LOCUS NC_008836 3458208 bp DNA circular BCT 03-JAN-2013
DEFINITION Burkholderia mallei NCTC 10229 chromosome I, complete sequence.
ACCESSION NC_008836
VERSION NC_008836.1 GI:124383319
DBLINK Project: 58383
BioProject: PRJNA58383
KEYWORDS .
SOURCE Burkholderia mallei NCTC 10229
ORGANISM Burkholderia mallei NCTC 10229
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Burkholderiaceae; Burkholderia; pseudomallei group.
REFERENCE 1 (bases 1 to 3458208)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 2 (bases 1 to 3458208)
AUTHORS DeShazer,D., Woods,D.E. and Nierman,W.C.
TITLE Direct Submission
JOURNAL Submitted (05-JAN-2007) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000546.
The bacteria and source DNA are available from David DeShazer
(David.DeShazer@det.amedd.army.mil).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3458208
/organism="Burkholderia mallei NCTC 10229"
/mol_type="genomic DNA"
/strain="NCTC 10229"
/db_xref="taxon:412022"
/chromosome="I"
gene 81..959
/locus_tag="BMA10229_A0001"
/db_xref="GeneID:4791257"
CDS 81..959
/locus_tag="BMA10229_A0001"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026010.1"
/db_xref="GI:124384050"
/db_xref="GeneID:4791257"
/translation="MRQAEYHRAPGALRARIAAGLPLAAAPFAQAPVQDLPASDVPVS
DMPVSDMPVSDAPEQDTPSQDMRAPNKPAVDRPPEAKPRFGADARGGARAGRWFARPG
SRGPTLDRPGPGPGPRAAALPGLGWGVALTVALAAAAGFALDARRAATEHAVDEIVAS
HVRAGLSSRDIDVISTDRHTVKPWFNGRLDFAPPVVDLSASGFALAGGRLDYVGQRRV
AVLVYRYRQHVIDVYVWPSGEGGARPYATVSQGYALDRWEAAGMTWWAVTDAEPSALA
AFRTALDARVAAPRTE"
misc_feature <537..926
/locus_tag="BMA10229_A0001"
/note="Predicted transmembrane transcriptional regulator
(anti-sigma factor) [Transcription]; Region: COG5662"
/db_xref="CDD:35221"
gene 1194..1568
/gene="rpsF"
/locus_tag="BMA10229_A0002"
/db_xref="GeneID:4790951"
CDS 1194..1568
/gene="rpsF"
/locus_tag="BMA10229_A0002"
/note="binds cooperatively with S18 to the S15-16S
complex, allowing platform assembly to continue with S11
and S21"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_001026011.1"
/db_xref="GI:124386277"
/db_xref="GeneID:4790951"
/translation="MRHYEIVFIVHPDQSEQVPAMIERYKSTITSHGGQIHRVEDWGR
RQLAYMIEKLAKAHYVCMNIECDQTTLDELEHAFKFNDAVLRHLIVKMKKAETGPSPM
MKEVQREEAKKAAAAQPTEAQA"
misc_feature 1194..1502
/gene="rpsF"
/locus_tag="BMA10229_A0002"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 1605..1904
/gene="priB"
/locus_tag="BMA10229_A0003"
/db_xref="GeneID:4791768"
CDS 1605..1904
/gene="priB"
/locus_tag="BMA10229_A0003"
/codon_start=1
/transl_table=11
/product="primosomal replication protein N"
/protein_id="YP_001026012.1"
/db_xref="GI:124385536"
/db_xref="GeneID:4791768"
/translation="MNRLQLTASVVEREPVRYTPAGVPIASATLQHRTEVVEAGIARQ
VELTIPAVAAGEASGRLEACEMGVETLFTGFLAKKHRNARTLVFHITALQDIGKD"
misc_feature 1608..1901
/gene="priB"
/locus_tag="BMA10229_A0003"
/note="Replication protein A, class 2b aminoacyl-tRNA
synthetases, and related proteins with
oligonucleotide/oligosaccharide (OB) fold; Region:
RPA_2b-aaRSs_OBF_like; cl09930"
/db_xref="CDD:245205"
gene 1907..2182
/gene="rpsR"
/locus_tag="BMA10229_A0004"
/db_xref="GeneID:4792470"
CDS 1907..2182
/gene="rpsR"
/locus_tag="BMA10229_A0004"
/note="binds as a heterodimer with protein S6 to the
central domain of the 16S rRNA; helps stabilize the
platform of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_001026013.1"
/db_xref="GI:124384536"
/db_xref="GeneID:4792470"
/translation="MARPTGKKFDKRRQQQNPLFKRKKFCRFTAAGVEQIDYKDTETL
KDFIGENGKITPARLTGTKAHYQRQLDTAIKRARFLALLPYTDQHKA"
misc_feature 1934..2170
/gene="rpsR"
/locus_tag="BMA10229_A0004"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene 2210..2662
/gene="rplI"
/locus_tag="BMA10229_A0005"
/db_xref="GeneID:4793480"
CDS 2210..2662
/gene="rplI"
/locus_tag="BMA10229_A0005"
/note="in Escherichia coli this protein is wrapped around
the base of the L1 stalk"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_001026014.1"
/db_xref="GI:124384613"
/db_xref="GeneID:4793480"
/translation="MQIILLEKVANLGNLGDIVKVKDGYARNFLIPNRKARRATKDAI
AEFEVRRAELEKVAAEKLAAAQAVGEKLNGQTFEITQKSGVDGRLFGSVTNGDVAELL
KKAGYEIEKAQVRMPEGPLKMIGEHGVQVALHTDVVVDVTVNVIGDHA"
misc_feature 2210..2590
/gene="rplI"
/locus_tag="BMA10229_A0005"
/note="50S ribosomal protein L9; Reviewed; Region: rplI;
PRK00137"
/db_xref="CDD:234659"
misc_feature 2210..2350
/gene="rplI"
/locus_tag="BMA10229_A0005"
/note="Ribosomal protein L9, N-terminal domain; Region:
Ribosomal_L9_N; pfam01281"
/db_xref="CDD:201708"
misc_feature 2405..>2590
/gene="rplI"
/locus_tag="BMA10229_A0005"
/note="Ribosomal protein L9, C-terminal domain; Region:
Ribosomal_L9_C; pfam03948"
/db_xref="CDD:146531"
gene 2806..4188
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/db_xref="GeneID:4793377"
CDS 2806..4188
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/EC_number="3.6.1.-"
/note="unwinds double stranded DNA"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="YP_001026015.1"
/db_xref="GI:124385320"
/db_xref="GeneID:4793377"
/translation="MNAPKDPQIESLKVPPHSIEAEQSVLGGLLLDNGAWDRIADFLS
QSDFYRYDHRIIFEHIGRLIAATRPADVVTVYEALTTSGKAEDVGGLAYLNALAQNTP
SAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIAEDG
ARGTQGFLEIGPLLTQVVERIDTLYHTANPSDVTGTPTGFVDLDRMTSGMHGGELIIV
AGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLVMRMLGSVGRLDQHRMRTG
RLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIVDYLQ
LMTGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRE
SGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGPVRLTFLGQYTKFDN
FAGAQNFYGE"
misc_feature 2806..4182
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/note="replicative DNA helicase; Provisional; Region:
PRK07004"
/db_xref="CDD:235907"
misc_feature 2845..3153
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:216111"
misc_feature 3409..4128
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:238484"
misc_feature 3466..3486
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/note="Walker A motif; other site"
/db_xref="CDD:238484"
misc_feature order(3481..3486,3796..3798,3919..3921,4027..4029,
4093..4095,4126..4128)
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238484"
misc_feature 3787..3798
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/note="Walker B motif; other site"
/db_xref="CDD:238484"
misc_feature order(3811..3816,3835..3843,3916..3942,4024..4029,
4063..4068)
/gene="dnaB"
/locus_tag="BMA10229_A0006"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:238484"
gene 4327..4953
/locus_tag="BMA10229_A0007"
/db_xref="GeneID:4792819"
CDS 4327..4953
/locus_tag="BMA10229_A0007"
/note="identified by match to protein family HMM PF01865"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026016.1"
/db_xref="GI:124383509"
/db_xref="GeneID:4792819"
/translation="MFGRFMPTEGKFFEIFNAHANYIVSGGRELELLIDNLADAEIHK
QNVQSAEKAADKLTHEAIDLLHKTFITPLDRDEIHKLITTMDDILDLMEDVATAVSLY
DVRSVTSEASQLAHIVTQSAQHVQAAVALLSDMKQSGQILKACEEIDRWESEADRVLR
AAMSKLFREEDDVKTLIKLKAIYELLEQITDKCEDVANIIEGIVLENA"
misc_feature 4327..4947
/locus_tag="BMA10229_A0007"
/note="Phosphate transport regulator (distant homolog of
PhoU) [Inorganic ion transport and metabolism]; Region:
COG1392"
/db_xref="CDD:224310"
gene 4964..5974
/locus_tag="BMA10229_A0008"
/db_xref="GeneID:4793869"
CDS 4964..5974
/locus_tag="BMA10229_A0008"
/note="identified by match to protein family HMM PF01384"
/codon_start=1
/transl_table=11
/product="phosphate transporter family protein"
/protein_id="YP_001026017.1"
/db_xref="GI:124386492"
/db_xref="GeneID:4793869"
/translation="MHSIQLALWVVAALVLVALVFDFMNGFHDAANSIATVVSTGVLK
PQQAVVFAAAFNVIAYFIFHLKVAQTVGKGTIDASIVDHYVVFGALFGAIGWNIITWY
YGIPSSSSHALIGGLVGAAVSKSGWGSLNVDGLMKTVAFIFISPLLGFILGSLFMLGV
SWLYFRTAPSKVDRRFRRLQLLSASLYSLGHGGNDAQKTIGIIWMLLIASGYASAASD
APPAWVIGACYLSMGLGTLFGGWRIVRTMGQKITKLKPVGGFCAETGGALTLFIASWM
GIPVSTTHTITGAIVGVGATRKLSAVRWGVAGNIVWAWVLTIPASALIAAAGWWIGHR
VF"
misc_feature 5024..5971
/locus_tag="BMA10229_A0008"
/note="Phosphate/sulphate permeases [Inorganic ion
transport and metabolism]; Region: PitA; COG0306"
/db_xref="CDD:223383"
gene complement(6210..7433)
/locus_tag="BMA10229_A0009"
/db_xref="GeneID:4791622"
CDS complement(6210..7433)
/locus_tag="BMA10229_A0009"
/note="identified by match to protein family HMM PF00877"
/codon_start=1
/transl_table=11
/product="NLP/P60 family lipoprotein"
/protein_id="YP_001026018.1"
/db_xref="GI:124385202"
/db_xref="GeneID:4791622"
/translation="MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRG
FPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSGFDCSGLVRYVVDRAASVNLPRT
TADMSSIGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAAPKAKPAPFDAPTYQASRPSEPAPRVSPAAAAPAYAAVNAPA
ASAARAAAPSAPGYAANSATPAAARAAAPPPSSEYAAHSAAAMASAPASAAPLPNAVP
AAATAATAATAADPYEPPPSAMSAARRQAQAAGASSPVLAAGNPGGAVPPAAPPAGGP
TSMAGASAADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQVLRASTAGSAASAAAT
GSNDDPIARFANGGY"
misc_feature complement(6915..>7340)
/locus_tag="BMA10229_A0009"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature complement(6912..7235)
/locus_tag="BMA10229_A0009"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene complement(7673..9307)
/locus_tag="BMA10229_A0010"
/db_xref="GeneID:4792882"
CDS complement(7673..9307)
/locus_tag="BMA10229_A0010"
/note="identified by match to protein family HMM PF02562"
/codon_start=1
/transl_table=11
/product="PhoH family protein"
/protein_id="YP_001026019.1"
/db_xref="GI:124383804"
/db_xref="GeneID:4792882"
/translation="MVVAANTTTPLRAVAPAADASAGAPRARRAKQTAALLQPVPAAP
APVARSSKTDAAKPAAAAPAAPRAAAKTRGRKDAEVEMQKLFVLDTNVLMHDPSSLFR
FEEHDVYLPMMTLEELDNHKKGMSEVARNARQVSRTLDSLVADAGPISAGIPLARLGS
REALGRLYFQTTLTSIEPVEGLPQGKADNQILGVVRALQRERPDRQVVLVSKDINMRV
KAHALGLPAEDYFNDQVLEDKDLLYSGVRELPQDFWTKHAKGMESWQDTKTGTTYYRV
TGPLVASMLVNEFAYLEPQNGEPAFHAIVRELNGKTALLQTLRDYSHHKNNVWGITAR
NREQNFALNLLMNPEIDFVTLLGQAGTGKTLVALAAGLAQVLDDKRYNEIIVTRATVP
VGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKTDDAAGEWGRAATQELIRSRLKVKSM
NFMRGRTFVDKYVIIDEAQNLTPKQMKTLVTRAGPGTKIICLGNIAQIDTPYLTEGSS
GLTYVVDRFKGWGHSGHVTLARGERSRLADYASDIL"
misc_feature complement(7676..9064)
/locus_tag="BMA10229_A0010"
/note="NYN ribonuclease and ATPase of PhoH family domains
[General function prediction only]; Region: COG1875"
/db_xref="CDD:32059"
misc_feature complement(8603..9058)
/locus_tag="BMA10229_A0010"
/note="PIN domain of bacterial Smg6-like homologs with
PhoH-like ATPase domains; Region: PIN_PhoHL-ATPase;
cd09883"
/db_xref="CDD:189053"
misc_feature complement(order(8669..8671,8744..8746,8957..8959,
9041..9043))
/locus_tag="BMA10229_A0010"
/note="putative active site [active]"
/db_xref="CDD:189053"
misc_feature complement(7697..8320)
/locus_tag="BMA10229_A0010"
/note="PhoH-like protein; Region: PhoH; pfam02562"
/db_xref="CDD:190347"
gene 9350..9604
/locus_tag="BMA10229_A0011"
/db_xref="GeneID:4791227"
CDS 9350..9604
/locus_tag="BMA10229_A0011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026020.1"
/db_xref="GI:124383359"
/db_xref="GeneID:4791227"
/translation="MSGAPGGGLLRGFRGPRFRLVFVGRQQAAELAGGSRQRHGVPRE
ESCRRHAPPFASCDASRVQFARSGAHGVRIAGSPRFRSSP"
gene complement(9798..10259)
/locus_tag="BMA10229_A0012"
/db_xref="GeneID:4791282"
CDS complement(9798..10259)
/locus_tag="BMA10229_A0012"
/note="identified by match to protein family HMM PF00578;
match to protein family HMM PF08534"
/codon_start=1
/transl_table=11
/product="anti-oxidant AhpCTSA family protein"
/protein_id="YP_001026021.1"
/db_xref="GI:124385854"
/db_xref="GeneID:4791282"
/translation="MSVEVDRQVPDFTAPATGGEFSLSGIKGKKLVLYFYPKDNTPGC
TTEGLQFRDLYPKFKKAGAEIVGVSRDSLRSHENFKAKLELPFLLISDPDETLCALFG
VMKLKKMYGKEVRGIERSTFLIDGAGMLRHAWRGVKVPGHVDDVLSAVQAL"
misc_feature complement(<9864..10259)
/locus_tag="BMA10229_A0012"
/note="Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones]; Region: AhpC; COG0450"
/db_xref="CDD:30799"
misc_feature complement(9819..10238)
/locus_tag="BMA10229_A0012"
/note="Peroxiredoxin (PRX) family, Bacterioferritin
comigratory protein (BCP) subfamily; composed of
thioredoxin-dependent thiol peroxidases, widely expressed
in pathogenic bacteria, that protect cells against
toxicity from reactive oxygen species by reducing...;
Region: PRX_BCP; cd03017"
/db_xref="CDD:48566"
misc_feature complement(order(9903..9905,10128..10130,10137..10139))
/locus_tag="BMA10229_A0012"
/note="catalytic triad [active]"
/db_xref="CDD:48566"
gene complement(10349..11245)
/locus_tag="BMA10229_A0013"
/db_xref="GeneID:4792249"
CDS complement(10349..11245)
/locus_tag="BMA10229_A0013"
/note="identified by match to protein family HMM PF01522"
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase"
/protein_id="YP_001026022.1"
/db_xref="GI:124386484"
/db_xref="GeneID:4792249"
/translation="MARIVLKIDVDTLRGTREGVPNLARIFDRFAARATFLFSLGPDH
TGWAMRRVLRPGFLKKVSRTSVVEHYGVRQLLYGVLLPGPDIGRRARADMRAIHEAGF
ECGIHTWDHVYWQDNVRRRPREWTVREMNKSRERFVEIFGAPPVTHGAAGWQMNDAAF
EQIDAWGMRYASDGRGHSPYLPVVAGKTLAHVQMPTTLPTLDEILGVDGIDTGNVAAR
VLEHTERNPHDQVFTLHAELEGQKLAPVFEQLLAGWRAQGHTFATMGDYYATLDRAAL
PSYPVAWGEIPGRSGELIVQPD"
misc_feature complement(10358..11245)
/locus_tag="BMA10229_A0013"
/note="4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol
deformylase ArnD; Provisional; Region: PRK15394"
/db_xref="CDD:185292"
misc_feature complement(10364..11239)
/locus_tag="BMA10229_A0013"
/note="Catalytic domain of Escherichia coli
4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol
deformylase ArnD and other bacterial homologs; Region:
CE4_ArnD; cd10939"
/db_xref="CDD:200564"
misc_feature complement(order(10541..10543,10913..10915,10925..10927,
11213..11215,11219..11221))
/locus_tag="BMA10229_A0013"
/note="putative active site [active]"
/db_xref="CDD:200564"
misc_feature complement(order(10541..10543,11213..11215))
/locus_tag="BMA10229_A0013"
/note="putative catalytic site [active]"
/db_xref="CDD:200564"
misc_feature complement(order(10913..10915,10925..10927,11213..11215))
/locus_tag="BMA10229_A0013"
/note="putative Zn binding site [ion binding]; other site"
/db_xref="CDD:200564"
gene complement(11261..12316)
/locus_tag="BMA10229_A0014"
/db_xref="GeneID:4791614"
CDS complement(11261..12316)
/locus_tag="BMA10229_A0014"
/note="identified by match to protein family HMM PF01073;
match to protein family HMM PF01370"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_001026023.1"
/db_xref="GI:124383888"
/db_xref="GeneID:4791614"
/translation="MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL
VKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANL
PIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDR
VIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGG
SQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFP
EYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFE
AYRGHVADARAFVEQHG"
misc_feature complement(11273..12307)
/locus_tag="BMA10229_A0014"
/note="NAD-dependent epimerase/dehydratase family protein;
Provisional; Region: PRK11908"
/db_xref="CDD:183375"
misc_feature complement(11306..12304)
/locus_tag="BMA10229_A0014"
/note="Arna decarboxylase_like, extended (e) SDRs; Region:
Arna_like_SDR_e; cd05257"
/db_xref="CDD:187567"
misc_feature complement(order(11726..11728,12074..12076,12080..12088,
12146..12154,12209..12214,12272..12283,12287..12289))
/locus_tag="BMA10229_A0014"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187567"
misc_feature complement(order(11399..11401,11411..11413,11417..11419,
11534..11536,11651..11653,11657..11659,11672..11680,
11711..11716,11723..11728,11777..11788,11864..11866,
11873..11875,11951..11959,12059..12061,12068..12070,
12074..12076))
/locus_tag="BMA10229_A0014"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187567"
misc_feature complement(order(11852..11854,11864..11866,11957..11959,
12026..12028))
/locus_tag="BMA10229_A0014"
/note="active site"
/db_xref="CDD:187567"
gene complement(12313..13260)
/locus_tag="BMA10229_A0015"
/db_xref="GeneID:4791150"
CDS complement(12313..13260)
/locus_tag="BMA10229_A0015"
/note="identified by match to protein family HMM PF00551;
match to protein family HMM PF02911"
/codon_start=1
/transl_table=11
/product="formyltransferase"
/protein_id="YP_001026024.1"
/db_xref="GI:124384607"
/db_xref="GeneID:4791150"
/translation="MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDSPTEHIWF
GSVAAVAAEHGIAVITPADPAGADVRAALASAKPDFIFSFYYRHMLPVDLLALAARGA
YNMHGSLLPKYRGRVPTNWAVLNGETETGATLHEMAAKPDAGAIVGQTAVPILPDDTA
AQVFDKVTVAAEQTLWRVLPALLAGEAPHLPNDLSQGSYYGGRKPEDGRIDWTQPAAN
VYNLIRAVAPPYPGAFTDLGGTRFVIARARLAAPGTAAARAAVDLPPGLHVSDNALFG
VCGDSRAVSILELRRPHDGGEAVVSPAQFAQFIHSSRHS"
misc_feature complement(12316..13260)
/locus_tag="BMA10229_A0015"
/note="putative formyltransferase; Provisional; Region:
PRK06988"
/db_xref="CDD:235902"
misc_feature complement(12646..13254)
/locus_tag="BMA10229_A0015"
/note="Formyltransferase, catalytic core domain; Region:
FMT_core; cl00395"
/db_xref="CDD:241838"
misc_feature complement(order(12835..12840,12847..12852,12856..12858,
12916..12918,12940..12951,12976..12978,12991..13014,
13219..13227,13234..13236))
/locus_tag="BMA10229_A0015"
/note="active site"
/db_xref="CDD:187712"
misc_feature complement(order(12748..12750,12940..12942,12946..12948,
13006..13011,13222..13227))
/locus_tag="BMA10229_A0015"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187712"
misc_feature complement(order(12835..12840,12847..12852,12949..12951,
12976..12978,12991..12999,13003..13005,13012..13014))
/locus_tag="BMA10229_A0015"
/note="cosubstrate binding site; other site"
/db_xref="CDD:187712"
misc_feature complement(order(12835..12837,12943..12945,12949..12951))
/locus_tag="BMA10229_A0015"
/note="catalytic site [active]"
/db_xref="CDD:187712"
misc_feature complement(12397..12645)
/locus_tag="BMA10229_A0015"
/note="C-terminal subdomain of the formyltransferase
domain on ArnA, which modifies lipid A with
4-amino-4-deoxy-l-arabinose; Region: Arna_FMT_C; cd08702"
/db_xref="CDD:187730"
misc_feature complement(order(12568..12573,12583..12585))
/locus_tag="BMA10229_A0015"
/note="active site"
/db_xref="CDD:187730"
gene complement(13257..14264)
/locus_tag="BMA10229_A0016"
/db_xref="GeneID:4793371"
CDS complement(13257..14264)
/locus_tag="BMA10229_A0016"
/note="identified by match to protein family HMM PF00535"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_001026025.1"
/db_xref="GI:124386023"
/db_xref="GeneID:4793371"
/translation="MTHPETRATHPEVSIVIPVYNEEAGLAALFARLYPALDALGTPY
EVILVNDGSRDRSAALLADQFRVRPDTTRVVLLNGNYGQHMAILAGFEQSRGEIVITL
DADLQNPPEEIGKLIAKMREGYDYVGSIRLQRQDSLFRRKASAAMNRLRERITRIKMT
DQGCMLRAYSRHIIDTINRCGEVNTFIPALAYTFAQNPTEIEVAHEERFAGESKYSLY
SLIRLNFDLVTGFSVVPLQWLSFIGVILSLGSAALFVLLVVRRFIVGAEVQGVFTLFA
ITFFLLGVIIFALGLLGEYIGRIYQQVRARPRYLIHTVLEARDGKPGVTLAAERREAA
R"
misc_feature complement(13311..14231)
/locus_tag="BMA10229_A0016"
/note="undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase; Provisional;
Region: PRK10714"
/db_xref="CDD:182669"
misc_feature complement(13689..14222)
/locus_tag="BMA10229_A0016"
/note="Bacterial DPM1_like enzymes are related to
eukaryotic DPM1; Region: DPM1_like_bac; cd04187"
/db_xref="CDD:133030"
misc_feature complement(order(13950..13952,14205..14207,14211..14213))
/locus_tag="BMA10229_A0016"
/note="Ligand binding site; other site"
/db_xref="CDD:133030"
misc_feature complement(order(13950..13955,14112..14114))
/locus_tag="BMA10229_A0016"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133030"
misc_feature complement(13950..13958)
/locus_tag="BMA10229_A0016"
/note="DXD motif; other site"
/db_xref="CDD:133030"
gene complement(14271..15422)
/locus_tag="BMA10229_A0017"
/db_xref="GeneID:4792056"
CDS complement(14271..15422)
/locus_tag="BMA10229_A0017"
/note="identified by match to protein family HMM PF01041;
match to protein family HMM PF01212"
/codon_start=1
/transl_table=11
/product="aminotransferase"
/protein_id="YP_001026026.1"
/db_xref="GI:124383514"
/db_xref="GeneID:4792056"
/translation="MSQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEA
ALSEYCGGRPVRVFNSGTATLEIGLRIAGVGPGDEVITTPASWVATSNVILETGATPV
FVDIDPVTRNLDLGLVEKAITPRTKAIIPVYLAGLPVDMDRLYAIARAHELRVIEDAA
QALGSTWRGQRIGAIGDIVSFSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITR
TGLDGMDCDVLGGKYNLTDVAARVGWGQLAHLERFNATRHALARRYFDAFANGPACAL
GVGLPVADFENTNWHMFQITLPLEKLSISRGEFMEQLKQRGIGSGVHYPAIHLFTLYR
ARGFAQGMFPHAERFGASTVTLPLFTQMSEAHVQRVVDAVNQICEQYGK"
misc_feature complement(14283..15407)
/locus_tag="BMA10229_A0017"
/note="Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall biogenesis
[Cell envelope biogenesis, outer membrane]; Region: WecE;
COG0399"
/db_xref="CDD:223476"
misc_feature complement(14298..15362)
/locus_tag="BMA10229_A0017"
/note="3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The members of this CD are involved in various
biosynthetic pathways for secondary...; Region: AHBA_syn;
cd00616"
/db_xref="CDD:99740"
misc_feature complement(order(14454..14456,14862..14867,14877..14879,
14940..14942,14949..14951,15237..15242))
/locus_tag="BMA10229_A0017"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99740"
misc_feature complement(order(14862..14864,14877..14879,14940..14942,
14949..14951,15165..15167,15237..15242))
/locus_tag="BMA10229_A0017"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99740"
misc_feature complement(14862..14864)
/locus_tag="BMA10229_A0017"
/note="catalytic residue [active]"
/db_xref="CDD:99740"
gene complement(15549..15920)
/locus_tag="BMA10229_A0018"
/db_xref="GeneID:4793874"
CDS complement(15549..15920)
/locus_tag="BMA10229_A0018"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026027.1"
/db_xref="GI:124384126"
/db_xref="GeneID:4793874"
/translation="MNPVSLFCIVTGVMLNACAQLLLKAGVRAVGHFEFTRANIVPIG
FKIATQLPIIGGLGCYVLSVVVWIVGLSRVDVSVAYPMLSLGYVVNAFAAWYLFGEVL
SVQRLVGIGIILIGVFVLARS"
misc_feature complement(15612..>15755)
/locus_tag="BMA10229_A0018"
/note="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
flippase subunit ArnE; Provisional; Region: PRK15051"
/db_xref="CDD:185011"
gene complement(15917..17647)
/locus_tag="BMA10229_A0019"
/db_xref="GeneID:4790846"
CDS complement(15917..17647)
/locus_tag="BMA10229_A0019"
/note="identified by match to protein family HMM PF02366"
/codon_start=1
/transl_table=11
/product="dolichyl-phosphate-mannose-protein
mannosyltransferase"
/protein_id="YP_001026028.1"
/db_xref="GI:124383526"
/db_xref="GeneID:4790846"
/translation="MNDTPTRLPLDRAAPVTLNRAALLLLVAALAVIWFAPLGLRHLI
PSDEGRYAEMAREMFVTGDWITPRYNGYKYFEKPPLQTWLNALTFAWFGIGEWQARLY
TALASFAGVLFAGYAGARVFNPRAGFFAALVLASSPYWNLMGHFNALDMGLSLWMTVT
LCALLLAQRPGIGKRAERGWMWLCWASMALAVLSKGLIGLILPGAVLVLYTLASRDWA
LWKRLHLVSGLVIFFAIATPWFVLVQSRNPEFFNFFFIVQQFRRYLTPEQNRPGAFYY
FAPVLAVGFLPWLSVSVQSVRHALRIPRQPNGFAPMLMLATWSVFIFLFFSASHSKLI
SYVLPVAPALALMIGAYLPLVSREQFRRHLFGYLVFLVAAAFGTLFLARLGDARTPNS
QYLEFQKWVYVALAAAFALTLVAVWLNRRGRAGVAAAAVAFGAGWLLLGTIGGTGHDA
FGRYSSGALLAPAIREELAKLPPDTPFYSVETLDHTLPFYVGHTMIMVERKDELTFGI
SVEPNKWVPTVAEWEQRWRADRHALALMSPDRYKQLSEAGLPMRVVARDNRRVVVEKP
QSRAAKDPNR"
misc_feature complement(<16517..17551)
/locus_tag="BMA10229_A0019"
/note="4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane]; Region: ArnT; COG1807"
/db_xref="CDD:31992"
misc_feature complement(16931..17419)
/locus_tag="BMA10229_A0019"
/note="Dolichyl-phosphate-mannose-protein
mannosyltransferase; Region: PMT_2; pfam13231"
/db_xref="CDD:205412"
gene complement(17816..18190)
/locus_tag="BMA10229_A0020"
/db_xref="GeneID:4793886"
CDS complement(17816..18190)
/locus_tag="BMA10229_A0020"
/note="identified by match to protein family HMM PF04430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026029.1"
/db_xref="GI:124383807"
/db_xref="GeneID:4793886"
/translation="MKLHQDPSNALNTVTGYGPDYVDINLQRHETSVIVLPGAPVVEW
PVASFDALTPELFAMLLEPQPEVVVFGSGARLRFPHPRLTAQLTAQRVGVETMDFQAA
CRTYNILMAEGRKVAAALLIER"
misc_feature complement(17828..18154)
/locus_tag="BMA10229_A0020"
/note="Xcc1710_like family, specific to proteobacteria.
Xcc1710 is a hypothetical protein from Xanthomonas
campestris pv. campestris str. ATCC 33913, similar to
Mth938, a hypothetical protein encoded by the
Methanobacterium thermoautotrophicum (Mth) genome; Region:
Xcc1710_like; cd05560"
/db_xref="CDD:88593"
gene 18752..19771
/locus_tag="BMA10229_A0021"
/db_xref="GeneID:4791230"
CDS 18752..19771
/locus_tag="BMA10229_A0021"
/EC_number="2.6.1.2"
/note="identified by match to protein family HMM PF00155"
/codon_start=1
/transl_table=11
/product="aminotransferase, classes I and II"
/protein_id="YP_001026030.1"
/db_xref="GI:124386649"
/db_xref="GeneID:4791230"
/translation="MFAARKAIMHYTQQKGVHGVGLDDIYIGNGASELIVMATQALLN
DGDEVLLPAPDYPLWTAAVSLSGGTPVHYVCDESNRWMPDPDDIRRKITPNTKALVVI
NPNNPTGALYSDALLVELIAIAREHGLIIFADEVYDKIVYDGKSHTALASLAEDVITV
TFNSLSKSYRSCGYRAGWMSVAGLTAENRRRAHDYLEGLGILSSMRLCANVPGQYAIQ
TALGGYQSINELIMPSGRLYKQRELAYDMLTSIPGVSCVKPEAALYMFPRLDPKLYPI
ENDQQFILELLLRERVLLVQGTGFNWPTPDHFRVVFLPNVDDLTDSIERIARFLDGYR
KRNSV"
misc_feature 18764..19735
/locus_tag="BMA10229_A0021"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature order(18839..18847,18917..18919,19067..19069,19160..19162,
19241..19243,19247..19252,19274..19276)
/locus_tag="BMA10229_A0021"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature order(18848..18850,18947..18949,19139..19141,19268..19276,
19388..19390,19397..19399)
/locus_tag="BMA10229_A0021"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature 19250..19252
/locus_tag="BMA10229_A0021"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 19816..21144
/gene="hom"
/locus_tag="BMA10229_A0022"
/db_xref="GeneID:4791433"
CDS 19816..21144
/gene="hom"
/locus_tag="BMA10229_A0022"
/EC_number="1.1.1.3"
/note="catalyzes the formation of L-aspartate
4-semialdehyde from L-homoserine"
/codon_start=1
/transl_table=11
/product="homoserine dehydrogenase"
/protein_id="YP_001026031.1"
/db_xref="GI:124385647"
/db_xref="GeneID:4791433"
/translation="MEPIKVGLLGFGTVGGGTFKVLRRNQEEIKRRAGRGIEIARVAV
RNPAKALAALDGDANGVSIGDDFNAVVDDPSIAIVAEMIGGTGLARELVLRAIANGKH
VVTANKALLAVHGTEIFEAARAKGVMVAFEAAVAGGIPIIKALREGLTANRIQYIAGI
INGTTNYILSEMRERGLDFATALKAAQELGYAEADPTFDIEGVDAAHKATIMSAIAFG
VPVQFDRAYVEGISRLAATDIKYAEELGYRIKLLGITRRTERGIELRVHPTLIPAKRL
LANVEGAMNAVVVHGDAVGTTLYYGKGAGAEPTASAVVADLVDVTRLHTADPEHRVPH
LAFQPDSLSNTPILPIEEVTSGYYLRLRVADQTGVLADITRILAESGISIDALLQKES
EQVDDANGETDIILITHETVEKNVNAAIARIESLATVVSKVTKLRMEALN"
misc_feature 19882..21132
/gene="hom"
/locus_tag="BMA10229_A0022"
/note="homoserine dehydrogenase; Provisional; Region:
PRK06349"
/db_xref="CDD:235783"
misc_feature 19882..20211
/gene="hom"
/locus_tag="BMA10229_A0022"
/note="Homoserine dehydrogenase, NAD binding domain;
Region: NAD_binding_3; pfam03447"
/db_xref="CDD:217564"
misc_feature 20233..20766
/gene="hom"
/locus_tag="BMA10229_A0022"
/note="Homoserine dehydrogenase; Region: Homoserine_dh;
pfam00742"
/db_xref="CDD:216092"
misc_feature 20884..21132
/gene="hom"
/locus_tag="BMA10229_A0022"
/note="ACT_HSDH_Hom CD includes the C-terminal ACT domain
of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH)
and related domains; Region: ACT_HSDH-Hom; cd04881"
/db_xref="CDD:153153"
gene 21152..22603
/gene="thrC"
/locus_tag="BMA10229_A0023"
/db_xref="GeneID:4792401"
CDS 21152..22603
/gene="thrC"
/locus_tag="BMA10229_A0023"
/EC_number="4.2.3.1"
/note="catalyzes the formation of L-threonine from
O-phospho-L-homoserine"
/codon_start=1
/transl_table=11
/product="threonine synthase"
/protein_id="YP_001026032.1"
/db_xref="GI:124384010"
/db_xref="GeneID:4792401"
/translation="MNYISTRGAGIGERHTFSDILLGGLAKDGGLYLPSEYPRVSADE
LARWRALPYADLAFEILAKFCDDIPADDLRAITRRTYTADVYRHTRHGGNAADITPLT
TLGAENGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAAHGETLNILGATSGDTGS
AAEYAMRGKRGVRVFMLSPHRKMSAFQTAQMYSLQDPNIFNLAVKGVFDDCQDIVKAV
SNDHAFKAQQKIGTVNSINWARVVAQVVYYFKGYFAATRTNDERVSFTVPSGNFGNVC
AGHIARMMGLPIEKLVVATNENDVLDEFFRTGAYRVRSAEHTYHTSSPSMDISKASNF
ERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSGRSTHADRLATI
RDVFERYRTTIDTHTADGLKVAREHLQPGVPMIVLETAQPIKFGETIREALGREPSRP
AAFDGLEALPQRFEVVDASAQQVKDFIAAHTGA"
misc_feature 21152..22591
/gene="thrC"
/locus_tag="BMA10229_A0023"
/note="Threonine synthase [Amino acid transport and
metabolism]; Region: ThrC; COG0498"
/db_xref="CDD:30844"
misc_feature 21158..22579
/gene="thrC"
/locus_tag="BMA10229_A0023"
/note="Threonine synthase catalyzes the final step of
threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic phosphate
is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD
includes members from higher plants, cyanobacteria;
Region: Thr-synth_2; cd01560"
/db_xref="CDD:107203"
misc_feature order(21527..21529,21959..21964,22436..22438)
/gene="thrC"
/locus_tag="BMA10229_A0023"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107203"
misc_feature 21527..21529
/gene="thrC"
/locus_tag="BMA10229_A0023"
/note="catalytic residue [active]"
/db_xref="CDD:107203"
gene 23379..24671
/gene="moeA-2"
/locus_tag="BMA10229_A0024"
/db_xref="GeneID:4791092"
CDS 23379..24671
/gene="moeA-2"
/locus_tag="BMA10229_A0024"
/note="identified by match to protein family HMM PF00994;
match to protein family HMM PF03453; match to protein
family HMM PF03454; match to protein family HMM TIGR00177"
/codon_start=1
/transl_table=11
/product="molybdopterin biosynthesis moeA protein"
/protein_id="YP_001026033.1"
/db_xref="GI:124384914"
/db_xref="GeneID:4791092"
/translation="MLSTADALTALLAAARPLAEIETVPTLEALNRVLAADVASGLDV
PPMNTSAMDGYAVRIADLTRGERRLPVSQRIAAGHPAAPLAPGTAARIFTGASVPAGA
DAVVMQEQTEAAGDQVDILHTPTVGEWITAQGADIRRGSVILPAGTRMTPQAMGLAAS
VGCVSLAVTRRVKVAVFFTGDELTMPGEPLKPGAIYNSNRFTLRGLLERLGCDVTDYG
IVPDRLDATRAALREAAREHDVIVTSGGVSVGDEDHVKPAVEAEGRLALWQIAMKPGK
PLAFGAIRRDGAASGAAAVEANAHGASDASDTRAMHATSGGEAYFIGLPGNPVSSFVT
FLLFVRPFLLRVAGAAQVAPRAVSLRADFTQNKADRRNEFLRARVNAAGGLDLFPNQS
SAVLTSTVWGDGLIDNPPNHAISAGETVRFIPFSELLG"
misc_feature 23436..24662
/gene="moeA-2"
/locus_tag="BMA10229_A0024"
/note="Molybdopterin biosynthesis enzyme [Coenzyme
metabolism]; Region: MoeA; COG0303"
/db_xref="CDD:30651"
misc_feature 23436..24653
/gene="moeA-2"
/locus_tag="BMA10229_A0024"
/note="MoeA family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (MoCF), an
essential cofactor of a diverse group of redox enzymes.
MoCF biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and...; Region: MoeA;
cd00887"
/db_xref="CDD:58168"
misc_feature order(23457..23459,23784..23786,23829..23840,23844..23846,
23853..23858,23862..23864,23964..23966,23970..23972,
23979..23981,24447..24449,24558..24560,24639..24641)
/gene="moeA-2"
/locus_tag="BMA10229_A0024"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58168"
misc_feature order(23913..23918,23922..23924,24042..24044,24114..24116)
/gene="moeA-2"
/locus_tag="BMA10229_A0024"
/note="putative functional site; other site"
/db_xref="CDD:58168"
misc_feature order(24114..24122,24351..24356,24366..24368,24375..24377)
/gene="moeA-2"
/locus_tag="BMA10229_A0024"
/note="putative MPT binding site; other site"
/db_xref="CDD:58168"
gene 24693..24950
/gene="moaD"
/locus_tag="BMA10229_A0025"
/db_xref="GeneID:4793136"
CDS 24693..24950
/gene="moaD"
/locus_tag="BMA10229_A0025"
/note="identified by match to protein family HMM PF02597;
match to protein family HMM TIGR01682"
/codon_start=1
/transl_table=11
/product="molybdopterin converting factor subunit 1"
/protein_id="YP_001026034.1"
/db_xref="GI:124385449"
/db_xref="GeneID:4793136"
/translation="MKIELKFFASVREALGVASETVTVPDGVATVGDVRAWLRARGGA
WADTLAEGRALRMACNHTMTDAGTRITEGCEVAFFPPVTGG"
misc_feature 24699..24947
/gene="moaD"
/locus_tag="BMA10229_A0025"
/note="Ubiquitin domain of MoaD-like proteins; Region:
MoaD; cd00754"
/db_xref="CDD:176354"
misc_feature order(24714..24722,24726..24731,24870..24872,24915..24917,
24930..24938,24945..24947)
/gene="moaD"
/locus_tag="BMA10229_A0025"
/note="MoaE interaction surface [polypeptide binding];
other site"
/db_xref="CDD:176354"
misc_feature order(24714..24719,24726..24731,24930..24932,24936..24938,
24945..24947)
/gene="moaD"
/locus_tag="BMA10229_A0025"
/note="MoeB interaction surface [polypeptide binding];
other site"
/db_xref="CDD:176354"
misc_feature 24945..24947
/gene="moaD"
/locus_tag="BMA10229_A0025"
/note="thiocarboxylated glycine; other site"
/db_xref="CDD:176354"
gene 24961..25449
/gene="moaE"
/locus_tag="BMA10229_A0026"
/db_xref="GeneID:4792562"
CDS 24961..25449
/gene="moaE"
/locus_tag="BMA10229_A0026"
/note="identified by match to protein family HMM PF02391"
/codon_start=1
/transl_table=11
/product="molybdopterin converting factor subunit 2"
/protein_id="YP_001026035.1"
/db_xref="GI:124385226"
/db_xref="GeneID:4792562"
/translation="MATVRVQADDFDVSAEIAALRARNPKVGAIACFVGTVRDLNEGE
QIDALELEHYPGMTEKALAAIAEDAIARWPGIDVAIVHRVGKLYPLDQIVFVATVSAH
RGDAFQSCEFVMDYLKTQAPFWKKEKTPAGERWVDARSADDAALARWGVESGNAREKR
ST"
misc_feature 24991..25368
/gene="moaE"
/locus_tag="BMA10229_A0026"
/note="MoaE family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (Moco), an
essential cofactor for a diverse group of redox enzymes.
Moco biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and...; Region: MoaE;
cd00756"
/db_xref="CDD:238385"
misc_feature order(25009..25011,25021..25023,25042..25044,25048..25062,
25066..25068,25072..25074,25234..25236,25261..25263,
25267..25269,25291..25293,25303..25305)
/gene="moaE"
/locus_tag="BMA10229_A0026"
/note="MoaE homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:238385"
misc_feature order(25114..25116,25120..25122,25129..25131,25138..25140,
25150..25152,25204..25206,25312..25317,25321..25323,
25327..25335,25363..25365)
/gene="moaE"
/locus_tag="BMA10229_A0026"
/note="MoaD interaction [polypeptide binding]; other site"
/db_xref="CDD:238385"
misc_feature order(25312..25314,25333..25335)
/gene="moaE"
/locus_tag="BMA10229_A0026"
/note="active site residues [active]"
/db_xref="CDD:238385"
gene complement(25771..26313)
/locus_tag="BMA10229_A0027"
/db_xref="GeneID:4792906"
CDS complement(25771..26313)
/locus_tag="BMA10229_A0027"
/note="identified by match to protein family HMM PF01152"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026036.1"
/db_xref="GI:124386131"
/db_xref="GeneID:4792906"
/translation="MTQAFSASSAAAKPARDAEPTPENIRALVDAFYDRVRDDALLGP
VFESKLAGRWDQHLPKMGEFWSSLVLGTKSYRGNVQAAHQPLDGLEPVHFSRWLALFL
KTVEARYEPAAAVRFMEPALRIAQSLQLSRFGWDYRIPAEQQVILDLIAPKRPDDAAH
RPRGEPFPTKIIGRTARDDT"
misc_feature complement(25921..26250)
/locus_tag="BMA10229_A0027"
/note="Truncated hemoglobins (trHbs) are a family of
oxygen-binding heme proteins found in cyanobacteria,
eubacteria, unicellular eukaryotes, and plants. The
truncated hemoglobins have a characteristic two-over-two
alpha helical folding pattern that is distinct...; Region:
Trunc_globin; cd00454"
/db_xref="CDD:29978"
misc_feature complement(order(25951..25953,25960..25962,25990..25992,
25999..26001,26011..26013,26020..26022,26107..26109,
26116..26121,26218..26220,26227..26232,26239..26244))
/locus_tag="BMA10229_A0027"
/note="apolar tunnel; other site"
/db_xref="CDD:29978"
misc_feature complement(order(25930..25932,25942..25944,26023..26025,
26032..26034,26056..26058,26065..26070,26077..26079,
26080..26082,26089..26091,26119..26124,26131..26133,
26143..26145,26176..26181,26215..26217))
/locus_tag="BMA10229_A0027"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:29978"
misc_feature complement(order(25987..25995,26005..26007,26014..26016,
26197..26202,26209..26211))
/locus_tag="BMA10229_A0027"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29978"
gene 26497..26994
/locus_tag="BMA10229_A0028"
/db_xref="GeneID:4791984"
CDS 26497..26994
/locus_tag="BMA10229_A0028"
/note="identified by match to protein family HMM PF02082;
match to protein family HMM TIGR00738"
/codon_start=1
/transl_table=11
/product="Rrf2 family protein"
/protein_id="YP_001026037.1"
/db_xref="GI:124383404"
/db_xref="GeneID:4791984"
/translation="MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKV
VQQLGELGWIETVRGRNGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHRSC
VIQSACRLRGVFAAAREAFFAELDKHTIGELAQPASQLATLLGLAPVRIVSAADIRAA
APVVG"
misc_feature 26497..26928
/locus_tag="BMA10229_A0028"
/note="Transcriptional regulator; Region: Rrf2; cl17282"
/db_xref="CDD:247836"
misc_feature 26497..26898
/locus_tag="BMA10229_A0028"
/note="Rrf2 family protein; Region: rrf2_super; TIGR00738"
/db_xref="CDD:129821"
gene 26991..27104
/locus_tag="BMA10229_A0029"
/db_xref="GeneID:4791327"
CDS 26991..27104
/locus_tag="BMA10229_A0029"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026038.1"
/db_xref="GI:124384987"
/db_xref="GeneID:4791327"
/translation="MTTRRPRRAGGLPDGFPACAGRAARRVPLSFAAARFA"
gene 27198..29795
/gene="clpB"
/locus_tag="BMA10229_A0030"
/db_xref="GeneID:4793028"
CDS 27198..29795
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="identified by match to protein family HMM PF00004;
match to protein family HMM PF02861; match to protein
family HMM PF07724; match to protein family HMM PF07728"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease, ATP-binding subunit
ClpB"
/protein_id="YP_001026039.1"
/db_xref="GI:124385885"
/db_xref="GeneID:4793028"
/translation="MRIDKLTTKFQEALSDAQSFAAGRDNQYIEPVHVLAALVAQQDG
SARSLLSRAGVHIQALQGALNEAISRLPQVTGTGGDIQVGRELAGLLNQADKEAQKLN
DTFVASEMFLLAVADDKGEAGKLARQHGLTRRALESAIAAVRGGSQVHSQDAESQREA
LKKYTVDLTERARAGKLDPVIGRDDEIRRSIQILQRRTKNNPVLIGEPGVGKTAIVEG
LAQRIVNGEVPETLKNKRVLSLDMAALLAGAKYRGEFEERLKAVLNDIAKDEGRTIVF
IDEIHTMVGAGKAEGAMDAGNMLKPALSRGELHCIGATTLDEYRKYIEKDAALERRFQ
KVLVDEPSVEATIAILRGLQEKYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAID
LIDEAASRIKMEIDSKPEEMDKLDRRLIQLKIEREAVKKEPDEASQKRLALIEEEIER
LGREYADLDEIWTAEKAAVQGSAQLKEEIDKVRADIARLQREGKLEKVAELQYGKLPQ
LEARLKQVTQAEESEQHNPTRPRLLRTQVGAEEIAEVVSRATGIPVSRMMQGEREKLL
HIEEKLHERVVGQNEAIDAVADAIRRSRAGLADPNRPYGSFLFLGPTGVGKTELCKAL
AGFLFDSEEHLIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILL
DEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSQLIQSMSGSSQE
EIKDAVWVEVKQHFRPEFLNRIDDVVVFHSLDRGNIQAIAKIQLARLHDRLAKLDMAL
DVSEAALEQIGKVGYDPLFGARPLKRAIQQEIENPVAKLILAGRFGPKDVIPVDMQDG
RFVFERVVH"
misc_feature 27213..29777
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:163223"
misc_feature 27246..27404
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 27477..27632
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 27738..28220
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 27813..27836
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(27816..27839,28029..28031,28140..28142)
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 28017..28034
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 28191..28193
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 28926..29501
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 29028..29051
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(29031..29054,29244..29246,29370..29372)
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 29232..29249
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 29478..29480
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 29508..29750
/gene="clpB"
/locus_tag="BMA10229_A0030"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene complement(30034..30456)
/locus_tag="BMA10229_A0031"
/db_xref="GeneID:4792099"
CDS complement(30034..30456)
/locus_tag="BMA10229_A0031"
/note="identified by match to protein family HMM PF06078"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026040.1"
/db_xref="GI:124386247"
/db_xref="GeneID:4792099"
/translation="MGLLDIVGGLIGGQGGNQNALVSAALEFINNQPGGLNGLIEKFN
AGGAGDIIGSWIGTGENQPISPETLQNVLGSDTIGALAQKVGIDPQQASGILAQVLPH
VVNGATPNGEVPAGGQLDTSNVLGTLSQLASLLGNKQA"
misc_feature complement(30091..>30360)
/locus_tag="BMA10229_A0031"
/note="Bacterial protein of unknown function (DUF937);
Region: DUF937; cl01528"
/db_xref="CDD:207439"
gene complement(30535..31230)
/locus_tag="BMA10229_A0032"
/db_xref="GeneID:4791738"
CDS complement(30535..31230)
/locus_tag="BMA10229_A0032"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026041.1"
/db_xref="GI:124383988"
/db_xref="GeneID:4791738"
/translation="MLERDARLAPRAGFVPTATHPFHQKGAPAMLKKLLMLVVALSLS
LTAALAAAVEVNTADQAALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGA
KSVAHLEAAGLTIGGSTTPPTGAKAKTGTAKPAATATPAPAPAPAPTTSSATPTPSAA
TPAPATATPSTAASAPAAKKSRSSKKQDKAAAASAAAQASAPAAASTTKAKGSKKSRK
NKAATPASAASGA"
misc_feature complement(30922..31074)
/locus_tag="BMA10229_A0032"
/note="Helix-hairpin-helix motif; Region: HHH_3;
pfam12836"
/db_xref="CDD:205097"
gene 31499..31993
/locus_tag="BMA10229_A0033"
/db_xref="GeneID:4791070"
CDS 31499..31993
/locus_tag="BMA10229_A0033"
/note="identified by match to protein family HMM PF00376;
match to protein family HMM PF09278"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_001026042.1"
/db_xref="GI:124384343"
/db_xref="GeneID:4791070"
/translation="MSNAPKQPSPRALTIGQVAALVGVSTHTLRYYEQAGLLRSISRT
PSGHRLYAPADLDWLRFVMRLKATGMPIAGMQAFAELRAQGDATFGERRALLAAHRDA
VRAQIGALQTNLDSIVEKIAYYERAERDAVRQARTTTQSQPDKDERWSNAFRKTATRA
AGTS"
misc_feature 31535..31879
/locus_tag="BMA10229_A0033"
/note="Predicted transcriptional regulators
[Transcription]; Region: SoxR; COG0789"
/db_xref="CDD:31132"
misc_feature 31535..31873
/locus_tag="BMA10229_A0033"
/note="Helix-Turn-Helix DNA binding domain of the
MerR-like transcription regulators YyaN and YraB; Region:
HTH_YyaN; cd01109"
/db_xref="CDD:133384"
misc_feature order(31538..31546,31586..31588,31637..31645)
/locus_tag="BMA10229_A0033"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133384"
misc_feature order(31679..31681,31688..31690,31700..31705,31730..31732,
31784..31786,31796..31798,31814..31816,31826..31828,
31835..31840)
/locus_tag="BMA10229_A0033"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:133384"
gene 31942..32340
/locus_tag="BMA10229_A0034"
/db_xref="GeneID:4793750"
CDS 31942..32340
/locus_tag="BMA10229_A0034"
/note="identified by match to protein family HMM PF02627"
/codon_start=1
/transl_table=11
/product="carboxymuconolactone decarboxylase"
/protein_id="YP_001026043.1"
/db_xref="GI:124385510"
/db_xref="GeneID:4793750"
/translation="MEQRISEDRYTRGWNKLKEIDGKVGERVVAALAPIAPDFGRLLV
EFGFGDIYSRPQLDLKSREIATIASLATLGHAQPQLKVHIEAALNVGCTRDEIVEVFM
QMALYAGFPAALNALFAARDVFGQRDAAHA"
misc_feature 31960..32325
/locus_tag="BMA10229_A0034"
/note="Carboxymuconolactone decarboxylase family; Region:
CMD; cl00460"
/db_xref="CDD:213098"
gene complement(32731..34086)
/locus_tag="BMA10229_A0035"
/db_xref="GeneID:4792624"
CDS complement(32731..34086)
/locus_tag="BMA10229_A0035"
/note="identified by match to protein family HMM PF01554;
match to protein family HMM TIGR00797"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein NorM"
/protein_id="YP_001026044.1"
/db_xref="GI:124385828"
/db_xref="GeneID:4792624"
/translation="MFGDIRRIAGLAWSVLVGQLAIIAFGVIDTAMVGRFSALDLAAL
GLGMSIYVSIYIGLTGILSALQPIAGQLYGARRYAEIGEEVRQAMWLAVLLAAPGFLL
LHFPHPLLRLAHAPAELTDRTVAYLRILSFGLPASLLFRIYNALTNAAGKPRLAMILQ
VGALAVKVPLNLWFIFGGLGVPALGGPGCGLASTLINWALAIVGFTLLARLDVFEPLA
IFARFTRPVWHRQKALLVLGVPMGLSYLIEVTSYTFMALFIAQFGTTTLAGHQIAGNI
DAVLYMTPLSIGVASSTLVARALGAGRFDEARALGRHGVALACGLACAYGIVVFALRP
LIVSGYTPNPAVAAAAMPLVAIVTVYHFFDALQITTAFVLRAHKMAVVPTAIYAIALW
GVGLGGGYLLGFDVGGAVPAQFTGARGFWIASAASLMLAGGGLALYLRHIGKRETGGA
R"
misc_feature complement(33064..34044)
/locus_tag="BMA10229_A0035"
/note="putative efflux protein, MATE family; Region: matE;
TIGR00797"
/db_xref="CDD:162043"
misc_feature complement(33568..34044)
/locus_tag="BMA10229_A0035"
/note="MatE; Region: MatE; pfam01554"
/db_xref="CDD:190033"
misc_feature complement(32917..33369)
/locus_tag="BMA10229_A0035"
/note="MatE; Region: MatE; pfam01554"
/db_xref="CDD:190033"
gene complement(34090..35838)
/locus_tag="BMA10229_A0036"
/db_xref="GeneID:4792223"
CDS complement(34090..35838)
/locus_tag="BMA10229_A0036"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026045.1"
/db_xref="GI:124383703"
/db_xref="GeneID:4792223"
/translation="MKPVVRLTASATRALPRWLLLTLCIVYAAFGLFGRDPWKNEDAA
GFGVMWTMAQGGLHDWLLPNLVGKFVTSDGPLGYWLGGLAIRALPWVDASNASRIYTG
VLFCVACAFVWYAAYLLGRRAEIQPFKYAFGGEPEPRDYGRTLADGALLVLLACFGLA
ERGHETTPQLAQFACIATFVYGLVRAIDKPTQGALWWGLALGLVALSGNPVLVAALAL
GTLALYLVTPEIRCVQLPAIGLPLAVAVFAIWPLAAYIAFPDDANWFFNQWLHGSLMR
FSGPPTTVLAYAAKNLPLFTWPAWPLAIWAWVSWAGLRRRPHIAIPLSVAAPLLALVI
LQSQQTNRMYMLLLPALAVIATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLAS
LTGFPHPLARNLGRLVPGYEPHFKVLSFVCAVAATACWLMLVRWRISRQPKVLWRSVV
LSSAGTTLMWVLLMTLWLPIVNYSRTYRDVAQQIAAHLPSDYECISPVRLGDAQIATF
AYFGDMHFSFTDDCDVILRQDHADFGEPSSISQYVWRLVWEGRRVADRDERFRLYERI
ERPKTPIKRRPPRKAR"
misc_feature complement(<34489..35817)
/locus_tag="BMA10229_A0036"
/note="4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane]; Region: ArnT; COG1807"
/db_xref="CDD:31992"
gene 35866..36108
/locus_tag="BMA10229_A0038"
/db_xref="GeneID:4790672"
CDS 35866..36108
/locus_tag="BMA10229_A0038"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026046.1"
/db_xref="GI:124385132"
/db_xref="GeneID:4790672"
/translation="MPARERRAVSGIRHCRRAGRHASANRRARAAPVARGIDRDKKRQ
PGLPFLRNRPGAKPDADAVAKLTSRPCRWRVRRTCS"
gene complement(36062..36325)
/gene="rpmE2"
/locus_tag="BMA10229_A0037"
/db_xref="GeneID:4792994"
CDS complement(36062..36325)
/gene="rpmE2"
/locus_tag="BMA10229_A0037"
/note="RpmE2; there appears to be two types of ribosomal
proteins L31 in bacterial genomes; some contain a CxxC
motif while others do not; Bacillus subtilis has both
types; the proteins in this cluster do not have the CXXC
motif; RpmE is found in exponentially growing Bacilli
while YtiA was found after exponential growth; expression
of ytiA is controlled by a zinc-specific transcriptional
repressor; RpmE contains one zinc ion and a CxxC motif is
responsible for this binding; forms an RNP particle along
with proteins L5, L18, and L25 and 5S rRNA; found
crosslinked to L2 and L25 and EF-G; may be near the
peptidyltransferase site of the 50S ribosome"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L31"
/protein_id="YP_001026047.1"
/db_xref="GI:124384089"
/db_xref="GeneID:4792994"
/translation="MKQGIHPDYREVVFQDMSNGFKFITRSTIQTRETIEFEGKTYPL
AKIEVSSESHSFYTGQQKIMDTAGRVEKFKNKFGARASGKAAK"
misc_feature complement(36068..36325)
/gene="rpmE2"
/locus_tag="BMA10229_A0037"
/note="50S ribosomal protein L31 type B; Reviewed; Region:
rpmE2; PRK01678"
/db_xref="CDD:234969"
gene complement(36540..37385)
/locus_tag="BMA10229_A0039"
/db_xref="GeneID:4790990"
CDS complement(36540..37385)
/locus_tag="BMA10229_A0039"
/note="identified by match to protein family HMM PF06167"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026048.1"
/db_xref="GI:124384517"
/db_xref="GeneID:4790990"
/translation="MLSKLNQWLDARRRDRALRSHPIPDVLWRETLERLPFLSYLSNE
DRARLRETTSLFLAQKSFSTAHGLELTDAIVVGIAAQACVPVLNLGLDLYRGWVGIVV
YPGEFVIRKTVEDEDGVVHEVEHDASGEAWDGGPVILSWEDVQMADGSDAYNVVIHEF
AHKIDMMSGAADGHPPLFRRWHAPALDAERWADVFDHAYDQFCDRVDAVPERAWARFE
RDSLIYPYAADHPSEFFAVCSEALFVKPRSFEAEFPELYRLLARYYRQDPARTGCLAG
SAAHV"
misc_feature complement(36591..37325)
/locus_tag="BMA10229_A0039"
/note="Phosphoenolpyruvate:glucose-phosphotransferase
regulator; Region: MtfA; pfam06167"
/db_xref="CDD:148022"
gene complement(37428..38984)
/locus_tag="BMA10229_A0040"
/db_xref="GeneID:4793461"
CDS complement(37428..38984)
/locus_tag="BMA10229_A0040"
/note="identified by match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="major facilitator transporter"
/protein_id="YP_001026049.1"
/db_xref="GI:124383554"
/db_xref="GeneID:4793461"
/translation="MSAAPGRPPLWSAANLRGDFFPWVLAIVTGLDYFDNAAFSFFAS
YIAGEINASPDELVWASSAYAVTAVLGILQQQWWVDRLGHRRYVAGCMLMFSLGAMAA
AAADTSLQLAFARGFQGYFIGPMMGACRILIQVSFAPKDRPPATRAFLIMLLLGSALA
PIAGGLLVAHFTWRALFACTAPAGILFAALAFVALPDSGHTPPDERGGAHFWPYVIFA
LAQGALQIVMQQVRFQLFAGSPLLVLLAVGGLAALAWFGHHQWHHPAPLVRLHAFRER
TFRVGLLLYLFYYYETTGYSYLISRFLETGLGYPIENAGRLVGTMSLISASALFVYLR
YAKLLTHKKWIIVPGFALAAFAALWMTRMSPEVGEAALVAPLLMRGLLLLFIVLPVAN
LTFRVFAIDEYSHGYRLKNIVRQLTISFATASVIIVEQHRLAVHQTRLVEQANVYNPL
FRQTLDTLTRGFAAAGHAFSDAHALALVTVSRTIAQQASFLASLDGFYFLAGVAICGG
LFAAWQKEID"
misc_feature complement(<38397..38918)
/locus_tag="BMA10229_A0040"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(38514..38516,38532..38537,38544..38549,
38583..38585,38592..38597,38604..38609,38616..38621,
38757..38762,38766..38771,38781..38783,38790..38795,
38802..38804,38853..38858,38862..38870,38877..38879))
/locus_tag="BMA10229_A0040"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(37446..38849)
/locus_tag="BMA10229_A0040"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
gene complement(38981..39481)
/locus_tag="BMA10229_A0041"
/db_xref="GeneID:4793914"
CDS complement(38981..39481)
/locus_tag="BMA10229_A0041"
/note="identified by match to protein family HMM PF00376"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_001026050.1"
/db_xref="GI:124386091"
/db_xref="GeneID:4793914"
/translation="MSDAPPTLLLTVRDAAERLGVTPRTLKYYEERGLVTPSRSEGRY
RLYDAADLERFERILRLRALGFSLHGITEMLKRPLEPAGDGRRRYSDASLRDIHADLS
QQIATLDARIAAAQRELKEVRALKQELQHDIDYVERRLAGENPDELIAQRRAAARARK
TGGTSA"
misc_feature complement(39167..39454)
/locus_tag="BMA10229_A0041"
/note="Helix-Turn-Helix DNA binding domain of
transcription regulators from the MerR superfamily;
Region: HTH_MerR-SF; cl02600"
/db_xref="CDD:207663"
misc_feature complement(39251..39454)
/locus_tag="BMA10229_A0041"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature complement(order(39347..39355,39401..39403,39443..39451))
/locus_tag="BMA10229_A0041"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133389"
gene complement(39618..40880)
/gene="rho"
/locus_tag="BMA10229_A0042"
/db_xref="GeneID:4791943"
CDS complement(39618..40880)
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="An RNA-DNA helicase that actively releases nascent
mRNAs from paused transcription complexes"
/codon_start=1
/transl_table=11
/product="transcription termination factor Rho"
/protein_id="YP_001026051.1"
/db_xref="GI:124385334"
/db_xref="GeneID:4791943"
/translation="MHLSELKSLHVSELIEMANGLEIENANRLRKQELMFAILKKRAK
TGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVR
TPKDGERYFALVKVDKVNGQPPKASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGR
IIDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTE
MQRSVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNT
VIPASGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEE
FKGTGNMEVHLERRLAEKRVYPSINLNKSGTRREEMLIKPEILQKIWVLRKFIHDMDE
VEAMEFLLDKIRQTKNNAEFFDLMRRGG"
misc_feature complement(39627..40880)
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="transcription termination factor Rho; Provisional;
Region: rho; PRK09376"
/db_xref="CDD:181809"
misc_feature complement(40740..40868)
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="Rho termination factor, N-terminal domain; Region:
Rho_N; pfam07498"
/db_xref="CDD:203652"
misc_feature complement(40527..40730)
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
protein is a transcription termination factor in most
bacteria. In bacteria, there are two distinct mechanisms
for mRNA transcription termination. In intrinsic
termination, RNA polymerase and nascent mRNA...; Region:
Rho_CSD; cd04459"
/db_xref="CDD:88425"
misc_feature complement(order(40551..40559,40566..40568,40641..40643,
40647..40649,40683..40685,40689..40691,40695..40697,
40707..40709,40713..40715))
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88425"
misc_feature complement(39669..40415)
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="Transcription termination factor rho is a bacterial
ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
monomer consists of an N-terminal domain of the OB fold,
which is responsible for binding to cysteine rich
nucleotides. This alignment is of the...; Region:
rho_factor; cd01128"
/db_xref="CDD:29994"
misc_feature complement(order(39726..39728,39738..39740,39780..39785,
39855..39857,39861..39875,39879..39884,39957..39959,
39966..39968,39975..39977,39984..39989,39996..39998,
40029..40031,40362..40364))
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29994"
misc_feature complement(40326..40349)
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="Walker A motif; other site"
/db_xref="CDD:29994"
misc_feature complement(order(39816..39818,40323..40334,40338..40340))
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29994"
misc_feature complement(40086..40100)
/gene="rho"
/locus_tag="BMA10229_A0042"
/note="Walker B motif; other site"
/db_xref="CDD:29994"
gene complement(40944..41069)
/locus_tag="BMA10229_A0043"
/db_xref="GeneID:4792652"
CDS complement(40944..41069)
/locus_tag="BMA10229_A0043"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026052.1"
/db_xref="GI:124384665"
/db_xref="GeneID:4792652"
/translation="MRPAHVLSTGNTCAAKSADRSLKPESAYARIKNVDKTHINL"
gene complement(41076..41402)
/gene="trx"
/locus_tag="BMA10229_A0044"
/db_xref="GeneID:4793429"
CDS complement(41076..41402)
/gene="trx"
/locus_tag="BMA10229_A0044"
/note="identified by match to protein family HMM PF00085;
match to protein family HMM TIGR01068"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_001026053.1"
/db_xref="GI:124384408"
/db_xref="GeneID:4793429"
/translation="MSEQIKHISDASFEQDVVKSDKPVLLDFWAEWCGPCKMIAPILD
EVAKDYGDKLQIAKINVDENQATPAKFGVRGIPTLILFKNGAVAAQKVGALSKSQLTA
FLDSHL"
misc_feature complement(41088..41372)
/gene="trx"
/locus_tag="BMA10229_A0044"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:239245"
misc_feature complement(41142..41342)
/gene="trx"
/locus_tag="BMA10229_A0044"
/note="Thioredoxin-like; Region: Thioredoxin_8; pfam13905"
/db_xref="CDD:222448"
misc_feature complement(order(41295..41297,41304..41306))
/gene="trx"
/locus_tag="BMA10229_A0044"
/note="catalytic residues [active]"
/db_xref="CDD:239245"
gene 42066..44543
/locus_tag="BMA10229_A0045"
/db_xref="GeneID:4793674"
CDS 42066..44543
/locus_tag="BMA10229_A0045"
/EC_number="2.7.7.7"
/note="catalyzes the DNA-template-directed extension of
the 3'-end of a DNA strand; the tau chain serves as a
scaffold to help in the dimerizaton of the alpha,epsilon
and theta core complex; the gamma chain seems to interact
with the delta and delta' subunits to transfer the beta
subunit on the DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunits gamma and tau"
/protein_id="YP_001026054.1"
/db_xref="GI:124386554"
/db_xref="GeneID:4793674"
/translation="MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFT
GTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVD
EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ
KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDAL
SLTDQAIAYSANEVTETAVSGMLGTLDQTYMVRLLDALAAADGPQILAVADEMALRSL
SFSAALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVG
RGELGLAPDEYAGFTMTLLRMLAFEPATTGGGAPAGGVPARVAGAAPKSGARAAAAVG
ASAVPAVTGATGATGAALAPKAAAARAATRAEAPPAAPARPATAERGDDASDGDAPVP
AKANARASADSRCDERDAQPPADSGSASGAASSAPPDTAFESAPRAAAPSAATPAAVP
DARAPAAASAEDAVEAAAPAAPESRPPTPAAGAPVSRATGAAAALDVLRNAGMRVSSG
RGAGAARPAAGPAASPTKPAPRAQVSVPTPRARAATGDAPPNGAARAEARAESRGAPP
PWEDIPPDDYVPLSMDDGFIPPDDGFVPVFDSGPDDVRVAPKPAPAPPVDTRPLPEPI
PLDAIGYDGEWPTLAASLPLKGVAYQLAFNSELTAADGGTLKLAVPVPQYADAAQVAK
LKAALADALGKPVDVAVEVGPARRTAAALAAAERAKRQREAEQEMSADPFVQQLLREF
GASIVEGSIRPVGAEAGAADGASPTLH"
misc_feature 42072..43133
/locus_tag="BMA10229_A0045"
/note="DNA polymerase III, subunit gamma and tau; Region:
dnaX_nterm; TIGR02397"
/db_xref="CDD:162839"
misc_feature 42120..42575
/locus_tag="BMA10229_A0045"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 42198..42221
/locus_tag="BMA10229_A0045"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(42201..42224,42441..42443,42534..42536)
/locus_tag="BMA10229_A0045"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 42429..42446
/locus_tag="BMA10229_A0045"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 42570..42572
/locus_tag="BMA10229_A0045"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 42759..43142
/locus_tag="BMA10229_A0045"
/note="DNA polymerase III subunits gamma and tau domain
III; Region: DNA_pol3_gamma3; pfam12169"
/db_xref="CDD:152604"
gene 44640..44966
/locus_tag="BMA10229_A0046"
/db_xref="GeneID:4791503"
CDS 44640..44966
/locus_tag="BMA10229_A0046"
/note="identified by match to protein family HMM PF02575;
match to protein family HMM TIGR00103"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026055.1"
/db_xref="GI:124385489"
/db_xref="GeneID:4791503"
/translation="MMKGQLAGLMKQAQQMQENMKKMQEQLALIEVEGQSGAGLVKVT
MTCRNEVRRVAIDPSLLADDKDMLEDLVAAAFNDAVRKAEATSQEKMSGMTSGLPLPP
GFKLPF"
misc_feature 44643..44927
/locus_tag="BMA10229_A0046"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:234669"
gene 44998..45600
/gene="recR"
/locus_tag="BMA10229_A0047"
/db_xref="GeneID:4792602"
CDS 44998..45600
/gene="recR"
/locus_tag="BMA10229_A0047"
/note="involved in a recombinational process of DNA
repair, independent of the recBC complex"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="YP_001026056.1"
/db_xref="GI:124385650"
/db_xref="GeneID:4792602"
/translation="MSIKPPSALSELVEALRALPGVGPKSAQRIAYHLMQHDREGAER
LGRSLLFATEHLRHCEKCNTFTEAQICEVCSDPERDPALLCVVETPADQIMLEQTMTY
RGLYFVLMGRLSPLDGIGPKEIHFDRLVRRASDGIVKEVVLATNFTNEGEATAHYLGQ
TLKARGLAVTRLARGVPVGGELEYVDAGTIARAMLDRRTL"
misc_feature 45007..45597
/gene="recR"
/locus_tag="BMA10229_A0047"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:178844"
misc_feature 45115..45237
/gene="recR"
/locus_tag="BMA10229_A0047"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature 45244..45576
/gene="recR"
/locus_tag="BMA10229_A0047"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature order(45259..45264,45271..45273,45433..45435,45439..45441,
45445..45447)
/gene="recR"
/locus_tag="BMA10229_A0047"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature order(45259..45261,45433..45435)
/gene="recR"
/locus_tag="BMA10229_A0047"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature order(45277..45285,45289..45294,45415..45417,45421..45423,
45427..45429,45436..45438,45472..45474,45502..45537,
45541..45543,45556..45558,45562..45564,45568..45576)
/gene="recR"
/locus_tag="BMA10229_A0047"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene 45670..46875
/locus_tag="BMA10229_A0049"
/db_xref="GeneID:4792404"
CDS 45670..46875
/locus_tag="BMA10229_A0049"
/note="identified by match to protein family HMM PF02515"
/codon_start=1
/transl_table=11
/product="CAIB/BAIF family protein"
/protein_id="YP_001026057.1"
/db_xref="GI:124384295"
/db_xref="GeneID:4792404"
/translation="MSATPGPLAGVKVLELGTLIAGPFAARLLAEFGAQVIKIEDPNG
GDPLRKWRKLYPEAGGTSLWWAVQARNKKSVTINLKSDEGKEIVRRLARDADIVVENF
RPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PELPPPRIGISIGDSIAALHGVIGALMALHHRNVNGGAGQVVDVALYEAVFNMMESVV
PEYGVYGLVRERTGASLPGIVPSNTYPCRDGSVVIGGNSDPIFKRLMKAIGRDDLADD
PALAHNDGRVPRTGEIDAAIGAWLAERTIDDALAVLNAADVPASRIYSVADMFDDPQF
VARQMIQRFKLADGAQIPLPNVTPKLSGTPGETRWLGPALGEHTDEVLGTLGYDAPAI
AALRARRAI"
misc_feature 45670..46833
/locus_tag="BMA10229_A0049"
/note="Predicted acyl-CoA transferases/carnitine
dehydratase [Energy production and conversion]; Region:
CaiB; COG1804"
/db_xref="CDD:224717"
misc_feature 45892..46428
/locus_tag="BMA10229_A0049"
/note="CoA-transferase family III; Region: CoA_transf_3;
pfam02515"
/db_xref="CDD:217078"
gene complement(46827..46955)
/locus_tag="BMA10229_A0048"
/db_xref="GeneID:4793701"
CDS complement(46827..46955)
/locus_tag="BMA10229_A0048"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026058.1"
/db_xref="GI:124384956"
/db_xref="GeneID:4793701"
/translation="MRESDGPERFARRARRRANACRAALGAQIARLARSAAIAGAS"
gene 46980..47741
/gene="surE"
/locus_tag="BMA10229_A0050"
/db_xref="GeneID:4793178"
CDS 46980..47741
/gene="surE"
/locus_tag="BMA10229_A0050"
/EC_number="3.1.3.2"
/note="catalyzes the conversion of a phosphate monoester
to an alcohol and a phosphate"
/codon_start=1
/transl_table=11
/product="stationary phase survival protein SurE"
/protein_id="YP_001026059.1"
/db_xref="GI:124384804"
/db_xref="GeneID:4793178"
/translation="MRILLSNDDGYLAPGLAALYEALRPLAEILVMAPEQNCSGASNS
LTLSRPLSVSRSAATGFYYVNGTPTDSVHVALTGMLDTKPDLVVSGINNGQNMGDDTL
YSGTVAAATEGIMFGVPAIAFSLVHKEWAHLGDAARVAAEIVRHYLDHPLPGQPLLNV
NIPNLPYEELKGWRVTRLGKRHPSQPVIRQTNPRGEPIYWIGAAGDALDASEGTDFHA
TASGYVSITPLQLDLTHTQMLGATRDWARAGSGAS"
misc_feature 46980..47714
/gene="surE"
/locus_tag="BMA10229_A0050"
/note="5'(3')-nucleotidase/polyphosphatase; Provisional;
Region: surE; PRK00346"
/db_xref="CDD:178982"
gene 47738..48706
/gene="pcm"
/locus_tag="BMA10229_A0051"
/db_xref="GeneID:4793207"
CDS 47738..48706
/gene="pcm"
/locus_tag="BMA10229_A0051"
/EC_number="2.1.1.77"
/note="identified by match to protein family HMM PF01135;
match to protein family HMM TIGR00080"
/codon_start=1
/transl_table=11
/product="protein-L-isoaspartate O-methyltransferase"
/protein_id="YP_001026060.1"
/db_xref="GI:124386039"
/db_xref="GeneID:4793207"
/translation="MSGERAKRFPLALEDLKREPRKPEGRVAERQAAGDAARQRLTAA
AAVPAAASPIVPERRAPHGGVFAAKPARAKQHAPAAPGAAKRAPQGGAKQGDRSAAPN
VALSGALALTSERVRERMVERLRANGVADPRVLAAMSAVPRHMFVDPGLAAQAYEDAA
LPIGHQQTISKPSVVARMIELAAAGRALERVLEIGTGCGYQAAVLSRVARDVYSIERV
RPLYERAKLNLRPLRVPNIRLHYGDGRVGLPAAAPFDAIVIAAAGLDVPRALLEQLAI
GGRLVAPVGEQAGEQVLTLVERVAPAQWRESRLDRVFFVPLKSGVI"
misc_feature 48113..48700
/gene="pcm"
/locus_tag="BMA10229_A0051"
/note="protein-L-isoaspartate O-methyltransferase;
Reviewed; Region: pcm; PRK00312"
/db_xref="CDD:178974"
misc_feature 48305..>48472
/gene="pcm"
/locus_tag="BMA10229_A0051"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(48317..48337,48383..48388,48461..48469)
/gene="pcm"
/locus_tag="BMA10229_A0051"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 48718..49608
/locus_tag="BMA10229_A0052"
/db_xref="GeneID:4792072"
CDS 48718..49608
/locus_tag="BMA10229_A0052"
/note="identified by match to protein family HMM PF01476;
match to protein family HMM PF01551"
/codon_start=1
/transl_table=11
/product="lipoprotein NlpD"
/protein_id="YP_001026061.1"
/db_xref="GI:124385128"
/db_xref="GeneID:4792072"
/translation="MLRAMQNNRSKVPLSLAQRAICMAAFALLGACATRLDQAPVVDR
SGSLGTTAATQPPAPLPPAPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLTNPNQI
EVDQLLRVSPTAGGATAAAPAAGAVVTPPLSSGPSNGAAAVPPIYGSGSTASAAPSAP
AASASSEPSAPAANGNVSFAWPVRGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVV
YAGNGLRGYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVML
HFEVRRQGKPVDPLKYLPPQ"
misc_feature 48916..49047
/locus_tag="BMA10229_A0052"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 49297..49584
/locus_tag="BMA10229_A0052"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 49620..50699
/gene="rpoS"
/locus_tag="BMA10229_A0053"
/db_xref="GeneID:4792990"
CDS 49620..50699
/gene="rpoS"
/locus_tag="BMA10229_A0053"
/note="sigma factors are initiation factors that promote
the attachment of RNA polymerase to specific initiation
sites and are then released; this sigma factor controls a
regulon of genes required for protection against external
stresses"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor RpoS"
/protein_id="YP_001026062.1"
/db_xref="GI:124385284"
/db_xref="GeneID:4792990"
/translation="MPKSKRHDPQAESEKISRAKQASVERTGASADEDEDAADNERDY
ESRDADPDESGEGRGDAQPDLDDFRALLQAELTADTIQHYLNRISVKPLLTVEEEQRY
SRLAKAGEFEARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPT
RGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKNSMSTGEA
AERREASIDDIAYLTGKTAEEVTDILALNEHTASLDAPLDLDPASSLLDLLPDDQSQS
PDAEVQHRELETLTRAWLSRLSDKHRHVIERRFGLNHIEPATLEELADEMGLTRERVR
QIQQEALVRLKRFFASNGVRKDAVL"
misc_feature 49767..50696
/gene="rpoS"
/locus_tag="BMA10229_A0053"
/note="RNA polymerase sigma factor RpoS; Validated;
Region: PRK05657"
/db_xref="CDD:235548"
misc_feature 49851..49961
/gene="rpoS"
/locus_tag="BMA10229_A0053"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature 49968..50180
/gene="rpoS"
/locus_tag="BMA10229_A0053"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature 50481..50654
/gene="rpoS"
/locus_tag="BMA10229_A0053"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(50511..50513,50541..50543,50571..50576,50604..50606,
50610..50615,50619..50627,50631..50636,50640..50642)
/gene="rpoS"
/locus_tag="BMA10229_A0053"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 50707..51483
/locus_tag="BMA10229_A0054"
/db_xref="GeneID:4792783"
CDS 50707..51483
/locus_tag="BMA10229_A0054"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026063.1"
/db_xref="GI:124384361"
/db_xref="GeneID:4792783"
/translation="MTPILVFDIETIPDVDGIRRLEDLPADLADAEVAEHAFAARREK
TGSDFLPHHLQRIAAISCVFRDNNGFRVRSLGTPDDPEATLIQSFYRVIEKYTPQLVS
WNGGGFDLPVLHYRALVHGVAAPRYWDMGEDDRDFKWNNYLSRYHTRHLDLMDLLALY
QPRASAPLDALAKLCGFPGKLGMDGSQVWTAFREGRIEEIRNYCETDVVNTYLLYCRF
QQMRGGLSPAEYTEEIALVKNTLVQEPAPHWAEYLAAFDA"
misc_feature 50716..51357
/locus_tag="BMA10229_A0054"
/note="Uncharacterized bacterial subgroup of the DEDDy
3'-5' exonuclease domain of family-B DNA polymerases;
Region: DNA_polB_like1_exo; cd05782"
/db_xref="CDD:99825"
misc_feature order(50728..50739,51013..51018,51025..51033,51205..51210,
51313..51315,51325..51327)
/locus_tag="BMA10229_A0054"
/note="active site"
/db_xref="CDD:99825"
misc_feature order(50728..50730,50734..50736,51031..51033,51313..51315,
51325..51327)
/locus_tag="BMA10229_A0054"
/note="catalytic site [active]"
/db_xref="CDD:99825"
misc_feature order(50731..50739,51013..51018,51025..51030,51205..51210,
51313..51315,51325..51327)
/locus_tag="BMA10229_A0054"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99825"
misc_feature 50845..51474
/locus_tag="BMA10229_A0054"
/note="Predicted 3'-5' exonuclease related to the
exonuclease domain of PolB; Region: DNA_pol_B_exo2;
pfam10108"
/db_xref="CDD:220575"
gene 51493..51690
/locus_tag="BMA10229_A0056"
/db_xref="GeneID:4793768"
CDS 51493..51690
/locus_tag="BMA10229_A0056"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026064.1"
/db_xref="GI:124386331"
/db_xref="GeneID:4793768"
/translation="MRGVRAAAHRMGVARSVGFESPLVARQPRLAGRRFAPLEPLALL
DPFRSACASRRYASLNSSTIG"
gene complement(51657..52517)
/locus_tag="BMA10229_A0055"
/db_xref="GeneID:4791641"
CDS complement(51657..52517)
/locus_tag="BMA10229_A0055"
/note="identified by match to protein family HMM PF03372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026065.1"
/db_xref="GI:124383859"
/db_xref="GeneID:4791641"
/translation="MRLISWNVQWGRDANGTVDLARTVDAARGLGDFDVLCAQELTRG
FHALPGGPSGDQYAELAALLPGYAVFDAIGVDLPPLEPGAPRRQFGNALATRLPVERA
LRHALPWPASAAAPSMPRCALEVTLRAPFGPLRVVVTHLEYYSAQQRLAQVDALRRLH
REAAAHARASAPPETPASPFAPSARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFV
DAWLARHPGKTPPMTAGVYDTAQWSEGPMTCDFAFVTDTLVRRLSRCEIDGTVRASDH
QPIVLELSDA"
misc_feature complement(51660..52517)
/locus_tag="BMA10229_A0055"
/note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
superfamily; Region: EEP; cl00490"
/db_xref="CDD:207076"
misc_feature complement(order(51930..51932,51936..51938,52098..52100,
52398..52400,52497..52499))
/locus_tag="BMA10229_A0055"
/note="putative catalytic site [active]"
/db_xref="CDD:197306"
misc_feature complement(52398..52400)
/locus_tag="BMA10229_A0055"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197306"
misc_feature complement(order(51930..51932,52098..52100))
/locus_tag="BMA10229_A0055"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197306"
misc_feature complement(order(51690..51695,51768..51770,51930..51932,
51936..51938))
/locus_tag="BMA10229_A0055"
/note="putative catalytic site [active]"
/db_xref="CDD:197306"
misc_feature complement(order(51690..51692,51930..51932))
/locus_tag="BMA10229_A0055"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197306"
misc_feature complement(51693..51695)
/locus_tag="BMA10229_A0055"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197306"
gene 52595..53992
/gene="rumA"
/locus_tag="BMA10229_A0057"
/db_xref="GeneID:4791121"
CDS 52595..53992
/gene="rumA"
/locus_tag="BMA10229_A0057"
/EC_number="2.1.1.-"
/note="in Escherichia coli this enzyme catalyzes the
