKTTLENGLGFGAPTQIETKLAEKVCEL
MPSIELVRMVSSGTEATMSAIRLARGHTGRDKIIKFEGCYHGHSDSLLIKAGSGALTL
GVPTSPGVPKDFAKHTLTLEYNNIDQVCEVLSEVGAEVACIIVEPVAGNMNCIPPIDG
FLQVLRELCDEYGVILVFDEVMTGFRVALGGAQAFYNVKPDLTTLGKVIGGGLPVGAF
GGKREIMQSIAPLGPVYQAGTLSGNPISMSAGLVMLNVLSKDENFYTILNTKVQKLTK
GILAKAKENNIGMTANVVGGMFGLFFTDSQSVTNFKETSQCNIELFKKFFHLMLAEGV
YMAPSAYEAGFVSSAHSDTDIQNTIDAAGRAFIKLT"
misc_feature 235504..236784
/locus_tag="Rmag_0222"
/note="glutamate-1-semialdehyde aminotransferase;
Provisional; Region: PRK00062"
/db_xref="CDD:178834"
misc_feature 235522..236775
/locus_tag="Rmag_0222"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(235843..235851,235927..235932,235936..235938,
236113..236115,236212..236214,236218..236223,
236296..236298)
/locus_tag="Rmag_0222"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(235846..235851,235927..235932,236113..236115,
236212..236214,236221..236223,236296..236298)
/locus_tag="Rmag_0222"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 236296..236298
/locus_tag="Rmag_0222"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 237349..238002
/locus_tag="Rmag_0223"
/db_xref="GeneID:4554898"
CDS 237349..238002
/locus_tag="Rmag_0223"
/note="TIGRFAM: HAD-superfamily hydrolase, subfamily IB
(PSPase-like); HAD-superfamily subfamily IB hydrolase,
TIGR01490;
KEGG: tcx:Tcr_0999 HAD-superfamily subfamily IB,
PSPase-like"
/codon_start=1
/transl_table=11
/product="HAD family hydrolase"
/protein_id="YP_903480.1"
/db_xref="GI:118602265"
/db_xref="InterPro:IPR006383"
/db_xref="InterPro:IPR006385"
/db_xref="GeneID:4554898"
/translation="MALAIFDLDKTLIKGDSDFLWGEFLSEIGAVDAGTYQSKNQYFI
DQYVLGKLDINEYLEFCLMPLSQHSIQILNQWHQQFMSQKIEQILLPKAQVVVDAHKT
KGDIVIVITATNRFVAEPIVARYGIEHLLATNPEIKEGQYTGKIEGEPCFQSGKINHL
NKWLKETGENIKGASFYSDSHNDLPMLELVDYPIVVHGDDKLNTFAIERDWQCLDWM"
misc_feature 237349..237981
/locus_tag="Rmag_0223"
/note="Phosphoserine phosphatase [Amino acid transport and
metabolism]; Region: SerB; COG0560"
/db_xref="CDD:30906"
misc_feature 237355..237954
/locus_tag="Rmag_0223"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
gene complement(238031..238546)
/locus_tag="Rmag_0224"
/db_xref="GeneID:4554899"
CDS complement(238031..238546)
/locus_tag="Rmag_0224"
/note="KEGG: tbd:Tbd_0575 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903481.1"
/db_xref="GI:118602266"
/db_xref="GeneID:4554899"
/translation="MSDNKKMTIIATKGTFDWAFPPFIIASTGVAMDKEVTIFFTFYG
LNLLLKDTSKLRVSPLGNPGMPMKLPFGPEWLQKINFGPKIPNIFWSLPFTEYLATFL
MKKTMKKNGVATLDELRSMCQEFDVKFIACEMTVGLFGYSKDDFIDGIEFAGAATYFN
ECDGSNHNLYM"
misc_feature complement(238037..238540)
/locus_tag="Rmag_0224"
/note="DsrE/DsrF/DrsH-like family; Region: DrsE_2;
pfam13686"
/db_xref="CDD:205862"
gene complement(238575..238799)
/locus_tag="Rmag_0225"
/db_xref="GeneID:4554900"
CDS complement(238575..238799)
/locus_tag="Rmag_0225"
/note="PFAM: SirA family protein;
KEGG: mag:amb0858 predicted redox protein"
/codon_start=1
/transl_table=11
/product="SirA family protein"
/protein_id="YP_903482.1"
/db_xref="GI:118602267"
/db_xref="InterPro:IPR001455"
/db_xref="GeneID:4554900"
/translation="MADETLDASGLNCPLPILKTKKALSKMDAGKILNVISTDVGSVK
DIEAFCNQTGNKLISTIEESGKYIFNIEKA"
misc_feature complement(238581..238787)
/locus_tag="Rmag_0225"
/note="SirA, YedF, and YeeD. Two-layered alpha/beta
sandwich domain. SirA (also known as UvrY, and YhhP)
belongs to a family of bacterial two-component response
regulators that controls secondary metabolism and
virulence. The other member of this...; Region:
SirA_YedF_YeeD; cd00291"
/db_xref="CDD:48205"
misc_feature complement(order(238746..238748,238752..238763,
238770..238772,238779..238784))
/locus_tag="Rmag_0225"
/note="CPxP motif; other site"
/db_xref="CDD:48205"
gene 238966..239995
/locus_tag="Rmag_0226"
/pseudo
/db_xref="GeneID:4555479"
gene complement(240174..240845)
/locus_tag="Rmag_0227"
/db_xref="GeneID:4554901"
CDS complement(240174..240845)
/locus_tag="Rmag_0227"
/EC_number="5.3.1.6"
/note="Catalyzes D-ribose 5-phosphate --> D-ribulose
5-phosphate in the nonoxidative branch of the pentose
phosphate pathway"
/codon_start=1
/transl_table=11
/product="ribose-5-phosphate isomerase A"
/protein_id="YP_903483.1"
/db_xref="GI:118602268"
/db_xref="InterPro:IPR004788"
/db_xref="GeneID:4554901"
/translation="MTQDEMKFAVAQAALKHVVKDTIIGVGTGSTTNFFIDALAKIKN
EIKGAIASSKATRQRLESYDIKVFDLNEVETISVYIDGADESDDGLNLIKGGGGALMR
EKIVAAVANQFICIADESKLVTIMGDFPLPVEVIPMASNYVKYQISQRIGGTPTVREN
FITDNGNLILDIKDLKITNPKVMETKLNSITGVVANGLFANRGADILLLGTSNGVKIV
TRLIG"
misc_feature complement(240213..240830)
/locus_tag="Rmag_0227"
/note="RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first step
of the non-oxidative branch of the pentose phosphate
pathway. This reaction leads to the...; Region: RPI_A;
cd01398"
/db_xref="CDD:73164"
misc_feature complement(order(240342..240344,240354..240356,
240360..240362,240369..240374,240555..240560,
240639..240641,240645..240647,240672..240677,
240684..240686,240762..240764))
/locus_tag="Rmag_0227"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:73164"
misc_feature complement(order(240483..240485,240537..240539,
240555..240566,240594..240596,240600..240605,
240753..240758,240762..240764))
/locus_tag="Rmag_0227"
/note="active site"
/db_xref="CDD:73164"
misc_feature complement(order(240264..240266,240279..240284,
240411..240413,240420..240428,240432..240437,
240519..240521,240540..240542,240624..240626,
240636..240638))
/locus_tag="Rmag_0227"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73164"
gene 240887..241492
/locus_tag="Rmag_0228"
/db_xref="GeneID:4554902"
CDS 240887..241492
/locus_tag="Rmag_0228"
/note="TIGRFAM: non-canonical purine NTP pyrophosphatase,
rdgB/HAM1 family;
PFAM: Ham1 family protein;
KEGG: vpa:VP2621 Ham1 protein"
/codon_start=1
/transl_table=11
/product="RdgB/HAM1 family non-canonical purine NTP
pyrophosphatase"
/protein_id="YP_903484.1"
/db_xref="GI:118602269"
/db_xref="InterPro:IPR002637"
/db_xref="GeneID:4554902"
/translation="MQKIILASNNQGKIKEFNIMLSGIYEVVSMQDMQVEEVPEIGLT
FVENALIKARNASMISGLPALADDSGIVVDALGGRPGIYSARYANHHGDDKANTQKLL
NEMATVPEGARSARFWCAVVFVGHENDPTPIIIQRGWEGEILREKMGDNGFGYDPIFY
LPTHNCTSAELSSIEKNKISHRSRALSALLKILKTNQWTMR"
misc_feature 240896..241459
/locus_tag="Rmag_0228"
/note="NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against mutagenesis
by the base analog 6-N-hydroxylaminopurine (HAP) in E.
Coli and S. cerevisiae. A...; Region: HAM1; cd00515"
/db_xref="CDD:29953"
misc_feature order(240914..240916,240920..240925,240932..240934,
241091..241099,241136..241141,241235..241237,
241343..241345,241349..241354,241427..241432)
/locus_tag="Rmag_0228"
/note="active site"
/db_xref="CDD:29953"
misc_feature order(241004..241012,241112..241117,241124..241126,
241133..241135,241142..241144)
/locus_tag="Rmag_0228"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29953"
gene 241529..242604
/locus_tag="Rmag_0229"
/pseudo
/db_xref="GeneID:4555480"
gene 243517..243804
/locus_tag="Rmag_0230"
/pseudo
/db_xref="GeneID:4555481"
gene 243885..244151
/locus_tag="Rmag_0231"
/pseudo
/db_xref="GeneID:4555482"
gene 244285..245175
/locus_tag="Rmag_0232"
/db_xref="GeneID:4554903"
CDS 244285..245175
/locus_tag="Rmag_0232"
/EC_number="2.7.2.8"
/note="catalyzes the phosphorylation of
N-acetyl-L-glutamate to form N-acetyl-L-glutamate
5-phosphate"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_903485.1"
/db_xref="GI:118602270"
/db_xref="InterPro:IPR000169"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001057"
/db_xref="InterPro:IPR004662"
/db_xref="GeneID:4554903"
/translation="MLNNMSNNTNNITSVLTESLPYIKKFQGKTIVIKYGGNAMVDEA
LKSSFARDIVLMKLVGMNPIVVHGGGPQIGKTLKKIGKQSQFIDGMRVTDSETMDVVE
MVLGGLVNKEIVNLIHQHGGHSIGLTGKDGSLISAKKLKHDIEPTSEIIDLGHVGEVD
KIDISVINLLLKGDFIPVIAPIGVGKDGFSYNINADLVASAIAQALNAEKLILLTNAS
GLLDANGELLTRLDDNIIDGLIKDGTIHSGMLPKINCALSAVKNGVKSTHIIDGRVAH
AVLLEVFTNSGVGTLITCNE"
misc_feature 244327..245160
/locus_tag="Rmag_0232"
/note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic
(NAGK-C) catalyzes the phosphorylation of the gamma-COOH
group of N-acetyl-L-glutamate (NAG) by ATP in the second
step of arginine biosynthesis found in some bacteria and
photosynthetic organisms using the...; Region: AAK_NAGK-C;
cd04250"
/db_xref="CDD:58616"
misc_feature 244327..244356
/locus_tag="Rmag_0232"
/note="feedback inhibition sensing region; other site"
/db_xref="CDD:58616"
misc_feature order(244330..244338,244342..244344,244351..244356,
244435..244437,244447..244449,244459..244461,
244519..244524,244579..244581,244588..244593,
244606..244608,244615..244617,244627..244629,
244648..244650,244654..244662,244666..244668,
244672..244683,244780..244782,244807..244809,
245110..245112,245119..245124,245134..245136)
/locus_tag="Rmag_0232"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58616"
misc_feature order(244384..244386,244393..244398,244864..244866,
244927..244935,244945..244947,245014..245016,
245020..245022,245026..245031,245038..245040)
/locus_tag="Rmag_0232"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58616"
misc_feature order(244486..244491,244552..244557,244858..244860,
244864..244869)
/locus_tag="Rmag_0232"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58616"
gene 245168..246016
/locus_tag="Rmag_0233"
/db_xref="GeneID:4554904"
CDS 245168..246016
/locus_tag="Rmag_0233"
/EC_number="1.3.3.1"
/note="PFAM: oxidoreductase FAD/NAD(P)-binding domain
protein; Oxidoreductase FAD-binding domain protein;
KEGG: noc:Noc_0363 dihydroorotate dehydrogenase electron
transfer subunit"
/codon_start=1
/transl_table=11
/product="dihydroorotate oxidase B, electron transfer
subunit"
/protein_id="YP_903486.1"
/db_xref="GI:118602271"
/db_xref="InterPro:IPR001221"
/db_xref="InterPro:IPR001433"
/db_xref="InterPro:IPR006058"
/db_xref="InterPro:IPR008333"
/db_xref="GeneID:4554904"
/translation="MNKASIKIHDCQILAHYQFEGKQYILTLASNIIAKQTKPGQFVH
LTVSSALAMRRPISIMSVDIENGTFDLLYKVVGEGTRQLSQRKVGDILSIIGPIGNGF
KLTDKKRPLLIGGGAGMPPMIAIAQQIKDLGYESFAILGSEVPFPFVDKLADNNKDYQ
GATYTMPELEDWGIECRLTSLQGFDGTFKGFVTDLAKIYLDNLKTDERMQVEIYACGP
RLMLVAVANLAKEYNLPCQISLEENMACAVGGCAGCVVEIQTNQGISMKRVCVDGPVF
DAYQIF"
misc_feature 245195..246007
/locus_tag="Rmag_0233"
/note="2-polyprenylphenol hydroxylase and related
flavodoxin oxidoreductases [Coenzyme metabolism / Energy
production and conversion]; Region: UbiB; COG0543"
/db_xref="CDD:30889"
misc_feature 245204..245998
/locus_tag="Rmag_0233"
/note="FAD/NAD binding domain in the electron transfer
subunit of dihydroorotate dehydrogenase. Dihydroorotate
dehydrogenases (DHODs) catalyze the only redox reaction in
pyrimidine de novo biosynthesis. They catalyze the
oxidation of (S)-dihydroorotate to...; Region:
DHOD_e_trans; cd06218"
/db_xref="CDD:99814"
misc_feature order(245324..245326,245330..245341,245381..245389,
245405..245413,245516..245518,245891..245896)
/locus_tag="Rmag_0233"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature order(245330..245332,245336..245341)
/locus_tag="Rmag_0233"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature order(245402..245404,245411..245413,245420..245422,
245432..245434,245456..245458,245462..245464)
/locus_tag="Rmag_0233"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99814"
misc_feature order(245501..245503,245513..245524,245528..245530)
/locus_tag="Rmag_0233"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99814"
misc_feature order(245516..245521,245588..245596,245816..245821)
/locus_tag="Rmag_0233"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature order(245903..245905,245918..245920,245927..245929,
245975..245977)
/locus_tag="Rmag_0233"
/note="Iron coordination center [ion binding]; other site"
/db_xref="CDD:99814"
gene 246013..246651
/locus_tag="Rmag_0234"
/db_xref="GeneID:4554905"
CDS 246013..246651
/locus_tag="Rmag_0234"
/note="TIGRFAM: Protein of unknown function UPF0001;
PFAM: alanine racemase domain protein;
KEGG: eca:ECA3627 putative alanine racemase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903487.1"
/db_xref="GI:118602272"
/db_xref="InterPro:IPR001608"
/db_xref="InterPro:IPR011078"
/db_xref="GeneID:4554905"
/translation="MIKDNLEKIQERINQVNHTQFVTLIAVSKTRSVDELQQAINTGQ
KHFAENYLQEALIKINHLKGQNLIWHFIGPIQSNKTLKIAKNFDWVHSVDRLKIAKRL
NEQRPKNLPNLKVLLQINIDNEPIKSGASIEQIDELVTHFESLKNLTLRGFMCIPNPS
NSAQNFTRMTSIIKQYPNLDALSMGMSRDLESAITNGATFLRIGTDIFGKRA"
misc_feature 246013..246642
/locus_tag="Rmag_0234"
/note="Pyridoxal 5-phosphate (PLP)-binding TIM barrel
domain of Type III PLP-Dependent Enzymes, Yggs-like
proteins; Region: PLPDE_III_Yggs_like; cd06824"
/db_xref="CDD:143497"
misc_feature order(246091..246093,246097..246099,246160..246162,
246226..246228,246478..246480,246568..246570,
246616..246618,246622..246627)
/locus_tag="Rmag_0234"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143497"
misc_feature 246097..246099
/locus_tag="Rmag_0234"
/note="catalytic residue [active]"
/db_xref="CDD:143497"
gene 248041..250506
/locus_tag="Rmag_0235"
/db_xref="GeneID:4554906"
CDS 248041..250506
/locus_tag="Rmag_0235"
/note="KEGG: lpp:lpp1719 hypothetical protein"
/codon_start=1
/transl_table=11
/product="membrane protein-like"
/protein_id="YP_903488.1"
/db_xref="GI:118602273"
/db_xref="GeneID:4554906"
/translation="MIKKKRLSGIKVLKISTWVSVIFTFIFVLVVLFFVIFPMLLKVP
IETQLSSLTGLDVQLSKITFDFEKKGITLKVHDISIASGEAQQMAMIKNLSWHINLLS
LFDDIYHSSQIFIDTLVLYSNLDDFSIDDIRNIASLGMLKELYFFESLHINKTIIKDT
VEIASLTLKRDGMQLLLTIPNQSIGTKHLDITIILSSAKINQNGFLTLPITLSGDDFE
LLSSLKIYSYQGYDFIQFSGLIQRMNVINISDYLPMVLIGDINHQWIKHAFQSGELDN
INISIKKNLSTQLPAKIKFDAHLSNTELLFNTDWQSLKQLDANIAIDGRKITVMVNHT
MLNDMFLQGMKVQILDMSKDKLEISVVGKINTQSEILTQFLKDAPLNDNVNDVLGKFS
LSGKVVGNVDLIISLDETEPILDINLSIQDNRMTTLGGAIVVKNYDAQLTLHNNKITS
KGVGNIRGESFNIRINSNNQDSGLDALFKVGLTNGNNFEFYLTKYLDQTWQANVKSDT
LKTDVKIILNENALPEVKLINLQVEALDKIKGNWDIQAKDFPSMHLSVQNIQVGESKW
PDFEATLGSQDKVLKIINLEFLGIGVNSQNLSFDGAWVDGRTILTAKAKGSKLSKFLD
KLNIKEKVRGGQFEFDIRLFCNCAPWNMSFKGASGLIKMKVKEGVFTNKDPNISRVLS
LLNIKSIAKRLELDITDLVSEGFVYDTIDAQVSINNSMATISHFKLDSSSSTINLTGS
SNIVKQTYHLEAKVLPAISDAVPITTYLAGGGLSGMVVWLVDKILFKGKLINNIVDKV
VEFKYKITGPWNKPIIENISTVL"
misc_feature 248767..249597
/locus_tag="Rmag_0235"
/note="Protein of unknown function; Region: DUF3971;
pfam13116"
/db_xref="CDD:205297"
misc_feature 249742..250476
/locus_tag="Rmag_0235"
/note="AsmA-like C-terminal region; Region: AsmA_2;
pfam13502"
/db_xref="CDD:205680"
gene 250503..251927
/locus_tag="Rmag_0236"
/db_xref="GeneID:4554907"
CDS 250503..251927
/locus_tag="Rmag_0236"
/note="PFAM: peptidase U62, modulator of DNA gyrase;
KEGG: plu:plu4064 tldD protein, suppresses the inhibitory
activity of the carbon storage regulator (CSRA)"
/codon_start=1
/transl_table=11
/product="peptidase U62, modulator of DNA gyrase"
/protein_id="YP_903489.1"
/db_xref="GI:118602274"
/db_xref="InterPro:IPR002510"
/db_xref="GeneID:4554907"
/translation="MIEQLLDDHRLNQEKITILLSSLAAKGTDYADLYFQHSAVESWF
LEESIVKSGTYHISHGVGARAVSSDQTGFAYSDDLNIKAIEKAISFAKGISTQTGTRR
IQAFQSIPQVARYNGSNPLSSFSSQEKVNFLKRIDILGRKEPKVKQVSALISGGFSEV
LIASTDGVFAKDYRPMVRVSVSIIVEHNGRTESASSGGGGRYNYRYFIDHALDEIYVN
EAIRQALVALESKKAPAGNMPVILGPGWPGVLLHEAIGHGLEGDFNRKKSSIFTNRIG
EQVASDKCTIVDNGTLENRRGSLTIDDEGIPTQNTLLIENGILKGYLFDKMNAKLMNT
VSTGNGRRESYAHIPIPRMTNTYMLNGQDSLKNMITSVDNGIYAVNFDGGQVNITSGK
FVFSANEAYLIKNGKIMHPIKGVTLVGSGAEVLKKISMVANDLKLDNGVGVCGKDGQN
VPVGVGQPSLKIDQLTVGGTEVNA"
misc_feature 250509..251912
/locus_tag="Rmag_0236"
/note="Predicted Zn-dependent proteases and their
inactivated homologs [General function prediction only];
Region: TldD; cl00398"
/db_xref="CDD:193802"
misc_feature 250587..251468
/locus_tag="Rmag_0236"
/note="Putative modulator of DNA gyrase; Region:
PmbA_TldD; pfam01523"
/db_xref="CDD:190021"
gene 252028..252384
/locus_tag="Rmag_0237"
/db_xref="GeneID:4554908"
CDS 252028..252384
/locus_tag="Rmag_0237"
/note="PFAM: NADH-ubiquinone/plastoquinone oxidoreductase,
chain 3;
KEGG: tcx:Tcr_0817 NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3"
/codon_start=1
/transl_table=11
/product="NADH-ubiquinone/plastoquinone oxidoreductase,
chain 3"
/protein_id="YP_903490.1"
/db_xref="GI:118602275"
/db_xref="InterPro:IPR000440"
/db_xref="GeneID:4554908"
/translation="MLESYIPVIVFIFLGLAFGVGPMLIGYLLGPSKPYEEKNTQFEC
GFPAFDDSRMYFNVRYYLVAILFILFDLEVAFVFPWAVVQSQLGWFGFIAISIFLFLL
AVGFIFEWKNGALEWE"
misc_feature 252028..252381
/locus_tag="Rmag_0237"
/note="NADH:ubiquinone oxidoreductase subunit A;
Validated; Region: PRK06602"
/db_xref="CDD:180638"
gene 252388..252867
/locus_tag="Rmag_0238"
/db_xref="GeneID:4554909"
CDS 252388..252867
/locus_tag="Rmag_0238"
/EC_number="1.6.99.3"
/note="The point of entry for the majority of electrons
that traverse the respiratory chain eventually resulting
in the reduction of oxygen"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit B"
/protein_id="YP_903491.1"
/db_xref="GI:118602276"
/db_xref="InterPro:IPR006137"
/db_xref="InterPro:IPR006138"
/db_xref="GeneID:4554909"
/translation="MAIEGLMKQGFVTTSLNNVINWARTGSLWPMTFGLACCAVEMME
AGSSRYDLDRFGIVFRPTPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSC
ANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQDKIRSTNTIART"
misc_feature 252388..252840
/locus_tag="Rmag_0238"
/note="NADH dehydrogenase subunit B; Validated; Region:
PRK06411"
/db_xref="CDD:180557"
misc_feature 252415..252846
/locus_tag="Rmag_0238"
/note="NADH-quinone oxidoreductase, B subunit; Region:
nuoB_fam; TIGR01957"
/db_xref="CDD:162625"
gene 252867..253481
/locus_tag="Rmag_0239"
/db_xref="GeneID:4554910"
CDS 252867..253481
/locus_tag="Rmag_0239"
/EC_number="1.6.5.3"
/note="KEGG: lpn:lpg2787 NADH dehydrogenase I, C subunit;
TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C;
PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit"
/codon_start=1
/transl_table=11
/product="NADH (or F420H2) dehydrogenase, subunit C"
/protein_id="YP_903492.1"
/db_xref="GI:118602277"
/db_xref="InterPro:IPR001268"
/db_xref="InterPro:IPR010218"
/db_xref="GeneID:4554910"
/translation="MQDLKASLIKVFGERHLVEAFGELTLIVDSQDIIKTCLKLRDFF
YFDTLIDLCGVDYLTYGQSDWNGNASASGFSRGRNHQGSKDRHEQRFVVVYHLLSVSK
NKRIRVKSFVDEAEPIIKSVTDIWASADWYEREAFDLMGILFENHTDLRRILTDYGFK
GHPLRKDFPMIGEVEMRYDEDLGRVVYEKVSIEPNINVPRVIRK"
misc_feature 252870..253475
/locus_tag="Rmag_0239"
/note="NADH dehydrogenase subunit C; Provisional; Region:
PRK06074"
/db_xref="CDD:180384"
misc_feature 252936..253382
/locus_tag="Rmag_0239"
/note="Respiratory-chain NADH dehydrogenase, 30 Kd
subunit; Region: Complex1_30kDa; cl16917"
/db_xref="CDD:211513"
gene 253483..254736
/locus_tag="Rmag_0240"
/db_xref="GeneID:4554911"
CDS 253483..254736
/locus_tag="Rmag_0240"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit D"
/protein_id="YP_903493.1"
/db_xref="GI:118602278"
/db_xref="InterPro:IPR001135"
/db_xref="InterPro:IPR010219"
/db_xref="GeneID:4554911"
/translation="MAEIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLH
RGTEKLVESKPYNQSIGYMDRLDYVSMMCNEHAYIMAIETMLGIKVPERAQYIRVMFD
EITRILNHLMWLGTHGLDVGAMSIFLYAFREREKLIDCYEAVSGSRMHATYYRPGGVY
RDLPDKMPQYLASGFRTDKELKTMNENRQGSLLDFIADFVKEFPKSIKQYDDLLTDNR
IWKQRLVNIGIVSANRAKQLGFTGPMLRGSGVAWDLRKNQPYAVYDQLEFDIPVGVTG
DSYDRYLVRMEEMRQSNHIIKQCVKWLQGNPGAVMSDDHKVSPPKRTDMKGDMESLIH
HFKLFTEGYCLSEGEIYRAVEHPKGEFGIYLISDGANKPYRVKIRAPGFAHLAAMNEM
ARGHMLSDVVTIIGTQDIVFGEIDR"
misc_feature 253483..254733
/locus_tag="Rmag_0240"
/note="NADH dehydrogenase subunit D; Validated; Region:
PRK06075"
/db_xref="CDD:180385"
misc_feature 253840..254733
/locus_tag="Rmag_0240"
/note="Respiratory-chain NADH dehydrogenase, 49 Kd
subunit; Region: Complex1_49kDa; pfam00346"
/db_xref="CDD:144077"
gene 254733..255206
/locus_tag="Rmag_0241"
/db_xref="GeneID:4554912"
CDS 254733..255206
/locus_tag="Rmag_0241"
/EC_number="1.6.5.3"
/note="KEGG: tcx:Tcr_0821 NADH-quinone oxidoreductase, E
subunit;
TIGRFAM: NADH-quinone oxidoreductase, E subunit;
PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit"
/codon_start=1
/transl_table=11
/product="NADH-quinone oxidoreductase, E subunit"
/protein_id="YP_903494.1"
/db_xref="GI:118602279"
/db_xref="InterPro:IPR002023"
/db_xref="GeneID:4554912"
/translation="MISIGAKKQIDAWIAKYPKDRKSSAVMQTLKIIQAENENKLSAD
TIQAVADYLDMPDIAVQEVATFYENYNHKKVGKYVIRFCHNISCMLNGADDLIAYLEN
KLGVQTDEVTPDGLISVKKVECLGACVGAPMFQINDEYFENLTFDKIDKIVDNLK"
misc_feature 254760..255203
/locus_tag="Rmag_0241"
/note="Respiratory-chain NADH dehydrogenase 24 Kd subunit;
Region: Complex1_24kDa; pfam01257"
/db_xref="CDD:144740"
misc_feature 254961..255200
/locus_tag="Rmag_0241"
/note="TRX-like [2Fe-2S] Ferredoxin (Fd) family,
NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily;
Nuo, also called respiratory chain Complex 1, is the entry
point for electrons into the respiratory chains of
bacteria and the mitochondria of eukaryotes; Region:
TRX_Fd_NuoE; cd03064"
/db_xref="CDD:48613"
misc_feature order(254967..254969,254973..254975,255093..255101)
/locus_tag="Rmag_0241"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:48613"
misc_feature order(254979..254981,254994..254996,255102..255104,
255114..255116)
/locus_tag="Rmag_0241"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:48613"
gene 255203..256471
/locus_tag="Rmag_0242"
/db_xref="GeneID:4554913"
CDS 255203..256471
/locus_tag="Rmag_0242"
/EC_number="1.6.99.5"
/note="KEGG: lpp:lpp2831 NADH dehydrogenase I chain F;
TIGRFAM: NADH-quinone oxidoreductase, F subunit;
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit"
/codon_start=1
/transl_table=11
/product="NADH-quinone oxidoreductase, F subunit"
/protein_id="YP_903495.1"
/db_xref="GI:118602280"
/db_xref="InterPro:IPR001949"
/db_xref="InterPro:IPR011537"
/db_xref="InterPro:IPR011538"
/db_xref="GeneID:4554913"
/translation="MNEVCFKSLIKDQCWSLKTYEANGGYSVWCKILKGELTPEYIID
ELKTSGLRGRGGAGFPTGLKWSFMPRHSDGQKYVICNSDEGEPGTCKDRDILRFNPHA
VIEGMAIGGFVMNASVGYNYIRGEFMEPFYRFEDALKEAYKVGLLGRNINNSSVNFDL
YTHLGAGAYICGEETALLESIEGKKGQPRFKPPFPANVGLFGKPTMINNTESFASVPE
ILRCGGQWFADIGVENSGGCKLFSVSGHVKNPANFEVPMGTPFKDLLKMAGGMRDGAR
LKAVIPGGSSTPVLTAKVAMNMTMDYDGIEKAGSMLGAGSVIIMDESTCMVEVLTRLT
HFYYDESCGQCTPCREGTGWLYRVLKRIIDGNGEQTDIDLLLGVQDKIIGNTICALGD
AAAMPVESFLRNFRLEFKYYIEHGKSMVKG"
misc_feature 255212..256441
/locus_tag="Rmag_0242"
/note="NADH-quinone oxidoreductase, F subunit; Region:
nuoF_fam; TIGR01959"
/db_xref="CDD:131014"
misc_feature 255920..256072
/locus_tag="Rmag_0242"
/note="SLBB domain; Region: SLBB; pfam10531"
/db_xref="CDD:204505"
misc_feature 256181..256318
/locus_tag="Rmag_0242"
/note="NADH-ubiquinone oxidoreductase-F iron-sulfur
binding region; Region: NADH_4Fe-4S; smart00928"
/db_xref="CDD:197996"
gene 256476..258737
/locus_tag="Rmag_0243"
/db_xref="GeneID:4555645"
CDS 256476..258737
/locus_tag="Rmag_0243"
/note="TIGRFAM: NADH-quinone oxidoreductase, chain G;
PFAM: ferredoxin; molybdopterin oxidoreductase;
KEGG: tcx:Tcr_0823 NADH-quinone oxidoreductase, chain G"
/codon_start=1
/transl_table=11
/product="NADH-quinone oxidoreductase, chain G"
/protein_id="YP_903496.1"
/db_xref="GI:118602281"
/db_xref="InterPro:IPR000283"
/db_xref="InterPro:IPR000585"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR006656"
/db_xref="InterPro:IPR010228"
/db_xref="GeneID:4555645"
/translation="MADIEIEIDGKIISAKAGEMLIKVTDREGVSVPRFCYHKKLSVV
ASCRMCLIDVEGAPKPQPACSTPVNEGMKVHTQNDKAKVSQKAVMEFLLINHPLDCPI
CDQGGECELQDVAVEYGSDVSRFSEDKRIVSDSDIGALIQTDMTRCIHCTRCVRFGLE
IAGIMEMGGTGRGEHLKIEPFLREGIQSELSGNMIDVCPVGALTSKPFRYELRSWQMH
SIPSIARHDLVGSNLFVQTYKDKVKRVVSADNDWVNETWISDRDRFSYEGLTHENRLL
EPQIKVQGQWKQVSWKVALDYAIKGLNSHVLKHKKVNQLGGLVSNTATMEELYLLKKI
LTEVGCDNIDHRLNVKNLDNTITLDSNIKLDALEKIDYALIVGANIRLEQPMINHRLR
KATKKGADIDTLNVMAFDFNYSLNTENIIAPNKIAFTLAGVLKSVITSNTQELPDYLV
AVEIDEVANKIASKLLNSSSSVIILGEHIINNEDASVIANLVTKIAKNTNSKTLNLSI
TANTIAANLVGFVPQNSGMNVNTMFTSDMLGFILLDIYPQYDFHDLDTAIKTFMPDNT
FVISLNSFKDDIVTGYSDVIFPIASIYETSGTQLNINNDMKSYTAAVKAPNEVKPAWK
VLKVMADLLELPGFHYADSTQIRAEISHQPHAKYVHDECINLTSKHNGISTIWQSSPY
SIDAVLRHSRALQKTKIGQMNNACINPVSAEILGLSADDKYLGVPVVITSTVADDCVF
INANQPTNIQEQE"
misc_feature 256485..258704
/locus_tag="Rmag_0243"
/note="NADH dehydrogenase subunit G; Validated; Region:
PRK09129"
/db_xref="CDD:181664"
misc_feature 256485..256700
/locus_tag="Rmag_0243"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature order(256569..256574,256581..256583,256590..256592,
256614..256625,256662..256667)
/locus_tag="Rmag_0243"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature order(256581..256583,256614..256616,256623..256625,
256665..256667)
/locus_tag="Rmag_0243"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
misc_feature 256728..256850
/locus_tag="Rmag_0243"
/note="NADH-ubiquinone oxidoreductase-G iron-sulfur
binding region; Region: NADH-G_4Fe-4S_3; pfam10588"
/db_xref="CDD:204520"
misc_feature 257136..258374
/locus_tag="Rmag_0243"
/note="Molybdopterin-Binding (MopB) domain of the MopB
superfamily of proteins, a large, diverse, heterogeneous
superfamily of enzymes that, in general, bind
molybdopterin as a cofactor. The MopB domain is found in a
wide variety of molybdenum- and...; Region:
Molybdopterin-Binding; cl09928"
/db_xref="CDD:209095"
misc_feature order(257256..257258,257514..257516,257520..257528,
257601..257606,257610..257612,257619..257624,
257685..257693,257754..257756,257994..257996,
258108..258116,258186..258194,258204..258206,
258240..258245,258258..258260)
/locus_tag="Rmag_0243"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:73198"
gene 258737..259810
/locus_tag="Rmag_0244"
/db_xref="GeneID:4555646"
CDS 258737..259810
/locus_tag="Rmag_0244"
/note="PFAM: respiratory-chain NADH dehydrogenase, subunit
1;
KEGG: tcx:Tcr_0824 respiratory-chain NADH dehydrogenase,
subunit 1"
/codon_start=1
/transl_table=11
/product="respiratory-chain NADH dehydrogenase, subunit 1"
/protein_id="YP_903497.1"
/db_xref="GI:118602282"
/db_xref="InterPro:IPR001694"
/db_xref="GeneID:4555646"
/translation="MELWQAFVQMVYTLTPWFDGTIASILIILIKAITLVIPLMLVVA
YFTYAERKVIGYMQLRIGPNRVGPKGWLQPIADALKLMTKEIIFPTKANIYLFLLAPV
LAIAPAIAVWVVIPFDEDIYITNLDISLLYVLAIGSIGVYGIILAGWASNSKYPLLGA
LRSASLLVSYEIVIGFALATVVMIAGSVNLNTIVQAQQGGIIYWNFIPLFPMMIIFFI
SALIETNRAPFDVVEGESEIVGGTHVEYSGMTFAVFFLAEYANMILMAVLAVVMFFGG
WHSPFEAIPYLESAFSWVPGIIWLLAKTTFFMFLYLWVRATFPRFRYDQIMRLSWKVF
LPITIIWIFVVALMTQLKLEPWF"
misc_feature 258848..259780
/locus_tag="Rmag_0244"
/note="NADH:ubiquinone oxidoreductase subunit H;
Provisional; Region: PRK06076"
/db_xref="CDD:180386"
gene 259824..260315
/locus_tag="Rmag_0245"
/db_xref="GeneID:4555647"
CDS 259824..260315
/locus_tag="Rmag_0245"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit I"
/protein_id="YP_903498.1"
/db_xref="GI:118602283"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR010226"
/db_xref="GeneID:4555647"
/translation="MIKKLSKLVKDFTLSELRTGMKITAKELVNKKITVQFPEERTPI
SPRFRGLHALRRYPNGEERCIACKLCEAVCPANAITIESEMRDDGTRRTIVYDIDLFK
CIFCGFCEEACPVDAIVETQIFDYAFKSRQGSIMTKERLLEVGSQNEQAINQARLEDA
KYK"
misc_feature 259836..260312
/locus_tag="Rmag_0245"
/note="NADH dehydrogenase subunit I; Provisional; Region:
PRK05888"
/db_xref="CDD:180305"
misc_feature 260004..260063
/locus_tag="Rmag_0245"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:200947"
misc_feature 260109..260177
/locus_tag="Rmag_0245"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:200947"
gene 260325..260933
/locus_tag="Rmag_0246"
/db_xref="GeneID:4555648"
CDS 260325..260933
/locus_tag="Rmag_0246"
/note="PFAM: NADH-ubiquinone/plastoquinone oxidoreductase,
chain 6;
KEGG: noc:Noc_2556 NADH-ubiquinone/plastoquinone
oxidoreductase, chain 6"
/codon_start=1
/transl_table=11
/product="NADH-ubiquinone/plastoquinone oxidoreductase,
chain 6"
/protein_id="YP_903499.1"
/db_xref="GI:118602284"
/db_xref="InterPro:IPR001457"
/db_xref="GeneID:4555648"
/translation="MNSEQIIFYILSFWFIVSSLAMIFSRNAAKAVLFLVLAFFNAAS
IWILLEAEFLAITLILVYVGAVMVLFLFVIKMLNIDKSTLRAKFTGYLPLGLIVAAII
VAEMSLVLGANQFGLDVFSSPERHGMDYSNITVLAMQLYTTYVYPFELAAVLLLIAII
AAITLVYRNETSRKKQSISEQVNVQAKDRVRLVSITPSKGDK"
misc_feature 260325..260921
/locus_tag="Rmag_0246"
/note="NADH:ubiquinone oxidoreductase subunit J;
Provisional; Region: PRK06638"
/db_xref="CDD:180642"
misc_feature 260325..260540
/locus_tag="Rmag_0246"
/note="NADH dehydrogenase subunit J; Provisional; Region:
PRK06433; cl14634"
/db_xref="CDD:199474"
sig_peptide 260325..260411
/locus_tag="Rmag_0246"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.899) with cleavage site probability 0.625 at
residue 29"
misc_feature 260457..>260645
/locus_tag="Rmag_0246"
/note="NADH dehydrogenase subunit J; Provisional; Region:
PRK06433; cl14634"
/db_xref="CDD:199474"
gene 260934..261239
/locus_tag="Rmag_0247"
/db_xref="GeneID:4555649"
CDS 260934..261239
/locus_tag="Rmag_0247"
/note="PFAM: NADH-ubiquinone oxidoreductase, chain 4L;
KEGG: rso:RSc2052 probable transmembrane NADH
dehydrogenase I (chain K) oxidoreductase protein"
/codon_start=1
/transl_table=11
/product="NADH-ubiquinone oxidoreductase, chain 4L"
/protein_id="YP_903500.1"
/db_xref="GI:118602285"
/db_xref="InterPro:IPR001133"
/db_xref="InterPro:IPR003214"
/db_xref="InterPro:IPR003215"
/db_xref="GeneID:4555649"
/translation="MVSLSDYLILSSVIFCIGLVGIFVNRTNIITLLMCVELILVAVN
TNFVAFSHFLGNEVGQIFVFFILTVAAAEVAIGLAILTLLFRNRGSISVDVTNSLKG"
misc_feature 260934..261236
/locus_tag="Rmag_0247"
/note="NADH:ubiquinone oxidoreductase subunit K;
Validated; Region: PRK05715"
/db_xref="CDD:180218"
gene 261242..263203
/locus_tag="Rmag_0248"
/db_xref="GeneID:4555650"
CDS 261242..263203
/locus_tag="Rmag_0248"
/EC_number="1.6.99.5"
/note="KEGG: eba:ebA4846 NADH dehydrogenase I, chain L;
TIGRFAM: proton-translocating NADH-quinone oxidoreductase,
chain L;
PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain
5/L domain protein; NADH/Ubiquinone/plastoquinone (complex
I)"
/codon_start=1
/transl_table=11
/product="proton-translocating NADH-quinone
oxidoreductase, chain L"
/protein_id="YP_903501.1"
/db_xref="GI:118602286"
/db_xref="InterPro:IPR001516"
/db_xref="InterPro:IPR001750"
/db_xref="InterPro:IPR003916"
/db_xref="InterPro:IPR003945"
/db_xref="GeneID:4555650"
/translation="MEKLYLTIAFSPLVGAILAGFFGTILGKTVTHILTILGVLISTV
LSLYVFNYHVLEQGEVFNQNLYTWMQLSNLNVSVGFLIDNLTAVMLVVVSFVSLMVHI
YTIGYMHDDTGYTRFFSYISLFTFSMFMLVMSNNFMQLFFGWEAVGLVSYLLIGFWHH
KESAIQANLKAFLINRVGDFGFLLGIGLVLAFSGSLDYMEVFSSLDKTMNQQLWGLDL
ITIICLLLFVGAMGKSAQVPLHVWLPGSMEGPTPISALIHAATMVTAGIFMVSRMSPM
FELSDVALMVIMIVGAITALFMGLLGIVQNDIKKVVAYSTLSQLGYMTVALGVSAYSV
AIFHLMTHAFFKALLFLGAGSVIVAMKHQQDIRKMGGLRKKMPITYWTAFIGTLALIG
FPGFSGFYSKDMIIEAVHFSSLPYASWVYVAVIVGVFITAFYSLRMFFLVFHGKSRVD
VHTAKHLHESAPSMIFPLIALSIPSLMIGYLTIEPMLFNGWLNNAITIASSHVSMTEL
RGEFHSAASMIPHAIQTLPFWMMIGGIVTAWIFSIYRTQWSDWIQKKCHRTSYVLESL
YGFDRFNDIVFVSGVKKLGNILYKVSDVGLIDKILVNGSAKLIGLVGKIIRPIQTGYV
YHYAFFMIFSLLIILTWVLFAGNNPLLEF"
misc_feature 261242..263179
/locus_tag="Rmag_0248"
/note="NADH:ubiquinone oxidoreductase subunit L; Reviewed;
Region: PRK06590"
/db_xref="CDD:180633"
sig_peptide 261242..261325
/locus_tag="Rmag_0248"
/product="hypothetical protein"
/EC_number="1.6.99.5"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.756) with cleavage site probability 0.735 at
residue 28"
misc_feature 261425..261610
/locus_tag="Rmag_0248"
/note="NADH-Ubiquinone oxidoreductase (complex I), chain 5
N-terminus; Region: Oxidored_q1_N; pfam00662"
/db_xref="CDD:109709"
misc_feature 261641..262468
/locus_tag="Rmag_0248"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 263206..264711
/locus_tag="Rmag_0249"
/db_xref="GeneID:4555651"
CDS 263206..264711
/locus_tag="Rmag_0249"
/EC_number="1.6.99.5"
/note="KEGG: tcx:Tcr_0829 proton-translocating
NADH-quinone oxidoreductase, chain M;
TIGRFAM: proton-translocating NADH-quinone oxidoreductase,
chain M;
PFAM: NADH/Ubiquinone/plastoquinone (complex I)"
/codon_start=1
/transl_table=11
/product="proton-translocating NADH-quinone
oxidoreductase, chain M"
/protein_id="YP_903502.1"
/db_xref="GI:118602287"
/db_xref="InterPro:IPR001750"
/db_xref="InterPro:IPR003918"
/db_xref="InterPro:IPR010227"
/db_xref="GeneID:4555651"
/translation="MQNSLLSLLIWLPIFSSVLVIFIGNNRVNTARWVSVIISILVFM
ISLSLYTGFDSSTHLMQFVEKESWILQLNIHYHIGVDGISMPLIILTTFSTILVIVAG
WEVIAKRCAHYMAAFLMMEGLIIGVFSSLDAILFYAFWEASLIPMLLIIGIWGGDNRV
YASIKFFLYTFLGSVFMLVSFIYMHNKGGSFLILDMHNLELSLEEQSYIFWAFFMAFA
VKVPMFPVHTWLPDAHVQAPTGGSVILAAIMLKMGGYGFFRFSLPITPDASLEFSEII
IVLSLIAIVYIGFVALVQRDMKKLIAYSSISHMGFVTLGVFTLFLTYKPDTIEGALLG
LEGAMVQMISHGFISAAMFLVVGVLYDRLHSREISTYGGVINSMPKFTGFALLFAMAN
VGLPGTSGFVGEFMVILGAIQANIWYGVLVASTLIVGAAYTLWMVKRVFWGVVSNPAV
ATLKDINAREFSMLAILVVAVLIMGLYPQPVLELMYISIEHLLHQALTSKF"
misc_feature 263206..264690
/locus_tag="Rmag_0249"
/note="NADH:ubiquinone oxidoreductase subunit M; Reviewed;
Region: PRK05846"
/db_xref="CDD:180285"
misc_feature 263593..264438
/locus_tag="Rmag_0249"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 264715..266169
/locus_tag="Rmag_0250"
/db_xref="GeneID:4555652"
CDS 264715..266169
/locus_tag="Rmag_0250"
/EC_number="1.6.99.5"
/note="KEGG: tbd:Tbd_1155 NADH dehydrogenase I chain N;
TIGRFAM: proton-translocating NADH-quinone oxidoreductase,
chain N;
PFAM: NADH/Ubiquinone/plastoquinone (complex I)"
/codon_start=1
/transl_table=11
/product="proton-translocating NADH-quinone
oxidoreductase, chain N"
/protein_id="YP_903503.1"
/db_xref="GI:118602288"
/db_xref="InterPro:IPR001750"
/db_xref="InterPro:IPR003916"
/db_xref="InterPro:IPR010096"
/db_xref="GeneID:4555652"
/translation="MNNFIEFDTSSLWIALPEIFLLSAIVIVLLIDLFLDKNFKQVTY
YLIQLSLFITGLLAFNLIDHPQIIIFGGSFVLDNMASVFKVFMMAATMVAMVYSRHYL
RTHSLFRGEYFVLVLLSVLGMMVMVSGYSLLTLYLGLEILSLSLYALIAIARERADAI
EAALKYFVLGAIASGLLLYGMSMIYGISGSLNINDIASFASNTNLDSRETLIINFGLV
FLVIGIAFKLGAVPFHMWVPDVYQGAPTSVTLFISTVPKIAAFAMLVRILVDGLDSMH
AYWSDLFMVLSILSIALGSVVALMQSNIKRMLAYSTISHVGFIMLGFVAGTPIGYGAA
AFYMLVYVLMSLAAFGMIILLNKQGFEIDQISDFKGLNKHAPWFALMMLIIILSMAGV
PPLVGFYSKFFILQQVVSAGFITIAVIVVIFAVISAYYYLQIIKSMYFDETDKKITIY
ASIDIQLVLSINAILILAVGLFPDFWMKLALSLF"
misc_feature 264727..266166
/locus_tag="Rmag_0250"
/note="NADH:ubiquinone oxidoreductase subunit N;
Provisional; Region: PRK05777"
/db_xref="CDD:180252"
misc_feature 265207..265932
