LOCUS NC_009879 1159772 bp DNA circular BCT 26-SEP-2012
DEFINITION Rickettsia canadensis str. McKiel, complete genome.
ACCESSION NC_009879
VERSION NC_009879.1 GI:157803189
DBLINK Project: 58159
BioProject: PRJNA58159
KEYWORDS .
SOURCE Rickettsia canadensis str. McKiel
ORGANISM Rickettsia canadensis str. McKiel
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
Rickettsiaceae; Rickettsieae; Rickettsia; belli group.
REFERENCE 1 (bases 1 to 1159772)
AUTHORS Madan,A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Dasch,G. and Eremeeva,M.
TITLE Complete Genome Sequence of Rickettsia canadensis
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1159772)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1159772)
AUTHORS Madan,A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Dasch,G. and Eremeeva,M.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2007) Neurogenomics Research Lab, University of
Iowa, 200 B EMRB, Iowa City, IA 52242, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000409.
Annotation was added by the NCBI Prokaryotic Genomes Automatic
Annotation Pipeline Group. Information about the Pipeline can be
found here:
http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
aware that the annotation is done automatically with little or no
manual curation.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1159772
/organism="Rickettsia canadensis str. McKiel"
/mol_type="genomic DNA"
/strain="McKiel"
/db_xref="taxon:293613"
gene 1..822
/locus_tag="A1E_00005"
/db_xref="GeneID:5626507"
CDS 1..822
/locus_tag="A1E_00005"
/note="COG1806 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491739.1"
/db_xref="GI:157803190"
/db_xref="GeneID:5626507"
/translation="MTKLIIHLVSDSSVQTAKYAANSALAQFTSIKPKLYHWPMIRNL
ELLNEVLSKIESKHGIVLYTIADQELRKTLTKFCYELKIPCISIIGKIIKEMSVFSDI
EIEKEQNFNYKFDKTYFDTLNAIDYAIRHDDGQMLNELPEADIILIGPSRTSKTPTSV
FLAYNGLKAANIPYVYNCPFPDFIEKDIDQLVVGLVINPNRLIEIREARLNLLQINEN
KSYTDFNIIQKECLEVRKICEQRNWPVIDVSTRSIEETAALIMRIYYNRKNKYNK"
misc_feature 1..813
/locus_tag="A1E_00005"
/note="PEP synthetase regulatory protein; Provisional;
Region: PRK05339"
/db_xref="CDD:180026"
gene 1065..1382
/locus_tag="A1E_00010"
/db_xref="GeneID:5626202"
CDS 1065..1382
/locus_tag="A1E_00010"
/note="COG0526 Thiol-disulfide isomerase and thioredoxins"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_001491740.1"
/db_xref="GI:157803191"
/db_xref="GeneID:5626202"
/translation="MASNVNDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEIS
KELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKSYLLDWIH
KFV"
misc_feature 1098..1367
/locus_tag="A1E_00010"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature order(1152..1154,1161..1163)
/locus_tag="A1E_00010"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene 1375..2136
/locus_tag="A1E_00015"
/db_xref="GeneID:5626203"
CDS 1375..2136
/locus_tag="A1E_00015"
/note="COG1129 ABC-type sugar transport system, ATPase
component"
/codon_start=1
/transl_table=11
/product="O-antigen export system ATP-binding protein
RfbE"
/protein_id="YP_001491741.1"
/db_xref="GI:157803192"
/db_xref="GeneID:5626203"
/translation="MFNIYFMSLNHSKVLIEITDGYVEGIDTHKRAQGLKHFFLKKGV
SLSPNILILNNINFSCYEGEKVAFIGTNGSGKSSLLKLIAGIYPLKSGTIKVHGDIAA
IIDMGVGFESEQTGRENIKMLMLYNNMLDKYSEKIEKEIIDFSELGNKIDLPIKIYSS
GMLSRLAFSVSIFQNPQILLLDEVFAAGDSYFIEKSLSLMKNKFKNTPISIIVSHQEE
IIKDNCDRCILLKDGNIIGDGTPLEMFKIYNRLLV"
misc_feature 1393..2130
/locus_tag="A1E_00015"
/note="ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagH; COG1134"
/db_xref="CDD:31329"
misc_feature 1420..2091
/locus_tag="A1E_00015"
/note="ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and...;
Region: ABC_KpsT_Wzt; cd03220"
/db_xref="CDD:72979"
misc_feature 1582..1605
/locus_tag="A1E_00015"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72979"
misc_feature order(1591..1596,1600..1608,1810..1812,1918..1923,
2017..2019)
/locus_tag="A1E_00015"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72979"
misc_feature 1801..1812
/locus_tag="A1E_00015"
/note="Q-loop/lid; other site"
/db_xref="CDD:72979"
misc_feature 1846..1875
/locus_tag="A1E_00015"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72979"
misc_feature 1906..1923
/locus_tag="A1E_00015"
/note="Walker B; other site"
/db_xref="CDD:72979"
misc_feature 1930..1941
/locus_tag="A1E_00015"
/note="D-loop; other site"
/db_xref="CDD:72979"
misc_feature 2005..2025
/locus_tag="A1E_00015"
/note="H-loop/switch region; other site"
/db_xref="CDD:72979"
gene 2295..3071
/locus_tag="A1E_00020"
/db_xref="GeneID:5626204"
CDS 2295..3071
/locus_tag="A1E_00020"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491742.1"
/db_xref="GI:157803193"
/db_xref="GeneID:5626204"
/translation="MIKYFFSKKYWQAIALLVKASIIRQNKDSFLGSLWSLIQPFIHI
MVISYFFSFLLRQPREFMVMNLVGGLPLWSFIVSSLTICSSSLVTRDQIIKKVRISKT
FFPVSDSLGQLYNLICSFSAMYFAFILLFPEKFSWQIIFMPVLIFPLIICVISGSIAV
AFLTPYIRDIPQILNVILGVIYWSIPIVYPYSLIPESKRIYFEFNPFFLVIRPVQALV
IDGTLPDMILIVKSVIVAFITVCISYFIYRQFSKRVIYYL"
misc_feature 2295..3068
/locus_tag="A1E_00020"
/note="ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagG; COG1682"
/db_xref="CDD:31868"
gene 3068..6214
/locus_tag="A1E_00025"
/db_xref="GeneID:5626205"
CDS 3068..6214
/locus_tag="A1E_00025"
/note="undetermined function"
/codon_start=1
/transl_table=11
/product="putative bifunctional glutamate synthase subunit
beta/2-polyprenylphenol hydroxylase"
/protein_id="YP_001491743.1"
/db_xref="GI:157803194"
/db_xref="GeneID:5626205"
/translation="MKLGFNLDFNELDLTGLKKLDQIFLDYLFKADSSLHKDLILFRS
TPFSIIPQDYSEFLLKISPYLDDFLAELFCISKEVIISRLKHKDFDIIYECKRKFVQR
IAIKKYPPEKIKNIDFEEIYLKLTDLIGTNFTSREFAKQIIIWQQEEESFVEELDIAA
QYAAYMVYGQCHSSKSVNLEKLSLDPCFYRDDITNDSILFNLPQKLDKENLIDDKKIL
KYQRNQRIDFNYTNIFSNLEEALNNSHYCIYCHKQDKDSCSKGINVIRWPPRRHGIQK
KIKKDWIPRLDRTMTTGCPLKQKISEMNYVKAQGFNLSALAIIVIDNPMVAATGHRIC
NDCVRACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEST
NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKISLLPFDVNKPIKFWHEYKSLLSE
RMARGFGGVSEYGITIRWDKNNLDILRLILERNDNFKYYDGVTLGSNIMKEQAFSLGF
DHIAFCIGAGQPKVLDIENFEAKGVKMASDFLMTLQSGGAFLENSNANMLIRMPIAII
GGGLTSIDAATESLYYYKMQVERFFKDYELAVQKYGKDYIEKDLTEEDKEIAEEFIAH
ARLFKEVKNHEELRKLFNKLGGSTIYYRGKLQESPAYKLNHEELIYAMALGIDFRENM
QPLRINTDKYGHVESVTFSIIPRLDHGIQIQGNYQDNIMDPAIKSWDDTEVLKAKTVI
IAIGIENNLELDENKYSYFGDCNPEYSGSVVKALASSKEGYENINKRLINNNPSFKDS
YRDFITQLDYLLISRIHKINILDDKTFELVIHSPLAAKNFKFGQFFRLQNYSEDIAKL
IEPLALSPTDIDIEKGLISFIVFEVGKSTSLCKTLSENEKVVLMGPTGIPLEIPQNKK
IVIVDSKVSNVSLLKVLKENNNEVIFFTYPDIKTRKLTSVDRVIINASPEIIEELQSL
KNEIFGENTELIVSVNSSMQCMMKGICGQCIQKVRGEQKYIFACSCQNQKAEIVDFES
LKTRLRKNSLQEKMRRLV"
misc_feature 3068..6208
/locus_tag="A1E_00025"
/note="putative bifunctional glutamate synthase subunit
beta/2-polyprenylphenol hydroxylase; Validated; Region:
PRK06567"
/db_xref="CDD:168614"
misc_feature 5507..6130
/locus_tag="A1E_00025"
/note="FAD/NAD binding domain (electron transfer subunit)
of dihydroorotate dehydrogenase-like proteins.
Dihydroorotate dehydrogenases (DHODs) catalyze the only
redox reaction in pyrimidine de novo biosynthesis. They
catalyze the oxidation of (S)-dihydroorotate...; Region:
DHOD_e_trans_like; cd06192"
/db_xref="CDD:99789"
misc_feature order(5639..5641,5645..5656,5696..5704,5720..5728,
5831..5833,6032..6037)
/locus_tag="A1E_00025"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5645..5647,5651..5656)
/locus_tag="A1E_00025"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5717..5719,5726..5728,5735..5737,5747..5749,
5771..5773,5777..5779)
/locus_tag="A1E_00025"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5816..5818,5828..5839)
/locus_tag="A1E_00025"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99789"
misc_feature order(5831..5836,5948..5953)
/locus_tag="A1E_00025"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(6044..6046,6062..6064,6071..6073,6119..6121)
/locus_tag="A1E_00025"
/note="Iron coordination center [ion binding]; other site"
/db_xref="CDD:99789"
gene complement(6333..7127)
/locus_tag="A1E_00030"
/db_xref="GeneID:5626206"
CDS complement(6333..7127)
/locus_tag="A1E_00030"
/EC_number="2.3.1.129"
/note="catalyzes the addition of
(R)-3-hydroxytetradecanoyl to the glucosamine disaccharide
in lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine acyltransferase"
/protein_id="YP_001491744.1"
/db_xref="GI:157803195"
/db_xref="GeneID:5626206"
/translation="MSNSNIHPTAVIAEGANLGKNVKIGPYCIIGAEVVLNDNVELKS
HVVIEGITEIGENTIIYPFASIGQPPQILKYANERSSTIIGSNNTIREYVTVQAGSQG
GGMITRIGNNNLFMVGVHVGHDCKIGNNVVFANYVSLAGHIEVGDYVIISGLSAVHQY
ARIGKYSMIGGLSPVGSDVIPFGLVSSKRAVLEGLNLIGMNRKGFDKAESLSALKAIK
EIFSSEGNFAERIKQVAEKYKNNSIVMQIIDFLNQDSSRAFCHFEK"
misc_feature complement(6336..7124)
/locus_tag="A1E_00030"
/note="UDP-N-acetylglucosamine acyltransferase;
Provisional; Region: PRK05289"
/db_xref="CDD:179994"
misc_feature complement(6351..7115)
/locus_tag="A1E_00030"
/note="UDP-N-acetylglucosamine O-acyltransferase
(UDP-GlcNAc acyltransferase): Proteins in this family
catalyze the transfer of (R)-3-hydroxymyristic acid from
its acyl carrier protein thioester to UDP-GlcNAc. It is
the first enzyme in the lipid A biosynthetic...; Region:
LbH_UDP-GlcNAc_AT; cd03351"
/db_xref="CDD:100042"
misc_feature complement(order(6519..6524,6540..6542,6615..6617,
6651..6656,6702..6704,6759..6761,6768..6770,6837..6839,
6906..6908,6915..6917))
/locus_tag="A1E_00030"
/note="active site"
/db_xref="CDD:100042"
gene complement(7135..7569)
/gene="fabZ"
/locus_tag="A1E_00035"
/db_xref="GeneID:5626207"
CDS complement(7135..7569)
/gene="fabZ"
/locus_tag="A1E_00035"
/note="in Pseudomonas aeruginosa this enzyme is a trimer
of dimers; essential for membrane formation; performs
third step of type II fatty acid biosynthesis; catalyzes
dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_001491745.1"
/db_xref="GI:157803196"
/db_xref="GeneID:5626207"
/translation="MMDITEIMNLIPHRYPFLLVDRVLEIDLNKSILGIKNVTVNEPQ
FTGHFPARPVMPGVLMVEAMAQLAAILVAKSLGSTKNKEVFLMTIENSKFRRIVQPGD
TMHIHTVIDQQRANVWKFSSTVKIEGEITAESKFTAMIKDKA"
misc_feature complement(7147..7539)
/gene="fabZ"
/locus_tag="A1E_00035"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene complement(7570..8598)
/gene="lpxD"
/locus_tag="A1E_00040"
/db_xref="GeneID:5626513"
CDS complement(7570..8598)
/gene="lpxD"
/locus_tag="A1E_00040"
/note="adds the O-linked and N-linked 3(R)-hydroxy fatty
acids to the glucosamine disaccharide during lipid A
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="YP_001491746.1"
/db_xref="GI:157803197"
/db_xref="GeneID:5626513"
/translation="MASSNFYKNLGPRKLTTIIDFLHDIIEHPKIYEDIVIHDIKILQ
EASRNDISFLSNTKYSEFLKTTNAAACIVPKNFKGEVNPNTILIHAENSYFAYGKLID
FFYAPIKSYPAKIMKSAIVAASAIIGKNCYIGHNVVIEDDVIIGDNSIIEAGSFIGRG
VNLGRNARIEQHVSINYAIIGDDVVILTGAKIGQDGFGFSTEKGVHHQIFHTGIVKIG
NNVKIGANTTIDRGSLQDTIIEDLCCIDNLVQIGHGVKIGKGSIIIAQVGIAGSSTIG
KYCALGGQVGIAGHLNIGDQVQVAAQSGVAQNIEAGKIVGGSPAVHIMNWHRQSIIMK
QLIKKRPK"
misc_feature complement(7573..8568)
/gene="lpxD"
/locus_tag="A1E_00040"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional; Region: lpxD; PRK00892"
/db_xref="CDD:179158"
misc_feature complement(8287..8502)
/gene="lpxD"
/locus_tag="A1E_00040"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:203056"
misc_feature complement(7618..8229)
/gene="lpxD"
/locus_tag="A1E_00040"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature complement(order(7624..7626,7636..7638,7687..7695,
7729..7731,7741..7749,7765..7767,7795..7803,7813..7815,
7819..7821,7837..7839,7849..7851,7855..7863,7867..7869,
7894..7902,7909..7911,7915..7917,7921..7923,7933..7935,
7969..7977,8008..8010,8014..8016,8032..8034,8038..8040,
8071..8073,8077..8079,8083..8085,8122..8124,8176..8181,
8191..8193))
/gene="lpxD"
/locus_tag="A1E_00040"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature complement(order(7696..7698,7729..7734,7783..7791,
7804..7809,7837..7842,7849..7851,7861..7863,8002..8010))
/gene="lpxD"
/locus_tag="A1E_00040"
/note="active site"
/db_xref="CDD:100043"
misc_feature complement(order(7729..7734,7783..7788,7837..7842,
8002..8010))
/gene="lpxD"
/locus_tag="A1E_00040"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature complement(order(7696..7698,7789..7791,7804..7809,
7849..7851,7861..7863))
/gene="lpxD"
/locus_tag="A1E_00040"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene complement(8620..8695)
/locus_tag="A1E_t05682"
/db_xref="GeneID:5626514"
tRNA complement(8620..8695)
/locus_tag="A1E_t05682"
/product="tRNA-Phe"
/db_xref="GeneID:5626514"
gene 8865..9845
/locus_tag="A1E_00045"
/db_xref="GeneID:5626515"
CDS 8865..9845
/locus_tag="A1E_00045"
/note="COG0042 tRNA-dihydrouridine synthase"
/codon_start=1
/transl_table=11
/product="nifR3-like protein"
/protein_id="YP_001491747.1"
/db_xref="GI:157803198"
/db_xref="GeneID:5626515"
/translation="MIKIGDIVLSSNIILAPMSGVTDLEFRRLVKRFGVGLVVSEMVA
SRAMIVESRQSLQKSAIMRDDATSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGC
PAKKVVEGYSGSALMRDEQLAAKIFEATVKAVKIPVTVKMRMGWDDQTKNAPTLANIA
ENSGIQMVTVHGRTRCQFYSGNADWDFIRSVKEVVNIPVIANGDITNFTKAKEALQKS
GADGIMIGRGAYGKPWLISQIDHYLKTGEAKPAPSIAEQLDIVTEHYEAIIDYYGESV
GVPIARKHIGWYSSGLPNSAEFRGAVNLMNDSVAVKEKIKEFYTSIIDTR"
misc_feature 8874..9830
/locus_tag="A1E_00045"
/note="putative TIM-barrel protein, nifR3 family; Region:
nifR3_yhdG; TIGR00737"
/db_xref="CDD:129820"
misc_feature 8898..9596
/locus_tag="A1E_00045"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:73368"
misc_feature order(8910..8918,8988..8990,9078..9080,9159..9161,
9285..9287,9375..9377,9468..9470,9474..9476,9540..9545)
/locus_tag="A1E_00045"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73368"
misc_feature order(9078..9080,9168..9173,9285..9287,9291..9293,
9372..9377,9381..9386,9471..9476,9543..9545)
/locus_tag="A1E_00045"
/note="active site"
/db_xref="CDD:73368"
misc_feature order(9168..9170,9291..9293,9375..9377,9381..9383)
/locus_tag="A1E_00045"
/note="catalytic residues [active]"
/db_xref="CDD:73368"
misc_feature order(9171..9173,9285..9287,9372..9374,9384..9386,
9471..9476)
/locus_tag="A1E_00045"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73368"
gene complement(10469..10900)
/locus_tag="A1E_00050"
/db_xref="GeneID:5626516"
CDS complement(10469..10900)
/locus_tag="A1E_00050"
/note="COG0802 Predicted ATPase or kinase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491748.1"
/db_xref="GI:157803199"
/db_xref="GeneID:5626516"
/translation="MFINLNNEEETKNLAKRFAQNLKPNDIVLLNSDLGSGKTFFCRE
IIKYFCGENTSIISPTFNLLQTYKASNFTIYHYDLYRLKSPEEIYELGFEEALNGNLI
LIEWSQIIKHLLPTTLIEVNLEVLDENKRLCSIITNYKENS"
misc_feature complement(10502..10870)
/locus_tag="A1E_00050"
/note="Uncharacterized P-loop hydrolase UPF0079; Region:
UPF0079; pfam02367"
/db_xref="CDD:202221"
gene complement(10891..11694)
/locus_tag="A1E_00055"
/db_xref="GeneID:5626517"
CDS complement(10891..11694)
/locus_tag="A1E_00055"
/note="COG0803 ABC-type metal ion transport system,
periplasmic component/surface adhesin"
/codon_start=1
/transl_table=11
/product="zinc/manganese ABC transporter substrate binding
protein"
/protein_id="YP_001491749.1"
/db_xref="GI:157803200"
/db_xref="GeneID:5626517"
/translation="MTYIILIFFTLFSFASYAKPKIVVSITPIASIVSMLVKDKADIK
SLAISSDCPHHYNLKPSDLAKVKNADIAIYINEQFDGFAKKLIDNHSQNIIKISDIKS
LTSIKDNWHIWLDLNNSAILLQEFAQIFSEKFPALQEDINNNLSAALKELNKLKEIKN
NALASLKDVILLSDSTEYFFLNTNIKTAKLYSESQKSLQYISNLEALIKGSNNKCLVL
SNKQTSQLYDKLNTKIIILNSENWNVKNINSNTFQNQYLQIIDQVKKCL"
misc_feature complement(10894..11685)
/locus_tag="A1E_00055"
/note="ABC-type metal ion transport system, periplasmic
component/surface adhesin [Inorganic ion transport and
metabolism]; Region: LraI; COG0803"
/db_xref="CDD:31146"
misc_feature complement(10894..11631)
/locus_tag="A1E_00055"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:201717"
misc_feature complement(order(11311..11313,11431..11433,11440..11445))
/locus_tag="A1E_00055"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29734"
gene complement(11798..13009)
/locus_tag="A1E_00060"
/db_xref="GeneID:5626518"
CDS complement(11798..13009)
/locus_tag="A1E_00060"
/EC_number="2.7.7.19"
/note="COG0617 tRNA nucleotidyltransferase/poly(A)
polymerase"
/codon_start=1
/transl_table=11
/product="poly(A) polymerase"
/protein_id="YP_001491750.1"
/db_xref="GI:157803201"
/db_xref="GeneID:5626518"
/translation="MQIIQKTLKISSKGYKKILSLLNEKGQARLIGGCVRDALLKKDS
YDIDIDTTLIPSEVINILSRAKIKTIPTGLKFGTITAILDKEKFEITTLRKDIECNGR
HAKLVFTNDFAEDAARRDFTINALSYCPFKNKIYDYFDGFKDLQQEKVVFIGEALNRI
KEDYLRILRFFRFSSYYANQLDHEGLKACKVLKYGLKTLSRERIKSEMNKIIVSKRAA
QILEAMFEIGILELIFSIQNYKIKFFEQANDFKLELATRYALLLYNQKDLNLKVFLDW
KFSKYEAMQILSITNFLNDTECNMKKIWLEKNNYKEYLLAASIIGKLDYLQVKEFIRK
YDAVLRPKFQVNGNNLLNMNIEKKEIGAKLEYLKNFWIEHDFKPSKLELLRVISRGSS
NPVIKRSKYEK"
misc_feature complement(11858..12997)
/locus_tag="A1E_00060"
/note="tRNA nucleotidyltransferase/poly(A) polymerase
[Translation, ribosomal structure and biogenesis]; Region:
PcnB; COG0617"
/db_xref="CDD:30962"
misc_feature complement(12569..12976)
/locus_tag="A1E_00060"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature complement(order(12638..12640,12647..12658,12728..12730,
12743..12745,12782..12784,12866..12868,12872..12874,
12899..12904,12911..12916))
/locus_tag="A1E_00060"
/note="active site"
/db_xref="CDD:143388"
misc_feature complement(order(12638..12640,12650..12658,12866..12868,
12872..12874,12902..12904,12911..12916))
/locus_tag="A1E_00060"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature complement(order(12743..12745,12866..12868,12872..12874))
/locus_tag="A1E_00060"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature complement(12308..12472)
/locus_tag="A1E_00060"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:204988"
gene complement(13738..14010)
/locus_tag="A1E_00065"
/db_xref="GeneID:5625864"
CDS complement(13738..14010)
/locus_tag="A1E_00065"
/codon_start=1
/transl_table=11
/product="ComEC/Rec2-related protein"
/protein_id="YP_001491751.1"
/db_xref="GI:157803202"
/db_xref="GeneID:5625864"
/translation="MTKTEVSLLKSGLHLSLVVIIVFLTTRFLLNHSNHLAYNFNIKL
ISAYYSLVGSFGYLELSGMLAATSAFITATIFITQTLLLSSSFIYN"
gene 14292..14453
/locus_tag="A1E_00070"
/db_xref="GeneID:5625865"
CDS 14292..14453
/locus_tag="A1E_00070"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491752.1"
/db_xref="GI:157803203"
/db_xref="GeneID:5625865"
/translation="MIFRDKYAKNKSNNHLISKMKNMLEFLVKVNIKQIQKMIKIVVN
ESSKLSINS"
gene 14710..19161
/locus_tag="A1E_00075"
/db_xref="GeneID:5625866"
CDS 14710..19161
/locus_tag="A1E_00075"
/codon_start=1
/transl_table=11
/product="cell surface antigen Sca1"
/protein_id="YP_001491753.1"
/db_xref="GI:157803204"
/db_xref="GeneID:5625866"
/translation="MSTLIEQSQLQKSRFLKYSLLASISVGTIITLPFEGMASSEPIN
LDIIERGDNGLLQPVINNKFERAKSFATAGNKRKRPPTRRKILVGNETTEQNQNIDTS
EPIEQTAQKPEIIITVSSPTVSPTSGSFVTAPNTLNTTPIFSTPSTSPEHIYTTAPGT
PYDEPIPHATPNNQYAVARRLSFSEPQQIEQPTTLIKPTMSPKPTTLEITAGIVNRIS
THNENAKRKLGMITAAIEQTSGKKAKKSAQKKAPVAEVSTAGPFLNQQRQLDVLTQKQ
KVNAVRQAAVNKKKRRENEVKRNSTDVEKLITQMNQVQLEQNQRRIAAELQRKAETST
KHVTIKNKNKSKADKVRQEKTFLQKIHLTKTEQEKKIAEDKNARAAAEKVRKEKNKQA
QKAEEISNIKLKVSEQLIQMLDYKAKLQEKLQEVERIEAKHEVSVIKKELKNIEKLVS
KAAKVVNNAETETSRTTLQVMQDKMNGYSEQLDKIEENLKLLTPIVYSSNDSTYKQPP
KAKPIMPLTSGVQGILGKQLQLEEKYGYLVPNQTQPQTYTTVLPNQEVADPKRMDSGF
VSLDKETDADVGFNTSCGKGTDCTQVGQELSFELPTLKVLGYQDNINQTLDTIARANS
IERPILFQNLLKDLERRKQEAKMVEEQAIMHVINNPNDDQAKEQVALVDKLLEKYNTD
IKLVRKTLEDNKENNSRNNVKKPLERLVFEAKLPPIREYDALCEESQKVIASKRATEE
LRNQREDDPELEKLAIIEYMEVQKKQSQLEQDIKAIDPLFQAAIYSDSELSRELSRSY
SVGDILSNTESNLSHSSSVSSLNNLSSSNVMKLEELKSKYEKISNDYKAKELELDALN
QNDPKFKELMLEVFAMSKDKIWLEGEIKHLETQFEPNIHSAEGKPVFSPDSINSVFSG
VDYINTNDPTKLIENKIAALRIYQMAVIVKRQELEQLPSTSSGADQTAQQIKKLQEKE
VIMHDAINACIADPSKLNNVSFEEIKEALKKLSAGIPESVINVLESKAQEDPEDILNG
LTLQEMLSSNNDTTIDSLPSGKEQSSEDEEVTKAGIQEVEDKQLLALPVSSNEYALAL
SDDSEKECLVLSDGSEDEDDDNDSGIDSESEEGVVDQLLDSREDNLKTTEVNTVISLK
QEVIEETKKSIAAIAPTLNQGVQVVKNISKSILGARLDSSEALTAVAAGDEEESRIKR
GLWMRGMYGTNNHGRVNNMTGYRGINKGTTIGFDFEIDNNIVGIAYSNVYSVFKFKNS
KNNDKEFINSHVVSIYGQKELPKNFVAQALVSASKNFIKDKTTYSYGDTNIRSNVKHR
NHSYNAEALLNYNYLVKNNLVITPNIGLRYGKSRDGVYNEIGINVQEIALTMKENNIL
SGIIGTKVKVPLKDVLKFNNLGLIFQGAVEHNFKEKTQRINRVIKILDNTFKQYYLIP
KQPKISYNLGVGIMGSIKNTTISLDYNYYLNKHYRSHQGSVKLKVNL"
misc_feature 18316..19134
/locus_tag="A1E_00075"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 19274..19348
/locus_tag="A1E_t05684"
/db_xref="GeneID:5625867"
tRNA 19274..19348
/locus_tag="A1E_t05684"
/product="tRNA-Glu"
/db_xref="GeneID:5625867"
gene 19742..20143
/gene="lpxD"
/locus_tag="A1E_00080"
/db_xref="GeneID:5625868"
CDS 19742..20143
/gene="lpxD"
/locus_tag="A1E_00080"
/note="COG0658 Predicted membrane metal-binding protein"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="YP_001491754.1"
/db_xref="GI:157803205"
/db_xref="GeneID:5625868"
/translation="MDNFKSNVYIHGHKTDCDVRNLNITTYLSTMNFVNICNLHIHKA
YKLFPKITAAEYSSKINKAISIKNYIPLLSLTGDLLDSMLDSFDHETGKPIKYEKILD
WPCIEYDPKDDTLGKKAIDKVLNFIPVNSID"
gene complement(21912..22403)
/locus_tag="A1E_00085"
/db_xref="GeneID:5626412"
CDS complement(21912..22403)
/locus_tag="A1E_00085"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. Subunit B is part of the
membrane proton channel."
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit B"
/protein_id="YP_001491755.1"
/db_xref="GI:157803206"
/db_xref="GeneID:5626412"
/translation="MNFLDENFCLAVSFVIFVYLIYKPAKKAILNSLDVKILEIQERV
LKAKKLKEDAILLFEQTNAQIKQLDTLRSQMIEESNKVTKKIIQEKTKEIEEFLEHKK
SDAIKLIQHQKLITSKELQDEFCDEVIKLVSKYFQSVKLSESNIAKNLMDKSDFVHNN
KVT"
misc_feature complement(21927..22403)
/locus_tag="A1E_00085"
/note="F0F1-type ATP synthase, subunit b [Energy
production and conversion]; Region: AtpF; COG0711"
/db_xref="CDD:31055"
misc_feature complement(21942..22403)
/locus_tag="A1E_00085"
/note="F0F1 ATP synthase subunit B; Validated; Region:
PRK06568"
/db_xref="CDD:168615"
gene complement(22403..22870)
/locus_tag="A1E_00090"
/db_xref="GeneID:5626413"
CDS complement(22403..22870)
/locus_tag="A1E_00090"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. Subunit B' is part of the
membrane proton channel."
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit B'"
/protein_id="YP_001491756.1"
/db_xref="GI:157803207"
/db_xref="GeneID:5626413"
/translation="MPQFDIATYYSQIFWLIVTFGLLYIFIYKFIIPKAEEIFNNRQT
NIQDNITQADILTLEVEKLNKYYNEEVEKTNTAIDRLKKAKIYSLESEFLIKKKNLEQ
DLKNSINKNIEDINLAAKQFRTNKSEAIIKLAVNIIEKVAGTKADIDLLKKIK"
misc_feature complement(22406..22870)
/locus_tag="A1E_00090"
/note="F0F1 ATP synthase subunit B'; Validated; Region:
PRK06569"
/db_xref="CDD:180627"
misc_feature complement(22412..22834)
/locus_tag="A1E_00090"
/note="F0F1-type ATP synthase, subunit b [Energy
production and conversion]; Region: AtpF; COG0711"
/db_xref="CDD:31055"
gene complement(22888..23112)
/locus_tag="A1E_00095"
/db_xref="GeneID:5626414"
CDS complement(22888..23112)
/locus_tag="A1E_00095"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. Subunit C is part of the
membrane proton channel F0"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit C"
/protein_id="YP_001491757.1"
/db_xref="GI:157803208"
/db_xref="GeneID:5626414"
/translation="MDIVSLKFIGVGLMAIGMYGAALGVSNIFSSLLNAIARNPAAAE
NLQRMALIGAGLAEAIGLFSFVIAMLLIFS"
misc_feature complement(22891..23112)
/locus_tag="A1E_00095"
/note="F0F1 ATP synthase subunit C; Validated; Region:
PRK07558"
/db_xref="CDD:181027"
gene complement(23287..24015)
/locus_tag="A1E_00100"
/db_xref="GeneID:5626415"
CDS complement(23287..24015)
/locus_tag="A1E_00100"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. Subunit A is part of the
membrane proton channel F0"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit A"
/protein_id="YP_001491758.1"
/db_xref="GI:157803209"
/db_xref="GeneID:5626415"
/translation="MTLNPLVQFDIKKLIEIKIFGFDISFTNSSIYMLLASILALTYF
YLAFYNWKLVPSRLQVSAEIVYNLVADMLNQNIGAKGHKFIPLFFSLFIFILFCNLLG
MTPYSFTVTSHIIVTFALAILVFLTITIVGFVKHSLRFLTLFLPHGTPLWLAPLMIVI
ELFTYLARPISLSLRLAANMMAGHVLLKVIASFTISLMIYLKFISIPLMVILIGFEIF
IAVLQAYIFTILSCMYLNDAINLH"
misc_feature complement(23299..23946)
/locus_tag="A1E_00100"
/note="ATP synthase subunit 6 (eukaryotes),also subunit A
(prokaryotes); Region: ATP_synt_6_or_A; TIGR01131"
/db_xref="CDD:162216"
gene complement(24020..24283)
/locus_tag="A1E_00105"
/db_xref="GeneID:5626416"
CDS complement(24020..24283)
/locus_tag="A1E_00105"
/note="COG5336 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491759.1"
/db_xref="GI:157803210"
/db_xref="GeneID:5626416"
/translation="MDTEKLNNIKARIKDFKSARLFNPKVQQEISSFTIAIDLVSGTM
VGVASGIFTDKLFYSKPLFLIIFTIIGMIAGFNIIRQKVNNKK"
misc_feature complement(24023..24283)
/locus_tag="A1E_00105"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5336"
/db_xref="CDD:34913"
gene complement(24453..25277)
/locus_tag="A1E_00110"
/db_xref="GeneID:5626003"
CDS complement(24453..25277)
/locus_tag="A1E_00110"
/note="COG1651 Protein-disulfide isomerase"
/codon_start=1
/transl_table=11
/product="protein-disulfide isomerase"
/protein_id="YP_001491760.1"
/db_xref="GI:157803211"
/db_xref="GeneID:5626003"
/translation="MQSIFIVLIFLLFLSSYSEGKVQGKNHEEKQIIEQKTVQNNETS
QKINQEAINSENAAESIVPANDNNQTNEVSTPDSQEHKDPKIKPIKVTFKVDDNDMVL
GNKKSNVIVIEYFSPTCPHCAYYHQTIFPELKKKYIDTNKIAYVVREFIATKQDLDAA
ILARCKGDINSFVQFHNIILKQQDKWAYSNKYRELLTDIGKLGGISPEEYKQCLNSDK
ITETLIANTNLVAKTPKFIGTPSFFVNGVQTKNYSIDNIAKAVDKALDEQKEKAKK"
misc_feature complement(24480..25088)
/locus_tag="A1E_00110"
/note="Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones]; Region: DsbG;
COG1651"
/db_xref="CDD:31837"
misc_feature complement(24489..24992)
/locus_tag="A1E_00110"
/note="Thioredoxin; Region: Thioredoxin_4; pfam13462"
/db_xref="CDD:205640"
gene 25444..25971
/locus_tag="A1E_00115"
/db_xref="GeneID:5626004"
CDS 25444..25971
/locus_tag="A1E_00115"
/note="COG1329 Transcriptional regulators, similar to M.
xanthus CarD"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491761.1"
/db_xref="GI:157803212"
/db_xref="GeneID:5626004"
/translation="MANTTQSEHKTKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEI
KVYVISFAQDKMTLKVPVNRATIVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQ
EYEGKINSGNIVAIAEVLRDLHKNVDNDRSYSERTLYESALNRLAGELAILENIHPTE
AINKLVEVLREKLVA"
misc_feature 25474..25968
/locus_tag="A1E_00115"
/note="Transcriptional regulators, similar to M. xanthus
CarD [Transcription]; Region: COG1329"
/db_xref="CDD:31520"
gene complement(26180..27784)
/locus_tag="A1E_00120"
/db_xref="GeneID:5626005"
CDS complement(26180..27784)
/locus_tag="A1E_00120"
/EC_number="3.6.3.14"
/note="COG0500 SAM-dependent methyltransferases"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit A"
/protein_id="YP_001491762.1"
/db_xref="GI:157803213"
/db_xref="GeneID:5626005"
/translation="MTKQTNKISYDEVPYPPFTFSYTSPPYLRTIGKLFGLNPPSLET
AKILDIGCGVGVNLLNFAETYPKSNSLGIDLSKTQIELGKKIISDLKIKNVELNALSI
LDLNESYGKFDYIVCHGVYSWVPEEVQNKILEVCNKLLNPNGIAFVSYNTLPGWNMQR
TIREMMMFHSELFNNSHDKLQQARLLLKFINDSLESATTPYSRFLREETKLLSAYTDS
YVLHEYLGEINTGIYFNQFIEKAQRNHLNYLGDASLASMFIGNLPAQAAEKLQVIDDI
VRTEQYMDFITNRKFRSTLLCHKNIPINRKIEFNNLKEFYTSLNIKPVTLEKEVDLTN
EQENISFYYENLPNPLISSTSPIIKAILYVYAENISNPLSLEQVAKEAFKKLGKYRLQ
DFLAALEQHFIKFIFQGYLKIFETKPHTITTITEKPKTGEFARYQARQAHFNNATNVF
SITNRLNDMIGIALHEKYILEMLDGTHNINDIKKEILEKINSKLLTARDDKGQEVTDP
KLLKEFIDYIVTASLEKFRMNYLLVG"
misc_feature complement(<27335..27658)
/locus_tag="A1E_00120"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature complement(27335..27649)
/locus_tag="A1E_00120"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(27431..27433,27479..27487,27560..27565,
27617..27637))
/locus_tag="A1E_00120"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
misc_feature complement(26192..27034)
/locus_tag="A1E_00120"
/note="Predicted regulatory domain of a methyltransferase
[General function prediction only]; Region: COG4797"
/db_xref="CDD:34406"
gene complement(27939..29021)
/gene="recF"
/locus_tag="A1E_00125"
/db_xref="GeneID:5626006"
CDS complement(27939..29021)
/gene="recF"
/locus_tag="A1E_00125"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_001491763.1"
/db_xref="GI:157803214"
/db_xref="GeneID:5626006"
/translation="MKNIFLHSLILENYRNFKNLELKIDNTPIILIGENGSGKTNILE
AISLFYPGRGLRSAKLADICKTSEDHCSIKALLQSKLGLAEFTTQFKLSSNRRITEYN
ESKIANNELSKFTSMVWLTPQMEGIFTSGKVERRKFLDRIVYNFDPKHAELVGKYEYY
MHERNKILAEEIQDDNWLKIIEEKMADISNHIAVNRLKTLEFMQQTINNLENEFPKAD
LSIDGIVEQKILDGEENIVSVITAELYKTRNKDKLIGRTSFGVHKSDFLVKHKKKNIL
AKLCSTGEQKAILIAIILAEMNYAIKLTKIAPVLLLDEVFVHLDDKRRDYLTEFFTYL
NLQLWITTTNLESIENFASKAQLIKL"
misc_feature complement(27942..29009)
/gene="recF"
/locus_tag="A1E_00125"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature complement(<28449..29006)
/gene="recF"
/locus_tag="A1E_00125"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(28902..28925)
/gene="recF"
/locus_tag="A1E_00125"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(28656..28658,28899..28907,28911..28916))
/gene="recF"
/locus_tag="A1E_00125"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(28656..28667)
/gene="recF"
/locus_tag="A1E_00125"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(27948..>28244)
/gene="recF"
/locus_tag="A1E_00125"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(28155..28184)
/gene="recF"
/locus_tag="A1E_00125"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(28080..28097)
/gene="recF"
/locus_tag="A1E_00125"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(28062..28073)
/gene="recF"
/locus_tag="A1E_00125"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(27984..28004)
/gene="recF"
/locus_tag="A1E_00125"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(29046..29714)
/gene="recF"
/locus_tag="A1E_00130"
/db_xref="GeneID:5626007"
CDS complement(29046..29714)
/gene="recF"
/locus_tag="A1E_00130"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_001491764.1"
/db_xref="GI:157803215"
/db_xref="GeneID:5626007"
/translation="MTNNHFSEDTKKIANQIKDALMGISDDLVLESKEVEEIFEELSQ
NEKFEYEIEQMLAILNEQTMDLTQLQSRIILLIRKYLGKTKNLKLKMLKVDEKLINKN
VAEVSNYLMHQHSKIVRDANKNLAKPKDKLQGLTKQARIDLKRLLKSFAVYQIYMFMN
PKRIAGETKLMNFAYNMIRGGMKLAKKYEGGKEKDIKSYSPKLIKKLKKTYAGFKKSG
GISI"
gene complement(29838..29927)
/locus_tag="A1E_00135"
/db_xref="GeneID:5626208"
CDS complement(29838..29927)
/locus_tag="A1E_00135"
/note="COG1195 Recombinational DNA repair ATPase (RecF
pathway)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491765.1"
/db_xref="GI:157803216"
/db_xref="GeneID:5626208"
/translation="MIGEESEDKYHSWNIATFSKENVDFLGNY"
gene complement(31347..31916)
/locus_tag="A1E_00140"
/db_xref="GeneID:5626209"
CDS complement(31347..31916)
/locus_tag="A1E_00140"
/note="COG1678 Putative transcriptional regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491766.1"
/db_xref="GI:157803217"
/db_xref="GeneID:5626209"
/translation="MSDKIFHNLSGKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGL
IFNRLVNHIDLKSFFKIKNDEITNPVMVPIYLGGPVEHEKGFFLHSSDYNKNLLLDFH
NDLAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKSGQLEEELEKNLWLVMDCNKEFIF
ADNPESKWHNALKHLGIDEIHFSSQIGNA"
misc_feature complement(31350..31916)
/locus_tag="A1E_00140"
/note="Putative transcriptional regulator [Transcription];
Region: COG1678"
/db_xref="CDD:31864"
gene 31988..32626
/locus_tag="A1E_00145"
/db_xref="GeneID:5626210"
CDS 31988..32626
/locus_tag="A1E_00145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491767.1"
/db_xref="GI:157803218"
/db_xref="GeneID:5626210"
/translation="MITFFDVTIFAIITIFSFFGLYQGIIGFSTRILGFITSIMLAYF
LYPYISELIGKYMDNEVIRIIIAGVISYVISLILCVFIVYKFLTIISFMRNGFIDRFL
GLLVGFAIGVTISVVLFFITMIFTSENYFKSKSLKDFIVSSKQHKYSGVLKVSVTTDY
LDELSKNIIVIIPNETLKSIEIFENRDLNNFKNSLKKSNGSNDDEDVFSQEL"
misc_feature 31991..32545
/locus_tag="A1E_00145"
/note="Uncharacterized membrane protein, required for
colicin V production [General function prediction only];
Region: CvpA; COG1286"
/db_xref="CDD:31477"
misc_feature 32045..32386
/locus_tag="A1E_00145"
/note="Colicin V production protein; Region: Colicin_V;
pfam02674"
/db_xref="CDD:202343"
gene 33032..33145
/locus_tag="A1E_00150"
/db_xref="GeneID:5626211"
CDS 33032..33145
/locus_tag="A1E_00150"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491768.1"
/db_xref="GI:157803219"
/db_xref="GeneID:5626211"
/translation="MWNHGSLQHNGGNYAQQNGDNIILTENRQNINFDTKY"
gene complement(33425..34747)
/locus_tag="A1E_00155"
/db_xref="GeneID:5626212"
CDS complement(33425..34747)
/locus_tag="A1E_00155"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491769.1"
/db_xref="GI:157803220"
/db_xref="GeneID:5626212"
/translation="MTSIYHILEHVPAIYKQDMEIEYEHLAMQLIKSGKLRIDTDDCC
NFARFTDPALNISLMVSKEELTNPHLIPETTKLFQSLYRNSLSDQKIKSIFENLKKQI
QKLQPVKKEVTEMLARIFVQSAHPIVIRWLLLNKTEVFLTYSHNIGNMMDMVNWQRVG
ANSGMQSTNGKNVAIFVSCGGNPFAENNKDHPTYGNGFAAVARLQIIAAQELGHFADI
KRDDRGKQITRHSANFSGTKAKDKVRIARRNDIIHCHNLLYKLLKAGMKKQLEYEMKL
KFYNANKISGLKVYAIKFMIFIYKFRLLNYSSRHNLIFVKKFKTDKYMALMIDAMFKD
MQANLSPAADVYKNKNPEIEEAIACIEALARVPQQTIKWGYLTTKETMQDLYKIYYND
VIPSLITSYNAVTGEDYKRDFKKPKSNFFSKINIFSNKKLVLKPVREL"
misc_feature complement(33428..34747)
/locus_tag="A1E_00155"
/note="Protein of unknown function (DUF2748); Region:
DUF2748; pfam10871"
/db_xref="CDD:151320"
gene complement(34766..34900)
/locus_tag="A1E_00160"
/db_xref="GeneID:5626743"
CDS complement(34766..34900)
/locus_tag="A1E_00160"
/note="COG1286 Uncharacterized membrane protein, required
for colicin V production"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491770.1"
/db_xref="GI:157803221"
/db_xref="GeneID:5626743"
/translation="MLKFLQIILEEVPEIEMVFEAVTLSFNINSSHSRDDVEIAVVNY
"
gene 36670..39246
/locus_tag="A1E_00165"
/db_xref="GeneID:5626744"
CDS 36670..39246
/locus_tag="A1E_00165"
/codon_start=1
/transl_table=11
/product="clpB protein"
/protein_id="YP_001491771.1"
/db_xref="GI:157803222"
/db_xref="GeneID:5626744"
/translation="MNIDKFTAHAKLVIASSQSLAAKNDHQQILSLHLLSSLLSEETG
IIRSIINNVGSDLNIIHTQVKTELNKIPQVQVAGGGQVYSSAEALKALEKASSLAKDS
GDSFVTIERILEALTYDNTIAGKILTNNGVSSKKVAASILQMRKGKKADTASAENSYD
ALKKYGRDVTELAERCTLDPIIGRDEEIRRTVQVLSRRMKNNPVLIGEPGVGKTAIIE
GLAQRIFSKDVPESLMNCRIIELDMGALIAGAKYRGEFEERLKAVLSEIKESSGEIIL
FIDELHLLVGTGKTDGAMDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAALARRF
QPVYVSEPTVEDTISILRGIKEKYELHHAVQISDSAIVAAAMLSNRYITDRYLPDKAI
DLIDEACSRMKIELSSKPEELDELDRRIIQIKIELAALKKENEDHSKKKITHLTEELK
KLESKSYDMNAKWQAEKSKLQQAQKLKEELERARIDLERAERDANLAKASELKYGIIP
EIMKKIQEAESMDHKGLLKEIVSDSDIASIISRITGIPIDTMLSSERERLLVMEQKLR
ESVIGQDKAIKSVSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTELTKALAAFLFDD
RNAILRVDMSEYMEKHTISRLIGAPPGYIGYDQGGVLTEAVRRRPYQVILFDEVEKAH
TDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVNQKEGEDSDKVKDEV
MEYVRAVFKPEFLNRLDEIILFHRLSRNNIHDIVKIQLESLKKILLAQNITLEFDESA
LNYLAEKGYDPSFGARPLKRLIQREIQNNLAKLILAGAISSGKTVKISREKEELRIKL
VN"
misc_feature 36685..39225
/locus_tag="A1E_00165"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:163223"
misc_feature 36976..37107
/locus_tag="A1E_00165"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 37213..37674
/locus_tag="A1E_00165"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 37288..37311
/locus_tag="A1E_00165"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(37291..37314,37504..37506,37615..37617)
/locus_tag="A1E_00165"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 37492..37509
/locus_tag="A1E_00165"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 37666..37668
/locus_tag="A1E_00165"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature <37912..>38157
/locus_tag="A1E_00165"
/note="Protein of unknown function (DUF1640); Region:
DUF1640; pfam07798"
/db_xref="CDD:191851"
misc_feature 38377..38823
/locus_tag="A1E_00165"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 38479..38502
/locus_tag="A1E_00165"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(38482..38505,38695..38697,38821..38823)
/locus_tag="A1E_00165"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 38683..38700
/locus_tag="A1E_00165"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 38962..39204
/locus_tag="A1E_00165"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene complement(39386..39874)
/locus_tag="A1E_00170"
/db_xref="GeneID:5626745"
CDS complement(39386..39874)
/locus_tag="A1E_00170"
/note="COG0542 ATPases with chaperone activity,
ATP-binding subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491772.1"
/db_xref="GI:157803223"
/db_xref="GeneID:5626745"
/translation="MSNNNYENIYKAFNCFSEATNSAYSAVNNFLELPNVFRKYPTII
SLIFSKTAKLDSNITNIIKNSVIIYEISTTLIGAVNTFYNDKKLVDKILKDGQNAVNK
LIETTNYLSPIVTDITNSYLVDLYKEEKTPLFDLQIPNSTSSDYYKFSGEVINSVEIE
SY"
gene complement(40067..41095)
/locus_tag="A1E_00175"
/db_xref="GeneID:5626746"
CDS complement(40067..41095)
/locus_tag="A1E_00175"
/EC_number="3.4.24.57"
/note="in most organisms, only the N-terminal domain is
present in a single polypeptide; in some archaea this
domain is fused to a kinase domain; this gene is essential
for growth in Escherichia coli and Bacillus subtilis; the
secreted glycoprotease from Pasteurella haemolytica showed
specificity for O-sialoglycosylated proteins; the
Pyrococcus structure shows DNA-binding properties,
iron-binding, ATP-binding, and AP endonuclease activity"
/codon_start=1
/transl_table=11
/product="putative DNA-binding/iron metalloprotein/AP
endonuclease"
/protein_id="YP_001491773.1"
/db_xref="GI:157803224"
/db_xref="GeneID:5626746"
/translation="MTKILGIESSCDDTAVSIITENREILSNIIISQNTEHAVFGGVV
PEIAARSHLSNLDKALKSVLKESDTKLTEISAIAATSGPGLIGGVIVGSMFARSLSSA
LKKPFIAINHLEGHALTARLTDNIPYPYLLLLASGGHCQFVAILGLRKYKILGSTIDD
AVGEAFDKVAKMLNLGFPGGSEIETRAKFGNSHKYKFPKPIINSGNCNMSFSGLKTAV
RTLIMSLKEINDTVVNDIAASFQFTIGEILSSKLQDAIRAYEQMINNCDKKNIVIAGG
VAANKYLQEILSSGAKTYGYQLIYPPIHLCTDNAAMIAYAGLERYNNKLFTPLNFCPK
ARWNLEEI"
misc_feature complement(40070..41092)
/locus_tag="A1E_00175"
/note="UGMP family protein; Validated; Region: PRK09604"
/db_xref="CDD:181984"
misc_feature complement(40508..41089)
/locus_tag="A1E_00175"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene complement(41107..42300)
/locus_tag="A1E_00180"
/db_xref="GeneID:5626747"
CDS complement(41107..42300)
/locus_tag="A1E_00180"
/note="COG1398 Fatty-acid desaturase"
/codon_start=1
/transl_table=11
/product="O-sialoglycoprotein endopeptidase"
/protein_id="YP_001491774.1"
/db_xref="GI:157803225"
/db_xref="GeneID:5626747"
/translation="MLSKLNKPALFSLIFYPIFIISLIVKYLFDYGIGLAEVIFIVAS
YYINNITVGIGLHRLWSHNSYKINKYAEFILVMLSAGTLQGPALSWASNHYKHHAFTD
KDQDPHTPLKFDNKFLGFMWSHIGWMLVGNGSYKSIDRITWTKHGKNNLLKWQLKYYW
QIAAFMNIVVPLFIGYLVGGTMQSAYAGFLFMGLGRFLQQQATFCVNSLCHFIGSKKY
YKGTAGDIWWMSLFLLGENWHNYHHAFPSDYRNGAKWYHFDVHKWIIFLMSKVGLASE
LERTTKVRIQAKMQETLSYLSEKQKQKLSLMQTKIDQLLENLCLKIKELEESSITIKA
QFKKSFVEIQESLKNLAEQISSATQITEKSSEKLLKIVNKKIIDAEQSIYKLYNQLNT
FKVSN"
misc_feature complement(<41860..42201)
/locus_tag="A1E_00180"
/note="The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like
CD includes the delta-9 and delta-11 acyl CoA desaturases
found in various eukaryotes including vertebrates,
insects, higher plants, and fungi. The delta-9 acyl-lipid
desaturases are found in a wide...; Region:
Delta9-FADS-like; cd03505"
/db_xref="CDD:58171"
misc_feature complement(41512..42153)
/locus_tag="A1E_00180"
/note="Fatty acid desaturase; Region: FA_desaturase;
pfam00487"
/db_xref="CDD:201259"
misc_feature complement(order(42007..42012,42019..42021,42115..42117,
42130..42132))
/locus_tag="A1E_00180"
/note="Di-iron ligands [ion binding]; other site"
/db_xref="CDD:58171"
misc_feature complement(41470..>41751)
/locus_tag="A1E_00180"
/note="The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like
CD includes the delta-9 and delta-11 acyl CoA desaturases
found in various eukaryotes including vertebrates,
insects, higher plants, and fungi. The delta-9 acyl-lipid
desaturases are found in a wide...; Region:
Delta9-FADS-like; cd03505"
/db_xref="CDD:58171"
misc_feature complement(<41110..41457)
/locus_tag="A1E_00180"
/note="Protein of unknown function (DUF713); Region:
DUF713; pfam05218"
/db_xref="CDD:203210"
gene 43248..43613
/gene="rpsF"
/locus_tag="A1E_00185"
/db_xref="GeneID:5625945"
CDS 43248..43613
/gene="rpsF"
/locus_tag="A1E_00185"
/note="binds cooperatively with S18 to the S15-16S
complex, allowing platform assembly to continue with S11
and S21"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_001491775.1"
/db_xref="GI:157803226"
/db_xref="GeneID:5625945"
/translation="MSFYESVFIIRQDISLNDIDKIVDDFAKIIKDNNGTIIKKEYWG
LRTLAYKIGSNKKGHYYFLGLDITPNVKEEIERKMKLNENIIRFLTIKADAISSEPSP
MLKNQSTENNLVIDVTINN"
misc_feature 43248..43571
/gene="rpsF"
/locus_tag="A1E_00185"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 43638..43925
/gene="rpsR"
/locus_tag="A1E_00190"
/db_xref="GeneID:5625946"
CDS 43638..43925
/gene="rpsR"
/locus_tag="A1E_00190"
/note="binds as a heterodimer with protein S6 to the
central domain of the 16S rRNA; helps stabilize the
platform of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_001491776.1"
/db_xref="GI:157803227"
/db_xref="GeneID:5625946"
/translation="MLKSNNTSEATTRKVGDKTAKKVFFRRRKGCPLSVPNAPVIDYK
NPELLIKFVSEGGRMLPSRITNVCAKKQRKLNNAIKIARILALLPFVFQAK"
misc_feature 43683..43910
/gene="rpsR"
/locus_tag="A1E_00190"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene 43937..44452
/gene="rplI"
/locus_tag="A1E_00195"
/db_xref="GeneID:5625947"
CDS 43937..44452
/gene="rplI"
/locus_tag="A1E_00195"
/note="in Escherichia coli this protein is wrapped around
the base of the L1 stalk"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_001491777.1"
/db_xref="GI:157803228"
/db_xref="GeneID:5625947"
/translation="MEIILIKPVRKLGKIGDILKVADGFGRNYLLPQKLAIRATEPNK
ELIVKQKHEFEAKDKQIREEVEKINALIKEQKLVFIRQTSDDGKLFGSITNKEIADKL
SENVSYNIFHSNIILDKKIKSTGIYTVEIRLHAELNAIVTVIVARSESEVQDYLREQK
NESLETLAESA"
misc_feature 43937..44380
/gene="rplI"
/locus_tag="A1E_00195"
/note="50S ribosomal protein L9; Reviewed; Region: rplI;
PRK00137"
/db_xref="CDD:178893"
misc_feature 43937..44077
/gene="rplI"
/locus_tag="A1E_00195"
/note="Ribosomal protein L9, N-terminal domain; Region:
Ribosomal_L9_N; pfam01281"
/db_xref="CDD:201708"
misc_feature 44120..44380
/gene="rplI"
/locus_tag="A1E_00195"
/note="Ribosomal protein L9, C-terminal domain; Region:
Ribosomal_L9_C; pfam03948"
/db_xref="CDD:146531"
gene 44961..46259
/locus_tag="A1E_00200"
/db_xref="GeneID:5625948"
CDS 44961..46259
/locus_tag="A1E_00200"
/note="COG0037 Predicted ATPase of the PP-loop superfamily
implicated in cell cycle control"
/codon_start=1
/transl_table=11
/product="tRNA(Ile)-lysidine synthetase TilS"
/protein_id="YP_001491778.1"
/db_xref="GI:157803229"
/db_xref="GeneID:5625948"
/translation="MASIYEKFEYNINNLIGDFALSRIAVAVSGGSDSVALLYLTNVW
AKKNNIELFVISVDHNLREQSKQETHYIQNISNSLNRKHYNLSFDHQNNFSNLQERAR
EGRYNLMTNLCLELDILALLTAHHEDDYVENFCLRLERNSGIFGLSSSNINWHNNIQI
IRPLYNIPKSELVEYLVNHNIKWFEDESNLSDKYKRNLVRQKLAKEEDYIKADIILQQ
LKINNLLDDKFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQLINFLLIIIS
GQSRVARFYSVSPILELITQDINFKNTLHGCVIKRIQNELLIYREFGKKLPKSQILLD
KSIIWDSRFHIIKNQETPNCFVTHLSLEDYKTIKKQLDLEPLKNLSCKNHNAILFTLP
VVKILEKVIAIPHISYYDHDMRNFGVSFAPNFVSRFTHFC"
misc_feature 44970..>45587
/locus_tag="A1E_00200"
/note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning]; Region:
MesJ; COG0037"
/db_xref="CDD:30386"
misc_feature 45027..45569
/locus_tag="A1E_00200"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:30179"
misc_feature order(45039..45047,45051..45062,45126..45128,45132..45134)
/locus_tag="A1E_00200"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30179"
gene 46356..48266
/gene="rplI"
/locus_tag="A1E_00205"
/db_xref="GeneID:5625949"
CDS 46356..48266
/gene="rplI"
/locus_tag="A1E_00205"
/note="COG0465 ATP-dependent Zn proteases"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_001491779.1"
/db_xref="GI:157803230"
/db_xref="GeneID:5625949"
/translation="MNNQGRSILVWAVLFVFVILLFNVFQSDGLLGGRNNITFSDFLT
RVDEKTVNSVKIQGRVIEGTSNDGSTFSTYSPDYPDLVNRLTSNDVNIEVVPLETRMN
TFLGFLISWFPMLLLIGVWVFFMRQMHGGGKVLGFGKSKARLLLSDKGPKITFKDVAG
IDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFF
SISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDERE
QTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQI
LKVHLKKIKYNNTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEA
KDKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMV
QRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMV
TKAGLSDLIGPIFHGSSSDDMYGRQSNNETSEATAELIDTEVKRIIMQGYEFAKDILT
KHIDQLHTLANALIEYETLSGQQIKNLLSGRALDSEEENKFPFNDSSTIKIDKEKSPE
KAKTTKAKKEST"
misc_feature <46449..46643
/gene="rplI"
/locus_tag="A1E_00205"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:203464"
misc_feature 46662..48140
/gene="rplI"
/locus_tag="A1E_00205"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:162266"
misc_feature 46830..47318
/gene="rplI"
/locus_tag="A1E_00205"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 46941..46964
/gene="rplI"
/locus_tag="A1E_00205"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(46944..46967,47118..47120,47259..47261)
/gene="rplI"
/locus_tag="A1E_00205"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 47106..47123
/gene="rplI"
/locus_tag="A1E_00205"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 47301..47303
/gene="rplI"
/locus_tag="A1E_00205"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 47508..48134
/gene="rplI"
/locus_tag="A1E_00205"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene 48267..49052
/gene="sdhB"
/locus_tag="A1E_00210"
/db_xref="GeneID:5626180"
CDS 48267..49052
/gene="sdhB"
/locus_tag="A1E_00210"
/note="part of four member succinate dehydrogenase enzyme
complex that forms a trimeric complex (trimer of
tetramers); SdhA/B are the catalytic subcomplex and can
exhibit succinate dehydrogenase activity in the absence of
SdhC/D which are the membrane components and form
cytochrome b556; SdhC binds ubiquinone; oxidizes succinate
to fumarate while reducing ubiquinone to ubiquinol; the
catalytic subunits are similar to fumarate reductase"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase iron-sulfur subunit"
/protein_id="YP_001491780.1"
/db_xref="GI:157803231"
/db_xref="GeneID:5626180"
/translation="MAELRLPPNSVVEKGREHKENEEMLRPRKIKIYRYNPDLDENPT
IDSFEIDLSKTGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIK
PIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPAPSNSERLQSIK
DRENLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIVDSRDDHTGERLEA
LEDPFKLYRCHTIMNCTKTCPKSLNPAKAIGEIKSLITERRGM"
misc_feature 48351..49043
/gene="sdhB"
/locus_tag="A1E_00210"
/note="succinate dehydrogenase iron-sulfur subunit;
Reviewed; Region: sdhB; PRK05950"
/db_xref="CDD:180322"
misc_feature 48351..48665
/gene="sdhB"
/locus_tag="A1E_00210"
/note="2Fe-2S iron-sulfur cluster binding domain; Region:
Fer2_3; pfam13085"
/db_xref="CDD:205266"
gene complement(50050..51126)
/gene="sdhB"
/locus_tag="A1E_00215"
/db_xref="GeneID:5626181"
CDS complement(50050..51126)
/gene="sdhB"
/locus_tag="A1E_00215"
/EC_number="1.3.99.1"
/note="COG1565 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase iron-sulfur subunit"
/protein_id="YP_001491781.1"
/db_xref="GI:157803232"
/db_xref="GeneID:5626181"
/translation="MSIDSKIRQLINQNGYITCDVLIQEILYSNPASYYRQTKSLASE
GDFITAPEVSQLFGEIIGLWCIKEWQRIGCPKSLSLVELGPGRGLLMRDLLRTAKLVP
EFYKALSIELIEINQNFIAHQKSNLQDINLPIKHLSFIEDIPKKPTIIVANEFFDAMP
IKQYIKVKELWYERIFVVQPVDGRIKYDKISVNKQLQEYLLQTHIEAKDGAVLEESYK
SIEIIKFIAQHLKKLSGSCLIIDYGYDIALSNRNRYQYNPTLQAVKNHKYCPILENCG
KADLSAHVDFYTLKTVAKNSKINVINTILQRDFLIENGILLRSKTLQDKLNNEQAQII
EKQVERLISPKQMGVLFKVLQIMN"
misc_feature complement(50053..51126)
/gene="sdhB"
/locus_tag="A1E_00215"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1565"
/db_xref="CDD:31753"
misc_feature complement(50242..50946)
/gene="sdhB"
/locus_tag="A1E_00215"
/note="Putative S-adenosyl-L-methionine-dependent
methyltransferase; Region: Methyltransf_28; pfam02636"
/db_xref="CDD:202326"
gene complement(51105..51884)
/locus_tag="A1E_00220"
/db_xref="GeneID:5626182"
CDS complement(51105..51884)
/locus_tag="A1E_00220"
/note="transfers the N-acyl diglyceride moiety to the
prospective N-terminal cysteine in prolipoprotein"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_001491782.1"
/db_xref="GI:157803233"
/db_xref="GeneID:5626182"
/translation="MIFPNINPVIFSIGPFAISWYSLSYVIGILLGWFYANKIIEKFK
PQITKKNLEDFITYAVIGIIVGGRLGFVLLYNPSRYFSNPIDILKTYQGGMSFHGGAL
GVIIAAYLFCRKYKVNFLSLTDIIATVVPIGLFLGRIANFINGELYGRITNSSFGIIF
PNSDLSPRHPSQLYEAFFEGLVLFCILAYATFKHKTLEKRALNLGLFLTFYALFRITI
EIFREPDMQIGFILDSLTMGQILSIPMLILGSSLICQSTLK"
misc_feature complement(51126..51884)
/locus_tag="A1E_00220"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK00052"
/db_xref="CDD:178826"
gene 52158..53309
/locus_tag="A1E_00225"
/db_xref="GeneID:5626183"
CDS 52158..53309
/locus_tag="A1E_00225"
/note="COG0668 Small-conductance mechanosensitive channel"
/codon_start=1
/transl_table=11
/product="putative carbamate kinase"
/protein_id="YP_001491783.1"
/db_xref="GI:157803234"
/db_xref="GeneID:5626183"
/translation="MDLYYISSTELVLLFVMLVTLIPVIFLIKRLIFIPVKNYLTRHH
YDDYERIIKKYPIFRYLLHTLLAFYFVCWGNIFHPNSFKAHVFLGIKDTIVILYTSIS
MTMLLLTLIDAFADLYHNRIKTVKNVPLSLYFQILKIIVMVIAVMITISYILNISLST
FLTSLGAATALLTFVFKDTVLGLLASLQLTTQEIINIGDWVRIGKIEGIVEKITISVV
TIRNFDQSISTVPTYSILNSTVTNYRGISESGARRIKRVFNINMATIHFCDATILKEL
KKSPYLSKDIINKITVDKEEKDLTNIKLFKLYVQEYLKNNPAVYTEGFTFLVRQLEPT
IYGLPIEIYIFVKEVNLVGYENIQDDISEHLISILSEFKLKIFQNVAVV"
misc_feature <52680..53294
/locus_tag="A1E_00225"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature 52680..53261
/locus_tag="A1E_00225"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 53499..55181
/locus_tag="A1E_00230"
/db_xref="GeneID:5626184"
CDS 53499..55181
/locus_tag="A1E_00230"
/note="functions to insert inner membrane proteins into
the IM in Escherichia coli; interacts with transmembrane
segments; functions in both Sec-dependent and -independent
membrane insertion; similar to Oxa1p in mitochondria"
/codon_start=1
/transl_table=11
/product="putative inner membrane protein translocase
component YidC"
/protein_id="YP_001491784.1"
/db_xref="GI:157803235"
/db_xref="GeneID:5626184"
/translation="MNNNIMNLIAAIVLSLSIIFGWQYFVVKPEHKKQQQQIAMQKAE
NLKKQKLKALIKPASDLVVQEANQVQRIKIESESLTGSISLKGLRFDDLILKKYKQDL
SKNSTEVRLFSPANTENAYFAEIGLVSNLSSVKLPNNDTIWNSDGEILSPEKPVNLFW
VNEDGVKFLVTITLDENYLFTVEQTIVNNSDKELPVQSYGLINRKYIAVEKAVNILHQ
GPIGCINENLKEYSYDDIKDKKSEKFVASKVDWIGMTDKYWLSSLIPDKSSNYSSNFN
YALTQGVERYQVDFISPVQIIKSGENFSITSRIFAGAKKVDLLDKYEKQYGIKLFDRA
IDFGWFYIITKPVFYAMNFFYGYVGNFGISILIVTVIIKLLMFTLANKSYCSMKKMKN
LQPEIDRIKNLYGDDKARLNQEIMALYKKEKVNPVAGCLPILVQIPVFFSIYKVLYVT
IEMRQAPFYGWIKDLSAPDPTTIFNLFGFLPFSPPSFLMIGAWPILMAITMFLQQRMS
PEPADPVQAQVMKFMPLIFLVMFSSFPVGLLIYWSWNNILSIIQQYYINKFN"
misc_feature 53688..55178
/locus_tag="A1E_00230"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:179279"
misc_feature 54576..55172
/locus_tag="A1E_00230"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:211846"
gene 55181..55726
/locus_tag="A1E_00235"
/db_xref="GeneID:5626354"
CDS 55181..55726
/locus_tag="A1E_00235"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase"
/protein_id="YP_001491785.1"
/db_xref="GI:157803236"
/db_xref="GeneID:5626354"
/translation="MRIDKNLPNYLTVARVMVIPIIILAFYINNSLARTFGALLFVLA
SITDFFDGYIARKYNLVTSFGKMFDPIADKLLVGCVIIMLLKKDNVDEIPCLLILARE
FLVSGLREFLALVKVSVPVSRLAKVKTFLQMFALSILILGSKGSGIIYLDIVGEIILW
IAAFLTIITGYSYFKACKKYF"
misc_feature 55193..55702
/locus_tag="A1E_00235"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 56122..56274
/locus_tag="A1E_00240"
/db_xref="GeneID:5626355"
CDS 56122..56274
/locus_tag="A1E_00240"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491786.1"
/db_xref="GI:157803237"
/db_xref="GeneID:5626355"
/translation="MIIENAELIKYRSGRVNIKKKETAAYAEILNKARNNIIKEKFTK
LKMYTL"
gene complement(56527..56925)
/locus_tag="A1E_00245"
/db_xref="GeneID:5626356"
CDS complement(56527..56925)
/locus_tag="A1E_00245"
/note="COG0558 Phosphatidylglycerophosphate synthase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491787.1"
/db_xref="GI:157803238"
/db_xref="GeneID:5626356"
/translation="MTRKIIKNIIFGIAFLLSTISFANSVTSNGSKKDAAKTNDVTTQ
KIIDAFSAYAGTIKPEVREEIQKYRVKIVNINKEKRKLYNSLSKEAQNFLAEQQKYKQ
KLSLSKLTVENNDRKNNAVNSNDKQDKDTK"
gene 58011..59516
/locus_tag="A1E_00250"
/db_xref="GeneID:5626357"
CDS 58011..59516
/locus_tag="A1E_00250"
/note="COG3202 ATP/ADP translocase"
/codon_start=1
/transl_table=11
/product="ADP,ATP carrier protein"
/protein_id="YP_001491788.1"
/db_xref="GI:157803239"
/db_xref="GeneID:5626357"
/translation="MSTTKSDNYLSELRKIIWPIERYENKKFLPMAFMMFCILLNYST
LRSIKDGFVVTDIGAEAISFLKTYIVLPSAVIAMVIYVKLCDILKQENVFYVITSFFL
GYFVLFAFVLYPYPDLVHPDPETIEHLSLAYPNFKWFIRIVGKWSFASFYTMAELWGT
MILSLLFWQFANQITKTDEAKRFYSMFGLLANLALPVASVIIGYFLHEETQIVAEHLK
FVPLFIIMITSSFSIILTYRWMNKNVLTDPLLYDPALVKEKKSKAKMSLLDSFKMIFM
SKYVGYIALLLIAYGVSVNLVEGVWKSKVKELYPTKEAYTMYMGRFQFYQGWVAIAFM
IVGSNILRKVSWLIAAMITPLMMLLTGAAFFAFIFFDSVIAMYLTGILASGPLALSVM
IGMIQNVLSKGVKYSLFDATKNMAYIPLDKDLRVKGQAAVEVIGGRFGKSGGAIIQST
FFILFPAFGFVEATPYFASIFFVIVILWIYAVRSLNKEYQVLVNKTDNRIC"
misc_feature 58017..59477
/locus_tag="A1E_00250"
/note="TLC ATP/ADP transporter; Region: TLC; pfam03219"
/db_xref="CDD:146045"
misc_feature 58068..59477
/locus_tag="A1E_00250"
/note="ADP/ATP carrier protein family; Region: AAA;
TIGR00769"
/db_xref="CDD:162032"
gene 59583..60872
/locus_tag="A1E_00255"
/db_xref="GeneID:5626358"
CDS 59583..60872
/locus_tag="A1E_00255"
/note="COG2271 Sugar phosphate permease"
/codon_start=1
/transl_table=11
/product="putative inner membrane protein translocase
component YidC"
/protein_id="YP_001491789.1"
/db_xref="GI:157803240"
/db_xref="GeneID:5626358"
/translation="MTNTKSKIKIPRSPYVKKYNSWRVRILYSIIIGYATFYFCRQNF
NIATPAIRAYFGVTKTQIGWILTASSIMYGVSKVCNGFISDKVNARIFMVLGLLLVGI
ITILIGLSDFLWLIGILWIASNWFQSMGWPPATKMLTHWFAPKELGTKWAMGATSNQI
GGALAMVSCGYLIDKFDWRAAFFVPGVVACIVSLFLYNRLRSSPKEVGLSTVEEYKEY
PPESIGDYEKLLTTQLLKMVFCNKLIWYVCLANMFVYIIRSGVIYWAPTFLRDLRNIS
LANAGLQIGLYEMIGIPGALIAGVLSDKLFQGRRGPVAAICMISLSLLLVLFWKIPVQ
SELLSIVILSLIGFFVSGPQLLVGIAAADFSSRQAVGTANGLSGLFGYLGAAIAGVGV
GWISDNYGWNGVFTFFSVSALLGGGLFTLTWNRSAKK"
misc_feature 59583..60869
/locus_tag="A1E_00255"
/note="Sugar phosphate permease [Carbohydrate transport
and metabolism]; Region: UhpC; COG2271"
/db_xref="CDD:32452"
misc_feature 59661..60851
/locus_tag="A1E_00255"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(59703..59705,59712..59720,59724..59729,59778..59780,
59787..59792,59799..59801,59811..59816,59820..59825,
59961..59966,59973..59978,59985..59990,59997..59999,
60033..60038,60045..60050,60066..60068,60345..60347,
60354..60359,60366..60371,60378..60380,60420..60422,
60432..60434,60444..60446,60453..60455,60465..60467,
60621..60623,60630..60635,60642..60644,60654..60659,
60666..60668,60699..60704,60711..60716,60723..60728,
60735..60737)
/locus_tag="A1E_00255"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 60902..61324
/gene="ndk"
/locus_tag="A1E_00260"
/db_xref="GeneID:5626094"
CDS 60902..61324
/gene="ndk"
/locus_tag="A1E_00260"
/EC_number="2.7.4.6"
/note="catalyzes the formation of nucleoside triphosphate
from ATP and nucleoside diphosphate"
/codon_start=1
/transl_table=11
/product="nucleoside diphosphate kinase"
/protein_id="YP_001491790.1"
/db_xref="GI:157803241"
/db_xref="GeneID:5626094"
/translation="MTIQYTFSMIKPDAIKRNKIGQINTYLENAGLKIVAQKMKYLTK
YEAECFYDEHRARPFFNSLVEYITSGAVVLQVLKGTDAITLNRKIMGATNPDEAEAGT
IRKDFGESIEANSIHGSDSQNSAKREIEFFFNKSEIIE"
misc_feature 60911..61300
/gene="ndk"
/locus_tag="A1E_00260"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:58528"
misc_feature order(60932..60934,61052..61054,61076..61078,61160..61162,
61178..61180,61211..61213,61241..61243,61250..61252,
61256..61261,61283..61285)
/gene="ndk"
/locus_tag="A1E_00260"
/note="active site"
/db_xref="CDD:58528"
misc_feature order(60944..60946,60959..60967,60974..60976,60983..60985,
61010..61018)
/gene="ndk"
/locus_tag="A1E_00260"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:58528"
gene 61328..63202
/locus_tag="A1E_00265"
/db_xref="GeneID:5626095"
CDS 61328..63202
/locus_tag="A1E_00265"
/note="GidA; glucose-inhibited cell division protein A;
involved in the 5-carboxymethylaminomethyl modification
(mnm(5)s(2)U) of the wobble uridine base in some tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA"
/protein_id="YP_001491791.1"
/db_xref="GI:157803242"
/db_xref="GeneID:5626095"
/translation="MLKYDVIVIGGGHAGVEAAAASARLGVPTLLITLKPGNLGEMSC
NPAIGGIAKGILVKEIDALDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYK
KAMYQILTNYPNLNILYGKVEDIEIKSSKVKAVVLNDGSKIPCQKIILTTGSFLSGLI
HIGSTKIPAGRVDEEASYGLSNTLKRVGFKIARLKTGTPPRIDGLTIDYSKTVLQPGD
KTPRPFSALTNIVDVPQINCFITKTTSETHDIIRENLDKSAMYSGQIEAIGPRYCPSI
EDKIVRFSTKSEHRIFLEPEGLDDYTIYPNGISTSLPEEVQCKLIKTIPGLEKATILR
PGYAIEYDYVDPREISITLETKKIMGLYFAGQINGTTGYEEAAGQGIVAGINAALAVK
NQPPFILTRANSYIGVMIDDLTIFGTKEPYRMFTSRAEYRLSLRADNADLRLTELGIN
IGVVSKKRKEIFKKKCYNIEKTRNLLKTLSFTTSKLVKIGVQVAQDGTYKTVLDLFKI
PNFTIEQAIKIFPKLQEINSNILQLLYIEAKYASYLAKQQADINLFQNEEIQLIPKNI
DYFKIPSISLEIREKLSYYKPTTIGIARRIPGITPAAITAIIIYLKTKYNDGSFISNN
"
misc_feature 61328..63184
/locus_tag="A1E_00265"
/note="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated; Region: PRK05192"
/db_xref="CDD:179960"
misc_feature <62276..62569
/locus_tag="A1E_00265"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 62942..>63112
/locus_tag="A1E_00265"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene 63722..64489
/locus_tag="A1E_00270"
/db_xref="GeneID:5626096"
CDS 63722..64489
/locus_tag="A1E_00270"
/note="COG1192 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="soj protein"
/protein_id="YP_001491792.1"
/db_xref="GI:157803243"
/db_xref="GeneID:5626096"
/translation="MKVIAIVNQKGGVAKTTTTVNLATAFAALNKKVLVIDLDPQGNS
STGFGISQQQRKNTIYQVLINLIELKDAIIATNIPNLEIITSNTNLSAAELDLTKLKD
REYILMKLLKEIKILYNYIIIDCPPSLNLLTVNALVASDEVLIPMQCDFYSLEGLSHL
LKTIKIVEKKLNPKIKIVGILFTMYDKRNRLTEQVEDDVRKCLGALVFKTVIPRNIKL
SEAPSYGKPAIIYDYKCSGAVAYMELTKEILERYGEK"
misc_feature 63722..64486
/locus_tag="A1E_00270"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Soj;
COG1192"
/db_xref="CDD:31385"
misc_feature 63728..>63844
/locus_tag="A1E_00270"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 63749..63769
/locus_tag="A1E_00270"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature 63767..63769
/locus_tag="A1E_00270"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
misc_feature <64073..64270
/locus_tag="A1E_00270"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 64091..64093
/locus_tag="A1E_00270"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 64476..65336
/locus_tag="A1E_00275"
/db_xref="GeneID:5626097"
CDS 64476..65336
/locus_tag="A1E_00275"
/note="COG1475 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA"
/protein_id="YP_001491793.1"
/db_xref="GI:157803244"
/db_xref="GeneID:5626097"
/translation="MAKNKGLGRGLSSLLGEEVISIESEIIQIINIDKIRPNENQPRK
NFEYDKIKELADSILNNGLLQPIIVDNNFQIIAGERRWRACKLAKVLEIPVIIKNLDA
KESVEIALIENIQRTDLTVMEEARGFKYLVDNFNYTVEKLAERLGKSRSHIANLLRLN
NLPQSIQDKVNENILSMGQARCLINHEHAEAIADYIINNNLNVRQTEKLVRQWYKNDY
TKFPKNNNKVGKPFLKDSTTDNDLELLAKALSEKFGIKITIENCSLGGKLIFHYKDLK
ELDLILLQLN"
misc_feature 64581..65066
/locus_tag="A1E_00275"
/note="ParB-like partition proteins; Region: parB_part;
TIGR00180"
/db_xref="CDD:161748"
misc_feature 64581..64817
/locus_tag="A1E_00275"
/note="ParB-like nuclease domain; Region: ParB;
smart00470"
/db_xref="CDD:197744"
gene 65627..67294
/locus_tag="A1E_00280"
/db_xref="GeneID:5626098"
CDS 65627..67294
/locus_tag="A1E_00280"
/note="ChvD; in Agrobacterium tumefaciens, mutations in
both Walker boxes were found to affect virulence"
/codon_start=1
/transl_table=11
/product="putative ABC transporter ATP-binding protein"
/protein_id="YP_001491794.1"
/db_xref="GI:157803245"
/db_xref="GeneID:5626098"
/translation="MSYQYVYEMVGLSKIINGKQILKETNLSFLPRAKIGIIGPNGAG
KSTLLKIMAGIDKEFEGKAIAKIGIKVGYLPQEPYLDPSKNVFDNIIEGLHEKKKLIE
EFNDISNKFSTEITDEKMQKLFDKQAELQEKIDNCDGWNLEREIEIAMLALRCPPKEA
DITKISGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVSWLEDYLKHYEGTVIVIT
HDRYFLDNVTEWILEIDRGNCIPWESNYSSWLEQKQKKIALESKEDNDRKKQLRRELE
WIRQTPKARQSKNKARITAYHELLNKQQDQKNDPTQIIIPNGPRLGDLVIEAEHIAKK
FNNKILLSDFSFKVPRGAIVGIIGPNGAGKSTLFNIITGKIIPDSGSIKIGQTVKLGY
VDQSRDHLDDNKTIWEEISEGLDELQLGNKIVKSRAYCAAFNFRGSDQQKKVGQLSGG
ERNRVHLAKLLKEGANVILLDEPSNDLDIDTLRALEDAILGFAGCVLVISHDRWFLDR
IATHIISYDKENNATWFEGNYQDYHEYMLSTNGESILNPKYKHKKLI"
misc_feature 65627..67288
/locus_tag="A1E_00280"
/note="putative ABC transporter ATP-binding protein;
Reviewed; Region: PRK11819"
/db_xref="CDD:183324"
misc_feature 65648..>65854
/locus_tag="A1E_00280"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
misc_feature <66110..66337
/locus_tag="A1E_00280"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
misc_feature 66320..>66502
/locus_tag="A1E_00280"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:205105"
misc_feature 66602..67180
/locus_tag="A1E_00280"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
gene 67297..67614
/locus_tag="A1E_00285"
/db_xref="GeneID:5626872"
CDS 67297..67614
/locus_tag="A1E_00285"
/note="COG0488 ATPase components of ABC transporters with
duplicated ATPase domains"
/codon_start=1
/transl_table=11
/product="putative ABC transporter ATP-binding component"
/protein_id="YP_001491795.1"
/db_xref="GI:157803246"
/db_xref="GeneID:5626872"
/translation="MSLTQILLILFIGILVTNPSDIFIIIKEFKKIKAYLINIKTSII
KNVNEQLETEQLNFYLKKIINLEGYYHGDYDLTTIKEKYYTLVINNDLIDNESATDIT
EKY"
misc_feature 67411..67572
/locus_tag="A1E_00285"
/note="Protein of unknown function (DUF2672); Region:
DUF2672; pfam10878"
/db_xref="CDD:151327"
gene 67649..68473
/locus_tag="A1E_00290"
/db_xref="GeneID:5626873"
CDS 67649..68473
/locus_tag="A1E_00290"
/note="catalyzes the formation of
2-dehydro-3-deoxy-D-octonate 8-phosphate from
phosphoenolpyruvate and D-arabinose 5-phosphate in LPS
biosynthesis"
/codon_start=1
/transl_table=11
/product="2-dehydro-3-deoxyphosphooctonate aldolase"
/protein_id="YP_001491796.1"
/db_xref="GI:157803247"
/db_xref="GeneID:5626873"
/translation="MQKVVKLHNIKIGNDLPFILIAGPCQIEGQDHALFMAEKLVKLT
SKLDIPFIYKSSFDKANRTSINGVRGLGIEKGLEVLSKVKAEFDCPIVTDVHSESQCT
ETARVVDILQIPAFLCRQTDLLQAAAKTGKIVKVKKGQFLAPWDMKNVQTKLKAFGAE
NILFTERGTCFGYNNLVSDMRSLAIMAKLNVPVIFDATHSVQQPGGLGDSTGGERKYV
ELLAKAATTVGIAGMYMEVHQDPDNAPSDGPCMIKLDNLESILIKLKKYDKITKEK"
misc_feature 67673..68467
/locus_tag="A1E_00290"
/note="DAHP synthetase I family; Region: DAHP_synth_1;
pfam00793"
/db_xref="CDD:189723"
misc_feature 67673..68461
/locus_tag="A1E_00290"
/note="2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional; Region: PRK05198"
/db_xref="CDD:179961"
gene 69000..69086
/locus_tag="A1E_00295"
/db_xref="GeneID:5626874"
CDS 69000..69086
/locus_tag="A1E_00295"
/note="COG2877 3-deoxy-D-manno-octulosonic acid (KDO)
8-phosphate synthase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491797.1"
/db_xref="GI:157803248"
/db_xref="GeneID:5626874"
/translation="MKFITIATLDFNHDTFITKDVQPYSNYL"
gene complement(69865..70197)
/locus_tag="A1E_00300"
/db_xref="GeneID:5626875"
CDS complement(69865..70197)
/locus_tag="A1E_00300"
/EC_number="2.5.1.55"
/note="COG0316 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="2-dehydro-3-deoxyphosphooctonate aldolase"
/protein_id="YP_001491798.1"
/db_xref="GI:157803249"
/db_xref="GeneID:5626875"
/translation="MTITITDRAFQRVRKLIGLEKDKNLALRVSVDSGGCSGLMYNYE
LVSKNTIEQDDYVITKHNATIIIDPISQKFMLDCILDFIEELGSSYFNVHNPQAKAKC
SCGNSFTV"
misc_feature complement(69868..70188)
/locus_tag="A1E_00300"
/note="Iron-sulfur cluster assembly accessory protein;
Region: TIGR00049"
/db_xref="CDD:161681"
gene 70360..71490
/locus_tag="A1E_00305"
/db_xref="GeneID:5626876"
CDS 70360..71490
/locus_tag="A1E_00305"
/note="dGTPase family type 2 subfamily; presumably
hydrolyzes dGTP to deoxyguanosine and triphosphate"
/codon_start=1
/transl_table=11
/product="deoxyguanosinetriphosphate
triphosphohydrolase-like protein"
/protein_id="YP_001491799.1"
/db_xref="GI:157803250"
/db_xref="GeneID:5626876"
/translation="MLASYASDPLKSRGRLYKEIPNTYRNEFERDRDRIIHTNAFRRL
QYKTQVFINHEGDHYRNRLTHSLEVSAVARSVANTLNLSSDLAETIALAHDLGHTPFG
HAGERALNACMRDYNGFSHNAQSLKILTLLEKRYAAYNGVNLTWEVLEGIVKHNGPIT
CEINEYIAEYNKQNDLELDTYASAEAQIAALADDISYISHDLEDSIGAKIIDFNSLAE
LKYIDQYVFALKSKFKNISSSCLIYEVVRKLMHELITDLLWQTKENLNKEKITDIDEI
RNLNYQLVDFTANTNERIKETKKFLHERVYKSNKITAISLKCTKIVQGLFKVYMDDIN
LLPVNWKMLIDSNEIYSKARVIADYIAGMTDRFAIQAYNQLC"
misc_feature 70360..71487
/locus_tag="A1E_00305"
/note="deoxyguanosinetriphosphate triphosphohydrolase-like
protein; Provisional; Region: PRK01286"
/db_xref="CDD:179272"
misc_feature 70537..70986
/locus_tag="A1E_00305"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(70552..70554,70639..70644,70936..70938)
/locus_tag="A1E_00305"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 70642..70644
/locus_tag="A1E_00305"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 71209..71481
/locus_tag="A1E_00305"
/note="Phosphohydrolase-associated domain; Region:
HD_assoc; pfam13286"
/db_xref="CDD:205466"
gene 71666..73396
/gene="argS"
/locus_tag="A1E_00310"
/db_xref="GeneID:5625853"
CDS 71666..73396
/gene="argS"
/locus_tag="A1E_00310"
/note="catalyzes a two-step reaction, first charging an
arginine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA
synthetase"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_001491800.1"
/db_xref="GI:157803251"
/db_xref="GeneID:5625853"
/translation="MNIFNQLKQDIIAASRQLYNNQEIANIVTIETSKDNFNGDLSSN
IAMIIAAKENMPPRTVALKFKEILITLPYIASIEIAGPGFINFTIKAESWQIAIKNIL
QHEGKFFEIDIDKNKYINIEYVSANPTGPMHIGHARGAVYGDVLARILQKVGYNVTKE
YYVNDAGSQINDLVSTVLLRYREALGEKITIPVGLYPGEYLIPVGQILVKEYGNKLLV
MDEEERFKIVKNFAVEKMLDLNRKDLEELGIKHDLFFSEQSLHDKGKIEEIVKLLTNM
GLIYEGTLPAPKGKIHAKWDNRVQKLFKSTKYGDSQDRPIEKADGSWSYFASDLAYAK
DKIDRGANHLIYVLGADHSGYVKRIEAIVKALGKEQIKVDVKICQLVNFIENGVPVKM
SKRLGNFASVQDVNHEVGKDIIRFMMLTRQNDKPLDFDLVKVKEQSRENPIFYVQYAH
VRTVSILSKAMELMPESYSSFEAGIYDLSLLSSEEEIDIIKLLAAWTKTLEVSAKYFE
PHRIALYLINLASKFHSIWNFGKENSDYRFVIENNKELTTARLALAKAIQKVIASGFE
VIGVEPMNKM"
misc_feature 71672..73393
/gene="argS"
/locus_tag="A1E_00310"
/note="arginyl-tRNA synthetase; Reviewed; Region: argS;
PRK01611"
/db_xref="CDD:179308"
misc_feature 71678..71932
/gene="argS"
/locus_tag="A1E_00310"
/note="Arginyl tRNA synthetase N terminal domain; Region:
Arg_tRNA_synt_N; pfam03485"
/db_xref="CDD:202664"
misc_feature 72020..72856
/gene="argS"
/locus_tag="A1E_00310"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature order(72029..72031,72038..72040,72044..72046,72062..72064,
72071..72073,72638..72640,72650..72652,72719..72721,
72728..72730)
/gene="argS"
/locus_tag="A1E_00310"
/note="active site"
/db_xref="CDD:185675"
misc_feature 72062..72073
/gene="argS"
/locus_tag="A1E_00310"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature <72836..72952
/gene="argS"
/locus_tag="A1E_00310"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature 72839..72850
/gene="argS"
/locus_tag="A1E_00310"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature order(72959..72961,72977..72979,73007..73009,73019..73024,
73028..73033,73205..73207,73226..73228,73235..73237,
73244..73246)
/gene="argS"
/locus_tag="A1E_00310"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature 73001..73393
/gene="argS"
/locus_tag="A1E_00310"
/note="DALR anticodon binding domain; Region: DALR_1;
smart00836"
/db_xref="CDD:197905"
misc_feature order(73007..73009,73016..73021,73028..73033,73244..73246)
/gene="argS"
/locus_tag="A1E_00310"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 73472..74143
/gene="argS"
/locus_tag="A1E_00315"
/db_xref="GeneID:5625854"
CDS 73472..74143
/gene="argS"
/locus_tag="A1E_00315"
/EC_number="6.1.1.19"
/note="COG0018 Arginyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_001491801.1"
/db_xref="GI:157803252"
/db_xref="GeneID:5625854"
/translation="MINNIFVKICIGCLICISAIYFAYQYYQSSKPIITIYPDELPTK
IKPSIIENNQAAVHSTIYENLIAKDINIKTVKLLPDPEKPINIDSCNQSQSDESFDEI
SNLIALIEPSNNSKNETDLNIIKLEKGTKDKASNAKNCKNNGNYKVQLGSVKSEVEAI
QEGERIKKRFPKILQNVVITTKKVKYDDGKFFYLILAGDYGSLSQAKVVCKKLAYNKQ
SCVLK"
misc_feature 73895..74140
/gene="argS"
/locus_tag="A1E_00315"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene 74328..76544
/locus_tag="A1E_00320"
/db_xref="GeneID:5625855"
CDS 74328..76544
/locus_tag="A1E_00320"
/note="decatenates newly replicated chromosomal DNA and
relaxes positive and negative DNA supercoiling"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit A"
/protein_id="YP_001491802.1"
/db_xref="GI:157803253"
/db_xref="GeneID:5625855"
/translation="MKQAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHR
RLLYAMLQLRLEPNSGYKKCARVVGDVIGKYHPHGDGAVYDTLVRLAQYFSLRYPLID
GQGNFGSIDGDNAAAMRYTESRMTEICMLLMDDIDKDTVDFRPTYDDSDLEPVIMPAS
FPNLLANGSEGIAVGMATNIPPHNLHELCDALIHLIDHPKAEVNDIMNFIKGPDFPTG
GIIIDKAEVINAAYSTGRGSLRVRSRWKKEELSYGTYQIVVTEIPYQVQKSKLIEQIA
ILLKDKKIPLVSNIRDESTDIIRLVIEPRDRNCDPQVVMESLFKLTNLESRIQLNMNV
IGSNNVPRVMNILEILQEFLDHRQSIVTRRSTYLLNKIQHRLEILEGLRIAYLNFDEI
IKIIREEDEPKAIMINWFKLTEIQVEAILNTRLRSLHRLEEQKIINEHSNLKKQQVIL
EEILNNPKELWKVVKKEIKTVQTKFGLNTVIGARRTYFEEVTLTNQVVDITAFITKEP
ITIICSKMGWVRSFKGHNNDLSNIKYKEGDTEKFILKAYTTDKLLIVSSEGRFFTLLA
DNISKGKGTEESIKLLVDIGNNDITNILVYKPDQLLLLASSIGKGFLVNSNEVIAQTK
TGKQIMNVPNGHICITCLPANGDSVACIGESRKLLVFNIDEIPEMKKGQGVTLQKFKD
AKLLDVKIFNKEDGLGWNNNGKVKLEKNIITFLGKRGGAGKLPPMGFPKNNRFSSS"
misc_feature 74328..76532
/locus_tag="A1E_00320"
/note="DNA topoisomerase IV subunit A; Validated; Region:
PRK05561"
/db_xref="CDD:180129"
misc_feature 74409..75740
/locus_tag="A1E_00320"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(74409..74492,74505..74654,74658..74714,74718..74789,
74796..74798)
/locus_tag="A1E_00320"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 74685..74687
/locus_tag="A1E_00320"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(75486..75494,75501..75512,75534..75539,75579..75629)
/locus_tag="A1E_00320"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
gene complement(76908..78230)
/locus_tag="A1E_00325"
/db_xref="GeneID:5625856"
CDS complement(76908..78230)
/locus_tag="A1E_00325"
/note="COG0188 Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit A"
/protein_id="YP_001491803.1"
/db_xref="GI:157803254"
/db_xref="GeneID:5625856"
/translation="MKNLLLATSIVCFASACLATKNPTPIISNSDTSIKLEGFYLLES
GYIKQDHLILFDKNVTDNRKKLGFYTEAAFAATITKTINDIIAGAKIVLQPTTRVKTS
TSYNGSHIFIETSYGKTELGSPADASAKLRITGSQVTAGTGGWSRYALLNGQHMRYKG
LKPDFDTNASFYLESYSNYFDQINDKTERARRVNFFTPKMKGFQAAISYTPDTANTGG
NRYINNLMPDKSSGSNVISVSKTGIQRVKLENNEAMTINQNIRDAFSAGLTYEHEISE
DTDLKLSVTGEYGKPARRLIHTKMDRTKGVEVLNTYKLSNLKAYNLGAVFTYGNFSCG
ASYGSLGKSLTAKEYYKVGRDTYYYNGAVAYRQGPIKTSLEYLKTSRYKNTVNTVSLA
TEYKIMPGLLPYAEISHFQAKGKPVYYPEAPRKTTRGTVGLIGTKLKF"
misc_feature complement(76986..78191)
/locus_tag="A1E_00325"
/note="Gram-negative porin; Region: Porin_4; pfam13609"
/db_xref="CDD:205787"
gene 78514..79080
/gene="dcd"
/locus_tag="A1E_00330"
/db_xref="GeneID:5625857"
CDS 78514..79080
/gene="dcd"
/locus_tag="A1E_00330"
/EC_number="3.5.4.13"
/note="Catalyzes the formation of dUTP from dCTP in
thymidylate biosynthesis"
/codon_start=1
/transl_table=11
/product="deoxycytidine triphosphate deaminase"
/protein_id="YP_001491804.1"
/db_xref="GI:157803255"
/db_xref="GeneID:5625857"
/translation="MAIMSDKWIKEAVINQSMIKPFVEKQVRVHNKDKIISYGLSSYG
YDARVSNEFKIFTNINSTTVDPKNFSEYNLVDREVDVCIIPPNSFALGRTIEYFKVPR
DILVICVGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFL
NSDQMCDTSYADRQGKYMKQVGVTLPLT"
misc_feature 78727..78990
/gene="dcd"
/locus_tag="A1E_00330"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature order(78760..78762,78775..78780,78784..78786,78832..78834,
78838..78855,78868..78876,78886..78888,78895..78897,
78916..78918,78922..78924,78928..78930,78934..78936,
78946..78960,78967..78969,78979..78981)
/gene="dcd"
/locus_tag="A1E_00330"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature order(78844..78852,78886..78894,78901..78903,78913..78918)
/gene="dcd"
/locus_tag="A1E_00330"
/note="active site"
/db_xref="CDD:143638"
gene 79177..79635
/locus_tag="A1E_00335"
/db_xref="GeneID:5626707"
CDS 79177..79635
/locus_tag="A1E_00335"
/note="molecular chaperone that is required for the normal
export of envelope proteins out of the cell cytoplasm; in
Escherichia coli this proteins forms a homotetramer in the
cytoplasm and delivers proteins to be exported to SecA"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecB"
/protein_id="YP_001491805.1"
/db_xref="GI:157803256"
/db_xref="GeneID:5626707"
/translation="MSTINTNTNEVMPHISVNAQYIKDLSLENPSAPSSLAALDQRPQ
IDLSLDINITNLSEENFYEVELNIEAIARNEKYTLFQIELKYAGVFNLINIDSEQHPI
LLSVHCPAMIFPFARKIIASCTQDAGFQPLMIDPIDFGALYHKKMSEHQN"
misc_feature 79219..79611
/locus_tag="A1E_00335"
/note="Preprotein translocase subunit SecB. SecB is a
cytoplasmic component of the multisubunit membrane-bound
enzyme termed Sec protein translocase, which is the main
constituent of the General Secretory (type II) Pathway
involved in translocation of nascent...; Region:
Translocase_SecB; cd00557"
/db_xref="CDD:29643"
misc_feature order(79246..79248,79258..79260,79417..79419,79423..79425)
/locus_tag="A1E_00335"
/note="SecA binding site; other site"
/db_xref="CDD:29643"
misc_feature order(79414..79416,79420..79422,79426..79428,79432..79434)
/locus_tag="A1E_00335"
/note="Preprotein binding site; other site"
/db_xref="CDD:29643"
gene 79861..80574
/locus_tag="A1E_00340"
/db_xref="GeneID:5626708"
CDS 79861..80574
/locus_tag="A1E_00340"
/note="COG0745 Response regulators consisting of a
CheY-like receiver domain and a winged-helix DNA-binding
domain"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecB"
/protein_id="YP_001491806.1"
/db_xref="GI:157803257"
/db_xref="GeneID:5626708"
/translation="MRVLLIEDKPEMANLIELTLASEGIVCDKASVGVEDLRLAKVSG
YDLVILDLMLPDINSFEILLRLRAAKIKTPILILSSLTDTDQKITGFSFGADDYLTKP
FVREELIARIKAIVRRSKGHVASVFRFDKVSVNLDTRSVEVEGKKVHLTNKEYAVLEL
LILRRGTILTKEMFLNHLYNSVDEPAIKIIDVFICKLRKKLSDAAGGRDYIDTVWGRG
YMLKEYDELQQKEILAQGA"
misc_feature 79861..80529
/locus_tag="A1E_00340"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 79870..80208
/locus_tag="A1E_00340"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(79879..79884,80011..80013,80035..80037,80095..80097,
80152..80154,80161..80166)
/locus_tag="A1E_00340"
/note="active site"
/db_xref="CDD:29071"
misc_feature 80011..80013
/locus_tag="A1E_00340"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(80020..80025,80029..80037)
/locus_tag="A1E_00340"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 80161..80169
/locus_tag="A1E_00340"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 80239..80523
/locus_tag="A1E_00340"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(80311..80313,80368..80373,80425..80427,80434..80436,
80458..80463,80497..80499,80512..80514)
/locus_tag="A1E_00340"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 80578..81399
/gene="queF"
/locus_tag="A1E_00345"
/db_xref="GeneID:5626709"
CDS 80578..81399
/gene="queF"
/locus_tag="A1E_00345"
/note="catalyzes the NADPH-dependent reduction of
7-cyano-7-deazaguanine (preQ0) to
7-aminomethyl-7-deazaguanine (preQ1) in queuosine
biosynthesis"
/codon_start=1
/transl_table=11
/product="7-cyano-7-deazaguanine reductase"
/protein_id="YP_001491807.1"
/db_xref="GI:157803258"
/db_xref="GeneID:5626709"
/translation="MPLSASLLGKNSTYKDSYDATLLFKIPRINNRNELGINSNNLPF
YGVDIWNTYELSCLNKNGKPWVGVGTFYIPTDSENIVESKSFKLYLNSFNNFVVESIE
ELERIILQDLSNVTHAKVTGQIFPINTKIEFGLPSGKNIDDLNIECNNYCPPDNSLIE
YEDVLVEEEINSNLLKSNCLVTGQPDWGTIVIKYRGKKLKHDSFLKYLISFRNYNEFA
EQCAERIFTDINNSINPDFLSIYIVYTRRGGIDICPYRSLDQNYNLPSNKRLIRQ"
misc_feature 80581..81396
/gene="queF"
/locus_tag="A1E_00345"
/note="7-cyano-7-deazaguanine reductase; Provisional;
Region: queF; PRK11792"
/db_xref="CDD:183317"
misc_feature <80791..>80934
/gene="queF"
/locus_tag="A1E_00345"
/note="Tunnelling fold (T-fold). The five known T-folds
are found in five different enzymes with different
functions: dihydroneopterin-triphosphate epimerase
(DHNTPE), dihydroneopterin aldolase (DHNA) , GTP
cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold;
cl00263"
/db_xref="CDD:212183"
misc_feature 80983..81396
/gene="queF"
/locus_tag="A1E_00345"
/note="Enzyme related to GTP cyclohydrolase I [General
function prediction only]; Region: COG0780"
/db_xref="CDD:31123"
gene complement(81672..82232)
/locus_tag="A1E_00350"
/db_xref="GeneID:5626710"
CDS complement(81672..82232)
/locus_tag="A1E_00350"
/note="COG3820 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491808.1"
/db_xref="GI:157803259"
/db_xref="GeneID:5626710"
/translation="MNAQKILPLLPKATAMWLIEHTSLTFKQIADFCGIHEFEIKGMA
DGEVAQSIKGLSPIANGQLTLEEIERCSKDPNTSLQISYSPTDELMKNQKKQRAKYIP
IARRQDKPDAIYWLLSNYPNIQDHQIIKLVGTTKTTINAIRTRSHWNMNSIRPRDPVL
LGICSQIDLNKIVEVLKPIQNPTKES"
misc_feature complement(<81675..82223)
/locus_tag="A1E_00350"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3820"
/db_xref="CDD:33613"
gene complement(82887..82976)
/locus_tag="A1E_00360"
/db_xref="GeneID:5626711"
CDS complement(82887..82976)
/locus_tag="A1E_00360"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491809.1"
/db_xref="GI:157803260"
/db_xref="GeneID:5626711"
/translation="MVNILEHSNINVRFAAHPVAGRMAPRGGI"
misc_feature complement(<82908..>82976)
/locus_tag="A1E_00360"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; cl00566"
/db_xref="CDD:199328"
gene 83232..83489
/locus_tag="A1E_00370"
/db_xref="GeneID:5626052"
CDS 83232..83489
/locus_tag="A1E_00370"
/note="COG1282 NAD/NADP transhydrogenase beta subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491810.1"
/db_xref="GI:157803261"
/db_xref="GeneID:5626052"
/translation="MSRLLLSVKPIPAAAKPEYEFSIDTITGISAPPIGIINNTPINS
DTKTIRLNKNILSERINDLIKRTNIIADHRILTGYFLLSQF"
gene complement(83991..84722)
/locus_tag="A1E_00380"
/db_xref="GeneID:5626053"
CDS complement(83991..84722)
/locus_tag="A1E_00380"
/note="COG3047 Outer membrane protein W"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491811.1"
/db_xref="GI:157803262"
/db_xref="GeneID:5626053"
/translation="MLRIVKKLGITLLVSSISMSSFAKSMYNDIDSTEYYDSTPYYEN
EGSLVFKVRLGATFSSAKQKGLPPPTSTQPVSVGEVAKNGYGGNASTTIFFNNYLATE
LSLGFNVLRTKYKAIANVAHNYGAVTKLGKYKPIYMIPATITGQFHIAPYGGIRPYIG
LGYHGSYMLTQATSLKIRNGHGAVGQIGVDFYAKDDTLINLDVKQFLLNPKLEYKPNL
VGNKTVTSKVKLNPLIVSIGIGFPF"
misc_feature complement(83994..84647)
/locus_tag="A1E_00380"
/note="Outer membrane protein W [Cell envelope biogenesis,
outer membrane]; Region: OmpW; COG3047"
/db_xref="CDD:32861"
gene 84866..85750
/locus_tag="A1E_00385"
/db_xref="GeneID:5626054"
CDS 84866..85750
/locus_tag="A1E_00385"
/note="COG0697 Permeases of the drug/metabolite
transporter (DMT) superfamily"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine transporter"
/protein_id="YP_001491812.1"
/db_xref="GI:157803263"
/db_xref="GeneID:5626054"
/translation="MNDALKTYLTGIGWFLLSLVSSSANDVMSKYLGTRLDSFEVAFF
RFFFSSIVLLPFVAYYGKNTLKTSSPFVHILRGLLLFFGMTAWTYGLTIAPVTTATVI
SFSIPLFTLILAVFFLNENIIWQRWVVTIVGFIGLVITLKPHAEDFNPEILYFVLAAI
SFAMLDIINKKFVIKESMISMLFYSAIVTAIVSLPVASQYWLTPSSFELVLLFVLGSS
GSIILFFLLKAFSMVDATATAPYRYLELVISAIAAYLIFNEFPDKSTLYGAVIIIPAT
LFIIYSEKKAMSRKHESQ"
misc_feature <85016..85288
/locus_tag="A1E_00385"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature 85343..85708
/locus_tag="A1E_00385"
/note="EamA-like transporter family; Region: EamA;
cl01037"
/db_xref="CDD:207295"
gene 85737..86999
/gene="queF"
/locus_tag="A1E_00390"
/db_xref="GeneID:5626055"
CDS 85737..86999
/gene="queF"
/locus_tag="A1E_00390"
/codon_start=1
/transl_table=11
/product="7-cyano-7-deazaguanine reductase"
/protein_id="YP_001491813.1"
/db_xref="GI:157803264"
/db_xref="GeneID:5626055"
/translation="MNRSKLVFSSVIANTFEWYDYVLFGYFAPIIGAKFFPNDEANTA
LLQAFLVFAIGYLARLLGGIFFGVIGDRFGRKVALTSALFCMSAPTVLIGILPTYHTI
GITATILMIIVRILQGLSMGGALTGSISFVIEHTSSKHRGFTGSILMSSICSGLLLGA
FVSYIVRHILTASQFDNFGWRIPFLLGFFILFAAFYIKKHTDETPNFKNLREQKKILQ
SPLEKVITNHWFDILISIFINAPGSIIFYLTTIYLVSFLKISRNFTEDEVNSLASVCY
VIMIAVTLLSGYLSDIIGRRKIFVINLVIIIVMTPFLLNNFKNGDFTSIIISQFILAV
LAASYIGPEPALQAEFYHANIRNTALSISYNTATSIFGGTTPLVFEYLVQKTGHVTSA
VYYIILSCIFALIALSFYKNRSLDKMQS"
misc_feature 85755..86966
/gene="queF"
/locus_tag="A1E_00390"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 85776..86948
/gene="queF"
/locus_tag="A1E_00390"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature order(85797..85799,85806..85814,85818..85823,85890..85892,
85899..85904,85911..85913,85923..85928,85932..85937,
86097..86102,86109..86114,86121..86126,86133..86135,
86169..86174,86181..86186,86202..86204,86463..86465,
86472..86477,86484..86489,86496..86498,86538..86540,
86550..86552,86562..86564,86571..86573,86583..86585,
86733..86735,86742..86747,86754..86756,86766..86771,
86778..86780,86811..86816,86826..86831,86838..86843,
86850..86852)
/gene="queF"
/locus_tag="A1E_00390"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 87085..87159
/locus_tag="A1E_t05686"
/db_xref="GeneID:5626056"
tRNA 87085..87159
/locus_tag="A1E_t05686"
/product="tRNA-Thr"
/db_xref="GeneID:5626056"
gene 87321..87623
/gene="secG"
/locus_tag="A1E_00395"
/db_xref="GeneID:5626712"
CDS 87321..87623
/gene="secG"
/locus_tag="A1E_00395"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecG"
/protein_id="YP_001491814.1"
/db_xref="GI:157803265"
/db_xref="GeneID:5626712"
/translation="MIDILLFVHITIAILLIIVILMQRSGSDGISSISGGNNMGVVSA
KTVSNFLTKSTVILMILFLINAIVLANLSSKKKSDLVSKINEIEENQTENSLPIAK"
misc_feature <87450..87533
/gene="secG"
/locus_tag="A1E_00395"
/note="Preprotein translocase SecG subunit; Region: SecG;
cl09123"
/db_xref="CDD:212294"
gene 87913..88575
/locus_tag="A1E_00400"
/db_xref="GeneID:5626713"
CDS 87913..88575
/locus_tag="A1E_00400"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491815.1"
/db_xref="GI:157803266"
/db_xref="GeneID:5626713"
/translation="MSIEFNIKEKIYIILCTFFTVLIIVGNLIYQKFISLNIFNFYIL
ELSVGTILYPLTFLFTDLITEFYSKERANFCVKLAIIFNIIVVLIISLMDKLEATNWS
NVDNITFHKVFGSYHISFLASTFACYIAQLLDINIYLWIRKITKGKYLWIRNNFSTAI
SLFIDTFIVIGIMSLFNIIPLKQLDYLVLNSYSFKLFFTIFSTPIFYAGVCLISLFFK
KG"
misc_feature 88051..88497
/locus_tag="A1E_00400"
/note="Uncharacterized ACR, YhhQ family COG1738; Region:
DUF165; pfam02592"
/db_xref="CDD:190356"
gene complement(88817..94246)
/gene="secG"
/locus_tag="A1E_00405"
/db_xref="GeneID:5626714"
CDS complement(88817..94246)
/gene="secG"
/locus_tag="A1E_00405"
/note="COG1738 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecG"
/protein_id="YP_001491816.1"
/db_xref="GI:157803267"
/db_xref="GeneID:5626714"
/translation="MNAQSFNSKKYALAFFMSTYLLAISFLSTSARAASFTQLANKTP
ALSHLSEAQRKNQWNQYSLVTKQAAWKAAKLVPDLNQAILDVQNGFDPKLLSDSNTNI
RHKAREKNADITLYIAQIAQPDYDKKFNEYINRGVIPTPEEVGENLGIVYDPRKTNST
IETDQKVRRAEKDKKAIIDRYIDLVKIALVEKDYTTTGMVPELEELTKKLNIDKAKAK
LRRTAIRDQVMKNKKAEIITIGKIPTQETLHKLFGKDRESNDTKYINDIRMHVMHNKK
QHYVDTNHIPNTHEIMKEFNIDKGHAKLYLKQIKAETEVKHQADNKQNTTKPFTKHSR
TTTDTEEKFSQFPFDTLKKEKQPYSFDPRSTLERLLKGKGNNNFTQSQQNIYKIIQQE
ANIEEFKHLIKTEPIAALNLEVDSSYKKEAVNAILSDFNNDTIQKILFSDDKGKLNFN
TNIDVEHKPILKELFKNSSEEQRKKIIENISKYAKENIIPLVFKGEVRHDKLSDLLKL
AAITDKSIVKKVLMLQLELKNNVHSYTAQGNGISPEGIKVINAILRKYHVTEKDLSSS
EMIKLANSFHSQGFEDSIKIMSFSEQELNTQIYNLFGLSIQNKTHGNGNMPPLLPPPP
PPLPPLFGNPYLDKLKSTPKLYDLYNQFIQNNKSKNKKTTENITKSNTPKRSEPKTEY
AKLYKQYRAETGGKKADDLQDQLIKKQSDITNVIRQILTASYAEQGINTEDLITLFGN
PNPEVTEKAKEVFVILVQDPYIQDITVNGKKTITSEAILQNLFNEDADDAVERILLSS
CKISEALKKPIEHELNKSKLMRELESKQNPFEQLKFAYEKAAILGQTFDTKLAELIKN
PAILTTQEQINFLTQENNKLKKVIHSDQAQAKLDNLRTAILSTIKFEELTTANLSQND
FIAIVKEKDPELLKEFLKATIIKHESNNNLDQLRLALPSFTGMSDQQVRILSSKLNMY
VILKALQKYEQEESKNHTHTSNMPPPPPPPPGSKILQITYLKNLGITEDWINRITKLN
ENINTHTSKTVPQVYDFNSDIALRYNGFALSGQKSAGHKAKYSDADLLQKAIIESIVL
EHSKNVSEVNQNTQYFEKMQEAVSTMKSSFIGPRTEIGQEIHNIYTSKLLELTKDKEF
IRYVEDNVKPSKKRTDALIAAFTSVNSDFIGPITEDIHNIFTQQMTKYTEEEVREAFN
TANSDFIGPRTEIGQEVHNIYNSKLLELTKDKELLLFVEELLTESTNLEQKYGSNVQP
ENKGKKESLVDKMKKRLQQENKVKNDKSSIESNTKYEDNDDNNKKLELSDSKTTVSQM
LSNSNDSKNDKSLTESDTKYEDNDDNNKKLELSDSKTTVSQMLSDSNDSKNDKSLTES
DTKYEDNDDNNKKLELSDSKTTVSQMLSDSNDSKNDKSSDDKKSLLALRSSDEEDEGY
ETDEKELEESNNTTEEEFKKDIPLESEDKTINMSLETEEIARQDEAVLKEQISKETNN
KVAILVKATSTLNKYIHPSILANRLNIGIIAAGDEEASINRGLWISGLYGINKQSAWK
NIPKYQGRTTGITIGTDAEFINSHDVIGIAYSRLNSQVKYNKKLGKTAINGHLLSIYG
QKELIKGFTLQAITTYSHNYIKNKSISTNNIIGKYQNNNVSFESLLNYKYRTKYDLYL
IPNISLKYDYSRASNYKEYNVDIENLMIQKKSNQSFESSLGGKIVFKPIATISNIVLT
PSLYGNIEYHFNNKNTKVNAKATFKGQALQEIIILPKQPKLGYNIGSNILMSRKNINV
LLEYNYYTHKKYQSHQGLVKLKVNL"
misc_feature complement(88844..89647)
/gene="secG"
/locus_tag="A1E_00405"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 94415..95794
/gene="cysS"
/locus_tag="A1E_00410"
/db_xref="GeneID:5626715"
CDS 94415..95794
/gene="cysS"
/locus_tag="A1E_00410"
/EC_number="6.1.1.16"
/note="catalyzes a two-step reaction; charges a cysteine
by linking its carboxyl group to the alpha-phosphate of
ATP then transfers the aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="cysteinyl-tRNA synthetase"
/protein_id="YP_001491817.1"
/db_xref="GI:157803268"
/db_xref="GeneID:5626715"
/translation="MQIQFHLYNTLTRTKELFRPQDQANVKMYVCGPTVYDNPHIGNS
RSAAVYDLLYRILIKIFGSTAVKYIRNITDVDDKIIDRAELLGSTINELTDKVTQEFH
INMEYLGCKLPSIEPKATEHIDIMIEIIERLIAKKHAYIADKHVYFNVLSAPNYTELS
NRNLEEMFEGVRVENSKTKKHPQDFVLWKPAKPNESANMNFDSPWGLGRPGWHIECSA
MSYKYLGENFDIHGGGADLIFPHHTNEIAQSRCAFPSSTYAKYWVHHGFLTVNGEKMS
KSLGNFITVRDLMDKEISGEVIRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIVN
INLQKIDIIPNDFMQSLLDDMNTPLAVKIINDYARGVFTSTTEEEKKFNASNLITCAN
FIGLMNKTPHEWFNSGVNELYINELVNKRLEAKKQKNWLLADQIRNQLLEQQIVLEDK
PDGTIWRKG"
misc_feature 94430..95791
/gene="cysS"
/locus_tag="A1E_00410"
/note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
PRK00260"
/db_xref="CDD:178951"
misc_feature 94430..>94771
/gene="cysS"
/locus_tag="A1E_00410"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature order(94505..94516,94532..94534,94538..94543,94550..94555,
94625..94627,94631..94633)
/gene="cysS"
/locus_tag="A1E_00410"
/note="active site"
/db_xref="CDD:173899"
misc_feature 94532..94543
/gene="cysS"
/locus_tag="A1E_00410"
/note="HIGH motif; other site"
/db_xref="CDD:173899"
misc_feature <95048..95356
/gene="cysS"
/locus_tag="A1E_00410"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature 95234..95248
/gene="cysS"
/locus_tag="A1E_00410"
/note="KMSKS motif; other site"
/db_xref="CDD:173899"
misc_feature 95357..95788
/gene="cysS"
/locus_tag="A1E_00410"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:212339"
misc_feature order(95360..95362,95372..95374,95381..95383,95390..95392,
95402..95407,95411..95416,95498..95500,95519..95521,
95528..95530,95537..95539)
/gene="cysS"
/locus_tag="A1E_00410"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature order(95390..95392,95399..95404,95411..95416,95537..95539)
/gene="cysS"
/locus_tag="A1E_00410"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 96094..96981
/gene="rpsB"
/locus_tag="A1E_00415"
/db_xref="GeneID:5625831"
CDS 96094..96981
/gene="rpsB"
/locus_tag="A1E_00415"
/note="one of the last subunits in the assembly of the 30S
subunit; absence of S2 does not inhibit assembly but
results in an inactive subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S2"
/protein_id="YP_001491818.1"
/db_xref="GI:157803269"
/db_xref="GeneID:5625831"
/translation="MSKIPSVNIKELLDAGVHFGHKTSRWNPKMGSYIYGERDDVHII
DLRQSAVLMSVALNAIYETVKKDGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGG
MLTNWKTIAGSIEKLNKLEKTLGNEEALMGYTKKEILDMSRKKDKLLLSLAGIRNLNS
KPDLLVVIDTNKEHIAINEAVKLNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYC
SLFADAALQGLAESMKASGVDMGAIQEHTDKALTSKSVSKLKQTKKFSKMKNIDEETN
TEFEQALNDADKNKNSENA"
misc_feature 96127..96774
/gene="rpsB"
/locus_tag="A1E_00415"
/note="Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli RPS2
is essential for the binding of...; Region: RPS2; cd01425"
/db_xref="CDD:100106"
misc_feature order(96175..96180,96205..96213,96385..96387,96391..96399,
96406..96411,96628..96630,96637..96639)
/gene="rpsB"
/locus_tag="A1E_00415"
/note="rRNA interaction site [nucleotide binding]; other
site"
/db_xref="CDD:100106"
misc_feature order(96634..96639,96643..96645,96685..96696)
/gene="rpsB"
/locus_tag="A1E_00415"
/note="S8 interaction site; other site"
/db_xref="CDD:100106"
misc_feature 96739..96756
/gene="rpsB"
/locus_tag="A1E_00415"
/note="putative laminin-1 binding site; other site"
/db_xref="CDD:100106"
gene 97003..97932
/gene="tsf"
/locus_tag="A1E_00420"
/db_xref="GeneID:5625832"
CDS 97003..97932
/gene="tsf"
/locus_tag="A1E_00420"
/note="EF-Ts; functions during elongation stage of protein
translation; forms a dimer; associates with EF-Tu-GDP
complex and promotes exchange of GDP to GTP resulting in
regeneration of the active form of EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Ts"
/protein_id="YP_001491819.1"
/db_xref="GI:157803270"
/db_xref="GeneID:5625832"
/translation="MSEVNISAVVVKALREKTGAGMMDCKNALIETRGNFEEAIDFLR
KKGLAAAVKKAGRITSEGLTAAKVEGLTGVVIEVNSETDFVARNEQFQDLVKNIVNLA
VVAKTIDKLKTSKMLNSKSVEEGIIENIATIGENLTLRRMDILEISEGAIGSYVHNEV
VPNLGKISVLVGLESKAKDKTKLEALAKQIAVHVAGNNPQSIDDSSLDQVLVERERKI
FFEKSKEEGKPYNIIEKMVEGRIRKFFSEVVLLQQGFLFEPRLTVAEVIKNTEKELGA
EIKITKFIRYELGEGIEHEEKNFADEVTAITQG"
misc_feature 97015..97917
/gene="tsf"
/locus_tag="A1E_00420"
/note="elongation factor Ts; Provisional; Region: tsf;
PRK09377"
/db_xref="CDD:181810"
misc_feature 97018..97128
/gene="tsf"
/locus_tag="A1E_00420"
/note="UBA/TS-N domain; Region: UBA; pfam00627"
/db_xref="CDD:201355"
misc_feature 97177..>97296
/gene="tsf"
/locus_tag="A1E_00420"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
misc_feature 97444..97872
/gene="tsf"
/locus_tag="A1E_00420"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
gene complement(98936..100189)
/locus_tag="A1E_00425"
/db_xref="GeneID:5625833"
CDS complement(98936..100189)
/locus_tag="A1E_00425"
/note="catalyzes the transfer of
2-keto-3-deoxy-D-manno-octulosonic acid to lipid A"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_001491820.1"
/db_xref="GI:157803271"
/db_xref="GeneID:5625833"
/translation="MMLLYYTLSFILLPVYFIIILIRLLIGKEDIKRIQERFAIGKHR
QNSSFLVWIHAASIGESMTALTLIHNISKRYPDVRFLVTSWTQASAKILSTKLPKIAT
HQFLPIDNIIVTRKFLRNWQPNLGIFIESELWPCTINEGAKQCKLLLVNARISDKSFK
AWQKRKSFFQLILKNFSKIIVQSERDLQKFNKLGVSDAINLGNIKFANEKLPVNQEEL
SKLSLHLNNRRVVVFASTHMEDEELILPIIKSLKEQFLDCYVILIPRHPERVKSIIDN
CKSHNLSSTAKSQNDSPVLSDDLYIVDRFGEMGLFFSVATISFIGGSFKQGGHNILEA
AYFSNCIIFGPDMSKNTDIAKDILQHKAAIQIKNGEDLLTKLQYLLSSNNSLELKIYR
ENALKFVENNQKVLYEYLKVITKFL"
misc_feature complement(98939..100189)
/locus_tag="A1E_00425"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:180233"
misc_feature complement(99563..100102)
/locus_tag="A1E_00425"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:203003"
gene complement(100186..100842)
/locus_tag="A1E_00430"
/db_xref="GeneID:5625834"
CDS complement(100186..100842)
/locus_tag="A1E_00430"
/note="COG2121 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_001491821.1"
/db_xref="GI:157803272"
/db_xref="GeneID:5625834"
/translation="MWKAFKKLLKRNRCVLSIITILLYWYLRFVYLTSRQKFIFYDNG
NKAKFLNEQGVIFVFWHNMLALSPAMFIGHRNIYALISPHLDGEILNNLVGKFGCRVI
VGSTNKNPIAALRNIIGNLSQGANIIVTPDGPKGPVYKVNSRITEIAYRYNKKVIPII
SSTSKCFRLNSWDKLIIPLPFGTIKIIVGSPLELTNDKIQNHINLEKQLASLTESLKE
"
misc_feature complement(100189..100764)
/locus_tag="A1E_00430"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: DUF374; Region:
LPLAT_DUF374-like; cd07983"
/db_xref="CDD:153245"
misc_feature complement(order(100438..100446,100591..100602,
100645..100647,100651..100653,100660..100662))
/locus_tag="A1E_00430"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153245"
gene complement(100917..102137)
/locus_tag="A1E_00435"
/db_xref="GeneID:5625835"
CDS complement(100917..102137)
/locus_tag="A1E_00435"
/note="catalyzes the formation of oxalozcetate and
L-glutamate from L-aspartate and 2-oxoglutarate"
/codon_start=1
/transl_table=11
/product="aspartate aminotransferase"
/protein_id="YP_001491822.1"
/db_xref="GI:157803273"
/db_xref="GeneID:5625835"
/translation="MSIISTRLNSIKPSPTLAIVKKTLELKRLGIDIIALGAGEPDFD
TPDNIKEAAIKAIKDGFTKYTNVDGMLTLKQAIKDKFKRENNIDYELDEIIVSAGGKQ
VIYNLFMASLDKGDEVIIPAPYWVSYPDMVALSLGTPVFVNCGIENNFKLSAEALEPL
ITDKTKWLIINSPNNPTGASYNFEELENIAKVLRKYSHVNVMSDDIYEHITFDDFKFY
TLAQIAPDLKERIFTVNGVSKAYSMTGWRIGYGVGSKALIKAMTIIQSQNTSNPCSIS
QMAAIEALNGPQDYIETNALSFQQKRDLALSILKRVKYFECYKPEGAFYLFIKCDKIF
GHKTKLAKIITNSNDFAEYLLEEAKVAVVPGIAFGLEGYFRISYATSMTELEEACLRI
ERAINVIPTNTGIQ"
misc_feature complement(100947..102137)
/locus_tag="A1E_00435"
/note="aspartate aminotransferase; Provisional; Region:
PRK05764"
/db_xref="CDD:180244"
misc_feature complement(100956..102038)
/locus_tag="A1E_00435"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(101397..101399,101421..101426,
101430..101432,101517..101519,101613..101615,
101763..101765,101835..101843))
/locus_tag="A1E_00435"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(101301..101303,101310..101312,
101397..101405,101538..101540,101733..101735,
101832..101834))
/locus_tag="A1E_00435"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(101421..101423)
/locus_tag="A1E_00435"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 102411..103418
/locus_tag="A1E_00440"
/db_xref="GeneID:5626508"
CDS 102411..103418
/locus_tag="A1E_00440"
/note="COG0457 FOG: TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491823.1"
/db_xref="GI:157803274"
/db_xref="GeneID:5626508"
/translation="MLGKIKDKIKHDCLIIMDIPNFIKNKILEFKNYISDCKYKFSHI
AETNYQLGLDHLYRGNLNDALLRFKLVDKFFNPNNSKVYYQLGLVYFLKNNYRQAIEY
LEKSNEKYKTVFINFLKNYNDITEIPQEIWVQYRDLTAKYYPTIFNNDKNINLPYRFV
NEALKQISDVPDNYSILELGSNIGLVGYEIQKHFPESFTLTGVEISALMNALQETYYP
NTKIYDQIYNISINKFLSQNSNKFDIIFNFCGLSFTNNLVEYFNLIYSSLSKQGYFAL
CLPTSVKTQFSVKRKEFIFNLNEINNFLQKNNFTIFTSEEIILAEHNKYSIIVCCKKT
T"
misc_feature 102537..102743
/locus_tag="A1E_00440"
/note="Tetratricopeptide repeat; Region: TPR_12;
pfam13424"
/db_xref="CDD:205602"
misc_feature 102555..>102779
/locus_tag="A1E_00440"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
misc_feature order(102555..102560,102567..102572,102660..102665,
102669..102674,102681..102686,102753..102758,
102765..102770,102777..102779)
/locus_tag="A1E_00440"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(102564..102566,102600..102602,102612..102614,
102621..102623,102669..102671,102705..102707,
102717..102719,102726..102728,102762..102764)
/locus_tag="A1E_00440"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature 102879..>103247
/locus_tag="A1E_00440"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature 102936..103244
/locus_tag="A1E_00440"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(102945..102965,103020..103025,103095..103103,
103149..103151)
/locus_tag="A1E_00440"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 103393..104178
/locus_tag="A1E_00445"
/db_xref="GeneID:5626509"
CDS 103393..104178
/locus_tag="A1E_00445"
/note="COG2853 Surface lipoprotein"
/codon_start=1
/transl_table=11
/product="vacJ lipoprotein precursor"
/protein_id="YP_001491824.1"
/db_xref="GI:157803275"
/db_xref="GeneID:5626509"
/translation="MFVVRKQHKSMRILIILSIILCSLFARADLEYVDNDIYNYNGGR
NEKGCLEVYDPYEKFNRKVFAFNSALDYIILRPLAVGYKNITNDYVKARVNSLVSNID
TLLTAVNYGLQLNYDKTMKSVWRFLINTTLGIGGLFDVAGKVGLPSDRQTFGNTLAHY
GVAPGPYLVLPIIGSTNARDMTDLIFTNYVLNPLMYYTRNDFELGVLVVSKINNRCVV
LPFSDYVMKNSTDPYVAIRSALHRAREASVQYPENFKCPKPKN"
misc_feature 103465..104172
/locus_tag="A1E_00445"
/note="Surface lipoprotein [Cell envelope biogenesis,
outer membrane]; Region: VacJ; COG2853"
/db_xref="CDD:32681"
gene 104204..104794
/locus_tag="A1E_00450"
/db_xref="GeneID:5626510"
CDS 104204..104794
/locus_tag="A1E_00450"
/EC_number="2.6.1.1"
/note="COG2854 ABC-type transport system involved in
resistance to organic solvents, auxiliary component"
/codon_start=1
/transl_table=11
/product="aspartate aminotransferase"
/protein_id="YP_001491825.1"
/db_xref="GI:157803276"
/db_xref="GeneID:5626510"
/translation="MITGLFLLVITFSAYSNEKVPAGLNDYITNLVNEASITLNNSSL
SQEAKISKARELIYNNLDFNWMARYTLGRNGVKTLSNEQIREFIKIYSKYVTKAYTDL
IKDYKGAKPKIVGVRALNSTDFMVAMNIISNKGQDPIKVEYLIREMKKDGKGFFKVSD
IITEGVSLIGAQQDEFINTLKNEGFDQLIQNLQSRS"
misc_feature 104204..104791
/locus_tag="A1E_00450"
/note="ABC-type transport system involved in resistance to
organic solvents, auxiliary component [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: Ttg2D; COG2854"
/db_xref="CDD:32682"
gene 105806..106873
/gene="alr"
/locus_tag="A1E_00455"
/db_xref="GeneID:5626511"
CDS 105806..106873
/gene="alr"
/locus_tag="A1E_00455"
/note="converts L-alanine to D-alanine which is used in
cell wall biosynthesis; binds one pyridoxal phosphate per
monomer; forms a homodimer"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_001491826.1"
/db_xref="GI:157803277"
/db_xref="GeneID:5626511"
/translation="MSLCTLAINLSAIKNNYFLLQDICKTSLVGAVVKADGYGLGAVQ
ISKALIEENCRHFFVASSEEGVNVRKALGIDVNILVLNGVFEHDALELIEYNLIPILN
NLKQIEIWQQFGNLKNLLLPCYLHFNTGINRLGLSSNEIEQLINNRDLLKGLNLQYII
SHLAISEEIDNPYNLEQLNKFKAYLRYFPSIKASLANSGGIFLGQDYHFDLVRPGAAL
YGLNPLMQNPVTLKAPIIHLQNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGYSRNF
SNQGKVFINGRSVPIVGRVSMDLINIDVTDLPPSDIFLGQEVEIIGNHCTPDKIASII
GTIGYEVLTSLGNRYRRKYTR"
misc_feature 105806..106864
/gene="alr"
/locus_tag="A1E_00455"
/note="alanine racemase; Reviewed; Region: alr; PRK00053"
/db_xref="CDD:178827"
misc_feature 105815..106864
/gene="alr"
/locus_tag="A1E_00455"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Alanine Racemase; Region: PLPDE_III_AR; cd00430"
/db_xref="CDD:143481"
misc_feature order(105899..105901,105905..105907,105917..105919,
106046..106048,106181..106183,106202..106204,
106289..106291,106394..106399,106442..106453,
106550..106552,106607..106609,106691..106696,
106820..106822)
/gene="alr"
/locus_tag="A1E_00455"
/note="active site"
/db_xref="CDD:143481"
misc_feature order(105899..105901,105905..105907,105917..105919,
106046..106048,106202..106204,106289..106291,
106394..106399,106442..106453,106820..106822)
/gene="alr"
/locus_tag="A1E_00455"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143481"
misc_feature order(105905..105910,105983..105985,105992..105997,
106109..106114,106196..106207,106289..106291,
106295..106297,106511..106522,106526..106528,
106538..106543,106547..106555,106592..106594,
106607..106609,106625..106627,106697..106702,
106808..106813,106820..106825,106847..106849)
/gene="alr"
/locus_tag="A1E_00455"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143481"
misc_feature order(105905..105907,105917..105919,106202..106204,
106289..106291,106550..106552,106607..106609,
106691..106696,106820..106822)
/gene="alr"
/locus_tag="A1E_00455"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143481"
misc_feature order(105905..105907,106550..106552)
/gene="alr"
/locus_tag="A1E_00455"
/note="catalytic residues [active]"
/db_xref="CDD:143481"
gene 107108..107887
/locus_tag="A1E_00460"
/db_xref="GeneID:5626512"
CDS 107108..107887
/locus_tag="A1E_00460"
/note="COG0767 ABC-type transport system involved in
resistance to organic solvents, permease component"
/codon_start=1
/transl_table=11
/product="ABC transporter permease protein"
/protein_id="YP_001491827.1"
/db_xref="GI:157803278"
/db_xref="GeneID:5626512"
/translation="MLLNIANAVGKRTIKFAQNIGSFSLFSFAAVSSIIRPPLYFSLI
IRQLLFIGFYSLPVVTMTTFFSGAVLALQSYNGFSRFSAESSIATVVVLSLTRELGPV
LVGLMVAGRVGASIAAEIATMRVTEQVDALYTLSTDPIKYLVFPRVITAMLTMPCLVL
IGDVIGVMGGYLVGVYKLGFNSTAYLTSTFQYLEPIDVISGLVKAGVFGFIISIISCY
SGYYSGKGAKGVGRATTSAVVNSSILILISNYLITELFFKV"
misc_feature 107234..107824
/locus_tag="A1E_00460"
/note="Permease; Region: Permease; pfam02405"
/db_xref="CDD:145511"
gene 107890..108651
/locus_tag="A1E_00465"
/db_xref="GeneID:5626275"
CDS 107890..108651
/locus_tag="A1E_00465"
/codon_start=1
/transl_table=11
/product="ribonucleotide ABC transporter ATP-binding
protein"
/protein_id="YP_001491828.1"
/db_xref="GI:157803279"
/db_xref="GeneID:5626275"
/translation="MSTKEEFKIKIRSLYKSFANHKVLDGIDLDVKNGSSLVILGGSG
SGKSVLIKNIVGLIKPDKGKIFINNVEIQDISSKRKFEIMDSIGFLFQGGALFDSLNV
RDNITFETKKLSKKEKNDLAGAKLNSVGLSPRILDLYPSELSGGMQKRVALARAICST
PSILFLDEPTTGLDPIMANVINELIIKIQEELGATMITITHDMIHAKKIAKEVAMIYQ
GKIKWYGSKDEMCNSDNPYLKQFINGLTTGPIDFN"
misc_feature 107890..108645
/locus_tag="A1E_00465"
/note="ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: Ttg2A;
COG1127"
/db_xref="CDD:31324"
misc_feature 107914..108612
/locus_tag="A1E_00465"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 108010..108033
/locus_tag="A1E_00465"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(108019..108024,108028..108036,108163..108165,
108388..108393,108490..108492)
/locus_tag="A1E_00465"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 108154..108165
/locus_tag="A1E_00465"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 108316..108345
/locus_tag="A1E_00465"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 108376..108393
/locus_tag="A1E_00465"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 108400..108411
/locus_tag="A1E_00465"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 108478..108498
/locus_tag="A1E_00465"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 108694..108942
/gene="alr"
/locus_tag="A1E_00470"
/db_xref="GeneID:5626276"
CDS 108694..108942
/gene="alr"
/locus_tag="A1E_00470"
/EC_number="5.1.1.1"
/note="COG1127 ABC-type transport system involved in
resistance to organic solvents, ATPase component"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_001491829.1"
/db_xref="GI:157803280"
/db_xref="GeneID:5626276"
/translation="MLRNLLCVIIFLGINLNVYSVNNSSYKADDIIKIVIILGIIILI
FSPAKFRIVVIGTILGLTFAYFTYKYIVPIFISLLNGP"
gene 109015..109308
/gene="rpmB"
/locus_tag="A1E_00475"
/db_xref="GeneID:5626277"
CDS 109015..109308
/gene="rpmB"
/locus_tag="A1E_00475"
/note="required for 70S ribosome assembly"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="YP_001491830.1"
/db_xref="GI:157803281"
/db_xref="GeneID:5626277"
/translation="MSRKCDLTGVGVLYGNNVSHSQRKTRRRFEPNLRSVKFKSDITS
GAYRLLVNARCISSVEKAGGFDAYILKADDNVLSSAARAIKKKIIQTKTAKSL"
misc_feature 109015..109245
/gene="rpmB"
/locus_tag="A1E_00475"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:178987"
gene 109305..109541
/locus_tag="A1E_00480"
/db_xref="GeneID:5626278"
CDS 109305..109541
/locus_tag="A1E_00480"
/note="RpmE; RpmE2; there appears to be two types of
ribosomal proteins L31 in bacterial genomes; some contain
a CxxC motif while others do not; Bacillus subtilis has
both types; RpmE is found in exponentially growing Bacilli
while YtiA was found after exponential growth; expression
of ytiA is controlled by a zinc-specific transcriptional
repressor; RpmE contains one zinc ion and a CxxC motif is
responsible for this binding; forms an RNP particle along
with proteins L5, L18, and L25 and 5S rRNA; found
crosslinked to L2 and L25 and EF-G; may be near the
peptidyltransferase site of the 50S ribosome"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L31"
/protein_id="YP_001491831.1"
/db_xref="GI:157803282"
/db_xref="GeneID:5626278"
/translation="MKSGIHPEYKKLLIKVGSDVFKTMSTHPTGEILMDVDFRKHPAW
NKDSGNVVNQSNKSVSDFNKRFSGLSFGSKKGAS"
misc_feature 109305..109538
/locus_tag="A1E_00480"
/note="50S ribosomal protein L31; Provisional; Region:
PRK01397"
/db_xref="CDD:179294"
gene 109832..109908
/locus_tag="A1E_t05688"
/db_xref="GeneID:5626279"
tRNA 109832..109908
/locus_tag="A1E_t05688"
/product="tRNA-Met"
/db_xref="GeneID:5626279"
gene 110321..110980
/gene="engB"
/locus_tag="A1E_00485"
/db_xref="GeneID:5626628"
CDS 110321..110980
/gene="engB"
/locus_tag="A1E_00485"
/note="binds guanine nucleotides; in Escherichia coli
depletion results in defective cell division and
filamentation; in Bacillus subtilis this gene is
essential"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTP-binding protein YsxC"
/protein_id="YP_001491832.1"
/db_xref="GI:157803283"
/db_xref="GeneID:5626628"
/translation="MTNNEKVINNKKSTDSSKLFRYQAKFVAGAMNINQIPNFLLPEI
AFIGKSNVGKSSLINTICNNKNLAKVSNIPGRTGQINFFNLADKLIIVDLPGYGFANV
PISVKEQWEVLISYYLRNSNNLRLVNLLIDSRRGIKENDKKVAELLLKNKRSFQIIFT
KFDKVTDCKNLTDEAQNFLTTLHYSCNVMYVSSRSKEGARELKASLAKCIIKPQRSKG
R"
misc_feature 110372..110950
/gene="engB"
/locus_tag="A1E_00485"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature 110447..110950
/gene="engB"
/locus_tag="A1E_00485"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature 110462..110485
/gene="engB"
/locus_tag="A1E_00485"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature order(110468..110488,110528..110536,110543..110551,
110597..110599,110801..110803,110807..110809,
110894..110899)
/gene="engB"
/locus_tag="A1E_00485"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature 110540..110560
/gene="engB"
/locus_tag="A1E_00485"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature 110549..110551
/gene="engB"
/locus_tag="A1E_00485"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature 110597..110608
/gene="engB"
/locus_tag="A1E_00485"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature order(110606..110617,110636..110680,110687..110692)
/gene="engB"
/locus_tag="A1E_00485"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature 110798..110809
/gene="engB"
/locus_tag="A1E_00485"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature 110894..110902
/gene="engB"
/locus_tag="A1E_00485"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene 111131..111256
/locus_tag="A1E_00490"
/db_xref="GeneID:5626629"
CDS 111131..111256
/locus_tag="A1E_00490"
/note="COG0218 Predicted GTPase"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_001491833.1"
/db_xref="GI:157803284"
/db_xref="GeneID:5626629"
/translation="MCSPKYIVRDHINLRSSSLISQIDENFSQKISKISDFWYFR"
gene 111737..112024
/locus_tag="A1E_00495"
/db_xref="GeneID:5626630"
CDS 111737..112024
/locus_tag="A1E_00495"
/note="COG3702 Type IV secretory pathway, VirB3
components"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB3"
/protein_id="YP_001491834.1"
/db_xref="GI:157803285"
/db_xref="GeneID:5626630"
/translation="MAGALASDLLFVGLTRPPMIFGVSIKFAALNMIMTMIFFIWNNG
IMILFIATALHLIAYIICFKEPRFIELYLNKMSRTSQCPNKFYYRANSYGI"
misc_feature 111737..112021
/locus_tag="A1E_00495"
/note="type IV secretion system protein VirB3;
Provisional; Region: PRK13899"
/db_xref="CDD:139959"
gene 112279..114696
/locus_tag="A1E_00500"
/db_xref="GeneID:5626631"
CDS 112279..114696
/locus_tag="A1E_00500"
/note="COG3451 Type IV secretory pathway, VirB4
components"
/codon_start=1
/transl_table=11
/product="type IV secretion system ATPase VirB4"
/protein_id="YP_001491835.1"
/db_xref="GI:157803286"
/db_xref="GeneID:5626631"
/translation="MKLFRTRAAKEFRSKQERPTSHFIPYKCHWDSNTILTKDNSLLQ
VIKINGFSFETADDEDLDIKKNIRNALLKNMSSGNIVMYFHTIRRRKAVIFDDTEFTY
DPTVKVPNDFITYLGVEWRKKHAGSKSFFNELYISILYKPDTGGAAIVEYFLKKLRQK
SNKIAWENDMKEMKENLQEMSTRVINTFRSYGARLLGVRQTPSGNYCEILEFLSSLVN
CGDSPGPIALPRGTIDEYLPTHRLFFDSRTIEARSPLGKKYAGIISILEYGPNTSAGI
FDGFLQMPFEFVMTQSFVFANRTVAIGKMQLQQNRMIQAGDKATSQIVEISTALDMAT
SGDIGFGEHHLSLLCSANSIKALEDILSMASVELSNSGIQPVREKVNMEPSYWGQLPG
NMEYIVRKSTINTLNMASFASQHNYPLGKIKDNHWGEYVTVLDTTSGTPFYFNFHVRD
VGHTLIIGPTGAGKTVLMNFLCAEAQKFKPRMFFFDKDRGAEIFIRALNGVYTVIDPG
LKCNFNPLQLEDTSENRTFILEWLRVLVTSNGESLTAQDNKILSQAVSGNFRLERKDR
RLSNVIAFLGIDTPNSLASRIAMWVGKGSHAKIFDNEIDDIDLQKARVFGFDMTELLK
DPISLAPVLLYIFHRINISLDGQKTMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTF
VIFATQSVEDAAKSRISDTLIQQTATQIFLPNLKATDIYRSAFMLSQREYILIKTTDP
TTRYFLIKQGVDAVVAKVNLDGMNNIISVLSGRVETVILLDQIREKYGNDPDKWLPIF
YEAVKTL"
misc_feature 112279..114693
/locus_tag="A1E_00500"
/note="type IV secretion system ATPase VirB4; Provisional;
Region: PRK13898"
/db_xref="CDD:172418"
misc_feature 112858..113475
/locus_tag="A1E_00500"
/note="CagE, TrbE, VirB family, component of type IV
transporter system; Region: CagE_TrbE_VirB; pfam03135"
/db_xref="CDD:111973"
misc_feature 113608..114336
/locus_tag="A1E_00500"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 113650..113673
/locus_tag="A1E_00500"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(113659..113664,113668..113676,113914..113916,
114238..114243)
/locus_tag="A1E_00500"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 113905..113916
/locus_tag="A1E_00500"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 114133..114162
/locus_tag="A1E_00500"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 114226..114243
/locus_tag="A1E_00500"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 114250..114261
/locus_tag="A1E_00500"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 114325..114336
/locus_tag="A1E_00500"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 114838..118152
/locus_tag="A1E_00505"
/db_xref="GeneID:5626035"
CDS 114838..118152
/locus_tag="A1E_00505"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="TrbL/VirB6 plasmid conjugative transfer protein"
/protein_id="YP_001491836.1"
/db_xref="GI:157803287"
/db_xref="GeneID:5626035"
/translation="MQLFPRSIIITLVISFVINLGLVTKTHAKDTLDSIIDVLSGLTC
ETQGVGDLLRSEFSHTCIVAPFFTFAVMNLVSPVLYMNTFLKLKINDNDLFSKNEHDD
FGYFPGGQCTRENRIDPNKPELRFALCSNAKLIVARAEAVAKSALAIAKAVLTGSDPW
DDIKEAWKNNKKDYYVPYSGKPGDDGFAFDVGFPVIYWKVIQDKDRICVSTKGFTGDV
PVGCKYMKEPFPKSMYNSFMDVGDKDLIENTNKTPTDPLALVSCSSAGGGCYQKAYNA
SKTAVVMTSPLIECIRQMIARLLISKDVCSFDNVSQVINLASRQDSALFQFQVRMYKI
VAAFLTLYVMFFGFKLLLAGEVPPKSEYINFILKMIFVTYFSIGINITPGSGSPYDRL
DGMIQWAFPFLLDGINALASWVMNAAPSNLCKFNGPGISYDGSVSYIALWDALDCRVA
HYLGLDILSTLLVENAYRSHDFLNFDFFSFSAPPYIYLLIPAIISGNMMLVSLALAYP
LLVISVAAFMVNATIMCMISIVILGILAPLFVPMFLFTYTRNYFDSWVKLMISFLLQP
MVVVTFMITMFSVYDYGFYGKCQYKSKLIHNSIENLAQGSTSSRDVLIFYINNDWNDK
SQYPTDEDVESCQNSLGYMLNNPITTAFNFTKNSVSEIVGSKSGDTSTDKFLAKFQFL
SGVILGPGMFFMSPKVVFEKIKNILLALVTACFTLYLMYHVSSQLAEFAADMTEGVAL
NNVAIKPQAIFKAAMALSATVAGAATKGLDQVASRRGGVSDLAGGLGGGVRDNVAASG
GVSAPKVMQTTLSSVATASPKTVSSEARSDVVTTTPASPEVVSLPSSIRSAISISEPQ
SNIKSESAGKIISDNNQESKKEIDNTPPLQEKVDNASKGSGVSDLAGGLGGGVRDNVA
ASGGVSAPKVMQTTLSSVATASPKTVSSEARSDVVTTTPASPEVVSLPSSIRSAISIS
EPQSNIKSESAGKIISDNNQESKKEIDNTPPLQEKVDNASKGSGVIDYSFNLKEHDNP
TGVKQIRENAEIRDKRAEVEKAWNELVASGGGRIRDQQGEEISERRANAEKVWDELVK
NGVVTEKKDNSSNENS"
misc_feature 115696..117162
/locus_tag="A1E_00505"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 118139..120157
/locus_tag="A1E_00510"
/db_xref="GeneID:5626036"
CDS 118139..120157
/locus_tag="A1E_00510"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="TrbL/VirB6 plasmid conjugative transfer protein"
/protein_id="YP_001491837.1"
/db_xref="GI:157803288"
/db_xref="GeneID:5626036"
/translation="MKTLKTLKIFIMVCIASVSLASFAGFGESCSSLPATSDKYLETD
TAYGYIIRNIDMKDPRGNCDSAVPGITFCFKNIEGSSSPCTMYTLNEGDSKKISDLST
DNNPDLGANPVLQNIVLTVKKLDNDLCLIMPTSRGPMPVACKSLSANPPPNPSDYENC
NIGKNCYTGASYSQSLINFSGLAVQCLSETLNKIFFVGNSCSSQDQNSRITNLAAFST
FQGYLKRTIGAALILYIMFFAFNMALNKEYASTEKIALFIIKFLFVAYFSIGLGPLDF
SSGQPTKENGMLKYGLPLLTGAAPDFAQMIFNAAGARGLCQFDNSKYKDGYKFYGLWD
AIDCRIGYYLGLDLLYNIDKNRVLGRSVGNGPSGNNEKIPNLGNPDKNSPNDLSKAGS
LRFFTVMFGFFMAGNVIIFAAGLVFSVIFLSILLYFITHYLVCMVTIYVMTYVSPIFI
PMALFTRTKAYFDGWLKVCISCTLQPSVIAGFIALLITMYDSAIFKNCEFLRHDYEKG
DIRFSTFELRLPISAADKCQESFGYKMLQYYAGEGWEEHLLILFPIKSIVRDVVSILA
ELLYVLVFSVIFYYFSKSIGRFAADLTNGPNMDAVNARSTKIVDLVKKGAAFLKDAAI
ASQGKPLVGHKLSGGSRRKGRVQSDDTLGSHGRSSDNAKDALSTSRGK"
misc_feature 118685..120082
/locus_tag="A1E_00510"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 120164..123070
/locus_tag="A1E_00515"
/db_xref="GeneID:5626037"
CDS 120164..123070
/locus_tag="A1E_00515"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="VirB6-like protein of the type IV secretion
system"
/protein_id="YP_001491838.1"
/db_xref="GI:157803289"
/db_xref="GeneID:5626037"
/translation="MQSNLLKVLGVLAIVATLVCFIFAALGMIGAVKIGNGCYMRYDA
DGKGGRDSITDTITLNANANYVYTSKMLSDGTTRLIPDPTRYGEWLNTKVLVENSQSV
NLQVVGQVSLCLAYIPQDNVQRTGPGSNLDDNGKMIPIPRVTDSNIPPISLIMDAKNS
EWRNIAELYANDRVLVSISPNFIGTEATVNDAFKGTAVTTDCSQGKTSYEPICGKYSF
YSGQYVNACELKQNYWQGNQHREPCHCVFGCIYQEAVAKWVCDSANAASHCCLSLVCD
SLPAWINHYGTMPESYKDDGSFTFSWSDNLGNLFIDYSNLQCSNNANILPNGKCPDVV
SNRSPKDKDYIGGVHCTSGICNDGDFQKHRRFWYTADGKGGKGPTGLIYQMNDTGSVS
QALPSNLEFAKFVADSDQLPEYKDKDGKYIYKVIYNIPFNSNIEKSYLQYRLWSPTSQ
DASKNTGGYVLNIKQTKCYRENGNSFNDTFNDRGRVQYIIVAGSENPNTSGKSYSPQG
INVDSDGKANIIANGDGYIWMRILNDSNDYKDSDGNYKVHFSTFLKVGSFTVKVMNPL
LQLFKTKVQGAATSIFRNMVCYKASDSSSCTNFFTYIKAILILYVMTYGAMFLLGFTK
INQKELVIRIAKIGVVSGLINGNTFEFFNSYLFDVITGFSDAIIANMSGYSLFTSTNT
ISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFIITFIALGIVIVTALRAMA
VYIMAFMVTCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMIEPVIMMAGIIVLTQ
LFTIYLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMM
GVNMQNIVALVIIAYGMYGYVEFSGRMVVKLTSAAGPSATGMGEAMYNVAEQKTLSQV
GMDAETRKGITGRAESRLKQRNKTLDQAEKNRKHTPQEGGEKTNEEPPKPETLK"
misc_feature 121535..122986
/locus_tag="A1E_00515"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 123077..125743
/locus_tag="A1E_00520"
/db_xref="GeneID:5626038"
CDS 123077..125743
/locus_tag="A1E_00520"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491839.1"