SAM-dependent methylation of U1939 in the 23S ribomal RNA;
binds an iron-sulfur cluster [4Fe-4S]"
/codon_start=1
/transl_table=11
/product="23S rRNA 5-methyluridine methyltransferase"
/protein_id="YP_001026066.1"
/db_xref="GI:124385031"
/db_xref="GeneID:4791121"
/translation="MSEAVPLSTRRASSAGDAPGRAPVLDIDSLDMEARGVGRVVDEN
GEPGKVIFVEGALPGERVTYSSFRRKPTYEQAQVVDILRPSVMRTQPKCAFFGTCGGC
SMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK
GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQLSIRDRMPQIELAVGAR
VTALVLRVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPEF
GIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLARE
VVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRALGAFDKFLVDPPRE
GALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMF
PHTSHVESIALFERD"
misc_feature 52661..53989
/gene="rumA"
/locus_tag="BMA10229_A0057"
/note="23S rRNA m(5)U1939 methyltransferase; Reviewed;
Region: rumA; PRK13168"
/db_xref="CDD:183875"
misc_feature 53531..53809
/gene="rumA"
/locus_tag="BMA10229_A0057"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(53543..53563,53609..53614,53690..53698,53756..53758)
/gene="rumA"
/locus_tag="BMA10229_A0057"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(54066..54764)
/locus_tag="BMA10229_A0058"
/db_xref="GeneID:4793072"
CDS complement(54066..54764)
/locus_tag="BMA10229_A0058"
/note="identified by match to protein family HMM PF01027"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026067.1"
/db_xref="GI:124385615"
/db_xref="GeneID:4793072"
/translation="MNDYPYNFGRGGAIGTAETRNRVLRNTYWLLALSMVPTVLGAWV
GVATGFSLFAATSPMMSLLAFFAIAFGFMFAIERTKNSSAGVFVLLGFTFFMGLMLSR
LLSFILGFSNGPSLIMLAFGGTGVIFAAMATVATVSKRDFSGLGKWLFVGAIVLLLAM
VANMFLQLPALMLTVSVLAIVIFSAYMLFDVQRVVNGGETNYISATLAIYLDLYNVFT
NLLALLGIFGGNRN"
misc_feature complement(54078..54710)
/locus_tag="BMA10229_A0058"
/note="YccA-like proteins; Region: YccA_like; cd10433"
/db_xref="CDD:198415"
gene 55013..55438
/gene="ndk"
/locus_tag="BMA10229_A0059"
/db_xref="GeneID:4792369"
CDS 55013..55438
/gene="ndk"
/locus_tag="BMA10229_A0059"
/EC_number="2.7.4.6"
/note="catalyzes the formation of nucleoside triphosphate
from ATP and nucleoside diphosphate"
/codon_start=1
/transl_table=11
/product="nucleoside diphosphate kinase"
/protein_id="YP_001026068.1"
/db_xref="GI:124384473"
/db_xref="GeneID:4792369"
/translation="MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSR
ADAEKFYAVHAERPFFKDLVDFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGT
IRADFADSIDANAVHGSDAPETARAEVAFFFPEMNVYSR"
misc_feature 55022..55411
/gene="ndk"
/locus_tag="BMA10229_A0059"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:58528"
misc_feature order(55043..55045,55163..55165,55187..55189,55271..55273,
55289..55291,55322..55324,55352..55354,55361..55363,
55367..55372,55394..55396)
/gene="ndk"
/locus_tag="BMA10229_A0059"
/note="active site"
/db_xref="CDD:58528"
misc_feature order(55055..55057,55070..55078,55085..55087,55094..55096,
55121..55129)
/gene="ndk"
/locus_tag="BMA10229_A0059"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:58528"
gene 55480..56616
/locus_tag="BMA10229_A0060"
/db_xref="GeneID:4793599"
CDS 55480..56616
/locus_tag="BMA10229_A0060"
/note="identified by match to protein family HMM PF04055;
match to protein family HMM TIGR00048"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_001026069.1"
/db_xref="GI:124383540"
/db_xref="GeneID:4793599"
/translation="MAGETIVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAA
DFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEE
TRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPN
GKAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDR
LGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCM
LDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGV
VTTIRKTRGDDIDAACGQLAGAVKDRTRLAERTGASKIIEVRAV"
misc_feature 55498..56613
/locus_tag="BMA10229_A0060"
/note="ribosomal RNA large subunit methyltransferase N;
Provisional; Region: PRK11194"
/db_xref="CDD:183031"
misc_feature 55819..56427
/locus_tag="BMA10229_A0060"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(55822..55824,55828..55830,55834..55836,55840..55848,
55999..56001,56005..56010,56101..56109,56167..56169,
56302..56304,56392..56397)
/locus_tag="BMA10229_A0060"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 56683..57846
/locus_tag="BMA10229_A0061"
/db_xref="GeneID:4793900"
CDS 56683..57846
/locus_tag="BMA10229_A0061"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026070.1"
/db_xref="GI:124386325"
/db_xref="GeneID:4793900"
/translation="MCDNGGAVSPAGAGAGVQARRIDARMRMSEPQPSKSPETNAGEK
PATAGGGMASVAAVGARLAELRRTKGWSVDDVSARLKVAAPKLQALEAGDTSQLPGTT
FALGLVRSYAKMLGVDPEPFAQALRREKGVPEVDLSMPASAGTDLPRGRVSIPLGGAS
RGRPWLWAVAAVVVALVAAAMWRTGGDSSNWLARFKSSGAGEAASAAHAQQEGAASDL
PASAAVSGTVMQAGALAASATQSVGGASAGDTAAASVPAAGAAPVVASAAAALSASAP
VAAAQPAQGAQQPAASAADGASAAVTAAPGQSVVALKVAQDCWFSVRDKNGKELFSAL
VRAGETRQVAGDAPLKVTIGNKAGLESVAFDGKPVDPAKYSTARGNVARFALP"
misc_feature 56863..57042
/locus_tag="BMA10229_A0061"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(56869..56871,56881..56883,56956..56958)
/locus_tag="BMA10229_A0061"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(56878..56880,56953..56955)
/locus_tag="BMA10229_A0061"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(56899..56904,56935..56937,56944..56946,56956..56961)
/locus_tag="BMA10229_A0061"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
misc_feature 57610..57843
/locus_tag="BMA10229_A0061"
/note="Domain of unknown function (DUF4115); Region:
DUF4115; pfam13464"
/db_xref="CDD:205642"
gene 57990..59240
/gene="ispG"
/locus_tag="BMA10229_A0062"
/gene_synonym="gcpE"
/db_xref="GeneID:4791635"
CDS 57990..59240
/gene="ispG"
/locus_tag="BMA10229_A0062"
/gene_synonym="gcpE"
/EC_number="1.17.7.1"
/note="catalyzes the conversion of 2C-methyl-D-erythritol
2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl
diphosphate; involved in isoprenoid synthesis"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase"
/protein_id="YP_001026071.1"
/db_xref="GI:124385778"
/db_xref="GeneID:4791635"
/translation="MFGGHAPRRVSHAVDVRWGGTLVTIGGAAPVRVQSMTNTDTADA
IGTAIQVKELANAGSELVRITVNTPEAAAAVPAIREQLDRMGVTVPLVGDFHYNGHLL
LRDYPDCAQALSKYRINPGNVGQGAKRDSQFAQMIEAAIKYDKPVRIGVNWGSLDQDL
LARMMDENGARAEPWEAQSVMYEALIQSAIGSAERAVELGLGRDKIVLSCKVSGVQDL
VAVYRELSRRCGFALHLGLTEAGMGSKGIVASTAAIGLLLQEGIGDTIRISLTPEPGA
PRTGEVVVGQEILQTMGLRSFAPMVVACPGCGRTTSTLFQELALRIQTYLREQMPVWR
SEYPGVEKMNVAVMGCIVNGPGESKHANIGISLPGSGENPAAPVFVDGEKVKTLRGEH
IAEEFQQIVSDYVARTYGRAAAQN"
misc_feature 58002..>58859
/gene="ispG"
/locus_tag="BMA10229_A0062"
/gene_synonym="gcpE"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
misc_feature 58005..59210
/gene="ispG"
/locus_tag="BMA10229_A0062"
/gene_synonym="gcpE"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Reviewed; Region: ispG; PRK00366"
/db_xref="CDD:178989"
misc_feature <58728..59081
/gene="ispG"
/locus_tag="BMA10229_A0062"
/gene_synonym="gcpE"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
gene 59259..60599
/gene="hisS"
/locus_tag="BMA10229_A0063"
/db_xref="GeneID:4792353"
CDS 59259..60599
/gene="hisS"
/locus_tag="BMA10229_A0063"
/EC_number="6.1.1.21"
/note="catalyzes a two-step reaction, first charging a
histidine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA
synthetase; forms homodimers; some organisms have a
paralogous gene, hisZ, that is similar to hisS and
produces a protein that performs the first step in
histidine biosynthesis along with HisG"
/codon_start=1
/transl_table=11
/product="histidyl-tRNA synthetase"
/protein_id="YP_001026072.1"
/db_xref="GI:124385953"
/db_xref="GeneID:4792353"
/translation="MTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGY
QNIRTPIVEHTQLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEH
NMLYDGPKRLWYLGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIIMMCQRLWD
DLGLTGIKLEINSLGLAEERAAHRVELIKYLEQHVDKLDDDAQRRLYTNPLRVLDTKN
PALQEIVRNAPQLIDFLGDVSRAHFDGLQQLLKANNLPFTINPRLVRGLDYYNLTVFE
WVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMGVERILELLKEEHLVPEQEGV
DVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAV
IFGEDEVANGTVSVKPLRGTGAEGEKNVQQSVPVESLTEFLINAMVATAEDGDD"
misc_feature 59286..60557
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="histidyl-tRNA synthetase; Reviewed; Region: hisS;
PRK00037"
/db_xref="CDD:178812"
misc_feature 59328..60227
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent...; Region:
HisRS-like_core; cd00773"
/db_xref="CDD:73226"
misc_feature order(59343..59345,59379..59381,59394..59414,59484..59489,
59526..59528,59532..59534,59547..59552,59559..59564,
59646..59651,59670..59672,59694..59696,59706..59708,
59715..59717,60132..60134,60186..60191)
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73226"
misc_feature 59388..59414
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="motif 1; other site"
/db_xref="CDD:73226"
misc_feature order(59526..59528,59532..59534,59616..59618,59622..59624,
59643..59645,59652..59654,59658..59660,59670..59672,
60051..60053,60057..60059,60063..60068,60117..60119,
60132..60134,60189..60191,60198..60200,60207..60209)
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="active site"
/db_xref="CDD:73226"
misc_feature 59613..59627
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="motif 2; other site"
/db_xref="CDD:73226"
misc_feature order(60186..60200,60207..60209)
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="motif 3; other site"
/db_xref="CDD:73226"
misc_feature 60255..60560
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="HisRS Histidyl-anticodon binding domain. HisRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
HisRS_anticodon; cd00859"
/db_xref="CDD:29799"
misc_feature order(60279..60284,60399..60401,60417..60419,60441..60443,
60471..60473,60477..60479)
/gene="hisS"
/locus_tag="BMA10229_A0063"
/note="anticodon binding site; other site"
/db_xref="CDD:29799"
gene 60652..61281
/locus_tag="BMA10229_A0064"
/db_xref="GeneID:4792168"
CDS 60652..61281
/locus_tag="BMA10229_A0064"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026073.1"
/db_xref="GI:124385333"
/db_xref="GeneID:4792168"
/translation="MSYHDEQESIESLKAWWARWGNLTTWVAIAVLAAAAAWNGWNYW
QRRQATQAAVLYEQAQQAVRSNDKAKISRVASDMEDKFGGTAYAQMTALEAAKALYGA
GDAAGAKAQLQWAADHAKDDEYKQIAKLRLASLLLDEKAYDAGLALLSGTPSDAFKGA
VADRRGDLLAAQGKSDDAKAAYKLALDALPKDDASARQLVQFKLDALGG"
misc_feature 60655..61278
/locus_tag="BMA10229_A0064"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2976"
/db_xref="CDD:225523"
misc_feature 60673..60801
/locus_tag="BMA10229_A0064"
/note="Uncharacterized protein conserved in bacteria
(DUF2133); Region: DUF2133; pfam09976"
/db_xref="CDD:204361"
gene 61326..62471
/locus_tag="BMA10229_A0065"
/db_xref="GeneID:4792651"
CDS 61326..62471
/locus_tag="BMA10229_A0065"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026074.1"
/db_xref="GI:124384205"
/db_xref="GeneID:4792651"
/translation="MNLLKRYAAPVACAAAVLVFAACSSTKDARRVPTPLTEFKPVLD
VQQVWTASVGKGGRYSFSPVAVGDAVYVAGANGSVEKIDAKTGQQVWRTKIGSDLSAG
VGSDGNLTAVGALKGGVFVLGPDGKQLWKATVQGEIFSPPLVGNGLVIVRTIDGQVIA
FAAQTGEQKWTYRNRAVPLNLRVSAGMTFAGDAAVLAGFPGGGLVALNLQTGEPFWQT
PVSFPKGVTEVERINDVTGAPTLVGAETCAVTFQGQLGCFDANSGRPLWEKPFSSRSG
VAQDDTVVVGGDDWSVVSAYDVATGKALWRNDKLKSRDVGVPYLLGRAVVLGDYKGFV
HFLSRDDGTFVARMKTDGSAIAAAPVLAGNTLVVLTQDGGVYGFRPR"
misc_feature 61392..62462
/locus_tag="BMA10229_A0065"
/note="outer membrane assembly lipoprotein YfgL; Region:
assembly_YfgL; TIGR03300"
/db_xref="CDD:213792"
misc_feature 61419..62462
/locus_tag="BMA10229_A0065"
/note="PQQ-dependent dehydrogenases and related proteins;
Region: PQQ_DH_like; cl11493"
/db_xref="CDD:209343"
misc_feature order(61455..61463,61470..61472,61566..61568,61572..61574,
61581..61589,61596..61598,61686..61688,61692..61694,
61698..61706,61713..61715,61803..61805,61809..61811,
61818..61826,61833..61835,61941..61943,61947..61949,
61956..61964,61971..61973,62094..62096,62100..62102,
62109..62117,62124..62126,62208..62210,62214..62216,
62223..62231,62238..62240,62331..62333,62337..62339,
62346..62354,62361..62363,62454..62456,62460..62462)
/locus_tag="BMA10229_A0065"
/note="Trp docking motif [polypeptide binding]; other
site"
/db_xref="CDD:199833"
misc_feature order(61503..61505,61626..61628,61740..61742,61785..61790,
61881..61883,62076..62078,62268..62270)
/locus_tag="BMA10229_A0065"
/note="active site"
/db_xref="CDD:199833"
gene 62746..64083
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/db_xref="GeneID:4790745"
CDS 62746..64083
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="EngA; essential Neisserial GTPase; synchronizes
cellular events by interacting with multiple targets with
tandem G-domains; overexpression in Escherichia coli
suppresses rrmJ mutation; structural analysis of the
Thermotoga maritima ortholog shows different nucleotide
binding affinities in the two binding domains"
/codon_start=1
/transl_table=11
/product="GTP-binding protein EngA"
/protein_id="YP_001026075.1"
/db_xref="GI:124383522"
/db_xref="GeneID:4790745"
/translation="MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGE
GRVGARPYLVVDTGGFEPVAKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKS
IADYLRKTGRPIFLVVNKAEGMKYTAVASDFYELGLGDPRAISAAHGDGVNDMINEAL
EVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSI
YVDFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDIS
DQDAHIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAE
KTGIGALMRSVDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVRPKLRYAHQGGQ
NPPIIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADKD"
misc_feature 62749..64062
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="GTP-binding protein Der; Reviewed; Region:
PRK00093"
/db_xref="CDD:178858"
misc_feature 62761..63228
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="EngA1 GTPase contains the first domain of EngA;
Region: EngA1; cd01894"
/db_xref="CDD:206681"
misc_feature 62770..62793
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G1 box; other site"
/db_xref="CDD:206681"
misc_feature order(62779..62781,62785..62796,63100..63105,63109..63111,
63178..63186)
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206681"
misc_feature order(62824..62844,62854..62865)
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="Switch I region; other site"
/db_xref="CDD:206681"
misc_feature 62854..62856
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G2 box; other site"
/db_xref="CDD:206681"
misc_feature order(62908..62925,62989..62994)
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="Switch II region; other site"
/db_xref="CDD:206681"
misc_feature 62911..62922
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G3 box; other site"
/db_xref="CDD:206681"
misc_feature 63100..63111
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G4 box; other site"
/db_xref="CDD:206681"
misc_feature 63178..63186
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G5 box; other site"
/db_xref="CDD:206681"
misc_feature 63280..63792
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="EngA2 GTPase contains the second domain of EngA;
Region: EngA2; cd01895"
/db_xref="CDD:206682"
misc_feature 63301..63324
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G1 box; other site"
/db_xref="CDD:206682"
misc_feature order(63310..63312,63316..63327,63637..63642,63646..63648,
63736..63744)
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206682"
misc_feature order(63346..63348,63355..63396)
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="Switch I region; other site"
/db_xref="CDD:206682"
misc_feature 63385..63387
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G2 box; other site"
/db_xref="CDD:206682"
misc_feature 63442..63453
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G3 box; other site"
/db_xref="CDD:206682"
misc_feature order(63451..63456,63526..63531)
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="Switch II region; other site"
/db_xref="CDD:206682"
misc_feature 63637..63648
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G4 box; other site"
/db_xref="CDD:206682"
misc_feature 63736..63744
/gene="engA"
/locus_tag="BMA10229_A0066"
/gene_synonym="yfgK; yphC"
/note="G5 box; other site"
/db_xref="CDD:206682"
gene 64218..64457
/gene="hfq"
/locus_tag="BMA10229_A0067"
/db_xref="GeneID:4793882"
CDS 64218..64457
/gene="hfq"
/locus_tag="BMA10229_A0067"
/note="Stimulates the elongation of poly(A) tails"
/codon_start=1
/transl_table=11
/product="RNA-binding protein Hfq"
/protein_id="YP_001026076.1"
/db_xref="GI:124383448"
/db_xref="GeneID:4793882"
/translation="MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYV
VLLRNTVTQMVYKHAISTVVPARPVNFHPDAEAAS"
misc_feature 64236..64412
/gene="hfq"
/locus_tag="BMA10229_A0067"
/note="bacterial Hfq-like; Region: Hfq; cd01716"
/db_xref="CDD:212463"
misc_feature order(64236..64244,64251..64253,64296..64310,64332..64340,
64344..64349,64368..64412)
/gene="hfq"
/locus_tag="BMA10229_A0067"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:212463"
misc_feature order(64284..64304,64308..64361)
/gene="hfq"
/locus_tag="BMA10229_A0067"
/note="Sm1 motif; other site"
/db_xref="CDD:212463"
misc_feature order(64293..64295,64305..64319,64356..64358,64374..64376,
64398..64403,64407..64409)
/gene="hfq"
/locus_tag="BMA10229_A0067"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:212463"
misc_feature 64371..64406
/gene="hfq"
/locus_tag="BMA10229_A0067"
/note="Sm2 motif; other site"
/db_xref="CDD:212463"
gene 64529..65692
/gene="hflX"
/locus_tag="BMA10229_A0068"
/db_xref="GeneID:4793808"
CDS 64529..65692
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="identified by match to protein family HMM PF01926;
match to protein family HMM TIGR00231; match to protein
family HMM TIGR03156"
/codon_start=1
/transl_table=11
/product="GTP-binding protein HflX"
/protein_id="YP_001026077.1"
/db_xref="GI:124386447"
/db_xref="GeneID:4793808"
/translation="MINAALVGIDFGKTDFEASLEELSLLASSAGAHPAVTLTGRRSS
PDAALFVGSGKADELRLACEANDVEIVIFNHALAPAQQRNLERVLNRRVIDRTSLILD
IFAQRARSHEGKLQVELAQLQYLATRLIRAWTHLERQKGGIGLRGPGETQLETDRRLI
GERIKMLKSRLDKLRRQHHTQRRQRARSGTLSVSLVGYTNAGKSTLFNALTKAQAYAA
DQLFATLDTTSRRVYLGDEVGQIVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLH
VVDASSAVRLEQIEQVNDVLREIGADSIRQILVFNKIDAVPELAARGGAVERDEYGNI
SRVFLSARTGQGLDSLRAAIAEIATAEHLVGAAPLDGAPALPHEDHPVSEHGR"
misc_feature 64538..65596
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="GTP-binding protein HflX; Region: GTP_HflX;
TIGR03156"
/db_xref="CDD:163162"
misc_feature <64640..64843
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="GTP-binding GTPase N-terminal; Region: GTP-bdg_N;
pfam13167"
/db_xref="CDD:205348"
misc_feature 64976..65599
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="HflX GTPase family; Region: HflX; cd01878"
/db_xref="CDD:206666"
misc_feature 65117..65140
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="G1 box; other site"
/db_xref="CDD:206666"
misc_feature order(65126..65128,65132..65143,65459..65464,65468..65470,
65546..65554)
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206666"
misc_feature 65180..65221
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="Switch I region; other site"
/db_xref="CDD:206666"
misc_feature 65210..65212
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="G2 box; other site"
/db_xref="CDD:206666"
misc_feature 65261..65272
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="G3 box; other site"
/db_xref="CDD:206666"
misc_feature 65270..65341
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="Switch II region; other site"
/db_xref="CDD:206666"
misc_feature 65459..65470
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="G4 box; other site"
/db_xref="CDD:206666"
misc_feature 65546..65554
/gene="hflX"
/locus_tag="BMA10229_A0068"
/note="G5 box; other site"
/db_xref="CDD:206666"
gene 65738..67087
/gene="hflK"
/locus_tag="BMA10229_A0069"
/db_xref="GeneID:4791576"
CDS 65738..67087
/gene="hflK"
/locus_tag="BMA10229_A0069"
/note="identified by match to protein family HMM PF01145;
match to protein family HMM TIGR01933"
/codon_start=1
/transl_table=11
/product="ftsH protease activity modulator HflK"
/protein_id="YP_001026078.1"
/db_xref="GI:124384316"
/db_xref="GeneID:4791576"
/translation="MNDYNERSTWRRMRALLSINDPRWGRGGNGDKPRANESKRPNGR
DDGPPDLDEMWRNFNRRLSGWFGGKGGGNNGFRPDNGRDARVGVGIVAGVLIAIYLGS
GIFIVQDGQTGVVLRLGQYKGSVGDGVHWRLPYPFESHEIVDTAQVRSIEIGRNNVVR
LANVKDASMLTRDADIVDVRFAVQYRVGSPTDYLFHAVDPERSVSQAAQAAVREIVGA
RRADEVLAQDRDALRDALSKAIQRDLDRYRTGLVVTGVTVQSVSPPEQVQAAVDDIAK
ARQDSEAAKNAAQAYASELLPRAQGDAAKMVDDAKSYAERVVAQAEGDAERFKQVYAQ
YSKAPAVIRERMYLETMQEIYSNTTKVYVGNKAGNSVLYLPLDKIVEAGRQRAAEAAS
AGVAPPASGAQAPAPASAAAAASAPRVAAPAAASPASGSDSRSREALRSRSRTDDLQ"
misc_feature 65789..65926
/gene="hflK"
/locus_tag="BMA10229_A0069"
/note="Bacterial membrane protein N terminal; Region:
HflK_N; pfam12221"
/db_xref="CDD:204850"
misc_feature 66032..66802
/gene="hflK"
/locus_tag="BMA10229_A0069"
/note="Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflK; cd03404"
/db_xref="CDD:48216"
misc_feature 66047..66868
/gene="hflK"
/locus_tag="BMA10229_A0069"
/note="HflK protein; Region: hflK; TIGR01933"
/db_xref="CDD:130988"
gene 67104..68003
/gene="hflC"
/locus_tag="BMA10229_A0070"
/db_xref="GeneID:4793723"
CDS 67104..68003
/gene="hflC"
/locus_tag="BMA10229_A0070"
/note="identified by match to protein family HMM PF01145;
match to protein family HMM TIGR01932"
/codon_start=1
/transl_table=11
/product="ftsH protease activity modulator HflC"
/protein_id="YP_001026079.1"
/db_xref="GI:124383417"
/db_xref="GeneID:4793723"
/translation="MNRIIALVVAIVIVALVASSTVLVVDPRHTAVLSSRDGGTPALA
GPGLHFKLPQPLQTATLVDVRVQTLDSADPLSLATKDKSDVLVSPVVKYRIADALKYY
KETGGAPRGEADRLTAAAKGALGAAFAKRDLDDALGSQRAIADDAKRALQADAAPLGI
DIVDVQLTRVDLPAAQADGAYQRMTAELQREADRERAEGAAQAEEIKAEAARQQQTIL
AEGYKSAQSIKGEGDAKAASIAADAFGRDPQFYQFYASLQAYRNSFKPNDVIVVDPDS
EFFRFMRSPTGGAAAPAAAPRNR"
misc_feature 67179..67895
/gene="hflC"
/locus_tag="BMA10229_A0070"
/note="Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflC; cd03405"
/db_xref="CDD:239499"
gene 68028..68219
/locus_tag="BMA10229_A0071"
/db_xref="GeneID:4791340"
CDS 68028..68219
/locus_tag="BMA10229_A0071"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026080.1"
/db_xref="GI:124385774"
/db_xref="GeneID:4791340"
/translation="MDLAGSLLLALALMLIIEGAFPFVFPSAWRDTFRRIAERPPHHI
RIGGFIVMALGLVLLLLVT"
misc_feature 68073..68186
/locus_tag="BMA10229_A0071"
/note="Uncharacterized protein conserved in bacteria
(DUF2065); Region: DUF2065; pfam09838"
/db_xref="CDD:204329"
gene 68331..69479
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/db_xref="GeneID:4792349"
CDS 68331..69479
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/note="May allow the feedback regulation of ATP
phosphoribosyltransferase activity by histidine"
/codon_start=1
/transl_table=11
/product="ATP phosphoribosyltransferase"
/protein_id="YP_001026081.1"
/db_xref="GI:124384850"
/db_xref="GeneID:4792349"
/translation="MSTWLLPENIADVLPSEARKIEELRRRLLDRFRSYGYEMVMPPL
LEYLESLLTSGGNELRLRTFKLVDQVSGRTLGLRADMTPQVARIDAHLLNRQGVTRLC
YAGPVLHTRPRGLHASREQLQIGAEIYGHAGLEADQEIQQLMLDALHLTGLKKIRLDL
CHAGVLAALFARDAAAAERGEALYEALAGKDVPRLNELTDDLGADTRAALRALPRLYG
DASVLDDARRLLPALPEIARALDDLAHLAAQVKDAEVAIDLADLRGYAYHSGAMFAAY
VDGVPNAVAHGGRYDHVGQAYGRARPATGFSLDLREIARISPVEARGAAILAPWKQDD
ALRAAVGALRDAGEVVIQALPGHDHVLDEFACDRALVERDGAWVIEPR"
misc_feature 68337..69473
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/note="ATP phosphoribosyltransferase regulatory subunit;
Provisional; Region: PRK12421"
/db_xref="CDD:183520"
misc_feature 68430..69272
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent...; Region:
HisRS-like_core; cd00773"
/db_xref="CDD:73226"
misc_feature order(68430..68432,68445..68465,68526..68531,68568..68570,
68574..68576,68589..68594,68601..68603,68685..68690,
68709..68711,68733..68735,68745..68747,68754..68756,
69192..69194,69243..69248)
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73226"
misc_feature 68439..68465
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/note="motif 1; other site"
/db_xref="CDD:73226"
misc_feature order(68568..68570,68574..68576,68655..68657,68661..68663,
68682..68684,68691..68693,68697..68699,68709..68711,
69117..69119,69123..69125,69129..69134,69177..69179,
69192..69194,69246..69248,69255..69257,69264..69266)
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/note="active site"
/db_xref="CDD:73226"
misc_feature 68652..68666
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/note="motif 2; other site"
/db_xref="CDD:73226"
misc_feature order(69243..69257,69264..69266)
/gene="hisZ"
/locus_tag="BMA10229_A0072"
/note="motif 3; other site"
/db_xref="CDD:73226"
gene 69604..70950
/gene="purA"
/locus_tag="BMA10229_A0073"
/db_xref="GeneID:4793253"
CDS 69604..70950
/gene="purA"
/locus_tag="BMA10229_A0073"
/EC_number="6.3.4.4"
/note="catalyzes the formation of
N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine
monophosphate and GTP in AMP biosynthesis"
/codon_start=1
/transl_table=11
/product="adenylosuccinate synthetase"
/protein_id="YP_001026082.1"
/db_xref="GI:124384688"
/db_xref="GeneID:4793253"
/translation="MSASAVNVTPGRNVVVVGTQWGDEGKGKIVDWLTDHAQGVVRFQ
GGHNAGHTLIIGGKKTILRLIPSGIMREGVACYIGNGVVLSPEALFKEIGELEEAGLS
VRERLFISEATTLILPYHIAIDQAREARRGAGKIGTTGRGIGPAYEDKVGRRALRVQD
LFDARTFADRLRENLDFHNFVLTQYLGGAAVDFQATLDTMLGYADRLKPMVTDVSRRL
YEENHAGRNLLFEGAQGTLLDIDHGTYPFVTSSNCVAGAAAAGAGVGPQKLDYILGIT
KAYCTRVGSGPFPSELYDADNPSRQDQIGITLANVGKEFGSVTGRPRRTGWLDAAALR
RSIQINGVSGLCMTKLDVLDGLDEVKLCVGYKIDGEDVDLLPRGAAEVARCEPVYETF
GGWKESTVGIDSWDALPANARAYLTRVQEVAGVPIDMVSTGPDRDETILLRHPFKV"
misc_feature 69661..70926
/gene="purA"
/locus_tag="BMA10229_A0073"
/note="Adenylosuccinate synthetase; Region:
Adenylsucc_synt; smart00788"
/db_xref="CDD:197875"
misc_feature 69661..70905
/gene="purA"
/locus_tag="BMA10229_A0073"
/note="Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the...; Region: AdSS;
cd03108"
/db_xref="CDD:73337"
misc_feature order(69670..69672,69676..69684,69751..69759,69763..69765,
70648..70650,70654..70656,70900..70905)
/gene="purA"
/locus_tag="BMA10229_A0073"
/note="GDP-binding site [chemical binding]; other site"
/db_xref="CDD:73337"
misc_feature order(69676..69678,69685..69687,69754..69756)
/gene="purA"
/locus_tag="BMA10229_A0073"
/note="ACT binding site; other site"
/db_xref="CDD:73337"
misc_feature order(69745..69747,70009..70011,70018..70020,70303..70305,
70348..70350)
/gene="purA"
/locus_tag="BMA10229_A0073"
/note="IMP binding site; other site"
/db_xref="CDD:73337"
gene 70951..71550
/locus_tag="BMA10229_A0074"
/db_xref="GeneID:4793452"
CDS 70951..71550
/locus_tag="BMA10229_A0074"
/note="identified by match to protein family HMM PF00156"
/codon_start=1
/transl_table=11
/product="phosphoribosyl transferase domain-containing
protein"
/protein_id="YP_001026083.1"
/db_xref="GI:124383667"
/db_xref="GeneID:4793452"
/translation="MQMTQNLTASITMSDPRNDDKNLWVGWDEYHRLIEMLALAVHDS
GWKFDKILCLARGGLRVGDQLSRIYDLPLAILATSSYREAAGTQQGDLDIAQYITMTR
GELTGNVLLVDDLVDSGVTLARVQQHLKERYPAVTAVRSAVLCYKGCSKVKPDYHVQY
LPTNPWIHQPFEEWDTVRPHNLAAWIKRGNAQRDDASAA"
misc_feature 71047..71424
/locus_tag="BMA10229_A0074"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(71113..71115,71119..71121,71287..71295,71299..71313)
/locus_tag="BMA10229_A0074"
/note="active site"
/db_xref="CDD:206754"
gene complement(71682..71858)
/locus_tag="BMA10229_A0075"
/db_xref="GeneID:4794028"
CDS complement(71682..71858)
/locus_tag="BMA10229_A0075"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026084.1"
/db_xref="GI:124386055"
/db_xref="GeneID:4794028"
/translation="MIRVGHKSGINPCWGRKNERYSNWARKNAAHWCCQHTTCCGAPS
VAWGRNAPCRDGAS"
gene 71841..73733
/gene="kup"
/locus_tag="BMA10229_A0076"
/db_xref="GeneID:4791907"
CDS 71841..73733
/gene="kup"
/locus_tag="BMA10229_A0076"
/note="identified by match to protein family HMM PF02705"
/codon_start=1
/transl_table=11
/product="potassium uptake protein"
/protein_id="YP_001026085.1"
/db_xref="GI:124385081"
/db_xref="GeneID:4791907"
/translation="MTDTNHSSMRQHSLQSLAIAAIGVVFGDIGTSPLYSLKEAFSPA
HGIPLTPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLNPK
SRITGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLSHLVLPITIVILIA
LFWIQRHGTATVGKLFGPIMLLWFVTIAALGIYHIARAPMIVSAINPYYAFSFMSEHV
LLAYVVLGSVVLVLTGAEALYADMGHFGAKPIRLAAYVLVMPSLVLNYFGQGALLLLD
PKAIENPFFLLAPQWAALPLVVLSTVATVIASQAVISGAYSLTSQAIQLGYVPRMKIL
HTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVV
MVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKG
RHIVKERTAADGIPLAPFLQGLLAHPPHRVSGTAIYLTGNDTLVPVSLLHNLKHNKVL
HERTIFMTFVTRDIPYVKDHERVTVHDAGEGLYIVKAEYGFNETPDVKAVLEEVARQR
GMTFELMDTSFFLARETVVPTHLPGMSIWRERVFAWMHQNAAKPTDFFAIPANRVVEL
GTKIEI"
misc_feature 71856..73730
/gene="kup"
/locus_tag="BMA10229_A0076"
/note="K+ transporter [Inorganic ion transport and
metabolism]; Region: Kup; COG3158"
/db_xref="CDD:32972"
gene complement(73968..76292)
/locus_tag="BMA10229_A0077"
/db_xref="GeneID:4792942"
CDS complement(73968..76292)
/locus_tag="BMA10229_A0077"
/note="identified by match to protein family HMM PF00575"
/codon_start=1
/transl_table=11
/product="tex protein"
/protein_id="YP_001026086.1"
/db_xref="GI:124384978"
/db_xref="GeneID:4792942"
/translation="MTETVALKIVQRIADELSVQPRQVAAAVQLLDEGSTVPFIARYR
KEVTGNLDDTQLRQLEERLLYLRELEERRATIIASIDEQGKLTDELRAAIDAADSKQT
LEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQAEAAAYVNTDRGVADVKA
ALDGARDILSEQFGETAELLGKLRDYLFERGVVSSAVVDGKQGEEGEKFRDYYDYSET
IKTVPSHRALALFRGRNAGVLTVKLGLGEELDAQVPHPGEAMIARHFGIANQNRPADK
WLSDVCRWCWRVKVQPHIETELLTQLRETAEHEAIRVFARNLKDLLLAAPAGPKAVIG
LDPGLRTGVKVAVVDRTGKLLATDTIYPHEPRRDWDGSLAKLARLAAQTQAELVSIGN
GTASRETDKLASELIAKHPELKLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVS
IARRLQDPLAELVKIEPKAIGVGQYQHDVNQRELARSLDAVVEDCVNAVGVDANTASA
ALLARVSGLNSTLARNIVDYRDANGPFPSREHLRRVPRLGDKTFEQAAGFLRINGGEN
PLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPAEFVDERFGLPTVRDIL
SELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAFGAFVDIGVHQDGL
VHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDDDAAPSAPGNRGG
AERGAMRGGARAQRSREPEPAGAMAAAFAKLKQR"
misc_feature complement(74094..76280)
/locus_tag="BMA10229_A0077"
/note="Transcriptional accessory protein [Transcription];
Region: Tex; COG2183"
/db_xref="CDD:32366"
misc_feature complement(75678..76256)
/locus_tag="BMA10229_A0077"
/note="Tex-like protein N-terminal domain; Region: Tex_N;
pfam09371"
/db_xref="CDD:150144"
misc_feature complement(75006..75305)
/locus_tag="BMA10229_A0077"
/note="Likely ribonuclease with RNase H fold; Region:
YqgFc; smart00732"
/db_xref="CDD:128971"
misc_feature complement(74124..74327)
/locus_tag="BMA10229_A0077"
/note="S1_Tex: The C-terminal S1 domain of a transcription
accessory factor called Tex, which has been characterized
in Bordetella pertussis and Pseudomonas aeruginosa. The
tex gene is essential in Bortella pertusis and is named
for its role in toxin expression; Region: S1_Tex; cd05685"
/db_xref="CDD:88440"
misc_feature complement(order(74241..74243,74247..74249,74277..74279,
74301..74303))
/locus_tag="BMA10229_A0077"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88440"
gene 76299..76421
/locus_tag="BMA10229_A0078"
/db_xref="GeneID:4793019"
CDS 76299..76421
/locus_tag="BMA10229_A0078"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026087.1"
/db_xref="GI:124384250"
/db_xref="GeneID:4793019"
/translation="MCVYCLQKSPGPAGCAVGRTGRVNGAGHFAINAKGSSRGC"
gene 76432..77181
/locus_tag="BMA10229_A0079"
/db_xref="GeneID:4790790"
CDS 76432..77181
/locus_tag="BMA10229_A0079"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026088.1"
/db_xref="GI:124385155"
/db_xref="GeneID:4790790"
/translation="MIRSFPTTLPTSRFSVVAFAVALAATLSCAPVAGVAQTPAPAAT
SPAAAADAGAFAAPANFDARQKVLNQRTAENDYRYAVAQHNCYSTFFVNHCLDKARET
MRAERANISQEQLALDDEQRAVRAQERDRQLALKEAERQAQAPQRAADEQANAAAYEG
KQQENALKRAQRDAQAPQRAANQQAYDAKQAEFQRKLDAAHAQAAKDAQQRAENAARY
EQKQRDAAQHKADVDERQRQAAEKAKQKQQQ"
gene 77290..77505
/locus_tag="BMA10229_A0080"
/db_xref="GeneID:4792835"
CDS 77290..77505
/locus_tag="BMA10229_A0080"
/note="identified by match to protein family HMM PF04325"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026089.1"
/db_xref="GI:124385856"
/db_xref="GeneID:4792835"
/translation="MQTRSAETQQELYNRLVSLQELHQQLAREIEQKEGRSDIDDLTL
HRLKKEKLLAKDKIIMLQSQLEPDKRA"
misc_feature 77335..77475
/locus_tag="BMA10229_A0080"
/note="Protein of unknown function (DUF465); Region:
DUF465; pfam04325"
/db_xref="CDD:202972"
gene 77568..79826
/locus_tag="BMA10229_A0081"
/db_xref="GeneID:4792251"
CDS 77568..79826
/locus_tag="BMA10229_A0081"
/codon_start=1
/transl_table=11
/product="ATP-dependent helicase"
/protein_id="YP_001026090.1"
/db_xref="GI:124384589"
/db_xref="GeneID:4792251"
/translation="MNSPLDAHPDARRDDPSAARSPTSGAATGAYTPSVKRIVELDAI
FGEGGLFARALDNYRPRASQIDMARAVAAAMEASGKLMPEPEIFETRKRPARRMQDGA
AAGRDDACAAPPGDESADSGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHL
QDQLFQRDIPTVRDALAVPVTVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQDI
LRFAKITRSGDKAELASVPETSPVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQA
DIVVVNHHLFFADIMLRDTGMAELLPSANTIIFDEAHQLPETATLFFGETLSTTQLLE
LARDAVAEGLAHARDAVEWVKLGGALERAARDVRLAFADDGIVRMSLAQLGDGHPLFG
ALDALDAALDALSTALAGQAERAESIAACQRRARELQDLLAGWVAPGAQDGAADAADA
KPAAQTGEHGDPAEKVRWVEVFAHTVQLHETPLSVAPIFAKQRAGVPRAWIFTSATLS
VRGDFTHYAAQMGLSSRRSMTLPSPFDYQAQGLLYVPRNLPQPSSPAFTDAVFDAALP
AIEASGGGVFVLCTTLRAVDRIAMKLRDTIDARGWSTPLLVQGDASRTELLDRFRAYG
NAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQ
LPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRIWQSLPPFKRTREIDVVR
EFFAERREAEQA"
misc_feature 77916..79778
/locus_tag="BMA10229_A0081"
/note="Rad3-related DNA helicases [Transcription / DNA
replication, recombination, and repair]; Region: DinG;
COG1199"
/db_xref="CDD:31392"
misc_feature 77916..>78206
/locus_tag="BMA10229_A0081"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature 79269..79757
/locus_tag="BMA10229_A0081"
/note="Helicase C-terminal domain; Region: Helicase_C_2;
pfam13307"
/db_xref="CDD:205487"
misc_feature order(79305..79316,79389..79394,79458..79466)
/locus_tag="BMA10229_A0081"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
gene complement(80002..80826)
/gene="comL"
/locus_tag="BMA10229_A0082"
/db_xref="GeneID:4793533"
CDS complement(80002..80826)
/gene="comL"
/locus_tag="BMA10229_A0082"
/codon_start=1
/transl_table=11
/product="competence lipoprotein ComL"
/protein_id="YP_001026091.1"
/db_xref="GI:124384405"
/db_xref="GeneID:4793533"
/translation="MMHSTKRVAKPAAAWAALAAAAALVAGCHGLPQKSDETATWSNN
KLYSEAQDALTGGDWGKCAKYFEALQGRDPFGHFAQQAQINVAYCNWKDNETATADQA
VDRFIQLHPDHPDVAYAYYLKGMIHFNDDLGLFGRFSGQDMSERDPQALRESYDAFKA
VVDRYPKSKYAPDAAARMRYIVNALASHEVHAADYYYRRGAYVAAINRAQLAIKEYKN
APAIEDALHIMMLSYAKLNQPQLADDTKRVLASTFPDSPYVTGHARPGSKKSWWQF"
misc_feature complement(80062..80748)
/gene="comL"
/locus_tag="BMA10229_A0082"
/note="outer membrane assembly lipoprotein YfiO; Region:
OM_YfiO; TIGR03302"
/db_xref="CDD:188304"
gene 80898..82067
/locus_tag="BMA10229_A0083"
/db_xref="GeneID:4793671"
CDS 80898..82067
/locus_tag="BMA10229_A0083"
/EC_number="5.4.99.-"
/note="identified by match to protein family HMM PF00849;
match to protein family HMM PF01479; match to protein
family HMM TIGR00005"
/codon_start=1
/transl_table=11
/product="RluA family pseudouridine synthase"
/protein_id="YP_001026092.1"
/db_xref="GI:124385530"
/db_xref="GeneID:4793671"
/translation="MNARAGKSNRDDYSPSASPADASAGDSLDDDLTSDTLVAPARAD
TGADAPRTVDVPLALAGERLDKALAQLFPEFSRSRLQQWIESDRVRVSGAPAKIRQPV
PLGATIELLPELLPEQLAFTPEPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLL
NGLLHRYADAAGLPRAGIVHRLDKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFAL
AWGRMPDEGTIDAPIGRDPRERTRMAVVTGAAGKPARTHFRTVDTTLWARQPVSAIHC
DLETGRTHQIRVHCAHVGHPLLGDPVYGRARGKRSVAPLPGGFARQALHAWRLGLVHP
ASGRSMQWRAPLPADLAALVDALGFGADDAEFGDDDAVYDDGYDEGMPYADDDED"
misc_feature 81060..81923
/locus_tag="BMA10229_A0083"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature 81081..81317
/locus_tag="BMA10229_A0083"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(81084..81086,81120..81125,81129..81134,81138..81143,
81150..81155,81159..81161,81180..81191,81192..81200,
81204..81206)
/locus_tag="BMA10229_A0083"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 81306..81890
/locus_tag="BMA10229_A0083"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(81435..81446,81756..81758)
/locus_tag="BMA10229_A0083"
/note="active site"
/db_xref="CDD:211346"
gene 82074..82910
/locus_tag="BMA10229_A0084"
/db_xref="GeneID:4792464"
CDS 82074..82910
/locus_tag="BMA10229_A0084"
/note="identified by match to protein family HMM PF02578;
match to protein family HMM TIGR00726"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026093.1"
/db_xref="GI:124386252"
/db_xref="GeneID:4792464"
/translation="MTMLRPLTLADCVQPDWQAPPRVRALVSTRNGGVSEPPYGAWGG
DGGEVAGGMNLGRHTGDDPAHVEANRARLLALAGQSRAAWLEQVHGTEVVRAEDVLAA
GEGGAVRADASVAATPGAVCVVMVADCLPVLLCDDAGRAVGAAHAGWRGLVAGIVEKT
AERVAALAGGGADRLHAYLGPAIGPGAFEVGADVRSAFLDAAPLADYAATECAFAARA
HAPGKYLANLYALARLRLARVGVTRVSGGAACTATERERFYSYRRDRVTGRMAALIWL
AD"
misc_feature 82074..82901
/locus_tag="BMA10229_A0084"
/note="Multi-copper polyphenol oxidoreductase laccase;
Region: Cu-oxidase_4; cl00650"
/db_xref="CDD:207150"
misc_feature 82116..82907
/locus_tag="BMA10229_A0084"
/note="Multicopper polyphenol oxidase (laccase) [Secondary
metabolites biosynthesis, transport and catabolism];
Region: yfiH; COG1496"
/db_xref="CDD:31685"
gene 83427..85241
/gene="phaC"
/locus_tag="BMA10229_A0085"
/db_xref="GeneID:4791743"
CDS 83427..85241
/gene="phaC"
/locus_tag="BMA10229_A0085"
/note="identified by match to protein family HMM PF00561;
match to protein family HMM PF07167; match to protein
family HMM TIGR01838"
/codon_start=1
/transl_table=11
/product="poly(R)-hydroxyalkanoic acid synthase"
/protein_id="YP_001026094.1"
/db_xref="GI:124383320"
/db_xref="GeneID:4791743"
/translation="MQQLFESWLGAWRSFADPARAAAGDAPSPSPSPFAAFQPPQPFA
FAMPAMPPMPPMPDWSGAAASFAGLAPVASVPPARLQKLQADYSRDCLALIQQASAAT
PTVPELKDRRFSADAWKASPAHGFAAAWYLLNARYLQELADALETDPKTRERIRFTVQ
QWTAAASPSNFLALNPEAQKNLVETQGESLRLGMMNLLADMQRGKISQTDESQFVVGK
NLAVTPGAVVYENDLIQLIQYTPTTATVFERPLLIVPPCINKFYILDLQPENSLVAHA
LSCGHQVFLVSWRNADASVAHKTWDDYIDEGLLAAIDVVQQVSGREQINTLGFCVGGT
MLATALAVLAARGEHPAASMTLLTSMLDFSDTGILDVFVDEAHVQMREQTIGGKGGAP
AGLMRGVEFANTFSFLRPNDLVWNYVVDNYLKGRTPAPFDLLYWNGDSTSLPGPMYAW
YLRNTYLENKLREPDALTVCGEPVDLSRIDVPTFIYGSREDHIVPWQTAYASTSLLTG
PLKFVLGASGHIAGVINPPAKRKRSYWSYGASAKELPESANDWLDAAVEHPGSWWPVW
IEWLDQYGGKKVKPRAHLGCARFPVIEPAPGRYVLQRD"
misc_feature 83643..85232
/gene="phaC"
/locus_tag="BMA10229_A0085"
/note="poly(R)-hydroxyalkanoic acid synthase, class I;
Region: PHA_synth_I; TIGR01838"
/db_xref="CDD:213656"
misc_feature 83751..84254
/gene="phaC"
/locus_tag="BMA10229_A0085"
/note="Poly-beta-hydroxybutyrate polymerase (PhaC)
N-terminus; Region: PhaC_N; pfam07167"
/db_xref="CDD:203590"
gene 85338..86519
/gene="phbA"
/locus_tag="BMA10229_A0086"
/db_xref="GeneID:4790627"
CDS 85338..86519
/gene="phbA"
/locus_tag="BMA10229_A0086"
/EC_number="2.3.1.9"
/note="Catalyzes the synthesis of acetoacetyl coenzyme A
from two molecules of acetyl coenzyme A. It can also act
as a thiolase, catalyzing the reverse reaction and
generating two-carbon units from the four-carbon product
of fatty acid oxidation; in Rhizobia and Ralstonia is
involved in PHB biosynthesis"
/codon_start=1
/transl_table=11
/product="acetyl-CoA acetyltransferase"
/protein_id="YP_001026095.1"
/db_xref="GI:124384894"
/db_xref="GeneID:4790627"
/translation="MTDVVIVSAARTAVGKSGGSLAKIAAPELGASVIRAVLERAGVK
PEQVSEVILGQVLTAGSGQNPARQALIAAGLPNAVPGMTINKVCGSGLKAVMLAANAV
VAGDAEIVVAGGQENMSAAPHVLPGSRDGFRMGDAKLVDSMIVDGLWDVYNKYHMGIT
AENVAKEYGITREAQDQFAALSQNKAEAAQKAGRFDDEIVPIEIPQRKGEPLRFATDE
FVRHGVTAESLASLKPAFAKEGTVTAANASGINDGAAAVLVMSAKKAEALGLEPLARI
KAYANAGVDPSVMGMGPVPASRRCLERAGWSVGDLDLMEINEAFAAQALAVHKQMGWD
TSKVNVNGGAIAIGHPIGASGCRILVTLLHEMLKRDAKRGLASLCIGGGMGVALALER
P"
misc_feature 85338..86516
/gene="phbA"
/locus_tag="BMA10229_A0086"
/note="putative acyltransferase; Provisional; Region:
PRK05790"
/db_xref="CDD:180261"
misc_feature 85350..86513
/gene="phbA"
/locus_tag="BMA10229_A0086"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:29411"
misc_feature order(85404..85406,85485..85487,85527..85529,85536..85538,
85548..85550,85581..85592,85614..85616,85635..85640,
85647..85649,85692..85694,86172..86174,86178..86180,
86184..86186,86244..86246,86481..86486)
/gene="phbA"
/locus_tag="BMA10229_A0086"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29411"
misc_feature order(85599..85601,86382..86384,86472..86474)
/gene="phbA"
/locus_tag="BMA10229_A0086"
/note="active site"
/db_xref="CDD:29411"
gene 86645..87385
/gene="phbB-1"
/locus_tag="BMA10229_A0087"
/db_xref="GeneID:4793116"
CDS 86645..87385
/gene="phbB-1"
/locus_tag="BMA10229_A0087"
/EC_number="1.1.1.36"
/note="catalyzes the formation of 3-hydroxybutyryl-CoA
from acetoacetyl-CoA in polyhydroxyalkanoate synthesis"
/codon_start=1
/transl_table=11
/product="acetyacetyl-CoA reductase"
/protein_id="YP_001026096.1"
/db_xref="GI:124385773"
/db_xref="GeneID:4793116"
/translation="MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKW
LEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTR
EDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGI
HGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEIG
SIVAWLASEESGFSTGADFSLNGGLHMG"
misc_feature 86645..87382
/gene="phbB-1"
/locus_tag="BMA10229_A0087"
/note="acetyacetyl-CoA reductase; Provisional; Region:
PRK12938"
/db_xref="CDD:171822"
misc_feature 86654..87376
/gene="phbB-1"
/locus_tag="BMA10229_A0087"
/note="beta-Keto acyl carrier protein reductase (BKR),
involved in Type II FAS, classical (c) SDRs; Region:
BKR_SDR_c; cd05333"
/db_xref="CDD:187594"
misc_feature order(86672..86674,86678..86689,86744..86749,86822..86830,
86906..86917,86975..86977,87056..87064,87101..87103,
87113..87115,87191..87196,87200..87202,87206..87214)
/gene="phbB-1"
/locus_tag="BMA10229_A0087"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187594"
misc_feature order(86708..86710,86720..86722,86849..86851,86927..86938,
86942..86950,86957..86962,86969..86971,86981..86986,
86993..86998,87002..87007,87014..87019,87026..87028,
87074..87097,87104..87109,87116..87121,87128..87133,
87137..87154,87158..87163,87197..87199,87260..87268,
87272..87283,87290..87292,87299..87304,87308..87313,
87323..87325,87332..87370,87374..87376)
/gene="phbB-1"
/locus_tag="BMA10229_A0087"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature order(86930..86938,86942..86944,86948..86950,86957..86962,
86969..86971,86981..86986,86993..86998,87005..87007,
87014..87019,87026..87028,87071..87097,87104..87109,
87116..87121,87128..87133,87137..87145,87149..87154)
/gene="phbB-1"
/locus_tag="BMA10229_A0087"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature order(86978..86980,87062..87064,87101..87103,87113..87115)
/gene="phbB-1"
/locus_tag="BMA10229_A0087"
/note="active site"
/db_xref="CDD:187594"
gene 87522..88094
/gene="phaR"
/locus_tag="BMA10229_A0088"
/db_xref="GeneID:4792348"
CDS 87522..88094
/gene="phaR"
/locus_tag="BMA10229_A0088"
/note="identified by match to protein family HMM PF05233;
match to protein family HMM PF07879; match to protein
family HMM TIGR01848"
/codon_start=1
/transl_table=11
/product="polyhydroxyalkanoate synthesis repressor PhaR"
/protein_id="YP_001026097.1"
/db_xref="GI:124386439"
/db_xref="GeneID:4792348"
/translation="MTTTKKTGERLIKKYPNRRLYDTETSTYITLTDVKQLVLEQEDF
KVIDAKSSEDLTRSILLQIILEEESGGVPMFSSSMLSQIIRFYGHAMQGMMGTYLEKN
IQAFIDIQSKLADQSKNLYENNAMNPEVWSQFMNMQAPMMQGMMTSYIEQSKNMFVQM
QEQMQNQAKTMFSSFPFKPATPPGSEPEKK"
misc_feature 87522..88052
/gene="phaR"
/locus_tag="BMA10229_A0088"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5394"
/db_xref="CDD:227682"
misc_feature 87549..87740
/gene="phaR"
/locus_tag="BMA10229_A0088"
/note="PHB/PHA accumulation regulator DNA-binding domain;
Region: PHB_acc_N; pfam07879"
/db_xref="CDD:149123"
misc_feature 87744..87866
/gene="phaR"
/locus_tag="BMA10229_A0088"
/note="PHB accumulation regulatory domain; Region:
PHB_acc; pfam05233"
/db_xref="CDD:203218"
gene 88665..90056
/gene="rimO"
/locus_tag="BMA10229_A0089"
/db_xref="GeneID:4791568"
CDS 88665..90056
/gene="rimO"
/locus_tag="BMA10229_A0089"
/note="catalyzes the methylthiolation of an aspartic acid
residue of the S12 protein of the 30S ribosomal subunit"
/codon_start=1
/transl_table=11
/product="ribosomal protein S12 methylthiotransferase"
/protein_id="YP_001026098.1"
/db_xref="GI:124384882"
/db_xref="GeneID:4791568"
/translation="MENSLKSSGKPLAAPKVGMVSLGCPKALVDSEQIITQLRAEGYE
ISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALAENGKVIVTGCLGAKKSASGSGLI
AEVHPKVLAVTGPHAVGEVMQAVHSHLPKPHDPFVDLVPAAGIKLTPRHYAYLKISEG
CNHRCSFCIIPSMRGELVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRT
GFWNGRPLKTRMTELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVL
PYLDVPFQHAHPEVLKRMKRLANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQ
FETLLDFIREAELDRVGCFAYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAA
RIARKIGKTLKVLIDEVNAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVK
ITGADGHDLWGEV"
misc_feature 88692..90053
/gene="rimO"
/locus_tag="BMA10229_A0089"
/note="ribosomal protein S12 methylthiotransferase;
Provisional; Region: rimO; PRK14862"
/db_xref="CDD:184864"
misc_feature 88710..89015
/gene="rimO"
/locus_tag="BMA10229_A0089"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature 89850..90053
/gene="rimO"
/locus_tag="BMA10229_A0089"
/note="TRAM domain; Region: TRAM; cl01282"
/db_xref="CDD:120537"
gene 90059..90985
/locus_tag="BMA10229_A0090"
/db_xref="GeneID:4793104"
CDS 90059..90985
/locus_tag="BMA10229_A0090"
/note="identified by match to protein family HMM PF00294"
/codon_start=1
/transl_table=11
/product="carbohydrate kinase"
/protein_id="YP_001026099.1"
/db_xref="GI:124385617"
/db_xref="GeneID:4793104"
/translation="MPATFPDVLALGEAMVEFNQARLGEPNYLQGFGGDTSNFCIAAA
RQGARAGFVSAVGGDHFGRLLLDLWRGERVDTSYVRVDDGAPTGVYFVSHGEHGHAFD
YLRAGSAASCYAIRDLPLDALAAARFVHLSGVSLAISTSACDAAFAAIAHARANGARV
SFDTNLRLKLWPLPRARAVMTEALRHTDVCLPSWDDVTALTGLDERDAIVDALLALGP
RVVALKLGREGAYVATPGERRVVPGFVVDALDATGAGDCFGGAFVARLAAGDDPFSAA
RYANAAAALSTQGFGAVAPIPSRDAVERLLGA"
misc_feature 90077..90982
/locus_tag="BMA10229_A0090"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature 90077..90937
/locus_tag="BMA10229_A0090"
/note="2-keto-3-deoxygluconate kinase (KdgK)
phosphorylates 2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the...;
Region: KdgK; cd01166"
/db_xref="CDD:29350"
misc_feature order(90158..90163,90170..90172,90326..90328,90365..90367,
90371..90373,90458..90460,90557..90559,90815..90817,
90824..90826,90932..90934)
/locus_tag="BMA10229_A0090"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29350"
misc_feature order(90728..90730,90743..90745,90788..90790,90815..90823,
90830..90832,90896..90898,90908..90910)
/locus_tag="BMA10229_A0090"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29350"
gene 91081..92265
/locus_tag="BMA10229_A0091"
/db_xref="GeneID:4792371"
CDS 91081..92265
/locus_tag="BMA10229_A0091"
/note="catalyzes the formation of beta-ketovaleryl-CoA
from acetyl-CoA and propionyl-CoA"
/codon_start=1
/transl_table=11
/product="beta-ketothiolase"
/protein_id="YP_001026100.1"
/db_xref="GI:124385106"
/db_xref="GeneID:4792371"
/translation="MQREVVVVSGVRTAIGDFGGSLKDFAPTELGARVVREVLSRAQV
SGDEVGHVVFGNVVHTEPKDMYLARVAAINGGVAQHAPALTVNRLCGSGLQAIVSAAQ
NVLLGDADIAVAGGAENMSRAPYSVPAARFGQRMGDAKLVDMMIGALNDPFQSIHMGV
TAENVAAKYGITRDAQDALALESHRRASHATKSGYFKDQILPIEIASRKGTVVFDADE
HVRHDASLDDFTKLKPVFAKENGTVTAGNASGINDAAAAVVLMERGVADKRGAKPLAR
LVSYAHAGVDPAYMGIGPVPATKKALERAGITVADLDVIEANEAFAAQACAVSNALGL
DPAKVNPNGSGISLGHPIGATGALITVKALYELQRIGGRYALVTMCIGGGQGIAAVFE
RL"
misc_feature 91081..92262
/locus_tag="BMA10229_A0091"
/note="beta-ketothiolase; Provisional; Region: PRK09051"
/db_xref="CDD:181625"
misc_feature 91096..92259
/locus_tag="BMA10229_A0091"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:29411"
misc_feature order(91150..91152,91231..91233,91276..91278,91285..91287,
91297..91299,91330..91341,91363..91365,91384..91389,
91396..91398,91441..91443,91918..91920,91924..91926,
91930..91932,91990..91992,92227..92232)
/locus_tag="BMA10229_A0091"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29411"
misc_feature order(91348..91350,92128..92130,92218..92220)
/locus_tag="BMA10229_A0091"
/note="active site"
/db_xref="CDD:29411"
gene 92282..92863
/locus_tag="BMA10229_A0092"
/db_xref="GeneID:4792968"
CDS 92282..92863
/locus_tag="BMA10229_A0092"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026101.1"
/db_xref="GI:124384061"
/db_xref="GeneID:4792968"
/translation="MKLITAIRGAALAAALATAAGLAFAQSSAARAAAAPGAADAAPA
AATAQADAPPPAVPLKPNPAYARLPRYEGTVGGRPVVVRLGPKTDEPGVHGECQYLDT
GAVILLAGDRDGDTLEIEESDDGTNITGVWIGRFDPSGGLSADRMNADQSDPLPVALH
PAGAQSASAAVGAPQAGAPGQSVGGVSNLRTGE"
gene 93164..94348
/gene="metC"
/locus_tag="BMA10229_A0093"
/db_xref="GeneID:4790962"
CDS 93164..94348
/gene="metC"
/locus_tag="BMA10229_A0093"
/EC_number="4.4.1.8"
/note="catalyzes the formation of L-homocysteine from
cystathionine"
/codon_start=1
/transl_table=11
/product="cystathionine beta-lyase"
/protein_id="YP_001026102.1"
/db_xref="GI:124383625"
/db_xref="GeneID:4790962"
/translation="MTASIPKRALQTRVVQPDDRIPAGFESFVVPVARASTVVFPDLA
TMRNLDWRQDGQWRYGLHATPTSLALAQRLAEIEGGAHALLQPSGLCAITNVYFGLVK
EGDDVLIPDNAYGPNGDFGKWLAKDFGITARFYDPMIGAGIADLIQPNTRIVWLEAPG
SVTMEVPDVRAITAVARARGIVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSD
VLMGATITADGELHAKLKLARMRLGIGVSADDCSLVLRGLPSMQARFDAHSRSALSLA
RWLKTRAEIATVLHPQLPDCPGHDTFMRDFTGAGGLFSVVFDERYDAAQVDRFVEALE
LFAIGWSWGGACSLAMPYDVQSMRTGKWPHRGTLVRFYVGLEDEADLRADIERALTSA
LA"
misc_feature 93164..94345
/gene="metC"
/locus_tag="BMA10229_A0093"
/note="cystathionine beta-lyase; Provisional; Region:
PRK07050"
/db_xref="CDD:180810"
misc_feature 93248..94330
/gene="metC"
/locus_tag="BMA10229_A0093"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:241782"
misc_feature order(93428..93433,93440..93442,93632..93634,93719..93721,
93728..93730,93785..93787,93794..93796)
/gene="metC"
/locus_tag="BMA10229_A0093"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 93794..93796
/gene="metC"
/locus_tag="BMA10229_A0093"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(94612..95457)
/gene="serB"
/locus_tag="BMA10229_A0094"
/db_xref="GeneID:4793985"
CDS complement(94612..95457)
/gene="serB"
/locus_tag="BMA10229_A0094"
/EC_number="3.1.3.3"
/note="identified by match to protein family HMM PF00702;
match to protein family HMM TIGR00338; match to protein
family HMM TIGR01488"
/codon_start=1
/transl_table=11
/product="phosphoserine phosphatase"
/protein_id="YP_001026103.1"
/db_xref="GI:124384487"
/db_xref="GeneID:4793985"
/translation="MTTNLVVQSTAPLSDAHHKPLAALAHGARVVALDAQSIRIERAN
PAQRADIDAYCGTHALDYAFVDAARKLADFGLVAMDMDSTLITIECIDEIADFCGLKA
EVSAITEAAMRGEIKDFNESLTRRVALLAGLEASALERVYEERLRLSPGAESMLAGVK
AAGLKTLLVSGGFTFFTERLKARLGLDFAHSNTLEIVDGKLTGKVVGEIVNADVKARA
VRETCAALGIEPARAIVIGDGSNDLKMMAAGGFSIAFRAKPIVRSAASAAFDHVGLDG
LLRLF"
misc_feature complement(95302..95445)
/gene="serB"
/locus_tag="BMA10229_A0094"
/note="Domain of unknown function (DUF4072); Region:
DUF4072; pfam13284"
/db_xref="CDD:205464"
misc_feature complement(94618..95235)
/gene="serB"
/locus_tag="BMA10229_A0094"
/note="Phosphoserine phosphatase [Amino acid transport and
metabolism]; Region: SerB; COG0560"
/db_xref="CDD:223634"
misc_feature complement(94693..95037)
/gene="serB"
/locus_tag="BMA10229_A0094"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(94948..94950)
/gene="serB"
/locus_tag="BMA10229_A0094"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 95500..96237
/locus_tag="BMA10229_A0095"
/db_xref="GeneID:4793613"
CDS 95500..96237
/locus_tag="BMA10229_A0095"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026104.1"
/db_xref="GI:124385381"
/db_xref="GeneID:4793613"
/translation="MRRTRYCSRLRPDASGWAPGGRHRGCPFERWRARRRARAPCVSD
GDFRFSSVGFAFSRCSLCGARRSMPCFRNSVLGIGIGAGAGAGAGAGASIWHSAIGTQ
FPALGSRLSALGSRLSALGSRADSVRYPTFAVGPLRRTERRHTKICDESNLLRASPMS
SRAIASRSGSMRASVTYRRFVSSAPGDIRAKREPGGRAAAAAGTNTGAPSCEWRACDC
APRTPDADRASRGNTRCAAGATRAASR"
gene 96308..96853
/locus_tag="BMA10229_A0096"
/db_xref="GeneID:4792687"
CDS 96308..96853
/locus_tag="BMA10229_A0096"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026105.1"
/db_xref="GI:124386327"
/db_xref="GeneID:4792687"
/translation="MSQRILSPLVASCAAAALLSAFAAHAAPPIKGSVLGGNDGQLQY
TVKVDSKQFGTMQETRKIRSGETDDYNWKSVPPSGAVPMPDACPNADTLPRDANGAMV
RQAQVRLAPAVDSKGVANVQLSFQASAPSGTKKVTVNGKALQCPNVVAVSQVKWLSIP
TGGSKSITMRDGTKITVSIKR"
gene complement(97521..98339)
/locus_tag="BMA10229_A0097"
/db_xref="GeneID:4791637"
CDS complement(97521..98339)
/locus_tag="BMA10229_A0097"
/note="identified by match to protein family HMM PF03649;
match to protein family HMM TIGR00245"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026106.1"
/db_xref="GI:124385968"
/db_xref="GeneID:4791637"
/translation="MNTPLQDLSLVDVGIAAALVAINGAISVALSLGLGRKLAWAAAR
TVVQLLAIGYVLGWVFGHPRWYVVLPLVALMTLIAGFAGAARGKRTYAGQRADSVLSI
WASSWFVAAIGLFVVIRIHPWYAPQYAIPILGMILGNTLTGVSLGVERMMEELTARRD
RVETALALGATRWEAAQDAARQAVRAGMLPTLNQMAVVGVVSLPGMMTGQVLAGQSPL
QAVRYQIVIMFLIAAASALGTVGAVLSTYRRLFSAEHRFLASRLVERERTANGG"
misc_feature complement(97557..98330)
/locus_tag="BMA10229_A0097"
/note="ABC-type uncharacterized transport system, permease
component [General function prediction only]; Region:
COG0390"
/db_xref="CDD:223467"
gene complement(98336..99031)
/locus_tag="BMA10229_A0098"
/db_xref="GeneID:4792001"
CDS complement(98336..99031)
/locus_tag="BMA10229_A0098"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_001026107.1"
/db_xref="GI:124384909"
/db_xref="GeneID:4792001"
/translation="MTADVLIEARQLARRDAARGKTLLAPSDFALAAGERIALTGPSG
SGKSVFLRALALLDPIDGGELLWRGTRVPRPAIPRYRRSVAYVRQRPATAEGTVEDLL
RYPYSLAVYRDARFDAARVARLAAQAGRGDDFLRKAASELSGGEAQIAALLRVLQLDP
DVLLLDEPTSALDPDSTRAIEALVAAWFDAAPAARAYLWISHDPAQAARVGRRRLTMR
AGVLGDAATQDAR"
misc_feature complement(98354..99016)
/locus_tag="BMA10229_A0098"
/note="ABC-type uncharacterized transport system, ATPase
component [General function prediction only]; Region:
COG4619"
/db_xref="CDD:226970"
misc_feature complement(98366..98950)
/locus_tag="BMA10229_A0098"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(98888..98911)
/locus_tag="BMA10229_A0098"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(98426..98428,98531..98536,98765..98767,
98885..98893,98897..98902))
/locus_tag="BMA10229_A0098"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature complement(98765..98776)
/locus_tag="BMA10229_A0098"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature complement(98579..98608)
/locus_tag="BMA10229_A0098"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(98531..98548)
/locus_tag="BMA10229_A0098"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature complement(98513..98524)
/locus_tag="BMA10229_A0098"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(98420..98440)
/locus_tag="BMA10229_A0098"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 99165..101657
/locus_tag="BMA10229_A0099"
/db_xref="GeneID:4793131"
CDS 99165..101657
/locus_tag="BMA10229_A0099"
/note="identified by match to protein family HMM PF05170"
/codon_start=1
/transl_table=11
/product="AsmA family protein"
/protein_id="YP_001026108.1"
/db_xref="GI:124385936"
/db_xref="GeneID:4793131"
/translation="MALTRTLGKTAAWIVGIFAVLTAAVGVFIFTFDWNRAKPWINEQ
ASASIGRPFEIRGDIKVGWRRPDGETGWRAWVPWPVFSASRIVIGNPPWAKAPNFATL
DEARFELAVLPLLAHEVVIPTIELVNPALDIERLADGRNNWTFEFKQSAGPSPWKVQL
RDFGFAKGTVVYRDAITKADLSVAVDTLGQPIPLGDVLRQQEETSRAASAQRVGKRGA
AQLAAKAQAQIASDASAASAAGAPNASGAAAASGASGVNAAASAAKVSGNDRSRAARA
TAGASAASKPAAAASGGSAAAVAAGKAPAAGAGGAVASASASAASSASAVSTSAAVSG
ASGARGASGASAASAAEQRSAGPTYAFGLTVKGRYKGVPIDGTGKVGGVLSLRDASRP
FPLQADVKAGDTRLAIVGTLTDPVHLAAIDLRLWLQGSSMSHLYPLTGVTLPDTPPYA
TEGRLVGRFKRAASTFRYENFNGRVGGSDLRGTLVYQQRAPRPLLSGELVSNLLQFSD
LAPIIGADTAASKARRGDTTKQPPGRVLPVETFRTDRWRALDADVKFTGRKLIKSAAL
PISDLYTHIVMTDGVLSLEPLKFGVAGGSLATTAHLDGSAAPLKGRFSVAARHLKLKQ
LFPTQKVMQSALGEINGDAALSATGNSPAALAATSNGEVKMLMTDGAISRLLMEAAGL
NVANVLYEKMFGSHDVKINCAAVDFVATNGLLDTKLFAFDTDDALINIDGPIDLRNES
MNLKVHPHTKGFRVFSLRSPLYVKGTFKNPDVGVDAAALALRAGAMVGLGLVNPFAAL
IPLIAPSNNRDVPCSELFAQLKAPQKAANARK"
misc_feature <100257..101477
/locus_tag="BMA10229_A0099"
/note="Uncharacterized protein involved in outer membrane
biogenesis [Cell envelope biogenesis, outer membrane];
Region: AsmA; COG2982"
/db_xref="CDD:32801"
misc_feature 100866..>101399
/locus_tag="BMA10229_A0099"
/note="AsmA-like C-terminal region; Region: AsmA_2;
pfam13502"
/db_xref="CDD:205680"
gene 101908..103707
/locus_tag="BMA10229_A0100"
/db_xref="GeneID:4792151"
CDS 101908..103707
/locus_tag="BMA10229_A0100"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_001026109.1"
/db_xref="GI:124384967"
/db_xref="GeneID:4792151"
/translation="MRGMPPNGTRKPRTRRPIDLAPFLRFRSRPEKSAWPVRFRGPKR
MRRSDSSTPAKIPGFPSIYLLTGSAVLSTANITMQFGPKPLFENISVKFGEGNRYGLI
GANGCGKSTFMKILGGDLEPSAGNVALEPNVRLGKLRQDQFAYEDVRVLDVVMMGHTE
MWAAMTERDAIYANPEATDDDYMHAAELEAKFAEYGGYDAEARAGALLLGIGIEEKFH
SGPMRDVAPGWKLRVLLAQALFSNPDVLLLDEPTNNLDINSIRWLEDTLNNYDSTMII
ISHDRHFLNSVCTHMADMDYGTLKVWPGNYDDYMLASAQARERQAAANARAKERVAEL
QDFVRRFSANKSKARQATSRAKQIDKIKIEEFKPSSRQNPFIRFEFEKKLHNIAVVAD
SITKKYERTIFENFNLSVQPGERIAIIGENGAGKTTLLRALFGNLTLDHGTVKWAENA
NVGYMPQDTYEEFPNDVTLMDWIDQYRKDGDDETMVRGTLGRLLFSADDIKKSVKVLS
GGEKGRMIWGKLMLGRHNVLLMDEPTNHMDMESIESLQIALEKFEGTLIFVSHDREFV
SGLANRIIEVTTEGKLVDFGGNYEDFLASKGLQ"
misc_feature 102115..103704
/locus_tag="BMA10229_A0100"
/note="ABC transporter ATP-binding protein; Provisional;
Region: PRK15064"
/db_xref="CDD:185024"
misc_feature 102118..102747
/locus_tag="BMA10229_A0100"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 102214..102237
/locus_tag="BMA10229_A0100"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(102223..102228,102232..102240,102325..102327,
102652..102657,102742..102744)
/locus_tag="BMA10229_A0100"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 102316..102327
/locus_tag="BMA10229_A0100"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 102580..102609
/locus_tag="BMA10229_A0100"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature <102589..102801
/locus_tag="BMA10229_A0100"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
misc_feature 102640..102657
/locus_tag="BMA10229_A0100"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 102664..102675
/locus_tag="BMA10229_A0100"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 102730..102747
/locus_tag="BMA10229_A0100"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 102781..103041
/locus_tag="BMA10229_A0100"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:205105"
misc_feature 103072..103638
/locus_tag="BMA10229_A0100"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
gene complement(104054..104452)
/locus_tag="BMA10229_A0101"
/db_xref="GeneID:4793008"
CDS complement(104054..104452)
/locus_tag="BMA10229_A0101"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026110.1"
/db_xref="GI:124383905"
/db_xref="GeneID:4793008"
/translation="MKTGSTLTIEFDQALNQKSPGTLNVFLHPANGGVRIDLDSGNQG
EPAKILWLPWKQGELQTLQPGSISTVDMLFFTYYLSGCKVFAGDGGPVWHIDAPVEAN
QFWRRMSSDEWMEDWEVGTDRQVAYLHRAG"
misc_feature complement(<104057..104452)
/locus_tag="BMA10229_A0101"
/note="Burkholderia Lethal Factor 1; Region: BPSL1549;
cd12812"
/db_xref="CDD:214010"
gene 104804..106240
/gene="aldA"
/locus_tag="BMA10229_A0102"
/db_xref="GeneID:4791167"
CDS 104804..106240
/gene="aldA"
/locus_tag="BMA10229_A0102"
/EC_number="1.2.1.3"
/note="identified by match to protein family HMM PF00171"
/codon_start=1
/transl_table=11
/product="aldehyde dehydrogenase"
/protein_id="YP_001026111.1"
/db_xref="GI:124386485"
/db_xref="GeneID:4791167"
/translation="MKTCEQFYIGGAWRPSTGKGMIDVIDSGTEAVIGRVPEGTAEDA
KAAVAAARAAFDGWAATPPAERARYLHKITENLKARSEELAQSITGEVGMPIKLSRAI
QVGGPIYNWGAYAKLAETFAFEEQVGNSLVVREPVGVVAAITPWNYPLNQITLKVAAA
LAAGCTVALKPSEVAPLNAFILAEAIHDAGLPAGVFNLVCGYGPVVGEALASDADVDM
VSFTGSTRAGKRVAELAAAGVKRVALELGGKSASVILDDADFAAAVKGTVSACYLNAG
QTCSAHTRMLVPESRYEEARDLAKAAAQAYVAGDPRDDATRLGALASSVQQKRVQDYI
RRSIDEGAELVTGGLGMPEGITRGFFVKPTVFGRVKPDATIAQEEIFGPVLSILTYRD
EDDAVRIANDSPYGLGGAVWAGSDERAMRVARRIRTGQVDINGGAWNMAAPFGGFKQS
GIGRENGVYGLDEYLEYKSMQLRPHKRA"
misc_feature 104822..106219
/gene="aldA"
/locus_tag="BMA10229_A0102"
/note="Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like; Region: ALDH_CddD_SSP0762; cd07138"
/db_xref="CDD:143456"
misc_feature 104840..106210
/gene="aldA"
/locus_tag="BMA10229_A0102"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature order(105230..105244,105311..105313,105422..105424,
105464..105475,105482..105484,105491..105493,
105536..105544,105638..105640,105938..105940,
105944..105946,106133..106135)
/gene="aldA"
/locus_tag="BMA10229_A0102"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:143456"
misc_feature order(105242..105244,105536..105538,105629..105631,
105638..105640)
/gene="aldA"
/locus_tag="BMA10229_A0102"
/note="catalytic residues [active]"
/db_xref="CDD:143456"
gene 106439..107629
/locus_tag="BMA10229_A0103"
/db_xref="GeneID:4791615"
CDS 106439..107629
/locus_tag="BMA10229_A0103"
/note="identified by match to protein family HMM PF03060"
/codon_start=1
/transl_table=11
/product="2-nitropropane dioxygenase"
/protein_id="YP_001026112.1"
/db_xref="GI:124384337"
/db_xref="GeneID:4791615"
/translation="MTGSIPFPPLMIRGRSLLPIVQGGMGVGISAHRLAGSVAREGAL
GTIASIDLRHHHTDLIERCKRHPDRETMEAANLEALAREIQRAKTWGEGRGMIAVNVM
KAVRSHADYVRIACEFGADAIVMGAGLPLDLPDMTQGHDIALIPILSDSRGIALVLKK
WMKKGRLPDAIVIEHPARAGGHLGVTSLDDMDDPRFEFARVIDETRQTFATLGLERER
IALVVAGGINSHEAVRAALAEGANGVQVGTPFAVTEEGDAHPNFKRVLANAKPDDIVE
FLSVTGLPARAVKTPWLERYLRHETRIRAKIGALKQRCPSALECLSVCGLRDGIERFG
HFCIDTRLAAALRGDVANGLFFRGREALPFGQAIRSVRDLLELLLTGTAPEAAANRPT
FSLS"
misc_feature 106457..107596
/locus_tag="BMA10229_A0103"
/note="Dioxygenases related to 2-nitropropane dioxygenase
[General function prediction only]; Region: COG2070"
/db_xref="CDD:224981"
misc_feature 106490..107302
/locus_tag="BMA10229_A0103"
/note="2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes oxidative
denitrification of nitroalkanes to their corresponding
carbonyl compounds and nitrites. NDP is a member of the
NAD(P)H-dependent flavin oxidoreductase...; Region:
NPD_like; cd04730"
/db_xref="CDD:240081"
misc_feature order(106508..106513,106742..106744,106814..106816,
106877..106879,106958..106960,106973..106978,
107108..107116,107171..107182)
/locus_tag="BMA10229_A0103"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:240081"
misc_feature 106979..106984
/locus_tag="BMA10229_A0103"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:240081"
misc_feature 106982..106984
/locus_tag="BMA10229_A0103"
/note="putative catalytic residue [active]"
/db_xref="CDD:240081"
gene 107702..108346
/locus_tag="BMA10229_A0104"
/db_xref="GeneID:4793744"
CDS 107702..108346
/locus_tag="BMA10229_A0104"
/note="identified by match to protein family HMM PF03922"
/codon_start=1
/transl_table=11
/product="OmpW family outer membrane protein"
/protein_id="YP_001026113.1"
/db_xref="GI:124384634"
/db_xref="GeneID:4793744"
/translation="MRRQTIRTCTTAIACAAGLAMIPSLSHAASPGEGINQGDIIARV
RGISIMPDERTSNTLSALNVGVNNAIVPELDFTYMIRDYLGVELILGTSRHQITSSLG
DLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGINYTLFYNNGLHAGGEGIGINNHSFGP
ALQFGVDVQVTKKVFVNVDVKKIWMHTDATLGGQPLGRLNIDPLVVGVGVGMKF"
misc_feature 107783..108343
/locus_tag="BMA10229_A0104"
/note="Outer membrane protein W [Cell envelope biogenesis,
outer membrane]; Region: OmpW; COG3047"
/db_xref="CDD:225589"
gene complement(108472..108675)
/locus_tag="BMA10229_A0105"
/db_xref="GeneID:4793399"
CDS complement(108472..108675)
/locus_tag="BMA10229_A0105"
/note="identified by match to protein family HMM PF06945"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026114.1"
/db_xref="GI:124383633"
/db_xref="GeneID:4793399"
/translation="MTSNLHDKPDSPCIGVCSTLFDEVCKGCGRTALEVANWVFMTDA
EKQAVWERITREGTAMRFQYDKL"
misc_feature complement(<108517..108654)
/locus_tag="BMA10229_A0105"
/note="Predicted Fe-S protein [General function prediction
only]; Region: COG3313"
/db_xref="CDD:225850"
gene complement(109086..110393)
/locus_tag="BMA10229_A0106"
/db_xref="GeneID:4793993"
CDS complement(109086..110393)
/locus_tag="BMA10229_A0106"
/note="identified by match to protein family HMM PF01566;
match to protein family HMM TIGR01197"
/codon_start=1
/transl_table=11
/product="Mn2+/Fe2+ transporter"
/protein_id="YP_001026115.1"
/db_xref="GI:124386018"
/db_xref="GeneID:4793993"
/translation="MNSRPLAARSPSSRRPSASGGPGGGRRWAAFVGAGVLVAVGYMD
PGNWATALAGGAGYGYALLGVVIAASLMAMLLQWLAARIGVVSGRDLAQLCRERFDPR
ATVLLWIAAEIAIVACDVAEVVGAAVALQMLLGVSLSTGVLVSAVGTLAMLGLERHGR
RTLEAAIASLIFFVGLCFVIEVALARPDWHAALAGAAPSPRLLREPGMLWLAAGILGA
TVMPHNLYLHSMLVKHHASTRDEPSIRRALFGVNLDTFVSLGFAFVINAALLIVAAAV
FHASGHDDVTDLADAHRLIAPLVGNRWAGPLFAAALLACGLSATVTGTLAGQAIMEGF
LKLTLPRWQRALLTRALAIGPALAAVGLFGQHGSNQLLVASQVVLSLQLPLAMVPLVV
FASSRALMGRWRVRGLPLAAAWMCAAAIVALNGALVWQVVAAG"
misc_feature complement(109089..110270)
/locus_tag="BMA10229_A0106"
/note="manganese transport protein MntH; Reviewed; Region:
PRK00701; cl15845"
/db_xref="CDD:210245"
misc_feature complement(109176..110201)
/locus_tag="BMA10229_A0106"
/note="Natural resistance-associated macrophage protein;
Region: Nramp; pfam01566"
/db_xref="CDD:201864"
gene 110804..111874
/gene="potF"
/locus_tag="BMA10229_A0107"
/db_xref="GeneID:4792051"
CDS 110804..111874
/gene="potF"
/locus_tag="BMA10229_A0107"
/note="identified by match to protein family HMM PF01547"
/codon_start=1
/transl_table=11
/product="putrescine ABC transporter periplasmic
putrescine-binding protein"
/protein_id="YP_001026116.1"
/db_xref="GI:124385645"
/db_xref="GeneID:4792051"
/translation="MTALALCAGATVAAAKDTQLNVYNWSDYIAKDTIPNFEKQTGVK
VRYDNYDSDDTLQAKLLTGNSGYDIVVPTGNYAGKQIQAGIFTPLDKSKLPNLKYLDA
QLMALVAGADPGNKYVVPWAYGTTGLGYNVDKAQKVLGKVPLDNWDILFKPENLSKLK
TCGVSVLDAPDQMFAATLHYIGKDPMSTNPADYQAAMQVLKKIRPYITQFNSSGYIND
MVGGDICFAFGWSGDVVIAKHRALEAKKPYKLEYYVPKGGAPVWFDVMAIPKDAKNKD
AALQWINYIEDPKVHASITNAVYYPSANAQARKYVRPDVANDPAVYPPPDVVKTLFLL
KPLPPEIQRLQTRLWTELKSGR"
misc_feature 110849..111871
/gene="potF"
/locus_tag="BMA10229_A0107"
/note="putrescine transporter subunit: periplasmic-binding
component of ABC superfamily; Provisional; Region:
PRK10682"
/db_xref="CDD:182645"
misc_feature 111002..111673
/gene="potF"
/locus_tag="BMA10229_A0107"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
gene 111965..113125
/gene="potG"
/locus_tag="BMA10229_A0108"
/db_xref="GeneID:4792399"
CDS 111965..113125
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="identified by match to protein family HMM PF00005;
match to protein family HMM PF08402; match to protein
family HMM TIGR01187"
/codon_start=1
/transl_table=11
/product="putrescine ABC transporter ATP-binding protein"
/protein_id="YP_001026117.1"
/db_xref="GI:124384807"
/db_xref="GeneID:4792399"
/translation="MNSQSGAAMAGAPSYRPQTGADGRAENFVQIIDVVKKFGETVAV
RNVELSVRKGELFALLGSSGCGKSTLLRMLAGLETITSGKILIDGEDLAQMPPYKRPV
NMMFQSYALFPHMTVEANVAFGLKQEGVPKAELKERVRDALELVQMARYASRKPHQLS
GGQQQRVALARSLVKRPKLLLLDEPMSALDKQIRQRTQIELVNILDKVGVTCIMVTHD
QEEAMTMAGRLAVMSEGQIVQIGTPHEVYEYPNCRFSAEFIGSTNLFEGVTVEDEPDH
VFIESPDLPCRLYVNHGITGPLGMPVTVSVRPERIALTRKPADGAYNWGRGVVTNVAY
MGGYSLYHVKLDSGKTVIANVSSLAIADLDSPGWGDEIYVRWSAAAGVVLTS"
misc_feature 112010..113119
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="putrescine transporter ATP-binding subunit;
Provisional; Region: potG; PRK11607"
/db_xref="CDD:183226"