/locus_tag="Rmag_0250"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 266494..274953
/locus_tag="Rmag_0251"
/db_xref="GeneID:4555653"
CDS 266494..274953
/locus_tag="Rmag_0251"
/note="PFAM: glycosyl hydrolase, BNR repeat-containing
protein;
KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related
protein"
/codon_start=1
/transl_table=11
/product="BNR repeat-containing glycosyl hydrolase"
/protein_id="YP_903504.1"
/db_xref="GI:118602289"
/db_xref="InterPro:IPR001547"
/db_xref="InterPro:IPR002860"
/db_xref="GeneID:4555653"
/translation="MKINNAKTTTQLKTLQTQAQAFSKTLSKVIVIVIKGEQHIRVIP
GHAYEISIEDGRNFDLIAQKVDNDLKVLLPNDTIVVFNEYFKVCVSDLSCLVSLPSED
GIYHIIENNFVTFTNNSQIIHFYGDESVLSAVATNQSTVFAESFNEVYLTNIFSSLSI
DSGEVLDGLLIVGLAGAGGGISSLEDVILKMVVSAGEFIENNGGLVKLYKYDPFIEKL
TFFTDVDLNNSGMQDFSIGNYKGIIIAKLIDTNGNNADFRDEATGVDTDISATLLAVI
DASKGGNIDVSITPLTTIAALRMGLTTSGELPTGIMLDISTISDANKGVAKAFGLGND
ADVVTTKIQTVITQDGETSISNAYGNILAALSGVDSDKNSGNMAATITQFEEKLIGMG
ADLKLNTEGQEDLLAGASKAETSNSKIDVGLGLATTIKDTDAIDSSTTINITLGFEDT
GISAIDNIVKAYDLDGHDVGTDEGIRINVIGVSSNWVYSTDAGINWFIGATDFELGTG
FNLVEKTTTYNKADIMVRNGTDILAGFIEGTEATLGAGTIFVDGDMPSGITSTELSSS
SSANFAVINISVTAGSTWRYSTENGADGTWKVVDVGSSFSLIANAIYTINQIQVKEID
AAGNESTILKNAAEITGSILALNLNRDTGNSIFDGKTNDAIINVITGPDVIWEYTING
GTDWTTGSRGNGSFELLGSDSHAVSDIKVKIAGQDDSNVITLSHYSATSIDILTANVD
ATLTLASAGDTGASSDNITSNKIINISGGVTWEYSTDGGENWIKGSDSSFELSSQSYV
QGQIQVKQVDEYGNYSQPTLFDAITIDYIAPTITLFTLNTVGGSYGVNSNINITSTVN
EEIASGTITVTLNTGETVILTVSADDKTLLTGNYIVNTGNTTTGLKVTSFTINSIIDI
AGNIMTDNMVPADKKILYNIEDRDSTIVIDGVAPSITCATNPNSAQILKIGETLSVEL
TLDEMVTLTNAAIAIITLIIDDRDGSTMEVTATATGNGIVSNTLIFTTAALPNNLNDN
NGVKVKANSLSFTSGEFKDAVGNDVSSVFTEISEIANTQVDTIAPTVILSGNIVPTAN
LTMIFDENIIKVAGKEIKIYKADGTFVEAVDSVEVTNDIVTINPATDLESNIAYYVII
AAGAFKDIAGNEYAGISESSVWTFDTASLSTTVAWSGMGVNSGDEYINLSELTNVTIS
GHIANPYGVGNVKVLEIKFISSNGGTAYTVPSSLVGTAITIDGSGNWVLDNDSIWASS
ANFTDGKAYKVKVKLTAILDNNPVEGIGMSSDSVVFDTVAPVTPNAVLITDSGSSSSD
SITNNSAINAPVNKEIGATVEYKIATGSWSTTYIAPTTNGDYIVKVRQIDKTGNASSE
QIITFTLDVTTDVVDVTSSVIVNKMDITSGVAFDADIVTPNASDIEKITVIFGNIQTG
DNLLLDVERTLSSSFTQTTSVTLGIANVNYIYASNKLTITKHSGGSFSATEVESIVEA
VKLKNTNSTPGDIDRTATFAYVDTAGNTGASAQATMTVVATIPTIVSVTDDHDQTGQE
VTSEMTIYTVTFSHGVVSSFESNDVILVDTLGAPIVITNWIIGVLTEVPDSSGTQWTV
SVTPPLGENTVDVTAARLKIEKTGLVDIYGNDPFDINHTQSIADAQSFDTQPPSIPTL
TLNTEISAGTVTKDRVMNVTNLVADVASWQYSVDGGVSWTTVSDSSVTNFTLTDGTYG
ADFIRVKQTDNAGQTSNIAKYTINFSIDTAIDTPTFSPVDNGKMSNTDNFVLTFAESM
IAVTGKNIIIKQLSDGSVIETIAADNSAQVSINATGVVTINPTDINLVARTSYYVEVE
AGAFKDNAGNESTAITGSTVWNVIVNEMNATIMVATDNKINAIENTTDIVIAVIIGAD
STILSTLLLGDFTVTITKVGGSVVSISGTAYDSSTGIWRAIINDGGLINGDIYTVQAN
ITSSAMGINTSSTQTVTVGTNAPTLTLTDNKAIVGNDNVVNITESANGFSMTGISTGL
TIGSEVSVVFNTITYTTTVTGASNNWSIDIPSTDTNVLIEGTTYIVTVNASDNHGNPA
TQLSQNITVDKTAPVSTIVIDEIITDLSTITGQTSANIDVEIKLDTDNNNSYDDATYI
VISDANGNWTLDLNSAASLISGSAPTFASIDTQLGVQVNIIDTAGNMTTRTETATKQA
SSYSISDSRVIEGTTGTKTMTFIVTRGGDFSDAGTVDYAVNTTLSLAKFSSSANGVDD
DYSGSTSGTVTFAVGERFKEITFTVNGDYYKEVNQNIIVDLTNPTEGAISKATGIGEI
VEVDITQLAAAYSLKDVNSDLATNAVRVRRSSDNTELDIGFDKYDNLDTRALLNFVGR
DTDDTGYVSIWYDQTGNGRDMTQTSSTKQGVIVSDGVVQTHSNGQTTIGFNRGLNGAN
DDFMEAIGTGGGTVTNLEVYVTYEFNIIRVGTLFNLGTSIEDGRIIAHAPWSSGAIYW
DAGSSTGDARLFVSDAQQSGQVSQLVFTANYNHTGAGTVLQNNVDAKQGIFVDGDNKA
ADETLKGNSLVLGNTWVLMSFGYGSTVCQSGKVSEFLVYTSNTEAVEPIGLFGSANNN
VFTYAGESALVMLDGKLGYDMIKLSNASDINLDVTSVSLVNIEVINMQNVESNRLTIN
NTQLDTNVSILSVLMNTGDSIVYESNTFNYSATQEAVNFGTTDNDIINMSSFNETVYG
RGGNDTFVYKSWSDAAASSSADSITDFTIGMGADKDILNLKDLLTDYDSTNLADFINL
SQIGGNTIISVDKNGAMGDVFTEDINITLTGVTEASLVTMINDGNLVLE"
misc_feature 269704..270009
/locus_tag="Rmag_0251"
/note="Bacterial Ig-like domain; Region: Big_5; pfam13205"
/db_xref="CDD:205386"
misc_feature 272605..272757
/locus_tag="Rmag_0251"
/note="Bacterial Ig-like domain (group 3); Region:
Big_3_4; pfam13754"
/db_xref="CDD:205928"
misc_feature 274699..274941
/locus_tag="Rmag_0251"
/note="type I secretion C-terminal target domain (VC_A0849
subclass); Region: T1SS_VCA0849; TIGR03661"
/db_xref="CDD:211857"
gene 275408..275623
/locus_tag="Rmag_0252"
/db_xref="GeneID:4555654"
CDS 275408..275623
/locus_tag="Rmag_0252"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903505.1"
/db_xref="GI:118602290"
/db_xref="GeneID:4555654"
/translation="MIQRTDTDLLDFTSAKISSVNGNIATIFGLNDDVKKSTNTVFNE
LVNGVTNDKLSQNITNNLIVGAKKSDE"
gene 276554..277822
/locus_tag="Rmag_0253"
/db_xref="GeneID:4555655"
CDS 276554..277822
/locus_tag="Rmag_0253"
/note="PFAM: outer membrane efflux protein;
KEGG: cvi:CV1734 probable outer membrane protein"
/codon_start=1
/transl_table=11
/product="outer membrane efflux protein"
/protein_id="YP_903506.1"
/db_xref="GI:118602291"
/db_xref="InterPro:IPR003423"
/db_xref="GeneID:4555655"
/translation="MIKRTMVLLFFGFLLGGVSVQEQSKGEFNLSNLISKAIAYHPSI
KSNIFLEDSAKNEITSAKWQYFPIPKFSVSQVDSSNTDRNYNGDSRVSTISLTQPLWA
GGSIDAGLAKSRAKLLLAQASTKVVQQDLALRVINAYSKWYDSYLKKKSYSKSQKEYS
MLRTRLRRRIKQGLSSSSDLNLVNSRSTQAEASFNSAIIQHKNSLLNLEGLLGTSIDS
KDLIRDFSIVKFETNQTKLSRKALLTSPRVKQIKAESLVIEAELDQSHAKLYPDINLK
LERQWGSFTTKDAKTENRIFIEFNSSFGAGLSNFSQTRQIKSRYQSLQAKIKDEENKV
AQQIKLDWMSSVSLKKQKILLELSLANIEKVRKSYYRQFLAGRKTWQDVMNSIREVSQ
LESQLASVYGEIILANWRIFVYVEDIGALL"
sig_peptide 276554..276622
/locus_tag="Rmag_0253"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.995) with cleavage site probability 0.545 at
residue 23"
misc_feature 276638..277786
/locus_tag="Rmag_0253"
/note="type I secretion outer membrane protein, TolC
family; Region: type_I_sec_TolC; TIGR01844"
/db_xref="CDD:162556"
gene 277840..278184
/locus_tag="Rmag_0254"
/db_xref="GeneID:4555656"
CDS 277840..278184
/locus_tag="Rmag_0254"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903507.1"
/db_xref="GI:118602292"
/db_xref="GeneID:4555656"
/translation="MVFDRADKILWHSTISFKEEQNIIDKILVEKIIWYIDNTQNFKL
SLKKKDFVTFVEFFDKEEKLSREKLIKIAIQKTTKITPVEEIMQKEQTDIKQEQNKKQ
SNIIQKLIKKNC"
gene 278611..280689
/locus_tag="Rmag_0255"
/db_xref="GeneID:4555657"
CDS 278611..280689
/locus_tag="Rmag_0255"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: par:Psyc_1599 ABC drug efflux transporter, fused
ATPase and inner mebrane subunits"
/codon_start=1
/transl_table=11
/product="ABC transporter related"
/protein_id="YP_903508.1"
/db_xref="GI:118602293"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="GeneID:4555657"
/translation="MEQSLLFSLQRLSKLQRSRFNALELQQIIEDECNSSIEKLVMLH
NVCHALLIPNPKALKSINDPSLLPLLIFDEFQQWGILKSFNAKGEWVAEWFSKEKNSW
LEVILYDLSKYNIFAIKMKKKFDIGNGRIFKIVKTELITHKKWLIDASLAGVLINIVA
VVSAFYSMQIYDRVVPTGAQQTLLVLTIGVLAITVLDFIAKLVRAGLYEKLIDNIDRR
LSRDIYKRFLALRMDQLPKSVGSLASQMRGYESVRSFLSTITTYLVVDVPFVLFYVLL
IATIGGYLALLPMIFFVIATLTGLYFHKKIETLADNINESVNLRVGLLVESVEGAETI
KSGQGGWRMLSNWMNVTDEGRSYDLEMKRMTDQSQYMVAFFQQSSFVLMVASGALLIG
GGDLTMGGLIACSILSGRILAPVAQIPSHLVQWANTKSAIRSLDMILDLKCDHDGIDS
PIVFENLRGEFYIEAKTQINYGEKVALALPEMRINPGEKIGVLGPIGSGKTSLLRLLS
GMYKPNVGRILLDDIDLAHISKPILAEKIGFLQQEGRLFKGTLRENLILGLVDPDDDK
ILKVSKLTGLLDSVISTTEKGLEQEIFEGGLGLSGGQKQLLNLTRVVLRAPKIWLLDE
PTASVDRNLEVLLINMFKKIIKVEDTLVLVTHKIEMIELVDRLIVVNKNQIVMDGPKA
DVIAQLSGKT"
misc_feature 278776..280683
/locus_tag="Rmag_0255"
/note="type I secretion system ATPase, LssB family;
Region: type_I_sec_LssB; TIGR03375"
/db_xref="CDD:211814"
misc_feature 279061..279855
/locus_tag="Rmag_0255"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature 280027..280647
/locus_tag="Rmag_0255"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 280090..280113
/locus_tag="Rmag_0255"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(280099..280104,280108..280116,280234..280236,
280477..280482,280576..280578)
/locus_tag="Rmag_0255"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 280225..280236
/locus_tag="Rmag_0255"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 280405..280434
/locus_tag="Rmag_0255"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 280465..280482
/locus_tag="Rmag_0255"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 280489..280500
/locus_tag="Rmag_0255"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 280564..280584
/locus_tag="Rmag_0255"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 280701..281870
/locus_tag="Rmag_0256"
/db_xref="GeneID:4555658"
CDS 280701..281870
/locus_tag="Rmag_0256"
/note="PFAM: secretion protein HlyD family protein;
KEGG: par:Psyc_1598 HlyD family secretion protein"
/codon_start=1
/transl_table=11
/product="secretion protein HlyD family protein"
/protein_id="YP_903509.1"
/db_xref="GI:118602294"
/db_xref="InterPro:IPR003997"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:4555658"
/translation="MNLEKILLKIERSFSIVYVLLGGFIAFILWASLFDIDETVRCQG
KVVANGSSQIIQVADGGVLSKLLVSEGEHVQQRQLLATLEKDRAQASYYEIRSQVAYL
KSALARANAEILEKPIVFDELTKNYPDFMNAQKALYVQKKRSLNQEVSMLEEGLAMNI
EEWEITQSLEKTGDVSQLEVLRAKQKVLYFKRKVVDTKNKYYEKTSSEIEKLEGELAK
NLYKLKKQKSVLEYTNIYSPVSGIVKELKVTTVGGVLRAGEQLMEISPSQGGVILEAK
INPVDIGRLKLGMPVMIKLDAFDYTIFGGLKGTLNYISSDTLLDKDPSGRQITFYQVN
VKIEGPEYEDNVKSKVINVKLGMSGTIDVKVGKRSLFTYLIKPISRGFSGALNEK"
sig_peptide 280701..280796
/locus_tag="Rmag_0256"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.754) with cleavage site probability 0.754 at
residue 32"
misc_feature 280746..281867
/locus_tag="Rmag_0256"
/note="type I secretion membrane fusion protein, HlyD
family; Region: type_I_hlyD; TIGR01843"
/db_xref="CDD:130902"
misc_feature 281403..281723
/locus_tag="Rmag_0256"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene complement(282381..283169)
/locus_tag="Rmag_0257"
/db_xref="GeneID:4555659"
CDS complement(282381..283169)
/locus_tag="Rmag_0257"
/note="TIGRFAM: biotin biosynthesis protein BioC;
PFAM: Methyltransferase type 11; Methyltransferase type
12;
KEGG: tcx:Tcr_1981 biotin biosynthesis protein BioC"
/codon_start=1
/transl_table=11
/product="biotin biosynthesis protein BioC"
/protein_id="YP_903510.1"
/db_xref="GI:118602295"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR011814"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4555659"
/translation="MSQVRFAFNKASNNYNDYAFLQKEIAVRLDQKLNIISSKADIIL
DLGAGTGLLSQQLTKRFSNSKIICLDFAQQSLKYNPSSSKICANANYLPLPDNSVDMI
TSNLMMQWCQNLNILFSECFRVLKNNGLILFSTFGPDTLKELKKSWSIVDDKTHVNTF
IDMHNIGDQMLQNGFQNPVMEMETLTLTYQTVIDLLRDLKAIGAQTVAKRSKSLTGKD
KFQLMIRMYESYKNNGKLPATYEVIYGHAWKKTTGVNNITLESQ"
misc_feature complement(282639..283115)
/locus_tag="Rmag_0257"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature complement(282762..283043)
/locus_tag="Rmag_0257"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(282855..282857,282903..282911,
282957..282962,283014..283034))
/locus_tag="Rmag_0257"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(283157..284008)
/locus_tag="Rmag_0258"
/db_xref="GeneID:4555660"
CDS complement(283157..284008)
/locus_tag="Rmag_0258"
/note="PFAM: periplasmic solute binding protein;
KEGG: rty:RT0013 probable zinc/manganese ABC transporter
substrate binding protein"
/codon_start=1
/transl_table=11
/product="periplasmic solute binding protein"
/protein_id="YP_903511.1"
/db_xref="GI:118602296"
/db_xref="InterPro:IPR006127"
/db_xref="GeneID:4555660"
/translation="MIFPSLLTIITLLSANIFAAPNIVVSIKPIQSIVNSLTQGITES
KLLLKTNQSAHYTHLKPSQLSLLSHADLAIFIHPTFESGLKKVLANLNEKLIIGNVKN
IHLIHNEKHQKVVNYHLWLDVNNMQIFAKKLIERLIKIDPDNQSNYRTNLNKLNKNLD
KLKQDINQKLSIYKPKVLASYSNTFDYFTNANQLKKSINITNYHGERLSIFKILEAKK
IMKNTQTKCLLSTIEVPKKRTNTLTEGLNINSVSIDIIGLNIQQGSDYYFELMHNITN
KVVQCLR"
sig_peptide complement(283949..284008)
/locus_tag="Rmag_0258"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.999) with cleavage site probability 0.999 at
residue 20"
misc_feature complement(283163..283996)
/locus_tag="Rmag_0258"
/note="Helical backbone metal receptor (TroA-like domain).
These proteins have been shown to function in the ABC
transport of ferric siderophores and metal ions such as
Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site
is formed in the interface between...; Region: TroA-like;
cl00262"
/db_xref="CDD:199270"
misc_feature complement(283163..283942)
/locus_tag="Rmag_0258"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:201717"
misc_feature complement(order(283604..283606,283742..283744,
283751..283756))
/locus_tag="Rmag_0258"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29734"
gene complement(284049..285005)
/locus_tag="Rmag_0259"
/db_xref="GeneID:4555661"
CDS complement(284049..285005)
/locus_tag="Rmag_0259"
/note="PFAM: putative methyltransferase;
methyltransferase, putative; Methyltransferase type 11;
KEGG: vvy:VV2291 hypothetical protein"
/codon_start=1
/transl_table=11
/product="methyltransferase, putative"
/protein_id="YP_903512.1"
/db_xref="GI:118602297"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR001601"
/db_xref="InterPro:IPR003358"
/db_xref="InterPro:IPR010017"
/db_xref="InterPro:IPR013216"
/db_xref="GeneID:4555661"
/translation="MLSDFYKYATSTQLDLICTQLINLSTHVFNTNNGNIPKWEQAIK
QIKTQNTGSLDFITPYLNISAHHINNFTLEKSLKQLIPWRKGPYQIGDLQLDSEWRGD
MKWHRLIPHIKPLKDKVVLDVGSGNGYFTYLMAISGAKIALGIEPFLLFNYQFQAIRT
LINNLPNVFVLPLSLDKIPKKPLFDTVFSMGVLYHQKDYELHLNQLKDVMKPSGELIL
ETLIIDLEKVKKIIPKGRYAKMRNVYCLPSKNTLRTWLEDAEFKNIKLLDVTKTTSKE
QRATHWIGNNTQSLKNFLDPNNRDLTIEGFPAPKRAIFICQK"
misc_feature complement(284214..284690)
/locus_tag="Rmag_0259"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature complement(284364..284648)
/locus_tag="Rmag_0259"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(284436..284438,284481..284489,
284568..284570,284619..284639))
/locus_tag="Rmag_0259"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 285105..285485
/locus_tag="Rmag_0260"
/db_xref="GeneID:4555662"
CDS 285105..285485
/locus_tag="Rmag_0260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903513.1"
/db_xref="GI:118602298"
/db_xref="GeneID:4555662"
/translation="MINKTLGLVVTFALVGSVMAGGDDLDMGPVEPIFDKVVVKSEHN
IDTMILTDTSKVIGQTITGAPVTIAAHEACKDRLNLFNTNIEKFKQALASGFLYNTGP
LNEMGTLFSPKRWKDYFFCVENHQ"
sig_peptide 285105..285167
/locus_tag="Rmag_0260"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.908 at
residue 21"
gene complement(285556..286113)
/gene="frr"
/locus_tag="Rmag_0261"
/db_xref="GeneID:4555663"
CDS complement(285556..286113)
/gene="frr"
/locus_tag="Rmag_0261"
/note="Rrf; Frr; ribosome-recycling factor; release factor
4; RF4; recycles ribosomes upon translation termination
along with release factor RF-3 and elongation factor EF-G;
A GTPase-dependent process results in release of 50S from
70S; inhibited by release factor RF-1; essential for
viability; structurally similar to tRNAs"
/codon_start=1
/transl_table=11
/product="ribosome recycling factor"
/protein_id="YP_903514.1"
/db_xref="GI:118602299"
/db_xref="InterPro:IPR002661"
/db_xref="GeneID:4555663"
/translation="MLNEIQQDAQSRMNKSVASLKNAFSKIRANRAHSSLLEQIHVDY
YGSMVPLSQVANISVEDSRTFKVSPWEKDMVAVIEKAIMTSNLGLNPQTMGQIMRIPL
PPLTQERRGELVKIVKDEAEQAKVAIRNIRRDANSDFKELLKEKEISRDGARKAENSI
QKITDTYIKEIEAKFCEKENSLLEI"
misc_feature complement(285559..286113)
/gene="frr"
/locus_tag="Rmag_0261"
/note="ribosome recycling factor; Reviewed; Region: frr;
PRK00083"
/db_xref="CDD:178850"
misc_feature complement(285565..286101)
/gene="frr"
/locus_tag="Rmag_0261"
/note="Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are 'recycled'
and ready for another round of...; Region: RRF; cd00520"
/db_xref="CDD:29621"
misc_feature complement(order(285799..285810,286018..286029))
/gene="frr"
/locus_tag="Rmag_0261"
/note="hinge region; other site"
/db_xref="CDD:29621"
gene complement(286117..286836)
/gene="pyrH"
/locus_tag="Rmag_0262"
/db_xref="GeneID:4555157"
CDS complement(286117..286836)
/gene="pyrH"
/locus_tag="Rmag_0262"
/EC_number="2.7.4.-"
/note="Catalyzes the phosphorylation of UMP to UDP"
/codon_start=1
/transl_table=11
/product="uridylate kinase"
/protein_id="YP_903515.1"
/db_xref="GI:118602300"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR011817"
/db_xref="GeneID:4555157"
/translation="MLMSKYKRILLKLSGEALANTENIIDPVALNKVVNIIKSVLSQN
VEIAIVVGGGNIFRGAVLAQAGMNRITGDHMGMLATVMNALAIADVCQKNKVDTLVMS
GFSIGGGVCDSINHVHAKQALNEGKVVIFCAGTGSPCFTTDTGAALRAIEIDADAVFK
ATKVDGIYTSDPIKNSDAKRYDSLSFDGAIEKNLQIMDVSAFALCREHDLEICVFSML
ENTNTLSDILKGKPLGTIVRK"
misc_feature complement(286126..286818)
/gene="pyrH"
/locus_tag="Rmag_0262"
/note="UMP kinase (UMPK)-Ec, the microbial/chloroplast
uridine monophosphate kinase (uridylate kinase) enzyme
that catalyzes UMP phosphorylation and plays a key role in
pyrimidine nucleotide biosynthesis; regulation of this
process is via feed-back control and...; Region:
AAK_UMPK-PyrH-Ec; cd04254"
/db_xref="CDD:58620"
misc_feature complement(order(286324..286329,286333..286335,
286339..286341,286348..286353,286408..286413,
286675..286683,286789..286794,286801..286803))
/gene="pyrH"
/locus_tag="Rmag_0262"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(286411..286419,286423..286428,
286432..286434,286606..286611,286618..286620,
286660..286665,286675..286683))
/gene="pyrH"
/locus_tag="Rmag_0262"
/note="uridine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(286213..286215,286381..286386,
286393..286395,286420..286428,286432..286434,
286456..286458,286474..286476,286483..286485,
286495..286497,286540..286542,286570..286572,
286591..286593,286612..286617,286639..286644))
/gene="pyrH"
/locus_tag="Rmag_0262"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58620"
gene 286912..289728
/locus_tag="Rmag_0263"
/db_xref="GeneID:4555158"
CDS 286912..289728
/locus_tag="Rmag_0263"
/note="TIGRFAM: excinuclease ABC, A subunit;
PFAM: ABC transporter related;
KEGG: vch:VC0394 excinuclease ABC, subunit A"
/codon_start=1
/transl_table=11
/product="excinuclease ABC, A subunit"
/protein_id="YP_903516.1"
/db_xref="GI:118602301"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR004602"
/db_xref="GeneID:4555158"
/translation="MDQISIRGARVHNLKNIDIDIPRNKLVVITGLSGSGKSSLAFDT
IYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPTISIEQKATSHNPRSTVGTIT
EIYDYLRLLFARAGIPKCPKHQINLESQTISQMVDSIVKLPMGEKIMLLAPIVQNRKG
SHAKLLEELNHQGFLRARVDGVVVYIDEMEVLNGKVNHTIEIVIDRLKVREDMASRLS
ESLETALNLSAGLVRVASMEDEPSWQEGVFSAKFSCVECGYSLSELEPRIFSFNNPVG
ACQTCDGLGVKDTFDEQKIVANPSISLADGAVYGWGRSNAYFYQMLILVSKYYDFNIE
TPYEQLSDKHKKIVLYGSGTDDIDFSKIKGRKGWSNKAKPFEGIIPRMIRRYEESDIR
SVREELSRYVVSKDCVQCHGDRLNESARNVFIDGKNLSNITKLSIADIYDFFKELKLE
GARGQIADKILKEIVQRLAFLINVGLEYLSLNRRANSLSGGEAQRIRLASQIGAGLMG
VLYVLDEPSIGLHQRDNQKLLNTLTYLRDIGNTVIVVEHDKEAIKQADYVIDIGPGAG
IHGGEIVAMGSPKDIENNLKSLTGDYLSGRQSIEVPTKRKNVSQWLRIKGAKGNNLNK
VDLSIPVGVLTCVTGVSGSGKSTLINDTLYALVARELNHAQTTPAEYESIEGLNYFDK
IVNIDQSPIGRTPRSNPATYTGVFSLVRDLFSQTLEARTRGYKAGRFSFNVKGGRCEA
CKGDGLIKVEMHFLPDVYVLCDVCQGQRYNQQTLKVFYKGKSIAQVLDMTVEQACEFF
QPMPKIKRKLQTLMDVGLSYIILGQNATTLSGGEAQRIKLAKELSKMDTGQTLYILDE
PTTGLHFHDIKLLLSVINRLRERNNTIVIIEHNLDVIKTADWIVDLGPEGGNKGGQII
AFGTPEEVAQVKGSYTGEYLKAYL"
misc_feature 286912..289725
/locus_tag="Rmag_0263"
/note="excinuclease ABC subunit A; Reviewed; Region: uvrA;
PRK00349"
/db_xref="CDD:178984"
misc_feature 286921..>287262
/locus_tag="Rmag_0263"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature <288217..288639
/locus_tag="Rmag_0263"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature 288745..289668
/locus_tag="Rmag_0263"
/note="The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_II; cd03271"
/db_xref="CDD:73030"
gene complement(289711..290454)
/locus_tag="Rmag_0264"
/db_xref="GeneID:4555159"
CDS complement(289711..290454)
/locus_tag="Rmag_0264"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903517.1"
/db_xref="GI:118602302"
/db_xref="GeneID:4555159"
/translation="MKLLTLIIFTILINSTAHALKAHTANYKLSINGFKIAEEVRTLY
KLDKHYFYTANARTSGLAAFIKDYSIAASSIFSSNPQGVDAIHYQIIEKEDGKLVKNY
DIDIHSKNHSIMPILTKTQSKIRTWHSKSGNIVDPLSLFLALSNDLKHNPNQSIFTYQ
VTNGKSIEQHQYKRTNGHFLKINNQSIKAIKVNRINANNSNIKAYFLPKYQYLPVLIE
QNKGNKRYTYTLTDLQIKNEVKDKLQVSF"
sig_peptide complement(290395..290454)
/locus_tag="Rmag_0264"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.991) with cleavage site probability 0.783 at
residue 20"
misc_feature complement(289753..290388)
/locus_tag="Rmag_0264"
/note="Protein of unknown function (DUF3108); Region:
DUF3108; pfam11306"
/db_xref="CDD:204623"
gene complement(290451..291056)
/locus_tag="Rmag_0265"
/db_xref="GeneID:4555160"
CDS complement(290451..291056)
/locus_tag="Rmag_0265"
/note="TIGRFAM: phosphoribosylglycinamide
formyltransferase;
PFAM: formyl transferase domain protein;
KEGG: pha:PSHAa1948 phosphoribosylglycinamide
formyltransferase 1"
/codon_start=1
/transl_table=11
/product="phosphoribosylglycinamide formyltransferase"
/protein_id="YP_903518.1"
/db_xref="GI:118602303"
/db_xref="InterPro:IPR001555"
/db_xref="InterPro:IPR002376"
/db_xref="InterPro:IPR004607"
/db_xref="GeneID:4555160"
/translation="MNGIVLISGNGSNLQSIIDHSAAIDLDIKAVISNHSSAYGLKRA
EYANILTHTLNHKQFSSVEEFDQELSNIINQYNPEIIILAGFMRILSAKFTNQYSDKM
LNIHPSLLPKFQGLNTHKRVLEAKESQHGVSIHFVTEQLDGGPIIAQVSVDVFDTDTT
ESLAKRVLLEEHKLFHKVIHWFTQGRLKLEKNHATLDGKVL"
misc_feature complement(290466..291044)
/locus_tag="Rmag_0265"
/note="phosphoribosylglycinamide formyltransferase;
Reviewed; Region: purN; PRK05647"
/db_xref="CDD:180182"
misc_feature complement(290511..291044)
/locus_tag="Rmag_0265"
/note="Phosphoribosylglycinamide formyltransferase (GAR
transformylase, GART); Region: FMT_core_GART; cd08645"
/db_xref="CDD:187714"
misc_feature complement(order(290544..290546,290631..290636,
290643..290648,290652..290654,290712..290714,
290736..290747,290772..290774,290787..290810,
291015..291023,291036..291038))
/locus_tag="Rmag_0265"
/note="active site"
/db_xref="CDD:187714"
misc_feature complement(order(290544..290546,290736..290738,
290742..290744,290802..290807,291018..291023))
/locus_tag="Rmag_0265"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187714"
misc_feature complement(order(290631..290636,290643..290648,
290745..290747,290772..290774,290787..290795,
290799..290801,290808..290810))
/locus_tag="Rmag_0265"
/note="cosubstrate binding site; other site"
/db_xref="CDD:187714"
misc_feature complement(order(290631..290633,290739..290741,
290745..290747))
/locus_tag="Rmag_0265"
/note="catalytic site [active]"
/db_xref="CDD:187714"
gene complement(291071..292072)
/locus_tag="Rmag_0266"
/db_xref="GeneID:4555161"
CDS complement(291071..292072)
/locus_tag="Rmag_0266"
/EC_number="6.3.3.1"
/note="KEGG: eca:ECA1254 phosphoribosylaminoimidazole
synthetase;
TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase;
PFAM: AIR synthase related protein; AIR synthase related
protein domain protein"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine cyclo-ligase"
/protein_id="YP_903519.1"
/db_xref="GI:118602304"
/db_xref="InterPro:IPR000728"
/db_xref="InterPro:IPR004733"
/db_xref="InterPro:IPR010918"
/db_xref="GeneID:4555161"
/translation="MSSLSYLDSGVDITKGNSLIKQIKPIAKSTTRPGVLAGLGGFGA
MFELPINKYKNPVLISGTDGVGTKLKVAQMLNKHDTIGIDLVAMCVNDLIVQGAEPLF
FLDYYATGQLNTELAISVIYGIGEGCKQSGCALIGGETAEMPGMYQGEEYDLAGFCVG
IADKDKIIDGTEVTKGDHIIALASSGPHSNGYSLIRKILAQSDPTDAQLNALIKPTKI
YVKSVLSLIEKFSVHAISHITGGGLLENIPRVLPENLSAKLDASSWQLLSIFQFLQDN
GNINMMEMYRVFNCGIGMVIIVPSEQSTDVIQHLNELDEHAWLVGEITSNQGNQVII"
misc_feature complement(291104..292063)
/locus_tag="Rmag_0266"
/note="phosphoribosylaminoimidazole synthetase;
Provisional; Region: PRK05385"
/db_xref="CDD:180049"
misc_feature complement(291101..291964)
/locus_tag="Rmag_0266"
/note="PurM (Aminoimidazole Ribonucleotide [AIR]
synthetase), one of eleven enzymes required for purine
biosynthesis, catalyzes the conversion of
formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
ADP, and Pi, the fifth step in de novo purine
biosynthesis; Region: PurM; cd02196"
/db_xref="CDD:100032"
misc_feature complement(order(291326..291328,291602..291604,
291614..291619,291638..291640,291644..291646,
291656..291658,291749..291751,291758..291760,
291767..291769,291785..291787,291797..291799,
291863..291865,291881..291883,291887..291889,
291893..291904,291935..291949))
/locus_tag="Rmag_0266"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100032"
misc_feature complement(order(291656..291664,291797..291799))
/locus_tag="Rmag_0266"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:100032"
gene 292127..292693
/locus_tag="Rmag_0267"
/db_xref="GeneID:4555162"
CDS 292127..292693
/locus_tag="Rmag_0267"
/note="PFAM: CDP-alcohol phosphatidyltransferase;
KEGG: noc:Noc_1186 CDP-alcohol phosphatidyltransferase"
/codon_start=1
/transl_table=11
/product="CDP-alcohol phosphatidyltransferase"
/protein_id="YP_903520.1"
/db_xref="GI:118602305"
/db_xref="InterPro:IPR000462"
/db_xref="GeneID:4555162"
/translation="MSFSSLPNALSILRIILTVPVVMALLNHQYFLAMVLFFIAGVTD
ALDGWIAKRYSFQSRLGSILDPMADKLLLVSSFVALYVIGLLPLWLLVLVFLRDFMIV
SGTVGRFIGSGTSKNDLLSPSKLSKINTVLQIALVLFLVMVQIYPVSTQYSTVFFIII
ATSTVLSGADYMWIWVEQVILQEKKNPQ"
misc_feature <292130..292639
/locus_tag="Rmag_0267"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 292690..293364
/locus_tag="Rmag_0268"
/db_xref="GeneID:4555163"
CDS 292690..293364
/locus_tag="Rmag_0268"
/note="PFAM: Chromosomal replication initiator, DnaA;
KEGG: cbu:CBU_1734 chromosomal replication initiator
protein DnaA"
/codon_start=1
/transl_table=11
/product="regulatory inactivation of DnaA Hda protein"
/protein_id="YP_903521.1"
/db_xref="GI:118602306"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:4555163"
/translation="MNQLGLPLSLNSKMLLSNFIGKKNQQVLDFVNQLLTQKSSAVVF
ISGAKSSGKTHLLQGCAFSALDGQLGVIYIDIKQELPEGIINDLVSVDWICIDNVDYL
SIIQQQALFDLYNRIKLADTKLIVSAGSLPGELNLLKDLKTRLSLAVVFTLETLNDEQ
KILIIERKMTDININIDIKVYHYLFKVFSRDLNDVLNAINILDETSLQKKNNISIPFV
KQTLGI"
misc_feature 292690..293355
/locus_tag="Rmag_0268"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 292696..293358
/locus_tag="Rmag_0268"
/note="DnaA regulatory inactivator Hda; Region:
DnaA_homol_Hda; TIGR03420"
/db_xref="CDD:163254"
misc_feature 292828..292851
/locus_tag="Rmag_0268"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(292831..292854,292978..292980,293077..293079)
/locus_tag="Rmag_0268"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 292969..292983
/locus_tag="Rmag_0268"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 293119..293121
/locus_tag="Rmag_0268"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene complement(293361..293768)
/locus_tag="Rmag_0269"
/db_xref="GeneID:4555164"
CDS complement(293361..293768)
/locus_tag="Rmag_0269"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903522.1"
/db_xref="GI:118602307"
/db_xref="InterPro:IPR003439"
/db_xref="GeneID:4555164"
/translation="MPNKHYTCPFSNLILSGRCGCKFDAKDCIAEKEFGVCLDGSSSK
KCQSLYAHLHDNSNFVLNTHHQNNLSVGQQSKIKMGGLLALQEILNTENSNKIEDISN
LVKIVEEKYMDFKNIPFSKLMPRIAQFKFRKKP"
gene 293865..295283
/locus_tag="Rmag_0270"
/db_xref="GeneID:4555165"
CDS 293865..295283
/locus_tag="Rmag_0270"
/EC_number="1.3.1.76"
/EC_number="2.1.1.107"
/note="TIGRFAM: uroporphyrin-III C-methyltransferase;
siroheme synthase;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase;
KEGG: mfa:Mfla_0652 uroporphyrin-III C-methyltransferase"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen-III C-methyltransferase /
precorrin-2 dehydrogenase"
/protein_id="YP_903523.1"
/db_xref="GI:118602308"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR003043"
/db_xref="InterPro:IPR006366"
/db_xref="InterPro:IPR006367"
/db_xref="GeneID:4555165"
/translation="MNYLPIFIDIKQKPCLVVGGGDIAYRKINFLLKAHGQVTCIAKS
SCKNVVKLASDNKIIYFEKSFEASDIKEQVLIVSATDNTSLNKQVSELSNQNNIPVNV
VDSPDLCTFIMPSIVDRSPIVIAISSAGKAPVLARLIRAKLESTLPHAYGKLAELAGN
FRDKVKEKFSNIEDRRYFWEKTFSGIIAEKVFSGKIQEAKADLQVQLDGSTKTQVGEV
YLVGGGPGDPDLLTFKALRLMQQADVVLYDRLVSNGVMGLVRRDAQLIYVGKERDNHV
VPQGDINQLLVNLAKQGRRVCRLKGGDPFIFGRGGEEIETLAENGISFQVVPGITAAS
GCSTYSGIPLTHRDYSQSCRFVTGHLKDGSMNLPWHELSVEQQTIVFYMALNGARHLS
EQLITHGMSPDMPVALVEKGTTPEQKVYTTTLKKLPDLVKNEIIHAPTLIIIGEVVTL
REKLNWFDAKLASSKKSYLFGG"
misc_feature 293865..295235
/locus_tag="Rmag_0270"
/note="siroheme synthase; Provisional; Region: cysG;
PRK10637"
/db_xref="CDD:182606"
misc_feature 293880..294209
/locus_tag="Rmag_0270"
/note="Putative NAD(P)-binding; Region: NAD_binding_7;
pfam13241"
/db_xref="CDD:205421"
misc_feature 294309..294488
/locus_tag="Rmag_0270"
/note="Sirohaem synthase dimerisation region; Region:
CysG_dimeriser; pfam10414"
/db_xref="CDD:204480"
misc_feature 294513..295208
/locus_tag="Rmag_0270"
/note="Uroporphyrin-III C-methyltransferase
(S-Adenosyl-L-methionine:uroporphyrinogen III
methyltransferase, SUMT); Region: SUMT; cd11642"
/db_xref="CDD:212501"
misc_feature order(294537..294539,294606..294614,294765..294773,
294780..294791,294855..294860,294870..294872,
294933..294935,294939..294941,295005..295019,
295089..295091,295095..295100,295104..295106,
295176..295187)
/locus_tag="Rmag_0270"
/note="active site"
/db_xref="CDD:212501"
misc_feature order(294537..294539,294765..294773,294780..294785,
294855..294860,295008..295010,295089..295091,
295095..295100,295179..295187)
/locus_tag="Rmag_0270"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212501"
misc_feature order(294549..294566,294570..294572,294771..294773,
294777..294785,294795..294800,294804..294806,
294816..294821,294840..294842,294846..294848,
294852..294854,294864..294869,294891..294893,
294897..294905,294915..294929)
/locus_tag="Rmag_0270"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212501"
gene 295585..295671
/locus_tag="Rmag_R0010"
/note="tRNA-Leu1"
/db_xref="GeneID:4555583"
tRNA 295585..295671
/locus_tag="Rmag_R0010"
/product="tRNA-Leu"
/db_xref="GeneID:4555583"
gene 295688..296497
/locus_tag="Rmag_0271"
/db_xref="GeneID:4555166"
CDS 295688..296497
/locus_tag="Rmag_0271"
/EC_number="3.1.3.3"
/note="KEGG: tcx:Tcr_1620 phosphoserine phosphatase SerB;
TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily
hydrolase, subfamily IB (PSPase-like);
PFAM: Haloacid dehalogenase domain protein hydrolase"
/codon_start=1
/transl_table=11
/product="phosphoserine phosphatase"
/protein_id="YP_903524.1"
/db_xref="GI:118602309"
/db_xref="InterPro:IPR004469"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006383"
/db_xref="GeneID:4555166"
/translation="MSVQITIQHSLDENIAKQISSKFQVFDTHIRHQMTSINLDDLRQ
QHQTDFNHLPEVDFSNIKLFVSDMDSTLINIECIDEISDFANIKPQVAAITELAMQGK
LDFDDSLIERVSLLKGLSIDVLDKVYTQRLEINPGGRTLISFFKTKSIQTAVVSGSFT
YFTNRLAQDLALDYACANVLTIENNQLTGVTEGLMINAQAKADFVKELCDKQSLSYSQ
VIVVGDGANDLSMMRIAGVSVAYHAKPNIMKHANIVINFGRLNKIMDLFNP"
misc_feature 295859..296485
/locus_tag="Rmag_0271"
/note="phosphoserine phosphatase SerB; Region: serB;
TIGR00338"
/db_xref="CDD:161826"
misc_feature 296060..296398
/locus_tag="Rmag_0271"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 296153..296155
/locus_tag="Rmag_0271"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 296552..298456
/locus_tag="Rmag_0272"
/db_xref="GeneID:4555167"
CDS 296552..298456
/locus_tag="Rmag_0272"
/note="TIGRFAM: cytochrome c-type biogenesis protein CcmF;
PFAM: cytochrome c assembly protein;
KEGG: psp:PSPPH_3309 cytochrome c-type biogenesis protein
CcmF"
/codon_start=1
/transl_table=11
/product="cytochrome c-type biogenesis protein CcmF"
/protein_id="YP_903525.1"
/db_xref="GI:118602310"
/db_xref="InterPro:IPR002541"
/db_xref="InterPro:IPR003567"
/db_xref="InterPro:IPR003568"
/db_xref="InterPro:IPR003570"
/db_xref="GeneID:4555167"
/translation="MLIEIGHFALVLAFVFAVLQVVLPTIGIIKHDTILSGLSRPLLW
MQFFWILIAFAILMNAFLVDDFSVKYVANNSNTQLPNIFKMSAVWGAHEGSLLLWALI
LTAWSVAVSIFSRRLPDEVLNHILIILGLISIGFLLFLLLTSNPFERLDMVPIQGREL
NPLLQDFGLIIHPPMLYMGYVGMAVPFAFVLSSLIRGQLDSTWLRWSRPWTLIAWAFL
TFGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVATALVHSLSVSEKRGVFKHWTV
LLAISGFSLSLLGTFLVRSGILTSVHSFAADPARGLFILIFLVIVVGGSLVLYAWRAS
LMQSNNTFSFLSRESGLLVNNVLLVAAMSSVFLGTLYPLLLDALGLGKISVGAPYFSA
VFVPIMILALLVMVIAPFLRWKKDTTQRVAGLLKWVWIGVGLLFVISALLTDNTSVLL
AVFLFIWIVMHSLVLLFQRLNQKGSMSFAFIGMIFAHIGIAVFLLGATVTTQYGVEKD
IKMDIDKPITIAGYDFIFKGVTHLFGQNYQGNKGHVEVYFENEKISDLRPEKRQYVTG
MPMTEAAIDPSLYRDIYIVLGESLENDSWSLRIYYKPLIRWIWLGGLLITLGALLAAF
DRRYRLRVKE"
misc_feature 296708..298438
/locus_tag="Rmag_0272"
/note="Cytochrome C assembly protein; Region:
Cytochrom_C_asm; cl00504"
/db_xref="CDD:212230"
gene 298453..299604
/locus_tag="Rmag_0273"
/db_xref="GeneID:4555168"
CDS 298453..299604
/locus_tag="Rmag_0273"
/note="PFAM: TPR repeat-containing protein;
Tetratricopeptide TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein;
KEGG: dar:Daro_1405 TPR repeat"
/codon_start=1
/transl_table=11
/product="TPR repeat-containing protein"
/protein_id="YP_903526.1"
/db_xref="GI:118602311"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:4555168"
/translation="MNLYLWFILMIITSSIWIIWFLYRPLKSNEINLESSNIILGKQK
LLELEQDLHQNLIDKKQFNQAKEEISTTLAIELQQVSNIENNANNNTWVLILILVLLP
IMSIGVYQYLILGNNMSAEKPLSLEQSADKIVQYLQTNDNDAQAWKMLGLMYFEIGKL
DLSIDAYEKSYKINPKDPGLLVEYASMMISVNDNQFSDQSVKLIKQALDIEPNASDAL
YLAGMFAASQLNFNLAKGLWQRALNALPEGSMDRVALVSILSELKTVEESKDTPEYSI
SVSVDISNEILKSRSSEDFIMIYVKAAKGRPMPIAIKKMKLKDFTGQVVLTNQDSVIR
GNQLSYHEQVIAVVRISETGSAMRGVGDVQVLSKVINMVDNLSIHLSVK"
misc_feature <298522..298800
/locus_tag="Rmag_0273"
/note="cytochrome c-type biogenesis protein CcmI; Region:
cytochro_ccmI; TIGR03142"
/db_xref="CDD:163153"
misc_feature 298876..299088
/locus_tag="Rmag_0273"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 298885..299193
/locus_tag="Rmag_0273"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(298885..298890,298894..298899,298906..298911,
298996..299001,299005..299010,299017..299022,
299107..299112,299119..299124,299131..299136)
/locus_tag="Rmag_0273"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(298903..298905,298939..298941,298951..298953,
298960..298962,299005..299007,299050..299052,
299062..299064,299071..299073,299116..299118,
299152..299154,299164..299166,299173..299175)
/locus_tag="Rmag_0273"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene 299609..300739
/locus_tag="Rmag_0274"
/db_xref="GeneID:4555169"
CDS 299609..300739
/locus_tag="Rmag_0274"
/EC_number="3.5.1.18"
/note="dapE-encoded N-succinyl-L,L-diaminopimelic acid
desuccinylase (DapE), catalyzes the hydrolysis of
N-succinyl-L,Ldiaminopimelate L,L-SDAP to
L,L-diaminopimelate and succinate. It is a metalloprotease
containing dinuclear active sites. Its structure is
similar to the carboxypeptidase G2 from Pseudomonas sp.