/db_xref="GI:157803290"
/db_xref="GeneID:5626038"
/translation="MMKILKSLVVLVLFMTVPAKAVDTFSWMSTSFSGLKSLFGCLEV
PEFTSFQEGNIGISLSTAGTWQSTGNAVKKGKLLKINWSTSGITPEPRKYLVLYRIDP
RFSTPQVFIKTYNYTKLQFEALGFPRFVTGNNGAIPPDKDLDALSFTKMSDSVKYFNY
SNGHSRIQVNAGDVVNISLVSKDKFFSPNTPKLPNTVDNILTQELDSSVFAASALYTQ
SNLGNFDNRIIYLSAEQVCNMIDASRTSVCRGTGTATKYKNTDNGVIVGKPMRTGAVE
HFMGLINSCPANAGIDTSPACYYDQGRGMIIKVGRQVIKGRDQRFVNSGSTHSSFIYY
QATSGGTMDFTSDWSSTGMFDKSVLMSDWSRNYSGDYNRFVNDINKNDWSANFLYFGR
YVMIVEIGNGTNSISPGDHQNIKLEYLITPNGTLPDSSVRGMPVDYNFATDALQDGYL
WLRVVNPNSNIQGVVSVNYANYTGTTWFSDIVYYGVIKPITDQFRTFSQNFYIKLVKN
SAVQNIAKAALTLYVTIFGLMFVAGALKLTAVEVITRICKIAIVAFLLREESWDFFNT
YFFSVFTNAIDFFVTNVVGATSSRSNIFGFIDPIFDKYTNGRIWGLLFIELLQIHNGL
AFISVITIYSLITYFRAILEVIIGYVIAFVGVTVMISLAPFFIILMLFEKTKSLFDNW
ISILLSYVVQPTILLIFFLLIDQVLSEQLLKVVVRACWDTLIPIKIGLDLTHLGIPIN
FSFTLPFLPGIPFFVPDVPEISSSNILTNNANTFLVLFTTALLFYSYCLMSYGLVTFV
NVVVGMLTNVTPARISGNYQERSDPVGAIMHDIDSVTKPIKKTTIVPARVFKDKIIDQ
NYKARKPEGGGEYTNKFLAERNDRKKEEEVRK"
misc_feature 124229..125662
/locus_tag="A1E_00520"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 125852..129292
/locus_tag="A1E_00525"
/db_xref="GeneID:5626039"
CDS 125852..129292
/locus_tag="A1E_00525"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491840.1"
/db_xref="GI:157803291"
/db_xref="GeneID:5626039"
/translation="MNKNIFITLLISLLLLSSCTGDTCIDPDDFGFIKFNISSRYDLE
EITSRQEGDQVAPWRNSAYKVNGYPLTVMVRPWSYILGDKNTSGQLSAWCPWYGQKND
TTTLAALCVKLQPCLFIDNDMCRPSPINQNDAAIYNAPCIMTNGVGLYFLIAAKNTDP
NISPDSQRKPQGITQHLGEPPPNNDYAFYSISSTGQFLKAGGINYQYKGEDKSKYAQC
PLYFKIIDKFYNDNSGQYRLVIKSGISDTRPDPLQFLTNLIKKVLFGTSDQDHGIVRK
VYTQIIDTSGYRMSVSAILTLYIMFTGFSFLIGNINLTHVELIIRILKVSIVSILLST
DKAWTFFHDYLFVFFIDGVQQILQIINEASANGPGSQTLLGLLIAPQTLSKLFSLLFV
DWLGFIYIILYFIALYFIFLLIFKATIIYLTALIIIGMIITMGPIFICFMLFNITRSL
FENWLRQLISYAIQPLILFAGIAFISMIIRTEIYSTLGFAVCKHDFPNLGPINEIFGS
FLEDIDPSLGNSIFYWWFPVPMKGGINNFHKAKILVPEDHIRDDGKHCAAYECIDERY
IELPFLDLVKDAKRISNFINGKFVQLDGILLIFVSIYLLSKFNDIAISTAAFIAGTSG
NLTDIQKVNQQSASLATKQMNRPLNYVAKTLSAPVTTRVSAKLEETSMFFAAKFENMM
MRRLENQALGSAANKAVQNEVKRKYGIDSKDVKMNAITDYENSISGLLENLPKGNELK
AKELSQMKFTQLRDKIAENKYGVKDYDSLSKEQKTELDKLLKDANLRELASDANFTRD
YQKAYKDAHQDMSGRGIGLFGKNIGVLRSWQEMQHRVKSKRALKEQKRVGIGEKIYAG
YTGITRAALTAIVGKDLRDAYEGNLTSAEWHDFEYNDPRLRTYSEKLKDEEKVREFQE
LQMHINKETLAAQADVLSPEYLARLEQTGRQSDVEYYQELAQRKLIHEVRSRLSEEDD
PVMMGDRFMREKATDSQMRDMIDNAHRKYVQFIDEDRYIRRQEYYDIMHEKAQENLEQ
TYKELKDHFKRDDIKLEEMPVLIAQKFKDTDGGAEIDKKITEEINNFNANVNNYEYST
EVLNKIEDRKQVITDEVNAQINQINKYRENAKMQTYVKPIVNKGRKLRKLEDHLRNMK
"
misc_feature 126293..127492
/locus_tag="A1E_00525"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 130793..130897
/locus_tag="A1E_00540"
/db_xref="GeneID:5626696"
CDS 130793..130897
/locus_tag="A1E_00540"
/codon_start=1
/transl_table=11
/product="GTPase EngB"
/protein_id="YP_001491841.1"
/db_xref="GI:157803292"
/db_xref="GeneID:5626696"
/translation="MTSAMPTTIDIAALSKMADCGQITNAIVDGPLAL"
misc_feature <130796..>130894
/locus_tag="A1E_00540"
/note="Phosphate acetyl/butaryl transferase; Region:
PTA_PTB; cl00390"
/db_xref="CDD:212210"
gene 130964..131041
/locus_tag="A1E_00545"
/db_xref="GeneID:5626697"
CDS 130964..131041
/locus_tag="A1E_00545"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491842.1"
/db_xref="GI:157803293"
/db_xref="GeneID:5626697"
/translation="MRAKQLKYLDQAVMTGIVLETRRLF"
misc_feature <130964..131029
/locus_tag="A1E_00545"
/note="Phosphate acetyl/butaryl transferase; Region:
PTA_PTB; cl00390"
/db_xref="CDD:212210"
gene 132049..132165
/locus_tag="A1E_00550"
/db_xref="GeneID:5626698"
CDS 132049..132165
/locus_tag="A1E_00550"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491843.1"
/db_xref="GI:157803294"
/db_xref="GeneID:5626698"
/translation="MMQKTKKTIISTKDSRIKVFAVLMNEELILAEEVMKFL"
gene 132389..132664
/locus_tag="A1E_00555"
/db_xref="GeneID:5626699"
CDS 132389..132664
/locus_tag="A1E_00555"
/note="COG0280 Phosphotransacetylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491844.1"
/db_xref="GI:157803295"
/db_xref="GeneID:5626699"
/translation="MKQQIIAEKASKDYNKVLEIDYKAAKAGIKLDKTAMRRLDKIIS
TCFKQLRRKVILNNIKAIMLIERVNKKLKYLGVVQQLLLESKKKRKL"
gene 132753..133415
/gene="trmD"
/locus_tag="A1E_00560"
/db_xref="GeneID:5626700"
CDS 132753..133415
/gene="trmD"
/locus_tag="A1E_00560"
/EC_number="2.1.1.31"
/note="methylates guanosine-37 in various tRNAs; uses
S-adenosyl-L-methionine to transfer methyl group to tRNA"
/codon_start=1
/transl_table=11
/product="tRNA (guanine-N(1)-)-methyltransferase"
/protein_id="YP_001491845.1"
/db_xref="GI:157803296"
/db_xref="GeneID:5626700"
/translation="MFPGTLGYSLAGQALHKNIWSYDIINIRDFGLTKHKNIDDAAYG
GGDGLIMRPDVLGNSIDHALSLNSNAKIYYPSPRGRVFTQSFAKEMIKTKNIIFLCGR
YEGIDERVIQEYSIMEISVGDYILSGGEIPTLTILDCLIRLLPGVLINQNTLSSESFE
EDGEFKGGLECGLYTRPEVWRGIKVPEILLSGNHKLINEWKREQSRMITKSRRPELLK
DL"
misc_feature 132753..133412
/gene="trmD"
/locus_tag="A1E_00560"
/note="tRNA (guanine-N(1)-)-methyltransferase; Reviewed;
Region: trmD; PRK00026"
/db_xref="CDD:178803"
gene 133672..134088
/gene="rplS"
/locus_tag="A1E_00565"
/db_xref="GeneID:5626390"
CDS 133672..134088
/gene="rplS"
/locus_tag="A1E_00565"
/note="this protein is located at the 30S-50S ribosomal
subunit interface and may play a role in the structure and
function of the aminoacyl-tRNA binding site"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L19"
/protein_id="YP_001491846.1"
/db_xref="GI:157803297"
/db_xref="GeneID:5626390"
/translation="MNIIDSFEQKNIAKLTANKNIPDFEAGDTVKVTVKIIDRSIEKD
GKEKLTERFQAYEGVVIAKRNRGITSSFLVRKISHGEGVERRFMTYSPIVHSIDVVKY
GVVRRAKLYYLRNRSGKSARIKERHIPIAKNQAVKA"
misc_feature 133672..134049
/gene="rplS"
/locus_tag="A1E_00565"
/note="50S ribosomal protein L19; Provisional; Region:
rplS; PRK05338"
/db_xref="CDD:180025"
gene complement(134364..134600)
/gene="rplS"
/locus_tag="A1E_00570"
/db_xref="GeneID:5626391"
CDS complement(134364..134600)
/gene="rplS"
/locus_tag="A1E_00570"
/note="COG3750 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491847.1"
/db_xref="GI:157803298"
/db_xref="GeneID:5626391"
/translation="MSEVVVKEQLEQYISKIERLEQEKADLLEEIKNIFQDASSHGFD
VKAMKSILKLKKLDKDKLAEQDAMLELYRDTLGI"
misc_feature complement(134367..134600)
/gene="rplS"
/locus_tag="A1E_00570"
/note="hypothetical protein; Provisional; Region:
PRK13694"
/db_xref="CDD:184250"
gene 134672..135604
/gene="secF"
/locus_tag="A1E_00575"
/db_xref="GeneID:5626392"
CDS 134672..135604
/gene="secF"
/locus_tag="A1E_00575"
/note="forms a complex with SecD and YajC; SecDFyajC
stimulates the proton motive force-driven protein
translocation; seems to modulate the cycling of SecA by
stabilizing its membrane-inserted state and appears to be
required for the release of mature proteins from the
extracytoplasmic side of the membrane; in some organisms,
such as Bacillus subtilis, SecD is fused to SecF"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecF"
/protein_id="YP_001491848.1"
/db_xref="GI:157803299"
/db_xref="GeneID:5626392"
/translation="MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISVISIGIYKF
NFGIDFVGGIVIEVRLDQTPDLPKMRQILGELGIGEVVLQNFGSERDLSIRLGSSSEA
NLMENIELIKASLHNNFPYKFEYRKVDFVGPQVGRQLIEAGTMAMLFSFLAIMVYIWV
RFEWYFGLGILIALMHDLILALGFMSMTKLDCNLSTIAAVLTIIGYSVNDSVVIYDRI
RENLRKYYKKNITEIINLSINETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFF
GIIAGTYSSIFISAPILTMFANKKFNNKKFNNKR"
misc_feature 134705..135559
/gene="secF"
/locus_tag="A1E_00575"
/note="preprotein translocase subunit SecF; Reviewed;
Region: secF; PRK13022"
/db_xref="CDD:183847"
misc_feature <134801..134869
/gene="secF"
/locus_tag="A1E_00575"
/note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549"
/db_xref="CDD:116168"
misc_feature 135002..135559
/gene="secF"
/locus_tag="A1E_00575"
/note="Protein export membrane protein; Region: SecD_SecF;
pfam02355"
/db_xref="CDD:111266"
gene 135718..136980
/locus_tag="A1E_00580"
/db_xref="GeneID:5626393"
CDS 135718..136980
/locus_tag="A1E_00580"
/note="part of NADH-ubiquinone oxidoreductase complex I;
shuttles electrons from NADH, via FMN and iron-sulfur
(Fe-S) centers, to quinones in the respiratory chain; NuoF
is part of the soluble NADH dehydrogenase fragment, which
represents the electron input part of NADH dehydrogenase"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase I subunit F"
/protein_id="YP_001491849.1"
/db_xref="GI:157803300"
/db_xref="GeneID:5626393"
/translation="MLKEEDKIFINLHGQQSHDLKSSKKRGDWDNTKALLDKGRDFII
EEVKQSGLRGRGGAGFSTGMKWSFMPKNSEKPCYLVVNADESEPGTCKDRDILRFEPH
KLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCN
IYLHCGAGAYICGEETALLESLEGKKGMPRLKPPFPASFGLYGCPTTINNVESIAVVP
TILRRGANWFASIGKPNNTGTKVFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGG
WNNLKAIIPGGSSVPLIPKSICETVDMDFDSLRTAGSGLGTGGIIVMNQSTDIVYAIA
RLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNAKKSEIDQLLSVTKAIEGHTICA
LGDAAAWPIQGLIRHFRDEIEERICHLM"
misc_feature 135718..136965
/locus_tag="A1E_00580"
/note="NADH dehydrogenase I subunit F; Provisional;
Region: PRK13596"
/db_xref="CDD:184170"
misc_feature 136438..136596
/locus_tag="A1E_00580"
/note="SLBB domain; Region: SLBB; pfam10531"
/db_xref="CDD:204505"
misc_feature 136705..136842
/locus_tag="A1E_00580"
/note="NADH-ubiquinone oxidoreductase-F iron-sulfur
binding region; Region: NADH_4Fe-4S; smart00928"
/db_xref="CDD:197996"
gene 137144..137941
/gene="secF"
/locus_tag="A1E_00585"
/db_xref="GeneID:5626394"
CDS 137144..137941
/gene="secF"
/locus_tag="A1E_00585"
/note="COG0681 Signal peptidase I"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecF"
/protein_id="YP_001491850.1"
/db_xref="GI:157803301"
/db_xref="GeneID:5626394"
/translation="MQIDTKTNTNKTTAQEWKSFAFVVCIALLIRILIMEPFTVPTGS
MKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGRIFACEPERGDIVVFRPPNDMS
VRYIKRLIGLPGDKIQLIDDIIYINDKKIERTEVGTYISEEGRKYLKFKETLPNGRTY
FSYKLAPIFGVISDDRYGNTDVFYVPEGKYFFLGDNRDQSNDSRVNLGFVPFENFIAK
AQFIWFSTKITWWDNDIGVINLILKLKPWIESVRLNRIFRNLYNTDE"
misc_feature 137195..137818
/gene="secF"
/locus_tag="A1E_00585"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:211726"
misc_feature 137249..>137479
/gene="secF"
/locus_tag="A1E_00585"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature order(137273..137275,137462..137464)
/gene="secF"
/locus_tag="A1E_00585"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
misc_feature 137600..137800
/gene="secF"
/locus_tag="A1E_00585"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
gene 137941..138624
/gene="rnc"
/locus_tag="A1E_00590"
/db_xref="GeneID:5625998"
CDS 137941..138624
/gene="rnc"
/locus_tag="A1E_00590"
/EC_number="3.1.26.3"
/note="cytoplasmic enzyme involved in processing rRNA and
some mRNAs; substrates typically have dsRNA regions; forms
a homodimer; have N-terminal nuclease and C-terminal
RNA-binding domains; requires magnesium as preferred ion
for activity"
/codon_start=1
/transl_table=11
/product="ribonuclease III"
/protein_id="YP_001491851.1"
/db_xref="GI:157803302"
/db_xref="GeneID:5625998"
/translation="MSSFNELEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYER
LEFLGDAVLNLVITKILFSNFASYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMT
YGEEVAGGRDNPNNIENATEALIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPK
TALQEWAQASDHHLPIYCLIKREGAAHSSTFTVLVKVKDYEQIGIGYSIKEAEKNAAR
SLLHRLKND"
misc_feature 137941..138621
/gene="rnc"
/locus_tag="A1E_00590"
/note="ribonuclease III; Reviewed; Region: rnc; PRK00102"
/db_xref="CDD:178863"
misc_feature 137995..138390
/gene="rnc"
/locus_tag="A1E_00590"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:29697"
misc_feature order(138067..138072,138079..138084,138091..138093,
138100..138105,138112..138117,138121..138129,
138157..138159,138325..138327,138352..138354)
/gene="rnc"
/locus_tag="A1E_00590"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29697"
misc_feature order(138067..138069,138076..138078,138088..138090,
138295..138297,138304..138306)
/gene="rnc"
/locus_tag="A1E_00590"
/note="active site"
/db_xref="CDD:29697"
misc_feature order(138076..138078,138295..138297,138304..138306)
/gene="rnc"
/locus_tag="A1E_00590"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29697"
misc_feature 138412..138612
/gene="rnc"
/locus_tag="A1E_00590"
/note="Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III; Region:
DSRM; cd00048"
/db_xref="CDD:28930"
misc_feature order(138412..138414,138430..138435,138559..138570,
138577..138579)
/gene="rnc"
/locus_tag="A1E_00590"
/note="dsRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:28930"
gene 138617..139504
/gene="era"
/locus_tag="A1E_00595"
/db_xref="GeneID:5625999"
CDS 138617..139504
/gene="era"
/locus_tag="A1E_00595"
/note="Era; Escherichia coli Ras-like protein; Bex;
Bacillus Era-complementing segment; essential protein in
Escherichia coli that is involved in many cellular
processes; GTPase; binds the cell membrane through
apparent C-terminal domain; mutants are arrested during
the cell cycle; Streptococcus pneumoniae Era binds to RNA
and Escherichia coli Era binds 16S rRNA and 30S ribosome"
/codon_start=1
/transl_table=11
/product="GTP-binding protein Era"
/protein_id="YP_001491852.1"
/db_xref="GI:157803303"
/db_xref="GeneID:5625999"
/translation="MTKQIQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR
SIITGIITLKDTQVILYDTPGIFEPKGTLEKAMVRCAWSSLHSADLVMLIIDSLKPFD
DVTHNILDKLCSLNIVPVFLLNKIEIESKYLNNLKAFLTENHPDSLLFPISALSGKNI
DRLLEYITSKAKIAPWLYAEDDITDLPMRFIAAEITREQLFLNLQQELPYKLTVQTEK
WEELKDKSVKINQVIVVARESYKTIILGKNGSKIKEIGAKSRMQMEQFFSCPIHLFLF
VKVRELWENNQEFYQYMKI"
misc_feature 138647..139495
/gene="era"
/locus_tag="A1E_00595"
/note="GTPase Era; Reviewed; Region: era; PRK00089"
/db_xref="CDD:178854"
misc_feature 138647..139129
/gene="era"
/locus_tag="A1E_00595"
/note="E. coli Ras-like protein (Era) is a multifunctional
GTPase; Region: Era; cd04163"
/db_xref="CDD:206726"
misc_feature 138659..138682
/gene="era"
/locus_tag="A1E_00595"
/note="G1 box; other site"
/db_xref="CDD:206726"
misc_feature order(138665..138685,138725..138727,138737..138745,
138809..138811,138986..138991,138995..138997,
139073..139078)
/gene="era"
/locus_tag="A1E_00595"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206726"
misc_feature order(138704..138706,138710..138754)
/gene="era"
/locus_tag="A1E_00595"
/note="Switch I region; other site"
/db_xref="CDD:206726"
misc_feature 138743..138745
/gene="era"
/locus_tag="A1E_00595"
/note="G2 box; other site"
/db_xref="CDD:206726"
misc_feature order(138797..138814,138872..138877)
/gene="era"
/locus_tag="A1E_00595"
/note="Switch II region; other site"
/db_xref="CDD:206726"
misc_feature 138800..138811
/gene="era"
/locus_tag="A1E_00595"
/note="G3 box; other site"
/db_xref="CDD:206726"
misc_feature 138986..138997
/gene="era"
/locus_tag="A1E_00595"
/note="G4 box; other site"
/db_xref="CDD:206726"
misc_feature 139073..139081
/gene="era"
/locus_tag="A1E_00595"
/note="G5 box; other site"
/db_xref="CDD:206726"
misc_feature 139235..139465
/gene="era"
/locus_tag="A1E_00595"
/note="KH domain; Region: KH_2; pfam07650"
/db_xref="CDD:203707"
gene 139628..140170
/gene="ruvC"
/locus_tag="A1E_00600"
/db_xref="GeneID:5626000"
CDS 139628..140170
/gene="ruvC"
/locus_tag="A1E_00600"
/note="endonuclease; resolves Holliday structures; forms a
complex of RuvABC; the junction binding protein RuvA forms
a hexameric ring along with the RuvB helicase and
catalyzes branch migration; RuvC then interacts with RuvAB
to resolve the Holliday junction by nicking DNA strands of
like polarity"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase"
/protein_id="YP_001491853.1"
/db_xref="GI:157803304"
/db_xref="GeneID:5626000"
/translation="MESWIPAFVGLTSESCIKNKIITMIVLGIDPALGSLGWAVVVRQ
STKLKYLASGTIKTNSKDEIHHRLAFINITLEKVILEYQPNMAAIEEIFVNTNSLTSL
KLGYARGVIMSLIGRYNLGLREFKPNMVKKSVTGYGHAEKEQILHMIKLLLPGTSLIT
NSDEGDAIAIAYTCLVTKSY"
misc_feature 139700..140161
/gene="ruvC"
/locus_tag="A1E_00600"
/note="Holliday junction resolvases (HJRs) are
endonucleases that specifically resolve Holliday junction
DNA intermediates during homologous recombination. HJR's
occur in archaea, bacteria, and in the mitochondria of
certain fungi, however this CD includes...; Region:
RuvC_resolvase; cd00529"
/db_xref="CDD:29627"
misc_feature order(139715..139717,139895..139897,140114..140116,
140123..140125)
/gene="ruvC"
/locus_tag="A1E_00600"
/note="active site"
/db_xref="CDD:29627"
misc_feature order(139727..139729,139796..139798,139913..139915,
139934..139936,140009..140011,140018..140020,
140051..140053)
/gene="ruvC"
/locus_tag="A1E_00600"
/note="putative DNA-binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29627"
misc_feature order(139832..139834,139841..139843,139904..139906,
139919..139921,139928..139933,139940..139945,
139949..139954,139961..139963,139973..139978)
/gene="ruvC"
/locus_tag="A1E_00600"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29627"
gene 140172..140864
/locus_tag="A1E_00605"
/db_xref="GeneID:5626001"
CDS 140172..140864
/locus_tag="A1E_00605"
/note="COG0565 rRNA methylase"
/codon_start=1
/transl_table=11
/product="tRNA/rRNA methyltransferase"
/protein_id="YP_001491854.1"
/db_xref="GI:157803305"
/db_xref="GeneID:5626001"
/translation="MNPIIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQ
ARSNAVGAVNIIDNTKIYDNLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLSLDYPNS
AKVGIMFGRENNGLSNEEISLANKIITINTTEFSSLNIAQAVIIICYELFRNFTLRED
IHNIQKLATKEEIEHFLTNLFGKLDKLGFFKAPDKKPAMQQNITNIFTRINNLSSHEV
QILQGIIKSLYT"
misc_feature 140172..140861
/locus_tag="A1E_00605"
/note="rRNA methylase [Translation, ribosomal structure
and biogenesis]; Region: LasT; COG0565"
/db_xref="CDD:30911"
misc_feature 140172..>140624
/locus_tag="A1E_00605"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
cl00362"
/db_xref="CDD:212202"
gene complement(141014..142102)
/locus_tag="A1E_00610"
/db_xref="GeneID:5626002"
CDS complement(141014..142102)
/locus_tag="A1E_00610"
/note="COG3660 Predicted nucleoside-diphosphate-sugar
epimerase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491855.1"
/db_xref="GI:157803306"
/db_xref="GeneID:5626002"
/translation="MKIYVLTDERTGNTHQAIALAEKLATDYTLIKLQYNCLAKLPNF
LLKYYPIHIKSELLQDILDQSLPDMIIAAGRRTTVLAFYLKKKFKDIKLIQIMQPNLP
YNIFDAVILPYHDCHLSSSRNLIAGSSKNSKIINTINYFLDIVVKPRYDKVDSSFRGN
DIKHKNIIAINGAINNVTDKFAAVSLELQKYYPDLKQFIAVIIGGNNKKFNFNKDEAI
LFSSLLNKIYTNQKIPFFISFSRRTPLEVKSIIKNNMPSSTIIYDPNKDIGYNPYIAM
LANAKYIIVTADSISMCSEAASSGKPLYIFHPPNFNSSKHKIFIKQLVEQKIARIFDE
SVISLEEYNYKSLNESERVAEIIKSLIK"
misc_feature complement(141017..142102)
/locus_tag="A1E_00610"
/note="Predicted nucleoside-diphosphate-sugar epimerase
[Cell envelope biogenesis, outer membrane]; Region:
COG3660"
/db_xref="CDD:33458"
misc_feature complement(141032..142069)
/locus_tag="A1E_00610"
/note="Mitochondrial fission ELM1; Region: Mito_fiss_Elm1;
pfam06258"
/db_xref="CDD:191482"
gene complement(142099..143205)
/locus_tag="A1E_00615"
/db_xref="GeneID:5625809"
CDS complement(142099..143205)
/locus_tag="A1E_00615"
/note="COG0489 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="Mrp protein"
/protein_id="YP_001491856.1"
/db_xref="GI:157803307"
/db_xref="GeneID:5625809"
/translation="MAKLHQRQIIDKIQNITFKDGTFLKQVISDIVIKDNNIGFSIDI
SGKTKLEAEEIRLKAINKLNKISEIGNITIVFTSHKTSERKSQKPKHFVENVKKIILV
ASGKGGVGKSTISALIAQQLSLENYRVGIVDADIYGPSIPHIFGINEVPKTIKGQIIP
ITAKNRYLSKFAYREEFEGNTEHSTTTYKEVCKDASTGSTYKLPLELKFGKISTIQIM
SIGFFVKDYSAIIWRGPMASKTIYQLLSVTKWDNLDYLIIDMPPGTGDIHLSILENYH
LDGVIIVTTPQKISEIDVIRSIDLYQKLGLPILGIIENMSYMLEDNSGHHLSQKYNIP
LMAQIPITLQIADACDKSLPLTDLLTLPLEKYLS"
misc_feature complement(142159..143085)
/locus_tag="A1E_00615"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Mrp;
COG0489"
/db_xref="CDD:30835"
misc_feature complement(<142771..142911)
/locus_tag="A1E_00615"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(142573..142710)
/locus_tag="A1E_00615"
/note="Rickettsial palindromic element RPE1 domain;
Region: RPE1; TIGR01045"
/db_xref="CDD:162172"
misc_feature complement(142183..>142515)
/locus_tag="A1E_00615"
/note="MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions...; Region:
MRP-like; cd02037"
/db_xref="CDD:73300"
gene 143306..144346
/locus_tag="A1E_00620"
/db_xref="GeneID:5625810"
CDS 143306..144346
/locus_tag="A1E_00620"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="protease activity modulator HflK"
/protein_id="YP_001491857.1"
/db_xref="GI:157803308"
/db_xref="GeneID:5625810"
/translation="MLNKKYILILKKSPWQDFDSNKVDNIFTRPRKNQFNFDKFQFQF
NFNAKTIILAIVVVAALWLASGIYEIKEGEEAAVIRFGRFVRKGYPGLNYHLPAPFEK
IIVEKVKQSRRIEIGYRTNSSIRSGGDNTKNIAGESIMLTGDENIVALNCDVMWHINN
LEDFIFNVQRPEETVKATVESAVREVIGNTPISWVLSDQKQEITYKIEKLAQKILDSY
NAGVMIEKVQLLKAEPPAEVIDAYRDVQTSKADKEKEINQAQAYNNKILPEARGAAAK
IIQEAEGYREEVISKAEGDSQRFNAIYKQYTTGRQVTRDRLYLEVAEEILSGSNKTII
NNVLLPHMAIKP"
misc_feature 143498..144283
/locus_tag="A1E_00620"
/note="Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflK; cd03404"
/db_xref="CDD:48216"
misc_feature 143504..144310
/locus_tag="A1E_00620"
/note="HflK protein; Region: hflK; TIGR01933"
/db_xref="CDD:130988"
gene 144517..145377
/locus_tag="A1E_00625"
/db_xref="GeneID:5625811"
CDS 144517..145377
/locus_tag="A1E_00625"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="hflc protein (hflc)"
/protein_id="YP_001491858.1"
/db_xref="GI:157803309"
/db_xref="GeneID:5625811"
/translation="MQQKVYYIIFTIVFGLMLISSSLFSVDQRQSAVVFQFGEAVRTI
ENPGLHIKIPFIQNVEFFDKRLLDVEVEAKELTAADGKRVIVDAYAKFQINNPVMFYK
TVHNYQGVKIRLTRNLESSMRKVIGKISLSTLLSQERSNVMLNILNQVDGEAKSFGIN
VVDVRILRADLPQENSAAIYRRMQTAREKEATQIRAEGQEESVRIRSKADKESKIILA
KAYRDAQIIKGDGDEKAAKIYNAAYSVDPEFYKFYRSLLVYKNSLKKEDTKFVISPEA
EVFKYLNLAK"
misc_feature 144538..145365
/locus_tag="A1E_00625"
/note="FtsH protease regulator HflC; Provisional; Region:
PRK11029"
/db_xref="CDD:182913"
misc_feature 144583..145305
/locus_tag="A1E_00625"
/note="Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflC; cd03405"
/db_xref="CDD:48217"
gene 145398..146933
/gene="ruvC"
/locus_tag="A1E_00630"
/db_xref="GeneID:5625812"
CDS 145398..146933
/gene="ruvC"
/locus_tag="A1E_00630"
/EC_number="3.1.22.4"
/note="COG0265 Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase"
/protein_id="YP_001491859.1"
/db_xref="GI:157803310"
/db_xref="GeneID:5625812"
/translation="MFKYIFAVIVIILLNNAVLAKENIKKPGKILEENEFTEINSVPL
KVSEAARYSFADIVEPLIPAVVNISTIEYVNSKSENAEKDPLQEKKPLDFINDFLERL
NIPLNLEEVDQNPKNVPLGSGFIIEPNGLIVTNYHVIANVEKINIKLADNTELPAKLI
GSDTKTDLALLKIDREEPLPFVEFGDSNDARVGDWIIAIGNPFGNLGGTVTAGIISSK
GRDIDIDTDNIVDNFIQTDAAINNGNSGGPMFNWDQKVIGVNTAIFSPLGTNIGIGFA
IPSNTAKPIIERLKKDGKINRGRLGVTIQDLTEEISEGLGLKDTSGVLVAKVQKDGPG
DKAGIKTGDIIIEFAGIPVKNTKKLRVIIADAPIDQEVKVKILRDKKEFELPIKVTAD
NEEINKDLAERVNKEAVTNKGDNNLSITKNNITFSNLTQELRQKYTIPQDKTGVVITN
INEEENSFKIGDLITNVNQENIEDISKLEQLYENAKKSNKQNILLLIERGDRYMFVPL
QVM"
misc_feature 145554..146921
/gene="ruvC"
/locus_tag="A1E_00630"
/note="periplasmic serine protease, Do/DeqQ family;
Region: degP_htrA_DO; TIGR02037"
/db_xref="CDD:162670"
misc_feature 145758..146174
/gene="ruvC"
/locus_tag="A1E_00630"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature 146289..146558
/gene="ruvC"
/locus_tag="A1E_00630"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(146292..146303,146307..146309,146460..146465,
146472..146477)
/gene="ruvC"
/locus_tag="A1E_00630"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
misc_feature 146667..146921
/gene="ruvC"
/locus_tag="A1E_00630"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(146667..146669,146673..146675,146817..146822,
146829..146834)
/gene="ruvC"
/locus_tag="A1E_00630"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
gene 147028..147777
/locus_tag="A1E_00635"
/db_xref="GeneID:5625813"
CDS 147028..147777
/locus_tag="A1E_00635"
/note="COG1054 Predicted sulfurtransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491860.1"
/db_xref="GI:157803311"
/db_xref="GeneID:5625813"
/translation="MNEKIAILSTYSFVNIEEPANLIPKLLLIAKRKYVRGTILLSKE
GFNGSFSGSYENVNLVLEELIKLTVPKDVNVKINYSDLHPFQKLKVRLKKEIVAMNVD
DLNVDLFKGEYIESKDWDSFITKQDVIVIDTRNDYEVEIGTFKSAINPYTKTFKQFPA
WVHQNEKLLKGKKIAMFCTGGIRCEKSTSLLKSIGYDDVYHLKGGILQYLEDTQNKNN
LWQGECFVFDDRRAVEDDLSPSERHTRLPST"
misc_feature 147028..147768
/locus_tag="A1E_00635"
/note="hypothetical protein; Validated; Region: PRK01415"
/db_xref="CDD:167229"
misc_feature 147358..147660
/locus_tag="A1E_00635"
/note="Member of the Rhodanese Homology Domain
superfamily. This CD includes Escherichia coli YceA,
Bacillus subtilis YbfQ, and similar uncharacterized
proteins; Region: RHOD_YceA; cd01518"
/db_xref="CDD:29081"
misc_feature 147559..147561
/locus_tag="A1E_00635"
/note="active site residue [active]"
/db_xref="CDD:29081"
gene 147799..148173
/locus_tag="A1E_00640"
/db_xref="GeneID:5626197"
CDS 147799..148173
/locus_tag="A1E_00640"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase cytochrome b-556
subunit"
/protein_id="YP_001491861.1"
/db_xref="GI:157803312"
/db_xref="GeneID:5626197"
/translation="MTKTKQEIYNKRPISPHLSIYKMQISSTLSILHRITGVALFFAV
SILAWWLILSKYDNNYLYLASCYIIKICLVAVSYAWFYHLCNGIRYLFWAIGYCFSIK
AVNITGWCVVICSTLLTILLWV"
misc_feature 147832..148170
/locus_tag="A1E_00640"
/note="Succinate:quinone oxidoreductase (SQR) Type C
subfamily, Succinate dehydrogenase C (SdhC) subunit;
composed of bacterial SdhC and eukaryotic large cytochrome
b binding (CybL) proteins. SQR catalyzes the oxidation of
succinate to fumarate coupled to the...; Region:
SQR_TypeC_SdhC; cd03499"
/db_xref="CDD:48060"
misc_feature order(147832..147843,147856..147864,147868..147870,
147877..147879,147898..147900,148066..148068,
148075..148077,148081..148083)
/locus_tag="A1E_00640"
/note="Iron-sulfur protein interface; other site"
/db_xref="CDD:48060"
misc_feature order(147865..147867,147886..147891,147898..147900)
/locus_tag="A1E_00640"
/note="proximal quinone binding site [chemical binding];
other site"
/db_xref="CDD:48060"
misc_feature order(147898..147900,147931..147933,147940..147942,
147949..147954,148015..148017,148078..148080,
148162..148164)
/locus_tag="A1E_00640"
/note="SdhD (CybS) interface [polypeptide binding]; other
site"
/db_xref="CDD:48060"
misc_feature order(147898..147900,147916..147921,148045..148050)
/locus_tag="A1E_00640"
/note="proximal heme binding site [chemical binding];
other site"
/db_xref="CDD:48060"
gene 148506..148625
/locus_tag="A1E_00645"
/db_xref="GeneID:5626198"
CDS 148506..148625
/locus_tag="A1E_00645"
/note="COG2009 Succinate dehydrogenase/fumarate reductase,
cytochrome b subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491862.1"
/db_xref="GI:157803313"
/db_xref="GeneID:5626198"
/translation="MLFLIKQEILLLYDRGEFILSEAKDLPWSEEIAKDCYEK"
gene 149004..149381
/locus_tag="A1E_00650"
/db_xref="GeneID:5626199"
CDS 149004..149381
/locus_tag="A1E_00650"
/note="COG2142 Succinate dehydrogenase, hydrophobic anchor
subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491863.1"
/db_xref="GI:157803314"
/db_xref="GeneID:5626199"
/translation="MVYDFKVEIVKAKASGSAKSGSHHWLLQRVTAIILALCSIWLIY
FTLTNKSSDLSIIMWELKKPFNVVALLITVIISLYHAMIGVQIVIEDYIRCNKLLNTL
IIVVKLFCLVTIAAFVTAMFYKG"
misc_feature 149070..149369
/locus_tag="A1E_00650"
/note="Succinate:quinone oxidoreductase (SQR) Type C
subfamily, Succinate dehydrogenase D (SdhD) subunit-like;
composed of predominantly uncharacterized bacterial
proteins with similarity to the E. coli SdhD subunit. One
characterized protein is the respiratory...; Region:
SQR_TypeC_SdhD_like; cd03495"
/db_xref="CDD:48056"
misc_feature order(149088..149090,149274..149279,149340..149342,
149349..149351)
/locus_tag="A1E_00650"
/note="putative SdhC subunit interface [polypeptide
binding]; other site"
/db_xref="CDD:48056"
misc_feature order(149097..149099,149241..149243,149253..149255)
/locus_tag="A1E_00650"
/note="putative proximal heme binding site [chemical
binding]; other site"
/db_xref="CDD:48056"
misc_feature order(149262..149264,149271..149276,149283..149285)
/locus_tag="A1E_00650"
/note="putative Iron-sulfur protein interface [polypeptide
binding]; other site"
/db_xref="CDD:48056"
misc_feature 149277..149279
/locus_tag="A1E_00650"
/note="putative proximal quinone binding site; other site"
/db_xref="CDD:48056"
gene 149579..151369
/gene="sdhA"
/locus_tag="A1E_00655"
/db_xref="GeneID:5626200"
CDS 149579..151369
/gene="sdhA"
/locus_tag="A1E_00655"
/note="part of four member succinate dehydrogenase enzyme
complex that forms a trimeric complex (trimer of
tetramers); SdhA/B are the catalytic subcomplex and can
exhibit succinate dehydrogenase activity in the absence of
SdhC/D which are the membrane components and form
cytochrome b556; SdhC binds ubiquinone; oxidizes succinate
to fumarate while reducing ubiquinone to ubiquinol"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase flavoprotein subunit"
/protein_id="YP_001491864.1"
/db_xref="GI:157803315"
/db_xref="GeneID:5626200"
/translation="MTKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACVTKLF
PTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAADAVLE
LEHYGVPFSRTEEGKIYQRPFGGMTTEYGKGKAAYRTCAAADRTGHVILHTLYQQSLK
HKVQFFVEYFAIDLLMEDGQCRGVVAWNLDDGSMHCFRAHNVVLATGGYGRAYFSATS
AHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGCLITEGARGEGGYLVNANGERF
MERYAPATKDLASRDVVSRAMTIEIREGRGVGKYKDHVFLHLNHLSPEILYSRLPGIA
ETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGQVIIKEGENHNTIVKGLMAIGEA
ACVSVHGANRLGSNSLLDLVVFGRSSALKAAELIKPASPHKSLKEESLEKVINRFDKV
RHSNGNILVADLRLKMQRTMQSHAAIFRTQEVLDEGAEMISEIRAGYKDIKVNDKSLI
WNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDLDWMKHTLSSIND
VGTVVLDYKPVTLTTLTDEVKAIPPAKRVY"
misc_feature 149579..151366
/gene="sdhA"
/locus_tag="A1E_00655"
/note="succinate dehydrogenase flavoprotein subunit;
Reviewed; Region: sdhA; PRK09078"
/db_xref="CDD:181641"
misc_feature 149672..150955
/gene="sdhA"
/locus_tag="A1E_00655"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 150965..151366
/gene="sdhA"
/locus_tag="A1E_00655"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene complement(151411..151509)
/locus_tag="A1E_00660"
/db_xref="GeneID:5626201"
CDS complement(151411..151509)
/locus_tag="A1E_00660"
/note="COG1053 Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491865.1"
/db_xref="GI:157803316"
/db_xref="GeneID:5626201"
/translation="MTKQGRNKNASLQHFIIFTGLQRSEQMRAIMI"
gene 151578..152234
/gene="sdhA"
/locus_tag="A1E_00665"
/db_xref="GeneID:5626291"
CDS 151578..152234
/gene="sdhA"
/locus_tag="A1E_00665"
/EC_number="1.3.5.1"
/note="COG0765 ABC-type amino acid transport system,
permease component"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase flavoprotein subunit"
/protein_id="YP_001491866.1"
/db_xref="GI:157803317"
/db_xref="GeneID:5626291"
/translation="MFEYLIKFYPKILFIVEGTLVTLKYSVIAVIFGLVIGMLLAICK
VNKNYALRFFANFYTSIFRGTPLLIQLSIIYFASPYIVGIKFSVFTAGAISFSLNSGA
YVSEVIRAGINAVDKGQFEAAEALAIPRYLIMQDIILPQAVKNIFPSLVNELVSLIKE
SAIISMLGEIDLMRRAQIVSIETYNYFFPMLIAACCYYILVMLISFIAKIIEKKMIVN
"
misc_feature 151620..152219
/gene="sdhA"
/locus_tag="A1E_00665"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 151635..152195
/gene="sdhA"
/locus_tag="A1E_00665"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(151680..151685,151692..151697,151710..151712,
151740..151751,151755..151784,151791..151796,
151800..151802,151869..151874,151878..151880,
151884..151886,151893..151898,151902..151904,
151914..151919,151926..151928,151977..151979,
152019..152024,152031..152033,152052..152063,
152070..152075,152112..152117,152145..152150,
152157..152162,152166..152171,152178..152183,
152190..152195)
/gene="sdhA"
/locus_tag="A1E_00665"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(151758..151802,152052..152069)
/gene="sdhA"
/locus_tag="A1E_00665"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(151800..151802,151854..151856,152070..152072,
152106..152108,152115..152117,152145..152147)
/gene="sdhA"
/locus_tag="A1E_00665"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(151929..151967,151983..151988,151998..152000)
/gene="sdhA"
/locus_tag="A1E_00665"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 152392..152781
/gene="rpsL"
/locus_tag="A1E_00670"
/db_xref="GeneID:5626292"
CDS 152392..152781
/gene="rpsL"
/locus_tag="A1E_00670"
/note="interacts with and stabilizes bases of the 16S rRNA
that are involved in tRNA selection in the A site and with
the mRNA backbone; located at the interface of the 30S and
50S subunits, it traverses the body of the 30S subunit
contacting proteins on the other side; mutations in the
S12 gene confer streptomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_001491867.1"
/db_xref="GI:157803318"
/db_xref="GeneID:5626292"
/translation="MPTYNQLVRFGRKSKTRKTKSPALESNPFKSGVCLVVKTVTPKK
PNSALRKIATVRLSNKRTVNAYIPGEKHSVKEHDRVLVRGGQVPDLPGVKYHIVLGAY
DIAGVKGRKQGRSRYGAPSKQVAVTKK"
misc_feature 152398..152721
/gene="rpsL"
/locus_tag="A1E_00670"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:48341"
misc_feature order(152401..152406,152410..152415,152422..152427)
/gene="rpsL"
/locus_tag="A1E_00670"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:48341"
misc_feature 152401..152403
/gene="rpsL"
/locus_tag="A1E_00670"
/note="S8 interaction site; other site"
/db_xref="CDD:48341"
misc_feature order(152425..152433,152467..152469,152473..152478,
152482..152484,152527..152532,152536..152544,
152563..152565,152587..152589,152596..152601,
152638..152643,152653..152658,152719..152721)
/gene="rpsL"
/locus_tag="A1E_00670"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(152518..152523,152653..152655)
/gene="rpsL"
/locus_tag="A1E_00670"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:48341"
misc_feature 152521..152526
/gene="rpsL"
/locus_tag="A1E_00670"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(152524..152541,152599..152625)
/gene="rpsL"
/locus_tag="A1E_00670"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:48341"
gene 152809..153291
/locus_tag="A1E_00675"
/db_xref="GeneID:5626293"
CDS 152809..153291
/locus_tag="A1E_00675"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_001491868.1"
/db_xref="GI:157803319"
/db_xref="GeneID:5626293"
/translation="MSRRHAAGKRVILPDMKYNSILLSRFINNLMKEGKKALAEKIVY
SAFNKIEKKHRVDPYQIFNNAMHNVKPHLEVTSVRVGGANYQVPTHVDESRGYALASR
WIINAALKRSEKMMIDKLAEELFEASNNRGVAIKKKEDTHKMAEANKAFSHFSPKKMK
"
misc_feature 152809..153270
/locus_tag="A1E_00675"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:180003"
gene 153304..155376
/locus_tag="A1E_00680"
/db_xref="GeneID:5626294"
CDS 153304..155376
/locus_tag="A1E_00680"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_001491869.1"
/db_xref="GI:157803320"
/db_xref="GeneID:5626294"
/translation="MTKINKLEYIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVH
EGGATMDWMEQEQERGITITSAATTCRWQDKIINIIDTPGHVDFTIEVERSLRVLDGA
VAVFDGVAGVEPQSETVWRQADKYNVPRMCFINKMDRMGADFYRCVEMIKDRLGAKPL
VIQLPVGIEENFKGIIDLVKMKAVIWKDESLGAEYFAEDIPADMKYKAEEYRTKLLDM
VVELDDHIMEKYLSGEEVTEEEIERLIRNGTISAAFYPVLCGSAFKNKGVQPLLDAVV
GFLPSPIDIGIVKGIEVSTGEEKDFPISVTEPFAALAFKIMNDPFVGSLTFIRIYSGK
ITSGSTVINTVKNKREKIGRMLLMHANNREDVKEASAGDIVALAGLKDTTTGDTLSDI
DKQVILERMEFPEPVIELAVEPKSTADQEKMGLALSRLAAEDPSFRVSMDHETGQTVI
KGMGELHLEIIIDRMRREFKVEANIGAPQVAYRETITKICEIDYTHKKQSGGAGQFAR
VKIIFEPLNPGEGFVFESKIVGGAVPKEYIPGIEKGLNNIRETGVIAGYPMIDFKATL
VDGAFHDVDSSVLAFEIAAKAAFREGMLKGNPKLLEPIMKVEVITPDEYMGDIIGDLN
SRRGQIQSMDPRANAQVVTSNVPLAEMFGYVNTLRSLSQGRAQFSMIFSHYDQVPSQI
ADVIKAKK"
misc_feature 153304..155373
/locus_tag="A1E_00680"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:178789"
misc_feature 153337..154149
/locus_tag="A1E_00680"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 153352..153375
/locus_tag="A1E_00680"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(153355..153357,153361..153363,153373..153378,
153385..153387,153394..153399,153499..153504,
153556..153561,153628..153633,153739..153741,
153751..153753)
/locus_tag="A1E_00680"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(153361..153363,153367..153378,153706..153711,
153715..153717,154084..154092)
/locus_tag="A1E_00680"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 153442..153501
/locus_tag="A1E_00680"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 153487..153489
/locus_tag="A1E_00680"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 153544..153555
/locus_tag="A1E_00680"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 153550..153606
/locus_tag="A1E_00680"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 153706..153717
/locus_tag="A1E_00680"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 154084..154092
/locus_tag="A1E_00680"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 154228..154476
/locus_tag="A1E_00680"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature 154747..155094
/locus_tag="A1E_00680"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:58274"
misc_feature 155107..155340
/locus_tag="A1E_00680"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 155537..155612
/locus_tag="A1E_t05690"
/db_xref="GeneID:5626295"
tRNA 155537..155612
/locus_tag="A1E_t05690"
/product="tRNA-Trp"
/db_xref="GeneID:5626295"
gene 155746..156009
/gene="secE"
/locus_tag="A1E_00685"
/db_xref="GeneID:5626381"
CDS 155746..156009
/gene="secE"
/locus_tag="A1E_00685"
/note="forms a complex with SecY and SecG; SecYEG forms a
putative protein-conducting channel to which secA binds
and translocates targeted polypeptides across the
cytoplasmic membrane, a process driven by ATP and a
proton-motive force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_001491870.1"
/db_xref="GI:157803321"
/db_xref="GeneID:5626381"
/translation="MSQLPREVACYDKSNKLPNKNMFKEYKIYKFFEQVKQETYKVVW
PTRKELVASTLVVVVAVFIFSLICLVLDYSIHNIMKLLLNIGK"
misc_feature 155800..155991
/gene="secE"
/locus_tag="A1E_00685"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:181055"
gene 156025..156603
/gene="nusG"
/locus_tag="A1E_00690"
/db_xref="GeneID:5626382"
CDS 156025..156603
/gene="nusG"
/locus_tag="A1E_00690"
/note="Modulates Rho-dependent transcription termination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusG"
/protein_id="YP_001491871.1"
/db_xref="GI:157803322"
/db_xref="GeneID:5626382"
/translation="MTAQSLDNILPSSKKNIKQWYVVHTASGAEKRIKEDMLRKIAKQ
KMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPSYLLIKMNMTDKSWHFVKNIPGVTG
FLGSKTMPKALTEGEIQNIFNNLEAEAKEAKNSKLYEVGEIVTVTDGPFETFMGTVEE
IDQEKNRLKVSVSIFGKATPIELNFSQVKKND"
misc_feature 156061..156600
/gene="nusG"
/locus_tag="A1E_00690"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 156079..156393
/gene="nusG"
/locus_tag="A1E_00690"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(156088..156090,156190..156192,156250..156252,
156259..156261,156265..156267,156361..156363,
156385..156387)
/gene="nusG"
/locus_tag="A1E_00690"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 156439..156516
/gene="nusG"
/locus_tag="A1E_00690"
/note="KOW motif; Region: KOW; cl00354"
/db_xref="CDD:199293"
gene 156835..157272
/gene="rplK"
/locus_tag="A1E_00695"
/db_xref="GeneID:5626383"
CDS 156835..157272
/gene="rplK"
/locus_tag="A1E_00695"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_001491872.1"
/db_xref="GI:157803323"
/db_xref="GeneID:5626383"
/translation="MSQKAIKGYINLIIPAAGATPAPPIGPALGQRKVNIAAFCKDFN
DATQAMEKGIPLPTVITVYEDRSFSFKIKTSPASYFLKKYAKITKGSSATKKEAVVGK
VTMDDCREIAKLKMPDLNTKNIEAATKIICGSAASMGLEVVGN"
misc_feature 156844..157266
/gene="rplK"
/locus_tag="A1E_00695"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature 156925..157260
/gene="rplK"
/locus_tag="A1E_00695"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(156925..156927,157060..157068,157078..157080,
157099..157101,157177..157179,157192..157200,
157210..157212,157219..157224,157231..157236,
157240..157248)
/gene="rplK"
/locus_tag="A1E_00695"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature 156925..156927
/gene="rplK"
/locus_tag="A1E_00695"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(157009..157011,157015..157026,157036..157038,
157042..157047,157180..157185,157192..157197)
/gene="rplK"
/locus_tag="A1E_00695"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(157117..157119,157129..157131)
/gene="rplK"
/locus_tag="A1E_00695"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 157278..157997
/gene="rplA"
/locus_tag="A1E_00700"
/db_xref="GeneID:5626384"
CDS 157278..157997
/gene="rplA"
/locus_tag="A1E_00700"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_001491873.1"
/db_xref="GI:157803324"
/db_xref="GeneID:5626384"
/translation="MSNKKDIAVKNSGGKKIREAREKVKSDTLYNLTNAVERLKSASY
VKFDPTLEIVMKLGIDPRHSDQMIRGVVNLPAGTGKTVRVAVICKAERVEEAKSAGAD
LVGSTSIIDEIKAGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKN
AIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLQNLNEFIEAVIKAKPAGLKGSYL
KAMYLSSTMGASVQIDLTSIA"
misc_feature 157371..157976
/gene="rplA"
/locus_tag="A1E_00700"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:88601"
misc_feature order(157410..157418,157425..157427,157431..157433,
157437..157439,157443..157445,157806..157808,
157812..157814,157818..157820,157956..157961,
157965..157967)
/gene="rplA"
/locus_tag="A1E_00700"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88601"
gene 158282..158791
/gene="rplJ"
/locus_tag="A1E_00705"
/db_xref="GeneID:5626567"
CDS 158282..158791
/gene="rplJ"
/locus_tag="A1E_00705"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_001491874.1"
/db_xref="GI:157803325"
/db_xref="GeneID:5626567"
/translation="MLRSEKSVAVEDIVNIYKESPSVIITHYHGLTVSQVSSLRESLK
SQEAGFKVVKNTLAKIAANQTGLNNIVELFAGPTAIAYSKEPVGMAKLVVNFAKANDN
LKIIGGVVDNHVLDKHSIKELSKLPLLNELRGKIVELLQAPATKVLGVLQAPSSSMAR
VIQAHASKN"
misc_feature 158285..158752
/gene="rplJ"
/locus_tag="A1E_00705"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:88597"
misc_feature order(158297..158302,158309..158311,158441..158452,
158459..158461)
/gene="rplJ"
/locus_tag="A1E_00705"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88597"
misc_feature order(158540..158542,158609..158611,158618..158620,
158666..158668,158675..158680,158687..158692,
158696..158713,158717..158725,158732..158737,
158741..158746,158750..158752)
/gene="rplJ"
/locus_tag="A1E_00705"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:88597"
gene 158823..159200
/gene="rplL"
/locus_tag="A1E_00710"
/db_xref="GeneID:5626568"
CDS 158823..159200
/gene="rplL"
/locus_tag="A1E_00710"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_001491875.1"
/db_xref="GI:157803326"
/db_xref="GeneID:5626568"
/translation="MADLAKIEEQLSSLTLMQAAELVKMLEEKWGVSAAAPVPMAAAS
APAAAEEAVAEKTDFEVVLTAVGGKKVEVIKVVREITGLGLIEAKKLVDEAPKAVKQS
VKKAEAEEIKSKLEAAGAKVELK"
misc_feature 158826..159194
/gene="rplL"
/locus_tag="A1E_00710"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(158826..158828,158865..158873,158880..158885,
158892..158894,158901..158903,158946..158948,
158955..158960,158964..158972,158991..158996,
159057..159059,159063..159068,159072..159074,
159078..159083,159123..159128,159132..159134,
159141..159143)
/gene="rplL"
/locus_tag="A1E_00710"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(158835..158837,158844..158846,158856..158858,
158895..158897,158910..158912)
/gene="rplL"
/locus_tag="A1E_00710"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(158877..158879,158886..158891,158901..158903,
158910..158912)
/gene="rplL"
/locus_tag="A1E_00710"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(159030..159035,159042..159047,159054..159056,
159075..159080,159087..159089)
/gene="rplL"
/locus_tag="A1E_00710"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(159033..159035,159045..159047,159054..159056,
159075..159080,159087..159089)
/gene="rplL"
/locus_tag="A1E_00710"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(159033..159035,159042..159047,159054..159056)
/gene="rplL"
/locus_tag="A1E_00710"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 159903..164024
/gene="rpoB"
/locus_tag="A1E_00715"
/db_xref="GeneID:5626569"
CDS 159903..164024
/gene="rpoB"
/locus_tag="A1E_00715"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_001491876.1"
/db_xref="GI:157803327"
/db_xref="GeneID:5626569"
/translation="MVLLRDNIEVQPLSNNRRIRKNFGHINLVADIPNLIEIQKNSYE
KNFLQLNIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRS
LSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVV
VSQMHRSPGVFFYHDEGKIHSSGKLLYSARVIPYRGSWLDLEFDAKDIIYFRIDRKRK
LYATTLLRAIGMSTEEIIKFYYNSVTYKLVQNKGWAVKFMPGHITAHRLTSDLVDADT
GNVLLKAGQKITPRLAQKYFREGLNNVLVARETLIGKYLSEDLRDPVSDEILAKIGEM
ITADMLNVINDLKIKNVNVLVVNPQSGPYIRNTLFADKNQDRETALCDIFRVLRPGEP
ANIEAAEGLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEVTVLTIDDIKNIVRVLV
ELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSAGDVDTLMPHD
LVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRDRAGFEVRD
VHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDGRVTDEVVYLS
AIEEGKYKIGQANSKVDKDGVLQGEFINCRVEGGNFVMVEPHEVDFIDVTPMQVVSVA
ASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASVLALHDG
IVEQVDSNRIVIRTLAQKADGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYVKKND
IIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDIFTSIHIEEFEVI
ARDTRLGPEEITRDIPNVSEEALSHLDEVGIIYVGAEVKAGDILVGKVTPKSESPITP
EEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQRAIAIEKQQIEK
LAKDRDDELEIVEHFVFSWLEKLLVGQVIINGPKQVKAGQTITTEVLKGLSKGQFWQL
TVEDANIMNEIEQIKTHYDEKKEALNKRFATKVEKLQSGDDLPQGALKVVKVFIATKH
KLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETH
LGWASINLAKKISTLVQEYQNKKIAIEQIKKFLIKLYGENINSVLERSEEEIISFCKK
VSKGVHFATPVFDGAKVQDVKDMLKLADQDPSGQVKLIDGRTGEYFDRLVTVGQKYLL
KLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS"
misc_feature 160005..>160610
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature <161019..161315
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:203048"
misc_feature <161217..>162089
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature 162099..>162776
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:201307"
misc_feature <163104..164009
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(163155..163157,163161..163163,163236..163244,
163251..163253,163257..163262,163632..163655,
163659..163661)
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(163209..163211,163215..163217,163221..163223,
163287..163289,163293..163295,163302..163304,
163311..163313,163326..163328,163338..163340,
163548..163550,163629..163631,163653..163661,
163665..163667,163704..163706,163713..163721,
163725..163730,163791..163799,163809..163811,
163815..163820,163824..163826,163830..163847,
163851..163868,163878..163880,163947..163949,
163959..163961,163965..163967,163971..163976,
163980..163982,163986..163997,164001..164003,
164007..164009)
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(163233..163235,163635..163637)
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(163236..163238,163275..163277,163515..163520,
163524..163526,163617..163619,163668..163670)
/gene="rpoB"
/locus_tag="A1E_00715"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 164217..168353
/locus_tag="A1E_00720"
/db_xref="GeneID:5626570"
CDS 164217..168353
/locus_tag="A1E_00720"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_001491877.1"
/db_xref="GI:157803328"
/db_xref="GeneID:5626570"
/translation="MSLVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETIN
YRTFKPEKDGLFCARIFGPVKDYECLCGKYKRMKNRGIICEKCGVEVTVSRVRRERMG
HIELAAPIAHIWFLKSLPSRISTLLDMTMRDLEKILYFENYVVLDPGLSILQKGELLT
EEELQKAKDKYGEDAFTASIGAEVIQQMLKDLDFAKLKQELYEELQNTTSEVKKKKLV
KRLKLVEDFLESENKPEWMIIDVLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRN
NRLKKLIESKAPDIIVRNEKRMLQEAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGK
QGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYSKLELYGIAT
TIKAAKRMVEAEKPEVWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPLLIEGKAIQLH
PLVCAAFNADFDGDQMAVHIPLSIEAQLEARVFMMSTNNILSPANGRPIIVPDKDIVL
GLYYLTIAFDNEVGEGLMFSDLAEMEHALYNKFITIHTKIKYRRNQLNAEGKMVPVIV
DTTYGRLMVGELLPSNPNIEFKFINKQLTKKDISLVIDLVYRHCGQKATVIFADQLMK
LGFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLITYGEKYNKVVD
AWSRCTDRVANDMMKEIATPPINDEPNHQKINAIYMMAVSGARGSFQQIKQLGGMRGL
MTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDTALKTASSGYLTRKLVDVA
QDCIITEKDCGTDKGIEVKSVIEGGEVIVSLAEKILGRTAAIDIFHPVTNDLILNKGE
LINEVKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATGTLVSEGEAIGVIAA
QSIGEPGTQLTMRTFHIGGAATKGAEISSVEASYDAKVKIISRNVVINSEERKIVMSR
NCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIPIITEKSGKVL
FKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEVITLSNGLE
ARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHA
VIAEVDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLID
GNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITDSG
GTTLLVGEKVDRHEFDEINEKAIKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENSINADKG
"
misc_feature 164262..165242
/locus_tag="A1E_00720"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 164271..166757
/locus_tag="A1E_00720"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:30435"
misc_feature 164919..165749
/locus_tag="A1E_00720"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 165681..166142
/locus_tag="A1E_00720"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 166227..166490
/locus_tag="A1E_00720"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 166920..>167024
/locus_tag="A1E_00720"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 166935..166937
/locus_tag="A1E_00720"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature <167631..167825
/locus_tag="A1E_00720"
/note="PTS_IIA, PTS system, glucose/sucrose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_glc; cl00162"
/db_xref="CDD:185805"
misc_feature <167832..168281
/locus_tag="A1E_00720"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(168123..168125,168168..168173)
/locus_tag="A1E_00720"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(168213..168215,168231..168233,168249..168251,
168258..168263,168273..168275)
/locus_tag="A1E_00720"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(168570..169487)
/locus_tag="A1E_00725"
/db_xref="GeneID:5626571"
CDS complement(168570..169487)
/locus_tag="A1E_00725"
/EC_number="2.7.7.6"
/note="COG0086 DNA-directed RNA polymerase, beta'
subunit/160 kD subunit"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_001491878.1"
/db_xref="GI:157803329"
/db_xref="GeneID:5626571"
/translation="MDEIYSLTPHPIRYACLNYLKLLSLPISLAFYLIKFCFTANPVW
TWIGVNILYKKMDQSIATKILHGLPDGIETEQDILKTVEYVFKKYEENPTLAPLIEPT
FIQKFLAKAGKYIPAFSKIIKFWNEGGINYSYEIQTKRELINVIYKQIVSKAYEVGKK
GEKLEITDVQAIFPKINFKEKIKAESEDLQIDKVEVSNRPLSNNQKYEEVNTNNPLMN
LIMLKALYDRVGQEIQKVYIENYLAEYQIRIRHHYTMLKNAYIDDDLTKLQLYANYNY
DNNNTYIPEQPISYLGQNYEHLTTSISCY"
gene 169864..171366
/locus_tag="A1E_00730"
/db_xref="GeneID:5626691"
CDS 169864..171366
/locus_tag="A1E_00730"
/note="catalyzes the removal of N-terminal amino acids
preferably leucine from various peptides"
/codon_start=1
/transl_table=11
/product="leucyl aminopeptidase"
/protein_id="YP_001491879.1"
/db_xref="GI:157803330"
/db_xref="GeneID:5626691"
/translation="MLNVNFTNGELLNTQGLVVFIDEQLKLDSNLITLDQQHHGLISK
TIADKLQFTGKYGQIKVIPSVIKSGEIKYLIIAGLGTEEKLTEAKVEELGGKILQYAT
SAKISTISLKIINRISRFTSQTFASLVASGAFLASYRFDKYRTNLKEAEKFAVESIEV
FTDNNTEAAKLFEVKKLVAEAVFFTRDISNEPSNIKTPQVYAERIVDILEPLGVDVDI
IGEREMKNLGMGALLGVGQGSQNESKLVVMEYKGGSKYPTIALVGKGVIFDTGGISLK
PSSNMHLMRYDMGGSAAVVGSMIAVAGQKLPVNIVGVVGLVENMLSGNAQRPGDVVTT
MSGQTVEVLNTDAEGRLVLADAVWYAQEKFKPKCLIDVATLTGAITVALGSTYAGCFS
NNDELASKLIKAGEEVNEKLWRMPLHDEYDAMIGSDIADMANISNIPRAAGSCIAAHF
IKRFIKDGVDWAHLDIAGVANSNKVSSLGPKGAVGYGVRLLEKFIKEYNR"
misc_feature 169864..171357
/locus_tag="A1E_00730"
/note="multifunctional aminopeptidase A; Provisional;
Region: PRK00913"
/db_xref="CDD:179165"
misc_feature 169903..171348
/locus_tag="A1E_00730"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:48344"
misc_feature order(170005..170010,170050..170052,170080..170082,
170125..170127,170431..170433,170437..170445,
170575..170577,170581..170583,170665..170667,
170683..170685,170698..170700,170707..170709,
170716..170721,170815..170817,170821..170832,
170836..170838,170842..170856,170872..170874,
170878..170880,170890..170892,171001..171015,
171022..171024,171100..171105,171109..171111,
171124..171126,171130..171135,171148..171150,
171154..171156,171187..171192,171196..171198,
171304..171306)
/locus_tag="A1E_00730"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:48344"
misc_feature order(170653..170655,170668..170670,170689..170691,
170722..170724,170899..170901,170905..170907,
170911..170913,170986..170988)
/locus_tag="A1E_00730"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:48344"
misc_feature order(170653..170655,170668..170670,170722..170724,
170899..170901,170905..170907)
/locus_tag="A1E_00730"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:48344"
gene 171560..172354
/locus_tag="A1E_00735"
/db_xref="GeneID:5626692"
CDS 171560..172354
/locus_tag="A1E_00735"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491880.1"
/db_xref="GI:157803331"
/db_xref="GeneID:5626692"
/translation="MNSKPYIFVIGNEKGGAGKTTCSMHLIIALLYQNYSVVSIDTDS
RQSSLTNYLKNRDLYNKQNPDKTVLVPKHFYISESEVGEQTKSFEQVLKNNQDTDYIV
IDTPGSHTPLSRLAHSYADMIITPINDSFLDLDVIAKIDSKDEIISPSIYSQMIWEQK
MERASRDRVSIDWIILRNRLSNLDALNKRRVGNVLAKLAKRINFKLAEGFSERVIYRE
LFLQGLTLLDLKTAKYDRAFNSSHVLARQELRNFLDFLGIKTMFKG"
misc_feature 171575..172333
/locus_tag="A1E_00735"
/note="ATPase MipZ; Region: MipZ; pfam09140"
/db_xref="CDD:204149"
misc_feature 171578..171997
/locus_tag="A1E_00735"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 171599..171619
/locus_tag="A1E_00735"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature order(171617..171619,171869..171871)
/locus_tag="A1E_00735"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 172435..172866
/locus_tag="A1E_00740"
/db_xref="GeneID:5626693"
CDS 172435..172866
/locus_tag="A1E_00740"
/EC_number="3.4.11.1"
/note="COG1192 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="leucyl aminopeptidase"
/protein_id="YP_001491881.1"
/db_xref="GI:157803332"
/db_xref="GeneID:5626693"
/translation="MQNISENISPEQRKQVDELINKYKHLTLAEQKEVDRKLELHFRE
KDLERNELQLRMNKIFGNLSRENQEKLQVNNNPINKIKEELLPLIKGIINLVENVAEI
IKNPKKVIYEWIKGELNQVKPQQQNHIQSLPKQKNVPTLSR"
gene 172942..174750
/gene="aspS"
/locus_tag="A1E_00745"
/db_xref="GeneID:5626694"
CDS 172942..174750
/gene="aspS"
/locus_tag="A1E_00745"
/note="catalyzes a two-step reaction, first charging an
aspartate molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; contains discriminating
and non-discriminating subtypes"
/codon_start=1
/transl_table=11
/product="aspartyl-tRNA synthetase"
/protein_id="YP_001491882.1"
/db_xref="GI:157803333"
/db_xref="GeneID:5626694"
/translation="MHKYRTHNCNALQISDVGKEVKLSGWVHRRRDHGNLVFIDLRDH
YGITQIVFTDQNLQLMEMASRLRYESVITVIGKVVARSGDTINDTLTTGHIEILAREF
IVESAADTLPFVINTEKDAPEDLRLKHRFLDLRREKLHNNIILRSQIISHIRHLMTAR
GFTEFQTPILTASSPEGARDFLVPSRMHSGKFYALPQAPQQFKQLLMVSGFDRYFQIA
PCFRDEDARADRSPGEFYQLDVEMSFVTQEDVFSTIEPVMYDLFTKFTDKKVSETPFI
RIPYNESMLKYGSDKPDLRNPIIIADVTEIFRDSDFTIFRENIKKGSVVRAIPAPKAA
AHARSFFDKMIEFAISEGAGGLGYIQFSKNDKAKGPVAKFLSPQQLESLKATVNISDG
DAVFFVSDKKEKAAKLAGKVRIRISDELDLLEKDCFKFCWITDFPFYELNEETAKIDF
SHNPFSMPQGGLDALKNAKTTAELLELTAYQYDIVCNGIELSSGAIRNHKPEIMYKAF
SIAGYSEEEVNKRFGSMIRAFKFGAPPHGGIAPGIDRIVMLLAEATNIREIIAFPLNQ
QAEDLLMNAPNYVEDKALKELGIMLLPSARKNVEQE"
misc_feature 172945..174720
/gene="aspS"
/locus_tag="A1E_00745"
/note="aspartyl-tRNA synthetase; Validated; Region: aspS;
PRK00476"
/db_xref="CDD:179042"
misc_feature 172954..173358
/gene="aspS"
/locus_tag="A1E_00745"
/note="EcAspRS_like_N: N-terminal, anticodon recognition
domain of the type found in Escherichia coli aspartyl-tRNA
synthetase (AspRS), the human mitochondrial (mt) AspRS-2,
the discriminating (D) Thermus thermophilus AspRS-1, and
the nondiscriminating (ND)...; Region: EcAspRS_like_N;
cd04317"
/db_xref="CDD:58587"
misc_feature order(172954..172956,172963..172965,173017..173019,
173071..173073,173257..173259,173263..173268)
/gene="aspS"
/locus_tag="A1E_00745"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58587"
misc_feature order(173026..173028,173032..173040,173053..173055,
173086..173088,173140..173142,173182..173184,
173200..173202,173227..173229,173275..173277)
/gene="aspS"
/locus_tag="A1E_00745"
/note="anticodon binding site; other site"
/db_xref="CDD:58587"
misc_feature 173368..>173805
/gene="aspS"
/locus_tag="A1E_00745"
/note="Asp tRNA synthetase (aspRS) class II core domain.