misc_feature 112049..112744
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 112145..112168
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(112154..112159,112163..112171,112283..112285,
112511..112516,112613..112615)
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 112274..112285
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 112439..112468
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 112499..112516
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 112523..112534
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 112601..112621
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 112874..113116
/gene="potG"
/locus_tag="BMA10229_A0108"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:203932"
gene 113122..114051
/gene="potH"
/locus_tag="BMA10229_A0109"
/db_xref="GeneID:4793210"
CDS 113122..114051
/gene="potH"
/locus_tag="BMA10229_A0109"
/note="identified by match to protein family HMM PF00528"
/codon_start=1
/transl_table=11
/product="putrescine ABC transporter permease PotH"
/protein_id="YP_001026118.1"
/db_xref="GI:124383849"
/db_xref="GeneID:4793210"
/translation="MNALSSLFAWPVRKFGLTGRTAVIAGPFFWLVLFFLVPFVLVVK
ISFAQLQLGIPPYTELTALADGVLSIKLNLQHYAFLFSDSLYFATYVNSVVVAAVTTL
LCLLIGYPMAYYIARSNPGTRNLLMMAVMLPFWTSFLIRVYAWIGILKNNGLLNNFLL
WTGLISTPIELYRTNVGVYIGMVYSYLPFLVMPLYAHLVKMDLRLLEAAYDLGAKPWK
AFVQITLPLSKNGIIAGCLLVFIPAVGEYVIPELLGGANTLMIGRVMWNEFFNNADWP
MASAVTCAMVLLLLVPMAMFQHFQAKEQEGHCR"
misc_feature 113254..114042
/gene="potH"
/locus_tag="BMA10229_A0109"
/note="ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism]; Region: PotB; COG1176"
/db_xref="CDD:31369"
misc_feature 113440..113964
/gene="potH"
/locus_tag="BMA10229_A0109"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(113440..113442,113449..113454,113467..113469,
113497..113508,113512..113541,113548..113553,
113557..113559,113668..113673,113680..113682,
113686..113688,113695..113700,113704..113706,
113716..113721,113728..113730,113779..113781,
113821..113826,113833..113835,113854..113865,
113872..113877,113908..113913,113941..113946,
113953..113958,113962..113964)
/gene="potH"
/locus_tag="BMA10229_A0109"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(113515..113559,113854..113871)
/gene="potH"
/locus_tag="BMA10229_A0109"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(113557..113559,113653..113655,113872..113874,
113902..113904,113911..113913,113941..113943)
/gene="potH"
/locus_tag="BMA10229_A0109"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(113731..113769,113785..113790,113800..113802)
/gene="potH"
/locus_tag="BMA10229_A0109"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 114048..114866
/gene="potI"
/locus_tag="BMA10229_A0110"
/db_xref="GeneID:4791111"
CDS 114048..114866
/gene="potI"
/locus_tag="BMA10229_A0110"
/note="identified by match to protein family HMM PF00528"
/codon_start=1
/transl_table=11
/product="putrescine ABC transporter permease PotI"
/protein_id="YP_001026119.1"
/db_xref="GI:124384560"
/db_xref="GeneID:4791111"
/translation="MKPNRYLQVLMLAIGFGFLYIPIASLVVYSFNDSKLVTVWSGFS
TRWYAALVEDDELIAAAWLSLKIAVMTAFASVFIGTWAGFVLARMGRFRGFALYSGMI
NAPLVIPEVIQGISLLLLFIELGKWFGWPAGRGMFTIWLGHVMLCISYVAIIVQSRVR
ELNPSLEEAALDLGATPFRVFFSITLPLISQALVSGWLLSFTLSIDDLVLSAFLSGPG
STTLPLVVFSRVRLGLNPEMNALATLFIVAVTIGVVAANYVMLRQEKRRMAEAA"
misc_feature 114060..114848
/gene="potI"
/locus_tag="BMA10229_A0110"
/note="ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism]; Region: PotC; COG1177"
/db_xref="CDD:224098"
misc_feature 114228..114806
/gene="potI"
/locus_tag="BMA10229_A0110"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(114276..114281,114288..114293,114306..114308,
114339..114350,114354..114383,114390..114395,
114399..114401,114477..114482,114489..114491,
114495..114497,114504..114509,114513..114515,
114525..114530,114537..114539,114588..114590,
114630..114635,114642..114644,114663..114674,
114681..114686,114723..114728,114756..114761,
114768..114773,114777..114782,114789..114794,
114801..114806)
/gene="potI"
/locus_tag="BMA10229_A0110"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(114357..114401,114663..114680)
/gene="potI"
/locus_tag="BMA10229_A0110"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(114399..114401,114462..114464,114681..114683,
114717..114719,114726..114728,114756..114758)
/gene="potI"
/locus_tag="BMA10229_A0110"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(114540..114578,114594..114599,114609..114611)
/gene="potI"
/locus_tag="BMA10229_A0110"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(115118..115237)
/locus_tag="BMA10229_A0111"
/note="membrane protein, truncation"
/pseudo
/db_xref="GeneID:4793504"
gene 115349..115612
/locus_tag="BMA10229_A0112"
/db_xref="GeneID:4790733"
CDS 115349..115612
/locus_tag="BMA10229_A0112"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001026120.1"
/db_xref="GI:124386632"
/db_xref="GeneID:4790733"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLAEAMLDMEALKVVVKGKP"
misc_feature 115352..115549
/locus_tag="BMA10229_A0112"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 115636..116469
/locus_tag="BMA10229_A0113"
/db_xref="GeneID:4791416"
CDS 115636..116469
/locus_tag="BMA10229_A0113"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS1404 transposase"
/protein_id="YP_001026121.1"
/db_xref="GI:124386170"
/db_xref="GeneID:4791416"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature 115693..116409
/locus_tag="BMA10229_A0113"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature 115738..115908
/locus_tag="BMA10229_A0113"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature 115954..116292
/locus_tag="BMA10229_A0113"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 116203..116403
/locus_tag="BMA10229_A0113"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene 116753..117253
/locus_tag="BMA10229_A0114"
/db_xref="GeneID:4791842"
CDS 116753..117253
/locus_tag="BMA10229_A0114"
/note="identified by match to protein family HMM PF01478"
/codon_start=1
/transl_table=11
/product="peptidase"
/protein_id="YP_001026122.1"
/db_xref="GI:124383829"
/db_xref="GeneID:4791842"
/translation="MIHLFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTV
CRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLSALPRLWV
VASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGARRAAPYAAFLVAPAAAWLAYLI
HTGGTR"
misc_feature 116813..>117118
/locus_tag="BMA10229_A0114"
/note="Type IV leader peptidase family; Region:
Peptidase_A24; cl02077"
/db_xref="CDD:154734"
gene 117250..117717
/locus_tag="BMA10229_A0115"
/db_xref="GeneID:4791252"
CDS 117250..117717
/locus_tag="BMA10229_A0115"
/note="identified by match to protein family HMM PF07811"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026123.1"
/db_xref="GI:124384304"
/db_xref="GeneID:4791252"
/translation="MTRALGRLRSPRRQRGATAIEFAILFPMFFLILYGIITYGMIFA
AQQSLTLAATEGARAALNYQVAQTQSAALGLRAAAACTAANNLTGWLSGATCTTSTNY
TCSYDSTMYCIQVTLTYPYAANPLVPAVALFDAVLPTTLTSRATVQINPTNII"
misc_feature 117283..>117429
/locus_tag="BMA10229_A0115"
/note="Flp pilus assembly protein TadG [Intracellular
trafficking and secretion]; Region: TadG; COG4961"
/db_xref="CDD:227296"
misc_feature 117295..117423
/locus_tag="BMA10229_A0115"
/note="TadE-like protein; Region: TadE; pfam07811"
/db_xref="CDD:203769"
gene 117795..118694
/locus_tag="BMA10229_A0116"
/db_xref="GeneID:4793711"
CDS 117795..118694
/locus_tag="BMA10229_A0116"
/note="identified by match to protein family HMM PF08666;
match to protein family HMM TIGR03177"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026124.1"
/db_xref="GI:124385109"
/db_xref="GeneID:4793711"
/translation="MANHLTKIIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVAT
AMVPVVVAARALPAGQPIPADALKVQQTPTPIAGAFPNPMLVTGRIPASDIGAQAPVL
ESELMSGLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEI
AQTQARLLLSRVRVLSFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGR
LVFALRSPRDEDIAAQTVAIRAPAGAGPSNQAATGLVLSELSGSGAPAQAPRAAPTRV
TAAPHAAGSIEVIRGGRAETLAY"
misc_feature 117969..118547
/locus_tag="BMA10229_A0116"
/note="Domains similar to fish antifreeze type III
protein; Region: SAF; cl00555"
/db_xref="CDD:212235"
gene 118758..120083
/locus_tag="BMA10229_A0117"
/db_xref="GeneID:4792971"
CDS 118758..120083
/locus_tag="BMA10229_A0117"
/note="identified by match to protein family HMM PF00263"
/codon_start=1
/transl_table=11
/product="type II/III secretion system protein"
/protein_id="YP_001026125.1"
/db_xref="GI:124383520"
/db_xref="GeneID:4792971"
/translation="MKNKLIAWAVAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGV
QRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAAR
ALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVV
QVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIA
SAFNLVVGSATRGLFADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQS
LGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRR
ADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVII
VTPHLVAPIAKNASLPATPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK"
misc_feature 118821..120023
/locus_tag="BMA10229_A0117"
/note="Flp pilus assembly protein, secretin CpaC
[Intracellular trafficking and secretion]; Region: CpaC;
COG4964"
/db_xref="CDD:227299"
misc_feature 118833..119045
/locus_tag="BMA10229_A0117"
/note="Pilus formation protein N terminal region; Region:
T2SS-T3SS_pil_N; pfam13629"
/db_xref="CDD:205806"
misc_feature 119472..119951
/locus_tag="BMA10229_A0117"
/note="Bacterial type II and III secretion system protein;
Region: Secretin; pfam00263"
/db_xref="CDD:215826"
gene 120171..121388
/locus_tag="BMA10229_A0118"
/db_xref="GeneID:4793880"
CDS 120171..121388
/locus_tag="BMA10229_A0118"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026126.1"
/db_xref="GI:124384374"
/db_xref="GeneID:4793880"
/translation="MAEPAVTDYFVCASPHGEHVSWLAQTLVSAGTVEPAPLEPTALA
QRIAGLNPVLVFVDFSGGHAQAASAAAAALRVSHPGLPIVALGSLGEPESALAALRAG
VRDFIDFSAPAEDALRITRGLLDHVGDQPSRHGRLIALLGARAGMGASTLAANLSVLV
QKRSAALGRQTALVDLGLPAGDGALFLNTRCEFDFVEAVRNLRRFDRTFVNTALARHA
SGVALTSLPPNLAGLRDVSYASCVGLMNRLRAFFDCQIVDLGGFSNRDFVAQTANAAD
ESWLLCDQGVASVVSAVELLESLRDTGVDTENVRLVVNQYDPALGLAPAQIAERLGLA
LAATLPSRRVPIGHAANQGKLIVDVAERDPYVRALEPLVERATGGAGAAAPRPAGGLS
ALRRFIQPTSKRS"
misc_feature 120198..121289
/locus_tag="BMA10229_A0118"
/note="Flp pilus assembly protein, ATPase CpaE
[Intracellular trafficking and secretion]; Region: CpaE;
COG4963"
/db_xref="CDD:34570"
misc_feature 120579..>120737
/locus_tag="BMA10229_A0118"
/note="This protein family consists of proteins similar to
the cpaE protein of the Caulobacter pilus assembly and the
orf4 protein of Actinobacillus pilus formation gene
cluster. The function of these proteins are unkown. The
Caulobacter pilus assembly contains...; Region: CpaE_like;
cd03111"
/db_xref="CDD:73340"
gene 121726..122733
/locus_tag="BMA10229_A0119"
/db_xref="GeneID:4793640"
CDS 121726..122733
/locus_tag="BMA10229_A0119"
/note="identified by match to protein family HMM PF00437"
/codon_start=1
/transl_table=11
/product="secretion system protein"
/protein_id="YP_001026127.1"
/db_xref="GI:124385758"
/db_xref="GeneID:4793640"
/translation="MSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDA
RLPDGGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFNDEIGALLEAAVVAR
CNILVSGGTSSGKTSLLNALAFHIPGIERVVTIEDTAELSLNHPHVVRLESRPGGFDG
TGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGTIHASSPRECL
YRLEMLAGFAGFQGTESSLRRQIANAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIA
TQELYRYEPRVNADGDEIDAWESLGIHPHSPKLARFRQALSGGGFGGGEPYGRGGGFN
V"
misc_feature 121732..122526
/locus_tag="BMA10229_A0119"
/note="P-type DNA transfer ATPase VirB11; Region: VirB11;
TIGR02788"
/db_xref="CDD:163021"
misc_feature 121957..122514
/locus_tag="BMA10229_A0119"
/note="Type IV secretory pathway component VirB11, and
related ATPases. The homohexamer, VirB11 is one of eleven
Vir proteins, which are required for T-pilus biogenesis
and virulence in the transfer of T-DNA from the Ti
(tumor-inducing) plasmid of bacterial to...; Region:
VirB11-like_ATPase; cd01130"
/db_xref="CDD:29996"
misc_feature order(121966..121968,122059..122076,122497..122499)
/locus_tag="BMA10229_A0119"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29996"
misc_feature order(122050..122055,122065..122073)
/locus_tag="BMA10229_A0119"
/note="Walker A motif; other site"
/db_xref="CDD:29996"
misc_feature order(122056..122061,122116..122118,122140..122142,
122161..122172,122176..122181,122248..122256,
122260..122262,122299..122301,122311..122313,
122320..122325,122353..122361,122371..122373,
122380..122382,122482..122484)
/locus_tag="BMA10229_A0119"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:29996"
misc_feature 122263..122280
/locus_tag="BMA10229_A0119"
/note="Walker B motif; other site"
/db_xref="CDD:29996"
gene 122726..123646
/locus_tag="BMA10229_A0120"
/db_xref="GeneID:4792333"
CDS 122726..123646
/locus_tag="BMA10229_A0120"
/note="identified by match to protein family HMM PF00482"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026128.1"
/db_xref="GI:124386324"
/db_xref="GeneID:4792333"
/translation="MSSAALWALALALLCVAGAFALWRRGEANRERAHAARYIDSRLE
PGARAEKPAEGLARWRERAADAWLNVSNRAGVSEIRAPLAALAATTAVATLWAGLRGG
LLAACAALVAGATLAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT
LQTTEAPLRGCLDHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRA
DVMLDRMAVFMRDLEQAERELVAMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMW
LDPTGRQLVYLAFILQIAGGYWLYRLARLR"
misc_feature <123083..123637
/locus_tag="BMA10229_A0120"
/note="Flp pilus assembly protein TadB [Intracellular
trafficking and secretion]; Region: TadB; COG4965"
/db_xref="CDD:34572"
misc_feature 123140..123523
/locus_tag="BMA10229_A0120"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:201255"
gene 123652..124662
/locus_tag="BMA10229_A0121"
/db_xref="GeneID:4791815"
CDS 123652..124662
/locus_tag="BMA10229_A0121"
/note="identified by match to protein family HMM PF00482"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026129.1"
/db_xref="GI:124383879"
/db_xref="GeneID:4791815"
/translation="MDPSRLGAIALVLGAIGVLMLAALAIMQAVLARRTGRTLADALD
QRAAALEAAAARVAAGAAGAARAGMPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGK
QIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVALVGGEPVRTHLGAWVAL
SVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRG
MLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEP
LKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHALTAA
RR"
misc_feature <124117..124647
/locus_tag="BMA10229_A0121"
/note="Flp pilus assembly protein TadC [Cell motility and
secretion / Intracellular trafficking and secretion];
Region: TadC; COG2064"
/db_xref="CDD:32247"
gene 124699..125634
/locus_tag="BMA10229_A0122"
/db_xref="GeneID:4791141"
CDS 124699..125634
/locus_tag="BMA10229_A0122"
/note="identified by match to protein family HMM PF07719"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026130.1"
/db_xref="GI:124383557"
/db_xref="GeneID:4791141"
/translation="MRRNGFSPMTTAALAALALSLAACGAFKESGYGIGAQAERAALM
QAAADKNATPDTPGMYLGLIGRMQSQGLYYASLAHIDAYEKQYGASPDTILLRADALR
STDQPAASTVAYRQLLGTPLAARGYRGLGLLAGASGDFDAASQALAQASALAPTDSPT
LSDLAYARMRSGDIAGARVPLMKAAELDQNNPKILSNLALFLLATGQTRDALGLMNQL
KLAPAVRAEIRNDATRIAAAARARQRALARPGAPGAAASAGATLAASAAGSNGGAAAG
KGAVAGSGASAPGAAATATAAAFEPTVPLLQRFSQ"
misc_feature 125176..125364
/locus_tag="BMA10229_A0122"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 125179..>125364
/locus_tag="BMA10229_A0122"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
misc_feature order(125182..125187,125194..125199,125284..125289,
125293..125298,125305..125310)
/locus_tag="BMA10229_A0122"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(125191..125193,125227..125229,125239..125241,
125248..125250,125293..125295,125329..125331,
125341..125343)
/locus_tag="BMA10229_A0122"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene 125656..126042
/locus_tag="BMA10229_A0123"
/db_xref="GeneID:4793917"
CDS 125656..126042
/locus_tag="BMA10229_A0123"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026131.1"
/db_xref="GI:124384203"
/db_xref="GeneID:4793917"
/translation="MTTHDLTQTAAPRAGRGRALCAAALALALACAVGAARAQSPQRD
APSASEIGHATQTWFALQASNREAAPAQPMIGEAASLAYARYIESFRTKIPAFYGSAA
GMSGMSGGGGGGGGAGYSLAPAPGSQ"
misc_feature 125785..125946
/locus_tag="BMA10229_A0123"
/note="Protein of unknown function (DUF3613); Region:
DUF3613; pfam12266"
/db_xref="CDD:152701"
gene 126050..127858
/locus_tag="BMA10229_A0124"
/db_xref="GeneID:4790743"
CDS 126050..127858
/locus_tag="BMA10229_A0124"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026132.1"
/db_xref="GI:124385206"
/db_xref="GeneID:4790743"
/translation="MPLARRRAERRPPARGRGPIARERGSFALVAAIWMLVAIAALGA
VDIGNVFFVRRDLQRVADMAALAGAQRMDDQCAQPNAAAAANARSNGFDPAAGGNTLA
LACGRWDTQSNAGPSYFNAAATPLNAVQVTATQSVPYFFLGPSRTVSATSTAKATNVD
QFTIGTTLASVQGGLVNNVLNALLGTNLGLSALSYQALASTQIKIGDLMAAANVLTVN
ELLATQVTAGQYAQLMLTALSRTQVVNANLQASVAALQAIAGAHLGGGTFKLGGQPGA
PGVFALGLSDTQAAADAKINVFDALMVAAEVAAAGKPAVDVATGLQLAGQGARLKLQV
IEPPTIVIGEAGTDPKTGAWRTQANNAQIRLYVSVDLGTTGLSPTGVLLPIAPLVSLV
QNLIQVDLSLPLTLQVATGSAWLQSTSCAASAAASRATLGVQPGLANLCIGDVPTDLP
AQQTFACNVPATLATLGVLSAPLLQVKSAVALPAVVPKASAATLTFNGVAGDADDYQT
TNSNAVGSVIANALSGAAQSLTGSNGLALYVLGVSVPVGTILNPVVSVLLNLLGPVLS
SLDQVVVPLLNLLGVQLGAATVHNLALTCGTAQTVY"
misc_feature 126125..126262
/locus_tag="BMA10229_A0124"
/note="Putative Flp pilus-assembly TadE/G-like; Region:
Tad; pfam13400"
/db_xref="CDD:205578"
misc_feature 126134..127852
/locus_tag="BMA10229_A0124"
/note="Predicted membrane protein [Function unknown];
Region: COG4655"
/db_xref="CDD:34274"
misc_feature 126248..126511
/locus_tag="BMA10229_A0124"
/note="Putative Tad-like Flp pilus-assembly; Region:
Tad_C; pfam09977"
/db_xref="CDD:204362"
gene 127875..129266
/locus_tag="BMA10229_A0125"
/db_xref="GeneID:4792886"
CDS 127875..129266
/locus_tag="BMA10229_A0125"
/note="identified by match to protein family HMM PF00158;
match to protein family HMM PF02954; match to protein
family HMM PF07728"
/codon_start=1
/transl_table=11
/product="sigma-54 dependent transcriptional regulator"
/protein_id="YP_001026133.1"
/db_xref="GI:124384729"
/db_xref="GeneID:4792886"
/translation="MRNTNAIEGLDLYVWEGKADIVDRVARCMSSFDVEVIRADNEEL
SAERTAMRPSLAIISVSMIESGAAFLRTWQAEIGMPVVWVGAARDHDPSLYPPEYSHI
LPLDFTCAELRGMISKLAVQLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNV
LLHGETGVGKERIAQLLHEKHSRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAV
GTHKGYFEQAAGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAA
SNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALFKSFVASIVGEDRLA
ALPELPYWLAEAVADSYFPGNVRELRNLAERVGVTVRQTGGWDTVRLQRLIAHARSAA
QPAPAESAPDVFVDRSKWDMTERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMRKY
QIFDEEPEARESE"
misc_feature 127929..129254
/locus_tag="BMA10229_A0125"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:32386"
misc_feature 128349..128777
/locus_tag="BMA10229_A0125"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 128364..128387
/locus_tag="BMA10229_A0125"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(128367..128390,128580..128582,128706..128708)
/locus_tag="BMA10229_A0125"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 128568..128585
/locus_tag="BMA10229_A0125"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 128763..128765
/locus_tag="BMA10229_A0125"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 129105..129224
/locus_tag="BMA10229_A0125"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene 129357..130070
/locus_tag="BMA10229_A0126"
/db_xref="GeneID:4793313"
CDS 129357..130070
/locus_tag="BMA10229_A0126"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026134.1"
/db_xref="GI:124385628"
/db_xref="GeneID:4793313"
/translation="MGRVFVAIAAAGGLCGAHAQALEGNGGAASPALTASGAAASPGV
SAPAVVNLSAPAGAPAAGASTEAGGKSTIDELQRQIQARELTEMRTTYNGSYGASLLL
NIQEGTYFVALFQQKAFWRVIRTASEARAEAVYRDFAKQSETLAVNELQAAKLESQKA
LTDRQIAVAQERASRLQADLSIAREQRAAVATRQKDKLDETVALREQKSERQDQLRKL
QQQVRSLQRQAEAGLPKVR"
misc_feature 129564..130067
/locus_tag="BMA10229_A0126"
/note="Protein of unknown function (DUF2968); Region:
DUF2968; pfam11180"
/db_xref="CDD:151622"
gene complement(130221..130898)
/locus_tag="BMA10229_A0127"
/db_xref="GeneID:4792382"
CDS complement(130221..130898)
/locus_tag="BMA10229_A0127"
/note="identified by match to protein family HMM PF01423;
match to protein family HMM TIGR02383"
/codon_start=1
/transl_table=11
/product="hfq protein"
/protein_id="YP_001026135.1"
/db_xref="GI:124385350"
/db_xref="GeneID:4792382"
/translation="MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQY
LVMLRTPVGLQGIYKRAISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPY
GSHGGSREPRGDGGGYGARESRGDGGYGSRESRGDGGYGSRESRGDGGYGSREPRGDG
GYGSREPRGDGGYGAREPREPREPRESYGAPQEGASTPSGTQERNGNGPVIVTRRRRS
LGPTDGQ"
misc_feature complement(130701..130877)
/locus_tag="BMA10229_A0127"
/note="bacterial Hfq-like; Region: Hfq; cd01716"
/db_xref="CDD:212463"
misc_feature complement(order(130701..130742,130764..130769,
130773..130781,130803..130817,130860..130862,
130869..130877))
/locus_tag="BMA10229_A0127"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:212463"
misc_feature complement(order(130752..130805,130809..130829))
/locus_tag="BMA10229_A0127"
/note="Sm1 motif; other site"
/db_xref="CDD:212463"
misc_feature complement(order(130701..130703,130707..130712,
130734..130736,130755..130757,130794..130808,
130818..130820))
/locus_tag="BMA10229_A0127"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:212463"
misc_feature complement(130704..130739)
/locus_tag="BMA10229_A0127"
/note="Sm2 motif; other site"
/db_xref="CDD:212463"
gene 131203..131475
/locus_tag="BMA10229_A0128"
/db_xref="GeneID:4792668"
CDS 131203..131475
/locus_tag="BMA10229_A0128"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026136.1"
/db_xref="GI:124383800"
/db_xref="GeneID:4792668"
/translation="MKKWLTITMLGVALLGAAGAATAGGVDLSIGVGVPVAPVYVAPQ
PVYVAPQPAVVGYPAYGWRGDDEDDDWKHYHKHWRKWHRHHDDDDD"
gene 131490..131663
/locus_tag="BMA10229_A0130"
/db_xref="GeneID:4791223"
CDS 131490..131663
/locus_tag="BMA10229_A0130"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026137.1"
/db_xref="GI:124385236"
/db_xref="GeneID:4791223"
/translation="MPRRRGPVAPPQRTPQRKKNAARAMKAARRFSSPPDGVAGAPVT
RVEHDATMTAQNL"
gene complement(131651..132661)
/locus_tag="BMA10229_A0129"
/db_xref="GeneID:4792735"
CDS complement(131651..132661)
/locus_tag="BMA10229_A0129"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026138.1"
/db_xref="GI:124384533"
/db_xref="GeneID:4792735"
/translation="MTTRFSIAFWEECMPHTLPLHPSSSSRTRFARRRLATASAALSL
SLSLMLGHGAAHAQVNAEASAAVESGAQEAALPAELAKVAKLPVEQQACWLRTAARQG
TLEKLDDATLTALFKSLDPQTVPDYVAAGPIGHPSYEFTMLRQERISGKWSDTPDHML
VKVTRSPLRVYAKWLPDGAHSGQEVIYDSSKRADEMYGHLGGLLGKVPMWTAVDGTLA
RAQSNHQVRDLGTEFVANLYLTEAKKYREAGALKPTHVEAKTVKGVRVVALTYETPGG
RPQFYAKKETLGLDLRQPYFRTVESYDNDGRVFEKIVFEKITPKSLDETAFDPKNPDY
KF"
misc_feature complement(131654..132238)
/locus_tag="BMA10229_A0129"
/note="Protein of unknown function (DUF1571); Region:
DUF1571; pfam07608"
/db_xref="CDD:148946"
gene complement(132682..134454)
/gene="fadD"
/locus_tag="BMA10229_A0131"
/db_xref="GeneID:4793477"
CDS complement(132682..134454)
/gene="fadD"
/locus_tag="BMA10229_A0131"
/EC_number="6.2.1.3"
/note="identified by match to protein family HMM PF00501"
/codon_start=1
/transl_table=11
/product="long-chain-fatty-acid--CoA ligase"
/protein_id="YP_001026139.1"
/db_xref="GI:124386397"
/db_xref="GeneID:4793477"
/translation="MTAPVAPAHAHTHAPNTDGIWYASYPKGVPHDIDVTRYESLAQY
FDECTTRYAQRVAFISAGARMTYAALARKAAAFASYLQSLGVKPGDRVAIMLPNTFQY
PVTLFGTLKAGAIVVNVNPLYTARELAHQLKDSGAQTIIVFENFAKTLQDALPETQIK
HVVVTALGDLLADGLNPKGRLINFVLKHVKKLVPAYRLPQAVRLRAALAAGAKKAPAP
VALKRDDLAFLQYTGGTTGVAKGAMLTHGNLIANLLQAKAWIEDQLTGDVETVLTPLP
LYHIYSLTVNAFIFLGLGGRNILIANPRDTKTMMKILRHETFTGITGINTLYNAFLDN
EEFRKRDFSKLKLAMAGGMAMQRAVAERFEQVTGCPIVEGYGLTECSPIVTMNPYDAH
EKRAFSGTIGLPAPSTIVRFRTEDGAWANVGEPGELCVHGPQVMRGYWQRPDETAKVI
DADGWLATGDIGVMDEQGFIRLIDRKKDMILVSGFNVYPNEIEDVLVSHPGIREAAAI
GIPDPVHGERIKVFVVPRDASLTVEDVLTHCRKNLTGYKMPKAVEFRDALPQTNVGKI
LRRALRDEELAKLANAPADPHAKH"
misc_feature complement(132709..134403)
/gene="fadD"
/locus_tag="BMA10229_A0131"
/note="long-chain-fatty-acid--CoA ligase; Validated;
Region: PRK08974"
/db_xref="CDD:236359"
misc_feature complement(132739..134334)
/gene="fadD"
/locus_tag="BMA10229_A0131"
/note="Prokaryotic long-chain fatty acid CoA synthetases
similar to Escherichia coli FadD; Region:
FC-FACS_FadD_like; cd05936"
/db_xref="CDD:213302"
misc_feature complement(order(133735..133740,133744..133761,
133768..133770))
/gene="fadD"
/locus_tag="BMA10229_A0131"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213302"
misc_feature complement(order(132760..132762,132997..132999,
133030..133032,133039..133041,133075..133077,
133321..133338,133399..133404,133759..133761))
/gene="fadD"
/locus_tag="BMA10229_A0131"
/note="putative AMP binding site [chemical binding]; other
site"
/db_xref="CDD:213302"
misc_feature complement(order(132817..132819,132997..133008,
133030..133032,133039..133041,133075..133077,
133321..133338,133399..133404,133465..133467,
133474..133479,133483..133485,133627..133632,
133759..133761))
/gene="fadD"
/locus_tag="BMA10229_A0131"
/note="putative active site [active]"
/db_xref="CDD:213302"
misc_feature complement(order(132817..132819,132835..132837,
133000..133008,133402..133404,133465..133467,
133474..133479,133630..133632))
/gene="fadD"
/locus_tag="BMA10229_A0131"
/note="putative CoA binding site [chemical binding]; other
site"
/db_xref="CDD:213302"
gene complement(134451..134564)
/locus_tag="BMA10229_A0132"
/db_xref="GeneID:4791707"
CDS complement(134451..134564)
/locus_tag="BMA10229_A0132"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026140.1"
/db_xref="GI:124383989"
/db_xref="GeneID:4791707"
/translation="MPAFSSFTPARASPGECARCPAGARAPAHTNDSGDKR"
gene complement(134639..135595)
/locus_tag="BMA10229_A0133"
/db_xref="GeneID:4791071"
CDS complement(134639..135595)
/locus_tag="BMA10229_A0133"
/note="identified by match to protein family HMM PF00440"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001026141.1"
/db_xref="GI:124386359"
/db_xref="GeneID:4791071"
/translation="MAVRQASRQSGGTKARILDAAEDLFIEHGFEAMSMRQITSRAAV
NLAAVNYHFGSKEALIHAMLSRRLDQLNEERLRILDRFDAQLGAHVTCEHVLGAMFIP
ALQASRDPQRGGRAFLRLIGRAYTDPSAFVRNFLTAHYASVAGRFFDAFQRALPNLPR
AELGWRLHYAIGALSGALAGAETESLIDEFTQGRTMNDVQMIARLSALIVAALKAPMP
DATQLTIFASVLDGAAASASATQPAEPVALALAPAAIVPAPACALTPAAPAPMPAPSA
VPPASVASASTAPAAAATPSAPCTDAFAAEPIGAIAHETHAS"
misc_feature complement(<135356..135595)
/locus_tag="BMA10229_A0133"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(135407..135547)
/locus_tag="BMA10229_A0133"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(135812..137038)
/locus_tag="BMA10229_A0134"
/db_xref="GeneID:4791669"
CDS complement(135812..137038)
/locus_tag="BMA10229_A0134"
/note="identified by match to protein family HMM PF00083;
match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily transporter
sialate:H(+) symporter"
/protein_id="YP_001026142.1"
/db_xref="GI:124383582"
/db_xref="GeneID:4791669"
/translation="MAMSWTREQRNVTIAAYLGWTLDAFDFFLMVFVLKDIAAEFNTK
IPAVAFAITLTLAARPIGALIFGRLADHFGRRPTLMINIACYSLLELASGFAPSLAAL
LVLRTLFGVAMGGEWGVGSALTMETVPPRARGAVSGLLQAGYPSGYLLASVVFGLLYP
YIGWRGMFMIGVLPALLVLYVRAKVPESPAWKQMEKRARPGLVATLKQNWKLSIYAVV
LMTAFNFFSHGTQDLYPTFLREQHHFDPHTVSWITIVLNIGAIVGGLTFGWLSERIGR
RRAIFIAAMIALPVLPLWAFSTGALALAAGAFLMQISVQGAWGVIPVHLNEISPDEIR
ATFPGFVYQLGNLLASGNATLQAQFAVDHGNNYGMALATVAGIVAVVICVLIVFSRER
RGIDMTQTAAMSPTSG"
misc_feature complement(135905..137023)
/locus_tag="BMA10229_A0134"
/note="putative sialic acid transporter; Region: 2A0112;
TIGR00891"
/db_xref="CDD:233172"
misc_feature complement(135878..137002)
/locus_tag="BMA10229_A0134"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(135992..135994,136001..136006,
136013..136018,136025..136030,136061..136063,
136070..136075,136085..136087,136094..136099,
136106..136108,136247..136249,136259..136261,
136268..136270,136280..136282,136292..136294,
136334..136336,136343..136345,136358..136360,
136367..136372,136379..136381,136595..136597,
136613..136618,136625..136630,136664..136666,
136673..136678,136685..136690,136697..136702,
136838..136843,136847..136852,136862..136864,
136871..136876,136883..136885,136934..136939,
136943..136951,136958..136960))
/locus_tag="BMA10229_A0134"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 137449..138003
/locus_tag="BMA10229_A0135"
/db_xref="GeneID:4793942"
CDS 137449..138003
/locus_tag="BMA10229_A0135"
/note="identified by match to protein family HMM PF00583"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_001026143.1"
/db_xref="GI:124384434"
/db_xref="GeneID:4793942"
/translation="MNPDAQAHSSLPTLETDRLWLRPRVLADLDACIEMDRDPDVTRH
IAGPWADPVEHRRFVEHRITRAYPPGLGYWSIFEKARPDRFVGWVLLIPDYVEGGRDV
EIGWRLVRASWGRGIASEAARRVVRHAFETVRLPRIVADIAAANSASLNVARKLGMRR
VGIVQDGIPYVRHRLERADLAARG"
misc_feature 137500..137925
/locus_tag="BMA10229_A0135"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:205482"
misc_feature 137695..137925
/locus_tag="BMA10229_A0135"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:201324"
gene 138147..138773
/locus_tag="BMA10229_A0136"
/db_xref="GeneID:4793560"
CDS 138147..138773
/locus_tag="BMA10229_A0136"
/note="identified by match to protein family HMM PF08857"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026144.1"
/db_xref="GI:124385023"
/db_xref="GeneID:4793560"
/translation="MTIGQDVHLIPAKLDALRPTQITVGYREVKAKRKHWKALGKKAR
KAAIESHWFPAVLGPGGDYFITDHHHLGLALLEEGVTEVKAMLLKDLSWLDETIFWRM
MEHNQWVHPFGANGARHDYDHLPTSLVGLKDDPYRSLAGELRAAGGYAKDATPFSEFL
WADFLRPRIALAQIRKEFAKALEAALGYAHTQEARYLPGWSGVIAAPR"
misc_feature 138168..138650
/locus_tag="BMA10229_A0136"
/note="Putative ParB-like nuclease; Region: ParBc_2;
pfam08857"
/db_xref="CDD:117424"
gene 138820..140532
/locus_tag="BMA10229_A0137"
/db_xref="GeneID:4793064"
CDS 138820..140532
/locus_tag="BMA10229_A0137"
/note="identified by match to protein family HMM PF00860;
match to protein family HMM PF00916; match to protein
family HMM PF01740"
/codon_start=1
/transl_table=11
/product="sulfate permease"
/protein_id="YP_001026145.1"
/db_xref="GI:124385946"
/db_xref="GeneID:4793064"
/translation="MDLRSKHIDAPPQHAAHFAPLDEPPAPRARRTALDALAGLSIAG
LLIPEAVAYAGLANLPPQAGLIALVVGLVVYAIAGSSRFAIVSATSSSAVVLAATVMS
EAGPGAAAQLMLAAALVATTGILFILAGAARLGGMSDFIARPVLRGFTFGLALTIVIK
QLPKMLDVPIHHGDTLRVALDLLLGIAGCNVRSAALGATALAILFALGRRTRVPATLV
VIVLGIAAGYWIDWHRYGIAVVGTIDLQNLAFGMPVLGRSGWMQTAEFGFALMLILYA
ESYGSIRNFALKHGDTVSPNRDLVALGCANLVSGLLHGMPVGAGYSATSANEAAGAQT
RMAGLFAAAVIALIAWLLLPQLARIPEPVLAAIVIFAVSHSLHPEVFRPYWTWHRDRI
VVIAALAAVIVLGVLHGLLAAIGVSLLLTLRQLSEPNVSVLGRLRGSHDFVDVSMHED
AKPIPGVLIVRPEAQLFFANAERVLTMARRLARDAQPPVHTVMLSLEESPDVDGTTIE
ALKTFGAECDARGWRLALVRLKPNVLRVLQRAADGGLRADALSELSVDESLQSLTAGE
LPRA"
misc_feature 138961..140526
/locus_tag="BMA10229_A0137"
/note="Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism];
Region: SUL1; COG0659"
/db_xref="CDD:223732"
misc_feature 139204..139935
/locus_tag="BMA10229_A0137"
/note="Sulfate transporter family; Region: Sulfate_transp;
pfam00916"
/db_xref="CDD:216188"
misc_feature 140161..140439
/locus_tag="BMA10229_A0137"
/note="Sulphate Transporter and Anti-Sigma factor
antagonist domain of SulP-like sulfate transporters, plays
a role in the function and regulation of the transport
activity, proposed general NTP binding function; Region:
STAS_SulP_like_sulfate_transporter; cd07042"
/db_xref="CDD:132913"
gene 140553..140714
/locus_tag="BMA10229_A0138"
/db_xref="GeneID:4792161"
CDS 140553..140714
/locus_tag="BMA10229_A0138"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026146.1"
/db_xref="GI:124386472"
/db_xref="GeneID:4792161"
/translation="MRRCVTLDVGCRMSDVGCPMSDVRCCRRAVDRVPGARPPYRRAA
SFRFSHRRP"
gene complement(140838..142424)
/locus_tag="BMA10229_A0139"
/db_xref="GeneID:4791602"
CDS complement(140838..142424)
/locus_tag="BMA10229_A0139"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026147.1"
/db_xref="GI:124385616"
/db_xref="GeneID:4791602"
/translation="MASFKSSLRRGLRVSGCALWLALSKLDAAHAAAGPDASPDAWPS
AALSDRAAVEVDASQLLPTPQLVRWQVDLDRRGLRSTGSPAHERYIDVLRRRLARAGV
QQLHTEATTLAHWAVRHWRLDVADGAPRERIDVAGYLPYSGDTGRDGIVAPIRYLAAG
QTPDADVAGKIAVVEWPALPLTGAFFRERALRVFDPDNAFAPSAPYVRTSFMLGTLTA
MLDRLQAAGAAGVVMIADTSSAEATRLYAPYDGRLRRVPGLFVDRATGAKLASLAERR
ATLRLSLDAGVERVHTRNLIGIIPGMSDELTVVNSHTDGTNGIEDNGPNAIVAIAQYL
SRLPRAALPRTVMILLSSGHFAGGVGAEDFIARHARDGLVARIACVVTIEHLGAQEWL
PSEQGALAPTGRAEPTALFMPAVPALVDAADALVRRANAAPAFVMPPLNPNGDGSAND
ALWPGEGQYFWGRARVPTINLITGPTYLLNYGVSTAEKIDYARLRREIAATTQTLLDL
SRVPFDALRAVPPRTRAAAP"
misc_feature complement(<141321..141575)
/locus_tag="BMA10229_A0139"
/note="Zinc peptidases M18, M20, M28, and M42; Region:
Zinc_peptidase_like; cl14876"
/db_xref="CDD:213133"
misc_feature complement(order(141360..141365,141462..141464,
141489..141491))
/locus_tag="BMA10229_A0139"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193495"
gene complement(142651..144138)
/locus_tag="BMA10229_A0140"
/db_xref="GeneID:4792370"
CDS complement(142651..144138)
/locus_tag="BMA10229_A0140"
/note="identified by match to protein family HMM PF04185"
/codon_start=1
/transl_table=11
/product="phosphoesterase"
/protein_id="YP_001026148.1"
/db_xref="GI:124386553"
/db_xref="GeneID:4792370"
/translation="MANSLSRIEHIVHLMLENRSFDQMLGFLYTDDGNRSPTGQPFDG
LTGNESNPDDLGRPVGVYRIRATDPHPYLMPGADPGEGFQNTNYQLFCDDHPAPGAVP
TNQGFVVNFKSAIATDQSRHDKDALPGTTPEQIMGMYTPELLPVLSGLAKGYAVCDRW
FASAPTMTMPNRAFALAATSQGHLDDHVKIFTCPSIFGRLSDQGVDWAIFGYNRDPLT
RHDFPDTQNADDSHFGHFRDFQARAASGTLPAFTFLEPSWDASGNSQHPNYDVAAGEQ
LIHDVYYALRNGPGWNSTLFIVTYDEHGGNYDHVAPPSGATPPGDGTVGEFGFDFTRF
GVRVPAVLVSPLIAAGTVFRSAAGTIDHTSVLKTIGERFGTAPLTARDRAAPSLGDAL
TLASPRAASDDPLAGVTVPVSRVSHPNAAMPSKLDKLQAARIAALPLRNEKGYYEEAD
TPLASSAELSNFIRDRGAAWSQHRQRQQQRRQQQQRQQPRSKPRR"
misc_feature complement(143017..144117)
/locus_tag="BMA10229_A0140"
/note="Phosphoesterase family; Region: Phosphoesterase;
pfam04185"
/db_xref="CDD:146693"
gene 144820..146385
/locus_tag="BMA10229_A0141"
/db_xref="GeneID:4791502"
CDS 144820..146385
/locus_tag="BMA10229_A0141"
/note="identified by match to protein family HMM PF00015;
match to protein family HMM PF00672"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis domain-containing
protein"
/protein_id="YP_001026149.1"
/db_xref="GI:124383801"
/db_xref="GeneID:4791502"
/translation="MSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEILAIRSG
KAPRPLDYDRIYWDFRAADEPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSND
LVKTETVAMNLVKGLTPDDAGHFTKQGPPDLEKARALMFDANYHRFKAKIMHPIDDFL
KLLDARTEGAIARAQASAQTWKIISAAVAIGILAFFALMLHIMFKRVLAGLEAAASTA
SRVAAGDLTSHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTIATASH
EIMAGNNDLSARTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKG
SVSVEQLVTTVNAISTNSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAV
VASEVRSLAQRSSSAAKEIKDLIETSIDTVRDGVSKADEVGQHIVEVKQAIRRVADLV
GEITAASEEQTRGIEQVDAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASI
FKLPGRASLFAHA"
misc_feature 145687..146253
/locus_tag="BMA10229_A0141"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(145711..145716,145723..145728,145735..145737,
145744..145749,145753..145758,145765..145767,
145774..145779,145786..145788,145795..145800,
145807..145812,145819..145821,145828..145833,
145837..145842,145852..145854,145858..145863,
145870..145872,145879..145884,145891..145896,
145903..145905,145912..145914,145921..145926,
145933..145935,145945..145947,145954..145956,
145975..145977,145987..145989,145996..145998,
146005..146010,146017..146019,146026..146031,
146038..146043,146047..146052,146059..146064,
146101..146106,146113..146115,146122..146127,
146134..146136,146143..146148,146152..146157,
146164..146169,146176..146178,146185..146190,
146197..146199,146206..146211,146215..146220,
146227..146232,146236..146241,146248..146250)
/locus_tag="BMA10229_A0141"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 145921..146022
/locus_tag="BMA10229_A0141"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(146566..146652)
/locus_tag="BMA10229_A0142"
/db_xref="GeneID:4791224"
tRNA complement(146566..146652)
/locus_tag="BMA10229_A0142"
/product="tRNA-Leu"
/db_xref="GeneID:4791224"
gene 146838..148319
/locus_tag="BMA10229_A0143"
/db_xref="GeneID:4791360"
CDS 146838..148319
/locus_tag="BMA10229_A0143"
/note="identified by match to protein family HMM PF01609"
/codon_start=1
/transl_table=11
/product="ISBma2, transposase"
/protein_id="YP_001026150.1"
/db_xref="GI:124384779"
/db_xref="GeneID:4791360"
/translation="MFFNGVMLKTPMPTQHELEMVTLEELVPKDHLLRQIDAAVDFEF
IRAKVAHLYCADNGRPALDPVVMFKLLFIGYLFGVRSERQLMREVQVNVAYRWFARFR
LTDKVPDASTFSQNRRRRFTDTTVYQEIFDEIVRQAIKRGLVDGRVLYTDSTHLKANA
NKGKFDVVKLEQTPAAYTEALNAAVDADRAAHGRKPLDRDDDEPPSSKDTKLSRTDPD
SGYMVRDDKPKGFFYLDHRTVDAKHAIITDTHVTPASVHDSQPYLDRLDRQRERFEFK
VEAVGLDAGYFTPAVCQGLEERGIAGVMGYRTPNHKPGMFYKRQFKYDAYRNEYVCPQ
GQALPYSTTNRLGYREYKSNAQICGRCPVRSQCTNSAIAVKVVTRHVWERAKERVDAR
RLTEWGQRIYARRKQTVERSFADAKQLHGHRYARMRGLRKVAEQCLLAAAAQNIKKIA
MLLARKRKKGPAGPDWRFVRMLLRLVSGLRCSFDYPLAANPQS"
misc_feature 147009..147242
/locus_tag="BMA10229_A0143"
/note="Transposase domain (DUF772); Region: DUF772;
pfam05598"
/db_xref="CDD:203284"
misc_feature 147543..148175
/locus_tag="BMA10229_A0143"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
misc_feature 147828..148187
/locus_tag="BMA10229_A0143"
/note="Transposase DDE domain; Region: DDE_Tnp_1_6;
pfam13751"
/db_xref="CDD:205925"
gene complement(148401..148487)
/locus_tag="BMA10229_A0144"
/db_xref="GeneID:4793363"
tRNA complement(148401..148487)
/locus_tag="BMA10229_A0144"
/product="tRNA-Leu"
/db_xref="GeneID:4793363"
gene 148634..151150
/gene="vacB"
/locus_tag="BMA10229_A0145"
/db_xref="GeneID:4791350"
CDS 148634..151150
/gene="vacB"
/locus_tag="BMA10229_A0145"
/EC_number="3.1.-.-"
/note="identified by match to protein family HMM PF00575;
match to protein family HMM PF00773; match to protein
family HMM PF08206; match to protein family HMM TIGR00358;
match to protein family HMM TIGR02063"
/codon_start=1
/transl_table=11
/product="ribonuclease R"
/protein_id="YP_001026151.1"
/db_xref="GI:124385732"
/db_xref="GeneID:4791350"
/translation="MSGAPVRLRLPRSRKPNATRKIIDKPLSKYPYPIPSREEILGVL
RTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLDKRGHYQLTHPSNFVAG
RVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLARIVGYDRRGRPEGHVVEVT
ERANKRVIGRLLNENGALIVAPEDKRISHDILVTQNAKKAKVGQVVVVELTDFPSRHS
QPLGRVCEVLGDIDDPGMEIEIAVRKYGVPHEFGAQALGEAAALPDKVRPADLRYRVD
LRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRLIVAIADVSHYVQPGSPLDADAV
ERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGDIKAYQFYPAVI
HSAARLTYTEVAAVLSNTKGPEAARRAELMPHLQHLYGVYKALFVARQKRGAIDFDTT
ETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKHPGLYRVHAGPT
PEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKSPEGVELNTALS
PRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEAWLKCYFMRDKL
GEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYDEVKNELRGERTGIRYR
LSDRVRVQVSRVDLDARKIDFRLVRETPVKAPRPASAVAAEAGAGGPRVRALPPAEGA
ARRKKAASAPSAAVKEARAARKKGAASKPAAKKARSRKKY"
misc_feature 148733..150925
/gene="vacB"
/locus_tag="BMA10229_A0145"
/note="ribonuclease R; Region: RNase_R; TIGR02063"
/db_xref="CDD:200153"
misc_feature 148937..149110
/gene="vacB"
/locus_tag="BMA10229_A0145"
/note="Ribonuclease B OB domain; Region: OB_RNB;
pfam08206"
/db_xref="CDD:203875"
misc_feature 149453..150445
/gene="vacB"
/locus_tag="BMA10229_A0145"
/note="RNB domain; Region: RNB; pfam00773"
/db_xref="CDD:201436"
misc_feature <150494..150700
/gene="vacB"
/locus_tag="BMA10229_A0145"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:213126"
misc_feature 150677..150925
/gene="vacB"
/locus_tag="BMA10229_A0145"
/note="S1_RNase_R: RNase R C-terminal S1 domain. RNase R
is a processive 3' to 5' exoribonuclease, which is a
homolog of RNase II. RNase R degrades RNA with secondary
structure having a 3' overhang of at least 7 nucleotides.
RNase R and PNPase play an important...; Region:
S1_RNase_R; cd04471"
/db_xref="CDD:88436"
misc_feature order(150704..150706,150728..150730,150761..150763,
150767..150769)
/gene="vacB"
/locus_tag="BMA10229_A0145"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88436"
gene 151282..152025
/locus_tag="BMA10229_A0146"
/db_xref="GeneID:4792306"
CDS 151282..152025
/locus_tag="BMA10229_A0146"
/note="identified by match to protein family HMM PF00588;
match to protein family HMM PF08032; match to protein
family HMM TIGR00186"
/codon_start=1
/transl_table=11
/product="RNA methyltransferase"
/protein_id="YP_001026152.1"
/db_xref="GI:124385837"
/db_xref="GeneID:4792306"
/translation="MSRLKVLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQA
AKEAGVRLIAADETRLWGLAHTERHQGVVARVEDLPLAQNLAELLDGIAGPALLLVLD
GVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVASGAADTVPYITVTNLAR
ALRELKDAGVWVIGTSDDATASVYDTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIP
MAGSVESLNVSVASGVCLYEAVRQRGAKK"
misc_feature 151297..151521
/locus_tag="BMA10229_A0146"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; pfam08032"
/db_xref="CDD:203842"
misc_feature 151300..152016
/locus_tag="BMA10229_A0146"
/note="23S rRNA (guanosine-2'-O-)-methyltransferase;
Provisional; Region: PRK11181"
/db_xref="CDD:183021"
misc_feature 151570..151992
/locus_tag="BMA10229_A0146"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:216010"
gene 152037..152336
/locus_tag="BMA10229_A0147"
/db_xref="GeneID:4792232"
CDS 152037..152336
/locus_tag="BMA10229_A0147"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026153.1"
/db_xref="GI:124383470"
/db_xref="GeneID:4792232"
/translation="MRSFAAGFAGAVRGAAFAMPGGRSAAAFAVRRASACFYSLFTPS
MRALARRDTCWAARTGRAAPAPLACTPRSAFARARRAAAFAKETRNAQECERRSV"
gene 152399..153298
/locus_tag="BMA10229_A0148"
/db_xref="GeneID:4793830"
CDS 152399..153298
/locus_tag="BMA10229_A0148"
/note="identified by match to protein family HMM PF01510"
/codon_start=1
/transl_table=11
/product="N-acetylmuramoyl-L-alanine amidase"
/protein_id="YP_001026154.1"
/db_xref="GI:124384334"
/db_xref="GeneID:4793830"
/translation="MKFPLRHTLLASFSMLAAACTTPTLVNRGDYYADTSLPARSVDS
RIRFLVMHYTEIGEAPSLRVLTQENVSAHYVVPDAPRTERGAPVVYQLVPESERAWHA
GVSAWQGATELNGVSIGIENVNRGPIDTPHGRMWAPYPPAQVDAIVRLAKDIVARYRI
PPTRVVGHSDIAPQRKIDPGPLFPWRALAKAGVGAWPDDETVAARLAGRPPKSLVDVR
ELQLKLARYGYDVATDGVLDDRTRRVFSAFQMHFRPTDYAGNPDAETDAIAQALLDKY
MPSQPAPERDAAALDAASGVAAQ"
misc_feature 152444..153223
/locus_tag="BMA10229_A0148"
/note="N-acetyl-anhydromuramyl-L-alanine amidase [Cell
envelope biogenesis, outer membrane]; Region: ampD;
COG3023"
/db_xref="CDD:32839"
misc_feature 152531..152944
/locus_tag="BMA10229_A0148"
/note="Peptidoglycan recognition proteins (PGRPs) are
pattern recognition receptors that bind, and in certain
cases, hydrolyze peptidoglycans (PGNs) of bacterial cell
walls. PGRPs have been divided into three classes: short
PGRPs (PGRP-S), that are small (20...; Region: PGRP;
cd06583"
/db_xref="CDD:133475"
misc_feature order(152552..152554,152612..152614,152900..152902,
152924..152926,152930..152932)
/locus_tag="BMA10229_A0148"
/note="amidase catalytic site [active]"
/db_xref="CDD:133475"
misc_feature order(152552..152554,152900..152902,152930..152932)
/locus_tag="BMA10229_A0148"
/note="Zn binding residues [ion binding]; other site"
/db_xref="CDD:133475"
misc_feature order(152555..152560,152612..152614,152675..152677,
152696..152701,152738..152740,152900..152902,
152912..152914,152924..152932)
/locus_tag="BMA10229_A0148"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133475"
misc_feature 153044..153193
/locus_tag="BMA10229_A0148"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:201815"
gene 153567..154262
/gene="rpiA"
/locus_tag="BMA10229_A0149"
/db_xref="GeneID:4793741"
CDS 153567..154262
/gene="rpiA"
/locus_tag="BMA10229_A0149"
/EC_number="5.3.1.6"
/note="Catalyzes D-ribose 5-phosphate --> D-ribulose
5-phosphate in the nonoxidative branch of the pentose
phosphate pathway"
/codon_start=1
/transl_table=11
/product="ribose-5-phosphate isomerase A"
/protein_id="YP_001026155.1"
/db_xref="GI:124385360"
/db_xref="GeneID:4793741"
/translation="MTQDELKRLVGEAAARYVTENVPQGAVIGVGTGSTANCFIDALA
AVKDRYRGAVSSSVATTERLKSHGIKVFDLNEIESLQVYVDGADEIDGSGAMIKGGGG
ALTREKIVASVAETFVCIADASKRVAVLGQFPLPVEVVPMARTAIGRRLAALGGVPVL
RVKQDGAPYVTDNGNEILDVKGLRIDDPRALEAAINGWPGVVTVGLFAQRGADLCLLG
TERGVETLRYAAH"
misc_feature 153582..154223
/gene="rpiA"
/locus_tag="BMA10229_A0149"
/note="RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first step
of the non-oxidative branch of the pentose phosphate
pathway. This reaction leads to the...; Region: RPI_A;
cd01398"
/db_xref="CDD:238692"
misc_feature order(153660..153662,153738..153740,153747..153752,
153777..153779,153783..153785,153864..153869,
154047..154052,154074..154076,154080..154082,
154092..154094)
/gene="rpiA"
/locus_tag="BMA10229_A0149"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:238692"
misc_feature order(153660..153662,153666..153671,153819..153824,
153828..153830,153858..153869,153885..153887,
153939..153941)
/gene="rpiA"
/locus_tag="BMA10229_A0149"
/note="active site"
/db_xref="CDD:238692"
misc_feature order(153786..153788,153798..153800,153882..153884,
153903..153905,153987..153992,153996..154004,
154011..154013,154152..154157,154170..154172)
/gene="rpiA"
/locus_tag="BMA10229_A0149"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238692"
gene 154600..155313
/locus_tag="BMA10229_A0150"
/db_xref="GeneID:4792636"
CDS 154600..155313
/locus_tag="BMA10229_A0150"
/note="identified by match to protein family HMM PF00392;
match to protein family HMM PF07729"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_001026156.1"
/db_xref="GI:124385481"
/db_xref="GeneID:4792636"
/translation="MEQGKDRSLVSKVMDGLVTGIVEDKYGGVLPPQDVLSKEFDVSR
TVMREALSMLLARDMLDVRPKVGTRVRPMSHWRMIDEDVVNWRFRAKPDRQFIRDVIE
FRTLIEPRATAQAASRATTAEIAGIREAYELFKLAEPGTPAYDEADELLHTRIVHASG
NQFFQQMAAIIRGALRVVNPRMSQRDDIRALALKSHGRVVDAIERRDARDAEAAALEL
IDYTAEEMRDFAVDMPERN"
misc_feature 154600..>155127
/locus_tag="BMA10229_A0150"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:225097"
misc_feature 154621..154812
/locus_tag="BMA10229_A0150"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(154621..154623,154627..154629,154690..154692,
154696..154701,154723..154737,154741..154746,
154753..154755,154783..154788,154792..154803)
/locus_tag="BMA10229_A0150"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 154894..>155169
/locus_tag="BMA10229_A0150"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:214892"
gene 155413..156396
/locus_tag="BMA10229_A0151"
/db_xref="GeneID:4792594"
CDS 155413..156396
/locus_tag="BMA10229_A0151"
/note="identified by match to protein family HMM PF01118;
match to protein family HMM PF01408"
/codon_start=1
/transl_table=11
/product="Gfo/Idh/MocA family oxidoreductase"
/protein_id="YP_001026157.1"
/db_xref="GI:124384624"
/db_xref="GeneID:4792594"
/translation="MTDHQPTPIRFGIVGAGSIARRFAHSIAHVRGAELSRIWARRAD
AAAAFCAAHGGAPCDSVDALLASDIDAVYIATLNDSHAHYARTALAAGKAVLCEKPAT
VNARELETVLDAAHAAKRLFMEAMKPPFYPLYRKLRAHLERDPIGEIALVRAGCASSR
VPADHPVYRFEQAGGALLDIGVYEMFLAVDWLGAPLDVQTLGRVGATGVDVFASVNAR
HARGVSQLFCGLDVMGRGDALLAAPGGYVTIHENWWNPARATIRYADGRVVELDEPFD
GGGLNYEIAHFCELLRAGELESPVMTHDHSRRMIAMTDAARAALGVRYPMD"
misc_feature 155434..156369
/locus_tag="BMA10229_A0151"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:31017"
misc_feature 155437..155790
/locus_tag="BMA10229_A0151"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
gene complement(156591..157313)
/locus_tag="BMA10229_A0152"
/db_xref="GeneID:4793389"
CDS complement(156591..157313)
/locus_tag="BMA10229_A0152"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfB"
/protein_id="YP_001026158.1"
/db_xref="GI:124383618"
/db_xref="GeneID:4793389"
/translation="MLAARLVKLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREA
GLAVRRRRKRHGVMIEREQLALPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEA
VDIVVDHGISGLYVARALDRAARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLI
QAGKPTQNAYIESFNGKFRDECLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLA
PSEFAAKHRATADAPAAFQELV"
misc_feature complement(157152..157310)
/locus_tag="BMA10229_A0152"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature complement(156621..157280)
/locus_tag="BMA10229_A0152"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: Tra5;
COG2801"
/db_xref="CDD:32633"
misc_feature complement(156768..157106)
/locus_tag="BMA10229_A0152"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature complement(156657..156857)
/locus_tag="BMA10229_A0152"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(157993..160365)
/locus_tag="BMA10229_A0153"
/db_xref="GeneID:4793978"
CDS complement(157993..160365)
/locus_tag="BMA10229_A0153"
/note="identified by match to protein family HMM PF01804"
/codon_start=1
/transl_table=11
/product="penicillin amidase"
/protein_id="YP_001026159.1"
/db_xref="GI:124386477"
/db_xref="GeneID:4793978"
/translation="MASRTNRLPRWLKILPGVILLGALLVAAGAALFLRASLPRLDGD
VRAPTLGGPMTIERDAAGVPTVAARDRFDAAYGIGYLHAQDRFFQMDYLRRTGAGELA
ELLGPAALDFDREHRLFRFRARAAAAFAQLPPDERRLLERYTQGVNDGLAALRARPFE
YALLGEPPARWRPEDSLLVIWAMYFQVQGTLASRDIARNWLTAHATQQQRAFLLPSSS
GFDAPLDAPRIDEAPAPLPDAAPDWFRAAGDGAAKRASLDFRSSVGSNNWAIAGSRSA
RGAAIVGDDMHLVLGLPNTWYRAAFTYPGGAAPVRRAVSVTLAGLPAIVAGSNGHVAW
GLTVGYADCLDLVPLERDGDDSRAFRMSGARQIARQYVESIRVRGGASVSLTVLETTV
GPVREIGGRPYAVHWVAQSPGAVNLGLARLADAVDVDGAMRVANTLGIPAENIVVGDR
AGRIGWTIAGALPDRRAPRGGEGAAWRSLLPPDAYPRVVDPSGGQLWTANSRQLAGDA
YRLIGDGGTDLGARATQLRDGLTALGRTDEQAAYRIDLDDRALFIAQWRDRALRVLDD
AALAGHPSRAEFRRLLEHGWTGRASVDSVGYTLARGFLYRLYDVTFDGLNARLKQVDA
GADYELANLRWPAVVARLLDAQPPGWLPAGASSWRDVQLIAIDRTIAALTADGAPLAR
ASWGARNTLRIAHPFAGSLPLLGGWLTAPAAQMPGDSHMPRVAAPDFGQSERMVVSPG
HEEFGIFNMPGGQSGHPLSPFFLAGHDAWVRAEPTPFLPGVARHTLRFAP"
misc_feature complement(158035..160248)
/locus_tag="BMA10229_A0153"
/note="Protein related to penicillin acylase [General
function prediction only]; Region: COG2366"
/db_xref="CDD:32513"
misc_feature complement(<160096..160200)
/locus_tag="BMA10229_A0153"
/note="The Ntn hydrolases (N-terminal nucleophile) are a
diverse superfamily of of enzymes that are activated
autocatalytically via an N-terminally lcated nucleophilic
amino acid. N-terminal nucleophile (NTN-) hydrolase
superfamily, which contains a...; Region: Ntn_hydrolase;
cl00467"
/db_xref="CDD:212223"
misc_feature complement(158710..159573)
/locus_tag="BMA10229_A0153"
/note="Penicillin G acylase (PGA) belongs to a family of
beta-lactam acylases that includes cephalosporin acylase
(CA) and aculeacin A acylase. PGA and CA are crucial for
the production of backbone chemicals like
6-aminopenicillanic acid and...; Region: Ntn_PGA_like;
cd03747"
/db_xref="CDD:73357"
misc_feature complement(order(158866..158868,159037..159039,
159109..159111,159346..159348,159352..159354,
159388..159390,159502..159504,159571..159573))
/locus_tag="BMA10229_A0153"
/note="active site"
/db_xref="CDD:73357"
gene complement(160490..161665)
/locus_tag="BMA10229_A0154"
/note="carbamoyltransferase, truncation; identified by
match to protein family HMM PF02543"
/pseudo
/db_xref="GeneID:4791607"
gene 161753..162016
/locus_tag="BMA10229_A0155"
/db_xref="GeneID:4792463"
CDS 161753..162016
/locus_tag="BMA10229_A0155"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfA"
/protein_id="YP_001026160.1"
/db_xref="GI:124385063"
/db_xref="GeneID:4792463"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLAEAMLDMEALKVVVKGKP"
misc_feature 161756..161953
/locus_tag="BMA10229_A0155"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 162040..162873
/locus_tag="BMA10229_A0156"
/db_xref="GeneID:4792924"
CDS 162040..162873
/locus_tag="BMA10229_A0156"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfB"
/protein_id="YP_001026161.1"
/db_xref="GI:124384067"
/db_xref="GeneID:4792924"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQGYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature 162097..162813
/locus_tag="BMA10229_A0156"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature 162142..162312
/locus_tag="BMA10229_A0156"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature 162358..162696
/locus_tag="BMA10229_A0156"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 162607..162807
/locus_tag="BMA10229_A0156"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene 162895..164454
/locus_tag="BMA10229_A0157"
/db_xref="GeneID:4790968"
CDS 162895..164454
/locus_tag="BMA10229_A0157"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026162.1"
/db_xref="GI:124383608"
/db_xref="GeneID:4790968"
/translation="MALSKGAGHHGTLRTTLIAATVAAMLSLSACGGSGTISKGLDGS
GSGSGGGNAISTTGGSGSGGSGGSGGSGSGGSGSSGSTGGLSGGGGSTSGGTSTSSSI
NALGTIAGNTGGIISGAGSTVSGLGTVVGSQTLPGVNPQTTQALGGIVQDLGGAVSAL
GSGVTSGIGQLGSSTNPIGTTVASTGGVVSQLGGAVTQTGNLVTSLGTGPLAPLAPLT
SPLGGAVSTLGNTITAGGTTLTTALSTGPVQQLTQTVSSAITPITSMVTGTTQTVGNV
TGLGAPVNTLLGTIGGGLNQAGALISKTGNNPVTTGLGQTVSATGNTITSVGGLLTGG
SGATNPLAPITAAVGGLTGTLSGVSGATSGTPLAPLTNVVSTVTGALSGATGSATSTS
PLAPITGLVSTVTGALSGATGGATGSTSPLAPVTGLVSTVTGALSGATGGTTSTSPLA
PVTNLVSTATGALGGATAAPATSTTTSATNPVASLTAPLTGTSSGTSGATNLLAPVTS
LVGGLLGGIKK"
gene 164504..165769
/locus_tag="BMA10229_A0158"
/db_xref="GeneID:4793968"
CDS 164504..165769
/locus_tag="BMA10229_A0158"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026163.1"
/db_xref="GI:124385984"
/db_xref="GeneID:4793968"
/translation="MTQQRFAPSFALAAWRVPLTALATACVLAACGGSDVTAPPSAGG
GTSGTSGTSGTSGTSGTSGTSGTAGTSGVVNTLGKTATDLGNTISSTSVPGLGSGVTQ
GVGATVGSTGGIINAAADALSNGLGQTGSTQNPVGTTVAGLGNVVSATSNTVQGLSQT
VQALGTGPLAPLSPVTTPVAGALATAANGVNAAGTMLGNALSTGPVQQVTQPISSALT
PLVITAGQVTQTVGTTTGVGQPVSGLLQQVGGAISSAGTQIAGTSPSQPLVGDVGQLV
SAVGNTVTNAGGLVNPAAPNGAAPIPGLITSVVGGSTATVATGSSSGSTLGSPLNGLL
SSLGGGALPSGPLGGSAVSGGASNPLAPITSLASGGTGASTNPLAPVTGLLNTVTGTL
SGATSSTGGSTGLLAPVTGSLGTLGSFGK"
gene 165944..167599
/locus_tag="BMA10229_A0159"
/db_xref="GeneID:4792017"
CDS 165944..167599
/locus_tag="BMA10229_A0159"
/note="identified by match to protein family HMM PF08479"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026164.1"
/db_xref="GI:124385425"
/db_xref="GeneID:4792017"
/translation="MLLLALVAAAGAAHAQSRSGGNPLEALPQINTPQKPSVTVQVAP
QEVQVQALLARHLTPSSFQVEGVKSIPFEEISQRFTPLVGKDITIGQLIETANGVTKL
YQERGYALSFAFVPAQTFEGGVVRVTVVEGYVANLKITGRPGAMEPKVRAIAAHIMAD
RPLRRATFERYVNTFGLLPGVTVKANVPPPQNTDGATTLELNVDRKPFNVSASLNTNN
PGLQGLFTVTENGLTSLGEQMSISALFPKGPNNQTYVSFNGAVPIGSNGLVTRLDASH
YRGNPSVDQTVLPNVQRTVINDKLGLSASYPLMLSNQRSLLGTVSGYASHSEDRYQNQ
STGATIGMRSQVRVLQMQFDYTSVQPKQVQKLSFNVAKAFDILGASKSGFTNLPGVIA
TNPASTTFVRTGATFVQTNEWPFKIGSTVQLTGQYSPDSLPSTEQISFGAQRFALGYQ
PGETSGDSGWGASLELNRAFAPGFTYLKNITPYIVYDMARVYLHSGTPVPRRLSSAGF
GVRLTDSRFYNLDVSIAKPVGDAPIESASRSPRVNASFSYQLY"
misc_feature 166112..166306
/locus_tag="BMA10229_A0159"
/note="POTRA domain, ShlB-type; Region: POTRA_2;
pfam08479"
/db_xref="CDD:117056"
misc_feature 166127..167593
/locus_tag="BMA10229_A0159"
/note="Hemolysin activation/secretion protein
[Intracellular trafficking and secretion]; Region: FhaC;
COG2831"
/db_xref="CDD:32659"
misc_feature <166985..167425
/locus_tag="BMA10229_A0159"
/note="Surface antigen; Region: Bac_surface_Ag; cl03097"
/db_xref="CDD:155280"
gene 167596..167808
/locus_tag="BMA10229_A0160"
/db_xref="GeneID:4792731"
CDS 167596..167808
/locus_tag="BMA10229_A0160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026165.1"
/db_xref="GI:124384445"
/db_xref="GeneID:4792731"
/translation="MTLARPARTPPARSRIAARRPTGRARLHFFSSPRRLAASIRSTC
IKRRARIHVFCAQLACIAVRRRRPAS"
gene 167843..168304
/locus_tag="BMA10229_A0161"
/db_xref="GeneID:4793571"
CDS 167843..168304
/locus_tag="BMA10229_A0161"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026166.1"
/db_xref="GI:124386265"
/db_xref="GeneID:4793571"
/translation="MFQMTRSLRSITVAGALLVCAASAFAQADSPVGMWQTIDDHTGK
PKALVQISADSNGELSGKVVKGLGENDTPDRRCTACTDERKDQLIKGMTIIKAMKKDG
EGWDGGNILDPENGKVYKCKMKLEDGGQKLVVRGYIGVSLLGRSQTWMRSQ"
misc_feature 167939..168295
/locus_tag="BMA10229_A0161"
/note="Uncharacterized protein conserved in bacteria
(DUF2147); Region: DUF2147; pfam09917"
/db_xref="CDD:204338"
gene complement(168541..168951)
/locus_tag="BMA10229_A0162"
/db_xref="GeneID:4791756"
CDS complement(168541..168951)
/locus_tag="BMA10229_A0162"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026167.1"
/db_xref="GI:124384384"
/db_xref="GeneID:4791756"
/translation="MTPYRDITDEEWQRVAPLLPELRPRKELRGRPLADTRAVLNGVL
WVIYSGANWSAMPRRFPAYQTCHRRFKAWHESGALKRVLIELFGTQSDDLCELMAMRM
RTHARSKAAQARSEAASTTSSPVPRHDHTLEHVV"
misc_feature complement(168703..168933)
/locus_tag="BMA10229_A0162"
/note="Putative transposase of IS4/5 family (DUF4096);
Region: DUF4096; pfam13340"
/db_xref="CDD:205520"
gene complement(169146..170246)
/locus_tag="BMA10229_A0163"
/db_xref="GeneID:4793650"
CDS complement(169146..170246)
/locus_tag="BMA10229_A0163"
/note="identified by match to protein family HMM PF03969"
/codon_start=1
/transl_table=11
/product="ATPase, AFG1 type"
/protein_id="YP_001026168.1"
/db_xref="GI:124384368"
/db_xref="GeneID:4793650"
/translation="MMNVTEYYEHELKTRGYQSDAAQRAAVERLQRCYGEWVAYKARR
SNAFKKLVVRPDLPRGVYMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRE
LEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMT
SNYDPDDLYPDGLHRDRMLPAIALLKERLDVLNVDAGVDYRQRTLTQVRMYHTPLGAD
ADRELRHAFAQLAAVPDESPILHIEKREIKALRRADGVVWFDFATLCGGPRSQNDYLE
LASRFHAIVLSDVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSAAVPADDLYVEGPM
ANEFSRTVSRIVEMQSKEYIEAPRRLIDTSLT"
misc_feature complement(169170..170243)
/locus_tag="BMA10229_A0163"
/note="Predicted ATPase [General function prediction
only]; Region: COG1485"
/db_xref="CDD:31674"
misc_feature complement(169743..170054)
/locus_tag="BMA10229_A0163"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(170031..170054)
/locus_tag="BMA10229_A0163"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(169758..169760,169854..169859,
169911..169913,170028..170036,170040..170045))
/locus_tag="BMA10229_A0163"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(169911..169922)
/locus_tag="BMA10229_A0163"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(169854..169871)
/locus_tag="BMA10229_A0163"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(order(169839..169841,169842..169847))
/locus_tag="BMA10229_A0163"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(169752..169760,169764..169775))
/locus_tag="BMA10229_A0163"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(170350..171780)
/locus_tag="BMA10229_A0164"
/db_xref="GeneID:4793775"
CDS complement(170350..171780)
/locus_tag="BMA10229_A0164"
/EC_number="1.8.1.4"
/note="E3 component of 2-oxoglutarate dehydrogenase
complex; catalyzes the oxidation of dihydrolipoamide to
lipoamide"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide dehydrogenase"
/protein_id="YP_001026169.1"
/db_xref="GI:124385122"
/db_xref="GeneID:4793775"
/translation="MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACIEKWKNPAGALK
LGGTCLNVGCIPSKALLASSEEFENAQHHLADHGISVDGVKMDVAKMLARKDGIVEKM
TGGIEFLFKKNKITWLKGHGKFTGKSDAGVQIEVSGEGETQVVTAKNVIIATGSKARH
LSNVPVDNKIVADNEGALAFDSVPKKLAVIGAGVIGLELGSVWRRLGAEVTVLEALPA
FLGAADEALAKEAAKLFKKQGLDIHLGVKIDGVKTGANGVSIAYTDKDGNAKTLDADR
LIVSVGRVPNTDNLGLEAIGLKANERGFIDVDDHCRTAVPNVYAIGDVVRGPMLAHKA
EDEGVLVAEVIDGQKPHIDYNCIPWVIYTYPEIAWVGKTEQQLKAEGREIKSGKFPFS
INGRALGMNAPDGFVKMIADAKTDELLGVHVIGANASDLIAEAVVAMEFKAASEDIAR
ICHPHPSMSEVMREAALAVDKRSLNS"
misc_feature complement(170356..171780)
/locus_tag="BMA10229_A0164"
/note="dihydrolipoamide dehydrogenase; Validated; Region:
PRK06327"
/db_xref="CDD:180529"
misc_feature complement(170980..171225)
/locus_tag="BMA10229_A0164"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(170383..170712)
/locus_tag="BMA10229_A0164"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene complement(171880..173154)
/gene="sucB"
/locus_tag="BMA10229_A0165"
/db_xref="GeneID:4792984"
CDS complement(171880..173154)
/gene="sucB"
/locus_tag="BMA10229_A0165"
/EC_number="2.3.1.61"
/note="component of 2-oxoglutarate dehydrogenase complex;
catalyzes the transfer of succinyl coenzyme A to form
succinyl CoA as part of the conversion of 2-oxoglutarate
to succinyl-CoA"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide succinyltransferase"
/protein_id="YP_001026170.1"
/db_xref="GI:124385896"
/db_xref="GeneID:4792984"
/translation="MAIVEVKVPQLSESVSEATMLQWKKKPGEAVAQDEILIELETDK
VVLEVPAPAAGVLAQVLQNDGDTVVADQVIATIDTEAKAGAAAAAAGAADVQSAAAPV
AAPAPAAQPAAAASSTAATSPAASKLMAEKGIGAGDVAGSGRDGRITKGDVLSAGSAP
KAAPAAAPAKAAAKPALPEVKVPASATTWLNDRPEQRVPMSRLRARIAERLLESQQTN
AILTTFNEVNMQPVMDLRAKYKDKFEKEHGVKLGFMSFFVKAAVHALKKFPLVNASID
GNDIVYHGYFDIGIAVGSPRGLVVPILRNADQLSLAEIEKKIAEFGQKAKDGKLSIEE
MTGGTFSISNGGVFGSMLSTPIINPPQSAILGVHATKERPVVENGQIVIRPINYLALS
YDHRIIDGREAVLSLVAMKDALEDPARLLLDL"
misc_feature complement(171883..173151)
/gene="sucB"
/locus_tag="BMA10229_A0165"
/note="dihydrolipoamide succinyltransferase; Validated;
Region: PRK05704"
/db_xref="CDD:180214"
misc_feature complement(172924..173145)
/gene="sucB"
/locus_tag="BMA10229_A0165"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature complement(order(173005..173007,173017..173034,
173053..173055))
/gene="sucB"
/locus_tag="BMA10229_A0165"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature complement(173023..173025)
/gene="sucB"
/locus_tag="BMA10229_A0165"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature complement(172690..>172773)
/gene="sucB"
/locus_tag="BMA10229_A0165"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature complement(171889..172515)
/gene="sucB"
/locus_tag="BMA10229_A0165"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:201074"
gene complement(173282..176146)
/gene="sucA"
/locus_tag="BMA10229_A0166"
/db_xref="GeneID:4792110"
CDS complement(173282..176146)
/gene="sucA"
/locus_tag="BMA10229_A0166"
/EC_number="1.2.4.2"
/note="SucA; E1 component of the oxoglutarate
dehydrogenase complex which catalyzes the formation of
succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
reaction of 2-oxoglutarate with dihydrolipoamide
succinyltransferase-lipoate to form dihydrolipoamide
succinyltransferase-succinyldihydrolipoate and carbon
dioxide"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate dehydrogenase E1"
/protein_id="YP_001026171.1"
/db_xref="GI:124384081"
/db_xref="GeneID:4792110"
/translation="MSDVMKQFQLNSYLFGGNASYVEELYEAYLDNPASVPDNWREYF
DALQNVPATDGSNASDVAHNPIVESFAQRAKANAFIPRESGGNLATARKQVHVQSLIS
AYRFLGSQWANLDPLKRRERPAIPELEPAFYDFSEADLDQTFSASNLYFGFEQASLRD
IVKGLRDTYCGTIGAEFMYISDPEQKRWWQERLESTRATPNFSADKKKHILNRLTAGE
GLERYLHTKYVGQKRFSLEGGESFIAAMDEVVQRAGSKGVQEIVIGMAHRGRLNVLVN
TLGKMPADLFAEFEGKHVDDLPAGDVKYHKGFSSDIATEGGPVHLSLAFNPSHLEIVN
PVVEGSAKARMDRRGDADGLQVLPVQIHGDAAFAGQGVVMETLNLAQTRGYGTHGTLH
IVINNQIGFTTSDPRDARSTLYCTDVVKMIEAPVLHVNGDDPEAVVLATQIAIDYRMQ
FHKDVVIDIVCFRKLGHNEQDTPAVTQPLMYKKIAQHPGTRALYAEKLVQQGVISADD
ADGFVKAYRKAMDDGHHTVDPVLSNYKSKYAVDWMPFLNRKWTDAADTAVPLAELKRL
GERITTVPENFKVHPLVERVINDRRNMARGDQPLDWGMGEHLAYASLVASGYAVRLTG
QDSGRGTFTHRHAVLHDQNRERWNDGTYVPLQNVSEGQAKFNVIDSVLSEEAVLGFEY
GYSTAEPNTLVLWEAQFGDFANGAQVVIDQFISSGEVKWGRVSGLTMLLPHGYEGQGP
EHSSARIERYLQLCAEHNMQVVQPTTPAQIFHLLRRQMIRLFRKPLIVATPKSLLRHK
EAVSDLSELAKGSFQPVLGEVDGGIDAKKVKRVIACSGRVYYDLVAHRREAKANDVAI
VRIEQLYPFAHKQFEAEMKKYENATEVVWVQDEPQNQGPWFYVEHHLKEGMKEGQKLA
YSGRPASASPAVGYYAKHYEQQKALVEGAFGRLKSASIAK"
misc_feature complement(173312..176146)
/gene="sucA"
/locus_tag="BMA10229_A0166"
/note="2-oxoglutarate dehydrogenase E1 component;
Reviewed; Region: sucA; PRK09404"
/db_xref="CDD:181824"
misc_feature complement(174704..175489)
/gene="sucA"
/locus_tag="BMA10229_A0166"
/note="Thiamine pyrophosphate (TPP) family, E1 of
OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the 2-oxoglutarate
dehydrogenase multienzyme complex (OGDC). OGDC catalyzes
the oxidative decarboxylation of...; Region:
TPP_E1_OGDC_like; cd02016"
/db_xref="CDD:48179"
misc_feature complement(order(174950..174952,174956..174958,
175049..175060,175157..175159))
/gene="sucA"
/locus_tag="BMA10229_A0166"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48179"
misc_feature complement(173753..174355)
/gene="sucA"
/locus_tag="BMA10229_A0166"
/note="Transketolase, pyrimidine binding domain; Region:
Transket_pyr; pfam02779"
/db_xref="CDD:202390"
gene complement(176485..178311)
/gene="typA"
/locus_tag="BMA10229_A0167"
/db_xref="GeneID:4790982"
CDS complement(176485..178311)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="identified by match to protein family HMM PF00009;
match to protein family HMM PF00679; match to protein
family HMM PF03144; match to protein family HMM TIGR00231;
match to protein family HMM TIGR01394"
/codon_start=1
/transl_table=11
/product="GTP-binding protein TypA"
/protein_id="YP_001026172.1"
/db_xref="GI:124384122"
/db_xref="GeneID:4790982"
/translation="MTRALRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAERVMD
SNDIEKERGITILAKNCAVEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAV
EGPMPQTRFVTKKALALGLKPIVVINKIDRPGARIDWVINQTFDLFDKLGATEEQLDF
PIVYASGLNGYASLDPAARDGDMRPLFEAILQHVPVRPADPDAPLQLQITSLDYSTYV
GRIGVGRITRGRIKPGQPVVMRFGPEGDVLNRKINQVLSFQGLERVQVDSAEAGDIVL
INGIEDVGIGATICAVEAPEALPMITVDEPTLTMNFLVNSSPLAGREGKFVTSRQIRD
RLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRREGYELAVSRPRVVMQE
IDGVKHEPYELLTVDLEDEHQGGVMEELGRRKGEMLDMVSDGRGRTRLEYRIPARGLI
GFQSEFLTLTRGTGLMSHIFDSYAPVKEGSVGERRNGVLISQDDGAAVAYALWKLQDR
GRMFVKPGDALYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVPPIQMSL
EYAVEFIDDDELVEVTPQSIRLRKRHLKEHERRRASREAEAG"
misc_feature complement(176554..178311)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="Predicted membrane GTPase involved in stress
response [Signal transduction mechanisms]; Region: TypA;
COG1217"
/db_xref="CDD:224138"
misc_feature complement(177727..178299)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="Tyrosine phosphorylated protein A (TypA)/BipA
family belongs to ribosome-binding GTPases; Region:
TypA_BipA; cd01891"
/db_xref="CDD:206678"
misc_feature complement(178255..178278)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="G1 box; other site"
/db_xref="CDD:206678"
misc_feature complement(order(177883..177885,177895..177897,
178003..178008,178075..178080,178132..178137,
178231..178236,178243..178245,178252..178257,
178267..178269,178273..178275))
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206678"
misc_feature complement(order(177808..177816,177919..177921,
177925..177930,178252..178269))
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206678"
misc_feature complement(178135..178170)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="Switch I region; other site"
/db_xref="CDD:206678"
misc_feature complement(178147..178149)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="G2 box; other site"
/db_xref="CDD:206678"
misc_feature complement(178081..178092)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="G3 box; other site"
/db_xref="CDD:206678"
misc_feature complement(178030..178086)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="Switch II region; other site"
/db_xref="CDD:206678"
misc_feature complement(177919..177930)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="G4 box; other site"
/db_xref="CDD:206678"
misc_feature complement(177808..177816)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="G5 box; other site"
/db_xref="CDD:206678"
misc_feature complement(177439..177699)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="BipA_TypA_II: domain II of BipA (also called TypA)
having homology to domain II of the elongation factors
(EFs) EF-G and EF-Tu. BipA is a highly conserved protein
with global regulatory properties in Escherichia coli.