strain RS-16 and the aminopeptidase from Aeromonas
proteolytica."
/codon_start=1
/transl_table=11
/product="succinyl-diaminopimelate desuccinylase"
/protein_id="YP_903527.1"
/db_xref="GI:118602312"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR005941"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:4555169"
/translation="MNKTLKLAKNLVSIDSITPQDKGCQSIMTNHLSHLNFKITDLKF
GEVDNFWAIRGHQSPVFVFAGHTDVVPVGDELKWHISPFSAQVQDGMLHGRGTADMKG
SLAAMLSATDRFVKDYPNHKGSIGYLITSDEEGPATDGTVKVAKYLKEINQIVDYCLV
GEPSATNELGDVIKNGRRGSLNGILKIIGKQGHIAYPHLADNPIHLAISALNDLCNEV
WDKGNEYFPATSFQISNIHSGTGVTNIIPGESDVVLNFRYSTQNTHKQLQSRVCVILN
KHNFEYQITWEHSGYPFLTPKGKLVNACTNAIKTVKNINTQLSTSGGTSDGRFIALIL
KAQVVELGPLNATIHQVDECVSIQDLEDLSDIYYHVLKNILT"
misc_feature 299609..300736
/locus_tag="Rmag_0274"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK13009"
/db_xref="CDD:183838"
misc_feature 299621..300721
/locus_tag="Rmag_0274"
/note="M20 Peptidase proteobacterial DapE encoded
N-succinyl-L,L-diaminopimelic acid desuccinylase; Region:
M20_DapE_proteobac; cd03891"
/db_xref="CDD:193511"
misc_feature order(299804..299806,299903..299905,300005..300010,
300092..300094,300653..300655)
/locus_tag="Rmag_0274"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193511"
misc_feature order(300152..300154,300185..300196,300212..300214,
300218..300223,300230..300235,300239..300244,
300251..300253,300296..300298,300302..300325,
300344..300349,300371..300373,300377..300379,
300572..300574)
/locus_tag="Rmag_0274"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193511"
gene 300743..301417
/locus_tag="Rmag_0275"
/db_xref="GeneID:4555170"
CDS 300743..301417
/locus_tag="Rmag_0275"
/EC_number="2.1.1.31"
/note="KEGG: vvy:VV2786
tRNA-(guanine-N1)-methyltransferase;
TIGRFAM: tRNA (guanine-N1)-methyltransferase;
PFAM: tRNA (guanine-N1-)-methyltransferase"
/codon_start=1
/transl_table=11
/product="tRNA (Guanine37-N1) methyltransferase"
/protein_id="YP_903528.1"
/db_xref="GI:118602313"
/db_xref="InterPro:IPR002649"
/db_xref="InterPro:IPR003439"
/db_xref="GeneID:4555170"
/translation="MRFDVITLFPDMFNTIKDEGVIARAIKKSCLLIHTWQLRDFSNN
KYKNIDDKPYGGGAGMVMKVKPIRDCIHKIKQSNPKTKVIYLSPQGQPLKHKLAKELS
TFDSITLLCGRYEGVDERIIKHDIDMEISIGDYVISGGELAAMVLIDTISRQIPNVLG
NADSLNDSFAKNLLDYPHYTRPEIIDKQAVPEVLLSGHQANIDTWRVEQSIKKTQEKR
KDLLED"
misc_feature 300743..301414
/locus_tag="Rmag_0275"
/note="tRNA (guanine-N(1)-)-methyltransferase; Reviewed;
Region: trmD; PRK00026"
/db_xref="CDD:178803"
gene 301598..301936
/locus_tag="Rmag_0276"
/db_xref="GeneID:4555171"
CDS 301598..301936
/locus_tag="Rmag_0276"
/note="PFAM: nitrogen regulatory protein P-II;
KEGG: mca:MCA2137 nitrogen regulatory protein P-II"
/codon_start=1
/transl_table=11
/product="nitrogen regulatory protein P-II"
/protein_id="YP_903529.1"
/db_xref="GI:118602314"
/db_xref="InterPro:IPR002187"
/db_xref="InterPro:IPR002332"
/db_xref="GeneID:4555171"
/translation="MKFVTAILRPHKLDDVREALSEVGVSGVTVTEVKGFGRQKGHTE
LYRGAEYQIDFLPKIKLEVAIEASRLDEVIEVISNVANSGKVGDGKIFVTNLDKVVRI
RTGETDKNAL"
misc_feature 301607..301912
/locus_tag="Rmag_0276"
/note="Nitrogen regulatory protein P-II; Region: P-II;
pfam00543"
/db_xref="CDD:201295"
misc_feature 301607..301912
/locus_tag="Rmag_0276"
/note="Nitrogen regulatory protein P-II; Region: P-II;
smart00938"
/db_xref="CDD:198006"
gene 301983..303221
/locus_tag="Rmag_0277"
/db_xref="GeneID:4555172"
CDS 301983..303221
/locus_tag="Rmag_0277"
/note="TIGRFAM: ammonium transporter;
PFAM: Rh family protein/ammonium transporter;
KEGG: cps:CPS_3995 ammonium transporter"
/codon_start=1
/transl_table=11
/product="ammonium transporter"
/protein_id="YP_903530.1"
/db_xref="GI:118602315"
/db_xref="InterPro:IPR001905"
/db_xref="InterPro:IPR010256"
/db_xref="GeneID:4555172"
/translation="MGVFAQDINGADTAWIMTSTALVLFMTLPGLALFYGGLVRTKNI
LSILMQCFAIAGIISILWFVVGYSIAFSGDNPYFGDFSNVLLVQISINTVNGSIPESL
FAVFQMTFAIITPALIIGSYAERMKFSAVLLFSSIWLLVVYAPVTHWVWGGGWLGNVL
DYAGGTVVHITAGIAALVAAIVLGPRKDFFKKPMPPHNMTMTITGAAMLWVGWFGFNG
GSALVAGGDAAMAILVTHISAATGAITWMFYEWIKFGKPTALGTVTGMVAGLGTITSA
SGFVGPTGALVIGFISGIVCFNAVIIIKQKFKIDDSLDVFPVHGVGGIIGTLMTGFFA
SKELGIFSGQGGWDRKAIVIADQLQIQFIGVVATVIYTAVVTYLILKVVDAITGLRVS
EEEEQQGLDIVSHEEKGYDL"
misc_feature 302004..303218
/locus_tag="Rmag_0277"
/note="Ammonia permease [Inorganic ion transport and
metabolism]; Region: AmtB; COG0004"
/db_xref="CDD:30353"
gene 303496..304386
/locus_tag="Rmag_0278"
/db_xref="GeneID:4555173"
CDS 303496..304386
/locus_tag="Rmag_0278"
/EC_number="4.2.1.52"
/note="catalyzes the formation of dihydrodipicolinate from
L-aspartate 4-semialdehyde and pyruvate in lysine and
diaminopimelate biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate synthase"
/protein_id="YP_903531.1"
/db_xref="GI:118602316"
/db_xref="InterPro:IPR002220"
/db_xref="InterPro:IPR003009"
/db_xref="InterPro:IPR005263"
/db_xref="GeneID:4555173"
/translation="MRINHPLTGSIVALITPMFDDGSIDFGVLKSLVAFHIDSGTKAI
VSMGTTGESATLNQDEHIEVIRATIEFANSRIPIIASTGANSTSEAIELTKAAKVIGA
DACLLVTPYYNRPTQEGLYQHYKLIAETVDIDQILYNVPSRTAVDLCVETVLRLSNID
NIIGIKDATGDLNVAKALIEQCADDFLFYSGDDATAVEFILMGGHGGISVTANITPKQ
VASAYQFALENDRELAESTNAPLADLHQHLFIESNPIPIKWAMFKMGKCNNGIRLPLM
ILSQQAQAMLEQDLSNLGII"
misc_feature 303514..304365
/locus_tag="Rmag_0278"
/note="Dihydrodipicolinate synthase (DHDPS); Region:
DHDPS; cd00950"
/db_xref="CDD:188637"
misc_feature 303520..304374
/locus_tag="Rmag_0278"
/note="dihydrodipicolinate synthase; Region: dapA;
TIGR00674"
/db_xref="CDD:129757"
misc_feature order(303637..303651,303748..303750,303754..303756,
303823..303831,303916..303918,303922..303924,
304252..304257,304309..304311,304315..304317)
/locus_tag="Rmag_0278"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188637"
misc_feature order(303640..303645,303907..303909,303922..303924,
303991..303993,304066..304068,304072..304074)
/locus_tag="Rmag_0278"
/note="active site"
/db_xref="CDD:188637"
misc_feature 303991..303993
/locus_tag="Rmag_0278"
/note="catalytic residue [active]"
/db_xref="CDD:188637"
gene 304389..305504
/locus_tag="Rmag_0279"
/db_xref="GeneID:4555174"
CDS 304389..305504
/locus_tag="Rmag_0279"
/note="KEGG: dar:Daro_0847 NlpBDapX lipoprotein"
/codon_start=1
/transl_table=11
/product="NlpBDapX lipoprotein"
/protein_id="YP_903532.1"
/db_xref="GI:118602317"
/db_xref="GeneID:4555174"
/translation="MIIRKLTILLLVFSLGGCISLGSKEKQKQDGLGERDIKYYSNKT
LTSLEVPPDLTKPSTQNALKLSEYVANIQEDLISFSEKDRAIKDASSIEVKKSGSLRW
LVVDKKPDAVWGLAKSFFKSHGFIIKKANKKIGVMETNFLENHPEIPDQSLGLIRSMF
RKVTKTRYTLPIVDKYRLRIESTDNGNKTEVYLSLTSMQEVLTNKSSDDENTIWQSQV
KDHTLETEMLYRLMTFLGSDHALARKKIIAAREQKKLTVKVAKSISGYAKLMFSLTQY
ETWNNIGWALDQLGIDVEDKDVKEGSFYINFVKKEDKGIFSGLFGDDAIKKYFQIVVR
QVASNITEVYFNDLSGDNKQVTIDFSYQFLGNIAKQF"
sig_peptide 304389..304460
/locus_tag="Rmag_0279"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.975) with cleavage site probability 0.573 at
residue 24"
misc_feature 304395..305309
/locus_tag="Rmag_0279"
/note="Uncharacterized lipoprotein [Cell envelope
biogenesis, outer membrane]; Region: NlpB; COG3317"
/db_xref="CDD:33126"
gene 305567..307411
/locus_tag="Rmag_0280"
/db_xref="GeneID:4555175"
CDS 305567..307411
/locus_tag="Rmag_0280"
/EC_number="6.5.1.2"
/note="PFAM: NAD-dependent DNA ligase; NAD-dependent DNA
ligase, OB-fold;
KEGG: dps:DP1006 related to NAD-dependent DNA ligase"
/codon_start=1
/transl_table=11
/product="DNA ligase (NAD(+))"
/protein_id="YP_903533.1"
/db_xref="GI:118602318"
/db_xref="InterPro:IPR001679"
/db_xref="InterPro:IPR004150"
/db_xref="GeneID:4555175"
/translation="MDELSDEELAQFCQIANLAYRAGKPIISDQDYDFIYLDALKNRD
PDNLLFKFIETEGQSFSEEKVLLPEAMLSIDKAYSWDEISKWIKRLEKSAMQISLDLS
AIQIKATPKLDGFSGFDDGSRLYTRGDGKKGSDISRVFERGLCVFNDAERGLGAGEIV
IKKSYFKKYLAHSFEYPRNFQASLIKEKALDEQAQKAIIDKAALFIPFIKLPTWSGLV
AELVAKFDQIVAQVLVMVDFDVDGVVFEAINTDLKTQMGANRKFHRWQIAFKENKDKA
HVKVLNVIPQVGRSGKITPVVELEPTLLSGATIMRATGHNYGLVKEQGLGVGSVVELT
RSGLVIPKIIFVLKPMPVDIPDNCPSCDKPLVWKSDFLTCINHKNCPAQIIGKMAYFF
KILANNDGFGIATIEKLYAHDIRSVSQIYALNIEDLVTIGFGEKTSMNLINQLNRSVS
EQVEDWRFLAAFGMHRMGLGNCENLLKSHHLNDIFDLNLKEIANIDGFAELTGQIIVQ
GLISIADEFNHIYQYGFNLETTILTKDLQTLTHELFDKKIVFTGKMNHSRDDMKKHAK
SIGIKVSTSISAKIDYLVIGDKVGQKKIKDAEKFGVVVMTETDYLSKI"
misc_feature 305585..306376
/locus_tag="Rmag_0280"
/note="NAD+ dependent DNA ligase adenylation domain. DNA
ligases catalyze the crucial step of joining the breaks in
duplex DNA during DNA replication, repair and
recombination, utilizing either ATP or NAD(+) as a
cofactor, but using the same basic reaction...; Region:
LIGANc; cl03295"
/db_xref="CDD:207906"
misc_feature 305639..307387
/locus_tag="Rmag_0280"
/note="DNA ligase, NAD-dependent; Region: dnlj; TIGR00575"
/db_xref="CDD:161936"
misc_feature order(305786..305788,305891..305893,305897..305899,
305945..305947,306038..306040,306296..306298,
306302..306304)
/locus_tag="Rmag_0280"
/note="nucleotide binding pocket [chemical binding]; other
site"
/db_xref="CDD:29013"
misc_feature order(305897..305899,305903..305908)
/locus_tag="Rmag_0280"
/note="K-X-D-G motif; other site"
/db_xref="CDD:29013"
misc_feature 305897..305899
/locus_tag="Rmag_0280"
/note="catalytic site [active]"
/db_xref="CDD:29013"
misc_feature 306392..306610
/locus_tag="Rmag_0280"
/note="NAD-dependent DNA ligase OB-fold domain; Region:
DNA_ligase_OB; pfam03120"
/db_xref="CDD:145978"
misc_feature 307199..307390
/locus_tag="Rmag_0280"
/note="Breast Cancer Suppressor Protein (BRCA1),
carboxy-terminal domain. The BRCT domain is found within
many DNA damage repair and cell cycle checkpoint proteins.
The unique diversity of this domain superfamily allows
BRCT modules to interact forming homo...; Region: BRCT;
cd00027"
/db_xref="CDD:28909"
misc_feature order(307241..307243,307253..307255,307262..307264,
307271..307273,307277..307279)
/locus_tag="Rmag_0280"
/note="Dimer interface [polypeptide binding]; other site"
/db_xref="CDD:28909"
gene 307708..308055
/locus_tag="Rmag_0281"
/db_xref="GeneID:4555176"
CDS 307708..308055
/locus_tag="Rmag_0281"
/note="PFAM: nitrogen regulatory protein P-II;
KEGG: sde:Sde_0232 nitrogen regulatory protein P-II (GlnB,
GlnK)"
/codon_start=1
/transl_table=11
/product="nitrogen regulatory protein P-II"
/protein_id="YP_903534.1"
/db_xref="GI:118602319"
/db_xref="InterPro:IPR002187"
/db_xref="InterPro:IPR002332"
/db_xref="GeneID:4555176"
/translation="MKMIIAIIKPFKLDNVIEALSDIGVSGITATEVKGFGRQKGHTE
LYRGAEYTVDFLPKVKLEIAIAANQVDGVVEIIRVAAKSEGEGKIGDGKIFVSSLDQV
FRIRTGEIGSVAL"
misc_feature 307717..308031
/locus_tag="Rmag_0281"
/note="Nitrogen regulatory protein P-II; Region: P-II;
pfam00543"
/db_xref="CDD:201295"
misc_feature 307717..308031
/locus_tag="Rmag_0281"
/note="Nitrogen regulatory protein P-II; Region: P-II;
smart00938"
/db_xref="CDD:198006"
gene 308229..308832
/locus_tag="Rmag_0282"
/pseudo
/db_xref="GeneID:4555483"
gene 309194..309634
/locus_tag="Rmag_0283"
/db_xref="GeneID:4555401"
CDS 309194..309634
/locus_tag="Rmag_0283"
/note="PFAM: CBS domain containing protein;
KEGG: bxe:Bxe_A1873 hypothetical protein"
/codon_start=1
/transl_table=11
/product="signal-transduction protein"
/protein_id="YP_903535.1"
/db_xref="GI:118602320"
/db_xref="InterPro:IPR000644"
/db_xref="GeneID:4555401"
/translation="MQVQDIMSTNVKTVTPDQLAKDIAIIMVMDHISGAPVVDDDNNL
VGIISEKDILQHMFPKLDEVMSDTYFDFENMEHNYKNTMNVKVGELMTKDVASIDLSM
PCLKAASTMWLRNIRRIPVTHNNKLVGIVSIGDVHRAIFKSRIK"
misc_feature 309200..309601
/locus_tag="Rmag_0283"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:30863"
misc_feature 309215..309610
/locus_tag="Rmag_0283"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the BON (bacterial OsmY and nodulation domain)
domain. BON is a putative phospholipid-binding domain
found in a family of osmotic shock protection...; Region:
CBS_pair_BON_assoc; cd04586"
/db_xref="CDD:73086"
gene 309685..310209
/locus_tag="Rmag_0284"
/db_xref="GeneID:4555402"
CDS 309685..310209
/locus_tag="Rmag_0284"
/note="PFAM: ANTAR domain protein;
KEGG: mca:MCA0588 response regulator NasT"
/codon_start=1
/transl_table=11
/product="response regulator receiver/ANTAR
domain-containing protein"
/protein_id="YP_903536.1"
/db_xref="GI:118602321"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR005561"
/db_xref="GeneID:4555402"
/translation="MLRKALQDKGHEVVCCMSDSSNLQDSNEMTYADMVIVNADIPDE
LVFANLTDINKTKPIVMFTEESNPGMASSAIKSGVHAYIVDGLEENRVQPIIDVAIAR
FREFQALKDELDATRNQLSERKAVEKAKGLLMQHKDVNEDEAYQSLRKMAMNKNKRIV
DVAESVINAFELLE"
misc_feature 309685..309984
/locus_tag="Rmag_0284"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cl09944"
/db_xref="CDD:209106"
misc_feature order(309796..309798,309820..309822,309871..309873,
309928..309930,309937..309942)
/locus_tag="Rmag_0284"
/note="active site"
/db_xref="CDD:29071"
misc_feature 309796..309798
/locus_tag="Rmag_0284"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(309805..309810,309814..309822)
/locus_tag="Rmag_0284"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 309937..309945
/locus_tag="Rmag_0284"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 310018..310185
/locus_tag="Rmag_0284"
/note="ANTAR domain; Region: ANTAR; pfam03861"
/db_xref="CDD:202788"
gene complement(310215..311081)
/locus_tag="Rmag_0285"
/db_xref="GeneID:4555403"
CDS complement(310215..311081)
/locus_tag="Rmag_0285"
/note="TIGRFAM: Sec-independent protein translocase, TatC
subunit;
PFAM: Sec-independent periplasmic protein translocase;
KEGG: tcx:Tcr_1974 sec-independent protein translocase
TatC"
/codon_start=1
/transl_table=11
/product="Sec-independent protein translocase, TatC
subunit"
/protein_id="YP_903537.1"
/db_xref="GI:118602322"
/db_xref="InterPro:IPR002033"
/db_xref="GeneID:4555403"
/translation="MTNKEMTFVQHLVELRNILLHSIIAILIIFIGIFPFANEIYSFI
AAPIINVLPENTNIIAINVISPFLTPLKMSLIIAVYVAMPYLLYQIWSFVAPALYKHE
KQMILPLVVSSTILFYTGLLFSFYIVFPVIFGFLSSVAPNIVDLTPDIQYYLDFVLKV
SFAFGVAFEVPIATILLIMFGITTVDKLKSNRPYAIIGAFILGMLLTPPDIISQTLIA
IPMWLLFETGLIFAPLFKQNKQKISDKPPPNSSKKFSKKEKNSDNNDWNDNEMEAEMK
KIDTEMKKLDKE"
misc_feature complement(310386..311057)
/locus_tag="Rmag_0285"
/note="Sec-independent protein translocase protein (TatC);
Region: TatC; cl00521"
/db_xref="CDD:212233"
gene complement(311081..311362)
/locus_tag="Rmag_0286"
/db_xref="GeneID:4555404"
CDS complement(311081..311362)
/locus_tag="Rmag_0286"
/note="TIGRFAM: twin-arginine translocation protein, TatB
subunit;
PFAM: sec-independent translocation protein mttA/Hcf106;
KEGG: neu:NE0638 mttA/Hcf106 family"
/codon_start=1
/transl_table=11
/product="twin-arginine translocation protein, TatB
subunit"
/protein_id="YP_903538.1"
/db_xref="GI:118602323"
/db_xref="InterPro:IPR003369"
/db_xref="InterPro:IPR003998"
/db_xref="GeneID:4555404"
/translation="MFDVGFWEFALIGIIALIIVGPKRMPAIARKAGTYVGKAKRFIA
NIQEDISDELEIDKLKEHLSTVDKKPNILEIFDDTKNTFNDVKNNTDQK"
misc_feature complement(<311162..311362)
/locus_tag="Rmag_0286"
/note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788"
/db_xref="CDD:213101"
gene complement(311374..311577)
/locus_tag="Rmag_0287"
/db_xref="GeneID:4555405"
CDS complement(311374..311577)
/locus_tag="Rmag_0287"
/note="TIGRFAM: twin-arginine translocation protein,
TatA/E family subunit;
PFAM: sec-independent translocation protein mttA/Hcf106;
KEGG: ilo:IL2370 sec-independent protein secretion pathway
component, TatA family"
/codon_start=1
/transl_table=11
/product="twin arginine-targeting protein translocase"
/protein_id="YP_903539.1"
/db_xref="GI:118602324"
/db_xref="InterPro:IPR003369"
/db_xref="InterPro:IPR006312"
/db_xref="GeneID:4555405"
/translation="MMPGPFELIVILVIVLLLFGGKRLKNVGSDLGNAIKGFKKSMQK
EPADQINTKDNIVEAKTTKESTK"
misc_feature complement(311383..>311523)
/locus_tag="Rmag_0287"
/note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788"
/db_xref="CDD:213101"
gene complement(311594..311911)
/gene="hisE"
/locus_tag="Rmag_0288"
/db_xref="GeneID:4555406"
CDS complement(311594..311911)
/gene="hisE"
/locus_tag="Rmag_0288"
/EC_number="3.6.1.31"
/note="catalyzes the formation of 1-(5-phosphoribosyl)-AMP
from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosyl-ATP pyrophosphatase"
/protein_id="YP_903540.1"
/db_xref="GI:118602325"
/db_xref="InterPro:IPR008179"
/db_xref="GeneID:4555406"
/translation="MNDILIKLEQVLEQRKSAKVDESYISSLYNKGTDEILKKIAEES
AEVIMAAKDGVNDKIIYEVADLWFHTLVLLRFKEIKVNQITNELSRRFGLSGLQEKAK
RNN"
misc_feature complement(311648..311899)
/gene="hisE"
/locus_tag="Rmag_0288"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain found in Escherichia coli
phosphoribosyl-ATP pyrophosphohydrolase (HisIE or
PRATP-PH) and its homologs; Region: NTP-PPase_HisIE_like;
cd11534"
/db_xref="CDD:212141"
misc_feature complement(order(311717..311719,311726..311728,
311774..311776,311783..311785))
/gene="hisE"
/locus_tag="Rmag_0288"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212141"
gene complement(311904..312284)
/gene="hisI"
/locus_tag="Rmag_0289"
/db_xref="GeneID:4555407"
CDS complement(311904..312284)
/gene="hisI"
/locus_tag="Rmag_0289"
/EC_number="3.5.4.19"
/note="PR-AMP cyclohydrolase; functions in histidine
biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP
to
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]imidazole-4-
carboxyamide during the histidine biosynthesis pathway;
binds zinc and magnesium; forms homodimers"
/codon_start=1
/transl_table=11
/product="phosphoribosyl-AMP cyclohydrolase"
/protein_id="YP_903541.1"
/db_xref="GI:118602326"
/db_xref="InterPro:IPR002496"
/db_xref="GeneID:4555407"
/translation="MDALKQTKFDDKNLIPAIVQDFKTGDILMFAWMNQESLALTIEK
QQAVYYSRSRKKLWFKGEQSGHTQLIKEIFTDCDNDVILLRVDQVGGIACHTGRKSCF
FQQLDKNNWKTVANVLKNPKDIYE"
misc_feature complement(311907..312284)
/gene="hisI"
/locus_tag="Rmag_0289"
/note="phosphoribosyl-AMP cyclohydrolase; Reviewed;
Region: hisI; PRK00051"
/db_xref="CDD:178825"
gene complement(312610..313941)
/locus_tag="Rmag_0290"
/db_xref="GeneID:4555408"
CDS complement(312610..313941)
/locus_tag="Rmag_0290"
/EC_number="1.8.1.7"
/note="PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase; pyridine nucleotide-disulphide
oxidoreductase dimerisation region;
KEGG: tcx:Tcr_0140 glutathione reductase"
/codon_start=1
/transl_table=11
/product="NADPH-glutathione reductase"
/protein_id="YP_903542.1"
/db_xref="GI:118602327"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000815"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR004099"
/db_xref="InterPro:IPR012999"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4555408"
/translation="MNTDYDMIAIGAGSGGLSAVERAAEYGRKCLIIEVKIIGGTCVN
VGCVPKKVMWFAANTGSIIKNAKGFGFEVEQKGFSWKKLKVGRDNYIKSITNWYDSYL
QKLGIDYIHGFGQLVDKNIVSVNGKEYTAEYIILSSGEEPAVPHIEGSEYGITSDNFF
ALEALPKKVAVIGGGYIGVELAGVLNALGSEVTLFCRADKLLRGFDSMIQNTLDKDYS
SHGITIHHNTQIDKVSKNKTLFTNQGAFTGFDTIIWAVGRNPMTQHLGLKVAGVKCDQ
KGFIQTDKFQTTNVDNIFALGDVTGRTSLTPVAIAAGRRLSDRLYNNMTDRHLDYNNI
ATVVFSHPPIGMVGLTEAQANEKFDKIKIYKSEFTPMADALLEHKTTTALKLVCAGDN
EKVIGCHIMGHGADEILQGFAMAIKMGVTKKQFDDTIAIHPTISEELVTMR"
misc_feature complement(312613..313941)
/locus_tag="Rmag_0290"
/note="glutathione reductase; Validated; Region: PRK06116"
/db_xref="CDD:180410"
misc_feature complement(313228..313440)
/locus_tag="Rmag_0290"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(312613..312942)
/locus_tag="Rmag_0290"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene 315165..315368
/locus_tag="Rmag_0291"
/pseudo
/db_xref="GeneID:4555484"
gene complement(315374..316468)
/locus_tag="Rmag_0292"
/db_xref="GeneID:4555409"
CDS complement(315374..316468)
/locus_tag="Rmag_0292"
/note="TIGRFAM: peptide chain release factor 2;
PFAM: Class I peptide chain release factor; PCRF domain
protein;
KEGG: mca:MCA0302 peptide chain release factor 2,
programmed frameshift"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_903543.1"
/db_xref="GI:118602328"
/db_xref="InterPro:IPR000352"
/db_xref="InterPro:IPR004374"
/db_xref="InterPro:IPR005139"
/db_xref="GeneID:4555409"
/translation="MELSPTYQKIQDLKQRTIVLLTHISLEKKQARLEEVLLEMENPN
IWTNPDQAQVLGQEKSKLTSICQTFKQVNSVLEDAQELLNMAQTENDEDTANDIIDDL
DTIQSSIEKLEFERMFSGDLDVNSAYLDIQSGSGGTEAQDWAEMVLRMYLRWGEKHNF
KVKLMETSAGEVTGIKSATIHFDGKYAFGWLRTEIGIHRLVRKSPFNANGKRHTSFCS
VFVSPEVDNDIDIDINPLDLRVDTYRASGAGGQHVNKTESAVRITHLPTNIIVQCQDG
RSQRANKDQAMKQLKSKLYELEIQKRNAEKQSLEDKKSNIGWGHQIRSYVLDQSRIKD
LRTGVESTNTNDVLDGNLDQFIEASLKAWL"
misc_feature complement(315383..316447)
/locus_tag="Rmag_0292"
/note="peptide chain release factor 2; Validated; Region:
prfB; PRK00578"
/db_xref="CDD:179072"
misc_feature complement(315887..316228)
/locus_tag="Rmag_0292"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature complement(315461..315760)
/locus_tag="Rmag_0292"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene complement(316527..316787)
/gene="rpsO"
/locus_tag="Rmag_0293"
/db_xref="GeneID:4555410"
CDS complement(316527..316787)
/gene="rpsO"
/locus_tag="Rmag_0293"
/note="primary rRNA binding protein; helps nucleate
assembly of 30S; binds directly to the 16S rRNA and an
intersubunit bridge to the 23S rRNA; autoregulates
translation through interactions with the mRNA leader
sequence"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_903544.1"
/db_xref="GI:118602329"
/db_xref="InterPro:IPR000589"
/db_xref="InterPro:IPR005290"
/db_xref="GeneID:4555410"
/translation="MSIDTQAIIKKYQSKTGDTGSSNVQIALLTARIKHLTEHFKTHK
KDHHSRRGLLHLVSQRKKLLIYLKDANTASYSNLIIHLGLRK"
misc_feature complement(316539..316775)
/gene="rpsO"
/locus_tag="Rmag_0293"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:48353"
misc_feature complement(order(316590..316592,316602..316604,
316641..316646,316650..316655,316659..316661,
316671..316673,316680..316682,316692..316694,
316713..316715,316722..316724,316773..316775))
/gene="rpsO"
/locus_tag="Rmag_0293"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:48353"
misc_feature complement(order(316545..316547,316557..316559,
316677..316679,316686..316688,316695..316700,
316707..316709))
/gene="rpsO"
/locus_tag="Rmag_0293"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:48353"
misc_feature complement(order(316539..316544,316605..316607,
316617..316619))
/gene="rpsO"
/locus_tag="Rmag_0293"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:48353"
gene complement(316850..317746)
/locus_tag="Rmag_0294"
/db_xref="GeneID:4555411"
CDS complement(316850..317746)
/locus_tag="Rmag_0294"
/note="PFAM: lipid A biosynthesis acyltransferase;
KEGG: psb:Psyr_1614 lipid A biosynthesis acyltransferase"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis acyltransferase"
/protein_id="YP_903545.1"
/db_xref="GI:118602330"
/db_xref="InterPro:IPR004960"
/db_xref="GeneID:4555411"
/translation="MTKTKFYHPKFIPTWALIGLMKLTAKLPLKIQLMMGKIIGRGLY
PLLSRLRKIAFVNISKCFPNKNKVQVTRLVKQHFEALGIGLFEISNCFYLSDKKLKQR
YNIEGSEILQNALDKQQNIILLVGHFTTMMLTGRMLLQNFDFADVYRPQNNALFDNKM
QKIFTQHGSLMIKAKDTRALIRTLKSGLPIWYTHDQDLGTKISTFSPFFDIQTATIKA
TEKLARIDNTVVIPLSFTRQHTTYTLEFSPALVNYPNDKPQKNTRLTNQILQQQILKA
PEQYLWIHKRFKTRPNNEPSFY"
misc_feature complement(316880..317740)
/locus_tag="Rmag_0294"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature complement(316883..317449)
/locus_tag="Rmag_0294"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature complement(order(317153..317161,317294..317305,
317351..317353,317357..317359,317366..317368))
/locus_tag="Rmag_0294"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene 317787..319568
/locus_tag="Rmag_0295"
/db_xref="GeneID:4555412"
CDS 317787..319568
/locus_tag="Rmag_0295"
/note="KEGG: pfo:Pfl_5148 DNA primase;
TIGRFAM: DNA primase;
PFAM: zinc finger, CHC2-family protein; TOPRIM domain