Class II assignment is based upon its structure and the
presence of three characteristic sequence motifs. AspRS is
a homodimer, which attaches a specific amino acid to the
3' OH group of ribose of the...; Region: AspRS_core;
cd00777"
/db_xref="CDD:73228"
misc_feature order(173377..173385,173392..173394,173401..173406,
173413..173415,173422..173433,173437..173457,
173476..173478,173485..173499,173509..173520,
173563..173568,173575..173580,173596..173598,
173608..173610,173641..173643,173671..173673,
173686..173688)
/gene="aspS"
/locus_tag="A1E_00745"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73228"
misc_feature 173443..173457
/gene="aspS"
/locus_tag="A1E_00745"
/note="motif 1; other site"
/db_xref="CDD:73228"
misc_feature order(173467..173475,173533..173535,173539..173541,
173548..173550,173605..173607,173611..173613,
173626..173634,173644..173646,173650..173652)
/gene="aspS"
/locus_tag="A1E_00745"
/note="active site"
/db_xref="CDD:73228"
misc_feature 173602..173613
/gene="aspS"
/locus_tag="A1E_00745"
/note="motif 2; other site"
/db_xref="CDD:73228"
misc_feature 173884..174165
/gene="aspS"
/locus_tag="A1E_00745"
/note="GAD domain; Region: GAD; pfam02938"
/db_xref="CDD:145868"
misc_feature <174202..174642
/gene="aspS"
/locus_tag="A1E_00745"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature order(174409..174414,174424..174426,174553..174558,
174562..174567,174574..174576)
/gene="aspS"
/locus_tag="A1E_00745"
/note="active site"
/db_xref="CDD:29813"
misc_feature order(174565..174567,174574..174576)
/gene="aspS"
/locus_tag="A1E_00745"
/note="motif 3; other site"
/db_xref="CDD:29813"
gene complement(175182..175892)
/gene="aspS"
/locus_tag="A1E_00750"
/db_xref="GeneID:5626695"
CDS complement(175182..175892)
/gene="aspS"
/locus_tag="A1E_00750"
/EC_number="6.1.1.12"
/note="COG0670 Integral membrane protein, interacts with
FtsH"
/codon_start=1
/transl_table=11
/product="aspartyl-tRNA synthetase"
/protein_id="YP_001491883.1"
/db_xref="GI:157803334"
/db_xref="GeneID:5626695"
/translation="MIDYTKTLTATAKNKTFDEGLRKYMLKVYNYMALALLLTGVAAL
TTISVEPIYNLMFQTSFGTIIMFAPLGIALYFFMGFGRMNLQTAQILFWVYTTLTGMS
LAYLALIYTGTSIARTFFICSSVFGAMSLYGYSTSRDLTSMGSFFAMGLIGLIIASLV
NLFLKSSALSFATSLIGIVVFMGLIAWDTQKIKSMYYMAGNNEVGQKLSIMAAFTLYL
DFINLFLHLVRFLGNRRD"
misc_feature complement(175197..175835)
/gene="aspS"
/locus_tag="A1E_00750"
/note="Bacterial BAX inhibitor (BI)-1/YccA-like proteins;
Region: BI-1-like_bacterial; cd10432"
/db_xref="CDD:198414"
gene complement(175958..176680)
/locus_tag="A1E_00755"
/db_xref="GeneID:5625826"
CDS complement(175958..176680)
/locus_tag="A1E_00755"
/note="catalyzes the reduction of 2,3-dihydrodipicolinate
to 2,3,4,5-tetrahydrodipicolinate in lysine and
diaminopimelate biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_001491884.1"
/db_xref="GI:157803335"
/db_xref="GeneID:5625826"
/translation="MINIGLSGSTGKMGRAIAERIDEFENCKISAKFSSTNSLYDLDN
FCKHSDVFIDFSTPEILETLVNYALKHNTKLVIGTTGLQPKHFKLLEKAAQTLPILYS
ANMSIGANLLSYLAKEAIKILDDYDVEILDIHHRNKKDSPSGTAIMLAETIANGKDLD
IIFNRGNRPRKKEEIGISSLRGGNVHSIHEISFLDDNEIITLKHEALNNNSFANGAIK
AAIWLQDKPSALYSMQDIYKIY"
misc_feature complement(175964..176680)
/locus_tag="A1E_00755"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:178822"
misc_feature complement(176366..176677)
/locus_tag="A1E_00755"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:144632"
misc_feature complement(175973..176359)
/locus_tag="A1E_00755"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:191215"
gene complement(176688..177170)
/locus_tag="A1E_00760"
/db_xref="GeneID:5625827"
CDS complement(176688..177170)
/locus_tag="A1E_00760"
/note="COG1853 Conserved protein/domain typically
associated with flavoprotein oxygenases, DIM6/NTAB family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491885.1"
/db_xref="GI:157803336"
/db_xref="GeneID:5625827"
/translation="MAGTVTESQFKDAMSRFPQGVTIITTNYNNELFGFTASSFTSVS
LRPSLILFCLNKNSYSINSFQKSNNFAVSILAENQIDISKHFAKSQLNKFTKIDYTLG
NKTDCPLINGATCHIECNKYAAYDAGDHTIFIGKVINTTIKNNLKPLLYFHKSYTNLQ
"
misc_feature complement(176703..177131)
/locus_tag="A1E_00760"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:197971"
gene complement(177155..177880)
/locus_tag="A1E_00765"
/db_xref="GeneID:5625828"
CDS complement(177155..177880)
/locus_tag="A1E_00765"
/EC_number="1.3.1.26"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_001491886.1"
/db_xref="GI:157803337"
/db_xref="GeneID:5625828"
/translation="MKFLKIFLLSFLLVSCEKKETEKTLIVGTAADNPPYEFIQGGKI
VGIDIDIIKAIGERLNKKVIIKNFDFNGLLAALVSENIDVAVAELSVTPERAEYISFS
DNYATARFAIIYRTGDNIQSSKELENKIVGVQLGSVLEKKAQDLSQTMNIKVHSLANH
LMLVEELKARVIDAIISEEFQGIKLKENNPNLESCTLEEFSSDFAIGMSKNSGLINEI
NEAIYSLKKDGTINKIMKKWLGQ"
misc_feature complement(177158..177808)
/locus_tag="A1E_00765"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature complement(177164..177808)
/locus_tag="A1E_00765"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(order(177347..177349,177467..177469,
177596..177598,177671..177673,177782..177784))
/locus_tag="A1E_00765"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature complement(order(177368..177370,177386..177388,
177398..177400))
/locus_tag="A1E_00765"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature complement(177260..177277)
/locus_tag="A1E_00765"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(177877..177960)
/locus_tag="A1E_00770"
/db_xref="GeneID:5625829"
CDS complement(177877..177960)
/locus_tag="A1E_00770"
/note="COG0834 ABC-type amino acid transport/signal
transduction systems, periplasmic component/domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491887.1"
/db_xref="GI:157803338"
/db_xref="GeneID:5625829"
/translation="MFSIPNVIPQFDHGMTQDMLKLKTLFL"
gene complement(177960..179411)
/gene="gatB"
/locus_tag="A1E_00775"
/db_xref="GeneID:5625830"
CDS complement(177960..179411)
/gene="gatB"
/locus_tag="A1E_00775"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
B"
/protein_id="YP_001491888.1"
/db_xref="GI:157803339"
/db_xref="GeneID:5625830"
/translation="MTYIKGNTGKWEYVIGLEIHAQISSKSKLFSGSSTTFAAMPNSQ
VSYVDAAMPGMLPVLNKHCVHQAIKTGLALKAQINKYSVFDRKNYFYADLPQGYQISQ
FYYPIVQNGTMKILTSTGDLKTIRINRLHLEQDAGKSIHDQSPHYSFIDLNRAGIGLM
EIVTEPDISSPEEAAEFVKKLRSLLRYIGSCDGDMEKGSMRCDANISVRRSGEPLGIR
CEIKNINSIRNIIKAIEFEAKRQVDLIESGGIVIQETRLFNADSGETRTIRLKEEAID
YRYFPDPDLLPLIISDELINKLKANLPELPDQKIEKYMKEFGLSKYDAEVIVADESVA
EYFEQAANECNPKMLTNWLTSELFGQLNKASIGISKCKITPSNFAKLIKLIENDTISG
KIAKTVFEIMFETGKAPDKIVEEKGLVQVSDNNVLNTVIDEVITENPKSVEDYRSGKE
KLFSFFVGQIMKKTGGKANPILVNQLLKEKLGS"
misc_feature complement(177969..179393)
/gene="gatB"
/locus_tag="A1E_00775"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit B;
Validated; Region: gatB; PRK05477"
/db_xref="CDD:180111"
misc_feature complement(178518..179378)
/gene="gatB"
/locus_tag="A1E_00775"
/note="GatB/GatE catalytic domain; Region: GatB_N;
pfam02934"
/db_xref="CDD:202476"
misc_feature complement(177969..178406)
/gene="gatB"
/locus_tag="A1E_00775"
/note="GatB domain; Region: GatB_Yqey; smart00845"
/db_xref="CDD:197913"
gene complement(179414..180895)
/gene="gatA"
/locus_tag="A1E_00780"
/db_xref="GeneID:5626492"
CDS complement(179414..180895)
/gene="gatA"
/locus_tag="A1E_00780"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
A"
/protein_id="YP_001491889.1"
/db_xref="GI:157803340"
/db_xref="GeneID:5626492"
/translation="MTELNKLTLADSIKGLKNKDFTSTELVNAHIQQIEKHKNLNAYV
TKTFDLALKGAQIADQNYAQNKARTLEGIPFAAKDLFCTKGIRTTACSNILKNFIPNY
ESSVTQNIFNNGGVMLGKTNMDEFAMGAANITSCFGNVINPWKANNDNSDLVPGGSSG
GSAASVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMVSFASSLDQAG
IFTRSVLDSAIMLEAMMGFDEKDSTSLKAEVPQLQSAIGSSVKNMKIGVPLSLGEGSI
IEPDVMKMWQDTIELLKNAGTEIVDITLPYAKYGVAVYYVIAPAEASSNLSRYDGVRY
GLRVERENMTLDEMYEMTRSAGFGEEVKRRIMIGTYVLSSSCMDAYYLKAQKVRSLVA
NDFNNAFTKVDTILLPAAPSEAFKIGEKQNDPTIMYLNDLFTIPASLAGLPCVSVPAG
LSARGLPLGMQIIGKQLDEYNVLKVASTIESGVKHIKFEPKGF"
misc_feature complement(179426..180895)
/gene="gatA"
/locus_tag="A1E_00780"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:30503"
misc_feature complement(179456..180850)
/gene="gatA"
/locus_tag="A1E_00780"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed; Region: gatA; PRK00012"
/db_xref="CDD:178793"
gene complement(180898..181200)
/gene="gatC"
/locus_tag="A1E_00785"
/db_xref="GeneID:5626493"
CDS complement(180898..181200)
/gene="gatC"
/locus_tag="A1E_00785"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma
proteins contain an N-terminal fusion to an unknown
domain"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
C"
/protein_id="YP_001491890.1"
/db_xref="GI:157803341"
/db_xref="GeneID:5626493"
/translation="MITKEEAQKIAKLARLKFEEDTVEKFSTQLSSIMNMIDILNEID
CKDIEPLTSVSNMNARMREDEVTSSDLSDKLLDHVSGQSAQLAKEVKYFITPKVIE"
misc_feature complement(180901..181200)
/gene="gatC"
/locus_tag="A1E_00785"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit C;
Reviewed; Region: gatC; PRK00034"
/db_xref="CDD:178810"
gene complement(181370..181930)
/gene="frr"
/locus_tag="A1E_00790"
/db_xref="GeneID:5626494"
CDS complement(181370..181930)
/gene="frr"
/locus_tag="A1E_00790"
/note="Rrf; Frr; ribosome-recycling factor; release factor
4; RF4; recycles ribosomes upon translation termination
along with release factor RF-3 and elongation factor EF-G;
A GTPase-dependent process results in release of 50S from
70S; inhibited by release factor RF-1; essential for
viability; structurally similar to tRNAs"
/codon_start=1
/transl_table=11
/product="ribosome recycling factor"
/protein_id="YP_001491891.1"
/db_xref="GI:157803342"
/db_xref="GeneID:5626494"
/translation="MDTETLKKNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVIVE
AYGSKIPLSQVASISTPDARTINVQVWDKSMVSLVEKGITIANLGLTPATDGQLIRLP
IPILTEERRKELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKNNILTKDEHHSLSEQ
VQKLTNDYSNKVDSAIKQKEQEIMTV"
misc_feature complement(181373..181927)
/gene="frr"
/locus_tag="A1E_00790"
/note="ribosome recycling factor; Reviewed; Region: frr;
PRK00083"
/db_xref="CDD:178850"
misc_feature complement(181379..181915)
/gene="frr"
/locus_tag="A1E_00790"
/note="Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are 'recycled'
and ready for another round of...; Region: RRF; cd00520"
/db_xref="CDD:29621"
misc_feature complement(order(181613..181624,181832..181843))
/gene="frr"
/locus_tag="A1E_00790"
/note="hinge region; other site"
/db_xref="CDD:29621"
gene complement(181934..182662)
/gene="pyrH"
/locus_tag="A1E_00795"
/db_xref="GeneID:5626495"
CDS complement(181934..182662)
/gene="pyrH"
/locus_tag="A1E_00795"
/note="Catalyzes the phosphorylation of UMP to UDP"
/codon_start=1
/transl_table=11
/product="uridylate kinase"
/protein_id="YP_001491892.1"
/db_xref="GI:157803343"
/db_xref="GeneID:5626495"
/translation="MTSDINALKYKKVLLKVSGEALMGDKQFGHEYDVIKKIAGDIKE
VIDLGVEVTIVVGGGNIYRGINAALVGMDRASADYIGMLATVINALTLQNVMESLNIY
TRVLSAIPMMSVCEPYIRRKAKRHMEKKRVVIFAGGTGNPFCTTDSAAVLRAIEMNCD
ILLKATQVDGVYDSDPKKNPNAKKYFTISYKDVITNNLQVMDMAAIAVAQENKLPIRI
FSIKDQGNFAKVIQDKGKYTTIEE"
misc_feature complement(181940..182632)
/gene="pyrH"
/locus_tag="A1E_00795"
/note="UMP kinase (UMPK)-Ec, the microbial/chloroplast
uridine monophosphate kinase (uridylate kinase) enzyme
that catalyzes UMP phosphorylation and plays a key role in
pyrimidine nucleotide biosynthesis; regulation of this
process is via feed-back control and...; Region:
AAK_UMPK-PyrH-Ec; cd04254"
/db_xref="CDD:58620"
misc_feature complement(order(182138..182143,182147..182149,
182153..182155,182162..182167,182222..182227,
182486..182494,182603..182608,182615..182617))
/gene="pyrH"
/locus_tag="A1E_00795"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(182225..182233,182237..182242,
182246..182248,182417..182422,182429..182431,
182471..182476,182486..182494))
/gene="pyrH"
/locus_tag="A1E_00795"
/note="uridine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(182027..182029,182195..182200,
182207..182209,182234..182242,182246..182248,
182270..182272,182288..182290,182297..182299,
182309..182311,182351..182353,182381..182383,
182402..182404,182423..182428,182450..182455))
/gene="pyrH"
/locus_tag="A1E_00795"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58620"
gene complement(182659..182991)
/locus_tag="A1E_00800"
/db_xref="GeneID:5626496"
CDS complement(182659..182991)
/locus_tag="A1E_00800"
/note="subunit E of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
E"
/protein_id="YP_001491893.1"
/db_xref="GI:157803344"
/db_xref="GeneID:5626496"
/translation="MLMSTKIKFILYFPWLLLEIWKSAFSVIKIIWQRKIKIEPVFEW
IDAEGLEVIGEIVYAHSITLTPGTVTLDINNNMLLVHALNKSSITTLQRGIMIKKIKQ
LKATSNRK"
misc_feature complement(182683..182991)
/locus_tag="A1E_00800"
/note="putative monovalent cation/H+ antiporter subunit E;
Reviewed; Region: PRK06580"
/db_xref="CDD:180628"
gene complement(182975..184537)
/locus_tag="A1E_00805"
/db_xref="GeneID:5626766"
CDS complement(182975..184537)
/locus_tag="A1E_00805"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein B"
/protein_id="YP_001491894.1"
/db_xref="GI:157803345"
/db_xref="GeneID:5626766"
/translation="MSNNNLQVTSNLSKRQLFAFYGMVVGMFMSVLDIQIVASSLSVI
AAGLAASSNELSWVQTSYLIAEVIIIPTSGFLARLLSTRIAYFIATLGFTVMSVLCSL
ATNIESMVIFRALQGFFGGAMIPTVFSTVFTIFPASQRPTVTILIGLVVTVAPTLGPT
LGGYITEILSWHFMFLLNVIPGIFVCSVVFLYGDFDKPNYKLLKNFDFLGILLMALTL
GLLQYVLEEGNKKGWLEDNLILFLSIAVALGFILLIIRELTFINPILDLKTFLYKDFT
FGCLYSFVMGIGLYGAVYILPLFLFTIAGYDTLQIGATMMVTGGAQFLSAQLAGRMLG
LGVDLRLMLIIGLGGFALGCHLNSFLTPDSKFAAFVLPQFVRGISLMFCFIPTNNIAL
GNMPKERIGNASGLYNLTRNLGGAVGLAIISTILTNDTKTFMQYFSENISSTSIMALE
QLDSYTELLSRKVLNPEKASYLLLANKLNNDAFVIAINNIFNMIGLVFVFIMLLIPFT
SNIKLTKNVNVH"
misc_feature complement(183014..184489)
/locus_tag="A1E_00805"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
misc_feature complement(<183962..184480)
/locus_tag="A1E_00805"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(184073..184075,184091..184096,
184103..184108,184142..184144,184151..184156,
184163..184168,184175..184180,184316..184321,
184325..184330,184340..184342,184349..184354,
184361..184363,184412..184417,184421..184429,
184436..184438))
/locus_tag="A1E_00805"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(183227..>183730)
/locus_tag="A1E_00805"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 184863..185066
/locus_tag="A1E_00810"
/db_xref="GeneID:5626767"
CDS 184863..185066
/locus_tag="A1E_00810"
/note="COG1104 Cysteine sulfinate desulfinase/cysteine
desulfurase and related enzymes"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491895.1"
/db_xref="GI:157803346"
/db_xref="GeneID:5626767"
/translation="MQNPAQKVISFSEHKSDIERIKKSIEEGWAIVKLVPNKNRFIGL
LEKISHAEDETIYIPPRKKIIVN"
misc_feature 184863..185063
/locus_tag="A1E_00810"
/note="Protein of unknown function (DUF2674); Region:
DUF2674; pfam10879"
/db_xref="CDD:151328"
gene complement(185675..185750)
/locus_tag="A1E_t05692"
/db_xref="GeneID:5626768"
tRNA complement(185675..185750)
/locus_tag="A1E_t05692"
/product="tRNA-Thr"
/db_xref="GeneID:5626768"
gene complement(185970..188276)
/locus_tag="A1E_00815"
/db_xref="GeneID:5626769"
CDS complement(185970..188276)
/locus_tag="A1E_00815"
/note="COG4775 Outer membrane protein/protective antigen
OMA87"
/codon_start=1
/transl_table=11
/product="Outer membrane protein omp1"
/protein_id="YP_001491896.1"
/db_xref="GI:157803347"
/db_xref="GeneID:5626769"
/translation="MKSRSISKLTILLLTIFYYQISLADTVIRKITITGDHRVERSTI
ESYLKLKVGETYNNSKEDEAIKRLYATSLFKKINMYITNKGHLIVNVTETPFISSVVF
SGNSKIKTNMLAKEIYTMSGESLSQSKLELDVKKILEIYKRSGRFATTVTAKIENLEN
NRVKVIFDIAEGPKTVIKYIYFNGNDNYSDSELKSIVLTKESRWFRFLESNDTYDPDR
VEYDKELLREFYQSVGFADFRVISALAELNNTKEYFTLTYSIEEGEKYSFGNVTIDNK
LTNIDITPLNKIVNIKQGQVFNMQIVNDIAKKIGEYFTASGYPAVNVYPDIMKNVNHT
TDIKFIIEKADKVYINKINIINNLKTEDHVIRREFKIEEGDIINRSYIEKGERNLRNL
DYFEKVTISLAPTKAKDKYDVNVEVDEKSTSSIGFDLGYNTAGGLFGRFSFLERNLVG
TGKLLNTGVQVSKNSTSYYGTIIEPHFLDRDLSLSVNAFRNYAGYGGSVLNTTDQNYK
LHSIGLKTSLGYEIKEGLGHEIDYLIKRDILSAPTLSTSMFLKEQMGRFITSAIGHTI
TYNQTDNNIVPKNGYLISGTQEFAGVGGDNKYIKHEVDGKYYKSFIHNKLTLKLSASG
GDIAGLGGKIVRISDRFNLGDYSLRGFASGGVGPREKNTNEGLGGERYYTLSTELNFP
TPVPEEFNLTGAVFIDLGSVWGVGLNKKRYETLNGFYNDKSLRASVGFGFIWVTRFAP
IRMDWGFPVKKKKYDDTQHFHLRFSTHL"
misc_feature complement(185976..188198)
/locus_tag="A1E_00815"
/note="outer membrane protein assembly complex, YaeT
protein; Region: OM_YaeT; TIGR03303"
/db_xref="CDD:200260"
misc_feature complement(187998..188198)
/locus_tag="A1E_00815"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(187761..187994)
/locus_tag="A1E_00815"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(187488..187751)
/locus_tag="A1E_00815"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(187251..187481)
/locus_tag="A1E_00815"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(187017..187202)
/locus_tag="A1E_00815"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(185973..186938)
/locus_tag="A1E_00815"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:144626"
gene complement(188580..189656)
/locus_tag="A1E_00820"
/db_xref="GeneID:5626900"
CDS complement(188580..189656)
/locus_tag="A1E_00820"
/note="COG0750 Predicted membrane-associated Zn-dependent
proteases 1"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
E"
/protein_id="YP_001491897.1"
/db_xref="GI:157803348"
/db_xref="GeneID:5626900"
/translation="MLSIVGFIITISFLVFIHEFGHYAVARYVNVKVEEFSIGFGKEL
IGISDKKGVRWKIGLVPLGGYVKIYGYDRTLIANAKEVNEKVAFYTKSCLERFLIVAA
GPLINYLLAIIIFAGLYCYFGKTEIPPIIGDVVASSPAETADLREGDKIIKVNNKPVK
DFGDVQKEILINGFSSSTLTIERNNEEFTVNIMPQEIIITHPEAKNVKKTLRIGIIAK
NAPIHTKIGILIGFWEAINTTIDMSALTLKAISQMIVGKRSLDEIGGPVAIARESGKS
IAQGPQMYLLFIAMLSVNLGLLNLLPIPVLDGGHLIFILYEAITGRLPNPKTKNILLQ
LGAAIIVFLIIISVSNDIQNLFFK"
misc_feature complement(188586..189656)
/locus_tag="A1E_00820"
/note="Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane];
Region: COG0750"
/db_xref="CDD:31093"
misc_feature complement(<189303..189647)
/locus_tag="A1E_00820"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature complement(order(189591..189593,189600..189605))
/locus_tag="A1E_00820"
/note="active site"
/db_xref="CDD:100084"
misc_feature complement(189075..189311)
/locus_tag="A1E_00820"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature complement(order(189147..189152,189159..189164,
189291..189293,189297..189308))
/locus_tag="A1E_00820"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29046"
misc_feature complement(188595..>188804)
/locus_tag="A1E_00820"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:209123"
misc_feature complement(188751..188762)
/locus_tag="A1E_00820"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene 189855..190391
/gene="nusB"
/locus_tag="A1E_00825"
/db_xref="GeneID:5626901"
CDS 189855..190391
/gene="nusB"
/locus_tag="A1E_00825"
/note="Regulates rRNA biosynthesis by transcriptional
antitermination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusB"
/protein_id="YP_001491898.1"
/db_xref="GI:157803349"
/db_xref="GeneID:5626901"
/translation="MRNSSHVTILPRNDVNLKILFSMGSNKINKKSIARIAAVQAMYQ
HILQDNQDMEYILQNVLSFYQNNNSITDLSENLKISLSISHFKMLVKSVFENFNKLDE
MIDNHLTNDKDPAHMPILLRALFRVSICELLFCHTTPAKVVINEYTDIANDMLNEHEI
GFVNSVLDKIAKENKKIL"
misc_feature 189945..190376
/gene="nusB"
/locus_tag="A1E_00825"
/note="Transcription termination factor NusB (N
protein-Utilization Substance B). NusB plays a key role in
the regulation of ribosomal RNA biosynthesis in eubacteria
by modulating the efficiency of transcriptional
antitermination. NusB along with other Nus...; Region:
Terminator_NusB; cd00619"
/db_xref="CDD:29565"
misc_feature order(189945..189947,189957..189959)
/gene="nusB"
/locus_tag="A1E_00825"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:29565"
gene 190388..191071
/locus_tag="A1E_00830"
/db_xref="GeneID:5626902"
CDS 190388..191071
/locus_tag="A1E_00830"
/codon_start=1
/transl_table=11
/product="ribosomal RNA large subunit methyltransferase J"
/protein_id="YP_001491899.1"
/db_xref="GI:157803350"
/db_xref="GeneID:5626902"
/translation="MTNNLSGYRNKFVRVKTSRKRTVSSNNWLRRQLNDPYVAKARTQ
GFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQIASKLIKASDNSLNNKIISI
DLLEIRPIVGVEFFQKDFFEEDTEKLIIQALDGKANIVMSDMASNTIGHKATDHIRTL
LLCEQALEFALKVLKPSGHFIAKIFRGGAENKLLNKVKHEFRTVKHFKPLSSRSESTE
IYLVALNKK"
misc_feature 190457..191068
/locus_tag="A1E_00830"
/note="23S rRNA methylase [Translation, ribosomal
structure and biogenesis]; Region: FtsJ; COG0293"
/db_xref="CDD:30641"
misc_feature 190592..190948
/locus_tag="A1E_00830"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(190604..190624,190694..190699,190739..190747,
190814..190816)
/locus_tag="A1E_00830"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(191118..191339)
/locus_tag="A1E_00835"
/db_xref="GeneID:5626903"
CDS complement(191118..191339)
/locus_tag="A1E_00835"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491900.1"
/db_xref="GI:157803351"
/db_xref="GeneID:5626903"
/translation="MLDNIIFGIARFIRGAADTASNIVEANINIISTTLSTITDNEDI
VNNPTIIEQLDGNWVVVSLGDESSSVTKS"
gene complement(191333..192448)
/locus_tag="A1E_00840"
/db_xref="GeneID:5626904"
CDS complement(191333..192448)
/locus_tag="A1E_00840"
/note="COG0293 23S rRNA methylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491901.1"
/db_xref="GI:157803352"
/db_xref="GeneID:5626904"
/translation="MKEFESLTVEEIPINTINYKEFAHLGVNLAYKTDDAQRYLAEAL
VTDGSHLVGSGWEILAASCNNANTAQYGYKAVAFINKETKTIHIASAGTKADMHDIWD
DARITFHYNPNKLVTVKKFIDEVIDKIGGIEKAAEYIFDTSGHSLGAIVADLTGVELH
SRNLNFNQSVTFDSPGSQEVIKYAIDQDLFTGKVTTPLEELAKHSEVYNAKPNIINTT
NYHSGKINLVLPKVNNIETSESSTTDGWGSYLYNMVGSVVQTASKYLGINKIMEGIDN
HKLKNFANLEDQIILPIADWEQQILENNEYTQQLKTISGQGKDLFLLDTYVADECSSM
VGVNMYHWGYSDLQQSCAMEVKQIGNIDLYNSIEIVC"
gene complement(193122..193562)
/gene="nusB"
/locus_tag="A1E_00845"
/db_xref="GeneID:5626618"
CDS complement(193122..193562)
/gene="nusB"
/locus_tag="A1E_00845"
/note="COG2867 Oligoketide cyclase/lipid transport
protein"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusB"
/protein_id="YP_001491902.1"
/db_xref="GI:157803353"
/db_xref="GeneID:5626618"
/translation="MPSFEQIKVLPYKPQELFDLVWDIKSYPKFLPWCVASRILSEDP
YEIIAELVIQLKGFSEKYNSRVTNAITDNGIYLIDTVAIAGPFEYLTSTWQFVPRTAG
TKLKFFIDLKMQSVILDKLISTYFTKATEKIIVAFEKRAQDIIR"
misc_feature complement(193131..193541)
/gene="nusB"
/locus_tag="A1E_00845"
/note="Coenzyme Q-binding protein COQ10p and similar
proteins; Region: COQ10p_like; cd07813"
/db_xref="CDD:176855"
misc_feature complement(order(193152..193154,193161..193169,
193173..193181,193185..193199,193230..193232,
193236..193238,193242..193244,193248..193250,
193275..193277,193281..193283,193287..193292,
193323..193325,193329..193331,193353..193355,
193365..193367,193371..193373,193404..193406,
193410..193412,193416..193418,193422..193424,
193452..193454,193497..193502,193506..193514,
193539..193541))
/gene="nusB"
/locus_tag="A1E_00845"
/note="putative coenzyme Q binding site [chemical
binding]; other site"
/db_xref="CDD:176855"
gene complement(194099..194923)
/gene="dapD"
/locus_tag="A1E_00850"
/db_xref="GeneID:5626619"
CDS complement(194099..194923)
/gene="dapD"
/locus_tag="A1E_00850"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_001491903.1"
/db_xref="GI:157803354"
/db_xref="GeneID:5626619"
/translation="MYDLIKEIEEAWQIKDMLLQDSAKLITLQKTLNYIIESLNQGTI
RVCEKKENGWQVNEWVKKAILLYFITTESQLYSNNYNSWYDKVAPKFSADIDKNIFKE
ASIRTVPGAFVRTGTYIAKNVVIMPSFINLGAYIDERTMIDTWATIGSCAQIGKNCHI
SGGTGIGGVLEPLQAKPVIIEDNCFIGARSEIAEGVIVEEGAVISMGAFIGSSTKIVY
RDTGEIIYGRVPAYSVVVPGVLPAKEAGKPGLYCVVIIKQVDKTTRARVSINDLLR"
misc_feature complement(194102..194923)
/gene="dapD"
/locus_tag="A1E_00850"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature complement(194201..194611)
/gene="dapD"
/locus_tag="A1E_00850"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature complement(order(194201..194203,194207..194218,
194297..194299,194351..194353,194357..194359,
194435..194437,194483..194491,194537..194539,
194543..194545,194591..194596,194603..194608))
/gene="dapD"
/locus_tag="A1E_00850"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature complement(order(194306..194311,194342..194344,
194357..194365,194402..194404,194411..194416,
194420..194422,194441..194443,194447..194449,
194474..194476,194495..194497,194531..194533,
194546..194548,194582..194584,194606..194608))
/gene="dapD"
/locus_tag="A1E_00850"
/note="active site"
/db_xref="CDD:100041"
misc_feature complement(order(194414..194416,194474..194476,
194495..194497,194531..194533,194546..194548,
194582..194584,194606..194608))
/gene="dapD"
/locus_tag="A1E_00850"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature complement(order(194306..194311,194342..194344,
194357..194365,194402..194404,194420..194422,
194438..194443))
/gene="dapD"
/locus_tag="A1E_00850"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene 195003..195623
/locus_tag="A1E_00855"
/db_xref="GeneID:5626620"
CDS 195003..195623
/locus_tag="A1E_00855"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491904.1"
/db_xref="GI:157803355"
/db_xref="GeneID:5626620"
/translation="MYITCPNCQTKFIVTSNQIGINGRRVKCSKCSHLWYQKLDYNTS
KLNDCKDKVNTETITNHYNANVPVILPCIPPKKKYNIFPILWTHFIIFCLVILLVDSF
KFLGKYDQLKIEQINLGKSLHIGRMRIFYKLSNESDYLISDPIIKVRVMDTNNQALDE
YISITRLQTKIPAKQAIYLEMNLAGIPITAKYINIAIGNRLGLLFK"
misc_feature 195003..195116
/locus_tag="A1E_00855"
/note="MJ0042 family finger-like domain; Region:
MJ0042_CXXC; TIGR02098"
/db_xref="CDD:131153"
gene complement(195946..196302)
/locus_tag="A1E_00860"
/db_xref="GeneID:5626621"
CDS complement(195946..196302)
/locus_tag="A1E_00860"
/note="COG2171 Tetrahydrodipicolinate
N-succinyltransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491905.1"
/db_xref="GI:157803356"
/db_xref="GeneID:5626621"
/translation="MNFHIRELNEELINYKLSLRILFTILSVAIIIVAFDSLGSSSDP
VGDTLCKLIKVFRGNTAKGIAVVGIIVLGIQTLRGKLQWEVALVVVTAIIILFKAPDI
VNMVSSDTNSSNCGVS"
misc_feature complement(195958..196275)
/locus_tag="A1E_00860"
/note="Type IV secretory pathway, VirB2 components
(pilins) [Intracellular trafficking and secretion];
Region: VirB2; COG3838"
/db_xref="CDD:33630"
gene complement(196452..197303)
/locus_tag="A1E_00865"
/db_xref="GeneID:5626622"
CDS complement(196452..197303)
/locus_tag="A1E_00865"
/EC_number="1.9.3.1"
/note="COG1845 Heme/copper-type cytochrome/quinol oxidase,
subunit 3"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase subunit III"
/protein_id="YP_001491906.1"
/db_xref="GI:157803357"
/db_xref="GeneID:5626622"
/translation="MSQKIILNNSHPITKSHLFHVVDPSPWPVLTSFALLLLVIGSVS
FMHGYKFNVYILSAGVISVVYCLYSWWRDVVKEGIVEHQHTIPVRKGLQIGMALFILT
EIVFFGVFFASFFKSSLSPVGLLDGVWVVKQGVWPPPTIKTFDPFDIPFINTLILLLS
GTTVTWAHYALEEKNQKDCVTALALTILLGIFFTTMQAYEYYHAAFKFTDGIYASNFY
LATGFHGAHVIIGTIFLIVCYFRAKRGDFTTEGNGHLGFKFAAWYWHFIDLVWLFLFT
FVYIFGS"
misc_feature complement(196461..197219)
/locus_tag="A1E_00865"
/note="Cytochrome c oxidase subunit III. Cytochrome c
oxidase (CcO), the terminal oxidase in the respiratory
chains of eukaryotes and most bacteria, is a multi-chain
transmembrane protein located in the inner membrane of
mitochondria and the cell membrane of...; Region:
Cyt_c_Oxidase_III; cd01665"
/db_xref="CDD:29485"
misc_feature complement(order(197061..197069,197076..197078,
197085..197090,197097..197099))
/locus_tag="A1E_00865"
/note="Subunit III/VIIa interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature complement(order(196536..196541,196581..196583,
196602..196604,197007..197009,197016..197021,
197052..197054,197070..197072,197079..197084,
197091..197096))
/locus_tag="A1E_00865"
/note="Phospholipid binding site [chemical binding]; other
site"
/db_xref="CDD:29485"
misc_feature complement(order(196647..196649,196659..196661,
196668..196673,196956..196958,196974..196979,
196989..196991,196998..197000,197031..197036,
197043..197045))
/locus_tag="A1E_00865"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature complement(196887..196889)
/locus_tag="A1E_00865"
/note="Subunit III/VIb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature complement(order(196671..196679,196692..196700,
196728..196730,196806..196808,196857..196865))
/locus_tag="A1E_00865"
/note="Subunit III/VIa interface; other site"
/db_xref="CDD:29485"
misc_feature complement(196770..196772)
/locus_tag="A1E_00865"
/note="Subunit III/Vb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
gene complement(197901..198440)
/gene="dapD"
/locus_tag="A1E_00870"
/db_xref="GeneID:5626727"
CDS complement(197901..198440)
/gene="dapD"
/locus_tag="A1E_00870"
/EC_number="2.3.1.117"
/note="COG2941 Ubiquinone biosynthesis protein COQ7"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2-carboxylate
N-succinyltransferase"
/protein_id="YP_001491907.1"
/db_xref="GI:157803358"
/db_xref="GeneID:5626727"
/translation="MPRPDFSDPHKQIHEIIRVNHAGEYGATRIYQGQLKYIKSQNDY
ILIKEMLDHEEIHLNFFEKKLLEKKVRPTILLFLWHYYGFLLGALSSLMGIKTAMLIT
ESVEEVIEKHYEQQINDWHGLGCEQELLDNITKFRLDEIEHKNIAIMHDSTKTIFAEI
SSKVVKIICRISIILSKKI"
misc_feature complement(197907..198404)
/gene="dapD"
/locus_tag="A1E_00870"
/note="Demethoxyubiquinone hydroxylase, ferritin-like
diiron-binding domain; Region: DMQH; cd01042"
/db_xref="CDD:153101"
misc_feature complement(order(198012..198014,198021..198023,
198123..198125,198270..198272,198279..198281,
198369..198371))
/gene="dapD"
/locus_tag="A1E_00870"
/note="diiron binding motif [ion binding]; other site"
/db_xref="CDD:153101"
gene complement(198589..199560)
/gene="holA"
/locus_tag="A1E_00875"
/db_xref="GeneID:5626728"
CDS complement(198589..199560)
/gene="holA"
/locus_tag="A1E_00875"
/note="required for the assembly and function of the DNAX
complex which are required for the assembly of the beta
subunit onto primed DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta"
/protein_id="YP_001491908.1"
/db_xref="GI:157803359"
/db_xref="GeneID:5626728"
/translation="MKFYFSQIKRLFALITAGKIRALLLYGPDKGYIEKICKHLVKSL
NMLQTSIEYTELNIASLEILLNSPNFFGQKELIKVRSVGNSIDQNLKIILSRDYINFP
VFIGEEMTSSSSFRKFFETEEYLAATACYHDDEVKIERIILDKVGKTNKIISKEANAY
LKAHLKGDHNLVCNEINKLIYFVHDRKEITLNDVLEVISSEITANGSDLAIYFSKKDY
SNFLQELDILKKQNINEVLMIRALIRHYLNLYIVLSKVKNGECLELAIKSLSPPIFYQ
YINDFTKIASSLSLAECLETLKLLQQAEVEYKLNPASFDLLQKIYTR"
misc_feature complement(198598..199560)
/gene="holA"
/locus_tag="A1E_00875"
/note="DNA polymerase III subunit delta; Reviewed; Region:
holA; PRK06585"
/db_xref="CDD:180631"
gene complement(199727..200197)
/locus_tag="A1E_00880"
/db_xref="GeneID:5626729"
CDS complement(199727..200197)
/locus_tag="A1E_00880"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491909.1"
/db_xref="GI:157803360"
/db_xref="GeneID:5626729"
/translation="MRSVFIIIFFLISSCNLKPVYREAYNRNDDLEAIEVEPIKTIEG
AEFYHRLTSILPQRTKAKYLLKVELIATTMPATIDKKSNILREYINQLVRYKLIDIES
QKVLIEEQFYQNTSYNAIFTPYATNVERHGTGIDLAYQAAEEIRSRLILYFIRK"
gene 200419..200691
/locus_tag="A1E_00885"
/db_xref="GeneID:5626730"
CDS 200419..200691
/locus_tag="A1E_00885"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491910.1"
/db_xref="GI:157803361"
/db_xref="GeneID:5626730"
/translation="MKLYITCSSIQKCSKSNKNIYINTDKAKTVKITKEDLEKSFKLH
EEKLIILAQKLSSQEPINNDNYNPQTEYYRLIGDDGISQYIPTTEL"
gene complement(200877..200969)
/locus_tag="A1E_00890"
/db_xref="GeneID:5626731"
CDS complement(200877..200969)
/locus_tag="A1E_00890"
/note="COG1466 DNA polymerase III, delta subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491911.1"
/db_xref="GI:157803362"
/db_xref="GeneID:5626731"
/translation="MFLESNPNVLIHEVAEHGKKDLVVEILDAN"
gene complement(201646..203139)
/gene="holA"
/locus_tag="A1E_00895"
/db_xref="GeneID:5626433"
CDS complement(201646..203139)
/gene="holA"
/locus_tag="A1E_00895"
/note="COG0265 Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta"
/protein_id="YP_001491912.1"
/db_xref="GI:157803363"
/db_xref="GeneID:5626433"
/translation="MILQEVKMTKLSIVLKLLFIINLVFLNKIVLASAEMNSTIFEKA
KKAIVTIDTRIAVSAYEDTSSWTGTGFINDKQNGYIITNTHVVGVASIGTYFVTFYNG
EQAEAKLIYYDIWQDYAILKVESKDIPASVTQISFASELPKLNQKVFVVGNTEAQGFS
FHTGYLSDLYNIAGMMPQCTYVISLNTTGGASGSPVLNDKIEAIGVLYGGGKTHSLAL
HGDYVARTLESLKNNKEPKRHHIGVISELYSLNKAVKHHNFPKEEMDKYINKFPDSRN
RVISVKTILAGSPAEKLLKAGDIIWAVNDKELGGNLALFDKEMDNFKGIAIKLTIFRD
GKKLEQVVDLYDINSNKITKMVNFGGAIFFETDDYFSNKSGIPLKALSIASVQSGSSF
SSIPTFFTKDYKNIYRLQMLEIKDLNLSNIDDLVKFLPAITKEKFITVRFRNYQPYYA
NFGYNELISSHNNMIADVTLDSIDIKPYILKYNTISHDWDMENIKFQ"
misc_feature complement(202102..203109)
/gene="holA"
/locus_tag="A1E_00895"
/note="Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain
[Posttranslational modification, protein turnover,
chaperones]; Region: DegQ; COG0265"
/db_xref="CDD:30614"
misc_feature complement(202522..202938)
/gene="holA"
/locus_tag="A1E_00895"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature complement(202114..>202299)
/gene="holA"
/locus_tag="A1E_00895"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
gene 203206..205089
/gene="dnaK"
/locus_tag="A1E_00900"
/db_xref="GeneID:5626434"
CDS 203206..205089
/gene="dnaK"
/locus_tag="A1E_00900"
/note="heat shock protein 70; assists in folding of
nascent polypeptide chains; refolding of misfolded
proteins; utilizes ATPase activity to help fold;
co-chaperones are DnaJ and GrpE; multiple copies in some
bacteria"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_001491913.1"
/db_xref="GI:157803364"
/db_xref="GeneID:5626434"
/translation="MGKVIGIDLGTTNSCVAVMEGKEPKVIENSEGERTTPSIIAFAN
GEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFTDPMVKKDQDIVPYNIVKAQNGDAWV
EADNNKYSPSQISAFILQKMKETAENYLGEKVTQAVITVPAYFNDAQRQATKDAGKIA
GLEVLRIINEPTAAALAYGFDKSASKTIAVYDLGGGTFDISILEIGDGVFEVKSTNGD
TFLGGEDFDTRILNHLIDVFKKASGIDLRNDPLALQRLKEAAEKSKKELSSAVTTDIN
LPYITADSSGPKHLNIKFTRAELEKLVDDLIEKTIEPCRQALKDAGLKPSNIQEVVLV
GGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLS
LGIETLGGVFTRLIERNTTIPTKKSQIFSTADDNQHAVTIRVFQGERQMAKDNKLLGQ
FNLEGIPPAPRGVPQIEVTFDIDVNGIVHVSAKDKASGKEQKVTIQASGGLSDAEIAQ
MVKDAEQNADEDKKRKELIETKNAADSLVYSTEKTLKDYSDKLSSEDKGLVEEALAAL
KAVLDSEDAALIKEKTESLTAASMKIGEAMYKAQSEGQPSEENTANDEKVVDADFKDV
EKK"
misc_feature 203206..205086
/gene="dnaK"
/locus_tag="A1E_00900"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature 203206..204333
/gene="dnaK"
/locus_tag="A1E_00900"
/note="Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins; Region:
HSPA9-like_NBD; cd11733"
/db_xref="CDD:212683"
misc_feature order(203233..203244,203410..203412,203713..203715,
203785..203790,203794..203796,203872..203874,
203986..203988,203995..203997,204007..204009,
204208..204216,204220..204222)
/gene="dnaK"
/locus_tag="A1E_00900"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212683"
misc_feature order(203287..203289,203296..203298,203347..203349,
203359..203361,203368..203373,203377..203382,
203587..203598,203956..203958,203965..203970,
203977..203979,204031..204033,204037..204042)
/gene="dnaK"
/locus_tag="A1E_00900"
/note="NEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212683"
misc_feature order(203644..203649,203653..203658,203701..203706,
203710..203712,203833..203844)
/gene="dnaK"
/locus_tag="A1E_00900"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212683"
gene 205199..206326
/locus_tag="A1E_00905"
/db_xref="GeneID:5626435"
CDS 205199..206326
/locus_tag="A1E_00905"
/note="chaperone Hsp40; co-chaperone with DnaK;
Participates actively in the response to hyperosmotic and
heat shock by preventing the aggregation of
stress-denatured proteins and by disaggregating proteins,
also in an autonomous, dnaK-independent fashion"
/codon_start=1
/transl_table=11
/product="chaperone protein DnaJ"
/protein_id="YP_001491914.1"
/db_xref="GI:157803365"
/db_xref="GeneID:5626435"
/translation="MSQDYYQILGVSKTASSAELKKAYHKLAKQYHPDNAAAGDTNAE
KKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRRGAGGGTSSFHPDINDIFGDFF
SDFMGGSRRSRPTSSKVRGSDLKYDLTINLEEAFHGIEKNISFSSEVQCDTCHGNGSE
KGETITTCDACSGVGVTRIQQGFFTIEQTCHKCQGNGQMIKNPCKKCHGMGRYHKQRN
LLVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDISIKPHDIYKVDGANLHCKLPI
SFVNAALGGEVEVPIIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIH
VEVPKNLSKRQRELLEEFKKESMSEKENDSSFFNKMKSLWS"
misc_feature 205199..206323
/locus_tag="A1E_00905"
/note="chaperone protein DnaJ; Provisional; Region:
PRK14300"
/db_xref="CDD:172788"
misc_feature 205208..205375
/locus_tag="A1E_00905"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(205292..205300,205328..205330,205337..205342,
205349..205354)
/locus_tag="A1E_00905"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 205562..>205645
/locus_tag="A1E_00905"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:207897"
misc_feature order(205574..205576,205619..205636)
/locus_tag="A1E_00905"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature 205649..205831
/locus_tag="A1E_00905"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature order(205649..205651,205658..205660,205700..205702,
205709..205711,205766..205768,205775..205777,
205808..205810,205817..205819)
/locus_tag="A1E_00905"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature 205832..206221
/locus_tag="A1E_00905"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature order(206030..206035,206042..206047,206108..206119,
206207..206221)
/locus_tag="A1E_00905"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 206461..206649
/locus_tag="A1E_00910"
/db_xref="GeneID:5626436"
CDS 206461..206649
/locus_tag="A1E_00910"
/note="COG4572 Putative cation transport regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491915.1"
/db_xref="GI:157803366"
/db_xref="GeneID:5626436"
/translation="MLRIFYREAFNHAFERYNDADKRHKDDSREAVAHKVACSAVEKQ
YHKNDKGHWVEKISPRNL"
misc_feature <206461..206628
/locus_tag="A1E_00910"
/note="Putative cation transport regulator [General
function prediction only]; Region: ChaB; COG4572"
/db_xref="CDD:34210"
gene 206730..207473
/locus_tag="A1E_00915"
/db_xref="GeneID:5626437"
CDS 206730..207473
/locus_tag="A1E_00915"
/note="COG4105 DNA uptake lipoprotein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491916.1"
/db_xref="GI:157803367"
/db_xref="GeneID:5626437"
/translation="MKLAKLLSVLFIIGLSLSGCKSKKNSDDVVVPIPTLYNEGIILL
EKKKYKKAAEEFGRVFYQHPGNEMTPQAELMQAYSLFLATQYEEAVDVLDMFINLHPA
NVDIAYAYYLKALSYYMLISDVNHDQSRTFLAKDSFKDIIEKFSNTKYAIDASLKIDL
VNDHLAGKEMMVGRFYLKKKNPIAAINRFEEVINHYQTTSHSVEALYRLAESYMMLGL
PDEAKKYASVLGYNYPDSQWYSYAYKLVK"
misc_feature 206730..207470
/locus_tag="A1E_00915"
/note="DNA uptake lipoprotein [General function prediction
only]; Region: ComL; COG4105"
/db_xref="CDD:33862"
misc_feature 207339..207437
/locus_tag="A1E_00915"
/note="Tetratricopeptide repeat; Region: TPR_6; pfam13174"
/db_xref="CDD:205355"
gene 207631..209271
/locus_tag="A1E_00920"
/db_xref="GeneID:5626364"
CDS 207631..209271
/locus_tag="A1E_00920"
/note="COG0497 ATPase involved in DNA repair"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecN"
/protein_id="YP_001491917.1"
/db_xref="GI:157803368"
/db_xref="GeneID:5626364"
/translation="MLQSLLVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILF
CLGYKISNNIIKRGKDYAVVSIIYSLNEEIKNFLLQNFIEPEELLLVKCLHKTEGRKK
FFINNQVVNKTLMQQLATYLFELHGQNHNISLLEANTQRDILDSYGNILDFRAELSKC
YQIWKDTQKEIAEITLKQNSIEQEIDYLSFATEELTKLNIQIGEEEKLANIRKDLQNK
DKELQLIKDTLEQINNPEINISINRAEKLLARQGQNKHFKTIATSLEEAYNNLEEARQ
ELSNLLDSFNYKESNLEETEERLFLIKAISRKYNVPANGLGVFLDKSLEQLGILKNKI
ANSNELKAQEVLLQQKYYELASSLSKKRLIAAKHLEESLHQELKQLKMAKTIFRIEIT
ARKEPTACGNDDIVFKASTNPGTAAEVINKIASNGELSRCMLALKTSLFDKMVKASII
FDEIDVGIGGEVADKVGERLKKLSTVTQVIVITHQPQVAGKADLHIKIEKTQLEKETK
VTAKALNLSERQEELARMISGKTITKTSLKAAKELLHL"
misc_feature 207631..209268
/locus_tag="A1E_00920"
/note="ATPase involved in DNA repair [DNA replication,
recombination, and repair]; Region: RecN; COG0497"
/db_xref="CDD:30843"
misc_feature 207634..>208068
/locus_tag="A1E_00920"
/note="RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and...;
Region: ABC_RecN; cd03241"
/db_xref="CDD:73000"
misc_feature 207715..207738
/locus_tag="A1E_00920"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73000"
misc_feature order(207724..207729,207733..207741,208039..208041)
/locus_tag="A1E_00920"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73000"
misc_feature 208030..208041
/locus_tag="A1E_00920"
/note="Q-loop/lid; other site"
/db_xref="CDD:73000"
misc_feature <208831..209217
/locus_tag="A1E_00920"
/note="RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and...;
Region: ABC_RecN; cd03241"
/db_xref="CDD:73000"
misc_feature 208900..208929
/locus_tag="A1E_00920"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73000"
misc_feature 208972..208989
/locus_tag="A1E_00920"
/note="Walker B; other site"
/db_xref="CDD:73000"
misc_feature 208996..209007
/locus_tag="A1E_00920"
/note="D-loop; other site"
/db_xref="CDD:73000"
misc_feature 209068..209088
/locus_tag="A1E_00920"
/note="H-loop/switch region; other site"
/db_xref="CDD:73000"
gene 209552..210946
/gene="dnaK"
/locus_tag="A1E_00925"
/db_xref="GeneID:5626365"
CDS 209552..210946
/gene="dnaK"
/locus_tag="A1E_00925"
/note="COG2317 Zn-dependent carboxypeptidase"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_001491918.1"
/db_xref="GI:157803369"
/db_xref="GeneID:5626365"
/translation="MPIGSGESRSNEIITLTSLVHSMLKSPLLKELLSKAKEESKNLN
NWQNANIREIERKITDANCIDEQLQKKLVAATNKAELVWREARKNNDYNLFKPHLQKV
LDYTKEVAKARADVFNCGLYDSLIDMYDPSRKSNEIKQFFSVLKKELRELINKVLEKQ
KGEKKLVKISRLDPKMQKRIGKRIMEIMQFDLAKGRLDESNHPFCSGTPNDIRLTTRY
DKDNFISGLMGIIHETGHALYEQNLPEMYKGQPVGLAKGMAFHESQSLFMEMQVGRSR
EFTEFLAKLLHDEFNIKGEEYSAENLYRKITRVMPDFIRVDADEITYPMHVILRFEIE
ELLINGNLNLDDLPTFWDSNMVEYLGIKPTSFSNGCLQDIHWSHGSFGYFPAYTNGAI
IAAMMMKKVKEMHPNIKDDILNGDFSNLNNYLNKNFRNLGSLNNSADLLKSASGEDKI
NPEVYIKYLEGKYL"
misc_feature 209552..210943
/gene="dnaK"
/locus_tag="A1E_00925"
/note="Zn-dependent carboxypeptidase [Amino acid transport
and metabolism]; Region: COG2317"
/db_xref="CDD:32471"
misc_feature 209552..210943
/gene="dnaK"
/locus_tag="A1E_00925"
/note="Peptidase family M32 includes thermostable
carboxypeptidases TaqCP and PfuCP; Region: M32_Taq;
cd06460"
/db_xref="CDD:188998"
misc_feature order(210245..210250,210257..210259,210335..210337,
210674..210676,210701..210703,210710..210712)
/gene="dnaK"
/locus_tag="A1E_00925"
/note="active site"
/db_xref="CDD:188998"
misc_feature order(210245..210247,210257..210259,210335..210337)
/gene="dnaK"
/locus_tag="A1E_00925"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:188998"
gene 211183..213972
/gene="sucA"
/locus_tag="A1E_00930"
/db_xref="GeneID:5626366"
CDS 211183..213972
/gene="sucA"
/locus_tag="A1E_00930"
/EC_number="1.2.4.2"
/note="SucA; E1 component of the oxoglutarate
dehydrogenase complex which catalyzes the formation of
succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
reaction of 2-oxoglutarate with dihydrolipoamide
succinyltransferase-lipoate to form dihydrolipoamide
succinyltransferase-succinyldihydrolipoate and carbon
dioxide"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate dehydrogenase E1 component"
/protein_id="YP_001491919.1"
/db_xref="GI:157803370"
/db_xref="GeneID:5626366"
/translation="MEEYLKKTDFLFGGNAVFLEELYRQYLTNPTSVDQTWRKFFSQI
KDNNESLFNKSTAKIIISNDTKKESLNNNLSSEILNSFKAKEMINAYRKYAHYLANLD
PLGLEIRKTKNDLKLNIETFGFDSGQLEDNINITDEFVGTWNCKLSELVTKLDKVYTN
SIGIEFEQIENVEEKNWLYNKLESEVIFSSEEKKAILNDLVEVEGFEQYLHTKFPGAK
RFSIEGGDASIVAMSKAIDLSMHQGVEELVIGMAHRGRLNTITKVVGKPYKAVIAGFI
SGSVFPDELNVSGDVKYHLGYSSDRVVGDKKIHLSLAYNPSHLEAVNPIVAGKVRAKQ
DILKDTKRNKVKAILVHGDAAFCGQGVVAESLSMSPLAAYDIGGILHFVINNQLGFTA
NAADTRASRYSTEFAKIIAAPILHVNGDDIEAVLKATNIAVEYRQKFGKDVVVEIVCY
RKYGHNEGDEPMYTQGQMYNIIKSKLTPGNIYANELVKSGIIDHNYFPKLKEAFKAKL
DKEYEHAKSYKHEAHFLGGLWQGISRTLKSTSVTGINKKTLQDLGIKLCTIPKNFTVN
AKLVKLFDARKASLTTDKPIDWATAEQLAFATLLNTGTYIRLTGQDSERGTFSHRHSV
LHNQIDDTTYIPLNNLSKNQAKCEVADSNLSEYAVLGFEYGYSLANPKNLILWEAQFG
DFANGAQIIFDQFIASAETKWLRMSGLVVLLPHAFEGQGPEHSSARLERFLQLAAEDN
MYVTYPTTPASIFHLLRRQILDDTRKPLIVMSPKSLLRHKYAVSKLDELGENTTFLPV
LDEVNKVDANNITKVILCSGKVYYDLFEMRGNNSNIAIIRLEQLYPFEKKVVASLLKK
YNRTQEFIWCQEEPKNMGAWRYIVSHLNDALKEAAINNEFKYVGREESASPAVGSLQV
HNKQQERLLKEAIEI"
misc_feature 211183..213966
/gene="sucA"
/locus_tag="A1E_00930"
/note="2-oxoglutarate dehydrogenase E1 component;
Reviewed; Region: sucA; PRK09404"
/db_xref="CDD:181824"
misc_feature 211798..212589
/gene="sucA"
/locus_tag="A1E_00930"
/note="Thiamine pyrophosphate (TPP) family, E1 of
OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the 2-oxoglutarate
dehydrogenase multienzyme complex (OGDC). OGDC catalyzes
the oxidative decarboxylation of...; Region:
TPP_E1_OGDC_like; cd02016"
/db_xref="CDD:48179"
misc_feature order(212137..212139,212236..212247,212338..212340,
212344..212346)
/gene="sucA"
/locus_tag="A1E_00930"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48179"
misc_feature 212932..213522
/gene="sucA"
/locus_tag="A1E_00930"
/note="Transketolase, pyrimidine binding domain; Region:
Transket_pyr; pfam02779"
/db_xref="CDD:202390"
misc_feature order(213133..213138,213145..213147,213238..213243,
213256..213258,213376..213378,213388..213390)
/gene="sucA"
/locus_tag="A1E_00930"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132915"
misc_feature order(213133..213138,213145..213147,213154..213156,
213163..213168,213172..213180,213187..213189,
213259..213264,213274..213276)
/gene="sucA"
/locus_tag="A1E_00930"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132915"
misc_feature order(213148..213150,213241..213243)
/gene="sucA"
/locus_tag="A1E_00930"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132915"
gene 214141..215346
/locus_tag="A1E_00935"
/db_xref="GeneID:5626367"
CDS 214141..215346
/locus_tag="A1E_00935"
/note="component of 2-oxoglutarate dehydrogenase complex;
catalyzes the transfer of succinyl coenzyme A to form
succinyl CoA as part of the conversion of 2-oxoglutarate
to succinyl-CoA"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide succinyltransferase"
/protein_id="YP_001491920.1"
/db_xref="GI:157803371"
/db_xref="GeneID:5626367"
/translation="MSIKIIVPSLGESVTEATIAKWYKKEGDSVKTDDLLLEIETEKV
TLEVNAPCNGTIGKILKTDGANVEVGEEIGEINEGAVANTAGTNNESANSQAATQPTS
EKPIEKPAVANNTLAPSVQKLVTENKLDPNNIKGTGRDGRITKGDVLETLNTPPAATT
APAMSKANEDRVQRVRMSRLRKTIAQRLKDSQNTAAILTTFNEIDMSKVIALRNQYKE
EFEKKHAVKLGFMSFFVKATIEALKLIPSVNAEIDGNDLVYKNYYDIGVAVGTELGLV
VPVVRGADKMEFAEVEKAIGTLAKKAREGKLSMADLSGGTFSISNGGVYGSLLSTPII
NPPQAGILGLHKTEERPVVIDGKIEVRPMMYIALSYDHRIIDGKEGVSFLIKIKQLIE
HPEKLLLNL"
misc_feature 214141..215343
/locus_tag="A1E_00935"
/note="dihydrolipoamide succinyltransferase; Validated;
Region: PRK05704"
/db_xref="CDD:180214"
misc_feature 214147..>214320
/locus_tag="A1E_00935"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(214237..214239,214258..214275,214285..214287)
/locus_tag="A1E_00935"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 214267..214269
/locus_tag="A1E_00935"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 214486..214590
/locus_tag="A1E_00935"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature 214702..215337
/locus_tag="A1E_00935"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:201074"
gene 215505..215921
/locus_tag="A1E_00940"
/db_xref="GeneID:5626368"
CDS 215505..215921
/locus_tag="A1E_00940"
/note="COG0720 6-pyruvoyl-tetrahydropterin synthase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491921.1"
/db_xref="GI:157803372"
/db_xref="GeneID:5626368"
/translation="MIKCTRRIEFDSGHRIIGHQNKCQFLHGHRYVLEITIAANKTDT
LGMVIDFGLIKDLAKKWIDKNFDHSLILHQDDKEMGQQIENCTGQKIYYMRNNPTAEN
IAIHLKNEIFPKLFINQQFSVTSLKLFETPNCFVEV"
misc_feature 215511..215918
/locus_tag="A1E_00940"
/note="6-pyruvoyl tetrahydropterin synthase; Region: PTPS;
pfam01242"
/db_xref="CDD:201680"
misc_feature order(215583..215585,215589..215591,215892..215894,
215910..215912)
/locus_tag="A1E_00940"
/note="active site"
/db_xref="CDD:29764"
gene 215924..216388
/locus_tag="A1E_00945"
/db_xref="GeneID:5626648"
CDS 215924..216388
/locus_tag="A1E_00945"
/note="COG1324 Uncharacterized protein involved in
tolerance to divalent cations"
/codon_start=1
/transl_table=11
/product="periplasmic divalent cation tolerance protein"
/protein_id="YP_001491922.1"
/db_xref="GI:157803373"
/db_xref="GeneID:5626648"
/translation="MHLDEMKMGYMQITLDKGKESVSRGTEHTKVREYPRTYKDDIVN
FSSSSSIQDYCLTLTTTNDLQIAEKIASVLLELNLAACIQIDNVKSYFRWDSRVTLET
EYRLIIKAKSSNYKKIENKILEIHNYELPQIIKINIDYGFQKYLKWIDQNSK"
misc_feature 215939..216067
/locus_tag="A1E_00945"
/note="Rickettsial palindromic element RPE5 domain;
Region: RPE5; TIGR03776"
/db_xref="CDD:163488"
misc_feature 216077..216385
/locus_tag="A1E_00945"
/note="Uncharacterized protein involved in tolerance to
divalent cations [Inorganic ion transport and metabolism];
Region: CutA; COG1324"
/db_xref="CDD:31515"
gene 216429..217628
/locus_tag="A1E_00950"
/db_xref="GeneID:5626649"
CDS 216429..217628
/locus_tag="A1E_00950"
/codon_start=1
/transl_table=11
/product="proton/sodium-glutamate symport protein"
/protein_id="YP_001491923.1"
/db_xref="GI:157803374"
/db_xref="GeneID:5626649"
/translation="MKLWQKVTLGLILGIIFGIYLPQYVNYIKPIGDIFLRLIKMIIT
PLIFFSLVSGITSMNDTSALGRVGMKAVAAFLGTTFFATVFGLTVALVLKPGVGIHID
FASSETTSRTSFNIIDFFVNIVPDNAVGAFAKGDVLQVVFFAIFVGITLNKMKSINEP
ITDLIHVMSKLILKMISFVIQLSPYGAFALTGWIVGMQGVEVMISLSKLVVAVVVAMT
FQYLVFGLLIYLFCRVSPIPFYKKSFEYQMLAFATSSSKATLATTMQVCREKLGISES
STAFVLPIGASINMDGFAINLSLTTIFFAQMMGVTLTPHDYLVIIITSTLGSIGGAGI
PGASLIMLPMVLSSVHLPIEGVAIIAGIDRILDMLRTTINITGDATITMIIDNSEDTL
DKEVYLS"
misc_feature 216492..217625
/locus_tag="A1E_00950"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
misc_feature 216492..217592
/locus_tag="A1E_00950"
/note="Sodium:dicarboxylate symporter family; Region: SDF;
pfam00375"
/db_xref="CDD:201189"
gene 217966..218178
/locus_tag="A1E_00955"
/db_xref="GeneID:5626650"
CDS 217966..218178
/locus_tag="A1E_00955"
/EC_number="2.3.1.61"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide acetyltransferase"
/protein_id="YP_001491924.1"
/db_xref="GI:157803375"
/db_xref="GeneID:5626650"
/translation="MIGTTQGLIQALKPKTIIKFGSFKGGSAILVGDIQSLSVKDGKI
ISIDIDFDNIDQTVKEDNRIEFLQGD"
misc_feature 217975..>218175
/locus_tag="A1E_00955"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(219739..219831)
/locus_tag="A1E_00960"
/db_xref="GeneID:5626651"
CDS complement(219739..219831)
/locus_tag="A1E_00960"
/note="COG1301 Na+/H+-dicarboxylate symporters"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491925.1"
/db_xref="GI:157803376"
/db_xref="GeneID:5626651"
/translation="MLGGWPPLDYAISNNNIEIANFVLQSGVHL"
gene complement(220076..221236)
/locus_tag="A1E_00965"
/db_xref="GeneID:5626652"
CDS complement(220076..221236)
/locus_tag="A1E_00965"
/note="catalyzes the oxygen-independent formation of
protoporphyrinogen-IX from coproporphyrinogen-III"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_001491926.1"
/db_xref="GI:157803377"
/db_xref="GeneID:5626652"
/translation="MKVTTDDLSIYIHWPFCLSKCPYCDFNSHVASTIDHEQWLKSYE
REIEYFKPIIQNKYIKSIFFGGGTPSLMDPVIVEVIINKIINIAIIDHQTEITLETNP
TSFETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIETANTIFPRVS
FDLIYARSGQKLKDWQEELKQAMQLATSHISLYQLTIEKGTLFYKLFRDGTLILPHSD
EAAEMYEWTNHYLESKKYFRYEISNYALVSQECLHNLTYWNYNSYLGIGPGAHSRIIE
PSSSVLAIMMWHKPEKWLDSVKIKNVGIQTNIKLTHQEVIAEMLMMGLRLKSGINLSI
LEQKLNTKLENILDMNNLKHYQNQDLIKLDQNVYLTDKGLMLHSYIVPRLIK"
misc_feature complement(220079..221236)
/locus_tag="A1E_00965"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK06582"
/db_xref="CDD:180630"
misc_feature complement(220616..221188)
/locus_tag="A1E_00965"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(220652..220657,220745..220747,
220865..220867,220934..220942,221033..221038,
221042..221044,221162..221170,221174..221176,
221180..221182,221186..221188))
/locus_tag="A1E_00965"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(220112..220309)
/locus_tag="A1E_00965"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(221532..221672)
/locus_tag="A1E_00970"
/db_xref="GeneID:5626643"
CDS complement(221532..221672)
/locus_tag="A1E_00970"
/note="COG0635 Coproporphyrinogen III oxidase and related
Fe-S oxidoreductases"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001491927.1"
/db_xref="GI:157803378"
/db_xref="GeneID:5626643"
/translation="MFDHGALKNTWINDYQLINVYDISDQKLKENALSGILQFFMKHI
HA"
misc_feature complement(221538..>221672)
/locus_tag="A1E_00970"
/note="Putative transposase, YhgA-like; Region:
Transposase_31; pfam04754"
/db_xref="CDD:203082"
gene complement(222056..223405)
/locus_tag="A1E_00975"
/db_xref="GeneID:5626644"
CDS complement(222056..223405)
/locus_tag="A1E_00975"
/note="COG0541 Signal recognition particle GTPase"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_001491928.1"
/db_xref="GI:157803379"
/db_xref="GeneID:5626644"
/translation="MFKTLTQNLTKAFDQLVGSGILTEAQIDATMRDIRVALLESDVA
LPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLAASESETKLNLNSKPP
VNFLMVGLQGSGKTTASGKLALRLKNHNKKVLLVSLDTYRPAAQEQLAILANLVQINS
LPIVQGEKPLDIVKRAIAEAKLSAYDVVIYDTAGRTQIDKEMMEEALSIKKIVEPTET
LLVIDSMTGQDAVVTASSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSN
GEKLTDLEEFDAKRLASRILDMGDIISFIEKASGLVNREEAEKTAAKLKKGKFDLNDY
MQQIRSIKKMGGFGSILSMLPGSGKIMDQIDQSKLNSKIIEHQEAIILSMTPKERKNP
DIINASRRKRIALGAGTTVQKVNILLKQYKQISDMMKKASKVNPKNLLRSGLGKVFS"
misc_feature complement(222107..223405)
/locus_tag="A1E_00975"
/note="signal recognition particle protein; Provisional;
Region: PRK10867"
/db_xref="CDD:182793"
misc_feature complement(223148..223381)
/locus_tag="A1E_00975"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; smart00963"
/db_xref="CDD:198031"
misc_feature complement(222581..223093)
/locus_tag="A1E_00975"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:48379"
misc_feature complement(223058..223081)
/locus_tag="A1E_00975"
/note="P loop; other site"
/db_xref="CDD:48379"
misc_feature complement(order(222647..222652,222659..222661,
222824..222826,222989..222991))
/locus_tag="A1E_00975"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:48379"
misc_feature complement(222122..222421)
/locus_tag="A1E_00975"
/note="Signal peptide binding domain; Region: SRP_SPB;
pfam02978"
/db_xref="CDD:202493"
gene complement(223601..224395)
/locus_tag="A1E_00980"
/db_xref="GeneID:5626645"
CDS complement(223601..224395)
/locus_tag="A1E_00980"
/note="catalyzes the DNA-template-directed extension of
the 3'-end of a DNA strand; the delta' subunit seems to
interact with the gamma subunit to transfer the beta
subunit on the DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta'"
/protein_id="YP_001491929.1"
/db_xref="GI:157803380"
/db_xref="GeneID:5626645"
/translation="MIIERLEFNLKYNKLYNSWLIEAENIEQALKDVEDFIYVKLFKN
NIPLENNPDYHFIARETSSISNVKNISIEQIRKLQDFLNKTSAVSGYKVAVIYSADLM
NLNAANSCLKILEDVPKNSYIFLITSRAASIIATIRSRCFKINMRSSIHNTQNPLYSE
FIQPIADDKTLDFINRFTTKDRELWLDFIDNILLLMNRILKKSANVNIELLDLENKIF
NKLSNQHPSYLLQKFTNIKKLIYNTIDYDLDLKASYILVVNEFSSN"
misc_feature complement(223604..224392)
/locus_tag="A1E_00980"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK06581"
/db_xref="CDD:180629"
gene complement(224693..225025)
/locus_tag="A1E_00985"
/db_xref="GeneID:5626646"
CDS complement(224693..225025)
/locus_tag="A1E_00985"
/note="COG0776 Bacterial nucleoid DNA-binding protein"
/codon_start=1
/transl_table=11
/product="DNA-binding protein HU"
/protein_id="YP_001491930.1"