BipA is phosphorylated on a...; Region: BipA_TypA_II;
cd03691"
/db_xref="CDD:239662"
misc_feature complement(176881..177117)
/gene="typA"
/locus_tag="BMA10229_A0167"
/note="BipA_TypA_C: a C-terminal portion of BipA or TypA
having homology to the C terminal domains of the
elongation factors EF-G and EF-2. A member of the ribosome
binding GTPase superfamily, BipA is widely distributed in
bacteria and plants. BipA is a highly...; Region:
BipA_TypA_C; cd03710"
/db_xref="CDD:239681"
gene 178264..178404
/locus_tag="BMA10229_A0168"
/db_xref="GeneID:4790842"
CDS 178264..178404
/locus_tag="BMA10229_A0168"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026173.1"
/db_xref="GI:124384851"
/db_xref="GeneID:4790842"
/translation="MVDVGDDGDVAKGAGHRNLKTDGTRKRARTVLSDARALCSLESL
KL"
gene 178604..179101
/locus_tag="BMA10229_A0169"
/db_xref="GeneID:4793254"
CDS 178604..179101
/locus_tag="BMA10229_A0169"
/note="identified by match to protein family HMM PF01047"
/codon_start=1
/transl_table=11
/product="MarR family transcriptional regulator"
/protein_id="YP_001026174.1"
/db_xref="GI:124385452"
/db_xref="GeneID:4793254"
/translation="MSDPSSPQPDQDLALYQINDSVGYLMSRVKSLMTNMVTQRTQTE
LGITGTQATMLFMLAVGKCSTAAELAREYGIDASAITRLLDRVEKRGLLQRVRSSEDR
RVVRLELTDEGRALTKRMPAIFRSVLDEVLDGFTPEEVGFLKSMLRRILVNSGECPGA
TGSTS"
misc_feature 178685..179056
/locus_tag="BMA10229_A0169"
/note="Transcriptional regulators [Transcription]; Region:
MarR; COG1846"
/db_xref="CDD:224759"
misc_feature 178736..178885
/locus_tag="BMA10229_A0169"
/note="MarR family; Region: MarR_2; pfam12802"
/db_xref="CDD:221778"
gene 179201..180697
/locus_tag="BMA10229_A0170"
/db_xref="GeneID:4792565"
CDS 179201..180697
/locus_tag="BMA10229_A0170"
/note="identified by match to protein family HMM PF02321;
match to protein family HMM TIGR01845"
/codon_start=1
/transl_table=11
/product="RND efflux system outer membrane lipoprotein"
/protein_id="YP_001026175.1"
/db_xref="GI:124383712"
/db_xref="GeneID:4792565"
/translation="MKTFPLSACRTAVAVAVAALALAGCANYFGLKNDKAIAPAAQFE
SARSLPAQGGQWPSLDWANQFGDPQLPKLIDEALEGNPTIAQAQARIAKASSYIESSR
STLLPKADAKYSWTRELYSGNALFPPPYGGQWYSENNALASASWELDLWGKNRARLNA
AVSQEKAAEADLQQARVTLATSVARTYNQLAQLYALRDIAGREISNRQTVDKITDGRV
GAGLDTNVERQTARGNIATSQSTLSDLDGQITNVRYQLAALLGKGPDRGLQIAAPVLS
AGGAVALPENLPADLVSRRPDLVAARWQVEAAMHDVKEAKAEFFPDINLAAGFGFDAF
GWGRFLNFASRQAQFGPAIHLPIFDGGALRAQLKGRYADFDLSVANYNQTLINALNDV
ATQVASIRSVDTQMGDAQRALDASTRAYELAVIRYKAGLSPQLQVLNADSNRLAAEQT
VTNLKMRRRDLQIGLVKALGGGFDAAGTRLAAPAPASAPAAPAQHASN"
misc_feature 179270..180616
/locus_tag="BMA10229_A0170"
/note="efflux transporter, outer membrane factor (OMF)
lipoprotein, NodT family; Region: outer_NodT; TIGR01845"
/db_xref="CDD:162557"
gene 180765..182000
/locus_tag="BMA10229_A0171"
/db_xref="GeneID:4790681"
CDS 180765..182000
/locus_tag="BMA10229_A0171"
/note="identified by match to protein family HMM PF00529"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein"
/protein_id="YP_001026176.1"
/db_xref="GI:124385949"
/db_xref="GeneID:4790681"
/translation="MSDPQQNAAPAQPQNNGKRKRMMTLLVVVIAIAAIAYGLYYLLV
ARFHETTDDAYVNGNVVQITPQVTGTVIAVKADDTQTVKSGDPLVVLDPADSQVALQQ
AEANLAQTVRQVRGLYVNDDQYRAQVALRQSDLSKAQDDLRRRLAVAQTGAVSQEEIS
HARDAVKAAQASLDAAGQQLASNRALTANTTVADHPNVLAAAAKVRDAYLNNARNTLP
APVTGYVAKRSVRVGQRVSPGTPLMSVVPLNAVWVDANFKEVQLKHMRIGQPVELTAD
IYGSSVKYHGKVIGFSAGTGAAFSLLPAQNATGNWIKVVQRLPVRVELDPKELKEHPL
RIGLSMQVDVDIKDESGNQLGNVQNTVYETDVFAKYGDEADAEIARIIAQNAGGGAAG
GASAPTPAAKLVGRASNLM"
misc_feature 180813..181868
/locus_tag="BMA10229_A0171"
/note="multidrug efflux system protein EmrA; Provisional;
Region: PRK15136"
/db_xref="CDD:185090"
misc_feature 180939..181088
/locus_tag="BMA10229_A0171"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 181419..181679
/locus_tag="BMA10229_A0171"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 182023..183582
/locus_tag="BMA10229_A0172"
/db_xref="GeneID:4792164"
CDS 182023..183582
/locus_tag="BMA10229_A0172"
/note="identified by match to protein family HMM PF07690;
match to protein family HMM TIGR00711"
/codon_start=1
/transl_table=11
/product="EmrB/QacA family drug resistance transporter"
/protein_id="YP_001026177.1"
/db_xref="GI:124385339"
/db_xref="GeneID:4792164"
/translation="MAQPHAPLPPLAGGQLILGTIAVSLAVFMNVLDTSIANVAIPTI
SGDLGVSSDQGTWVITSFAVANAISVPLTGWLTDRIGQVRLFLASIILFVISSWMCGL
APTLPFLLASRVLQGAVAGPMIPLSQALLLSSYPRAKAPMALALWSMTTLIAPVAGPI
LGGWISDNYSWPWIFYVNIPVGIAAAAVTWMIYRSRESAVRRAPIDGVGLALLVIWVG
SLQIMLDKGKDLDWFASTTIVVLALTALIAFAFFVVWELTAEHPVVDLSLFRMRNFSG
GTIALSVGYGLYFGNLVLLPLWLQTQIGYTATDAGLVMAPVGFFAILLSPLTGKFLSR
TDPRYIATAAFLTFALCFWMRSRYTTGVDEWSLMAPTFVQGIAMAGFFIPLVSITLSG
LPGHRIPAASGLSNFVRIMCGGIGTSIFQTAWDHRNNFHHAQLVEQANPYNPTFNQAV
TQMGQLGFTRDQAHGLINNMATQQAAQLGVNDLFYISAAIFVLLIALIWITKPERAGG
GDSSAAASAAH"
misc_feature 182071..183525
/locus_tag="BMA10229_A0172"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
misc_feature 182080..>182604
/locus_tag="BMA10229_A0172"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(182122..182124,182131..182139,182143..182148,
182197..182199,182206..182211,182218..182220,
182230..182235,182239..182244,182380..182385,
182392..182397,182404..182409,182416..182418,
182452..182457,182464..182469,182485..182487)
/locus_tag="BMA10229_A0172"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature <182818..183306
/locus_tag="BMA10229_A0172"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(183853..184818)
/gene="truB"
/locus_tag="BMA10229_A0173"
/db_xref="GeneID:4792657"
CDS complement(183853..184818)
/gene="truB"
/locus_tag="BMA10229_A0173"
/EC_number="5.4.99.-"
/note="catalyzes isomerization of specific uridines in RNA
to pseudouridine; responsible for residues in T loops of
many tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_001026178.1"
/db_xref="GI:124384423"
/db_xref="GeneID:4792657"
/translation="MSIARALVQTMTTVSPRPRMARRALDGVLLLDKPVGLSSNDALM
RAKRLYQAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEATMRLGVRTTT
GDAEGDVLDTRDVSCDEAAVRAALARFVGEIVQVPPMYSALKRDGKPLYEYARAGQTV
EREGRTVTIRALALVSCALPDVTFRVTCSKGTYVRTLAEDIGEALGCGAHLTMLRRTG
VGPLTLEHAVTLDALDAATQDERDARLAPVDALLSTFPCVKLDAALATRFLHGQRLKL
SELAARPDAAEGGRVRVYDADDRLLGVARASEGVLAPERLVVTGA"
misc_feature complement(183862..184788)
/gene="truB"
/locus_tag="BMA10229_A0173"
/note="tRNA pseudouridine synthase B; Provisional; Region:
truB; PRK01851"
/db_xref="CDD:179343"
misc_feature complement(184111..184740)
/gene="truB"
/locus_tag="BMA10229_A0173"
/note="Pseudouridine synthase, Escherichia coli TruB like;
Region: PseudoU_synth_EcTruB; cd02573"
/db_xref="CDD:211339"
misc_feature complement(order(184171..184173,184234..184251,
184324..184326,184387..184401,184549..184551,
184555..184557,184567..184569,184576..184581,
184588..184590,184630..184644,184648..184656,
184690..184692,184699..184701,184705..184707))
/gene="truB"
/locus_tag="BMA10229_A0173"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:211339"
misc_feature complement(order(184234..184236,184633..184644))
/gene="truB"
/locus_tag="BMA10229_A0173"
/note="active site"
/db_xref="CDD:211339"
misc_feature complement(183868..184053)
/gene="truB"
/locus_tag="BMA10229_A0173"
/note="Pseudouridine synthase II TruB, C-terminal; Region:
TruB-C_2; pfam09157"
/db_xref="CDD:204153"
gene complement(184815..185231)
/gene="rbfA"
/locus_tag="BMA10229_A0174"
/db_xref="GeneID:4793548"
CDS complement(184815..185231)
/gene="rbfA"
/locus_tag="BMA10229_A0174"
/note="associates with free 30S ribosomal subunits;
essential for efficient processing of 16S rRNA; in
Escherichia coli rbfA is induced by cold shock"
/codon_start=1
/transl_table=11
/product="ribosome-binding factor A"
/protein_id="YP_001026179.1"
/db_xref="GI:124383895"
/db_xref="GeneID:4793548"
/translation="MNGVARFADQPDGGFIMSKKRSSPNRNVQIADQIQRDLSELIMR
EVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGTPADTQEALNHAAGHLHNLLFKRLH
IHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD"
misc_feature complement(184821..185174)
/gene="rbfA"
/locus_tag="BMA10229_A0174"
/note="ribosome-binding factor A; Validated; Region: rbfA;
PRK00521"
/db_xref="CDD:179054"
gene complement(185289..188216)
/gene="infB"
/locus_tag="BMA10229_A0175"
/db_xref="GeneID:4791157"
CDS complement(185289..188216)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="Protects formylmethionyl-tRNA from spontaneous
hydrolysis and promotes its binding to the 30S ribosomal
subunits during initiation of protein synthesis. Also
involved in the hydrolysis of GTP during the formation of
the 70S ribosomal complex"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_001026180.1"
/db_xref="GI:124385783"
/db_xref="GeneID:4791157"
/translation="MASNNVAQFAAELKMPAGVLLEQLQAAGVQKASEDDALSETDKA
RLLDHLRKSHGATDGDKRKITLTRRHTSEIKQADATGKARTIQVEVRKKRTFVKRDDV
SETGADQAQAQTDEQAEAELKRREEEARREAELLEKQAQELRERQERLEREEAERRAR
EEAAEAERRRAEEEAAAKRAAAAQAEAAQQAAAAREQAQRAQSEPAEQSAQDEARAAA
ERAAQREAAKKAEDAAREAADKARAEQEEIRKRREAAEAEARAIREMMNTPRRAQVKA
VEPPKPAEPPAAKAAEAKGTLHKPAKPAGEAAAARPAAKKPASGAPAPAAAPAGDRTK
KPGTGKSGWQDDAAKRRGIKTRGDSSGGVDRGWRGGPKGRGKHQDSASSFQAPTEPIV
REVHVPETISVADLAHKMSIKASEVIKVMMKMGQMVTINQVLDQETAMIVVEELGHRA
LAAKLDDPEALLVEGEIGSDAEQLPRPPVVTVMGHVDHGKTSLLDYIRRAKVAAGEAG
GITQHIGAYHVETPRGVVTFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTK
EAISHAKAGGVPIVVAINKIDKPEANPDRVKQELVAEGVVPEEYGGDSPFVPVSAKTG
AGIDDLLENVLLQAEVLELKAPVESPAKGIVIEAKLDKGKGPVATVLVQSGTLSRGDV
VLAGTAYGRVRAMLDENGKPTKEAGPSIPVEIQGLSEVPGAGDEVIVLPDERKAREIA
LFRQGKFRDVKLAKQQAAKLESMLEQMGEGEVQNLPLIIKADVQGSQEALVQSLLKLS
TDEVRVQIVHSAVGGISESDVNLATASKAVIIGFNTRADAQARKLAEANGIDIRYYNI
IYDAVDEVKAAMSGMLAPEKREVVTGMVEVRQVFKVPKVGTVAGCMVTDGVVKRSSSV
RVLRNNVVIFTGELDSLKRFKDDVKEVKQGFECGMSLKNFNDIVEGDQFEVFEVTEVA
RTL"
misc_feature complement(187917..188036)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="Bacterial translation initiation factor IF-2
associated region; Region: IF2_assoc; pfam08364"
/db_xref="CDD:203919"
misc_feature complement(185292..187049)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature complement(186873..187025)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature complement(186294..186785)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature complement(186744..186767)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature complement(order(186423..186425,186435..186437,
186540..186545,186612..186617,186669..186674,
186720..186725,186732..186734,186741..186746,
186756..186758,186762..186764))
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature complement(order(186351..186359,186453..186458,
186462..186467,186612..186614,186741..186761))
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature complement(186672..186692)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature complement(186684..186686)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature complement(186618..186629)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature complement(186567..186623)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature complement(186456..186467)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature complement(186351..186359)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature complement(185985..186266)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature complement(185619..185945)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature complement(185322..185573)
/gene="infB"
/locus_tag="BMA10229_A0175"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene complement(188308..189783)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/db_xref="GeneID:4792358"
CDS complement(188308..189783)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="modifies transcription through interactions with
RNA polymerase affecting elongation, readthrough,
termination, and antitermination"
/codon_start=1
/transl_table=11
/product="transcription elongation factor NusA"
/protein_id="YP_001026181.1"
/db_xref="GI:124384704"
/db_xref="GeneID:4792358"
/translation="MSREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAE
IRVHIDRESGEHETFRRWLVVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPS
IEFGRIGAQAAKQVILQKVRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRV
EALLRRDQLIPKENLRVGDRVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEI
EQGLLEIKAAARDPGVRAKIGVVAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIV
LWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAIGRSGQNVRLASELT
GWQINIMTPDESAQKQNEERDALRGLFMARLDVDEEVADILIDEGFTSLEEIAYVPLN
EMLEIEAFDEDTVHELRNRSRDALLTMAIANEEKVETAALDLKSLDGVTPELLAKLAE
QGVQTRDDLAELAVDELVDMTGMEEEAAKALIMKAREHWFQ"
misc_feature complement(188356..189783)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="transcription elongation factor NusA; Validated;
Region: nusA; PRK09202"
/db_xref="CDD:236410"
misc_feature complement(189400..189774)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:219884"
misc_feature complement(189181..189381)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:239902"
misc_feature complement(order(189289..189291,189295..189297,
189322..189324,189346..189348))
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239902"
misc_feature complement(order(189196..189198,189295..189297,
189301..189303,189328..189330,189340..189342))
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239902"
misc_feature complement(188890..189090)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature complement(188761..188940)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:239049"
misc_feature complement(188812..188823)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="G-X-X-G motif; other site"
/db_xref="CDD:239049"
misc_feature complement(188536..188685)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
misc_feature complement(188317..188457)
/gene="nusA"
/locus_tag="BMA10229_A0176"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
gene complement(189780..190241)
/locus_tag="BMA10229_A0177"
/db_xref="GeneID:4793288"
CDS complement(189780..190241)
/locus_tag="BMA10229_A0177"
/note="in Streptococcus pneumoniae this gene was found to
be essential; structure determination of the Streptococcus
protein shows that it is similar to a number of other
proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026182.1"
/db_xref="GI:124386071"
/db_xref="GeneID:4793288"
/translation="MQLTELIETTVTGLGYELVDLERTGRGMVCVYIDQPAGITIDDC
EKVTRQLQHVLTVENIDYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDGRK
TYRGILHAPNGETIGLEFERKKGEAAMLDFTLADIDKARLIPHVDFRSRKQ"
misc_feature complement(189807..190241)
/locus_tag="BMA10229_A0177"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:234627"
misc_feature complement(<189972..190241)
/locus_tag="BMA10229_A0177"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:241733"
misc_feature complement(189810..190031)
/locus_tag="BMA10229_A0177"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature complement(order(189819..189836,189840..189845,
189849..189857,189891..189893,189912..189914,
189930..189932,189936..189938,189957..189959,
189963..189965))
/locus_tag="BMA10229_A0177"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature complement(order(189843..189845,189900..189902,
189906..189908))
/locus_tag="BMA10229_A0177"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene complement(190546..192210)
/locus_tag="BMA10229_A0178"
/db_xref="GeneID:4791923"
CDS complement(190546..192210)
/locus_tag="BMA10229_A0178"
/EC_number="5.4.99.-"
/note="identified by match to protein family HMM PF00849;
match to protein family HMM PF01479; match to protein
family HMM TIGR00093"
/codon_start=1
/transl_table=11
/product="RNA pseudouridine synthase"
/protein_id="YP_001026183.1"
/db_xref="GI:124385307"
/db_xref="GeneID:4791923"
/translation="MTDTHDIDSSESAHAVATARADDAPEQSAADAGGEDRPRRGLRR
GPRSLIARRRAAAKSKHSDAPESADAAPAADAGAGADVAKAPARAPRGKDAAAKPPRK
TAGKREGAARQGAQPKRGAQQAAAAVAPSAEAGQDDVFAYVISPAFDADNNAPGGGVR
APMLRRGRQTQPKRVLSPDDDAPKLHKVLAEAGMGSRREMEELIIAGRVSVNGEPAHI
GQRIMPTDQVRINGKPVKRKLPSKPPRVLLYHKPTGEIVSHADPEGRPSVFDRLPPMK
TAKWLAVGRLDFNTEGLLMLTTSGDLANRFMHPRYSVEREYAVRVVGELSEASRQKLL
HGVELDDGPANFLRIRDGGGEGTNHWYHVALAEGRNREVRRMFEAVGLMVSRLIRTRH
GPIPLPRGLKRGRWEELDEAQVRRLMSTVGLKAPTEDKGGKRGGPVERRQPDPMQTSM
GFINREPVLTTHGQLDQPRRGRRGPAGGGFGAGLGGGYAGLPGYGGASRQGGRDVDGN
RASYGGAGANKRGAGKGGRNPNGNRAEGGARGGPRTPQQRNRSRSR"
misc_feature complement(190939..191670)
/locus_tag="BMA10229_A0178"
/note="16S rRNA uridine-516 pseudouridylate synthase and
related pseudouridylate synthases [Translation, ribosomal
structure and biogenesis]; Region: RsuA; COG1187"
/db_xref="CDD:31380"
misc_feature complement(191461..191658)
/locus_tag="BMA10229_A0178"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(191542..191544,191548..191556,
191557..191568,191587..191589,191593..191598,
191605..191610,191614..191619,191623..191628))
/locus_tag="BMA10229_A0178"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature complement(190978..191478)
/locus_tag="BMA10229_A0178"
/note="Pseudouridine synthase, Escherichia coli RluB like;
Region: PseudoU_synth_RluB; cd02556"
/db_xref="CDD:211330"
misc_feature complement(order(191089..191091,191350..191361))
/locus_tag="BMA10229_A0178"
/note="probable active site [active]"
/db_xref="CDD:211330"
gene complement(192274..193602)
/gene="scpB"
/locus_tag="BMA10229_A0179"
/db_xref="GeneID:4792806"
CDS complement(192274..193602)
/gene="scpB"
/locus_tag="BMA10229_A0179"
/note="identified by match to protein family HMM PF04079;
match to protein family HMM TIGR00281"
/codon_start=1
/transl_table=11
/product="segregation and condensation protein B"
/protein_id="YP_001026184.1"
/db_xref="GI:124385017"
/db_xref="GeneID:4792806"
/translation="MNAQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLE
DLKQEWTGRGVELVALASGWRFQSKPAMRTYLDRLHPEKPPKYSRAVLETLAIIAYRQ
PVTRGDIEEIRGVTVNTQVVKQLEDRGWIEVIGQRDVPGRPALYATTKQFLDDLGLKA
LDDLPALEEPAAHLEASLLAQQAIDFPDDARGDGEAPAVAPETDAAAAQAGEVAEPAS
DSVVLRNEDTARADEPRQEGATDGLAARIGDPADNDAGRADVDVDAAPALGEADAPRG
GDASGHAAREIDSREMTEPADAGGEAAGTTASHTHAVAPYHDAQSAADAVAAPHAGDA
AADGERAESPSGTNENANYVAQPDAEPADAAHAATREAAADPAAGRATKEDHGAIGGI
PHDAEPVRAHAEEALDDTSDSLADAVRSASEAAPEHERQDDEDAPAKRRA"
misc_feature complement(193147..193578)
/gene="scpB"
/locus_tag="BMA10229_A0179"
/note="Putative transcriptional regulators (Ypuh-like);
Region: DUF387; pfam04079"
/db_xref="CDD:146615"
gene complement(194021..194923)
/locus_tag="BMA10229_A0180"
/db_xref="GeneID:4793058"
CDS complement(194021..194923)
/locus_tag="BMA10229_A0180"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_001026185.1"
/db_xref="GI:124384461"
/db_xref="GeneID:4793058"
/translation="MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGE
IGLKLIDRTTRDVQLTDVGTNLIASVSRLLGDLDDALREIREIGEQRRGRVIVAASPT
IACRLMPRVVAACERRFPFVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSELISE
PLMTDSFCLVARADHPLAARDRVPWTALAGERLVLLDYASGSRPLIDAALAAHRVAAG
VVQELGHSATVFGLVEAGVGVSVLPWLSLPLPAGSSLVARPLAPRAERTVELVRRRDR
SLSPAADAVWGLVKEMPARVEDLN"
misc_feature complement(194051..194917)
/locus_tag="BMA10229_A0180"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(194735..194911)
/locus_tag="BMA10229_A0180"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(194057..194641)
/locus_tag="BMA10229_A0180"
/note="TThe C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator,
contains the type 2 periplasmic binding fold; Region:
PBP2_LTTR_like_4; cd08440"
/db_xref="CDD:176131"
misc_feature complement(order(194219..194224,194228..194233,
194249..194266,194540..194560,194564..194566,
194576..194578,194585..194590,194594..194599))
/locus_tag="BMA10229_A0180"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176131"
gene 195345..195743
/locus_tag="BMA10229_A0181"
/db_xref="GeneID:4793587"
CDS 195345..195743
/locus_tag="BMA10229_A0181"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026186.1"
/db_xref="GI:124384890"
/db_xref="GeneID:4793587"
/translation="MLFDDLRDNEWALLEGLFCSEPARSERRGRPRVEARSVVNAVLW
VLSTGEGWSKLPGRYPSPPTCRRRFDEWQADGTLAEVVKRLGTSGRQISLRGRIGASA
VKPPAPPSRDRLRGAFWTNPESWRAPVKMA"
misc_feature 195360..195593
/locus_tag="BMA10229_A0181"
/note="Putative transposase of IS4/5 family (DUF4096);
Region: DUF4096; pfam13340"
/db_xref="CDD:205520"
gene complement(196365..196658)
/locus_tag="BMA10229_A0182"
/db_xref="GeneID:4793112"
CDS complement(196365..196658)
/locus_tag="BMA10229_A0182"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026187.1"
/db_xref="GI:124385151"
/db_xref="GeneID:4793112"
/translation="MLDALRRVQYRQVPWARRPGVFEYLRALGLMDTVRQKTVAPAPG
FHAPVDIAVLTDNGRVEFTRLERDEKQPDWETRRIEDYALSEASAVSILESRL"
gene 196883..197605
/locus_tag="BMA10229_A0183"
/db_xref="GeneID:4792831"
CDS 196883..197605
/locus_tag="BMA10229_A0183"
/note="identified by match to protein family HMM PF02698"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026188.1"
/db_xref="GI:124385403"
/db_xref="GeneID:4792831"
/translation="MILFNSFGLLFVVFLLCRKRRGAFAILAAGAALLWLIASGWLAA
PLVALAQAGMQPVAHPTMTGDTVIVMLGAGIERRDGVAIPPRDALARIDKTAELYSAC
RRTAQRCTVVVSGGDPQVRGIAEADTYAPYLLARGVASADLIREKRSHTTYENARFTA
PILRAQHYDDLILVTSSYQMKRALLDFERFGFAPQPVYANRRDARLGWLPRAANLANA
ELALHEIVGVAQFHVYRRLGWF"
misc_feature 197081..197479
/locus_tag="BMA10229_A0183"
/note="YdcF-like. YdcF-like is a large family of mainly
bacterial proteins, with a few members found in fungi,
plants, and archaea. Escherichia coli YdcF has been shown
to bind S-adenosyl-L-methionine (AdoMet), but a
biochemical function has not been...; Region: YdcF-like;
cd06259"
/db_xref="CDD:99750"
misc_feature order(197336..197338,197345..197347,197405..197407,
197417..197419,197426..197428)
/locus_tag="BMA10229_A0183"
/note="putative active site [active]"
/db_xref="CDD:99750"
gene 197844..198122
/locus_tag="BMA10229_A0184"
/db_xref="GeneID:4792709"
CDS 197844..198122
/locus_tag="BMA10229_A0184"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026189.1"
/db_xref="GI:124386549"
/db_xref="GeneID:4792709"
/translation="MKKMTMAILVSMSALAGAAQAQESTEIKTITDPAKIAEIEQRAQ
ALQQQQAAAPAAEAMPMHEQHKPKHHAKKAHKGAKKAAKAAPADAASQ"
misc_feature 197844..>197906
/locus_tag="BMA10229_A0184"
/note="outer membrane protein A; Reviewed; Region:
PRK10808"
/db_xref="CDD:236764"
gene 198271..198528
/locus_tag="BMA10229_A0185"
/db_xref="GeneID:4791498"
CDS 198271..198528
/locus_tag="BMA10229_A0185"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026190.1"
/db_xref="GI:124384394"
/db_xref="GeneID:4791498"
/translation="MSNIQLDIEWTEAATRKIKQLMPRGSDDAFLALPPIECLPMEGD
VLFLGPQGKQQPFIVAERQYHHDGDADWTIILILDVPNASH"
gene complement(198578..198868)
/locus_tag="BMA10229_A0186"
/db_xref="GeneID:4793660"
CDS complement(198578..198868)
/locus_tag="BMA10229_A0186"
/note="identified by match to protein family HMM PF03992"
/codon_start=1
/transl_table=11
/product="antibiotic biosynthesis monooxygenase"
/protein_id="YP_001026191.1"
/db_xref="GI:124384679"
/db_xref="GeneID:4793660"
/translation="MSEVAVVALIVAKPGAEAKLLEQLEGIVGPTRSEEGALQYDLHR
DLQEPRRFIFIERWASEAALAAHARSAHIDAYKRAAADWIESSEIRVASKVA"
misc_feature complement(<198707..198868)
/locus_tag="BMA10229_A0186"
/note="Antibiotic biosynthesis monooxygenase; Region: ABM;
cl10022"
/db_xref="CDD:245234"
gene 199018..199281
/locus_tag="BMA10229_A0187"
/db_xref="GeneID:4793443"
CDS 199018..199281
/locus_tag="BMA10229_A0187"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfA"
/protein_id="YP_001026192.1"
/db_xref="GI:124385359"
/db_xref="GeneID:4793443"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLAEAMLDMEALKVVVKGKP"
misc_feature 199021..199218
/locus_tag="BMA10229_A0187"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 199305..200138
/locus_tag="BMA10229_A0188"
/db_xref="GeneID:4792635"
CDS 199305..200138
/locus_tag="BMA10229_A0188"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfB"
/protein_id="YP_001026193.1"
/db_xref="GI:124386064"
/db_xref="GeneID:4792635"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQGYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature 199362..200078
/locus_tag="BMA10229_A0188"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature 199407..199577
/locus_tag="BMA10229_A0188"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature 199623..199961
/locus_tag="BMA10229_A0188"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 199872..200072
/locus_tag="BMA10229_A0188"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene 200213..200824
/locus_tag="BMA10229_A0189"
/note="ISBma2, transposase, truncation"
/pseudo
/db_xref="GeneID:4791916"
gene complement(200937..202163)
/locus_tag="BMA10229_A0190"
/db_xref="GeneID:4793796"
CDS complement(200937..202163)
/locus_tag="BMA10229_A0190"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026194.1"
/db_xref="GI:124384227"
/db_xref="GeneID:4793796"
/translation="MWKDSQNMTDLRLTKRFAALLATGAFVAGCSSPSPTKIDYKSDS
KSKEVSLAVPPNMLDETPDQRSLPPQGGATSLSSLQQVQQAAPPTDSVAPAVPGMHIQ
RDGTESWLVIDDKAPAQIWPQVRRFWQEQGFLLVVEQRDKGVMETDWNETHPQINDGL
IRGVISKAMGNSYVTAERNKYRTRLDAAPNGGTYVFISQKGMREALTGANNDSSKWEP
KPNDPGLETEYLKRLMAVIAQNDARVKAAGVPITDDAAPSRAKASSNKSKEAAAAIAA
KNVASASTSSAPSGASVPDVPPEVTLAEPYDRSWLHVGLALDRANFTVDDRDRTKGLY
YVRYVDPKDLSVEEQGFWSQLFHGKKEKKAKQYLVNVKAVTEGETRIAVVDDKGNVDA
SAPARQIMSLLVNQLR"
misc_feature complement(200940..202124)
/locus_tag="BMA10229_A0190"
/note="Uncharacterized lipoprotein [Cell envelope
biogenesis, outer membrane]; Region: NlpB; COG3317"
/db_xref="CDD:33126"
misc_feature complement(<201675..201902)
/locus_tag="BMA10229_A0190"
/note="NlpB/DapX lipoprotein; Region: Lipoprotein_18;
pfam06804"
/db_xref="CDD:148421"
misc_feature complement(200997..>201272)
/locus_tag="BMA10229_A0190"
/note="NlpB/DapX lipoprotein; Region: Lipoprotein_18;
pfam06804"
/db_xref="CDD:148421"
gene 202320..202451
/locus_tag="BMA10229_A0191"
/db_xref="GeneID:4790767"
CDS 202320..202451
/locus_tag="BMA10229_A0191"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026195.1"
/db_xref="GI:124384973"
/db_xref="GeneID:4790767"
/translation="MGPRRARTSASARCAAHPRPLGITSIRFPQFQAPRAPALTIMN"
gene 202492..202983
/locus_tag="BMA10229_A0192"
/db_xref="GeneID:4793014"
CDS 202492..202983
/locus_tag="BMA10229_A0192"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026196.1"
/db_xref="GI:124384486"
/db_xref="GeneID:4793014"
/translation="MNNKKSSPPTRRRPTRALVAAAAVTFAPVTAQSQLGSTVASPSA
RALVQASSATLPNGAVTMRSYVDAGGTTIHEYATRAGLVFAYTWDGPTSPNLRKLLGE
RFPTFQSHAVTTDAHARASLHAGRVAQSDFVVEAGGRMRAYVGRAWLPGAVPPGVSID
DLR"
misc_feature 202585..202977
/locus_tag="BMA10229_A0192"
/note="Protein of unknown function (DUF2844); Region:
DUF2844; pfam11005"
/db_xref="CDD:151452"
gene 202994..204196
/locus_tag="BMA10229_A0193"
/db_xref="GeneID:4793612"
CDS 202994..204196
/locus_tag="BMA10229_A0193"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026197.1"
/db_xref="GI:124384006"
/db_xref="GeneID:4793612"
/translation="MPLKIAWYTAALAATLAACGGGGGGGGSTTSNSNGTGVTPSSAA
NVQPVTVSAGITGAANMLMTSVTVCVPNTNQCQTIDNVQVDTGSDGLRILAAALPSSV
ALPVVPAANAPITGACAIFGTGFTWGAVRRADVRIAGEIAANIPIQVIADSSTPNAPI
DCTQSAGPMQTQGALRANGILGIGLFVTDCGTACANSALPGWYYGCTTSGTCASTSQP
IAQQIANPIGAFASDNNGSIIVLPAISPTGAATVNGSLIFGIGTQANNGLGTATPLVT
TASDAYVTSVLNGNTNARTFFDSGSNGIFFANASLPQCGSWFCPASTQTFDITLSSGN
GASKATTFQVASSQVLFSTFNFAFNDLAGPIGNVVDLGLSFFYGRNVYTALEGSATPA
GPGPYYAY"
misc_feature 203105..204193
/locus_tag="BMA10229_A0193"
/note="Protein of unknown function (DUF3443); Region:
DUF3443; pfam11925"
/db_xref="CDD:152360"
gene 204419..204495
/locus_tag="BMA10229_A0194"
/db_xref="GeneID:4791088"
tRNA 204419..204495
/locus_tag="BMA10229_A0194"
/product="tRNA-Pro"
/db_xref="GeneID:4791088"
gene 204821..206941
/locus_tag="BMA10229_A0195"
/db_xref="GeneID:4791444"
CDS 204821..206941
/locus_tag="BMA10229_A0195"
/note="identified by match to protein family HMM PF05665"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026198.1"
/db_xref="GI:124386013"
/db_xref="GeneID:4791444"
/translation="MRSCAGTAVTLAVLSAGCAESTPKSGNGGAASTAIERTKADRLA
REQQTARTVPTLASIKIDQPRPLTLRDSGQSGTLAFLREVDFRIVGDLGFLVHELSAT
LVPTHPGAPTVFDDPTSFDIAVHRGTVTLDNTKLNALFGGYIFGYRNAPLRNVRVSAG
DGFLDIRGEMQRDGWVPFALKGKLEIRDGSTLVFHPTDVHVSGIEAGPVMRAAKVQVS
DLLKIDTPIVRLNGNDLVLNVDKLLPPPHLKINIVSLKLTSAGLDLVLDDGTKAGFTM
PENAPKHAMYLRGGDVKFMRTMPMNADIVIYPPRESSPDDAFVFDMYHYRDQLVAGYF
NFEPSGALSILMPSYRRLARPSAPSLGSAAARMNDSLIDAQQSSLGEARRQWEAFAIT
PNGGAAQPNFRKVAAKHGGDVSMFGPRHISNGTTTIHLHNADFYIAGNIGFRVEDLVV
QLVSKRAGEPVDLDDPNQYDIRILSGSVLAPWDAMSDLFNRHLLDYSPRSLNDLKLSA
DGGALRVRGGIKLWNQVPPGVWLPADMKGSLTLLDERHLAFTPTQVSVLGIPQAKLLR
ALGIELSSLAPLKRRGAELRGDSLVLDQYTVFPPPVLIGHMSQATVEPDGLRLTFRPA
PNAPVLRPPANLPGSYLWLEGGDTKMFNVLVLNMRILVEDTAKPRVRFDLYDYRDVVS
RGSVRMVHDGTLYVDVGKKDPLAR"
gene complement(207063..207467)
/locus_tag="BMA10229_A0196"
/db_xref="GeneID:4792046"
CDS complement(207063..207467)
/locus_tag="BMA10229_A0196"
/note="identified by match to protein family HMM PF00376"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_001026199.1"
/db_xref="GI:124385456"
/db_xref="GeneID:4792046"
/translation="MTSTVEKVVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQ
LRPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFTINGARNRLDAVGSERGAPPEPDEL
EQHAAEHAARETVDVAQLRRALLDVIGALKRD"
misc_feature complement(207120..207413)
/locus_tag="BMA10229_A0196"
/note="Helix-Turn-Helix DNA binding domain of putative
MlrA-like transcription regulators; Region:
HTH_MlrA-like_sg2; cd04765"
/db_xref="CDD:133393"
misc_feature complement(207204..207413)
/locus_tag="BMA10229_A0196"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature complement(order(207303..207311,207360..207362,
207402..207410))
/locus_tag="BMA10229_A0196"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133393"
gene complement(207526..207930)
/gene="ihfA"
/locus_tag="BMA10229_A0197"
/db_xref="GeneID:4792569"
CDS complement(207526..207930)
/gene="ihfA"
/locus_tag="BMA10229_A0197"
/note="This protein is one of the two subunits of
integration host factor, a specific DNA-binding protein
that functions in genetic recombination as well as in
transcriptional and translational control"
/codon_start=1
/transl_table=11
/product="integration host factor subunit alpha"
/protein_id="YP_001026200.1"
/db_xref="GI:124384579"
/db_xref="GeneID:4792569"
/translation="MNDMNSSEFEALLTAQRSAMSRDVPASTPAGDTPTLTKAELAEL
LFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGE
AIPIAARRVVTFHASQKLKALVENGAEPDLAR"
misc_feature complement(207562..207822)
/gene="ihfA"
/locus_tag="BMA10229_A0197"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature complement(order(207562..207564,207583..207585,
207589..207591,207601..207606,207670..207672,
207685..207690,207697..207711,207721..207726,
207733..207738,207745..207747,207787..207789,
207799..207801,207808..207810,207817..207822))
/gene="ihfA"
/locus_tag="BMA10229_A0197"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
misc_feature complement(order(207577..207579,207586..207588,
207592..207594,207604..207606,207634..207645,
207652..207654,207658..207663,207667..207669,
207679..207681,207688..207693,207697..207699,
207703..207705,207748..207750,207814..207822))
/gene="ihfA"
/locus_tag="BMA10229_A0197"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
gene complement(208003..210435)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/db_xref="GeneID:4793523"
CDS complement(208003..210435)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/EC_number="6.1.1.20"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a tetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 2 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit beta"
/protein_id="YP_001026201.1"
/db_xref="GI:124384513"
/db_xref="GeneID:4793523"
/translation="MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLRPAAPPTEK
IVVGRVLEVVKHPDADKLNVCQVDAGTGATLQIVCGAPNVAPGIKVPVALVGAKLPPA
EEGGAPFAIKLSKLRGVESQGMLCSARELKLSEDHSGLMILPEGTPVGQDIREALNLD
DTVFEIKLTPNKADCLSVFGIARETAAITGAPLAAPDIRPVLAELTETLPVKISAPDL
CGRFSGRVIRGVNARAKTPHWMVERLERAGQRSVSALVDISNYVMFELGRPSHVFDLD
KIHGGIDVRWGKRGESLKLLNGNTIELDETVGVISDGAQVESLAGIMGGDSTAVTLDT
TNIYLEAAFWWPDSIRGRARKYNFSTDAAHRFERGVDYSTTVEHVERITQLILDICGG
QAGPVDDQIVSLPQRAPVSMRASRANRIIGVEIGEDEIAQIFTRLGLAFERDGDVFRV
TPPPHRFDIEIEEDLIEEVARIYGFEKIPARPPVAKSEMRATDETRRSVHAIRHALAA
RDYAETVNFSFVDAEWERDFAGNDNPVRLLNPIASQLSVMRTTLFGSLVGVLRHNLNR
RAERVRVFEAGRVFVADPSVKAGELAVEGYAQPKRIGALAYGPVVEEQWGTATRQVDY
FDVKGDLEALLAPVPARFVKAEHPALHPGRSARIEVDGHAVGWIGELHPRLMQKYELP
HAPVMFEIDTDALVARALPAPSEVSKFPPVRRDIAVVVDQKVEVQALFDEMKKALADD
ACKFVQRVALFDEFRAKSNTSGGLSAHEKSLAFRVTLQDAAGTLQDETVDQAIQTLVD
RMARVYGARLRG"
misc_feature complement(208006..210435)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="phenylalanyl-tRNA synthetase subunit beta;
Reviewed; Region: pheT; PRK00629"
/db_xref="CDD:234804"
misc_feature complement(209977..210303)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="tRNA-binding-domain-containing prokaryotic
phenylalanly tRNA synthetase (PheRS) beta chain. PheRS
aminoacylate phenylalanine transfer RNAs (tRNAphe).
PheRSs belong structurally to class II aminoacyl tRNA
synthetases (aaRSs) but, as they aminoacylate...; Region:
tRNA_bind_bactPheRS; cd02796"
/db_xref="CDD:239196"
misc_feature complement(order(210064..210066,210073..210075,
210094..210096,210151..210153,210214..210216,
210253..210255))
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:239196"
misc_feature complement(209263..209736)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="B3/4 domain; Region: B3_4; pfam03483"
/db_xref="CDD:202662"
misc_feature complement(209011..209214)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="tRNA synthetase B5 domain; Region: B5; smart00874"
/db_xref="CDD:197942"
misc_feature complement(208351..208935)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="Phenylalanyl-tRNA synthetase (PheRS) beta chain
core domain. PheRS belongs to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure. While class
II aaRSs generally aminoacylate the 3'-OH ribose of the
appropriate tRNA, PheRS is an...; Region:
PheRS_beta_core; cd00769"
/db_xref="CDD:238392"
misc_feature complement(order(208546..208548,208642..208644,
208690..208692,208696..208698,208702..208704,
208717..208719,208747..208749,208789..208791,
208822..208833,208885..208893,208897..208899,
208903..208905,208915..208917,208924..208926))
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238392"
misc_feature complement(208885..208905)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="motif 1; other site"
/db_xref="CDD:238392"
misc_feature complement(208762..208773)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="motif 3; other site"
/db_xref="CDD:238392"
misc_feature complement(208690..208698)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="motif 2; other site"
/db_xref="CDD:238392"
misc_feature complement(208009..208317)
/gene="pheT"
/locus_tag="BMA10229_A0198"
/note="Ferredoxin-fold anticodon binding domain; Region:
FDX-ACB; smart00896"
/db_xref="CDD:214893"
gene complement(210523..211545)
/gene="pheS"
/locus_tag="BMA10229_A0199"
/db_xref="GeneID:4793457"
CDS complement(210523..211545)
/gene="pheS"
/locus_tag="BMA10229_A0199"
/EC_number="6.1.1.20"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a heterotetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 1 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit alpha"
/protein_id="YP_001026202.2"
/db_xref="GI:162320520"
/db_xref="GeneID:4793457"
/translation="MGSMDLDQIVADAQQSFEGAADITTLENEKARFLGKSGALTELL
KGLGKLDPETRKTEGARINVAKQQVEAALNARRQALADALLNQRLAAEAIDVTLPGRG
AGAGSLHPVMRTWERVEQIFRSIGFDVADGPEIETDWYNFTALNSPENHPARSMQDTF
YVDGKDADGRPLLLRTHTSPMQVRYARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVE
GLWIDENVSFADLKGAYTDFLKKFFERDDILVRFRPSYFPFTEPSAEIDMMFEHGKNA
GKWLEISGSGQVHPTVIRNMGLDPERYIGFAFGSGLERLTMLRYGVQDLRLFFENDLR
FLRQFA"
misc_feature complement(210529..211536)
/gene="pheS"
/locus_tag="BMA10229_A0199"
/note="phenylalanyl-tRNA synthetase subunit alpha;
Validated; Region: pheS; PRK00488"
/db_xref="CDD:234780"
misc_feature complement(211276..211494)
/gene="pheS"
/locus_tag="BMA10229_A0199"
/note="Aminoacyl tRNA synthetase class II, N-terminal
domain; Region: Phe_tRNA-synt_N; pfam02912"
/db_xref="CDD:111764"
misc_feature complement(210544..211221)
/gene="pheS"
/locus_tag="BMA10229_A0199"
/note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain
catalytic core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its structure
and the presence of three characteristic sequence motifs.
This domain is primarily responsible...; Region:
PheRS_alpha_core; cd00496"
/db_xref="CDD:238277"
misc_feature complement(order(210547..210555,210559..210561,
210676..210681,210751..210753,210757..210765,
210784..210786,210847..210852,210856..210864,
210913..210915,210934..210936,210940..210942,
210946..210948,210952..210954,210964..210972,
210991..210993,211054..211071,211081..211083,
211096..211098,211147..211155,211159..211164,
211177..211179,211198..211203,211210..211212,
211219..211221))
/gene="pheS"
/locus_tag="BMA10229_A0199"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238277"
misc_feature complement(211147..211167)
/gene="pheS"
/locus_tag="BMA10229_A0199"
/note="motif 1; other site"
/db_xref="CDD:238277"
misc_feature complement(order(210571..210573,210604..210606,
210613..210624,210688..210705,210766..210771,
210775..210777,210892..210894,210898..210900,
210904..210906,210913..210921,210931..210933,
210937..210939,211000..211002,211009..211011,
211015..211017,211075..211083))
/gene="pheS"
/locus_tag="BMA10229_A0199"
/note="active site"
/db_xref="CDD:238277"
misc_feature complement(210931..210942)
/gene="pheS"
/locus_tag="BMA10229_A0199"
/note="motif 2; other site"
/db_xref="CDD:238277"
misc_feature complement(210604..210621)
/gene="pheS"
/locus_tag="BMA10229_A0199"
/note="motif 3; other site"
/db_xref="CDD:238277"
gene complement(211685..212044)
/gene="rplT"
/locus_tag="BMA10229_A0200"
/db_xref="GeneID:4793970"
CDS complement(211685..212044)
/gene="rplT"
/locus_tag="BMA10229_A0200"
/note="binds directly to 23S ribosomal RNA prior to in
vitro assembly of the 50S ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_001026203.1"
/db_xref="GI:124383575"
/db_xref="GeneID:4793970"
/translation="MPRVKRGVTARARHKKIINLAKGYRGRRNNVYRIAKQAVMRAGQ
YAYRDRRNKKRVFRALWITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFD
KAAFAAIVKQVKAAVAA"
misc_feature complement(211739..212029)
/gene="rplT"
/locus_tag="BMA10229_A0200"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature complement(order(211763..211771,211793..211795,
211802..211807,211814..211819,211835..211837,
211847..211849,211856..211864,211868..211912,
211919..211924,211934..211939,211946..211957,
211961..211984,211997..212008,212012..212029))
/gene="rplT"
/locus_tag="BMA10229_A0200"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature complement(order(211739..211744,211760..211762,
211769..211780,211895..211897,211904..211909,
211913..211918,211925..211927,211937..211939))
/gene="rplT"
/locus_tag="BMA10229_A0200"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature complement(order(211745..211747,211754..211756,
211763..211765,211835..211837,211841..211846,
211853..211855,211862..211867,211874..211876))
/gene="rplT"
/locus_tag="BMA10229_A0200"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene complement(212465..212935)
/gene="infC"
/locus_tag="BMA10229_A0201"
/db_xref="GeneID:4793935"
CDS complement(212465..212935)
/gene="infC"
/locus_tag="BMA10229_A0201"
/note="identified by match to protein family HMM PF00707;
match to protein family HMM PF05198; match to protein
family HMM TIGR00168"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-3"
/protein_id="YP_001026204.1"
/db_xref="GI:124385465"
/db_xref="GeneID:4793935"
/translation="MRLVGVDGEPIGIVRLAEAFRKSEELDVDLVEIAPQAAPPVCRL
MDYGKFKYQEAKKQHEAKLKQKVIQVKEVKFRPGTDDGDYNVKLRNLVRFLEEGDKTK
ITLRFRGREMAHQEIGMRMLERLRGDLDEVGQVEQMPKMEGRQMIMVLSPKKKK"
misc_feature complement(212471..212932)
/gene="infC"
/locus_tag="BMA10229_A0201"
/note="translation initiation factor IF-3; Region: infC;
TIGR00168"
/db_xref="CDD:129272"
misc_feature complement(212750..212932)
/gene="infC"
/locus_tag="BMA10229_A0201"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature complement(212477..212737)
/gene="infC"
/locus_tag="BMA10229_A0201"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene complement(213039..214946)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/db_xref="GeneID:4792578"
CDS complement(213039..214946)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/EC_number="6.1.1.3"
/note="catalyzes a two-step reaction, first charging a
threonine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; catalyzes the formation
of threonyl-tRNA(Thr) from threonine and tRNA(Thr)"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_001026205.1"
/db_xref="GI:124385818"
/db_xref="GeneID:4792578"
/translation="MVSIRLPDGSVRQYEHPVTVAEVAASIGPGLAKAALGGKLDGEL
VDTSALIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELHPDAQVTIGPVIDNGF
YYDFSYHRPFTPEDLEAIEKRMQELAKRDEPVTRRVVSRDEAVSYFRSIGEKYKAEII
ESIPASDEIKLYSHGSFTDLCRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEQLQRIY
GTAWTRKEDQDAYLHMLEEAEKRDHRKLGKQLDLFHIQEEAPGMVFWHPKGWTLWQQV
EQYMRRRLDAAGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTESEKRDYAIKPMNCP
GHVQVFKHGLRSYRDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQI
NSEAIAFNKLAMSVYEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLE
WEELPGEGAFYGPKIEYHIKDALGRSWQCGTLQLDMMLPERLGAEYVAEDNSRRRPVM
LHRAIVGSMERFLGILIEHHAGAMPVWLAPAHAVVLNIAESQAEYARTVAQSLQKQGL
RVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGVDLGVMPVEAFV
ERLREDIQAFK"
misc_feature complement(213054..214946)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="threonyl-tRNA synthetase; Reviewed; Region: thrS;
PRK00413"
/db_xref="CDD:234752"
misc_feature complement(214761..214943)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is
a class II tRNA synthetase that couples threonine to its
cognate tRNA. In addition to its catalytic and
anticodon-binding domains, ThrRS has an N-terminal TGS
domain, named after the ThrRS, GTPase, and...; Region:
TGS_ThrRS_N; cd01667"
/db_xref="CDD:133437"
misc_feature complement(214296..214442)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; smart00863"
/db_xref="CDD:197931"
misc_feature complement(213333..214226)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is responsible
for the attachment of threonine to the 3' OH group of
ribose of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ThrRS_core;
cd00771"
/db_xref="CDD:238394"
misc_feature complement(order(213390..213392,213399..213404,
213498..213500,213510..213515,213522..213524,
213807..213809,213813..213815,213822..213830,
213843..213851,213855..213857,213861..213863,
213957..213959,213999..214004,214011..214013,
214023..214025,214176..214178,214215..214217))
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="active site"
/db_xref="CDD:238394"
misc_feature complement(order(213450..213452,213456..213458,
213603..213611,213735..213737,213816..213821,
213849..213851,213858..213860,213864..213866,
213903..213911,213915..213923,213930..213935,
213969..213971,213975..213986,213990..213998,
214050..214052,214056..214064,214068..214070,
214074..214079,214089..214094,214137..214139,
214146..214148,214152..214157,214161..214163,
214167..214169,214173..214181,214185..214187,
214203..214205))
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238394"
misc_feature complement(214056..214079)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="motif 1; other site"
/db_xref="CDD:238394"
misc_feature complement(213855..213866)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="motif 2; other site"
/db_xref="CDD:238394"
misc_feature complement(213390..213404)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="motif 3; other site"
/db_xref="CDD:238394"
misc_feature complement(213063..213335)
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="ThrRS Threonyl-anticodon binding domain. ThrRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
ThrRS_anticodon; cd00860"
/db_xref="CDD:238437"
misc_feature complement(order(213123..213125,213129..213131,
213159..213161,213183..213185,213201..213203,
213306..213311))
/gene="thrS"
/locus_tag="BMA10229_A0202"
/note="anticodon binding site; other site"
/db_xref="CDD:238437"
gene complement(215220..215296)
/locus_tag="BMA10229_A0203"
/db_xref="GeneID:4792213"
tRNA complement(215220..215296)
/locus_tag="BMA10229_A0203"
/product="tRNA-Val"
/db_xref="GeneID:4792213"
gene complement(215405..217642)
/locus_tag="BMA10229_A0204"
/db_xref="GeneID:4791442"
CDS complement(215405..217642)
/locus_tag="BMA10229_A0204"
/EC_number="2.7.6.5"
/note="identified by match to protein family HMM PF01842;
match to protein family HMM PF02824; match to protein
family HMM PF04607; match to protein family HMM TIGR00691"
/codon_start=1
/transl_table=11
/product="GTP pyrophosphokinase"
/protein_id="YP_001026206.1"
/db_xref="GI:124385843"
/db_xref="GeneID:4791442"
/translation="MTADSASTAAAPSLDDVLAFVREHAGDARLSSGERLADHAAGTS
TIMQRLNVDPPATQAAALFALAPYLSDPDKQIAEHFGDEVAHLVADVRKLLRLGTVSL
RAAQSAPVDAGRDAQAERRAQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKI
EPPPDVARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRIAKLLDEKRVERE
AYVAGAIERLQHELAAAHIQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIVP
DIKDCYTVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQE
MHRFAEYGIAAHWRYKEAGARGYGGQFSASEKYDEKIAWLRQLLAWKDEIADGGGAEV
SGQQAWAQLREATLDDDHIYVLTPQARVIALPQGATPVDFAYHLHSELGHRCRGARVD
GAMVPLNTQLANGQTVEIVAVKEGGPSRDWLNPQLGYLHSSRARQKVRAWFNAVDQQE
NVAHGRALVEKTLQREGKTSVNLEHLAAKLGFKSPDELFSVVGKEEFSLRNVEQALSD
APAPEPEPEAPANFEKRASGANVAHGASAGVLVVGVDALLTQLARCCRPAPPDPISGF
VTRGKGMSIHRSDCATFRRMAERAPERVLQTTWSADVLGGRGASVYSVDLMIEATDRQ
GLLRDISEVFAREKMNVIGVKTQSRRNAAFMQFTVEVSSASQVQRACTLLGEIQGVVR
AARKA"
misc_feature complement(217091..217591)
/locus_tag="BMA10229_A0204"
/note="HD domain; Region: HD_4; pfam13328"
/db_xref="CDD:205508"
misc_feature complement(215414..217573)
/locus_tag="BMA10229_A0204"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:30665"
misc_feature complement(216620..216973)
/locus_tag="BMA10229_A0204"
/note="Nucleotidyltransferase (NT) domain of RelA- and
SpoT-like ppGpp synthetases and hydrolases; Region:
NT_Rel-Spo_like; cd05399"
/db_xref="CDD:143389"
misc_feature complement(order(216623..216628,216650..216652,
216656..216658,216662..216664,216698..216700,
216710..216712,216716..216718,216722..216724,
216737..216739,216743..216745,216827..216829,
216839..216844,216905..216907,216911..216913))
/locus_tag="BMA10229_A0204"
/note="synthetase active site [active]"
/db_xref="CDD:143389"
misc_feature complement(order(216626..216628,216656..216658,
216662..216664,216698..216700,216710..216712,
216716..216718,216722..216724,216737..216739,
216743..216745,216911..216913))
/locus_tag="BMA10229_A0204"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143389"
misc_feature complement(order(216662..216664,216842..216844))
/locus_tag="BMA10229_A0204"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143389"
misc_feature complement(216236..216412)
/locus_tag="BMA10229_A0204"
/note="TGS_RelA_SpoT: The RelA (SpoT) protein, also
referred to as ppGpp hydrolase/synthetase, is a
ribosome-associated protein that is activated during amino
acid starvation and thought to mediate the stringent
response. RelA contains a TGS domain, named after...;
Region: TGS_RelA_SpoT; cd01668"
/db_xref="CDD:133438"
misc_feature complement(215414..215623)
/locus_tag="BMA10229_A0204"
/note="ACT domain found C-terminal of the RelA/SpoT
domains; Region: ACT_RelA-SpoT; cd04876"
/db_xref="CDD:153148"
gene complement(217687..218040)
/locus_tag="BMA10229_A0205"
/db_xref="GeneID:4792238"
CDS complement(217687..218040)
/locus_tag="BMA10229_A0205"
/note="identified by match to protein family HMM PF01042"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026207.1"
/db_xref="GI:124385113"
/db_xref="GeneID:4792238"
/translation="MAVTRHHVGPRLSEIAIHNGTVYLAGQIAEDTAQDIKGQTREVL
AHVDRLLAEANSDKAHLLSVQIFISDMANFPGMNEVWDAWVAHGATPPRATVEAKLAN
PACLVEVVVVAAQRG"
misc_feature complement(217699..218013)
/locus_tag="BMA10229_A0205"
/note="This group of proteins belong to a large family of
YjgF/YER057c/UK114-like proteins present in bacteria,
archaea, and eukaryotes with no definitive function. The
conserved domain is similar in structure to chorismate
mutase but there is no sequence...; Region:
YjgF_YER057c_UK114_like_2; cd06150"
/db_xref="CDD:100007"
misc_feature complement(order(217705..217707,217711..217713,
217717..217719,217747..217773,217786..217788,
217798..217800,217807..217809,217840..217842,
217846..217848,217852..217857,217861..217863,
217963..217968,217972..217974,217978..217980,
217987..217989,217993..217995,218002..218007))
/locus_tag="BMA10229_A0205"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100007"
misc_feature complement(order(217717..217719,217762..217764,
217807..217809,217819..217821,218005..218007))
/locus_tag="BMA10229_A0205"
/note="putative active site [active]"
/db_xref="CDD:100007"
gene complement(218114..219250)
/locus_tag="BMA10229_A0206"
/db_xref="GeneID:4792975"
CDS complement(218114..219250)
/locus_tag="BMA10229_A0206"
/note="identified by match to protein family HMM PF00561"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_001026208.1"
/db_xref="GI:124384119"
/db_xref="GeneID:4792975"
/translation="MRLRRESMRPAHDCRNGLLARFGIGIDRAGRPASRDRPFGRPAA
RDEAVYNRLMCSAARRHRGAERSTTPIVRQDAPMSSNPATSVSPRERRVQCANPLGLH
HIAYTEWGDPANPRVLVCVHGLTRSGRDFDRLAAALSDVYRVVCPDVAGRGRSDWLAD
PKRYAVPQYVSDIVTLIARLDVERVDWFGTSMGGLIGLALGGLPGTPIGRMLVNDIGP
HIEPAALERIGEYVGLDKRFATEQEGVDYLTSLSLSFGPLTPDEWRALNRPLLVRDAD
GSWRARYDPRIAEPFKTATPEANAQGEAWLWHALGAFAGPLLVVRGAQSDLLSRETLE
AMKARGQAVTSVEIAEAGHAPAFVSAEQIAIARQFFVGDAPHAS"
misc_feature complement(218720..218947)
/locus_tag="BMA10229_A0206"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
misc_feature complement(218159..218899)
/locus_tag="BMA10229_A0206"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene complement(219477..219647)
/locus_tag="BMA10229_A0207"
/db_xref="GeneID:4790839"
CDS complement(219477..219647)
/locus_tag="BMA10229_A0207"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026209.1"
/db_xref="GI:124386273"
/db_xref="GeneID:4790839"
/translation="MIRTSPRTTSPNSFDASWWASIMPPSPRRRSGSARTSRVFRRLA
ERIAERVGKAAG"
gene complement(220346..221251)
/locus_tag="BMA10229_A0208"
/db_xref="GeneID:4791764"
CDS complement(220346..221251)
/locus_tag="BMA10229_A0208"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_001026210.1"
/db_xref="GI:124386275"
/db_xref="GeneID:4791764"
/translation="MLIDDLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLET
RLGVRLLQRTTRQQTLTDEGALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPG
ELGRRRIAPIVAAFQRQHPQVTVQMQLTDAVVDLIAHDVDVAVRIGMLADSSLIAREL
APNYRVLCASPAYLAEHGMPAQPADLCAHRCIVLGEQPRVEWRFDGPHPAAVEVSAAF
LTNDGGAARTLALEGAGIALKSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRH
LALRVRTFVDYLGVELRRAWRWDER"
misc_feature complement(<221108..221230)
/locus_tag="BMA10229_A0208"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(220364..221227)
/locus_tag="BMA10229_A0208"
/note="transcriptional activator TtdR; Provisional;
Region: PRK09801"
/db_xref="CDD:182085"
misc_feature complement(220388..220972)
/locus_tag="BMA10229_A0208"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(220451..220453,220532..220534,
220583..220585,220763..220765,220769..220771,
220811..220813,220928..220930,220940..220942))
/locus_tag="BMA10229_A0208"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(220556..220558,220565..220570,
220589..220603,220682..220684,220865..220885,
220889..220891,220901..220903,220910..220915,
220919..220924,220934..220939))
/locus_tag="BMA10229_A0208"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene 221439..221996
/locus_tag="BMA10229_A0209"
/db_xref="GeneID:4791766"
CDS 221439..221996
/locus_tag="BMA10229_A0209"
/note="identified by match to protein family HMM PF07366"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026211.1"
/db_xref="GI:124385543"
/db_xref="GeneID:4791766"
/translation="MPALFRRRPLAAIRAAAALSLAATLAPAHADTTGLIEPAHLSVD
GSLPAVQRDAQILAARRYDTFWHNGDPALARAALADDFADRTPPPGRAPGLAGPLAAS
RTMRAAIPDLSCEIEQMIVAGERVVVHLRFRGHFTGRFGPVQGKGQAIDFIATDIYRI
ERGRIAENWHIEDNLTLLRELGIAA"
misc_feature 221604..221981
/locus_tag="BMA10229_A0209"
/note="SnoaL-like polyketide cyclase; Region: SnoaL;
pfam07366"
/db_xref="CDD:203623"
gene 222011..223111
/locus_tag="BMA10229_A0210"
/db_xref="GeneID:4792477"
CDS 222011..223111
/locus_tag="BMA10229_A0210"
/note="identified by match to protein family HMM PF01522"
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase"
/protein_id="YP_001026212.1"
/db_xref="GI:124383994"
/db_xref="GeneID:4792477"
/translation="MTTNMSDAAGAPAASFAPERRAFLARASGGLGLAAAGLALGAAA
APGRALAAGATATADTGAASPAGGSPRRSPADEPEAAHGAFWPNGARLVISISMQFEA
GGQPPTGADSPFPPVDFPPQVPVDLASATWFAYGYREGIPRMLDLWDRHGVKVTSHMI
GEAVHRRPDLAREIVARGHEAAGHGPRWSAQYALPRDEERRFLIAAREMVETATGTRP
VGYNCNWLRRGPNTLPLLQELGYLYHIDDVSRDEPFIEQVNGQDFVVVPYTLRNNDIL
LIEGRNYSPGQFLEQIKLDFDQLYDEAATRRRMMSISAHDRISGTPQMVRAWDAFLRY
AQSHPGVAFMRKDDIARHARRSPLTLREPETL"
misc_feature 222263..223081
/locus_tag="BMA10229_A0210"
/note="Catalytic NodB homology domain of the carbohydrate
esterase 4 superfamily; Region: CE4_SF; cl15692"
/db_xref="CDD:213138"
misc_feature 222266..223066
/locus_tag="BMA10229_A0210"
/note="putative urate catabolism protein; Region:
uraD_N-term-dom; TIGR03212"
/db_xref="CDD:211797"
gene 223155..223877
/locus_tag="BMA10229_A0211"
/db_xref="GeneID:4791076"
CDS 223155..223877
/locus_tag="BMA10229_A0211"
/note="identified by match to protein family HMM PF00106;
match to protein family HMM PF01370; match to protein
family HMM PF08659"
/codon_start=1
/transl_table=11
/product="short chain dehydrogenase"
/protein_id="YP_001026213.1"
/db_xref="GI:124383490"
/db_xref="GeneID:4791076"
/translation="MQASFNDQRVLVIGGSSGIGAAAAHAFAVLDADVTIASRDANKL
AGAARAIDGPRPVRQAVLDTTDAPAVDAFFAEAGPFDHVVMSAAHTPGGPVRKLPLAD
AQAAMNSKFWGAYRVARAARIAPGGSLTFVSGFLSVRPSASAVLQGAINAALEALARG
LALELAPVRVNTVSPGLVATPLWSKLDDAAREAMYASAAARLPARRVGQPEDVANAIV
YLAATRYATGSTVLVDGGGAIA"
misc_feature 223257..223874
/locus_tag="BMA10229_A0211"
/note="short chain dehydrogenase; Provisional; Region:
PRK07041"
/db_xref="CDD:180804"
misc_feature 223341..223856
/locus_tag="BMA10229_A0211"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature order(223410..223418,223548..223556,223593..223595,
223605..223607,223677..223688)
/locus_tag="BMA10229_A0211"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(223482..223484,223554..223556,223593..223595,
223605..223607)
/locus_tag="BMA10229_A0211"
/note="active site"
/db_xref="CDD:187535"
gene complement(224281..224922)
/locus_tag="BMA10229_A0212"
/db_xref="GeneID:4793850"
CDS complement(224281..224922)
/locus_tag="BMA10229_A0212"
/note="identified by match to protein family HMM PF01144;
match to protein family HMM TIGR02428"
/codon_start=1
/transl_table=11
/product="3-oxoacid CoA-transferase subunit B"
/protein_id="YP_001026214.1"
/db_xref="GI:124384873"
/db_xref="GeneID:4793850"
/translation="MAWNRDQMAARAAKELQDGFYVNLGIGLPTLVANHVPAGVEVWL
QSENGLLGIGPSPTEDEVDADLINAGKQTVTTLPGSSIFSSADSFAMIRGGHINLAIL
GAMQVSQRGDLANWMIPGKMIKGMGGAMDLVAGVKRVVVLMEHVAKGDQHKILEQCTL
PLTGVGVVDLIITDLGVIEVTPNGLKVLELADGVTVDEIQTKTGAPLDVSALA"
misc_feature complement(224296..224916)
/locus_tag="BMA10229_A0212"
/note="3-oxoacid CoA-transferase, B subunit; Region:
pcaJ_scoB_fam; TIGR02428"
/db_xref="CDD:188219"
gene complement(224924..225628)
/locus_tag="BMA10229_A0213"
/db_xref="GeneID:4793276"
CDS complement(224924..225628)
/locus_tag="BMA10229_A0213"
/EC_number="2.8.3.-"
/note="identified by match to protein family HMM PF01144;
match to protein family HMM TIGR02429"
/codon_start=1
/transl_table=11
/product="3-oxoacid CoA-transferase subunit A"
/protein_id="YP_001026215.1"
/db_xref="GI:124385476"
/db_xref="GeneID:4793276"
/translation="MNKVYPSAAAALEGVVHDGQTFAVGGFGLCGIPEALIAALRDSA
VKGITCISNNAGVDGFGLGLLLETRQIKKMISSYVGENKEFERQYLSGELELEFTPQG
TLAEKLRAGGAGIPAFFTQTGYGTVIAEGKETREFDGKHYVLEPSLTADVALVKAWKA
DKSGNLVYRRTARNFNPMCAMAGRITIAEVEEIVENGELDPDAIHTPGIFVQRLVLNA
TPEKRIEQRVVRAKGD"
misc_feature complement(224969..225628)
/locus_tag="BMA10229_A0213"
/note="Acyl CoA:acetate/3-ketoacid CoA transferase, alpha
subunit [Lipid metabolism]; Region: AtoD; COG1788"
/db_xref="CDD:224702"
gene 225881..226426
/locus_tag="BMA10229_A0214"
/db_xref="GeneID:4792589"
CDS 225881..226426
/locus_tag="BMA10229_A0214"
/note="identified by match to protein family HMM PF00196;
match to protein family HMM PF08448"
/codon_start=1
/transl_table=11
/product="LuxR family transcriptional regulator"
/protein_id="YP_001026216.1"
/db_xref="GI:124384920"
/db_xref="GeneID:4792589"
/translation="MPAIDYKTAFHLAPIGLVLSRDRVIEDCNDELAAIFRCARADLI
GRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRALDRTA
PLAAGVWTFEDLSATRRVAVELTPREREIAAQLVTGKTSKQIGRVLDISSRTVDIYRA
RLMRKYGTGNTAELLQRLLGQ"
misc_feature 225929..226228
/locus_tag="BMA10229_A0214"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:222120"
misc_feature 225929..226180
/locus_tag="BMA10229_A0214"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:238075"
misc_feature order(225962..225964,225974..225976,225992..225994,
226028..226039,226121..226123,226136..226138)
/locus_tag="BMA10229_A0214"
/note="putative active site [active]"
/db_xref="CDD:238075"
misc_feature order(226031..226033,226061..226063,226070..226075,
226157..226159,226163..226165)
/locus_tag="BMA10229_A0214"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:238075"
misc_feature 226250..226405
/locus_tag="BMA10229_A0214"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(226253..226261,226298..226306,226328..226333,
226337..226342,226346..226360,226391..226393)
/locus_tag="BMA10229_A0214"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(226286..226288,226292..226294,226298..226300,
226391..226399)
/locus_tag="BMA10229_A0214"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 226997..228529
/locus_tag="BMA10229_A0215"
/db_xref="GeneID:4793142"
CDS 226997..228529
/locus_tag="BMA10229_A0215"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026217.1"
/db_xref="GI:124383990"
/db_xref="GeneID:4793142"
/translation="MINAKTGFLFFIFVMSLIGCRPAFAQTNTPVTGIDLGGEIIEII
KQNPQDPTQAINNYMSGVAATNVRWVRIHLDWSAIQPASTWIFTSDPNPGRSSGLTWG
ATDIVVRAARNYGIRILGVITSTPRWATHAQCPSYYRQSTDDAYKLCAPNLTSYTNFA
RAAAKHYGNDSYGGKIDAWEIWNEPNCGPNFIPHDPVLYTRLVKSAYPAIKQANPSAS
VYAGGSSGCLTSPNNGTGALPSSGVAGLVNSTDARYPAPTQWEPRDWLAVMYANGASG
YFDGLAHYPHCHSDDWQLPGDQCPSTTVNSVYPDYSNPFNIMWHTFASPSYGWPAPTG
KTFASYTGTSLRELMNANGDGGKPIVITEFGVATTASDGATDFTGQLGGSAQQYANAD
FQTIAPAYLTQANQEREYKALIAWIANQPYGQYGPVYAYCYSDMALSSPYSANIYEPY
FGLVTITASTATSGTTGAPKIAGAYQAASGQYYPAWPNFGAAATAAANHTPGYAPVGP
GW"
gene 229458..230531
/locus_tag="BMA10229_A0216"
/db_xref="GeneID:4791072"
CDS 229458..230531
/locus_tag="BMA10229_A0216"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026218.1"
/db_xref="GI:124383974"
/db_xref="GeneID:4791072"
/translation="MAKLAASNQFGIPNQTDVFAVDGNGSLRVSWVVSAGAWNGPAQI
GPAGLFPSRAAVASSNQFGIPNQTDVFAVGRDGAQNVAWVVSADRWNGPTPISAAGLF
PAGAAIAASNQFGIPNQTDVFAVSDSGALNVAWVVSAERWNGPIPISAAGHFPAGAPL
ATSNQFGIPNQTDVFVVDNKGALNVAWVVGAGSWNGPIPISPPGLFPPGAAVAASNQF
GIPNQTDVFVVDNQGALNVAWVVGADRWNGPVPISPAGLFPPGAAVAASNQFGIPNQT
DVFAVGRDGALRVAWVVSAGNWNGPVSISPTNLFPAGAAVAASNQFGIPNQTDVFAAD
SDGVLHVAWVVSAGNWNGPISIA"
gene complement(230907..231338)
/locus_tag="BMA10229_A0217"
/db_xref="GeneID:4791055"
CDS complement(230907..231338)
/locus_tag="BMA10229_A0217"
/note="identified by match to protein family HMM PF03061"
/codon_start=1
/transl_table=11
/product="thioesterase"
/protein_id="YP_001026219.1"
/db_xref="GI:124386016"
/db_xref="GeneID:4791055"
/translation="MSDYTPVFEMSMPIRWGDMDAFGHVNNTVYFRYMEEARVTWFGK
LGIGGGNGEGQGPVVVNASMEFLRQLHYPGDVIARLSAAKPGRSSFDTAFELTRSDDP
ERVYARGAARCVWVDYALGKSVPLPDLLRNTIESALQAKVD"
misc_feature complement(230988..231317)
/locus_tag="BMA10229_A0217"
/note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes
the final step in the 4-chlorobenzoate degradation pathway
in which 4-chlorobenzoate is converted to
4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT
forms a homotetramer with four active sites; Region: 4HBT;
cd00586"
/db_xref="CDD:48031"
misc_feature complement(order(231072..231083,231162..231164,
231168..231170,231234..231236))
/locus_tag="BMA10229_A0217"
/note="active site"
/db_xref="CDD:48031"
gene complement(231383..232162)
/locus_tag="BMA10229_A0218"
/db_xref="GeneID:4792049"
CDS complement(231383..232162)
/locus_tag="BMA10229_A0218"
/note="identified by match to protein family HMM PF00106;
match to protein family HMM PF01370; match to protein
family HMM PF08659"
/codon_start=1
/transl_table=11
/product="short chain dehydrogenase"
/protein_id="YP_001026220.1"
/db_xref="GI:124385071"
/db_xref="GeneID:4792049"
/translation="MGRSINLEGKVALITGASSGLGQRFAQVLSQAGAKVVLASRRVE
RLKELRAEIEAAGGAAHVVSLDVTDYQSIRAAVAHAETEAGTIDILVNNSGVSTMQKL
VDVSPADFEYVFDTNTRGAFFVAQEVAKRMMMRAGSGNAKPACRIINIASVAGLRPFS
QIGLYAMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHYLWETEQGQKLQSM
LPRRRVGKPQDLDGLLLLLAADESQFINGSIVSADDGLGLA"
misc_feature complement(231392..232162)
/locus_tag="BMA10229_A0218"
/note="short chain dehydrogenase; Provisional; Region:
PRK06949"
/db_xref="CDD:180773"
misc_feature complement(231404..232129)
/locus_tag="BMA10229_A0218"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature complement(order(231560..231565,231569..231580,
231656..231658,231668..231670,231707..231715,
231815..231817,231878..231886,231962..231970,
232037..232045,232100..232111,232115..232117))
/locus_tag="BMA10229_A0218"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature complement(order(231656..231658,231668..231670,
231707..231709,231812..231814))
/locus_tag="BMA10229_A0218"
/note="active site"
/db_xref="CDD:212491"
gene 232343..234016
/locus_tag="BMA10229_A0219"
/db_xref="GeneID:4792932"
CDS 232343..234016
/locus_tag="BMA10229_A0219"
/note="identified by match to protein family HMM PF01266;
match to protein family HMM PF05187"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein-ubiquinone
oxidoreductase"
/protein_id="YP_001026221.1"
/db_xref="GI:124384177"
/db_xref="GeneID:4792932"
/translation="MTPASLIEQYGPRESMEYDVVIVGGGPAGLSAAIRLKQLAAEKG
AEIGVCVLEKGSEIGAHILSGAVMDPRAITELFPDWKEKGAPLNVDVTEDRFLFLTEK
SSFQVPNWALPDNFKNHGNYVISLGNVTRWLGQQAEALGVEIFPGFPAAEILYNDDGS
VKGVATGNMGVGKDGEPTENFQLGMELHAKYTLFCEGARGHLGRQLMDKFKLNANSDP
QAYGIGIKELWEIDPVKHKPGLVIHTAGWPLSSDTYGGSFLYHMDNNQVVVGFVVGLA
YSNPYLSPFEEFQRYKTHPAIRPFLEGGKRVSYGARAITAGGLLSLPKTVFPGGALVG
DDAGFLNASRIKGSHAAIKTGMLAAEAAFDAVQAGRQADELTAYPDAFKTSWLHTELY
RARNFKQWMGKGLYLGTLMVGVEQKLMNGNVPWTLHHQHGDHEMLKPASQCQPIDYPK
PDGKLTFDRLSSVFISNTNHEENQPAHLTLKDASVPVNVNLRTYAGPEARFCPAAVYE
FVKNDDGSDRLVINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGPNYPNM"
misc_feature 232382..>232567
/locus_tag="BMA10229_A0219"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 232385..233752
/locus_tag="BMA10229_A0219"
/note="Dehydrogenases (flavoproteins) [Energy production
and conversion]; Region: FixC; COG0644"
/db_xref="CDD:30989"
misc_feature 233552..233881
/locus_tag="BMA10229_A0219"
/note="Electron transfer flavoprotein-ubiquinone
oxidoreductase; Region: ETF_QO; pfam05187"
/db_xref="CDD:203194"
misc_feature <233771..234004
/locus_tag="BMA10229_A0219"
/note="Ferredoxin-like protein [Energy production and
conversion]; Region: FixX; COG2440"
/db_xref="CDD:32561"
gene 234623..234886
/locus_tag="BMA10229_A0220"
/db_xref="GeneID:4790897"
CDS 234623..234886
/locus_tag="BMA10229_A0220"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfA"
/protein_id="YP_001026222.1"
/db_xref="GI:124386200"
/db_xref="GeneID:4790897"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLAEAMLDMEALKVVVKGKP"
misc_feature 234626..234823
/locus_tag="BMA10229_A0220"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 234910..235743
/locus_tag="BMA10229_A0221"
/db_xref="GeneID:4791872"
CDS 234910..235743
/locus_tag="BMA10229_A0221"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfB"
/protein_id="YP_001026223.1"
/db_xref="GI:124385270"
/db_xref="GeneID:4791872"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature 234967..235683
/locus_tag="BMA10229_A0221"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature 235012..235182
/locus_tag="BMA10229_A0221"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature 235228..235566
/locus_tag="BMA10229_A0221"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 235477..235677
/locus_tag="BMA10229_A0221"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(235754..236290)
/locus_tag="BMA10229_A0222"
/db_xref="GeneID:4792769"
CDS complement(235754..236290)
/locus_tag="BMA10229_A0222"
/codon_start=1
/transl_table=11
/product="histidinol-phosphate aminotransferase"
/protein_id="YP_001026224.1"
/db_xref="GI:124383894"
/db_xref="GeneID:4792769"
/translation="MRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLA
GLRLGALFGPSELIAAMKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRV
ADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGR
EEDNDRFDLPPSIGPMGF"
misc_feature complement(235790..>236266)
/locus_tag="BMA10229_A0222"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature complement(order(236174..236176,236183..236185,
236249..236251,236258..236260))
/locus_tag="BMA10229_A0222"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature complement(236174..236176)
/locus_tag="BMA10229_A0222"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(236318..236764)
/locus_tag="BMA10229_A0223"
/db_xref="GeneID:4791156"
CDS complement(236318..236764)
/locus_tag="BMA10229_A0223"
/codon_start=1
/transl_table=11
/product="NikT protein"
/protein_id="YP_001026225.1"
/db_xref="GI:124386212"
/db_xref="GeneID:4791156"
/translation="MSVGEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAARI
NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEFSSMRFVTAWPGFDGY
RARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTG"
misc_feature complement(<236321..236698)
/locus_tag="BMA10229_A0223"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature complement(order(236342..236344,236525..236527,
236534..236539))
/locus_tag="BMA10229_A0223"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
gene complement(236826..237887)
/locus_tag="BMA10229_A0224"
/db_xref="GeneID:4791884"
CDS complement(236826..237887)
/locus_tag="BMA10229_A0224"
/note="identified by match to protein family HMM PF02373"
/codon_start=1
/transl_table=11
/product="JmjC domain-containing protein"
/protein_id="YP_001026226.1"
/db_xref="GI:124385738"
/db_xref="GeneID:4791884"
/translation="MRASIRSGWTGEAFPPVGKRSANLRRSNSVCNASSNSGRTWCLP
ASASISINIRARESTMPYDEILPIETLVRPKVSDFREHYLEKERPVKIARALDAWPAM
QKWSLDYFENRFGDETIGVESFQPDERGPGNNSPQGYVKHLRFQELKLKELIRILRTK
PDHMYYMASHPFRKSFPNLRADLAPHPYVQGHIEHIPGAHMDSYLWIGPAGTHTPIHT
DPMPNFLTQIVGRKMVYLFPPDQASKNLYIGQFERETFSPVDLEKPDLERYPNYRHCT
PYQAIIEPGETLHIPRNWGHCVISMDISISISTFFITYPQLFRLVPEFFTQYVKRAFE
GWRWKGMENERAGLNPPPR"
misc_feature complement(237000..237659)
/locus_tag="BMA10229_A0224"
/note="Cupin-like domain; Region: Cupin_8; pfam13621"
/db_xref="CDD:205799"
gene 239090..240787
/locus_tag="BMA10229_A0226"
/db_xref="GeneID:4792312"
CDS 239090..240787
/locus_tag="BMA10229_A0226"
/note="identified by match to protein family HMM PF00550;
match to protein family HMM PF00975"
/codon_start=1
/transl_table=11
/product="peptide synthetase"
/protein_id="YP_001026227.1"
/db_xref="GI:124383366"
/db_xref="GeneID:4792312"
/translation="MRRRASDGGAHHARLACASRCVAARIATRDRPERGPANVHFGGV
PAAADASHASRDSPASARRDARPRPRSRPRSRRAVGRAEHRPGMRIDMQRPPWVLACI
ARIPGSGQWLLRLVAAPIAAGFDALDALLREAVIHGDREPGPAPFHWTVETAVESCGG
EPASLPTAGAVWPSNDVSRACDPDAASCVEARIAAIASDLPGVVHGGLRDDLRALGRT
PLQALRLARRIRDALGVTVPVESILASPTIVELAGYVEQLRSRDVRDGAAPVSIGETP
ADADARAQAQADTVHTDCLIVIQAGGAEQAPVFCIPGAGGSVASFVALASMLRADIPV
YGLQPRGLDGLGPPDRSVEAAARRYARAILDATPPGPPRIVGHSFGGWIALETARLLD
GMGTRCAPLVLLDSNPPPASQAWRAPSEADMLRTLVGLLEQAAGGAPSGIGDEEIARC
AAAGEDARDALVHACMVRTALLPPRAPVETVRHLRRVFEAHSSTRYAPGSRYAGDATV
IVANGDRDAGEMVPAFGWAALIERVEVAVTPGNHMSMLAAPYVRHVALTMKAVWRMI"
misc_feature 240008..240754
/locus_tag="BMA10229_A0226"
/note="Thioesterase domains of type I polyketide synthases
or non-ribosomal peptide synthetases [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: COG3319"
/db_xref="CDD:33128"
gene complement(240745..241014)
/locus_tag="BMA10229_A0225"
/db_xref="GeneID:4791289"
CDS complement(240745..241014)
/locus_tag="BMA10229_A0225"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026228.1"
/db_xref="GI:124384273"
/db_xref="GeneID:4791289"
/translation="MSGREACAPDAQALAVARRDRSEAREVSPRRQLGRKRDAAGRAT
TDRRRAGARPASSAGARGATNGHRSAAAAVLIQIMRHTAFIVSAT"
gene complement(241245..242468)
/locus_tag="BMA10229_A0227"
/db_xref="GeneID:4790813"
CDS complement(241245..242468)
/locus_tag="BMA10229_A0227"
/note="identified by match to protein family HMM PF00267"
/codon_start=1
/transl_table=11
/product="outer membrane porin"
/protein_id="YP_001026229.1"
/db_xref="GI:124385521"
/db_xref="GeneID:4790813"
/translation="MSARAARQLPGNRRLARLAGAAAAACAAGFGASTAHAQSSVVLY
GLIDTSITYANNQRTHGAGSPGSPGWAVTSGALNASRWGLRGREDLGDGVSAIFALEN
GFSGASGALSQKGVDMFGRQAWIGLKSKEGGALTLGRQYDLILDFVTPLGASGPGWGG
NLAVHPYDNDDSNRNIRINNAVKYTSPTYRGWTLGAMYGFSNTAGPFGNNAAWSAGLS
YANGPLKLGAGYLRINRNPNAANANGALSTTDGSATITGGSQQIWAVAGRYAFGPHSI
GAAWSHSATDRVSGVLQGGSIAKLDGKSLVFDNFTLDGRYVVTPRLSLAAAYTYTMGR
FDARSGETRPKWNHMVAQADYAFSIRTDAYLEAVYQRVSGGNGIPAFNATIWTLTPSA
NGNQVVVALGLRHRF"
misc_feature complement(241248..242354)
/locus_tag="BMA10229_A0227"
/note="Porins form aqueous channels for the diffusion of
small hydrophillic molecules across the outer membrane.