protein; DNA primase catalytic core, N-terminal domain;
SMART: Toprim sub domain protein"
/codon_start=1
/transl_table=11
/product="DNA primase"
/protein_id="YP_903546.1"
/db_xref="GI:118602331"
/db_xref="InterPro:IPR002694"
/db_xref="InterPro:IPR006154"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR006295"
/db_xref="InterPro:IPR006647"
/db_xref="InterPro:IPR013264"
/db_xref="GeneID:4555412"
/translation="MPFVNADFKDDLPNCVDIVDIINRRVPLKKVGKDYKACCPFHHE
KTPSFSVSVEKQMYKCFGCDEGGGVINFVMKFDNLGLVEAIETISGELGISVVYDENV
KSVDSRLARYRNLMQRVRQFYIQQLKQSPAKDKAVNYAKNRGISGKIAKYFELGFAPP
SSNLLSEFEQNDQNIADLKTMGLLCDDQYRSGQYYDFFKDRLMFPIHNAKGNIIAFGG
RTFDNNTKVKYLNSPETPIFSKSKELYGLYHARKYSRSIDYILVVEGYMDVIALHQVG
ISQVVATLGTATTIEHLNILSRVTNTIIFCFDGDNAGKKAAWRALNVTLPVIKTGITV
KFLFLPDGEDPDSLVKKESSKVFVTRIENAQPLSQFLFSHIKAELDFSTIEGKTLFLE
KVSTLLRKINYKIYQQQLLEGLAGEVNQSIEQIKYILERQDTPVQINTFDIPKNYEEP
PISDFYDSDDNYKALISAPIKSSNSLIDQMIGLLLNYPSMIDETVELRVRKINDADVL
QNLANSALLQEDITLEDIIKPFPQKQQLLDLYNKKKVLKNYDYKDEFLDALLKIEKKQ
KNENALLITNEIEYTKSLQARKGKLKS"
misc_feature 317805..319562
/locus_tag="Rmag_0295"
/note="DNA primase; Validated; Region: dnaG; PRK05667"
/db_xref="CDD:180189"
misc_feature 317805..318089
/locus_tag="Rmag_0295"
/note="CHC2 zinc finger; Region: zf-CHC2; pfam01807"
/db_xref="CDD:110780"
misc_feature 318150..318539
/locus_tag="Rmag_0295"
/note="DNA primase catalytic core, N-terminal domain;
Region: Toprim_N; pfam08275"
/db_xref="CDD:203896"
misc_feature 318558..318803
/locus_tag="Rmag_0295"
/note="TOPRIM_DnaG_primases: The topoisomerase-primase
(TORPIM) nucleotidyl transferase/hydrolase domain found in
the active site regions of proteins similar to Escherichia
coli DnaG. Primases synthesize RNA primers for the
initiation of DNA replication. DnaG...; Region:
TOPRIM_DnaG_primases; cd03364"
/db_xref="CDD:173784"
misc_feature order(318576..318581,318588..318590,318708..318710,
318714..318716,318720..318722)
/locus_tag="Rmag_0295"
/note="active site"
/db_xref="CDD:173784"
misc_feature order(318576..318578,318708..318710)
/locus_tag="Rmag_0295"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173784"
misc_feature order(318582..318587,318603..318608,318636..318638)
/locus_tag="Rmag_0295"
/note="interdomain interaction site; other site"
/db_xref="CDD:173784"
misc_feature 318885..319061
/locus_tag="Rmag_0295"
/note="DnaB-helicase binding domain of primase; Region:
DnaB_bind; pfam10410"
/db_xref="CDD:204477"
gene complement(319565..321445)
/locus_tag="Rmag_0296"
/db_xref="GeneID:4555413"
CDS complement(319565..321445)
/locus_tag="Rmag_0296"
/EC_number="2.4.1.129"
/note="PFAM: penicillin-binding protein, transpeptidase;
Penicillin-binding protein, dimerisation domain;
KEGG: tcx:Tcr_0562 peptidoglycan glycosyltransferase"
/codon_start=1
/transl_table=11
/product="peptidoglycan glycosyltransferase"
/protein_id="YP_903547.1"
/db_xref="GI:118602332"
/db_xref="InterPro:IPR001460"
/db_xref="InterPro:IPR005311"
/db_xref="GeneID:4555413"
/translation="MSGKISTISKALILRRVQNYWHRQGAIKYFFIFLFSVFSYQTTS
ISQSNIIGLSIQNRAYHQATSLETKIAQRGDILDRNGHILASNLLLKRLNLDPTLIQV
EFIPKLARILDIKVQTLSKLLASKRKIGSKYLIIKKNITLTDPIINKLKQLNLMRILV
CANKNITNKLSFIERTLNTLNLQKTKTTYTLVKQCKKARIAGVALQQDTKRYYPKSAS
LAPLLGRVNANKKGASGIEGEFENRLAGHNGQTLINFKANTNEAYFNSKTIIQIQQGQ
NIMLTIDTDIQYHAYEAIKKAVQKHESDSGSAIILTPNGEVLAMVNYPADNPNDNSTY
NAEHYRNRVLSDKVEPGSTMKPFTMLLALDKNQITATEDEFIDVSKRIGHIKPDGKYK
QMTIKKILQRSHNLGTVNISERLEPEAMYNTWNKLGFGHQLDLIPSIENSGSLRHFNS
WTLSDKRTLSFGHGPMETNLAQLARAYLVFANKGAIPQLKLIKNTSTENITQVFNKQS
IAKIAQLLSTVTSNQGSGYRAQIKGYNVAGKTGTAEMVVNGSYNKKGAKRTFFTGFVP
VKKPKYIMAVRLDYPKKCYTSWNPNLRSKCEGSNSAAMVFKEAMGHILNNDVSIKLSM
KN"
misc_feature complement(319601..321358)
/locus_tag="Rmag_0296"
/note="Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane];
Region: FtsI; COG0768"
/db_xref="CDD:31111"
misc_feature complement(320687..321235)
/locus_tag="Rmag_0296"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:202738"
misc_feature complement(319616..320530)
/locus_tag="Rmag_0296"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene complement(321442..321714)
/locus_tag="Rmag_0297"
/db_xref="GeneID:4555414"
CDS complement(321442..321714)
/locus_tag="Rmag_0297"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903548.1"
/db_xref="GI:118602333"
/db_xref="GeneID:4555414"
/translation="MRLNINKTKLNIALILGVVALSILTIYWHHQMYLLYTQSKHIEA
RNQQLVALHKQLLIKQSQTTSGSEIKAKALKILKMQAPKRQIELLL"
misc_feature complement(321445..321690)
/locus_tag="Rmag_0297"
/note="Septum formation initiator; Region: DivIC; cl11433"
/db_xref="CDD:209318"
gene complement(321716..322639)
/gene="mraW"
/locus_tag="Rmag_0298"
/db_xref="GeneID:4555415"
CDS complement(321716..322639)
/gene="mraW"
/locus_tag="Rmag_0298"
/note="TIGRFAM: S-adenosyl-methyltransferase MraW;
PFAM: methyltransferase;
KEGG: tcx:Tcr_0559 methyltransferase"
/codon_start=1
/transl_table=11
/product="S-adenosyl-methyltransferase MraW"
/protein_id="YP_903549.1"
/db_xref="GI:118602334"
/db_xref="InterPro:IPR002903"
/db_xref="GeneID:4555415"
/translation="MIFNHHQSVMLNESIGALNIKTDGIYIDATFGRGGHAQGILNKL
GEQGKLIAFDQDINAIEYAHKNFTDSRLTLIYSAFSNMLNIITQQGLMSKIDGILMDL
GVSSPQLDNAQRGFSFKADGPLDMRMNQTTGMSATQWLNLANEEEIANVIYQFGDEKR
SRHIATRIKKYQQKHTLETTLALAGIVSKVVKRQKNKHPATRTFQAIRIFINQELKQL
EDVLEQSKDILRKDGRLSIISFHSIEDRIVKHFIQKNSRQKNLPKGLPIIDYKIEKTC
LKNLGKYFASKAEISRNKRARSAILRVASKN"
misc_feature complement(321719..322639)
/gene="mraW"
/locus_tag="Rmag_0298"
/note="Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane]; Region:
COG0275"
/db_xref="CDD:30623"
misc_feature complement(321719..322630)
/gene="mraW"
/locus_tag="Rmag_0298"
/note="16S rRNA m(4)C1402 methyltranserfase; Provisional;
Region: PRK00050"
/db_xref="CDD:178824"
gene 322947..323222
/locus_tag="Rmag_0299"
/db_xref="GeneID:4555416"
CDS 322947..323222
/locus_tag="Rmag_0299"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903550.1"
/db_xref="GI:118602335"
/db_xref="GeneID:4555416"
/translation="MPYCLNKFYQFAVGGVLVLLLFPWGSTLKLCTLLNISDVADIFA
YKAITLNIKTTMVIIKNGLALFIWLCYVLIIAKTFTFLNLVYKKNFI"
gene complement(323385..324334)
/locus_tag="Rmag_0300"
/pseudo
/db_xref="GeneID:4555485"
gene complement(324610..325326)
/locus_tag="Rmag_0301"
/pseudo
/db_xref="GeneID:4555486"
gene 325602..327839
/locus_tag="Rmag_0302"
/db_xref="GeneID:4555417"
CDS 325602..327839
/locus_tag="Rmag_0302"
/EC_number="5.99.1.3"
/note="decatenates newly replicated chromosomal DNA and
relaxes positive and negative DNA supercoiling"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit A"
/protein_id="YP_903551.1"
/db_xref="GI:118602336"
/db_xref="InterPro:IPR002205"
/db_xref="InterPro:IPR005742"
/db_xref="InterPro:IPR006691"
/db_xref="GeneID:4555417"
/translation="MNQISLEQQSVAEFSERAYLDYSMYVILDRALPFIGDGLKPVQR
RIVYAMSELGLKSTARFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFID
GQGNWGAPDDPKSFAAMRYTESKLSRYSDLLLSEINQGTVNWVDNFDGSLQEPKNLPA
QVPNLLLNGTSGIAVGMTTNVPPHNLTEVVSACIALLDKPSMDLDGIMQIIRAPDYPT
DADIVSSPADLRQIYETGHGSVKMRAIYQKEKGNIVIEALPFQTSGAKVIIQIAAQIR
AKKLPLVDDIRDESDHENPTRIVIIPRSNRVDVDVLMLHLFATTELEKSYRVNMNVIG
LNGKPGVLSLIPMLKEWLSYRMKVVINRLTYRLDKILVRLHILKGLLIAFLNIDEVIA
IIREHDKPKLVLIDHFKLSDIQVEAILELKLRYLAKLEEIKIQAEQQDLALEKEKLKL
LLSSDLRLKILIKKELKAIIKDFGDERRSNIKRNVNTAQAFSEDDLAPAENITVVLSE
KGWVRSAKGYSIDPNTLNYKAGDSYLTSVKGKSNKPVIFIDSTGRSYSLLANSLSSAR
GQGEPLTGKLSPPSEARFVDVIMGKASQNILLASNIGYGFIATIGDLLSSRQAGKAFF
SLSKGAQMMRIINVDDLDNQFIALVTNRGRLLIFPISELPILSKGKGSKLIQISTKDV
KSRQEFVMNICILLETQHLKVIAGKRHFTIKFQDLSNYISSRARCGKLLPKGYQNVSS
IEAIG"
misc_feature 325620..327824
/locus_tag="Rmag_0302"
/note="DNA topoisomerase IV subunit A; Validated; Region:
PRK05561"
/db_xref="CDD:180129"
misc_feature 325686..326918
/locus_tag="Rmag_0302"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(325686..325766,325779..325928,325932..325937,
325941..325991,325995..326066,326073..326075)
/locus_tag="Rmag_0302"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 325962..325964
/locus_tag="Rmag_0302"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(326754..326762,326769..326780,326802..326807,
326847..326897)
/locus_tag="Rmag_0302"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
gene 327941..328318
/locus_tag="Rmag_0303"
/db_xref="GeneID:4555418"
CDS 327941..328318
/locus_tag="Rmag_0303"
/note="PFAM: 6-pyruvoyl tetrahydropterin synthase and
hypothetical protein;
KEGG: tcx:Tcr_1389 6-pyruvoyl tetrahydropterin synthase
and hypothetical protein"
/codon_start=1
/transl_table=11
/product="putative 6-pyruvoyl tetrahydropterin synthase"
/protein_id="YP_903552.1"
/db_xref="GI:118602337"
/db_xref="InterPro:IPR007115"
/db_xref="GeneID:4555418"
/translation="MFVLKIVTDFASAHLLRDYPGDCSRLHGHNWKVEMMVVARKLNS
NGITIDFREIKKQTKVVVKLLDHQYLNEIAPFDKLNPTAENIAKYFFYEVGQLINTND
VKVKEVTIWETSRASVTYYQGDL"
misc_feature 327950..328303
/locus_tag="Rmag_0303"
/note="6-pyruvoyl tetrahydropterin synthase; Region: PTPS;
pfam01242"
/db_xref="CDD:201680"
misc_feature order(328019..328021,328025..328027,328274..328276,
328292..328294)
/locus_tag="Rmag_0303"
/note="active site"
/db_xref="CDD:29764"
gene 328315..329109
/locus_tag="Rmag_0304"
/db_xref="GeneID:4555419"
CDS 328315..329109
/locus_tag="Rmag_0304"
/EC_number="3.5.4.16"
/note="similar protein in Methanocaldococcus converts GTP
to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the
first step in methanopterin biosynthesis"
/codon_start=1
/transl_table=11
/product="putative GTP cyclohydrolase"
/protein_id="YP_903553.1"
/db_xref="GI:118602338"
/db_xref="InterPro:IPR003801"
/db_xref="GeneID:4555419"
/translation="MSAIHLPDTQNSADTRQIIIDKVGIKDITHPITYIDCDGNKIPT
IGIFTMTVSLSERVKGTHMSRFIEILNEGPCEFSAHNFDKIIDKVRKRLESDIAHITL
NFTFFRRKKAPSSGVESMMDYQVTLYGTLNKDEVQVMMKVVVPVTSLCPCSKSISKYG
AHNQRSHITIKAKAAKDKTLHIEDLIDLAERKASCELYAILKRDDEKVVTERAYDNPA
FVEDLVRDIAVDLNADDKISYYRLESENFESIHNHSAYALIENQKC"
misc_feature 328315..329106
/locus_tag="Rmag_0304"
/note="putative GTP cyclohydrolase; Provisional; Region:
PRK13674"
/db_xref="CDD:184231"
gene 329103..330197
/locus_tag="Rmag_0305"
/db_xref="GeneID:4554868"
CDS 329103..330197
/locus_tag="Rmag_0305"
/EC_number="2.5.1.54"
/note="catalyzes the formation of
3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from
phosphoenolpyruvate and D-erythrose 4-phosphate,
phenylalanine sensitive"
/codon_start=1
/transl_table=11
/product="phospho-2-dehydro-3-deoxyheptonate aldolase"
/protein_id="YP_903554.1"
/db_xref="GI:118602339"
/db_xref="InterPro:IPR006218"
/db_xref="InterPro:IPR006219"
/db_xref="GeneID:4554868"
/translation="MLKKILNKISNIRITKIESITPPIGFIKKYPVKKPQSDFIIHSR
KTIADIISGKDKRLLVVVGPCSIHDPKAAIDYAQRLLKIKQKLDQDLFIIMRVYFEKP
RTTIGWKGLIYDPNLDNSFDMEKGFDLARSLLLGLSKMGMPSATEYLDLITPQYISDL
ISWGAIGARTTESQTHRELASGLSCPVGFKNGTNGNIQIAIDAIVSASNSHMFWSISK
KGVANRYTTTGNPNCHIILRGAADGPNYSKENIDNAAKQLIKDGLLGRVMVDFSHANS
EKNFKNQLLVGNEIVKQVSLGSDKIFGVMIESNIYEGAQAVDELKSLEYGVSITDACL
GWQDTENLLKILASSVQARNTYFYTKSLTF"
misc_feature 329115..330161
/locus_tag="Rmag_0305"
/note="phospho-2-dehydro-3-deoxyheptonate aldolase;
Validated; Region: PRK09261"
/db_xref="CDD:181734"
misc_feature 329244..330131
/locus_tag="Rmag_0305"
/note="DAHP synthetase I family; Region: DAHP_synth_1;
pfam00793"
/db_xref="CDD:189723"
gene 330299..332884
/locus_tag="Rmag_0306"
/db_xref="GeneID:4554869"
CDS 330299..332884
/locus_tag="Rmag_0306"
/EC_number="5.99.1.3"
/note="TIGRFAM: DNA gyrase, A subunit;
PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase
C-terminal repeat, beta-propeller;
KEGG: mca:MCA1421 DNA gyrase, A subunit"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_903555.1"
/db_xref="GI:118602340"
/db_xref="InterPro:IPR002205"
/db_xref="InterPro:IPR005743"
/db_xref="InterPro:IPR006691"
/db_xref="GeneID:4554869"
/translation="MSEHTENPTHFKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDV
RDGLKPVHRRVLYAMEVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQP
FSMRNILIDGQGNFGSVDGDSAAAMRYTEIRMAKLSHELLRDLEKNTVDFIDNYDGSE
SEPLVLPTRVPNLLANGSSGIAVGMATNIPPHNLGEVIEACLKTIDNEDITIDELLEI
MPGPDFPTAGIINGASGIRQAYETGKGKIYLRSVPHIEGEGEDKQSIVVTELPYQVNK
AKLIGKIAKLVKDKRIDGITGLRDESDKDGMRMVIELRRGEVPEVMLNNLYKLTEMQT
VFGINMVAIDKGMPKLMTLKNILEAFIAHRRDVVTRRSIFDLNKARNHAHLLEGLAVA
LHNIDDIIELIKSASNSIDAKEVLVAKTWQGSVIKELIGDRDMVMFKPEDLPTELGLQ
MDGDYQLSQKQVQAILDLKLHRLTGLEKNKIFDEFNELLERIKYLLDILQTPERLMQV
IREELIDIQSNYANARMTQILEHKIDLTLEDLITQERRVVTLSHGGYVKAQSLSDYQA
QRRGGKGKVATKVKDEDFVDQLFIANSHDTVLCFSSLGKVYWLKVYELPMASRIARGK
PIVNLLPLEKEEIINAILTVSKFDENHFVFMVTSSGTCKKTVLTNFSKPRKGGIIAIE
LKDNDQLIGVEITSGEHDIMLFSANGKSIRFKESDVRVVGRTAIGVRGIKLANADKVV
SLIVVNQDNPILTTTEKGFGKRTRLNEYRSQARGGLGVISIKTSDRNGKVVGAIQITD
EDEMMLISNKGTLVRARAVDVSIIGRNTQGVTLINIIKGEKLVSIAKIAEIEDEESEG
ENSIE"
misc_feature 330350..332821
/locus_tag="Rmag_0306"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 330407..331846
/locus_tag="Rmag_0306"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(330407..330490,330503..330652,330656..330712,
330716..330787,330794..330796)
/locus_tag="Rmag_0306"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 330683..330685
/locus_tag="Rmag_0306"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(331478..331486,331493..331504,331535..331540,
331685..331735)
/locus_tag="Rmag_0306"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 331937..332074
/locus_tag="Rmag_0306"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 332081..332227
/locus_tag="Rmag_0306"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 332249..332386
/locus_tag="Rmag_0306"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 332393..332536
/locus_tag="Rmag_0306"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 332549..332689
/locus_tag="Rmag_0306"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 332696..332821
/locus_tag="Rmag_0306"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene complement(333760..335328)
/locus_tag="Rmag_0307"
/db_xref="GeneID:4554870"
CDS complement(333760..335328)
/locus_tag="Rmag_0307"
/note="TIGRFAM: peptide chain release factor 3; small
GTP-binding protein;
PFAM: protein synthesis factor, GTP-binding; elongation
factor Tu, domain 2 protein;
KEGG: lpf:lpl0905 peptide chain release factor 3"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 3"
/protein_id="YP_903556.1"
/db_xref="GI:118602341"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004548"
/db_xref="InterPro:IPR005225"
/db_xref="GeneID:4554870"
/translation="MNEISKRRTFAIISHPDAGKTTVTEKLLLYAGAIKTAGSVKARK
ANTHATSDWMEVEKERGISITSSIMQFAYDNHVINLLDTPGHEDFSEDTYRTLTAVDS
ALMVIDAAKGVEMRTIKLMEVCRLRNTPILTFINKLDREGKEPIDLLDEIETVLNIEC
APITWPIGMGKHFKGIVHLLEDKVYLCEIGKNSKIGEYIIIDDVNNSQLDEILGEDTI
LKIREEIELIHETTTPFSLDEFLAGKQTPVFFGSAISNFGIQNLLDGFIQYAPTPKNR
ESDVREVKPDEDKLTGFVFKIQANMNPKHHDRLAFMRIVSGQYKKGMKVLQVSTNKQI
KISNAVTFMSNERTFAEVAYAGDIIGIHNHGGISIGDTFTQGEKLTFQGIPNFSPELF
RRAQLKDPLKTKALQKGLKQLSEEGATQVFHPIINSSQILGAVGILQFDVVAHRLKHE
YGVDCQFETINIATARWVTGSDKDIEQLKIKAGNNIAIDARGMLAYLAPSSVNLQLTI
ERYPNLVFLATREH"
misc_feature complement(333763..335325)
/locus_tag="Rmag_0307"
/note="peptide chain release factor 3; Provisional;
Region: prfC; PRK00741"
/db_xref="CDD:179105"
misc_feature complement(334510..335313)
/locus_tag="Rmag_0307"
/note="Release Factor 3 (RF3) protein involved in the
terminal step of translocation in bacteria; Region: RF3;
cd04169"
/db_xref="CDD:206732"
misc_feature complement(335266..335289)
/locus_tag="Rmag_0307"
/note="G1 box; other site"
/db_xref="CDD:206732"
misc_feature complement(order(334876..334878,334888..334890,
334996..335001,335068..335073,335125..335130,
335242..335247,335254..335256,335263..335268,
335278..335280,335284..335286))
/locus_tag="Rmag_0307"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206732"
misc_feature complement(order(334567..334575,334912..334914,
334918..334923,335263..335280))
/locus_tag="Rmag_0307"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206732"
misc_feature complement(335128..335163)
/locus_tag="Rmag_0307"
/note="Switch I region; other site"
/db_xref="CDD:206732"
misc_feature complement(335140..335142)
/locus_tag="Rmag_0307"
/note="G2 box; other site"
/db_xref="CDD:206732"
misc_feature complement(335074..335085)
/locus_tag="Rmag_0307"
/note="G3 box; other site"
/db_xref="CDD:206732"
misc_feature complement(335023..335079)
/locus_tag="Rmag_0307"
/note="Switch II region; other site"
/db_xref="CDD:206732"
misc_feature complement(334912..334923)
/locus_tag="Rmag_0307"
/note="G4 box; other site"
/db_xref="CDD:206732"
misc_feature complement(334567..334575)
/locus_tag="Rmag_0307"
/note="G5 box; other site"
/db_xref="CDD:206732"
misc_feature complement(334201..334455)
/locus_tag="Rmag_0307"
/note="Translation_Factor_II_like: Elongation factor Tu
(EF-Tu) domain II-like proteins. Elongation factor Tu
consists of three structural domains, this family
represents the second domain. Domain II adopts a beta
barrel structure and is involved in binding to...; Region:
Translation_Factor_II_like; cl02787"
/db_xref="CDD:207732"
gene complement(335328..335774)
/locus_tag="Rmag_0308"
/db_xref="GeneID:4554871"
CDS complement(335328..335774)
/locus_tag="Rmag_0308"
/note="PFAM: CMP/dCMP deaminase, zinc-binding;
KEGG: xcb:XC_0132 deoxycytidylate deaminase"
/codon_start=1
/transl_table=11
/product="CMP/dCMP deaminase, zinc-binding"
/protein_id="YP_903557.1"
/db_xref="GI:118602342"
/db_xref="InterPro:IPR002125"
/db_xref="GeneID:4554871"
/translation="MNILDKWDERYLSLAKEISTWSKDPSTQVGAITVGQKKEVLSQG
FNGFPRGIHDSDDRYNHRETKYQFVVHAEMNAIYNATYSGTSLDGATLYVYGLPICLE
CAKGIIQVGIKKVIIEKSRELDNWNQSVGLSQKMFIEASIELMIKD"
misc_feature complement(<335463..335753)
/locus_tag="Rmag_0308"
/note="Cytidine and deoxycytidylate deaminase zinc-binding
region. The family contains cytidine deaminases,
nucleoside deaminases, deoxycytidylate deaminases and
riboflavin deaminases. Also included are the apoBec family
of mRNA editing enzymes. All members...; Region:
cytidine_deaminase-like; cl00269"
/db_xref="CDD:206945"
misc_feature complement(order(335466..335468,335475..335477,
335481..335483,335556..335564))
/locus_tag="Rmag_0308"
/note="active site"
/db_xref="CDD:29825"
misc_feature complement(order(335466..335468,335475..335477,
335556..335558,335562..335564))
/locus_tag="Rmag_0308"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29825"
gene complement(335777..336862)
/gene="mraY"
/locus_tag="Rmag_0309"
/db_xref="GeneID:4554872"
CDS complement(335777..336862)
/gene="mraY"
/locus_tag="Rmag_0309"
/EC_number="2.7.8.13"
/note="First step of the lipid cycle reactions in the
biosynthesis of the cell wall peptidoglycan"
/codon_start=1
/transl_table=11
/product="phospho-N-acetylmuramoyl-pentapeptide-
transferase"
/protein_id="YP_903558.1"
/db_xref="GI:118602343"
/db_xref="InterPro:IPR000715"
/db_xref="InterPro:IPR003524"
/db_xref="GeneID:4554872"
/translation="MFLELINFLAQFDAGFNVLNYLTVRAILAMLSALFFSLMLGRVF
INQLQQYQIGQIIRTDGPKSHLIKAGTPTMGGILILFTFMISVLIWGDWSNIYLWIVI
VTSIIFGTIGFTDDYIKIKHKSSNGLSFSIKFLTQSLGAIVISTWIVLISQDSIQTQL
LIPFFKDTMLPLGIIGFLILSYFVIVGSSNAVNLTDGLDGLAIMPVILISGALAIFAY
LSGHYNFSSYLNIPFMPGTGELFVICAALIGAGLGFLWFNTYPAEIFMGDVGSLFLGA
ILAVITILIRQEILLFIMGSVFVAETLSVIIQVSYYKRYKKRIFLMAPLHHHFEKKGM
SEPKIIVRFWMVTLILVLVSLASIKIR"
misc_feature complement(335780..336817)
/gene="mraY"
/locus_tag="Rmag_0309"
/note="phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional; Region: mraY; PRK00108"
/db_xref="CDD:178869"
misc_feature complement(335792..336682)
/gene="mraY"
/locus_tag="Rmag_0309"
/note="Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of...;
Region: GT_MraY; cd06852"
/db_xref="CDD:133462"
misc_feature complement(336515..336520)
/gene="mraY"
/locus_tag="Rmag_0309"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133462"
misc_feature complement(336059..336070)
/gene="mraY"
/locus_tag="Rmag_0309"
/note="putative catalytic motif [active]"
/db_xref="CDD:133462"
misc_feature complement(order(335879..335893,335909..335911))
/gene="mraY"
/locus_tag="Rmag_0309"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:133462"
gene complement(336868..337869)
/locus_tag="Rmag_0310"
/db_xref="GeneID:4554873"
CDS complement(336868..337869)
/locus_tag="Rmag_0310"
/EC_number="5.2.1.8"
/note="PFAM: peptidylprolyl isomerase, FKBP-type;
peptidyl-prolyl cis-trans isomerase, cyclophilin type;
KEGG: tde:TDE2391 peptidyl-prolyl cis-trans isomerase"
/codon_start=1
/transl_table=11
/product="peptidylprolyl isomerase"
/protein_id="YP_903559.1"
/db_xref="GI:118602344"
/db_xref="InterPro:IPR001179"
/db_xref="InterPro:IPR002130"
/db_xref="GeneID:4554873"
/translation="MTYRLFLLLTLIISLPSQAKLEEGLYANLHTNQGDIILKFEFEK
TPLTVINFVGLAQGKKHSNIQIGKPFYNGLKFHRVIDNFIVQGGDPKGNGTGGPGYQF
IDEITDDLKHDDGGILSMANSGPNTNGSQFFITYKAAPWLDGKHTVFGRVVEGMNVVN
RIKQDDFIRKVNIIRIGEKAKNFQTDEAAFQATNAKYTSKEEKQLAHKKQSLVKFVNQ
NYPNTKLMTAGYFVEINQIGKDNQPKKGDLVKINLSIDLSDGTSIRKAEKPLQFAAGS
GALIKLIDDEVLQMTLNEKRIIIASLNQIYSDNKRSNLSQDSILIFKLELLSINDIR"
sig_peptide complement(337810..337869)
/locus_tag="Rmag_0310"
/product="hypothetical protein"
/EC_number="5.2.1.8"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.991 at
residue 20"
misc_feature complement(337372..337785)
/locus_tag="Rmag_0310"
/note="cyclophilin: cyclophilin-type peptidylprolyl cis-
trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the...; Region:
cyclophilin; cd00317"
/db_xref="CDD:29390"
misc_feature complement(order(337432..337434,337444..337449,
337471..337473,337477..337479,337504..337509,
337612..337614,337618..337623,337630..337632,
337636..337638))
/locus_tag="Rmag_0310"
/note="active site"
/db_xref="CDD:29390"
misc_feature complement(336889..337155)
/locus_tag="Rmag_0310"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; pfam00254"
/db_xref="CDD:201116"
gene 337987..338220
/locus_tag="Rmag_0311"
/db_xref="GeneID:4554874"
CDS 337987..338220
/locus_tag="Rmag_0311"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: par:Psyc_0327 putative 4Fe-4S ferredoxin"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin iron-sulfur binding
domain-containing protein"
/protein_id="YP_903560.1"
/db_xref="GI:118602345"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4554874"
/translation="MSLLITDECINCDVCEPECPNDAIYMGDEIYEIDGDKCTECKGH
FDEPQCVEVCPVDCCLSDPNSVETEEELLAKIK"
misc_feature 338011..338157
/locus_tag="Rmag_0311"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
gene complement(339057..340175)
/locus_tag="Rmag_0312"
/db_xref="GeneID:4554875"
CDS complement(339057..340175)
/locus_tag="Rmag_0312"
/EC_number="2.6.1.44"
/note="PFAM: aminotransferase, class V;
KEGG: cps:CPS_2190 aminotransferase, class V"
/codon_start=1
/transl_table=11
/product="alanine-glyoxylate aminotransferase"
/protein_id="YP_903561.1"
/db_xref="GI:118602346"
/db_xref="InterPro:IPR000192"
/db_xref="GeneID:4554875"
/translation="MQSFNPPVRTLMGPGPSDVHPRILSAMARPTIGHLDPAFVSMMD
ETKEGLKTIFKTRNKLTLPVSAPGSAGMETCFSNLVEPDDKVIVCINGVFGMRMKENV
TRLGGKAIIVEDNWGEAVSANKLEEALKNNPDASIVAFVHAETSTGAQSDAKTLCKLA
HQYDCITIVDAVTSLGGTELRVDEWEIDAIYSGTQKCLSAMPGISPISFGERAIKKLS
IRKTPVSSWFLDLNLVMEYWSEGAKRTYHHTAPVNTLYGLHESLVMILKEGIENSWTR
HQKNHELLRDGLEAMGINFLVNKKDRLPQLNSVFIPEGVDDVQIRATLLNDYNLEIGA
GLGVYAGKIWRIGLMGYASRKENIILCLSALKEILASK"
misc_feature complement(339066..340160)
/locus_tag="Rmag_0312"
/note="Serine-pyruvate aminotransferase/archaeal aspartate
aminotransferase [Amino acid transport and metabolism];
Region: COG0075"
/db_xref="CDD:30424"
misc_feature complement(339066..340148)
/locus_tag="Rmag_0312"
/note="Alanine-glyoxylate aminotransferase (AGAT) family.