/db_xref="GI:157803381"
/db_xref="GeneID:5626646"
/translation="MSAHNKHESKKMNKTEFIAFMTNHGRNHKHASYKSLTKADAEKA
LNLVLDSVINAIKSHYNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAG
RKMKEACN"
misc_feature complement(224702..224989)
/locus_tag="A1E_00985"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature complement(order(224702..224704,224723..224725,
224729..224731,224741..224746,224810..224812,
224825..224830,224837..224851,224861..224866,
224873..224878,224885..224887,224927..224929,
224966..224968,224975..224977,224984..224989))
/locus_tag="A1E_00985"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature complement(order(224717..224719,224726..224728,
224732..224734,224744..224746,224774..224785,
224792..224794,224798..224803,224807..224809,
224819..224821,224828..224833,224837..224839,
224843..224845,224888..224890,224981..224989))
/locus_tag="A1E_00985"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 225535..228561
/locus_tag="A1E_00990"
/db_xref="GeneID:5626647"
CDS 225535..228561
/locus_tag="A1E_00990"
/note="COG0841 Cation/multidrug efflux pump"
/codon_start=1
/transl_table=11
/product="hydrophobe/amphiphile efflux-1 HAE1 family
protein"
/protein_id="YP_001491931.1"
/db_xref="GI:157803382"
/db_xref="GeneID:5626647"
/translation="MLLSEICIKRPVFTTVLSLVIVALGGFFVTKLQIRGTPDISVPI
INVNAYYAGADALYMEKEITTRIEKALKTVKNLDYITSHSSTGKSSITLSFLLSTDIE
VALNDVRSKISDITYMFPHDMKTPSVAKLDTNSFPSLIISIESDQYSDLELTKIVKDS
LQTPLDKLTSVGQSQIYGGREYIMRIEPDSKKLYQYKISLLEIESAIKEQNKDYPAGT
IKTRSNNFIVTLQGSLSTPEEFGNIILKVQNRSIIKLRDIAKISLTSPDKDIIFRYNG
KSSIALGLIKESKANVIDLSNEVTKELERIKKLMPKGISMGVVYDGATPIKESIYAVF
QTIVEALILVVLVIYLFLASAKMTLILFVTIPVSLIGTFSVMYAFGFSINIFTLLAMI
LAIGIVVDDAIVMLENIFRYNEMGHKPMAAAMLASKEIGFAIIAMTITLAAVFLPVGF
IEGFIGKLFIEFAWTLACCVLFSGFVALTLTPMMSSRMVTKHSKDLPKFLVKFNDILQ
FIQNKYIYYLNLTFENKKKIVIIIASSFIVLIISFKFTQKVFIPQEDDGFLQLSLKGP
EGSSLESSTKVVTEAEKILANYKDILGYLMIIGAGGSDNVFGFIPLKDWSDRSRSQET
IKNILNKQFSEIPGMSIFAMAPRSMVSGNAISPIEFTIQTSLEYDDLDKISQQFIDIM
KTNPIFLNVNRNLQSTIPTISIDVKRDKAYLYGMDLANIGKTVQYLLAGQQIGDFRIG
NDLYNVILQFNPKDRKDISAFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSK
SVTISSDLTPDGKINDAIDEINKIAAKLLDPSNTIIEYIGEIKQMREANSNMLITFVF
ALVFIYLVLAAQFESFTDPLLILLAVPFSITGGVLTLWLAGNSLNMYSNIGLITLIGL
ITKNSIMIVEFANQLREKGVKVRTAIIESSKLRLRPILMTNLAAVVGALPLVFADGTG
AAARNSIGFVIVGGLSFGTIFTIFVIPVIYQTFKKD"
misc_feature 225541..228555
/locus_tag="A1E_00990"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
gene 228648..228857
/locus_tag="A1E_00995"
/db_xref="GeneID:5626438"
CDS 228648..228857
/locus_tag="A1E_00995"
/note="COG2155 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491932.1"
/db_xref="GI:157803383"
/db_xref="GeneID:5626438"
/translation="MLINTSNNLLITTIHLLSSIGAINWGLVGLCNFNLVTLLFGSFP
IIVTILYIIIGFCGVYSFLYLGKLF"
misc_feature <228708..228854
/locus_tag="A1E_00995"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2155"
/db_xref="CDD:32338"
gene complement(228970..229743)
/locus_tag="A1E_01000"
/db_xref="GeneID:5626439"
CDS complement(228970..229743)
/locus_tag="A1E_01000"
/note="in Escherichia coli RsmE methylates the N3 position
of the U1498 base in 16S rRNA; cells lacking this function
can grow, but are outcompeted by wild-type; SAM-dependent
m(3)U1498 methyltransferase"
/codon_start=1
/transl_table=11
/product="16S ribosomal RNA methyltransferase RsmE"
/protein_id="YP_001491933.1"
/db_xref="GI:157803384"
/db_xref="GeneID:5626439"
/translation="MKYNRIYINSHLAENSKLELANDHIHYIKTVLRLKVNDGLRIFN
GTDGEFLAQITDIGKNNLSVKLKEQLKKPDTESALTLAVAIIKQDKLMLTINMATQLG
ITKIIPLITKRCQFRSVNIKRLTKCMIEATEQSERLIPPIIEQAIKLQDYLKKNNNLM
LYANEYEKEENSILQITSLLNNSDIDIVIGPEGGFTIDELQLLASYKNTKSISLGSNI
LRAETAAITAIAQVALTISFLRRWKSEKKYNNTSSIYAF"
misc_feature complement(229015..229734)
/locus_tag="A1E_01000"
/note="16S ribosomal RNA methyltransferase RsmE;
Provisional; Region: PRK11713"
/db_xref="CDD:183286"
misc_feature complement(229048..229692)
/locus_tag="A1E_01000"
/note="RNA methyltransferase; Region: Methyltrans_RNA;
pfam04452"
/db_xref="CDD:203020"
gene complement(230225..230386)
/locus_tag="A1E_01005"
/db_xref="GeneID:5626440"
CDS complement(230225..230386)
/locus_tag="A1E_01005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491934.1"
/db_xref="GI:157803385"
/db_xref="GeneID:5626440"
/translation="MKFKIPIEVDIKSLTDEETALDSLNANILNALTEVNDSLIQDSI
NYVILIHWQ"
gene complement(230518..230709)
/locus_tag="A1E_01010"
/db_xref="GeneID:5626441"
CDS complement(230518..230709)
/locus_tag="A1E_01010"
/codon_start=1
/transl_table=11
/product="bifunctional penicillin-binding protein 1C"
/protein_id="YP_001491935.1"
/db_xref="GI:157803386"
/db_xref="GeneID:5626441"
/translation="MWETTLILFDAYKYLFTKCLAAHPQDIMYNQLISLPIKFNQKNL
MQSTIIKLIISFGLQVMHE"
gene 231923..232018
/locus_tag="A1E_01015"
/db_xref="GeneID:5626442"
CDS 231923..232018
/locus_tag="A1E_01015"
/note="COG1385 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491936.1"
/db_xref="GI:157803387"
/db_xref="GeneID:5626442"
/translation="MLSNAAVVAGDKDARVLDKDVWIASIYCTNK"
gene complement(232940..233386)
/locus_tag="A1E_01020"
/db_xref="GeneID:5625892"
CDS complement(232940..233386)
/locus_tag="A1E_01020"
/note="COG0589 Universal stress protein UspA and related
nucleotide-binding proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491937.1"
/db_xref="GI:157803388"
/db_xref="GeneID:5625892"
/translation="MSGNIRFKNILIPIDLNDKKSIKGILSKALMLATSFQAKLYFMY
VIPEFGTKLFEDYLPKNWRTEKKEKYQAQIKELIKQYIPDEIATDYYIGSGAVYDEII
KHSNEIKADLIIISAVRLQLKDYMLGPNASKIVRHSDISVLVVRDQ"
misc_feature complement(232952..233362)
/locus_tag="A1E_01020"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature complement(order(232994..233005,233030..233035,
233039..233044,233252..233254,233342..233350))
/locus_tag="A1E_01020"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene complement(233396..234346)
/locus_tag="A1E_01025"
/db_xref="GeneID:5625893"
CDS complement(233396..234346)
/locus_tag="A1E_01025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491938.1"
/db_xref="GI:157803389"
/db_xref="GeneID:5625893"
/translation="MNSLKLGLYTTIVSILLIYSNIYAAPKVIKIGTGSILKGYYAIG
LDLCKTITNDNKNNEHIKCEVVATNGSIENLKLLQQGKIDLALVQANIALEAYEGIGY
YHDQEKMQNLRQVLNLHDEFFTVIVKDEDKIKVFADIDGKKITNGPAFSGSNITYDAV
RSLYKFSKAPEELQINYEDSIDKFCNKEIDAIIMMVGHSNPLVNLIANKCKVDFISIE
NDKIAKLVKQNRAFHKTILHKGLYPAIANDQTTIKVSAILVTRDDANRDILDKFIGAF
HRNVANFKLSNYLLNNFDINYFADTKNFVLPKHDAVRNKN"
misc_feature complement(233495..234331)
/locus_tag="A1E_01025"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
misc_feature complement(233399..234280)
/locus_tag="A1E_01025"
/note="TRAP-type uncharacterized transport system,
periplasmic component [General function prediction only];
Region: Imp; COG2358"
/db_xref="CDD:32505"
gene complement(234351..235421)
/locus_tag="A1E_01030"
/db_xref="GeneID:5625894"
CDS complement(234351..235421)
/locus_tag="A1E_01030"
/note="COG2358 TRAP-type uncharacterized transport system,
periplasmic component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491939.1"
/db_xref="GI:157803390"
/db_xref="GeneID:5625894"
/translation="MIRKILLFVFLAFTIIWFAIAYTIKNNVVSLIKNSESDNLKIYY
NVVKFSGYPFNWKITVTDPKVKLIDHVNSKEFTSENIVLNIAFSTKRATLNFGPFIRE
VANYGDKTFTYDIRSDDDIKSIGKFNKPLYKISKDDNLKEIFKSIQLNNKALSIFKDN
YEIFKINNLAFLIRKQNLASKENISLSLNMNYDSTKDILHFKNANLDIAISLKFAEDR
ENSAILQNFNIERLIFTCDNDSKVTVNGALQFFANKLPEGKLYFELENYNSIVDKLLP
NNIIFSKKIIKTIIAKAINKASDTDLNIDQNDTNWAYNNMDKAKFNIEFSDKGINIGS
INLLELKLGEHEEEQNTANNLN"
gene complement(235434..235772)
/locus_tag="A1E_01035"
/db_xref="GeneID:5625895"
CDS complement(235434..235772)
/locus_tag="A1E_01035"
/EC_number="2.7.7.7"
/note="COG0633 Ferredoxin"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta'"
/protein_id="YP_001491940.1"
/db_xref="GI:157803391"
/db_xref="GeneID:5625895"
/translation="MSGKIKVTFIINDGEEKTVEAPIGLSILEIAHSNDIDLEGACEG
SLACATCHVILEEEFYNKFKKPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVR
LPSATRNIKL"
misc_feature complement(235485..235754)
/locus_tag="A1E_01035"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature complement(order(235509..235514,235620..235631,
235638..235640,235647..235649,235656..235661))
/locus_tag="A1E_01035"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature complement(order(235509..235511,235620..235622,
235629..235631,235647..235649))
/locus_tag="A1E_01035"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
gene complement(235834..237771)
/gene="hscA"
/locus_tag="A1E_01040"
/db_xref="GeneID:5625896"
CDS complement(235834..237771)
/gene="hscA"
/locus_tag="A1E_01040"
/note="involved in the maturation of iron-sulfur
cluster-containing proteins"
/codon_start=1
/transl_table=11
/product="chaperone protein HscA"
/protein_id="YP_001491941.1"
/db_xref="GI:157803392"
/db_xref="GeneID:5625896"
/translation="MQIIEIKEPEQADFKQERQIAVGIDFGTTNSLIAVSTNRKVKVI
KTIDDKELIPTTIEFTDGNFTIGNNNGLRSIKRLFGKTLKEILNTPILFSLVKDYLDI
NSDKPKLNFANKRMRIPEIAAEVFIYLKNQAEKQLKTNITKAVITVPAHFNDAARGEV
ILAAKIAGLEVLRLIAEPTAAAYAYGLNKNRLTRKLPYREEFVGNMLQHSTATYKAVR
EDPSSGLTHKLPLEVELPEESNQNGYYLVYDLGGGTFDVSILNIQEGIFQVIATNGDN
MLGGDDIDVVITQYLCNKFDLPDSIDTLQLTKKVKETLTYEDNFNNDNISLNKQTLEL
LILPLIKRTINIAKECLEQAGNPNIDGVILVGGATRISLIKNELYKAFKVDILSDIDP
DKAVVWGAALQAENLITPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKE
FTTYADNQTGIQFHILQGEREMAVDCRSLARFELKGLPPMKAGDIRVEVTFAIDADGI
LSVSAYEKISHTSHTIEVKPNHGIDKTEIDIMLEKAYKNAKIDYTTRLLQEAVINAES
LIFNIERAIAKLTTLLSESEISIINSLLDNIKEAARTRDPILINNSIKDFKSKIQKSI
DTKFNIIINDLLKGKNINHIQ"
misc_feature complement(235837..237771)
/gene="hscA"
/locus_tag="A1E_01040"
/note="chaperone protein HscA; Provisional; Region: hscA;
PRK01433"
/db_xref="CDD:167230"
misc_feature complement(236557..237714)
/gene="hscA"
/locus_tag="A1E_01040"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature complement(order(236674..236676,237016..237027,
237241..237243,237676..237678,237682..237684,
237688..237699))
/gene="hscA"
/locus_tag="A1E_01040"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(237762..238262)
/gene="hscB"
/locus_tag="A1E_01045"
/db_xref="GeneID:5626244"
CDS complement(237762..238262)
/gene="hscB"
/locus_tag="A1E_01045"
/note="J-type co-chaperone that regulates the ATPase and
peptide-binding activity of Hsc66 chaperone; may function
in biogenesis of iron-sulfur proteins"
/codon_start=1
/transl_table=11
/product="co-chaperone HscB"
/protein_id="YP_001491942.1"
/db_xref="GI:157803393"
/db_xref="GeneID:5626244"
/translation="MQNYFQLLGLQQDYNIDLKILEKQYFAMQVKYHPDKAKTLQEKE
QNLIIAAELNKAYSTLKDALKRAEYMLLLQNINLNDQKARTLLSSLELSIFWDEMEII
ENTTICSDLEKIKAKYELMEKHEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKLQK
KIKSCK"
misc_feature complement(237765..238262)
/gene="hscB"
/locus_tag="A1E_01045"
/note="co-chaperone HscB; Provisional; Region: hscB;
PRK01356"
/db_xref="CDD:167217"
misc_feature complement(238077..238256)
/gene="hscB"
/locus_tag="A1E_01045"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(238098..238103,238110..238115,
238131..238133,238158..238166))
/gene="hscB"
/locus_tag="A1E_01045"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
gene 238535..239125
/gene="rnhB"
/locus_tag="A1E_01050"
/db_xref="GeneID:5626245"
CDS 238535..239125
/gene="rnhB"
/locus_tag="A1E_01050"
/EC_number="3.1.26.4"
/note="RNH2; RNase HII; binds manganese; endonuclease
which specifically degrades the RNA of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease HII"
/protein_id="YP_001491943.1"
/db_xref="GI:157803394"
/db_xref="GeneID:5626245"
/translation="MEIDLLQYEKKYQEYIVAGIDEAGRGPLAGPVVASAVVIDNTNI
ITGIKDSKKLSKRKRELLYEQITSNYIWSTAIISHTEIDEINILEATKKACSIAAANL
TIKPEIVLVDGNMQFNDKRFVSIIKGDNLSLSIAAASIVAKITRDRLMLDLSTEFPQY
LWYKNSGYGTKEHIQAINTHGLSPYHRKSFRYSCFI"
misc_feature 238586..239107
/gene="rnhB"
/locus_tag="A1E_01050"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature order(238595..238606,238793..238801,238808..238810,
238868..238870,238904..238906,238961..238963)
/gene="rnhB"
/locus_tag="A1E_01050"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature order(238595..238600,238868..238870,238919..238921)
/gene="rnhB"
/locus_tag="A1E_01050"
/note="active site"
/db_xref="CDD:187695"
gene complement(239262..241247)
/locus_tag="A1E_01055"
/db_xref="GeneID:5626246"
CDS complement(239262..241247)
/locus_tag="A1E_01055"
/note="The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. The beta-hairpin of the
Uvr-B subunit is inserted between the strands, where it
probes for the presence of a lesion"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit B"
/protein_id="YP_001491944.1"
/db_xref="GI:157803395"
/db_xref="GeneID:5626246"
/translation="MNNFSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGK
TFTMANIIARMNRPTLIMAHNKTLAAQIYSEMKLMFPKNAIEYFVSYYDYYQPEAYIA
RTDTFIEKDSSINEQIDLMRHSATRSLLERRDVIVVSSVSCIYGLGSPNLYYQMTVNL
ESGKSYPRDKLLSDLVNLQYERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFVGN
ELEYIHEFDPLTGTKLAKLDKAMVFGNSHFVIPQETVNKAISEIEVELQKRLELLKSQ
NKILETQRLNQRTQYDLEMLTTTGSCKGIENYSRFLTGRNAGEPPPTLFEYLPKDALL
FVDESHVSVPQIRAMYNGDRARKKVLVEHGFRLPSALDNRPLKFEEWEKFRPQTIFVS
ATPGPFELEETGGLVVELIIRPTGLLDPECIIKPATNQVEDLISEIQTTIAKGLRVLV
TTLTKKMAEDLTTYLQELKYKSSYLHSNVHTLERLEILRDLRQGTINILVGINLLREG
LDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSEGRVILYADKITKSIDKAVSE
TMRRRQIQQEYNEKHGIIPQTINRTIYALTALKKIDSKLDKKQAHILFDNPAKLKAHI
YKLKKAMLKAASNLEFEQATKLRDQLKNLEEAALELS"
misc_feature complement(239265..241247)
/locus_tag="A1E_01055"
/note="excinuclease ABC subunit B; Provisional; Region:
PRK05298"
/db_xref="CDD:180000"
misc_feature complement(<240933..241154)
/locus_tag="A1E_01055"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(241113..241127)
/locus_tag="A1E_01055"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(239592..239987)
/locus_tag="A1E_01055"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(239736..239744,239817..239822,
239880..239891))
/locus_tag="A1E_01055"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(239619..239621,239628..239630,
239640..239642,239718..239720))
/locus_tag="A1E_01055"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(239472..239597)
/locus_tag="A1E_01055"
/note="Ultra-violet resistance protein B; Region: UvrB;
pfam12344"
/db_xref="CDD:204889"
misc_feature complement(239283..239372)
/locus_tag="A1E_01055"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene 241318..241629
/locus_tag="A1E_01060"
/db_xref="GeneID:5626247"
CDS 241318..241629
/locus_tag="A1E_01060"
/note="COG0695 Glutaredoxin and related proteins"
/codon_start=1
/transl_table=11
/product="glutaredoxin, GrxC family protein"
/protein_id="YP_001491945.1"
/db_xref="GI:157803396"
/db_xref="GeneID:5626247"
/translation="MNKTILHTIIIYTLASCPYCIKAKALLDKKEVVYEEIEVSNFTQ
EEKEKLIKKAGGSRTVPQIFINNIHIGGNDDLQKLNEEGRLDKLLEGQPKKTPPAAAS
V"
misc_feature 241339..241566
/locus_tag="A1E_01060"
/note="Glutaredoxin (GRX) family, GRX bacterial class 1
and 3 (b_1_3)-like subfamily; composed of bacterial GRXs,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the...; Region:
GRX_GRXb_1_3_like; cd03418"
/db_xref="CDD:48633"
misc_feature order(241357..241359,241366..241374,241483..241485,
241492..241497)
/locus_tag="A1E_01060"
/note="GSH binding site [chemical binding]; other site"
/db_xref="CDD:48633"
misc_feature order(241366..241368,241375..241377)
/locus_tag="A1E_01060"
/note="catalytic residues [active]"
/db_xref="CDD:48633"
gene 243888..243989
/locus_tag="A1E_01080"
/db_xref="GeneID:5626248"
CDS 243888..243989
/locus_tag="A1E_01080"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491946.1"
/db_xref="GI:157803397"
/db_xref="GeneID:5626248"
/translation="MMRQNIRNNADIETTTVNQNLIAVSVVDTIIFS"
gene 244036..244212
/locus_tag="A1E_01085"
/db_xref="GeneID:5625836"
CDS 244036..244212
/locus_tag="A1E_01085"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491947.1"
/db_xref="GI:157803398"
/db_xref="GeneID:5625836"
/translation="MIIDSTSTDLPIARVSGINLPMAGLVSSETTNTNLTNYTDIGAV
ILVHKMQLLAWHVC"
misc_feature <244051..244140
/locus_tag="A1E_01085"
/note="secreted effector protein PipB; Provisional;
Region: PRK15197"
/db_xref="CDD:185119"
gene 244206..244334
/locus_tag="A1E_01090"
/db_xref="GeneID:5625837"
CDS 244206..244334
/locus_tag="A1E_01090"
/note="COG5265 ABC-type transport system involved in Fe-S
cluster assembly, permease and ATPase components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491948.1"
/db_xref="GI:157803399"
/db_xref="GeneID:5625837"
/translation="MLANTMRSRAVPNSASNNQNRIDILIRALWKLLLLELRILIK"
gene complement(245722..248340)
/locus_tag="A1E_01095"
/db_xref="GeneID:5625838"
CDS complement(245722..248340)
/locus_tag="A1E_01095"
/note="COG1074 ATP-dependent exoDNAse (exonuclease V) beta
subunit (contains helicase and exonuclease domains)"
/codon_start=1
/transl_table=11
/product="ATP-dependent helicase"
/protein_id="YP_001491949.1"
/db_xref="GI:157803400"
/db_xref="GeneID:5625838"
/translation="MSDLQQEASDPKYSVWVSASAGTGKTKVLTDRFLRLLIKGVEPA
NILCLTFTNAAAVEMQARINSKLKYLSLCNAEKLEEELFLMLGNKPLQPELENAKTLY
DKILNSNEPLNIYTIHAFCQKILKTCPLEAGITPEFKILEETKLQDIFLNIRNEIYLS
DEHNDLMKILLNRFHEITLQDIFSEIIEQKIKFKKLFTHKTIPGEIQNKRLALGELNN
IYDKVKNLFVKYDLEIEPKEFFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYH
LDELRRIEELEYHTNLLTKLAYIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKATHE
WLLHKLESKINHILVDEAQDTTPTQWNIITTLITEFNAMDKPNNSIFIVGDDKQSIFS
FQGADLRNFSLVNEQLKANLTKANKKFKNITLEYSYRSCTEILQFTHYVLQNIKSDYP
NLFFPDNPLISSFRTHQGTVTVWPLVTSKKQEELFWALPEDYKNSKSAADLLIEQIVN
FIKEKIESKEILPSICAMKSGYTKINLENSKEFVNQGAECILNVQCPSHSDYKNDSAN
FSNSSRISEKDFMILVRKRDEFSNNLIKELSKAKLKIEISDRINLKDHLSIMDLMSVA
KFVLLPDDDLNLACLLKSPIIGINEQQLYELLINKKDQSLWDTLSLYLDIYEKLNSFI
EIYKTSTAENFFTIVVNSLNLRELLNVHNGDDSDDMINELLTLSSNYANDIDNSLQGF
VAWFENNNIYIKRNMEHSDKIRVMTVHGSKGLEAPIVILCDSTSLPVSSNKFIWNDNG
EMFFSANAADTPQFLQELKEAEKLKDLQEYIRLLYVAMTRAKDHLIICGFSNKATTSE
NSWYKIAKQTFDKFFN"
misc_feature complement(<245740..248334)
/locus_tag="A1E_01095"
/note="double-strand break repair helicase AddA,
alphaproteobacterial type; Region: addA_alphas; TIGR02784"
/db_xref="CDD:211763"
misc_feature complement(<248149..248292)
/locus_tag="A1E_01095"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(246631..246765)
/locus_tag="A1E_01095"
/note="Rickettsial palindromic element RPE5 domain;
Region: RPE5; TIGR03776"
/db_xref="CDD:163488"
misc_feature complement(245800..>246093)
/locus_tag="A1E_01095"
/note="Family description; Region: UvrD_C_2; cl15862"
/db_xref="CDD:210262"
gene complement(248521..249222)
/locus_tag="A1E_01100"
/db_xref="GeneID:5625839"
CDS complement(248521..249222)
/locus_tag="A1E_01100"
/note="COG3346 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit B"
/protein_id="YP_001491950.1"
/db_xref="GI:157803401"
/db_xref="GeneID:5625839"
/translation="MTNKINLTNFFVLITFITLISLGFWQISRLKEKKLFLASMQANL
TSPAINLEELGSNFIYRKVKITGQFLLNKDIYLYGRRSMSSEKDGYYLVTPFKTLEEQ
IILVARGWFSNRNKNIITQAANNQKHEIIGVTMPSEKTRSYLPANDIKNNVWLTLDLK
AASKALGLNLENFYIIEEGKNISNLDILLPLSINHVKAIRNDHLEYALTWFGLAISLI
VIYVIYKRHYKIHNF"
misc_feature complement(248563..249168)
/locus_tag="A1E_01100"
/note="SURF1 superfamily. Surf1/Shy1 has been implicated
in the posttranslational steps of the biogenesis of the
mitochondrially-encoded Cox1 subunit of cytochrome c
oxidase (complex IV). Cytochrome c oxidase (complex IV),
the terminal electron-transferring...; Region: SURF1;
cd06662"
/db_xref="CDD:119401"
gene complement(249422..250111)
/locus_tag="A1E_01105"
/db_xref="GeneID:5625840"
CDS complement(249422..250111)
/locus_tag="A1E_01105"
/note="3'-5' exonuclease of DNA polymerase III"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="YP_001491951.1"
/db_xref="GI:157803402"
/db_xref="GeneID:5625840"
/translation="MSSLREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHF
YINPERDMPFEAYRIHGLSDEFLKDKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLN
HELSLLKRTEIKLLELANTIDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALK
DAALLAEVYVALTGGRQSTFKIVDRSIRINNLATHQVNNKTQQTTIVIKPTKEELQKH
KDFINKILTPA"
misc_feature complement(249434..250099)
/locus_tag="A1E_01105"
/note="DNA polymerase III, epsilon subunit,
Proteobacterial; Region: dnaQ_proteo; TIGR01406"
/db_xref="CDD:130473"
misc_feature complement(249593..250096)
/locus_tag="A1E_01105"
/note="DEDDh 3'-5' exonuclease domain of the epsilon
subunit of Escherichia coli DNA polymerase III and similar
proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131"
/db_xref="CDD:99835"
misc_feature complement(order(249629..249631,249644..249646,
249653..249655,249695..249700,249821..249829,
249833..249838,249932..249937,249944..249949,
250064..250069,250073..250084))
/locus_tag="A1E_01105"
/note="active site"
/db_xref="CDD:99835"
misc_feature complement(order(249629..249631,249644..249646,
249653..249655,249695..249700,249824..249829,
249833..249838,249932..249937,249944..249949,
250064..250069,250073..250084))
/locus_tag="A1E_01105"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99835"
misc_feature complement(order(249629..249631,249644..249646,
249821..249823,250076..250078,250082..250084))
/locus_tag="A1E_01105"
/note="catalytic site [active]"
/db_xref="CDD:99835"
gene complement(250099..250674)
/gene="coaE"
/locus_tag="A1E_01110"
/db_xref="GeneID:5625955"
CDS complement(250099..250674)
/gene="coaE"
/locus_tag="A1E_01110"
/note="catalyzes the phosphorylation of the 3'-hydroxyl
group of dephosphocoenzyme A to form coenzyme A; involved
in coenzyme A biosynthesis"
/codon_start=1
/transl_table=11
/product="dephospho-CoA kinase"
/protein_id="YP_001491952.1"
/db_xref="GI:157803403"
/db_xref="GeneID:5625955"
/translation="MLAIGITGNYASGKTFILDYLAEKGYKTFCADRCIKKLYQDLRV
QTQILKLLPELEYFNIRKISNLIYNNDLSREKLQNFIYPLLIDKLILFKKENATSKFG
FAEIPLLYEAKFDQYFDFVVTIYCSEEVRMQRAMTRSSFDIAIYNKIKEIQLPQESKI
AKADFSINSGVDMLDLEKQISNLIKKLECQV"
misc_feature complement(250102..250674)
/gene="coaE"
/locus_tag="A1E_01110"
/note="Dephospho-CoA kinase [Coenzyme metabolism]; Region:
CoaE; COG0237"
/db_xref="CDD:30586"
misc_feature complement(250150..250665)
/gene="coaE"
/locus_tag="A1E_01110"
/note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis; Region: DPCK; cd02022"
/db_xref="CDD:30195"
misc_feature complement(order(250216..250218,250351..250356,
250429..250431,250579..250581,250654..250656))
/gene="coaE"
/locus_tag="A1E_01110"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30195"
misc_feature complement(order(250168..250170,250273..250275,
250633..250638,250645..250653))
/gene="coaE"
/locus_tag="A1E_01110"
/note="ATP-binding [chemical binding]; other site"
/db_xref="CDD:30195"
gene complement(250668..251480)
/locus_tag="A1E_01115"
/db_xref="GeneID:5625956"
CDS complement(250668..251480)
/locus_tag="A1E_01115"
/note="COG3494 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491953.1"
/db_xref="GI:157803404"
/db_xref="GeneID:5625956"
/translation="MLPNLGIIAGRGSLPYLIAKNYTTQGGKCYITAIQGETDINQIK
NFEYKVFKIGMVGEAIKYFKENEVQNIIFIGGVNRPNFKNLAVDKIGGLLLFKILGQK
IRGDDSLLKTVADFFESYGFKVISSNKIYKNQQCDSNIITDTHPKSSDKNDIELGIKI
LNHLSPFDIAQSVIIESGYILGIEAAEGTDNLIARCADLRKNHHEGVLVKIPKLGQDT
RLDIPTIGPGTIQNLAKYNYCGIAIKAGEMIVVEQELTVKLANEHKIFIAKC"
misc_feature complement(250671..251480)
/locus_tag="A1E_01115"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3494"
/db_xref="CDD:33297"
gene 252225..252704
/gene="coaE"
/locus_tag="A1E_01120"
/db_xref="GeneID:5625957"
CDS 252225..252704
/gene="coaE"
/locus_tag="A1E_01120"
/EC_number="2.7.1.24"
/note="COG3814 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="dephospho-CoA kinase"
/protein_id="YP_001491954.1"
/db_xref="GI:157803405"
/db_xref="GeneID:5625957"
/translation="MNTEYKKFVNEYMLEFVKKILTKIQHENLYWDQLIYISYRTDNP
AVILPLKVKQAYPKQITIVLQYQFENLIVNDTGFSLTVSFYGVKEIIYVPFDALISFI
DSNNNYSLTFNQLLNVQEYHQHEKEIRNNKSCKTSLSPNPNVIMLDKFRNSSKPKPH"
misc_feature 252225..252683
/gene="coaE"
/locus_tag="A1E_01120"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3814"
/db_xref="CDD:33607"
gene 252709..253176
/gene="rnhA"
/locus_tag="A1E_01125"
/db_xref="GeneID:5625958"
CDS 252709..253176
/gene="rnhA"
/locus_tag="A1E_01125"
/EC_number="3.1.26.4"
/note="An endonuclease that specifically degrades the RNA
strand of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease H"
/protein_id="YP_001491955.1"
/db_xref="GI:157803406"
/db_xref="GeneID:5625958"
/translation="MNENISKVVIYTDGACAGNPGPGGWGALLQFNDTSKEILGYELD
TTNNRMEITAALEALRILKKSCNVEIYTDSKYLQQGITTWIHNWVKNNWCKSNNEAVK
NADLWQKLYAELSKHTIIWKWVKGHANNSGNIAADKLAAQGRQTAIEILKCRV"
misc_feature 252727..253143
/gene="rnhA"
/locus_tag="A1E_01125"
/note="RNase HI family found mainly in prokaryotes;
Region: RNase_HI_prokaryote_like; cd09278"
/db_xref="CDD:187702"
misc_feature order(252745..252756,252844..252852,252859..252861,
252925..252927,253075..253077,253129..253131)
/gene="rnhA"
/locus_tag="A1E_01125"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187702"
misc_feature order(252745..252747,252859..252861,252925..252927,
253117..253119)
/gene="rnhA"
/locus_tag="A1E_01125"
/note="active site"
/db_xref="CDD:187702"
gene 253164..253607
/locus_tag="A1E_01130"
/db_xref="GeneID:5625959"
CDS 253164..253607
/locus_tag="A1E_01130"
/note="COG3761 NADH:ubiquinone oxidoreductase 17.2 kD
subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491956.1"
/db_xref="GI:157803407"
/db_xref="GeneID:5625959"
/translation="MSCIDKFFITFFHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYN
NVNEPTKIAPSWHVWLHHLVNEIPKNIQLFPWQDNTHLAKFTYREEFKGDTECSTAAY
INIREDASTGSTYKLPLEVECAKMSNKIAKKPPKTSYLKYNRWQP"
misc_feature 253164..253604
/locus_tag="A1E_01130"
/note="hypothetical protein; Provisional; Region:
PRK06630"
/db_xref="CDD:168631"
gene 253629..254081
/locus_tag="A1E_01135"
/db_xref="GeneID:5625793"
CDS 253629..254081
/locus_tag="A1E_01135"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein"
/protein_id="YP_001491957.1"
/db_xref="GI:157803408"
/db_xref="GeneID:5625793"
/translation="MKQNVIETIIGFVVLIIVLLFLIFAYKTGYSITSSKGYQVTANF
QSAEGIAVGSDVMISGIKIGSIKKITLDPNSFYAIVYLNINDDVKIPKDSKAQVVTSG
LFGSKYISIVPGNDDENLAANEEIRYTQSAINIELLINKIVSSFGSKW"
misc_feature 253728..>254075
/locus_tag="A1E_01135"
/note="ABC-type transport system involved in resistance to
organic solvents, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: Ttg2C; COG1463"
/db_xref="CDD:31652"
misc_feature 253734..253970
/locus_tag="A1E_01135"
/note="mce related protein; Region: MCE; pfam02470"
/db_xref="CDD:111376"
gene complement(254695..254877)
/locus_tag="A1E_01140"
/db_xref="GeneID:5625794"
CDS complement(254695..254877)
/locus_tag="A1E_01140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491958.1"
/db_xref="GI:157803409"
/db_xref="GeneID:5625794"
/translation="MIDYSTLEMIKLYFKLRTAKSLSYYEELENDEKLSKLFRDSLNY
FIDNMAINYSKLSPIV"
gene 255361..255621
/locus_tag="A1E_01145"
/db_xref="GeneID:5625795"
CDS 255361..255621
/locus_tag="A1E_01145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491959.1"
/db_xref="GI:157803410"
/db_xref="GeneID:5625795"
/translation="MSIHILILKTALSYDKLIFAKISVVRVTWRETQDIISRDMSRGI
DLFKKIYAVSIYVGLTSSAGEEGCFNVRFVTLEEAGKLKHRK"
misc_feature complement(257158..257229)
/note="similar to hypothetical protein"
gene complement(257257..257397)
/locus_tag="A1E_01155"
/db_xref="GeneID:5625797"
CDS complement(257257..257397)
/locus_tag="A1E_01155"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491961.1"
/db_xref="GI:157803412"
/db_xref="GeneID:5625797"
/translation="MKNKEKEILTSALIVDEEEEKLLKAQNAREDLKLILIHLLLFLL
VF"
gene 258853..259002
/locus_tag="A1E_01160"
/db_xref="GeneID:5626563"
CDS 258853..259002
/locus_tag="A1E_01160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491962.1"
/db_xref="GI:157803413"
/db_xref="GeneID:5626563"
/translation="MSKKTKHTNGAIGTVIKDFLPHPKELLLKDDSVKVTIWLSKESI
EFFKG"
gene complement(259101..259192)
/locus_tag="A1E_t05694"
/db_xref="GeneID:5626564"
tRNA complement(259101..259192)
/locus_tag="A1E_t05694"
/product="tRNA-Ser"
/db_xref="GeneID:5626564"
gene complement(259271..259483)
/locus_tag="A1E_01165"
/db_xref="GeneID:5626565"
CDS complement(259271..259483)
/locus_tag="A1E_01165"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491963.1"
/db_xref="GI:157803414"
/db_xref="GeneID:5626565"
/translation="MIDKYKDDMDSICHITTQLVNICENTTEPKVIEYFIDYLEPWQE
LPIHWYYNTMLPMAKVSSKLLNYDYK"
gene complement(260074..260217)
/locus_tag="A1E_01170"
/db_xref="GeneID:5626566"
CDS complement(260074..260217)
/locus_tag="A1E_01170"
/note="COG1463 ABC-type transport system involved in
resistance to organic solvents, periplasmic component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491964.1"
/db_xref="GI:157803415"
/db_xref="GeneID:5626566"
/translation="MLRNNLKDISNPEIYIIANYEEPIIKNYTITDKIVKGKVYYLER
LKY"
gene complement(260563..261450)
/locus_tag="A1E_01175"
/db_xref="GeneID:5626169"
CDS complement(260563..261450)
/locus_tag="A1E_01175"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491965.1"
/db_xref="GI:157803416"
/db_xref="GeneID:5626169"
/translation="MGRDFYNNFKPAKETFQTIDEALNRKLTDIIFNSTPEELTLTTN
AQPALMAVSMAIINTIKAETGKSLDSLCDYAAGHSLGEYSALCAAESISLIDTAKLLH
VRSTSMQEACPEGEGSMAACINIPLQKLEQILEDINKINLCQIANDNIEGQIVISGKV
DAIDYAISIIKDLGYKAIKLKVSAPFHCSLMKLAEHKMQLALDKTVINKPIIPVIQNY
TAKPTTNPLEIKQNLILQICGRVRWRETLELFNTLEITHIVEIGAGNVLTNMLRKSDY
PFKLSNISELQHFLDNVHK"
misc_feature complement(260575..261450)
/locus_tag="A1E_01175"
/note="(acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism]; Region: FabD; COG0331"
/db_xref="CDD:30679"
misc_feature complement(260632..261450)
/locus_tag="A1E_01175"
/note="malonyl CoA-acyl carrier protein transacylase;
Region: fabD; TIGR00128"
/db_xref="CDD:199994"
gene 261693..261899
/locus_tag="A1E_01180"
/db_xref="GeneID:5626170"
CDS 261693..261899
/locus_tag="A1E_01180"
/note="COG0331 (acyl-carrier-protein)
S-malonyltransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491966.1"
/db_xref="GI:157803417"
/db_xref="GeneID:5626170"
/translation="MKLGDYCTELEDIACGPYLTAFKKLFSKLLYSGRNKEKEIYLDI
YKEVIDQIQASIKIIELNKLHSKS"
gene 263214..265898
/locus_tag="A1E_01185"
/db_xref="GeneID:5626171"
CDS 263214..265898
/locus_tag="A1E_01185"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_001491967.1"
/db_xref="GI:157803418"
/db_xref="GeneID:5626171"
/translation="MTDKYSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKP
VHRRIIYSMYEAGNHASKPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLP
LVDGQGNFGSMDGDAAAAMRYTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVL
PAMFPNLLVNGSGGIAVGMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDF
PTGSMILGISGIRSAYLTGRGSIIMRGRAEIENIGNSRQAIIITEIPYMVNKARLVEK
IAEMVKEKRIEGISDLRDESNKNGVRIFIELKKDVEAEVVLNQIYACTQLQTSFGVIM
LALKDGLPKVMNLKEVIAAFVSFREVVITNRTVYLLNKARDKAHILLGLTIAVSNIDE
IIRIIKASNDPNTAKQEVMARKWNALNILPLVKLVDDKAMLNEHGKCSFTEVQAKAVL
EMRLQRLTAMEKNKLEEDLKTLATEISEYLNILGSRERLLKILKEELIKVKEEFATPR
LTSIEFGEFDKDIEDLIQREEMVVTVTLGGYIKRVPLSSYRSQKRGGKGRSGLSMRDE
DMTTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKGRPMVNILPLKENEHITN
IMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPC
KEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAGDDSVISMTVLKGISSTK
EDRDAYLSVSWEQRLEIAKGKSFNPEELGVSLTLDSILEMANSEEFILTVTENGFGKR
SSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNNGKLIRCKLESVR
ITGRNTSGVILFKLDDGEKVVSVSLIADTSASEEDNEL"
misc_feature 263232..265868
/locus_tag="A1E_01185"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 263304..264677
/locus_tag="A1E_01185"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(263304..263387,263400..263549,263553..263609,
263613..263684,263691..263693)
/locus_tag="A1E_01185"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 263580..263582
/locus_tag="A1E_01185"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(264375..264383,264390..264401,264432..264437,
264552..264602)
/locus_tag="A1E_01185"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 264957..265094
/locus_tag="A1E_01185"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 265128..265262
/locus_tag="A1E_01185"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 265269..265415
/locus_tag="A1E_01185"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 265566..265712
/locus_tag="A1E_01185"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 265719..265859
/locus_tag="A1E_01185"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene 266245..266418
/locus_tag="A1E_01190"
/db_xref="GeneID:5626172"
CDS 266245..266418
/locus_tag="A1E_01190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491968.1"
/db_xref="GI:157803419"
/db_xref="GeneID:5626172"
/translation="MIWLLIVISLTLTVLVIGVVLMAVGGKFDKKFSSKLMTLRVFFQ
AVAIFLLIIIYFL"
gene complement(266693..266797)
/locus_tag="A1E_01195"
/db_xref="GeneID:5626173"
CDS complement(266693..266797)
/locus_tag="A1E_01195"
/note="COG0188 Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491969.1"
/db_xref="GI:157803420"
/db_xref="GeneID:5626173"
/translation="MHLGDIEEITAQLKEYSSDQYNEKNFIIEARETD"
gene 266962..267489
/gene="def"
/locus_tag="A1E_01200"
/db_xref="GeneID:5626146"
CDS 266962..267489
/gene="def"
/locus_tag="A1E_01200"
/EC_number="3.5.1.88"
/note="cleaves off formyl group from N-terminal methionine
residues of newly synthesized proteins; binds iron(2+)"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="YP_001491970.1"
/db_xref="GI:157803421"
/db_xref="GeneID:5626146"
/translation="MSILPIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDA
AGLAAVQVGILKRILVIDIKDHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISV
PRQRVEVARPESIKIKYLDYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKR
DVVLRKLKKLKNNIV"
misc_feature 266977..267411
/gene="def"
/locus_tag="A1E_01200"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:29602"
misc_feature order(267091..267099,267112..267114,267253..267261,
267382..267387,267394..267396)
/gene="def"
/locus_tag="A1E_01200"
/note="active site"
/db_xref="CDD:29602"
misc_feature order(267097..267099,267112..267114,267259..267261,
267385..267387)
/gene="def"
/locus_tag="A1E_01200"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
misc_feature order(267256..267258,267382..267384,267394..267396)
/gene="def"
/locus_tag="A1E_01200"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
gene 267486..268397
/gene="fmt"
/locus_tag="A1E_01205"
/db_xref="GeneID:5626147"
CDS 267486..268397
/gene="fmt"
/locus_tag="A1E_01205"
/note="modifies the free amino group of the aminoacyl
moiety of methionyl-tRNA(fMet) which is important in
translation initiation; inactivation of this gene in
Escherichia coli severely impairs growth"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_001491971.1"
/db_xref="GI:157803422"
/db_xref="GeneID:5626147"
/translation="MKVIFMGTPEFAVPTLKKLIAHHEVTAVFTQQPKAKGRGLSLAQ
SPIHQLACEHQIPVYTPSTLRNDKTINLINKVNADIIVVIAYGFIVPKAILDAKKYGC
LNIHPSDLPRHRGAAPLQRTIIEGDKTSSVCIMRMDTGLDTGDILMKEDFDLEERTTL
KELHNKCANLGAELLINTLVNIDNIVPIKQSSDGITYAHKLTKQEGKINWQDSAYSID
CKIRGMNPWPGVYFSYDDKIIKILEAEYLNVDHHFTPGTVISDKLEIACGSGILQVKK
LQQESKKALNIEEFLLGTRILKATVLK"
misc_feature 267486..268394
/gene="fmt"
/locus_tag="A1E_01205"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:178787"
misc_feature 267486..268088
/gene="fmt"
/locus_tag="A1E_01205"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature order(267504..267506,267516..267521,267732..267755,
267768..267770,267795..267806,267828..267830,
267888..267890,267894..267899,267906..267911)
/gene="fmt"
/locus_tag="A1E_01205"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature order(267507..267512,267516..267518,267576..267578,
267588..267590,267594..267605,267735..267746,
267795..267797,267801..267806,267828..267836,
268083..268085)
/gene="fmt"
/locus_tag="A1E_01205"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature order(267732..267734,267741..267743,267747..267755,
267768..267770,267795..267797,267894..267899,
267906..267911)
/gene="fmt"
/locus_tag="A1E_01205"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature order(267795..267797,267801..267803,267909..267911)
/gene="fmt"
/locus_tag="A1E_01205"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature 268095..268346
/gene="fmt"
/locus_tag="A1E_01205"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature order(268164..268166,268197..268199,268203..268205,
268317..268319,268323..268325,268329..268334,
268338..268340)
/gene="fmt"
/locus_tag="A1E_01205"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene 268733..268897
/locus_tag="A1E_01210"
/db_xref="GeneID:5626148"
CDS 268733..268897
/locus_tag="A1E_01210"
/note="COG0223 Methionyl-tRNA formyltransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491972.1"
/db_xref="GI:157803423"
/db_xref="GeneID:5626148"
/translation="MVNISNGFEIDENILFRKDNKLLFITTQNSLITRGDEIKAEIIF
YKKAGSFLKL"
gene 269229..272011
/locus_tag="A1E_r01"
/db_xref="GeneID:5696489"
rRNA 269229..272011
/locus_tag="A1E_r01"
/product="23S ribosomal RNA"
/db_xref="GeneID:5696489"
gene 272249..272367
/locus_tag="A1E_r05748"
/db_xref="GeneID:5626149"
rRNA 272249..272367
/locus_tag="A1E_r05748"
/product="5S ribosomal RNA"
/db_xref="GeneID:5626149"
gene complement(273032..274213)
/gene="fmt"
/locus_tag="A1E_01215"
/db_xref="GeneID:5626150"
CDS complement(273032..274213)
/gene="fmt"
/locus_tag="A1E_01215"
/EC_number="2.1.2.9"
/note="COG1485 Predicted ATPase"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_001491973.1"
/db_xref="GI:157803424"
/db_xref="GeneID:5626150"
/translation="MTIPLDVKQIALSKELTEIALELNKPRTLLQIFSKNNLKSGIYL
YGPVGSGKTMLMNSFFEELTASKIIIHYQNFMQEIHKIMHKLQTENQKDIILKIAKDY
AKNTRVLCIDEFEIKDITDAMIIGRLFDKLIKQNIFIFITSNTSPNNLYKNGLQRESF
LPCIKIINNTFYVKYLDNHHDYRFDKALGVKGERIIYPLTLENQKKLEKIITDISDNR
VLSKLTYREEFIGDTEYSTTAIPVHEDTSSELTYKLPLEGECAKNSTNFTPQNIEVLG
RKISFQKVHKRILVTDYNELFTRDLSYIDYVNICQNFNVIIVQNVHTIDANDTNTVVR
FINFIDNAYFYKILLFMSLEDDPNKIYQGSNRSEEFKRTISRLNEMNSAAYLLNNNLR
N"
misc_feature complement(273050..274198)
/gene="fmt"
/locus_tag="A1E_01215"
/note="Predicted ATPase [General function prediction
only]; Region: COG1485"
/db_xref="CDD:31674"
misc_feature complement(273773..274135)
/gene="fmt"
/locus_tag="A1E_01215"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(274055..274078)
/gene="fmt"
/locus_tag="A1E_01215"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(273785..273787,273878..273880,
274052..274075))
/gene="fmt"
/locus_tag="A1E_01215"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(273875..273892)
/gene="fmt"
/locus_tag="A1E_01215"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(273428..273562)
/gene="fmt"
/locus_tag="A1E_01215"
/note="Rickettsial palindromic element RPE1 domain;
Region: RPE1; TIGR01045"
/db_xref="CDD:162172"
gene complement(274733..275893)
/locus_tag="A1E_01220"
/db_xref="GeneID:5626359"
CDS complement(274733..275893)
/locus_tag="A1E_01220"
/note="COG0809
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
(queuine synthetase)"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase"
/protein_id="YP_001491974.1"
/db_xref="GI:157803425"
/db_xref="GeneID:5626359"
/translation="MKLSDFDFDLPSELIAQYPSSKRDHSDLLIAATPPIKTKFYNII
DYLKEGDLLVFNNSKVIKAKLNLEKNRPLSKLAYRDKFEGDMECRTAVYTNVREDSST
GSTYKLPLEVELEKRSNITINLNQRLSNNCWSAFAKPARRLNIGDEFHFDNHKVIIVE
KLAIGEIKVKFELDDISVFEFLDKYGEMPLPLYIRHHEAQKSNNERYQNIYSSIEGSV
AAPTAGLHFTNDILNKLKAKNIQTTFLTLHVGAGTFLPVKTENIHEHKMHTEYCSITP
DTARLINKAKQEKQRIIAVGTTTLRTLESSCNNGTVKACDFETDIFITPGFKFQTADI
LLTNFHFPKSTLFMLICAFAGFKEMHKLYKYAIKEKMRFFSYGDATLLYRKI"
misc_feature complement(274736..275893)
/locus_tag="A1E_01220"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region:
PRK01424"
/db_xref="CDD:134556"
misc_feature complement(274745..275893)
/locus_tag="A1E_01220"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region: queA;
PRK00147"
/db_xref="CDD:178900"
gene complement(276529..278298)
/locus_tag="A1E_01225"
/db_xref="GeneID:5626360"
CDS complement(276529..278298)
/locus_tag="A1E_01225"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter ATP-binding protein"
/protein_id="YP_001491975.1"
/db_xref="GI:157803426"
/db_xref="GeneID:5626360"
/translation="MIKYPTLSKSTFSLGIYFLKFDKVKITLLTVICILLGMIPAIDS
ILLQKIIDLIESFRDKNTHNFLSSMIYWAVFYALWWESINIAYRSYDYLYLKTMPVIK
GTILNELYNYTQYHSHKFFQDNLAGHISNRITETARSFEMIISIFGEKILRKLAIIVF
ALIALYSVHYVFTTIFILWITVFLGLSVLFSDRINKYSLNYARSQSFVAGSIVDAISN
INAVRMFTAHKFERQHLETRVENAIADEQTMQFFMFKLRYALGTSCSIMIFIMIYYLS
VLRSELSITIGDCVLVLTLCINVADDIWDLTQEIGDVFEQIGAFNQGLSLMAPHIITD
IENATPLDIKEGVIEFRNVTFNYHHNNNLFYNKSVLIPSKQKVGLVGFSGSGKTTFIS
LLTRLHDITEGMILIDNQNIKNVTQDSLRKAISLIPQEPVLFHRTILENIRYGTKEAT
IEEVIEAAKSAHIHDVINNLPDGYDTMCGERGNNLSGGQRQRIIIARAILKNAPILIL
DEATSSLDSETESLIQESMEYLMQNKTVIVIAHRLSTLLNMDRILVFEKGSIIDDGSH
AELLKNSKLYQKLWNSQVKGLIV"
misc_feature complement(276550..278247)
/locus_tag="A1E_01225"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(277414..278217)
/locus_tag="A1E_01225"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature complement(276550..277257)
/locus_tag="A1E_01225"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(277135..277158)
/locus_tag="A1E_01225"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(276676..276678,276769..276774,
277012..277014,277132..277140,277144..277149))
/locus_tag="A1E_01225"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(277012..277023)
/locus_tag="A1E_01225"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(276817..276846)
/locus_tag="A1E_01225"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(276769..276786)
/locus_tag="A1E_01225"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(276751..276762)
/locus_tag="A1E_01225"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(276670..276690)
/locus_tag="A1E_01225"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 278483..278755
/locus_tag="A1E_01230"
/db_xref="GeneID:5626361"
CDS 278483..278755
/locus_tag="A1E_01230"
/note="COG1132 ABC-type multidrug transport system, ATPase
and permease components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491976.1"
/db_xref="GI:157803427"
/db_xref="GeneID:5626361"
/translation="MQEQELSSNFLEEQEKSKEDPSPFFDVKYICQASLLITDSIQKG
YDVTQLPNGDVNVTEVRIVNVHYNWNSEKGKFVKTNQIEFNNSKSV"
misc_feature 278483..278746
/locus_tag="A1E_01230"
/note="Protein of unknown function (DUF2671); Region:
DUF2671; pfam10877"
/db_xref="CDD:151326"
gene 278927..280291
/locus_tag="A1E_01235"
/db_xref="GeneID:5626362"
CDS 278927..280291
/locus_tag="A1E_01235"
/note="COG1271 Cytochrome bd-type quinol oxidase, subunit
1"
/codon_start=1
/transl_table=11
/product="cytochrome d ubiquinol oxidase subunit I"
/protein_id="YP_001491977.1"
/db_xref="GI:157803428"
/db_xref="GeneID:5626362"
/translation="MEFDQVLLSRIQFAFTISFHVIFPAFTIGLASFLVVIEGLWLNT
KKQVYKEIYKFWMKIFAVTFGMGVVSGVVMSYQFGTNWSNFSDKVGNVLGPLLGFEVF
TAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAIGTVISAFWILAASSWMHTPAGFEL
QGKWFFYPLNWLEIIFNPSFPYRFFHMITAAYLTTSFVIGGVGSFYLLNNRYKEHAKI
MLFMAVLMALIVAPIQIFIGDLHGLNTLKYQPVKVAAIEGIWNTEKGAALNLIGFPDE
EEEKTKYAIEIPYASSLILTHSLEGEVKGLKEWTQEERPPVAVVFFSFRIMVGIGFLM
VFTGVAGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILK
TMDTVSPVLGKYVFISLIAFIVVYALIFGAGIYYIMHLIKKGIEAIDNKEMYGEISLN
NPLL"
misc_feature 278948..280237
/locus_tag="A1E_01235"
/note="Bacterial Cytochrome Ubiquinol Oxidase; Region:
Bac_Ubq_Cox; pfam01654"
/db_xref="CDD:201906"
gene 280975..281994
/locus_tag="A1E_01240"
/db_xref="GeneID:5626363"
CDS 280975..281994
/locus_tag="A1E_01240"
/note="COG1294 Cytochrome bd-type quinol oxidase, subunit
2"
/codon_start=1
/transl_table=11
/product="cytochrome d ubiquinol oxidase subunit II"
/protein_id="YP_001491978.1"
/db_xref="GI:157803429"
/db_xref="GeneID:5626363"
/translation="MLNFASYIDLPLVWGGLIATAICLYVLLDGFDLGIGILFPFAPT
DDCRHKMINSIAPFWDGNETWLVLGGGGLFAVFPLAYSLLMPALYIPITFMLLGLIFR
GVAFEFRFKAHIGHRYIWDYAFHFGSMLAVFCQGLMLGTFVQGIEVEGREFAGGSFDF
LTPFSVMTGIALMFGYALLGATWLILKTEKKTQDWAYKSALYILFYVALFMGLVSLWV
PFLNNHINHRWFSVPNIYYLSIVPIVTALIFIKLIKAIKQKKEVKPFIYTTLLFLLGY
LGLAISIWPYIVPYKVTLETAAAAPESQSLLLIGAGIFLPIILSYTFYCYYIFRGKSS
HHPIY"
misc_feature 280999..281964
/locus_tag="A1E_01240"
/note="Cytochrome oxidase subunit II; Region: Cyto_ox_2;
pfam02322"
/db_xref="CDD:190279"
misc_feature 281107..281988
/locus_tag="A1E_01240"
/note="cytochrome d ubiquinol oxidase subunit 2;
Provisional; Region: PRK15003; cl12219"
/db_xref="CDD:187194"
gene 282300..283106
/locus_tag="A1E_01245"
/db_xref="GeneID:5626664"
CDS 282300..283106
/locus_tag="A1E_01245"
/note="COG0463 Glycosyltransferases involved in cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="Beta 1,4 glucosyltransferase"
/protein_id="YP_001491979.1"
/db_xref="GI:157803430"
/db_xref="GeneID:5626664"
/translation="MTKISAFIITKNEAARIARAINSVKNIVDEVVVVDSESSDGTVS
IAEELGATVVIKPWLGYVGQKSFAESLCIHDWILNIDADEELSKDLQDEIEYIFVSGN
QDHYLAYKIKLLIMHRDDRKPRMFAPFNKCIRLYNKKFASFANNVNSTTHDSVVFNKD
VDFTNKVYLLNEPAYHYSGISIEQLVTKANFYSSEQAKDLMVQDKKVSNIRIATEMLW
WFLKAFFIRRYFVFGFDGFVDSMIFAFARFLRLAKLRDKTKNNYERKFSR"
misc_feature 282300..283070
/locus_tag="A1E_01245"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:30811"
misc_feature 282306..283019
/locus_tag="A1E_01245"
/note="UDP-glucose LOS-beta-1,4 glucosyltransferase is
required for biosynthesis of lipooligosaccharide; Region:
Beta4Glucosyltransferase; cd02511"
/db_xref="CDD:133005"
misc_feature order(282540..282542,282546..282548)
/locus_tag="A1E_01245"
/note="putative metal binding site; other site"
/db_xref="CDD:133005"
gene 283084..284325
/locus_tag="A1E_01250"
/db_xref="GeneID:5626665"
CDS 283084..284325
/locus_tag="A1E_01250"
/note="COG0612 Predicted Zn-dependent peptidases"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase"
/protein_id="YP_001491980.1"
/db_xref="GI:157803431"
/db_xref="GeneID:5626665"
/translation="MKENFHVSTLKNGLTILTYNMPYVNSVAINLIVKVGSRYENPEE
EGISHFLEHMAFKGTKTRTAKQIAEEFDEIGGHFNAYTGHEKTVYYARVLSENCNKAL
NILADIIQNSIFSEEDIVKEYQVILQEIAHSQDNPDDLIYEKFYSSVYKDQPLGKSIL
GTSKTLASFTKEHFLSFIDKHYNARNLYLSVAGNVDHNKIVCTAEQLFSSLKQGIKSS
FLPAKYIGGNSFIKKDLAQTTLILGFEGTPYINLERLYRTQLFAIIFGGGMSSRLFQH
IRERLGLAYAVGSYNSTYIDSGVFTIYASTAHDKLELLCKELKNEITKMTEKVNEEEM
IRAKTQLRSNLLMAQEKVAYKSEEIGKHYAAFGKYISPEEIMEIITNIKADDIINTAN
KIFSGTTTSAIIGPSILYYEF"
misc_feature 283084..284301
/locus_tag="A1E_01250"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature 283129..283569
/locus_tag="A1E_01250"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature 283585..284106
/locus_tag="A1E_01250"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene 284335..285045
/locus_tag="A1E_01255"
/db_xref="GeneID:5626666"
CDS 284335..285045
/locus_tag="A1E_01255"
/note="catalyzes the formation of
(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-
carboxamido)succinate from
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and
L-aspartate in purine biosynthesis; SAICAR synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole-succinocarboxamide
synthase"
/protein_id="YP_001491981.1"
/db_xref="GI:157803432"
/db_xref="GeneID:5626666"
/translation="MKKKLYEGSSKILYSAEEDFLLIMAFSDKAILETGKTVDISGKG
VLNNNISSFLMDKLEMIGIANHFIEKINMREQLIQYVEVFPIQVIISSVACGRFVKEF
GLDEGYVFDKPIMDFKVRSREFKYPIVNEYQILNFGWLTRDEITAVKEQALHIYDFLS
GLFIGVGIRLVECKLEFGRVFNGEESIIMLTDEISPDNCRLWHINSNEKLGFELLENE
PSKVFESYQLIAERLKEK"
misc_feature 284335..285042
/locus_tag="A1E_01255"
/note="phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed; Region: PRK09362"
/db_xref="CDD:181800"
misc_feature 284344..285039
/locus_tag="A1E_01255"
/note="bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
(SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415"
/db_xref="CDD:133470"
misc_feature order(284347..284352,284356..284361,284365..284367,
284371..284376,284398..284400,284404..284406,
284530..284532,284569..284571,284575..284577,
284581..284583,284692..284694,284860..284862,
284905..284910)
/locus_tag="A1E_01255"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133470"
misc_feature order(284350..284352,284356..284367,284371..284373,
284398..284400,284434..284436,284533..284535,
284566..284577,284581..284583,284593..284595,
284599..284601,284605..284607,284617..284625,
284686..284688,284692..284694,284710..284712,
284848..284856,284860..284862,284908..284910,
284923..284934)
/locus_tag="A1E_01255"
/note="active site"
/db_xref="CDD:133470"
misc_feature order(284434..284436,284593..284595,284599..284601,
284605..284607,284617..284625,284686..284688,
284710..284712,284848..284856,284923..284934)
/locus_tag="A1E_01255"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133470"
gene 285235..286830
/locus_tag="A1E_01260"
/db_xref="GeneID:5626667"
CDS 285235..286830
/locus_tag="A1E_01260"
/EC_number="6.3.2.6"
/note="COG0152
Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR)
synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole-succinocarboxamide
synthase"
/protein_id="YP_001491982.1"
/db_xref="GI:157803433"
/db_xref="GeneID:5626667"
/translation="MKIRFIIISFLVLILVGWGYAAYKFASQSKENIISILDKYEEYI
TYDSIKVNKYSFSVTLNKVMLKPIDFYYDEIVIRHVPFLNITKIDSYGNNVKITTAKD
GENIFYSPDHHTTIWFRKSLFNRLPDYWKLSMSDRKSTLYSARDAEKLAESISNSVIT
NTKTSDNLNLLTLDGKTVVSFISENYSKNLSDKVFKFLRDKIGEEAPFDSFEYDVGYL
DVLDVPTTYKGQLKLKYSNELVALGKLLIQNFSLDQKQDENVHAIFMQILGELVKGKP
FLFACDIERKGKVKSNLYKLNVEKNKIFDFALNIKSTIEPSEIYQKTAVEALGRYFSN
GLNKRAELDKVFKLSSPITQEDGEKIMAVFAKINNVKFNLKGEFDPEEKKLSGKTNLV
MDDFNFAIDIDMPNLDNPLNLESVIKLSDPNAFINNFVHYTNNAIIPVLNKIEDSKEF
ALNLGKQSSVIEQYGFRVIEAFSKNSELQDGESLIVDIKGKDDGLTINDKTIDQIFSD
ARVLEFINAMAQIDQERKQVVGK"
gene 287042..288949
/gene="thrS"
/locus_tag="A1E_01265"
/db_xref="GeneID:5626668"
CDS 287042..288949
/gene="thrS"
/locus_tag="A1E_01265"
/note="catalyzes a two-step reaction, first charging a
threonine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; catalyzes the formation
of threonyl-tRNA(Thr) from threonine and tRNA(Thr)"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_001491983.1"
/db_xref="GI:157803434"
/db_xref="GeneID:5626668"
/translation="MINISLSDGSVRQFEKGMTIYEVANAISMSLAKQAIVAEINGEL
KDLSTVIENNCKLRILTAKDPECLEIIRHDAAHLTAEAVKELFPETQVTIGPAIENGY
YYDFARDKPFTVDDLAVIEAKMQELAKKNEKVTRELWNRDKAIEFFRSIGEHYKAEII
ASIPTDEPITLYRQGNFIDLCRGPHAPSTGFVKYFKLMKVAGSYWRGDSRNQVLQRIY
GTAWATKEQLDHYLFMLEEAEKRDHRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNIV
EQYIRKKIRKNGYTEVKTPVLVDKRLWEASGHWEKFRDNMFALEADNKILALKPMNCP
CHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQI
TDETVSFCKLLTEVYKDFGFTDIKVKFSDRPEIRAGSDEVWDKAENALKEAVEKAGFT
YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLLEQLDASYVAASGEKKRPVM
LHRAILGSLERFIGILIEEYAGCFPLWLAPVQVAIATITSDLNDYALAVQKALIDNGV
RTDINISPDKINYKIREFSNHKVPLIAIIGKKEKENKQVTIRRLGTTDQQVLSVKQLI
TLISEENSKYL"
misc_feature 287042..288943
/gene="thrS"
/locus_tag="A1E_01265"
/note="threonyl-tRNA synthetase; Reviewed; Region: thrS;
PRK00413"
/db_xref="CDD:179011"
misc_feature 287045..287227
/gene="thrS"
/locus_tag="A1E_01265"
/note="TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is
a class II tRNA synthetase that couples threonine to its
cognate tRNA. In addition to its catalytic and
anticodon-binding domains, ThrRS has an N-terminal TGS
domain, named after the ThrRS, GTPase, and...; Region:
TGS_ThrRS_N; cd01667"
/db_xref="CDD:133437"
misc_feature 287546..287692
/gene="thrS"
/locus_tag="A1E_01265"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; smart00863"
/db_xref="CDD:197931"
misc_feature 287762..288655
/gene="thrS"
/locus_tag="A1E_01265"
/note="Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is responsible
for the attachment of threonine to the 3' OH group of
ribose of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ThrRS_core;
cd00771"
/db_xref="CDD:29816"
misc_feature order(287771..287773,287810..287812,287963..287965,
287975..287977,287984..287989,288029..288031,
288125..288127,288131..288133,288137..288145,
288158..288166,288173..288175,288179..288181,
288464..288466,288473..288478,288488..288490,
288584..288589,288596..288598)
/gene="thrS"
/locus_tag="A1E_01265"
/note="active site"
/db_xref="CDD:29816"
misc_feature order(287783..287785,287801..287803,287807..287815,
287819..287821,287825..287827,287831..287836,
287840..287842,287849..287851,287894..287899,
287909..287914,287918..287920,287924..287932,
287936..287938,287990..287998,288002..288013,
288017..288019,288053..288058,288065..288073,
288077..288085,288122..288124,288128..288130,
288137..288139,288167..288172,288251..288253,
288377..288385,288530..288532,288536..288538)
/gene="thrS"
/locus_tag="A1E_01265"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29816"
misc_feature 287909..287932
/gene="thrS"
/locus_tag="A1E_01265"
/note="motif 1; other site"
/db_xref="CDD:29816"
misc_feature 288122..288133
/gene="thrS"
/locus_tag="A1E_01265"
/note="motif 2; other site"
/db_xref="CDD:29816"
misc_feature 288584..288598
/gene="thrS"
/locus_tag="A1E_01265"
/note="motif 3; other site"
/db_xref="CDD:29816"
misc_feature 288653..288922
/gene="thrS"
/locus_tag="A1E_01265"
/note="ThrRS Threonyl-anticodon binding domain. ThrRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
ThrRS_anticodon; cd00860"
/db_xref="CDD:29800"
misc_feature order(288677..288682,288785..288787,288803..288805,
288827..288829,288857..288859,288863..288865)
/gene="thrS"
/locus_tag="A1E_01265"
/note="anticodon binding site; other site"
/db_xref="CDD:29800"
gene 289923..290054
/locus_tag="A1E_01270"
/db_xref="GeneID:5626669"
CDS 289923..290054
/locus_tag="A1E_01270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491984.1"
/db_xref="GI:157803435"
/db_xref="GeneID:5626669"
/translation="MQISQDNIDKENLAELKISKGKEISFAYKEGSKWLLYGVFRRW"
gene complement(290550..290768)
/locus_tag="A1E_01275"
/db_xref="GeneID:5626481"
CDS complement(290550..290768)
/locus_tag="A1E_01275"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491985.1"
/db_xref="GI:157803436"
/db_xref="GeneID:5626481"
/translation="MIKILILKKILLLGKMIMQRLTTYSFQAIKLEPLMETQLSKEGR
KISKQIQKCLKKKVFYSRTGIRKLICTF"
misc_feature complement(<290589..>290687)
/locus_tag="A1E_01275"
/note="Zn-ribbon-containing, possibly nucleic-acid-binding
protein (DUF2310); Region: DUF2310; cl02380"
/db_xref="CDD:154884"
gene complement(291489..291902)
/locus_tag="A1E_01280"
/db_xref="GeneID:5626482"
CDS complement(291489..291902)
/locus_tag="A1E_01280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491986.1"
/db_xref="GI:157803437"
/db_xref="GeneID:5626482"
/translation="MSNSHIHILITIGCLALIVIFLMYKKIAARKKNILPTKGSNVDN
TKNVALNSKKPKNKKLTLQERIELSWKFLYDITEIILNKFSKEDVIQVNKCGQILLEN
GVRYEHVVDLAIPQAKSHTQTVEQEQSKGKKALGV"
misc_feature complement(291579..291839)
/locus_tag="A1E_01280"
/note="Protein of unknown function (DUF2660); Region:
DUF2660; pfam10859"
/db_xref="CDD:151308"
gene complement(292204..292371)
/locus_tag="A1E_01285"
/db_xref="GeneID:5626483"
CDS complement(292204..292371)
/locus_tag="A1E_01285"
/note="COG0441 Threonyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491987.1"
/db_xref="GI:157803438"
/db_xref="GeneID:5626483"
/translation="MLNIYQKVKDKVEENIVELKSNIKIAMPKDINIDKLNPVKNTII
NIISMKLKQNY"
gene 293262..293462
/locus_tag="A1E_01290"
/db_xref="GeneID:5626484"
CDS 293262..293462