Individual 16-strand anti-parallel beta-barrels form a
central pore, and trimerizes thru mainly hydrophobic
interactions at the interface. Trimers...; Region:
gram_neg_porins; cd00342"
/db_xref="CDD:30071"
misc_feature complement(order(241248..241250,241254..241256,
241260..241262,241386..241388,241395..241400,
241929..241934,241938..241940,242052..242060,
242088..242102,242106..242111,242148..242159,
242163..242165,242169..242177,242181..242183,
242199..242213,242316..242324,242328..242330,
242346..242348,242352..242354))
/locus_tag="BMA10229_A0227"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:30071"
misc_feature complement(order(241938..241940,242004..242006,
242106..242108,242226..242228,242331..242333))
/locus_tag="BMA10229_A0227"
/note="eyelet of channel; other site"
/db_xref="CDD:30071"
gene 242816..243616
/locus_tag="BMA10229_A0228"
/db_xref="GeneID:4792454"
CDS 242816..243616
/locus_tag="BMA10229_A0228"
/note="identified by match to protein family HMM PF00165;
match to protein family HMM PF02311"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_001026230.1"
/db_xref="GI:124386228"
/db_xref="GeneID:4792454"
/translation="MHRVTHYRRADDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHR
SWSGCGTVDARAGDTIMVNPGEVHDGLPLGARAARSWRMLYLIPALVAGFAAEEGCGG
VELAHPAVRDARLAAAVERLFARVVAGAQTPAASIACDEALALLVAALLARHASGRAP
RAGSAPAIRIARERLDASPADAVSLAELASLAGVSRFQLLRGFARELGITPHAYLIQS
RARLARALLARGLSIAQAAAEAGFADQSHLTRAFVRQFGITPGRFASR"
misc_feature 242852..243190
/locus_tag="BMA10229_A0228"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature 243362..243604
/locus_tag="BMA10229_A0228"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
gene 243781..244587
/locus_tag="BMA10229_A0230"
/db_xref="GeneID:4791900"
CDS 243781..244587
/locus_tag="BMA10229_A0230"
/note="identified by match to protein family HMM PF00892"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026231.1"
/db_xref="GI:124384829"
/db_xref="GeneID:4791900"
/translation="MKTKLIGYLSLAAAMMGVGSTVVASRIAGDGLPPFTAAALRFLI
ASPLLYALMRAQRLRWPRLAPRELGLLVVQAACGGVGYTVLLIVGTRLSSPVDAGVML
GTLPAMSTLIAAVVLRERQTPRDWGAAALATAGVLLVTLTPGRTTLSTRALAGDALVL
AAVACEAVFILLNRRLAVPLAPLTQSSAMSAAGCVLALAPAAFEWRAATAAAWQPAAL
AAIAYYALVPTVLGYLCWYAGSARTSGTEAALFTAVAPASAVLFAAAAFG"
misc_feature 243835..244158
/locus_tag="BMA10229_A0230"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(244584..244745)
/locus_tag="BMA10229_A0229"
/db_xref="GeneID:4793232"
CDS complement(244584..244745)
/locus_tag="BMA10229_A0229"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026232.1"
/db_xref="GI:124384078"
/db_xref="GeneID:4793232"
/translation="MIAPGGDAHQAASREFAAAASRGRCAPQRGRIAPTSTPATTIAM
PASRVRSSG"
gene complement(244910..245422)
/gene="cheW-1"
/locus_tag="BMA10229_A0231"
/db_xref="GeneID:4790979"
CDS complement(244910..245422)
/gene="cheW-1"
/locus_tag="BMA10229_A0231"
/note="identified by match to protein family HMM PF01584"
/codon_start=1
/transl_table=11
/product="chemotaxis protein CheW"
/protein_id="YP_001026233.1"
/db_xref="GI:124385099"
/db_xref="GeneID:4790979"
/translation="MNAILEAPHAARMSGQDAARDAQEFVTFRLGTEEYGIDILRVQE
IRSYEEPTRIANAPAFIKGVINLRGVIVPIIDLRLKFALDSAEYNTSTVVIVLNVAAR
TVGVVVDAVSDVLELAAADRRPAPEFGAAIDTGFITDLGSIAGENGNRMLILLDIERL
IAAADVGLVG"
misc_feature complement(244916..245398)
/gene="cheW-1"
/locus_tag="BMA10229_A0231"
/note="CheW-like domain. CheW proteins are part of the
chemotaxis signalling mechanism in bacteria. CheW
interacts with the methyl accepting chemotaxis proteins
(MCPs) and relays signals to CheY, which affects flageller
rotation. This family includes CheW and...; Region:
CheW_like; cl00256"
/db_xref="CDD:241730"
gene complement(245460..247202)
/locus_tag="BMA10229_A0232"
/db_xref="GeneID:4792960"
CDS complement(245460..247202)
/locus_tag="BMA10229_A0232"
/note="identified by match to protein family HMM PF00015"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_001026234.1"
/db_xref="GI:124383878"
/db_xref="GeneID:4792960"
/translation="MNFQNMTVSTKLTLAFGALVGLVLLVSVLALHALGDANDRFASY
VSGISARAEAAEQVRTAVDRRAIAARNLVLVTKPADVELEKAAVTQAEDDVQAHLRRL
KELLSSASDGNDKARGLVADIDRVEAQYGPVALAIVNAALNNRHDEAITMMNDQCRPL
LAQLVKATNAYSEYTRGRAQEMVRESADHYASQRLLLVGLCAAAIGAAVIAAILIARG
LMRALGAEPATLGDVTRRVANGDLSPVAGAQTAPSGSVLASMGEMQASLVRLIGQVST
AADSIATGSSQIASGNQDLSSRTEHQASSLQETASSMEELTSTVRQNAENAQQASSLA
ANASEVAQKGSTVVGQVVDTMTDISQSSEKVAEITGIIESIAFQTNILALNAAVEAAR
AGEQGRGFAVVASEVRSLAQRSSSAAKEIKDLINASVQKIHDGSALAGEAGKTMTEVT
QAVARVTDIMGEIAAASGEQSRGIEQVNQAIAQMDEVTQQNAALVEEAAAASKSLEEQ
GRHLTQAVSFFRASAASAAPQARHAAPAKPKAKRGVAAPASAPRAAHAAPTFNKPAPA
LAAAATASDDWQTF"
misc_feature complement(245730..246305)
/locus_tag="BMA10229_A0232"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(245730..245735,245742..245744,
245751..245756,245760..245765,245772..245777,
245781..245786,245793..245795,245802..245807,
245814..245816,245823..245828,245835..245840,
245844..245849,245856..245858,245865..245870,
245877..245879,245886..245891,245928..245933,
245940..245945,245949..245954,245961..245966,
245973..245975,245982..245987,245994..245996,
246003..246005,246015..246017,246036..246038,
246045..246047,246057..246059,246066..246071,
246078..246080,246087..246089,246096..246101,
246108..246113,246120..246122,246129..246134,
246138..246140,246150..246155,246159..246164,
246171..246173,246180..246185,246192..246197,
246204..246206,246213..246218,246225..246227,
246234..246239,246243..246248,246255..246257,
246264..246269,246276..246281))
/locus_tag="BMA10229_A0232"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(245970..246071)
/locus_tag="BMA10229_A0232"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(247915..248103)
/locus_tag="BMA10229_A0233"
/db_xref="GeneID:4791140"
CDS complement(247915..248103)
/locus_tag="BMA10229_A0233"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026235.1"
/db_xref="GI:124385162"
/db_xref="GeneID:4791140"
/translation="MVQNRVDEIVQAIASETHTPAEAVSRLYEEALAEYSEGARVRDY
LTVLVAKRVRETLRNRTH"
misc_feature complement(247918..248103)
/locus_tag="BMA10229_A0233"
/note="Protein of unknown function (DUF3562); Region:
DUF3562; pfam12085"
/db_xref="CDD:152520"
gene 248500..250476
/locus_tag="BMA10229_A0234"
/db_xref="GeneID:4792842"
CDS 248500..250476
/locus_tag="BMA10229_A0234"
/EC_number="2.3.1.86"
/note="activates fatty acids by binding to coenzyme A"
/codon_start=1
/transl_table=11
/product="AMP-binding protein"
/protein_id="YP_001026236.1"
/db_xref="GI:124385883"
/db_xref="GeneID:4792842"
/translation="MAVRDIHDIEQIERVPLHARALPANTLQVFDERAAKTPDAPALT
FFLDAGRLDRSHTWTFAELRADIVRTANVLASVGIGAGDVAAFVLPNLPDTHFAIWGG
EAAGIAMAINPLLDGAQIAELVDAARAKVLICVAPTPGVDIWPKLAPHLDAMPTVETV
IWVDLRPYVSLPKRAALAWIERREKARLRGARVRIVNLHAEMRRQPGDRLIRPRAIGP
DEPSSYFCTGGTTGRPKIAVRTHGSEVFDVWAASETQARDDEGARTVFCGLPLFHVNG
QLVTGLMAWLRGHHVVLGTPQGYRGKNVIARFWAIVEAYRINAFSGVPTLFAALLQQP
VGRHDIGSLEYAACGAAPMPVELARSFERTTGVKIVEGYGLTESACIASLNPLDGERR
IGSIGLRLPYQRMRAVIVDDTGRYVRDALVDEVGLIALAGPNVFRGYLDPAHERGLWI
DIAGERWLNTGDLGRRDAHGYFWLVGRKKELIIRGGHNIDPRIIEDALAAHPAVALAA
AIGRPDAHAGELPVAYVQLKAGASADEAALLAFAADAIAERAAVPKHVRILEAVPTTA
VGKIFKPQLQRLEIADVVAACARDAQVALERVDVVQDARRGLVAQVAVRGAREALAER
LARYAFPVDWSGDGAHARASEAQRDAAAARERAS"
misc_feature 248500..250332
/locus_tag="BMA10229_A0234"
/note="AMP-binding domain protein; Validated; Region:
PRK07529"
/db_xref="CDD:181017"
misc_feature 248674..249987
/locus_tag="BMA10229_A0234"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
gene 250547..251950
/locus_tag="BMA10229_A0235"
/db_xref="GeneID:4792097"
CDS 250547..251950
/locus_tag="BMA10229_A0235"
/note="identified by match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="EmrB/QacA family drug resistance transporter"
/protein_id="YP_001026237.1"
/db_xref="GI:124383837"
/db_xref="GeneID:4792097"
/translation="MRAGDFRVTAAVVASALFMQNLDSTVVATALPSMARELGVNVVF
LSSAITSYLVALTVFIPVSGWIAERFGAKRVFIAAIAIFTAASVMCAAANGLATLVAA
RILQGAGGALMVPVGRLILYRGVSRHEMLAATTWLTMPALVGPLLGPPLGGFLTDALS
WRAVFWINVPVGVAGAALAARLVPASAGERRAPADARGMLLVGAALAALMLGVETAGR
GVLPAGAPALCLGAGVALGGLAIRHCRRVAHPAVDLSLLGIPTFHAATIAGSLFRAGA
GALPFLVPLTLQVGFGASASRSGAITLASALGSLVMRPMTHAALHRAPMRTVLIAGSV
SFAAVLAACATLSPAWPDAAVFALLLVGGLSRSLSFASLGALVFSDVPSERLSAATSF
QGTAQQLMRAVGVAVAAGALHLAMLIGGRGQASRTDFACAFAAIALVVLASVPMFAAL
PADAGEGLAGPARRPRP"
misc_feature 250577..>251050
/locus_tag="BMA10229_A0235"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(250616..250618,250625..250633,250637..250642,
250691..250693,250700..250705,250712..250714,
250724..250729,250733..250738,250874..250879,
250886..250891,250898..250903,250910..250912,
250946..250951,250958..250963,250979..250981)
/locus_tag="BMA10229_A0235"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(252347..253117)
/locus_tag="BMA10229_A0236"
/db_xref="GeneID:4791099"
CDS complement(252347..253117)
/locus_tag="BMA10229_A0236"
/note="identified by match to protein family HMM PF08241;
match to protein family HMM PF08242"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026238.1"
/db_xref="GI:124384877"
/db_xref="GeneID:4791099"
/translation="MSSDPHTAPQSAPQNIYDDASFFEGYRTLRQGDTGLNGALESPA
MKRLLPNLAGLHVLDLGCGFGDFARYARAHGAASVTAVDVSSRMLEEARARTDDGAVT
YLQRSIETYHAATRAFDLVVSSLTLHYVEDYAGVVARIYDALRSNGRFVFSVEHPICT
AYPHGWVRGDDGHKQHWPVDRYRQEGRRDTRWFVDGVVKYHRTVETYVNTLLKAGFTL
THLGEPAPVPDALAVRPDLEAECRRPPVLFLAAVRAGN"
misc_feature complement(252650..252949)
/locus_tag="BMA10229_A0236"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(252746..252748,252794..252802,
252866..252871,252920..252940))
/locus_tag="BMA10229_A0236"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 253490..254428
/locus_tag="BMA10229_A0237"
/db_xref="GeneID:4793099"
CDS 253490..254428
/locus_tag="BMA10229_A0237"
/note="identified by match to protein family HMM PF04069"
/codon_start=1
/transl_table=11
/product="amine ABC transporter periplasmic amine-binding
protein"
/protein_id="YP_001026239.1"
/db_xref="GI:124385402"
/db_xref="GeneID:4793099"
/translation="MKVPRFSRTLRAAAAALAVSLCAAAPGARAAGAVTVASKIDTEG
NLLGNVISQVLKAHGIAVVDKIGLGATPIVRRALTTGEIDIYPEYTGNAAFFFNKADD
PAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVAVLNSIAQARHLKTFSDFGKW
VAAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDTAATIKAAAQQTD
GVNAAMVYGTDGGIAATGLAVLDDDKHVQPVYAPTPIIREAVLNAHPQIADYLKPVFA
SLDLKTLQALNARIQINGEPAAGVAASYLKAKGFVK"
misc_feature 253601..254410
/locus_tag="BMA10229_A0237"
/note="Substrate binding domain of ABC-type glycine
betaine transport system; Region: OpuAC; pfam04069"
/db_xref="CDD:217871"
gene 254425..255645
/locus_tag="BMA10229_A0238"
/db_xref="GeneID:4792708"
CDS 254425..255645
/locus_tag="BMA10229_A0238"
/note="identified by match to protein family HMM PF00528"
/codon_start=1
/transl_table=11
/product="amine ABC transporter permease"
/protein_id="YP_001026240.1"
/db_xref="GI:124386299"
/db_xref="GeneID:4792708"
/translation="MTPRTAGGAAAPAPAPRPRAMPAWAARVDKVGVLIAALVAYAAF
VLPFVTLRANRIAAGAELAPAAVFPALHAYALDALWAAGALFALVRSRAAWRAAVGVG
LVFALGVAIGAAPAHLVTPDTPLARVSPAAGAWLLLFAFAVLIADALARIALAPAMRL
VALAAASAALAAFIHGGFWDGLSVMQEYAVCADTFRNEAIRHLALVAGSVAAAVALGV
PLGIGCTRSAALRGALLPLLNVVQTIPSIALYGLLMAPLAILAARVPLAARLGVSGIG
VAPALIALFLYALLPIVSSVVVGFAQVPAAVVEAALAMGMTGRERLVAIELPLALPVV
LSGVRIVLVQNIGLTAVAALIGGGGFGTFIFQGIGQSATDLVLLGALPTIALALVTAV
LFEAATDLAKGARR"
misc_feature 255112..>255486
/locus_tag="BMA10229_A0238"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(255124..255135,255139..255168,255196..255201,
255205..255207,255280..255285,255289..255291,
255295..255297,255304..255309,255313..255315,
255325..255330,255337..255339,255388..255390,
255430..255435,255442..255444,255463..255474,
255481..255486)
/locus_tag="BMA10229_A0238"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(255142..255171,255193..255207,255463..255480)
/locus_tag="BMA10229_A0238"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(255205..255207,255265..255267,255481..255483)
/locus_tag="BMA10229_A0238"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(255340..255378,255394..255399,255409..255411)
/locus_tag="BMA10229_A0238"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 255642..256580
/locus_tag="BMA10229_A0239"
/db_xref="GeneID:4791790"
CDS 255642..256580
/locus_tag="BMA10229_A0239"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="amine ABC transporter ATP-binding protein"
/protein_id="YP_001026241.1"
/db_xref="GI:124383583"
/db_xref="GeneID:4791790"
/translation="MIEIERVSRLFGDLAAVDDVSLAVARGTVTALVGASGSGKSTLL
RMINRLIAPTSGTIRVDGVDTASVPAETLRRGIGYVIQGHGLFPHWTVARNVATVPRL
LGWRAARVDARVRELLELFELDYDTYARKLPHQLSGGQQQRVGVARALAAEPAILLMD
EPFGALDPIIRGKAQDDLVALQRRLGITVVIVTHDIDEALRLGDQIAVMDAGRILQAG
SPAEILGRPQPGVVERLVAGLDRPLRLLALTRVDALAEPGAAPGEPISGALTLRDAIS
ELLWRGARALPVSSADGAAARRITLDAIVAQAKRPA"
misc_feature 255642..256565
/locus_tag="BMA10229_A0239"
/note="ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism];
Region: OpuBA; COG1125"
/db_xref="CDD:224050"
misc_feature 255645..256364
/locus_tag="BMA10229_A0239"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 255741..255764
/locus_tag="BMA10229_A0239"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(255750..255755,255759..255767,255885..255887,
256119..256124,256221..256223)
/locus_tag="BMA10229_A0239"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 255876..255887
/locus_tag="BMA10229_A0239"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 256047..256076
/locus_tag="BMA10229_A0239"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 256107..256124
/locus_tag="BMA10229_A0239"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 256131..256142
/locus_tag="BMA10229_A0239"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 256209..256229
/locus_tag="BMA10229_A0239"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 256577..257395
/locus_tag="BMA10229_A0240"
/db_xref="GeneID:4793943"
CDS 256577..257395
/locus_tag="BMA10229_A0240"
/note="identified by match to protein family HMM PF00528"
/codon_start=1
/transl_table=11
/product="amine ABC transporter permease"
/protein_id="YP_001026242.1"
/db_xref="GI:124384512"
/db_xref="GeneID:4793943"
/translation="MTRAIKAASAATEAGALGAAGRRAPVMLARVAALAALAVMLARP
GWLEPLFAPFADNGAPAIYRRASLLDLTLSHLAIVGAASAAGAVVALAAGIFVTRRAG
AEFLPVARSVVHIGQTFPPVAVLALAVPAVGFGVKPVLIALILYGLLPIFESTIAGLQ
DVPAGAVDAARAMGMSALQRLAWIELPLAFPVVLNGIRLAVVINLGTATIGSTVAAKG
LGDVIIAGLQTSNTAFVLQGGLVVALLAVLIYDALGVIGRWLAPASAAREEGGA"
misc_feature <256988..257224
/locus_tag="BMA10229_A0240"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(257069..257107,257123..257128,257138..257140)
/locus_tag="BMA10229_A0240"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 257431..258348
/locus_tag="BMA10229_A0241"
/db_xref="GeneID:4793638"
CDS 257431..258348
/locus_tag="BMA10229_A0241"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026243.1"
/db_xref="GI:124385001"
/db_xref="GeneID:4793638"
/translation="MAAECAGARARAAARRRRAPGTRISPRRAPGESIRAPSAAPPPA
APVPPGSAHATRARGTCPSPKNMPRDPRSRAARRAFATVGRSSGSNARVTVESAAPRG
AMPIGIRHSTPFDAHRPGRHVETALRARTSPALDADGLAARRRDASMNGRRTRPRPSP
LLRFGVDDVWLRPLRSGCPTGSIAKAKRMKVRARRAPARQVSPGRRPRQSGRRCTRRS
PHALSARPIPLPCAARHGTPATLAAFGRMGSRPLVHSRRHAATTIFQSGGIAPHRTSR
FAERARSASRAPAHPTRRMRVRQRHAHRS"
gene 258618..258950
/locus_tag="BMA10229_A0242"
/db_xref="GeneID:4793042"
CDS 258618..258950
/locus_tag="BMA10229_A0242"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026244.1"
/db_xref="GI:124385085"
/db_xref="GeneID:4793042"
/translation="MRICIENIQPGVTREELQAFLFKYTGKTFTDIQFIGQSGPRPGA
LIDIDGANWSALAEIRRRLHGMYWKRRRIGVWLFSFWDRSDAAEARRQREARTRQTRS
TPMTTLRR"
gene 259111..260571
/gene="arcD"
/locus_tag="BMA10229_A0243"
/db_xref="GeneID:4792946"
CDS 259111..260571
/gene="arcD"
/locus_tag="BMA10229_A0243"
/note="identified by match to protein family HMM PF00324;
match to protein family HMM TIGR00905"
/codon_start=1
/transl_table=11
/product="arginine/ornithine antiporter"
/protein_id="YP_001026245.1"
/db_xref="GI:124385473"
/db_xref="GeneID:4792946"
/translation="MAEVTQEQGVAAKSAANKLRLGALTALVVGSMIGGGIFSLPQNM
AATAEAGAILIGWAITAIGMLTLAFVFQTLANRKPQLDGGVYAYAQAGFGDYMGFSSA
WGYWISAWLGNVGYFVLLFSTLGYFFPVFGEGNTPAAIAGASVLLWAVHFLVLRGIRE
AAFVNLVTTVAKIVPLVVFILIGFFAFKLDVFRTDIWGRANPSLGSVMNQVRNMMLVT
VWVFIGIEGASIFSARAEKRSDVGRATVIGFVGVLLALVLVNVLSLGIMTQPQLAKLQ
NPSMAAVLEHVVGHWGAVLISVGLVVSLAGALLSWVLLCAEIMFSAAKDRTMPAFLRK
ENANHVPANALWLTNAMVQVFLLITLFSQSTYLSLIYLATSMILIPYFWSAAYALLIA
VRGETYEGDARARRKDLFVAALAVLYAVWLLYAGGLKYLLLSALLYAPGALFFAKAKR
ELGKPVFTAAEKLIFAAAAAAALAAAYALHSGLITL"
misc_feature 259159..260568
/gene="arcD"
/locus_tag="BMA10229_A0243"
/note="arginine-ornithine antiporter; Region:
arg_ornith_anti; TIGR03810"
/db_xref="CDD:163522"
gene 260589..261845
/gene="arcA"
/locus_tag="BMA10229_A0244"
/db_xref="GeneID:4792586"
CDS 260589..261845
/gene="arcA"
/locus_tag="BMA10229_A0244"
/EC_number="3.5.3.6"
/note="catalyzes the degradation of arginine to citruline
and ammonia"
/codon_start=1
/transl_table=11
/product="arginine deiminase"
/protein_id="YP_001026246.1"
/db_xref="GI:124386595"
/db_xref="GeneID:4792586"
/translation="MSQAIPQVGVHSEVGKLRKVLVCSPGLAHQRLTPSNCDELLFDD
VMWVNQAKRDHFDFVSKMRERGVEVLEMHNLLTETVQNPAALKWILDRKITPDNVGIG
LVDEVRAWLEGLEPRALAEFLIGGVAASDIAGAERSKVLTLFRDYLGKSSFVLPPLPN
MMFTRDTSCWIYGGVTLNPMHWPARRQETLLVAAVYKFHPAFTDAKFDVWYGDPDRDH
GMATLEGGDVMPIGRGVVLVGMGERTSRQAVGQLAQALFAKGAAERVIVAGLPNSRAS
MHLDTVFSFCDRDLVTVFPEVVNRIVPFTLRPGGDARYGIDIEREDKPFVDVVAQALG
LKSLRVVETGGNDFAAEREQWDDGNNMVCIEPGVVVGYDRNTYTNTLLRKAGVEVITI
GSSELGRGRGGGHCMTCPVLRDPVDY"
misc_feature 260604..261836
/gene="arcA"
/locus_tag="BMA10229_A0244"
/note="arginine deiminase; Provisional; Region: PRK01388"
/db_xref="CDD:179290"
gene 261910..262920
/gene="arcB"
/locus_tag="BMA10229_A0245"
/db_xref="GeneID:4791379"
CDS 261910..262920
/gene="arcB"
/locus_tag="BMA10229_A0245"
/EC_number="2.1.3.3"
/note="catalyzes the formation of ornithine and
carbamylphosphate from citrulline in the arginine
catabolic pathway"
/codon_start=1
/transl_table=11
/product="ornithine carbamoyltransferase"
/protein_id="YP_001026247.1"
/db_xref="GI:124383784"
/db_xref="GeneID:4791379"
/translation="MSFNLHNRNLLSLIHHNARELRYLLDLARDLKRAKYSGTEQPRL
LRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPASSQIGHKESMRDTARVLGRMY
DAIEYRGFSQEIVEELAHHAGVPVFNGLTDEYHPTQMLADVMTMREHSDKPLHDIRYA
YLGDARNNMGNSLLLIGAKLGMDVRIGAPKSLWPAADFIAQCEAFAAESGARLTLTED
PYEAVKGVDFIHTDVWVSMGEPVEAWDERINALLPYQVNRKLIESTGNPRTRFMHCLP
SFHNCETKVGKQIAERYPHLQDGIEVTDEVFESPRCIAFEQAENRMHTIKAVLVSTLG
GI"
misc_feature 261910..262914
/gene="arcB"
/locus_tag="BMA10229_A0245"
/note="ornithine carbamoyltransferase; Validated; Region:
PRK02102"
/db_xref="CDD:179366"
misc_feature 261931..262356
/gene="arcB"
/locus_tag="BMA10229_A0245"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:202362"
misc_feature 262375..262905
/gene="arcB"
/locus_tag="BMA10229_A0245"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:201065"
gene 263006..263947
/gene="arcC"
/locus_tag="BMA10229_A0246"
/db_xref="GeneID:4791207"
CDS 263006..263947
/gene="arcC"
/locus_tag="BMA10229_A0246"
/EC_number="2.7.2.2"
/note="reversible synthesis of carbamate and ATP from
carbamoyl phosphate and ADP"
/codon_start=1
/transl_table=11
/product="carbamate kinase"
/protein_id="YP_001026248.1"
/db_xref="GI:124384732"
/db_xref="GeneID:4791207"
/translation="MMRIVIALGGNALLQRNQPMTEVQQRENVKIAVAQIAQIAPGNE
LVIAHGNGPQVGLLALQGAAYPAVAPYPLDVLGAQTEGMIGYLIEQEMGNLLPPDAPF
ATLLTQVEVDPADPAFEHPTKPIGPVYSRDEAERLALEKGWHIAPDGDKFRRVVPSPR
PRRIFEIRPVKWLLEKGTIVICAGGGGIPTRYDANGKLSGVEAVIDKDLCASLLAREL
SADLLVIATDVDGAYLDWGKPTQALIEAAHPDELERLGFAAGSMGPKVQAAIEFARQT
GHDAVIGSLADIVAIAEGRAGTRVSVKVDGIRYRRPR"
misc_feature 263006..263908
/gene="arcC"
/locus_tag="BMA10229_A0246"
/note="carbamate kinase-like carbamoyl phosphate
synthetase; Reviewed; Region: PRK12454"
/db_xref="CDD:183535"
misc_feature 263012..263908
/gene="arcC"
/locus_tag="BMA10229_A0246"
/note="AAK_CK: Carbamate kinase (CK) catalyzes both the
ATP-phosphorylation of carbamate and carbamoyl phosphate
(CP) utilization with the production of ATP from ADP and
CP. Both CK (this CD) and nonhomologous CP synthetase
synthesize carbamoyl phosphate, an...; Region: AAK_CK;
cd04235"
/db_xref="CDD:58601"
misc_feature order(263024..263026,263030..263035,263153..263161,
263372..263374,263621..263629)
/gene="arcC"
/locus_tag="BMA10229_A0246"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:58601"
misc_feature order(263033..263035,263684..263689,263702..263704,
263711..263713,263774..263776,263786..263791,
263798..263800)
/gene="arcC"
/locus_tag="BMA10229_A0246"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58601"
misc_feature order(263033..263035,263684..263689,263702..263704,
263711..263713,263774..263776,263786..263791,
263798..263800)
/gene="arcC"
/locus_tag="BMA10229_A0246"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58601"
misc_feature order(263183..263185,263216..263218,263225..263230,
263237..263239,263249..263254,263261..263263,
263270..263275,263285..263287,263315..263323,
263327..263329,263501..263503,263510..263512,
263597..263599,263603..263605)
/gene="arcC"
/locus_tag="BMA10229_A0246"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:58601"
gene complement(264080..264193)
/locus_tag="BMA10229_A0247"
/db_xref="GeneID:4793316"
CDS complement(264080..264193)
/locus_tag="BMA10229_A0247"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026249.1"
/db_xref="GI:124384419"
/db_xref="GeneID:4793316"
/translation="MSSRRAAIATSRAARAEAGCAAPLVATDAEAAWPRRR"
gene complement(264190..264984)
/locus_tag="BMA10229_A0248"
/db_xref="GeneID:4793685"
CDS complement(264190..264984)
/locus_tag="BMA10229_A0248"
/note="identified by match to protein family HMM PF00106;
match to protein family HMM PF08659"
/codon_start=1
/transl_table=11
/product="short chain dehydrogenase"
/protein_id="YP_001026250.1"
/db_xref="GI:124384971"
/db_xref="GeneID:4793685"
/translation="MTGKRILVTGAGSGFGREVALRLAAKGHCVIAGVQIAPQITELS
AEAARRGLALDAVKLDVTCARERAQAARWDVDVLLNNAGAGEAGALVDLPVDIVRELF
ETNVFGPLELTQQVARGMIARGRGRIVFVSSIAGLITGAYTGAYCASKHALEAIAEAM
HLELAAHGVQIAVVNPGPYRTGFNDRMMETPRRWLDPARDAVTPETLTFPLEQFDPQE
MIEKMVDVTEADGGLFRNLLPAAAEQIVRDEQAHAWTRRQNERRGA"
misc_feature complement(264211..264981)
/locus_tag="BMA10229_A0248"
/note="short chain dehydrogenase; Provisional; Region:
PRK09291"
/db_xref="CDD:181762"
misc_feature complement(264259..264975)
/locus_tag="BMA10229_A0248"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(order(264448..264459,264535..264537,
264547..264549,264586..264594,264736..264744,
264868..264876,264940..264942,264946..264951,
264955..264957))
/locus_tag="BMA10229_A0248"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(264535..264537,264547..264549,
264586..264588,264670..264672))
/locus_tag="BMA10229_A0248"
/note="active site"
/db_xref="CDD:187535"
gene complement(264981..265430)
/locus_tag="BMA10229_A0249"
/db_xref="GeneID:4793012"
CDS complement(264981..265430)
/locus_tag="BMA10229_A0249"
/note="identified by match to protein family HMM PF03928"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026251.1"
/db_xref="GI:124385925"
/db_xref="GeneID:4793012"
/translation="MSPELTLERALRIVEAGVAHAARLSAAGAAVAIAVVDAGAHLAA
FARMDDAFIGAIDLATRKAGTAARFRMPSASLGALSGAGGPVRSIEHSNGGLVTFGGG
LPLVDAHGRCVGAVGVSGGTVDDDAAIAQVCVDAFITLLNAVQGART"
misc_feature complement(265023..>265310)
/locus_tag="BMA10229_A0249"
/note="Domain of unknown function (DUF336); Region:
DUF336; pfam03928"
/db_xref="CDD:202813"
gene 265528..266448
/locus_tag="BMA10229_A0250"
/db_xref="GeneID:4792140"
CDS 265528..266448
/locus_tag="BMA10229_A0250"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_001026252.1"
/db_xref="GI:124384979"
/db_xref="GeneID:4792140"
/translation="MTMKRDPLGGLHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQL
ESELKVKLFSRSTRGVSLTEAGQRYYDATAQPYRQVVDARDALNDARDEPEGLLRISA
LHLAKSVVTADVLAEFFRRYPKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGV
KIAPALTCALVATPGYLAQHGVPAKLADLARHMCIRFRFPKSGRLHKWPLRDGRRDVE
LDVAGRFVSTDTGAVIDAARAGAGIAFVFMRERIEDDLRRGTLREVLPGACRTLPPMW
LYYANRKHVPPKLRAFIAVLREHAAADARR"
misc_feature 265546..266445
/locus_tag="BMA10229_A0250"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 265558..265728
/locus_tag="BMA10229_A0250"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 265807..266415
/locus_tag="BMA10229_A0250"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_5; cd08474"
/db_xref="CDD:176163"
misc_feature order(265843..265845,265855..265857,265972..265974,
266014..266016,266023..266025,266215..266217,
266266..266268,266350..266352)
/locus_tag="BMA10229_A0250"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176163"
misc_feature order(265846..265851,265861..265866,265870..265875,
265882..265884,265894..265896,265900..265920,
266104..266106,266197..266211,266230..266235,
266242..266244)
/locus_tag="BMA10229_A0250"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176163"
gene 266733..267437
/locus_tag="BMA10229_A0251"
/db_xref="GeneID:4793020"
CDS 266733..267437
/locus_tag="BMA10229_A0251"
/note="identified by match to protein family HMM PF00043;
match to protein family HMM PF02798"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_001026253.1"
/db_xref="GI:124384771"
/db_xref="GeneID:4793020"
/translation="MSDLSEFPITKKWPAQHPEHIQLYSLPTPNGVKVSILLEETELP
YEAHVVRFDTNDQMSPEFLSLNPNNKIPAIIDPHGPGGKPLALFESGAILLYLAEKTG
RFIPADPARRYETIQWLMFQMGGIGPMFGQLGFFHKFAGREYEDKRPRERYVGEAKRL
LGVLDGRLAHRRWIMDDAYTIADIATFPWVRNLIGFYEARELVEFDRYPNVARALDAF
VARPAVARGLNIPARP"
misc_feature 266793..267416
/locus_tag="BMA10229_A0251"
/note="GSH-dependent disulfide bond oxidoreductase;
Provisional; Region: PRK13972"
/db_xref="CDD:172475"
misc_feature 266793..267041
/locus_tag="BMA10229_A0251"
/note="GST_N family, Ure2p-like subfamily; composed of the
Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is
a regulator for nitrogen catabolism in yeast. It represses
the expression of several gene products involved in the
use of poor nitrogen sources...; Region: GST_N_Ure2p_like;
cd03048"
/db_xref="CDD:239346"
misc_feature order(266817..266822,266829..266831,266838..266840,
266847..266852,267015..267017)
/locus_tag="BMA10229_A0251"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:239346"
misc_feature order(266820..266822,266940..266948,266997..267002)
/locus_tag="BMA10229_A0251"
/note="GSH binding site (G-site) [chemical binding]; other
site"
/db_xref="CDD:239346"
misc_feature order(266931..266936,266940..266942,266988..266990,
266994..266999,267006..267008)
/locus_tag="BMA10229_A0251"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239346"
misc_feature 267066..267410
/locus_tag="BMA10229_A0251"
/note="C-terminal, alpha helical domain of Ure2p and
related Glutathione S-transferase-like proteins; Region:
GST_C_Ure2p_like; cd03178"
/db_xref="CDD:198288"
misc_feature order(267069..267074,267081..267086,267090..267095,
267099..267104,267126..267128,267135..267140,
267150..267152,267168..267170,267174..267176,
267186..267191,267207..267209,267219..267221)
/locus_tag="BMA10229_A0251"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198288"
misc_feature order(267078..267080,267096..267101,267285..267287,
267294..267299,267393..267395,267399..267401,
267408..267410)
/locus_tag="BMA10229_A0251"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198288"
gene 267990..268529
/locus_tag="BMA10229_A0252"
/db_xref="GeneID:4793355"
CDS 267990..268529
/locus_tag="BMA10229_A0252"
/note="identified by match to protein family HMM PF01047"
/codon_start=1
/transl_table=11
/product="MarR family transcriptional regulator"
/protein_id="YP_001026254.1"
/db_xref="GI:124383788"
/db_xref="GeneID:4793355"
/translation="MKLIGKQSGAALPLDETLPAPDAAPLRLDEWLPYQLFLPAQHVA
RVLAEFYGPRYGIGQPAWRILATIVDRPGTNARQIGAALGMDAVSVSRGIAQLVGAGF
ARRDAARNDRRYACVMATPAGRAAFDDIAAVCIAVERRLLDVLTPEERATLAAALPKI
GRESERIAIVGWQRLLDGV"
misc_feature 268149..268439
/locus_tag="BMA10229_A0252"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature 268152..>268283
/locus_tag="BMA10229_A0252"
/note="MarR family; Region: MarR_2; pfam12802"
/db_xref="CDD:205082"
gene 268749..269864
/locus_tag="BMA10229_A0253"
/db_xref="GeneID:4791211"
CDS 268749..269864
/locus_tag="BMA10229_A0253"
/note="identified by match to protein family HMM PF01094"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter periplasmic amino
acid-binding protein"
/protein_id="YP_001026255.1"
/db_xref="GI:124386501"
/db_xref="GeneID:4791211"
/translation="MNVRMGCLSLLAAVAFDAHAQSSVVRIGVAMPLTGPVAHLGKDV
QNGAQLAVDELNRAPPTIEGKSVKFVLVVEDDQGDPRQAVQVAQRLVDARVAGVVGDL
NSGPTIVAAKVYAAAGIAQIAPAATHPAYTQLGYKTAFRLMATDNQQGASLAGLAAKL
AKGRPIALIDDRGAYGQGLIDQTEKTLRASGVTRIIRDYTTDTAVNFASILTRVKGAH
AAVIVYGGADAQAGPMVRQMKALGIDAAFVGSDGVCTGQWTALSSGANEGQFCTQAGD
PRARMAGYAAFERRFEARYGKVIVFAPYGYDAVMLLADAMRRANSTEPAALLGALATT
RYDGVIGRIRFSPQGDNLNGAVTVYRVQRGALVPVSD"
misc_feature 268791..269843
/locus_tag="BMA10229_A0253"
/note="ABC-type branched-chain amino acid transport
systems, periplasmic component [Amino acid transport and
metabolism]; Region: LivK; COG0683"
/db_xref="CDD:31027"
misc_feature 268824..269831
/locus_tag="BMA10229_A0253"
/note="Type I periplasmic ligand-binding domain of ABC
(Atpase Binding Cassette)-type active transport systems
that are involved in the transport of all three branched
chain aliphatic amino acids (leucine, isoleucine and
valine); Region: PBP1_ABC_LIVBP_like; cd06342"
/db_xref="CDD:107337"
misc_feature order(268845..268847,268872..268874,268884..268886,
268893..268895,269454..269456,269517..269519,
269526..269528,269535..269540,269631..269633)
/locus_tag="BMA10229_A0253"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107337"
misc_feature order(269052..269060,269121..269126,269271..269273,
269427..269429,269499..269501)
/locus_tag="BMA10229_A0253"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107337"
gene 269871..270017
/locus_tag="BMA10229_A0254"
/db_xref="GeneID:4791631"
CDS 269871..270017
/locus_tag="BMA10229_A0254"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026256.1"
/db_xref="GI:124385941"
/db_xref="GeneID:4791631"
/translation="MRRPRKARAPLCRGRRSRLGKTGLPDARPFAAACAAALRRSRPA
GVRI"
gene complement(270159..270653)
/locus_tag="BMA10229_A0255"
/db_xref="GeneID:4792156"
CDS complement(270159..270653)
/locus_tag="BMA10229_A0255"
/note="identified by match to protein family HMM PF01047"
/codon_start=1
/transl_table=11
/product="MarR family transcriptional regulator"
/protein_id="YP_001026257.1"
/db_xref="GI:124385038"
/db_xref="GeneID:4792156"
/translation="MDRAAHAVEQWRRERPDLDPSPMIVLGRLQEAALVIARDRLNPL
FARYGLQPGEFDVLATLRRSGAPYALTPTALYDAAMISSGSMTNRIDRLEKAGWVERR
PNPADGRGTLVALTPAGLALIDDAVVAHVGNQQRALSALSDAEQRQLAKLLGKLLQGQ
ADER"
misc_feature complement(<270288..270587)
/locus_tag="BMA10229_A0255"
/note="MarR family; Region: MarR_2; cl17246"
/db_xref="CDD:247800"
misc_feature complement(270216..270521)
/locus_tag="BMA10229_A0255"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
gene 270777..271775
/locus_tag="BMA10229_A0256"
/db_xref="GeneID:4793079"
CDS 270777..271775
/locus_tag="BMA10229_A0256"
/note="identified by match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="major facilitator family transporter"
/protein_id="YP_001026258.1"
/db_xref="GI:124384483"
/db_xref="GeneID:4793079"
/translation="MNLLLSPAWRLVAVVLVGLNLRPALASIGPLLDTIQRASGLSDS
AASLLTTLPILLMGALGLVAPWLARRVGVRAGVGLGVALIGLACAARVAAGAPAALLA
SALCAGLGIAAAQALLPAFIKTQFAARAGSVMGFYSTSIMGGAVFASVATPFAAHAIG
WTCALAGWALPAAAAALLWPLATRATARPAHARPAARRAHGARAWLLAAFFGLGTGAY
TLVLAWLPPYYVSLGWSPEAAGGLLGGVTLAEVVAGLTVSALVERLPDRRPALFTALV
SLFAGLIALIAAPLGLALPASLLLGLGIGALFPLSLIVTLDHASSAAEAGALTGFV"
misc_feature 270807..271772
/locus_tag="BMA10229_A0256"
/note="putative cyanate transporter; Provisional; Region:
cynX; PRK09705"
/db_xref="CDD:182038"
gene 271821..271961
/locus_tag="BMA10229_A0257"
/db_xref="GeneID:4793609"
CDS 271821..271961
/locus_tag="BMA10229_A0257"
/codon_start=1
/transl_table=11
/product="major facilitator family transporter"
/protein_id="YP_001026259.1"
/db_xref="GI:124383570"
/db_xref="GeneID:4793609"
/translation="MIRQSVADLSPAWGFMAAVCIAMAAMAARFAPPRPAIARSGARS
GT"
gene 272081..273646
/locus_tag="BMA10229_A0258"
/db_xref="GeneID:4793930"
CDS 272081..273646
/locus_tag="BMA10229_A0258"
/note="identified by match to protein family HMM PF00041;
match to protein family HMM PF02638"
/codon_start=1
/transl_table=11
/product="fenI protein"
/protein_id="YP_001026260.1"
/db_xref="GI:124384435"
/db_xref="GeneID:4793930"
/translation="MLSTRLRHLAAAALVLSASACASSPQAVPEVACRPDETMPKRQF
RGTWIASVINLDWPSRPGLPAAAQQAELSAWLDDAVRMNRNAVILQVRPTADAFWPSP
FEPWSKYLTGAQGGDPGYDPLAFAVAEAHRRNLELHAWFNPYRVAMDDRLDALVATHP
ARAHPDWVVRYGGKLYYNPGVPAARAFVVDAIMDAVARYDIDAVHLDDYFYPYPVAGA
TFDDASAYAQYGAGFATLADWRRDNVDRLVESLARRIKAAKPWVKFGISPFAVWRNAA
TDPQGSRTSASVQTYDDLYADTRRWVRERWIDYVVPQAYWARGFAPADYDEVVAWWAN
EVRGRDAHLYIGQAAYKVGTSNQSPGWSDPDELSRHLAFNLTAPEVKGDVYFSAKDVR
ADRLGATTRLNRTWYSRPALVPTMPALGGNAPPSAKALRAQRTPDGVRLQWQAGSAAA
ASYAVYRHALGRQDMCADSDARHLLAMVRGTQYVDVTARADRDYRYVVTALDRLWHES
EPAYVAMPAAKPR"
misc_feature 272213..273268
/locus_tag="BMA10229_A0258"
/note="Uncharacterized BCR, COG1649; Region: DUF187;
cl15398"
/db_xref="CDD:210095"
gene complement(273725..274450)
/gene="cobM"
/locus_tag="BMA10229_A0259"
/db_xref="GeneID:4793561"
CDS complement(273725..274450)
/gene="cobM"
/locus_tag="BMA10229_A0259"
/EC_number="2.1.1.133"
/note="identified by match to protein family HMM PF00590;
match to protein family HMM TIGR01465"
/codon_start=1
/transl_table=11
/product="precorrin-4 C(11)-methyltransferase"
/protein_id="YP_001026261.1"
/db_xref="GI:124383528"
/db_xref="GeneID:4793561"
/translation="MTVYFIGAGPGDPELITVKGQRLVRRCPVILYAGSLVPAAVLDG
HRAELVVNTAELDLDEIVALLARAHGKGQDVARVHSGDPPLYGAIGEQIRRLAALGIP
YEIVPGVTATAACAAALGVELTLPGVAQTVILTHYAGKTTMPAGESLASLAAHRATLA
IHLGVRHLARIVADVLPHYGADCPIAVIYRASWPDEARVTGTLADIVDKVSGRSIERT
ALILIGRVLSAEGFDESTLYAKA"
misc_feature complement(273833..274447)
/gene="cobM"
/locus_tag="BMA10229_A0259"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature complement(273767..274444)
/gene="cobM"
/locus_tag="BMA10229_A0259"
/note="Precorrin-4 C11-methyltransferase (CbiF/CobM);
Region: Precorrin-4_C11-MT; cd11641"
/db_xref="CDD:212500"
misc_feature complement(order(273791..273799,273878..273883,
273887..273889,273962..273970,274118..274123,
274196..274198,274205..274213,274343..274345,
274421..274423))
/gene="cobM"
/locus_tag="BMA10229_A0259"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212500"
misc_feature complement(order(273791..273796,273878..273883,
273887..273889,273965..273970,274043..274045,
274118..274123,274190..274198,274205..274213,
274421..274423))
/gene="cobM"
/locus_tag="BMA10229_A0259"
/note="active site"
/db_xref="CDD:212500"
misc_feature complement(order(273986..273991,273995..274000,
274010..274015,274019..274024,274043..274069,
274079..274087,274091..274093,274100..274105,
274112..274117,274121..274132,274136..274138,
274160..274162,274169..274174,274178..274207,
274277..274279,274388..274390,274394..274411,
274415..274417))
/gene="cobM"
/locus_tag="BMA10229_A0259"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212500"
gene complement(274789..275523)
/gene="cobK"
/locus_tag="BMA10229_A0260"
/gene_synonym="cbiJ; cobK"
/db_xref="GeneID:4793888"
CDS complement(274789..275523)
/gene="cobK"
/locus_tag="BMA10229_A0260"
/gene_synonym="cbiJ; cobK"
/EC_number="1.3.1.54"
/note="CobK/CbiJ; there are 2 pathways for cobalamin
(vitamin B12) production, one aerobic (ex. P.
denitrificans), the other anaerobic (ex. S. typhimurium);
the CobK/CbiJ perform similar reactions in both; the
anaerobic pathway includes the use of a chelated cobalt
ion in order for ring contraction to occur; CobK thus
converts precorrin 6 into dihydro-precorrin 6 while CbiJ
converts cobalt-precorrin 6 into cobalt-deihydro-precorrin
6"
/codon_start=1
/transl_table=11
/product="cobalt-precorrin-6x reductase"
/protein_id="YP_001026262.1"
/db_xref="GI:124386358"
/db_xref="GeneID:4793888"
/translation="MSVRRVLLLGGTGDALRTARALAPHDVYSLAGLGRVPDDLACVV
RVGGFGGADGLARYLREHAVALVVDATHPFAARISANAAAACRAAGVPYWALRRAPWR
PRPGDDWRGVADWAGVLAAIAPFARPLFTLGREPLAHLDEIAPHQHWLVRCLDAHAGN
ARAHVLAARGPFSLEGERALFAAAAIDVVVSKNSGGAATEAKLDVARERRVPVVMVER
PALPDADREFGATAALVDALRAWRAP"
misc_feature complement(274795..275520)
/gene="cobK"
/locus_tag="BMA10229_A0260"
/gene_synonym="cbiJ; cobK"
/note="cobalt-precorrin-6x reductase; Reviewed; Region:
PRK08057"
/db_xref="CDD:181213"
gene complement(275520..276479)
/gene="cbiD"
/locus_tag="BMA10229_A0261"
/db_xref="GeneID:4791668"
CDS complement(275520..276479)
/gene="cbiD"
/locus_tag="BMA10229_A0261"
/note="Catalyzes the methylation of C-1 in
cobalt-precorrin-5 and the subsequent extrusion of acetic
acid from the resulting intermediate to form
cobalt-precorrin-6A"
/codon_start=1
/transl_table=11
/product="cobalt-precorrin-6A synthase"
/protein_id="YP_001026263.1"
/db_xref="GI:124386382"
/db_xref="GeneID:4791668"
/translation="MLPKGQHVAMRLAFCRATDDGGAEAGTIKDAGDDPDVTHGALVF
ARVRLVHEPGVRFRAGPGVGTVTRAGLPIAVGEPAINPVPRRMMTEHLAALAAEHGYA
GGFDVAIGVENGEALARKTMNPRLGIVGGLSILGTTGIVRPFSCSAYIASIHQGIDVA
RANGVTHIAACTGNASEDAVRARYGLPDIALIEMGDFAGAVLKYLRRASVARLTLCGG
FGKLSKLAAGHLDLHSRHSSIDLPLLAEWAGEAGASAVLQHEIRAANTSQQALALALA
HHVPLGDVVCAHARRVARDIVPGEVDVETLAIDREGRIVGVVP"
misc_feature complement(275523..276476)
/gene="cbiD"
/locus_tag="BMA10229_A0261"
/note="cobalt-precorrin-6A synthase; Reviewed; Region:
cbiD; PRK00075"
/db_xref="CDD:178843"
gene complement(276609..277835)
/gene="cobL"
/locus_tag="BMA10229_A0262"
/db_xref="GeneID:4791692"
CDS complement(276609..277835)
/gene="cobL"
/locus_tag="BMA10229_A0262"
/EC_number="2.1.1.132"
/note="identified by match to protein family HMM PF00590;
match to protein family HMM TIGR02467; match to protein
family HMM TIGR02469"
/codon_start=1
/transl_table=11
/product="precorrin-6Y C5,15-methyltransferase"
/protein_id="YP_001026264.1"
/db_xref="GI:124385939"
/db_xref="GeneID:4791692"
/translation="MTAWLTVVGIGDDGYAGLGKPARRALADAAVVMGGERHLAMLPA
RHRAQRAPWPKPFDLAPLFARRPARVCVLASGDPMLFGVGALLARALAPNEWRVLPAP
SSLSLAAARTGWPLQDVDAVSLVGRPLASLHRHLYPGRRLFVLSADGATPAAIAGALV
ARGFGPSAMSVFEHLGGPLERRLDARADAWRDARAAALNVVAIECRACADAPRLALTP
GLPDDAYRHDGQITKRDLRALALARLAPAPGELLWDVGAGCGSIGIEWMRAHPSCRTI
AIEAHPDRQRFIEHNRDALGVPALELVAGRAPDALAGLRAPDAVFVGGGVSREGVLDA
CWAGLKPGGRFVAHAVTLQGEAALVAWRERHGGTLTRVSVAHAQPLGGFDAWRQALPV
TLYDARKPRGVQPEHA"
misc_feature complement(277296..277826)
/gene="cobL"
/locus_tag="BMA10229_A0262"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature complement(277224..277823)
/gene="cobL"
/locus_tag="BMA10229_A0262"
/note="Precorrin-6Y methyltransferase, the cobalamin
biosynthesis enzyme CbiE; Region: Precorrin-6Y-methylase;
cd11644"
/db_xref="CDD:212503"
misc_feature complement(order(277236..277244,277311..277316,
277320..277322,277401..277406,277467..277469,
277524..277529,277590..277598,277605..277613,
277725..277727,277800..277802))
/gene="cobL"
/locus_tag="BMA10229_A0262"
/note="active site"
/db_xref="CDD:212503"
misc_feature complement(order(277467..277481,277506..277511,
277518..277523,277527..277538,277542..277544,
277569..277574,277578..277583,277590..277607,
277767..277769,277773..277784))
/gene="cobL"
/locus_tag="BMA10229_A0262"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212503"
misc_feature complement(order(277236..277244,277311..277316,
277320..277322,277398..277403,277524..277529,
277593..277598,277605..277613,277725..277727))
/gene="cobL"
/locus_tag="BMA10229_A0262"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212503"
misc_feature complement(276780..277082)
/gene="cobL"
/locus_tag="BMA10229_A0262"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(276867..276869,276915..276923,
276996..277001,277053..277073))
/gene="cobL"
/locus_tag="BMA10229_A0262"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 277851..278009
/locus_tag="BMA10229_A0263"
/db_xref="GeneID:4792154"
CDS 277851..278009
/locus_tag="BMA10229_A0263"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026265.1"
/db_xref="GI:124385759"
/db_xref="GeneID:4792154"
/translation="MFPSILKATPALRIPRSGVAKKGIIQRPSTGAPRGPRGNAGRAA
PLRPPPQL"
gene 278233..279681
/locus_tag="BMA10229_A0264"
/db_xref="GeneID:4792334"
CDS 278233..279681
/locus_tag="BMA10229_A0264"
/note="identified by match to protein family HMM PF01077;
match to protein family HMM PF03460; match to protein
family HMM TIGR02435"
/codon_start=1
/transl_table=11
/product="nitrite/sulfite reductase domain-containing
protein"
/protein_id="YP_001026266.1"
/db_xref="GI:124384449"
/db_xref="GeneID:4792334"
/translation="MNPSAAVFSSAAARAASACPGLVRIVAARDGGLCRIKLPGGALT
AAQARAVAAVARAFGSGVIEATNRANLQVRGVKAGREASASRALIDAGLGPLMDGASA
ASLEACAAARDDVRNVMLSPTAGRDPDALVDSAALAARLLAMLQTEPRCAALSPKFSV
LLDGGERLAALDHPHDIWLSALRDAHGAPADTQFAIGLAGCPPVDGGQAAPGAPCAGA
LAAVAPEHAVECVRALVTSFVELAPAGATRMRELLATCPPDAFLSHVESKLSESKQPF
ALRRDAHLAGWRRARVDAALRLGILPERDPARCAVGAQPPLGRLDAAALAALAALADT
HGDGTLRITPWQGVMLPAVARAAAPEALARLAALGFVCDAAAPLAHIVACAGSRGCAR
SPADTKAHALALAARLAASVDVHVTGCARSCALPHAAAHTLVASAASRYDLYRRDGAT
GFGRAVARQLTIDQAADALARGARPSQDDLDA"
misc_feature 278287..279510
/locus_tag="BMA10229_A0264"
/note="precorrin-3B synthase; Region: CobG; TIGR02435"
/db_xref="CDD:162856"
misc_feature 278317..278496
/locus_tag="BMA10229_A0264"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:202646"
misc_feature 279136..>279279
/locus_tag="BMA10229_A0264"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:202646"
gene 279674..280300
/gene="cobH"
/locus_tag="BMA10229_A0265"
/db_xref="GeneID:4793575"
CDS 279674..280300
/gene="cobH"
/locus_tag="BMA10229_A0265"
/EC_number="5.4.1.2"
/note="catalyzes the interconversion of precorrin-8X and
hydrogenobyrinate"
/codon_start=1
/transl_table=11
/product="precorrin-8X methylmutase"
/protein_id="YP_001026267.1"
/db_xref="GI:124383369"
/db_xref="GeneID:4793575"
/translation="MLDYLRDGRAIYRESFATIRAQADLTGVPPDLEKLAVRVIHACG
MVDIVRDLRFSAGAGEAGRAALAAGAPILCDARMVAEGITRARLPASNPVICTLGAPE
VPHLARELGNTRSAAALELWRAHLAGSVVAIGNAPTALFHLLDMIDAGAPRPALILGF
PVGFVGAAESKALLAADSRGVPFVAIAGRRGGSAMAAAAVNALASEAE"
misc_feature 279674..280225
/gene="cobH"
/locus_tag="BMA10229_A0265"
/note="precorrin-8X methylmutase; Reviewed; Region: cobH;
PRK08285"
/db_xref="CDD:181352"
misc_feature 279701..280225
/gene="cobH"
/locus_tag="BMA10229_A0265"
/note="Precorrin-8X methylmutase; Region: CbiC; pfam02570"
/db_xref="CDD:202290"
gene 280297..281031
/gene="cobI"
/locus_tag="BMA10229_A0266"
/db_xref="GeneID:4791292"
CDS 280297..281031
/gene="cobI"
/locus_tag="BMA10229_A0266"
/EC_number="2.1.1.130"
/note="catalyzes the formation of precorrin-3 from
precorrin-2"
/codon_start=1
/transl_table=11
/product="precorrin-2 C(20)-methyltransferase"
/protein_id="YP_001026268.1"
/db_xref="GI:124383537"
/db_xref="GeneID:4791292"
/translation="MTRKTGRLFGLGVGPGDPELLTLKALRMLQAAPVVAYFVAKGKK
GNAFGIVEAHLSDAQTHLPLVYPVTTETLPPPLCYETVIADFYDTAAALVAAHLDAGR
DVAVICEGDPFFYGSYMYLHDRLAPRYDAEVVPGVCSMLGGAAVLGVPLVYRNQSLAV
LSGVLPEDELRQRLASADAAVVMKLGRNFDKVRRVLDALGLARRALYVERATIAAQRI
VPLADVDPMASPYFSLLVVPGEKWQG"
misc_feature 280315..281010
/gene="cobI"
/locus_tag="BMA10229_A0266"
/note="Precorrin-2 C20-methyltransferase, also named CobI
or CbiL; Region: Precorrin_2_C20_MT; cd11645"
/db_xref="CDD:212504"
misc_feature 280315..280971
/gene="cobI"
/locus_tag="BMA10229_A0266"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature order(280339..280341,280621..280629,280636..280644,
280708..280713,280723..280725,280843..280848,
280918..280920,280924..280929,280987..280998)
/gene="cobI"
/locus_tag="BMA10229_A0266"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212504"
misc_feature order(280339..280341,280621..280629,280636..280644,
280708..280713,280780..280782,280840..280845,
280918..280920,280924..280929,280993..280998)
/gene="cobI"
/locus_tag="BMA10229_A0266"
/note="active site"
/db_xref="CDD:212504"
misc_feature order(280348..280368,280627..280641,280651..280656,
280660..280662,280693..280695,280699..280707,
280714..280722,280726..280731,280738..280749,
280762..280776,280780..280782,280828..280830)
/gene="cobI"
/locus_tag="BMA10229_A0266"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212504"
gene 281028..282878
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/db_xref="GeneID:4793897"
CDS 281028..282878
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/EC_number="2.1.1.131"
/note="CbiG; identified by match to protein family HMM
PF00590; match to protein family HMM PF01890; match to
protein family HMM TIGR01466"
/codon_start=1
/transl_table=11
/product="precorrin-3B C(17)-methyltransferase"
/protein_id="YP_001026269.1"
/db_xref="GI:124386150"
/db_xref="GeneID:4793897"
/translation="MTAAPAIVILGPGALETARRIQARFDGARVHALAGRAEADLAFA
ELGPHLRELYARGAPIVALFAAGIAIRCVAPCLADKGAEPPVLAVAEDGSAVVPLLGG
LAGANALAREIADALGVAAAITTSGELRFGACMLNPPEGYALADLDAGKRFVSDLLAG
ESTRVEGDARWLDDVALPRDAHAARVIRVTPHASRGDAHALLIHPRSVVVALGDGDGD
IDGEGLRDDARSVSAPDATGRARANAAAPARAASPDLPPLAARIAAALAAHDLAPLAL
AAVVAPARRIAEHALTDAARALRAPLRFVETNARDAAGVLDAALPAALAPRVDASRAA
AGSPRTTPPEPRDVAIAVARAPVDADALGIARGRLTVLGLGPGRADLMTPAARAALAD
ATDIVGYATYVNMAGPLRADQQLHVSDNREELQRARYAFELAARGRRVAVVSSGDPGV
FAMAAAVLEALDGADDARWAAVELDVVPGVSAALATAAEAGAPLGHDFCLISLSDNLK
PWAIIEKRIDHAAAADFALAFYNPVSRARPVQFDRALDIVRRHRAPETVVVLGRDIGR
PGATLATTTLAALSAQQVDMRTMVIVGSSTTRRVARDGARDWVYTPRWYR"
misc_feature 281055..>281651
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/note="Cobalamin biosynthesis protein CbiG [Coenzyme
metabolism]; Region: CbiG; COG2073"
/db_xref="CDD:32256"
misc_feature 281172..281411
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/note="Cobalamin synthesis G N-terminal; Region: CbiG_N;
pfam11760"
/db_xref="CDD:204736"
misc_feature 281442..281642
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/note="Cobalamin biosynthesis central region; Region:
CbiG_mid; pfam11761"
/db_xref="CDD:204737"
misc_feature 282126..282872
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/note="Precorrin-3B C(17)-methyltransferase (CobJ/CbiH);
Region: Precorrin_3B_C17_MT; cd11646"
/db_xref="CDD:212505"
misc_feature 282129..282731
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature order(282153..282155,282360..282368,282375..282383,
282468..282473,282531..282533,282612..282617,
282708..282710,282714..282719,282789..282794)
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/note="active site"
/db_xref="CDD:212505"
misc_feature order(282153..282155,282360..282368,282375..282380,
282468..282473,282483..282485,282615..282623,
282708..282710,282714..282719,282723..282725,
282783..282794)
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212505"
misc_feature order(282159..282161,282171..282182,282366..282368,
282372..282380,282390..282392,282399..282404,
282447..282449,282453..282455,282459..282470,
282477..282479,282498..282503,282507..282533,
282570..282572,282597..282602,282807..282809,
282819..282824,282849..282851,282855..282857,
282864..282866)
/gene="cbiG"
/locus_tag="BMA10229_A0267"
/gene_synonym="cobJ"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212505"
gene 283222..284583
/locus_tag="BMA10229_A0268"
/db_xref="GeneID:4791822"
CDS 283222..284583
/locus_tag="BMA10229_A0268"
/note="identified by match to protein family HMM PF00704;
match to protein family HMM PF02839"
/codon_start=1
/transl_table=11
/product="glycosyl hydrolase"
/protein_id="YP_001026270.1"
/db_xref="GI:124384552"
/db_xref="GeneID:4791822"
/translation="MNFSMLSRIVPRALAAGCLFAAAGASQAAGVYAPYVDVTLYPTP
LVDQIGVQQGIQQFMLAFVVSGGNQCTPSWGGVQPIGNGATGDLLDKIATSVTAYRAK
GGDVAVSFGGAAGQPLMQACSSVAALKGAYQTVIDTYSLTHVDFDIEGASQQDSAAVA
RNFQAVAQLQADYAAKGKPLHVTLTLPAMPTGLVQDGLNVLNAALANNVTLDAVNIMT
MDYGPSGIDMGAAAISAAQGLYSQLDTAYKSAGKPQTDAQLKQLVGVTPMIGVNDVAG
EIFTLANAQSVQTTAANNNYGFVGIWSITRDKACDGSSQYASPICSGVAQQPYAFSSV
FKQLGGHWGAGVTQDPNYGGGSDGGGKPQPGAPWSATQVYTAGATVTYQGTTYQAQWW
TQGDIPGQASVWKPVGGNVPAWSSTTAYPGGACVTYQGAKYCAKWWTQGDVPSAGGPW
TRA"
misc_feature 283321..284229
/locus_tag="BMA10229_A0268"
/note="PF-ChiA is an uncharacterized chitinase found in
the hyperthermophilic archaeon Pyrococcus furiosus with a
glycosyl hydrolase family 18 (GH18) catalytic domain as
well as a cellulose-binding domain. Members of this
domain family are found not only in...; Region:
GH18_PF-ChiA-like; cd06543"
/db_xref="CDD:119360"
misc_feature order(283324..283326,283405..283407,283546..283548,
283654..283656,283660..283662,283666..283668,
283876..283881,284023..284025,284125..284127)
/locus_tag="BMA10229_A0268"
/note="active site"
/db_xref="CDD:119360"
misc_feature 284320..284439
/locus_tag="BMA10229_A0268"
/note="Chitin/cellulose binding domain. Putative
carbohydrate binding domain found in many different
glycosyl hydrolase enzymes. May occur in tandem
arrangements; Region: ChtBD3; cd00036"
/db_xref="CDD:28918"
misc_feature <284323..>284574
/locus_tag="BMA10229_A0268"
/note="Uncharacterized protein contain chitin-binding
domain type 3 [General function prediction only]; Region:
COG3979"
/db_xref="CDD:33759"
misc_feature 284392..284397
/locus_tag="BMA10229_A0268"
/note="chitin/cellulose binding site [chemical binding];
other site"
/db_xref="CDD:28918"
misc_feature 284458..284574
/locus_tag="BMA10229_A0268"
/note="Chitin/cellulose binding domain. Putative
carbohydrate binding domain found in many different
glycosyl hydrolase enzymes. May occur in tandem
arrangements; Region: ChtBD3; cd00036"
/db_xref="CDD:28918"
misc_feature 284530..284535
/locus_tag="BMA10229_A0268"
/note="chitin/cellulose binding site [chemical binding];
other site"
/db_xref="CDD:28918"
gene 284764..284949
/locus_tag="BMA10229_A0269"
/db_xref="GeneID:4793496"
CDS 284764..284949
/locus_tag="BMA10229_A0269"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026271.1"
/db_xref="GI:124383910"
/db_xref="GeneID:4793496"
/translation="MGEPVADGRRRWSARAAPELSVDKITTVQARAKRRAARAARRNA
DARRCGAVFIRRRTATL"
gene 285018..285272
/locus_tag="BMA10229_A0270"
/db_xref="GeneID:4791172"
CDS 285018..285272
/locus_tag="BMA10229_A0270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026272.1"
/db_xref="GI:124383944"
/db_xref="GeneID:4791172"
/translation="MKRFLSCVALVCFALPAAHAQTQTYHFEEGGTTPTGVTSQPASA
AAQARTQRAKPHRHPVRRNKHHRTHRRARSAQNDRFYSQP"
gene 285269..285538
/locus_tag="BMA10229_A0271"
/db_xref="GeneID:4791025"
CDS 285269..285538
/locus_tag="BMA10229_A0271"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026273.1"
/db_xref="GI:124386411"
/db_xref="GeneID:4791025"
/translation="MTLAARSRAASGAIHRQPFGRRRQAAASDSRRMTRMTRETRRAA
CEPRFAALAIRGARRRASRPRVEQRASDARRYSTAHHFAKRKPLA"
gene complement(285616..286302)
/locus_tag="BMA10229_A0272"
/db_xref="GeneID:4791721"
CDS complement(285616..286302)
/locus_tag="BMA10229_A0272"
/note="identified by match to protein family HMM PF02230"
/codon_start=1
/transl_table=11
/product="carboxylesterase"
/protein_id="YP_001026274.1"
/db_xref="GI:124385010"
/db_xref="GeneID:4791721"
/translation="MLDETPTIEIETGPNPAFAVILMHGLGADANDFVPLVPELRIAN
GPAVRFVFPNAPEIAVTANNGYVMRAWYDILSFEGVNRQVDEAGIDASCASVRGLIAE
QNRRGIPTSRIFVAGFSQGGAMAYSAGLTHPDALAGLIVLSGYVPSPGFIDARLADAN
RTTPIFAAHGTDDDILPIRLGEAARDFARDKGASVDWHAYPMPHSVCIEEIDALRRWL
HARIAALQAA"
misc_feature complement(285637..286278)
/locus_tag="BMA10229_A0272"
/note="Phospholipase/Carboxylesterase; Region:
Abhydrolase_2; pfam02230"
/db_xref="CDD:216940"
misc_feature complement(285772..286242)
/locus_tag="BMA10229_A0272"
/note="Serine hydrolase (FSH1); Region: FSH1; pfam03959"
/db_xref="CDD:217816"
gene 286431..286664
/locus_tag="BMA10229_A0274"
/db_xref="GeneID:4793051"
CDS 286431..286664
/locus_tag="BMA10229_A0274"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026275.1"
/db_xref="GI:124384772"
/db_xref="GeneID:4793051"
/translation="MGAFRYLGGLAARLAAPAAHDRASGPREQPAHGERAFAAVSRSM
RPARPARRIAAHAAAAHATVGAFTRPRARAPAA"
gene complement(286630..287244)
/locus_tag="BMA10229_A0273"
/db_xref="GeneID:4793356"
CDS complement(286630..287244)
/locus_tag="BMA10229_A0273"
/codon_start=1
/transl_table=11
/product="magnesium chelatase"
/protein_id="YP_001026276.1"
/db_xref="GI:124384466"
/db_xref="GeneID:4793356"
/translation="MRHDDARGRPGTRIAWRATLAAKRGEAWRADHLRYRPQAGSPGA
LHCFVLDCSASMLTAERLARAKGLVVALFDSLARERADAALVCFGGNAADVRFGPVVP
RWWNERWLAPVGAGGGTPLTRGIGAATRLLARAARRHPGQQRWLWLLSDGRTTESPAR
PALAERIVIVDFDDAPVRLGRCERLAHAWGAALVTPQALERGGG"
misc_feature complement(286663..287115)
/locus_tag="BMA10229_A0273"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cl00057"
/db_xref="CDD:206808"
misc_feature complement(order(286792..286794,286888..286890,
287092..287094))
/locus_tag="BMA10229_A0273"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29222"
gene complement(287325..288608)
/locus_tag="BMA10229_A0275"
/db_xref="GeneID:4793592"
CDS complement(287325..288608)
/locus_tag="BMA10229_A0275"
/note="identified by match to protein family HMM PF01078;
match to protein family HMM PF07726; match to protein
family HMM PF07728"
/codon_start=1
/transl_table=11
/product="magnesium-chelatase subunit"
/protein_id="YP_001026277.1"
/db_xref="GI:124385915"
/db_xref="GeneID:4793592"
/translation="MNPTNEAGAATAAASDDRALPAAYPFSALIGQAALQQALLLVAV
DPGLGGVLVSGPRGTAKSTAARALAELLPEGRFVTLPLSASDEQVTGSLDLASALADN
TVRFSPGLVARAHLGVLYVDEINLLPDALVDALLDAAASGVNTVERDGVSHSHAARFA
LVGTMNPEEGELRPQLLDRFGLMVELANCYDAATRQRIVKARLAFDLDPHGFRAQYRD
AQAALVAQIRAARAALPALAFDDAAHARVAELCIGAAVDGLRGDLVMLRAARALAALD
GAARVAAAHVERVAADVLRHRRTRFEPQPEFQPGFQPGSQAGPQPMGRREPPPASRSA
GGDAPGGRADPGEAEATRAPTPRDALPGGASGPAHPAARAPSDAQRRAADERAAARDG
GRGPAADDSDWGYLPPEPAGIAPVKGVIPLPLKKR"
misc_feature complement(288048..288473)
/locus_tag="BMA10229_A0275"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(288051..288464)
/locus_tag="BMA10229_A0275"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:197690"
misc_feature complement(288423..288446)
/locus_tag="BMA10229_A0275"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(288114..288116,288243..288245,
288420..288443))
/locus_tag="BMA10229_A0275"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(288240..288257)
/locus_tag="BMA10229_A0275"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(288072..288074)
/locus_tag="BMA10229_A0275"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene complement(288605..289216)
/locus_tag="BMA10229_A0276"
/db_xref="GeneID:4792130"
CDS complement(288605..289216)
/locus_tag="BMA10229_A0276"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026278.1"
/db_xref="GI:124386395"
/db_xref="GeneID:4792130"
/translation="MSGAAIEGARAACRASGMRGVASAARSMRDACDVCDGGDPGPAH
DATTMSVVPARRRRGSRAAYAMMSETRTIGGGAKRAGDSPRARCARRTAVAPARCASH
ARRRSPGNRCHARRGSHSPDAGAASHRTGAAAAGERDAIDRGRAGGAAGPTHAGRAPP
RLRARVARAVPASIMTRYARTPRALCRARQAHPMQPPSPRELN"
gene complement(289213..292875)
/gene="cobN"
/locus_tag="BMA10229_A0277"
/db_xref="GeneID:4791705"
CDS complement(289213..292875)
/gene="cobN"
/locus_tag="BMA10229_A0277"
/EC_number="6.6.1.2"
/note="with CobST catalyzes the formation of cobyrinic
acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in
an ATP-dependent manner; involved in porphyrin and
chlorophyll metabolism; vitamin B12 metabolism"
/codon_start=1
/transl_table=11
/product="cobaltochelatase subunit CobN"
/protein_id="YP_001026279.1"
/db_xref="GI:124385478"
/db_xref="GeneID:4791705"
/translation="MHLLRTTPGGFVDDTAGVVRIDQRPADIVILSSADTTLSLLASA
VPTLGEGFPSVRLANVTFLRQPASVDFYVDDVLRHARVVVIDHLGGEAYWPYGIEQAV
ALAARAGQKLAMFSGDLQEDPNLIAKSTVAPELCRQWWRYLREGGPANAQALLRSIAH
HALAAALEREGLNPLPIAVTSLKDAMSRAVVDALCADANVSLVLNTTAFAAGALDAAE
PEVLAGDAPVLQVILSGGNRDAWLADPHGLNARDIAMHVALPEVDGRIVTRAVSFKGL
AYRCPHTEVDVVRYQPDDERIAFVAELSRRWCRLRTLENAHKRVALVLANYPASEGRI
GNGVGLDTPASALAVLAMLRDEGYRVGELPDDGDALLARITAGVTNDPATRALRPALQ
SYPLDDYLRRFAQLPQAARDALNARWGPPEADPALRQRRFPIAGWRAGHVFVGVQPSR
SRGDDDYANYHDADLVPPHAYLAFYFWLRDAFRIDALVHVGKHGNLEWLPGKSVALSD
ACWPDLILGPMPHLYPFIVNDPGEGSQAKRRAQAVIVDHLMPPLTRAENYGPLQDLER
QVDEYYDALMVDARRAKVLRETILATIVEHKLHEELSIAPPAGRDAEDALLTRVDAWL
CELKEAQIRDGLHTFGSSPRGRQRRDTLAALARFPSGDGRGERAGLIGALARDLALGE
AFDPLASDWAAPWTGPRPAALGAMSDEPWRHAGDTRERLEALASRLIERRCGDGSHAG
EGGGAPSGASRFAAPEYAAAHWPHAHAVLERIVRDVLPCLDACGDEELRQLRRGLEGR
FVPPGPSGSPSRGRPDVLPTGRNFYSVDTRAVPTQAAWTIGLKSAQQLVERHLQEHGD
YPRAVGLSVWGTATMRTGGDDVAQALALLGVRPKWAHGSHRVTDFEILPIEIFDRPRI
DVTLRVSGFFRDAFANVMHLFDAAVQAVAELDEPEHLNPVRARVRREADALVARGMPA
DEARRRAGWRVFGARPGGYGAGLQALIDGRRWQTDADLAHAYRNWGGYAYAQNSAGEA
AHDAFGARLATIDAVVQNQDNREHDLLDSNDYYQFQGGMAAAVRHASGRQPGLYHGDH
SNPAAPRIGTLREEIARVIRSRVVNPKWIDGVKRHGYKGAAEIAATVDYLYGYDATAR
VVSDHQYALVADAYLHDADTRAFLERHNPHALHGICERLVEAMQRGLWQAPGAHRDAI
EGYLLASEQRLEGGRR"
misc_feature complement(289237..292875)
/gene="cobN"
/locus_tag="BMA10229_A0277"
/note="cobaltochelatase subunit CobN; Reviewed; Region:
cobN; PRK05989"
/db_xref="CDD:180340"
misc_feature complement(<292420..292704)
/gene="cobN"
/locus_tag="BMA10229_A0277"
/note="CobN subunit of cobaltochelatase, bchH and chlH
subunits of magnesium chelatases, and similar proteins;
Region: CobN_like; cd10150"
/db_xref="CDD:199903"
misc_feature complement(<290959..292359)
/gene="cobN"
/locus_tag="BMA10229_A0277"
/note="CobN subunit of cobaltochelatase, bchH and chlH
subunits of magnesium chelatases, and similar proteins;
Region: CobN_like; cd10150"
/db_xref="CDD:199903"
misc_feature complement(289606..>290436)
/gene="cobN"
/locus_tag="BMA10229_A0277"
/note="CobN subunit of cobaltochelatase, bchH and chlH
subunits of magnesium chelatases, and similar proteins;
Region: CobN_like; cd10150"
/db_xref="CDD:199903"
gene complement(292942..294015)
/gene="cobW"
/locus_tag="BMA10229_A0278"
/db_xref="GeneID:4792591"
CDS complement(292942..294015)
/gene="cobW"
/locus_tag="BMA10229_A0278"
/note="identified by match to protein family HMM PF02492;
match to protein family HMM PF07683; match to protein
family HMM TIGR02475"
/codon_start=1
/transl_table=11
/product="cobalamin biosynthesis protein CobW"
/protein_id="YP_001026280.1"
/db_xref="GI:124384437"
/db_xref="GeneID:4792591"
/translation="MQMRKIPVTIVTGFLGSGKTTLLRHILQHAGGRRIVVIVNEFGE
LGIDGEILKGCGVGCDEAGREVDGRLYELANGCLCCTVQEEFYPVMEQLVERRAHIDH
VLIETSGLALPKPLVQAFNWPSIKNGFTVDAVLTVVDAPATARGQFAENPTAVDAQRR
ADPNLDHESPLHELFADQLSSADLVIVNKTDLLDDAALAAVEATIRDEVPPQVKLVRA
RRGELDLATLLGLNAASEETIHLRHDHHGSADDADHHHDEFDSVVVEARVSSREAALG
ALGALVEAHAIYRVKGFAALPGVPMRLVVQGVGRRFDSYFDRRWRDGEAPASRFVLIG
EDLDAAALQRAFDAALAAHGQAA"
misc_feature complement(293011..294009)
/gene="cobW"
/locus_tag="BMA10229_A0278"
/note="cobalamin biosynthesis protein CobW; Region: CobW;
TIGR02475"
/db_xref="CDD:162874"
misc_feature complement(293365..293997)
/gene="cobW"
/locus_tag="BMA10229_A0278"
/note="CobW/HypB/UreG, nucleotide-binding domain; Region:
cobW; pfam02492"
/db_xref="CDD:202255"
misc_feature complement(293011..>293157)
/gene="cobW"
/locus_tag="BMA10229_A0278"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; pfam07683"
/db_xref="CDD:203723"
gene complement(294111..295415)
/locus_tag="BMA10229_A0279"
/db_xref="GeneID:4793563"
CDS complement(294111..295415)
/locus_tag="BMA10229_A0279"
/note="identified by match to protein family HMM PF03824;
match to protein family HMM TIGR00802"
/codon_start=1
/transl_table=11
/product="high-affinity nickel-transport protein"
/protein_id="YP_001026281.1"
/db_xref="GI:124383860"
/db_xref="GeneID:4793563"
/translation="MPASPPSDAARFGARRERACRIHRERARRERRAAADACRRERST
GAAGEHVHCTRCRACWHSSRLSTVRKGSAMLESFLRLFNDSPAELRSKIVGIYAMLIA
FNVGAWAWAFAAFHGQPVLLGTALLAYTFGLRHAVDADHIAAIDNVTRKLMHEKKNPL
GAGLFFSLGHSSVVILMTVAVALTAATLAERFEGMKAWGGAIGTSVSAFFLLVLAFAN
LLILISVYRTFRAVRRGEPLVEQDLDILLNQRGFFARIFRPLFAIVSRSWHLYPIGFL
FGLGFDTATEIALFGISATQAHGGLSFWSVMALPVLFTAGMTLVDTTDGIMMMGAYRW
AFVRPIRKIYYNMTITFVSVLVAIVIGGIEALALIGGKLALKGGVGFRRDGGRTLRRA
RLLRDRPVRRELDRLRAHLPDQALRRHRRDALRVRPARGASP"
misc_feature complement(294354..295043)
/locus_tag="BMA10229_A0279"
/note="High-affinity nickel-transport protein; Region:
NicO; cl00964"
/db_xref="CDD:186285"
gene 296285..296737
/locus_tag="BMA10229_A0280"
/db_xref="GeneID:4791122"
CDS 296285..296737
/locus_tag="BMA10229_A0280"
/note="catalyzes the formation of cobalt-precorrin 4 from
cobalt-precorrin 3"
/codon_start=1
/transl_table=11
/product="cobalamin biosynthesis protein CbiG"
/protein_id="YP_001026282.1"
/db_xref="GI:124385974"
/db_xref="GeneID:4791122"
/translation="MMRVALGIGCRAGRPAEAIEAAIRAALARLPQASLADVGVVATL
DAKAREPGLVACCARHGWPLVAFSRDEIAAHLARLAGLARAGSDSGSGSGVGASPAPG
APSCAAARARFGVDGVCEPCACLAAPNGALIVRKLALDGVTAALAGPL"
misc_feature 296285..296734
/locus_tag="BMA10229_A0280"
/note="cobalamin biosynthesis protein CbiG; Provisional;
Region: PRK07027"
/db_xref="CDD:180798"
gene 296796..297398
/gene="cobO"
/locus_tag="BMA10229_A0281"
/db_xref="GeneID:4792007"
CDS 296796..297398
/gene="cobO"
/locus_tag="BMA10229_A0281"
/EC_number="2.5.1.17"
/note="catalyzes the formation of adenosylcob(III)yrinic
acid a,c-diamide from cob(I)yrinic acid a,c-diamide"
/codon_start=1
/transl_table=11
/product="cob(I)yrinic acid a,c-diamide
adenosyltransferase"
/protein_id="YP_001026283.1"
/db_xref="GI:124384247"
/db_xref="GeneID:4792007"
/translation="MKTDSESHQRMAERRRAGHEKKQAAATVEKGLLIVHTGNGKGKS
TAAFGMAVRMLGHGMRTGVVQFIKGALHTSERDFLGANAQCDFVTMGDGYTWNTQNRD
ADIATARRGWDEARRMIESGDYRMVILDELNTVLKYEYLPLDEVLATLAARDPALHVV
VTGRHAPDALVDAADLVTEMRLVKHPYKEQGVKAQRGVEF"
misc_feature 296802..297395
/gene="cobO"
/locus_tag="BMA10229_A0281"
/note="ATP:corrinoid adenosyltransferase [Coenzyme
metabolism]; Region: BtuR; COG2109"
/db_xref="CDD:225020"
misc_feature 296880..297356
/gene="cobO"
/locus_tag="BMA10229_A0281"
/note="ATP:corrinoid adenosyltransferase BtuR/CobO/CobP.