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to alanine-glyoxylate
aminotransferase (AGAT); Region: AGAT_like; cd06451"
/db_xref="CDD:99744"
misc_feature complement(order(339201..339203,339423..339434,
339492..339494,339570..339572,339591..339593,
339861..339866,339876..339878,339885..339887,
339957..339959,339975..339980,340068..340070,
340074..340076,340095..340097,340104..340106))
/locus_tag="Rmag_0312"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99744"
misc_feature complement(order(339588..339593,339660..339662,
339666..339668,339741..339743,339894..339896,
339969..339977))
/locus_tag="Rmag_0312"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99744"
misc_feature complement(339588..339590)
/locus_tag="Rmag_0312"
/note="catalytic residue [active]"
/db_xref="CDD:99744"
gene 340995..342425
/locus_tag="Rmag_0313"
/db_xref="GeneID:4554876"
CDS 340995..342425
/locus_tag="Rmag_0313"
/note="PFAM: FAD linked oxidase domain protein;
KEGG: psp:PSPPH_3252 glycolate oxidase, GlcD subunit"
/codon_start=1
/transl_table=11
/product="FAD linked oxidase domain-containing protein"
/protein_id="YP_903562.1"
/db_xref="GI:118602347"
/db_xref="InterPro:IPR004113"
/db_xref="InterPro:IPR006094"
/db_xref="GeneID:4554876"
/translation="MKVIQQLLTQLPKGIVLTGKENTRPFECDGLSMYRQNPLAVVLP
ENIAQIKQVLKICKVNNTPVVTRGAGTGLAGGAMPLEKSIVLGLSKLNRVILIDVKNR
LAIVEPGVRNIAISEAVAQHCLYYAPDPSSQIICTIGGNVAENSGGVHCLKYGLTVHN
VKAIKILTIDGDELILSRQDDGLGLLALMNGSEGLLGIIIEITVKLTPTPVLARVVMA
GFGSVRDCANVVSDIIRDGIIPAGLEMMDSFAIEAAERFAKVGYPLDAKALLLCELDG
TQAQVQSELDRVLKVLSSASTLKVSEGEEERLNFWKGRKSAFPAVGRLSPDYYCMDGT
IPRRHLADMLEKINELSRKYQLRVANVFHAGDGNLHPLILYDANIEGESEKVEEFGTE
ILKLSVDMGGTITGEHGVGVEKLNAMCHQFNAKELAIFHKIKSVFDPKSLLNPGKAVP
ELHRCAELGAMHVHHGKLPYLELERF"
misc_feature 341001..342422
/locus_tag="Rmag_0313"
/note="glycolate oxidase subunit GlcD; Provisional;
Region: PRK11230"
/db_xref="CDD:183043"
misc_feature 341106..341525
/locus_tag="Rmag_0313"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
gene 342425..342958
/locus_tag="Rmag_0314"
/db_xref="GeneID:4554877"
CDS 342425..342958
/locus_tag="Rmag_0314"
/note="KEGG: eba:ebA4491 FAD linked oxidase"
/codon_start=1
/transl_table=11
/product="FAD/FMN-containing dehydrogenases-like"
/protein_id="YP_903563.1"
/db_xref="GI:118602348"
/db_xref="GeneID:4554877"
/translation="MSNRIIQLQELIKDANNLHINSEWLAHVGVIEYFPEELVITIKA
GTKISDIQMKLAKHNQTLPFFIKIADMSIGAAYAQGAQDLSDCVLGVKIIDGTGEYLN
FGGQVMKNVAGYDVARLLVGSKGKLALITQISFKVIPISYITQLSASIKRTTTSQLRQ
QIERKLKQVFDPRGIFH"
misc_feature <342509..342736
/locus_tag="Rmag_0314"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
gene 342958..344082
/locus_tag="Rmag_0315"
/db_xref="GeneID:4554878"
CDS 342958..344082
/locus_tag="Rmag_0315"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein; protein of unknown function DUF224, cysteine-rich
region domain protein;
KEGG: neu:NE0673 glycolate oxidase (iron-sulfur subunit)
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903564.1"
/db_xref="GI:118602349"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR004017"
/db_xref="GeneID:4554878"
/translation="MRTIDIQNLKANDIIRKCVHCGFCLATCPTYQLLGDELDSPRGR
IYLIKSALENHHFSKQSIIRLDRCLTCRSCETTCPSGVEYGQLVNIGREFVEQKRPFW
QKVSRYFIRQFLTTPILFNPIGFIFRHSKIKGKPIKPIVKIGKVLLLGGCVQSVLAPN
INHSIKNILAKLGYETVETPQKQCCGAIDQHLSASHDALAKIKRNIDAWLKIESEVII
SSASGCGLMVKDYVSMFEVLDPYYQKAQLIVNKTKDIAEFLSDKDLSQLNLEKVNISY
HEPCTLQHGQQLGGLVDSILNLLGYQQTPIVDSHLCCGSAGTYSIFQPKLSQQLKINK
LQNLQSDNPEVIVTANIGCLIHLQKGTKIPIKHWVELLDN"
misc_feature 342988..344076
/locus_tag="Rmag_0315"
/note="glycolate oxidase iron-sulfur subunit; Provisional;
Region: glcF; PRK11274"
/db_xref="CDD:183069"
misc_feature <342994..>343278
/locus_tag="Rmag_0315"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature 343408..343644
/locus_tag="Rmag_0315"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature 343777..344031
/locus_tag="Rmag_0315"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene 344806..345219
/locus_tag="Rmag_0316"
/db_xref="GeneID:4554879"
CDS 344806..345219
/locus_tag="Rmag_0316"
/note="SMART: Rhodanese domain protein;
KEGG: pol:Bpro_0171 rhodanese-like"
/codon_start=1
/transl_table=11
/product="rhodanese domain-containing protein"
/protein_id="YP_903565.1"
/db_xref="GI:118602350"
/db_xref="InterPro:IPR001763"
/db_xref="GeneID:4554879"
/translation="MNQLIEYLPKKAFERLQVNQNAILIDVRCEAENKFVGRPIECIF
IPWLDDPDWKPNEGKFIAAIKRFVGNKNNGLEREIILICRSGYRSNDAGKCLIENGFT
NVAHVVSGFEGGLDENDQRGNLNGWRHNGMPWLQC"
misc_feature 344827..345192
/locus_tag="Rmag_0316"
/note="Member of the Rhodanese Homology Domain
superfamily, subgroup 1. This CD includes the putative
rhodanese-related sulfurtransferases of several
uncharacterized proteins; Region: RHOD_1; cd01522"
/db_xref="CDD:29085"
misc_feature 345052..345054
/locus_tag="Rmag_0316"
/note="active site residue [active]"
/db_xref="CDD:29085"
gene 345220..346521
/locus_tag="Rmag_0317"
/db_xref="GeneID:4554880"
CDS 345220..346521
/locus_tag="Rmag_0317"
/note="PFAM: major facilitator superfamily MFS_1;
KEGG: vvy:VV2596 putative AmpG protein"
/codon_start=1
/transl_table=11
/product="major facilitator transporter"
/protein_id="YP_903566.1"
/db_xref="GI:118602351"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:4554880"
/translation="MSKILSAYLDKRMLFIFLNGIASGFPWVIIGSAMTLWLKDAGLT
RTAIGFFGSIFFVYSINWLWAPLLDKIKIPFFKTLGFRRSWLLLLQILLFILIIAISW
TDPKISIVWVSLIALLIVITSATQDIVIDAYRIEIISENKDGKIAAAAAVSTSGWWFG
FGFLGAFAFYLADYSNNWSMVYFVMSFFVLGFILATLLMPKEVHSNQTVTNTPKQWLD
ETFFSPFKDFFNRFGITAILILLFIMFFKIGEAFLGKMSLVFYDDIGLSKTDIATYSK
LLGSTLTIIFSIIASFVSIRFGLLKGLFIGGVSMALTNLMYSYLATIGADKEFLALTI
FLDNFTSAFSTVTFVAFISYLVNKTYTATQYALMSSMGNLGKILFASSSGLLVDSLEG
KDWVIAFGGEWAVFFAITTLMVIPSLIMLFWIGKKFKDLFI"
misc_feature 345220..346485
/locus_tag="Rmag_0317"
/note="muropeptide transporter; Validated; Region: ampG;
PRK11010"
/db_xref="CDD:182898"
misc_feature 345289..346341
/locus_tag="Rmag_0317"
/note="AmpG-like permease; Region: 2A0125; TIGR00901"
/db_xref="CDD:162099"
gene 346518..347501
/locus_tag="Rmag_0318"
/db_xref="GeneID:4554881"
CDS 346518..347501
/locus_tag="Rmag_0318"
/EC_number="3.2.1.52"
/note="PFAM: glycoside hydrolase, family 3 domain protein;
KEGG: tbd:Tbd_0727 beta-N-acetylhexosaminidase"
/codon_start=1
/transl_table=11
/product="Beta-N-acetylhexosaminidase"
/protein_id="YP_903567.1"
/db_xref="GI:118602352"
/db_xref="InterPro:IPR001764"
/db_xref="GeneID:4554881"
/translation="MMGPIMMDVSGLALTTQEKQQLIKPSIGGVILFGRNFESIEQVT
LLIKDIRQVNQNLLIAVDHEGGRVQRFRYGFTHLPAMSKLGALYDKNPDIVIDKAFSC
GFVLAYELLDIGVDFSFAPVLDINYDTSQVIGDRAFHSNPDVIVKLAGSLISGMHKAG
MKCVGKHFPGHGFVTADSHIDLPIDDRPMSDLLQDMKPFKRLINHGLDALMYAHVVYT
QVDDKIAGFSSKWIKDILQNQLKFKGVIFSDDLSMQSAHFIKDITNRVKTSLDSGCDM
VLICNHPEFVAQIIDKDWGVSKKLQSMQGFYKFKSDKINHQQHLASIRDLL"
misc_feature 346518..>347417
/locus_tag="Rmag_0318"
/note="Beta-glucosidase-related glycosidases [Carbohydrate
transport and metabolism]; Region: BglX; COG1472"
/db_xref="CDD:31661"
misc_feature 346521..347390
/locus_tag="Rmag_0318"
/note="beta-hexosaminidase; Provisional; Region: PRK05337"
/db_xref="CDD:180024"
gene 347498..347773
/locus_tag="Rmag_0319"
/db_xref="GeneID:4554882"
CDS 347498..347773
/locus_tag="Rmag_0319"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903568.1"
/db_xref="GI:118602353"
/db_xref="GeneID:4554882"
/translation="MNNDNTQNFEIKLLGAVRKTLIAVAKDTMTKPGLKHPLSQVTQK
MITDCLDIVTSRQIAIEKSLGTHTRMKPVYTDEQVVQSFSVDDLKKA"
gene complement(347815..349971)
/locus_tag="Rmag_0320"
/db_xref="GeneID:4554883"
CDS complement(347815..349971)
/locus_tag="Rmag_0320"
/note="PFAM: UvrD/REP helicase;
KEGG: pha:PSHAa0122 DNA-dependent ATPase I"
/codon_start=1
/transl_table=11
/product="UvrD/REP helicase"
/protein_id="YP_903569.1"
/db_xref="GI:118602354"
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR006162"
/db_xref="GeneID:4554883"
/translation="MNLSEITNDLNDKQCQSVTFNNEKNALILAGAGSGKTRVLTHRI
AYLITQKDIRIDAILAVTFTNKAATEMRERLSTLLRRPIQSMWMGTFHSLAHRLLRTH
YEKSKLTSGFQILDAQDQFRIVKRLMKENSIDESKFPIKKVQWFINNQKNEDIRAQDI
DPDYNYFIKKNLEVFELYEAYCQENDLIDFAELLIRSYELLKNNTDLLNHYQARFEHI
LVDEFQDTNTVQYKWIKLLFNGHNKIFCVGDDDQSIYGWRGAKIENITKLCTDFTPIE
TIRLKQNYRSTGNILNASNALITHNVNRMGKSLWTDAGNGELIDVYEARTETDEANYV
ISNIQKLITNGASPSDCSILYRFNAQSRIFEEALIKYNIPYIIYGGLKFFEYTEIKDA
LSYLRLIENSADNVAFERVVNFPTRGIGNVTVKKIRTFAQDNHTSLFQAAIQISSILP
TRAANALSSFINLIKQITDDTKHLNLSEKVTNLLNTSGLIMHYSNDKIGSKKENLKKL
ITITKQYNHEQDNKMSEVMGFISLTSLDSSGNTNASINQNVQLMTIHSAKGLEFPCVF
LVGMEEDLFPSRQSKNEPHLTDEERRLCYVGMTRAMKKLSLSYAIKRFLYGQSLYAYP
SRFLNEIPSKYLNKIKAKFGATIQNYNDDNTFNKNITPKSDDQISIGALVKHAKFGLG
TVLNFEGQGDSTRVQIKFKQVGTKWLINSYANLEFI"
misc_feature complement(347824..349971)
/locus_tag="Rmag_0320"
/note="DNA-dependent helicase II; Provisional; Region:
uvrD; PRK11773"
/db_xref="CDD:183307"
misc_feature complement(349687..349893)
/locus_tag="Rmag_0320"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(348151..>348318)
/locus_tag="Rmag_0320"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene 350089..350274
/locus_tag="Rmag_0321"
/db_xref="GeneID:4554884"
CDS 350089..350274
/locus_tag="Rmag_0321"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903570.1"
/db_xref="GI:118602355"
/db_xref="GeneID:4554884"
/translation="MTYYEGVKKMEEMGVNDNYIQGWVAGFLNNPEIEEQRITDEWES
GYEDGKEHTDANFTNFC"
gene 350332..351279
/locus_tag="Rmag_0322"
/db_xref="GeneID:4554885"
CDS 350332..351279
/locus_tag="Rmag_0322"
/EC_number="5.4.3.2"
/note="TIGRFAM: lysine 2,3-aminomutase YodO family
protein;
PFAM: Radical SAM domain protein;
KEGG: sde:Sde_1081 hypothetical protein"
/codon_start=1
/transl_table=11
/product="L-lysine 2,3-aminomutase"
/protein_id="YP_903571.1"
/db_xref="GI:118602356"
/db_xref="InterPro:IPR003739"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:4554885"
/translation="MMKDNWQYYARYTLKGANQSNDFFKIEAFKDQDFPIKIPLEFAQ
LIDKSNKNDPLLRQVISSKVLSKSENFSLLPLEEEKYSPVAGLIHKYPNRVLLITSQV
CAIHCQYCFRQNFNYSEHDAISNWNEVQNYIVNDVKINEVILSGGDLLSLSDDKLSIL
IDNIANIAHIKTLRIHTRSIVVMPSRITDKLADTLNQSRLNVVIVLHTNHAQELSVKF
AQKITKLSGVTLLNQSVLLKGVNDSIKILTELCLKLFDLGILPYYLHMLDKVQGAQDF
LVKDDDAIQLHQQLKNNLSGYLVPKLVRDNGNHSKDWLL"
misc_feature 350425..351255
/locus_tag="Rmag_0322"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cl15377"
/db_xref="CDD:210090"
gene complement(351271..351825)
/locus_tag="Rmag_0323"
/db_xref="GeneID:4554886"
CDS complement(351271..351825)
/locus_tag="Rmag_0323"
/note="PFAM: Redoxin domain protein;
KEGG: tbd:Tbd_2118 thioredoxin"
/codon_start=1
/transl_table=11
/product="redoxin domain-containing protein"
/protein_id="YP_903572.1"
/db_xref="GI:118602357"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR006663"
/db_xref="InterPro:IPR011594"
/db_xref="InterPro:IPR013740"
/db_xref="GeneID:4554886"
/translation="MTKNLIIPPRLAFQLGNKIAKIGFICSLFLAFNVAQAISIDDMW
QKERKIKVPDFSLTDLNGNIHTNKSTLGKYLVVNFWATWCPPCLKEIPDFVKFYEKNK
DKVLILGLDYEQAGKAAIIEFTDTFMVNYPIILFDDKNYAQFKKFDEILGMPTTYIYG
PNGNLVDYQMGEMDMMALEKAISK"
sig_peptide complement(351712..351825)
/locus_tag="Rmag_0323"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.896) with cleavage site probability 0.754 at
residue 38"
misc_feature complement(351313..351666)
/locus_tag="Rmag_0323"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:48515"
misc_feature complement(order(351565..351567,351574..351576))
/locus_tag="Rmag_0323"
/note="catalytic residues [active]"
/db_xref="CDD:48515"
gene 351838..352185
/locus_tag="Rmag_0324"
/db_xref="GeneID:4554887"
CDS 351838..352185
/locus_tag="Rmag_0324"
/note="TIGRFAM: arsenate reductase;
PFAM: arsenate reductase and related;
KEGG: sdn:Sden_1646 arsenate reductase"
/codon_start=1
/transl_table=11
/product="arsenate reductase"
/protein_id="YP_903573.1"
/db_xref="GI:118602358"
/db_xref="InterPro:IPR006659"
/db_xref="InterPro:IPR006660"
/db_xref="GeneID:4554887"
/translation="MSTVIYHNPRCSKSRAMLTILEQKNVDFEIIKYLENPPTSNELK
QLLTDLNLEARSLMRKGEPEYKEQGLDDEALTENQLINSMIKTPKLIERPIVRTSKGV
VIGRPPENVLSIL"
misc_feature 351847..352179
/locus_tag="Rmag_0324"
/note="Arsenate Reductase (ArsC) family, ArsC subfamily;
arsenic reductases similar to that encoded by arsC on the
R733 plasmid of Escherichia coli. E. coli ArsC catalyzes
the reduction of arsenate [As(V)] to arsenite [As(III)],
the first step in the...; Region: ArsC_ArsC; cd03034"
/db_xref="CDD:48583"
misc_feature 351853..352179
/locus_tag="Rmag_0324"
/note="ArsC family; Region: ArsC; pfam03960"
/db_xref="CDD:202832"
misc_feature order(351868..351870,352012..352014,352114..352116,
352153..352155)
/locus_tag="Rmag_0324"
/note="catalytic residues [active]"
/db_xref="CDD:48583"
gene complement(352211..352870)
/locus_tag="Rmag_0325"
/db_xref="GeneID:4554615"
CDS complement(352211..352870)
/locus_tag="Rmag_0325"
/note="PFAM: Glutathione S-transferase, N-terminal domain;
KEGG: tcx:Tcr_1309 glutathione S-transferase-like"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase domain-containing
protein"
/protein_id="YP_903574.1"
/db_xref="GI:118602359"
/db_xref="InterPro:IPR004045"
/db_xref="InterPro:IPR005442"
/db_xref="GeneID:4554615"
/translation="MKLELISFKLCPFAQCAIILLNKQKLDFELNHINPMNPPNWFKQ
ISPTEQVPLLKVDERIIFESSVITEFINDISKTNLHPSDPIQKAENRSWIQFSSTLFD
NLFGIVTGDEEKFHTSKKSLFDKLAKVEVVKNNTKFFNGNNFSIIDAAFAPIFMRLNW
INEFTNNILSLNEFKHLSTWSKELLQVDVVKNSVVERLNDVYYSNIEAREGHLLTLLI
D"
misc_feature complement(352313..352864)
/locus_tag="Rmag_0325"
/note="Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Gst;
COG0625"
/db_xref="CDD:30970"
misc_feature complement(352658..352864)
/locus_tag="Rmag_0325"
/note="Glutathione S-transferase (GST) family, N-terminal
domain; a large, diverse group of cytosolic dimeric
proteins involved in cellular detoxification by catalyzing
the conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic...; Region: GST_N_family;
cd00570"
/db_xref="CDD:48493"
misc_feature complement(order(352664..352669,352676..352678,
352802..352807,352814..352819,352823..352828,
352832..352834))
/locus_tag="Rmag_0325"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:48493"
misc_feature complement(order(352679..352684,352715..352723,
352832..352834))
/locus_tag="Rmag_0325"
/note="GSH binding site (G-site) [chemical binding]; other
site"
/db_xref="CDD:48493"
misc_feature complement(order(352664..352666,352673..352678,
352682..352687,352721..352723))
/locus_tag="Rmag_0325"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48493"
misc_feature complement(352331..352600)
/locus_tag="Rmag_0325"
/note="C-terminal, alpha helical domain of the Glutathione
S-transferase family; Region: GST_C_family; cl02776"
/db_xref="CDD:207726"
misc_feature complement(order(352400..352402,352412..352414,
352421..352426,352433..352435,352577..352579,
352598..352600))
/locus_tag="Rmag_0325"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198286"
misc_feature complement(order(352487..352489,352574..352576,
352583..352588,352595..352600))
/locus_tag="Rmag_0325"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198286"
misc_feature complement(order(352400..352402,352409..352411,
352562..352567,352577..352579))
/locus_tag="Rmag_0325"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198286"
gene complement(353318..353650)
/locus_tag="Rmag_0326"
/db_xref="GeneID:4554616"
CDS complement(353318..353650)
/locus_tag="Rmag_0326"
/note="TIGRFAM: iojap-like protein;
PFAM: Iojap-related protein;
KEGG: sde:Sde_3343 poly(A) polymerase, PcnB"
/codon_start=1
/transl_table=11
/product="iojap-like protein"
/protein_id="YP_903575.1"
/db_xref="GI:118602360"
/db_xref="InterPro:IPR004394"
/db_xref="GeneID:4554616"
/translation="MNLKQQLKTVTDTIEKLKGEDIVTLKILEQSADIEAIVIATGRS
IQHVRGISNNLKIEAKRLNMKMLGIEGIQTGYWVLIDLAEVVVHVMTGKTREFYKLEK
LWSELKNT"
misc_feature complement(353339..353635)
/locus_tag="Rmag_0326"
/note="iojap-like ribosome-associated protein; Region:
iojap_ybeB; TIGR00090"
/db_xref="CDD:161702"
gene complement(353647..354324)
/locus_tag="Rmag_0327"
/db_xref="GeneID:4554617"
CDS complement(353647..354324)
/locus_tag="Rmag_0327"
/EC_number="2.7.7.18"
/note="TIGRFAM: cytidyltransferase-related domain;
nicotinate (nicotinamide) nucleotide adenylyltransferase;
PFAM: cytidylyltransferase;
KEGG: eca:ECA1306 nicotinate-nucleotide
adenylyltransferase"
/codon_start=1
/transl_table=11
/product="nicotinate-nucleotide adenylyltransferase"
/protein_id="YP_903576.1"
/db_xref="GI:118602361"
/db_xref="InterPro:IPR004820"
/db_xref="InterPro:IPR004821"
/db_xref="InterPro:IPR005248"
/db_xref="GeneID:4554617"
/translation="MSIAKEPRFKMISFFGGSFDPIHYGHLKNATQLKTELGLSKLFL
MPCAKPVHKKQLNFNVNQRMDMLRLAVEEFNTLSIDTREVNHNRDSYTIDSLKHIQSD
YQNDSICLIMGVDSFNTLSSWKAYQVFYQYCHLVVIARADTFTHQEKYGFKLTSTVGD
LAKQKTGFVFFANNQILDISSSAIHDILLNILQRRINTTLSNKIRDQQNLSKLLPKSI
IDYIDTL"
misc_feature complement(353656..354306)
/locus_tag="Rmag_0327"
/note="nicotinic acid mononucleotide adenylyltransferase;
Provisional; Region: nadD; PRK00071"
/db_xref="CDD:178839"
misc_feature complement(353656..354291)
/locus_tag="Rmag_0327"
/note="Nicotinamide/nicotinate mononucleotide
adenylyltransferase; Region: NMNAT; cd02165"
/db_xref="CDD:185680"
misc_feature complement(order(353788..353790,353905..353910,
353953..353958,353977..353982,353986..353991,
353995..353997,354049..354057,354175..354177,
354238..354240,354247..354252,354256..354258,
354268..354282))
/locus_tag="Rmag_0327"
/note="active site"
/db_xref="CDD:185680"
misc_feature complement(354247..354258)
/locus_tag="Rmag_0327"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:185680"
gene complement(354321..355043)
/locus_tag="Rmag_0328"
/db_xref="GeneID:4554618"
CDS complement(354321..355043)
/locus_tag="Rmag_0328"
/note="PFAM: beta-lactamase domain protein;
KEGG: bsu:BG12648 involved in polyketide synthesis"
/codon_start=1
/transl_table=11
/product="beta-lactamase domain-containing protein"
/protein_id="YP_903577.1"
/db_xref="GI:118602362"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:4554618"
/translation="MDIQIFKEKGYTLEILYCIGVLEDSIHFIFDHNTKTCAIVDPAW
DAPLFIQRIHNKGYILTDIWLTHWHFDHTNAVDEIVKATGAKITVGVNEVPYLQIDSL
PETVDNNDTIFIGNTPAKIINTPGHSAGGICYLLDGHIIAGDTLFVYGAGHCSLPGGN
INELFHSMQKLKRIDDNVMLHCGHDYGSRVNTTMGEQKQGNAFLLIDNEADFLNYVNS
MQQGKIPYPTDAVTQTEIKAML"
misc_feature complement(<354486..354998)
/locus_tag="Rmag_0328"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; cl00446"
/db_xref="CDD:207049"
misc_feature complement(354483..354989)
/locus_tag="Rmag_0328"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
gene 355140..355215
/locus_tag="Rmag_R0011"
/note="tRNA-Ala1"
/db_xref="GeneID:4555584"
tRNA 355140..355215
/locus_tag="Rmag_R0011"
/product="tRNA-Ala"
/db_xref="GeneID:4555584"
gene 355237..355311
/locus_tag="Rmag_R0012"
/note="tRNA-Glu1"
/db_xref="GeneID:4555585"
tRNA 355237..355311
/locus_tag="Rmag_R0012"
/product="tRNA-Glu"
/db_xref="GeneID:4555585"
gene 355375..355449
/locus_tag="Rmag_R0013"
/note="tRNA-Glu2"
/db_xref="GeneID:4554606"
tRNA 355375..355449
/locus_tag="Rmag_R0013"
/product="tRNA-Glu"
/db_xref="GeneID:4554606"
gene 355482..356426
/locus_tag="Rmag_0329"
/db_xref="GeneID:4554619"
CDS 355482..356426
/locus_tag="Rmag_0329"
/EC_number="5.4.99.-"
/note="KEGG: eci:UTI89_C2927 ribosomal large subunit
pseudouridine synthase D;
TIGRFAM: pseudouridine synthase, RluA family;
PFAM: RNA-binding S4 domain protein; pseudouridine
synthase"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
D"
/protein_id="YP_903578.1"
/db_xref="GI:118602363"
/db_xref="InterPro:IPR002942"
/db_xref="InterPro:IPR006145"
/db_xref="InterPro:IPR006224"
/db_xref="InterPro:IPR006225"
/db_xref="GeneID:4554619"
/translation="MSLLSVIIPNRFIGQRIDAAMAQMLPNYSRVKITYWIKSGDALI
HHKTFKPKEKVLGGEVITLSIKIEKTNAWLAQDIVIDVVYEDEAIIIVNKPVNLVTHP
GVSNWTGTLANALLHYDSSLANLDRAGIVHRLDKNTSGLMVVARSEYAQKYLTRQLQT
HSISREYSAIVYGHMISGGTVDKPIGRDPKDRIRQTVTESGKDALTHYRVIERFAHHT
HVKVMLETGRTHQIRVHLSFIGHPLIADPMYGGKIRFPKKADKQLKNSLKNFNRQTLH
AKKLTLIHPTSTELMSWKVPLPQDMQDLLQVLAKFDAN"
misc_feature 355491..356405
/locus_tag="Rmag_0329"
/note="23S rRNA pseudouridine synthase D; Provisional;
Region: rluD; PRK11180"
/db_xref="CDD:183020"
misc_feature 355524..355760
/locus_tag="Rmag_0329"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(355527..355529,355563..355568,355572..355577,
355581..355586,355593..355598,355602..355604,
355623..355625,355626..355643,355647..355649)
/locus_tag="Rmag_0329"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 355746..356327
/locus_tag="Rmag_0329"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(355875..355886,356178..356180)
/locus_tag="Rmag_0329"
/note="active site"
/db_xref="CDD:211346"
gene 356580..356958
/locus_tag="Rmag_0330"
/pseudo
/db_xref="GeneID:4555487"
gene complement(357197..357592)
/locus_tag="Rmag_0331"
/db_xref="GeneID:4554620"
CDS complement(357197..357592)
/locus_tag="Rmag_0331"
/note="PFAM: peptidase S24, S26A and S26B;
KEGG: tbd:Tbd_1516 hypothetical protein"
/codon_start=1
/transl_table=11
/product="putative prophage repressor"
/protein_id="YP_903579.1"
/db_xref="GI:118602364"
/db_xref="InterPro:IPR006198"
/db_xref="GeneID:4554620"
/translation="MSDLDTPQKLFQTNCSTNSEPFALQNLGNYMTPEFSENCIVIID
PSIQIHNRAYAVVRFDDELYFRQYIERGSNKFLICLNTQHDDIELKGEFEIIGCVVQQ
KQRKQKPRHYYHLNPFTKEMDFYASGKLR"
misc_feature complement(357293..357529)
/locus_tag="Rmag_0331"
/note="Peptidase S24 LexA-like proteins are involved in
the SOS response leading to the repair of single-stranded
DNA within the bacterial cell. This family includes: the
lambda repressor CI/C2 family and related bacterial
prophage repressor proteins; LexA (EC...; Region:
S24_LexA-like; cd06529"
/db_xref="CDD:119397"
misc_feature complement(order(357395..357397,357503..357505))
/locus_tag="Rmag_0331"
/note="Catalytic site [active]"
/db_xref="CDD:119397"
gene complement(357580..358389)
/locus_tag="Rmag_0332"
/db_xref="GeneID:4554621"
CDS complement(357580..358389)
/locus_tag="Rmag_0332"
/EC_number="3.2.2.23"
/EC_number="4.2.99.18"
/note="Involved in base excision repair of DNA damaged by
oxidation or by mutagenic agents. Acts as DNA glycosylase
that recognizes and removes damaged bases"
/codon_start=1
/transl_table=11
/product="formamidopyrimidine-DNA glycosylase"
/protein_id="YP_903580.1"
/db_xref="GI:118602365"
/db_xref="InterPro:IPR000191"
/db_xref="InterPro:IPR000214"
/db_xref="InterPro:IPR012319"
/db_xref="GeneID:4554621"
/translation="MPELPEVEITKRGLVPLIINQEVSRVILHRENLRWAIPKNLITI
LANQKIKTIKRRAKYLLIKFEAGTLIIHLGMSGSIKVVDIKTPLLKHEHFELQFNNGT
SMRLNDPRRFGAVLFSKDGSHKLLDSLGVEPLEAVFNNGYLYQKSRNKRKNIKDFIMD
SKIVVGVGNIYACESLFMASINPQRKAGNVSKTRYKILTQCIKDILTQAIKAGGTTLQ
DFSQVDGNPGYFTQTLSVYGCENKTCHFCKSKIIKIVQNQRSTFYCRKCQT"
misc_feature complement(357586..358389)
/locus_tag="Rmag_0332"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:179222"
misc_feature complement(358039..358386)
/locus_tag="Rmag_0332"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature complement(order(358054..358065,358117..358122,
358162..358170,358174..358176,358216..358218,
358381..358386))
/locus_tag="Rmag_0332"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature complement(358384..358386)
/locus_tag="Rmag_0332"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature complement(order(358162..358164,358216..358227,
358354..358356,358363..358368,358372..358383))
/locus_tag="Rmag_0332"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature complement(order(358216..358218,358381..358383))
/locus_tag="Rmag_0332"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature complement(358174..358176)
/locus_tag="Rmag_0332"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature complement(order(358054..358056,358060..358062,
358165..358167))
/locus_tag="Rmag_0332"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature complement(358162..358164)
/locus_tag="Rmag_0332"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature complement(order(358057..358059,358117..358119))
/locus_tag="Rmag_0332"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature complement(357727..358005)
/locus_tag="Rmag_0332"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
gene 358468..359055
/locus_tag="Rmag_0333"
/db_xref="GeneID:4554622"
CDS 358468..359055
/locus_tag="Rmag_0333"
/note="KEGG: noc:Noc_1372 hypothetical protein"
/codon_start=1
/transl_table=11
/product="membrane protein-like"
/protein_id="YP_903581.1"
/db_xref="GI:118602366"
/db_xref="GeneID:4554622"
/translation="MFDRINLVQCKIILGFVTTAIVVYFVGMDVIINQHYAFSVWLHV
LAGIVWIGLLYYFNFVQGPGMVQALADTDGPGTAAIGKYIAPRALLWFRMAAVTTWIL
GLVLLVLQSRGMDGIIGAFTLAQGYQVIGIGAWMGTIMAFNVWFIIWPNQQKILCMKE
ATAEEIVIAKKNAALASSVNVILSIPMLLTMLAWH"
misc_feature 358549..359052
/locus_tag="Rmag_0333"
/note="Protein of unknown function (DUF989); Region:
DUF989; pfam06181"
/db_xref="CDD:203402"
gene 359363..360406
/locus_tag="Rmag_0334"
/db_xref="GeneID:4554623"
CDS 359363..360406
/locus_tag="Rmag_0334"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903582.1"
/db_xref="GI:118602367"
/db_xref="GeneID:4554623"
/translation="MKKQLLIAAVAATMSIAATADVSITGDSYVSFASRKIGLANIGV
NKNHDSQGVRLKVVGSTGDTKITAVIRNGSQTRVNEEPKEIDKNRGLHMDSLYVTTKV
GPVNIKAGDYWGTIGLGARFSSRSKPNSFAASTKIGNWKVGMYTGDGSNSLGRDNNTN
ISTSGKVGPVTIGLVHNPKDFTDITLKGIFRDISVEVERWIDKTEVKNDTTFVRIGGK
VNNFKWDVAQIRNDVVYSAFVENNDKFTPLGSMLIGKGARGGTATATVNVGDFTKILG
VAVSTKLAGNTVKAIITKNTYGTIDEVTGTELIISRSVGGATFTANIAKLSGVEARNL
NAANKGLRLDVKF"
sig_peptide 359363..359425
/locus_tag="Rmag_0334"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.932 at
residue 21"
gene 360514..361197
/locus_tag="Rmag_0335"
/pseudo
/db_xref="GeneID:4555488"
gene 361210..362583
/locus_tag="Rmag_0336"
/db_xref="GeneID:4554624"
CDS 361210..362583
/locus_tag="Rmag_0336"
/note="PFAM: Citrate transporter;
KEGG: sde:Sde_0065 Na+/H+ antiporter (NhaD family)"
/codon_start=1
/transl_table=11
/product="citrate transporter"
/protein_id="YP_903583.1"
/db_xref="GI:118602368"
/db_xref="InterPro:IPR004680"
/db_xref="GeneID:4554624"
/translation="MIKLFKLLTLLPMSAFATSEPFSTLDLTSHWVGYMALMLFVLAY
ILVMVEEFTHFRKSKPVILVAGIIWGLIGWVYSSQGLPHSAEVALRHNILEYSELFLF
LLVAMTYIEAMRERQIFEALKVWLVNKGLTFRQLFWLTGFLAFFISPIADNLTTALIM
GAVVLAVGVGNPRFVSIAFINIVVAANAGGAFSPFGDITTLMVWQKGIVEFSQFFSLL
VPSLINFVVPAAIMHFSIKNEVATVSQSKVDIKLGGIAIVVLFIITIITAVSFHNFLH
LPPAMGMMTGLSYLMIAAYFIRKSERKLQQDGFDVFKKVANAEWDTLLFFFGVILSVG
GLGFMGYLALTSETMYLSLGATYSNILVGVLSAIVDNIPVMFAVLSMNPDMSLGHWLL
VTLTIGVGGSLLSVGSAAGVALMGQSKGLYTFGSHLRWTGVIALGYGASIGAHLLMNG
TLFDVPV"
sig_peptide 361210..361269
/locus_tag="Rmag_0336"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.989) with cleavage site probability 0.683 at
residue 20"
misc_feature 361333..362343
/locus_tag="Rmag_0336"
/note="Citrate transporter; Region: CitMHS; pfam03600"
/db_xref="CDD:146307"
misc_feature order(361339..361350,361384..361425,361498..361551,
361615..361665,361669..361722,361735..361806,
361870..361905,361984..362022,362053..362097,
362152..362154,362164..362217,362269..362316,
362377..362436,362503..362541)
/locus_tag="Rmag_0336"
/note="transmembrane helices; other site"
/db_xref="CDD:29728"
misc_feature 361375..362526
/locus_tag="Rmag_0336"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl15356"
/db_xref="CDD:213135"
gene 362570..363274
/locus_tag="Rmag_0337"
/db_xref="GeneID:4554625"
CDS 362570..363274
/locus_tag="Rmag_0337"
/note="TIGRFAM: putative transcriptional activator, Baf
family;
PFAM: Bordetella pertussis Bvg accessory factor;
KEGG: cps:CPS_4744 putative transcriptional activator"
/codon_start=1
/transl_table=11
/product="Baf family transcriptional activator"
/protein_id="YP_903584.1"
/db_xref="GI:118602369"
/db_xref="InterPro:IPR004619"
/db_xref="GeneID:4554625"
/translation="MCQSELCLLVDIGNTAIKWRLNDETNSALIKEFNITELPKADEI
FVSCVGDCHILNGLNNVHFVKTERMFKSLECGYQIPSTLGSDRWLAMLASIERYPKQN
LLIIDAGTALTFDLVLANGKHQGGLIMPGLSVLRHSFSQFSSGVQQLSLSLTANNTQE
GWIFGTSQMLMGAINTQIEQHLDNYSDLIVVLTCGDAKIIALKLHYQVKLHQNLVLEG
LSSYAQTYKVLHSTLV"
misc_feature 362591..363094
/locus_tag="Rmag_0337"
/note="Type III pantothenate kinase; Region: Pan_kinase;
pfam03309"
/db_xref="CDD:202589"
gene 363305..364504
/locus_tag="Rmag_0338"
/db_xref="GeneID:4554626"
CDS 363305..364504
/locus_tag="Rmag_0338"
/EC_number="6.1.1.2"
/note="catalyzes a two-step reaction, first charging a
tryptophan molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="tryptophanyl-tRNA synthetase"
/protein_id="YP_903585.1"
/db_xref="GI:118602370"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002305"
/db_xref="InterPro:IPR002306"
/db_xref="GeneID:4554626"
/translation="MQDKRVLSGMRPTGQLHLGHYYGVLKNWLALQNEYDSYFFVADW
HTFTTHYSDKIDLNTNVMKMVVDWLSVGINPNTSTIFVQSKVPEHAELHLLLSMLTPL
SWLERVPSYKDQQLKLSTKDLATYGFLGYPLLQSADILIYKAGLVPVGEDQVAHIELT
REVARRFNYLYGREVDFEEKAEIAISKMGKKQAKLYRSLRKVYQEIGNDDALIKAQAL
LQQQQNITLGDRERLLGYIEGVGKIVLPEPESLLTKASKMPGLDGQKMSKSYGNTISL
RDTAEQIRAKIKHMPTDPARIKLTDIGNPQKCLVWQLHKVYSNKSTCDWVVEGCTKAK
IGCVECKQPIINAIEEELTPIQERIAKYQADPGLIKQIIFEGSEKARSVAKETMIEVR
KAMGINY"
misc_feature 363314..364501
/locus_tag="Rmag_0338"
/note="tryptophanyl-tRNA synthetase II; Reviewed; Region:
PRK12282"
/db_xref="CDD:183400"
misc_feature 363317..>363820
/locus_tag="Rmag_0338"
/note="catalytic core domain of tryptophanyl-tRNA
synthetase; Region: TrpRS_core; cd00806"
/db_xref="CDD:173903"
misc_feature order(363323..363337,363353..363355,363359..363364,
363371..363373,363422..363424,363437..363439,
363551..363553,363695..363697,363707..363709,
363716..363718,363743..363745,363749..363754,
363758..363763,363770..363772)
/locus_tag="Rmag_0338"
/note="active site"
/db_xref="CDD:173903"
misc_feature 363353..363364
/locus_tag="Rmag_0338"
/note="HIGH motif; other site"
/db_xref="CDD:173903"
misc_feature order(363434..363436,363443..363448,363569..363574,
363578..363586,363593..363598,363602..363613,
363617..363622,363683..363685,363689..363694,
363701..363706)
/locus_tag="Rmag_0338"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173903"
misc_feature <364034..364441
/locus_tag="Rmag_0338"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature 364103..364114
/locus_tag="Rmag_0338"
/note="active site"
/db_xref="CDD:173912"
misc_feature 364103..364114
/locus_tag="Rmag_0338"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene 364507..365235
/locus_tag="Rmag_0339"
/db_xref="GeneID:4554627"
CDS 364507..365235
/locus_tag="Rmag_0339"
/EC_number="5.4.99.-"
/note="TIGRFAM: Pseudouridine synthase, Rsu;
PFAM: RNA-binding S4 domain protein; pseudouridine
synthase;
KEGG: noc:Noc_1041 pseudouridine synthase, Rsu"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
B"
/protein_id="YP_903586.1"
/db_xref="GI:118602371"
/db_xref="InterPro:IPR000748"
/db_xref="InterPro:IPR002942"
/db_xref="InterPro:IPR006145"
/db_xref="GeneID:4554627"
/translation="MADRLQKLIANAGYGSRRWAEHLIEQGRIEVDNKTASIGDNAEI
TDCVKIDGQKIDLSRYLEQEIKVIILNKQAGVICSNLDDKGRKSVYSLLPKESRWVMV
GRLDLNTSGLLLFTNNGDLANKLMHPSSQIDREYAVRVLGQVEDEDLKKLTQGVKLDD
GFAKFSQIIFGGGQGANRWYKVVLKEGRKHEVRRLWEELGFKVSRLIRIRFGEIRLPN
NLKANQYDYLKPRQVKLLLDIVER"
misc_feature 364507..365229
/locus_tag="Rmag_0339"
/note="16S rRNA uridine-516 pseudouridylate synthase and
related pseudouridylate synthases [Translation, ribosomal
structure and biogenesis]; Region: RsuA; COG1187"
/db_xref="CDD:31380"
misc_feature 364516..364713
/locus_tag="Rmag_0339"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(364516..364518,364549..364554,364558..364563,
364567..364572,364579..364584,364588..364590,
364609..364620,364621..364629,364633..364635)
/locus_tag="Rmag_0339"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 364702..365196
/locus_tag="Rmag_0339"
/note="Pseudouridine synthase, Escherichia coli RluB like;
Region: PseudoU_synth_RluB; cd02556"
/db_xref="CDD:211330"
misc_feature order(364813..364824,365083..365085)
/locus_tag="Rmag_0339"
/note="probable active site [active]"
/db_xref="CDD:211330"
gene 365592..368360
/locus_tag="Rmag_0340"
/db_xref="GeneID:4554628"
CDS 365592..368360
/locus_tag="Rmag_0340"
/EC_number="6.1.1.5"
/note="TIGRFAM: isoleucyl-tRNA synthetase;
KEGG: noc:Noc_2277 isoleucyl-tRNA synthetase, class Ia"
/codon_start=1
/transl_table=11
/product="isoleucyl-tRNA synthetase"
/protein_id="YP_903587.1"
/db_xref="GI:118602372"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002300"
/db_xref="InterPro:IPR002301"
/db_xref="InterPro:IPR010663"
/db_xref="InterPro:IPR013155"
/db_xref="GeneID:4554628"
/translation="MSDYKSSLNLPATQFPMKANLANREGGFLKKWQNDGLYDQIRQQ
NQGKPKFVLHDGPPYANGDIHIGHTVNKVLKDMIVKSKSLSGFDAPYVPGWDCHGLPI
EFNVEKKYGKVGVKIDASTFRSKCRKYADQQVLKQKQDFQRLGILSDWDNPYLTKDFQ
YESDIVRALGRIVKNGHVSKGYKPVHWCTECGSALAETEVEYKDNQSEAIDVKFRIID
DSVFNMNKPVSVVIWTTTPWTLPANEAVALHPELNYVLVDIGDEYLLLAQALVETSIS
RYGIEATIGEQTFSGSELEGLKIKHPFYDKQVPIILGEYVTIDAGTGAVHTAPAHGQE
DFIVGLKYNLPVECLVDIKGVFFKETELLGGQFIFKANDSVIEILKQANTLVKHESLM
HSYPHCWRHKTPVIFRATPQWFISMQKNGLIDTVNREISKVQWMPDWGKKRIELMMDS
RPDWCISRQRFWGVPITLFVHKQTGELHPNTQALFVSIANRIEKEGIEAWFKSDAQDF
IGNDANDYDKTTDILDVWFDSGVSHFTVLKARKELSNVADLYLEGADQHRGWFQLSLI
SSVAINGKAPYKNVLTHGFVVDKNGKKMSKSLGNVMSPQKIVNNLGADVLRLWIASTD
YTSEMTVGDEILKRSADSYRRIRNTMRFMLANMQAFNPVEHLLDNKQMLDLDKWIVAK
TANLQTQIIKAYEQYNFHHVVQLILNFCSNDLGGFYLDVIKDRQYTTQANSLARRSAQ
SALHHITEAMVRWLAPILSFTAEEIWQNMPSEKNTSIFLASWYQDLTFGYENKAIDIT
REISPFIRKQMEGMRGEKIIGSSLESEIDIYCETDIFSTLSQLDDELRFIFITSYIRI
HSLNEKNDDCIKAIEGVFIKVSKSRHEKCVRCWHHREDVGNNAKHPELCGRCVENVDG
KGEIRKFA"
misc_feature 365592..368333
/locus_tag="Rmag_0340"
/note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS;
PRK05743"
/db_xref="CDD:180231"
misc_feature 365736..>366152
/locus_tag="Rmag_0340"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature 365784..365795
/locus_tag="Rmag_0340"
/note="active site"
/db_xref="CDD:173912"
misc_feature 365784..365795
/locus_tag="Rmag_0340"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature order(365784..365786,365793..365795)
/locus_tag="Rmag_0340"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature <366429..>366632
/locus_tag="Rmag_0340"
/note="Leucyl-tRNA synthetase, Domain 2; Region:
tRNA-synt_1_2; pfam13603"
/db_xref="CDD:205781"
misc_feature <366801..367463
/locus_tag="Rmag_0340"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature order(366918..366920,367167..367169,367176..367178,
367245..367259,367263..367265,367269..367271,
367338..367352,367362..367379)
/locus_tag="Rmag_0340"
/note="active site"
/db_xref="CDD:173909"
misc_feature 367368..367382
/locus_tag="Rmag_0340"
/note="KMSKS motif; other site"
/db_xref="CDD:173909"
misc_feature 367482..367979
/locus_tag="Rmag_0340"
/note="Anticodon-binding domain of bacterial and
eukaryotic mitochondrial isoleucyl tRNA synthetases;
Region: Anticodon_Ia_Ile_BEm; cd07960"
/db_xref="CDD:153414"
misc_feature order(367491..367493,367503..367505,367512..367514,
367524..367526,367533..367535,367542..367547,
367689..367691,367698..367703,367710..367715,
367722..367724,367737..367739,367749..367751,
367758..367760)
/locus_tag="Rmag_0340"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153414"
misc_feature order(367533..367535,367542..367544)
/locus_tag="Rmag_0340"
/note="anticodon binding site; other site"
/db_xref="CDD:153414"
misc_feature 368238..368324
/locus_tag="Rmag_0340"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene 368361..369440
/gene="aroB"
/locus_tag="Rmag_0341"
/db_xref="GeneID:4554629"
CDS 368361..369440
/gene="aroB"
/locus_tag="Rmag_0341"
/EC_number="4.2.3.4"
/note="catalyzes the formation of 3-dehydroquinate from
3-deoxy-arabino-heptulonate 7-phosphate; functions in
aromatic amino acid biosynthesis"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate synthase"
/protein_id="YP_903588.1"
/db_xref="GI:118602373"
/db_xref="InterPro:IPR002658"
/db_xref="GeneID:4554629"
/translation="MKTLNLDLQEKSYPIYIGQDLLSEGKLLTKHISGKQVMIVTNTT
VAPLYLEKVQNLLLSFEFAQVILPDGEKYKTLDTLNCIFNALLKNRFDRSCTLIALGG
GVVGDMTGFAAASYQRGVNFIQIPTTLLSQVDSSVGGKTGINHVLGKNMIGIFHQPKC
VLIDIDTLDTLNNQQYSAGMAEVIKYGLLGHLNFFNFLQENIRDLMDRNKPLMAEIIY
QSCQYKINIVVQDELEVGKRALLNLGHTFGHVIENILGYGIFLHGEAISVGMLMAVKL
SHLEGYLSINQVAQVQDLLEKANLPIFIIGKISASDFMKVMLVDKKVINGNIRLILLK
ELGHAFVCNHYKDQLLNQVINEFCQ"
misc_feature 368394..369422
/gene="aroB"
/locus_tag="Rmag_0341"
/note="Dehydroquinate synthase (DHQS) catalyzes the
conversion of DAHP to DHQ in shikimate pathway for
aromatic compounds synthesis; Region: DHQS; cd08195"
/db_xref="CDD:173954"
misc_feature order(368484..368486,368664..368672,368679..368681,
368688..368690,368739..368744,368748..368750,
368805..368807,368814..368816,368859..368861,
368883..368885,368904..368906,368916..368918,
369093..369095,369105..369107,369144..369146)
/gene="aroB"
/locus_tag="Rmag_0341"
/note="active site"
/db_xref="CDD:173954"
misc_feature order(368586..368588,368607..368612,368691..368693,
368700..368702,368706..368714,368778..368783,
368808..368825)
/gene="aroB"
/locus_tag="Rmag_0341"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173954"
misc_feature order(368904..368906,369093..369095,369144..369146)
/gene="aroB"
/locus_tag="Rmag_0341"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173954"
gene 369447..370037
/locus_tag="Rmag_0342"
/db_xref="GeneID:4554630"
CDS 369447..370037
/locus_tag="Rmag_0342"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903589.1"
/db_xref="GI:118602374"
/db_xref="GeneID:4554630"
/translation="MTDKKNPGVEDDEVMITSSISDLEKMLESVEKHADLRTDTKFEK
FFLPALAVFSAIIIGFFVVIYSITLDMTRLANSMDPDMGGNMSSMVKSINNLSNNVEQ
MTVSVAYMQKDFQRVNKNMNIIASKLDNLDAIAVDLTQVSLKMDSLEPMLINMEEMNK
NMANIQNSMQWMQLDLNILRSSFSKPLRIFNNIPML"
gene 370040..370327
/locus_tag="Rmag_0343"
/db_xref="GeneID:4554631"
CDS 370040..370327
/locus_tag="Rmag_0343"
/EC_number="6.3.5.-"
/note="TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C
subunit;
PFAM: Glu-tRNAGln amidotransferase, C subunit;
KEGG: neu:NE2071 Glu-tRNAGln amidotransferase C subunit"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase
subunit C"
/protein_id="YP_903590.1"
/db_xref="GI:118602375"
/db_xref="InterPro:IPR003837"
/db_xref="GeneID:4554631"
/translation="MSLSEKQINQIAYLARLSLNEVQLKNNTQDLNAIFSLIEQLANI
ETDGIEPMLHPLHMFQRLRKDVVIEKEQSVLFQSVAPKTRNGYYLVPTVIE"
misc_feature 370040..370324
/locus_tag="Rmag_0343"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit C;
Reviewed; Region: gatC; PRK00034"
/db_xref="CDD:178810"
gene 370329..371771
/gene="gatA"
/locus_tag="Rmag_0344"
/db_xref="GeneID:4554632"
CDS 370329..371771
/gene="gatA"
/locus_tag="Rmag_0344"
/EC_number="6.3.5.-"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
A"
/protein_id="YP_903591.1"
/db_xref="GI:118602376"
/db_xref="InterPro:IPR000120"
/db_xref="InterPro:IPR004412"
/db_xref="GeneID:4554632"
/translation="MHTKTIVELAQGFKDKDFSCVELTQYYLNRIDQSDLNAFITVTD
ELALAQAQVADDKIASGNANILTGIPYAHKDIFCTKGVKTSAGSRMLDTFVSPYDATV
SQKLNQVNLVMLGKTNMDEFAMGSSNENSFYGAVKNPWNYLKIPGGSSGGSAASVAGG
LSCFATGTDTGGSIRQPASLCGITGIKPTYGRISRYGMIAYASSLDQAGPMTKTAQDA
AIVLNVMAGFDEKDSTSVEQKVPDYTTHLNDSIKGLIIGLPKEFFSSGLDDEVANNIM
AAVKEFEAMGAIVKEVSLPNLAYAIPVYYIVAPCECSSNLSRLDGVRYGYRAKNVKNL
EDLYLRSRSEGFGEEVKRRIMIGAYALSAGYYDAYYLKAQKVRHLISDDFKKVFEQID
VIMGPVSPTTAFDLGSVKDPVSMYLADIYTLSANLAGLPGMSIPAGFAQNLPVGLQLI
GNFWSESRLLNIAHQFQLQTDWHLKTPQEC"
misc_feature 370329..371762
/gene="gatA"
/locus_tag="Rmag_0344"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:30503"
misc_feature 370368..371729
/gene="gatA"
/locus_tag="Rmag_0344"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed; Region: gatA; PRK00012"