/locus_tag="A1E_01290"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001491988.1"
/db_xref="GI:157803439"
/db_xref="GeneID:5626484"
/translation="MREIIAVVVEELNVKIENGVISSDHIHIFANIPPHIKVSEFVQK
AKGRSSKKNTRRISNIKKKVLG"
misc_feature <293262..>293459
/locus_tag="A1E_01290"
/note="Transposase IS200 like; Region: Y1_Tnp; pfam01797"
/db_xref="CDD:201979"
gene 293377..293595
/locus_tag="A1E_01295"
/db_xref="GeneID:5626485"
CDS 293377..293595
/locus_tag="A1E_01295"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001491989.1"
/db_xref="GI:157803440"
/db_xref="GeneID:5626485"
/translation="MNLCKKPKGDHQKKIQEEFPILRKKYWGRHLWVVREYFSATSGN
VTDDMINEYINRHTDAHEPVMTTNIRLE"
misc_feature <293398..293547
/locus_tag="A1E_01295"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene 293909..295273
/locus_tag="A1E_01300"
/db_xref="GeneID:5626675"
CDS 293909..295273
/locus_tag="A1E_01300"
/codon_start=1
/transl_table=11
/product="outer membrane protein tolC precursor"
/protein_id="YP_001491990.1"
/db_xref="GI:157803441"
/db_xref="GeneID:5626675"
/translation="MRKLTTFIVILLLTSSATSVDLQEALTEGYKNNEELKAARIKFL
NSIESFPRAFAEFMPSAGLQINRNNTKNKYNKKYADRLGLILRETDSDQGAFTIEQSL
FNGGSSVAALKAAQAGFRASRGEYYAGEQKVLFNLITVYLDCFESKEKYDISESRVRT
NIQQVNTVEEKLRLGEATAIDIATARAGLAAAETNKLAAYADFQGKKANFIRVFGIAP
TNITMPDLPKMLPASLDELTKKAAKLNPDIDSARHNVTSAKASEMAAKGKLLPQVSVK
LQSGRTHYNPQDPVVQNINTKSVTTTLSVNIPIYPEGGAQYSRIRSAQNQTRNSAVQL
DSAIKQTQAWVVSVWEGFEAAKSRIVAANQGVDAAQISYDGTVQEEIVGSKTILDVLT
AEEKLYEAKITRVDAYKSLVLAAYHMKLLTGELTAQNLKLKVKYFSPEEEFKTIKKKM
FIGF"
misc_feature 293972..295219
/locus_tag="A1E_01300"
/note="Outer membrane protein [Cell envelope biogenesis,
outer membrane / Intracellular trafficking and secretion];
Region: TolC; COG1538"
/db_xref="CDD:31727"
gene 295305..295673
/locus_tag="A1E_01305"
/db_xref="GeneID:5626676"
CDS 295305..295673
/locus_tag="A1E_01305"
/note="COG1538 Outer membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491991.1"
/db_xref="GI:157803442"
/db_xref="GeneID:5626676"
/translation="MSIEDILKSIKGVINEPKNPIHGNDSENEDILELTEIVNQVEEE
KLISTKSAEAIGDILKNFTDTIKDKKLDNNFPSKNALEELVVEMLKPELKLWLDKNLP
LLVKELVEIEIKKLVQNSKR"
misc_feature <295305..295670
/locus_tag="A1E_01305"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3827"
/db_xref="CDD:33620"
gene 295853..297634
/gene="thrS"
/locus_tag="A1E_01310"
/db_xref="GeneID:5626677"
CDS 295853..297634
/gene="thrS"
/locus_tag="A1E_01310"
/EC_number="6.1.1.3"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_001491992.1"
/db_xref="GI:157803443"
/db_xref="GeneID:5626677"
/translation="MLNKLCKILFFIKLLLMTGQSYAVPPTLPPSLPDVEVATTEDKE
FRYNSDTSIFDKFKQFFSKPQKKYISPKSTNEQTKTADQEEPKLSQEPNENEHADSFM
DISNVVLPSAASNNDVYTNTNHESSVNLASYDNIPDIQVMQQEPSESEIAETFIDIGS
TKLPSATSDEMRDAEIAANVHDENLASNIITRNNIPRPMVSIPLARPGSYVVPPSPPV
QIYKPTNLLAVHKKHILLNPPPDVHKTQESIIPIAPPATSSIPNMPAISLPAVSTPVT
QDTNPSTIPAIVPLVGTPVVPSNVPVPLAMPTDQPSTQPIMPSSTNTAISTTPIVVPD
TNFSADINNSQETLTASSNIPKKQDWNTPLIPVVVVNPNQSKSSEMQVKNSQTTNNQE
KSLPVSSPNVMMQEQYNNINNETLESATKFVKDETQMLLLPDDDIVLGKLTEQATLEQ
MDMYAYIRLFQKKEEWIVNAERRKVVESFIKYDNDINKKKDIYANLSYYGAVDNAFRA
VDRNNLFGLRALLDVYPILQEKSRLGETLLTAATYNDNYYLAKFLVIRGIKISTLNYK
CQYPLDIALVQGNSNIACILIKAKGYN"
misc_feature 297368..297619
/gene="thrS"
/locus_tag="A1E_01310"
/note="Ankyrin repeats (3 copies); Region: Ank_2;
pfam12796"
/db_xref="CDD:205076"
misc_feature 297374..>297619
/gene="thrS"
/locus_tag="A1E_01310"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cd00204"
/db_xref="CDD:29261"
gene 297801..299789
/locus_tag="A1E_01315"
/db_xref="GeneID:5626678"
CDS 297801..299789
/locus_tag="A1E_01315"
/note="decatenates newly replicated chromosomal DNA and
relaxes positive and negative DNA supercoiling"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit B"
/protein_id="YP_001491993.1"
/db_xref="GI:157803444"
/db_xref="GeneID:5626678"
/translation="MHDLFSFNKEKKIKLVNNSYSAKDIEVLEGLEPVRKRPGMYIGG
IDSSAMHHLVSEVLDNAMDEAVAGYASIITIKMHQDHSITIFDNGRGIPIDNHPKFPD
KSALEVILTTLHSGGKFSNNVYHTAGGLHGVGISVVNALSKHLDVKVYKQGKLYSQSY
SKGEKLTGLICEEAPKRLRGTSINFTPDPEIFGEKLHFNPKKIYELARSKAYLYRGVT
IEWECEVEVSSDIPKKALINFPNGLKDYLSSKITLDNLITQEIFSGNIESKPDGVILE
WAICWQNNDNSAFIQSYCNTVPTPQGGTHEQGLKSAILRGLKTYGEMIGNKKAANLTI
EDILETASVVLSIFISEPSFQGQTKEKLVSQGVSKPVENIIKDHFDHFLSSNKALATN
LLEHVIAIAEFRISKKNTKNISRKNATQKLRLPGKLADCTRTSPEGTELFIVEGDSAG
GSAKQARNRETQAVLPLWGKVLNVASSRLEKIVNNQAIQDLEIALACGSLKNYKEENL
RYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEKGHLYLAKPPLYRLTQSNKTYYA
ADEEEKARLTDKLSKTSKAQIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTLEDFQ
NVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINDLDI"
misc_feature 297849..299747
/locus_tag="A1E_01315"
/note="DNA topoisomerase IV subunit B; Reviewed; Region:
PRK05559"
/db_xref="CDD:180127"
misc_feature 297948..298247
/locus_tag="A1E_01315"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(297966..297968,297978..297980,297987..297989,
298053..298055,298059..298061,298065..298067,
298071..298076,298194..298205)
/locus_tag="A1E_01315"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 297978..297980
/locus_tag="A1E_01315"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(298065..298067,298071..298073,298194..298196,
298200..298202)
/locus_tag="A1E_01315"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 298521..299039
/locus_tag="A1E_01315"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 298683..298685
/locus_tag="A1E_01315"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(298851..298853,298860..298865,298869..298871,
299004..299009,299019..299021,299031..299033)
/locus_tag="A1E_01315"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(298869..298871,298875..298877)
/locus_tag="A1E_01315"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 299115..299456
/locus_tag="A1E_01315"
/note="Topoisomerase-primase domain. This is a nucleotidyl
transferase/hydrolase domain found in type IA, type IIA
and type IIB topoisomerases, bacterial DnaG-type primases,
small primase-like proteins from bacteria and archaea, OLD
family nucleases from...; Region: TOPRIM; cl00718"
/db_xref="CDD:207177"
misc_feature order(299133..299138,299145..299147,299352..299354,
299358..299360,299364..299366)
/locus_tag="A1E_01315"
/note="active site"
/db_xref="CDD:173773"
misc_feature order(299133..299135,299352..299354)
/locus_tag="A1E_01315"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173773"
misc_feature 299544..299738
/locus_tag="A1E_01315"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 299958..301334
/locus_tag="A1E_01320"
/db_xref="GeneID:5626679"
CDS 299958..301334
/locus_tag="A1E_01320"
/note="COG0793 Periplasmic protease"
/codon_start=1
/transl_table=11
/product="tail-specific protease precursor"
/protein_id="YP_001491994.1"
/db_xref="GI:157803445"
/db_xref="GeneID:5626679"
/translation="MLLRLIITLWFSINSICTFAEEEKEPENKISNQEAYKQFQNVFE
RIEKDYVQIPDRQKMIDAAINGMLNSLDPHSSYYTDEDLEDIFTFTKGEFGGIGVEIM
YDSGVIKIISPIDDLPAFKAGLKGGDYIVGVNDELVSTLGPHKAIKEMRGTAGTKVKL
LIIKEEEAKPQEIELTREIVKIKPIKAHLEKNNIAYIRITTFNESTISELKAAVKKLK
IESKDNLRGIILDLRNNAGGILDQAIAVSDYFIDSGVIVTTKGRTASSNSEIKANEFS
LKAPKVPMIVLINGNSASASEIVAGALQDHKRAIILGTKSFGKGSVQSLTQINSRAAV
KLTISKYYTPSGRSIQAEGIEPDIIIEPAKVEYPEVKKIDKRFSESSLKNYLKNDNEK
NKDHSSKNKDSKKETKTKNNKQEENELSELYKKDYQFARAYDVITGLIINKKLETSDI
KQEDKDKE"
misc_feature 299958..301115
/locus_tag="A1E_01320"
/note="Periplasmic protease [Cell envelope biogenesis,
outer membrane]; Region: Prc; COG0793"
/db_xref="CDD:31136"
misc_feature 300057..>300194
/locus_tag="A1E_01320"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:207630"
misc_feature 300237..300494
/locus_tag="A1E_01320"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:29045"
misc_feature order(300243..300254,300258..300260,300393..300398,
300405..300410)
/locus_tag="A1E_01320"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29045"
misc_feature <300537..301040
/locus_tag="A1E_01320"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature order(300837..300839,300912..300914)
/locus_tag="A1E_01320"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
gene 301577..303070
/locus_tag="A1E_01325"
/db_xref="GeneID:5626632"
CDS 301577..303070
/locus_tag="A1E_01325"
/note="COG0642 Signal transduction histidine kinase"
/codon_start=1
/transl_table=11
/product="histidine kinase sensor protein"
/protein_id="YP_001491995.1"
/db_xref="GI:157803446"
/db_xref="GeneID:5626632"
/translation="MNHNKYIVRLSFIILFLNIVINMMFYRYFMIKEMIVKHVALEHT
QIVKLYTDNIWNTHKNVISKLHKFGYLKLLQDQEFIDFVKITAQWFTNLNINISIYDL
KGNKFITSNMLHMYSVENYKDDSLVEMVTAKIDKFFLKSFTSKAPLQDAFEGIASHIL
LPRVIIENESDLTVEEASFVTSYIPVIDNNLDYPVNAVFEINTNITNQWKNITSLEQK
VFITFIIIFIIFCTIIISNTNYARQIIEEQLETNRNLKAQIVKLERTSSSNTKFFANI
SHELRTPLNSIIGFSEILMSERDAEKSKNYIKDINDAGKHLLSMINDILDLSKASADK
LKVDSMDLDLNKLISSSLALVKSRADQAEVALISKLPKEHVVIKADPKRLKQVLLNLL
SNAVKFTNSGGSVTIALKKDELAKLVYIKVIDTGIGIEEKDIPKTLSVFGQIDSELSR
KYEGTGLGLPLTKKLVELMKGKFDLQSKINKGTTVTITFTYDDSIEI"
misc_feature 302384..302563
/locus_tag="A1E_01325"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(302390..302392,302402..302404,302414..302416,
302423..302425,302435..302437,302444..302446,
302492..302494,302504..302506,302513..302515,
302525..302527,302534..302536,302546..302548)
/locus_tag="A1E_01325"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 302408..302410
/locus_tag="A1E_01325"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 302726..303043
/locus_tag="A1E_01325"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(302744..302746,302756..302758,302765..302767,
302840..302842,302846..302848,302852..302854,
302858..302863,302942..302953,302999..303001,
303005..303007,303020..303025,303029..303031)
/locus_tag="A1E_01325"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 302756..302758
/locus_tag="A1E_01325"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(302852..302854,302858..302860,302942..302944,
302948..302950)
/locus_tag="A1E_01325"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 303325..304065
/locus_tag="A1E_01330"
/db_xref="GeneID:5626633"
CDS 303325..304065
/locus_tag="A1E_01330"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491996.1"
/db_xref="GI:157803447"
/db_xref="GeneID:5626633"
/translation="MRLIILLFTFLFSIVSFGESETIKGKPLKYVVNNDFENRLDEQE
KEIRRLIGEVEVLQHKIDLLTQNSNIPNQEENTEISEDNNSKSQDVFDVVLLRDMPDD
TASKKPITVNQDIAPDKQAYDLALAAYKDNKLTEAQDKFKDFIKKYTNSSLISNAYFW
YGECFFKQKDYNGAAVNYLKGYKESPKGAKSSDGLLKLALSLGELKKTQEACNMLAKL
DREFPTNRTVALKKMTEDAKIKFGCKNK"
misc_feature 303688..303888
/locus_tag="A1E_01330"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:205610"
gene 304078..304740
/locus_tag="A1E_01335"
/db_xref="GeneID:5626634"
CDS 304078..304740
/locus_tag="A1E_01335"
/note="COG1729 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001491997.1"
/db_xref="GI:157803448"
/db_xref="GeneID:5626634"
/translation="MTDILNEVLSDQNEVKRLIFFKKLLPIIIIISIIVITIMVVINN
NKDKRIKNNQKNGDILVKTVGLEIIKDNKELAFNTLENLVTNSNTRIKEIAALEQVAI
KISEKKYSEVKDLLNKIIANKEYSEISTSYARIAWCALAIDDQNLDIQDKAKLTKYLN
YFDDEKKPFWATATIMKAMWDIKNNMTLQVEKNLKNLLISNNVSDLLKDQAKALLVNL
NK"
misc_feature 304078..304737
/locus_tag="A1E_01335"
/note="Protein of unknown function (DUF2659); Region:
DUF2659; pfam10858"
/db_xref="CDD:151307"
gene 304763..306007
/locus_tag="A1E_01340"
/db_xref="GeneID:5626635"
CDS 304763..306007
/locus_tag="A1E_01340"
/note="COG1520 FOG: WD40-like repeat"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit B"
/protein_id="YP_001491998.1"
/db_xref="GI:157803449"
/db_xref="GeneID:5626635"
/translation="MTKKIALLLLPWILISCNGLGPQRVKNIVELTPKLSIQTNEPIY
LDSNANIYAFNVNMLKNKQYSVTTSKTITEPVFIGNIIYALDVRSNISAFSIEKNKII
WSYNLSRHKKDNYIGGGILHYNGKLYVTYGSRLLVVLDAKSGYEIIRKELPDIIRMKP
VMLNDNTVLVQTISNQTIALNAETLKTVWEHESLAEVLSASYFMRPIVQHDNVIVTYN
SGQVLALNIKNGEVRWNFDFANLSDHIAIPNFDESSILCAPVHDNMNLYIATGLGKLI
KLSTATGSVIWHVNAEGIQSMSLIGNSLFVTNNARQIAAFNPETGKVKFVADLNDRKD
PKKLKSATFLAPFIGVDNNNKRSLNVISINGVLYSFDLDNNELNIMPHIGKIIKNIRY
YGLSTNNHLYFSTERNIIFGSK"
misc_feature 304889..305980
/locus_tag="A1E_01340"
/note="Beta-barrel assembly machinery (Bam) complex
component B and related proteins; Region: BamB_YfgL;
cd10276"
/db_xref="CDD:199834"
misc_feature order(304925..304933,304940..304942,305039..305041,
305045..305047,305054..305062,305069..305071,
305174..305176,305180..305182,305189..305197,
305204..305206,305297..305299,305303..305305,
305312..305320,305327..305329,305432..305434,
305438..305440,305447..305455,305462..305464,
305591..305593,305597..305599,305606..305614,
305621..305623,305705..305707,305711..305713,
305720..305728,305735..305737,305840..305842,
305846..305848,305855..305863,305870..305872,
305969..305971,305975..305977)
/locus_tag="A1E_01340"
/note="Trp docking motif [polypeptide binding]; other
site"
/db_xref="CDD:199834"
misc_feature 305024..305740
/locus_tag="A1E_01340"
/note="PQQ-like domain; Region: PQQ_2; pfam13360"
/db_xref="CDD:205539"
gene 306100..306576
/gene="rplM"
/locus_tag="A1E_01345"
/db_xref="GeneID:5626636"
CDS 306100..306576
/gene="rplM"
/locus_tag="A1E_01345"
/note="in Escherichia coli this protein is one of the
earliest assembly proteins in the large subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L13"
/protein_id="YP_001491999.1"
/db_xref="GI:157803450"
/db_xref="GeneID:5626636"
/translation="MKTYSAKPSEIEKKWWVIDAKNIVLGRLASRVANMLRGKHKPSF
TPHLDCGDNIIIINAAHVKLTGKKANTKDGKIYYRHTGFPGGIKNTTAGKILAGKHPE
RVIKMAVKRMITRNALGAKQMSNLYVYANSDHPHVGQEPVIYDFASQNPKNKSNYL"
misc_feature 306142..306495
/gene="rplM"
/locus_tag="A1E_01345"
/note="Ribosomal protein L13. Protein L13, a large
ribosomal subunit protein, is one of five proteins
required for an early folding intermediate of 23S rRNA in
the assembly of the large subunit. L13 is situated on the
bottom of the large subunit, near the...; Region:
Ribosomal_L13; cd00392"
/db_xref="CDD:88313"
misc_feature order(306169..306171,306175..306180,306187..306189,
306196..306198,306208..306210,306292..306294,
306298..306300,306394..306399,306415..306423,
306427..306435,306439..306447,306451..306453,
306457..306459,306469..306471,306478..306483)
/gene="rplM"
/locus_tag="A1E_01345"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88313"
misc_feature 306397..306399
/gene="rplM"
/locus_tag="A1E_01345"
/note="L3 interface [polypeptide binding]; other site"
/db_xref="CDD:88313"
gene 306573..307058
/gene="rpsI"
/locus_tag="A1E_01350"
/db_xref="GeneID:5626327"
CDS 306573..307058
/gene="rpsI"
/locus_tag="A1E_01350"
/note="forms a direct contact with the tRNA during
translation"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="YP_001492000.1"
/db_xref="GI:157803451"
/db_xref="GeneID:5626327"
/translation="MTKLKIKTDKPLTTAVLTSKKLTVKAPREKIDSASKFYATGKRK
NAIARVWLKVGKGKIVVNKKTIDQYFSSETYVKTILQPFVLTKTIDQYDVICTVRGGG
ISGQKGAILHGISKALDKSAPDFHAMLRKGGLLTRDSRVVERKKYGQRKARKKTQFSK
R"
misc_feature 306678..307055
/gene="rpsI"
/locus_tag="A1E_01350"
/note="30S ribosomal protein S9; Reviewed; Region: rpsI;
PRK00132"
/db_xref="CDD:178888"
gene 307168..307244
/locus_tag="A1E_t05696"
/db_xref="GeneID:5626328"
tRNA 307168..307244
/locus_tag="A1E_t05696"
/product="tRNA-Met"
/db_xref="GeneID:5626328"
gene 307503..307691
/locus_tag="A1E_01355"
/db_xref="GeneID:5626329"
CDS 307503..307691
/locus_tag="A1E_01355"
/note="COG2173 D-alanyl-D-alanine dipeptidase"
/codon_start=1
/transl_table=11
/product="D-alanyl-D-alanine dipeptidase"
/protein_id="YP_001492001.1"
/db_xref="GI:157803452"
/db_xref="GeneID:5626329"
/translation="MYLKDIDPTIIQSMCYYADENFVGKKVEGYKAPEAILTIDAAMI
IHLIIYDAYRPQKAVEHF"
misc_feature 307509..>307682
/locus_tag="A1E_01355"
/note="D-alanyl-D-alanine carboxypeptidase; Region: VanY;
cl00813"
/db_xref="CDD:207206"
gene 308111..308440
/gene="rpsI"
/locus_tag="A1E_01360"
/db_xref="GeneID:5626330"
CDS 308111..308440
/gene="rpsI"
/locus_tag="A1E_01360"
/note="COG2154 Pterin-4a-carbinolamine dehydratase"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="YP_001492002.1"
/db_xref="GI:157803453"
/db_xref="GeneID:5626330"
/translation="MTVLSEKKCIPCEGGVPPLEKKEIDKLLAELQNEWQVNELGHLY
KKYKFPNFVKALDFANKIAAIAEQEVHHPNLNISWGVCNVEIWTHKINGLTENDFILA
AKIESKI"
misc_feature 308210..308428
/gene="rpsI"
/locus_tag="A1E_01360"
/note="PCD_DCoH: The bifunctional protein
pterin-4alpha-carbinolamine dehydratase (PCD), also known
as DCoH (dimerization cofactor of hepatocyte nuclear
factor-1), is both a transcription activator and a
metabolic enzyme. DCoH stimulates gene expression by...;
Region: PCD_DCoH_subfamily_a; cd00913"
/db_xref="CDD:48349"
misc_feature order(308264..308266,308276..308278,308324..308326,
308333..308335,308375..308377)
/gene="rpsI"
/locus_tag="A1E_01360"
/note="aromatic arch; other site"
/db_xref="CDD:48349"
misc_feature order(308264..308269,308276..308278,308288..308290,
308309..308311,308324..308326,308330..308344)
/gene="rpsI"
/locus_tag="A1E_01360"
/note="DCoH dimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:48349"
misc_feature order(308267..308272,308288..308293,308300..308302,
308309..308314)
/gene="rpsI"
/locus_tag="A1E_01360"
/note="DCoH /HNF-1 dimer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48349"
misc_feature order(308267..308269,308288..308293,308300..308302,
308312..308314)
/gene="rpsI"
/locus_tag="A1E_01360"
/note="DCoH tetramer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48349"
misc_feature order(308318..308326,308369..308371,308375..308380)
/gene="rpsI"
/locus_tag="A1E_01360"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48349"
gene complement(309068..309553)
/locus_tag="A1E_01365"
/db_xref="GeneID:5626732"
CDS complement(309068..309553)
/locus_tag="A1E_01365"
/note="hydrolyzes diadenosine polyphosphate"
/codon_start=1
/transl_table=11
/product="dinucleoside polyphosphate hydrolase"
/protein_id="YP_001492003.1"
/db_xref="GI:157803454"
/db_xref="GeneID:5626732"
/translation="MRNASKKHLDLPYRPGVGMMILNADNHIFVGKRIDTKISAWQMP
QGGIVPGETPSIAAMREMLEEIGSDKGYIIAESKCWYSYDLPSFLIPKLWNGNFRGQK
QRWFLIRFTGNNEDININTSNPEFDQWRWASLNELLSIIIPFKRKLYQAVVKEFDSLI
Q"
misc_feature complement(309086..309520)
/locus_tag="A1E_01365"
/note="Diadenosine tetraphosphate (Ap4A) hydrolase is a
member of the Nudix hydrolase superfamily. Members of this
family are well represented in a variety of prokaryotic
and eukaryotic organisms. Phylogenetic analysis reveals
two distinct subgroups where plant...; Region:
Ap4A_hydrolase_plant_like; cd03671"
/db_xref="CDD:72891"
misc_feature complement(order(309119..309124,309128..309130,
309251..309253,309275..309280,309287..309289,
309299..309301,309305..309307,309359..309364,
309371..309373,309416..309421,309428..309430,
309446..309448,309455..309457,309506..309508))
/locus_tag="A1E_01365"
/note="putative active site [active]"
/db_xref="CDD:72891"
misc_feature complement(order(309119..309124,309128..309130,
309251..309253,309275..309280,309287..309289,
309299..309301,309305..309307,309416..309421,
309428..309430,309446..309448,309455..309457,
309506..309508))
/locus_tag="A1E_01365"
/note="Ap4A binding site [chemical binding]; other site"
/db_xref="CDD:72891"
misc_feature complement(309353..309418)
/locus_tag="A1E_01365"
/note="nudix motif; other site"
/db_xref="CDD:72891"
misc_feature complement(order(309359..309364,309371..309373))
/locus_tag="A1E_01365"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:72891"
gene complement(309578..310930)
/gene="pleD"
/locus_tag="A1E_01370"
/db_xref="GeneID:5626733"
CDS complement(309578..310930)
/gene="pleD"
/locus_tag="A1E_01370"
/note="involved in swarmer-to-stalked cell differentiation
in Caulobacter crescentus; catalyzes the condensation of
two GTP molecules to form the secondary messenger cyclic
di-GMP (c-di-GMP); upon phosphorylation of domain D1 the
protein dimerizes; presumably this allows the two
GTP-bound GGDEF (diguanylate cyclase) domains to catalyze
the condensation reaction; allosterically inhibited by
c-di-GMP"
/codon_start=1
/transl_table=11
/product="response regulator PleD"
/protein_id="YP_001492004.1"
/db_xref="GI:157803455"
/db_xref="GeneID:5626733"
/translation="MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILTKE
KIDIILLDVMMSEMDGFEVCKRIKTNLETTHIPVVMVTALSDIDDRVKGLEAGADEFL
TKPINDTALFVRLKSLYRMKSLIDELKLRNSTNALLGVTNIEMHDTFADKKILLINDD
VVQAKNIRQMLLKITASIKVISNSDELDIINEYTPDLVIISSTLENDDPLRISVILRR
KAKISGVVIILQIDEDGMPLVVKGVELGINDYFVYPIEESELLARIRTQLRRKQYQDN
LRNYLEQSVNLAAKDCLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKYVN
DTYGHQAGDKILTIVSRILKNNLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRV
KIEYMDFHIEDQIEPLKKTISIGVTEYKKEESIESFIARADNAMYEAKRTGKNKVVKL
"
misc_feature complement(309581..310930)
/gene="pleD"
/locus_tag="A1E_01370"
/note="response regulator PleD; Reviewed; Region: pleD;
PRK09581"
/db_xref="CDD:181966"
misc_feature complement(310577..310918)
/gene="pleD"
/locus_tag="A1E_01370"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(310616..310621,310628..310630,
310685..310687,310751..310753,310775..310777,
310904..310909))
/gene="pleD"
/locus_tag="A1E_01370"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(310775..310777)
/gene="pleD"
/locus_tag="A1E_01370"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(310751..310759,310763..310768))
/gene="pleD"
/locus_tag="A1E_01370"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(310613..310621)
/gene="pleD"
/locus_tag="A1E_01370"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(310127..310468)
/gene="pleD"
/locus_tag="A1E_01370"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(310169..310174,310181..310183,
310244..310246,310304..310306,310328..310330,
310454..310459))
/gene="pleD"
/locus_tag="A1E_01370"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(310328..310330)
/gene="pleD"
/locus_tag="A1E_01370"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(310304..310312,310316..310321))
/gene="pleD"
/locus_tag="A1E_01370"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(310166..310174)
/gene="pleD"
/locus_tag="A1E_01370"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(309587..310060)
/gene="pleD"
/locus_tag="A1E_01370"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(309824..309826,309953..309955))
/gene="pleD"
/locus_tag="A1E_01370"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(309821..309832,309836..309838,
309902..309904,309914..309916,309926..309931,
309938..309940))
/gene="pleD"
/locus_tag="A1E_01370"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(309764..309766,309848..309850))
/gene="pleD"
/locus_tag="A1E_01370"
/note="I-site; other site"
/db_xref="CDD:143635"
gene 311006..311572
/locus_tag="A1E_01375"
/db_xref="GeneID:5626734"
CDS 311006..311572
/locus_tag="A1E_01375"
/note="Involved in peptide bond synthesis; alters the
affinity of the ribosome for aminoacyl-tRNA"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_001492005.1"
/db_xref="GI:157803456"
/db_xref="GeneID:5626734"
/translation="MKISANSIRTGNILVYSNDLWVVSRTPEHTQPGKGGAYVQVEMK
NLKTGTKRNERFSSSDYLEKAELEQKDYQFLYFEGNDLVLMDIKHFDQINVPKEILEE
KLPFLAENMIVKVEFYNEKPLNIELPPTVIIEISETDPVIKGATATASYKPAILTNGI
KVKVPQYLEIGEKIVVKTDDMTYVERAK"
misc_feature 311009..311569
/locus_tag="A1E_01375"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:179058"
misc_feature 311015..311191
/locus_tag="A1E_01375"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature 311207..311389
/locus_tag="A1E_01375"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:88435"
misc_feature order(311276..311278,311351..311353,311366..311371)
/locus_tag="A1E_01375"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88435"
misc_feature 311396..311563
/locus_tag="A1E_01375"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:88469"
misc_feature order(311483..311485,311534..311536,311549..311554)
/locus_tag="A1E_01375"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88469"
gene 311723..312466
/locus_tag="A1E_01380"
/db_xref="GeneID:5626735"
CDS 311723..312466
/locus_tag="A1E_01380"
/note="COG0483 Archaeal fructose-1,6-bisphosphatase and
related enzymes of inositol monophosphatase family"
/codon_start=1
/transl_table=11
/product="extragenic suppressor protein SuhB"
/protein_id="YP_001492006.1"
/db_xref="GI:157803457"
/db_xref="GeneID:5626735"
/translation="MQPITNLLINALRKAVKFLHRDFLELEMLQKNAVRNEEFCKRSY
LKLKTLLCEELQKHTKYLFFSEDKFDLNNNYDSVFLMNPIDSLNNFVRSIPFFAISVT
YLKRNQGVLTPISTVIYFPALNEIYYAEKGKGAWIEKNNLNSHYQRLRLRVSDNADLK
NCLAIIEDLNRNNLGEEIDNIRSFGSPCYAATLVASGKADLICLSLLNFTLYYAFELL
IKEAGGIIIDSSNKFIYSNRYLAKKLKKY"
misc_feature 311735..312412
/locus_tag="A1E_01380"
/note="Inositol-monophosphatase-like domains. This family
of phosphatases is dependent on bivalent metal ions such
as Mg++, and many members are inhibited by Li+ (which is
thought to displace a bivalent ion in the active site).
Substrates include fructose-1; Region: IMPase_like;
cd01637"
/db_xref="CDD:30135"
misc_feature order(311852..311854,311918..311923,311966..311983,
312350..312355)
/locus_tag="A1E_01380"
/note="active site"
/db_xref="CDD:30135"
gene 312532..312861
/locus_tag="A1E_01385"
/db_xref="GeneID:5626736"
CDS 312532..312861
/locus_tag="A1E_01385"
/note="COG0012 Predicted GTPase, probable translation
factor"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_001492007.1"
/db_xref="GI:157803458"
/db_xref="GeneID:5626736"
/translation="MHKVMAHYKQFEFDCDFGGQRSKFKFYIGTPQEGHHPLQFQAKW
LSEERGGTIPDEVMKAISQLNDLAKKNGVPLSDLCVYALGTAQEVQTQEEYEDKNENQ
EDKAEQA"
misc_feature 312553..312795
/locus_tag="A1E_01385"
/note="Domain of unknown function (DUF2610); Region:
DUF2610; pfam11020"
/db_xref="CDD:204583"
gene 312893..313588
/locus_tag="A1E_01390"
/db_xref="GeneID:5626129"
CDS 312893..313588
/locus_tag="A1E_01390"
/note="catalyzes the decarboxylaton of
phospatidyl-L-sering to phosphatidylethanolamine"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="YP_001492008.1"
/db_xref="GI:157803459"
/db_xref="GeneID:5626129"
/translation="MKHYNDLFKIIHREGYIFIASFALVSFLLASFNTKLGCIGFIAT
AWCIYFFRNPDRYVPINDDLVISPADGVIQEIKEALPPPELGLGDVAMIRVSIFLNIF
NVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETDQGQKIIFVQIAGL
IARRIICDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTTIGGETIIADF
GRKKTAQFKFKRK"
misc_feature 312920..313549
/locus_tag="A1E_01390"
/note="phosphatidylserine decarboxylase; Provisional;
Region: PRK05305"
/db_xref="CDD:180005"
gene 313815..314588
/locus_tag="A1E_01395"
/db_xref="GeneID:5626130"
CDS 313815..314588
/locus_tag="A1E_01395"
/note="COG1183 Phosphatidylserine synthase"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--serine
O-phosphatidyltransferase"
/protein_id="YP_001492009.1"
/db_xref="GI:157803460"
/db_xref="GeneID:5626130"
/translation="MLKIRKSIITKPVPIIKLIPNFITLLGLVTGMSSIKFALDSRWE
LAVYCIIVAAIIDGIDGRIARMLNAASPFGAELDSLCDFANFGIAPAYLIYLWSFQQY
EYKVLSSAVMLLFIVCMALRLARFNVGIYQPTQDKKTEYFFTGLPAPCGALLALTPVM
IDFEIGTLLNINTRTHTITINIYLAIIALLLASRLPTISTKNLSIKPEYLSLAMILVA
IVIINLIIYPWYSMPLIAVIYILSIPICYFFKHRGYWSN"
misc_feature 313839..314579
/locus_tag="A1E_01395"
/note="Phosphatidylserine synthase [Lipid metabolism];
Region: PssA; COG1183"
/db_xref="CDD:31376"
misc_feature 313884..>314198
/locus_tag="A1E_01395"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 314589..315641
/locus_tag="A1E_01400"
/db_xref="GeneID:5626131"
CDS 314589..315641
/locus_tag="A1E_01400"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein A"
/protein_id="YP_001492010.1"
/db_xref="GI:157803461"
/db_xref="GeneID:5626131"
/translation="MLRVLQHAINKYTHHPFTKYVIIIALVIFIYFGYRIYVWANTQS
TDNAYIDADISNVSAEVSGVLIKLFVTNNTKVNKGDLIGEIDDRDYKAKLAALEASIE
ACKKNIEIIEQKTSIGRISLEQAAEKLKLTKISFDIATTDFTRVQELNKAKLASSKTL
DDARNNYQKAKTAYKQAQLDLDISKQNVALLDLEKSAAKEKFKELTENKKVTLRSLQS
TKLIAMVSGIFGNSSLAIGNYILPGRVLFSIVQDNTMYIQANFKETQIKKFKSGMKVK
IEFDALPKKVIYGKIRNIAPATGSKFSLIPPDNAAGNFTKIVQRVPVLIDFESPNANL
VPGMSAIVSIRTDQKI"
misc_feature 314652..315635
/locus_tag="A1E_01400"
/note="Multidrug resistance efflux pump [Defense
mechanisms]; Region: EmrA; COG1566"
/db_xref="CDD:31754"
misc_feature 314754..314894
/locus_tag="A1E_01400"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 315246..315599
/locus_tag="A1E_01400"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene complement(316140..316343)
/locus_tag="A1E_01405"
/db_xref="GeneID:5626132"
CDS complement(316140..316343)
/locus_tag="A1E_01405"
/note="COG1566 Multidrug resistance efflux pump"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492011.1"
/db_xref="GI:157803462"
/db_xref="GeneID:5626132"
/translation="MKTNDIIKVAVGASSVAQKALNSIVDKSCSIIEDKILKGHYVTR
EEFEKLQILVIKLKKELAELTGK"
gene complement(316343..316585)
/locus_tag="A1E_01410"
/db_xref="GeneID:5626133"
CDS complement(316343..316585)
/locus_tag="A1E_01410"
/note="COG0271 Stress-induced morphogen (activity
unknown)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492012.1"
/db_xref="GI:157803463"
/db_xref="GeneID:5626133"
/translation="MSRIERIQAKLSVLKPYFQEIIDESYKHTSHYDGIHSHIKIRIS
AKILQGKSLIANHRTINNLLVDEFNNGLHALSIEVL"
misc_feature complement(316346..316573)
/locus_tag="A1E_01410"
/note="Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms]; Region: BolA; COG0271"
/db_xref="CDD:30620"
gene 316647..317888
/locus_tag="A1E_01415"
/db_xref="GeneID:5626286"
CDS 316647..317888
/locus_tag="A1E_01415"
/EC_number="4.1.1.65"
/note="COG2200 FOG: EAL domain"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="YP_001492013.1"
/db_xref="GI:157803464"
/db_xref="GeneID:5626286"
/translation="MIKMAMSELITDYKDLQDEIDKLEKGVCFACRLVNYDEIEFIEQ
DKYFIIKDLAQIIENVSAELNILSKFKKIKQDRILFILNTIDSNLIKNFARKLYLFSQ
LYINEQKPAIYMNCCIASIKFPKVSNNAKEIEKTLNMLLAQNNNYYYREYSSTAHDLG
NIRKSNLQLNLLRQALANKTMRFAYQPIIDRSTMKIQYYECLLRIPDENGVYISVGPI
IPIAENKGLIFIIDQIVLDMTVNELAQNPNLILAVNISNIGTIDEALWEIAENLLKAY
NVRDRLIIEITETSFNEHYDKIILFINKLRQYGCKFALDDFGSGFTSFKQLQSLPIDI
IKIDSKYVRSITSDVQSRYFVERLIRISEDLGIATVAEFVENGEIAKFLIDLKVGGLQ
GNFYSEAKFDRVDVIPTESGI"
misc_feature 317187..317843
/locus_tag="A1E_01415"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 318046..319479
/gene="murC"
/locus_tag="A1E_01420"
/db_xref="GeneID:5626287"
CDS 318046..319479
/gene="murC"
/locus_tag="A1E_01420"
/EC_number="6.3.2.8"
/note="Catalyzes the formation of
UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate
and L-alanine in peptidoglycan synthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramate--L-alanine ligase"
/protein_id="YP_001492014.1"
/db_xref="GI:157803465"
/db_xref="GeneID:5626287"
/translation="MLLLELKKINQTLETIHFIGIGGVGMSGIAEILHNLGYKVQGSD
LVENYNTKRLESYGIKIFLGHVPQNITNVSYVVISSAINPDNPEIQEALERKIPIIRR
AEMLAELMRLKCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINNRSTNAYLG
SSNYLIAEADESDATFIHIPSTIAIITNIDPEHLDYYKDFATLISAFRSFIINLPFYG
FAVCCIDHKIVRKLVDDITERKIVTYGIDSADAHIIAFNINTDIASSTFDVKISLPNV
LGTTIIEKITIPIPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAE
YNMASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQHLFDDFMLCF
ADADILYITDIYAAGENPIEGITGQSLVDKITKNKYHDQANFLATLDDAVGVIIDNAV
SGDVIIMMGAGNISSFANELPKKFGNL"
misc_feature 318064..319476
/gene="murC"
/locus_tag="A1E_01420"
/note="UDP-N-acetylmuramate--L-alanine ligase;
Provisional; Region: murC; PRK00421"
/db_xref="CDD:179018"
misc_feature 318088..318384
/gene="murC"
/locus_tag="A1E_01420"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 318403..318930
/gene="murC"
/locus_tag="A1E_01420"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 319018..319287
/gene="murC"
/locus_tag="A1E_01420"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 319476..320369
/gene="murB"
/locus_tag="A1E_01425"
/db_xref="GeneID:5626288"
CDS 319476..320369
/gene="murB"
/locus_tag="A1E_01425"
/EC_number="1.1.1.158"
/note="catalyzes the reduction of UDP-N-acetylglucosamine
enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylenolpyruvoylglucosamine reductase"
/protein_id="YP_001492015.1"
/db_xref="GI:157803466"
/db_xref="GeneID:5626288"
/translation="MMTLPIVKGEYKKDYNLKHLTWFKVGGNAEIFFKPFDSEDLASF
LRQNKQKLPITTFGAGSNIIIRDGGIEGVTIKLGQSFSNIDFIDDNHLVVGSSCLNYN
LAKFCQANAISGFEFLVGIPGTIGGGAAMNAGAYGSEFKDIIVRIEAIDFAGNFLTFT
NEEIGFKYRSNNLPKNLIILKAIFKVNKGDSENILLRMNEINATRSRTQPIKERTGGS
TFANPEGGLKSWQLIDKAGLRGYRIGGASVSELHCNFMINNGDATAKDLEDLGNFVRQ
NVFEDSGVKLNWEIKRIGKYV"
misc_feature 319476..320363
/gene="murB"
/locus_tag="A1E_01425"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional; Region: murB; PRK13905"
/db_xref="CDD:184385"
misc_feature 319560..319955
/gene="murB"
/locus_tag="A1E_01425"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
misc_feature 320046..320357
/gene="murB"
/locus_tag="A1E_01425"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase,
C-terminal domain; Region: MurB_C; pfam02873"
/db_xref="CDD:111727"
gene 320438..321502
/gene="ddl"
/locus_tag="A1E_01430"
/db_xref="GeneID:5626289"
CDS 320438..321502
/gene="ddl"
/locus_tag="A1E_01430"
/note="D-alanine--D-alanine ligase; DdlA; DdlB;
cytoplasmic; catalyzes the formation of D-alanyl-D-alanine
from two D-alanines in peptidoglycan synthesis; there are
two forms of this enzyme in Escherichia coli"
/codon_start=1
/transl_table=11
/product="D-alanine--D-alanine ligase"
/protein_id="YP_001492016.1"
/db_xref="GI:157803467"
/db_xref="GeneID:5626289"
/translation="MHQYQIHWVEHSEVKILSNIVVRLEYKERGVKSITNRRARHDAV
SESKSIDYSGKKHIALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFK
LQEIKPDIVFNCLHGTYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTN
NINMAESIVVNKSDNIKIEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFANYDFPYGD
QVIIEKYIKGRELQVAVLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTN
LYDKLLIESEKIYKTMNCKGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAY
AGINFTNLIEEIIKAASFES"
misc_feature 320501..320593
/gene="ddl"
/locus_tag="A1E_01430"
/note="Rickettsial palindromic element RPE2 domain;
Region: RPE2; TIGR03774"
/db_xref="CDD:163486"
misc_feature 320594..321499
/gene="ddl"
/locus_tag="A1E_01430"
/note="D-alanine--D-alanine ligase; Reviewed; Region: ddl;
PRK01372"
/db_xref="CDD:179288"
misc_feature 320603..320854
/gene="ddl"
/locus_tag="A1E_01430"
/note="D-ala D-ala ligase N-terminus; Region:
Dala_Dala_lig_N; pfam01820"
/db_xref="CDD:201991"
misc_feature 320921..321481
/gene="ddl"
/locus_tag="A1E_01430"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
gene 321499..322302
/locus_tag="A1E_01435"
/db_xref="GeneID:5626290"
CDS 321499..322302
/locus_tag="A1E_01435"
/note="COG1589 Cell division septal protein"
/codon_start=1
/transl_table=11
/product="cell division protein ftsQ"
/protein_id="YP_001492017.1"
/db_xref="GI:157803468"
/db_xref="GeneID:5626290"
/translation="MRQKTISNKQKQTKKTNNISLRRKLGLMYTKAILALKVALMIFV
CLFVFTKYFAGVKTYLTTNIYKITTKLGFKLENVIIEGQQNVDEPTILKVLNASSGSP
IFALKLDAIRNNLKKNKWIKEVYVTRRLPNTVYIKLFEREPIAIWQINNQLFLVDEEG
YKISKNIQPFPHLLHVVGEGANIYAGKLVSELQKYPALINKTSAAVRLGDRRWDLNLE
GNISIKLPEKEFEEALKYIDALNKANKLFNQNYKVLDLRDRNKYYIEKY"
misc_feature 321559..322299
/locus_tag="A1E_01435"
/note="Cell division septal protein [Cell envelope
biogenesis, outer membrane]; Region: FtsQ; COG1589"
/db_xref="CDD:31777"
misc_feature 321721..321921
/locus_tag="A1E_01435"
/note="POTRA domain, FtsQ-type; Region: POTRA_1;
pfam08478"
/db_xref="CDD:149506"
misc_feature 321928..322269
/locus_tag="A1E_01435"
/note="Cell division protein FtsQ; Region: FtsQ;
pfam03799"
/db_xref="CDD:202772"
gene 322331..323566
/locus_tag="A1E_01440"
/db_xref="GeneID:5626078"
CDS 322331..323566
/locus_tag="A1E_01440"
/codon_start=1
/transl_table=11
/product="cell division protein FtsA"
/protein_id="YP_001492018.1"
/db_xref="GI:157803469"
/db_xref="GeneID:5626078"
/translation="MKEKISNFVTLDFGSSKIAVIAAYISKKGEIKVASQNLHHSKGI
KSGVISDLKNAETSIVSAIYALEKDCGKNIKKIILSLSGADTKSYYINYTMKVNGQTV
TQQDIKKLLQKALLEFKVKHQEIIHYFPLEFTLDNNSVENPIGMYGRELSCELHIIAA
SSNMLSNIVQCFAKCHVEVTNITLAIYASAISCLTNDEKNLGSLIIDMGDKTTSFGIF
FAGKLIYTGHINVGGFHISSDIAKVFGIDFVTAEKLKILYGNATIPLFEKDSIINMDD
FQVDTHHNLNTSVTLYQLAEVIRARAEEILSMVKAEYDKATKGQVEVLRVVITGGGSQ
LRGLKELSNRVFEKQSRIGKPEIIAGFIEDNNPAIYAATIGMLKIHALKQQKEFAHIR
FDENSSFFKKAFDWFKENV"
misc_feature 322349..323467
/locus_tag="A1E_01440"
/note="cell division protein FtsA; Region: ftsA;
TIGR01174"
/db_xref="CDD:162236"
misc_feature 322352..322909
/locus_tag="A1E_01440"
/note="Cell division protein FtsA; Region: FtsA;
smart00842"
/db_xref="CDD:197910"
misc_feature 322940..323368
/locus_tag="A1E_01440"
/note="Cell division protein FtsA; Region: FtsA;
pfam14450"
/db_xref="CDD:206616"
gene complement(323713..323946)
/locus_tag="A1E_01445"
/db_xref="GeneID:5626079"
CDS complement(323713..323946)
/locus_tag="A1E_01445"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492019.1"
/db_xref="GI:157803470"
/db_xref="GeneID:5626079"
/translation="MVKTNDSYWTIKTIAKILTGEEKATDSHTVITIKTGNPYIVKAV
IEKTVITYNRFKIARTTSTPEWLLCNSISSMDE"
gene complement(325123..325590)
/locus_tag="A1E_01450"
/db_xref="GeneID:5626080"
CDS complement(325123..325590)
/locus_tag="A1E_01450"
/note="COG0849 Actin-like ATPase involved in cell
division"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492020.1"
/db_xref="GI:157803471"
/db_xref="GeneID:5626080"
/translation="MIHNYLTEIWLIIGIICVVIEFFTVPSIGFLFLGLGALSNTLVV
YNYDINLQNQIMIFGILSLIWFSILYLPLKKYVYSTTAKAENYSDMVGKTVEVHSSTI
SSHTIVRQVKWSGVIMNAYLAPNEEEAKTGDQLFIIKVKGNILVCSRHKPNHH"
gene complement(325580..326101)
/locus_tag="A1E_01455"
/db_xref="GeneID:5626081"
CDS complement(325580..326101)
/locus_tag="A1E_01455"
/codon_start=1
/transl_table=11
/product="cytochrome c"
/protein_id="YP_001492021.1"
/db_xref="GI:157803472"
/db_xref="GeneID:5626081"
/translation="MSGKELNKIVAAILLASLIAMMVGFVANILYKPNLQVLHRGYSV
AVHENSVASTSEAPAAVNIAELMKTANADNGREIAKKCLMCHSLDKDGPNKLGPHLWD
VAGRPKASIADYKYSSALSKLDGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKLQEIA
DIILFLKTYVHDT"
misc_feature complement(325586..325987)
/locus_tag="A1E_01455"
/note="Cytochrome c2 [Energy production and conversion];
Region: COG3474"
/db_xref="CDD:33277"
gene 326646..326819
/gene="ddl"
/locus_tag="A1E_01460"
/db_xref="GeneID:5626082"
CDS 326646..326819
/gene="ddl"
/locus_tag="A1E_01460"
/EC_number="6.3.2.4"
/note="COG3474 Cytochrome c2"
/codon_start=1
/transl_table=11
/product="D-alanine--D-alanine ligase"
/protein_id="YP_001492022.1"
/db_xref="GI:157803473"
/db_xref="GeneID:5626082"
/translation="MKSTGQIFGNHLGGAANLAASIIKGASGNVLDILKNMGYGIVTT
ASLIINGLSLCRI"
gene complement(327248..328114)
/gene="lpxC"
/locus_tag="A1E_01465"
/db_xref="GeneID:5626217"
CDS complement(327248..328114)
/gene="lpxC"
/locus_tag="A1E_01465"
/note="zinc-dependent; catalyzes the deacetylation of
UDP-(3-O-acyl)-N-acetylglucosamine to
UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second
step of lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase"
/protein_id="YP_001492023.1"
/db_xref="GI:157803474"
/db_xref="GeneID:5626217"
/translation="MQQSTLLKPVSCYGIGVHSGKRTQLTIEPAKENTGIIFIRTDIS
SENNYIEASYLNVSGTLLSTTISNDHKVQISTIEHLMAALWGCEIDNAIIKIDGPEVP
IMDGSSKLFVFMIECAGKKLQNAPRKYLKILKDIKVIHKDCELYCTPSNHMTVDLTID
FNSKAIGKQNLSFSNQESFTKNIADARTFGFIKDVHDLQSKGLALGASFENAIAINEE
DKILNPNGLRYEDEFVRHKLLDLFGDLYTSGTNVVSSIKGYKTSHALNNELLHKIFCD
TTSYKFVTASEL"
misc_feature complement(327254..328114)
/gene="lpxC"
/locus_tag="A1E_01465"
/note="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; Reviewed; Region: lpxC; PRK13186"
/db_xref="CDD:183882"
misc_feature complement(327281..328114)
/gene="lpxC"
/locus_tag="A1E_01465"
/note="UDP-3-O-acyl N-acetylglycosamine deacetylase;
Region: LpxC; pfam03331"
/db_xref="CDD:202596"
gene complement(328307..329455)
/locus_tag="A1E_01470"
/db_xref="GeneID:5626218"
CDS complement(328307..329455)
/locus_tag="A1E_01470"
/note="COG0774 UDP-3-O-acyl-N-acetylglucosamine
deacetylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492024.1"
/db_xref="GI:157803475"
/db_xref="GeneID:5626218"
/translation="MTFKNDYKTIFFSLLGIFIFSCINAINFYNFQNFLLINKNLGGE
QINHINQTKFIGSIIAGFALTQLINKLSNTKIILISLSLLIICTINLILLNNYTLIKI
NFILINFGIFSYFTSITLHIIESVKGKKYFFLACIILLWAGGNLMVDLLNPFIKPTNN
TIVMCALLYCINILTEFLHYNPTSHKLNLNSQFSSLIKNVELQLLTGFVVAYVTLDIL
WYYEAFALKKKLALINLRLILKYIFLLIGLSIIPICYILSKVNKYLANLSLTIILLIC
FILLPLHGTNKKLNILYIILIGNCLGAIFICNILILIDKFRDYELRTALFSYFSMCSI
GIYAGALSSHVPYGTINGSDFLFSVFAVVGSFVAYHFWYFIKYKLYRF"
gene 329882..331948
/locus_tag="A1E_01475"
/db_xref="GeneID:5626219"
CDS 329882..331948
/locus_tag="A1E_01475"
/note="COG1530 Ribonucleases G and E"
/codon_start=1
/transl_table=11
/product="ribonuclease E"
/protein_id="YP_001492025.1"
/db_xref="GI:157803476"
/db_xref="GeneID:5626219"
/translation="MNKKIIIDANFPTETRVVLLGQSNNIEDIEFQTTVRQQNKGNIY
LAQVTRIEPSLQAVFIEYGMDKSGFLPFSEIHPNYYNLPASERNFPVNAFPEIALANI
TVEDDQEKPIAIYDSLVDSEEIDLKTIEDLVESKLQSELNLEGADDIEIIQSGIDSNI
PQYKQYKVQEVIRKNQILLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGIS
RKISNVEERKRLKDILNKIVSGNSYSVIVRTAGRGSSSLDLKKDYNYLVRLWNKIRKS
TIKFPAPCFIHEEDSIIRKTIRDMCDHNVKEVVIQGQEAYDDAAKFMQDLLPSELSKL
KAHKNKTPIFTQFQVEEQLVKLYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKN
IEETALKTNLEAAKAVAKQVKLRDLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRA
RIQTGNISQFGLLEFSRQRLRSSFLETNSSICSHCNGKGVIRANDANAMLILRTIENE
IFEERIDVINVFTNIASVIYLLNNKRAEIKFIEEKYNIKLNFYSDPNATSDSYSIEKV
KLLKKNNNNVNSVKPVIQNHSADYTEDEPQKEQLRKNKHKWKTVNNNVSVEEKNKKLE
TKQEVEQSTQNVEVVNEESQIIENDVVTAEVPATKTLKRRYRNKKSNKKGAANTATDT
AKNADS"
misc_feature 329987..>330121
/locus_tag="A1E_01475"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(330026..330028,330056..330058,330086..330088,
330092..330094)
/locus_tag="A1E_01475"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature <330368..330490
/locus_tag="A1E_01475"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature 330476..331294
/locus_tag="A1E_01475"
/note="Ribonuclease E/G family; Region: RNase_E_G;
pfam10150"
/db_xref="CDD:150783"
gene 332200..333171
/locus_tag="A1E_01480"
/db_xref="GeneID:5626220"
CDS 332200..333171
/locus_tag="A1E_01480"
/note="COG1612 Uncharacterized protein required for
cytochrome oxidase assembly"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase assembly protein"
/protein_id="YP_001492026.1"
/db_xref="GI:157803477"
/db_xref="GeneID:5626220"
/translation="MVIAMIVIGGITRLTGSGLSIVEWRPITGILPPLSFEAWQVEFA
KYKAFPEYNYVNYRMTLSQFKFIYLLEFIHRLLGRITALIYIVPLIYFYFKGIIKNRD
IAPYIIALLLLYVQGFMGWYMVKSGLLNNPSVSHLRLAFHLIIAVIIYHILFYQLIKN
RCDILLILSQTDLKLPLRFSSVAITVIYLQIFLGALVAGLDAGLIYNSFPLMGDNFIP
TAIKDNFFDLKNWYDPVFIQCIHRLGGYSVFLVVMALATYLLKIEHPKLNKIAYFLII
ALLMQISTGIITLLYSVPIIIASTHQFFAIVLLSVIIWCYFLIKTSK"
misc_feature 332200..333156
/locus_tag="A1E_01480"
/note="Uncharacterized protein required for cytochrome
oxidase assembly [Posttranslational modification, protein
turnover, chaperones]; Region: CtaA; COG1612"
/db_xref="CDD:31800"
misc_feature 332200..333141
/locus_tag="A1E_01480"
/note="Cytochrome oxidase assembly protein; Region:
COX15-CtaA; cl15852"
/db_xref="CDD:210252"
gene 333168..334079
/locus_tag="A1E_01485"
/db_xref="GeneID:5626221"
CDS 333168..334079
/locus_tag="A1E_01485"
/EC_number="4.2.1.70"
/note="COG0564 Pseudouridylate synthases, 23S
RNA-specific"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
C"
/protein_id="YP_001492027.1"
/db_xref="GI:157803478"
/db_xref="GeneID:5626221"
/translation="MIIDVNTPISSRLDKYLKRLYPLLTQGVIEKALRQKQIIVNARK
AEASLRVIDGDKIFISDKFNLPVKQPEKLVFTDAEIKLAKKITTDYLIYEDDNLIAIN
KPAGLATQGGSKINLSIDSALKYLNYKGADFKLVHRLDKETSGLLLIAKNYLSSIKFH
DAFKDKLVVKTYFAVTYGKPIKNVGEVRSNIEKSKGSTRKITDIDSENGKLAITYYKL
LKSLDNNLFLIEFTPITGKMHQLRLHAKLLGCPILGDDKYGNKEIMPYSQYMFLHANH
ICLSEKVFGTEINLEAKLPFYFTRRLT"
misc_feature 333171..334055
/locus_tag="A1E_01485"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature 333201..333392
/locus_tag="A1E_01485"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(333201..333203,333237..333242,333246..333251,
333255..333260,333267..333272,333276..333278,
333297..333302,333303..333317,333321..333323)
/locus_tag="A1E_01485"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 333459..334004
/locus_tag="A1E_01485"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(333576..333587,333891..333893)
/locus_tag="A1E_01485"
/note="active site"
/db_xref="CDD:211346"
gene 334241..335422
/locus_tag="A1E_01490"
/db_xref="GeneID:5626073"
CDS 334241..335422
/locus_tag="A1E_01490"
/note="COG1680 Beta-lactamase class C and other penicillin
binding proteins"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein 4*"
/protein_id="YP_001492028.1"
/db_xref="GI:157803479"
/db_xref="GeneID:5626073"
/translation="MIRRYLLLLLFLINNCINCFADIQQRINEAEKEYLSNRFLNAVF
MFADDYKPLLTGAKGIFALNGEQLKANEMMPIASATKPFTAAGILKLQEQELLNINDK
IYKYLDPEMWGGKVPDWAYKISIHNLLTHSSGIAEYFSFVKLDFNMSKKEIHKKILQF
VSSKPLEISIGKKFKYSNTNFVILGMIIEKVAKKDLGNFFYDEFFKPLNMKSTSFASY
SEAARIQKNVISSNYPVRYFLTPNNSNKPIFTPVTADFLAVPYADGGIISTPNDLVKW
YRALNDGKILSKKSYKLMTTKYFLAKDIDGRKSYMGYGIFLTDLDSKHLMIHYTGKAL
GIQSEVGYVLPNNLYFAILSNTMIKIPEAEKDKIDMKNPLNQLGIIYFRDAIIGAAIK
N"
misc_feature 334301..335386
/locus_tag="A1E_01490"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:31866"
misc_feature 334319..335338
/locus_tag="A1E_01490"
/note="Beta-lactamase; Region: Beta-lactamase; pfam00144"
/db_xref="CDD:201034"
gene 335423..336244
/locus_tag="A1E_01495"
/db_xref="GeneID:5626074"
CDS 335423..336244
/locus_tag="A1E_01495"
/EC_number="3.1.11.2"
/note="COG0708 Exonuclease III"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease III"
/protein_id="YP_001492029.1"
/db_xref="GI:157803480"
/db_xref="GeneID:5626074"
/translation="MKIVTWNINSLRLRIDLLRKLAHEHKPDIILLQETKVADSLFPL
EVIKNIGYEHIIYSGQKSYNGVAIISKFPLNNVFSLELYNSDKRHIAATVNDIEVHNF
YVPAGGDIPDIEINLKFKHKLEYVRLMQEWLTVNRTKNDKIIIVGDLNIAPHEHDVWS
SRQLRNVISHTDIERSLLVGLQNSLGFIDSSRHFISLDEKFYTWWSYRNIDWKKSNRG
RRLDHIWVSNNLKDALFSINLLSEARDWVPPSDHVPYFVNFNFDGVMPRACNRIQ"
misc_feature 335423..336199
/locus_tag="A1E_01495"
/note="Escherichia coli exonuclease III (ExoIII) and
Neisseria meningitides NExo-like subfamily of the ExoIII
family purinic/apyrimidinic (AP) endonucleases; Region:
ExoIII-like_AP-endo; cd09086"
/db_xref="CDD:197320"
misc_feature order(335441..335443,335522..335524,335729..335731,
335738..335740,335864..335866,335870..335872,
336176..336178)
/locus_tag="A1E_01495"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197320"
misc_feature order(335441..335443,335522..335524,335729..335731,
335864..335866,335870..335872,336086..336088,
336173..336178)
/locus_tag="A1E_01495"
/note="putative catalytic site [active]"
/db_xref="CDD:197320"
misc_feature order(335447..335452,335456..335464,335522..335524,
335603..335608,335729..335731,335738..335740,
335744..335746,335774..335776,335864..335866,
335870..335872,336032..336034,336041..336046,
336077..336079,336083..336088,336164..336169,
336176..336178)
/locus_tag="A1E_01495"
/note="active site"
/db_xref="CDD:197320"
misc_feature order(335447..335449,335522..335524,336173..336178)
/locus_tag="A1E_01495"
/note="metal binding site A [ion binding]; metal-binding
site"
/db_xref="CDD:197320"
misc_feature order(335447..335452,335456..335464,335603..335608,
335729..335731,335738..335740,335744..335746,
335774..335776,336041..336046,336164..336169)
/locus_tag="A1E_01495"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:197320"
misc_feature order(335729..335731,335738..335740,335864..335866,
335870..335872,336032..336034,336077..336079,
336083..336085,336176..336178)
/locus_tag="A1E_01495"
/note="putative AP binding site [nucleotide binding];
other site"
/db_xref="CDD:197320"
misc_feature order(335729..335731,335864..335866,335870..335872,
336176..336178)
/locus_tag="A1E_01495"
/note="putative metal binding site B [ion binding]; other
site"
/db_xref="CDD:197320"
gene 336312..337301
/gene="lpxC"
/locus_tag="A1E_01500"
/db_xref="GeneID:5626075"
CDS 336312..337301
/gene="lpxC"
/locus_tag="A1E_01500"
/note="COG1071 Pyruvate/2-oxoglutarate dehydrogenase
complex, dehydrogenase (E1) component, eukaryotic type,
alpha subunit"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase"
/protein_id="YP_001492030.1"
/db_xref="GI:157803481"
/db_xref="GeneID:5626075"
/translation="MDIKLGKYKPIKEEYIKSFKNMILLRRFEEKCSQLYGMGEIGGF
CHLYIGQEAVISAVDIVKKKGDSTITSYRDHAHVILAGTEPKYVLAELMGRATGCSKG
KGGSMHLFDVPNKFYGGHGIVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQV
YEAFNMAALWGLAVVYIIENNEYSMGTSVVRSTFMRDLYKKGESFGIKGFQLDGMNFE
EMYDGTKQAAEYVRETSQPLILEVKTYRYRGHSMSDPAKYRSKEEVEQYKKRDPLVII
RKTILDDKYATEADLKEIEQSVKEILKEAVEFSENSPLPDEGELYTNIFHTMV"
misc_feature 336345..337289
/gene="lpxC"
/locus_tag="A1E_01500"
/note="pyruvate dehydrogenase E1 component, alpha subunit;
Region: PDH_E1_alph_y; TIGR03182"
/db_xref="CDD:188297"
misc_feature 336366..337235
/gene="lpxC"
/locus_tag="A1E_01500"
/note="Thiamine pyrophosphate (TPP) family, E1 of
PDC_ADC_BCADC subfamily, TPP-binding module; composed of
proteins similar to the E1 components of the human
pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain...;
Region: TPP_E1_PDC_ADC_BCADC; cd02000"
/db_xref="CDD:48163"
misc_feature order(336435..336437,336591..336593,336672..336677,
336768..336770,336774..336785,336792..336794,
336804..336806,336816..336818,336861..336872,
336912..336914,336927..336929,337080..337082)
/gene="lpxC"
/locus_tag="A1E_01500"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(336525..336530,336672..336674,336678..336680,
336762..336773,336852..336854,336858..336860,
337059..337061)
/gene="lpxC"
/locus_tag="A1E_01500"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48163"
misc_feature order(336657..336659,336663..336665,336669..336671,
336684..336686,336693..336698,336705..336710,
336714..336719,336726..336728,336783..336788,
336804..336809,336816..336818)
/gene="lpxC"
/locus_tag="A1E_01500"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(337044..337064,337068..337070,337071..337097,
337119..337127)
/gene="lpxC"
/locus_tag="A1E_01500"
/note="phosphorylation loop region [posttranslational
modification]"
/db_xref="CDD:48163"
gene 337430..338416
/locus_tag="A1E_01505"
/db_xref="GeneID:5626076"
CDS 337430..338416
/locus_tag="A1E_01505"
/note="catalyzes the oxidative decarboxylation of pyruvate
with concomitant acetylation of a lipoic acid-containing
dihydrolipoamide acyltransferase within the complex. The
pyruvate dehydrogenase complex catalyzes the overall
conversion of pyruvate to acetyl-CoA and CO(2); it
contains multiple copies of three enzymatic components:
pyruvate dehydrogenase (E1), dihydrolipoamide
acetyltransferase (E2) and lipoamide dehydrogenase"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase subunit beta"
/protein_id="YP_001492031.1"
/db_xref="GI:157803482"
/db_xref="GeneID:5626076"
/translation="MQITVREALRDAMQEEMIRDDKVFIMGEEVAEYQGAYKVTQGLL
EQFGPKRVIDTPITEYGFAGLAVGAALAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHY
MSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYNAEDHKGLMITA
IRDDNPIIFLENEILYGHSFDVPEETIEPIPFGKAKTLIEGNSVTIVTFSIQVKLALD
AANVLQNDNNIDCEVIDLRTIKPLDTQTIIESVKKTNRLVVVEEGWFFAGVGASIASI
VMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLALPSESDIIEAVKKVCYYSV"
misc_feature 337430..338413
/locus_tag="A1E_01505"
/note="pyruvate dehydrogenase subunit beta; Validated;
Region: PRK09212"
/db_xref="CDD:169719"
misc_feature 337448..337948
/locus_tag="A1E_01505"
/note="Pyrimidine (PYR) binding domain of the beta
subunits of the E1 components of human pyruvate
dehydrogenase complex (E1- PDHc) and related proteins;
Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
/db_xref="CDD:132919"
misc_feature order(337490..337492,337496..337498,337514..337516,
337580..337582,337589..337591,337595..337612,
337619..337624,337628..337636,337691..337693,
337700..337705,337730..337735,337799..337801,
337808..337810,337853..337858,337919..337924)
/locus_tag="A1E_01505"
/note="alpha subunit interface [polypeptide binding];
other site"
/db_xref="CDD:132919"
misc_feature order(337511..337513,337598..337600,337604..337606,
337682..337684,337691..337693)
/locus_tag="A1E_01505"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132919"
misc_feature order(337514..337516,337589..337591,337595..337606,
337688..337693,337697..337699,337712..337714,
337724..337726,337733..337735,337799..337801,
337805..337810,337832..337834,337838..337843,
337847..337849)
/locus_tag="A1E_01505"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:132919"
misc_feature 338006..338362
/locus_tag="A1E_01505"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene complement(338639..340483)
/locus_tag="A1E_01510"
/db_xref="GeneID:5626077"
CDS complement(338639..340483)
/locus_tag="A1E_01510"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_001492032.1"
/db_xref="GI:157803483"
/db_xref="GeneID:5626077"
/translation="MRILKMQSIRNIAIIAHVDHGKTTLVDNMLKQSGTFRANQAVAE
RAMDSNDLERERGITILAKCTALMWNDIRINIVDTPGHADFGGEVERILSMVDGVVLL
VDASEGPMPQTKFVLSKALNLSLKPIVVINKIDRDDQRIKEVIDDVFELFVALEANND
QLDFPIVYASGRAGRAALTFDDKINPLDNLADDLSPLFDLIVTHVPTPVADDKAPFSM
LVTTREYNSFFGRVLTGRVQSGTVKINQNVKVLNRENKVLENGRITKILAFRGLERIA
IDEATAGDIIAMAGLENANVADTICSPEVTQAIPSLPIDPPTLSITFSVNDSPLAGSE
GTKVTSSLIGNRLMRELESNVALKVTEAAEKNTFQVAGRGELQLGILIETMRREGFEL
SISRPEVLFQTDENGNKQEPMEEIQVDVDDDYVGVVVKSLALRKAEMTDMRPSGGGKT
RVTFIGPSRGLIGYHSQFLTETRGTGIINRIFHGYADYKGNIEGRRNGVLISNSDGEA
VAYALWNLEARGKMFIKPSDKVYRGMIIGEHNRDNDLEVNPLKAKQLSNVRAAGKDEA
IRLTPPMLLTLEQAISYIQDDERVEVTPKSIRLRKALLDPNDRKRAVK"
misc_feature complement(339860..340462)
/locus_tag="A1E_01510"
/note="Tyrosine phosphorylated protein A (TypA)/BipA
family belongs to ribosome-binding GTPases; Region:
TypA_BipA; cd01891"
/db_xref="CDD:206678"
misc_feature complement(338651..340459)
/locus_tag="A1E_01510"
/note="GTP-binding protein TypA/BipA; Region: TypA_BipA;
TIGR01394"
/db_xref="CDD:162336"
misc_feature complement(340415..340438)
/locus_tag="A1E_01510"
/note="G1 box; other site"
/db_xref="CDD:206678"
misc_feature complement(order(340043..340045,340055..340057,
340163..340168,340235..340240,340292..340297,
340391..340396,340403..340405,340412..340417,
340427..340429,340433..340435))
/locus_tag="A1E_01510"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206678"
misc_feature complement(order(339968..339976,340079..340081,
340085..340090,340412..340429))
/locus_tag="A1E_01510"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206678"
misc_feature complement(340295..340330)
/locus_tag="A1E_01510"
/note="Switch I region; other site"
/db_xref="CDD:206678"
misc_feature complement(340307..340309)
/locus_tag="A1E_01510"
/note="G2 box; other site"
/db_xref="CDD:206678"
misc_feature complement(340241..340252)
/locus_tag="A1E_01510"
/note="G3 box; other site"
/db_xref="CDD:206678"
misc_feature complement(340190..340246)
/locus_tag="A1E_01510"
/note="Switch II region; other site"
/db_xref="CDD:206678"
misc_feature complement(340079..340090)
/locus_tag="A1E_01510"
/note="G4 box; other site"
/db_xref="CDD:206678"
misc_feature complement(339968..339976)
/locus_tag="A1E_01510"
/note="G5 box; other site"
/db_xref="CDD:206678"
misc_feature complement(339578..339838)
/locus_tag="A1E_01510"
/note="BipA_TypA_II: domain II of BipA (also called TypA)
having homology to domain II of the elongation factors
(EFs) EF-G and EF-Tu. BipA is a highly conserved protein
with global regulatory properties in Escherichia coli.