This family consists of the BtuR, CobO, CobP proteins all
of which are Cob(I)alamin (vitamin B12)
adenosyltransferase, which is involved in cobalamin
(vitamin B12) biosynthesis. This enzyme is a homodimer;
Region: CobA_CobO_BtuR; cd00561"
/db_xref="CDD:238314"
misc_feature order(296883..296885,296916..296918,296928..296930,
296940..296945,296949..296966,297009..297011,
297015..297020,297024..297029,297267..297269,
297306..297311,297315..297338,297342..297347,
297351..297353)
/gene="cobO"
/locus_tag="BMA10229_A0281"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238314"
misc_feature 296907..296927
/gene="cobO"
/locus_tag="BMA10229_A0281"
/note="Walker A motif; other site"
/db_xref="CDD:238314"
misc_feature order(296916..296918,296922..296930,296952..296954,
297186..297188)
/gene="cobO"
/locus_tag="BMA10229_A0281"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238314"
misc_feature order(296997..296999,297006..297008,297081..297083,
297195..297197,297207..297209,297285..297287,
297354..297356)
/gene="cobO"
/locus_tag="BMA10229_A0281"
/note="hydroxycobalamin binding site [chemical binding];
other site"
/db_xref="CDD:238314"
misc_feature 297171..297185
/gene="cobO"
/locus_tag="BMA10229_A0281"
/note="Walker B motif; other site"
/db_xref="CDD:238314"
gene 297403..299019
/gene="cobB"
/locus_tag="BMA10229_A0282"
/db_xref="GeneID:4790787"
CDS 297403..299019
/gene="cobB"
/locus_tag="BMA10229_A0282"
/note="identified by match to protein family HMM PF01656;
match to protein family HMM PF07685"
/codon_start=1
/transl_table=11
/product="cobyrinic acid a,c-diamide synthase"
/protein_id="YP_001026284.1"
/db_xref="GI:124386161"
/db_xref="GeneID:4790787"
/translation="MPACPALFVAAAASGQGKTSVTAALARHHRRLGRRVRVFKTGPD
FLDPMLLARASGARVYSLDLGMVGERGCRALLARAAAEADVILIEGAMGLFDGTPSSA
DLAQAFGVPVAAVIAAQSMAQTFGALAFGLAHFRPGLPFHGVLANRVGSERHAQLLRG
ALPGSIRWLGHLPRDARIALPERHLGLHQPDDVADLDARLDRAADAIAHTALAALPPV
VEFVCGDAANAEADAGDGGATIPAQDASRTAHRTATAARVAAGRGALAGATMRAAHGE
RAARSADAAAHETVDDALLDAAKRAGTGDGALSPSPDAGGAIGAIGTIRSTETTETTE
AVPSLVGRRIAIARDAAFSFIYPANLDQLEALGAELAFFSPLADEPVPDGSHALYLPG
GYPELHAARLAANATAARSIAAHVAAGRRVVAECGGMLYLSDALTDADGVTTPMLGLV
PGHATMQRRFAALGMQTLATRFGAMTGHTFHYSRLATPLAPVAAATRPDDGAAGEPVY
RHGPIVATYLHAYWPSNPRAAAALFAGDAP"
misc_feature 298432..299001
/gene="cobB"
/locus_tag="BMA10229_A0282"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyrinic Acid a,c-Diamide Synthase; Region:
GATase1_CobB; cd03130"
/db_xref="CDD:153224"
misc_feature order(298678..298680,298963..298965,298969..298971)
/gene="cobB"
/locus_tag="BMA10229_A0282"
/note="catalytic triad [active]"
/db_xref="CDD:153224"
gene complement(299036..299329)
/locus_tag="BMA10229_A0283"
/db_xref="GeneID:4791833"
CDS complement(299036..299329)
/locus_tag="BMA10229_A0283"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026285.1"
/db_xref="GI:124383566"
/db_xref="GeneID:4791833"
/translation="MSGAAHDTHDTRGPCAAAWRSGRRRARVARRLARFAAVPRAARP
RASARAMTACAVARRASAVRFAGGLRYTWIAKLRRLPPPSSPKRAASGAARLR"
gene complement(299326..300165)
/locus_tag="BMA10229_A0284"
/db_xref="GeneID:4793926"
CDS complement(299326..300165)
/locus_tag="BMA10229_A0284"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026286.1"
/db_xref="GI:124385545"
/db_xref="GeneID:4793926"
/translation="MAKKKLVYIWSLRNAAADKAGQQVDYKGGTRYMKSVLESLVDAL
NDTELGDAYSLERVIYDDDAGSPLDREKLAEYGFAYEPGKRWFYPPALRVQGRLVNDL
LLAIPSEYRREPLASPARPAGKRAFEARLRETLDALGADLVVLDGLLVILDELVRPGA
PYCRRIVNIHPGITRADSPYERRGAYATLDALFGARGQKVVDWKTGRTMPVEPLRMTG
ASFHYVDNGVDSGEVIHDVLNTEIDPDDTILELRWNNFNRSLFPALHEGLAIMAGLDA
RVA"
misc_feature complement(299410..>299676)
/locus_tag="BMA10229_A0284"
/note="Formyltransferase, catalytic core domain; Region:
FMT_core; cl00395"
/db_xref="CDD:241838"
misc_feature complement(order(299479..299481,299656..299658,
299662..299664))
/locus_tag="BMA10229_A0284"
/note="catalytic site [active]"
/db_xref="CDD:187712"
gene complement(300230..302488)
/locus_tag="BMA10229_A0285"
/db_xref="GeneID:4792479"
CDS complement(300230..302488)
/locus_tag="BMA10229_A0285"
/note="identified by match to protein family HMM PF00593;
match to protein family HMM PF07715; match to protein
family HMM TIGR01783"
/codon_start=1
/transl_table=11
/product="TonB-dependent siderophore receptor"
/protein_id="YP_001026287.1"
/db_xref="GI:124386268"
/db_xref="GeneID:4792479"
/translation="MKVRPSRPLCNLEQRKMEWATSTRVRAIAAGVAFYAAAAGHAQA
QAAQPGADARQPGGEAKADTAAGGTLPAISVSGAAERDASVGLVARRSMTGTKTDTPI
IEIPQTINVVTAQQIEATGATDINQAFRYIPGFSSYGSDNRSDWYAALRGFTPTVFVD
GLQVPNTINLSSWRVDPYMIDSIAVLRGPTSVLYGQGDPGAIVDVQSKLANGERIREL
GVQVGNYARKQLMFDIGDTIGKDGTLSYRIVGVGRDGNAQTGPLADQRVSFAPSLKWQ
PNADTSLTLAATYLQDWGDTSSNFLPSRGTVLPNPNGTISDDLYTADANFDHYRKKQW
SLGYQFEHKLNPVWTLRQNVRWMHLSLDDASVYGGGLDDADPTMATMTRYAGLFQFNY
SRFDVDNQAQAKFTTGPLSHTLLFGFDYNRQTTTDSEWLAKGPSLNLYRPVYTPIPSD
IFSGPNASRTDTKTTLNAFGLYVQDQIKWRRWVLTLGGRQDWTRTSQDDIANAASFRQ
NDHAFSGRVGLTYLGDYGLAPYLSYSTSFNPQIGLKLAGGGLATPTKGRQIEAGLRWQ
PPGKNLMLNAAVYQINQTNVAMSNPNDPTSSTFVQVGEVRSRGVELSAVGNLSRELSV
IAAYVYQDVKNVRANDNTLNKWPVDVPRPRQIASLWADWTWRTGPLTGFGVGAGVRYM
SAAAGAVDNSLTVPSYTLFDAALHYELRNWRFALNATNLFNRRYVAGCQSDAVCMYGN
QRTVIATAKYNW"
misc_feature complement(300239..302311)
/locus_tag="BMA10229_A0285"
/note="ferrichrome outer membrane transporter;
Provisional; Region: PRK10044"
/db_xref="CDD:182206"
misc_feature complement(300233..302167)
/locus_tag="BMA10229_A0285"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature complement(order(301868..301894,301928..301960,
301997..302020,302030..302047,302081..302110,
302138..302167))
/locus_tag="BMA10229_A0285"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature complement(order(301319..301321,301406..301408))
/locus_tag="BMA10229_A0285"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene complement(302488..304041)
/gene="pvdA"
/locus_tag="BMA10229_A0286"
/db_xref="GeneID:4791759"
CDS complement(302488..304041)
/gene="pvdA"
/locus_tag="BMA10229_A0286"
/EC_number="1.13.12.-"
/codon_start=1
/transl_table=11
/product="l-ornithine 5-monooxygenase"
/protein_id="YP_001026288.1"
/db_xref="GI:124386576"
/db_xref="GeneID:4791759"
/translation="MSAARRGRAWRGPSTMAASGASMNGAVRITFSSGRRRPRAGHTV
KGIRDMQRDTVFDLIGVGFGPSNLALAVRLAEAGERAAFAHCYVERQPAFGWHRGMLL
DDCRMQISFLKDLVTLRDPKSRFTFINYLYEHGRLSEFVNLKNFYPTRVEFHDYLSWV
ANAFDERVHYGETVTAIEPVAAPGAPGEIDALRVFSKGADGRERQRVARALSVGVGGA
PSVPDAFAALGPECVVHSSSYLTSIERLVGAPGAHARKRIAVIGAGQSAAEVFVDLAR
RFPHVEASLVIRSGALKPADDSPFVNEIFNPAFTDVVYAQPASGRRSLIERFRDTNYA
VVDRPLIEQIYEMLYLQRVAGEAPGAPRHRLLANTAVESAARTAHGQVELALRDRLTG
DARTERFDGLVLATGYRRDTHLPLLEGLAPHLGDALAAGDVARDYRLATPAHFKPRIY
LQGCCEDSHGLSDTLLSVLARRADEIAASLADAADTTEYEEADPAAGRARPRHENNGV
SDGRLAIAL"
misc_feature complement(302812..303882)
/gene="pvdA"
/locus_tag="BMA10229_A0286"
/note="L-lysine 6-monooxygenase (NADPH-requiring); Region:
K_oxygenase; pfam13434"
/db_xref="CDD:205612"
misc_feature complement(303499..303861)
/gene="pvdA"
/locus_tag="BMA10229_A0286"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene complement(304038..309236)
/locus_tag="BMA10229_A0287"
/db_xref="GeneID:4791526"
CDS complement(304038..309236)
/locus_tag="BMA10229_A0287"
/note="identified by match to protein family HMM PF00501;
match to protein family HMM PF00550; match to protein
family HMM PF00668; match to protein family HMM TIGR01733"
/codon_start=1
/transl_table=11
/product="non-ribosomal peptide synthetase"
/protein_id="YP_001026289.1"
/db_xref="GI:124383967"
/db_xref="GeneID:4791526"
/translation="MTPPDLLSLAARFARLPDTQRKQFLAKLGDAGIDFRMLPIPPRE
DRAASVPASFAQTRLWLHARLLGESAAYHITERLRLDGGLDANALRLSCDALIARHEA
LRTTFAEGAAGVLQTVHAPMRCPWRFTDLADASAGSREQRAAAIAERDEAEPFDLAHG
PLVRAHLIRLDAATHWFVLTTHHIVSDGWSADVMLAELSSFYRSYATGDAVSLAPLPV
QYADYALWQRRWLDAGEGERQLAYWRATLDASRDALLLPGAATRPAQRGASGARHAFD
ISAELARRMRALAQARRATPFAVLLAALATLLARASGETGIRIGVPSANRERGETVGL
IGFFVNTLTLAASTPATLAFDALVDATQRGLIDAQSHQDVPFDQVVDALGVARSASHH
PLFQVMAAYGARRVLPSFAEVRATELPSGMPYAKFDLALSFDERDDGGLDARFVYATD
LFDADAIERFAARYVELLAHALDTPGAAIGDLQWLPEAERRQLAAWNGQTHDFTGRAS
PARAGAGAAVPRERAGQAGGEPFVPVHDRIAQHARRRPDARGVADIERALTRGEVDAR
ATRLAKRLVAAGVGAEMRVGVALSRSVDLLVGLIAALKSGGAFVPLDPSHPRERLAQM
LEDAQIAHVITERGSVDALPLAGATRAWLVDDAIADAEIDGVALPAVSPHQAAYVIYT
SGSTGKPKGVVVDHGAFARHCEAIAARYGATERDVFMLFQSVNFDGAHEGWFSQYMSG
AAVAVTADTLWPPARTCALAAREGVTMTYVPPGCATQLAEWALEHGAPPSLRSITVGG
EATSREAFALMRRAFPNARVVNGYGPTETVITPMLWMFAPGDDPAKLADAAYLPIGTL
VGARTAHVLDARLNPLPVGVIGELYLGGEGVGLARGYLGRAALTAERFVPDPYGAPGA
RLYRTGDLVRRRADGVFDFIGRIDHQVKLRGLRIELGEIEAQLAAHDDVREAVAVVFG
EGAHARLAAFVELTGDARARARRADAAELDAHLRRTLPDYMVPAHIVVLDALPRNANS
KVDRAALPEPAHVARAYEAPDGELETALAEIWREVLGVERVGRADHFFELGGHSLAAV
RVATRVAERLARDVPVRALFEAPILAPYAQRVAAAAPAHAPQRAGSASYAPDADGVLP
LSAAQRGLWFLWRAQPDSAAYNIPVALRLRGALDVDALADALAHAAVRHPALRTRIVA
RADGAPGQRIAPARRIELPVVDLRADARIADDDARLAAAIALTDADALAPFDLAADAP
LWRARVIRLGAHDHVLSLVVHHIVSDGQSIDLWLDAVRAAYVARRADEPATAAARAAA
DRRTDRHAGSRAASLAPARAKEAPAQSATIAPIQAPADAPQPAPDAPVLPAAAPHARL
AFWREALAGAPSHALPPPRAGRACAPRWDAGRLAFEFDAALVRRARAMALDAHATLPM
LLHAALNAAFYRATGATDQPVGVLASTRELTGDAAERALGLFINAVVVRTRLSGADTP
ATLVAAVRDAALAAYAHADAPFCDVVAALRAPRTVNGNPLFQVMFNYLRLAGAAARDW
AGLAVDAFNDVRHRVVFELELDIVEHPDGRVTGAFSYAAERVDGAFVAALAADYLDVV
RGFVDAPARALGACAARFPLASHEAYVPPPPAAADARAAARAARALAELWRASLGHAA
PAPEANLFEAGATSFDVVRFVDAARSAGFALAIADVFAAPSLAALGERAAHTAGQPAT
QARDAD"
misc_feature complement(308217..309089)
/locus_tag="BMA10229_A0287"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:144314"
misc_feature complement(306354..308303)
/locus_tag="BMA10229_A0287"
/note="Non-ribosomal peptide synthetase modules and
related proteins [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: EntF; COG1020"
/db_xref="CDD:31223"
misc_feature complement(307857..308129)
/locus_tag="BMA10229_A0287"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:205919"
misc_feature complement(306333..307562)
/locus_tag="BMA10229_A0287"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature complement(305904..306068)
/locus_tag="BMA10229_A0287"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
misc_feature complement(304461..304694)
/locus_tag="BMA10229_A0287"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:205919"
gene complement(309285..319169)
/locus_tag="BMA10229_A0288"
/db_xref="GeneID:4791048"
CDS complement(309285..319169)
/locus_tag="BMA10229_A0288"
/note="identified by match to protein family HMM PF00501;
match to protein family HMM PF00550; match to protein
family HMM PF00668; match to protein family HMM TIGR01720;
match to protein family HMM TIGR01733"
/codon_start=1
/transl_table=11
/product="non-ribosomal peptide synthetase"
/protein_id="YP_001026290.1"
/db_xref="GI:124384786"
/db_xref="GeneID:4791048"
/translation="MTSFPTALHHRIHALARLDPDAPALASFAPDTVRLTRGELDERA
ARLAAQLRAAGVGAEVPVGVCVARSCDLFVALLAVMKAGGAFVALDPRHPAARLDWVA
RDAGLAHGIVDASADAAMRARFARCFDVGGVAAADPAAPREHGGDVHPRAAAYMIYTS
GSTGTPKAVVVEHGPLAAHGDALAESLPIGPDDRVLHFASVNFDVAIEAWLVPLAVGG
SVVISDPPPFTPDAAHALISRERVTNTTLPPAYLREFAAVCAREGVPPSLRVLLFGGE
AMSQDAFDEIRRVFPAIRLVNGYGPTETVISPMLWPVAPGTTPALDAGNGYASLPIGW
PIGRRVARVERADGTVARGEAGELLLGGACLARGYHGRAALTAERFLPDPAGEPGARI
YRTGDLARERADGAFDYLGRIDDQVQVRGVRVEPAEIAACLLTHPGVRDAGVLAETAG
GRTQLIACVALAAPPRETPSGGDAPPDDDALRAHVAAHLPAAWLPHRFVRFDKLPYTL
NGKLDRVALRDAVAARPAEAAADVDAPRTDTERRVAALWQRLLNDPAPIGRVDRFFAR
GGDSLAAMQLQTAIRLDWRVNLRLDTLFDDAPLAELAARIDAAEREARQPAAIGTTAR
RAIAADAIDARATGDARATGQMGRTGAAGEATEAAGALERPASFAQQRFWVLARTQDA
GAAYHVSFHWDIDGALDLGTLQRALDMLIARHEAWRTTLVENDDGVVLQRIHAALPVR
IAAVDLRGEAGASRAARLAELTERHAGAPFDLSDGPLVRALLVTLADGAQRFLLTTHH
AVSDGWSSRCAFAELTAAYAALAEGRAPELPALPIQYADYAQWQRDALDAHETARELA
YWRGALDGAPAPLALPLDRPRAAERDYRGGRLARRLSPAASDAVRAAARRLHASPFTV
LLAAFDAWLFRLTGERDLVVAAPIAQRARPETAPLVGLFLNTLALRARVSPAQSFESL
VASVRDAAFGAFAHQDVPFDKVIDAVKPPVRRGDEWLRVKFAQQFDLECRASLPGAAV
RMAPGLDTAARFDYALDFTDDPRGIEFVAAYARDGIDEATAHAWLDSFAALVEDAVRE
PRRPIAALAVAQAGAPCALIAGRPLATAPDVLALFAREAAEHPHRVALADADTRLTFA
ELDDASNRVALALRRDAARDEAPGAETPVAICIERSARFVVAFLGVLKSGAYAVPLDP
ASPRERIAAALAACGACRMLAAGALDALGEFDGVAVQDIDACGHDASLANAAAPRVPP
QPEQAAYLIFTSGSTGAPKGVVVPHRALADYVAGMLDELAFAPHASMAMVSTVAADLG
HTTLFGALCSGRTLHLLPAQAAFDPDRFAHEMATRKVGVLKIVPSHLHALLDAQRAAD
VLPAHALVTGGEALPWALVERIAALKPDCRVINHYGPTEASVGALVCDTSAPAQADLR
AAAASSPGEAARGVPLGRPLPNAHACVLDAYGSSVPVGAIGELYLGGPGLARGYLGRA
AASAERFVPHPHVAGARVYRTGDRVRLRADGRLDFLGRLDDQVKIRGYRVEPGEVSAA
LRALPGVAQAETLALEHEGRLRLAAFATPEAGARIAADALRDALAARLPDYMVPAALV
VLDALPVTANGKIDRAALRARAAAPAPATAGDEDAPQGPIEATLAEVWRDVLKAARVG
RHDNFFELGGDSILVLQVIARARKRGVKFTPKQLFDGPTLAELARVAVAIEAAAPASG
AAHGAAIGANAAAARRDEAVLTPAQLRFFALDIPRRGHWNQSIALDVAGAFDFDAFAR
AFDALLTHHPVFRERFAPTGDGGGWQRSAAPRAFDTLPLAAAAARDEADALAQFDALQ
ATLDLTHGPLACAFAAVLPSGATKLYLAIHHAIVDGVSWRVLLDDLDAAYRAACERRA
VRLGPTGASASEWAARLARAARDPAGPFAGELPYWAALAAPHDDLRPDRPDAAATNAH
ADVVIQTLDAALTREVLTDANAAYRTQAVELLIAALVAALGQHTGAAACRLELEGHGR
EALFDELDASRTLGWLTSHYPVAFAVEATPAATLAGVKDALRAVPNKGLGFGVLRHYG
DDATRAALARVARPRVTFNYLGQFDAPRDAALVPRFGGAGRERDPAGPLGNALAIHAY
VDANGERALKVHWVYGATQFDRATIDALAARFDAALRALAAACRARVAERGAGATPGD
YPLARAGGLTQAALDRLPFDARAIDDIYPLSPMQQGILFHSLFAPERATYVNQLVATL
VDPDVERLRAAFDAAVPRHDILRTGFAAHEAAPMQIVHRHARMPVEIVDWRGAHASPA
ALDTALDAWLAADRARGFDLAAPPLMRVTLIRTDDADWRLVWTRHHLLLDGWSTARLF
ADVLSDYIEPPRANPFAAPARTRYRDFIAWLARRDAQADRAFWLGRLARLDEPTHVAE
RARGASAAAHEAAGRANWRATLPAADTARIGEAARRMKVTVNTIVQGAWALALQRITH
RRAVAFGATVAGRPHALPDVDTVLGLFINTLPVITAPLPQLAARDWLASLQRDNAAAL
EHAHTPLYEIQQWAGLGGALFDTLVVFENYPVDEAWQGRDARALQKRDLRNIEATDFA
VTLVIEAGDTLAIDYGYDPARIGPARVEALHRAFAACIAGLVDHPDAPLGTISCASAD
DLALIARANATELDWPAAQRAPLFAQFEAAARARPDAIALECLASSDGGDGARAQMRY
GELDAKADRVAAALAASGVRPDSVVALCVERSFDMVVALVGTMKARAAYLPVDPDYPA
ERIAYLLGDAKPPVVITQAHLRARVDAALAGADAAVVTVDELLARAAGAEPEAERVAA
AADVAPGQLAYLIYTSGSTGQPKGAGNTHGALANRIAWMQRAYRLAPDDVVLHKTPFG
FDVSVWEFVWPLAVGAKLAIAAPGDHRDPARLVAAIDAHRVTTLHFVPSMLAAFVAYL
DDFGAAARCASVRTIVASGEALAPELVARVAALLPHAQLHNLYGPTEAAIDVSHWRCT
ADDAAADAVPIGHPIANLRLHVLDAALHPAPVGATGELYLGGAGLARGYLGRAALTAE
RFVPDPFVPGARLYRTGDLARRRADGALDYLGRLDTQVKLRGQRIELGEIEALLRATD
GVRDAVVIVRDERLVGYVACATPAGFDAAAQIERLRARLPAYMVPAQLVALDALPVTP
NGKCDRRALPAPVFDARVVDAPRTATERALAAIWQRVLTLPELGRDDDFFALGGHSLL
AAQANAQANLQWSLTLPLRTIFDERTLARCAAAIDRARDAGRERDAAGAIDALLGELE
AQ"
misc_feature complement(317838..318968)
/locus_tag="BMA10229_A0288"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature complement(317637..>317981)
/locus_tag="BMA10229_A0288"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
misc_feature complement(317385..317549)
/locus_tag="BMA10229_A0288"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
misc_feature complement(316278..317177)
/locus_tag="BMA10229_A0288"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:144314"
misc_feature complement(314499..316448)
/locus_tag="BMA10229_A0288"
/note="Non-ribosomal peptide synthetase modules and
related proteins [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: EntF; COG1020"
/db_xref="CDD:31223"
misc_feature complement(315948..316217)
/locus_tag="BMA10229_A0288"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:205919"
misc_feature complement(314484..315740)
/locus_tag="BMA10229_A0288"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature complement(314049..314216)
/locus_tag="BMA10229_A0288"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
misc_feature complement(313041..313928)
/locus_tag="BMA10229_A0288"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:144314"
misc_feature complement(312549..313037)
/locus_tag="BMA10229_A0288"
/note="non-ribosomal peptide synthase domain TIGR01720;
Region: NRPS-para261"
/db_xref="CDD:211683"
misc_feature complement(311619..312530)
/locus_tag="BMA10229_A0288"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:144314"
misc_feature complement(309816..311840)
/locus_tag="BMA10229_A0288"
/note="Non-ribosomal peptide synthetase modules and
related proteins [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: EntF; COG1020"
/db_xref="CDD:31223"
misc_feature complement(309795..311036)
/locus_tag="BMA10229_A0288"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature complement(309633..>309938)
/locus_tag="BMA10229_A0288"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
misc_feature complement(309387..309560)
/locus_tag="BMA10229_A0288"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
gene 319798..321486
/locus_tag="BMA10229_A0289"
/db_xref="GeneID:4793189"
CDS 319798..321486
/locus_tag="BMA10229_A0289"
/note="identified by match to protein family HMM PF00005;
match to protein family HMM TIGR01194"
/codon_start=1
/transl_table=11
/product="cyclic peptide ABC transporter ATP-binding
protein"
/protein_id="YP_001026291.1"
/db_xref="GI:124385083"
/db_xref="GeneID:4793189"
/translation="MKHARRLIVALLKRSRGAFAIALAACVLNGASSVLLVATLSRAL
SEPQAADASLAWRFGLCAVIALVTRIVTGVLFARLSQDTMAQLREHVARRVAAAELQD
VERIGAAPVQSVLTDDATNVSMLFFALPNLVMHGSIVFGCLGYLAWLSWPVCLLAVAA
ILVGSLGYHAGDKRAIAWLEDAGRSQDKLFGYLGALFSGAKELKLHQARSRQFVDGQL
GAAIAEVRDHRRRAFSAYAIGVGWIVFLFYVFLGVAAFWPALGVRGDGPAASGYVVVF
LFMLLPLDGLLNNVPTLNAARVSLERIEKLMAQFGALRTAPPPDENASHEPFDTLALR
GVTHSYFHERDERMFRVGPIDLTLKPGELVFLVGGNGSGKTTLAKVLTGLYEPEGGVI
ELDGKPIGLAERAAYRERFSAVFNDFHLFDALLGIVDPNDAARAQADARANALVAKLS
LDHKVQVVDGAFSTRALSTGQRKRLALVVAYLEDRPLYLFDEWAADQDPAFKAVFYEQ
LLPELRARGKTVIVISHDDRYFPIADRVLKLDNGIIVSETFGARHAALANGTEG"
misc_feature 319801..321441
/locus_tag="BMA10229_A0289"
/note="cyclic peptide transporter; Region:
cyc_pep_trnsptr; TIGR01194"
/db_xref="CDD:130262"
misc_feature 320788..321423
/locus_tag="BMA10229_A0289"
/note="The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the ATP-binding
cassette (ABC) superfamily of transport proteins. The
ABCC subfamily contains transporters with a...; Region:
ABCC_MRP_Like; cd03228"
/db_xref="CDD:72987"
misc_feature 320899..320922
/locus_tag="BMA10229_A0289"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72987"
misc_feature order(320908..320913,320917..320925,321043..321045,
321268..321273,321370..321372)
/locus_tag="BMA10229_A0289"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72987"
misc_feature 321034..321045
/locus_tag="BMA10229_A0289"
/note="Q-loop/lid; other site"
/db_xref="CDD:72987"
misc_feature 321196..321225
/locus_tag="BMA10229_A0289"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72987"
misc_feature 321256..321273
/locus_tag="BMA10229_A0289"
/note="Walker B; other site"
/db_xref="CDD:72987"
misc_feature 321280..321291
/locus_tag="BMA10229_A0289"
/note="D-loop; other site"
/db_xref="CDD:72987"
misc_feature 321358..321378
/locus_tag="BMA10229_A0289"
/note="H-loop/switch region; other site"
/db_xref="CDD:72987"
gene 321781..322548
/locus_tag="BMA10229_A0290"
/db_xref="GeneID:4792944"
CDS 321781..322548
/locus_tag="BMA10229_A0290"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026292.1"
/db_xref="GI:124383700"
/db_xref="GeneID:4792944"
/translation="MRRAERGRPRPPVAALTRRSPSPARTASPRVPSHLVAVQRRSPA
HAVRRRSLVSFTHDTFRRSLMSPTALLVPTFTHMLQSLSAWLDKAAAHQRALGAEPDD
VLTKRLAADMFALAAQIRFTAFQAQEPVYRLRGDALPESLLEVRRAGWQADAAPGSLR
DAQACLADARALLAGLAPHALDEGAERPIALELPNGAVFDMTGEQYLRDWALPQFYFH
AIAAYAILRHHGVALGKPDYVSHMFAYLRPGTMPQDR"
misc_feature 321979..322497
/locus_tag="BMA10229_A0290"
/note="Domain of unknown function (DUF1993); Region:
DUF1993; pfam09351"
/db_xref="CDD:204207"
gene complement(322824..324020)
/locus_tag="BMA10229_A0291"
/db_xref="GeneID:4790669"
CDS complement(322824..324020)
/locus_tag="BMA10229_A0291"
/note="identified by match to protein family HMM PF01497"
/codon_start=1
/transl_table=11
/product="iron ABC transporter substrate-binding protein"
/protein_id="YP_001026293.1"
/db_xref="GI:124384587"
/db_xref="GeneID:4790669"
/translation="MTAWARRAARFARLPIGGRTAVLVRAMRAADAEPATFWTPAAPV
TRAGRLPSPSRPMRGARAARPLAAVAAFAALVAGTLAFAPAAHAGEPSAVCRPLADDP
TVSQFSRTLPARPARIVVLEFMFAEDLAALDITPVGMADPAYYPIWIGYDDARFARVS
DVGTRQEPSLEAIAAAKPDLILGVGLRHAPIFDALSRIAPTVLFKYSPNYIEDGRQVT
QYDWACAILRTIGCLTGRARDARAVQARVDAGLARDARRIAAAGRAGERVAWLQELGL
PDRYWAFTGNSASAGIARALGLEPWPGEPTREGTAYVTSEDLLKQPDLAVLFVSATEP
GVPLDAKLDSSIWRFVPARRAGRVALVERNIWGFGGPMSALRLADEMTQRVLALPKPA
AGAPPR"
misc_feature complement(322884..323684)
/locus_tag="BMA10229_A0291"
/note="Fe3+-siderophore binding domain FhuD. These
proteins have been shown to function as initial receptors
in ABC transport of Fe3+-siderophores in many eubacterial
species. They belong to the TroA-like superfamily of
helical backbone metal receptor proteins...; Region: FhuD;
cd01146"
/db_xref="CDD:29749"
misc_feature complement(322947..323669)
/locus_tag="BMA10229_A0291"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:144914"
misc_feature complement(order(323178..323180,323460..323462,
323523..323528,323577..323579))
/locus_tag="BMA10229_A0291"
/note="siderophore binding site; other site"
/db_xref="CDD:29749"
gene complement(324017..324823)
/gene="fhuF"
/locus_tag="BMA10229_A0292"
/db_xref="GeneID:4793531"
CDS complement(324017..324823)
/gene="fhuF"
/locus_tag="BMA10229_A0292"
/codon_start=1
/transl_table=11
/product="ferric iron reductase FhuF"
/protein_id="YP_001026294.1"
/db_xref="GI:124383986"
/db_xref="GeneID:4793531"
/translation="MSARMRATRFSTFAPAAIAHYLEHVWLGAPDACDEPALAPDGAE
PADLISAASLALRRDALVGAMVALYGGDARAHARALVSQWSKYYFNLAASAGFAAALL
LGRPLDMAPQRMRVALRGGMPVALLFEADALRPAQAEPASRYAALVDHLRATIDTLAV
LAKLSPRVLWANAGNLLDYLFEQCAHAPRAGADAAWLFGPVDSRGEANPLRLPVRRVK
PCSARLPDPFRARRVCCLRNEIPGEDQLCGSCPLLLTMCDDALAKQDAAH"
misc_feature complement(324065..324598)
/gene="fhuF"
/locus_tag="BMA10229_A0292"
/note="siderophore-iron reductase FhuF; Region:
Fe_III_red_FhuF; TIGR03951"
/db_xref="CDD:188466"
misc_feature complement(324152..324580)
/gene="fhuF"
/locus_tag="BMA10229_A0292"
/note="Ferric iron reductase FhuF-like transporter;
Region: FhuF; pfam06276"
/db_xref="CDD:191486"
misc_feature complement(324065..324133)
/gene="fhuF"
/locus_tag="BMA10229_A0292"
/note="FhuF 2Fe-2S C-terminal domain; Region: FhuF_C;
pfam11575"
/db_xref="CDD:152011"
gene complement(324820..326940)
/locus_tag="BMA10229_A0293"
/db_xref="GeneID:4791067"
CDS complement(324820..326940)
/locus_tag="BMA10229_A0293"
/note="part of the FhuBCD ATP-dependent iron (III)
hydroxamate transporter involved in the high-affinity
transport of Fe(3+)-ferrichrome"
/codon_start=1
/transl_table=11
/product="iron-hydroxamate transporter permease subunit"
/protein_id="YP_001026295.1"
/db_xref="GI:124385959"
/db_xref="GeneID:4791067"
/translation="MTALAVRKRLRHGGRAPESSPASRAAAPGRVGAIAGALVALIVV
TAAMRLAPELRAWLAAPAGGDAAQLAHIMLFDLAAPRVAAALVAGGCLAAAGALLQSL
TRNPLAAPDLLGITGGAQLGLIAAMLVPALAGHASVPLLFVCGLAAAACVSAAAGGWR
ATPLRLILAGSVCMLLFSAVTTLLLAFFEQTVVGASLWASGSLYQPGAAGLRDALLWL
VAPLAALPLVIRPLDPLALGDDAAAAAGVRVDATRLAGTVVAVGFASVAVSIAGPLSY
IGLIAPNLIRQMRGAKASRLGALVPLAALAGGALVLVTDSAVLALGLDATLSTGVAIA
FVGTPLMLAMIRRGAAWSGAAQQPAHVRAGTRGGARLVRALAVLPWPAVAVLLLAAGA
AVLVVGASFGPVWIGPGRWFAALAQRDDLARTVLDLRAPRLLCALLAGALLGASGVLM
QSIVRNPLAGPEVLGVTQGAGLATLATLVAWPLAAHGTLVAASLAGGGATLVLTLALN
RRHRYAPLAVALTGIVIGTLWTTLAQWLITQESVQPARFVVWLVGGTYGRSWGEAAAL
LPWGVLAVPALALLARPLDLLALGDEQAAALGLPIAALRPLVLTIATLAACAAVAAVG
PVGFIGLMAPHLAAMLGARAHATRLWLAAAWGALVLAAADIAARTLLAPREIPAGVLT
ALIGAPYLLALLIAEARRERRGGR"
misc_feature complement(324856..326643)
/locus_tag="BMA10229_A0293"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:182563"
misc_feature complement(325900..>326643)
/locus_tag="BMA10229_A0293"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cl00462"
/db_xref="CDD:207058"
misc_feature complement(order(326341..326343,326350..326355,
326386..326388,326392..326397,326404..326406,
326413..326418,326425..326430,326437..326442,
326446..326448,326605..326607,326620..326622,
326626..326628))
/locus_tag="BMA10229_A0293"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(324859..325593)
/locus_tag="BMA10229_A0293"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(325006..325008,325027..325029,
325150..325158,325162..325179,325183..325188,
325192..325200,325204..325209,325570..325578,
325588..325590))
/locus_tag="BMA10229_A0293"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(324859..324861,324868..324873,
324880..324882,324889..324894,324901..324903,
325057..325059,325285..325287,325294..325299,
325330..325332,325336..325341,325348..325350,
325357..325362,325369..325374,325381..325386,
325390..325392,325552..325554,325567..325569,
325573..325575))
/locus_tag="BMA10229_A0293"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(324910..324912,324934..324936,
325069..325071,325081..325083,325255..325257,
325330..325332))
/locus_tag="BMA10229_A0293"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(326937..327827)
/locus_tag="BMA10229_A0294"
/db_xref="GeneID:4792174"
CDS complement(326937..327827)
/locus_tag="BMA10229_A0294"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="iron ABC transporter ATP-binding protein"
/protein_id="YP_001026296.1"
/db_xref="GI:124384300"
/db_xref="GeneID:4792174"
/translation="MNNETVAALAARALSVGYRDHRVLDGLDLTIAVGRVTALCGPNG
CGKSTLLRTLAGLQPALSGTVDVNGAPLGSYRRRALARTLTMLAQFNQIPAGLTVREL
VAYGRYAHGGWLRGLARADRDAIDEALAATGLEPDAARDVAALSGGERQRAWIAMALA
QQAPIVLLDEPTTYLDIHHQLDILRELRRLNRARGLTIVWVLHDLNQAAAYSDEIVLM
RAGRIVAQGTPDAMLEPRHLQAAFGVTMLKTAHPLTGAPMCVPAYEGVLDTDHADPAH
AAAPGGRGAAVARARRDLAA"
misc_feature complement(327045..327809)
/locus_tag="BMA10229_A0294"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:31317"
misc_feature complement(327147..327800)
/locus_tag="BMA10229_A0294"
/note="ABC transporters, involved in the uptake of
siderophores, heme, and vitamin B12, are widely conserved
in bacteria and archaea. Only very few species lack
representatives of the siderophore family transporters.
The E. coli BtuCD protein is an ABC...; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:72973"
misc_feature complement(327684..327707)
/locus_tag="BMA10229_A0294"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(order(327219..327221,327318..327323,
327561..327563,327681..327689,327693..327698))
/locus_tag="BMA10229_A0294"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72973"
misc_feature complement(327561..327572)
/locus_tag="BMA10229_A0294"
/note="Q-loop/lid; other site"
/db_xref="CDD:72973"
misc_feature complement(327366..327395)
/locus_tag="BMA10229_A0294"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72973"
misc_feature complement(327318..327335)
/locus_tag="BMA10229_A0294"
/note="Walker B; other site"
/db_xref="CDD:72973"
misc_feature complement(327300..327311)
/locus_tag="BMA10229_A0294"
/note="D-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(327213..327233)
/locus_tag="BMA10229_A0294"
/note="H-loop/switch region; other site"
/db_xref="CDD:72973"
gene complement(327865..328866)
/locus_tag="BMA10229_A0295"
/db_xref="GeneID:4793707"
CDS complement(327865..328866)
/locus_tag="BMA10229_A0295"
/note="identified by match to protein family HMM PF02668"
/codon_start=1
/transl_table=11
/product="syringomycin biosynthesis enzyme"
/protein_id="YP_001026297.1"
/db_xref="GI:124383392"
/db_xref="GeneID:4793707"
/translation="MPAAAACPTLGDLRVEPGLPTVVSPRDGADIALHEAAPLLREIA
DDVLERAGGVLFTGFRVASIETFQRFAADFGDPLIGYEFASTPRSQVEGAVYTSTEYP
PHRSIPLHNEQSYTREWPLRIWFHCALAARTGGATPIADSRAVYRALDPALVARFAER
ELLYVRNFGQGLDLPWQQAFGTGDPREVERICAARGIGCEWRDGDDGEPLLRTRERCQ
AVARHPRTGELVWFNQANLFHLSALDEDMQEALVDAVGIENVPRNVYYGDGAPLEPDA
LAEIRAVLDGQRIVFPWQTGDVLMLDNMLSAHARDPFEGPRKVVVAMARSYREKRGA"
misc_feature complement(327898..328827)
/locus_tag="BMA10229_A0295"
/note="Taurine catabolism dioxygenase TauD, TfdA family;
Region: TauD; pfam02668"
/db_xref="CDD:202339"
gene complement(328940..329182)
/locus_tag="BMA10229_A0296"
/db_xref="GeneID:4791315"
CDS complement(328940..329182)
/locus_tag="BMA10229_A0296"
/note="identified by match to protein family HMM PF03621"
/codon_start=1
/transl_table=11
/product="mbtH domain-containing protein"
/protein_id="YP_001026298.1"
/db_xref="GI:124386142"
/db_xref="GeneID:4791315"
/translation="MTQAQQPASAPADADDVVYAVVVNDEEQYSIWPTFRAVPAGWRE
AGVRGPKAECLAHIEAVWTDMRPASLRRHLDAARAS"
misc_feature complement(328952..>329113)
/locus_tag="BMA10229_A0296"
/note="MbtH-like protein; Region: MbtH; cl01279"
/db_xref="CDD:242409"
gene complement(329238..329951)
/locus_tag="BMA10229_A0297"
/db_xref="GeneID:4791995"
CDS complement(329238..329951)
/locus_tag="BMA10229_A0297"
/note="RNA polymerase sigma factor involved in the
synthesis of the siderophores pyoverdine in Pseudomonas
and malleobactin in Burkholderia; also involved in the
synthesis of exotoxin and PrpL protease"
/codon_start=1
/transl_table=11
/product="extracytoplasmic-function sigma-70 factor"
/protein_id="YP_001026299.1"
/db_xref="GI:124386337"
/db_xref="GeneID:4791995"
/translation="MAEVLARPAPAKPLPILASNGAFAPAAAPVLRAPSRPAARTPGA
REHGALVDVLVANRPMLVKLARGFVGCASRAEDVVHDVFVKLVDFPNQDAIRQPVAYV
TRMVRNASIDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQL
PARSRAAFEMVRLREETLQSAARALNVSQTLVHFMVRDAERHCVACVDASERGLACPA
FCGARARTVKKCVRDSSIE"
misc_feature complement(329313..329801)
/locus_tag="BMA10229_A0297"
/note="extracytoplasmic-function sigma-70 factor;
Validated; Region: PRK07037"
/db_xref="CDD:180803"
misc_feature complement(329601..329786)
/locus_tag="BMA10229_A0297"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature complement(329343..329495)
/locus_tag="BMA10229_A0297"
/note="Sigma-70, region 4; Region: Sigma70_r4_2;
pfam08281"
/db_xref="CDD:203898"
misc_feature complement(order(329352..329354,329358..329363,
329367..329375,329379..329384,329388..329390,
329418..329423,329439..329441,329469..329471))
/locus_tag="BMA10229_A0297"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 330197..330556
/locus_tag="BMA10229_A0298"
/db_xref="GeneID:4791647"
CDS 330197..330556
/locus_tag="BMA10229_A0298"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026300.1"
/db_xref="GI:124385271"
/db_xref="GeneID:4791647"
/translation="MIARLRTAAGNVPLFEQAGAAPGVPTGSLTHAVRPDLLAAAERA
AAAGAGALPEPSAAHLRAVLVALARDAMPWCSPARRSGRASMRSPHTRSRPCARTRRS
PTHARAPASGSPCRARR"
gene complement(331004..331750)
/locus_tag="BMA10229_A0299"
/db_xref="GeneID:4792770"
CDS complement(331004..331750)
/locus_tag="BMA10229_A0299"
/note="identified by match to protein family HMM PF00106;
match to protein family HMM PF08659"
/codon_start=1
/transl_table=11
/product="short chain dehydrogenase"
/protein_id="YP_001026301.1"
/db_xref="GI:124386122"
/db_xref="GeneID:4792770"
/translation="MSVAFDFHGRSFLVTGASSGIGRAAAVALRGGGARVVAAARNAR
ELERLAHETGCEPLELDVGCDASVRAALSGERMRDAFDGLINCAGVTSLAAAIDTTAD
EFDRVMAVNARGAMLVARHVARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAAL
DAMTRVLCVELGPHGIRVNSVNPTVTLTPMAERAWSDPHASGPMLAAIPLGRFARVAD
VVAPILFLSSDAAAMVSGVALPVDGGYTAR"
misc_feature complement(331007..331750)
/locus_tag="BMA10229_A0299"
/note="short chain dehydrogenase; Provisional; Region:
PRK07060"
/db_xref="CDD:180817"
misc_feature complement(331010..331735)
/locus_tag="BMA10229_A0299"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(order(331193..331204,331280..331282,
331292..331294,331331..331339,331484..331492,
331625..331633,331688..331690,331694..331699,
331703..331705))
/locus_tag="BMA10229_A0299"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(331280..331282,331292..331294,
331331..331333,331418..331420))
/locus_tag="BMA10229_A0299"
/note="active site"
/db_xref="CDD:187535"
gene complement(331747..333288)
/locus_tag="BMA10229_A0300"
/db_xref="GeneID:4791974"
CDS complement(331747..333288)
/locus_tag="BMA10229_A0300"
/note="identified by match to protein family HMM PF00370;
match to protein family HMM PF02782"
/codon_start=1
/transl_table=11
/product="carbohydrate kinase"
/protein_id="YP_001026302.1"
/db_xref="GI:124383345"
/db_xref="GeneID:4791974"
/translation="MACVIGVDIGTQSTKAVLVGLDGAILAQHAVAYRPDTPKPLWAE
QWPHVWFDAVRECIARVSADARAAGIGAESIEALCVSSLYGGSGIPVDREMRPLHPCL
IWMDRRATDEVDWVRAHVDVARLGEITGNGVDSYYGYTKMLWLREKRPDVWANVRYFV
PPNAYVAYRLTGELAVDHSAAGNIGGVYDLGRRDWSDEALDMLGIPATMMPERLVDSD
AVVGGLLREWAHALGLEVGTPVVAGGVDAAVATFAAGATRRGQHVAMIGTSMCWGYLA
ETADARRGLVSMPHVFDGRRDLYVFGGAITAGASVSWFREQFCHAEIEAARAGGGDAH
RLLEAAAAEVSAGSDGVLFLPYLMGERSPVWDAKASGAFVGLSLYHTRAHLYRAVLEG
LAYALRHNIEAGAAGARALDARLVVVGGAAHSDLWMQSIADITGYPVWTIAEEVEAAM
GAALLAALGAARVSREAARRGWVTLAERARPDARHAALHDARFALYAGLYPALQPFMH
GLQTS"
misc_feature complement(331759..333288)
/locus_tag="BMA10229_A0300"
/note="Sugar (pentulose and hexulose) kinases
[Carbohydrate transport and metabolism]; Region: XylB;
COG1070"
/db_xref="CDD:31268"
misc_feature complement(331768..333282)
/locus_tag="BMA10229_A0300"
/note="uncharacterized xylulose kinase-like proteins; a
subgroup of the FGGY family of carbohydrate kinases;
Region: FGGY_XK_like_1; cd07804"
/db_xref="CDD:198372"
misc_feature complement(order(331870..331875,331894..331896,
331909..331914,331918..331950,331957..331959,
331963..331965,332041..332043,332047..332049,
332383..332385,332389..332391,332416..332433,
332440..332448,332470..332472,332500..332502,
332506..332514,332524..332553,332566..332568,
332635..332640,332710..332712,332719..332721,
332725..332727,332737..332739,332743..332745,
332752..332757,332896..332901,332908..332913,
333046..333048,333052..333054,333058..333060,
333217..333222,333232..333234,333238..333240,
333271..333273,333277..333279))
/locus_tag="BMA10229_A0300"
/note="N- and C-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:198372"
misc_feature complement(order(332017..332019,332026..332034,
332278..332280,332284..332289,332353..332358,
332362..332367,332383..332385,332485..332493,
332548..332553,332977..332979,333034..333042,
333244..333246,333250..333261,333265..333267))
/locus_tag="BMA10229_A0300"
/note="putative active site [active]"
/db_xref="CDD:198372"
misc_feature complement(order(332017..332019,332026..332034,
332278..332280,332284..332289,332353..332358,
332362..332367,332485..332493,332551..332553,
333244..333246,333250..333261,333265..333267))
/locus_tag="BMA10229_A0300"
/note="MgATP binding site [chemical binding]; other site"
/db_xref="CDD:198372"
misc_feature complement(order(332551..332553,333256..333258,
333265..333267))
/locus_tag="BMA10229_A0300"
/note="catalytic site [active]"
/db_xref="CDD:198372"
misc_feature complement(order(332551..332553,333265..333267))
/locus_tag="BMA10229_A0300"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198372"
misc_feature complement(order(332383..332385,332548..332553,
332977..332979,333034..333042))
/locus_tag="BMA10229_A0300"
/note="putative xylulose binding site [chemical binding];
other site"
/db_xref="CDD:198372"
misc_feature complement(order(332134..332136,332143..332151,
332161..332184,332338..332343,332350..332352))
/locus_tag="BMA10229_A0300"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:198372"
gene complement(333319..334611)
/locus_tag="BMA10229_A0301"
/db_xref="GeneID:4791268"
CDS complement(333319..334611)
/locus_tag="BMA10229_A0301"
/EC_number="1.1.1.-"
/note="identified by match to protein family HMM PF00107;
match to protein family HMM PF08240"
/codon_start=1
/transl_table=11
/product="zinc-binding dehydrogenase oxidoreductase"
/protein_id="YP_001026303.1"
/db_xref="GI:124385991"
/db_xref="GeneID:4791268"
/translation="MRRACRLDRARRAHRPRRGGEGRCARPPRRRPPRALDPLHSLHP
LHPRAGRRIRPAVFSNPASQTETMTNRNDETQQMTAIVCHAPEDYRVERVAKPRANAR
ELVIRIGACGICASDCKCHAGAKMFWGGPSPWVKAPVIPGHEFFGYVEALGEGAAEHF
GVALGDRVIAEQIVPCGTCRYCKSGQYWMCEVHHIFGFQREVADGGMAEYMRIPSGAI
VHPIPLGISLEDAAIIEPLACAIHTVNRGDIQLDDVVVIAGAGPLGLMMTQVAKLKTP
RRLVVVDPVEARRALARAYGADVTIDPAREDAPAIVRALTGGYGCDVYIETTGVPAGV
TQGMALIRKLGRFVEFSVFGKDTALDWSIIGDRKELDVRGAHLGPYCYPVAIDLLARG
LVTSKGIVTHGFSLDEWDEAIRVANSLDSIKVLMKPRG"
misc_feature complement(333328..334380)
/locus_tag="BMA10229_A0301"
/note="Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only]; Region: Tdh; COG1063"
/db_xref="CDD:31263"
misc_feature complement(333334..334380)
/locus_tag="BMA10229_A0301"
/note="Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR; cl16912"
/db_xref="CDD:211475"
misc_feature complement(order(333481..333489,333559..333564,
333628..333633,333679..333681,333748..333750,
333760..333765,333820..333837,333895..333897,
333907..333909,334255..334257,334264..334272))
/locus_tag="BMA10229_A0301"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:176178"
gene complement(334637..335641)
/gene="rbsC"
/locus_tag="BMA10229_A0302"
/db_xref="GeneID:4792024"
CDS complement(334637..335641)
/gene="rbsC"
/locus_tag="BMA10229_A0302"
/note="identified by match to protein family HMM PF02653"
/codon_start=1
/transl_table=11
/product="carbohydrate ABC transporter permease"
/protein_id="YP_001026304.1"
/db_xref="GI:124385070"
/db_xref="GeneID:4792024"
/translation="MHDRTAAPSASCAPAAASPARATGPALAALRRSTTFYPLVGLVA
VCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTL
AAGLLVAGANGAAALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIY
TGGYPIDGLPDWVRFFGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNE
HATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMG
GTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYIGRERRT
"
misc_feature complement(<335363..335518)
/gene="rbsC"
/locus_tag="BMA10229_A0302"
/note="Transmembrane subunit (TM) of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which are involved in the uptake of
branched-chain amino acids (AAs), as well as TMs of
transporters involved in the uptake of...; Region:
TM_PBP1_branched-chain-AA_like; cl00454"
/db_xref="CDD:200658"
misc_feature complement(334658..335437)
/gene="rbsC"
/locus_tag="BMA10229_A0302"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(334931..334987)
/gene="rbsC"
/locus_tag="BMA10229_A0302"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(335634..337241)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/db_xref="GeneID:4792931"
CDS complement(335634..337241)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="carbohydrate ABC transporter ATP-binding
protein"
/protein_id="YP_001026305.1"
/db_xref="GI:124384499"
/db_xref="GeneID:4792931"
/translation="MVSGPRDEADDMDEASGAARAPDEASEEAMDTILALTGITKRFP
GVVALRGIDLRVARGEIHALLGENGAGKSTLMKILCGIHPPDEGVIALDGEPRRFANH
HDAIAAGVGIVFQEFSLIPELNAVDNLFLGREWRGRLGLRERARMRRAAADIFARLDV
AIDLSAPVRELSVAQQQFVEIGKALSLDARLLILDEPTATLTPAEAAHLFGVMRELKR
RGVAMIFISHHLDEIFEVCDRITVLRDGQYVGTTEVARTDVGALVEMMVGRRIEQSFP
PKPRLARDAAPVLEVDALQVRENGPVNRFALREGEILGFAGLVGSGRTSSALALIGAK
PARVRRMRVRGRPVRLADPAAALAAGIGLLPESRKTQGLIPAFSIRHNIAINNLGKHR
RLRWFVDAAAETRTTLELMQRLGVKAPTPHTRVDTLSGGNQQKVVIARWLNHHTRILI
FDEPTRGIDIGAKAEIYQLMRELSARGYSIVLISSELPEIVGLCDRVAVFRQGRIEAM
LEGEAIEPNTVMTYATSDVRGANHEHA"
misc_feature complement(335664..337160)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature complement(336468..337142)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(337023..337046)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(336558..336560,336654..336659,
336897..336899,337020..337028,337032..337037))
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(336897..336908)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(336702..336731)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(336654..336671)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(336636..336647)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(336552..336572)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature complement(335727..336389)
/gene="rbsA"
/locus_tag="BMA10229_A0303"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene complement(337235..338182)
/gene="rbsB"
/locus_tag="BMA10229_A0304"
/db_xref="GeneID:4793625"
CDS complement(337235..338182)
/gene="rbsB"
/locus_tag="BMA10229_A0304"
/note="identified by match to protein family HMM PF00532"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter periplasmic
ribose-binding protein"
/protein_id="YP_001026306.1"
/db_xref="GI:124383574"
/db_xref="GeneID:4793625"
/translation="MMHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMT
FQELNNPYFVTMQKALDEAAASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNP
TDSTGIQSAVVSAKKAGAVVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGG
EVAILDGIPVVPILERVRGCRAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPL
LKGIFSVNDGGSMGALSAIEASGRDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRD
QIRLAIGIGLAKKWGANVPKAIPVDVKRIDKGNAKTFSW"
misc_feature complement(337265..338065)
/gene="rbsB"
/locus_tag="BMA10229_A0304"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_11; cd06321"
/db_xref="CDD:107316"
misc_feature complement(337337..338062)
/gene="rbsB"
/locus_tag="BMA10229_A0304"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
misc_feature complement(order(337367..337369,337433..337435,
337655..337657,337805..337807,338027..338029))
/gene="rbsB"
/locus_tag="BMA10229_A0304"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107316"
gene complement(338284..339273)
/locus_tag="BMA10229_A0305"
/db_xref="GeneID:4793934"
CDS complement(338284..339273)
/locus_tag="BMA10229_A0305"
/note="identified by match to protein family HMM PF00165"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_001026307.1"
/db_xref="GI:124384102"
/db_xref="GeneID:4793934"
/translation="MQPDLEVVDVRRGESFKAWSHGYPYRTVRWHFHPEFEVHLIVET
TGQMFVGDYVGGFGPGNLVLMGPNLPHNWVSDVSEGRTIAERNLVVQFGQAFVSRCAD
SFTEWRHVEALLADARRGVQFGPRTSEAIKPLFAELIHARGLRRIVLFLSMLQILIDA
TDRELLASPAYEADASSFASTRINHVLAYLGKNLANERRETDLARLAGQSVSAFSHDF
RRHTGLPFVQYVNRMRINLACQLLMDGDASITDICFRSGFNNLSNFNRQFLAVKGMSP
SRFRRYQALNDASREASEAAALRGAGIAGAPAIVPAARARGEARAPAEALLSG"
misc_feature complement(<339028..339210)
/locus_tag="BMA10229_A0305"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:212615"
misc_feature complement(338431..338667)
/locus_tag="BMA10229_A0305"
/note="Helix-turn-helix domain; Region: HTH_18; pfam12833"
/db_xref="CDD:205096"
misc_feature complement(338431..>338532)
/locus_tag="BMA10229_A0305"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 339322..339630
/locus_tag="BMA10229_A0306"
/db_xref="GeneID:4791003"
CDS 339322..339630
/locus_tag="BMA10229_A0306"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026308.1"
/db_xref="GI:124386544"
/db_xref="GeneID:4791003"
/translation="MCRSARGAPSFVLRSANDSRRPSGRPLKIRHRTDIFSNSNECGR
RMRQIGCEAAGPPRATTWPRPEAAGHALARRHRRRRPRTPIATAAKIRPARHGGQCGQ
"
gene 340066..340776
/locus_tag="BMA10229_A0307"
/db_xref="GeneID:4791493"
CDS 340066..340776
/locus_tag="BMA10229_A0307"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026309.1"
/db_xref="GI:124386028"
/db_xref="GeneID:4791493"
/translation="MVPARHCHVAVFDQAIVALDIRRSRYFLYDAACARDFADHYLDF
KPIDAPRALKPLIADRILVAESPAAARSRIADYRGWSFDAFDSGIWGSRVLGKRDAAR
FEWLPFWRIVRSAASLKMRGFHALAALDQLDARGAPARGDDASHTVERLLRASIWSPF
RITCVQMSLALATHLRRQNVPAQLVIGVRPMPFVAHAWVEVDGRVCGDEPDLKKSYGE
IYRTPRCDASAAPFGLAA"
misc_feature 340390..340728
/locus_tag="BMA10229_A0307"
/note="Transglutaminase-like superfamily; Region:
Transglut_core3; pfam13471"
/db_xref="CDD:205649"
gene 340853..342121
/locus_tag="BMA10229_A0308"
/db_xref="GeneID:4792061"
CDS 340853..342121
/locus_tag="BMA10229_A0308"
/note="identified by match to protein family HMM PF00733"
/codon_start=1
/transl_table=11
/product="asparagine synthase"
/protein_id="YP_001026310.1"
/db_xref="GI:124385304"
/db_xref="GeneID:4792061"
/translation="MTLLEAGGRGRAYLREAPASVDRALARARTLADARDAVTRAVWG
AYVAVLDEAATGRRLFLPDPLHSVRLYYRTDEDGRVDVDPQAANLLRDASIDWNLDYL
IEFACTQFGPLGETPFASVRAVPPGCALVVDADGRCAIERAWLPRASAGDDVRASCAA
ALDEVYSRFARSHPNVCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPDCYE
RDLAARVADSIGARLICIDIDRHLPFSERIVPTPPATLSQDMLFLGIDRAVSRAIGAS
SVLLEGQGGDLLFKAVPDANAVLDALRGKGWAFALRTAEKLAVLHNDSIPRVLLMAAK
IALRRRLFGQDAAGTRQTMSKLFASHAPRAAASPTRMCRAGAPLDESVAMLDRFVSIM
TPVTDAAYTNRLNPYLAQPVVEASFGLRSY"
misc_feature <340994..341284
/locus_tag="BMA10229_A0308"
/note="Glutamine amidotransferases class-II (GATase). The
glutaminase domain catalyzes an amide nitrogen transfer
from glutamine to the appropriate substrate. In this
process, glutamine is hydrolyzed to glutamic acid and
ammonia. This domain is related to...; Region: Gn_AT_II;
cl00319"
/db_xref="CDD:213093"
misc_feature 341330..>341719
/locus_tag="BMA10229_A0308"
/note="The C-terminal domain of Asparagine Synthase B.
This domain is always found associated n-terminal
amidotransferase domain. Family members that contain this
domain catalyse the conversion of aspartate to asparagine.
Asparagine synthetase B catalyzes the...; Region:
Asn_Synthase_B_C; cd01991"
/db_xref="CDD:30178"
misc_feature order(341387..341395,341477..341485,341657..341659,
341693..341701)
/locus_tag="BMA10229_A0308"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30178"
misc_feature order(341387..341395,341477..341485,341657..341659,
341693..341701)
/locus_tag="BMA10229_A0308"
/note="Molecular Tunnel; other site"
/db_xref="CDD:30178"
gene complement(342166..342999)
/locus_tag="BMA10229_A0309"
/db_xref="GeneID:4792803"
CDS complement(342166..342999)
/locus_tag="BMA10229_A0309"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS1404 transposase"
/protein_id="YP_001026311.1"
/db_xref="GI:124383406"
/db_xref="GeneID:4792803"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature complement(342226..342942)
/locus_tag="BMA10229_A0309"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature complement(342727..342897)
/locus_tag="BMA10229_A0309"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature complement(342343..342681)
/locus_tag="BMA10229_A0309"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature complement(342232..342432)
/locus_tag="BMA10229_A0309"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(343023..343286)
/locus_tag="BMA10229_A0310"
/db_xref="GeneID:4791329"
CDS complement(343023..343286)
/locus_tag="BMA10229_A0310"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001026312.1"
/db_xref="GI:124386165"
/db_xref="GeneID:4791329"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLAEAMLDMEALKVVVKGKP"
misc_feature complement(343086..343283)
/locus_tag="BMA10229_A0310"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 343389..343694
/locus_tag="BMA10229_A0311"
/db_xref="GeneID:4791837"
CDS 343389..343694
/locus_tag="BMA10229_A0311"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026313.1"
/db_xref="GI:124384791"
/db_xref="GeneID:4791837"
/translation="MLREIAAAHTPVDVLWRRTKGSFGIGFVKGIVSHYDAFRELIRD
GVLMRSGQLDEAELEHALKAVRVGQNAAAISLALVGCVEIFCASWQNFMTNRSAAIC"
gene 343703..343831
/locus_tag="BMA10229_A0312"
/db_xref="GeneID:4793194"
CDS 343703..343831
/locus_tag="BMA10229_A0312"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026314.1"
/db_xref="GI:124385715"
/db_xref="GeneID:4793194"
/translation="MLTNRFAARAPMRARPHPAPPRAGAGLSSCAMPAHRHDREST"
gene 343828..345588
/locus_tag="BMA10229_A0313"
/db_xref="GeneID:4792289"
CDS 343828..345588
/locus_tag="BMA10229_A0313"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter membrane protein"
/protein_id="YP_001026315.1"
/db_xref="GI:124385447"
/db_xref="GeneID:4792289"
/translation="MKLAALRSLADVIRLMLDKETHARRPIVAGVLVEALTSAFMLLG
PIALKLAVDEMARPRFDAAKASVDIALFAVLWSASAISSIALLAYTGRIVHAVSNALL
RRALHAQLPALASRASSDSGYVQGLLERLPYSLQVIIEGVLWKIVPVAIQLAVALVLI
ALLVPLRYAAILFAVLAAYFVFSHLSAEQYEKSAATTNEAAGALSAALGDVLANAPRV
VYNGALAREIDYVGARAGARLDVDWRRSWLLTRAAACQYGIIALGMAAMFVLCVRDIA
AGRITLGDFMLLQTYVLQFALPLGAYGFVLRQAGAALANVREALDIAPRPAPAAAIGA
APPPGRSGAPIAVRRLAFRRADRFAIEPMSFDLPAGSYTAIVGHNGSGKSTLAKIVAG
RLAPDEGVVAYGDVDLYRVASDARHRFALYVPQDVALLNRSLRENVRYYPSTLTDDDA
ARLLERLAFHKDGRPIDLDGEVGEGGARLSGGQVQKVELVRLMGVDVPAIVLDETTSG
LDPHSDALGIAMLRERLGQRTTLVLITHRIANVEAADQVLFLSGGRLVAAGPHRRLVD
TCDEYRAFWRRQPEPADAKA"
misc_feature 343897..345561
/locus_tag="BMA10229_A0313"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature 344914..345525
/locus_tag="BMA10229_A0313"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 344956..344979
/locus_tag="BMA10229_A0313"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(344965..344970,344974..344982,345100..345102,
345334..345339,345433..345435)
/locus_tag="BMA10229_A0313"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 345091..345102
/locus_tag="BMA10229_A0313"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 345262..345291
/locus_tag="BMA10229_A0313"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 345322..345339
/locus_tag="BMA10229_A0313"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 345346..345357
/locus_tag="BMA10229_A0313"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature order(345418..345423,345427..345441)
/locus_tag="BMA10229_A0313"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(345639..346664)
/locus_tag="BMA10229_A0314"
/db_xref="GeneID:4792560"
CDS complement(345639..346664)
/locus_tag="BMA10229_A0314"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026316.1"
/db_xref="GI:124386602"
/db_xref="GeneID:4792560"
/translation="MSALARLLPRRAPGWLAWACAALVVALAQPAWAVRCLTNSGQTS
LTEPIGNVASYPTDAPDGYVIWISAPRTTDGYCYKDLGGAGNLNIVDNIYFYANPDGK
NPAAWGLEIGIRYRGVDHFGAGSRPGTGVPTGFAVPPCSQTDFNAKRCPKIPVSITYQ
VVVRKKGAWVQPPGDVYTVFQFDGEKGLNNTNPSFQYKLSGLQNLKPTPCMVDVTVTP
EPGIVKFGQVQSSGNGFSPAVPRKPFSLALTKKCSIAVRVDGYFETSQAVRDGLLVPQ
SDSNFGIGIEDRNGHAIAFNRQFVLTQMPANVSYQNIVLDAVLKSFGAPKIGPFTGTA
TIRLFIY"
misc_feature complement(345651..346046)
/locus_tag="BMA10229_A0314"
/note="Fimbrial protein; Region: Fimbrial; pfam00419"
/db_xref="CDD:215909"
gene complement(346661..347410)
/locus_tag="BMA10229_A0315"
/db_xref="GeneID:4791386"
CDS complement(346661..347410)
/locus_tag="BMA10229_A0315"
/note="identified by match to protein family HMM PF00345;
match to protein family HMM PF02753"
/codon_start=1
/transl_table=11
/product="fimbrial chaperone"
/protein_id="YP_001026317.1"
/db_xref="GI:124383956"
/db_xref="GeneID:4791386"
/translation="MTDMTHRFPCAARARRAAAALFIALAGAAHAAIVPDRTRVILNE
GEQAAIVTLSNKSDAYPYLVQSWLEDERGNRITTPLMVVPPLQRVEPKERNVLRIARM
PGATLPADRESVFYLNIREVPPKTDTPNALQIALHTQMKLFYRPAGVQPARDEDPTLP
MTLRVDAVARKLVFDNPTPYHVTVVALAAGANRAALPLDPVMVNPKSAASVPFSASAA
GGLFVTHVDDYGGQVTVEYTCDGLACRSVKR"
misc_feature complement(346694..347314)
/locus_tag="BMA10229_A0315"
/note="P pilus assembly protein, chaperone PapD [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: FimC; COG3121"
/db_xref="CDD:32935"
misc_feature complement(346961..347314)
/locus_tag="BMA10229_A0315"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature complement(346709..346897)
/locus_tag="BMA10229_A0315"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene complement(347490..348452)
/locus_tag="BMA10229_A0316"
/db_xref="GeneID:4791037"
CDS complement(347490..348452)
/locus_tag="BMA10229_A0316"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein mdtF"
/protein_id="YP_001026318.1"
/db_xref="GI:124385126"
/db_xref="GeneID:4791037"
/translation="MARFFIDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVS
LYATYPGASAQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLA
AVDVQNRLKIVEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASAN
VLQALRRVEGVGKVQFWGAEYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDV
GRSAVPDSAPIAATVLADAPLTTPDAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQ
PRAKLVVRAGAKTICTPAALPDTLQLDGTPAPVACEAAAQHASR"
misc_feature complement(347577..347738)
/locus_tag="BMA10229_A0316"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:206123"
gene complement(348469..349668)
/locus_tag="BMA10229_A0317"
/db_xref="GeneID:4792988"
CDS complement(348469..349668)
/locus_tag="BMA10229_A0317"
/note="MexX; AmrA; involved in resistance to antibiotics;
periplasmic membrane fusion protein; functions along with
MexY and OprM; part of an inducible system that appears to
respond to interference with the cellular translation
machinery"
/codon_start=1
/transl_table=11
/product="periplasmic multidrug efflux lipoprotein"
/protein_id="YP_001026319.1"
/db_xref="GI:124385123"
/db_xref="GeneID:4792988"
/translation="MKYEWARTRRLSAALAVAAFVAAGCGKHESEHDAAAPREASVVT
VKKTSVPLSVELPGRLDAYRQAEVRAWGAGIVTARTYEEGQEVKRGAVLFRIDPAPFK
AARDAAAGALEKARAAHLAALDKRRRYDELVRDRAVSERDHTEALADERQAKAAVASA
RAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDPIYVNFSQ
PAADVESLRRAVKSGRAAGIAQQDVEVTLVRPDGSTYARKGKLLFADLAVDPSTDTVA
MRALFPNPERELLPGAYVRIALDRAVARDAILVPRDALLRTADSATVKVVGQNGKIRD
VTVEAAQMKGRDWIVTRGLAGGERVVVVDAAQFEAGTTVKALERGAAAQPASGAAAAS
APGRRST"
misc_feature complement(348538..349599)
/locus_tag="BMA10229_A0317"
/note="periplasmic multidrug efflux lipoprotein precursor;
Reviewed; Region: PRK09578"
/db_xref="CDD:169982"
misc_feature complement(<349366..349479)
/locus_tag="BMA10229_A0317"
/note="Biotinyl_lipoyl_domains are present in
biotin-dependent carboxylases/decarboxylases, the
dihydrolipoyl acyltransferase component (E2) of 2-oxo acid
dehydrogenases, and the H-protein of the glycine cleavage
system (GCS). These domains transport CO2, acyl; Region:
Biotinyl_lipoyl_domains; cl11404"
/db_xref="CDD:213122"
misc_feature complement(348796..349146)
/locus_tag="BMA10229_A0317"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 349812..350483
/locus_tag="BMA10229_A0318"
/db_xref="GeneID:4792985"
CDS 349812..350483
/locus_tag="BMA10229_A0318"
/note="identified by match to protein family HMM PF00440;
match to protein family HMM PF08361"
/codon_start=1
/transl_table=11
/product="TetR family regulatory protein"
/protein_id="YP_001026320.1"
/db_xref="GI:124386522"
/db_xref="GeneID:4792985"
/translation="MARKTREESLNTKNRILDAAELVLLEKGVGQTAMADIAEAAGMS
RGAVYGHFNGKIEVCVAVCDRAFSRAVEGFDLSDERPALATLRLAASHYLHQCGEPGS
MQRVLEILYMKCEQSEENAPLMRRRALYELQTLRIAKALLRRAVAAGELDASLDVHLA
GVYLLSLLEGIFGSMIWTTRLRGDRWRDAEAMLDAGVDTLRASPALRVAEACAARGLP
RANVH"
misc_feature 349812..350450
/locus_tag="BMA10229_A0318"
/note="DNA-binding transcriptional repressor AcrR;
Provisional; Region: PRK10668"
/db_xref="CDD:182632"
misc_feature 349857..349997
/locus_tag="BMA10229_A0318"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature 350058..350411
/locus_tag="BMA10229_A0318"
/note="Bacterial transcriptional repressor; Region:
TetR_C_6; cl07106"
/db_xref="CDD:208611"
gene complement(350538..350825)
/locus_tag="BMA10229_A0319"
/db_xref="GeneID:4791471"
CDS complement(350538..350825)
/locus_tag="BMA10229_A0319"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026321.1"
/db_xref="GI:124384114"
/db_xref="GeneID:4791471"
/translation="MAKGVHILEKGGSNGKGGGAAAASEPASGRAGSARALNAAGRDR
QRTAPRRVPLGPTTRTISAPNGDSVFEGSNPNEESMPTKVTAPRAQLFLAI"
gene 350691..352220
/locus_tag="BMA10229_A0321"
/db_xref="GeneID:4790834"
CDS 350691..352220
/locus_tag="BMA10229_A0321"
/note="identified by match to protein family HMM PF01551"
/codon_start=1
/transl_table=11
/product="metallopeptidase"
/protein_id="YP_001026322.1"
/db_xref="GI:124383640"
/db_xref="GeneID:4790834"
/translation="MTVAPRRVERPGTAGPPRRGFRRSRRPPPFSVRTALFKDVDTLG
QANRVPRFRFFRPPRRAGARRRSAGPRRRPSFVHAQAARGERARRADRLRSRRAAGRV
EVARRVERECRARPAARVRRRAVSERAALRHGRARAHARRAEPARRAVAHAKGATLGD
APSDIAQHGPARPAPARPAAPPPGLFAPLAEHRNALLGYDGRAFSLADSVLALVDSGV
RAGPIDDTLADTLNRLDIPPEVRIQIGDLIAERVRAHAHAQRGDRYRIAFDAASGKPR
VTALELRVAGRRFGAIWFKPPGASSGAYYAFDGAPLDAPALAMPVVSTRISSYFGERV
HPLSHILQMHTGVDLAAPTGTRVNAAAAGVVSFVGYDPGGYGKYVVIDHPDRSSTYYA
HLSAFAPKLEVGMAVAQGQRIGAVGSTGAATGPHLHFEVRVDDQPVDPLVALANAQNT
LSAMQLDAFRRAASEARFRLASGATPPLGFAQINAPLWAEFATDTSTLRAIFNTHYAT
S"
misc_feature <351642..352013
/locus_tag="BMA10229_A0321"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:31082"
misc_feature 351717..352010
/locus_tag="BMA10229_A0321"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 350818..351384
/locus_tag="BMA10229_A0320"
/db_xref="GeneID:4794000"
CDS 350818..351384
/locus_tag="BMA10229_A0320"
/codon_start=1
/transl_table=11
/product="peptidase"
/protein_id="YP_001026323.1"
/db_xref="GI:124384659"
/db_xref="GeneID:4794000"
/translation="MAKPIAYPVSVSSARRAEPAPAAEAPARGGAPRSFTRRLPAASA
LGALIACGLAALPAVSKSPDASSANAARAPQRVFADAPFPSAQRFVTGELERMLAEQN
PPAAPLRTPRARRSATRPRTSRSTARRGRRPHAPPRRRRDFSRRSPSTATHCSATTAA
RSRSPIRCSRSSIAACAPGRSTTRSPTR"
gene complement(352262..353005)
/locus_tag="BMA10229_A0322"
/db_xref="GeneID:4793423"
CDS complement(352262..353005)
/locus_tag="BMA10229_A0322"
/note="identified by match to protein family HMM PF00528;
match to protein family HMM TIGR01726"
/codon_start=1
/transl_table=11
/product="glutamine ABC transporter"
/protein_id="YP_001026324.1"
/db_xref="GI:124384742"
/db_xref="GeneID:4793423"
/translation="MDLSILANNLPYLLVGAFPDGSLGGAALSLVLALASALASAGLG
VALGVALALATGALRGALVVVIGFFRAIPVLMLIFWTYFLLPVLLHADVPGLAAVVCA
LLLVGGAYLAHSVHAGIRAAGDGQWQAGLALGLTRWQTVRHVLLPQAVRIMTPSFVNQ
WVSLVKDTSLAYIVGVPELSFVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATR
LLAHRRRRAPRGDDATRASAAQPAAGGPR"
misc_feature complement(352364..>352804)
/locus_tag="BMA10229_A0322"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(352364..352369,352376..352381,
352388..352393,352397..352402,352409..352414,
352442..352447,352487..352492,352499..352510,
352529..352531,352538..352543,352583..352585,
352634..352636,352643..352648,352658..352660,
352664..352669,352670..352672,352676..352678,
352682..352687,352760..352762,352766..352771,
352778..352804))
/locus_tag="BMA10229_A0322"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(352493..352510,352760..352804))
/locus_tag="BMA10229_A0322"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(352412..352414,352442..352444,
352451..352453,352490..352492,352700..352702,
352760..352762))
/locus_tag="BMA10229_A0322"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(352562..352564,352574..352579,
352595..352633))
/locus_tag="BMA10229_A0322"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(353008..353733)
/locus_tag="BMA10229_A0323"
/db_xref="GeneID:4793326"
CDS complement(353008..353733)
/locus_tag="BMA10229_A0323"
/note="identified by match to protein family HMM PF00528;
match to protein family HMM TIGR01726"
/codon_start=1
/transl_table=11
/product="general L-amino acid transport system permease
aapQ"
/protein_id="YP_001026325.1"
/db_xref="GI:124385114"
/db_xref="GeneID:4793326"
/translation="MDAWLAPKYLMWLWQGFLLTLGLSLAAAVTATLAGFALAIARHA
KRASPRRAAAAYVVAFRNTPLVVQLLFWYFGVAALLPEPAMAWLNAPHALDVGGLALR
WPSFEFVAGWLGLSGYTSAFVAEEFQAGLRGVPAGQHHAASALGLSPLQAFRFVVLPQ
AVRIALPPLFGQYMNLIKNSSLTMAIGVAELSYASRQVETETFRTFAAFGVSTVLYVA
AVALVEAAAQWTLRRRDRTFAGR"
misc_feature complement(353149..>353547)
/locus_tag="BMA10229_A0323"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(353179..353184,353191..353202,
353221..353223,353230..353235,353275..353277,
353326..353328,353335..353340,353350..353352,
353356..353361,353368..353370,353374..353376,
353380..353385,353515..353517,353521..353526,
353533..353547))
/locus_tag="BMA10229_A0323"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(353185..353202,353515..353547))
/locus_tag="BMA10229_A0323"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(353182..353184,353437..353439,
353515..353517))
/locus_tag="BMA10229_A0323"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(353254..353256,353266..353271,
353287..353325))
/locus_tag="BMA10229_A0323"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(353735..353938)
/locus_tag="BMA10229_A0324"
/db_xref="GeneID:4792976"
CDS complement(353735..353938)
/locus_tag="BMA10229_A0324"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026326.1"
/db_xref="GI:124386032"
/db_xref="GeneID:4792976"
/translation="MPCGTLARNAARASARAACASHIHAPRARREGAGGTRANDAIRG
AQSRDKQSRDKQSAAARAGGPKQ"
gene complement(353968..354093)
/locus_tag="BMA10229_A0325"
/db_xref="GeneID:4792065"
CDS complement(353968..354093)
/locus_tag="BMA10229_A0325"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026327.1"
/db_xref="GI:124386573"
/db_xref="GeneID:4792065"
/translation="MKLTVVVNPALNVRGDARGVGRAMPRPTGARAASDACITRA"
gene complement(354132..354947)
/locus_tag="BMA10229_A0326"
/db_xref="GeneID:4791523"
CDS complement(354132..354947)
/locus_tag="BMA10229_A0326"
/note="identified by match to protein family HMM PF00497"
/codon_start=1
/transl_table=11
/product="polar amino acid ABC uptake transporter
substrate binding protein"
/protein_id="YP_001026328.1"
/db_xref="GI:124384138"
/db_xref="GeneID:4791523"
/translation="MKFKPFATWLLGLSLVAAHAAAHADRLDDIRKAGVLRVATFDSN
PPFGFVDPRTNRIVGLDVDYAQALADRLGVKLKLQPTNPANRIPFLTSGKVDLVLANF
TITDERAKQVDFSVPYFASGQQFLAKKGVLKSADQLNRLRIGADKGTTNEVTLREKYP
QATIVAYDDTPFAFAALRAGNVQAITQDGPKLIGLLANVPDKQNYEVPAFSISNDYMG
VGAPKGEPRLVAFVNETLTDLEASGRAGRIYDAWFGPNTKTPLARIFKIGDKR"
misc_feature complement(354183..354842)
/locus_tag="BMA10229_A0326"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:215950"
misc_feature complement(354189..354842)
/locus_tag="BMA10229_A0326"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature complement(order(354384..354386,354498..354500,
354624..354626,354699..354701,354816..354818))
/locus_tag="BMA10229_A0326"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature complement(order(354405..354407,354423..354425,
354435..354437))
/locus_tag="BMA10229_A0326"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature complement(354294..354311)
/locus_tag="BMA10229_A0326"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene 355120..355263
/locus_tag="BMA10229_A0328"
/db_xref="GeneID:4790858"
CDS 355120..355263
/locus_tag="BMA10229_A0328"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026329.1"
/db_xref="GI:124385538"
/db_xref="GeneID:4790858"
/translation="MPRHDPARHDAVRRGAKHTRGPRVARMRATAAGADVQYARRGAT
YAP"
gene complement(355227..356258)
/locus_tag="BMA10229_A0327"
/db_xref="GeneID:4792472"
CDS complement(355227..356258)
/locus_tag="BMA10229_A0327"
/note="identified by match to protein family HMM PF07811"
/codon_start=1
/transl_table=11
/product="TadE-like protein"
/protein_id="YP_001026330.1"
/db_xref="GI:124384774"
/db_xref="GeneID:4792472"
/translation="MNERRAAFARRRERGAVVLWFVLFLPVLLLFGAFAIDLPRVAAA
RNELQNAADAAALAGAASLEAGAGAPAWAAAASAAAAALSLNASDGAALSSGDVQTGY
WNVTGVPAGLEPTTLAPGEYDVPAVQATVTRAPNQNGGPLSLLMGGLLGLVGTPAAAT
AVAVAGAPATVGAGGLFPMVIDQCVLDQYWDARAGAPRVDPTTGAPYEFQVGNGRTYG
GTCYAGQWTTFLVNANDVPTVRGLMAHGNPTPLSIGDSIWIEPGVKTALYYDVPVGVT
VVVPVATQISSKTYVPVVAFAAFYVDASDGANLKAITGHFVGGYKIPASASGIGPAYG
AYVAPRLAY"
gene complement(356251..356679)
/locus_tag="BMA10229_A0329"
/db_xref="GeneID:4793358"
CDS complement(356251..356679)
/locus_tag="BMA10229_A0329"
/note="identified by match to protein family HMM PF07811"
/codon_start=1
/transl_table=11
/product="TadE-like protein"
/protein_id="YP_001026331.1"
/db_xref="GI:124385110"
/db_xref="GeneID:4793358"
/translation="MKRLARLVHDERGVVSLEFVLAFPFMMLVLFGIVDTSLLLCDKA
VITNASREAARAGVVVRVPQLAATDITNIALSYAQGSLVSGGTVGAPVVNVDQSAGTS
PGSPLKVTVSYTYQGLVLGSALSALTGPITLTAVTVMNYE"
misc_feature complement(<356536..356670)
/locus_tag="BMA10229_A0329"
/note="Flp pilus assembly protein TadG [Intracellular
trafficking and secretion]; Region: TadG; COG4961"
/db_xref="CDD:227296"
misc_feature complement(356536..356643)
/locus_tag="BMA10229_A0329"
/note="TadE-like protein; Region: TadE; pfam07811"
/db_xref="CDD:203769"
gene complement(356689..357618)
/locus_tag="BMA10229_A0330"
/db_xref="GeneID:4792972"
CDS complement(356689..357618)
/locus_tag="BMA10229_A0330"
/note="identified by match to protein family HMM PF07719;
match to protein family HMM PF07721"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026332.1"
/db_xref="GI:124385537"
/db_xref="GeneID:4792972"
/translation="MPVALLLAGCASHGVFQPRPVLSQRGTVGDGDLSVAESALAAGD
AELAATLFERALKADPRSLPAQVGLGDAMYQTGELARAGVLYAQAAAAAPDDPRAQLG
LARVALRERHLDDALARYAKLNAARPDNIAAAAGLGTVLDLLGRHDDAQRVYRAALAR
HPDAHALKTDLGLSLVLADRAREGANVLLDIAGLPNAPAQAREDLALAYGMLGNDDAA
KRILVHDLPAASAEDNLRFYRNVRARRAARGGSGGRRRTGAGGRGKCDKCGGRADHDD
CGERASRGARGGRPAGALRGARDRRRRPRARAR"
misc_feature complement(356962..357213)
/locus_tag="BMA10229_A0330"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
misc_feature complement(order(356983..356988,356995..357000,
357007..357012,357088..357093,357100..357105,
357109..357114,357199..357204,357211..357213))
/locus_tag="BMA10229_A0330"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(356965..356967,357001..357003,
357046..357048,357055..357057,357067..357069,
357103..357105,357148..357150,357157..357159,
357169..357171,357205..357207))
/locus_tag="BMA10229_A0330"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene complement(357762..358706)
/locus_tag="BMA10229_A0331"
/db_xref="GeneID:4792471"
CDS complement(357762..358706)
/locus_tag="BMA10229_A0331"
/note="identified by match to protein family HMM PF00482"
/codon_start=1
/transl_table=11
/product="type II secretion system protein F"
/protein_id="YP_001026333.1"
/db_xref="GI:124385777"
/db_xref="GeneID:4792471"
/translation="MTPAALSITVLLALVAVAALAWLLTRDVAVRRRVAQRARASAAR
AAAVYAPVDDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSV
MAGLKLVVGACAGLAALALGAHVPRVGDYVVLRVLMMAGAFVIGMMLPEHALGFVLAR
RQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIG
GDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEK
AAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLIAVFHK"
misc_feature complement(357768..>358310)
/locus_tag="BMA10229_A0331"
/note="Flp pilus assembly protein TadC [Cell motility and