/db_xref="CDD:178793"
gene 371773..373203
/gene="gatB"
/locus_tag="Rmag_0345"
/db_xref="GeneID:4554633"
CDS 371773..373203
/gene="gatB"
/locus_tag="Rmag_0345"
/EC_number="6.3.5.-"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
B"
/protein_id="YP_903592.1"
/db_xref="GI:118602377"
/db_xref="InterPro:IPR003789"
/db_xref="InterPro:IPR004413"
/db_xref="InterPro:IPR006075"
/db_xref="InterPro:IPR006107"
/db_xref="GeneID:4554633"
/translation="MEWETVIGLEIHAQLNTKSKIFSAASTQYGQKPNSQACAVDLGL
PGVLPVLNVEVINKAIKFGVAINAHINQRSIFDRKNYFYPDLPKGYQISQMDRPIVGE
GKIEITFDDQTKIVGITRAHLEEDAGKSMHDMFDDDTAIDFNRAGIPLLEIVSEPDMR
SAKEAVIYAKKIHALVQYIDICDGNMQEGSFRFDANVSIRPKGEKELGTRTELKNINS
FKFLERAINLEVERQQDILEESGSIVQETRLYDSVKHETRSMRSKEETNNYRYFPDPD
LLSVEISNELLEKIRQTLPELPTQKKARFVSELGLSDYDADVLTLQKPLADYFETMLE
HHASNAKLCANWIMGELSASLNKHKIDIQNSPITAQALSLLISRISDDTISGKAAKDV
FKAMWNSEGNADEIIQAKGLKQMIGMGEIEAIVEQVIANNARQAVQFKLGNDKIFGFF
VGQIMKLTAGKANPKQVNELLRNKLF"
misc_feature 371773..373197
/gene="gatB"
/locus_tag="Rmag_0345"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit B;
Validated; Region: gatB; PRK05477"
/db_xref="CDD:180111"
misc_feature 371782..372642
/gene="gatB"
/locus_tag="Rmag_0345"
/note="GatB/GatE catalytic domain; Region: GatB_N;
pfam02934"
/db_xref="CDD:202476"
misc_feature 372754..373197
/gene="gatB"
/locus_tag="Rmag_0345"
/note="GatB domain; Region: GatB_Yqey; smart00845"
/db_xref="CDD:197913"
gene 373208..374581
/locus_tag="Rmag_0346"
/db_xref="GeneID:4554828"
CDS 373208..374581
/locus_tag="Rmag_0346"
/note="PFAM: protein of unknown function UPF0061;
KEGG: vpa:VP0909 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903593.1"
/db_xref="GI:118602378"
/db_xref="InterPro:IPR003846"
/db_xref="GeneID:4554828"
/translation="MLDFATLGSDFFSNIDTQSLKQPFLIHKNQALQDRLKLSIKDNE
LLNIASGKNKFQCMQPIASIYAGYQFGHFVPQLGDGRSCLIGQVQGLELSLKGAGQTP
YSRGADGRAVLRSSIREYLCSIAMKGLNIPTTEALTLVGSHSEVYRENIETGAIVMRC
APSHIRFGHFELFAVRGQISQVRQLADFVIEHHYQYCQGENQYIDFFNEVVQKTAIMI
AHWQAQGFVHGVMNTDNMSILGLTIDYGPFGFLETYNPKFICNHSDHEGRYSFDQQPN
IALWNLSRLADSLSSLINTKQAKLVLDKYQNYLVESYSVLMRQKFGLHEKDKQDHVLI
TQFFDMLYQHKKDRTNSLRQLSNVDKLAINTDFNDWIELYDKRVSQENNRNRISMMNS
VNPNYILRNYLAEVAIRKAEDDKDYTEIEILFDLLSKPFEVHQDMEFYTYEAPDWAQG
LTVSCSS"
misc_feature 373214..374500
/locus_tag="Rmag_0346"
/note="Uncharacterized ACR, YdiU/UPF0061 family; Region:
UPF0061; pfam02696"
/db_xref="CDD:111578"
misc_feature 373217..374578
/locus_tag="Rmag_0346"
/note="hypothetical protein; Validated; Region: PRK00029"
/db_xref="CDD:178805"
gene complement(374578..375210)
/locus_tag="Rmag_0347"
/db_xref="GeneID:4554829"
CDS complement(374578..375210)
/locus_tag="Rmag_0347"
/note="PFAM: peptidase M50;
KEGG: tcx:Tcr_1229 peptidase M50"
/codon_start=1
/transl_table=11
/product="peptidase M50"
/protein_id="YP_903594.1"
/db_xref="GI:118602379"
/db_xref="InterPro:IPR008915"
/db_xref="GeneID:4554829"
/translation="MLDIQTLLIWTIPVLFSITVHETAHGWIASKLGDHSARMMGRLT
LNPIKHIDPIGTILVPAFLYLTSGFIFGWAKPVPVNFNALRSPKKDMLWVAIAGPMSN
FIMAIIWLVIILLVVNNIDSQFLIDMGQVGVQINLILAVLNLLPLPPLDGGRIVSSLL
PRKLSYQYDQLEPYGLYILLGLLFLGVFQWVVFPIVKIIQQFMFSVTGLI"
misc_feature complement(374689..375192)
/locus_tag="Rmag_0347"
/note="Uncharacterized homologs of Site-2 protease (S2P),
zinc metalloproteases (MEROPS family M50) which cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. Members of the...; Region:
S2P-M50_like_1; cd06158"
/db_xref="CDD:100079"
misc_feature complement(order(374758..374760,374782..374784,
375136..375138,375145..375150))
/locus_tag="Rmag_0347"
/note="active site"
/db_xref="CDD:100079"
misc_feature complement(374773..374784)
/locus_tag="Rmag_0347"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100079"
gene 375246..376925
/locus_tag="Rmag_0348"
/db_xref="GeneID:4554830"
CDS 375246..376925
/locus_tag="Rmag_0348"
/note="TIGRFAM: prolyl-tRNA synthetase;
PFAM: tRNA synthetase, class II (G, H, P and S);
Anticodon-binding domain protein; YbaK/prolyl-tRNA
synthetase associated region;
KEGG: hch:HCH_04773 prolyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="prolyl-tRNA synthetase"
/protein_id="YP_903595.1"
/db_xref="GI:118602380"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR002316"
/db_xref="InterPro:IPR004154"
/db_xref="InterPro:IPR004500"
/db_xref="InterPro:IPR006195"
/db_xref="InterPro:IPR007214"
/db_xref="GeneID:4554830"
/translation="MKTTKLLIPTQKEVPNDAQIISHQLMIRAGLISKLASGLYSYLP
MGVRVLHKVENIIRQEMNKSGAQEVFMPVVQPAELWKTSGRWDKYGTELLRFTDRHQR
EFCLGPTHEEVITHLAAQYLRSYKQLPMNFYQIQTKFRDEIRPRFGVMRSREFIMKDA
YSFHLDQYSLQQTYDVMYQTYCNIFDRLSLDYHAVLADSGSIGGDASHEFHVLAESGE
DTICFSDESNYAANIEKVSFLKQEKTCKSTLTEERVLTKKKNSIEEVAEFLNVNKSDC
VKILIIKTKDGFKALALRGDHELNEIKAHNLFGNFEFAIDDEIKNLDLKKGFIGIKDL
DIDLIVDYSASVLCDFVCGANEWDYHLMSVNWQGIEFVDADLRSAVEGDYSPDGKGKL
IIKRGIEVGHIFQLGTKYSSAMKVNVIGESGKAITTTMGCYGIGVTRIIAASIEQNYD
DKGIIFPQAIAPFQVVIVPINYNKSTRVKALSDKLYQQFIGAGIEVLLDDRKERAGIM
FADSELLGIPHRMVISDTHADNGNVEYKARDKIDKMQMKFDDALSFIQFKL"
misc_feature 375246..376913
/locus_tag="Rmag_0348"
/note="prolyl-tRNA synthetase; Provisional; Region:
PRK09194"
/db_xref="CDD:181689"
misc_feature 375294..>375890
/locus_tag="Rmag_0348"
/note="Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is responsible
for the attachment of proline to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent formation of...; Region:
ProRS_core_prok; cd00779"
/db_xref="CDD:73229"
misc_feature order(375342..375347,375366..375377,375396..375398,
375447..375455,375459..375464,375522..375524,
375528..375542,375594..375596,375654..375656,
375705..375707)
/locus_tag="Rmag_0348"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73229"
misc_feature 375441..375464
/locus_tag="Rmag_0348"
/note="motif 1; other site"
/db_xref="CDD:73229"
misc_feature order(375570..375572,375576..375578,375663..375665,
375669..375671,375693..375701,375708..375710,
375714..375716,375720..375722)
/locus_tag="Rmag_0348"
/note="active site"
/db_xref="CDD:73229"
misc_feature 375660..375671
/locus_tag="Rmag_0348"
/note="motif 2; other site"
/db_xref="CDD:73229"
misc_feature 375921..376373
/locus_tag="Rmag_0348"
/note="INS is an amino acid-editing domain inserted (INS)
into the bacterial class II prolyl-tRNA synthetase (ProRS)
however, this CD is not exclusively bacterial. It is also
found at the N-terminus of the eukaryotic/archaea-like
ProRS's of yeasts and...; Region: ProRS-INS; cd04334"
/db_xref="CDD:88585"
misc_feature order(376077..376079,376224..376229,376302..376304)
/locus_tag="Rmag_0348"
/note="putative deacylase active site [active]"
/db_xref="CDD:88585"
misc_feature <376419..376586
/locus_tag="Rmag_0348"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature order(376434..376439,376449..376451,376539..376544,
376548..376553,376560..376562)
/locus_tag="Rmag_0348"
/note="active site"
/db_xref="CDD:29813"
misc_feature order(376551..376553,376560..376562)
/locus_tag="Rmag_0348"
/note="motif 3; other site"
/db_xref="CDD:29813"
misc_feature 376629..376913
/locus_tag="Rmag_0348"
/note="ProRS Prolyl-anticodon binding domain, short
version found predominantly in bacteria. ProRS belongs to
class II aminoacyl-tRNA synthetases (aaRS). This alignment
contains the anticodon binding domain, which is
responsible for specificity in tRNA-binding; Region:
ProRS_anticodon_short; cd00861"
/db_xref="CDD:29801"
misc_feature order(376653..376658,376773..376775,376791..376793,
376815..376817,376845..376847,376851..376853)
/locus_tag="Rmag_0348"
/note="anticodon binding site; other site"
/db_xref="CDD:29801"
gene 376933..377745
/locus_tag="Rmag_0349"
/db_xref="GeneID:4554831"
CDS 376933..377745
/locus_tag="Rmag_0349"
/EC_number="4.1.1.65"
/note="KEGG: mfa:Mfla_2122 phosphatidylserine
decarboxylase;
TIGRFAM: phosphatidylserine decarboxylase;
PFAM: phosphatidylserine decarboxylase-related"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="YP_903596.1"
/db_xref="GI:118602381"
/db_xref="InterPro:IPR003817"
/db_xref="InterPro:IPR005221"
/db_xref="GeneID:4554831"
/translation="MIWWQYVIPQHWLSRLMLHFACIKNIWLKNRFIAWFVKSYQVNL
SEAVRENIEDYQNFNDFFTRALKPDARKIADSLIVCPVDGKVSKVGNINNTQIIQAKN
HKYSVEQLLGNDIRSVEFRVGFFITIYLSPKDYHRIHMPYYGKLISMSYIPGDLFSVN
QTTAENVDGLFARNERVVCYFETEFGLCAFVLVGAIFVGSMQTVWHGQINPPYKKQIQ
HFDYSNEGISLKKGQELGRFNMGSTVIMLMPDQTNKFSLKETEVVRMGQALV"
misc_feature 376945..377739
/locus_tag="Rmag_0349"
/note="phosphatidylserine decarboxylase; Reviewed; Region:
psd; PRK00044"
/db_xref="CDD:178818"
gene complement(377720..378889)
/locus_tag="Rmag_0350"
/db_xref="GeneID:4554832"
CDS complement(377720..378889)
/locus_tag="Rmag_0350"
/note="PFAM: CBS domain containing protein; protein of
unknown function DUF21; transporter-associated region;
KEGG: noc:Noc_2263 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903597.1"
/db_xref="GI:118602382"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR001547"
/db_xref="InterPro:IPR002550"
/db_xref="InterPro:IPR005170"
/db_xref="GeneID:4554832"
/translation="MMAINRYRLKVLSKNNKNAKRTEHLLNDLDHLIGTILLGNNFVN
IFASSITTILAIKLWGEGSIVPASLTLTFIILIFAETTPKTFAAKNPEKIALPASIII
TALIKLFKPFVWLIAKLSKMILILFGIKNEPHDNLISSEELKMVVNDAKPIIASNYQK
MLLNIIDLEKVKVEDIMIPRHELISIDINKPDEILKQFERIQHTRLLTYETSSDNITG
ILHMRDIVNLYAKGDFSIDNVLALVRTPYFVPEGTSLAHQLAHFQQQKRRLGLIVDEY
GEVCGMIVLEDILEEIVGQFTSNQNESIDEIIKQKDGSYLIDPRISIRELNNLLQLNL
SVTKAKTLNGLILETLQSIPKRDVSLKIDNVLIEIMHISEQTIKLVKIRLKPVPS"
misc_feature complement(377741..378889)
/locus_tag="Rmag_0350"
/note="Putative Mg2+ and Co2+ transporter CorB [Inorganic
ion transport and metabolism]; Region: CorB; COG4536"
/db_xref="CDD:34183"
misc_feature complement(378437..378889)
/locus_tag="Rmag_0350"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:201879"
misc_feature complement(378017..378346)
/locus_tag="Rmag_0350"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature complement(377735..377968)
/locus_tag="Rmag_0350"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene complement(379012..380289)
/gene="eno"
/locus_tag="Rmag_0351"
/db_xref="GeneID:4554833"
CDS complement(379012..380289)
/gene="eno"
/locus_tag="Rmag_0351"
/EC_number="4.2.1.11"
/note="enolase; catalyzes the formation of
phosphoenolpyruvate from 2-phospho-D-glycerate in
glycolysis"
/codon_start=1
/transl_table=11
/product="phosphopyruvate hydratase"
/protein_id="YP_903598.1"
/db_xref="GI:118602383"
/db_xref="InterPro:IPR000941"
/db_xref="GeneID:4554833"
/translation="MNIKQIKAREVLDSRGNPTVEVDVILDDDTIGSAMVPSGASTGQ
REALELRDGGTRYLGKGVLKAVEFVNTEICNTLINFGIEDLGKIDQAMIDLDGTETKS
RLGANAILAVSLAVAHANANRQHKPLYMSLNQGENYKLPVPMMNIINGGEHANNNVDI
QEFMIIPAGAPSFKEALRYGAEVFHHLKAVLEAKNMNTTVGDEGGFAPDLSSNEDAIK
VILEAIDNAGYKAGKDIFIGIDAASSEFYENGTYNLVSENKSLNSEEFVDYLANWVEN
YPIISIEDGMDENDWNGWNLLTKKIGDKVQLVGDDLYVTNSKFLKQGIEKNITNSILI
KVNQIGTLTETFQVMKMATDAGYTSVMSHRSGETEDTTIADLAVATGCGQIKTGSLSR
SDRLAKYNRLLRIEEELGAKAVYPGLDAFNHLN"
misc_feature complement(379015..380289)
/gene="eno"
/locus_tag="Rmag_0351"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:178845"
misc_feature complement(379066..380274)
/gene="eno"
/locus_tag="Rmag_0351"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:48188"
misc_feature complement(order(379069..379071,379078..379083,
379090..379092,379099..379104,379108..379116,
379183..379191,379663..379665,379669..379671,
379690..379695,379732..379737,379744..379749,
379756..379761,379822..379830,380191..380193,
380227..380229,380239..380265,380269..380271))
/gene="eno"
/locus_tag="Rmag_0351"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48188"
misc_feature complement(order(379360..379362,379441..379443,
379570..379572,380167..380169))
/gene="eno"
/locus_tag="Rmag_0351"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48188"
misc_feature complement(order(379132..379134,379195..379203,
379285..379287,379681..379683,379831..379833))
/gene="eno"
/locus_tag="Rmag_0351"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:48188"
gene complement(380307..381401)
/locus_tag="Rmag_0352"
/db_xref="GeneID:4554834"
CDS complement(380307..381401)
/locus_tag="Rmag_0352"
/note="chaperone Hsp40; co-chaperone with DnaK;
Participates actively in the response to hyperosmotic and
heat shock by preventing the aggregation of
stress-denatured proteins and by disaggregating proteins,
also in an autonomous, dnaK-independent fashion"
/codon_start=1
/transl_table=11
/product="chaperone protein DnaJ"
/protein_id="YP_903599.1"
/db_xref="GI:118602384"
/db_xref="InterPro:IPR001305"
/db_xref="InterPro:IPR001623"
/db_xref="InterPro:IPR002939"
/db_xref="InterPro:IPR003095"
/db_xref="InterPro:IPR012724"
/db_xref="GeneID:4554834"
/translation="MSQKDYYEILGVAKNADAKQIKKAYKRLAMKHHPDRVKNDKASA
EKKFKEIQKAYAILSDVQKRQAYDQFGHVGGNANVGSAGGNPFGGGFGDIFGDIFGGG
SQQSNNRGSDLRYDLEIDLKKAAQGSTVKIRIPKNETCDTCSGIGAKSGTNVKTCSIC
SGVGQVQTQQGFFTVQRPCGTCSGTGQKIEFPCGTCRGQGLVRKQKTLSVKIPAGVDT
GNRIRLSGEGEAGTIGSSSGDLYVQVHVKKHAIFEREDNDLYCEVPIDFATAALGGSI
EVPTLENKLKIKVPSGTQTGKLFRLRDKGISHLQRDGSGDLICQVKIETPVNLNKKQQ
DLLQKFSSSCGKKHHPESDSFFDKMKSFFG"
misc_feature complement(380349..381401)
/locus_tag="Rmag_0352"
/note="chaperone protein DnaJ; Provisional; Region:
PRK10767"
/db_xref="CDD:182712"
misc_feature complement(381222..381389)
/locus_tag="Rmag_0352"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(381243..381248,381255..381260,
381267..381269,381297..381305))
/locus_tag="Rmag_0352"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature complement(<380985..381068)
/locus_tag="Rmag_0352"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:207897"
misc_feature complement(order(380997..381014,381057..381059))
/locus_tag="Rmag_0352"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature complement(380802..380984)
/locus_tag="Rmag_0352"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature complement(order(380814..380816,380823..380825,
380856..380858,380865..380867,380922..380924,
380931..380933,380973..380975,380982..380984))
/locus_tag="Rmag_0352"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature complement(380415..380852)
/locus_tag="Rmag_0352"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature complement(order(380715..380717,380787..380789,
380826..380843))
/locus_tag="Rmag_0352"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature complement(order(380415..380429,380517..380528,
380586..380591,380598..380603))
/locus_tag="Rmag_0352"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene complement(381478..383385)
/gene="dnaK"
/locus_tag="Rmag_0353"
/db_xref="GeneID:4554835"
CDS complement(381478..383385)
/gene="dnaK"
/locus_tag="Rmag_0353"
/note="heat shock protein 70; assists in folding of
nascent polypeptide chains; refolding of misfolded
proteins; utilizes ATPase activity to help fold;
co-chaperones are DnaJ and GrpE; multiple copies in some
bacteria"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_903600.1"
/db_xref="GI:118602385"
/db_xref="InterPro:IPR001023"
/db_xref="InterPro:IPR012725"
/db_xref="InterPro:IPR013126"
/db_xref="GeneID:4554835"
/translation="MSRIIGIDLGTTNSCVAIMDGGNVKIIENSEGDRTTPSIIAYPK
DSEEVLVGQPAKRQAVTNPENTLYAIKRLIGRRFDEDAVQKDINLVPYKIVKVDNGDA
WVEVKGKKMAAPEISAKVIGKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGK
IAGLNVKRIINEPTAAALAYGVDKVKGNKTIAVYDLGGGTFDVSIIEMEDIDGEKHFE
VLSTNGDTFLGGEDFDQRIIGYLVDEFKRDQGVDLTNDPMALQRLKEAAEKAKIELSS
SEQTDVNLPYVTADASGPKHLNIKITRAKLELLVEDLLKRTIEPCKTALKDADLSASD
IDEVILVGGQTRMPKVTKMVQDFFGKEPKKDVNPDEAVAMGAAIQAGVLGGDVKDVLL
LDVTPLSLGIETMGGIMTKLIEKNTTIPTNASQIFSTAVDNQSAVTVHVLQGERNMSS
ANKSLGQFNLEGIPNAPKGQPQVEVTFDIDSDGILDVSAKDKNTGKEQSITIKASSGL
SDEEVEKMIKDAEAHADEDKKFQELVASKNMADSLIHSTKKTLEELKNEVSDDEKSVI
EMAITELEKAIKNDDKKAIDAKIQTLSKKAQPLTEKVQAKSSAENTSKEKSKADDDVV
DADFEEVKDDK"
misc_feature complement(381550..383385)
/gene="dnaK"
/locus_tag="Rmag_0353"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature complement(382246..383385)
/gene="dnaK"
/locus_tag="Rmag_0353"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature complement(order(382360..382362,382792..382803,
382870..382872,383341..383343,383347..383349,
383353..383364))
/gene="dnaK"
/locus_tag="Rmag_0353"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(383462..383941)
/gene="coaD"
/locus_tag="Rmag_0354"
/db_xref="GeneID:4554836"
CDS complement(383462..383941)
/gene="coaD"
/locus_tag="Rmag_0354"
/EC_number="2.7.7.3"
/note="Catalyzes the conversion of ATP and pantetheine
4'-phosphate to diphosphate and 3'-dephospho-coA"
/codon_start=1
/transl_table=11
/product="phosphopantetheine adenylyltransferase"
/protein_id="YP_903601.1"
/db_xref="GI:118602386"
/db_xref="InterPro:IPR001980"
/db_xref="InterPro:IPR004820"
/db_xref="InterPro:IPR004821"
/db_xref="GeneID:4554836"
/translation="MMKKIAIYPGSFDPITNGHIDLIKRASKLFDEIIIGITQNSKKK
AFLSIDDRINAANTTLKDIGNIKVLSFNTLLVDFVAKQNAQVILRGLRAVSDFEYEFQ
LSSMNKHLNPNIETLFMTSAEKYANISSSLVREILTLGGDISIFVPTSVEALLKQRL"
misc_feature complement(383465..383935)
/gene="coaD"
/locus_tag="Rmag_0354"
/note="phosphopantetheine adenylyltransferase;
Provisional; Region: coaD; PRK00168"
/db_xref="CDD:178911"
misc_feature complement(383471..383929)
/gene="coaD"
/locus_tag="Rmag_0354"
/note="Phosphopantetheine adenylyltransferase; Region:
PPAT; cd02163"
/db_xref="CDD:173914"
misc_feature complement(order(383558..383560,383567..383569,
383579..383581,383621..383623,383633..383635,
383642..383647,383666..383668,383672..383677,
383717..383725,383813..383815,383828..383830,
383876..383878,383885..383890,383906..383920))
/gene="coaD"
/locus_tag="Rmag_0354"
/note="active site"
/db_xref="CDD:173914"
misc_feature complement(383885..383896)
/gene="coaD"
/locus_tag="Rmag_0354"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:173914"
gene complement(383962..384540)
/locus_tag="Rmag_0355"
/db_xref="GeneID:4554837"
CDS complement(383962..384540)
/locus_tag="Rmag_0355"
/note="TIGRFAM: putative methyltransferase;
PFAM: conserved hypothetical protein 95;
KEGG: ilo:IL0225 N6-adenine-specific methylase"
/codon_start=1
/transl_table=11
/product="putative methyltransferase"
/protein_id="YP_903602.1"
/db_xref="GI:118602387"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR004398"
/db_xref="GeneID:4554837"
/translation="MTPIINNSFQIVSGEYQGRKFNFPKTPSLRPTSGKIRETLFNWI
QFESHNKTYLDLFTGSGSLSFEALSRGARQVVSIEQNFNVYQSLKKNKTLLKTNRISI
FNQDALNFLSKKSTQTFDFIFLDPPFNKNYLPKTLKAFSKGNFMTSNTKIYIESEFKI
LKNEAAEWLSTNIQINKQKHTGQVHYCLITPL"
misc_feature complement(<384157..384381)
/locus_tag="Rmag_0355"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(384166..384168,384220..384228,
384301..384306,384355..384375))
/locus_tag="Rmag_0355"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(384521..385051)
/locus_tag="Rmag_0356"
/db_xref="GeneID:4554838"
CDS complement(384521..385051)
/locus_tag="Rmag_0356"
/EC_number="3.6.1.1"
/note="PFAM: Inorganic pyrophosphatase;
KEGG: ilo:IL2263 inorganic pyrophosphatase"
/codon_start=1
/transl_table=11
/product="inorganic diphosphatase"
/protein_id="YP_903603.1"
/db_xref="GI:118602388"
/db_xref="InterPro:IPR008162"
/db_xref="GeneID:4554838"
/translation="MQNSLKPVSAGNVPNEINVIIEIPANSSPIKYEIDKETGAMFVD
RFILTPMFYPCNYGFVPETLADDGDPADVLVITPYPLIHDSVITVRPIGILRMTDEAG
KDSKILAVPIDKSCKSYHNIKCIDDVDVTLKNQIEHFFTYYKDLEEGKWVKIDGWSDS
IEAKKELQNSFDAYHQ"
misc_feature complement(384536..384970)
/locus_tag="Rmag_0356"
/note="Inorganic pyrophosphatase. These enzymes hydrolyze
inorganic pyrophosphate (PPi) to two molecules of
orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers;
Region: pyrophosphatase; cd00412"
/db_xref="CDD:29533"
misc_feature complement(order(384620..384625,384881..384883,
384917..384919,384959..384961))
/locus_tag="Rmag_0356"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29533"
misc_feature complement(order(384740..384742,384755..384757,
384836..384838,384851..384853,384953..384955))
/locus_tag="Rmag_0356"
/note="metal binding sites [ion binding]; metal-binding
site"
/db_xref="CDD:29533"
misc_feature complement(384812..384817)
/locus_tag="Rmag_0356"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29533"
gene complement(385293..385984)
/locus_tag="Rmag_0357"
/pseudo
/db_xref="GeneID:4555489"
gene 386301..386537
/locus_tag="Rmag_0358"
/pseudo
/db_xref="GeneID:4555490"
gene 386548..386691
/locus_tag="Rmag_0359"
/pseudo
/db_xref="GeneID:4555491"
gene 388157..388360
/locus_tag="Rmag_0360"
/pseudo
/db_xref="GeneID:4555492"
gene 389644..391806
/locus_tag="Rmag_0361"
/db_xref="GeneID:4554839"
CDS 389644..391806
/locus_tag="Rmag_0361"
/note="PFAM: ATP-binding region, ATPase domain protein
domain protein; histidine kinase, HAMP region domain
protein; histidine kinase A domain protein domain protein;
KEGG: noc:Noc_3018 signal transduction histidine kinase,
NtrY"
/codon_start=1
/transl_table=11
/product="periplasmic sensor signal transduction histidine
kinase"
/protein_id="YP_903604.1"
/db_xref="GI:118602389"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4554839"
/translation="MIFSQYLSLKKTPPAWVWVFVFLLSISGTFYLGLNPDFIEHWWG
YLVGFNIIMSFVAIYYVYADVLRLKRDVKGGIVGSKFTWSFVKIVPVLVIVPVLSFYI
FSFQTIQNNVKDSEKAFNVFSQNFIQQVNGLYSGVQKIRDERYTEQTKRLLTLITSFG
SFQKDAENYAQSMQIFLDGLIDKGWACQITLLNAQEEVVAKTADVTNCMAIEEQPLPG
TQPRMINEDETANVIQVKMSTRYLSNISNQDLFVVDMVYATDPGLLGFLSQVRGFANA
AQNIKFEINTSITQKRFMIDFSSTVLLAILSALMVVFRMIERLMKPLNNLSIATKEIA
KGNYDVRITKQKESEDVRSLIEQFNTMSRQIKASREGLDTHNLYLETILKYSYGVIAL
DQNRKIRLINPVIGTMLGIEDEKLFFGKKCSTIVDRYSNLEPLFLMTQDKFKRDESEW
SEEIKITLANQHLLLSCQGAALKNDNETLGFVIVIKDISRLNRTQKKAAWGEVAKLMA
HEIKNPLTPILLSAQRLRNRFMDSLEGKDLDVIDKTTNTIIHQVQSMDTMVSAFADYA
NTPQIERKPCDLNMLIKQSIALYDSQSNMNIDFDLFAGIPLLLLDSHSISRVLINLVK
NASEAMIDGRDLNVKIITEYLPKQAIVRLNTIDDGDGFDKYVLDRVFEPYVTTKIKGS
GLGMAIVQNIIKQHEGKIFASNVKPHGAMITIEFNCNK"
misc_feature 389704..391791
/locus_tag="Rmag_0361"
/note="Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms]; Region: NtrY; COG5000"
/db_xref="CDD:34605"
misc_feature 390598..390744
/locus_tag="Rmag_0361"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(390598..390603,390610..390615,390619..390624,
390631..390636,390640..390642,390688..390690,
390694..390696,390700..390705,390712..390717,
390721..390726,390733..390738)
/locus_tag="Rmag_0361"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 391162..391341
/locus_tag="Rmag_0361"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(391162..391164,391174..391176,391183..391185,
391195..391197,391204..391206,391255..391257,
391285..391287,391294..391296,391306..391308,
391315..391317,391327..391329)
/locus_tag="Rmag_0361"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 391168..391170
/locus_tag="Rmag_0361"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 391486..391791
/locus_tag="Rmag_0361"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(391504..391506,391516..391518,391525..391527,
391600..391602,391612..391614,391618..391620,
391624..391629,391690..391701,391747..391749,
391753..391755,391768..391773,391777..391779)
/locus_tag="Rmag_0361"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 391516..391518
/locus_tag="Rmag_0361"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(391618..391620,391624..391626,391690..391692,
391696..391698)
/locus_tag="Rmag_0361"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 391819..392394
/locus_tag="Rmag_0362"
/db_xref="GeneID:4554840"
CDS 391819..392394
/locus_tag="Rmag_0362"
/note="PFAM: response regulator receiver;
helix-turn-helix, Fis-type;
KEGG: pol:Bpro_4433 two component transcriptional
regulator, fis family"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_903605.1"
/db_xref="GI:118602390"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002197"
/db_xref="GeneID:4554840"
/translation="MDRTLAIGRILIIDDENINAETMMDTLEDVNYHVVLAANANQAK
TIVEDQIFDLVMMDVWMPAQDGMSLLEEWTQSGFSTPIVMMSGHAEHQDVVKAIKLGA
VDFLEKPLHDILPLVRKILSEQVLEKSEHTINGIEFNAPLKEARNIFEVQYFNHHLQE
NKHNIAKVAILAGLERTTLYRKLKDLGIDKK"
misc_feature 391846..392367
/locus_tag="Rmag_0362"
/note="Response regulator consisting of a CheY-like
receiver domain and a Fis-type HTH domain [Signal
transduction mechanisms / Transcription]; Region: COG4567"
/db_xref="CDD:34205"
misc_feature 391849..392181
/locus_tag="Rmag_0362"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(391858..391863,391990..391992,392014..392016,
392074..392076,392131..392133,392140..392145)
/locus_tag="Rmag_0362"
/note="active site"
/db_xref="CDD:29071"
misc_feature 391990..391992
/locus_tag="Rmag_0362"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(391999..392004,392008..392016)
/locus_tag="Rmag_0362"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 392140..392148
/locus_tag="Rmag_0362"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature <392290..392376
/locus_tag="Rmag_0362"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 392401..393774
/gene="trkA"
/locus_tag="Rmag_0363"
/gene_synonym="sapG"
/db_xref="GeneID:4554841"
CDS 392401..393774
/gene="trkA"
/locus_tag="Rmag_0363"
/gene_synonym="sapG"
/note="involved in potassium uptake; found to be
peripherally associated with the inner membrane in
Escherichia coli; contains an NAD-binding domain"
/codon_start=1
/transl_table=11
/product="potassium transporter peripheral membrane
component"
/protein_id="YP_903606.1"
/db_xref="GI:118602391"
/db_xref="InterPro:IPR000205"
/db_xref="InterPro:IPR000594"
/db_xref="InterPro:IPR003148"
/db_xref="InterPro:IPR006036"
/db_xref="InterPro:IPR006037"
/db_xref="GeneID:4554841"
/translation="MKILILGAGQVGATLAKYLGSDNDNDITIIDKDESNLSNLQRHL
DIKTICGHASYPNVLEEADIKNMDMMIAVTRSDEGNMLACQMAHTLYQVKKKVARIRT
AEYLHRKELFSPNAIPIDFIITPEELVTNYIKRVVEEPGAEQVFEFENGLVQLVETRA
YAGTPIVGHPIKDLHEHLPKTRVRIVSLYRNGRAIPASGETVIRDGDRVYFMTKKASI
SKVIKQFRREDKTYKNIIIAGGGRIGLNLAKFLEKNHHVRIIEMNKKRVSEIVDELEN
TLVLLGNASDEELLLEEGIENTDLFLALTDFDEINVIVSILAKRLGAHKTVALVKRNV
YEDLAKQSEDVDMVISPDQITVSGILAHIRKGDTMMVYSLRQGKAEAIEIIVHGDKHH
SDVVGKTIEQINLPDGVVVGSVVRNHEVIMGSRTLIIKEGDHVLLVLTDISKIHEVEK
LFERYFD"
misc_feature 392401..393762
/gene="trkA"
/locus_tag="Rmag_0363"
/gene_synonym="sapG"
/note="potassium transporter peripheral membrane
component; Reviewed; Region: trkA; PRK09496"
/db_xref="CDD:181909"
misc_feature 392407..392775
/gene="trkA"
/locus_tag="Rmag_0363"
/gene_synonym="sapG"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:202177"
misc_feature 392863..393078
/gene="trkA"
/locus_tag="Rmag_0363"
/gene_synonym="sapG"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:202105"
misc_feature 393103..393453
/gene="trkA"
/locus_tag="Rmag_0363"
/gene_synonym="sapG"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:202177"
misc_feature 393544..393756
/gene="trkA"
/locus_tag="Rmag_0363"
/gene_synonym="sapG"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:202105"
gene 393787..395235
/locus_tag="Rmag_0364"
/db_xref="GeneID:4554842"
CDS 393787..395235
/locus_tag="Rmag_0364"
/note="TIGRFAM: potassium uptake protein, TrkH family;
PFAM: cation transporter;
KEGG: hch:HCH_00025 trk-type K+ transport system, membrane
components"
/codon_start=1
/transl_table=11
/product="TrkH family potassium uptake protein"
/protein_id="YP_903607.1"
/db_xref="GI:118602392"
/db_xref="InterPro:IPR003445"
/db_xref="InterPro:IPR004772"
/db_xref="GeneID:4554842"
/translation="MQFSIVFKTIGLLLMVFSLTQLPPIVVDFIYAQNEALSFMVAFS
LTLLSGFVLWFPFRNSTKNFRIREGALVVVSFWFVLSLFATTPFLLSVSLDMSFSDAF
FESMSGLTTTGATVLSGLDDLPKALLYYRQQLQWLGGMGIIVLAVAILPMLGVGSMEL
YHAELSGISKERLTPKLTQTAKALWKIYISFTVVCALGYYFAGMNAFDAIGHSYATVA
IGGFSTHDASIGYFNSYAIEMVAMIFMLLAGINFSLHFLVWRKNNLFFYLKDSEFKAY
LLILSASILLVSSYLFDKGYYQTIEESIRYGIFQSISIITTTGFSGTNFSLWPFVLPV
FLIFASFIGACVGSTGGGIKVVRILLMFKLAMKEIKKFIHPNAQINIKLNQKSVPENT
LISVWGFFSLYVIVFVMLMLMLMFTGLDQVSAFSATAASINNLGPGLGDVADNYGNIN
DTAKWILSFSMLLGRLEILTLMALLHKSFWRF"
misc_feature 393787..395229
/locus_tag="Rmag_0364"
/note="Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: TrkG;
COG0168"
/db_xref="CDD:30517"
misc_feature 393787..395229
/locus_tag="Rmag_0364"
/note="Cation transport protein; Region: TrkH; cl10514"
/db_xref="CDD:209160"
gene complement(395257..397314)
/gene="dinG"
/locus_tag="Rmag_0365"
/db_xref="GeneID:4554843"
CDS complement(395257..397314)
/gene="dinG"
/locus_tag="Rmag_0365"
/note="helicase involved in DNA repair and perhaps also
replication"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase DinG"
/protein_id="YP_903608.1"
/db_xref="GI:118602393"
/db_xref="InterPro:IPR006554"
/db_xref="InterPro:IPR006555"
/db_xref="GeneID:4554843"
/translation="MLSNELKAQIRQSFMSLKKNMDGFKVRQTQNRMIAEISKTLSGE
YKGNNNILCIEAPTGTGKTFAYLIGSILIAKANKKKLIISSANVSLQEQLFFKDIPQV
QKYCCIDFEYALVKGRSRYVCIHNLINVCENNTSDNFLFESIPLFDKPPGKYQLEQLN
EMLNDYSTKKWNGEIDDLMRVPDHSIWKKIACNRFTCTTKSCEFYQNCAFFKARQKIT
KADVIVANHDLVLADLSTGNTILPNVNKSIFIFDEAHHLNSKALSHFSLTTSTELIKT
SVKQTKAVSEQLCKISKQDMPDIDIKQIDDYLTNLIQLFKKLEFNDNIYLFNQGIIDK
SINQISENILTLIGAIQTKFMLLKESWDDYLKITVIDKSISDSINNATGECEQHLLSI
IALFSSFLQTDEPNKAPHSRWIEKSTLANKKNSYLLNSAQTNISKNLDQLIWSKVSGA
VLTSATLTSLGSFERLNKQLGLLRNENQYLRLPSPFVFDQVDFIAAKLKASPTQVYEH
TQEVALQLLKRLDSNEGSLVLFASNKQMQIVADLIEKKLDCTLFVQGKYPKKYILEKH
TDLRKQGKGSVIFGLDSFAEGVDLKGDNLTHVIIAKLRFSVPTSPIDKTLATYLESQN
RNPFMEISLPDASLKLIQACGRLIRTETDTGKITIFDNRLVSKFYGKQLLNALPSYNI
IVE"
misc_feature complement(395260..397314)
/gene="dinG"
/locus_tag="Rmag_0365"
/note="ATP-dependent DNA helicase DinG; Provisional;
Region: dinG; PRK11747"
/db_xref="CDD:183295"
misc_feature complement(396517..>396693)
/gene="dinG"
/locus_tag="Rmag_0365"
/note="DEAD_2; Region: DEAD_2; pfam06733"
/db_xref="CDD:191597"
misc_feature complement(395275..395742)
/gene="dinG"
/locus_tag="Rmag_0365"
/note="Helicase C-terminal domain; Region: Helicase_C_2;
pfam13307"
/db_xref="CDD:205487"
gene complement(397319..398290)
/locus_tag="Rmag_0366"
/db_xref="GeneID:4554844"
CDS complement(397319..398290)
/locus_tag="Rmag_0366"
/EC_number="2.5.1.1"
/note="PFAM: Polyprenyl synthetase;
KEGG: ftl:FTL_1041 octaprenyl-diphosphate synthase"
/codon_start=1
/transl_table=11
/product="dimethylallyltranstransferase"
/protein_id="YP_903609.1"
/db_xref="GI:118602394"
/db_xref="InterPro:IPR000092"
/db_xref="GeneID:4554844"
/translation="MKSLSDIQSLLKLDLQKTDEILINRLSSNVALINQMGHYIIHAG
GKRLRPLLLLLCARATEYQGTHHYLMAVVIELIHTATLLHDDIVDESITRRGKDTVNE
VWGNAPSVLVGDFLYSRAFEMMIEPNSMYIIRILSKTTNSIAEGEVLQLLNCKNTELT
ETEYYAVIERKTACLFQAATQIGGLLSGVDKAQESALKDYGLHLGNAFQIIDDVLDYE
SNVKTMGKEVGDDLSEGKTTLPMIYALAHTSGDNRQLLEDAINQADNSKIVQVIKILQ
SIKAFDYTRNQAHKSAQLAKQSLKLIPDSDYKDALILLCDLSLQRQS"
misc_feature complement(397322..398278)
/locus_tag="Rmag_0366"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature complement(397328..398209)
/locus_tag="Rmag_0366"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(397583..397585,397598..397600,
397613..397615,397643..397645,397652..397657,
397766..397768,397775..397780,397841..397843,
397850..397852,398006..398011,398024..398029,
398033..398041,398045..398053,398060..398062))
/locus_tag="Rmag_0366"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(398024..398053)
/locus_tag="Rmag_0366"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(397583..397585,397598..397600,
397613..397615,397643..397645,397652..397657,
397778..397780,397841..397843,398006..398011,
398024..398026,398033..398038))
/locus_tag="Rmag_0366"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(397652..397657,397778..397780,
398006..398011,398024..398026,398033..398038))
/locus_tag="Rmag_0366"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(397778..397780,397841..397843,
398006..398011,398024..398026,398033..398038))
/locus_tag="Rmag_0366"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(397577..397591,397598..397615,
397631..397636,397976..398020))
/locus_tag="Rmag_0366"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(397583..397585,397598..397600,
397613..397615,397643..397645,397652..397657))
/locus_tag="Rmag_0366"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(398346..398969)
/locus_tag="Rmag_0367"
/db_xref="GeneID:4554845"
CDS complement(398346..398969)
/locus_tag="Rmag_0367"
/note="PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ;
KEGG: sde:Sde_2721 ribosomal RNA methyltransferase
RrmJ/FtsJ"
/codon_start=1
/transl_table=11
/product="ribosomal RNA methyltransferase RrmJ/FtsJ"
/protein_id="YP_903610.1"
/db_xref="GI:118602395"
/db_xref="InterPro:IPR002877"
/db_xref="GeneID:4554845"
/translation="MVKKGSSGRWMSEHINDEFVKKAQKSGYRSRSVYKLIEVINKDK
FIKLGDKVLDLGAAPGGWSQVAIKIVGKSGQVIASDILDIKPIDGVDFLRGDFTKDSV
YETLLDITMSKKVDVVLSDMAPNMSGQSSIDIPKSMYLCELALDMAIKTLTPLGYFFV
KVFQGNGFNEFVKLCRSSFSFVTIRKPKASKLRSKEVYLLTSKLKLT"
misc_feature complement(398355..398960)
/locus_tag="Rmag_0367"
/note="23S rRNA methylase [Translation, ribosomal
structure and biogenesis]; Region: FtsJ; COG0293"
/db_xref="CDD:30641"
misc_feature complement(398481..398819)
/locus_tag="Rmag_0367"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(398607..398609,398679..398687,
398727..398732,398787..398807))
/locus_tag="Rmag_0367"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 399040..400857
/locus_tag="Rmag_0368"
/db_xref="GeneID:4554846"
CDS 399040..400857
/locus_tag="Rmag_0368"
/note="TIGRFAM: small GTP-binding protein; GTP-binding
protein TypA;
PFAM: elongation factor G domain protein; protein
synthesis factor, GTP-binding; elongation factor Tu,
domain 2 protein;
KEGG: sec:SC3900 GTP-binding elongation factor family
protein"
/codon_start=1
/transl_table=11
/product="GTP-binding protein TypA"
/protein_id="YP_903611.1"
/db_xref="GI:118602396"
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006298"
/db_xref="GeneID:4554846"
/translation="MNTKLRNIAIIAHVDHGKTTLVDKLLEQSQTFDERFESTDRMMD
SNDLEKERGITISSKNTAIKWHDYHINIVDTPGHSDFGGEVERVLSMVDSVLLLVDAQ
EGPMPQTRFVTKKSFDQGLNPIVVINKIDKDAARPDWVIDQVFDLFDQLGATDEQLDF
PIIYASSINGYASLEDDVRLGDMTPMFETIIKHVKAPEVDINAFLQMQVTALDYSSFI
GTIAIGRITRGTIKKNMQVVVVDTQGNEHKAKIANLQGFLGLERIDTDSAQAGNIIAI
TGIEGISISDTICDPEAIEALPPLSVDEPTISMAFRVNDSPFAGQDGKFITSRNICDR
LEKELIYNVALRVESTTDPSEFIVSGRGELHLSILIETMRRESFELAVGRPQVILREI
DDVICEPFEDLSVDVEAQHQGTVMEKLGERKAELTNMIPDGNGRIKLYFNIPARGLIG
FRTEFLTATTGTGLMNSTFDAYKPQKQGKIGQRSNGSLISMNQGQAVAYAIFNLQKSG
KFFVEHNTDIYEGMVVGIHTRDKDLVINVMKGKQLTNVRASGTDEAISLIPAIKLDLE
QALEFIDDDELVEITPHNIRIRKRLLTENERKRARRKSK"
misc_feature 399049..399630
/locus_tag="Rmag_0368"
/note="Tyrosine phosphorylated protein A (TypA)/BipA
family belongs to ribosome-binding GTPases; Region:
TypA_BipA; cd01891"
/db_xref="CDD:206678"
misc_feature 399052..400836
/locus_tag="Rmag_0368"
/note="GTP-binding protein TypA/BipA; Region: TypA_BipA;
TIGR01394"
/db_xref="CDD:162336"
misc_feature 399073..399096
/locus_tag="Rmag_0368"
/note="G1 box; other site"
/db_xref="CDD:206678"
misc_feature order(399076..399078,399082..399084,399094..399099,
399106..399108,399115..399120,399214..399219,
399271..399276,399343..399348,399454..399456,
399466..399468)
/locus_tag="Rmag_0368"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206678"
misc_feature order(399082..399099,399421..399426,399430..399432,
399535..399543)
/locus_tag="Rmag_0368"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206678"
misc_feature 399181..399216
/locus_tag="Rmag_0368"
/note="Switch I region; other site"
/db_xref="CDD:206678"
misc_feature 399202..399204
/locus_tag="Rmag_0368"
/note="G2 box; other site"
/db_xref="CDD:206678"
misc_feature 399259..399270
/locus_tag="Rmag_0368"
/note="G3 box; other site"
/db_xref="CDD:206678"
misc_feature 399265..399321
/locus_tag="Rmag_0368"
/note="Switch II region; other site"
/db_xref="CDD:206678"
misc_feature 399421..399432
/locus_tag="Rmag_0368"
/note="G4 box; other site"
/db_xref="CDD:206678"
misc_feature 399535..399543
/locus_tag="Rmag_0368"
/note="G5 box; other site"
/db_xref="CDD:206678"
misc_feature 399652..399909
/locus_tag="Rmag_0368"
/note="Translation_Factor_II_like: Elongation factor Tu
(EF-Tu) domain II-like proteins. Elongation factor Tu
consists of three structural domains, this family
represents the second domain. Domain II adopts a beta
barrel structure and is involved in binding to...; Region:
Translation_Factor_II_like; cl02787"
/db_xref="CDD:207732"
misc_feature 400231..400467
/locus_tag="Rmag_0368"
/note="BipA_TypA_C: a C-terminal portion of BipA or TypA
having homology to the C terminal domains of the
elongation factors EF-G and EF-2. A member of the ribosome
binding GTPase superfamily, BipA is widely distributed in
bacteria and plants. BipA is a highly...; Region:
BipA_TypA_C; cd03710"
/db_xref="CDD:58063"
gene 400941..403994
/locus_tag="Rmag_0369"
/db_xref="GeneID:4554847"
CDS 400941..403994
/locus_tag="Rmag_0369"
/note="PFAM: acriflavin resistance protein;
KEGG: lil:LA2439 acriflavine resistance protein homolog"
/codon_start=1
/transl_table=11
/product="acriflavin resistance protein"
/protein_id="YP_903612.1"
/db_xref="GI:118602397"
/db_xref="InterPro:IPR001036"
/db_xref="InterPro:IPR001356"
/db_xref="GeneID:4554847"
/translation="MDNILNFFVKQKKLALVFTVFIIALGLLTLSGIQRDKFPAVDFE
EMSIVTIYPGASPEDVEQNVTNPIEDELRSISGIDKFNSTSKEGKSSIIVTLSQDISD
IESLKQEIRNAVSRIKSLPEEVNDLPWVIDRKNSLKSILKINISSGELSYQALRDITD
DMANSLALVEGVSKVVKEGYLDREIQIKVNPDSLYQHKLSLPQIIEAIKKRNKRYAVG
SNHDYINEKTIVVLAKFDEIQAVGNVIIKSTFDGPIIRLKDVASIVDGNKEETSITRV
NGTKGFILKIRKQENADIITTVDLIKEKVLNLRVKYPTNLQVFYSSDESKHVRNRLNI
VINNGLIGLFLVLIILALFLSLKTAFWVSISLPISLLGTVTLLGATGETINLISLAAM
ILVLGIVVDDSIVMAESIHHYKQLGKDRYQSTVRGFKRVIAPVITTILTTILAFSSMF
LMGGTMGKFIYVIPLVVIFALTLSFLEISLALPAHLASSDEKTKGKIWFACIEDWFEG
FLTKVLKWRYGVVVIFSLVLIGTLYFAKTQMKYVQFPSVGADSISARLQMSVGTSLER
TESISKQVEKMIIEVVGEDLDSLTNNVGHYFTHVAKFTIKLVPFSIRVQTPKALLVQL
KARVKNIKAAQKLKFSIGRPGPPQGEDVEINLVGSDNIQRQNAADSLEKILLNIDGID
NIERDDEPGKTRIEVVIDFEKMARFDVDFSTINDYLKAAFTGINVTNVRYGDDDVDFR
IYLGSDKQSEDFLALLKVNNRQGHPILLKQFISLQKIKGEPNFNHFNGQRSAVLSGSV
DDEITTSSMVVSQALKRLDLANKYPTIRVTSEGGDKDTKKAMDNFKKAFIMAIFVIFL
LLILLFNSYSQPILILIIVPFSIIGVIWAFFFHGETLSFFAILGTLALVGVIVNDSLV
MVAHLNYLKAKFASTMSVYEWVVQGAKDRLRAVVLTTLTTLAGVMPLAYGIGGTDFIL
QPMVLSLGYGLLFGTLITLILLPCLYLINHDLISWVKNFGAGFKI"
sig_peptide 400941..401036
/locus_tag="Rmag_0369"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.641) with cleavage site probability 0.401 at
residue 32"
misc_feature 400947..403865
/locus_tag="Rmag_0369"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
misc_feature <402090..402365
/locus_tag="Rmag_0369"
/note="Protein export membrane protein; Region: SecD_SecF;
cl14618"
/db_xref="CDD:199094"
gene complement(405696..406578)
/locus_tag="Rmag_0370"
/pseudo
/db_xref="GeneID:4555493"
gene complement(408911..409525)
/gene="leuD"
/locus_tag="Rmag_0371"
/db_xref="GeneID:4554567"
CDS complement(408911..409525)
/gene="leuD"
/locus_tag="Rmag_0371"
/EC_number="4.2.1.33"
/note="catalyzes the isomerization between
2-isopropylmalate and 3-isopropylmalate in leucine
biosynthesis; forms a heterodimer of LeuC/D"
/codon_start=1
/transl_table=11
/product="isopropylmalate isomerase small subunit"
/protein_id="YP_903613.1"
/db_xref="GI:118602398"
/db_xref="InterPro:IPR000573"
/db_xref="InterPro:IPR004431"
/db_xref="GeneID:4554567"
/translation="MQKFTTFTSIAIPLERANIDTDAIIPKQFLKSIKRSGFGVNLFD
EWRYLDHGEVGMDNSKRPLNMDFVLNQAKYQGAKILLVRENFGCGSSREHAPWALEDY
GFKAIIAPSFADIFYNNCFKNGILPIVQDNNIMDEFFTLSGEIMINLDAQSIHTNSKT
YFFEIDIERKRRLINGLDDIGLTLQYTDDIKAFEKDYFNKYNWL"
misc_feature complement(409079..409486)
/gene="leuD"
/locus_tag="Rmag_0371"
/note="Aconatase-like swivel domain of 3-isopropylmalate
dehydratase and related uncharacterized proteins.