BipA is phosphorylated on a...; Region: BipA_TypA_II;
cd03691"
/db_xref="CDD:58082"
misc_feature complement(339017..339253)
/locus_tag="A1E_01510"
/note="BipA_TypA_C: a C-terminal portion of BipA or TypA
having homology to the C terminal domains of the
elongation factors EF-G and EF-2. A member of the ribosome
binding GTPase superfamily, BipA is widely distributed in
bacteria and plants. BipA is a highly...; Region:
BipA_TypA_C; cd03710"
/db_xref="CDD:58063"
gene 340784..340918
/locus_tag="A1E_01515"
/db_xref="GeneID:5626845"
CDS 340784..340918
/locus_tag="A1E_01515"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492033.1"
/db_xref="GI:157803484"
/db_xref="GeneID:5626845"
/translation="MTSFKYYIIIRYNIAIASFNAYHDAVKYVLEQLLGEQMVKNILE
"
gene 340987..341250
/locus_tag="A1E_01520"
/db_xref="GeneID:5626846"
CDS 340987..341250
/locus_tag="A1E_01520"
/note="COG1217 Predicted membrane GTPase involved in
stress response"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492034.1"
/db_xref="GI:157803485"
/db_xref="GeneID:5626846"
/translation="MLQTNYKIQAVWVKKDDKDYIQEACNFLYDFNEKHEIYVELEDP
ATEIYDKNSICFSQEEINTIPFEPFSSGYDSDGEYTTMGVGMC"
gene 341499..342005
/locus_tag="A1E_01525"
/db_xref="GeneID:5626847"
CDS 341499..342005
/locus_tag="A1E_01525"
/EC_number="1.2.4.1"
/note="COG2825 Outer membrane protein"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase subunit beta"
/protein_id="YP_001492035.1"
/db_xref="GI:157803486"
/db_xref="GeneID:5626847"
/translation="MITEAQNVPIKEDNFKVRVAVADVQSILEGSIAIKDLRNKIEKL
NHKIQEDIAAKEAEFKPLEEQLLNERSNLSETEFEHKVNEFNAKVSHVRKEIQIKKTK
LEQAHAEAMSRVHGTTITIISELAEKYNLNLVIPSAQVLYAKNNLNITSEVTFMLNER
LKEVTINY"
misc_feature 341553..341972
/locus_tag="A1E_01525"
/note="Outer membrane protein (OmpH-like); Region: OmpH;
smart00935"
/db_xref="CDD:198003"
gene 342140..343606
/locus_tag="A1E_01530"
/db_xref="GeneID:5626848"
CDS 342140..343606
/locus_tag="A1E_01530"
/EC_number="1.1.1.41"
/note="catalyzes the formation of 2-oxoglutarate from
isocitrate"
/codon_start=1
/transl_table=11
/product="isocitrate dehydrogenase"
/protein_id="YP_001492036.1"
/db_xref="GI:157803487"
/db_xref="GeneID:5626848"
/translation="MSVFNMAEFTPITIAYGDGIGPEIMEAVLYILREAEARIRLETI
EIGEKLYKKHYTSGISEESWASIQRTGVILKAPITTPQGGGYKSLNVTIRKTLQLFAN
IRPSVSFYPFTRTLHPNLNLTIIRENEEDLYAGIEYRQTHNMYESVKLISHTGCEKII
RYAFEYAVKNNRKKVTCLSKDNIMKFSDGIFHKVFNEIAKEYLQINNEHYIIDIGVAR
LATKPEMFDVIVTSNLYGDIISDVAAEISGSVGLAGSANVGQHYAMFEAVHGSAPDIA
GQDIANPSGLLNAAIMMLVHIGQCDVASLIENAWKKTIEDGIHTADIYNDQTSSKKVG
TKEFVEAVVKRLGQLPVELSKADYPLIAKKQESNIDYKIDTKEVKKLVGTDIFVNMNV
LSAHDIADKINKLDIGNFELKTISSKGLKLWPRDARFETVADHWCCRFMNKDGTEIKY
LDITRLLEALSKANITFIKVENLFEFDGVAGYSLAQGE"
misc_feature 342155..343603
/locus_tag="A1E_01530"
/note="isocitrate dehydrogenase; Validated; Region:
PRK09222"
/db_xref="CDD:181708"
misc_feature 342170..343186
/locus_tag="A1E_01530"
/note="Isocitrate/isopropylmalate dehydrogenase [Amino
acid transport and metabolism]; Region: LeuB; COG0473"
/db_xref="CDD:30821"
gene 343783..344064
/locus_tag="A1E_01535"
/db_xref="GeneID:5626849"
CDS 343783..344064
/locus_tag="A1E_01535"
/note="subunit G of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; in S. meliloti it is known to be involved
specifically with K+ transport"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
G"
/protein_id="YP_001492037.1"
/db_xref="GI:157803488"
/db_xref="GeneID:5626849"
/translation="MGILLVIIGLFAIFSGIIGFFRFSGFYPKLHAASVIESFGVPIC
LIGFACIKADIINFVKLILAALLILLLNPVATHALGKASLLSMSFPRKQ"
misc_feature <343861..344061
/locus_tag="A1E_01535"
/note="putative monovalent cation/H+ antiporter subunit G;
Reviewed; Region: PRK12674"
/db_xref="CDD:183672"
gene 344228..345277
/locus_tag="A1E_01540"
/db_xref="GeneID:5626877"
CDS 344228..345277
/locus_tag="A1E_01540"
/note="subunit B of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
B"
/protein_id="YP_001492038.1"
/db_xref="GI:157803489"
/db_xref="GeneID:5626877"
/translation="MNIALNFNLSNYLLNLIAFLLILISIKIIFAKDLLNAVIASSVF
SLLIGISYLIMDAPDVAMTEAALGACLSTCVYLNLLCTLPPDLKNIENTNIIPASLIC
LVFVIILTYMGLELPNYGDDNAPLHMHSSKYYIENTTNDIGIPSLVAAILASYRGYDT
LGETSVILIAGIAVLLVFSKKFEGDDVSKDVIPQLDRGIRKNINWMPWRDYGMTKIIK
YITSFIIPYIILYSIYIQLNGESSPGGGFQAGVIFVSSFIAYDLVYGNQKLNRYFSPN
VLIYIAILGVAIYVIVGTISLFFNDNYLNYYSLTNFINDKLLAQHIGIFIVEIVIGVT
VAAIMYLIYNLFNHE"
misc_feature 344324..345274
/locus_tag="A1E_01540"
/note="putative monovalent cation/H+ antiporter subunit B;
Reviewed; Region: PRK12507"
/db_xref="CDD:183562"
misc_feature <344324..344494
/locus_tag="A1E_01540"
/note="Predicted subunit of the Multisubunit Na+/H+
antiporter [Inorganic ion transport and metabolism];
Region: COG1563"
/db_xref="CDD:31751"
misc_feature 344873..345256
/locus_tag="A1E_01540"
/note="Domain of unknown function (DUF4040); Region:
DUF4040; cl00676"
/db_xref="CDD:207161"
gene 345270..345917
/locus_tag="A1E_01545"
/db_xref="GeneID:5626878"
CDS 345270..345917
/locus_tag="A1E_01545"
/codon_start=1
/transl_table=11
/product="Heme exporter protein B"
/protein_id="YP_001492039.1"
/db_xref="GI:157803490"
/db_xref="GeneID:5626878"
/translation="MNNLFVLIKREFIVQNRINNIIKYLVIFCLFCIISTVLVNSERD
INKFGLIFSVICLLISLINFSSIIFKSDLEDGSLELLLSIVSYEEIILAKFFAIFISS
TVGLVFILPIIYIFFDQTLLEIIFFFMSVWLMLGLSSSLVVLSGSVQCYFKKNANFVG
TFIMPLLIPDIIMTGLILQDNNLQLIFIMIGINLVFLPISFFLSSYLIKNIYNIT"
gene 345992..346393
/locus_tag="A1E_01550"
/db_xref="GeneID:5626879"
CDS 345992..346393
/locus_tag="A1E_01550"
/note="COG1563 Predicted subunit of the Multisubunit
Na+/H+ antiporter"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492040.1"
/db_xref="GI:157803491"
/db_xref="GeneID:5626879"
/translation="MWQALRRLIAANPMGFFLWSIITKWYLIITVASLITLYYTVLGL
KKIGFIDYFTKTMVEILDVSKAVAQNCTTKLGPDWNHLVSFWNCLSEPGEYQYEERIG
AKELEDAINKLRPKQVDSVADAEHPIINPYE"
misc_feature 345992..346390
/locus_tag="A1E_01550"
/note="Protein of unknown function (DUF2670); Region:
DUF2670; pfam10875"
/db_xref="CDD:151324"
gene 346466..346999
/locus_tag="A1E_01555"
/db_xref="GeneID:5626880"
CDS 346466..346999
/locus_tag="A1E_01555"
/note="COG0723 Rieske Fe-S protein"
/codon_start=1
/transl_table=11
/product="ubiquinol-cytochrome c reductase, iron-sulfur
subunit"
/protein_id="YP_001492041.1"
/db_xref="GI:157803492"
/db_xref="GeneID:5626880"
/translation="MSDTEDNKNKQTTRRDFMVLTASSVAVVGAACALLPLIDSLNPS
ADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAAARAVKMSELIDPETD
EARIKAGYDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLN
LAVPPYTFISDKKIRIG"
misc_feature 346502..346996
/locus_tag="A1E_01555"
/note="ubiquinol-cytochrome c reductase, iron-sulfur
subunit; Region: Rieske_proteo; TIGR01416"
/db_xref="CDD:188138"
misc_feature 346619..346996
/locus_tag="A1E_01555"
/note="Iron-sulfur protein (ISP) component of the bc(1)
complex family, Rieske domain; The Rieske domain is a
[2Fe-2S] cluster binding domain involved in electron
transfer. The bc(1) complex is a multisubunit enzyme found
in many different organisms including...; Region:
Rieske_cytochrome_bc1; cd03470"
/db_xref="CDD:58540"
misc_feature order(346823..346825,346829..346834,346880..346882,
346889..346891,346895..346897)
/locus_tag="A1E_01555"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58540"
gene 347008..348204
/locus_tag="A1E_01560"
/db_xref="GeneID:5626881"
CDS 347008..348204
/locus_tag="A1E_01560"
/note="COG1290 Cytochrome b subunit of the bc complex"
/codon_start=1
/transl_table=11
/product="cytochrome b"
/protein_id="YP_001492042.1"
/db_xref="GI:157803493"
/db_xref="GeneID:5626881"
/translation="MNEDITTKKSNAIIEWIDYRLPIFSFLKHFSHYQTPKNLSYLWN
LGSIAGIALVIQIITGVVLAMHYTPHVDHAFDSVERIMRNVNYGWLLRYTHAVGASMF
FAAVYLHIARGLYYGSYKTPRELLWHIGIIIFLTMMATAFMGYVLPWGQMSYWGATVI
TNLFSAIPLIGESIVTWLWGGFSVDNPTLNRFFSLHYLLPFIIVALVMLHLVALHQHG
SNNPKGIDVKSSQDTIPFHPYYTVKDFVGFGVYFMIFAYFIFYAPNYLGHPDNYIQAN
PLVTPAHIVPEWYFLPFYAILRAVPSKLGGVLLMFGSIFVLFLLPWLDTSKVRSSNYR
PIYRIAFWIFMADCLLLGYLGGQPVEEPYIIISRFAACYYFFHFLVAVPLIGKYEKPL
PLPEQL"
misc_feature 347068..347667
/locus_tag="A1E_01560"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cd00284"
/db_xref="CDD:29347"
misc_feature 347071..348159
/locus_tag="A1E_01560"
/note="cytochrome b; Provisional; Region: CYTB; MTH00191"
/db_xref="CDD:177239"
misc_feature order(347092..347097,347146..347148,347155..347157,
347638..347640,347662..347664)
/locus_tag="A1E_01560"
/note="Qi binding site; other site"
/db_xref="CDD:29347"
misc_feature order(347095..347100,347110..347118,347134..347139,
347146..347151,347158..347160,347230..347232,
347275..347277,347284..347289,347296..347301,
347305..347310,347314..347319,347326..347328,
347347..347364,347374..347379,347386..347391,
347398..347400,347407..347412,347440..347442,
347452..347472,347482..347487,347509..347511,
347665..347667)
/locus_tag="A1E_01560"
/note="intrachain domain interface; other site"
/db_xref="CDD:29347"
misc_feature order(347098..347103,347107..347109,347116..347118,
347179..347181,347191..347193,347200..347205,
347230..347235,347242..347247,347254..347268,
347272..347280,347287..347289,347371..347373,
347650..347655)
/locus_tag="A1E_01560"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29347"
misc_feature order(347134..347136,347143..347148,347152..347157,
347311..347313,347323..347325,347332..347337,
347341..347343,347383..347388,347395..347400,
347404..347409,347626..347628,347635..347640,
347647..347649,347662..347667)
/locus_tag="A1E_01560"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(347164..347166,347173..347178,347185..347190,
347194..347199,347206..347208,347239..347241,
347281..347283,347290..347295,347302..347304,
347425..347430,347437..347442,347446..347451,
347593..347598,347605..347607)
/locus_tag="A1E_01560"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(347410..347412,347419..347424,347431..347436,
347473..347475,347482..347487,347497..347499,
347581..347583,347590..347592)
/locus_tag="A1E_01560"
/note="Qo binding site; other site"
/db_xref="CDD:29347"
misc_feature 347674..348117
/locus_tag="A1E_01560"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cd00290"
/db_xref="CDD:29371"
misc_feature order(347674..347682,347686..347712,347719..347727,
347731..347736,347743..347745,347752..347757,
347764..347766,347773..347778,347785..347790,
347794..347796,347812..347814,347821..347826,
347986..347991,348001..348003,348007..348009)
/locus_tag="A1E_01560"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29371"
misc_feature order(347674..347679,347692..347694,347701..347709,
347713..347715,347725..347727,347734..347739,
347746..347751,347758..347760,347770..347775,
347779..347787,347794..347796,347809..347811,
347815..347820,347824..347838,347842..347850,
347857..347859,347863..347874,347917..347919,
347947..347949,347956..347961,347965..347973,
347977..347979)
/locus_tag="A1E_01560"
/note="intrachain domain interface; other site"
/db_xref="CDD:29371"
misc_feature order(347713..347715,347737..347739)
/locus_tag="A1E_01560"
/note="Qi binding site; other site"
/db_xref="CDD:29371"
misc_feature order(347857..347859,347863..347868,347875..347877,
347884..347889,347935..347937)
/locus_tag="A1E_01560"
/note="Qo binding site; other site"
/db_xref="CDD:29371"
gene 348475..349143
/locus_tag="A1E_01565"
/db_xref="GeneID:5626722"
CDS 348475..349143
/locus_tag="A1E_01565"
/note="COG2857 Cytochrome c1"
/codon_start=1
/transl_table=11
/product="cytochrome c1, heme protein precursor"
/protein_id="YP_001492043.1"
/db_xref="GI:157803494"
/db_xref="GeneID:5626722"
/translation="MKWSFDGVFGTVKREAAQRGFQVYKEVCSVCHGLNNLYYRNLKD
IGFSDDEIKEIAKVYTVKDGPNDAGEMFDRPALPSDRFVTPYPNEQAARSANNGAYPP
DLSLIIKARHDGANYIYSLLTGYKEPPADFKLMQGTHYNPYFPSEQIAMPPPLTDGQV
TYMDGTNASVEQMSHDVTVFLQWAAEPEMEHRKAMGLKVMMFLVVFTIFFYIAKNRIW
SNLK"
misc_feature 348481..349137
/locus_tag="A1E_01565"
/note="Cytochrome C1 family; Region: Cytochrom_C1;
pfam02167"
/db_xref="CDD:190231"
gene 349815..350318
/locus_tag="A1E_01570"
/db_xref="GeneID:5626723"
CDS 349815..350318
/locus_tag="A1E_01570"
/note="COG0071 Molecular chaperone (small heat shock
protein)"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
B"
/protein_id="YP_001492044.1"
/db_xref="GI:157803495"
/db_xref="GeneID:5626723"
/translation="MLKNVRLYIPSIAAIILSSNIAMANKNYDAGHATALRQVADLID
NQMTNIDNLFRNRLSLYESNSIKSNFITKDKQYIVVMEVPGFEKSQIKVKVSRNKLFI
TGNIEEKNKSDDLDNYMNKNFNYVISLYEDVDQTNISSNLKNGILTIILPRTEVKEQD
AREIPIN"
misc_feature 349893..350315
/locus_tag="A1E_01570"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:30420"
misc_feature 350019..350273
/locus_tag="A1E_01570"
/note="Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins (Hsps).
sHsps are small stress induced proteins with monomeric
masses between 12 -43 kDa, whose common feature is the
Alpha-crystallin domain (ACD). sHsps are generally...;
Region: ACD_sHsps-like; cd06464"
/db_xref="CDD:107221"
misc_feature order(350019..350033,350052..350054,350058..350060,
350064..350069,350187..350189,350247..350252)
/locus_tag="A1E_01570"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107221"
gene complement(350444..351496)
/gene="prfB"
/locus_tag="A1E_01575"
/db_xref="GeneID:5626724"
CDS complement(350444..351496)
/gene="prfB"
/locus_tag="A1E_01575"
/note="recognizes the termination signals UGA and UAA
during protein translation a specificity which is
dependent on amino acid residues residing in loops of the
L-shaped tRNA-like molecule of RF2; in some organisms
control of PrfB protein levels is maintained through a +1
ribosomal frameshifting mechanism; this protein is similar
to release factor 1"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_001492045.1"
/db_xref="GI:157803496"
/db_xref="GeneID:5626724"
/translation="MRGLFDIKTATKRLKELAELTTNPDLWNDQVNAQTLLREKSTLE
EKLNTLNKLKSNLKDTLELEALAETENDLETLAQVKQDLKNLSIIAAKFETEYLFSGE
ADCNNCFLEINAGAGGTESHDWASIMMRMYLRFAERLDFKTEIINMINGEEAGIKSCT
IRIIGKRAYGWFKTEAGVHRLVRISPFNAAGKRMTSFASSWVYPEIDDNISITIDDKD
LRIDTFRASGAGGQHVNTTDSAVRITHIPTGTVTQCQSDRSQHKNKAQAMRMLKAKLY
ELEMQKRTDNINEQNAAKTDNSWGHQIRSYILQPYQMVKDLRTDYETSDTRGVLDGNL
EEFVSASLAMNAGSKR"
misc_feature complement(350450..351496)
/gene="prfB"
/locus_tag="A1E_01575"
/note="peptide chain release factor 2; Validated; Region:
prfB; PRK00578"
/db_xref="CDD:179072"
misc_feature complement(350972..351259)
/gene="prfB"
/locus_tag="A1E_01575"
/note="PCRF domain; Region: PCRF; pfam03462"
/db_xref="CDD:202648"
misc_feature complement(350543..350884)
/gene="prfB"
/locus_tag="A1E_01575"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 351834..353636
/locus_tag="A1E_01580"
/db_xref="GeneID:5626725"
CDS 351834..353636
/locus_tag="A1E_01580"
/note="binds to the ribosome on the universally-conserved
alpha-sarcin loop"
/codon_start=1
/transl_table=11
/product="GTP-binding protein LepA"
/protein_id="YP_001492046.1"
/db_xref="GI:157803497"
/db_xref="GeneID:5626725"
/translation="MNNQKYIRNFSIIAHIDHGKSTLADRLIEHCGGFQAREMSKQVL
DSMDIEKERGITIKAQTVKLLYKAKDGNTYYLNLMDTPGHVDFAYEVSRSLAACEGSL
LVVDSTQGVEAQTLANVYKAIENNHEIVPVLNKIDLPASEPEHVKQQIEDIIGIDASE
ALLISAKSGIGIDLVLEAIVNKLPPPKESSDDILKALLVDSWYDPYLGVVILVRIIDG
ALRKNMRIKMMATNSVYKVEHVGYFTPKKHIADVLYAGEIGFFTASIKQVADCKVGDT
ITDEKKPCEQALPGFKPNLPVVFCGFYPTDSSEFEYLKDSLAKLHLNDSSFEYEMESS
SALGVGFRCGFLGLLHLEIIQERLSREFDLDLITTAPSVIYKIYMRDGESLEIYNPAD
LPNLQKIESIEEPWIKAIIIVPDEFLGAVLSLCTEKRGVQLDHSYIANRARIVYKLPL
NEIVYDFYDRLKSCSKGYASFEWQMDVYAPSELVKLGILVNGKAVDALSTIVHRSRAE
QTGRALCVRLKDLIPIQQIDIVIQASIGSRIIARETIKALRKDVLSKCYGGDITRKRK
LLEKQKIGKKRMRQYGNIEIPQSAFIAALKIGDE"
misc_feature 351834..353633
/locus_tag="A1E_01580"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:180078"
misc_feature 351855..352391
/locus_tag="A1E_01580"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature 351873..351896
/locus_tag="A1E_01580"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature order(351876..351878,351882..351884,351894..351899,
351906..351908,351915..351920,352011..352016,
352083..352088,352155..352160,352266..352268,
352278..352280)
/locus_tag="A1E_01580"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature order(351882..351899,352233..352238,352242..352244,
352326..352334)
/locus_tag="A1E_01580"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature 351978..352013
/locus_tag="A1E_01580"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature 351999..352001
/locus_tag="A1E_01580"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature 352071..352082
/locus_tag="A1E_01580"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature 352077..352133
/locus_tag="A1E_01580"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature 352233..352244
/locus_tag="A1E_01580"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature 352326..352334
/locus_tag="A1E_01580"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature 352413..352670
/locus_tag="A1E_01580"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:58090"
misc_feature 353043..353279
/locus_tag="A1E_01580"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:58062"
misc_feature 353301..353624
/locus_tag="A1E_01580"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene 353735..353809
/locus_tag="A1E_t05698"
/db_xref="GeneID:5626726"
tRNA 353735..353809
/locus_tag="A1E_t05698"
/product="tRNA-Asn"
/db_xref="GeneID:5626726"
gene 354301..354540
/locus_tag="A1E_01585"
/db_xref="GeneID:5626259"
CDS 354301..354540
/locus_tag="A1E_01585"
/note="COG0481 Membrane GTPase LepA"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492047.1"
/db_xref="GI:157803498"
/db_xref="GeneID:5626259"
/translation="MDNQEEEILTSESYIDEEEEKHLKAKNARTELKLILITFTIILT
SFLTFTYFFLNYVEEKAAEYKLQQEQEAKAANKPK"
gene complement(356372..357040)
/locus_tag="A1E_01590"
/db_xref="GeneID:5626260"
CDS complement(356372..357040)
/locus_tag="A1E_01590"
/note="COG0593 ATPase involved in DNA replication
initiation"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492048.1"
/db_xref="GI:157803499"
/db_xref="GeneID:5626260"
/translation="MQQYIFRFTTPNKYHPDEFIVSSSNDQAYNIIQNWQHRFGVNPY
KFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEQYNAFIIEDIENWQEPA
LLYIFNIINEKRKYLLLTSFDKSKNFALPDLSSRIKSVLSIVLNSPDDELIKVLIFKH
FSISSVIISRQIIDFLLVNLPREHSKIIEILENINQIALTSKRKITTSLVKEVLNKYS
HTIL"
misc_feature complement(<356390..357040)
/locus_tag="A1E_01590"
/note="ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair]; Region: DnaA;
COG0593"
/db_xref="CDD:30938"
misc_feature complement(356396..357037)
/locus_tag="A1E_01590"
/note="hypothetical protein; Validated; Region: PRK06620"
/db_xref="CDD:168630"
gene complement(357249..358304)
/locus_tag="A1E_01595"
/db_xref="GeneID:5626261"
CDS complement(357249..358304)
/locus_tag="A1E_01595"
/note="COG0628 Predicted permease"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492049.1"
/db_xref="GI:157803500"
/db_xref="GeneID:5626261"
/translation="MSKTAILWLVFLGIFISGFMLISDAVKPFFIAFIISYLLQPTIN
FIASKFKISNKFASSIIYLIFLNIFFLSLTILVPIIYGQIFTFIHNIPKYKNYFQGEI
LPPIMVKIYSIEPDIAYKIKDSLSNFINSIFTILSSIANNLWRYTIITINIFVLLLLI
PIILFYFLRDWNNIIENMKSLLPIKSRNKILEIISEINDLLSAYIRGQLNICLLLSTY
YSIAFTVIGIDLALLLGILTGFLVIIPFIGTFIAFLLTLIIGYVTFSMTAKLLYIMMI
YLVGNICESYVLTPKIIGDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILL
LNLITFYKFSKFYRLEG"
misc_feature complement(357375..358292)
/locus_tag="A1E_01595"
/note="pheromone autoinducer 2 transporter; Reviewed;
Region: tqsA; cl00465"
/db_xref="CDD:207060"
misc_feature complement(357363..358289)
/locus_tag="A1E_01595"
/note="Domain of unknown function DUF20; Region: UPF0118;
pfam01594"
/db_xref="CDD:201878"
gene complement(358306..358845)
/locus_tag="A1E_01600"
/db_xref="GeneID:5626262"
CDS complement(358306..358845)
/locus_tag="A1E_01600"
/note="with DnaK and DnaJ acts in response to hyperosmotic
and heat shock by preventing the aggregation of
stress-denatured proteins; may act as a thermosensor"
/codon_start=1
/transl_table=11
/product="heat shock protein GrpE"
/protein_id="YP_001492050.1"
/db_xref="GI:157803501"
/db_xref="GeneID:5626262"
/translation="MTDNNIENNEEEIRKAPSANDREELTELKAQIEELKDKLIRTTA
EIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLARALAHTPAKLDVEVINIIEGVQ
MTKDELDKIFHKHHIEEIKPEIGSMFDYNLHNAISQIDNTKYAPNSVITVMQSGYKIK
DRLLRPATVQVTKKPKQEE"
misc_feature complement(358327..358803)
/locus_tag="A1E_01600"
/note="GrpE; Region: GrpE; pfam01025"
/db_xref="CDD:201556"
misc_feature complement(358333..358752)
/locus_tag="A1E_01600"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cd00446"
/db_xref="CDD:73207"
misc_feature complement(order(358501..358503,358534..358536,
358543..358545,358600..358602,358612..358614,
358633..358635,358642..358644,358654..358656,
358696..358701,358708..358710,358720..358722,
358729..358734,358741..358746))
/locus_tag="A1E_01600"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73207"
misc_feature complement(order(358348..358350,358360..358362,
358387..358389,358435..358449,358456..358458,
358693..358695))
/locus_tag="A1E_01600"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:73207"
gene 358922..359641
/gene="rph"
/locus_tag="A1E_01605"
/db_xref="GeneID:5626465"
CDS 358922..359641
/gene="rph"
/locus_tag="A1E_01605"
/note="RNase PH; tRNA nucleotidyltransferase; forms
hexamers in Bacillus subtilis; phosphoroltic 3'-5'
exoribonuclease; involved in maturation of tRNA precursors
and removes terminal nucleotides near CCA acceptor arms of
mature tRNAs"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="YP_001492051.1"
/db_xref="GI:157803502"
/db_xref="GeneID:5626465"
/translation="MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCE
TTVPPFLRGQNQGWVTAEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVI
DLKKLGERQIIIDCDVINADGGTRTAAITGSYIALHLAIRLLMKKSILKVNPLISQIA
AISCGIYKGETILDLDYLEDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAML
KLAKVGAAELFKLQNQVLLGS"
misc_feature 358922..359629
/gene="rph"
/locus_tag="A1E_01605"
/note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
/db_xref="CDD:178914"
misc_feature 358949..359629
/gene="rph"
/locus_tag="A1E_01605"
/note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
/db_xref="CDD:206767"
misc_feature order(358979..358993,359021..359023,359027..359029,
359033..359035,359039..359041,359045..359047,
359105..359107,359111..359113,359117..359134,
359138..359140,359147..359152,359174..359179,
359183..359188,359195..359197,359207..359209,
359216..359218,359258..359260,359264..359266,
359270..359272,359276..359284,359507..359521,
359525..359527,359531..359548,359552..359554,
359561..359566,359573..359578,359585..359587)
/gene="rph"
/locus_tag="A1E_01605"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:206767"
misc_feature order(359114..359116,359177..359179,359282..359299,
359459..359461,359477..359479)
/gene="rph"
/locus_tag="A1E_01605"
/note="active site"
/db_xref="CDD:206767"
gene 360130..360339
/gene="rph"
/locus_tag="A1E_01610"
/db_xref="GeneID:5626466"
CDS 360130..360339
/gene="rph"
/locus_tag="A1E_01610"
/EC_number="2.7.7.56"
/note="COG1215 Glycosyltransferases, probably involved in
cell wall biogenesis"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="YP_001492052.1"
/db_xref="GI:157803503"
/db_xref="GeneID:5626466"
/translation="MIKEIALYNLLSYSYVIFVLKSLPGTKPKALNDALEYLRGEYLV
VYDAEDNPESDQLLKDLAMFRNLPS"
misc_feature 360130..>360336
/gene="rph"
/locus_tag="A1E_01610"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
gene 361264..361551
/gene="groES"
/locus_tag="A1E_01615"
/db_xref="GeneID:5626467"
CDS 361264..361551
/gene="groES"
/locus_tag="A1E_01615"
/note="10 kDa chaperonin; Cpn10; GroES; forms
homoheptameric ring; binds to one or both ends of the
GroEL double barrel in the presence of adenine nucleotides
capping it; folding of unfolded substrates initiates in a
GroEL-substrate bound and capped by GroES; release of the
folded substrate is dependent on ATP binding and
hydrolysis in the trans ring"
/codon_start=1
/transl_table=11
/product="co-chaperonin GroES"
/protein_id="YP_001492053.1"
/db_xref="GI:157803504"
/db_xref="GeneID:5626467"
/translation="MSFKPLHDRIAIKPIEHEEKTKGGIIIPDTAKEKPMQGIITAVG
TGTRNEKGEVYPLELKVGDKVLYGKWAGTEIEIKGEKLIVMKENDVLGIIN"
misc_feature 361267..361545
/gene="groES"
/locus_tag="A1E_01615"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:73192"
misc_feature order(361267..361269,361273..361275,361279..361281,
361288..361290,361369..361374,361435..361437,
361465..361467,361480..361482,361486..361488,
361534..361542)
/gene="groES"
/locus_tag="A1E_01615"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:73192"
misc_feature 361315..361356
/gene="groES"
/locus_tag="A1E_01615"
/note="mobile loop; other site"
/db_xref="CDD:73192"
misc_feature order(361396..361398,361429..361431)
/gene="groES"
/locus_tag="A1E_01615"
/note="roof hairpin; other site"
/db_xref="CDD:73192"
gene 361581..363224
/gene="groEL"
/locus_tag="A1E_01620"
/db_xref="GeneID:5626468"
CDS 361581..363224
/gene="groEL"
/locus_tag="A1E_01620"
/note="60 kDa chaperone family; promotes refolding of
misfolded polypeptides especially under stressful
conditions; forms two stacked rings of heptamers to form a
barrel-shaped 14mer; ends can be capped by GroES;
misfolded proteins enter the barrel where they are
refolded when GroES binds; many bacteria have multiple
copies of the groEL gene which are active under different
environmental conditions; the B.japonicum protein in this
cluster is expressed constitutively; in Rhodobacter,
Corynebacterium and Rhizobium this protein is essential
for growth"
/codon_start=1
/transl_table=11
/product="chaperonin GroEL"
/protein_id="YP_001492054.1"
/db_xref="GI:157803505"
/db_xref="GeneID:5626468"
/translation="MATKLIKHGSEAREEMLKGVDILANAVKVTLGPKGRNVLIEQSF
GAPKITKDGVTVAKSIELKEKIRNAGAQLLKSAATKAAEVAGDGTTTATVLARALARE
GNKLVAAGYNPMDLKRGMDLAVNTVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGE
KIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP
FILLFEKKLSNLQPMLPILEAVVQSQRPLLIIAEDVEGEALATLVVNRLRGGLKVAAV
KAPGFGDRRKAMMEDIAILTKGELITEDLGMKLENVSIKSLGTAKRVTISKENTVIVD
GSGDKKSIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKER
KDRVEDALAATRAAVEEGVVAGGGVTLLHTSQILTKLKVENKDQQAGIEIVIEALKDP
LKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIQAGIIDPAKVVRTALQDA
ASVASLIITTETLIVDEPSKEEPMPMRGSGMGGMGGMDF"
misc_feature 361581..363173
/gene="groEL"
/locus_tag="A1E_01620"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12849"
/db_xref="CDD:183791"
misc_feature 361590..363152
/gene="groEL"
/locus_tag="A1E_01620"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:48161"
misc_feature order(361590..361592,361602..361604,361653..361655,
361686..361697,361701..361703,361716..361721,
361725..361727,361755..361757,361761..361763,
361785..361787,361797..361799,361806..361808,
362169..362171,362265..362267,362349..362351,
362730..362732,362736..362738,362955..362957,
363120..363122,363129..363149)
/gene="groEL"
/locus_tag="A1E_01620"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:48161"
misc_feature order(361671..361679,361839..361841,361851..361853,
362028..362030,362772..362774,362823..362825,
362940..362942,363060..363062,363066..363068)
/gene="groEL"
/locus_tag="A1E_01620"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:48161"
misc_feature order(361905..361907,362880..362882,362934..362936,
362961..362963,362967..362972,362979..362981)
/gene="groEL"
/locus_tag="A1E_01620"
/note="stacking interactions; other site"
/db_xref="CDD:48161"
misc_feature order(362001..362003,362136..362138,362157..362159,
362703..362705,362805..362810)
/gene="groEL"
/locus_tag="A1E_01620"
/note="hinge regions; other site"
/db_xref="CDD:48161"
gene 363625..364005
/locus_tag="A1E_01625"
/db_xref="GeneID:5626469"
CDS 363625..364005
/locus_tag="A1E_01625"
/note="COG0317 Guanosine polyphosphate
pyrophosphohydrolases/synthetases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492055.1"
/db_xref="GI:157803506"
/db_xref="GeneID:5626469"
/translation="MNHNLSKHDITAQITGRIKHPISILYKLYRKGIKLEELTDIFAI
RIVVIDEEKCYKALKVVHNLYEYEKDKFKNYILNPKPNGYQSLHTIIITEDNYKIEIQ
IRDHKMHYHAESGEAAHWKYKNSF"
misc_feature <363637..>363993
/locus_tag="A1E_01625"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:30665"
misc_feature 363637..363963
/locus_tag="A1E_01625"
/note="Nucleotidyltransferase (NT) domain of RelA- and
SpoT-like ppGpp synthetases and hydrolases; Region:
NT_Rel-Spo_like; cd05399"
/db_xref="CDD:143389"
misc_feature order(363673..363675,363679..363681,363742..363747,
363757..363759,363841..363843,363847..363849,
363862..363864,363868..363870,363874..363876,
363886..363888,363922..363924,363928..363930,
363934..363936,363958..363963)
/locus_tag="A1E_01625"
/note="synthetase active site [active]"
/db_xref="CDD:143389"
misc_feature order(363673..363675,363841..363843,363847..363849,
363862..363864,363868..363870,363874..363876,
363886..363888,363922..363924,363928..363930,
363958..363960)
/locus_tag="A1E_01625"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143389"
misc_feature order(363742..363744,363922..363924)
/locus_tag="A1E_01625"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143389"
gene complement(364741..365274)
/gene="groEL"
/locus_tag="A1E_01630"
/db_xref="GeneID:5626861"
CDS complement(364741..365274)
/gene="groEL"
/locus_tag="A1E_01630"
/note="COG5342 Invasion protein B, involved in
pathogenesis"
/codon_start=1
/transl_table=11
/product="chaperonin GroEL"
/protein_id="YP_001492056.1"
/db_xref="GI:157803507"
/db_xref="GeneID:5626861"
/translation="MKDYVKKIAFVFSGLFIITGNFVLYSIQNVNASTTPKKYGAWTL
NCTLNEKKKLCFLSQQINNLEKDKEKEILAIYHIGYFNQEQEEQELKIIEIVPSNVQI
PAGTIINSGDKRIAAGKYVNCTVNGCQALATITQNDLDIILSNNNYVELITADGKQAK
ISFIKDGLKEGIKALSR"
misc_feature complement(364744..365271)
/gene="groEL"
/locus_tag="A1E_01630"
/note="Invasion associated locus B (IalB) protein; Region:
IalB; cl02207"
/db_xref="CDD:154799"
gene complement(365271..366662)
/gene="gltX"
/locus_tag="A1E_01635"
/db_xref="GeneID:5626862"
CDS complement(365271..366662)
/gene="gltX"
/locus_tag="A1E_01635"
/EC_number="6.1.1.17"
/note="Charges one glutamine molecule and pairs it to its
corresponding RNA trinucleotide during protein
translation"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_001492057.1"
/db_xref="GI:157803508"
/db_xref="GeneID:5626862"
/translation="MTNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIED
TDKERSTNEAVEAIFSGLKWLGLDWDGEVIFQSKRNDLYKETALKLLQAGKAYYCFTS
QEEIEKQRQKALENKQYFIFNSDWRDKDPAAYPTDIKPVIRLKTPREGSITIRDTLQG
DVVIENSHIDDMVLLRSDGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQIAIYQA
CGYAVPSMTHIPLIHGADGAKLSKRHGALGVAAYKDMGYLPESVCNYLLRLGWSHGDD
EIISMDQAIKWFNLDSLGKSPAKLDFANMNSLNAHYLRLLDNDSATSKTVERLRQNYN
VSKQEVIYINQAIRSLLVRSETLLDLVQLAQIYLVDSPIIYKQDAKEIIENCDKDLIK
QVIENLNKLKQFDKESVQNKFKEIATHNGLKLNELMKPVRALITGMTASPSVFEIAEI
LGKENILKRLKII"
misc_feature complement(365274..366656)
/gene="gltX"
/locus_tag="A1E_01635"
/note="glutamyl-tRNA synthetase; Provisional; Region:
gltX; PRK14895"
/db_xref="CDD:184889"
misc_feature complement(<366381..366656)
/gene="gltX"
/locus_tag="A1E_01635"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(366603..366614)
/gene="gltX"
/locus_tag="A1E_01635"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature complement(365721..>366143)
/gene="gltX"
/locus_tag="A1E_01635"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(order(365943..365948,365970..365975,
366048..366053,366057..366062,366102..366104,
366114..366116))
/gene="gltX"
/locus_tag="A1E_01635"
/note="active site"
/db_xref="CDD:173905"
misc_feature complement(365934..365948)
/gene="gltX"
/locus_tag="A1E_01635"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene complement(366755..367465)
/locus_tag="A1E_01640"
/db_xref="GeneID:5626863"
CDS complement(366755..367465)
/locus_tag="A1E_01640"
/note="Involved in ubiquinone biosynthesis"
/codon_start=1
/transl_table=11
/product="3-demethylubiquinone-9 3-methyltransferase"
/protein_id="YP_001492058.1"
/db_xref="GI:157803509"
/db_xref="GeneID:5626863"
/translation="MSSIDKKELEKFEKISHNWWNKDGDFGILHCINPIRLEYIIEKI
TSHYNDISKLEILDVGCGGGLIATPLAAQGFNVTAIDALQSNIETATAYAKENGVKIN
YLQSTIEELKSNKLYDVVICLEVIEHVENVQQFILNLVQHIKPNGIAIISTINRMKKA
YILGIIVAEYILGWVPKNTHNYSKFLKPSEIYEMLTDTGIEIKELKGLIYDMAKNEWK
LSDNIEVNYFMYLERNTH"
misc_feature complement(366761..367465)
/locus_tag="A1E_01640"
/note="bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional; Region: PRK05134"
/db_xref="CDD:179944"
misc_feature complement(367010..367300)
/locus_tag="A1E_01640"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(367097..367099,367142..367150,
367220..367225,367271..367291))
/locus_tag="A1E_01640"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 367641..368408
/locus_tag="A1E_01645"
/db_xref="GeneID:5626864"
CDS 367641..368408
/locus_tag="A1E_01645"
/EC_number="2.1.1.64"
/note="COG1108 ABC-type Mn2+/Zn2+ transport systems,
permease components"
/codon_start=1
/transl_table=11
/product="3-demethylubiquinone-9 3-methyltransferase"
/protein_id="YP_001492059.1"
/db_xref="GI:157803510"
/db_xref="GeneID:5626864"
/translation="MTLIILALILISCIFAPLGCIALWKRYIYFSDGLAHSSFLAASI
SIIAHFPLIYSGIIVAILFSFFVFIFKNNAEKNAVINLISSFMLAIALVINYFTSLQN
NIVNLLFGDILSVSFNDFIILAIVLITIIGFIIYFYNQILLIIINRDIAVIKGLKVNI
IELIFLLLLSLSVFSAIKIVGVLMVTAILLIPAMIARFMSYSPSQMIIISILISLFIN
FCAALSSFYFDLPLTPIFIIIGVLIYGLLYLKQLFVD"
misc_feature 367674..368342
/locus_tag="A1E_01645"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:31305"
misc_feature order(367866..367868,367872..367877,367884..367889,
367896..367901,367908..367910,367914..367916,
367920..367922,367953..367958,367965..367967,
368193..368195)
/locus_tag="A1E_01645"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(367920..367922,367995..367997,368169..368171,
368181..368183)
/locus_tag="A1E_01645"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature order(368043..368048,368052..368060,368064..368069,
368073..368090,368094..368102,368226..368228,
368247..368249)
/locus_tag="A1E_01645"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
gene complement(368952..372380)
/locus_tag="A1E_01650"
/db_xref="GeneID:5626865"
CDS complement(368952..372380)
/locus_tag="A1E_01650"
/note="Synthesizes thioester adducts of fatty acids
enzymatically to the phosphopantetheine group of acyl
carrier protein"
/codon_start=1
/transl_table=11
/product="acylglycerophosphoethanolamine acyltransferase"
/protein_id="YP_001492060.1"
/db_xref="GI:157803511"
/db_xref="GeneID:5626865"
/translation="MDTNKLYLFKDRRFLPNFIIQLCGCLNDNILKNAIVILITYSIS
GALSKYNNLLVLIANATFVLPFIICASIAGQIADKYERANLIKIIKICEIGIIAFTIY
GFHYNNLLILFCSICLMGIHSTFFGPIKYSVIPDHLNKYELLGANGFVEAGTFLSIFI
GTIIGSYYTISNNFIIYSLITIAFLGFITSLFVPKSGNANRDIKINLNIIDESINMIK
YAKAKKQIYLAILGISWFWFIGAAIISQIPLLAKITFKADENVANLFLAVFSLGVGVG
AFLCSKIFEDEITVKYLFISALGISIFGIDLFFASRISSVNYEPTQLKSILVFLSKRH
NWRIVIDLFFLAAIGGLYLVPLFAILQHYANPAHRSRIIAVNNLINSIFMMGSTIILS
LLFYLNFTIPWIILFISLANIIVTIHIYQLIPEVKIIPYTLLRRILQICFDLMYKVEV
KGFKNFQKAGKKVVVVANHISYLDPPLIATYLREEMTFAISPDIQKIWWIKPFLRMAK
TLPVDPSNPMAIKTLIKEVQKEQKVAIFPEGRISVTGSLMKIYEGPGMIADKAGATIL
PVRIDGTQFTHLSKLKHILKRKIFPKITITVLPPVKFANMNAVSNQERRSYIARTLYD
IMADMMFESSDYKNTLFSSLIEAAKIHGFKKKIVDDFENNVVTYRELILKSFILGNLI
KTNNIFGRNLGLMLPNTTNTLIAFYAMQSSDYVPAIINWSSSISTIIKSCKLAQIKVV
YTSKQFIEKANLHELITNLLDFGIKIIYLEDFTNQISIALKLKAKIGSYFAHTYYNYL
CRNRDDEKPSVIIFTSGTEGEPKAVLLSHRNLQTNRYQITAKVPFSPEDIVFNSLPLF
HCFGLGGAIITTLNGIKLFLYPSPLNYSTIPEVIYDVGATILISTDTFLNGYANYAHP
YDFYSLRYIFAGSEKLKESTRKFWLNKYGIRIFEGYGITEASPIIACNTPMHNKAGTV
GRLLPKIDYKLEKVEGINEGERLFIRGPNIMLGYLESENNHTYREWYDTNDIVKIDSE
GYITILGRVKHFAKIAGYMISLTKIEELASEIDPDSLHAAISVPDKTHGEKIILFTTG
SIINSKNFTDVVSKAQISLLHLPKVIITDSEIPLLANGKIDYLEIMKNVDRYIQ"
misc_feature complement(368955..372377)
/locus_tag="A1E_01650"
/note="acylglycerophosphoethanolamine acyltransferase;
Provisional; Region: PRK06814"
/db_xref="CDD:180708"
misc_feature complement(371130..372284)
/locus_tag="A1E_01650"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(371229..371231,371238..371243,
371250..371255,371262..371267,371298..371300,
371307..371312,371322..371324,371331..371336,
371343..371345,371550..371552,371562..371564,
371571..371573,371583..371585,371595..371597,
371637..371639,371646..371651,371658..371663,
371670..371672,371907..371909,371925..371930,
371937..371942,371976..371978,371985..371990,
371997..372002,372009..372014,372159..372164,
372168..372173,372183..372185,372192..372197,
372204..372206,372237..372242,372246..372254,
372261..372263))
/locus_tag="A1E_01650"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(370569..371063)
/locus_tag="A1E_01650"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature complement(order(370758..370766,370902..370913,
370959..370961,370965..370967,370974..370976))
/locus_tag="A1E_01650"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
misc_feature complement(369168..370382)
/locus_tag="A1E_01650"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
gene complement(372407..372565)
/locus_tag="A1E_01655"
/db_xref="GeneID:5626840"
CDS complement(372407..372565)
/locus_tag="A1E_01655"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492061.1"
/db_xref="GI:157803512"
/db_xref="GeneID:5626840"
/translation="MSSIEDTKEKPKSVKSTAKFNDLSIALKKNLQRRKKVQKEKNNI
GNKPDLTY"
gene 372645..374189
/locus_tag="A1E_01660"
/db_xref="GeneID:5626841"
CDS 372645..374189
/locus_tag="A1E_01660"
/EC_number="6.4.1.3"
/codon_start=1
/transl_table=11
/product="propionyl-CoA carboxylase beta chain precursor"
/protein_id="YP_001492062.1"
/db_xref="GI:157803513"
/db_xref="GeneID:5626841"
/translation="MNQSNIISPELLDERKNIARQGGGEARINAQHHKGKLTARERIE
VLLDPNSFTETGMFVAHRCANFGMQDKKFLGDGVVTGHGTINGRLVFIYSQDFTVLGG
SLGEYHAKKICDIIDQAIATAAPVIGINDSGGARIQEGVDALAGYGELFQRNVLASGV
IPQITLIMGPCAGGAVYSPALTDFIFMVKNSSYMFVTGPDVVKTVTGEEVSQEKLGGA
RMHTTKSGVADLAFNNDIEALLEIRKFFNFLPSSNRSPLPVRSTVDPADRVDMSLSTL
IPNTPNKPYDMKELVERIVDEGEFFELQPDFAKNIIIGFGYMEGYPVGFVANQPLHLA
GCLDINASRKAARFIRFCDAFNIPIVSLVDVPGFLPGTSQEHDGIIKHGAKLLYAYAE
ATVPKITVITRKAYGGAYIVMNSKHLRGDINYAWFNSEIAVMGAEGAAEIIFKEECKA
PEAKKQKIDEYRKVVTSPFVAASRGYLDDIIRPQNTRWRICKALNFLRTKKVELPWKK
HDNLPL"
misc_feature 372672..374186
/locus_tag="A1E_01660"
/note="methylmalonyl-CoA decarboxylase alpha subunit;
Region: mmdA; TIGR01117"
/db_xref="CDD:130187"
misc_feature 372753..373361
/locus_tag="A1E_01660"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
misc_feature 373425..>374018
/locus_tag="A1E_01660"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
gene 374232..374357
/locus_tag="A1E_01665"
/db_xref="GeneID:5626842"
CDS 374232..374357
/locus_tag="A1E_01665"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492063.1"
/db_xref="GI:157803514"
/db_xref="GeneID:5626842"
/translation="MLKISILNWIVSILCSVIAMTKKVDLCGNDIENQAIKTAAV"
gene 374354..374755
/locus_tag="A1E_01670"
/db_xref="GeneID:5626843"
CDS 374354..374755
/locus_tag="A1E_01670"
/note="COG4799 Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492064.1"
/db_xref="GI:157803515"
/db_xref="GeneID:5626843"
/translation="MTVMKKFEYKYWIVNMKTTIPPPLELTKILEIIYMKHPIPKDQN
SNKLVNAYTVTRIIRDIKEIKDTSTVSMTLVTPITPHAPTLDNKFYHLESQNYYLCYI
KHTLISPIKHLAEEALTLVPVQVQDIYAQCR"
gene 374891..376888
/locus_tag="A1E_01675"
/db_xref="GeneID:5626844"
CDS 374891..376888
/locus_tag="A1E_01675"
/EC_number="6.2.1.20"
/codon_start=1
/transl_table=11
/product="acylglycerophosphoethanolamine acyltransferase"
/protein_id="YP_001492065.1"
/db_xref="GI:157803516"
/db_xref="GeneID:5626844"
/translation="MNKPLFDKILIANRSEIAVRIIRTLKKMGIKSVAVYSEADTNSI
YVQHADEAYYIGDSPATESYLSIKNIISAIRESGASAVHPGYGFLSENPNFANILKRE
GVVLIGPSATTIKKMGDKIEAKKIAIEAGVSTVPGYMGTIKDVKQAVDIAKEIGFPII
VKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLL
ADQYGNSVCLGERECSIQRHHQKVIEEAPSSFITEDVRQEMYKQVISLSQKVGYYSAG
TVEFIVDSNKNFYFLEMNTRLQVEHPVTELITGIDIVEEMIKIAAGAKLSFTQDDVKL
KGWAFESRICAENPSRGFLPSSGRIIAYSEPAKSPNIRIDTGIGLGGEVSMFYDSMIA
KLCTYGETREQAIEVMRSALSSYIINGIAHNISFLEAVMLHPRFVSGDISTAFIQEEY
PDGFSGASLTSEVTTVFLATAIFIYISEQRRASLISGNINNQANKIGTRWVVTIDDKL
FPVLITPVENGYNIRHESDRIYIRSNWNLGNELFTAIINGKKTNVKIENIRTGYLLSH
AGISVKAFVRSPRISELEALMVSKVVVEENTELQAPLSGQIVSIKVMEGQQVIAGQEI
MVLTAMKMENLILAERDGKIAKIYVNEKDNVVRGQILLEFA"
misc_feature 374903..376885
/locus_tag="A1E_01675"
/note="Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism]; Region: COG4770"
/db_xref="CDD:34383"
misc_feature 374906..375229
/locus_tag="A1E_01675"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 375245..375781
/locus_tag="A1E_01675"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
misc_feature 375908..376228
/locus_tag="A1E_01675"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:197946"
misc_feature 376682..376882
/locus_tag="A1E_01675"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature order(376751..376753,376778..376786,376805..376807)
/locus_tag="A1E_01675"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature 376781..376783
/locus_tag="A1E_01675"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(378084..378203)
/locus_tag="A1E_01680"
/db_xref="GeneID:5626460"
CDS complement(378084..378203)
/locus_tag="A1E_01680"
/note="COG4770 Acetyl/propionyl-CoA carboxylase, alpha
subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492066.1"
/db_xref="GI:157803517"
/db_xref="GeneID:5626460"
/translation="MNLINIILHRKVDKYKALEFAIQKKNYQQTDDLIALTLM"
gene complement(378459..381698)
/gene="ileS"
/locus_tag="A1E_01685"
/db_xref="GeneID:5626461"
CDS complement(378459..381698)
/gene="ileS"
/locus_tag="A1E_01685"
/note="IleRS; catalyzes the formation of
isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since
isoleucine and other amino acids such as valine are
similar, there are additional editing function in this
enzyme; one is involved in hydrolysis of activated
valine-AMP and the other is involved in deacylation of
mischarged Val-tRNA(Ile); there are two active sites, one
for aminoacylation and one for editing; class-I
aminoacyl-tRNA synthetase family type 2 subfamily; some
organisms carry two different copies of this enzyme; in
some organisms, the type 2 subfamily is associated with
resistance to the antibiotic pseudomonic acid (mupirocin)"
/codon_start=1
/transl_table=11
/product="isoleucyl-tRNA synthetase"
/protein_id="YP_001492067.1"
/db_xref="GI:157803518"
/db_xref="GeneID:5626461"
/translation="MTNTKYYPEVSSNADFAAIEREILKLWQDNNIFQKSIDNRIKDA
EFIFYDGPPFANGLPHYGHLLTGFIKDVYARYQTIKGKKVERRFGWDCHGLPAEMQSE
QELGISGRLAITNFSIEKFNSHCRASVMKYTGEWEQYVTRQARWVDFKNSYKTMDTHF
MESVLWAFKELYNKGLLYESMRVMPYSWACETPLSHFETRLDNSYRERADKAVTVSFM
LRDKLPHSEYKEYRIFAWTTTPWTLPANLALAVGSDIDYALVPKNDICYIIAAASVSK
YAKELELKGDEQFTIIKGSELEGLRYKPLFNYFENHPNSFKIFACDFVVEGDGTGVVH
MAPGFGEDDQILCESKGIELVCPVDNSGKFTKEIPDLEGLQVFDANDKIIIKLKEQGN
WLKTEQYIHNYPHCWRTDTPLIYKAVPSWYVKVTNFKDRIVELNQQINWIPSHVKDNV
FGKWLENARDWSISRNRFWGTPLPVWKSDDPKYPRIDVYGSIEELEKDFGVKVTDLHR
PFIDELTRANPDDPTGKSTMRRIEDVFDCWFESGSMPYSQAHYPFENKKWFEDHFPAD
FIVEYVAQTRGWFYTLMVLSTALFDRPPFLNCICHGVILDTTGQKLSKRLNNYADPLE
LFDKYGSDALRITMLSSNVVKGQELLIDKDGKMVFDTLRLFIKPIWNAYHFFTMYANA
DSLKGKSDFASENVLDIYILSKLKIAVQKIEKSLDNFDTQAAYHQVSEFFEVLNNWYI
RRSRARFWKSEKDADKQNAYNTLYSCLETMAIAMSALVPMISEAIYLGLHNTVIPQLD
YGISGDKPGAQDPIIKSQDGIRGCRNDNLSVHLCNYPKLSNFEVNHELVATMDTVLDI
CSNSLFIRSNENVRVRQPLASITIISKHNDKLKDFEDLIKDEINVKAIIYRDDLENYA
TTKLSLNFPMLGKRLPYKMKEIIAASKKGEWEATASALAICGETLKSEEYKLVLEPYS
HIKGAASFADNSSLLILDLELTPELIKEGIARDIVRFIQQARKDADCSITDRILIEII
SESDLSKIINIYGDYIKEQTLSEFAKDFTPDYVNEIELENHKIQLKIKR"
misc_feature complement(378462..381689)
/gene="ileS"
/locus_tag="A1E_01685"
/note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS;
PRK06039"
/db_xref="CDD:180364"
misc_feature complement(<381141..381566)
/gene="ileS"
/locus_tag="A1E_01685"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature complement(381510..381521)
/gene="ileS"
/locus_tag="A1E_01685"
/note="HIGH motif; other site"
/db_xref="CDD:173909"
misc_feature complement(379767..>380465)
/gene="ileS"
/locus_tag="A1E_01685"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature complement(order(379857..379874,379884..379898,
379965..379967,379971..379973,379977..379991,
380076..380078,380085..380087,380352..380354))
/gene="ileS"
/locus_tag="A1E_01685"
/note="active site"
/db_xref="CDD:173909"
misc_feature complement(379854..379868)
/gene="ileS"
/locus_tag="A1E_01685"
/note="KMSKS motif; other site"
/db_xref="CDD:173909"
misc_feature complement(379116..379739)
/gene="ileS"
/locus_tag="A1E_01685"
/note="Anticodon-binding domain of archaeal, bacterial,
and eukaryotic cytoplasmic isoleucyl tRNA synthetases;
Region: Anticodon_Ia_Ile_ABEc; cd07961"
/db_xref="CDD:153415"
misc_feature complement(order(379116..379118,379125..379127,
379467..379469,379476..379478,379488..379490,
379500..379502,379509..379514,379521..379526,
379533..379535,379674..379679,379686..379688,
379695..379697,379710..379712,379719..379721,
379731..379733))
/gene="ileS"
/locus_tag="A1E_01685"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153415"
misc_feature complement(order(379677..379679,379686..379688))
/gene="ileS"
/locus_tag="A1E_01685"
/note="anticodon binding site; other site"
/db_xref="CDD:153415"
gene complement(382168..382779)
/gene="ileS"
/locus_tag="A1E_01690"
/db_xref="GeneID:5626462"
CDS complement(382168..382779)
/gene="ileS"
/locus_tag="A1E_01690"
/EC_number="6.1.1.5"
/note="COG5590 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="isoleucyl-tRNA synthetase"
/protein_id="YP_001492068.1"
/db_xref="GI:157803519"
/db_xref="GeneID:5626462"
/translation="MSIQEEYYIKKLSFVQSSLELLPFNEWNNKLLKEAEEKCGFDKG
YSLILFPEGLSEIVEFCESYLDKILLESLSIIEEPAKIREKISLAIKIRIKSTLPIIH
SKNAAYFALNPIQGAKVAFRSCDTIWRYAGDKSLDFNYYTKRSVLLSVYVSSILVYIQ
DESEHYIDTDKFIENSVENIVKTFSQMRKLLDPSNIPIVRMFT"
misc_feature complement(382171..382779)
/gene="ileS"
/locus_tag="A1E_01690"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5590"
/db_xref="CDD:35149"
misc_feature complement(382210..382749)
/gene="ileS"
/locus_tag="A1E_01690"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 382865..383065
/gene="rpsU"
/locus_tag="A1E_01695"
/db_xref="GeneID:5626463"
CDS 382865..383065
/gene="rpsU"
/locus_tag="A1E_01695"
/note="a small basic protein that is one of the last in
the subunit assembly; omission does not prevent assembly
but the subunit is inactive; binds central domain of 16S
rRNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S21"
/protein_id="YP_001492069.1"
/db_xref="GI:157803520"
/db_xref="GeneID:5626463"
/translation="MILVNVHAGNCDNTLKNFKKKLQRELYFRKMKEQRYYETPSAKR
VRKAQEAARRQRKFARKKMFDE"
misc_feature 382865..>382987
/gene="rpsU"
/locus_tag="A1E_01695"
/note="30S ribosomal protein S21; Reviewed; Region: rpsU;
PRK00270"
/db_xref="CDD:178952"
gene complement(383216..383350)
/locus_tag="A1E_01700"
/db_xref="GeneID:5626464"
CDS complement(383216..383350)
/locus_tag="A1E_01700"
/note="COG0828 Ribosomal protein S21"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492070.1"
/db_xref="GI:157803521"
/db_xref="GeneID:5626464"
/translation="MCTLRFDYINKQMRDFLEKNSAKYNTQVMDIEQNIFLLQLKKKI
"
gene 383944..385746
/locus_tag="A1E_01705"
/db_xref="GeneID:5626817"
CDS 383944..385746
/locus_tag="A1E_01705"
/note="COG5000 Signal transduction histidine kinase
involved in nitrogen fixation and metabolism regulation"
/codon_start=1
/transl_table=11
/product="nitrogen regulation protein ntrY"
/protein_id="YP_001492071.1"
/db_xref="GI:157803522"
/db_xref="GeneID:5626817"
/translation="MLSYFKQNLRSYFSSRMLIFILMASSVIVACATFYVISLESKSF
STIIGFLLVDLAVFLILGILLTQKFFAKNNNNDTSKLQNRIVIAFSLVAAIPTIIVSV
FSVYFFNLSVQAWFDKKISTVLDQSVIVAESYIAEHKLQLKETALAVAEDLGDMYYDL
IHNPALFTKTLNTEAEMRSLDEAIVLNKSTNTIVANSYLSFSLSFATIPAHLIKKADL
GEPVEVKSDPTKIRMLIKLKEYNDVYLLVGRLVDNKIIDHIDATNGAAAEYNSLKNEI
DNIQIKFSIMFIFIALLLLFVAISFGVIFTAKIVNPIKKLVTATDKVKDGDLTVQVPE
NEVDKDEIGTLYAAFNRMIKQISRQQRDLVIAQRAMVWSDVAKKVAHEIKNPLTPILL
ASERLFKKFSPEIKERTEFENYLKMIIRHTNDIKSIVSEFVLFARLPAPKFTKSEIVY
LVKHIVEARKLLNDHILYKFESNVDQFDFMCDATQINQVMINLLKNAEESIEGREDGK
IEVTIDAKDDFISVIVIDNGKGFPPELIGKATESYVTTSSKGMGVGLAIVKRIVEEHC
GVLDIANREEKGAIIDIKFDLKELDLKILKIGLK"
misc_feature 383968..>385053
/locus_tag="A1E_01705"
/note="Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms]; Region: NtrY; COG5000"
/db_xref="CDD:34605"
misc_feature <384043..384267
/locus_tag="A1E_01705"
/note="Serpentine type 7TM GPCR chemoreceptor Srh; Region:
7TM_GPCR_Srh; cl11665"
/db_xref="CDD:209378"
misc_feature 384868..385017
/locus_tag="A1E_01705"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(384868..384873,384880..384885,384889..384894,
384901..384906,384910..384912,384964..384969,
384973..384978,384985..384990,384994..384999,
385006..385011)
/locus_tag="A1E_01705"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 385078..385254
/locus_tag="A1E_01705"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(385078..385080,385090..385092,385099..385101,
385111..385113,385120..385122,385183..385185,
385195..385197,385204..385206,385216..385218,
385225..385227,385237..385239)
/locus_tag="A1E_01705"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 385084..385086
/locus_tag="A1E_01705"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 385399..385680
/locus_tag="A1E_01705"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(385417..385419,385429..385431,385438..385440,
385513..385515,385519..385521,385525..385527,
385531..385536,385597..385608,385654..385656,
385660..385662,385675..385680)
/locus_tag="A1E_01705"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 385429..385431
/locus_tag="A1E_01705"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(385525..385527,385531..385533,385597..385599,
385603..385605)
/locus_tag="A1E_01705"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 385940..387447
/locus_tag="A1E_r05750"
/db_xref="GeneID:5626818"
rRNA 385940..387447
/locus_tag="A1E_r05750"
/product="16S ribosomal RNA"
/db_xref="GeneID:5626818"
gene 388111..388425
/locus_tag="A1E_01710"
/db_xref="GeneID:5626819"
CDS 388111..388425
/locus_tag="A1E_01710"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492072.1"
/db_xref="GI:157803523"
/db_xref="GeneID:5626819"
/translation="MGVKTLNVVDKKRGNDALYLVILDSSENDTELITCLIKNGININ
HHNSLGNTALLTSGYLSVVRILLENGADINIKNNENITSAILLQNEMFRYTIFLLIDL
LL"
misc_feature 388144..>388356
/locus_tag="A1E_01710"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cd00204"
/db_xref="CDD:29261"
misc_feature <388183..388341
/locus_tag="A1E_01710"
/note="Ankyrin repeats (3 copies); Region: Ank_2;
pfam12796"
/db_xref="CDD:205076"
gene 388422..388532
/locus_tag="A1E_01715"
/db_xref="GeneID:5626820"
CDS 388422..388532
/locus_tag="A1E_01715"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492073.1"
/db_xref="GI:157803524"
/db_xref="GeneID:5626820"
/translation="MINKNSLAVKKIYEKINNKITKELAEALIKKYEVFK"
gene 388589..388687
/locus_tag="A1E_01720"
/db_xref="GeneID:5626821"
CDS 388589..388687
/locus_tag="A1E_01720"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492074.1"
/db_xref="GI:157803525"
/db_xref="GeneID:5626821"
/translation="MNKGNTSIVKSADISKKDYYISSTDFKGHIAN"
gene 389243..389380
/locus_tag="A1E_01725"
/db_xref="GeneID:5626249"
CDS 389243..389380
/locus_tag="A1E_01725"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492075.1"
/db_xref="GI:157803526"
/db_xref="GeneID:5626249"
/translation="MNLAAMLEFKSPYGFFYSLVLMLLSINFLRKRTNYKFLLIIYSF
I"
misc_feature <389243..389320
/locus_tag="A1E_01725"
/note="metal ion transporter CorA-like divalent cation
transporter superfamily; Region: MIT_CorA-like; cl00459"
/db_xref="CDD:213419"
gene 389492..391237
/gene="rpsU"
/locus_tag="A1E_01730"
/db_xref="GeneID:5626250"
CDS 389492..391237
/gene="rpsU"
/locus_tag="A1E_01730"
/note="COG0666 FOG: Ankyrin repeat"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S21"
/protein_id="YP_001492076.1"
/db_xref="GI:157803527"
/db_xref="GeneID:5626250"
/translation="MQKILLKGRNVNIKNPNPNIKEIKTLAELPSGTGHEYFINSHGL
EIKSFLKKDYSFLYITGLSAEDGTKISILDITLLNNIQNGIHADQCNIVHIYSCYSGA
AQHHLNCIHGNIVLCTYNKASDVNVILLAQSNYDARIKNDSSLIEYIRDNFHLLAASD
FSISYKLDDQIYNFSLSADEIKKMKSIEELPAFLHKKYDAFVKFYTKIYAEYHESYPE
IFNLKIEPEPKALTQADLIRVFNRVVVLEVYNFNKSSLSNIKTMLNQEGLNINICIDR
AIRQGNCELLICLLNYYNTKEVEPYILDKAIERGDINILKAILEHSTTKIGSYTLNQV
IERGDVNILKAILEHSTTKIESYTLNQVIERGDVNILKAILEHSTTQMDFYTLAQVIK
KGDVNILKVVLEHNTKEVEFCSLFLIYQAIERGDVNILKAILEHSTTKIGSYTLNQVI
ERGDVNILKAILEHSTTQIESYNLAKVVEKGDVNILKAVLEHNTKEVEFCTLFLIYKA
IERGDVNILKAILEHNTKEVDSYNFNLEILFNDPTVNSYNNTAEETNDVENTSTINTM
LNVVEEVTILGESSE"
gene complement(391306..391662)
/gene="rnpA"
/locus_tag="A1E_01735"
/db_xref="GeneID:5626251"
CDS complement(391306..391662)
/gene="rnpA"
/locus_tag="A1E_01735"
/EC_number="3.1.26.5"
/note="protein component of RNaseP which catalyzes the
removal of the 5'-leader sequence from pre-tRNA to produce
the mature 5'terminus; this enzyme also cleaves other RNA
substrates"
/codon_start=1
/transl_table=11
/product="ribonuclease P"
/protein_id="YP_001492077.1"
/db_xref="GI:157803528"
/db_xref="GeneID:5626251"
/translation="MSITSLKNQKEFELINKLGKKFHERYFILVIAKNLPKIFLETKY
NIFLGIKVSKKLNKKAVVRNKIKRRIRHLIRMNVSDSKLKAIKLAMIIIPRKGFEEIN
FSHLNDELSNIILKNI"
misc_feature complement(391309..391662)
/gene="rnpA"
/locus_tag="A1E_01735"
/note="ribonuclease P; Reviewed; Region: rnpA; PRK01492"
/db_xref="CDD:100883"
gene complement(391682..391816)
/gene="rpmH"
/locus_tag="A1E_01740"
/db_xref="GeneID:5626252"
CDS complement(391682..391816)
/gene="rpmH"
/locus_tag="A1E_01740"
/note="in Escherichia coli transcription of this gene is
enhanced by polyamines"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L34"
/protein_id="YP_001492078.1"
/db_xref="GI:157803529"
/db_xref="GeneID:5626252"
/translation="MKRTFQPSNLVRKRRHGFRARMATPSGRAILRRRRAKGRHKLSA
"
misc_feature complement(<391742..391816)
/gene="rpmH"
/locus_tag="A1E_01740"
/note="50S ribosomal protein L34; Reviewed; Region: rpmH;
PRK00399"
/db_xref="CDD:179004"
gene complement(391948..392301)
/gene="rplT"
/locus_tag="A1E_01745"
/db_xref="GeneID:5626253"
CDS complement(391948..392301)
/gene="rplT"
/locus_tag="A1E_01745"
/note="binds directly to 23S ribosomal RNA prior to in
vitro assembly of the 50S ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_001492079.1"
/db_xref="GI:157803530"
/db_xref="GeneID:5626253"
/translation="MTRAKSGKISKNRHKKILKLAKGYRGRANSCFRVAIAKVEKALQ
YAYRDRRNRKRNFRGLWIQRINAAVRTHGLIYSQFMGTLKKAGIDIDRKVLAELAVNN
SDGFASIVEKAKAHI"
misc_feature complement(391960..392301)
/gene="rplT"
/locus_tag="A1E_01745"
/note="ribosomal protein L20; Region: rpl20; CHL00068"
/db_xref="CDD:177008"
misc_feature complement(391969..392286)
/gene="rplT"
/locus_tag="A1E_01745"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature complement(order(392020..392028,392050..392052,
392059..392064,392071..392076,392092..392094,
392104..392106,392113..392121,392125..392169,
392176..392181,392191..392196,392203..392214,
392218..392241,392254..392265,392269..392286))
/gene="rplT"
/locus_tag="A1E_01745"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature complement(order(391975..391980,391996..392001,
392017..392019,392026..392037,392152..392154,
392161..392166,392170..392175,392182..392184,
392194..392196))
/gene="rplT"
/locus_tag="A1E_01745"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature complement(order(392002..392004,392011..392013,
392020..392022,392092..392094,392098..392103,
392110..392112,392119..392124,392131..392133))
/gene="rplT"
/locus_tag="A1E_01745"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene complement(392317..392523)
/gene="rpmI"
/locus_tag="A1E_01750"
/db_xref="GeneID:5626653"
CDS complement(392317..392523)
/gene="rpmI"
/locus_tag="A1E_01750"
/note="COG0291 Ribosomal protein L35"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_001492080.1"
/db_xref="GI:157803531"
/db_xref="GeneID:5626653"
/translation="MPKLKTKSAAKKRFKLTASGNVIASQAGKKHFMRRRTKAQIRNL
RGTTILCNQEGYNIKKYFLPYGTN"
misc_feature complement(392326..392523)
/gene="rpmI"
/locus_tag="A1E_01750"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:178913"
gene 392810..393487
/gene="rpmI"
/locus_tag="A1E_01755"
/db_xref="GeneID:5626654"
CDS 392810..393487
/gene="rpmI"