secretion / Intracellular trafficking and secretion];
Region: TadC; COG2064"
/db_xref="CDD:224975"
misc_feature complement(357810..358193)
/locus_tag="BMA10229_A0331"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
gene complement(358703..359698)
/locus_tag="BMA10229_A0332"
/db_xref="GeneID:4792352"
CDS complement(358703..359698)
/locus_tag="BMA10229_A0332"
/note="identified by match to protein family HMM PF00482"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026334.1"
/db_xref="GI:124386517"
/db_xref="GeneID:4792352"
/translation="MSAADVVAVGAFFAIVVAGFIVRALRDLARRRPAARVRSRVEAL
REPRAAARPVAPARASRVGLQLFTRTHGEGEGGALRAWLRARGEHVRTAAGGGGVRAI
AFASALAALAGFVGASFAGFAPWLRLALAAALAAGAARAVYRILIGRFKQRFLSVFPD
ALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGADLKDVLEQQAERL
QLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALTAEGRIASKIIA
AVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIANLDTSR"
misc_feature complement(358712..>359254)
/locus_tag="BMA10229_A0332"
/note="Flp pilus assembly protein TadB [Intracellular
trafficking and secretion]; Region: TadB; COG4965"
/db_xref="CDD:34572"
misc_feature complement(358841..359218)
/locus_tag="BMA10229_A0332"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:201255"
gene complement(359695..361257)
/locus_tag="BMA10229_A0333"
/db_xref="GeneID:4791466"
CDS complement(359695..361257)
/locus_tag="BMA10229_A0333"
/note="identified by match to protein family HMM PF00437"
/codon_start=1
/transl_table=11
/product="CpaF"
/protein_id="YP_001026335.1"
/db_xref="GI:124384168"
/db_xref="GeneID:4791466"
/translation="MFGRRPAASFAPGDAGGAREFVPDAVSAGAGAAPAGGHASAPDA
GGAARAREPAGASGASAPGGAPQSGVAPSGHRPASRDDRIDRDDGHDRAPAQDHHEAL
IRSETFKTIRAVVFSSMNMSAALMMSRAEVREGIEQAAADVIARERLTVTLAEQALIV
DEILNDMFGVGPIEPLLADERVTDILVNGPDQVYVERAGKLELTPLKFRDNAHVINVA
QRIAAAVGRRVDESSPMVDARLADGSRVNVVLPPIAIRGASISIRKFAKRNITLARMA
QQGNLSQAMVEVLKIASACRLNIVISGGTGSGKTTLLNALSHFIDSHERIVTIEDAAE
LQLQQPHVVSLETRPENSEGLGGVSQRDLVRNALRMRPDRIILGETRGPEAFDVLQAM
NTGHDGSMTTIHANTPRDAITRLESMVMMANGNLPLVSIRRQIASAVHMILQIERMRD
GVRRVTRVTEIAGMEGDVVITQDLFAFRYDASAFQEQVHGMFESSSLRPAFAQRAAYY
GLEGALLGALQP"
misc_feature complement(359824..360867)
/locus_tag="BMA10229_A0333"
/note="Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion]; Region: CpaF;
COG4962"
/db_xref="CDD:34569"
misc_feature complement(359890..360444)
/locus_tag="BMA10229_A0333"
/note="Type IV secretory pathway component VirB11, and
related ATPases. The homohexamer, VirB11 is one of eleven
Vir proteins, which are required for T-pilus biogenesis
and virulence in the transfer of T-DNA from the Ti
(tumor-inducing) plasmid of bacterial to...; Region:
VirB11-like_ATPase; cd01130"
/db_xref="CDD:29996"
misc_feature complement(order(359908..359910,360325..360342,
360433..360435))
/locus_tag="BMA10229_A0333"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29996"
misc_feature complement(order(360328..360336,360346..360351))
/locus_tag="BMA10229_A0333"
/note="Walker A motif; other site"
/db_xref="CDD:29996"
misc_feature complement(order(359917..359919,360019..360021,
360028..360030,360040..360048,360076..360081,
360088..360090,360100..360102,360139..360141,
360145..360153,360220..360225,360229..360240,
360259..360261,360283..360285,360340..360345))
/locus_tag="BMA10229_A0333"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:29996"
misc_feature complement(360121..360138)
/locus_tag="BMA10229_A0333"
/note="Walker B motif; other site"
/db_xref="CDD:29996"
gene complement(361257..362492)
/locus_tag="BMA10229_A0334"
/db_xref="GeneID:4790888"
CDS complement(361257..362492)
/locus_tag="BMA10229_A0334"
/codon_start=1
/transl_table=11
/product="fimbriae assembly-related protein"
/protein_id="YP_001026336.1"
/db_xref="GI:124385757"
/db_xref="GeneID:4790888"
/translation="MGAFDRVGGARPVKELRDAAGGARLVAIVADAASDEVIRNLIAD
QAMTGAQVARGGIDDAIALMRDLSHGPQHLLVDVSGAAMPLSDLARLADVCDPSVNVI
VIGERNDVGLFRSMLRIGVRDYLVKPLTVELVHRALSAADPNAAARAGKAIGFVGARG
GVGVTSIAVALARHLADRTRRRVAYVDFDCHGGAACSMLGVVSNQGLVELLQNPQRLD
AQLIHQAMVAQSDRLFVLSAELPYDSEAPWRAGAVAGLVGALRHQFHYVLLDLPERAG
RLVDEALAACASVYVVADRSVHAAREAARLLHHAQARDGDAHVSLILNNAQQPVRGRV
EPADFARAVGRASMLELPYEPQTLAVAENLGAALDAPRGDGFAAGIGALAQGLTGADA
APAARRPWYARLAGARGAR"
misc_feature complement(362070..362390)
/locus_tag="BMA10229_A0334"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cl09944"
/db_xref="CDD:209106"
misc_feature complement(order(362109..362114,362121..362123,
362178..362180,362238..362240,362262..362264))
/locus_tag="BMA10229_A0334"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(362262..362264)
/locus_tag="BMA10229_A0334"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(362238..362246,362250..362255))
/locus_tag="BMA10229_A0334"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(362106..362114)
/locus_tag="BMA10229_A0334"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(361602..362042)
/locus_tag="BMA10229_A0334"
/note="AAA domain; Region: AAA_31; pfam13614"
/db_xref="CDD:205792"
misc_feature complement(<361914..362036)
/locus_tag="BMA10229_A0334"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
gene complement(362503..362916)
/locus_tag="BMA10229_A0335"
/db_xref="GeneID:4792332"
CDS complement(362503..362916)
/locus_tag="BMA10229_A0335"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026337.1"
/db_xref="GI:124386034"
/db_xref="GeneID:4792332"
/translation="MAIRPEHTTRRRASRAVAACAALAALAGCMSGHPPYGMPDASTI
GYDARTGLARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLP
YAGADAALGASAVRRYDEGRATPLNPTSTTTSVTH"
misc_feature complement(362623..>362760)
/locus_tag="BMA10229_A0335"
/note="Pilus biogenesis CpaD protein (pilus_cpaD); Region:
Pilus_CpaD; pfam09476"
/db_xref="CDD:220255"
gene complement(362950..364398)
/locus_tag="BMA10229_A0336"
/db_xref="GeneID:4792067"
CDS complement(362950..364398)
/locus_tag="BMA10229_A0336"
/note="identified by match to protein family HMM PF00263"
/codon_start=1
/transl_table=11
/product="type II secretion system protein"
/protein_id="YP_001026338.1"
/db_xref="GI:124383335"
/db_xref="GeneID:4792067"
/translation="MWSVIDAIGKRRQAASASPRARAFAAGRRAAAAALWWLALALGM
AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGK
KAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGR
VPSAADADAVVQTLKPYLRQQEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWS
ALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEG
LITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD
NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSS
DVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP
SSDIEFVLQRSLGIDPLGGDAPRLAGPAGFVY"
misc_feature complement(364018..364224)
/locus_tag="BMA10229_A0336"
/note="Pilus formation protein N terminal region; Region:
T2SS-T3SS_pil_N; pfam13629"
/db_xref="CDD:205806"
misc_feature complement(362953..364221)
/locus_tag="BMA10229_A0336"
/note="Flp pilus assembly protein, secretin CpaC
[Intracellular trafficking and secretion]; Region: CpaC;
COG4964"
/db_xref="CDD:34571"
misc_feature complement(363103..363588)
/locus_tag="BMA10229_A0336"
/note="Bacterial type II and III secretion system protein;
Region: Secretin; pfam00263"
/db_xref="CDD:201120"
gene complement(364433..365485)
/locus_tag="BMA10229_A0337"
/db_xref="GeneID:4791258"
CDS complement(364433..365485)
/locus_tag="BMA10229_A0337"
/note="identified by match to protein family HMM PF08666;
match to protein family HMM TIGR03177"
/codon_start=1
/transl_table=11
/product="Flp pilus assembly CpaB"
/protein_id="YP_001026339.1"
/db_xref="GI:124386572"
/db_xref="GeneID:4791258"
/translation="MSHFLKLAGLMLVAVVGAFLFRALYVAASQPRPAAPPQQVRVRV
AAADLPAGLLLRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK
TDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIE
PGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTR
ARTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPAEPPAPPVWAGDVS
RALRAQAPAEAPAQPRRVGAARAQAERRVIVYRGSKQDDAASAGTPLPGGVPPIPTLP
PLPGAAAPPAGARPAA"
misc_feature complement(364739..365344)
/locus_tag="BMA10229_A0337"
/note="Flp pilus assembly protein CpaB; Region:
pilus_cpaB; TIGR03177"
/db_xref="CDD:188294"
gene complement(365498..365977)
/locus_tag="BMA10229_A0338"
/db_xref="GeneID:4791522"
CDS complement(365498..365977)
/locus_tag="BMA10229_A0338"
/note="identified by match to protein family HMM PF01478"
/codon_start=1
/transl_table=11
/product="fimbriae assembly-related protein"
/protein_id="YP_001026340.1"
/db_xref="GI:124383373"
/db_xref="GeneID:4791522"
/translation="MILPLKLVASWTLASLALADLRTRRLATFAVALVGALYAALALV
GAPGDGGFASHAALGAAAFALGAAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAI
GVGGLAVGAVCIAAGRAPRVLAWFAPARGVPYGVALAAGGLLAVWAPAACRLPGCLG"
gene complement(366042..366233)
/locus_tag="BMA10229_A0339"
/db_xref="GeneID:4791296"
CDS complement(366042..366233)
/locus_tag="BMA10229_A0339"
/note="identified by match to protein family HMM PF04964"
/codon_start=1
/transl_table=11
/product="fimbriae assembly-related protein"
/protein_id="YP_001026341.1"
/db_xref="GI:124384682"
/db_xref="GeneID:4791296"
/translation="MLRFIQSLWRDERGVSALEYSVLAGIVVVAVAAAGAIFGGGSGL
PELFQNMITKVTSVQTNGH"
gene complement(366809..367750)
/locus_tag="BMA10229_A0340"
/db_xref="GeneID:4793446"
CDS complement(366809..367750)
/locus_tag="BMA10229_A0340"
/note="identified by match to protein family HMM PF00528"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="YP_001026342.1"
/db_xref="GI:124385635"
/db_xref="GeneID:4793446"
/translation="MRDEYELALAPAASIDAIAPAAGIAAARAGDPAAGAGECGRAAP
LARLYARLGVRRLRDAQWLRKTALALALIAAWEIVARVVDDDLLLPSFGATALAFAHG
VANGELPAKIAVSLSMLLRGYALGVALAFALTALAATTRLGRDLLTMLTAMFNPLPSI
ALLPLALLWFGLGTGSLLFVLVHAVLWPLALSTFAGFQAVPATLRMVGRNYGLTGVRH
VVAILVPAALPSILAGLKVAWAFAWRTLIAAELVFGASAGGGGLGWYIFQNRNELYTD
RVFAGLAAVIAIGLVVEHGVFDALERVSVKRWGAHTL"
misc_feature complement(366821..367525)
/locus_tag="BMA10229_A0340"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(366845..>367246)
/locus_tag="BMA10229_A0340"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:211439"
gene complement(367777..368607)
/locus_tag="BMA10229_A0341"
/db_xref="GeneID:4792389"
CDS complement(367777..368607)
/locus_tag="BMA10229_A0341"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="nitrate/sulfonate/bicarbonate ABC transporter
ATPase"
/protein_id="YP_001026343.1"
/db_xref="GI:124384814"
/db_xref="GeneID:4792389"
/translation="MAAEPSTLFSNPADAHACATSGKLVRVDRVTLEYRHRERVVRAT
QQVSFDVYGADRFVLLGPSGCGKSTLLKAIAGFVAPVEGAITLAGEPVRGPGADRIVV
FQEFDQLAPWKTVRENVAFALRAARRLSRRDAAERSRAALDKVGLAAFADAYPHTLSG
GMKQRVAIARALAMEPRVLLMDEPFAALDALTRRRMQHELLRLWDDARFTLLFVTHSI
EEALVIGNRVLLLSPHPGRVRAELNSHHFDERSVGRADFQRTAERIQRLLFDESGARA
"
misc_feature complement(367786..368538)
/locus_tag="BMA10229_A0341"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature complement(367882..368535)
/locus_tag="BMA10229_A0341"
/note="ATP-binding cassette domain of the nitrate and
sulfonate transporters; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:213260"
misc_feature complement(368404..368427)
/locus_tag="BMA10229_A0341"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213260"
misc_feature complement(order(367960..367962,368059..368064,
368296..368298,368401..368409,368413..368418))
/locus_tag="BMA10229_A0341"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213260"
misc_feature complement(368296..368307)
/locus_tag="BMA10229_A0341"
/note="Q-loop/lid; other site"
/db_xref="CDD:213260"
misc_feature complement(368107..368136)
/locus_tag="BMA10229_A0341"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213260"
misc_feature complement(368059..368076)
/locus_tag="BMA10229_A0341"
/note="Walker B; other site"
/db_xref="CDD:213260"
misc_feature complement(368041..368052)
/locus_tag="BMA10229_A0341"
/note="D-loop; other site"
/db_xref="CDD:213260"
misc_feature complement(367954..367974)
/locus_tag="BMA10229_A0341"
/note="H-loop/switch region; other site"
/db_xref="CDD:213260"
gene complement(368702..369025)
/locus_tag="BMA10229_A0342"
/db_xref="GeneID:4793217"
CDS complement(368702..369025)
/locus_tag="BMA10229_A0342"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026344.1"
/db_xref="GI:124385138"
/db_xref="GeneID:4793217"
/translation="MHGMHGIHGIHGIHGIHGIHGIHGIHGIHGIHGIHGIHGIHGMR
WTRGRRGSSARHDMATRAAAPAVDAATRRDDDVAPMRRQCGAHDIDIENASLCRAATH
LNLDP"
gene complement(369077..370123)
/locus_tag="BMA10229_A0343"
/db_xref="GeneID:4793000"
CDS complement(369077..370123)
/locus_tag="BMA10229_A0343"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_001026345.1"
/db_xref="GI:124385943"
/db_xref="GeneID:4793000"
/translation="MTRASSLGRRSLSLTAALAVLVAALAAASLVAAPAARAEGRIRV
AEQFGIVYLLLNVARDRHLIEQAGRAEGIAIDVDWVKLSGGAAINDALLSGSIDIAGA
GVGPLLTIWDRTRGRQNVKGVASLGNLPYYLVSNDPRVKTIADFTARERIAVPAVTVS
VQSRLLQFAAAQRWGDRAYDRLDKLTQAVAHPDAAAAIIAGRTELTAHFGNPPFQEQE
LAANPNAHIVLSSYDVLGGPSSATVLYATERFRRDNPKTYRAFVAALGQAARYVQTNP
EGAVDAYLRVNGSKADRALLLKIVRNPQVQFRIAPQNTFALAAFMHRVGAIRHEPKTW
RDYFFDDPATAQGS"
misc_feature complement(369293..370009)
/locus_tag="BMA10229_A0343"
/note="NMT1-like family; Region: NMT1_2; pfam13379"
/db_xref="CDD:205558"
misc_feature complement(369110..369955)
/locus_tag="BMA10229_A0343"
/note="ABC transporter, substrate-binding protein,
aliphatic sulfonates family; Region: SsuA_fam; TIGR01728"
/db_xref="CDD:130789"
gene complement(370376..371680)
/locus_tag="BMA10229_A0344"
/db_xref="GeneID:4792158"
CDS complement(370376..371680)
/locus_tag="BMA10229_A0344"
/note="identified by match to protein family HMM PF00083;
match to protein family HMM PF07690; match to protein
family HMM TIGR00883"
/codon_start=1
/transl_table=11
/product="alpha-ketoglutarate permease"
/protein_id="YP_001026346.1"
/db_xref="GI:124383549"
/db_xref="GeneID:4792158"
/translation="MNDQTAVAAAARQDVRRRVLAIVGASSGNLVEWFDFYIYSFCAL
YFAPAFFPSGNTTTQLLNTAGVFAAGFLMRPIGGWLFGRIADKHGRRAAMMISVLMMC
GGSLVIAVLPTYAQIGALAPLLLLVARLFQGLSVGGEYGTSATYMSEVALQGRRGFFA
SFQYVTLIGGQLCALLVLVILQQTLSSDALKAWGWRIPFVVGAAAALISLYLRKSLDE
TSTSESRKAKDAGTIRGVWQHKGAFLTVVGFTAGGSLIFYTFTTYMQKYLVNTAGMHA
KTASNVMTAALFVYMLMQPVFGALSDKIGRRMSMILFGTGAVIGTVPLMHALGGVTSP
LVAFGLIVVALAIVSFYTSISGLIKAEMFPPEVRAMGVGLSYAVANAIFGGSAEYVAL
WFKSVGSESSFYWYVTVLCAISLLVSWRMRDPSREGYLRNEP"
misc_feature complement(370415..371617)
/locus_tag="BMA10229_A0344"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(370418..371617)
/locus_tag="BMA10229_A0344"
/note="alpha-ketoglutarate transporter; Provisional;
Region: PRK10406"
/db_xref="CDD:182433"
misc_feature complement(order(370529..370531,370538..370543,
370553..370558,370565..370570,370601..370603,
370610..370615,370625..370627,370634..370639,
370646..370648,370799..370801,370811..370813,
370820..370822,370832..370834,370844..370846,
370886..370888,370895..370900,370907..370912,
370919..370921,371168..371170,371186..371191,
371198..371203,371237..371239,371246..371251,
371258..371263,371270..371275,371435..371440,
371444..371449,371459..371461,371468..371473,
371480..371482,371549..371554,371558..371566,
371573..371575))
/locus_tag="BMA10229_A0344"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(372150..373832)
/locus_tag="BMA10229_A0345"
/db_xref="GeneID:4793909"
CDS complement(372150..373832)
/locus_tag="BMA10229_A0345"
/note="identified by match to protein family HMM PF04293"
/codon_start=1
/transl_table=11
/product="SpoVR family protein"
/protein_id="YP_001026347.1"
/db_xref="GI:124386587"
/db_xref="GeneID:4793909"
/translation="MTTRHLHNEARGYEPRRRSDEASGAAAHERDASPEAAAQHPEAP
ASGLKEARMNVADRKPLPCPSDWTFELIEEYDTHISQVAEQYELDIYPIQLELISAEQ
MMDAYASVGMPVNYRHWSFGKHFLSTEKSYRRGQMGLAYEIVINSNPCIAYLMEENTM
TMQALVIAHAAYGHNSFFKGNYLFRLWTDAHAIIDYLVYAKNYVAECEERYGLDRVEE
LLDSCHALMNYGVDRYKRPQKPSLAKESELRREREAYLQSQVNELWRTLPAKKPEFAD
EEQEERYPPEPQENLLYFAEKNAPFLEPWEREVIRIVRKIGQYFYPQRQTQVMNEGWA
TFWHYTLLNTMYNQGKLADGFMMEFLHSHSNVIYQPPVTKPYYSGINPYALGFSMMSD
IRRICEAPTEEDHKWFPELAGSPWLPALHYAMRNFKDESFIAQYLSPHLIREMRLFSV
LDDDMRDALEVSAIHDDSGYQYVRQALSRQYDIHHREPNIQVWSVNTRGDRSLTLRHF
MTDNRHLSNDSEEVLKHMARLWQFDVYLESVDETGTVRKRYECRYTAPEIRL"
misc_feature complement(372177..373667)
/locus_tag="BMA10229_A0345"
/note="SpoVR family protein; Provisional; Region:
PRK11767"
/db_xref="CDD:236973"
misc_feature complement(372177..373640)
/locus_tag="BMA10229_A0345"
/note="Uncharacterized conserved protein [Function
unknown]; Region: SpoVR; COG2719"
/db_xref="CDD:225340"
gene complement(373832..375097)
/locus_tag="BMA10229_A0346"
/db_xref="GeneID:4791537"
CDS complement(373832..375097)
/locus_tag="BMA10229_A0346"
/note="identified by match to protein family HMM PF04285"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026348.1"
/db_xref="GI:124383743"
/db_xref="GeneID:4791537"
/translation="MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSI
KDIQSTQSITIPRKDIAEPTFRHGPGGKRELVHPGNADYVRGDKIPRPPGGAGGGGSQ
ASNEGEGQDDFVFELSREEFMQYFFDDLELPRLVKTHLLTVPSWKNVRAGWAAEGTPN
NIDVVRSLRSALGRRIALGSPFVNELRELEEKLVALKDEPGDHRVEIAQLEDAIHHLK
GRIWRIPFIDPFDLRYVNRVKMPQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYL
FLKRNYERIEVVFIRHHTRAEEVDEDTFFHSTESGGTVVSSALELMRKVMEERYSPTE
WNIYGAQASDGDNWTDDSPKCRKILDEDILTKVRYFAYIQVTPEEQNLWLEYAQLALS
QPHLAMKKVESAADIYPVFRELFEKHVET"
misc_feature complement(373847..375094)
/locus_tag="BMA10229_A0346"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2718"
/db_xref="CDD:32611"
misc_feature complement(373835..375055)
/locus_tag="BMA10229_A0346"
/note="hypothetical protein; Provisional; Region:
PRK05325"
/db_xref="CDD:180016"
misc_feature complement(order(374066..374068,374147..374149,
374336..374338))
/locus_tag="BMA10229_A0346"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29222"
gene complement(375221..377143)
/locus_tag="BMA10229_A0347"
/db_xref="GeneID:4790713"
CDS complement(375221..377143)
/locus_tag="BMA10229_A0347"
/note="identified by match to protein family HMM PF06798;
match to protein family HMM PF08298"
/codon_start=1
/transl_table=11
/product="serine protein kinase"
/protein_id="YP_001026349.1"
/db_xref="GI:124384703"
/db_xref="GeneID:4790713"
/translation="MDIYSSFANRFEKTREEEFSLEEYLALCKNDPSAYAAAGERMLE
AIGEPEQIDTRNDPRLSRIFANKVIKVYPAFREFYGMEEVIEQVVAYFRHAAQGLEEK
KQILYLLGPVGGGKSSIAERLKQLMERVPFYALKGSPVNESPLGLFDYDEDGPILEEQ
YGIPRRYLKSILSPWAVKRLHEYNGDIRRFRVVRRYPSILRQIGIAKTEPGDENNQDI
SSLVGKVDIRKLEQYAQDDADAYSYSGGLCLANQGLLEFVEMFKAPIKVLHPLLTATQ
EGNFKGTEGFGAIPFDGIILAHSNESEWKAFRNNRNNEALLDRIFVVKVPYCLRVSEE
IKIYEKLIRNSSLAEAVCAPGTLKMMAQLSVLTRLHEPENSSLFSKMQVYDGENLKDT
DPKAKSYQEYRDYAGVDEGMTGVSTRFAFKILSRVFNFDSTEVAANPVHLMYVLEQQI
EREQFPPETEQKYLSFVKDLLASRYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADF
WIQDQEFRDHDTGESFDRAALNAELEKIEKPAGISNPKDFRNEIVNFVLRARAANGGK
NPAWVSYEKLRVVIEKKMFSNTEELLPVISFNAKGSAEEQRKHEDFVNRMVAKGYTPK
QVRLLCDWYLRVRKSS"
misc_feature complement(375224..377143)
/locus_tag="BMA10229_A0347"
/note="PrkA family serine protein kinase; Provisional;
Region: PRK15455"
/db_xref="CDD:185352"
misc_feature complement(<376769..376915)
/locus_tag="BMA10229_A0347"
/note="AAA ATPase domain; Region: AAA_16; pfam13191"
/db_xref="CDD:221970"
misc_feature complement(375248..376012)
/locus_tag="BMA10229_A0347"
/note="PrkA serine protein kinase C-terminal domain;
Region: PrkA; pfam06798"
/db_xref="CDD:219180"
gene complement(377348..378181)
/locus_tag="BMA10229_A0348"
/db_xref="GeneID:4793287"
CDS complement(377348..378181)
/locus_tag="BMA10229_A0348"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfB"
/protein_id="YP_001026350.1"
/db_xref="GI:124385208"
/db_xref="GeneID:4793287"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature complement(377408..378124)
/locus_tag="BMA10229_A0348"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature complement(377909..378079)
/locus_tag="BMA10229_A0348"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature complement(377525..377863)
/locus_tag="BMA10229_A0348"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature complement(377414..377614)
/locus_tag="BMA10229_A0348"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(378205..378468)
/locus_tag="BMA10229_A0349"
/db_xref="GeneID:4792888"
CDS complement(378205..378468)
/locus_tag="BMA10229_A0349"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfA"
/protein_id="YP_001026351.1"
/db_xref="GI:124386164"
/db_xref="GeneID:4792888"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLTEAMLDMEALKVVVKGKP"
misc_feature complement(378262..378465)
/locus_tag="BMA10229_A0349"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene complement(378905..379831)
/locus_tag="BMA10229_A0350"
/db_xref="GeneID:4791836"
CDS complement(378905..379831)
/locus_tag="BMA10229_A0350"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="transcriptional regulator CysB-like protein"
/protein_id="YP_001026352.1"
/db_xref="GI:124383463"
/db_xref="GeneID:4791836"
/translation="MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDEL
GVDIFIRRGKRLTGLTEPGKAVHQLIERMLLDAENLRRVARQFADQDSGHLVVATTHT
QARYALPKVIRQFTEVYPKVHLALRQGSPQQIAQMILNGEADLGISTEALDRFPDIVT
FPCYSWHHVVVVPKGHPLVGRENVTLDDIAEYPIITYDQDFTGRSHIDQAFANAGAVP
DVVLTAIDADVIKTYVELGMGIGVVAAMAYDAQRDTGLVALDTQHLFEASTTRVGLRR
GAFLRAYAYRLIEMFAPHLSEGEIAGQLREAA"
misc_feature complement(378908..379831)
/locus_tag="BMA10229_A0350"
/note="transcriptional regulator CysB-like protein;
Reviewed; Region: PRK12683"
/db_xref="CDD:237172"
misc_feature complement(379640..379825)
/locus_tag="BMA10229_A0350"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(378959..379552)
/locus_tag="BMA10229_A0350"
/note="The C-terminal substrate domain of LysR-type
transcriptional regulators CysB-like contains type 2
periplasmic binding fold; Region: PBP2_CysB_like; cd08413"
/db_xref="CDD:176105"
misc_feature complement(order(379226..379228,379334..379336,
379382..379390,379523..379528,379532..379534))
/locus_tag="BMA10229_A0350"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176105"
misc_feature complement(order(378977..378982,378986..378997,
379124..379126,379133..379138,379145..379150,
379154..379171,379433..379435,379445..379465,
379484..379486,379496..379498,379505..379510,
379517..379522,379529..379531))
/locus_tag="BMA10229_A0350"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176105"
gene complement(379901..380956)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/db_xref="GeneID:4793823"
CDS complement(379901..380956)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/EC_number="3.6.3.25"
/note="identified by match to protein family HMM PF00005;
match to protein family HMM PF08402; match to protein
family HMM TIGR00968"
/codon_start=1
/transl_table=11
/product="sulfate/thiosulfate ABC transporter ATP-binding
protein"
/protein_id="YP_001026353.1"
/db_xref="GI:124386312"
/db_xref="GeneID:4793823"
/translation="MGITVRNLHKRFGEFAALDDVSLDFPAGELVALLGPSGCGKTTL
LRVIAGLEHADSGQVVLQGLDVASVGARERQVGFVFQHYALFRHMTVFENVAFGLRVK
PRRERPSEAAIRAKVHELLSLVQLDWLAQRYPSELSGGQRQRIALARALAVEPKVLLL
DEPFGALDAKVRKELRGWLRRLHDDLHISTIFVTHDQEEALEVADRIVVLNHGRVEQV
GSPQAVYDHPRSAFVYEFLGAANRLDGTVSGNGFVAHGAAQAIAVDADFAGPARAYVR
PHDLELAAPHARAQGIAADVRRVVPLGGSVRVELAARSGEVLEAELDRNAWRALALDV
GDALTAVPRAVRVFPAR"
misc_feature complement(379907..380956)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="ABC-type sulfate/molybdate transport systems,
ATPase component [Inorganic ion transport and metabolism];
Region: CysA; COG1118"
/db_xref="CDD:31315"
misc_feature complement(380240..380956)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="ATP-binding cassette domain of the sulfate
transporter; Region: ABC_CysA_sulfate_importer; cd03296"
/db_xref="CDD:213263"
misc_feature complement(380831..380854)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213263"
misc_feature complement(order(380372..380374,380471..380476,
380714..380716,380828..380836,380840..380845))
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213263"
misc_feature complement(380714..380725)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="Q-loop/lid; other site"
/db_xref="CDD:213263"
misc_feature complement(380519..380548)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213263"
misc_feature complement(380471..380488)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="Walker B; other site"
/db_xref="CDD:213263"
misc_feature complement(380453..380464)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="D-loop; other site"
/db_xref="CDD:213263"
misc_feature complement(380366..380386)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="H-loop/switch region; other site"
/db_xref="CDD:213263"
misc_feature complement(379928..380092)
/gene="cysA"
/locus_tag="BMA10229_A0351"
/note="TOBE-like domain; Region: TOBE_3; pfam12857"
/db_xref="CDD:205111"
gene complement(380970..382016)
/gene="cysW"
/locus_tag="BMA10229_A0352"
/db_xref="GeneID:4791803"
CDS complement(380970..382016)
/gene="cysW"
/locus_tag="BMA10229_A0352"
/note="identified by match to protein family HMM PF00528;
match to protein family HMM TIGR00969; match to protein
family HMM TIGR02140"
/codon_start=1
/transl_table=11
/product="sulfate/thiosulfate ABC transporter permease
CysW"
/protein_id="YP_001026354.1"
/db_xref="GI:124383741"
/db_xref="GeneID:4791803"
/translation="MSRDTARSRAGAARADAGPEFGARFGLESGLESGLESGDDARRA
ARAPARARRLDPVSEPRAVRWLLTGAALAFLALFLVVPLAAVFFEALRKGVDFYLESL
ADPDAWSAIKLTLVVAAIAVPLNLVFGVCASWAIAKFEFKGKAVLTTLIDLPFSVSPV
ISGLVYVLLFGAQGWLGPWLQAHDVQIIFAVPGIVLAAIFVTFPFVARELIPLMQAQG
ADEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGQ
TDTMPLHVEILYNEYNFAAAFAVASVLALLALVTLALKLFAERRLSAELAHGRDDASA
PAAHPGAAVTSSIS"
misc_feature complement(381141..381686)
/gene="cysW"
/locus_tag="BMA10229_A0352"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(381141..381143,381171..381176,
381213..381218,381225..381236,381255..381257,
381264..381269,381309..381311,381360..381362,
381369..381374,381384..381386,381390..381395,
381402..381404,381408..381410,381417..381422,
381516..381518,381522..381527,381534..381563,
381567..381578,381606..381608,381621..381626,
381633..381638))
/gene="cysW"
/locus_tag="BMA10229_A0352"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(381219..381236,381516..381560))
/gene="cysW"
/locus_tag="BMA10229_A0352"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(381141..381143,381171..381173,
381180..381182,381216..381218,381435..381437,
381516..381518))
/gene="cysW"
/locus_tag="BMA10229_A0352"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(381288..381290,381300..381305,
381321..381359))
/gene="cysW"
/locus_tag="BMA10229_A0352"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(382013..382906)
/gene="cysT"
/locus_tag="BMA10229_A0353"
/db_xref="GeneID:4790710"
CDS complement(382013..382906)
/gene="cysT"
/locus_tag="BMA10229_A0353"
/note="identified by match to protein family HMM PF00528;
match to protein family HMM TIGR00969; match to protein
family HMM TIGR02139"
/codon_start=1
/transl_table=11
/product="sulfate/thiosulfate ABC transporter permease
CysT"
/protein_id="YP_001026355.1"
/db_xref="GI:124386272"
/db_xref="GeneID:4790710"
/translation="MTTFTFRKPSALPGFGVTLGITLAYLSLVVLIPLAATFLKTATL
TWDQFVAATTSPRVLASYRLTFSAALGGALVNAVFGFLVAWVLVRYTFPLKRLVDAIV
DLPFALPTSVAGISLAAVYAQNGWIGRYLAPLGIKVAFTPFGVLVALTFIGLPFVVRT
VQPVLEDFEREQEEAAACLGASRWLTFRRVVLPAVTPALLTGFALAFARALGEYGSVI
FIAGNVPMKSEITSLLIITKLEQYDYAGATALAVVMLVVSFVMLLLINTLQWYLQRRT
SRGASGPTPAAHAATALGGAQ"
misc_feature complement(382082..382888)
/gene="cysT"
/locus_tag="BMA10229_A0353"
/note="ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones]; Region: CysU; COG0555"
/db_xref="CDD:223629"
misc_feature complement(382163..382723)
/gene="cysT"
/locus_tag="BMA10229_A0353"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(382163..382168,382175..382180,
382208..382213,382250..382255,382262..382273,
382292..382294,382301..382306,382346..382348,
382397..382399,382406..382411,382421..382423,
382427..382432,382439..382441,382445..382447,
382451..382456,382553..382555,382559..382564,
382571..382600,382604..382615,382643..382645,
382658..382663,382670..382675))
/gene="cysT"
/locus_tag="BMA10229_A0353"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(382256..382273,382553..382597))
/gene="cysT"
/locus_tag="BMA10229_A0353"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(382178..382180,382208..382210,
382217..382219,382253..382255,382469..382471,
382553..382555))
/gene="cysT"
/locus_tag="BMA10229_A0353"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(382325..382327,382337..382342,
382358..382396))
/gene="cysT"
/locus_tag="BMA10229_A0353"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(383039..384076)
/gene="sbp"
/locus_tag="BMA10229_A0354"
/db_xref="GeneID:4791763"
CDS complement(383039..384076)
/gene="sbp"
/locus_tag="BMA10229_A0354"
/note="identified by match to protein family HMM PF01547;
match to protein family HMM TIGR00971"
/codon_start=1
/transl_table=11
/product="sulfate/thiosulfate ABC transporter
sulfate-binding protein"
/protein_id="YP_001026356.1"
/db_xref="GI:124383970"
/db_xref="GeneID:4791763"
/translation="MVKRNTGLAGGARRLIASLALGAAAALGALTPALADTTFLNVSY
DPTRELYQDVNQAFGKEWKARTGETVNFKQSHGGSGAQARSVLDGLQADVVTLALAYD
IDALANKGLVSKDWQKRLPDNASPYTSTIVFLVRKGNPKGIKDWDDLVKPGVSIVTPN
PKTSGGARWNYLAAWAYAQHQPGGTAQTAKDFVTKLYRNAGVLDSDARGATTSFVQRG
IGDVLIAWENEAFLSIKEFGADKFEIVVPSASILAEPPVAVVDKVVDKKGTRKLADAY
LNFLYSRQGQEIAARNYYRPRSRDVPAALTKQFPKLKLYTVDDTFGGWTQAQKTHFAD
GGVFDSIYKPQ"
misc_feature complement(383045..383971)
/gene="sbp"
/locus_tag="BMA10229_A0354"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature complement(383192..383935)
/gene="sbp"
/locus_tag="BMA10229_A0354"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_11; pfam13531"
/db_xref="CDD:205709"
gene complement(384240..384356)
/locus_tag="BMA10229_A0355"
/db_xref="GeneID:4791051"
CDS complement(384240..384356)
/locus_tag="BMA10229_A0355"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026357.1"
/db_xref="GI:124384291"
/db_xref="GeneID:4791051"
/translation="MICIFIQYRGKFKRYLKFGAIAAIPPRFGCVEATLRTR"
gene 384379..385026
/gene="lexA"
/locus_tag="BMA10229_A0356"
/db_xref="GeneID:4793697"
CDS 384379..385026
/gene="lexA"
/locus_tag="BMA10229_A0356"
/EC_number="3.4.21.88"
/note="Represses a number of genes involved in the
response to DNA damage"
/codon_start=1
/transl_table=11
/product="LexA repressor"
/protein_id="YP_001026358.1"
/db_xref="GI:124385072"
/db_xref="GeneID:4793697"
/translation="MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSPNAAE
EHLRALARKGVIELAAGASRGIRLLGIDDAPHQLTLPHAALMQLSLPLVGRVAAGSPI
LAQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIV
ARLGDDVTVKRLKRRPGGVELIAENPDYENIFVKAGSAEFALEGIAVGLIRPGEF"
misc_feature 384385..385017
/gene="lexA"
/locus_tag="BMA10229_A0356"
/note="LexA repressor; Validated; Region: PRK00215"
/db_xref="CDD:234688"
misc_feature 384385..384573
/gene="lexA"
/locus_tag="BMA10229_A0356"
/note="LexA DNA binding domain; Region: LexA_DNA_bind;
pfam01726"
/db_xref="CDD:201938"
misc_feature 384751..384975
/gene="lexA"
/locus_tag="BMA10229_A0356"
/note="Peptidase S24 LexA-like proteins are involved in
the SOS response leading to the repair of single-stranded
DNA within the bacterial cell. This family includes: the
lambda repressor CI/C2 family and related bacterial
prophage repressor proteins; LexA (EC...; Region:
S24_LexA-like; cd06529"
/db_xref="CDD:119397"
misc_feature order(384775..384777,384886..384888)
/gene="lexA"
/locus_tag="BMA10229_A0356"
/note="Catalytic site [active]"
/db_xref="CDD:119397"
gene 385089..385415
/locus_tag="BMA10229_A0357"
/db_xref="GeneID:4792933"
CDS 385089..385415
/locus_tag="BMA10229_A0357"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026359.1"
/db_xref="GI:124386202"
/db_xref="GeneID:4792933"
/translation="MERLARLLPFRQFGRLRHLRGRTPCAPLVAAHSRDHADTQPSLL
PSALPAFARVSLNGSLHHAEPARRAPVRVYHGPSRFIMVGTVDAICRMIDRCIAEERS
LTQQGL"
gene 385449..386183
/locus_tag="BMA10229_A0358"
/db_xref="GeneID:4791874"
CDS 385449..386183
/locus_tag="BMA10229_A0358"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026360.1"
/db_xref="GI:124383622"
/db_xref="GeneID:4791874"
/translation="MNSIARPRGRFLKPVAIGIALIVVAAVALYAYASPYLALRQMKQ
AIDARDAQAISVHVDFPALRISLKQQLTDELMRRIDAQKRDNPLAILGAMIGSALVDP
LVDAYATPDGVAALMSGLPPHARPGQRPPELNPPSDPASAAAAGTGAPPSNAGVPGSA
SGAAKQTASAAAASTSGASGTSGTPPGAPSATPGPSPQTSAGYRGFDEFVVTYRSDDG
SARYAAVFRRSGIFGWKLSAIDLHDD"
misc_feature 385566..385799
/locus_tag="BMA10229_A0358"
/note="Protein of unknown function (DUF2939); Region:
DUF2939; pfam11159"
/db_xref="CDD:204600"
gene complement(386601..387092)
/locus_tag="BMA10229_A0359"
/db_xref="GeneID:4793982"
CDS complement(386601..387092)
/locus_tag="BMA10229_A0359"
/note="identified by match to protein family HMM PF00582"
/codon_start=1
/transl_table=11
/product="universal stress protein"
/protein_id="YP_001026361.1"
/db_xref="GI:124383852"
/db_xref="GeneID:4793982"
/translation="MASYKKILLCYDGTLEGRKALRCGADLALELKAETHLLSVVDMR
SSIAQSAGLLTDVACSRFEETAREILQEGVNWLTERGVHAQGHFAFGYPIDEIANLAT
KLNVDLVVVGHRCRSGLSRWWMGAGNTQLLDRVSCSILVACASPAEQKAESAKEGAAT
IGH"
misc_feature complement(386667..387077)
/locus_tag="BMA10229_A0359"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature complement(order(386709..386720,386748..386753,
386757..386762,386973..386975,387057..387065))
/locus_tag="BMA10229_A0359"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene 387181..388236
/gene="nodI"
/locus_tag="BMA10229_A0360"
/db_xref="GeneID:4791114"
CDS 387181..388236
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="involved in the export of lipooligosaccharides
during nodulation"
/codon_start=1
/transl_table=11
/product="nodulation ABC transporter NodI"
/protein_id="YP_001026362.1"
/db_xref="GI:124384562"
/db_xref="GeneID:4791114"
/translation="MHRERAMIHHRKQRHQRRDEASALKRCGRCTRMARSCRTIPIES
HLPMSVAPIDFQQVEKRYDDKLVVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGIT
HPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAA
RALVPPLLEFAKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA
RHLMWERLRSLLARGKTILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRMLIEAEIG
CDVIEIYGPDPVQLRDELAPFAERTEISGETLFCYVDNPEPIHARLKGRAGLRYLHRP
ANLEDVFLRLTGREMLD"
misc_feature 387316..388233
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="nodulation ABC transporter NodI; Provisional;
Region: PRK13537"
/db_xref="CDD:184124"
misc_feature 387337..387990
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="The ABCA subfamily mediates the transport of a
variety of lipid compounds. Mutations of members of ABCA
subfamily are associated with human genetic diseases, such
as, familial high-density lipoprotein (HDL) deficiency,
neonatal surfactant deficiency; Region: ABC_subfamily_A;
cd03263"
/db_xref="CDD:73022"
misc_feature 387433..387456
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73022"
misc_feature order(387442..387447,387451..387459,387574..387576,
387802..387807,387901..387903)
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73022"
misc_feature 387565..387576
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="Q-loop/lid; other site"
/db_xref="CDD:73022"
misc_feature 387730..387759
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73022"
misc_feature 387790..387807
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="Walker B; other site"
/db_xref="CDD:73022"
misc_feature 387814..387825
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="D-loop; other site"
/db_xref="CDD:73022"
misc_feature 387889..387909
/gene="nodI"
/locus_tag="BMA10229_A0360"
/note="H-loop/switch region; other site"
/db_xref="CDD:73022"
gene 388241..389077
/gene="nodJ"
/locus_tag="BMA10229_A0361"
/db_xref="GeneID:4793506"
CDS 388241..389077
/gene="nodJ"
/locus_tag="BMA10229_A0361"
/note="identified by match to protein family HMM PF01061;
match to protein family HMM TIGR01291"
/codon_start=1
/transl_table=11
/product="ABC transporter permease NodJ"
/protein_id="YP_001026363.1"
/db_xref="GI:124385855"
/db_xref="GeneID:4793506"
/translation="MDTRHYTPSPTLAARRRESAFALALPANATNWIAVWRRNYLVWQ
KLAIASMFGNLADPMIYLFGLGLGLGLMVGHVEGVSYIAFLAAGTVGSSVMISASFES
MYSGFSRMHVQRTWEAIMHTPLSLGDIVLGEIVWAASKAMLSGAAIMLVAGVLGYAKF
PSMLVALPVIALAGIAFASLAMIVTALAPSYDFFMFYQTLALTPMLLLSGVFFPLAQL
PEFAQHIAHALPLSNAVDLIRPAMLDRPATDVARHVAILAAYALGGFFVCARLFRRRM
MR"
misc_feature 388316..389071
/gene="nodJ"
/locus_tag="BMA10229_A0361"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl17235"
/db_xref="CDD:247789"
misc_feature <388466..389065
/gene="nodJ"
/locus_tag="BMA10229_A0361"
/note="ABC-type multidrug transport system, permease
component [Defense mechanisms]; Region: COG0842"
/db_xref="CDD:223912"
gene complement(389156..389578)
/locus_tag="BMA10229_A0362"
/db_xref="GeneID:4792250"
CDS complement(389156..389578)
/locus_tag="BMA10229_A0362"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026364.1"
/db_xref="GI:124385156"
/db_xref="GeneID:4792250"
/translation="MTQHKVHPRLEQALTRGDLAIRQVNSTRATAVLNALGKMIVEAS
ATIGVEASIDIAQGERVYDPVNGVWPQKMLVSFDGPVEDADPEELRTVYLLADDPGTM
FRVEWHRADGKLGRQEGGPLATVAFLTDVEMPWSDDDE"
gene complement(389893..390954)
/locus_tag="BMA10229_A0363"
/db_xref="GeneID:4792836"
CDS complement(389893..390954)
/locus_tag="BMA10229_A0363"
/note="identified by match to protein family HMM PF03773"
/codon_start=1
/transl_table=11
/product="transporter"
/protein_id="YP_001026365.1"
/db_xref="GI:124383866"
/db_xref="GeneID:4792836"
/translation="MSSSRSYTPHPALGLATFVVLAVAGLFYVKWFPYYHKAFAAAEH
HSIGQSILMGAAAHAPQPSLQAALDYAWAYGKAIWQAMVLGLLLGSAVQALLPAHWVA
RALGGTGFGSVAAGGLLALPGMMCTCCAAPVVAGLRERDASPGGALAFWLSNTVLNPA
ALVFMGFVLGWHWSALRLVLGVAMVFGVGYLVNRLAGAQPRVVDDALRAKLVAEQAAV
GNAFVRWMKIFARMTVRLVPEYLVLVLLLGAARAWLFPHIGPDIGNGVGWIVAFAIAG
MLFVIPTAGEVPIIQAMLSLGMGVGPAGALLMTLPPVSVPSLAMLARSFKPATLALVA
ALVVAFGVVGGLAAVALGF"
misc_feature complement(389974..390765)
/locus_tag="BMA10229_A0363"
/note="Predicted permease; Region: DUF318; pfam03773"
/db_xref="CDD:112580"
gene complement(391310..392362)
/locus_tag="BMA10229_A0364"
/db_xref="GeneID:4791128"
CDS complement(391310..392362)
/locus_tag="BMA10229_A0364"
/note="identified by match to protein family HMM PF00248"
/codon_start=1
/transl_table=11
/product="aldo/keto reductase"
/protein_id="YP_001026366.1"
/db_xref="GI:124386451"
/db_xref="GeneID:4791128"
/translation="MEYRTLGDSGVKVSLIGLGTMTWGEQNTESDAHAQLDYAIDQGV
TLIDTAEMYPVPPKAQTQGRTETYLGTWLAKHPALREKLTIATKIAGPARQPHNPTHI
RGAGNQFDRKNLTEALDGSLARLRTDYVDLYQLHWPDRSTTTFGRPAYPWIDDPYTVP
IEETLAVLGDFVKAGKVRHVGVSNETPWGVAQFLRAAEKLGLPRIVSIQNPYSLLNRT
FENGLSEFSHRERIGLLAYSPLAFGSLSGKYEGGARPEGARITRFERFQRYSKPHAVQ
ATSRYVALAKRHGLSPAQLALAFVNSRPFVTSNLIGATSLAQLRENVASVDVKLAPEI
LAEIDALHEQQPNPAP"
misc_feature complement(391340..392356)
/locus_tag="BMA10229_A0364"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature complement(391334..392317)
/locus_tag="BMA10229_A0364"
/note="Aldo/keto reductase family; Region: Aldo_ket_red;
pfam00248"
/db_xref="CDD:215817"
misc_feature complement(order(391397..391402,391409..391411,
391424..391435,391484..391486,391637..391654,
391736..391738,391811..391816,391952..391957,
392099..392101,392204..392206,392219..392221,
392300..392308))
/locus_tag="BMA10229_A0364"
/note="active site"
/db_xref="CDD:119408"
misc_feature complement(order(391955..391957,392099..392101,
392204..392206,392219..392221))
/locus_tag="BMA10229_A0364"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(392638..393075)
/locus_tag="BMA10229_A0365"
/db_xref="GeneID:4791580"
CDS complement(392638..393075)
/locus_tag="BMA10229_A0365"
/note="identified by match to protein family HMM PF03061;
match to protein family HMM TIGR00369"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026367.1"
/db_xref="GI:124386158"
/db_xref="GeneID:4791580"
/translation="MNPLSMSGLELLRAAAAGDLPAASIAETIPMRPESVELGYVKMI
ARADGRHLNPLGGVHGGFAATVLDSVTGCAVHTMLDPGVGYGTVDLHVKMLRPVPRDV
DLVAEGRVIHLSRNLGVAEGTLKTPDDKVVAHASATCFIQRPA"
misc_feature complement(392653..392994)
/locus_tag="BMA10229_A0365"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:239527"
misc_feature complement(order(392785..392796,392815..392817,
392902..392904))
/locus_tag="BMA10229_A0365"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:239527"
misc_feature complement(order(392794..392796,392800..392814,
392884..392886,392893..392895,392899..392901))
/locus_tag="BMA10229_A0365"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:239527"
misc_feature complement(order(392815..392817,392857..392862,
392869..392874,392896..392898))
/locus_tag="BMA10229_A0365"
/note="PHB binding site; other site"
/db_xref="CDD:239527"
gene 393257..393733
/locus_tag="BMA10229_A0366"
/db_xref="GeneID:4791830"
CDS 393257..393733
/locus_tag="BMA10229_A0366"
/note="identified by match to protein family HMM PF01638"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_001026368.1"
/db_xref="GI:124385417"
/db_xref="GeneID:4791830"
/translation="MKWDDVGSMPCSVARTLAVLGDRWTMLILRNAFLGHRRFEAFQT
QLGLTRHVLAERLARLVDEGIFTKRAYQDRPPRFEYRLSQKGLDLYPVLLALAAWGDR
WKDDGNGPPVVLRHRRCAHVMHPVMVCSECGEPIDPREVEPMPGPGWTKQQADKVD"
misc_feature 393257..393613
/locus_tag="BMA10229_A0366"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1733"
/db_xref="CDD:224647"
misc_feature 393311..393571
/locus_tag="BMA10229_A0366"
/note="HxlR-like helix-turn-helix; Region: HxlR;
pfam01638"
/db_xref="CDD:201897"
gene 393955..394179
/locus_tag="BMA10229_A0367"
/db_xref="GeneID:4792723"
CDS 393955..394179
/locus_tag="BMA10229_A0367"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026369.1"
/db_xref="GI:124384263"
/db_xref="GeneID:4792723"
/translation="MPAKALARIRRIALAEPYMRSRQRLMQPDAFGIRMAATSTAPDA
RRVRHIGCAANSSHERQGGRAAASALLPPA"
gene complement(394282..394677)
/locus_tag="BMA10229_A0368"
/db_xref="GeneID:4790803"
CDS complement(394282..394677)
/locus_tag="BMA10229_A0368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026370.1"
/db_xref="GI:124383677"
/db_xref="GeneID:4790803"
/translation="MPHGRRRARLARHRGRPRGTPGFGGLRARSATGGLAEAASMGDV
RSFSSAVEACAFGRVSSSCARRGMRCARGLVDSRIASASASNGDARDARAFGRANPFA
RRNLTSREPRRSVAHDLRDREGARWTIAG"
gene 394916..396223
/locus_tag="BMA10229_A0369"
/db_xref="GeneID:4790645"
CDS 394916..396223
/locus_tag="BMA10229_A0369"
/note="identified by match to protein family HMM PF00375"
/codon_start=1
/transl_table=11
/product="sodium:dicarboxylate symporter family protein"
/protein_id="YP_001026371.1"
/db_xref="GI:124384803"
/db_xref="GeneID:4790645"
/translation="MKKRRNITSYIVIAMILGIAVGYGCHSAFPDPAIAKEIAGYVSL
LSDVFLRLIKMIIAPLVFATLTVGIAHMGDTGAVGRVGVKALGWFFIASFTSLLLGLL
AATLLQPGSHLSLPLPATDAAVNLKTSAFTLKDFVIHLVPKSIAEAMANNEILQIVVF
SIFFGTALSALGDAGKRLTGVIEDLAQVMLKVTGAVMWFAPVAVFAALASTITTEGLG
ILLTFAKFMGSFYIALALLWGVLTLAGLVFLGKRTFTLIRLIREPFLLSFATASSEAA
YPKLLDALDRFGVNRKISSFVLPIGYSFNLDGSMMYCTFAVLFIAQVYGVHLPLGTQI
TMLLLLMLTSKGMAGVPRASLVVIAATLNQFHLPEAGLLLIMGVDMFLDMGRSATNAV
GNSIAAAVVAKWEGQLDAPRDDADSDSDGGDASRGSPRITQRV"
misc_feature 394916..396136
/locus_tag="BMA10229_A0369"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
misc_feature 394946..396127
/locus_tag="BMA10229_A0369"
/note="Sodium:dicarboxylate symporter family; Region: SDF;
pfam00375"
/db_xref="CDD:201189"
gene complement(396464..396598)
/locus_tag="BMA10229_A0370"
/db_xref="GeneID:4793206"
CDS complement(396464..396598)
/locus_tag="BMA10229_A0370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026372.1"
/db_xref="GI:124384063"
/db_xref="GeneID:4793206"
/translation="MPRTLPTGRAPSVFTSMRRARSVRRRGVHDSGSRCRRGNAAAAD
"
gene 396812..397831
/gene="dusA"
/locus_tag="BMA10229_A0371"
/db_xref="GeneID:4790964"
CDS 396812..397831
/gene="dusA"
/locus_tag="BMA10229_A0371"
/EC_number="1.-.-.-"
/note="identified by match to protein family HMM PF01207;
match to protein family HMM TIGR00742"
/codon_start=1
/transl_table=11
/product="tRNA-dihydrouridine synthase A"
/protein_id="YP_001026373.1"
/db_xref="GI:124383650"
/db_xref="GeneID:4790964"
/translation="MSASPALSPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVT
TGALIHGDVARHLAFTPDEAPVALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSE
RVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVA
AAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDE
VEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGASAPAPTREEVEAKLVEYCAAELAR
GTYLGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRGDLSIFDEARTHLPRPEEFFEK
KALQS"
misc_feature 396812..397807
/gene="dusA"
/locus_tag="BMA10229_A0371"
/note="tRNA-dihydrouridine synthase A; Provisional;
Region: PRK11815"
/db_xref="CDD:183323"
misc_feature 396842..397561
/gene="dusA"
/locus_tag="BMA10229_A0371"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:73368"
misc_feature order(396854..396862,396935..396937,397016..397018,
397097..397099,397223..397225,397319..397321,
397439..397441,397445..397447,397505..397510)
/gene="dusA"
/locus_tag="BMA10229_A0371"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73368"
misc_feature order(397016..397018,397106..397111,397223..397225,
397229..397231,397316..397321,397325..397330,
397442..397447,397508..397510)
/gene="dusA"
/locus_tag="BMA10229_A0371"
/note="active site"
/db_xref="CDD:73368"
misc_feature order(397106..397108,397229..397231,397319..397321,
397325..397327)
/gene="dusA"
/locus_tag="BMA10229_A0371"
/note="catalytic residues [active]"
/db_xref="CDD:73368"
misc_feature order(397109..397111,397223..397225,397316..397318,
397328..397330,397442..397447)
/gene="dusA"
/locus_tag="BMA10229_A0371"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73368"
gene 397904..397979
/locus_tag="BMA10229_A0372"
/db_xref="GeneID:4794010"
tRNA 397904..397979
/locus_tag="BMA10229_A0372"
/product="tRNA-His"
/db_xref="GeneID:4794010"
gene 398558..399325
/locus_tag="BMA10229_A0373"
/note="ISBma1, transposase, interruption-N; identified by
match to protein family HMM PF01610"
/pseudo
/db_xref="GeneID:4791361"
gene complement(399370..400203)
/locus_tag="BMA10229_A0374"
/db_xref="GeneID:4792125"
CDS complement(399370..400203)
/locus_tag="BMA10229_A0374"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS1404 transposase"
/protein_id="YP_001026374.1"
/db_xref="GI:124384597"
/db_xref="GeneID:4792125"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature complement(399430..400146)
/locus_tag="BMA10229_A0374"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature complement(399931..400101)
/locus_tag="BMA10229_A0374"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature complement(399547..399885)
/locus_tag="BMA10229_A0374"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature complement(399436..399636)
/locus_tag="BMA10229_A0374"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(400227..400490)
/locus_tag="BMA10229_A0375"
/db_xref="GeneID:4793541"
CDS complement(400227..400490)
/locus_tag="BMA10229_A0375"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001026375.1"
/db_xref="GI:124384450"
/db_xref="GeneID:4793541"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLTEAMLDMEALKVVVKGKP"
misc_feature complement(400284..400487)
/locus_tag="BMA10229_A0375"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 400621..401016
/locus_tag="BMA10229_A0376"
/db_xref="GeneID:4793576"
CDS 400621..401016
/locus_tag="BMA10229_A0376"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001026376.1"
/db_xref="GI:124386473"
/db_xref="GeneID:4793576"
/translation="MLLRNRHNLKPEQAVHLKELLAANQSLLCVYVLRDELKRLWFYR
KPACAEKAWGQWFEQAQQSGIAALQKFAQRLQGYWHGIVARCRHPLNTSVVEGINNTI
KVIKRRAYGYRDEQYFFLKIRAAFPGIPR"
misc_feature <400621..400986
/locus_tag="BMA10229_A0376"
/note="Transposase; Region: DDE_Tnp_ISL3; pfam01610"
/db_xref="CDD:201887"
misc_feature <400624..400998
/locus_tag="BMA10229_A0376"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3464"
/db_xref="CDD:33267"
gene complement(401344..401598)
/locus_tag="BMA10229_A0377"
/db_xref="GeneID:4791603"
CDS complement(401344..401598)
/locus_tag="BMA10229_A0377"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026377.1"
/db_xref="GI:124385639"
/db_xref="GeneID:4791603"
/translation="MEPKGRDISDFGEPYKGYDIEVKTEQVWAGEKAHYRVLQGGAVM
IDWRLVHIDGLLLSERRVIEQTLAVARSAVDRELLGAGVV"
gene complement(401672..401869)
/locus_tag="BMA10229_A0378"
/db_xref="GeneID:4792393"
CDS complement(401672..401869)
/locus_tag="BMA10229_A0378"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026378.1"
/db_xref="GI:124386577"
/db_xref="GeneID:4792393"
/translation="MFPTLSPEAIEALKWIDQFGSGRPLPVGFRLALEELLNDGFVYQ
SGPDRVDITDDGKAYLSEAYD"
gene complement(401999..402214)
/locus_tag="BMA10229_A0379"
/db_xref="GeneID:4791527"
CDS complement(401999..402214)
/locus_tag="BMA10229_A0379"
/note="identified by match to protein family HMM PF03459;
match to protein family HMM TIGR00638"
/codon_start=1
/transl_table=11
/product="molybdenum-pterin-binding protein"
/protein_id="YP_001026379.1"
/db_xref="GI:124385643"
/db_xref="GeneID:4791527"
/translation="MSITAINVRNQFRGKVKEIIRGPVVSEVDVDTPFGIVTSVITTR
SVDELELKVGAEVVALVKSTEVSIARL"
misc_feature complement(402002..402202)
/locus_tag="BMA10229_A0379"
/note="Molybdopterin-binding protein [Coenzyme
metabolism]; Region: MopI; COG3585"
/db_xref="CDD:226113"
gene complement(402303..403310)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/db_xref="GeneID:4792397"
CDS complement(402303..403310)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="aliphatic sulfonate ABC transporter ATP-binding
protein"
/protein_id="YP_001026380.1"
/db_xref="GI:124384232"
/db_xref="GeneID:4792397"
/translation="MTGTTLAATYGPISGADLEAELAQPRIADGDAQDAAVYERDGGA
RALPFASGGAPPDGDRADVRRAAGAGDASVRLTRVSKRYGERAVLADVDLSIGRGSFV
SIVGRSGCGKSTLLRLVAELETPSAGTLVKRGDGGGALDTRIMYQEARLLPWKTVLQN
VMLGLGRRAKDDARAVLDEVGLLARANDWPAQLSGGQRQRVALARALVHRPQLLLLDE
PLGALDALTRIEMHALIERLWREHRFTALLVTHDVQEAVALADRVLLIEAGRIAFDQR
VPLDRPRARASAAFAALEDRVLQRVLTGSDAAPAAPNAAGPEGASRGRAAPASGLRWA
V"
misc_feature complement(402405..403091)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:224041"
misc_feature complement(402474..403091)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="ATP-binding cassette domain of the nitrate and
sulfonate transporters; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:213260"
misc_feature complement(402972..402995)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213260"
misc_feature complement(order(402558..402560,402657..402662,
402870..402872,402969..402977,402981..402986))
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213260"
misc_feature complement(402870..402881)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="Q-loop/lid; other site"
/db_xref="CDD:213260"
misc_feature complement(402705..402734)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213260"
misc_feature complement(402657..402674)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="Walker B; other site"
/db_xref="CDD:213260"
misc_feature complement(402639..402650)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="D-loop; other site"
/db_xref="CDD:213260"
misc_feature complement(402552..402572)
/gene="ssuB"
/locus_tag="BMA10229_A0380"
/note="H-loop/switch region; other site"
/db_xref="CDD:213260"
gene complement(403307..404128)
/gene="ssuC"
/locus_tag="BMA10229_A0381"
/db_xref="GeneID:4790772"
CDS complement(403307..404128)
/gene="ssuC"
/locus_tag="BMA10229_A0381"
/note="identified by match to protein family HMM PF00528"
/codon_start=1
/transl_table=11
/product="aliphatic sulfonate ABC transporter permease"
/protein_id="YP_001026381.1"
/db_xref="GI:124384031"
/db_xref="GeneID:4790772"
/translation="MTTTHSRAHFAARRAAGRAARAVAPWLVPLVLVLAWEFAARAGA
LSSRVLPEPLAVVRAAWALVESGDMWANVKVSTWRALVGFAIGGGVGLALGLATGLSK
AAEVALDSTIQMIRNIPALAMIPLVILWFGIDEKAKLFLVALGVFFPVYINTYHGIRS
VDAGLVEMARSYGVRGFALYRDVILPGALPSILVGVRFALGLMWVMLIVAETISAQSG
IGYMTMNAREFLQTDVVVVGILLYAVLGKLADVLAKWLERATLRWLPAHQPGAHA"
misc_feature complement(403325..404020)
/gene="ssuC"
/locus_tag="BMA10229_A0381"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(403385..403810)
/gene="ssuC"
/locus_tag="BMA10229_A0381"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(403385..403390,403397..403402,
403409..403414,403418..403423,403430..403435,
403463..403468,403493..403498,403505..403516,
403535..403537,403544..403549,403589..403591,
403640..403642,403649..403654,403664..403666,
403670..403675,403682..403684,403688..403690,
403694..403699,403745..403747,403751..403756,
403763..403792,403796..403807))
/gene="ssuC"
/locus_tag="BMA10229_A0381"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(403499..403516,403745..403789))
/gene="ssuC"
/locus_tag="BMA10229_A0381"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(403433..403435,403463..403465,
403472..403474,403496..403498,403745..403747))
/gene="ssuC"
/locus_tag="BMA10229_A0381"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(403568..403570,403580..403585,
403601..403639))
/gene="ssuC"
/locus_tag="BMA10229_A0381"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(404146..405303)
/gene="ssuD"
/locus_tag="BMA10229_A0382"
/db_xref="GeneID:4790931"
CDS complement(404146..405303)
/gene="ssuD"
/locus_tag="BMA10229_A0382"
/EC_number="1.14.14.5"
/note="catalyzes the release of sulfite from
alkanesulfonates"
/codon_start=1
/transl_table=11
/product="alkanesulfonate monooxygenase"
/protein_id="YP_001026382.1"
/db_xref="GI:124385852"
/db_xref="GeneID:4790931"
/translation="MNVFWFIPTHGDSRYLGTAEGARAADYDYFRQVAVAADTLGYDG
VLLPTGRSCEDAWVVASSLIPATKRLKFLVAIRPGLSSPGLSARMASTFDRLSDGRLL
INVVTGGDSAELEGDGLFADHDTRYAITDDFLHIWRGLLAESHENGGIDFDGEHLSAK
GGKLLYPPVQRPHPPLWFGGSSPAAHAIAADHIDTYLSWGEPPAAVEKKIADIRARAA
ARGREIKFGIRLHVIVRETQEEAWRDADRLISRLDDDTIARAQQAFAKMDSEGQRRMA
ALHGGKRGSRQELEIYPNLWAGVGLVRGGAGTALVGNPEQIAARMREYAALGIETFIL
SGYPHLEESYRFAELVFPLVKGGGNTRRAGPLSGPFGEVVGNQYLPKASQS"
misc_feature complement(404149..405303)
/gene="ssuD"
/locus_tag="BMA10229_A0382"
/note="alkanesulfonate monooxygenase; Provisional; Region:
PRK00719"
/db_xref="CDD:234821"
misc_feature complement(404563..405303)
/gene="ssuD"
/locus_tag="BMA10229_A0382"
/note="Alkanesulfonate monoxygenase is the monoxygenase of
a two-component system that catalyzes the conversion of
alkanesulfonates to the corresponding aldehyde and
sulfite. Alkanesulfonate monoxygenase (SsuD) has an
absolute requirement for reduced flavin...; Region:
Alkanesulfonate_monoxygenase; cd01094"
/db_xref="CDD:238527"
misc_feature complement(order(404611..404613,404617..404619,
404713..404715,404755..404760,404926..404928,
404986..404988,405145..405147,405274..405276,
405286..405288))
/gene="ssuD"
/locus_tag="BMA10229_A0382"
/note="active site"
/db_xref="CDD:238527"
misc_feature complement(order(404806..404811,404815..404826,
404830..404832,404956..404961,404968..404970,
405019..405021,405028..405030,405037..405042,
405049..405054,405058..405060,405109..405111,
405118..405123,405130..405132,405139..405156))
/gene="ssuD"
/locus_tag="BMA10229_A0382"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238527"
misc_feature complement(405076..405081)
/gene="ssuD"
/locus_tag="BMA10229_A0382"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:238527"
misc_feature complement(order(404563..404580,404599..404610,
404791..404832,404929..404937,404956..404982))
/gene="ssuD"
/locus_tag="BMA10229_A0382"
/note="insertion regions; other site"
/db_xref="CDD:238527"
gene complement(405330..405473)
/locus_tag="BMA10229_A0383"
/db_xref="GeneID:4792247"
CDS complement(405330..405473)
/locus_tag="BMA10229_A0383"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026383.1"
/db_xref="GI:124386647"
/db_xref="GeneID:4792247"
/translation="MPPPRAARGGACAFPRFPRHAFHPAHRRAARASWRIVARPRIAV
AHF"
gene 405657..405980
/locus_tag="BMA10229_A0385"
/db_xref="GeneID:4791431"
CDS 405657..405980
/locus_tag="BMA10229_A0385"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026384.1"
/db_xref="GI:124384741"
/db_xref="GeneID:4791431"
/translation="MALSMQKVILPFLSGFLAALFFREATLALLHTAGLIDATGFSTT
PFAPLGIPEFVANAIMSACWAILMAWLLRVSPERAAPWVPSLVFGGIVLTAARVFAID
PLRGI"
gene complement(405977..406222)
/locus_tag="BMA10229_A0384"
/db_xref="GeneID:4793325"
CDS complement(405977..406222)
/locus_tag="BMA10229_A0384"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026385.1"
/db_xref="GI:124384009"
/db_xref="GeneID:4793325"
/translation="MAARIGDATRRALAASRDGRPPLLGLTSGARRAHDAHRARYASS
LPPSSDMNARMNTSAPQPQTAFATKPTTSGGSMLPAG"
gene 406221..406448
/locus_tag="BMA10229_A0386"
/db_xref="GeneID:4791091"
CDS 406221..406448
/locus_tag="BMA10229_A0386"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026386.1"
/db_xref="GI:124386310"
/db_xref="GeneID:4791091"
/translation="MRPSMSIGAHAGESTLARHAGKSFFRRSLLQRIDRNRSLEAIAP
TPCSPPLISVSRRSNGAIPPSVRRAAPIRTD"
gene complement(406560..407735)
/locus_tag="BMA10229_A0387"
/db_xref="GeneID:4791801"
CDS complement(406560..407735)
/locus_tag="BMA10229_A0387"
/EC_number="4.2.1.17"
/note="catalyzes the formation of
3-hydroxy-2-methylpropanoate from
3-hydroxy-2-methylpropanoyl-CoA"
/codon_start=1
/transl_table=11
/product="3-hydroxyisobutyryl-CoA hydrolase"
/protein_id="YP_001026387.1"
/db_xref="GI:124383728"
/db_xref="GeneID:4791801"
/translation="MTGRARPLSIVMNAFHSDSPSADVRAHVANRIGFLELNRPQALN
ALSTDMIRALHRALDAWRDDADVLAVVIHSPHPRAFCAGGDVRFFHDAHRRGDQASID
TFFIEEYALNHAIFTYPKPYIALMHGVVMGGGMGISQAARRTGGLRVVTDSTKMAMPE
TRIGLFPDVGMSWFLARTPGALGRYLAVTGATLDAASALYAGLADAYLPDAALPALLD
ALRTERLDDGAAVTARVAAEAARHAPTPAPDGSALACARASIDRHFAQPDVAAIAASL
DAERDDAVRAAWADKARDAMRGGALSPLSMAVSLEVVERARGATMADCLRRDLDLTRS
TFARGDVIEGVRAVIVDKDHAPKWRYPAIADVTAQAVAAMFESPWRAHEHPLRKLRD"
misc_feature complement(406605..407678)
/locus_tag="BMA10229_A0387"
/note="3-hydroxyisobutyryl-CoA hydrolase; Provisional;
Region: PRK05617"
/db_xref="CDD:180165"
misc_feature complement(407166..407666)
/locus_tag="BMA10229_A0387"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature complement(order(407247..407249,407256..407261,
407337..407345,407349..407351,407478..407492,
407502..407504,407601..407603,407607..407609))
/locus_tag="BMA10229_A0387"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature complement(order(407337..407339,407484..407486))
/locus_tag="BMA10229_A0387"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature complement(order(407172..407177,407181..407186,
407190..407195,407205..407210,407214..407222,
407226..407228,407244..407255,407289..407297,
407310..407312,407373..407375,407397..407399))
/locus_tag="BMA10229_A0387"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
misc_feature complement(406608..406979)
/locus_tag="BMA10229_A0387"
/note="2-enoyl-CoA Hydratase C-terminal region; Region:
ECH_C; pfam13766"
/db_xref="CDD:205939"
gene complement(407732..408070)
/locus_tag="BMA10229_A0388"
/db_xref="GeneID:4790697"
CDS complement(407732..408070)
/locus_tag="BMA10229_A0388"
/note="identified by match to protein family HMM PF00893"
/codon_start=1
/transl_table=11
/product="SMR family multidrug efflux pump"
/protein_id="YP_001026388.1"
/db_xref="GI:124384427"
/db_xref="GeneID:4790697"
/translation="MQLPGYAWLAIAIVAEVVGTSALRAAEGFTRLWPTLVVALGYGT
AFYCLSLTLKSMPVGIVYAIWSGAGIVLITLVALVLYRQVPDWPAVVGLALIVAGVVV
LNLFSKMQAH"
misc_feature complement(407807..408055)
/locus_tag="BMA10229_A0388"
/note="Membrane transporters of cations and cationic drugs
[Inorganic ion transport and metabolism]; Region: EmrE;
COG2076"
/db_xref="CDD:224987"
gene complement(408075..408572)
/locus_tag="BMA10229_A0389"
/db_xref="GeneID:4793552"
CDS complement(408075..408572)
/locus_tag="BMA10229_A0389"
/note="identified by match to protein family HMM PF03928"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026389.1"
/db_xref="GI:124385179"
/db_xref="GeneID:4793552"
/translation="MDIALDLQSIAVQEKTLVFPQFDAARAWALGSQLREFALARGHA
VAIDVRTFGQPLFFALVDGATPDNVDWARRKGNVVAHFRRSSYAIGLRLQQAGATLAD
KHGLPAAEYASHGGAFPIAVAGAGVIGSVTVSGLPQRGDHELVVEALCAQLGHAYATL
ALTGN"
misc_feature complement(408087..408572)
/locus_tag="BMA10229_A0389"
/note="hypothetical protein; Provisional; Region:
PRK02487"
/db_xref="CDD:179430"
gene 408843..408919
/locus_tag="BMA10229_A0390"
/db_xref="GeneID:4792859"
tRNA 408843..408919
/locus_tag="BMA10229_A0390"
/product="tRNA-Met"
/db_xref="GeneID:4792859"
gene 409291..409836
/locus_tag="BMA10229_A0391"
/db_xref="GeneID:4791363"
CDS 409291..409836
/locus_tag="BMA10229_A0391"
/note="identified by match to protein family HMM PF00293"
/codon_start=1
/transl_table=11
/product="MutT/NUDIX NTP pyrophosphatase"
/protein_id="YP_001026390.1"
/db_xref="GI:124383496"
/db_xref="GeneID:4791363"
/translation="MKFCSVCGHEVIARIPPGDNRERFVCDQCGTIHYQNPRNVVGTI
PVWGDQVLLCRRAIEPRYGYWTLPAGFMEMGETTAEAAARETLEEAGARVEVQNLFTL
LNVPHVHQVHLFYLARLVDPSFEAGEESLEVRLFDEADIPWDEIAFPTVSQTLRFFFA
DREAGDYGVHTGDIFRSLRNG"
misc_feature 409366..409755
/locus_tag="BMA10229_A0391"
/note="Members of the Nudix hydrolase superfamily catalyze
the hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+, for their
activity and contain a highly...; Region:
Nudix_Hydrolase_4; cd04511"
/db_xref="CDD:239948"
misc_feature 409498..409566
/locus_tag="BMA10229_A0391"
/note="nudix motif; other site"
/db_xref="CDD:239948"
gene 409716..410612
/gene="aat"
/locus_tag="BMA10229_A0392"
/db_xref="GeneID:4793856"
CDS 409716..410612
/gene="aat"
/locus_tag="BMA10229_A0392"
/EC_number="2.3.2.6"
/note="leucyltransferase; phenylalanyltransferse;
functions in the N-end rule pathway; transfers Leu, Phe,
Met, from aminoacyl-tRNAs to N-terminal of proteins with
Arg or Lys"
/codon_start=1
/transl_table=11
/product="leucyl/phenylalanyl-tRNA--protein transferase"
/protein_id="YP_001026391.1"
/db_xref="GI:124384200"
/db_xref="GeneID:4793856"
/translation="MGRDRVPDRQPDAAILLRRPRGGRLWRPHGRHLPFAAQRLGARI
VPWLGPDDPFPSVERALGAASGAPGLLAASADLLPSRLIDAYRRGIFPWYSDGQPVLW
WSPDPRMILVPAEFRISATFRKTLKRVLREPRWEIRVDYDFAGVMRACAQAPRRGQRG
TWITAEIIDAYSSLHRAGDAHSIETWLDGRRVGGLYGVSFGRMFFGESMYAHASDASK
IALAALVAHLREHRVEMIDCQQNTSHLASLGGREIARKTFVAHVRRAVAEPPIPWRFD
KRVVAGLLGQAASATAADAFDR"
misc_feature 409848..410546
/gene="aat"
/locus_tag="BMA10229_A0392"
/note="leucyl/phenylalanyl-tRNA--protein transferase;
Reviewed; Region: aat; PRK00301"
/db_xref="CDD:178969"
gene 410646..411476
/locus_tag="BMA10229_A0393"
/db_xref="GeneID:4790740"
CDS 410646..411476
/locus_tag="BMA10229_A0393"
/EC_number="2.3.2.8"
/note="Conjugates Arg from its aminoacyl-tRNA to the
N-termini of proteins containing an N-terminal aspartate
or glutamate"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA-protein transferase"
/protein_id="YP_001026392.1"
/db_xref="GI:124384886"
/db_xref="GeneID:4790740"
/translation="MTHPTELPLSPLSALQFYATAPYPCSYLDGRVARSQVATPSHLI
NSDIYTELVKAGFRRSGVFTYRPYCDGCRACVPVRVPVDAFAPNRTQRRTWKRHRALV
ATVAALHYDEEHYALYMRYQSARHAGGGMDRDSRDQYEQFLLQSRINSRLVEFRDLDP
AENGASTLRMVSMIDILGDGLSSVYTFFDPDESHASYGTYNILWQIEQAKSLRLPYVY
LGYWIRESPKMAYKANFHPLEGLVDGRWKVLDPTLADLPPVDAALARAPLPGGHSGTR
"
misc_feature 410673..411386
/locus_tag="BMA10229_A0393"
/note="arginyl-tRNA-protein transferase; Provisional;
Region: PRK01305"
/db_xref="CDD:179277"
misc_feature 410691..410924
/locus_tag="BMA10229_A0393"
/note="Arginine-tRNA-protein transferase, N terminus;
Region: ATE_N; pfam04376"
/db_xref="CDD:202988"
misc_feature 410979..411383
/locus_tag="BMA10229_A0393"
/note="Arginine-tRNA-protein transferase, C terminus;
Region: ATE_C; pfam04377"
/db_xref="CDD:190959"
gene 411581..412618
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/db_xref="GeneID:4793108"
CDS 411581..412618
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/EC_number="1.3.98.1"
/note="catalyzes the conversion of dihydroorotate to
orotate in the pyrimidine biosynthesis pathway; uses a
flavin nucleotide as an essential cofactor; class 2
enzymes are monomeric and compared to the class 1 class 2
possess an extended N terminus, which plays a role in the
membrane association of the enzyme and provides the
binding site for the respiratory quinones that serve as
physiological electron acceptors"
/codon_start=1
/transl_table=11
/product="dihydroorotate dehydrogenase 2"
/protein_id="YP_001026393.1"
/db_xref="GI:124383953"
/db_xref="GeneID:4793108"
/translation="MFSSLYPLARASLFKMDAEDAHHLTLRMLGAAGRTGLACALSPR
VPDAPRTVMGLSFRNPVGLAAGLDKDGAAIDGFAALGFGFIEVGTVTPRAQPGNPRPR
MFRLPEADAIINRMGFNNSGVDQFVKNVQAARYRGVLGLNIGKNADTPIERAADDYLY
CLERVYPFASYVTINISSPNTKNLRQLQGAGELDALLAALKDKQRRLADLHGKLVPLA
LKIAPDLDDEQVKEIAATLLRHDIEGVIATNTTLSREAVKGLPHADEAGGLSGRPVFD
ASNAVIRKLRAELGDAVPIIGVGGIFSGEDARAKLAAGAALVQLYTGFIYRGPALVAE
CVKAIARGEAR"
misc_feature 411596..412600
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/note="dihydroorotate dehydrogenase, subfamily 2; Region:
pyrD_sub2; TIGR01036"
/db_xref="CDD:200068"
misc_feature 411608..412597
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/note="Dihydroorotate dehydrogenase (DHOD) class 2. DHOD
catalyzes the oxidation of (S)-dihydroorotate to orotate.