3-isopropylmalate dehydratase catalyzes the isomerization
between 2-isopropylmalate and 3-isopropylmalate, via the
formation of 2-isopropylmaleate...; Region: IPMI_Swivel;
cd01577"
/db_xref="CDD:73275"
misc_feature complement(409250..409258)
/gene="leuD"
/locus_tag="Rmag_0371"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73275"
gene complement(409525..410958)
/locus_tag="Rmag_0372"
/db_xref="GeneID:4554568"
CDS complement(409525..410958)
/locus_tag="Rmag_0372"
/EC_number="4.2.1.33"
/note="dehydratase component, catalyzes the isomerization
between 2-isopropylmalate and 3-isopropylmalate"
/codon_start=1
/transl_table=11
/product="isopropylmalate isomerase large subunit"
/protein_id="YP_903614.1"
/db_xref="GI:118602399"
/db_xref="InterPro:IPR001030"
/db_xref="InterPro:IPR004430"
/db_xref="GeneID:4554568"
/translation="MSYFIKYCVSIMTQTLYDKLMNAHVIRRDNSTELIYIDRQLIHE
VTSPQAFEGLAIAGRKPWSTSANLAVPDHNVPTTNRSSGINGISDPISKLQIETLDKN
CKTFGINEIPMNDIRQGIVHVVGPEQGFTLPGMSIVCGDSHTSTHGALGALAFGIGTS
EVEHVLATGCLWQSKSKNFNIEVSGKLNKHVSAKDIALYIIGKIGTAGGTGHAIEFSG
DTIQSLSIEGRMTLCNMAIEAGARVGMVAVDDKTIDYVKGRILAPSGAKWSKAVEYWH
TLHSDKNAHFEKIAHFNAKDIKPQVTWGTSPEMVITIDGYIPNPANAKNHTEKVSWEN
ALNYMQLTADIKISDIKIDKVFIGSCTNSRIEDLRIVASVLKDKKIANNIKLALVVPG
SGLIKKQAEKEGLDKIFINSGFEWREAGCSMCLAMNADKLKVGERCISTSNRNFEGRQ
GQGSFTHLVSPAIAAASAITGHFSEVK"
misc_feature complement(409546..410925)
/locus_tag="Rmag_0372"
/note="3-isopropylmalate dehydratase large subunit;
Reviewed; Region: PRK00402"
/db_xref="CDD:179006"
misc_feature complement(409540..410844)
/locus_tag="Rmag_0372"
/note="3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate; Region: IPMI; cd01583"
/db_xref="CDD:153133"
misc_feature complement(order(409612..409614,409627..409629,
409684..409686,410533..410538,410821..410823,
410830..410832))
/locus_tag="Rmag_0372"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:153133"
misc_feature complement(order(409630..409632,409684..409689,
409696..409698,409879..409881,410530..410532))
/locus_tag="Rmag_0372"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:153133"
gene 410980..412755
/locus_tag="Rmag_0373"
/db_xref="GeneID:4554569"
CDS 410980..412755
/locus_tag="Rmag_0373"
/note="TIGRFAM: asparagine synthase
(glutamine-hydrolyzing);
PFAM: glutamine amidotransferase, class-II; asparagine
synthase;
KEGG: tbd:Tbd_0060 asparagine synthase,
glutamine-hydrolyzing"
/codon_start=1
/transl_table=11
/product="asparagine synthase (glutamine-hydrolyzing)"
/protein_id="YP_903615.1"
/db_xref="GI:118602400"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR001962"
/db_xref="InterPro:IPR006426"
/db_xref="GeneID:4554569"
/translation="MCGLCGQLRFDSQVVSGDELKVMMQKIARRGPDSSGLWVDDNIG
FGHQRLAIIDLSNHAHQPMIDKNLGLILIFNGTIYNYQALRQDLTKQGYQFFSHSDTE
VIIKAYHYWGESCVTHLDGMFAFCIWDKIQNQLFIARDRMGIKPLYFNLTNQAFSFAS
NMQALITQGIDKSINPIALQQQLSLHGVVPAPNTIINGVNKIKPATTLTISAKGKVVE
RTYWKPKAIRPKETLTDEQFIQRTHELLTDSVLKRMNAADVPIGVLLSGGLDSSLLVA
LLREAGHENVRTFSIGFENIDDEVGSEFEYSDQIVAQFKTRHEKYVISNSQVLPRLGE
AVSNMSEPMVAQDAVAFYLLSEQVSKHIKVVLSGQGADEAFAGYFWYERMQAQTGSEI
ERFTKHYVDRSYEEYLQTVNQQYHSNNHTETWLHYEFAKASADTFMDKVFRTDITRLV
VDDPVKRVDNMTMAWGLEARVPFMDYKLIEHALSVSPSLKMLNKGKHLLKQIARGLLL
PDSVIDRKKGYFPMPALKYVRGEFLDFMSGILTSSKCINRGVFNQTFIAKIINKPQNY
MTALNGSRLWHLALLEYWLQINIDE"
misc_feature 410980..412737
/locus_tag="Rmag_0373"
/note="asparagine synthase family amidotransferase;
Region: trio_amidotrans; TIGR03104"
/db_xref="CDD:163136"
misc_feature 410983..411648
/locus_tag="Rmag_0373"
/note="Glutamine amidotransferases class-II (GATase)
asparagine synthase_B type. Asparagine synthetase B
catalyses the ATP-dependent conversion of aspartate to
asparagine. This enzyme is a homodimer, with each monomer
composed of a glutaminase domain and a...; Region: AsnB;
cd00712"
/db_xref="CDD:48476"
misc_feature order(410983..410985,411124..411126,411202..411210,
411277..411279)
/locus_tag="Rmag_0373"
/note="active site"
/db_xref="CDD:48476"
misc_feature order(411028..411030,411052..411054,411061..411063,
411070..411084,411121..411123)
/locus_tag="Rmag_0373"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48476"
misc_feature 411709..412548
/locus_tag="Rmag_0373"
/note="The C-terminal domain of Asparagine Synthase B.
This domain is always found associated n-terminal
amidotransferase domain. Family members that contain this
domain catalyse the conversion of aspartate to asparagine.
Asparagine synthetase B catalyzes the...; Region:
Asn_Synthase_B_C; cd01991"
/db_xref="CDD:30178"
misc_feature order(411769..411777,411850..411858,412039..412041,
412078..412086)
/locus_tag="Rmag_0373"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30178"
misc_feature order(411769..411777,411850..411858,412039..412041,
412078..412086)
/locus_tag="Rmag_0373"
/note="Molecular Tunnel; other site"
/db_xref="CDD:30178"
gene 412748..413188
/locus_tag="Rmag_0374"
/db_xref="GeneID:4554570"
CDS 412748..413188
/locus_tag="Rmag_0374"
/note="PFAM: ribonuclease H;
KEGG: ftl:FTL_0854 ribonuclease H"
/codon_start=1
/transl_table=11
/product="ribonuclease H"
/protein_id="YP_903616.1"
/db_xref="GI:118602401"
/db_xref="InterPro:IPR002156"
/db_xref="GeneID:4554570"
/translation="MNKIIIYTDGGCRGNPGIGGWGVWLKYGDYDKKLQGVQQDTTNN
QMELTATIKALEVIKSNDIAIDLFTDSKYVITGISEWIKNWKAKGWKTANKKPVKNID
LWQRLDVLNNQHNVTWHWVKGHSGDKGNDMADALANLAMDKIST"
misc_feature 412754..413134
/locus_tag="Rmag_0374"
/note="RNase HI family found mainly in prokaryotes;
Region: RNase_HI_prokaryote_like; cd09278"
/db_xref="CDD:187702"
misc_feature order(412772..412783,412871..412879,412886..412888,
412955..412957,413105..413107)
/locus_tag="Rmag_0374"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187702"
misc_feature order(412772..412774,412886..412888,412955..412957)
/locus_tag="Rmag_0374"
/note="active site"
/db_xref="CDD:187702"
gene 413698..414022
/locus_tag="Rmag_0375"
/pseudo
/db_xref="GeneID:4555494"
gene 414483..415358
/locus_tag="Rmag_0376"
/db_xref="GeneID:4554571"
CDS 414483..415358
/locus_tag="Rmag_0376"
/note="KEGG: tbd:Tbd_2669 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903617.1"
/db_xref="GI:118602402"
/db_xref="InterPro:IPR008262"
/db_xref="GeneID:4554571"
/translation="MLSKYLLVLIVLFSQVSIAFIPNILQLPELPMFGDFNPNQLRRN
FNKFIGIEPDYAREARMVLQIEDAVLDGEVEYLTLKNKNQVFSIYIQSELDKSKGGVI
ILHNRGQHANWGDLIKPLRVGLAEKGWDTLSVQMPVLDKQAKYYDYVSIFPYAHERIE
AAINFYKQLGIDNIILIGHSCGAHMSMSYIDKFGDDKFSAYVGIGMGATDYKQKMVKP
FPLDKMHIPVLDVFSENDFASVIRLAKFRKVLVEATGNTHSAQLVIENAGHYYQEQGA
AKNLTNQVGIWLDTL"
sig_peptide 414483..414542
/locus_tag="Rmag_0376"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.973) with cleavage site probability 0.973 at
residue 20"
misc_feature 414780..415292
/locus_tag="Rmag_0376"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_5;
pfam12695"
/db_xref="CDD:205024"
gene complement(415821..416183)
/locus_tag="Rmag_0377"
/pseudo
/db_xref="GeneID:4555495"
gene complement(416322..416753)
/locus_tag="Rmag_0378"
/db_xref="GeneID:4554572"
CDS complement(416322..416753)
/locus_tag="Rmag_0378"
/note="PFAM: cyclase/dehydrase;
KEGG: vpa:VP0645 hypothetical protein"
/codon_start=1
/transl_table=11
/product="cyclase/dehydrase"
/protein_id="YP_903618.1"
/db_xref="GI:118602403"
/db_xref="InterPro:IPR005031"
/db_xref="GeneID:4554572"
/translation="MHHISKNAIVTYSCEQMYQLINQVNQYPQFLNWCSDASILKQSN
DQIIASVKINKGVFNQTFTTINTLIPHKKIDMRLKEGPFKYLNGAWIFTKLSSNACKI
ELNLAFNFSSKLVDIAISPIFTSIANSQLDAFVTRAKQVYS"
misc_feature complement(416331..416744)
/locus_tag="Rmag_0378"
/note="Coenzyme Q-binding protein COQ10p and similar
proteins; Region: COQ10p_like; cd07813"
/db_xref="CDD:176855"
misc_feature complement(order(416352..416354,416361..416369,
416373..416381,416385..416399,416430..416432,
416436..416438,416442..416444,416448..416450,
416478..416480,416484..416486,416490..416495,
416526..416528,416532..416534,416550..416552,
416556..416558,416562..416564,416595..416597,
416601..416603,416607..416609,416613..416615,
416643..416645,416688..416693,416697..416705,
416730..416732,416736..416738,416742..416744))
/locus_tag="Rmag_0378"
/note="putative coenzyme Q binding site [chemical
binding]; other site"
/db_xref="CDD:176855"
gene 416752..417249
/gene="smpB"
/locus_tag="Rmag_0379"
/db_xref="GeneID:4554573"
CDS 416752..417249
/gene="smpB"
/locus_tag="Rmag_0379"
/note="binds to ssrA RNA (tmRNA) and is required for its
successful binding to ribosomes; also appears to function
in the trans-translation step by promoting accommodation
of tmRNA into the ribosomal A site; SmpB protects the
tmRNA from RNase R degradation in Caulobacter crescentus;
both the tmRNA and SmpB are regulated in cell
cycle-dependent manner; functions in release of stalled
ribosomes from damaged mRNAs and targeting proteins for
degradation"
/codon_start=1
/transl_table=11
/product="SsrA-binding protein"
/protein_id="YP_903619.1"
/db_xref="GI:118602404"
/db_xref="InterPro:IPR000037"
/db_xref="GeneID:4554573"
/translation="MAKNNKKIKTSLNIIALNKKARHNYFIEQTLEAGLSLEGWEVKS
LRDSKVQIKESYVILKNNELFLFGAHISPLKSVSTHVNSDSTRTRKLLLNRLEINRIK
DNINQKGATIVPLKLYWARGKVKLEIGMAKGKKSHDKRQDIKLKDWQRDKQRTLKETN
KIFNF"
misc_feature 416803..417153
/gene="smpB"
/locus_tag="Rmag_0379"
/note="Small protein B (SmpB) is a component of the
trans-translation system in prokaryotes for releasing
stalled ribosome from damaged messenger RNAs; Region:
SmpB; cd09294"
/db_xref="CDD:187755"
misc_feature order(416845..416862,416866..416871,416875..416880,
416887..416889,416938..416940,417025..417042,
417124..417126)
/gene="smpB"
/locus_tag="Rmag_0379"
/note="SmpB-tmRNA interface; other site"
/db_xref="CDD:187755"
gene 417438..417713
/locus_tag="Rmag_0380"
/db_xref="GeneID:4554574"
CDS 417438..417713
/locus_tag="Rmag_0380"
/note="PFAM: histone family protein DNA-binding protein;
KEGG: mca:MCA0532 DNA-binding protein HU-beta"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_903620.1"
/db_xref="GI:118602405"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:4554574"
/translation="MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQL
TGFGSFVVRNRAARTGRNPQTGATIQIKASKVAAFKAGKALKEAVNK"
misc_feature 417441..417701
/locus_tag="Rmag_0380"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(417441..417446,417453..417455,417462..417464,
417474..417476,417516..417518,417525..417530,
417537..417542,417552..417566,417573..417578,
417591..417593,417657..417662,417672..417674,
417678..417680,417699..417701)
/locus_tag="Rmag_0380"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(417441..417449,417513..417515,417558..417560,
417564..417566,417570..417575,417582..417584,
417594..417596,417600..417605,417609..417611,
417618..417629,417657..417659,417669..417671,
417675..417677,417684..417686)
/locus_tag="Rmag_0380"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 417809..418234
/locus_tag="Rmag_0381"
/db_xref="GeneID:4554575"
CDS 417809..418234
/locus_tag="Rmag_0381"
/EC_number="2.7.4.6"
/note="PFAM: nucleoside diphosphate kinase;
KEGG: mfa:Mfla_1624 nucleoside-diphosphate kinase"
/codon_start=1
/transl_table=11
/product="nucleoside diphosphate kinase"
/protein_id="YP_903621.1"
/db_xref="GI:118602406"
/db_xref="InterPro:IPR001564"
/db_xref="GeneID:4554575"
/translation="MERTLSIIKPDAVAKNIIGQIYSRFEEAGFKIVASKMIHLDNYL
AGGFYAVHKNRPFYGELIEFMTSGPVMVQVLEGENVVVRHREIMGTTNPKEADSGTIR
ADFAKSLDENAVHGSDSLENAAIEIEYFFGKDGVFPRTR"
misc_feature 417812..418201
/locus_tag="Rmag_0381"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:58528"
misc_feature order(417833..417835,417953..417955,417977..417979,
418061..418063,418079..418081,418112..418114,
418142..418144,418151..418153,418157..418162,
418184..418186)
/locus_tag="Rmag_0381"
/note="active site"
/db_xref="CDD:58528"
misc_feature order(417845..417847,417860..417868,417875..417877,
417884..417886,417911..417919)
/locus_tag="Rmag_0381"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:58528"
gene 418283..419353
/locus_tag="Rmag_0382"
/db_xref="GeneID:4554576"
CDS 418283..419353
/locus_tag="Rmag_0382"
/note="TIGRFAM: radical SAM enzyme, Cfr family;
PFAM: Radical SAM domain protein;
KEGG: lpp:lpp1504 hypothetical protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_903622.1"
/db_xref="GI:118602407"
/db_xref="InterPro:IPR004383"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:4554576"
/translation="MNKKNLLSFNQNALNDFFVGLGEKPYRTKQIMQWIYKDHEFDFE
KMLNFSKSLRDELSKVVCVELLRVVKQNFILDGVIKWVLALDKNNHIEMIYIPEKNRG
TLCISSQVGCGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRYLNSKTKRISNVVFMG
MGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTPVSLAVSLH
ASDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANK
LVKLLKGISAKINLIPFNSFEKTQYQTSSAQTIEKFQNILYHQGIRTMTRRTRGEDIG
GACGQLAGKVLDKTKRTYDRRH"
misc_feature 418289..419350
/locus_tag="Rmag_0382"
/note="ribosomal RNA large subunit methyltransferase N;
Provisional; Region: PRK11194"
/db_xref="CDD:183031"
misc_feature 418613..419197
/locus_tag="Rmag_0382"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(418616..418618,418622..418624,418628..418630,
418634..418642,418760..418762,418766..418771,
418862..418870,418928..418930,419066..419068,
419156..419161)
/locus_tag="Rmag_0382"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 419337..419642
/locus_tag="Rmag_0383"
/db_xref="GeneID:4554577"
CDS 419337..419642
/locus_tag="Rmag_0383"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903623.1"
/db_xref="GI:118602408"
/db_xref="GeneID:4554577"
/translation="MIEGIDYYPKKRNKKLKLKWWILLILAFMISIFWYLNQKYDTKK
IKEAPILIIISKGEKEQKEITSTVIIDNHSSLDSDSNKKIINPKALDEAIYNYIKKN"
gene 419642..420718
/gene="ispG"
/locus_tag="Rmag_0384"
/db_xref="GeneID:4554578"
CDS 419642..420718
/gene="ispG"
/locus_tag="Rmag_0384"
/EC_number="1.17.7.1"
/note="catalyzes the conversion of 2C-methyl-D-erythritol
2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl
diphosphate; involved in isoprenoid synthesis"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase"
/protein_id="YP_903624.1"
/db_xref="GI:118602409"
/db_xref="InterPro:IPR004588"
/db_xref="GeneID:4554578"
/translation="MKPVYIIQRRKSKQVFVGDVAIGGDAPISVQSMTNTETTDVKAT
VAQIQAIQNAGADLVRVSVPTIDAAEAFKIIKKQVNIPLISDIHFDYKIALKVAEYGA
DCLRINPGNIGREDRIREVVAAAIDHNIPIRIGVNAGSLEKDLQKKYTEPTPEAMVES
AFRQIDILDKLNFDNFKISLKASEIFMTVFAYQQLASQIDNPLHLGITEAGSLRFGTI
KSSIGLGLLLSEGIGDTIRISLASDPVDEVRVGFDILKSLNLRSKGVNLIACPSCSRQ
KFDVIKIVNELESRLEGITAPIDVAVIGCVVNGPGEAKAVSVGLIGGEPNLLYLDGKT
HSKITNENLVNELEAQVRNRLKSP"
misc_feature 419642..420709
/gene="ispG"
/locus_tag="Rmag_0384"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Reviewed; Region: ispG; PRK00366"
/db_xref="CDD:178989"
misc_feature 419642..>420409
/gene="ispG"
/locus_tag="Rmag_0384"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
misc_feature <420371..420682
/gene="ispG"
/locus_tag="Rmag_0384"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
gene complement(420705..421199)
/locus_tag="Rmag_0385"
/db_xref="GeneID:4554579"
CDS complement(420705..421199)
/locus_tag="Rmag_0385"
/note="KEGG: cps:CPS_2123 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903625.1"
/db_xref="GI:118602410"
/db_xref="GeneID:4554579"
/translation="MKKLLKRYSPNPDELKNHKHLGWLGKHLHHSSLWNFNRKSISKA
FAIGLFCAFIPIPFQMLLAAPIAVISSANLPLSIALVWITNPITMPVIFYGCYKLGSW
ILDVSIEKDLVMSLEYVWQVFNVIWQPFLLGCLIVSIVSSVLSYLLIQFIYRYKVYKR
VKGF"
sig_peptide complement(421008..421199)
/locus_tag="Rmag_0385"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.945) with cleavage site probability 0.943 at
residue 64"
misc_feature complement(420714..421097)
/locus_tag="Rmag_0385"
/note="Uncharacterized protein conserved in bacteria
(DUF2062); Region: DUF2062; pfam09835"
/db_xref="CDD:204326"
gene complement(421196..422998)
/locus_tag="Rmag_0386"
/db_xref="GeneID:4554580"
CDS complement(421196..422998)
/locus_tag="Rmag_0386"
/EC_number="2.2.1.7"
/note="TIGRFAM: deoxyxylulose-5-phosphate synthase;
PFAM: Transketolase, central region; Transketolase domain
protein;
KEGG: mca:MCA0817 1-deoxy-D-xylulose-5-phosphate synthase"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose-5-phosphate synthase"
/protein_id="YP_903626.1"
/db_xref="GI:118602411"
/db_xref="InterPro:IPR005474"
/db_xref="InterPro:IPR005475"
/db_xref="InterPro:IPR005476"
/db_xref="InterPro:IPR005477"
/db_xref="GeneID:4554580"
/translation="MLNSITSPLDIKQLDIAKLQSLAEEVRTFLIESIQKTGGHLAPN
LGTIEMTIATHYVFDTPNDSFVFDVGHQAYTHKILTGRFDKMHTLRQKGGLSGFTKRS
ESKHDSFGAGHSSTSISAALGIAIGNGINNNNSKSIAMIGDGALTGGMSFEALNHAGD
SDADLLIILNDNDMSISKNVGAMNKYLTKLISGKVYSIMKSKSLGFLEKMPKIHKFAK
RSEEHLKGMVLPSTLFEELGLDYFGPIDGHDLPTLIQTLQNLKQQTKPRLLHIITKKG
YGLKTAENDPCKFHSVSPISSNSSNLPSYSTVFGVWLNNTALHHKNLIAITPAMCTGS
GMSEFKKNYPKQYFDVGIAEQHAITFAGGLATQGLKPIIAIYSTFLQRGYDQLIHDIA
LQNLNVIFAIDRAGLVGSDGATHAGSFDLSFLRCIPNLTIMVPSNAMQMYQMFNTAFE
TNGTICIRYPKGTSDIKNYITDEKIPLGKAKIILEGSNVAIFAFGIMVKSALTAGKKL
NATVVDMRFVKPLDKALIIKLASSHTKLISIEDNVIIGGAGSAISELLHQKNINTPLS
ILGLQDKFSEQGEQQELYDLYELNEIGIINAVHS"
misc_feature complement(421199..422998)
/locus_tag="Rmag_0386"
/note="1-deoxy-D-xylulose-5-phosphate synthase;
Provisional; Region: PRK05444"
/db_xref="CDD:180086"
misc_feature complement(422162..422887)
/locus_tag="Rmag_0386"
/note="Thiamine pyrophosphate (TPP) family, DXS subfamily,
TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate
synthase (DXS) is a regulatory enzyme of the
mevalonate-independent pathway involved in terpenoid
biosynthesis. Terpeniods are plant natural products...;
Region: TPP_DXS; cd02007"
/db_xref="CDD:73294"
misc_feature complement(order(422477..422479,422483..422485,
422564..422575,422657..422659))
/locus_tag="Rmag_0386"
/note="TPP-binding site; other site"
/db_xref="CDD:73294"
misc_feature complement(421616..422077)
/locus_tag="Rmag_0386"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature complement(order(421643..421645,421706..421711,
421757..421759,421766..421768,421841..421846,
421853..421855,421907..421915,421919..421924,
421931..421948,421952..421954,421961..421963,
422012..422014,422030..422032,422036..422038))
/locus_tag="Rmag_0386"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(421715..421717,421721..421726,
421730..421735,421760..421762,421766..421768,
421847..421849,421853..421858,421937..421945,
421952..421954,422012..422014))
/locus_tag="Rmag_0386"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(421853..421855,421862..421864,
421937..421939,421943..421945))
/locus_tag="Rmag_0386"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(421241..421567)
/locus_tag="Rmag_0386"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene complement(423060..424433)
/locus_tag="Rmag_0387"
/db_xref="GeneID:4554581"
CDS complement(423060..424433)
/locus_tag="Rmag_0387"
/note="PFAM: peptidase U32;
KEGG: son:SO1252 peptidase, U32 family"
/codon_start=1
/transl_table=11
/product="peptidase U32"
/protein_id="YP_903627.1"
/db_xref="GI:118602412"
/db_xref="InterPro:IPR001539"
/db_xref="GeneID:4554581"
/translation="MIKYTTMKKPELLSPAGSLKHMRYAYAYGADAIYAGQPRYSLRV
RNNSFDSKTLERGILEAHANNKKFFVASNIIPHNSKIKTYMKDIEPIVNLNPDALIMA
DPGLIMMVKEKFPNQVIHLSVQANAINYATVKFWKNVDINRIILSRELSLDEVKEIRQ
ECPDIELEVFVHGALCIAYSGRCLLSGYFNHRDPNQGSCTNSCRWKYDVKQAEETLEG
DIKAVEIKTSENQIVLLEEQSRPGELMPAFEDEHGTYIMNSKDLRAVEHVHTLTAIGI
DSLKIEGRTKSHYYAARTAQVYRQAIDDAVAGHEFNKDAFGVLENLANRGYTDGFYQR
HQPEELQTYFDNYSRSNKQQVVGEILDYKDGKAFIEAKNKFSVGDSIEVILPNGCFNT
TIKSMLTEHNEVLNVAKGSGYRVWIPMRDIKPELGFIARNFDEKIKIKNKNIQKDPLL
KIRRPSW"
misc_feature complement(423132..424415)
/locus_tag="Rmag_0387"
/note="putative protease; Provisional; Region: PRK15452"
/db_xref="CDD:185349"
misc_feature complement(423429..424193)
/locus_tag="Rmag_0387"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:201619"
gene 424463..425062
/locus_tag="Rmag_0388"
/db_xref="GeneID:4554582"
CDS 424463..425062
/locus_tag="Rmag_0388"
/note="PFAM: methyltransferase small;
KEGG: tcx:Tcr_0213 methyltransferase small"
/codon_start=1
/transl_table=11
/product="methyltransferase small"
/protein_id="YP_903628.1"
/db_xref="GI:118602413"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR007848"
/db_xref="GeneID:4554582"
/translation="MRRDMFTKKDIPRLKQDLTIQTNLLGIDLTLKTRWGVFSPRSID
DGTELFMKHLRISNDDKCLDLGCGYGPIGLAVAKSCPQGEVHMVDKDFVAVELSNINV
KLNHINNAQAYLSNAFLSVNKTNYFDKILSNVPAKVGREQLSIILYDAYDALKPNGKI
MFVSINGLRHFIKDNFKSVFGNYKKLKQGQKYTISQAIK"
misc_feature 424628..425038
/locus_tag="Rmag_0388"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature 424643..424951
/locus_tag="Rmag_0388"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(424655..424675,424727..424732,424805..424813,
424859..424861)
/locus_tag="Rmag_0388"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 425113..425442
/locus_tag="Rmag_0389"
/db_xref="GeneID:4554583"
CDS 425113..425442
/locus_tag="Rmag_0389"
/note="TIGRFAM: glutaredoxin-like protein;
PFAM: glutaredoxin;
KEGG: tbd:Tbd_2499 glutaredoxin-related protein"
/codon_start=1
/transl_table=11
/product="glutaredoxin-like protein"
/protein_id="YP_903629.1"
/db_xref="GI:118602414"
/db_xref="InterPro:IPR002109"
/db_xref="InterPro:IPR004480"
/db_xref="GeneID:4554583"
/translation="MDVMDRIQQQVDSAAIILYMKGTPQFPQCGFSATAARTLASTGV
EFTYVNIFEDQEVFQSLPVFADWPTFPQIYFNSELVGGGDIIVEMADMGTLKGEMEKA
SEKFDTK"
misc_feature 425131..425400
/locus_tag="Rmag_0389"
/note="Glutaredoxin (GRX) family, PKC-interacting cousin
of TRX (PICOT)-like subfamily; composed of PICOT and
GRX-PICOT-like proteins. The non-PICOT members of this
family contain only the GRX-like domain, whereas PICOT
contains an N-terminal TRX-like domain...; Region:
GRX_PICOT_like; cd03028"
/db_xref="CDD:48577"
misc_feature order(425173..425175,425197..425205,425317..425322)
/locus_tag="Rmag_0389"
/note="putative GSH binding site [chemical binding]; other
site"
/db_xref="CDD:48577"
misc_feature order(425197..425199,425206..425208)
/locus_tag="Rmag_0389"
/note="catalytic residues [active]"
/db_xref="CDD:48577"
gene 425718..426355
/locus_tag="Rmag_0390"
/pseudo
/db_xref="GeneID:4555496"
gene complement(426387..427046)
/locus_tag="Rmag_0391"
/db_xref="GeneID:4554584"
CDS complement(426387..427046)
/locus_tag="Rmag_0391"
/note="PFAM: protein of unknown function DUF45;
KEGG: chy:CHY_0833 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903630.1"
/db_xref="GI:118602415"
/db_xref="InterPro:IPR002725"
/db_xref="GeneID:4554584"
/translation="MIQLMKYQLIRSKRKTLSLQISDNAELLIRTPNRLSIKKIESFI
REKQHWIEKKQALIKNTKRKMHYHEDEDLLYLGNTYPLKLIHMQKPQIHFDGTNFYLS
GDGKTHFHTWYKNTFRNIALPRLDYYADLHQLNYKKVYLKAQKTKWGSCSHVNNINLN
YLLIMAPMNVIDYVIVHELAHIKHKHHQSEFWQLVKSILPNYHQAKNWLKEQGHQLRR
L"
misc_feature complement(426414..427004)
/locus_tag="Rmag_0391"
/note="Protein of unknown function DUF45; Region: DUF45;
pfam01863"
/db_xref="CDD:145171"
gene complement(427440..431264)
/locus_tag="Rmag_0392"
/db_xref="GeneID:4554585"
CDS complement(427440..431264)
/locus_tag="Rmag_0392"
/EC_number="6.3.5.3"
/note="catalyzes the formation of
2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from
N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and
L-glutamine in purine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine synthase"
/protein_id="YP_903631.1"
/db_xref="GI:118602416"
/db_xref="InterPro:IPR000728"
/db_xref="InterPro:IPR010073"
/db_xref="InterPro:IPR010918"
/db_xref="GeneID:4554585"
/translation="MIKTIQHIQALSDFKQDMLNKKIARLGVKLINTEFVHFVNYESL
LTDNEVITLEELLSYGSYVEITNDMQIIIIPRLGTISPWSSKASDILHLCGLEKVHRI
ERGVIYHLDKKITDKKAILSIIMDKMTESELSSIDDAHLIFDNFEPRLLANINILAEG
KSILERINIELGLALSSGDINYLVDSFTKLKRNSTDIELMMFAQANSEHCRHKIFNAD
WMINGKSQVKSLFSMIRNTYHQHPEGLLSVYSDNSAVMAGYQGERFYANTKGKYVTSK
EHRAILMKVETHNHPTAIAPHSGAATGSGGEIRDEGATGQGSKPKVGLCGFSVSNLNI
KNAQQPWEINYGKPNKIKSALDIMLEGPIGTASFNNEFGRPNTLGYFRTFEQKTPNGD
VRGYHKPIMLAGGLGHIQEQHIKKGNIPVGSKIIVLGGPAMLIGLGGGTASSIKSGEQ
NEDLDFTSVQRANPEMQRRAQEVIDSCTNMGKDNPIVSIHDIGAGGLSNGLPELVNDS
ARGGRFQLRAIPNDDFKMSPLEIWCNESQERYVLAIEEKNLKIFTDICTRERAPFAVL
GESTKEQVLILNDELFDNNPINIPMDVLLGNPPKISINVRSESDHLNALNTNNITIDD
GISRLLQLPTIASKNFLITIGDRSVTGLVARDQFIGPWQVPVADCAISLADYTNYQGE
IMSLGEKTPLALCNAESAARMTIGEALTNILGGFVEDIHHISLSANWMSANGHTNEDA
KLFSAVKAIGMDLCPELGLTVPVGKDSMSMKTSWQEQGEDKSVTAPLSLIITAFSKTP
DVRLQLTPLLETDQDSELLLIDLGFGKNRMGGSCLAQVYNQVGKDAPNLDDASVFKNF
FTVINQFNKEGLISAYHDRSDGGVITTLMEMAFASHCGLNITSNGKIEDLFNEELGCV
IQVKAKNKQTVTNLLNYVGLSNCTHKIASINHTDTIEIIVNDKIIYNKPRAKLQSLWS
TTSFEIAKLRDKPNCAEQEFNNIAHNTPGIKINPSFDINKSVSAPYILSSVKPKIAIL
REQGINGQIEMSAAFTKAEFDAIDVHMSDILSDKVFLADFKGLVACGGFSYGDVLGAG
RGWASSILYNERTKDEFEAFFSRKDSFAFGVCNGCQMMSNLTDIIPGSSHWPSFHRNV
SEQFEARFSSVKIKQSNSIFLKDMAGSIMPIAIAHSEGRASFAPKMDKNHSIMQYVDH
GGKPTQNYPHNPNGSDFATAGVTSKSGQVTIMMPHPERVFRTVQNSHYPKNWHERSPW
MRIFENARAWVD"
misc_feature complement(427443..431261)
/locus_tag="Rmag_0392"
/note="phosphoribosylformylglycinamidine synthase;
Provisional; Region: PRK05297"
/db_xref="CDD:179999"
misc_feature complement(429498..430673)
/locus_tag="Rmag_0392"
/note="PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP; Region:
PurL_repeat1; cd02203"
/db_xref="CDD:100034"
misc_feature complement(order(430053..430055,430065..430070,
430125..430127,430281..430283,430290..430292,
430299..430301,430335..430337,430410..430412,
430416..430427))
/locus_tag="Rmag_0392"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100034"
misc_feature complement(order(430125..430133,430335..430337,
430347..430349))
/locus_tag="Rmag_0392"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100034"
misc_feature complement(428442..429263)
/locus_tag="Rmag_0392"
/note="PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP; Region:
PurL_repeat2; cd02204"
/db_xref="CDD:100035"
misc_feature complement(order(428889..428891,428901..428906,
428970..428972,429075..429077,429084..429086,
429093..429095,429132..429134,429207..429209,
429213..429224))
/locus_tag="Rmag_0392"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100035"
misc_feature complement(order(428970..428978,429132..429134,
429144..429146))
/locus_tag="Rmag_0392"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100035"
misc_feature complement(427455..428186)
/locus_tag="Rmag_0392"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in Formylglycinamide ribonucleotide
amidotransferase; Region: GATase1_FGAR_AT; cd01740"
/db_xref="CDD:153211"
misc_feature complement(order(427539..427550,427554..427556,
427722..427727,427893..427895,427905..427907,
428016..428018,428028..428033))
/locus_tag="Rmag_0392"
/note="putative active site [active]"
/db_xref="CDD:153211"
misc_feature complement(order(427542..427544,427548..427550,
427905..427907))
/locus_tag="Rmag_0392"
/note="catalytic triad [active]"
/db_xref="CDD:153211"
gene complement(431273..431974)
/locus_tag="Rmag_0393"
/pseudo
/db_xref="GeneID:4555557"
gene complement(432600..433340)
/locus_tag="Rmag_0394"
/db_xref="GeneID:4555625"
CDS complement(432600..433340)
/locus_tag="Rmag_0394"
/note="PFAM: protein of unknown function DUF28;
KEGG: ilo:IL1088 uncharacterized conserved enzyme"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903632.1"
/db_xref="GI:118602417"
/db_xref="InterPro:IPR002876"
/db_xref="GeneID:4555625"
/translation="MAGHSKWHNIQHRKGAQDAKRGKIFTKLIKEIVISAKIGGGRIE
NNHSLKIIIDKALAVNMRRNTIENAVKRGNGDFDGNNYEKIRYEGYSLGGTAIMVDCL
SDNRNRTISDIRHAFLKHGGNLGRDGSVSYLFTKQGFISFDTGNENQIMEIALDEGAQ
DIITNDDDSIDVITTPEDFFTIKDVLTTSGLEPSHAEVTMEPASRVELNLSDAEKFMK
LIDHLEDLDETKKIYHNADISDKVMVRL"
misc_feature complement(432603..433340)
/locus_tag="Rmag_0394"
/note="hypothetical protein; Validated; Region: PRK00110"
/db_xref="CDD:178871"
gene complement(433379..434329)
/locus_tag="Rmag_0395"
/db_xref="GeneID:4555626"
CDS complement(433379..434329)
/locus_tag="Rmag_0395"
/note="3 different subfamilies; catalyzes the formation of
quinolinate from iminoaspartate and dihydroxyacetone
phosphate"
/codon_start=1
/transl_table=11
/product="quinolinate synthetase"
/protein_id="YP_903633.1"
/db_xref="GI:118602418"
/db_xref="InterPro:IPR003473"
/db_xref="GeneID:4555626"
/translation="MLSTQEQIKTELKTHNAVLVAHYYVDAKLQTLAEATGGIVSDSL
EMARFSQNCDAHTIIIAGVKFMGETAKILSPEKRVLVLNSHATCSLDEDCPIDQFSEL
CDQHPDRIVVVYANTSAQVKARADWVVTSSSALNVVKHLKDNGEKILWAPDKHLGHYV
QTQTNANMLLWQGACVVHERFKADALKVLKTLHPEAAVLVHPESPQSVVNLADVVGST
SALIDAVKNRPETTFIVATDNGIFHKMHEVAPNKKLIEAPTMGEGADCESCAHCEWMA
MNTLENCLNTLQIGNNEIFINTDICKKAKNAIQKLLDFTV"
misc_feature complement(433385..434317)
/locus_tag="Rmag_0395"
/note="quinolinate synthetase; Provisional; Region:
PRK09375"
/db_xref="CDD:181808"
gene complement(434336..436087)
/gene="aspS"
/locus_tag="Rmag_0396"
/db_xref="GeneID:4555627"
CDS complement(434336..436087)
/gene="aspS"
/locus_tag="Rmag_0396"
/EC_number="6.1.1.12"
/note="catalyzes a two-step reaction, first charging an
aspartate molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; contains discriminating
and non-discriminating subtypes"
/codon_start=1
/transl_table=11
/product="aspartyl-tRNA synthetase"
/protein_id="YP_903634.1"
/db_xref="GI:118602419"
/db_xref="InterPro:IPR002312"
/db_xref="InterPro:IPR004115"
/db_xref="InterPro:IPR004364"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004524"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:4555627"
/translation="MRTHFCGELNKDNIGQTVEIYGWVNRRRDHGGVIFLDMRDKHGI
AQVVINPDNADFSLAETVRNEFVLKITGTIIARGEGLTNPKLSTGKIEIKAQNIEILN
TSKPVPFQIDATDTSEEVRLRYRYLDLRSDTMQNRLRLRSRVTRYMREFMDEHDFLDI
ETPFLTKATPEGARDYLVPSRTHSGKFFALPQSPQLFKQLLMMSGFERYYQIVKCFRD
EDLRADRQPEFTQLDVETSFMSENEIMTMMEKMTRGLFKLVINVDLGDNFPTITYADS
MAKYGLDRPDMRISMQIVSIDKIMQGVDFKVFSGPANYDDSRVAALKVPNGASISRKN
IDKYTKYVSIYGAKGLAYIKLNKNGPASPILKFLGDEVIAKVIEMTDAKTGDIIFFGA
DKSKIVNEALGNLREQLAKDLDLFDTQWAPIWVVDFPMFEVGDDGSLNTTHHPFTAPS
VDAKTLEKTATTALSKAYDLVINGSEVGGGSIRIHQIDMQKTVLKLLGISDQEIQDKF
GFFLNALEYGCPPHGGMAFGLDRLMMIMTGANSIRDVVAFPKTQTAACLLTDTPTSIS
RKLLRELSVKINLPEKD"
misc_feature complement(434345..436087)
/gene="aspS"
/locus_tag="Rmag_0396"
/note="aspartyl-tRNA synthetase; Validated; Region: aspS;
PRK00476"
/db_xref="CDD:179042"
misc_feature complement(435728..436084)
/gene="aspS"
/locus_tag="Rmag_0396"
/note="EcAspRS_like_N: N-terminal, anticodon recognition
domain of the type found in Escherichia coli aspartyl-tRNA
synthetase (AspRS), the human mitochondrial (mt) AspRS-2,
the discriminating (D) Thermus thermophilus AspRS-1, and
the nondiscriminating (ND)...; Region: EcAspRS_like_N;
cd04317"
/db_xref="CDD:58587"
misc_feature complement(order(435773..435778,435782..435784,
435965..435967,436019..436021,436073..436075,
436082..436084))
/gene="aspS"
/locus_tag="Rmag_0396"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58587"
misc_feature complement(order(435764..435766,435812..435814,
435839..435841,435857..435859,435899..435901,
435950..435952,435983..435985,435998..436006,
436010..436012))
/gene="aspS"
/locus_tag="Rmag_0396"
/note="anticodon binding site; other site"
/db_xref="CDD:58587"
misc_feature complement(<435239..435676)
/gene="aspS"
/locus_tag="Rmag_0396"
/note="Asp tRNA synthetase (aspRS) class II core domain.