This is the fourth step and the only redox reaction in the
de novo biosynthesis of UMP, the precursor of all
pyrimidine nucleotides. DHOD requires...; Region:
DHOD_2_like; cd04738"
/db_xref="CDD:73400"
misc_feature order(411644..411646,411893..411895)
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/note="quinone interaction residues [chemical binding];
other site"
/db_xref="CDD:73400"
misc_feature order(411773..411775,411785..411787,411845..411847,
411920..411922,411926..411934,412103..412105,
412112..412114,412118..412120,412238..412240,
412322..412330,412391..412393,412478..412480,
412541..412546)
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/note="active site"
/db_xref="CDD:73400"
misc_feature order(411785..411787,412112..412114,412238..412240)
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/note="catalytic residues [active]"
/db_xref="CDD:73400"
misc_feature order(411845..411847,411920..411922,412103..412105,
412238..412240,412322..412327,412391..412393,
412478..412480,412541..412546)
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73400"
misc_feature order(411920..411922,412103..412105,412109..412111,
412325..412330)
/gene="pyrD"
/locus_tag="BMA10229_A0394"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73400"
gene 412729..413523
/locus_tag="BMA10229_A0395"
/db_xref="GeneID:4791034"
CDS 412729..413523
/locus_tag="BMA10229_A0395"
/note="identified by match to protein family HMM PF00497"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter substrate-binding
protein"
/protein_id="YP_001026394.1"
/db_xref="GI:124385440"
/db_xref="GeneID:4791034"
/translation="MKIASLKKLLVTGLIGASFAAATAHAADLLDEVKQRGTLRIGLE
GTFPPFNSKNPQGELVGFDVDIAKAIAAKLGVKPEFVTTEWSGIIAGLQAGKFDVIVN
QVGITDPRKQTLDFSPAYTFSSAQLIQRKDDARQFKSLEDLKGKKLGVALGTNYMDMA
KSVPGIDVKTYPGAPEYLRDLAAGRLDAALNDRLMLAYLTKNAQLPLRPGANVGSANP
SGIPFKKGNPKFAKAIADAMTQLEADGTFTKISDKWFGIDVTKPVK"
misc_feature 412729..413511
/locus_tag="BMA10229_A0395"
/note="cystine transporter subunit; Provisional; Region:
PRK11260"
/db_xref="CDD:183061"
misc_feature 412843..413493
/locus_tag="BMA10229_A0395"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature order(412867..412869,412981..412983,413056..413058,
413191..413193,413302..413304)
/locus_tag="BMA10229_A0395"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature order(413251..413253,413263..413265,413281..413283)
/locus_tag="BMA10229_A0395"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature 413377..413394
/locus_tag="BMA10229_A0395"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene 413620..414312
/locus_tag="BMA10229_A0396"
/db_xref="GeneID:4792553"
CDS 413620..414312
/locus_tag="BMA10229_A0396"
/note="identified by match to protein family HMM PF00528;
match to protein family HMM TIGR01726"
/codon_start=1
/transl_table=11
/product="His/Glu/Gln/Arg/opine amino acid ABC transporter
permease"
/protein_id="YP_001026395.1"
/db_xref="GI:124383656"
/db_xref="GeneID:4792553"
/translation="MIALSRTPPLHMPITSLLAQSLPVLLQGALLTVKFAVLSMLFGL
VGAVALALMGIGRSRVLAGLARAYVSVMRGTPLLVQIFVVYYGLPSLGVSLDPTPAGV
IALSANVAAYMSESMRGAINGIDKGQWLAAYSLGLSWRQTLRYVIGPQALRIAVPSLS
NSLISLIKDTSLVSVITVTELLRSAQEIIASTYQPLPLYLAAAAVYWVLCQILEWVQR
WYERRLALPSRH"
misc_feature 413704..>414150
/locus_tag="BMA10229_A0396"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(413752..413757,413764..413769,413782..413784,
413812..413823,413827..413856,413863..413868,
413872..413874,413938..413943,413947..413949,
413953..413955,413962..413967,413971..413973,
413983..413988,413995..413997,414046..414048,
414088..414093,414100..414102,414121..414132,
414139..414144)
/locus_tag="BMA10229_A0396"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(413830..413874,414121..414138)
/locus_tag="BMA10229_A0396"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(413872..413874,413923..413925,414139..414141)
/locus_tag="BMA10229_A0396"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(413998..414036,414052..414057,414067..414069)
/locus_tag="BMA10229_A0396"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 414509..414772
/locus_tag="BMA10229_A0397"
/db_xref="GeneID:4794016"
CDS 414509..414772
/locus_tag="BMA10229_A0397"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfA"
/protein_id="YP_001026396.1"
/db_xref="GI:124386046"
/db_xref="GeneID:4794016"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLAEAMLDMEALKVVVKGKP"
misc_feature 414512..414709
/locus_tag="BMA10229_A0397"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene 414796..415629
/locus_tag="BMA10229_A0398"
/db_xref="GeneID:4792079"
CDS 414796..415629
/locus_tag="BMA10229_A0398"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS1404 transposase"
/protein_id="YP_001026397.1"
/db_xref="GI:124385044"
/db_xref="GeneID:4792079"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature 414853..415569
/locus_tag="BMA10229_A0398"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature 414898..415068
/locus_tag="BMA10229_A0398"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature 415114..415452
/locus_tag="BMA10229_A0398"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 415363..415563
/locus_tag="BMA10229_A0398"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(415674..416078)
/locus_tag="BMA10229_A0399"
/db_xref="GeneID:4793085"
CDS complement(415674..416078)
/locus_tag="BMA10229_A0399"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001026398.1"
/db_xref="GI:124385004"
/db_xref="GeneID:4793085"
/translation="MRQHHPLSILLNVAGLARSTFYYQQKVLLAGDRYAALKQRIRAI
YESHRGRYGYRRITAVIRQAGTPVNHKLVRRLMLQLGLKSLVRAKKYRSWRGMVGCVA
PNLLNRQFKAERLNQKWVTDVTEFNVKGQKLY"
misc_feature complement(415809..415973)
/locus_tag="BMA10229_A0399"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
gene complement(416664..416789)
/locus_tag="BMA10229_A0400"
/db_xref="GeneID:4793045"
CDS complement(416664..416789)
/locus_tag="BMA10229_A0400"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026399.1"
/db_xref="GI:124384792"
/db_xref="GeneID:4793045"
/translation="MSVIGRRAEGVARHSRRRPARDAGIETASKRHQNENGRRVN"
gene complement(416786..417895)
/gene="aroC"
/locus_tag="BMA10229_A0401"
/db_xref="GeneID:4793195"
CDS complement(416786..417895)
/gene="aroC"
/locus_tag="BMA10229_A0401"
/EC_number="4.2.3.5"
/note="catalyzes the formation of chorismate from
5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino
acid biosynthesis"
/codon_start=1
/transl_table=11
/product="chorismate synthase"
/protein_id="YP_001026400.2"
/db_xref="GI:162320519"
/db_xref="GeneID:4793195"
/translation="MSGNTLGTLFTVTTFGESHGPAIGCVIDGCPPGMALTEADVQLE
LDRRKPGTSRHVTQRQEPDQVEILSGVFEGVTTGAPIALLIRNTDQRSKDYGNIAETF
RPGHADYTYWQKYGVRDYRGGGRSSARLTAPVVGAGAIAKKWLCERFGVEVRGYMSAL
GEIEIPFVDWSHVRENPFFAPNADIVPQLEDYMDALRKDGDSIGARIDVVASGVPVGW
GEPLFDRLDADIAHAMMGINAVKGVEIGAGFASVAQRGSVHGDELTPDGFVGNHAGGV
LGGISTGQDITVSIAIKPTSSIRTPRRSITRAGEPAVVETFGRHDPCVGIRATPIAES
MLALVLIDHALRHRAQCGDVSSATPRIAARAPDAQ"
misc_feature complement(416867..417847)
/gene="aroC"
/locus_tag="BMA10229_A0401"
/note="Chorismase synthase, the enzyme catalyzing the
final step of the shikimate pathway; Region:
Chorismate_synthase; cd07304"
/db_xref="CDD:143612"
misc_feature complement(order(416891..416893,417005..417007,
417014..417025,417029..417031,417050..417058,
417062..417070,417077..417079,417125..417130,
417140..417145,417149..417154,417161..417175,
417182..417184,417188..417193,417197..417205,
417212..417217,417221..417223,417233..417241,
417245..417247,417278..417295,417308..417310,
417494..417496,417518..417523,417551..417565,
417644..417646,417650..417652,417656..417658,
417662..417667,417686..417691,417695..417700,
417797..417802,417812..417814,417818..417820,
417824..417826,417845..417847))
/gene="aroC"
/locus_tag="BMA10229_A0401"
/note="Tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:143612"
misc_feature complement(order(416912..416914,416924..416926,
417005..417013,417017..417022,417179..417184,
417500..417502,417509..417520,417578..417583,
417752..417754,417839..417841))
/gene="aroC"
/locus_tag="BMA10229_A0401"
/note="active site"
/db_xref="CDD:143612"
misc_feature complement(order(416915..416917,416924..416926,
416933..416935,417005..417013,417017..417019,
417179..417187,417515..417517,417521..417523,
417575..417583))
/gene="aroC"
/locus_tag="BMA10229_A0401"
/note="FMN-binding site [chemical binding]; other site"
/db_xref="CDD:143612"
gene complement(418260..418379)
/locus_tag="BMA10229_A0402"
/db_xref="GeneID:4791124"
CDS complement(418260..418379)
/locus_tag="BMA10229_A0402"
/codon_start=1
/transl_table=11
/product="acyltransferase"
/protein_id="YP_001026401.1"
/db_xref="GI:124386215"
/db_xref="GeneID:4791124"
/translation="MKRGVMSRLTLAVGEPIPAAAATPEALQAVVAELRGARK"
gene complement(418376..420190)
/locus_tag="BMA10229_A0403"
/db_xref="GeneID:4791887"
CDS complement(418376..420190)
/locus_tag="BMA10229_A0403"
/note="identified by match to protein family HMM PF01553;
match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="transporter"
/protein_id="YP_001026402.1"
/db_xref="GI:124386270"
/db_xref="GeneID:4791887"
/translation="MSDPSITSTARREKRRAHPSQFDLLRERRFAPFFATQFMGALND
NVFKIGFTSLVTYQTAKFSGVDPKTAAFLISAIFILPFVLFSATAGQLADKYDKARLT
RFVKSFEIALMAVGAAGFVTHGAPLLYLCTFMMGMHSTLFGPVKYSYLPQHLNDHELV
GGNGLVEMGTFVAILIGTIVGGAAAGISGRGELLLAVCCVGIALVGRVAAAGVPATPA
PQPKLAINWNPFSETWRNLKLARENRTVFLSLLGISWLWFVGATFLTSFFGFAKDVLS
ANPDVVTVLLATFSFGIGLGSLLCERLSRRRVEIGLVPLGSLGISVFAIELYFASHAL
PTQTHLLTIGEFLGHAAHWRILADLFLLAMFGGFYSVPLYALIQSRSAPTHRARIIAA
NNILNALFMIVSALMAMLLTKAGVSIPGIFLVTALLNVVVASYIYSLVPEFLLRFIAW
ALVHTFYRIRLVHAERIPDEGAALLVCNHVSYVDALVLAAASPRPIRFVMDHRIFNTR
FASWAFRHAKAIPIAPRHEDPEMLARAYDACEAALREGELVCIFPEGKLTKTGDVNTF
HHGVTEILTRARPSCRWRCADYGAACFRGTRTRAGRAR"
misc_feature complement(418907..420109)
/locus_tag="BMA10229_A0403"
/note="lysophospholipid transporter LplT; Provisional;
Region: PRK11195"
/db_xref="CDD:183032"
misc_feature complement(<418457..418978)
/locus_tag="BMA10229_A0403"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:30553"
misc_feature complement(<418457..418858)
/locus_tag="BMA10229_A0403"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature complement(order(418520..418528,418682..418693,
418739..418741,418745..418747,418754..418756))
/locus_tag="BMA10229_A0403"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
gene complement(420290..420754)
/locus_tag="BMA10229_A0404"
/db_xref="GeneID:4791761"
CDS complement(420290..420754)
/locus_tag="BMA10229_A0404"
/note="identified by match to protein family HMM PF00571"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026403.1"
/db_xref="GI:124383341"
/db_xref="GeneID:4791761"
/translation="MRVSDILKVKGNTLFTVTPDTPLRSAVDTMAEHDIGSLVVMEYG
DLVGILTFREIILRLKANGGSIGEVLVRTVMDEPLTCTPETDIDEVRRMMLERHARYM
PVLDKKVLMGVISFYDVAKTVVEAQSFENRMLKAYIRDWPEPDSEERKPLAS"
misc_feature complement(420398..420739)
/locus_tag="BMA10229_A0404"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:223591"
misc_feature complement(420392..420721)
/locus_tag="BMA10229_A0404"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair; cl15354"
/db_xref="CDD:246936"
gene 420971..421291
/locus_tag="BMA10229_A0405"
/db_xref="GeneID:4791264"
CDS 420971..421291
/locus_tag="BMA10229_A0405"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026404.1"
/db_xref="GI:124384845"
/db_xref="GeneID:4791264"
/translation="MAHSAHTEHFASFAEFYPFYLDEHRHLVSRRLHFVGSLGVIGCL
AMALATGLWWWLPAAVVCGYGFAWIGHFFFEKNRPATFRHPIYSLMGDWVMFKDICTG
KISI"
misc_feature 420992..421282
/locus_tag="BMA10229_A0405"
/note="Protein of unknown function (DUF962); Region:
DUF962; cl01879"
/db_xref="CDD:242759"
gene complement(421463..422773)
/gene="rbn"
/locus_tag="BMA10229_A0406"
/db_xref="GeneID:4793248"
CDS complement(421463..422773)
/gene="rbn"
/locus_tag="BMA10229_A0406"
/EC_number="3.1.-.-"
/note="identified by match to protein family HMM PF03631;
match to protein family HMM TIGR00765"
/codon_start=1
/transl_table=11
/product="ribonuclease BN"
/protein_id="YP_001026405.1"
/db_xref="GI:124383383"
/db_xref="GeneID:4793248"
/translation="MPKLSVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVP
LVTVAFALFTAFPMFASFQNSLQGFLADHLMPAQFNSQIFKYLNQFASKAKGLTTAGL
IVLVFTAVMMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSMSSYLF
TKSLAFAGSTSTPPVFEWLLAAASLPLTVLAFTLLYVYLPNCTVAWRDAVVGGVCAAL
AFELAKRGFGYYVRRIPTYTAVYGAFATVPMFLLWLYLSWFVTLAGAMIASALPAIRV
GQFHRIHYPGSDLLDSLELLARLADAQQAGKPGHTAARLALMARCDMETAQRLLSTLE
EREWVARLQSGNDAAPRYVMLANPERLTVANLFDVLVIDRSELVYQAQRGRTEVDCAT
LVDAFTSEKLDLSLAELIARRRQGASRDAPGAAHSTSALPPRTA"
misc_feature complement(421949..422716)
/gene="rbn"
/locus_tag="BMA10229_A0406"
/note="Virulence factor BrkB; Region: Virul_fac_BrkB;
cl07918"
/db_xref="CDD:208798"
gene 422879..423487
/locus_tag="BMA10229_A0407"
/db_xref="GeneID:4791306"
CDS 422879..423487
/locus_tag="BMA10229_A0407"
/note="identified by match to protein family HMM PF00258;
match to protein family HMM PF03358"
/codon_start=1
/transl_table=11
/product="flavodoxin"
/protein_id="YP_001026406.1"
/db_xref="GI:124384297"
/db_xref="GeneID:4791306"
/translation="MKDILVLYYSRHGATRELALAIAAGIDSVPGMQARIRTVPPVST
VCEATQPDIPDDGPPYAEPRDLDECAGLALGSPTRFGNMAAPLKYFLDGTTPQWLSGA
LAGKPACVFTSTGSLHGGQESTLLSMMLPLLHHGMLIVGIPYTETALSVTQTGGTPYG
ASHFARVADPARERISADEKTLAHALGARLARTASQLGAAAA"
misc_feature 422879..423469
/locus_tag="BMA10229_A0407"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
cl00438"
/db_xref="CDD:212217"
gene 423484..423933
/locus_tag="BMA10229_A0408"
/db_xref="GeneID:4793703"
CDS 423484..423933
/locus_tag="BMA10229_A0408"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026407.1"
/db_xref="GI:124385107"
/db_xref="GeneID:4793703"
/translation="MSAPVAAKPLAAHAAALCLVALIALGVAWEAWLAPLRPGGSALI
LKAVPLALALPGVWRRSVYTLQWASMLILIYLAEGIVRGMTDGGLSARLGWLEAALAL
GFFGAALAYVAPYKRAAKQAARRAAKRAEQPEKHAPARARASDRTRP"
misc_feature 423568..>423750
/locus_tag="BMA10229_A0408"
/note="Predicted membrane protein (DUF2069); Region:
DUF2069; pfam09842"
/db_xref="CDD:204330"
gene 423968..425389
/locus_tag="BMA10229_A0409"
/db_xref="GeneID:4792969"
CDS 423968..425389
/locus_tag="BMA10229_A0409"
/note="identified by match to protein family HMM PF01565;
match to protein family HMM PF02913"
/codon_start=1
/transl_table=11
/product="oxidoreductase, FAD-binding"
/protein_id="YP_001026408.1"
/db_xref="GI:124386166"
/db_xref="GeneID:4792969"
/translation="MTSTSAFVDACRHAIGADHVLTDSHDTAPFLTDWRRRYQGAACA
VLRPANTEEVAALVKLALEHRVALVPQGGNTGLAGGATPDAGGKQAVLSLARLNRVRA
LDPHNNTITVEAGVILADAQARARDADRLFALSLAAEGSCTIGGNLATNAGGTAVLRY
GNARELCLGLEVVTAQGEVWDGLRGLRKDNTGYDLRDLFIGAEGTLGIITAAVMKLHP
LPAAKVTALAALESPHAALDFLALAQRAAGPLLTGFELMSDFCMKLVGKHYPQLRYPF
DAAHPQTVLLELSDNESEAHARALFETMMEQAFEAGLVVDAVVAENLAQSRAFWDLRE
HIPLAQADEGLNIKHDIAVPISAIAHFIDETDAAIQAAAPGARMVTFGHLGDGNLHYN
VQMPEGGDPKAFLAEHQAPINRIVYDNVHKHRGTISAEHGIGQLKIDDAQRYKAAVEI
RLMRALKAALDPLNLMNPGKVLH"
misc_feature 423995..425383
/locus_tag="BMA10229_A0409"
/note="FAD/FMN-containing dehydrogenases [Energy
production and conversion]; Region: GlcD; COG0277"
/db_xref="CDD:30625"
misc_feature 424097..424504
/locus_tag="BMA10229_A0409"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
gene 425421..426404
/locus_tag="BMA10229_A0410"
/db_xref="GeneID:4791838"
CDS 425421..426404
/locus_tag="BMA10229_A0410"
/note="identified by match to protein family HMM PF00149"
/codon_start=1
/transl_table=11
/product="Ser/Thr protein phosphatase"
/protein_id="YP_001026409.1"
/db_xref="GI:124386435"
/db_xref="GeneID:4791838"
/translation="MKVRVLSDLHLECNEPEAIAHAQADLVVLAGDIHNHAEGLRWAA
QTFDPAVPVVYVPGNHEYYDGEFGALETAMRDAAAALDHVHYLNNDVYVDPAGRFRVL
GTTLWTDFELFGNDAAALSQSIAACERVMLDFKGLIQVDWPGGADASSGESSGASREA
LREALRDAAAECAPNASPEESAPRRAMQTPAGASAPAATADAPAPGPRHFAPRDALAL
HRTARAWLERELAKPWPGATIVVTHHAPLRASLAPRYADDLASAGFISDLATLVRPPV
SLWIHGHTHTSFDYTTAQGTRVVCNPHGYIRRRTGERENPSFEWGKVVTLA"
misc_feature 425424..>425759
/locus_tag="BMA10229_A0410"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature 425430..>425828
/locus_tag="BMA10229_A0410"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
misc_feature order(425442..425444,425448..425450,425514..425516,
425595..425600)
/locus_tag="BMA10229_A0410"
/note="active site"
/db_xref="CDD:163614"
misc_feature order(425442..425444,425448..425450,425514..425516,
425595..425597)
/locus_tag="BMA10229_A0410"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
misc_feature <426126..426335
/locus_tag="BMA10229_A0410"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
gene complement(426436..426597)
/locus_tag="BMA10229_A0411"
/db_xref="GeneID:4791564"
CDS complement(426436..426597)
/locus_tag="BMA10229_A0411"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026410.1"
/db_xref="GI:124383454"
/db_xref="GeneID:4791564"
/translation="MLMGFGALALFGAIGIAASRELLRAIDAQQRRAPVPVRVRTRRP
HRDGRRTVL"
gene complement(426748..427689)
/locus_tag="BMA10229_A0412"
/db_xref="GeneID:4793814"
CDS complement(426748..427689)
/locus_tag="BMA10229_A0412"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_001026411.1"
/db_xref="GI:124384622"
/db_xref="GeneID:4793814"
/translation="MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHL
RTRLLNRTTRRIALTEAGERYLQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSL
GQHYTVPAVSRYRQRYPEVQVDLTLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLG
ETFSVVCASRGYIEQHGAPQRPQDLAGHVCLGMVAPGLYWDEWKLVGPQGEQSVTLAP
PPFRVNVAEALAAGIREGMGIGVLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALYAS
RQYLDAKIRTWVDFLRDELPSILEADEAALERFTVQT"
misc_feature complement(426811..427689)
/locus_tag="BMA10229_A0412"
/note="transcriptional regulator; Provisional; Region:
PRK10632"
/db_xref="CDD:182601"
misc_feature complement(427501..427680)
/locus_tag="BMA10229_A0412"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(426817..427416)
/locus_tag="BMA10229_A0412"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(426880..426882,426961..426963,
427012..427014,427204..427206,427210..427212,
427255..427257,427372..427374,427384..427386))
/locus_tag="BMA10229_A0412"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(426985..426987,426994..426999,
427018..427032,427123..427125,427309..427329,
427333..427335,427345..427347,427354..427359,
427363..427368,427378..427383))
/locus_tag="BMA10229_A0412"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene 427862..429610
/locus_tag="BMA10229_A0413"
/db_xref="GeneID:4793387"
CDS 427862..429610
/locus_tag="BMA10229_A0413"
/note="identified by match to protein family HMM PF02321;
match to protein family HMM TIGR01845"
/codon_start=1
/transl_table=11
/product="RND efflux system, outer membrane lipoprotein,
NodT family protein"
/protein_id="YP_001026412.1"
/db_xref="GI:124385252"
/db_xref="GeneID:4793387"
/translation="MRGTLALAVLAISLIMAGCASMGDVAPQDKQVDPASLDAGAAIA
AAERDAGWPAADWWRAYRDPQLDSWIVASLAGNPSLAAAQARVREAQSLARIAHAEEL
PQLNGNLSLMRQHWPDNVYYGPGPLANADTWNNTGTLSLSYHLDLWGKDKHNAERALD
AARARAADARAAQLELEANVVRAYVDFAKNYALLDIAHATYERQNALAELARKRLRAG
IGTQLEVSQAEAPLPDYSRQIDSYEEAIQLGRHQLAALAGKGPGAGASLARPKLALDA
NAALPSALPAELLGRRPDIVAARWMVDAQARGIDVAKAAFYPNVDLIASLGGFAVSAP
FATFLRAMNGGWSAGPALTLPIFEGGRLRAQLGVASAGYDQAVEHYNQTIVGALKDIA
DNVVRLHSLDSQQKDAARAVSLTRRSYDLSHAGFSRGLTDYVNVLIAQSQLLTAQENQ
TRIEAARLAAHASLMVALGGGLETGRDAPHDAPAGDARRTGASGASGASGASGASGAS
STAGASATASASAAGHAPAGAAAPASPAGIRAAASARASMPAPAAAATAPAFASPVAG
ASTPMPAATAAARAAR"
misc_feature 428015..429274
/locus_tag="BMA10229_A0413"
/note="efflux transporter, outer membrane factor (OMF)
lipoprotein, NodT family; Region: outer_NodT; TIGR01845"
/db_xref="CDD:162557"
gene 429627..431828
/locus_tag="BMA10229_A0414"
/db_xref="GeneID:4792751"
CDS 429627..431828
/locus_tag="BMA10229_A0414"
/note="identified by match to protein family HMM PF04632"
/codon_start=1
/transl_table=11
/product="fusaric acid resistance protein"
/protein_id="YP_001026413.1"
/db_xref="GI:124384798"
/db_xref="GeneID:4792751"
/translation="MSAASPPSAATPQSAGAAFVASMSDWARTDGAAWLYLAKALAAA
FLALGVSMVLDLPAPKTAMTTVFIVMQPQSGAVFAKSFYRLIGTFVGLTATLALVGLF
PQQPVLFLLAVALWVAACTAGAARNRNFRSYGFLLAGYTAALIGLPASQAPNGAFMTA
MTRVSEISVGILSAGIVSALIFPQYTGEQMRTTVRRRFGAFVDYVAAALAGALDRSKI
ESVHTRFVADVVGFEAARSMAVFENPDTRMRSGRLSRLNSEFMTASSRFHSLHQLMNR
LHATSAQAVDALEPYFREIAPLLSNDGDHVRTSADAARAAEQLLAYRDALPRRIRATR
AEHETQPAFPLLDFDTASELLYRFITDLHAYAATYASLAASTHARERWIERYEPRTNA
TAALIAGIRTASVMLLLSVFWIYSAWPSGVMLVLNAAAVCALASSSPQPTRMAAQMAL
GTAFAVATGFVLMFGVYPHIDGFVLLCAALAPFLAPGVLMSLKPKYAGCGAGYLIFFC
TLAGPENLTHYDPIGFMNDALALVLSMIVSAIAFAVLFPPSAPWLKKRLFADLRHQAV
AACHARLPGLRTRFESGARDLMFQAHGLSADQPDAQRDALRWMFAVLETGNAVIDLRH
ELAALPRDPRYAATMPWRRKIEAARDALAALFDKPAPARFDAALAAAVDAIAATQQAL
VAFAPPREERHQMQRILSQLHFVRTALLDPESPLAALNGARTPTDRPGVSS"
misc_feature 429771..431774
/locus_tag="BMA10229_A0414"
/note="Fusaric acid resistance protein family; Region:
FUSC; pfam04632"
/db_xref="CDD:203061"
misc_feature 429771..430148
/locus_tag="BMA10229_A0414"
/note="Fusaric acid resistance protein-like; Region:
FUSC_2; pfam13515"
/db_xref="CDD:205693"
gene 431825..432028
/locus_tag="BMA10229_A0415"
/db_xref="GeneID:4793201"
CDS 431825..432028
/locus_tag="BMA10229_A0415"
/note="identified by match to protein family HMM PF07869"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026414.1"
/db_xref="GI:124385655"
/db_xref="GeneID:4793201"
/translation="MMPRDLAILDAYVPTVVLMFVIGAFATWLIDRLLAYTGLYRVVW
HPSLFRASLLVCICGGLSLAVYR"
misc_feature 431834..432007
/locus_tag="BMA10229_A0415"
/note="Protein of unknown function (DUF1656); Region:
DUF1656; pfam07869"
/db_xref="CDD:203786"
gene 432042..432923
/locus_tag="BMA10229_A0416"
/db_xref="GeneID:4792409"
CDS 432042..432923
/locus_tag="BMA10229_A0416"
/note="identified by match to protein family HMM PF00529"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026415.1"
/db_xref="GI:124386198"
/db_xref="GeneID:4792409"
/translation="MFLRKLFGFVATAVILIVAILIGRTLWVHYMDEPWTRDGRVRAE
IVNVAPDVSGAVVELPVRDNQFVKQGDLVMQIDPSHFRIAVEQAQAAVAARRAELQMR
RADAARRADLDALVVSKESRENSAQTASSAEAQYQQALAALDAAKLNLERTRVVAPVD
GYVTNLQVFRGDYASAGQAKLAIVDSHSFWVYGYFEETKLPRVKIGAKAEMRLMSGGV
LKGHVESISRGIYDRDNPQSRDLVADVNPTFNWVRLAQRVPVRIHIDEVPKDLVLSAG
TTCTVIVEPDGGGKRKS"
misc_feature 432120..432890
/locus_tag="BMA10229_A0416"
/note="p-hydroxybenzoic acid efflux subunit AaeA;
Provisional; Region: PRK10559"
/db_xref="CDD:182548"
misc_feature 432177..>432290
/locus_tag="BMA10229_A0416"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 432501..432746
/locus_tag="BMA10229_A0416"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 433155..433298
/locus_tag="BMA10229_A0418"
/db_xref="GeneID:4791870"
CDS 433155..433298
/locus_tag="BMA10229_A0418"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026416.1"
/db_xref="GI:124383534"
/db_xref="GeneID:4791870"
/translation="MSGGMHAGDARSSARPLVRRARGACRCGALRHAGRVASAQPAAC
AGK"
gene complement(433271..434947)
/locus_tag="BMA10229_A0417"
/db_xref="GeneID:4793894"
CDS complement(433271..434947)
/locus_tag="BMA10229_A0417"
/note="identified by match to protein family HMM PF00015"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_001026417.1"
/db_xref="GI:124383794"
/db_xref="GeneID:4793894"
/translation="MKGVSLHGKHFLPDDATGNRGRTPKPGKPRRARRAWSVKTTLRA
AFALLLVGTLAVGLFSLAQISRLNSSIRSVYEQGHVASRAAEEVRASVLRASRAQKML
ITATTAKERDELGADIDKGLAAIGAELATLQRHADGAADDAARLKAFGAAVLAWSAHL
RDFVKLVREQPLDLSQMSWQVGSQDVSLLVETGKLEKLVDGLVDARGDASKATLDASG
AIFRESFAMLAAMTAALVVLAFVIAAWVVRRLGAQLGGEPAYAKEIAVSISRGDLSNV
IRLDTRDHDSMLHALRDMQEGLAGTVREISASAEAIASAAGEIAMGNLDLSQRTEQQA
VALERTATSMGQLTSTVHQNAENARQASTLAANASSVAEAGGTVVGRVVSTMNEIDES
AKSIRDIIGVIESIAFQTNILALNAAVEAARAGEEGRGFSVVASEVRSLAQRSASAAK
EIKALIGASVERVANGAVLAQDAGRTMDEVVRAVKRVTDIMGEISAASSEQSAGIDAI
ERAVTQMDAGTQQNAALVEEAAAAARSLDEQAQMLKEMVGRFHLPAHAAG"
misc_feature complement(433295..433975)
/locus_tag="BMA10229_A0417"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:214599"
misc_feature complement(433382..433957)
/locus_tag="BMA10229_A0417"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(433382..433387,433394..433396,
433403..433408,433412..433417,433424..433429,
433433..433438,433445..433447,433454..433459,
433466..433468,433475..433480,433487..433492,
433496..433501,433508..433510,433517..433522,
433529..433531,433538..433543,433580..433585,
433592..433597,433601..433606,433613..433618,
433625..433627,433634..433639,433646..433648,
433655..433657,433667..433669,433688..433690,
433697..433699,433709..433711,433718..433723,
433730..433732,433739..433741,433748..433753,
433760..433765,433772..433774,433781..433786,
433790..433792,433802..433807,433811..433816,
433823..433825,433832..433837,433844..433849,
433856..433858,433865..433870,433877..433879,
433886..433891,433895..433900,433907..433909,
433916..433921,433928..433933))
/locus_tag="BMA10229_A0417"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(433622..433723)
/locus_tag="BMA10229_A0417"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 435299..436549
/locus_tag="BMA10229_A0419"
/db_xref="GeneID:4791217"
CDS 435299..436549
/locus_tag="BMA10229_A0419"
/note="identified by match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="fosmidomycin resistance protein"
/protein_id="YP_001026418.1"
/db_xref="GI:124384439"
/db_xref="GeneID:4791217"
/translation="METSLDNRPSVARAAASPAPAAVSRTVYPVLGAISFSHLLNDMI
QSLILAIYPMLKSEFSLSFAQIGLITLTYQITASLLQPVIGLYTDKRPQPFSLPVGMG
FTLTGLLLMAFAPTFPFLLVAAALVGCGSSVFHPESSRVARMASGGRHGLAQSLFQVG
GNAGSSLGPLLAALIVIPHGQRSIAWFSAAALVAIFVLVQIGRWYRRHPAAKKKAAHA
AHPTLSRQQVGLALGVLVMLVFSKYFYLASINSYFTFYLIDKFHLSVQAAQIHLFVFL
AAVAAGTIIGGPVGDRIGRKYVIWTSILGVAPFTLMLPYANLFWTTVLTIVIGVVLAS
AFAAIIVYGQELIPGKVGTVAGLFFGLSFGLGGVGAAVLGQLADATSIAFVYKVCSFL
PLIGVLTVFLPNVEGRTTLDKQRA"
misc_feature 435389..>436258
/locus_tag="BMA10229_A0419"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 435398..436258
/locus_tag="BMA10229_A0419"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature order(435431..435433,435440..435448,435452..435457,
435506..435508,435515..435520,435527..435529,
435539..435544,435548..435553,435689..435694,
435701..435706,435713..435718,435722..435724,
435758..435763,435770..435775,435791..435793,
436025..436027,436034..436039,436046..436051,
436058..436060,436100..436102,436112..436114,
436124..436126,436133..436135,436145..436147)
/locus_tag="BMA10229_A0419"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(436879..437667)
/gene="mtnN"
/locus_tag="BMA10229_A0420"
/db_xref="GeneID:4793565"
CDS complement(436879..437667)
/gene="mtnN"
/locus_tag="BMA10229_A0420"
/EC_number="3.2.2.9"
/note="enables the cleavage of the glycosidic bond in both
5'-methylthioadenosine and S-adenosylhomocysteine"
/codon_start=1
/transl_table=11
/product="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase"
/protein_id="YP_001026419.1"
/db_xref="GI:124386628"
/db_xref="GeneID:4793565"
/translation="MNQQTFFDRPLGILAALPEELGDLVAAMRDDGPVDTVTLGRRDY
HVGVAHGVRCVVTLARVGKVAAAATASALIHRFDVRAIVFTGVAGGVASDVSVGDVVV
ADALLQHDLDASPLFPRFEVPLLGLTRFAADAALAAQLKAACARFVDDEGETLNARFR
LHGARVHAGLIVSGDRFVSSEREVSALRDALPDALAVEMEGAALAQVCHEYGVPCAIV
RTISDTADDHASTSFTTFLTDIAGAYSSGILKRFLAAHARANAA"
misc_feature complement(436909..437643)
/gene="mtnN"
/locus_tag="BMA10229_A0420"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Validated; Region: PRK05584"
/db_xref="CDD:180148"
misc_feature complement(436918..437637)
/gene="mtnN"
/locus_tag="BMA10229_A0420"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Region: MTA/SAH-Nsdase; TIGR01704"
/db_xref="CDD:130765"
gene complement(437664..440027)
/gene="uvrD"
/locus_tag="BMA10229_A0421"
/db_xref="GeneID:4791412"
CDS complement(437664..440027)
/gene="uvrD"
/locus_tag="BMA10229_A0421"
/EC_number="3.6.1.-"
/note="identified by match to protein family HMM PF00580"
/codon_start=1
/transl_table=11
/product="DNA helicase II"
/protein_id="YP_001026420.1"
/db_xref="GI:124385882"
/db_xref="GeneID:4791412"
/translation="MPDLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWL
IRQGYAAPATVLAVTFTNKAAREMMARLAAMMPIDTRGMWIGTFHGLCNRMLRAHYRD
AGLPQTFQILDTADQLSAIKRLMKAANVDDEKYPPKNVQYFINNAKEQGLRPEKVDAT
DSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNPPLRAHYQARFKHILVDE
FQDTNKLQYAWLKLLAGGHNAIFAVGDDDQSIYAFRGANVGNMRDFEHEFRVRNLIKL
EQNYRSHGNILDAANHLIANNAHRLGKNLRTDAGHGEPVRVYEAATDAQEAAWIVEEI
RSLVNAGLARSEVAVLYRSNAQSRSIEHTLMTAGIAYRVYGGLRFFERQEVKHALAYL
RLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIPYVAGKAGSSLA
SFANLIAKMRAETAQMSLPETVEHVVRASGLADFYQGEREGQDRLENLQELVNAATAF
VSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNPDAMTPLA
GFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENSALESD
GLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKV
EAGARWGGRSDNAGWGRDWFARPGGGARQGVVDAAVSAPLPAFANQQREAQNGLRIGQ
QVFHTKFGEGTVTALEGSGTDAKAQVKFKRHGEKWLALAVAKLQAVE"
misc_feature complement(437670..440021)
/gene="uvrD"
/locus_tag="BMA10229_A0421"
/note="DNA-dependent helicase II; Provisional; Region:
uvrD; PRK11773"
/db_xref="CDD:183307"
misc_feature complement(<439839..439997)
/gene="uvrD"
/locus_tag="BMA10229_A0421"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(438090..>438257)
/gene="uvrD"
/locus_tag="BMA10229_A0421"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene 440167..443034
/gene="valS"
/locus_tag="BMA10229_A0422"
/db_xref="GeneID:4792096"
CDS 440167..443034
/gene="valS"
/locus_tag="BMA10229_A0422"
/EC_number="6.1.1.9"
/note="valine--tRNA ligase; ValRS; converts valine ATP and
tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I
aminoacyl-tRNA synthetase type 1 subfamily; has a
posttransfer editing process to hydrolyze mischarged
Thr-tRNA(Val) which is done by the editing domain"
/codon_start=1
/transl_table=11
/product="valyl-tRNA synthetase"
/protein_id="YP_001026421.1"
/db_xref="GI:124385477"
/db_xref="GeneID:4792096"
/translation="MSDTTLAKSFEPQTIESQWGPEWEKRGYATPALDPSRPDFSIQL
PPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGHNTLWVPGTDHAGIATQIVVERQLDAQ
GVSRHDLGREKFVERVWEWKERSGSTITGQVRRIGASPDWSREYFTMNDKMSEAVREV
FVRLYEQGLIYRGKRLVNWDPVLLTAVSDLEVVSEEENGHLWHIRYPLADGSGHLSVA
TTRPETMLGDVAVMVHPEDERYRHLVGRHVKLPLCEREIPIIADDYVDREFGTGVVKV
TPAHDFNDYQVGLRHALAPIEILTLDAKINDNAPAAYRGLDRFDARKAIVDELDAQGL
LESVKPHKLMVPRGDRTGVVIEPMLTDQWFVAMTKPAPQGTFHPGKSITEVSLEVVRR
GEIKFVPENWTTTYYQWLENIQDWCISRQLWWGHQIPAWYGENGEIFVARNEEDARAQ
AAAKGYTGALKRDDDVLDTWFSSALVPFSSLGWPNETPEMKHFLPSSVLVTGFDIIFF
WVARMVMMTTHFTGKVPFGTVYVHGLVRDAEGQKMSKSKGNTLDPIDIVDGIGLDALV
AKRTTGLMNPRQAATIEKKTRKEFPDGIPAFGTDALRFTMASMATLGRNVNFDLARCE
GYRNFCNKLWNATRFVLMNCEGHDCGFDKPEVCGAGDCGPGGYLDFSPADRWIVSLMQ
RVEADIAKGFADYRFDNIANAIYKFVWDEYCDWYLELAKVQIQNGTSEQQRATRRTLL
RVLETVLRLAHPIIPFITEALWQKVAPLAGRYPAGKAEGEASLMVQAYPVAEPKKLDE
ACEQWAAELKAVVDACRNLRGEMNLSPATKVPLLAAGDAAQLQAFAPYVQALARLSEV
RVLPDEAALDADAHGAPIAIVGGNKLVLKVEIDVAAERERLSKEIARLEGEIVKCNAK
LGNEAFVAKAPPAVVAQEQKRLAEFQSTLTKLGAQLARLPA"
misc_feature 440170..443031
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="valyl-tRNA synthetase; Reviewed; Region: valS;
PRK05729"
/db_xref="CDD:180225"
misc_feature 440278..>440748
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="catalytic core domain of valyl-tRNA synthetases;
Region: ValRS_core; cd00817"
/db_xref="CDD:185677"
misc_feature 440326..440337
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="HIGH motif; other site"
/db_xref="CDD:185677"
misc_feature 440776..441153
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="Leucyl-tRNA synthetase, Domain 2; Region:
tRNA-synt_1_2; pfam13603"
/db_xref="CDD:205781"
misc_feature <441208..442020
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="catalytic core domain of valyl-tRNA synthetases;
Region: ValRS_core; cd00817"
/db_xref="CDD:185677"
misc_feature order(441574..441576,441583..441585,441667..441672,
441676..441681,441691..441693,441760..441771,
441793..441795)
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="active site"
/db_xref="CDD:185677"
misc_feature 441790..441804
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="KMSKS motif; other site"
/db_xref="CDD:185677"
misc_feature 442018..442458
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="Anticodon-binding domain of valyl tRNA synthetases;
Region: Anticodon_Ia_Val; cd07962"
/db_xref="CDD:153416"
misc_feature order(442021..442023,442027..442032,442039..442041,
442045..442050,442057..442062,442069..442074,
442078..442083,442261..442263,442270..442272,
442291..442293,442315..442320,442327..442329)
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153416"
misc_feature order(442060..442062,442069..442074,442078..442083,
442303..442305,442315..442320,442327..442329)
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="anticodon binding site; other site"
/db_xref="CDD:153416"
misc_feature 442831..443025
/gene="valS"
/locus_tag="BMA10229_A0422"
/note="Valyl tRNA synthetase tRNA binding arm; Region:
Val_tRNA-synt_C; pfam10458"
/db_xref="CDD:151031"
gene 443121..444002
/gene="galU-1"
/locus_tag="BMA10229_A0423"
/db_xref="GeneID:4792590"
CDS 443121..444002
/gene="galU-1"
/locus_tag="BMA10229_A0423"
/EC_number="2.7.7.9"
/note="identified by match to protein family HMM PF00483;
match to protein family HMM TIGR01099"
/codon_start=1
/transl_table=11
/product="UTP-glucose-1-phosphate uridylyltransferase"
/protein_id="YP_001026422.1"
/db_xref="GI:124383577"
/db_xref="GeneID:4792590"
/translation="MLKVTKAVFPVAGLGTRFLPATKASPKEMLPVVDKPLIQYAVEE
AIAAGITEMIFVTGRSKRAIEDHFDKSYEIEAELEARGKEKLLDLVRSIKPSHVDCFY
VRQPEALGLGHAVLCAEKLVADNPFAVILADDLLDGDPPVMKQMVDVFDHYHSSVIGV
EEIPPEDTKSYGIVDGKEWEDSIIKMSAIVEKPAPEVAPSNLGVVGRYVLKPRIFDHL
RALKPGAGGELQLTDAIQALLADEQVLAYKYRGTRFDCGSKLGYLKATVEFALRHPEV
KTEFETYLRSRSETQHG"
misc_feature 443133..443936
/gene="galU-1"
/locus_tag="BMA10229_A0423"
/note="Prokaryotic UGPase catalyses the synthesis of
UDP-glucose; Region: UGPase_prokaryotic; cd02541"
/db_xref="CDD:133021"
misc_feature 443136..443915
/gene="galU-1"
/locus_tag="BMA10229_A0423"
/note="dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane]; Region: RfbA; COG1209"
/db_xref="CDD:31402"
misc_feature order(443148..443159,443199..443204,443433..443435,
443442..443453,443511..443513,443517..443522,
443631..443636,443691..443696,443730..443732,
443814..443816)
/gene="galU-1"
/locus_tag="BMA10229_A0423"
/note="active site"
/db_xref="CDD:133021"
misc_feature order(443160..443162,443169..443183,443187..443195,
443205..443213,443217..443225,443235..443237,
443307..443309,443313..443321,443325..443327,
443337..443342,443427..443432,443436..443438,
443442..443444,443628..443630,443802..443804,
443874..443876,443892..443900,443904..443912,
443916..443924,443931..443936)
/gene="galU-1"
/locus_tag="BMA10229_A0423"
/note="tetramer interface; other site"
/db_xref="CDD:133021"
gene complement(444063..444680)
/locus_tag="BMA10229_A0424"
/db_xref="GeneID:4793937"
CDS complement(444063..444680)
/locus_tag="BMA10229_A0424"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_001026423.1"
/db_xref="GI:124386311"
/db_xref="GeneID:4793937"
/translation="MKVLWTGAALAAALLSGCASVTTGVSASAAPGALAGARTYDFAR
TATQAGNADYRRVETLVRGELAQRGFEEAAGTQARYRVTIAYATQPASVALTMPGCGG
AQQPACVAVDGPAPFGLPFAGTVYRHVLTLRFIERSSGGDAYRVSAAVQDRHPDALLA
APVLVRSALARVPFADGGGWLVETKKRDADDAMPGVVSVKPARSN"
misc_feature complement(444159..444569)
/locus_tag="BMA10229_A0424"
/note="Domain of unknown function (DUF4136); Region:
DUF4136; pfam13590"
/db_xref="CDD:205768"
gene complement(444769..447162)
/locus_tag="BMA10229_A0425"
/db_xref="GeneID:4791802"
CDS complement(444769..447162)
/locus_tag="BMA10229_A0425"
/note="identified by match to protein family HMM PF00512;
match to protein family HMM PF02518; match to protein
family HMM PF05226"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="YP_001026424.1"
/db_xref="GI:124385592"
/db_xref="GeneID:4791802"
/translation="MRFDRTQRRRLLGRRFLVEWIAIGCLGVAVILAGVAGRMTASVD
RIIYDRLLTLRKLPIESNIVIVEIDNRSLDTLGRWPWQRSVHAEFLGALAKTHPAAVV
YDVLFTEPSADDRALAKVLDLVPTFLPVLLSPEEPDGTRTVNPPVPVLAQHVAGAGHI
NLEVDPDGIVRSVALFESDGLHRWPQLMVPVFHALENGQFKLAQPAPIARRAHDIAQD
DNGESRYFVPFSRASQNYPAISFVDVLAGRVNADELRGKIVIVGATASGLYDRFATPI
SGEFGPLPGVYIHASVLDTLMTGRAISPVSGWLVFSASLLPLVVLLAGFLMLSPWRSL
LLTLSLAALAVASSAALLYEARLWLSPAPAIFGLIAAYPIWNWRRLEMTMSYLRYELQ
RLADEPHLLPEAPRERNEFGGDVLERQMALMAQAAQRVQDMKRFVWDSLDSMPEPVVV
TDLAGTVLIANHAAKRYCARLDAPAPEGRPLRVAFGELSFVKTVDGNAEQDVAIRTHW
PAALDPTRDYENDVMERGIEVRDRSGLDHLLRYAPCTNAQGNVTGWIAGLVDVTALHA
AERQREEALHLLSHDMRSPQSSILALVEIERQRAESEHTRGLLARIERYAQRALMLAD
EFVQLARAESQTYQLEAVSFADLLIDASDEVWPQAQAKRIRIDTSFGDEPCWIGADRS
LMTRALVNLLNNAVKYSPTDTVITCTLSVEPGAKRMHCTIRDQGYGISLEDQRHLFER
FKRFHANERPEVAGSGLGMAFVKTVVVRHGGCIGVDSTPGIGTAITVSLPLLDEPAA"
misc_feature complement(446239..447108)
/locus_tag="BMA10229_A0425"
/note="Predicted transmembrane sensor domain [Signal
transduction mechanisms]; Region: COG4252"
/db_xref="CDD:33975"
misc_feature complement(446239..447096)
/locus_tag="BMA10229_A0425"
/note="CHASE2 domain; Region: CHASE2; pfam05226"
/db_xref="CDD:203214"
misc_feature complement(444796..445848)
/locus_tag="BMA10229_A0425"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature complement(445270..445461)
/locus_tag="BMA10229_A0425"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(445285..445287,445297..445299,
445306..445308,445318..445320,445327..445329,
445339..445341,445387..445389,445396..445398,
445408..445410,445417..445419,445429..445431,
445441..445443))
/locus_tag="BMA10229_A0425"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(445423..445425)
/locus_tag="BMA10229_A0425"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(444796..445107)
/locus_tag="BMA10229_A0425"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(444808..444810,444814..444819,
444832..444834,444838..444840,444886..444897,
444976..444981,444985..444987,444991..444993,
444997..444999,445072..445074,445081..445083,
445093..445095))
/locus_tag="BMA10229_A0425"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(445081..445083)
/locus_tag="BMA10229_A0425"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(444889..444891,444895..444897,
444979..444981,444985..444987))
/locus_tag="BMA10229_A0425"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(447173..448519)
/locus_tag="BMA10229_A0426"
/db_xref="GeneID:4792527"
CDS complement(447173..448519)
/locus_tag="BMA10229_A0426"
/note="identified by match to protein family HMM PF01476"
/codon_start=1
/transl_table=11
/product="LysM domain-containing protein"
/protein_id="YP_001026425.1"
/db_xref="GI:124385502"
/db_xref="GeneID:4792527"
/translation="MTKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTL
YDVSARYLQGTDDWPLVAQLNDVPVPKHLQPGVVLKLPAARLRKERLSARVIAAHGTV
ESAGRGSAQFAPVAVDATLTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRR
TVLTGTLERVIDLRRGSVDSEVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRA
STTVEVLDGTVGVAPSAKRSADTLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQ
DDPQVAFDLVPLGGAQSYHVQIARDAGLYDLFKEVQVSAPRATFADVPDGTYFVRIAA
IDSHGLEGQPRIYAFERRRFGVDASAAPADGGYAFRWSTTQDGAAAGATRFRFVLSRS
KDLSNPIVDQVDAQGGRIAVSNLTPGDYYWSVIAERYEGGRFHEKASAVNAFTIAR"
misc_feature complement(447398..448420)
/locus_tag="BMA10229_A0426"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4254"
/db_xref="CDD:226705"
misc_feature complement(448277..448414)
/locus_tag="BMA10229_A0426"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(447833..448147)
/locus_tag="BMA10229_A0426"
/note="FecR protein; Region: FecR; pfam04773"
/db_xref="CDD:218257"
gene complement(448534..449238)
/locus_tag="BMA10229_A0427"
/db_xref="GeneID:4792615"
CDS complement(448534..449238)
/locus_tag="BMA10229_A0427"
/note="identified by match to protein family HMM PF00072;
match to protein family HMM PF00486"
/codon_start=1
/transl_table=11
/product="DNA-binding response regulator"
/protein_id="YP_001026426.1"
/db_xref="GI:124384755"
/db_xref="GeneID:4792615"
/translation="MRIAVLDDDQAQTDFVSQTLTAAGHTCYAFKEGKALKKRLQRET
FDLLVLDWNVPDMSGEEVLKWVRANQVEHRLPIIFMTSRDDEAGITQILNAGADDYVV
KPVSGPILRARIGSLLRRAYPVNAESSIREFDNYKFDANLKQAYVGDKPVSLTQKEFE
LALLLFQHLDRPLSRAHILDLVWKQATDIPSRTMDTHISMLRTKLGLRPENGYRLAPI
YGYGYRLERVMQGDAE"
misc_feature complement(448561..449238)
/locus_tag="BMA10229_A0427"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature complement(448885..449226)
/locus_tag="BMA10229_A0427"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(448927..448932,448939..448941,
448996..448998,449062..449064,449086..449088,
449215..449220))
/locus_tag="BMA10229_A0427"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(449086..449088)
/locus_tag="BMA10229_A0427"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(449062..449070,449074..449079))
/locus_tag="BMA10229_A0427"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(448924..448932)
/locus_tag="BMA10229_A0427"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature complement(448564..448848)
/locus_tag="BMA10229_A0427"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature complement(order(448573..448575,448588..448590,
448624..448629,448651..448653,448660..448662,
448714..448719,448774..448776))
/locus_tag="BMA10229_A0427"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene complement(449566..449952)
/locus_tag="BMA10229_A0428"
/db_xref="GeneID:4793339"
CDS complement(449566..449952)
/locus_tag="BMA10229_A0428"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026427.1"
/db_xref="GI:124385887"
/db_xref="GeneID:4793339"
/translation="MLFRSGTIRIPFEPNDKARERERPIQRVELDPEHDRHARAALEA
YADSSAHEMPWLAEWMREALGSPQPELTRCAQTVERVFDLAHAWAAGQPDYAGAAWEH
VRGRLLEALQHAPRAIAPDALETDPA"
gene complement(450228..450458)
/locus_tag="BMA10229_A0429"
/db_xref="GeneID:4792101"
CDS complement(450228..450458)
/locus_tag="BMA10229_A0429"
/note="identified by match to protein family HMM PF01206"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026428.1"
/db_xref="GI:124385175"
/db_xref="GeneID:4792101"
/translation="MLIHKEVDARGLNCPLPILRAKKALADMESGQILKVLATDPGSQ
RDFAAFAKQTGNEIVESSTTQDKTFVFLMRRR"
misc_feature complement(450234..450443)
/locus_tag="BMA10229_A0429"
/note="SirA, YedF, and YeeD. Two-layered alpha/beta
sandwich domain. SirA (also known as UvrY, and YhhP)
belongs to a family of bacterial two-component response
regulators that controls secondary metabolism and
virulence. The other member of this...; Region:
SirA_YedF_YeeD; cd00291"
/db_xref="CDD:238180"
misc_feature complement(order(450402..450404,450408..450419,
450426..450428,450435..450440))
/locus_tag="BMA10229_A0429"
/note="CPxP motif; other site"
/db_xref="CDD:238180"
gene complement(450623..451660)
/locus_tag="BMA10229_A0430"
/db_xref="GeneID:4792855"
CDS complement(450623..451660)
/locus_tag="BMA10229_A0430"
/note="identified by match to protein family HMM PF01408;
match to protein family HMM PF02894; match to protein
family HMM PF03447"
/codon_start=1
/transl_table=11
/product="myo-inositol dehydrogenase"
/protein_id="YP_001026429.1"
/db_xref="GI:124383648"
/db_xref="GeneID:4792855"
/translation="MIVSHSAAAVRIGIAGLGRLGRRHAENLARRVAGARLAAACSPL
ADECAWARETLAVPRVYEDFDALAADPELDALWLVTPSALHADQIVAALRAGKHVFCE
KPLSLDLGECERVLAEARARPHLVATIGFMRRFDPSYRDAYARVAAGEIGRPFLVRSQ
TCDRNDPEGFFVRFVPSSGGIFLDCTVHDIDVARWLLGAPRATRVYAAGAVALHEGLR
ACGDVDNGVAICEFEGGRLAMFYASRTMAHGNDTHSEVIGTAGALAIGRNPRANRVEI
YDAAGIRNTCTPTFFDRFEDAFLIEAQAFVAAVRGEGAAGGATLADALEATRIGHALR
ESLQTGRAIEL"
misc_feature complement(<450866..451540)
/locus_tag="BMA10229_A0430"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:31017"
misc_feature complement(451268..>451426)
/locus_tag="BMA10229_A0430"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
misc_feature complement(450890..451225)
/locus_tag="BMA10229_A0430"
/note="Oxidoreductase family, C-terminal alpha/beta
domain; Region: GFO_IDH_MocA_C; pfam02894"
/db_xref="CDD:202453"
gene complement(451673..452692)
/locus_tag="BMA10229_A0431"
/db_xref="GeneID:4794008"
CDS complement(451673..452692)
/locus_tag="BMA10229_A0431"
/note="identified by match to protein family HMM PF01408;
match to protein family HMM PF02894"
/codon_start=1
/transl_table=11
/product="myo-inositol dehydrogenase"
/protein_id="YP_001026430.1"
/db_xref="GI:124386300"
/db_xref="GeneID:4794008"
/translation="MTNAAPTIDVAVFGAGRIGRIHAGNLARRPGVRLKYVVDVNRDA
AAALAAQYGAQAADVDGALGDASIGASVICSSTDTHAELIVGAARAGKHVFCEKPVDL
TLERARACEAAVARAGVVCMIGFQRRFDPTFEALKRRIDAGEIGTPEMLVVTSRDPGA
PPVDYIKHSGGIFKDMLIHDFDIFRWILDDDADTLHATGSCLTDPAIAGAGDIDSAAV
TIRTKRGRLCQINTSRRAAYGYDQRFEVLGSAGMLQAGNVRPTEVTGYSARAVSTDLP
EAFFLERYRAAYAREIAHFFAAVTSGEPVRTTVADGVKALELAEAATLSWREARAVTL
GERAA"
misc_feature complement(452381..452665)
/locus_tag="BMA10229_A0431"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
misc_feature complement(451685..452506)
/locus_tag="BMA10229_A0431"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:223745"
misc_feature complement(451964..452284)
/locus_tag="BMA10229_A0431"
/note="Oxidoreductase family, C-terminal alpha/beta
domain; Region: GFO_IDH_MocA_C; pfam02894"
/db_xref="CDD:217272"
gene complement(452685..453566)
/locus_tag="BMA10229_A0432"
/db_xref="GeneID:4791791"
CDS complement(452685..453566)
/locus_tag="BMA10229_A0432"
/note="identified by match to protein family HMM PF01380"
/codon_start=1
/transl_table=11
/product="RpiR family transcriptional regulator"
/protein_id="YP_001026431.1"
/db_xref="GI:124385575"
/db_xref="GeneID:4791791"
/translation="MDDTTPPETPAVDDLLQRIAGAYDTLPRQLKRIASYIDEHRSSV
MMDRTSDIAQRCGVHPSAVVRFAQRFGFSGFSDLQAVFKDAYTGQNPTVQSYQQRIRS
LIDGEAGPMTGGAVARQFIDASRAGLDELAAGLDDDQFDAAVTMLERAENIYVVGVRR
SFPVASYIVYALQHTAKRVHLVSGLGGMYREQIRSVKKGDVVIAISFAPYGKETQYCL
RAARHNHAQTLVVTDSRLSPLARDASAHLLVKEGSAFAFRSLTSTICLCQALFIALAY
RLELNVEEVKDIGGYDD"
misc_feature complement(452730..453533)
/locus_tag="BMA10229_A0432"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:224651"
misc_feature complement(453309..453524)
/locus_tag="BMA10229_A0432"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature complement(452748..453152)
/locus_tag="BMA10229_A0432"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:240144"
misc_feature complement(order(452949..452951,453084..453086))
/locus_tag="BMA10229_A0432"
/note="putative active site [active]"
/db_xref="CDD:240144"
gene 453811..454860
/locus_tag="BMA10229_A0433"
/db_xref="GeneID:4792510"
CDS 453811..454860
/locus_tag="BMA10229_A0433"
/codon_start=1
/transl_table=11
/product="carbohydrate ABC transporter periplasmic
sugar-binding protein"
/protein_id="YP_001026432.1"
/db_xref="GI:124384522"
/db_xref="GeneID:4792510"
/translation="MRLCTGKAVLRACVAAIAVAAGVGGAAPAAQAAGARFALVSHAP
DSDSWWNTIKNAIKQADEDFDVTTDYRNPPNGDIADMARLIEQSAARDYDGVITTIAD
YDVLKNSLKKVTAKKIPLVTINSGTEEQSAQLGAIMHVGQPEYVAGHAAGEKAKAAGV
KRFLCVNHIATNSVSFDRCRGFADAIGADYKSSTIDSGQDPTEIQSKVSAYLRNHPNT
QAILTLGPVPAAASLKAVQQMGLANKLFFATFDFSDDIAKAIQSGAIKFAIDQQPYLQ
GYIPVAVLAIAKQNKTTDPAKIRQILEANPKFQARLSTYGLQPSYGPKNIRSGPGFIT
KENLEKVIKYAGQYR"
misc_feature 453916..454809
/locus_tag="BMA10229_A0433"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_4; cd06312"
/db_xref="CDD:107307"
misc_feature 453919..454686
/locus_tag="BMA10229_A0433"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:222108"
misc_feature order(453955..453957,454180..454182,454342..454344,
454561..454563,454621..454623)
/locus_tag="BMA10229_A0433"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107307"
gene 454961..456106
/locus_tag="BMA10229_A0434"
/db_xref="GeneID:4793466"
CDS 454961..456106
/locus_tag="BMA10229_A0434"
/note="identified by match to protein family HMM PF02653"
/codon_start=1
/transl_table=11
/product="carbohydrate ABC transporter permease"
/protein_id="YP_001026433.1"
/db_xref="GI:124386189"
/db_xref="GeneID:4793466"
/translation="MGVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAI
SGAVLVFAVFAFGAGGSGMFNLDGIMNWSQVAAYLGILAVGACLLMVAGEFDLSIGSM
IGFAGMMVAIPTVYFHWPIWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFI
LRGLTLALSIMFADRTIVSGLGDYAHADPVVHFLFQGVAFHELFRSLAHAGVGRLLDN
GEPLVPGVPKVLLWWLAVTAVGAFVLAKTRYGNWILAAGGDAHAAKNVGVPVRRVKIS
LFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGTLLTGGYGSVIGAAF
GALIFGVVQIGITYTNISSDWFRVFLGVMLLVAVLFNHYVRRRVSQS"
misc_feature 455162..456064
/locus_tag="BMA10229_A0434"
/note="Branched-chain amino acid transport system /
permease component; Region: BPD_transp_2; pfam02653"
/db_xref="CDD:217165"
misc_feature 455186..456073
/locus_tag="BMA10229_A0434"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 455741..455797
/locus_tag="BMA10229_A0434"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 456119..456919
/locus_tag="BMA10229_A0435"
/db_xref="GeneID:4791861"
CDS 456119..456919
/locus_tag="BMA10229_A0435"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="carbohydrate ABC transporter ATP-binding
protein"
/protein_id="YP_001026434.1"
/db_xref="GI:124385247"
/db_xref="GeneID:4791861"
/translation="MSTPASHDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGD
NGAGKSTLIKTLAGVHPPSDGQYLVDGKPVLFDSPKDALDLGIATVYQDLALVPLLSV
ARNFFMGREPQKKLFGLFNVMDLDSSARIARAKLAEMGINVRDAHQPIGTMSGGERQC
LAIARAIHFGARVLILDEPTAALGVKQSLNVLKLIHAARAKGISVIFITHNVHHAYPI
GDSFTLLNRGRSLGTFTKDTISKNEVLDMMAGGAEMQKMIAELDGATI"
misc_feature 456140..456853
/locus_tag="BMA10229_A0435"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivF; COG0410"
/db_xref="CDD:223487"
misc_feature 456149..456817
/locus_tag="BMA10229_A0435"
/note="First domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:213183"
misc_feature 456245..456268
/locus_tag="BMA10229_A0435"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213183"
misc_feature order(456254..456259,456263..456271,456392..456394,
456647..456652,456746..456748)
/locus_tag="BMA10229_A0435"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213183"
misc_feature 456383..456394
/locus_tag="BMA10229_A0435"
/note="Q-loop/lid; other site"
/db_xref="CDD:213183"
misc_feature order(456416..456427,456587..456604)
/locus_tag="BMA10229_A0435"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213183"
misc_feature 456635..456652
/locus_tag="BMA10229_A0435"
/note="Walker B; other site"
/db_xref="CDD:213183"
misc_feature 456659..456670
/locus_tag="BMA10229_A0435"
/note="D-loop; other site"
/db_xref="CDD:213183"
misc_feature 456734..456754
/locus_tag="BMA10229_A0435"
/note="H-loop/switch region; other site"
/db_xref="CDD:213183"
gene 456933..458933
/locus_tag="BMA10229_A0436"
/db_xref="GeneID:4792746"
CDS 456933..458933
/locus_tag="BMA10229_A0436"
/note="identified by match to protein family HMM PF00294"
/codon_start=1
/transl_table=11
/product="iolC protein"
/protein_id="YP_001026435.1"
/db_xref="GI:124384293"
/db_xref="GeneID:4792746"
/translation="MTSPTLSFAQNRPLDVICVGRVAVDLYAQQIGARLEDASSFAKY
LGGSSGNIAFGCARLGLKSAMLSRVGHDHMGRFVRETLAREGCDTSRLRTDTERLTAL
VLLGLKDRDTFPLIFHRENCADMALDEDDFDEAFIASSKALLITGTHFSTEQVMRASR
RALDYARRNQVRTVLDIDYRPVLWGLTGKADGETRFIANEGVTAHLQRILPLFDVVIG
TEEEFRIAGGKDALLDALAMVRAVTSAALVVKRGPLGCSIVDGDVPATLDALPVIRGV
EVDVMNVLGAGDAFASGFLSQWLRGRPFADAARAANACGALVVSRHGCSPAMPTPAEL
AYFLAEAKRDPARMRRPDLDATLARLHRVTPARTPRDEVLGFAFDHRNQFFELARQTG
ASVARIDALKRLFVEAVAQTEAQLGLAGRIGVLIDDRYGQDALNDATGRGWWVGRPVE
LPGSLPLEFDHGRSIGTTLASWPLEHVAKCLVQYHPDEAAEPRIEQETQLRALYDAVQ
ASGHELLLEVIPPRRADLPQAADTVYRALKRLYNLGIHPEWWKLAPLDAAQWQAIDAL
IAERDPYCRGVVLLGLSAGVDELVGGFGAAAASATCRGFTVGRTIFHEPSRAWLAGEI
DDAELIARVRRTFETLIGAWRAARTDARARGRHAGAAPRVAA"
misc_feature 456975..457958
/locus_tag="BMA10229_A0436"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature 456975..457907
/locus_tag="BMA10229_A0436"
/note="2-keto-3-deoxygluconate kinase (KdgK)
phosphorylates 2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the...;
Region: KdgK; cd01166"
/db_xref="CDD:29350"
misc_feature order(457071..457076,457083..457085,457239..457241,
457281..457283,457287..457289,457374..457376,
457470..457472,457785..457787,457794..457796,
457902..457904)
/locus_tag="BMA10229_A0436"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29350"
misc_feature order(457680..457682,457695..457697,457740..457742,
457785..457793,457800..457802,457866..457868,
457878..457880)
/locus_tag="BMA10229_A0436"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29350"
misc_feature 457929..458855
/locus_tag="BMA10229_A0436"
/note="Uncharacterized protein conserved in bacteria
(DUF2090); Region: DUF2090; pfam09863"
/db_xref="CDD:150524"
gene 458989..460929
/locus_tag="BMA10229_A0437"
/db_xref="GeneID:4793699"
CDS 458989..460929
/locus_tag="BMA10229_A0437"
/note="identified by match to protein family HMM PF00205;
match to protein family HMM PF02775; match to protein
family HMM PF02776"
/codon_start=1
/transl_table=11
/product="iolD protein"
/protein_id="YP_001026436.1"
/db_xref="GI:124383379"
/db_xref="GeneID:4793699"
/translation="MNDFIDDPAASVQRTVRLTAAQALVRYLAAQRVATGDGDAPLFG
GVFAIFGHGNVAGLGEALHQYRDALPTYRAHNEQAMAHSAIAYAKAHLRRRMMAVTTS
IGPGATNLVTAAALAHVNRLPVLLLPGDVFVSRAPDPVLQQIEDFHDGAISANDAFKA
VSRYFDRIVHPAQLLTALPRALRVLTDAALCGPVTLALPQDVQTMAYDYPAEFFAPRA
VTFHAPAPVEAELDAALAPLRASARPFIVAGGGALYSEGGAAALAAFAERHGIPVGET
QAGKSALPWDHPLNAGAIGVTGSPAANALAHDADCVIAVGTRLQDFTTGSNTLFARAR
VIGINANAFDALKHRATIVQADARLALEALGARLEGWRADAAWTARAHARANAWRDAV
AAVTHAPPRARALPYDADVIGAVQRSAPDSAARDIAVCAAGTLPAELHKLWRAAAPGG
YHVEYGYSCMGYEIAGGLGAKLAKPEREVIVMVGDGSYLMMNSEIATSVMLGAKLIVV
VLDNRGYGCINRLQQACGGAPFNNLFDDCVQGPLGAPRIDFAAHARALGARAEHVADI
AALEAAMARARASDRTYVICIDTDPARTTPDGGWWWEVAVPEVSPRDAVRDARADYER
HLAARAGAPASRSTPSTPESST"
misc_feature 459025..460866
/locus_tag="BMA10229_A0437"
/note="Acetolactate synthase [Amino acid transport and
metabolism]; Region: COG3962"
/db_xref="CDD:33743"
misc_feature 459052..459588
/locus_tag="BMA10229_A0437"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature order(459091..459093,459136..459141,459151..459153,
459163..459165,459196..459216,459223..459225,
459232..459237,459244..459249,459253..459261,
459301..459303,459322..459324,459334..459336,
459343..459348)
/locus_tag="BMA10229_A0437"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(459136..459144,459151..459153,459163..459165,
459199..459201,459205..459216,459220..459222,
459301..459303,459310..459315,459319..459324,
459331..459333,459457..459459,459466..459468)
/locus_tag="BMA10229_A0437"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(459136..459138,459217..459219,459301..459303,
459313..459315)
/locus_tag="BMA10229_A0437"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature <459787..460047
/locus_tag="BMA10229_A0437"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:201080"
misc_feature 460210..460821
/locus_tag="BMA10229_A0437"
/note="Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and...; Region:
TPP_enzymes; cl01629"
/db_xref="CDD:207466"
misc_feature order(460366..460368,460438..460449,460522..460524,
460528..460530)
/locus_tag="BMA10229_A0437"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48162"
gene 460926..461846
/locus_tag="BMA10229_A0438"
/db_xref="GeneID:4791302"
CDS 460926..461846
/locus_tag="BMA10229_A0438"
/note="identified by match to protein family HMM PF01261"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026437.1"
/db_xref="GI:124383641"
/db_xref="GeneID:4791302"
/translation="MSAPDIRIGINPLSWMNDDLPSLGGETPLAVALTEGREIGYEGF
ELGNKFPREPQALKALLAQYDLSLVSGWYSGRLAERGVQEEIDAVGPHLELLAKNGAT
VMVYGEVAGTIQGSPAPLYQRPRFVDDAQWDAYAERVDAFARYTRAQGVRLGYHHHMG
AYVESPADVDRLMASTSDAVGLLFDAGHMTFGGGDPVAELAKHIGRVCHVHCKDVRPA
VIRLARNRNWSFLDAVIAGAFTVPGDGSIDFPTIVDMLKRHGYRGWLVVEAEQDPAVA
PSYAYAQKGYRTLRALVDAPLPPVGHKEAA"
misc_feature 460947..461801
/locus_tag="BMA10229_A0438"
/note="Sugar phosphate isomerases/epimerases [Carbohydrate
transport and metabolism]; Region: IolE; COG1082"
/db_xref="CDD:224007"
gene 461846..462649
/locus_tag="BMA10229_A0439"
/db_xref="GeneID:4794001"
CDS 461846..462649
/locus_tag="BMA10229_A0439"
/note="identified by match to protein family HMM PF06845"
/codon_start=1
/transl_table=11
/product="iolB protein"
/protein_id="YP_001026438.1"
/db_xref="GI:124384582"
/db_xref="GeneID:4794001"
/translation="MSLLVKGAGDGMSIARVTPESAHWKHVGFAAYRLKAGEAIALAE
AAREMCIVVLTGTVDIEAGDGTCWTALGSRDSVFDGVAPYALYLPPKLSVIVRASRDA
ELGVASAPAAGRYPARLIKPSQMRRSVRGSGANTRYVCDILPQTEPAEALLVVEVRTP
SGHSSSYPPHKHDTDNVPVESSLEETYYHRVHPPQGFVFQRVYTDSRDLDESMAAGDH
DVVLVPRGYHPVVVPYGYESYYLNVMAGPTRVWHFKNDPAHEWMLNGGR"
misc_feature 461852..462631
/locus_tag="BMA10229_A0439"
/note="KduI/IolB family; Region: KduI; pfam04962"
/db_xref="CDD:218352"
gene complement(462766..463470)
/locus_tag="BMA10229_A0440"
/db_xref="GeneID:4793526"
CDS complement(462766..463470)
/locus_tag="BMA10229_A0440"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid ABC transporter
ATP-binding protein"
/protein_id="YP_001026439.1"
/db_xref="GI:124385506"
/db_xref="GeneID:4793526"
/translation="MSALLELRGVRAGYGALPVLDGVDLRIAAGEAVALVGRNGSGRS
TLAKAIMGMVRVEGTVRIGGVDVAGAPTFAIARHRVGYVDEHRDVFALLSVEDNLRLG
LRGASGAAARAALADARERYPMLAERWRTKAGVLSGGEQQMLALACALIGAPRVLIVD
EPAEGLAPLAVEQVRACLAGAKAQGVALLLIEQRMQLAPALTSRVAVMGRGRIVYDGA
AKALDAGIVERWLSVG"
misc_feature complement(462772..463464)
/locus_tag="BMA10229_A0440"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivF; COG0410"
/db_xref="CDD:30759"
misc_feature complement(462799..463458)
/locus_tag="BMA10229_A0440"
/note="LivF (TM1139) is part of the LIV-I bacterial
ABC-type two-component transport system that imports
neutral, branched-chain amino acids. The E. coli
branched-chain amino acid transporter comprises a
heterodimer of ABC transporters (LivF and LivG), a...;
Region: ABC_TM1139_LivF_branched; cd03224"
/db_xref="CDD:72983"
misc_feature complement(463339..463362)
/locus_tag="BMA10229_A0440"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72983"
misc_feature complement(order(462892..462894,462988..462993,
463216..463218,463336..463344,463348..463353))
/locus_tag="BMA10229_A0440"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72983"
misc_feature complement(463216..463227)
/locus_tag="BMA10229_A0440"
/note="Q-loop/lid; other site"
/db_xref="CDD:72983"
misc_feature complement(463036..463065)
/locus_tag="BMA10229_A0440"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72983"
misc_feature complement(462988..463005)
/locus_tag="BMA10229_A0440"
/note="Walker B; other site"
/db_xref="CDD:72983"
misc_feature complement(462970..462981)
/locus_tag="BMA10229_A0440"
/note="D-loop; other site"
/db_xref="CDD:72983"
misc_feature complement(462886..462906)
/locus_tag="BMA10229_A0440"
/note="H-loop/switch region; other site"
/db_xref="CDD:72983"
gene complement(463467..465716)
/locus_tag="BMA10229_A0441"
/db_xref="GeneID:4792619"
CDS complement(463467..465716)
/locus_tag="BMA10229_A0441"
/note="identified by match to protein family HMM PF00005;
match to protein family HMM PF02653"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid ABC transporter
permease/ATP binding protein"
/protein_id="YP_001026440.1"
/db_xref="GI:124386440"
/db_xref="GeneID:4792619"
/translation="MPEALAWLAFVALLVVPALAWPRGWMLGYLAQTAAMIVLALSYN
LLLGTTGLLSFGHAAFAGLGAFVAAHSFNRYGLPLPLVPLAGGAAGAAFGALFGFVAT
RRAGTAFAMITLGIGELVAAAAWSVPEWFGGAGGVSIDRAAGPALAGWEFGKPMHAYA
LIAAWCVVAAVAMRVLVRTRLARLANAVRDNPARVAALGTDPCRVRFAMAIAAAFFAG
VAGALTLIDVEVATAESVGMLRSGAVLFATVIGGTTAFFGPVVGAVLLTFFSVFVASV
SRAWLLYLGLLFVAVVLAAPGGASGRWRAWRDARRHGGARFDARRALPGAGAALAGGV
AIVFAAELAYALQFAQNDARRAVIGPWRFDAGAPLGWGIAALAAALGMGLAHAARRWG
RGAPRTNGPAFADAIDTCGAACGSAELKARDAGDVDGSTNAASAANETNAVSIASTTS
TTSMTSMTSATSATSATSARRAARVSDNAPSPVFEVAAEPVGGGVHAASAPPALRMAD
VSKSFGATPVLVGIDLTIRPGERHALIGPNGAGKSTLFNLIAGALAPTRGRIALNGIE
LGRRRPHAVARLGLARSFQQTSVFARMSVYDNLRCAALHAPRARRRWRREPAAAAAID
RAADAALASIGLAAHRDALAGSLSYAQQRALDVGLALASGASVFLFDEPTAGMSREQA
RRTIELIRRATAGKTVLMIEHDMDAVFGFADRVSVLVRGELVATGSPAAIRANAAVRA
AYFGEAFER"
misc_feature complement(464889..>465410)
/locus_tag="BMA10229_A0441"
/note="Transmembrane subunit (TM) of Escherichia coli LivM
and related proteins. LivM is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivM_like;
cd06581"
/db_xref="CDD:119323"
misc_feature complement(465084..465140)
/locus_tag="BMA10229_A0441"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119323"
misc_feature complement(463482..464219)
/locus_tag="BMA10229_A0441"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature complement(463530..464207)
/locus_tag="BMA10229_A0441"
/note="The Mj1267/LivG ABC transporter subfamily is
involved in the transport of the hydrophobic amino acids
leucine, isoleucine and valine. MJ1267 is a
branched-chain amino acid transporter with 29% similarity
to both the LivF and LivG components of the E; Region:
ABC_Mj1267_LivG_branched; cd03219"
/db_xref="CDD:72978"
misc_feature complement(464088..464111)
/locus_tag="BMA10229_A0441"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72978"
misc_feature complement(order(463608..463610,463701..463706,
463962..463964,464085..464093,464097..464102))
/locus_tag="BMA10229_A0441"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72978"
misc_feature complement(463962..463973)
/locus_tag="BMA10229_A0441"
/note="Q-loop/lid; other site"
/db_xref="CDD:72978"
misc_feature complement(463749..463778)
/locus_tag="BMA10229_A0441"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72978"
misc_feature complement(463701..463718)
/locus_tag="BMA10229_A0441"
/note="Walker B; other site"
/db_xref="CDD:72978"
misc_feature complement(463683..463694)
/locus_tag="BMA10229_A0441"
/note="D-loop; other site"
/db_xref="CDD:72978"
misc_feature complement(463602..463622)
/locus_tag="BMA10229_A0441"
/note="H-loop/switch region; other site"
/db_xref="CDD:72978"
gene complement(465745..466680)
/locus_tag="BMA10229_A0442"
/db_xref="GeneID:4791569"
CDS complement(465745..466680)
/locus_tag="BMA10229_A0442"
/note="identified by match to protein family HMM PF02653"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid ABC transporter
permease"
/protein_id="YP_001026441.1"
/db_xref="GI:124386437"
/db_xref="GeneID:4791569"
/translation="MQSVVLDLLNGLSYGLLLFMLCAGLTLIFGMLGVLNFAHASFYM
LGAYAGYAIAARTSFWVALVAAPLAVGALGALCERTLLRRVRASGHLDELLLTFGLAY
LIAEGVKLVWGLAPLAAPVPAALDGAAFTVYGAVFSRYRAFMMLVSIAMLGALWAVLR
ASRTGLVVRAALTRRAAVEALGHDVPRVMTLVFAAGTALAALAGVIGAPLAVIEPAMA
QTLGSVVFAVIVIGGLGSLAGALVASLVLGCAQTFAAASRASLSDAAQLAGIALPDAW
RALTLAQFAPLIPYLLLIVVLACRARGLFGERADV"
misc_feature complement(<466000..466611)
/locus_tag="BMA10229_A0442"
/note="Transmembrane subunit (TM) of Escherichia coli LivH
and related proteins. LivH is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivH_like;
cd06582"
/db_xref="CDD:119324"
misc_feature complement(466099..466155)
/locus_tag="BMA10229_A0442"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119324"
gene complement(466685..467134)
/locus_tag="BMA10229_A0443"
/db_xref="GeneID:4791566"
CDS complement(466685..467134)
/locus_tag="BMA10229_A0443"
/note="identified by match to protein family HMM PF03061"
/codon_start=1
/transl_table=11
/product="thioesterase"
/protein_id="YP_001026442.1"
/db_xref="GI:124385357"
/db_xref="GeneID:4791566"
/translation="MSSTKPVPLPRSAYRHFLPITTRWMDNDVYGHVNNVVYYSYFDT
VVNEYLIRRGALDVERGATIGLVVETQCNYFAPLVFPQRVEAGLRVARLGSSSVRYEI
GLFAHGEASAAAQGHFVHVYVDRATRRPVPLPEPLRAALAPLVAPAA"
misc_feature complement(466763..467089)
/locus_tag="BMA10229_A0443"
/note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes
the final step in the 4-chlorobenzoate degradation pathway
in which 4-chlorobenzoate is converted to
4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT
forms a homotetramer with four active sites; Region: 4HBT;
cd00586"
/db_xref="CDD:238329"
misc_feature complement(order(466844..466855,466934..466936,
466940..466942,467006..467008))
/locus_tag="BMA10229_A0443"
/note="active site"
/db_xref="CDD:238329"
gene complement(467035..467379)
/locus_tag="BMA10229_A0444"
/db_xref="GeneID:4792633"
CDS complement(467035..467379)
/locus_tag="BMA10229_A0444"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026443.1"
/db_xref="GI:124383778"
/db_xref="GeneID:4792633"
/translation="MTAARISSRMLAPMPARPLPRAFSRASARAMTPRAASPRGERAA
IAVIAACAPSAPSAACAAQPTGRSRRLTQPPFSRLAPTCPRPNPFRCRAAPIATSCRS
RRAGWTTTSTAT"
gene complement(467376..468524)
/locus_tag="BMA10229_A0445"
/db_xref="GeneID:4791201"
CDS complement(467376..468524)
/locus_tag="BMA10229_A0445"
/note="identified by match to protein family HMM PF00465"
/codon_start=1
/transl_table=11
/product="alcohol dehydrogenase"
/protein_id="YP_001026444.1"
/db_xref="GI:124386408"
/db_xref="GeneID:4791201"
/translation="MAYIYYLTHIHLGDDALAMLGAECARSGIARPLVVTDKGVAAAG
LVDRALEALGLGALPVFDDTPSNPTEAAVLAAAQRYRDEGCDGLVAVGGGSAIDLAKG
VAIAATHPAPLTRYATIEGGSERITAAAAPLIAVPTTSGTGSEVARGAILILADGRKL
GFHSWHLLPKAAICDPSLTLGLPPGLTAATGMDAIAHCIETFLAPAFNPPADGIALDG
LERAWAHIERATHDGGDRAARLAMMSASMQGAMAFQKGLGCVHSLSHPLGGVKVDGKT
SLHHGTLNAVVLPAVLRFNESAPSVVAERRYARMRRVMNLPERADLSQALHDMTARLG
LPTGLRQMGVDEQAFDHVIEGALADHCHKTNPRIASADDYRRMLVESL"
misc_feature complement(467379..468524)
/locus_tag="BMA10229_A0445"
/note="Alcohol dehydrogenase, class IV [Energy production
and conversion]; Region: EutG; COG1454"
/db_xref="CDD:224371"
misc_feature complement(467391..468509)
/locus_tag="BMA10229_A0445"
/note="Iron-containing alcohol dehydrogenases-like,
involved in the linear alkylbenzenesulfonate (LAS)
degradation pathway; Region: Fe-ADH7; cd08192"
/db_xref="CDD:173951"
misc_feature complement(order(467685..467687,467730..467732,
467742..467744,467934..467936,467946..467948,
467967..467969,467991..467993,468045..468050,
468102..468104,468108..468113,468222..468224,
468231..468233,468240..468248,468414..468416))
/locus_tag="BMA10229_A0445"
/note="putative active site [active]"
/db_xref="CDD:173951"
misc_feature complement(order(467685..467687,467742..467744,
467934..467936,467946..467948))
/locus_tag="BMA10229_A0445"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173951"
gene 468740..469075
/locus_tag="BMA10229_A0446"
/db_xref="GeneID:4791718"
CDS 468740..469075
/locus_tag="BMA10229_A0446"
/note="identified by match to protein family HMM PF01906"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026445.1"
/db_xref="GI:124386539"
/db_xref="GeneID:4791718"
/translation="MADPQLITTAFDIPGYRIERSLGVARGIVVRSRSIVGTFGASIQ
TLFGGNISLYTSLCERARQDAYERMIDEARRMGGNAIVGMRYDATEIASGVTEVLCYG
TAVQAVRAG"
misc_feature 468755..469054
/locus_tag="BMA10229_A0446"
/note="Putative heavy-metal-binding; Region: YbjQ_1;
cl00426"
/db_xref="CDD:241856"
gene complement(469175..469804)
/locus_tag="BMA10229_A0447"
/db_xref="GeneID:4791488"
CDS complement(469175..469804)
/locus_tag="BMA10229_A0447"
/EC_number="3.6.1.-"
/note="identified by match to protein family HMM PF00293"
/codon_start=1
/transl_table=11
/product="MutT/NUDIX NTP pyrophosphatase"
/protein_id="YP_001026446.1"
/db_xref="GI:124385776"
/db_xref="GeneID:4791488"
/translation="MRDHDPPNGRPAVAGAFGGSPYSPSTMTTADYRFCPRCARALAE
RADPVDEGGRLRRACPDATCGYVHWNNPVPVVAAIVEYEGRILLARNAAWPEGMFALI
TGFLEHGETPEAGIAREVREETSLEAESVTLVGVYEFIRKNELIIAYHVRASGTIRLS
PELLEYRLIEAPKLRPWRAGTGQAVADWMRARGLEFEFVDFPGAVANPG"
misc_feature complement(469274..469630)
/locus_tag="BMA10229_A0447"
/note="Nudix hydrolase is a superfamily of enzymes found
in all three kingdoms of life, and it catalyzes the
hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+...; Region:
Nudix_Hydrolase; cl00447"
/db_xref="CDD:212606"
misc_feature complement(order(469433..469459,469487..469495))
/locus_tag="BMA10229_A0447"
/note="nudix motif; other site"
/db_xref="CDD:72880"
gene 470018..470695
/locus_tag="BMA10229_A0448"
/db_xref="GeneID:4792351"
CDS 470018..470695
/locus_tag="BMA10229_A0448"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026447.1"
/db_xref="GI:124384436"
/db_xref="GeneID:4792351"
/translation="MTDRRSHHDDDLLSLIDELEAESRAIDARMSHLDALVSWHDSLI
FEAENLAKLQRSLADIREQSGQIPHAPHDVRRFRLGLLWMGAVAAYEGAMHELFVNTL
RVESLRAKALDRLRQLIRDGASPHRDIKTADAQSVTRWFTLTTIADPLVAAKRFDTLY
GIATITPDPAWCRRVLGIRNAFAHRNGIGVDIREEALHELIDRLDDLASEFHSAFLHE
AGKLTET"
gene complement(470768..472408)
/locus_tag="BMA10229_A0449"
/db_xref="GeneID:4793562"
CDS complement(470768..472408)
/locus_tag="BMA10229_A0449"
/note="identified by match to protein family HMM PF00089"
/codon_start=1
/transl_table=11
/product="serine protease MucD"
/protein_id="YP_001026448.1"
/db_xref="GI:124383922"
/db_xref="GeneID:4793562"
/translation="MLVGFACLQPTPLAAGTLQSPAKAKRIAQIGAAGPVDFPTLVER
YGPAVVSVSVPAQDPQMSASGLEALDPDDPFFAYFKSAATQPALSPENGPRAMAGAGS
GFIVGADGIILTTAYVVGQASEATVRLIDRREFKARVLAVDDSSDVAVLQIDATKLPT
VRLGDSSRVRTGEPVLTIGTPDGSANTVTTGIVSATARMLPDGGRFPFFQTDVTGNLD
NSGGPVFNRAGEVIGIDVQIYGSGERNPGVTFAIPIDMAMKVRAQVLQAQRQARQQAQ
PPMQQAQQAQQAPPAAAQNALGVDAQDVGPGLAAAFGLPRPAGALVNAVEPGSPAAAV
GLKPGDVIVQIGDRPLGGTGRRPRGAAARGERADHADPQPDADDGDARLRRGRERADR
RDRIAGQCGRRPQRDGRRGPPGPDDASADGRRAALDGIARRHGGRCGARAGGERGDSA
GRRRAGARRYADRDAGHGAGAGGEGGEGGRGADSAGERAQVRVGEGAVKPRWRRSAPP
AVRHAPGAGVAAARRRTARARAIRRVGEARVRKHRVFL"
misc_feature complement(471707..472108)
/locus_tag="BMA10229_A0449"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature complement(<471362..471520)
/locus_tag="BMA10229_A0449"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
gene complement(472772..473329)
/locus_tag="BMA10229_A0450"
/note="membrane protein, truncation"
/pseudo
/db_xref="GeneID:4791184"
gene complement(473401..474234)
/locus_tag="BMA10229_A0451"
/db_xref="GeneID:4790635"
CDS complement(473401..474234)
/locus_tag="BMA10229_A0451"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfB"
/protein_id="YP_001026449.1"
/db_xref="GI:124386130"
/db_xref="GeneID:4790635"
/translation="MLAIREKVNISERRACRLVGLSRSVLHYDAKPDHENEVLAARLV
KLAHERRRFGYRRLHALVEREGTHANHKRIYRLYREAGLAVRRRRKRHGVMIEREQLA
LPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRA
ARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDE
CLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQEL
V"
misc_feature complement(473461..474177)
/locus_tag="BMA10229_A0451"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature complement(473962..474132)
/locus_tag="BMA10229_A0451"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature complement(473578..473916)
/locus_tag="BMA10229_A0451"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature complement(473467..473667)
/locus_tag="BMA10229_A0451"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(474258..474521)
/locus_tag="BMA10229_A0452"
/db_xref="GeneID:4791983"
CDS complement(474258..474521)
/locus_tag="BMA10229_A0452"
/note="identified by match to protein family HMM PF01527"
/codon_start=1
/transl_table=11
/product="IS407A, transposase OrfA"
/protein_id="YP_001026450.1"
/db_xref="GI:124384994"
/db_xref="GeneID:4791983"
/translation="MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKF
GGMEVSEARRLKGLEVENARLKKLLAEAMLDMEALKVVVKGKP"
misc_feature complement(474321..474518)
/locus_tag="BMA10229_A0452"
/note="Transposase; Region: HTH_Tnp_1; pfam01527"
/db_xref="CDD:201841"
gene complement(474552..475268)
/locus_tag="BMA10229_A0453"
/db_xref="GeneID:4793035"
CDS complement(474552..475268)
/locus_tag="BMA10229_A0453"
/note="identified by match to protein family HMM PF06779"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026451.1"
/db_xref="GI:124384820"
/db_xref="GeneID:4793035"
/translation="MSSLPSFLAAASGSRGPSHDQRAACRAALAGAVALAVALGVGRF
AFTPLLPLMLAGGELDIRHGGWLASANYAGYFVGAMTCARIAVDPARMVRAGLAATVL
LTFAMGLASPFWVWALVRFVGGAVSAWTFVFASQWGLRRVVEHGAPAWGGVIYTGPGI
GIVATGLIGFALAGRHAALGWIGFAAASAVLTAFVWRAFGAAGAGTDGGQSRGGAKRA
GDGVGVADVTCPLQTGPAGV"
misc_feature complement(<474681..475133)
/locus_tag="BMA10229_A0453"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 475355..476380
/locus_tag="BMA10229_A0454"
/db_xref="GeneID:4793223"
CDS 475355..476380
/locus_tag="BMA10229_A0454"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_001026452.1"
/db_xref="GI:124383594"
/db_xref="GeneID:4793223"
/translation="MTDHSRKMNNSDSIHPTERIMDLAALAIFRAVVRENGVTRAAAK
LNRVQSNVTTRIKQLEEQLGAPLFVRDGRRLVLTPAGETLLPYAERLLALADEARHAV
TENRPHGRLRLGAMESTAASRLPALLARYHQAWPDVTLELVTGTTGKLIGLVRDFELD
AALVATPAGSEALGEPFETASAFTEELVLLTPRGHPRVRTPRDVRLPTLVAFERGCAY
RGCVERWYAAEGLKPERVLELGSYHAIVACVAAGAGVAVAPRSVLAVQREPDSLGVHP
IDGMPPIDTMLVWRQGHFSAALAALRDALRDAAAAANATDVAAHEAAKVAPRRTRRGA
ARETLPA"
misc_feature 475415..476236
/locus_tag="BMA10229_A0454"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 475421..475600
/locus_tag="BMA10229_A0454"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 475682..476239
/locus_tag="BMA10229_A0454"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature order(475727..475732,475736..475741,475748..475750,
475760..475762,475766..475786,476060..476077,
476093..476098,476102..476107)
/locus_tag="BMA10229_A0454"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene complement(476884..479508)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/db_xref="GeneID:4793954"
CDS complement(476884..479508)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/EC_number="6.1.1.7"
/note="Catalyzes a two-step reaction, first charging an
alanyl molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="alanyl-tRNA synthetase"
/protein_id="YP_001026453.1"
/db_xref="GI:124386422"
/db_xref="GeneID:4793954"
/translation="MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQ
FKDVFLGAETRPYSRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFK
RDAIHYAWELLTSVYKLPADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGAR
YASDNFWQMGDTGPCGPCSEIFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRD
AQGNMTRLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQQLIKASARETGVADLANNS
LKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADL
VAEMGAAYPELKEAEPRVTDVLRQEEERFFETIEHGMSILEAALAELDAAGGKTLDGE
LAFKLHDTYGFPLDLTADVCRERGVTVDEPAFDDAMARQREQARAAGKFKATQGLEYT
GAKTTFHGYEEIAFDDAKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ
GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSA
THLMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANA
PGIVRVMPYDDAVKGGAMALFGEKYGDEVRVLDLGFSRELCGGTHVHRTGDIGLFKIV
AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKS
LEKELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKS
AAIVLAAVDGGKVSLIAGVTADASKKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEP
AKLPAALAGVKGWVEARL"
misc_feature complement(476887..479508)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/note="alanyl-tRNA synthetase; Reviewed; Region: alaS;
PRK00252"
/db_xref="CDD:234701"
misc_feature complement(478768..479502)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/note="Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is responsible
for the attachment of alanine to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: AlaRS_core;
cd00673"
/db_xref="CDD:238360"
misc_feature complement(479434..479448)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/note="motif 1; other site"
/db_xref="CDD:238360"
misc_feature complement(order(478792..478794,478801..478806,
478816..478821,478876..478878,478888..478893,
479224..479232,479236..479238,479242..479244,
479305..479307,479359..479361,479365..479367))
/gene="alaS"
/locus_tag="BMA10229_A0455"
/note="active site"
/db_xref="CDD:238360"
misc_feature complement(479302..479310)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/note="motif 2; other site"
/db_xref="CDD:238360"
misc_feature complement(478792..478809)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/note="motif 3; other site"
/db_xref="CDD:238360"
misc_feature complement(477427..477552)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; smart00863"
/db_xref="CDD:197931"
misc_feature complement(476908..477117)
/gene="alaS"
/locus_tag="BMA10229_A0455"
/note="DHHA1 domain; Region: DHHA1; pfam02272"
/db_xref="CDD:216955"
gene 480176..481396
/locus_tag="BMA10229_A0456"
/db_xref="GeneID:4791551"
CDS 480176..481396
/locus_tag="BMA10229_A0456"
/note="identified by match to protein family HMM PF02515"
/codon_start=1
/transl_table=11
/product="CAIB/BAIF family protein"
/protein_id="YP_001026454.1"
/db_xref="GI:124385006"
/db_xref="GeneID:4791551"
/translation="MGALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDT
RHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLEN
YKVGQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITG
ERDGLPGGGPQKAGVAIADLATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALL
ANMNTNFLASGKPPVRWGNAHPNIVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPE
LADDERFATNPARVRHRDTLVPIVAAMTKTRTKREWLDALEALGVPCGPINDLAEVFD
DEQVRARGMQVDLPHPSGASAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGY
GDAAIAALRDKRVV"
misc_feature 480176..481393
/locus_tag="BMA10229_A0456"
/note="Predicted acyl-CoA transferases/carnitine
dehydratase [Energy production and conversion]; Region:
CaiB; COG1804"
/db_xref="CDD:224717"
misc_feature 480401..480946
/locus_tag="BMA10229_A0456"
/note="CoA-transferase family III; Region: CoA_transf_3;
pfam02515"
/db_xref="CDD:217078"
gene complement(481526..481639)
/locus_tag="BMA10229_A0457"
/db_xref="GeneID:4793047"
CDS complement(481526..481639)
/locus_tag="BMA10229_A0457"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026455.1"
/db_xref="GI:124384448"
/db_xref="GeneID:4793047"
/translation="MSERRAGRSRAGDVSVTFFDASTYAGSRADSARRSAR"
gene complement(481720..481959)
/locus_tag="BMA10229_A0458"
/db_xref="GeneID:4793574"
CDS complement(481720..481959)
/locus_tag="BMA10229_A0458"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001026456.1"
/db_xref="GI:124384936"
/db_xref="GeneID:4793574"
/translation="MRGNALEDSIMMKKTHFLVRATVIAVVLASLGACAMNRTQRNAG
IGAAAGGALGYLITGGPIGTVAGAAAGGLVGAGVR"
gene 482207..483916
/gene="glnS"
/locus_tag="BMA10229_A0459"
/db_xref="GeneID:4793158"
CDS 482207..483916
/gene="glnS"
/locus_tag="BMA10229_A0459"
/EC_number="6.1.1.18"
/note="catalyzes a two-step reaction, first charging a
glutamine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="glutaminyl-tRNA synthetase"
/protein_id="YP_001026457.1"
/db_xref="GI:124385928"
/db_xref="GeneID:4793158"
/translation="MSTERNDATAPSNFIRNIIDDDNRTGKWSGRVETRFPPEPNGYL
HIGHAKSICLNFSVARDYGGVCHLRFDDTNPEKESVEYVNSIVDAVRWLGFDWQKAGV
DHQYFASDYYDKLYEFAELLIQRGCAYVDSQSADEMRTNRGSLTEPGTPSPFRDRSPD
ENLALFRRMKAGEFAEGEHVLRAKIDMSSPNMNMRDPVIYRIRYAHHYRTGDKWCVYP
MYDYTHCISDALEGITHSLCTLEFEDHRPLYDWVLNQLADAGVFARPLPQQIEFSRLN
LTYAITSKRKLLQLVTEGHVDDWDDPRMPTIVGVRRRGFTPESIQLFCERIGVTKVDS
WIDMSVFEGALRDDLDDKAPRTVAVLDPLKLVIDNYPQGQSEECTAPVHPHHPERGQR
TFPISRELWIEREDFSEHPPKGYFRLFPGNKVRLRYGYVIECTGADKDEHGNVTAVHC
NYYPDSKSGTEGANNYKVKGNIHWVSAAHACPAEVRIYDRLFKEPHPDAGGRNFLEAL
NPDSKKIVQAYLEPGARDALPEARYQFERHGYFVADRVDSKPGQPVFNRIVGLRDSWG
KPA"
misc_feature 482210..483910
/gene="glnS"
/locus_tag="BMA10229_A0459"
/note="glutaminyl-tRNA synthetase; Provisional; Region:
PRK05347"
/db_xref="CDD:235424"
misc_feature 482297..>482617
/gene="glnS"
/locus_tag="BMA10229_A0459"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:241550"
misc_feature 482339..482350
/gene="glnS"
/locus_tag="BMA10229_A0459"
/note="active site"
/db_xref="CDD:173912"
misc_feature 482339..482350
/gene="glnS"
/locus_tag="BMA10229_A0459"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature order(482339..482341,482348..482350)
/gene="glnS"
/locus_tag="BMA10229_A0459"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature <482816..483271
/gene="glnS"
/locus_tag="BMA10229_A0459"
/note="catalytic core domain of glutaminyl-tRNA
synthetase; Region: GlnRS_core; cd00807"
/db_xref="CDD:185676"
misc_feature 483047..483061
/gene="glnS"
/locus_tag="BMA10229_A0459"
/note="KMSKS motif; other site"
/db_xref="CDD:185676"
misc_feature 483263..483838
/gene="glnS"
/locus_tag="BMA10229_A0459"
/note="tRNA synthetases class I (E and Q), anti-codon
binding domain; Region: tRNA-synt_1c_C; pfam03950"
/db_xref="CDD:217810"
gene complement(484248..484730)
/locus_tag="BMA10229_A0460"
/db_xref="GeneID:4792143"
CDS complement(484248..484730)
/locus_tag="BMA10229_A0460"
/note="identified by match to protein family HMM PF00293"
/codon_start=1
/transl_table=11
/product="NUDIX domain-containing protein"
/protein_id="YP_001026458.1"
/db_xref="GI:124386409"
/db_xref="GeneID:4792143"
/translation="MSAMKPPGRTRARTVSCGVVLLDSGGCVLLAHATDTTHWDIPKG
QGEPGETAQQAALRELAEETGIVLDPARLVDLGLFAYRRDKDLHLFAARAAAGETDLS
RCTCTSMFPSRRDGTMIPEMDAFRWTAPADVDAYASRSLARLFGTTLSLAALHRTLAG
"
misc_feature complement(484296..484688)
/locus_tag="BMA10229_A0460"
/note="Nudix hydrol 