Class II assignment is based upon its structure and the
presence of three characteristic sequence motifs. AspRS is
a homodimer, which attaches a specific amino acid to the
3' OH group of ribose of the...; Region: AspRS_core;
cd00777"
/db_xref="CDD:73228"
misc_feature complement(order(435359..435361,435374..435376,
435404..435406,435434..435436,435446..435448,
435464..435469,435476..435481,435524..435535,
435545..435559,435566..435568,435587..435607,
435611..435622,435629..435631,435638..435643,
435650..435652,435659..435667))
/gene="aspS"
/locus_tag="Rmag_0396"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73228"
misc_feature complement(435587..435601)
/gene="aspS"
/locus_tag="Rmag_0396"
/note="motif 1; other site"
/db_xref="CDD:73228"
misc_feature complement(order(435395..435397,435401..435403,
435410..435418,435431..435433,435437..435439,
435494..435496,435503..435505,435509..435511,
435569..435577))
/gene="aspS"
/locus_tag="Rmag_0396"
/note="active site"
/db_xref="CDD:73228"
misc_feature complement(435431..435442)
/gene="aspS"
/locus_tag="Rmag_0396"
/note="motif 2; other site"
/db_xref="CDD:73228"
misc_feature complement(434882..435166)
/gene="aspS"
/locus_tag="Rmag_0396"
/note="GAD domain; Region: GAD; pfam02938"
/db_xref="CDD:145868"
misc_feature complement(434432..>434830)
/gene="aspS"
/locus_tag="Rmag_0396"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature complement(order(434495..434497,434504..434509,
434513..434518,434645..434647,434657..434662))
/gene="aspS"
/locus_tag="Rmag_0396"
/note="active site"
/db_xref="CDD:29813"
misc_feature complement(order(434495..434497,434504..434506))
/gene="aspS"
/locus_tag="Rmag_0396"
/note="motif 3; other site"
/db_xref="CDD:29813"
gene complement(436092..436694)
/locus_tag="Rmag_0397"
/db_xref="GeneID:4555628"
CDS complement(436092..436694)
/locus_tag="Rmag_0397"
/note="PFAM: protein of unknown function DUF502;
KEGG: mfa:Mfla_2385 protein of unknown function DUF502"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903635.1"
/db_xref="GI:118602420"
/db_xref="InterPro:IPR007462"
/db_xref="GeneID:4555628"
/translation="MKRLRNYFISGLLFWIPLGLSIVVIKFFLELVNNIVPTQYLPEA
LFNLDNTIPGSGIIWVIFIMLITGALVNNFIGRKLIQLWEKLLNKIPGFRSIYSALKQ
LSDTVFSPSGKSLKKALLVEYPRKGMWTIAFQTGNYGGEVERKVGQKIINIYVPSTPN
PTSGFFIMLSKNDVIELDMSVDEAFKLIISTGVVTPIQKR"
misc_feature complement(436107..436694)
/locus_tag="Rmag_0397"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2928"
/db_xref="CDD:32752"
gene complement(436749..437525)
/locus_tag="Rmag_0398"
/db_xref="GeneID:4555629"
CDS complement(436749..437525)
/locus_tag="Rmag_0398"
/EC_number="3.4.11.18"
/note="TIGRFAM: methionine aminopeptidase, type I;
PFAM: peptidase M24;
KEGG: lpp:lpp1684 methionyl aminopeptidase"
/codon_start=1
/transl_table=11
/product="methionine aminopeptidase, type I"
/protein_id="YP_903636.1"
/db_xref="GI:118602421"
/db_xref="InterPro:IPR000994"
/db_xref="InterPro:IPR001714"
/db_xref="InterPro:IPR002467"
/db_xref="GeneID:4555629"
/translation="MSIAIKSKDDIEKMRVAGYLAANAIDMISPYVKAGISTDELDKI
CHDYIVNHQGAIAAPLNYHGFPKSICTSVNHVVCHGIPGFKRLKKGDIINIDITIIKD
GFHGDTSKMFIIGKSSVKAQLICRIAQECLYIGIKQVKPGIHLGEIGKAIGTHANKNN
CAVVRDYCGHGIGTEFHAEPQVVHYDDGKSDISPILEAGMTFTIEPMINLGGFEVITS
KVDNWTVTTKDHTLSAQWEHTILVSQNGCEILTLRDEESV"
misc_feature complement(436770..437495)
/locus_tag="Rmag_0398"
/note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides;
Region: MetAP1; cd01086"
/db_xref="CDD:29971"
misc_feature complement(order(436815..436817,436911..436913,
437016..437018,437205..437207,437238..437240,
437289..437291))
/locus_tag="Rmag_0398"
/note="active site"
/db_xref="CDD:29971"
gene complement(437525..438550)
/locus_tag="Rmag_0399"
/db_xref="GeneID:4555630"
CDS complement(437525..438550)
/locus_tag="Rmag_0399"
/note="PFAM: peptidase M48, Ste24p;
KEGG: vvy:VVA0973 Zn-dependent protease with chaperone
function"
/codon_start=1
/transl_table=11
/product="peptidase M48, Ste24p"
/protein_id="YP_903637.1"
/db_xref="GI:118602422"
/db_xref="InterPro:IPR001915"
/db_xref="InterPro:IPR006025"
/db_xref="GeneID:4555630"
/translation="MDFREHQDKAKKNTIIIWSLYLILLLISSMLIGYTLFIGLNLAQ
FYQPEYQQYSFNEKFIAANQIVFQNQEQLLGFLEFSLMVLLAMLSATAFGFYQKSNGH
KVALAFGGKLISDEDKLSIEEKQTLNIVAEQALAANIPAPALYIIPDNAINAFAAGKT
TQEAIVAITQGSMVSFNRTQLSGVIAHEIGHIVNHDIKLNIQISAFVFGFTALFFLAR
MIFYQAAYNRRMDGRAKLILFAIAAIIALIGMMTVWFGRILQAAMSRQREYLADASAV
QFTRYPNGLVEAFEIMQNSGNSGKTKLENPNTEEYTHAMLFGMSGELFATHPPLDKRI
KRIQNRI"
misc_feature complement(437534..438304)
/locus_tag="Rmag_0399"
/note="Peptidase family M48; Region: Peptidase_M48;
cl12018"
/db_xref="CDD:209416"
gene complement(438696..439304)
/locus_tag="Rmag_0400"
/db_xref="GeneID:4555631"
CDS complement(438696..439304)
/locus_tag="Rmag_0400"
/note="PFAM: LemA family protein;
KEGG: sde:Sde_3150 divalent cation transporter"
/codon_start=1
/transl_table=11
/product="LemA family protein"
/protein_id="YP_903638.1"
/db_xref="GI:118602423"
/db_xref="InterPro:IPR007156"
/db_xref="GeneID:4555631"
/translation="MEFLTQNWLLITIVVVLLIWIINIYNNLISYKTQYQNSFEQISI
QLKRRLDLIGNLVDVAKKYMEHERETLTAITEARAELTQANKVAKKNPGESSVMTNLA
SSQIALDSAMSGFNLKMEAYPDLKASENMMQLSEEMTTTENRIASARQGYNDLVQKFN
EYKKSFPNVLFAGVFGFGIDAQNLEFSENLEQLNQAPKDLFA"
misc_feature complement(438702..439184)
/locus_tag="Rmag_0400"
/note="LemA family; Region: LemA; cl00742"
/db_xref="CDD:120079"
gene 439862..440203
/locus_tag="Rmag_0401"
/pseudo
/db_xref="GeneID:4555558"
gene complement(440344..440419)
/locus_tag="Rmag_R0014"
/note="tRNA-His1"
/db_xref="GeneID:4554607"
tRNA complement(440344..440419)
/locus_tag="Rmag_R0014"
/product="tRNA-His"
/db_xref="GeneID:4554607"
gene 440667..441146
/locus_tag="Rmag_0402"
/pseudo
/db_xref="GeneID:4555559"
gene complement(442219..442295)
/locus_tag="Rmag_R0015"
/note="tRNA-Arg3"
/db_xref="GeneID:4554608"
tRNA complement(442219..442295)
/locus_tag="Rmag_R0015"
/product="tRNA-Arg"
/db_xref="GeneID:4554608"
gene complement(442344..442420)
/locus_tag="Rmag_R0016"
/note="tRNA-Pro2"
/db_xref="GeneID:4554609"
tRNA complement(442344..442420)
/locus_tag="Rmag_R0016"
/product="tRNA-Pro"
/db_xref="GeneID:4554609"
gene complement(442741..443710)
/locus_tag="Rmag_0403"
/pseudo
/db_xref="GeneID:4555560"
gene complement(443731..444399)
/locus_tag="Rmag_0404"
/db_xref="GeneID:4555632"
CDS complement(443731..444399)
/locus_tag="Rmag_0404"
/EC_number="2.7.7.7"
/note="KEGG: lpp:lpp1339 DNA polymerase III epsilon
subunit;
TIGRFAM: DNA polymerase III, epsilon subunit;
PFAM: Exonuclease, RNase T and DNA polymerase III;
SMART: Exonuclease"
/codon_start=1
/transl_table=11
/product="DNA polymerase III, epsilon subunit"
/protein_id="YP_903639.1"
/db_xref="GI:118602424"
/db_xref="InterPro:IPR000169"
/db_xref="InterPro:IPR006054"
/db_xref="InterPro:IPR006055"
/db_xref="InterPro:IPR006309"
/db_xref="InterPro:IPR013520"
/db_xref="GeneID:4555632"
/translation="MERLIVLDTETTGIEPSEGHRIIEIGCTEIVDRQITENNEYHEY
IQPSRNVGDSVRIHGITDKFLTNKPKFKAIVKTFLTYIEGATLIIHNAPFDLGFLNHE
LKLIGIDERIEDKCNIIDSLELSKQQRPGTLHNLDALCRRFEINSSARTVHGALLDAK
ILAQVYLAMTGGQSTLFNNEQTINEQANTNNIIRVERAIGKIKVVYANKQELAAHASY
FEKI"
misc_feature complement(443734..444393)
/locus_tag="Rmag_0404"
/note="DNA polymerase III, epsilon subunit,
Proteobacterial; Region: dnaQ_proteo; TIGR01406"
/db_xref="CDD:130473"
misc_feature complement(443890..444390)
/locus_tag="Rmag_0404"
/note="DEDDh 3'-5' exonuclease domain of the epsilon
subunit of Escherichia coli DNA polymerase III and similar
proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131"
/db_xref="CDD:99835"
misc_feature complement(order(443926..443928,443941..443943,
443950..443952,443992..443997,444115..444123,
444127..444132,444226..444231,444238..444243,
444358..444363,444367..444378))
/locus_tag="Rmag_0404"
/note="active site"
/db_xref="CDD:99835"
misc_feature complement(order(443926..443928,443941..443943,
443950..443952,443992..443997,444118..444123,
444127..444132,444226..444231,444238..444243,
444358..444363,444367..444378))
/locus_tag="Rmag_0404"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99835"
misc_feature complement(order(443926..443928,443941..443943,
444115..444117,444370..444372,444376..444378))
/locus_tag="Rmag_0404"
/note="catalytic site [active]"
/db_xref="CDD:99835"
gene 444470..444709
/locus_tag="Rmag_0405"
/db_xref="GeneID:4555633"
CDS 444470..444709
/locus_tag="Rmag_0405"
/note="TIGRFAM: DNA-directed RNA polymerase, omega
subunit;
PFAM: RNA polymerase Rpb6;
KEGG: psp:PSPPH_0198 DNA-directed RNA polymerase omega
chain (RNAP omegasubunit) (transcriptase omega chain) (RNA
polymerase omega subunit)"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase, omega subunit"
/protein_id="YP_903640.1"
/db_xref="GI:118602425"
/db_xref="InterPro:IPR003716"
/db_xref="InterPro:IPR006110"
/db_xref="GeneID:4555633"
/translation="MARVTVEECLEHVENRFELVLVAAKRAHQLSSGDYKPLLDAGKD
KPTVVALREIEAGLIDASILSETYEMQEQLSAQQK"
misc_feature 444470..444667
/locus_tag="Rmag_0405"
/note="DNA-directed RNA polymerase subunit omega;
Reviewed; Region: rpoZ; PRK00392"
/db_xref="CDD:178998"
gene 444984..445343
/locus_tag="Rmag_0406"
/pseudo
/db_xref="GeneID:4555561"
gene 446285..446458
/locus_tag="Rmag_0407"
/pseudo
/db_xref="GeneID:4555562"
gene complement(446690..446950)
/locus_tag="Rmag_0408"
/db_xref="GeneID:4555634"
CDS complement(446690..446950)
/locus_tag="Rmag_0408"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903641.1"
/db_xref="GI:118602426"
/db_xref="GeneID:4555634"
/translation="MAKVKILYILILLGVIMKNKSSFSSIVLTIALVAGYFIHNNQVI
KLNNEISSLTQEYNTKLTALQPNNTKQVAKSSAATSSSTDTL"
gene complement(446938..447924)
/locus_tag="Rmag_0409"
/db_xref="GeneID:4555635"
CDS complement(446938..447924)
/locus_tag="Rmag_0409"
/EC_number="4.2.1.24"
/note="catalyzes the formation of porphobilinogen from
5-aminolevulinate"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_903642.1"
/db_xref="GI:118602427"
/db_xref="InterPro:IPR001731"
/db_xref="GeneID:4555635"
/translation="MTILTHRPRRMRKHAHTRKLIRENNLTTSDLIFPIFIIEGENKR
QSIDSMPDIKRLSIDQLLIEAAELIELGIQAIALFPIVPSKKKSLHAQEAFNPNGLAQ
RAIRAIKQKYSNLAVISDVALDSFTTHGQDGLINDEGYVLNDETIKVLVKQALSHAQS
GSDIVAPSDMMDGRISVIRKALEENGFIHTSILAYSAKYASHYYGPFRDAVGSSVNLG
TSNKETYQMDPANSNEAIREVGLDIDEGADIVMIKPGLPYLDIVYRVKQTFGIPTFTY
HVSGEYVMLKAAVQNNWLKEEQVVLETLLAFKRAGADGILTYYAKQAAGWLK"
misc_feature complement(446941..447909)
/locus_tag="Rmag_0409"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region:
ALAD_PBGS_aspartate_rich; cd04823"
/db_xref="CDD:88599"
misc_feature complement(order(446998..447000,447007..447009,
447019..447021,447028..447030,447073..447075,
447145..447159,447211..447216,447223..447225,
447232..447243,447250..447255,447316..447324,
447409..447414,447493..447498,447772..447774,
447781..447783,447853..447861,447886..447891,
447898..447906))
/locus_tag="Rmag_0409"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88599"
misc_feature complement(order(447199..447201,447211..447213,
447409..447411,447904..447906))
/locus_tag="Rmag_0409"
/note="allosteric magnesium binding site [ion binding];
other site"
/db_xref="CDD:88599"
misc_feature complement(order(446971..446973,447088..447090,
447097..447099,447166..447168,447247..447249,
447259..447261,447286..447288,447301..447306,
447313..447315,447331..447333,447421..447423,
447529..447531,447553..447555,447559..447561,
447565..447567))
/locus_tag="Rmag_0409"
/note="active site"
/db_xref="CDD:88599"
misc_feature complement(order(447418..447420,447529..447531,
447553..447555))
/locus_tag="Rmag_0409"
/note="aspartate-rich active site metal binding site;
other site"
/db_xref="CDD:88599"
misc_feature complement(order(447166..447168,447331..447333))
/locus_tag="Rmag_0409"
/note="Schiff base residues; other site"
/db_xref="CDD:88599"
gene 447965..449833
/locus_tag="Rmag_0410"
/db_xref="GeneID:4555636"
CDS 447965..449833
/locus_tag="Rmag_0410"
/note="required for the synthesis of the
hydromethylpyrimidine moiety of thiamine"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiC"
/protein_id="YP_903643.1"
/db_xref="GI:118602428"
/db_xref="InterPro:IPR002817"
/db_xref="GeneID:4555636"
/translation="MSQSSKTLKNMSKVNEAFIKPFPSSNKIYVQGSCKDIQVPMREI
ILTDTIGELAEKNAPIHVYDTSGVYTDPNVKIDLRKGLGSIRSTWIEQRNDTEILTKL
SSNFSNERRDDAELDVLRFEHLQVPRRAKNTKNVSQMYYAKQGIITSEMEYIAIRENC
KWQEYKDQIGQNEGESFGANIPDVITSEFVRDEVSKGRAVIPANINHPETEPMIIGRN
FMVKINGNIGNSALGSSIEQEVDKMVWGIRWGADTIMDLSTGKNIHETREWIIRNSPV
PIGTVPIYQTLEKVNGIAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVRLQYVPLTINR
IIGIVSRGGSIMAKWCLAHHTESFIYTHFEDICEIMKQYDVTFSLGDGLRPGCIADAN
DAAQFGELETLGELTKIAWKHDVQTFIEGPGHVPMQMIKENMDKQLKECGEAPFYTLG
PLTTDIAPGYDHITSAIGAAQIGWYGCAMLCYVTPKEHLGLPNQDDVKQGIIAYKIAA
HAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLGLDPDTARKYHDETMPKQAAKTSH
FCSMCGPKFCSMKITQEIKTIDAGEIAKIKAIQIEMDKKSAEFLKNDSEIYMKEGA"
misc_feature 447974..449824
/locus_tag="Rmag_0410"
/note="thiamine biosynthesis protein ThiC; Provisional;
Region: PRK09284"
/db_xref="CDD:181756"
misc_feature 448022..448255
/locus_tag="Rmag_0410"
/note="ThiC-associated domain; Region: ThiC-associated;
pfam13667"
/db_xref="CDD:205844"
misc_feature 448373..449716
/locus_tag="Rmag_0410"
/note="ThiC family; Region: ThiC; pfam01964"
/db_xref="CDD:202065"
gene complement(450077..451333)
/locus_tag="Rmag_0411"
/db_xref="GeneID:4555637"
CDS complement(450077..451333)
/locus_tag="Rmag_0411"
/note="PFAM: Three-deoxy-D-manno-octulosonic-acid
transferase domain protein;
KEGG: plu:plu4854 3-deoxy-D-manno-octulosonic-acid
transferase (KDO transferase)"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase
domain-containing protein"
/protein_id="YP_903644.1"
/db_xref="GI:118602429"
/db_xref="InterPro:IPR007507"
/db_xref="GeneID:4555637"
/translation="MNRSLYNIIGYLLLPFIILRLIIKSIKTPEFRQRINERLGLIAK
IQTSIIWVHCVSMGEFKAAIIIIDQLIKQYPNHQLLITTTTPTSSNAVINHYKNKVFH
LYFPYDLPLIVKRYIKKINPKICLLLETEIWPNLTHELNKNNIPILLINARLSQQSKE
KYQRFTSNLIKQTLNKFTLIAAQNKNSANRFIELGTKNDDVIITGNIKFDQSTKPNIK
INNILQAMVGRRKIVIFASTHEGEEAQIINEYLKHKHTIDALLVIIPRHPERFDVVYK
SFKSANLNVIRRSENQPTQNAQILLGDSMGEMMSYFNIADIVFMGGSLSNTGGHNMLE
PATLAKPIIFGPNIFNFTEISSDLLKQNAAIQIQNVAGLFKKIVMLLNDEKQCKVLGN
NAQQYLYSKQGAVKNTLQLIKKFLTS"
misc_feature complement(450086..451333)
/locus_tag="Rmag_0411"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:180233"
misc_feature complement(450698..451243)
/locus_tag="Rmag_0411"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:203003"
misc_feature complement(450143..450577)
/locus_tag="Rmag_0411"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
gene 451387..452394
/locus_tag="Rmag_0412"
/db_xref="GeneID:4555638"
CDS 451387..452394
/locus_tag="Rmag_0412"
/note="TIGRFAM: small GTP-binding protein;
PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub
domain protein;
KEGG: lpp:lpp2702 hypothetical protein"
/codon_start=1
/transl_table=11
/product="small GTP-binding protein"
/protein_id="YP_903645.1"
/db_xref="GI:118602430"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006073"
/db_xref="InterPro:IPR006074"
/db_xref="InterPro:IPR006169"
/db_xref="GeneID:4555638"
/translation="MKFVDSASIRIEAGKGGAGCLGFRREKYIPDGGPDGGDGGDGGH
IYFQGQEGFNTLSEFRFKRLFRAKNGQPGSGQNKRGKSAQHLTVEIPLGTKIYDLETD
ELIGEMIEHEQIILVAKGGFHGLGNTRFKSSINRAPRKTTPGSPGEIREIGLELSIMA
DIGLLGMPNAGKSSLIRQISNAKSKVANYPFTTLHPSLGVVSYYDEHIIMADIPGLIE
NASKGVGLGFEFLKHLFHTKALLHVVDIFPVDGSDPVENFLTIEKELKKYDQKLAKKP
RLLAINKMDLLSGGDRETVVQSLLKGTRYNGKVYRISALNGLGCKNLVAGLFKLVKEN
E"
misc_feature 451390..452391
/locus_tag="Rmag_0412"
/note="GTPase CgtA; Reviewed; Region: obgE; PRK12299"
/db_xref="CDD:183417"
misc_feature 451393..451854
/locus_tag="Rmag_0412"
/note="GTP1/OBG; Region: GTP1_OBG; pfam01018"
/db_xref="CDD:110047"
misc_feature 451864..452379
/locus_tag="Rmag_0412"
/note="Obg GTPase; Region: Obg; cd01898"
/db_xref="CDD:206685"
misc_feature 451882..451905
/locus_tag="Rmag_0412"
/note="G1 box; other site"
/db_xref="CDD:206685"
misc_feature order(451891..451908,452230..452235,452239..452241,
452323..452328)
/locus_tag="Rmag_0412"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206685"
misc_feature 451927..451974
/locus_tag="Rmag_0412"
/note="Switch I region; other site"
/db_xref="CDD:206685"
misc_feature 451963..451965
/locus_tag="Rmag_0412"
/note="G2 box; other site"
/db_xref="CDD:206685"
misc_feature 452020..452031
/locus_tag="Rmag_0412"
/note="G3 box; other site"
/db_xref="CDD:206685"
misc_feature order(452029..452052,452059..452097)
/locus_tag="Rmag_0412"
/note="Switch II region; other site"
/db_xref="CDD:206685"
misc_feature 452230..452241
/locus_tag="Rmag_0412"
/note="G4 box; other site"
/db_xref="CDD:206685"
misc_feature 452323..452331
/locus_tag="Rmag_0412"
/note="G5 box; other site"
/db_xref="CDD:206685"
gene 452387..453157
/locus_tag="Rmag_0413"
/db_xref="GeneID:4555639"
CDS 452387..453157
/locus_tag="Rmag_0413"
/EC_number="2.7.2.11"
/note="KEGG: tcx:Tcr_0344 glutamate 5-kinase;
TIGRFAM: glutamate 5-kinase;
PFAM: aspartate/glutamate/uridylate kinase"
/codon_start=1
/transl_table=11
/product="glutamate 5-kinase"
/protein_id="YP_903646.1"
/db_xref="GI:118602431"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001057"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR005715"
/db_xref="GeneID:4555639"
/translation="MSKQRWVIKIGSALLTNDGKGLDKTAIISWVRQIKELIQQNIDI
ILVLSGAIAEGMKRLGWNERPENIHKLQAAAAVGQMGLVQTYETLFAQYNIHTAQVLL
THDNLANTNQSDNISATLNTLLSLGTVPIVNENDTVATDEIKFGDNDTLAALVVNLVG
ATQLVILTDQGGIYDADPRQNANAKLINKIHVNDEKLTQVASRACGSLGSGGMYTKVL
AAKIAAKSDVITIIASGRQVDVLSKLGAGKHIGTLIHC"
misc_feature 452387..>453151
/locus_tag="Rmag_0413"
/note="gamma-glutamyl kinase; Provisional; Region:
PRK05429"
/db_xref="CDD:180076"
misc_feature 452399..453151
/locus_tag="Rmag_0413"
/note="AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes
glutamate-dependent ATP cleavage; G5K transfers the
terminal phosphoryl group of ATP to the gamma-carboxyl
group of glutamate, in the first and controlling step of
proline (and, in mammals, ornithine)...; Region:
AAK_G5K_ProB; cd04242"
/db_xref="CDD:58608"
misc_feature order(452423..452425,452888..452896,452903..452908,
453014..453016,453020..453022,453032..453034)
/locus_tag="Rmag_0413"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58608"
misc_feature order(452498..452503,452510..452512,452600..452602,
452612..452614,452681..452683,452687..452689,
452729..452734,452750..452752,452759..452761,
452789..452791,452795..452800)
/locus_tag="Rmag_0413"
/note="homotetrameric interface [polypeptide binding];
other site"
/db_xref="CDD:58608"
misc_feature 452534..452557
/locus_tag="Rmag_0413"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:58608"
misc_feature order(452537..452539,452792..452794,452825..452827)
/locus_tag="Rmag_0413"
/note="putative allosteric binding site; other site"
/db_xref="CDD:58608"
gene 453151..453624
/locus_tag="Rmag_0414"
/db_xref="GeneID:4555640"
CDS 453151..453624
/locus_tag="Rmag_0414"
/EC_number="2.7.6.3"
/note="KEGG: hit:NTHI0077
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase;
TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase;
PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase,
HPPK"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_903647.1"
/db_xref="GI:118602432"
/db_xref="InterPro:IPR000550"
/db_xref="GeneID:4555640"
/translation="MLAYIGLGSNLNRPKEQIKNALITLNSTKDVKVVGLSSLYQSKP
IDDLKQPDYINAICQVDTHLTALELLYVCQGIETKQHRVREKKWGARTIDLDIIIYGV
KVIASKQLIVPHLQMINRAFVLVPLAELEPNFKVPVLGHIQDLIAKLDITKLIKL"
misc_feature 453157..453540
/locus_tag="Rmag_0414"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:29601"
misc_feature order(453172..453174,453274..453279,453283..453285,
453307..453309,453313..453315,453358..453360,
453370..453372,453379..453381,453394..453396,
453400..453402,453412..453414,453421..453423,
453430..453432,453436..453441,453481..453483,
453490..453495,453508..453510,453514..453516)
/locus_tag="Rmag_0414"
/note="catalytic center binding site [active]"
/db_xref="CDD:29601"
misc_feature order(453358..453360,453370..453372,453379..453381,
453394..453396,453400..453402,453421..453423,
453436..453441,453481..453483,453490..453495,
453508..453510)
/locus_tag="Rmag_0414"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29601"
gene 453621..454403
/gene="panB"
/locus_tag="Rmag_0415"
/db_xref="GeneID:4555641"
CDS 453621..454403
/gene="panB"
/locus_tag="Rmag_0415"
/EC_number="2.1.2.11"
/note="catalyzes the formation of tetrahydrofolate and
2-dehydropantoate from 5,10-methylenetetrahydrofolate and
3-methyl-2-oxobutanoate"
/codon_start=1
/transl_table=11
/product="3-methyl-2-oxobutanoate
hydroxymethyltransferase"
/protein_id="YP_903648.1"
/db_xref="GI:118602433"
/db_xref="InterPro:IPR003700"
/db_xref="GeneID:4555641"
/translation="MNIEALNNFKQSGEKITCLTAYDASFASVFDVCGIDIILIGDSL
GNVIQGGENTLNVSMDDMVYHTKAVTKGAQNALRISDMPYQSYTNSEQALTNAKLLII
AGAQMVKFEGGCEHEASFKIFQNNDIPVCGHLGLQPQSVIEMGGYKTEGRDKQSADKI
IKDALALASWGVKVIVLECIPANLAKQVSQSLSIPTIGIGAGVNCDGQILVSYDMLGI
HVGYVPKFVKNFLIDSGDIKSAVNAFIEAVKDKSFPGEQHSY"
misc_feature 453627..454382
/gene="panB"
/locus_tag="Rmag_0415"
/note="Ketopantoate hydroxymethyltransferase (KPHMT) is
the first enzyme in the pantothenate biosynthesis pathway.
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes
the first committed step in the biosynthesis of
pantothenate (vitamin B5), which is a...; Region:
KPHMT-like; cd06557"
/db_xref="CDD:119342"
misc_feature order(453627..453632,453687..453698,453705..453707,
453750..453752,453756..453773,453783..453788,
453801..453803,453810..453815,453822..453824,
453831..453833,453870..453875,453900..453902,
453918..453923,453936..453938,453990..454007,
454035..454040,454044..454055,454137..454139,
454257..454259,454266..454271,454311..454313,
454320..454334)
/gene="panB"
/locus_tag="Rmag_0415"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:119342"
misc_feature order(453678..453680,453735..453737,453741..453749,
453861..453863,453945..453947,454017..454019,
454032..454034,454152..454154,454245..454247,
454251..454253)
/gene="panB"
/locus_tag="Rmag_0415"
/note="active site"
/db_xref="CDD:119342"
misc_feature order(453744..453746,453861..453863,453945..453947)
/gene="panB"
/locus_tag="Rmag_0415"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119342"
gene 454403..455239
/gene="panC"
/locus_tag="Rmag_0416"
/db_xref="GeneID:4555642"
CDS 454403..455239
/gene="panC"
/locus_tag="Rmag_0416"
/EC_number="6.3.2.1"
/note="catalyzes the formation of (R)-pantothenate from
pantoate and beta-alanine"
/codon_start=1
/transl_table=11
/product="pantoate--beta-alanine ligase"
/protein_id="YP_903649.1"
/db_xref="GI:118602434"
/db_xref="InterPro:IPR003721"
/db_xref="InterPro:IPR004821"
/db_xref="GeneID:4555642"
/translation="MQLCYQNTQITKLVNNWHTQGKTVAFVPTMGGLHQGHLSLIDIA
KQKADKVIVSIFVNPAQFSKNEDLDSYPRTINADLTALKVNVDGVFIPNIKQIYPKGI
SKYIDVGKIGQILCGRTRPHFFNGVAQVVEILFGIVRPDVAVFGQKDYQQLLVIKQMV
KNLSLNICIESGEIIREKSGLAMSTRNQYLSKNEAKIATNLHKTLSYFKHEILQNKKV
YVLNELAKLDLKQHFKIDYLEVLDANNLKQITDNTHQIVILSAVFLGSVRLIDNIIFK
KG"
misc_feature 454403..455221
/gene="panC"
/locus_tag="Rmag_0416"
/note="Pantoate-beta-alanine ligase; Region: PanC;
cd00560"
/db_xref="CDD:185673"
misc_feature 454454..455224
/gene="panC"
/locus_tag="Rmag_0416"
/note="pantoate--beta-alanine ligase; Region: panC;
TIGR00018"
/db_xref="CDD:161666"
misc_feature order(454484..454495,454502..454504,454508..454513,
454520..454522,454574..454576,454583..454585,
454613..454615,454781..454783,454790..454795,
454835..454840,454844..454849,454856..454858,
454919..454927,454949..454960)
/gene="panC"
/locus_tag="Rmag_0416"
/note="active site"
/db_xref="CDD:185673"
misc_feature order(454484..454492,454502..454504,454511..454513,
454520..454522,454583..454585,454790..454795,
454835..454840,454844..454849,454856..454858,
454922..454927,454946..454951)
/gene="panC"
/locus_tag="Rmag_0416"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:185673"
misc_feature order(454484..454486,454490..454492,454574..454576,
454583..454585,454790..454795,454802..454804,
454856..454858)
/gene="panC"
/locus_tag="Rmag_0416"
/note="pantoate-binding site; other site"
/db_xref="CDD:185673"
misc_feature 454502..454513
/gene="panC"
/locus_tag="Rmag_0416"
/note="HXXH motif; other site"
/db_xref="CDD:185673"
gene 455242..455820
/locus_tag="Rmag_0417"
/db_xref="GeneID:4555643"
CDS 455242..455820
/locus_tag="Rmag_0417"
/note="PFAM: HesB/YadR/YfhF-family protein;
nitrogen-fixing NifU domain protein;
KEGG: hch:HCH_02543 thioredoxin-like protein"
/codon_start=1
/transl_table=11
/product="NifU domain-containing protein"
/protein_id="YP_903650.1"
/db_xref="GI:118602435"
/db_xref="InterPro:IPR000361"
/db_xref="InterPro:IPR001075"
/db_xref="GeneID:4555643"
/translation="MFDITDEAKVYVADLFAQQDEKDLGLKVDVEKAGTPAAVVTFNF
CFPKELSKTYKKFEYEGFYAYIDELNFEYLKDSEVALKDAGTGKKLTITAPNTKGKEP
KEDAPLEEKIKYVIAANINPGLASHGGFVELVEITKHMDVILNFGGGCQGCSSVKSTL
EQGVEAQLKMSFPEIKSVRDVTDHSNTDNAYI"
misc_feature 455242..455541
/locus_tag="Rmag_0417"
/note="Fe-S cluster assembly scaffold protein
[Posttranslational modification, protein turnover,
chaperones]; Region: sufA; COG0316"
/db_xref="CDD:30664"
misc_feature 455248..455814
/locus_tag="Rmag_0417"
/note="IscR-regulated protein YhgI; Region: YhgI_GntY;
TIGR03341"
/db_xref="CDD:132384"
misc_feature 455536..455799
/locus_tag="Rmag_0417"
/note="Thioredoxin-like proteins and domains
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0694"
/db_xref="CDD:31038"
gene 455872..456381
/locus_tag="Rmag_0418"
/db_xref="GeneID:4555644"
CDS 455872..456381
/locus_tag="Rmag_0418"
/note="KEGG: tcx:Tcr_0164 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_903651.1"
/db_xref="GI:118602436"
/db_xref="GeneID:4555644"
/translation="MIITIDASAKERRDAKVAHELFTINMVVVHLFLTLGLIKLLNTN
MSSAIGLSILISFIIIIYTYFRTKKAKSNDQYLIYLHWQLSLNRYKLLIGAYIFYFLV
TSLTLIISNDAPVSMDSTRIIDSILNLLGVVPLFFCILISVVLGSGSMFNAGRGEVDQ
KLAQKYPQS"
gene 456381..457310
/locus_tag="Rmag_0419"
/db_xref="GeneID:4555216"
CDS 456381..457310
/locus_tag="Rmag_0419"
/note="TIGRFAM: thiamine-monophosphate kinase;
PFAM: AIR synthase related protein domain protein;
KEGG: hit:NTHI1618 thiamine-monophosphate kinase"
/codon_start=1
/transl_table=11
/product="thiamine-monophosphate kinase"
/protein_id="YP_903652.1"
/db_xref="GI:118602437"
/db_xref="InterPro:IPR006283"
/db_xref="InterPro:IPR010918"
/db_xref="GeneID:4555216"
/translation="MNEFSLIETYFNWGGSNLANLGIGDDCAVIDIDANYQLVTSVDT
FIEGVHFPSNTSASDIAYKSLAVNLSDLAAVGARVKYFTLALTLPNINKKWLSQFSTS
LKSLADEFGIVLVGGDTTKGMLSITINVTGVVKKNKALLRSSAQVGDLIFVSNTIGDA
AYAWKQLQNNQTPSEYVINQFNRPKPQLFLGQQLSDIANACIDISDGLEQDLTHILTR
SNVGASINLDDIPLTYEVKTYIEKTNDWCLVLAGGDDYELCFTAPVKNMNLLKALQNK
NNITVTQIGIINDSMALTKIGFFDKQCCSYQHF"
misc_feature 456381..457307
/locus_tag="Rmag_0419"
/note="thiamine monophosphate kinase; Provisional; Region:
PRK05731"
/db_xref="CDD:180226"
misc_feature 456384..457241
/locus_tag="Rmag_0419"
/note="ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the...; Region: ThiL;
cd02194"
/db_xref="CDD:100030"
misc_feature order(456399..456401,456450..456458,456591..456593,
456630..456632,456678..456680,456726..456734,
456804..456806,456987..456989,456993..456998)
/locus_tag="Rmag_0419"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100030"
misc_feature order(456408..456410,456459..456461,456504..456512,
456516..456518,456678..456680,456723..456725,
456732..456743,456759..456761,456765..456767)
/locus_tag="Rmag_0419"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100030"
gene complement(457348..457758)
/locus_tag="Rmag_0420"
/db_xref="GeneID:4555217"
CDS complement(457348..457758)
/locus_tag="Rmag_0420"
/note="TIGRFAM: RNA polymerase-binding protein DksA;
PFAM: zinc finger, DksA/TraR C4-type;
KEGG: aci:ACIAD0273 DnaK suppressor protein"
/codon_start=1
/transl_table=11
/product="TraR/DksA family transcriptional regulator"
/protein_id="YP_903653.1"
/db_xref="GI:118602438"
/db_xref="InterPro:IPR000962"
/db_xref="InterPro:IPR012784"
/db_xref="GeneID:4555217"
/translation="MSQPNYQEIPNYQPKKNEKFMNNSQLEHFRKKLNTWRKQLVDDA
ESTINHIQKDSNQVADINDRATLEEEFALELRTRDRERKLIGKIDKTLYIIELGDYGF
CKTCGAEISLVRLEARPTADECIDCKTIAEKKEV"
misc_feature complement(457372..457698)
/locus_tag="Rmag_0420"
/note="RNA polymerase-binding protein DksA; Region: dksA;
TIGR02420"
/db_xref="CDD:131473"
gene 457849..458610
/locus_tag="Rmag_0421"
/db_xref="GeneID:4555218"
CDS 457849..458610
/locus_tag="Rmag_0421"
/note="TIGRFAM: HAD-superfami 