/locus_tag="A1E_01755"
/note="COG0602 Organic radical activating enzymes"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_001492081.1"
/db_xref="GI:157803532"
/db_xref="GeneID:5626654"
/translation="MFGQNPKRSILNGDGTKLEVKSIFKTIQGEGIFVGSPAIFVRLG
GCNLACHFCDTEFEDFDLVDITEILNKVESLALNSKNEKSVNLVVITGGEPMRQPIAL
LCQKLLDRDFKVQIETNGTLYRSLPNEVSIICSPKAGQTGYSKIREDLLSQISAVKFI
VAKNILEYSFIPEVGQTAYNIPVFVQPMDQNNPKLNDENNALAVKLALESGSKLSLQT
HKFLGID"
misc_feature 392852..393484
/gene="rpmI"
/locus_tag="A1E_01755"
/note="Organic radical activating enzymes
[Posttranslational modification, protein turnover,
chaperones]; Region: NrdG; COG0602"
/db_xref="CDD:30947"
misc_feature 392939..>393181
/gene="rpmI"
/locus_tag="A1E_01755"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(392945..392947,392951..392953,392957..392959,
392963..392971,393080..393082,393086..393091,
393158..393166)
/gene="rpmI"
/locus_tag="A1E_01755"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 393570..394184
/locus_tag="A1E_01760"
/db_xref="GeneID:5626655"
CDS 393570..394184
/locus_tag="A1E_01760"
/note="the Ctc family of proteins consists of two types,
one that contains the N-terminal ribosomal protein L25
domain only which in Escherichia coli binds the 5S rRNA
while a subset of proteins contain a C-terminal extension
that is involved in the stress response"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L25/general stress protein
Ctc"
/protein_id="YP_001492082.1"
/db_xref="GI:157803533"
/db_xref="GeneID:5626655"
/translation="MSKILELEAQSRTEFGTGAARALRREGRVPAIIYGAGKTPVSIS
LEEKEITKYYRKPAFISQLINLTIDKKQYKVLPKAVELHPVTDIVRHVDFVFLEEKKQ
KMEVPVVYEGKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPIATSLNS
SKIVLPKGCSFASKKEFVLATIIGRRGVKTEAEGEQQAAAEAGK"
misc_feature 393573..394139
/locus_tag="A1E_01760"
/note="50S ribosomal protein L25/general stress protein
Ctc; Reviewed; Region: PRK05618"
/db_xref="CDD:180166"
misc_feature 393585..393851
/locus_tag="A1E_01760"
/note="Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding
domain; Region: Ribosomal_L25_TL5_CTC; cd00495"
/db_xref="CDD:198379"
misc_feature order(393603..393605,393627..393635,393639..393641,
393669..393677,393687..393689,393801..393806,
393810..393812,393840..393842,393846..393848)
/locus_tag="A1E_01760"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:198379"
misc_feature order(393675..393677,393753..393755,393789..393791,
393801..393803)
/locus_tag="A1E_01760"
/note="CTC domain interface [polypeptide binding]; other
site"
/db_xref="CDD:198379"
misc_feature order(393795..393800,393807..393809,393828..393830)
/locus_tag="A1E_01760"
/note="L16 interface [polypeptide binding]; other site"
/db_xref="CDD:198379"
gene 394400..394957
/locus_tag="A1E_01765"
/db_xref="GeneID:5626656"
CDS 394400..394957
/locus_tag="A1E_01765"
/note="Enables the recycling of peptidyl-tRNAs produced at
termination of translation"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase"
/protein_id="YP_001492083.1"
/db_xref="GI:157803534"
/db_xref="GeneID:5626656"
/translation="MIFVIGLGNPGKEYQYTRHNIGFIVIEKIANQYNLSFSTKKKFN
CEIVESSVEKQKLIFIKPTTYMNLSGKSVISVKTYYNICSEKIFVIHDDIDLETGRIK
FKTGGGNGGHNGLKSIDRVIGNNYNRIRIGVGRPQNNQDVADYVLNNFPRSEYEIVIQ
SIDKITNNFDLILENKLEEFKNKIG"
misc_feature 394409..394918
/locus_tag="A1E_01765"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:73208"
misc_feature order(394424..394426,394454..394456,394592..394597,
394673..394675,394733..394735)
/locus_tag="A1E_01765"
/note="putative active site [active]"
/db_xref="CDD:73208"
misc_feature 394454..394456
/locus_tag="A1E_01765"
/note="catalytic residue [active]"
/db_xref="CDD:73208"
gene 395240..395416
/locus_tag="A1E_01770"
/db_xref="GeneID:5626657"
CDS 395240..395416
/locus_tag="A1E_01770"
/EC_number="3.1.1.29"
/note="COG0193 Peptidyl-tRNA hydrolase"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase"
/protein_id="YP_001492084.1"
/db_xref="GI:157803535"
/db_xref="GeneID:5626657"
/translation="MLEQKNGVVGDVDFFSFSCFDQNKNFVAGIRGMNSWGGFDSLFV
NQNIRNQNYGTLLI"
gene 395577..396674
/locus_tag="A1E_01775"
/db_xref="GeneID:5626476"
CDS 395577..396674
/locus_tag="A1E_01775"
/note="translation-associated GTPase; the crystal
structure of the Haemophilus influenzae YchF protein
showed similarity to the yeast structure (PDB: 1NI3);
fluorescence spectroscopy revealed nucleic acid binding;
the yeast protein YBR025c interacts with the translation
elongation factor eEF1"
/codon_start=1
/transl_table=11
/product="GTP-dependent nucleic acid-binding protein EngD"
/protein_id="YP_001492085.1"
/db_xref="GI:157803536"
/db_xref="GeneID:5626476"
/translation="MTLKLGIVGLPNVGKSTLFNALTASQAADAANYPFCTIEPNSSK
VSVPDKRLHKLASLTGSRKIISSYIDFVDIAGLVKGASKGEGLGNKFLSHIREVDAIL
HVLRCFEDEDIMHVHNKVDPLHDLEIIETELILADIELVEKRLATSEKRLKSGDKTMA
AQIELLKEVYKWLADGKPARVLNEILGLDKLKQLQLITFKPVLYVCNVLEQDAVDGNE
LTKLVVERAKKENAKSVVVSSKIEADIALLESIEEKEEFLKDIGLDETGLSKVIKEGY
NLLNLKSFFTIGPKEVHSWTFKDGTLASAAAGIIHTDFEKGFIRAEVIGYEDYISLGS
EAKAKAVGKMRLEGKEYKMQDGDIVHFRFNV"
misc_feature 395577..396671
/locus_tag="A1E_01775"
/note="GTP-binding protein YchF; Reviewed; Region:
PRK09601"
/db_xref="CDD:181981"
misc_feature 395592..396413
/locus_tag="A1E_01775"
/note="YchF GTPase; Region: YchF; cd01900"
/db_xref="CDD:206687"
misc_feature 395601..395624
/locus_tag="A1E_01775"
/note="G1 box; other site"
/db_xref="CDD:206687"
misc_feature order(395610..395612,395616..395627,396195..396200,
396204..396206,396288..396296)
/locus_tag="A1E_01775"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206687"
misc_feature 395673..395696
/locus_tag="A1E_01775"
/note="Switch I region; other site"
/db_xref="CDD:206687"
misc_feature 395685..395687
/locus_tag="A1E_01775"
/note="G2 box; other site"
/db_xref="CDD:206687"
misc_feature order(395790..395819,395838..395867)
/locus_tag="A1E_01775"
/note="Switch II region; other site"
/db_xref="CDD:206687"
misc_feature 395793..395804
/locus_tag="A1E_01775"
/note="G3 box; other site"
/db_xref="CDD:206687"
misc_feature 396195..396206
/locus_tag="A1E_01775"
/note="G4 box; other site"
/db_xref="CDD:206687"
misc_feature 396288..396296
/locus_tag="A1E_01775"
/note="G5 box; other site"
/db_xref="CDD:206687"
misc_feature 396417..396665
/locus_tag="A1E_01775"
/note="TGS_YchF_C: This subfamily represents TGS
domain-containing YchF GTP-binding protein, a universally
conserved GTPase whose function is unknown. The N-terminal
domain of the YchF protein belongs to the Obg-like family
of GTPases, and some members of the...; Region:
TGS_YchF_C; cd04867"
/db_xref="CDD:133440"
gene 396688..396903
/locus_tag="A1E_01780"
/db_xref="GeneID:5626477"
CDS 396688..396903
/locus_tag="A1E_01780"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492086.1"
/db_xref="GI:157803537"
/db_xref="GeneID:5626477"
/translation="MKTILPKWSLEVQDRLDYIVQQILTGAKDKIAMIILYGSYARGD
WVKDMYKEGSYYLCYISAFDCLIVLKK"
misc_feature 396745..>396831
/locus_tag="A1E_01780"
/note="RelA- and SpoT-like ppGpp Synthetases and
Hydrolases, catalytic domain; Region: Rel-Spo_like;
cl11966"
/db_xref="CDD:209402"
gene 397585..398814
/locus_tag="A1E_01785"
/db_xref="GeneID:5626478"
CDS 397585..398814
/locus_tag="A1E_01785"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492087.1"
/db_xref="GI:157803538"
/db_xref="GeneID:5626478"
/translation="MKIIKQIPAWILLCLFILSPTTETIYTSGLPSVTKYFGIDGGIT
QITSTLYFLGFAFGILSLGRLSDIYGRRPIVLLGLVIYVISSIISIFAVNIEMLMIAR
FTQAFGVSVGSVIGQAMARDSYQGSELSYVYASLSPWLLFIPAVGSSIGGYIIEYLNW
HYVFVFFSLTGTILLALYYKVLPETNSYINFSQSSKYCEVLQVIIKDKILWLYAFIIG
AFNGIYYGFYIEAPFIFIDKMKVAPSFYGKLAFLLSFAGIVGGFLGGYLIKKCHIHDK
KVMGLGCIFSLCGCILFAINAFMLEAVQTSKNLTIIIIFVPMMTHMLGHNLLIPMTLR
YALEDYAKVTGTAGSIFGAIYYVLIAVITYIVAQIHAETISNFALLCVALSISSAAAF
YYIWRLYKKKQYRKVIY"
misc_feature 397591..398769
/locus_tag="A1E_01785"
/note="drug resistance transporter, Bcr/CflA subfamily;
Region: efflux_Bcr_CflA; TIGR00710"
/db_xref="CDD:162006"
misc_feature 397612..398775
/locus_tag="A1E_01785"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(397651..397653,397660..397668,397672..397677,
397726..397728,397735..397740,397747..397749,
397759..397764,397768..397773,397909..397914,
397921..397926,397933..397938,397945..397947,
397981..397986,397993..397998,398014..398016,
398245..398247,398254..398259,398266..398271,
398278..398280,398320..398322,398332..398334,
398344..398346,398353..398355,398365..398367,
398548..398550,398557..398562,398569..398571,
398581..398586,398593..398595,398623..398628,
398635..398640,398647..398652,398659..398661)
/locus_tag="A1E_01785"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(399150..399293)
/locus_tag="A1E_01790"
/db_xref="GeneID:5626479"
CDS complement(399150..399293)
/locus_tag="A1E_01790"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492088.1"
/db_xref="GI:157803539"
/db_xref="GeneID:5626479"
/translation="MNSYRTTDFPIKPDKAVGSMDLSIVALDENGNKPTASTAIFYCS
LCT"
misc_feature complement(<399168..>399293)
/locus_tag="A1E_01790"
/note="120 KDa Rickettsia surface antigen; Region:
120_Rick_ant; pfam12574"
/db_xref="CDD:193084"
gene complement(399405..399518)
/locus_tag="A1E_01795"
/db_xref="GeneID:5626480"
CDS complement(399405..399518)
/locus_tag="A1E_01795"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492089.1"
/db_xref="GI:157803540"
/db_xref="GeneID:5626480"
/translation="MQTTKAELEKIEISGYKKIHEKCRDQIQPKMGKLREY"
gene complement(399878..400150)
/locus_tag="A1E_01800"
/db_xref="GeneID:5626530"
CDS complement(399878..400150)
/locus_tag="A1E_01800"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492090.1"
/db_xref="GI:157803541"
/db_xref="GeneID:5626530"
/translation="MQIAYAVIGYEVVNKTLTDKSTSDVSLLNEITSGKFSKDDTPEV
SNQNGNKVRIEFNKPHFTLQLLGKETTVKIQSVCEEGVTPTRPQNT"
gene complement(400155..400316)
/locus_tag="A1E_01805"
/db_xref="GeneID:5626531"
CDS complement(400155..400316)
/locus_tag="A1E_01805"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492091.1"
/db_xref="GI:157803542"
/db_xref="GeneID:5626531"
/translation="MTRYLDNYLKTFNFPQGVEKITKLVEAFSNNYYKYKNPKENKQI
LEEIYNIKK"
gene complement(400327..400533)
/locus_tag="A1E_01810"
/db_xref="GeneID:5626532"
CDS complement(400327..400533)
/locus_tag="A1E_01810"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492092.1"
/db_xref="GI:157803543"
/db_xref="GeneID:5626532"
/translation="MDTPNYIYKGTKGVAHFFQNLCETTKTDLDFVRKYLADNADVLK
LLLTQVHLEISTRIINKEPEQEDK"
gene complement(400704..402545)
/locus_tag="A1E_01815"
/db_xref="GeneID:5626533"
CDS complement(400704..402545)
/locus_tag="A1E_01815"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492093.1"
/db_xref="GI:157803544"
/db_xref="GeneID:5626533"
/translation="MTGKIANIKTNRVLALSGGGVKGISELIVLIAIEEKTGKSISEL
FPIISGTSVGGLIAALLTIPKELGAKEAKYSAREALEIFKTNANYIFPDNFLGSVKQI
FTHKYSQKPLKELLEKYLGDNRMDSTTSRLVIPVNDLTANGGKLEVFDSFHGYSPHVR
VKDVLLATTAAPTYFKPIMDKAAIQEYNYASGTPYAYADGGLNANRPASEVLKLLKKG
YIHKEQNHTRIDKNLTREEQKEILDHTMVCAFNFSNNIEPTNSIPKIGSDGIIGWLVK
GKLISRLMHNMENSSTTEVKNDLSGKDEFFEVGLPITKETKSLDNASPKNIERLEEIG
YKYVQENNELIQKLCDNLLDNLNKEQAANQTVDLIDGCFAEEENIENNQETINKPITQ
ALEPDDEGFEEEENIENNQETINKPITQALEPDDEGFEEEENIENNQETINKPITQAL
EPDDEGFEEEENIENNQETINKPITQALEPDDEGFEEEENIENNQETINKPITQALEP
DDEGFEEDTEYEKEELLTGIKKFLNAFSEQNPTLKNDIDNFLQTAENYTLNEIKECIV
SFEQASLKWQAEQKKHDVFSSCSMEALKEEMNLEGIDDEVLNHEIIA"
misc_feature complement(401502..402512)
/locus_tag="A1E_01815"
/note="Patatins and Phospholipases; Region:
Patatin_and_cPLA2; cl11396"
/db_xref="CDD:209300"
misc_feature complement(order(401949..401951,402390..402392,
402480..402482,402486..402491))
/locus_tag="A1E_01815"
/note="active site"
/db_xref="CDD:132836"
misc_feature complement(402384..402398)
/locus_tag="A1E_01815"
/note="nucleophile elbow; other site"
/db_xref="CDD:132836"
misc_feature complement(400830..>400976)
/locus_tag="A1E_01815"
/note="Patatins and Phospholipases; Region:
Patatin_and_cPLA2; cl11396"
/db_xref="CDD:209300"
gene complement(403657..403941)
/locus_tag="A1E_01820"
/db_xref="GeneID:5626534"
CDS complement(403657..403941)
/locus_tag="A1E_01820"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492094.1"
/db_xref="GI:157803545"
/db_xref="GeneID:5626534"
/translation="MPSKNYFVKELVLRLSGQYQIKRIIDNHGYGKWVAYFLPESLNE
LIYKEELKIHYHDYDHQISANKEYRYLFKNSNVTKYFIAHKNSLFYLFYR"
gene complement(404050..405441)
/gene="dnaA"
/locus_tag="A1E_01825"
/db_xref="GeneID:5626316"
CDS complement(404050..405441)
/gene="dnaA"
/locus_tag="A1E_01825"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_001492095.1"
/db_xref="GI:157803546"
/db_xref="GeneID:5626316"
/translation="MSTNQIILTDQGDNYLNVWSHVAQDLYNHYGETLYNSWFSKVNF
IESSLNTVILCAPTNFVRDWIKSKYSMVILQLFQHYNNTIKSVEIITKELPGTSKTVI
ELPTKTFADIGSSELNAENIFSTLDVRFTFDNFVVGVPNELAYAAARAVAESTDAVSE
SNPLFLYGGVGLGKTHLMHAIGWYIKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISF
KEKFRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLIDNNRQIVISCDRSPSDLDNIED
RIKSRLGWGLVADVHSTTYELRLGILESKIEQMNVKIPKNVIDFLASKIVSNVRELEG
ALNKVIAHSNFTLKEITLENTQNILRDLLRSNERIITVEDIQKKVASRYNIKLSDMSS
SRRLREVARPRQIAMYLSKTLTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIEL
REEINLLMKILQN"
misc_feature complement(404053..405402)
/gene="dnaA"
/locus_tag="A1E_01825"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature complement(405208..405393)
/gene="dnaA"
/locus_tag="A1E_01825"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature complement(404584..404958)
/gene="dnaA"
/locus_tag="A1E_01825"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(404917..404940)
/gene="dnaA"
/locus_tag="A1E_01825"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(404650..404652,404749..404751,
404914..404937))
/gene="dnaA"
/locus_tag="A1E_01825"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(404746..404763)
/gene="dnaA"
/locus_tag="A1E_01825"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(404611..404613)
/gene="dnaA"
/locus_tag="A1E_01825"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(404059..404328)
/gene="dnaA"
/locus_tag="A1E_01825"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature complement(order(404125..404130,404137..404139,
404146..404160,404185..404193,404209..404211,
404230..404235,404257..404259))
/gene="dnaA"
/locus_tag="A1E_01825"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene complement(405472..405798)
/locus_tag="A1E_01830"
/db_xref="GeneID:5626317"
CDS complement(405472..405798)
/locus_tag="A1E_01830"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492096.1"
/db_xref="GI:157803547"
/db_xref="GeneID:5626317"
/translation="MSVQNICCTKAYNILVSNDNVFLVDVRTREEWKQVGIPHKVIFL
SWQLNKDFEDNFLSIINDKIHAMIFLLFRSGYRSFTAANFITNIGYKNCYNISDLFEG
NNQNKG"
misc_feature complement(405475..405783)
/locus_tag="A1E_01830"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cl00125"
/db_xref="CDD:212175"
misc_feature complement(405583..405585)
/locus_tag="A1E_01830"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene 406123..406386
/locus_tag="A1E_01835"
/db_xref="GeneID:5626318"
CDS 406123..406386
/locus_tag="A1E_01835"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492097.1"
/db_xref="GI:157803548"
/db_xref="GeneID:5626318"
/translation="MNKLNKNSLQKKLLYLSKNRGCKEMDYILGSFTEKYLSLMDEKK
LESYALILDQNDNDLYNWINNKSSAPSYLDIEIIDKLRKIAKV"
misc_feature <406180..406380
/locus_tag="A1E_01835"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2938"
/db_xref="CDD:32761"
gene 406399..409758
/locus_tag="A1E_01840"
/db_xref="GeneID:5626319"
CDS 406399..409758
/locus_tag="A1E_01840"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492098.1"
/db_xref="GI:157803549"
/db_xref="GeneID:5626319"
/translation="MLQQKFPAAAKSFFAIDNLTKNLKQDLILSVSNEEDVLQLYKQA
LFFSSNESIYYFPSYDTVPYDHASPSPSIVSKRAETLTKLTTNNSNSKLLITHAANLL
NKLPPKDFFSKYFLKLFPKMKFTTDELAMFLVENSFTRNTSSVDVGEFVVRGEIIDII
LPGPKAYRINFSWDYIESIKEFDIDTQISTKSCTELVITPVNEIVLNSETIGNFKNNY
LRNFGVNYTDNPLYEAVTSGRKFSGYEQLLPLFYNSCSNLVDYLNDPIIIFDNLSKQA
ILEFERSYNDFYSARSEANKFNRFYPTLAPTRLYFTISEIMELLEQKNNILISYDNSE
QATLIENIRSTSFIEKKIVFDKLFEIIKAHSSKKIVIGVASLSGLERVKSIIQNYEYT
YNEINKLDEAKIGIINIAILPLNQSFDTKEYLFITVSELLEEKPSSINTNKKLKNILL
ELDNLAEGEFVVHKDHGIGKFLKLEALEIKGKLHDFLKILYAGNDKLYIPVENIEVIK
KYGNDNAELDKLGSVSWQRSKAKLKNRIKEIALHLIQIAAQRKLNTNASIEFDLEEYD
KFCAHFPFSETEDQLTAINDIREDLRSGMLMDRLICGDVGFGKTEVAMRAVFMVAKSL
NEYSPQVAVVVPTTILCSQHVSRFTERFKGFGLNIKQLSSIISPKEAKIIRSELESGK
INIIIGTHSLLHKNTKFFNLKLLIIDEEQHFGVSQKEFLKQLKSSSHVLAMSATPIPR
TLQMSMTGLKELSIIATPPLNRLEVRTSVMPFNPVIIRDALLREHFRGGRSFYVVPRI
NDILDIEKQLKQIVPELSYKIVHRKMPYNKIDEVMSEFYAGKFDILVSTTIIESGIDI
QGANTMIIHKADMLGLSQLYQLRGRIGRGKMRGYAYLIVESHKKMTAHSLRRLEIIQN
SCALGSGFTIASHDMDLRGFGNLIGEEQSGQIREVGTELYQEMLEEQIALFKDEPVVS
EQPFIPTINLGLSVFIPDHYVSDSALKIGIYRRIGNLSNEIEVEKFKDEMIDRFGSLP
TEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNADMADKILKFVSTYHSQAKI
KPDNRLVFIKKLVGKNVIVEANQLLWNLAEI"
misc_feature 406399..409755
/locus_tag="A1E_01840"
/note="Transcription-repair coupling factor (superfamily
II helicase) [DNA replication, recombination, and repair /
Transcription]; Region: Mfd; COG1197"
/db_xref="CDD:31390"
misc_feature 407761..408042
/locus_tag="A1E_01840"
/note="CarD-like/TRCF domain; Region: CarD_TRCF;
smart01058"
/db_xref="CDD:198126"
misc_feature 408187..408609
/locus_tag="A1E_01840"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 408214..408228
/locus_tag="A1E_01840"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 408520..408531
/locus_tag="A1E_01840"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 408724..409080
/locus_tag="A1E_01840"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(408784..408795,408859..408864,408937..408945)
/locus_tag="A1E_01840"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(408961..408963,409027..409029,409039..409041,
409048..409050)
/locus_tag="A1E_01840"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 409339..409635
/locus_tag="A1E_01840"
/note="This domain is found in proteins necessary for
strand-specific repair in DNA such as TRCF in Escherichia
coli; Region: TRCF; smart00982"
/db_xref="CDD:198050"
gene 409875..411311
/gene="murE"
/locus_tag="A1E_01845"
/db_xref="GeneID:5626320"
CDS 409875..411311
/gene="murE"
/locus_tag="A1E_01845"
/note="involved in cell wall formation; peptidoglycan
synthesis; cytoplasmic enzyme; catalyzes the addition of
meso-diaminopimelic acid to the nucleotide precursor
UDP-N-aceylmuramoyl-l-alanyl-d-glutamate"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase"
/protein_id="YP_001492099.1"
/db_xref="GI:157803550"
/db_xref="GeneID:5626320"
/translation="MLFNLKQLFQQHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFI
NDALNKGAVLVITDNEKNTAINKVIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGK
SSVISYIAQLYSLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAE
IGIEYLAFEASSHGLDQTRLGENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNH
LLPNAISILNSDIEEIEFIKAYLNKHNIKFITVGIKGDLQITRINSSLKGQNIDFTFN
NRKYSFNTPIIGSFQASNLLIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQIENTNI
FVDYSHTPDALEKALLELKNIQVLGSKLNVIFGCGGNRDKKKRSLMGQIAAKLADNVI
ITDDNPRLEDPKLIRAEIISGIDKANYIEIENREKAIKYGINNLNQDDILLIAGKGHE
NYQIIGNKKIPFDDAEIVKKYIKYHAVT"
misc_feature 409875..411293
/gene="murE"
/locus_tag="A1E_01845"
/note="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional; Region: murE;
PRK00139"
/db_xref="CDD:178894"
misc_feature 409914..410132
/gene="murE"
/locus_tag="A1E_01845"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 410163..410750
/gene="murE"
/locus_tag="A1E_01845"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 410838..411095
/gene="murE"
/locus_tag="A1E_01845"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 411460..412968
/locus_tag="A1E_01850"
/db_xref="GeneID:5626254"
CDS 411460..412968
/locus_tag="A1E_01850"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492100.1"
/db_xref="GI:157803551"
/db_xref="GeneID:5626254"
/translation="MIWNSETLSKALGITISNSINCNEVQFNSKDVKKGDLFIALKGN
GDGHDYVLDAIDKGANAIIVSKHIDIVDKNKIILVDDCFEALQKMALYKRGSSKAKFI
AITGSVGKTSTKGALKTLLTETSDKSLHLLYNEANKEEFEGNTEYSTTEYKKVCDAAS
TRLTYKLPLEVSYIKGLVFASRGNFNNHLGLLINLASMSDDTEYAIFELGMNHKGEIR
ELVQILKPNIAMITNVSEAHLEFFNSLEDIAEAKCEIFENFSKNDIAVINANTNCYNK
ILSILKNLSIDKIYNFGASYNTSAELTLYANLGKQVHLKYKINNKTIEITIPFIPRHF
AENYIGVLLIINILGKNLDIAANHLANISPTKGRGEMINIQNCCVICDYYNASPQSMK
AALEYLKQVPAENKTAIIGDMLELGQNSEALHKELVPYILDADCSKVFLVGKNTKYIY
NLLPFKIAKKYFKNVDELITHITVTDLFKNNELILIKGSRGIKLDKIVDCYK"
misc_feature 411532..411741
/locus_tag="A1E_01850"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 411538..412962
/locus_tag="A1E_01850"
/note="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Region: murF; TIGR01143"
/db_xref="CDD:200077"
misc_feature 411850..411984
/locus_tag="A1E_01850"
/note="Rickettsial palindromic element RPE1 domain;
Region: RPE1; TIGR01045"
/db_xref="CDD:162172"
misc_feature 411982..412464
/locus_tag="A1E_01850"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 412552..412794
/locus_tag="A1E_01850"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 413061..414146
/gene="mraY"
/locus_tag="A1E_01855"
/db_xref="GeneID:5626255"
CDS 413061..414146
/gene="mraY"
/locus_tag="A1E_01855"
/note="First step of the lipid cycle reactions in the
biosynthesis of the cell wall peptidoglycan"
/codon_start=1
/transl_table=11
/product="phospho-N-acetylmuramoyl-pentapeptide-
transferase"
/protein_id="YP_001492101.1"
/db_xref="GI:157803552"
/db_xref="GeneID:5626255"
/translation="MLYNLLLPHIHNSHIANLFHYITFRSGLAIIITLSLSFVTGPIL
IKFLRTLQKNGQPIRLDGPESHQTKAGTPTMGGIMIILSSCLATLLLADLTNKYIWIT
LFGFISFGIIGFMDDYAKVTKNNHYGVRGKSKLLLQGIISLIICILLEYTDKNPSHLL
NIPFFKNLSLDLGYFYIVFAIFVIVGSSNAVNLTDGLDGLATVPIAFTAGSFALISYL
VGNLIYSNYLQLTYIPNTGELTVLCAGLVGSCLGFLWFNAQPAEVFMGDTGSLSLGSI
LGIISVITKHEVVLSIVGGLFVVETTSVILQVYYFKATKGKRIFKMAPLHHHFEKHGW
EESKVVIRFWIISVIFALIGLSSLKLR"
misc_feature 413106..414143
/gene="mraY"
/locus_tag="A1E_01855"
/note="phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional; Region: mraY; PRK00108"
/db_xref="CDD:178869"
misc_feature 413244..414131
/gene="mraY"
/locus_tag="A1E_01855"
/note="Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of...;
Region: GT_MraY; cd06852"
/db_xref="CDD:133462"
misc_feature 413406..413411
/gene="mraY"
/locus_tag="A1E_01855"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133462"
misc_feature 413850..413861
/gene="mraY"
/locus_tag="A1E_01855"
/note="putative catalytic motif [active]"
/db_xref="CDD:133462"
misc_feature order(414012..414014,414030..414044)
/gene="mraY"
/locus_tag="A1E_01855"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:133462"
gene 414312..415991
/locus_tag="A1E_01860"
/db_xref="GeneID:5626256"
CDS 414312..415991
/locus_tag="A1E_01860"
/note="COG0472 UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N-acetylglucosamine-1-phosphate
transferase"
/codon_start=1
/transl_table=11
/product="Actin polymerization protein RickA"
/protein_id="YP_001492102.1"
/db_xref="GI:157803553"
/db_xref="GeneID:5626256"
/translation="MAKETKETKETKETKETDINKLLTQENNALNTILRQVNELCEQN
QKLQGVLEIQNEAKELEKEHNRSLPWFKKFVKTVSNVKYIFIKSEEQLTHEAIKHNTK
ILKDIDNKIYNIVAKSAPLKQALQEEIKKNFEDLTKKDLSKDQRERLAELFFSYKDKP
ERFSALRMTHPLQFTNAAVLENQYNALNTTKQNIRNLISENSNIKELKEIQKQVAEIR
EEIPHTFFEKLNSIWQNVKNVFINNSEQVLAKNKESNTRAIRKIEEQLYSTKHQFEKL
IENQEKNINDIIGKLPDNEKLQKIVSNLADHMTAKKEPILTTSSLTKPLENNMPPPPP
PPPLPQNNMPPPPPPPPLPQNNMPPPPPPPPLPQNNMPPPPPPPPPLPQNNMPPPPPP
MPTMAPAQTETLLKSIEATTVKNPENQSHPSIDTSDLMKEIVGPRNLKEVKKIDAKAQ
DPRDLLLQSIRGEHKLKKVEFDPNGRPVAHSRSKPAQNVNKSNEIVEILARRVAMEMS
SSGSESDSDSGNWSDVSTKSKVLKTKGERDARKGMNSKQVGRNSKSSFVRS"
gene complement(416516..416677)
/locus_tag="A1E_01865"
/db_xref="GeneID:5626257"
CDS complement(416516..416677)
/locus_tag="A1E_01865"
/note="COG2057 Acyl CoA:acetate/3-ketoacid CoA
transferase, beta subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492103.1"
/db_xref="GI:157803554"
/db_xref="GeneID:5626257"
/translation="MPTIDLTLLGAMQSHKKAILPNWNYLPGKMVKDMEGAMDLATNN
QKTSSNNGT"
misc_feature complement(<416552..>416668)
/locus_tag="A1E_01865"
/note="SugarP_isomerase: Sugar Phosphate Isomerase family;
includes type A ribose 5-phosphate isomerase (RPI_A),
glucosamine-6-phosphate (GlcN6P) deaminase, and
6-phosphogluconolactonase (6PGL). RPI catalyzes the
reversible conversion of ribose-5-phosphate to...; Region:
SugarP_isomerase; cl00339"
/db_xref="CDD:206995"
gene complement(416760..416924)
/locus_tag="A1E_01870"
/db_xref="GeneID:5626258"
CDS complement(416760..416924)
/locus_tag="A1E_01870"
/note="COG1788 Acyl CoA:acetate/3-ketoacid CoA
transferase, alpha subunit"
/codon_start=1
/transl_table=11
/product="succinyl-CoA:3-ketoacid-coenzyme A transferase"
/protein_id="YP_001492104.1"
/db_xref="GI:157803555"
/db_xref="GeneID:5626258"
/translation="MAGAAKVTVCEVETIVEVGELYPNNIHTPNIFIQRLIVGTKYEK
RIEQLTIREQ"
misc_feature complement(416802..>416924)
/locus_tag="A1E_01870"
/note="SugarP_isomerase: Sugar Phosphate Isomerase family;
includes type A ribose 5-phosphate isomerase (RPI_A),
glucosamine-6-phosphate (GlcN6P) deaminase, and
6-phosphogluconolactonase (6PGL). RPI catalyzes the
reversible conversion of ribose-5-phosphate to...; Region:
SugarP_isomerase; cl00339"
/db_xref="CDD:206995"
gene complement(417034..417243)
/locus_tag="A1E_01875"
/db_xref="GeneID:5626239"
CDS complement(417034..417243)
/locus_tag="A1E_01875"
/codon_start=1
/transl_table=11
/product="succinyl-CoA:3-ketoacid-coenzyme A transferase"
/protein_id="YP_001492105.1"
/db_xref="GI:157803556"
/db_xref="GeneID:5626239"
/translation="MISSYIGENKICEQQYLDKILELELKPQGTLDERIRAACMGIPP
FYTKIGIGTIVEEGKEKRNLIARNI"
misc_feature complement(<417052..>417243)
/locus_tag="A1E_01875"
/note="SugarP_isomerase: Sugar Phosphate Isomerase family;
includes type A ribose 5-phosphate isomerase (RPI_A),
glucosamine-6-phosphate (GlcN6P) deaminase, and
6-phosphogluconolactonase (6PGL). RPI catalyzes the
reversible conversion of ribose-5-phosphate to...; Region:
SugarP_isomerase; cl00339"
/db_xref="CDD:206995"
gene 418000..418290
/locus_tag="A1E_01880"
/db_xref="GeneID:5626240"
CDS 418000..418290
/locus_tag="A1E_01880"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492106.1"
/db_xref="GI:157803557"
/db_xref="GeneID:5626240"
/translation="MFSTKFNDKDKNGNDINAYVKVMSSIYGYITKNKICSYAYLDLF
DSFLFYSGYSFIMNTNINNITMFKLEKYLLSTRVMLAPYGLEYSLVNHFCCG"
gene 418398..418607
/locus_tag="A1E_01885"
/db_xref="GeneID:5626241"
CDS 418398..418607
/locus_tag="A1E_01885"
/note="COG1788 Acyl CoA:acetate/3-ketoacid CoA
transferase, alpha subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492107.1"
/db_xref="GI:157803558"
/db_xref="GeneID:5626241"
/translation="MAFWNQPKILTATHLKESCRQGRLGVVNFELSLNKTFKIFGSGG
YKTAEFIEGMTLKSSAILRAWFKLD"
gene 418671..420788
/locus_tag="A1E_01890"
/db_xref="GeneID:5626242"
CDS 418671..420788
/locus_tag="A1E_01890"
/note="COG1200 RecG-like helicase"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecG"
/protein_id="YP_001492108.1"
/db_xref="GI:157803559"
/db_xref="GeneID:5626242"
/translation="MLTILEKFLFSSVKTFINIREDTVSALKRLGINNIRDLLFYIPV
SYQNKTLSPNLTKVRDGEIIQTEIVIESISLPKNSNQPLKITARNDTGSLLLVFFHRP
PPFIFNKLKVGTSHIISGKVQFFDHHLQISHPEFIVNPTLAKEIEPIYSLTYLLSNKQ
LYSYIIKAMDIFERKCKGLEDKEVKDYLDSILQNLKVLHSLCHLRKSRNSEKMDIMVK
SWDDTRVCLNNAKKHLAAKELIANQISLFNVRTQISRRQGNIFPKAAGPQVNILNELG
FELTPYQKQVIEEIELDQSDKVEMMRLLQGDVGSGKTLVALLTMVNVAVAGFQATLMA
PTDLLANQHYEFFVKALKNTNIRVGLLTGKILGLARKNIMIQLENGEIEILLGTHALF
QEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMT
ISKLQGKPKNRLPIATNIMSTNKIEHVIEAINKKLILGERIYWICPLIERGKQEEQED
DSVLMDVMNRFNSIENIYQGYTGIIHGKMKNEQKDIIMKQFKEGEIKILVATTVIEVG
IDVPEATLIIIENAEQFGLAQLHQLRGRVGRGNLQSYCILLYNPKRLGQVARGRFEIM
QQTNDGFYIAEQDLKLRGSGEILGVKQSGEIEFFFADLAEHYDLLLKANKFAEIGSKG
NLDFIDFQIKLFAKSQVSEFGLV"
misc_feature 418671..420761
/locus_tag="A1E_01890"
/note="RecG-like helicase [DNA replication, recombination,
and repair / Transcription]; Region: RecG; COG1200"
/db_xref="CDD:31393"
misc_feature 418872..419084
/locus_tag="A1E_01890"
/note="RecG_wedge_OBF: A subfamily of OB folds
corresponding to the OB fold found in the N-terminal
(wedge) domain of Escherichia coli RecG. RecG is a
branched-DNA-specific helicase, which catalyzes the
interconversion of a DNA replication fork to a...; Region:
RecG_wedge_OBF; cd04488"
/db_xref="CDD:72960"
misc_feature order(418893..418895,418914..418916,418965..418967,
418983..418985,419061..419063)
/locus_tag="A1E_01890"
/note="ssDNA binding site; other site"
/db_xref="CDD:72960"
misc_feature order(419013..419015,419019..419021,419025..419027,
419082..419084)
/locus_tag="A1E_01890"
/note="generic binding surface II; other site"
/db_xref="CDD:72960"
misc_feature 419574..419978
/locus_tag="A1E_01890"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 419595..419609
/locus_tag="A1E_01890"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 419889..419900
/locus_tag="A1E_01890"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 420087..420491
/locus_tag="A1E_01890"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(420156..420167,420270..420275,420348..420356)
/locus_tag="A1E_01890"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(420372..420374,420438..420440,420450..420452,
420459..420461)
/locus_tag="A1E_01890"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(421027..421248)
/locus_tag="A1E_01895"
/db_xref="GeneID:5626243"
CDS complement(421027..421248)
/locus_tag="A1E_01895"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492109.1"
/db_xref="GI:157803560"
/db_xref="GeneID:5626243"
/translation="MLRIFYEKLGSIFFNHKAEKHFKIHMLLDPEHEQIAIDLLKQIN
INNSSLLAIQKSWDIIEALCTRIAEITQD"
gene complement(421668..422414)
/locus_tag="A1E_01900"
/db_xref="GeneID:5626296"
CDS complement(421668..422414)
/locus_tag="A1E_01900"
/note="COG1135 ABC-type metal ion transport system, ATPase
component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492110.1"
/db_xref="GI:157803561"
/db_xref="GeneID:5626296"
/translation="MIITRNKHQSNYQDLLKTLAIIAMIIDHMGLYLYPELTIMRVIG
RTVMPVFCFFTGYNFHDKPKTKIIIAGILLQIYTTVLFKQFITTNILIPIYLGQCYIY
YFRKSLIHFFYSGYCHVIIMAILFHISWYLVDYGTIVIAIMILGFIAQHEQANLKLSC
FIAIFITCMHSTLFTLAIPMSDFNFSNTDLILNLTILTVTYILMIISDYSQKIAINLK
WISRNILYIYCIHSMILQFIYKYTYSFKNW"
misc_feature complement(<421878..422384)
/locus_tag="A1E_01900"
/note="TraX protein; Region: TraX; pfam05857"
/db_xref="CDD:147811"
gene complement(422411..423916)
/locus_tag="A1E_01905"
/db_xref="GeneID:5626297"
CDS complement(422411..423916)
/locus_tag="A1E_01905"
/codon_start=1
/transl_table=11
/product="virulence factor mviN"
/protein_id="YP_001492111.1"
/db_xref="GI:157803562"
/db_xref="GeneID:5626297"
/translation="MTLFRSGVVVAFCTLISRIFGLVREQFIASLFGSTPMGDSINVA
FKLPNLFRRIFAEGALSSIFIPIYNEKMLISKRAANNFSGTVFTLLLLTLIIIIALMQ
IFMPQLMLFIAPGFHGKKEKFELTIFLCRITIPYLIFVSLTALLGGILNSIKKFTAFA
FSPVILSVCVIICTLMLDDYIESTISISLSLIIAGILQVSFMFVCVKRADLNFPIIFN
PSDPDVKKLLINMGPAIISSGVQQLNLFISQSIASFIEGAISILAYADRIYQFPLSII
GTSFSTILLPTLSKIYKSNDLVSAKKIQNNAIRMGLLLSLPATFGIIILSHPIINIIY
ERGVFTSQDTTNTAEAISAFALGLPAFILAKILTPIFYANGDTKTPLKITLFSIIINT
GINLLLMDSLKHIGIAVGTSIAAWYNLGLLYSYTTKQNKLHIEANIKLFCGKILLCCI
IMSVIIALIKHYCLEYFYSEYLLIKVCMLGSTIAVGIGSFFGTAYLLKVVL"
misc_feature complement(422489..423835)
/locus_tag="A1E_01905"
/note="MviN-like protein; Region: MVIN; pfam03023"
/db_xref="CDD:111867"
gene 423983..424096
/locus_tag="A1E_01910"
/db_xref="GeneID:5626298"
CDS 423983..424096
/locus_tag="A1E_01910"
/note="COG0728 Uncharacterized membrane protein, putative
virulence factor"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492112.1"
/db_xref="GI:157803563"
/db_xref="GeneID:5626298"
/translation="MDTTLSLQATVESMAKPEESNKNMLYKLAFFTGLLRE"
gene complement(424195..424722)
/locus_tag="A1E_01915"
/db_xref="GeneID:5626299"
CDS complement(424195..424722)
/locus_tag="A1E_01915"
/note="catalyzes the hydrolysis of pyrophosphate to
phosphate"
/codon_start=1
/transl_table=11
/product="inorganic pyrophosphatase"
/protein_id="YP_001492113.1"
/db_xref="GI:157803564"
/db_xref="GeneID:5626299"
/translation="MFIDKIKAKANNDEINVIIEIPMNSGPIKYEFDKESGAVFVDRF
MQTTMSYPCNYGFIPHTLSNDGDPVDVLVVSHHAVVPGSVIKCRTIGVLMMEDESGLD
EKIIAVPTSRLDITFDHIKELDNLCEMLRKRIVHFFEHYKDLEKGKWVKVTGWGNKAK
ADTLINEGIDRASQE"
misc_feature complement(424213..424686)
/locus_tag="A1E_01915"
/note="Inorganic pyrophosphatase. These enzymes hydrolyze
inorganic pyrophosphate (PPi) to two molecules of
orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers;
Region: pyrophosphatase; cd00412"
/db_xref="CDD:29533"
misc_feature complement(order(424489..424494,424651..424656))
/locus_tag="A1E_01915"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29533"
misc_feature complement(order(424297..424302,424558..424560,
424594..424596,424636..424638))
/locus_tag="A1E_01915"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29533"
misc_feature complement(order(424417..424419,424432..424434,
424513..424515,424528..424530,424630..424632))
/locus_tag="A1E_01915"
/note="metal binding sites [ion binding]; metal-binding
site"
/db_xref="CDD:29533"
gene complement(424973..425359)
/locus_tag="A1E_01920"
/db_xref="GeneID:5626300"
CDS complement(424973..425359)
/locus_tag="A1E_01920"
/note="CycJ; periplasmic heme chaperone that binds heme
transiently via a histidine residue and delivers it to
newly synthesized and exported c-type cytochromes;
requires the ATP hydrolysis activity of the CcmA protein
in order to transfer the heme to the apocytochrome; part
of the cytochrome c maturation system; periplasmic protein
anchored to the inner membrane"
/codon_start=1
/transl_table=11
/product="cytochrome c-type biogenesis protein CcmE"
/protein_id="YP_001492114.1"
/db_xref="GI:157803565"
/db_xref="GeneID:5626300"
/translation="MQKRVRNRLITIIICFCSAFLGIGIILYNLENNIVFFLPPSKIN
AIEQDKELRVGGLVKTSSINKIAADKISFIITDNIKDLEILYQGILPALFREGQGIIA
IGQLSDGKFMARQLLTKHDENYRPTR"
misc_feature complement(424982..425359)
/locus_tag="A1E_01920"
/note="cytochrome c-type biogenesis protein CcmE;
Reviewed; Region: PRK13254"
/db_xref="CDD:183920"
gene complement(425461..426078)
/locus_tag="A1E_01925"
/db_xref="GeneID:5626337"
CDS complement(425461..426078)
/locus_tag="A1E_01925"
/note="COG1999 Uncharacterized protein SCO1/SenC/PrrC,
involved in biogenesis of respiratory and photosynthetic
systems"
/codon_start=1
/transl_table=11
/product="Sco2 protein precursor"
/protein_id="YP_001492115.1"
/db_xref="GI:157803566"
/db_xref="GeneID:5626337"
/translation="MKMQSNVIKIIIIISLLIGVGALYLLLSLRTPAKPLAGQVNIYE
DNVKIGGDFELIDQNGEIFNSDELKGNLSLIYFGFTRCPDICPTSLNKMTEIVEMLNK
HNIDIIPLFITIDSKRDTPIVLKEYLKHFHPKFIGLTGNEQQIKDITNKFKVFYARVN
NDDDDPNYMFDHSSFIYLMDTNGKYLKHFYLDSSPKEIIEFLRNE"
misc_feature complement(425467..425988)
/locus_tag="A1E_01925"
/note="Uncharacterized protein SCO1/SenC/PrrC, involved in
biogenesis of respiratory and photosynthetic systems
[General function prediction only]; Region: COG1999"
/db_xref="CDD:32182"
misc_feature complement(425509..425934)
/locus_tag="A1E_01925"
/note="SCO (an acronym for Synthesis of Cytochrome c
Oxidase) family; composed of proteins similar to Sco1, a
membrane-anchored protein possessing a soluble domain with
a TRX fold. Members of this family are required for the
proper assembly of cytochrome c...; Region: SCO; cd02968"
/db_xref="CDD:48517"
misc_feature complement(order(425563..425565,425821..425823,
425833..425835))
/locus_tag="A1E_01925"
/note="Cu(I) binding site [ion binding]; other site"
/db_xref="CDD:48517"
gene complement(426084..427646)
/gene="secD"
/locus_tag="A1E_01930"
/db_xref="GeneID:5626338"
CDS complement(426084..427646)
/gene="secD"
/locus_tag="A1E_01930"
/note="part of the preprotein secretory system; when
complexed with proteins SecF and YajC, SecDFyajC
stimulates the proton motive force-driven protein
translocation, and appears to be required for the release
of mature proteins from the extracytoplasmic side of the
membrane"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecD"
/protein_id="YP_001492116.1"
/db_xref="GI:157803567"
/db_xref="GeneID:5626338"
/translation="MPNLPKWKIFLSIICTVFATICALPNFMQVNSKFLPHDSVNLGL
DLRGGAHLLLDVDFESYLNDSMENLADTLRKNFREDKIGYKNLLVNQNQNSIQLELRT
SKELKQLKKIINKIDSEIIVEVNENKIKLRYSDSRLNDLLNKVVDQSIEIVRMRVDST
GTKEPTLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVP
VGSMLIKGDSESHGEYYVVIKKKVVLGGDQLTTASVSFDQNSQAVVTFSFNNLGSKIF
GEITKNNTGKRLAIVLDNKLLSAPMINGAIMGGSGIITGNFTVESAHELALLLRAGSL
PAPLNIIEERSIGPNLGADSIESGKKAGLIGFIAVCIFMIWSYGVLGLFANIALSLAL
LYILALLSLFQATLTLPGIAGIILTIGMAVDANVLIYERIKEELHKGVSNLYAIRTGF
ASAFATILDSNLTTLIVASLLYIFGVGAIKGFAITLTIGIISSMFSAIIITKLLIDIW
VKYFKSKKLGLV"
misc_feature complement(426090..427628)
/gene="secD"
/locus_tag="A1E_01930"
/note="preprotein translocase subunit SecD; Reviewed;
Region: secD; PRK05812"
/db_xref="CDD:180271"
misc_feature complement(<427476..427547)
/gene="secD"
/locus_tag="A1E_01930"
/note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549"
/db_xref="CDD:116168"
misc_feature complement(426153..426845)
/gene="secD"
/locus_tag="A1E_01930"
/note="protein-export membrane protein, SecD/SecF family;
Region: 2A0604s01; TIGR00916"
/db_xref="CDD:162105"
gene complement(427630..428067)
/gene="yajC"
/locus_tag="A1E_01935"
/db_xref="GeneID:5626339"
CDS complement(427630..428067)
/gene="yajC"
/locus_tag="A1E_01935"
/note="member of preprotein translocase; forms a
heterotrimer with SecD and SecF; links the
SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG
complex"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit YajC"
/protein_id="YP_001492117.1"
/db_xref="GI:157803568"
/db_xref="GeneID:5626339"
/translation="MSAITQDNQANHNDTIEIQETEVVPVETNSLQSGLTSLIPMILI
FAIFYFLLLRPQEKRRKEREKLANKVKKGEEVLTNSGIYGIVSKVSANDPNIEIEIAK
DVHIKILKSTIIDITSHSKEVPVKKENNKNNKKDKKVSSAKSS"
misc_feature complement(427714..427986)
/gene="yajC"
/locus_tag="A1E_01935"
/note="preprotein translocase subunit YajC; Validated;
Region: yajC; PRK05585"
/db_xref="CDD:180149"
gene complement(428567..428641)
/locus_tag="A1E_t05700"
/db_xref="GeneID:5626340"
tRNA complement(428567..428641)
/locus_tag="A1E_t05700"
/product="tRNA-Gly"
/db_xref="GeneID:5626340"
gene complement(430629..431999)
/locus_tag="A1E_01940"
/db_xref="GeneID:5626341"
CDS complement(430629..431999)
/locus_tag="A1E_01940"
/codon_start=1
/transl_table=11
/product="magnesium transporter"
/protein_id="YP_001492118.1"
/db_xref="GI:157803569"
/db_xref="GeneID:5626341"
/translation="MPNFNIFKRILPDHHDQFAEIFDQINDLLEDHNYDAAANRLAEL
HYADLADFLDNLNNKIYKIIIPLLQDKIKPETLVSLNAYSKPLIIETLGIKKSAELIN
KLVIEDAIEVVIDLDDDIKDLILSNLTKEKKHQITVGCTYPENTVGRVIERDFINLQE
NWTVEESLNFIKNVKNDFYAAIVTDNKLRPIGIISLSTLIKGKKNELIKDLMSKDFKL
ADAFTDLNELSFIFRQYALTIVPVVNKSGKLVGSVSIDNIIYIIEEQAGKDILSLSGV
HTQDTFFNVLYTVKHRFPWLFVNLITACMTSLIINHFNDTIAKLVTLAATMPIVASMG
GNAGTQVMTVTVRALANKDIHYNNVNKVILKEIAVSAFNGFVLAIIGAGLSFIMLLDL
NLSVIFAIAVILNFLVAGLFGSAIPIILHYFDIDPAAGSGVFLTTITDALGFLTFLSL
AHIFLV"
misc_feature complement(430632..431936)
/locus_tag="A1E_01940"
/note="Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism]; Region: MgtE;
COG2239"
/db_xref="CDD:32420"
misc_feature complement(431565..431870)
/locus_tag="A1E_01940"
/note="MgtE intracellular N domain; Region: MgtE_N;
pfam03448"
/db_xref="CDD:146204"
misc_feature complement(431214..431528)
/locus_tag="A1E_01940"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domain in the
magnesium transporter, MgtE. MgtE and its homologs are
found in eubacteria, archaebacteria, and eukaryota.
Members of this family transport Mg2+ or other...; Region:
CBS_pair_Mg_transporter; cd04606"
/db_xref="CDD:73106"
misc_feature complement(430647..431021)
/locus_tag="A1E_01940"
/note="Divalent cation transporter; Region: MgtE;
pfam01769"
/db_xref="CDD:110745"
gene complement(432412..432534)
/locus_tag="A1E_01945"
/db_xref="GeneID:5626596"
CDS complement(432412..432534)
/locus_tag="A1E_01945"
/note="COG2239 Mg/Co/Ni transporter MgtE (contains CBS
domain)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492119.1"
/db_xref="GI:157803570"
/db_xref="GeneID:5626596"
/translation="MVREYFSATSGNVTDDMINEYINRHTDAHEPAMTTNIRLE"
misc_feature complement(432460..>432528)
/locus_tag="A1E_01945"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:242138"
gene complement(432564..432743)
/locus_tag="A1E_01950"
/db_xref="GeneID:5626597"
CDS complement(432564..432743)
/locus_tag="A1E_01950"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492120.1"
/db_xref="GI:157803571"
/db_xref="GeneID:5626597"
/translation="MREIIAVVVEELNVKIENGVISSDHIHIFANIPPHIKVSEFVQK
AKGRSSKKYKKNFQY"
misc_feature complement(<432615..>432743)
/locus_tag="A1E_01950"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene 432878..433147
/locus_tag="A1E_01955"
/db_xref="GeneID:5626598"
CDS 432878..433147
/locus_tag="A1E_01955"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492121.1"
/db_xref="GI:157803572"
/db_xref="GeneID:5626598"
/translation="MAQHGKLKLSHLEDGGFNHQRDYKNLDIVIVTTLLECGSEQNKC
IGRRVICYNCRIVGQTFGNKRKLEVKIKSKVPKQKKFRVMVSEQR"
gene complement(433200..433286)
/locus_tag="A1E_t05702"
/db_xref="GeneID:5626599"
tRNA complement(433200..433286)
/locus_tag="A1E_t05702"
/product="tRNA-Leu"
/db_xref="GeneID:5626599"
gene complement(433475..434335)
/locus_tag="A1E_01960"
/db_xref="GeneID:5626312"
CDS complement(433475..434335)
/locus_tag="A1E_01960"
/note="COG0647 Predicted sugar phosphatases of the HAD
superfamily"
/codon_start=1
/transl_table=11
/product="HAD family hydrolase"
/protein_id="YP_001492122.1"
/db_xref="GI:157803573"
/db_xref="GeneID:5626312"
/translation="MNILKLKNIFDIIDNYDVFLFDLWGVIIEGGHTYQNVVQNINKI
IERKKVYFVTNAPQNIFSLHQTIKSWGLNAEPEMIISSGEIAVQMILESKERFGIEKP
VIYHLGHLENDIINGIQYSTTDDIKKANIFLMTIYRDENENLDLNEFDELFKIVVERK
MVNICANPDLGINQHGVYRYCSGYYAEKIKQLGGEIIYSGKPYEEIYSKIFKECHNTP
KNRILMIGDTFYTDILAANRLGIDSALVLTGNSRAYHINFDNIDEKLDSLTKSAIKQS
IMPNFMLSLS"
misc_feature complement(433592..434311)
/locus_tag="A1E_01960"
/note="HAD-superfamily class IIA hydrolase, TIGR01459;
Region: HAD-SF-IIA-hyp4"
/db_xref="CDD:130526"
misc_feature complement(434012..434281)
/locus_tag="A1E_01960"
/note="Haloacid dehalogenase-like hydrolase; Region:
Hydrolase_6; pfam13344"
/db_xref="CDD:205524"
misc_feature complement(433598..>433786)
/locus_tag="A1E_01960"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
gene 434443..436869
/gene="gyrB"
/locus_tag="A1E_01965"
/db_xref="GeneID:5626313"
CDS 434443..436869
/gene="gyrB"
/locus_tag="A1E_01965"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_001492123.1"
/db_xref="GI:157803574"
/db_xref="GeneID:5626313"
/translation="MSEIEENFNKSSYGADSIKVLKGLEAVRKRPGMYIGDVGNGSGL
HHMIYEVVDNAIDESLAGYCDLVQVILNKNGSVTVSDNGRGIPVEIHEEEGISAAEVI
MTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITEA
PLAVVKENIDKKGTEVTFFPSVETFTNIEFDFGTIEHRLRELAFLNSGIKILLVDNRF
EEAKEAEFYYTGGIEAYVKYIDRAKHAIHPCIIVNVDNAESGINLELAMHWNDSYYEN
ILCFTNNIRQRDGGTHLSAFKSAITRVITSYLDTTGLNKKVKNDFSGEDTREGLCCVL
SVKVPDPKFSSQTKDKLVSSEVRPVVENIVYTKVLEWFEEHPAEARAIISKIMEAANA
REAARKAREFTRRKSALEISNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSK
IQAILPLRGKILNVERARFDKMLGSDQIGTLITALGTGVDNQEFSLEKLRYHKVIIMT
DADVDGSHIRTLLLTFFYRNMPELINKGYLYIAQPPLYKVKKGAAEFYLKNEQALQDY
LIKSTINDATLILDGKEQLVDGNLEELINTVVKFNGCLDHASKKFNRSITEILAINDL
LNNKIFEAESDLRCKKALDVLNSLEESPDKTNWEVLKHENKIEFFRFNRGLKESKILL
KEQLESFEFVQISKLALTIFDIFCKQLKLIVKSQECDILTPSQLLNTIIACGKKGINI
QRFKGLGEMNSNQLWETTLDPEKRTLLQVRVAEVDEAEGIFSTLMGDVVEPRRLFIQA
NALNVVNLDV"
misc_feature 434467..436866
/gene="gyrB"
/locus_tag="A1E_01965"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 434572..>434721
/gene="gyrB"
/locus_tag="A1E_01965"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 434602..434604
/gene="gyrB"
/locus_tag="A1E_01965"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(434689..434691,434695..434697)
/gene="gyrB"
/locus_tag="A1E_01965"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 435130..435603
/gene="gyrB"
/locus_tag="A1E_01965"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 435286..435288
/gene="gyrB"
/locus_tag="A1E_01965"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(435460..435462,435469..435474,435478..435480)
/gene="gyrB"
/locus_tag="A1E_01965"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(435478..435480,435484..435486)
/gene="gyrB"
/locus_tag="A1E_01965"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 435727..436071
/gene="gyrB"
/locus_tag="A1E_01965"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(435745..435750,435757..435759,435967..435969,
435973..435975,435979..435981)
/gene="gyrB"
/locus_tag="A1E_01965"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(435745..435747,435967..435969)
/gene="gyrB"
/locus_tag="A1E_01965"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 436639..436833
/gene="gyrB"
/locus_tag="A1E_01965"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 437074..438333
/locus_tag="A1E_01970"
/db_xref="GeneID:5626314"
CDS 437074..438333
/locus_tag="A1E_01970"
/note="adds enolpyruvyl to UDP-N-acetylglucosamine as a
component of cell wall formation; gram-positive bacteria
have 2 copies of MurA which are active"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine
1-carboxyvinyltransferase"
/protein_id="YP_001492124.1"
/db_xref="GI:157803575"
/db_xref="GeneID:5626314"
/translation="MQKLIIYGGKPLRGSINISGAKNAVLPIMAASILTDKLHITNVP
KLTDVSTMKGLLRSHGADIETIEHQDEFELIINTRNINNFTADYDIVRKMRASIWVLG
PLLTKYGKAKVSLPGGCAIGARQVDLHIAVLKAMGAMIEIEGGYINASSKGRLKGTHF
IFDKVSVGATINAILAAVLAEGETLLFNCGREPEIVDLCNCLIKMGADIIGVGTSEIT
IKGKDALNKVSYKVLSDRIEAGTYMLAAAITKGDVKICGIDYHIIENLALKLIETGIK
VVPIDNGVQVIYEGKLNAVNLETNPYPGFATDLQAQFMSLMTLSSGVSMITENIFENR
FMHVPELCRMGADILVRGNKAIVRGVEMLKGAEVMASDLRASVSLILAGLSTNSKTVL
HRIYHLDRGFQDLEKKLSNCGADIKRV"
misc_feature 437074..438327
/locus_tag="A1E_01970"
/note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
Region: murA; TIGR01072"
/db_xref="CDD:162190"
misc_feature 437107..438309
/locus_tag="A1E_01970"
/note="UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate +
UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
/db_xref="CDD:30128"
misc_feature order(437125..437136,437767..437778)
/locus_tag="A1E_01970"
/note="hinge; other site"
/db_xref="CDD:30128"
misc_feature order(437140..437142,437356..437358,437368..437370,
437443..437460,437563..437565,437572..437577,
437995..437997)
/locus_tag="A1E_01970"
/note="active site"
/db_xref="CDD:30128"
gene 438501..438884
/gene="rpoZ"
/locus_tag="A1E_01975"
/db_xref="GeneID:5626315"
CDS 438501..438884
/gene="rpoZ"
/locus_tag="A1E_01975"
/note="Promotes RNA polymerase assembly; latches the N-
and C-terminal regions of the beta' subunit thereby
facilitating its interaction with the beta and alpha
subunits"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit omega"
/protein_id="YP_001492125.1"
/db_xref="GI:157803576"
/db_xref="GeneID:5626315"
/translation="MARVTAEDCNKIIPDRFRLVVLATRYAKLLNYKVETSYSKKEKR
DKPPVIALRRIAAGKVSVAQLEQDLINSLCTRNIIEPLANQDDLEDVEEKFDYLPEVY
VGEDYSDLDDQIFIDENGEYDERDK"
misc_feature 438501..438683
/gene="rpoZ"
/locus_tag="A1E_01975"
/note="DNA-directed RNA polymerase, omega subunit; Region:
rpoZ; TIGR00690"
/db_xref="CDD:188073"
gene 438885..439280
/gene="acpS"
/locus_tag="A1E_01980"
/db_xref="GeneID:5625950"
CDS 438885..439280
/gene="acpS"
/locus_tag="A1E_01980"
/note="Catalyzes the formation of holo-ACP, which mediates
the essential transfer of acyl fatty acid intermediates
during the biosynthesis of fatty acids and lipids"
/codon_start=1
/transl_table=11
/product="4'-phosphopantetheinyl transferase"
/protein_id="YP_001492126.1"
/db_xref="GI:157803577"
/db_xref="GeneID:5625950"
/translation="MLVGIGTDIVQIPRIEKILHLYPQLFAKKILTLKELKQFALLDK
TNRATFVAKHFAAKEAVSKAFGVGIGQGINFKDITILNDDLGKPIAEVSSNYTKKYSF
LNIHLSLSDDYPVCVAFAVVEGGYNVIPV"
misc_feature 438885..439259
/gene="acpS"
/locus_tag="A1E_01980"
/note="4'-phosphopantetheinyl transferase; Provisional;
Region: acpS; PRK00070"
/db_xref="CDD:178838"
gene complement(439525..440373)
/locus_tag="A1E_01985"
/db_xref="GeneID:5625951"
CDS complement(439525..440373)
/locus_tag="A1E_01985"
/note="COG0760 Parvulin-like peptidyl-prolyl isomerase"
/codon_start=1
/transl_table=11
/product="protein export protein PrsA precursor"
/protein_id="YP_001492127.1"
/db_xref="GI:157803578"
/db_xref="GeneID:5625951"
/translation="MKKLSVIFLSVSMLSSIAFADKDKVVATYKGGEVKESQIMKEFK
PQLNIQSGETIKSFDDFSLQDQEKLIKIYVNNLLLKEEVAKSHITASKEFQEKLENAK
NQLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANEIKTK
LSKGGNFTKLAEELSLDKASASNGGVIGDIILNQPGQLVPEFEKKAFALKVNEVSTPV
KTDFGWHIIKVLEKKPVPIPTKEDAKVTIDNILAAAILKQYISDLEAKADLKIMLPKA
GSKDGE"
misc_feature complement(439561..440349)
/locus_tag="A1E_01985"
/note="peptidylprolyl isomerase; Reviewed; Region: prsA;
PRK02998"
/db_xref="CDD:179522"
misc_feature complement(439681..439941)
/locus_tag="A1E_01985"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:201365"
gene 440584..443304
/locus_tag="A1E_01990"
/db_xref="GeneID:5625952"
CDS 440584..443304
/locus_tag="A1E_01990"
/note="functions in protein export; can interact with
acidic membrane phospholipids and the SecYEG protein
complex; binds to preproteins; binds to ATP and undergoes
a conformational change to promote membrane insertion of
SecA/bound preprotein; ATP hydrolysis appears to drive
release of the preprotein from SecA and deinsertion of
SecA from the membrane; additional proteins SecD/F/YajC
aid SecA recycling; exists in an equilibrium between
monomers and dimers; may possibly form higher order
oligomers; proteins in this cluster correspond SecA1;
SecA2 is not essential and seems to play a role in
secretion of a subset of proteins"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecA"
/protein_id="YP_001492128.1"
/db_xref="GI:157803579"
/db_xref="GeneID:5625952"
/translation="MLSILKKLFGTANDRTVKKLFSEITKINSLEPVIQKLSDEELKN
KTVEFKEKLKNGATLDDILYEAFAVVRESARRVCGMRHFDVQLIGGLILHQGMITEMR
TGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGM
SDEAKRAAYNADITHATNNELGFDYLRDNMKYSIQERVLRPFNFAIIDEVDSILIDEA
RTPLVISGPVNDNSELYTKIDKIVRQLKAGDFEKDEKLKTIHLTELGITHIESLLSNE
NIIKPDSGLYDFENLTLVHYINQALRAHNMFNVDVDYLVRDGQVMIIDEFTGRVMEGR
RYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIY
NLDVVAVPTHNKVTRVDLDDEIYGSKKEKYDAILKLIKDCYNRGQPILVGTISIEKSE
ELSSVLNKEKIPHKILNAKFHEQEAFIIAQAGRFRAVTIATNMAGRGTDIMLGGNPEM
LIEQLAKDHSYEAKIAEIKAQIAEEKKKVIEAGGLFVIGTERHESRRIDNQLRGRSGR
QGDPGKTQFFLSLDDDLMRIFASERISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVE
GHNYEIRKNLLRFDDVMNDQRKIIYEQRTEIIKSKDSYDFLNSTTAELAKKIVLTFMP
AGSYREDWDIENLSVELHRIFSIKFDHNLVSKNDVTEEEITKSVIQMAHDIYKSKEES
YSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQQDPLSEYKREAFNLF
EQMLDNLKELFIQTVYHFHIDLKHVQKEDVSLEHKKFQKNMQESREDPAFSKYNAGSS
LEIDLKPVVSRIDPKDRNPEDPTSWGRVSRNELCPCRSGKKYKYCHGANA"
misc_feature 440584..443043
/locus_tag="A1E_01990"
/note="preprotein translocase subunit SecA; Reviewed;
Region: PRK12904"
/db_xref="CDD:183826"
misc_feature 440854..>441225
/locus_tag="A1E_01990"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 441262..441618
/locus_tag="A1E_01990"
/note="SecA preprotein cross-linking domain; Region:
SecA_PP_bind; smart00958"
/db_xref="CDD:198026"
misc_feature 441808..442311
/locus_tag="A1E_01990"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(441913..441924,441982..441987,442054..442062)
/locus_tag="A1E_01990"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(442078..442080,442258..442260,442270..442272,
442279..442281)
/locus_tag="A1E_01990"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 443239..443292
/locus_tag="A1E_01990"
/note="SEC-C motif; Region: SEC-C; pfam02810"
/db_xref="CDD:202406"
gene 443305..443454
/locus_tag="A1E_01995"
/db_xref="GeneID:5625953"
CDS 443305..443454
/locus_tag="A1E_01995"
/note="COG0653 Preprotein translocase subunit SecA
(ATPase, RNA helicase)"
/codon_start=1
/transl_table=11
/product="nucleotidyltransferase/HEPN domain-containing
protein"
/protein_id="YP_001492129.1"
/db_xref="GI:157803580"
/db_xref="GeneID:5625953"
/translation="MKTTLPERSLKISAILNFIVQQILDIASDKITMIILYGSFTKFE
LMVNR"
gene 444232..444456
/locus_tag="A1E_02000"
/db_xref="GeneID:5625954"
CDS 444232..444456
/locus_tag="A1E_02000"
/codon_start=1
/transl_table=11
/product="ankyrin repeat-containing protein"
/protein_id="YP_001492130.1"
/db_xref="GI:157803581"
/db_xref="GeneID:5625954"
/translation="MDVVNGLNKLRAVSTTELFLASANNVIKVAKWLVEEKTGVNMYS
DMFRCTPLNSVARSGYYKVVKYLISKQELQ"
misc_feature 444274..444435
/locus_tag="A1E_02000"
/note="Ankyrin repeats (many copies); Region: Ank_4;
pfam13637"
/db_xref="CDD:205814"
misc_feature <444277..>444441
/locus_tag="A1E_02000"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cd00204"
/db_xref="CDD:29261"
gene 444609..444818
/locus_tag="A1E_02005"
/db_xref="GeneID:5626069"
CDS 444609..444818
/locus_tag="A1E_02005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492131.1"
/db_xref="GI:157803582"
/db_xref="GeneID:5626069"
/translation="MVAKNIRCISENIQDDEIYKLLLSCGTDISAKVEFRGVWFSIYE
YDGKMVSKIAEFKIALVSGESKIIT"
gene 444931..445146
/locus_tag="A1E_02010"
/db_xref="GeneID:5626070"
CDS 444931..445146
/locus_tag="A1E_02010"
/note="COG0666 FOG: Ankyrin repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492132.1"
/db_xref="GI:157803583"
/db_xref="GeneID:5626070"
/translation="MSKAKAKTASKNNPTSREQAKEYFHNGQKIKPVKLIAAQNSFLA
AEYESSGDLVVGINGQPLPWGLVKSLS"
gene 445181..445255
/locus_tag="A1E_t05704"
/db_xref="GeneID:5626071"
tRNA 445181..445255
/locus_tag="A1E_t05704"
/product="tRNA-Ala"
/db_xref="GeneID:5626071"
gene 445734..445877
/locus_tag="A1E_02015"
/db_xref="GeneID:5626072"
CDS 445734..445877
/locus_tag="A1E_02015"
/note="COG0286 Type I restriction-modification system
methyltransferase subunit"
/codon_start=1
/transl_table=11
/product="Type I restriction-modification system, M
subunit"
/protein_id="YP_001492133.1"
/db_xref="GI:157803584"
/db_xref="GeneID:5626072"
/translation="MRAAKEVEDHNYALYGQEMINTICALAQINMFLHVEGQAHIHWG
VIH"
misc_feature <445737..>445865
/locus_tag="A1E_02015"
/note="Type I restriction-modification system
methyltransferase subunit [Defense mechanisms]; Region:
HsdM; COG0286"
/db_xref="CDD:30634"
gene 445802..446044
/locus_tag="A1E_02020"
/db_xref="GeneID:5626443"
CDS 445802..446044
/locus_tag="A1E_02020"
/codon_start=1
/transl_table=11
/product="Type I restriction-modification system, M
subunit"
/protein_id="YP_001492134.1"
/db_xref="GI:157803585"
/db_xref="GeneID:5626443"
/translation="MCISTDKYVFACGRPGTYSLGGDPLNHPVLLENDTLMDFDIVVA
SPLLSLEKLGLGMKNAANDEYNRFKCGTHPKAIFLI"
gene complement(446915..447103)
/locus_tag="A1E_02025"
/db_xref="GeneID:5626444"
CDS complement(446915..447103)
/locus_tag="A1E_02025"
/note="COG0286 Type I restriction-modification system
methyltransferase subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492135.1"
/db_xref="GI:157803586"
/db_xref="GeneID:5626444"
/translation="MVKFLKLASKLALIIQSSVVLKSIKVGIFESFIIFPITSYSVPK
IETVLFVLKYFKTIIKLE"
gene 447424..448818
/locus_tag="A1E_02030"
/db_xref="GeneID:5626445"
CDS 447424..448818
/locus_tag="A1E_02030"
/note="COG0591 Na+/proline symporter"
/codon_start=1
/transl_table=11
/product="Sodium/pantothenate symporter"
/protein_id="YP_001492136.1"
/db_xref="GI:157803587"
/db_xref="GeneID:5626445"
/translation="MLKIPVNNIIVFIYLISILLIGIYYRAKDSSFKNYANVESKVRN
SKLLLIATIFASSVGGATTFGIMEKVFLGYAYYAYALILTIPIDILIAIYIVPLITKH
YGAESIGDILSTYYGTIGRFIGGVSSVIVSVGFLAAQISVSGYIFQYILDINYVSGVI
LSYSIVLIYTTIGGLQSIVSTNLVQFLAMIIAIPTITFISLNKIGFIDFINNFHTENA
NFDQSNLLSYTITAALSFSVMNLYPTFIQRALINKNPTQTTKAIYAKSAIYLFFLICI
TLNGLIAYKLYPTQPSNLVLPYLINKIIPPLMQGIVMSGLLAAVMSTADSDLNVTSIA
LVKDIINLILKVKNQQKLLLIARIINIIIGSLAIIVALKFSNVIDLVVFFTGFWGPVI
LVPLITTLFGIRVSEKIMVLSSLGGAATFLIWEYYSLYLKYFNLKGVFVGTMTSLIIF
ILGRYYSNVVVRKD"
misc_feature 447562..448782
/locus_tag="A1E_02030"
/note="Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding domain;
Region: SLC5sbd; cd10322"
/db_xref="CDD:212032"
misc_feature order(447586..447588,447595..447597,448378..448380,
448387..448392)
/locus_tag="A1E_02030"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212032"
gene complement(449353..451269)
/gene="uvrC"
/locus_tag="A1E_02035"
/db_xref="GeneID:5626446"
CDS complement(449353..451269)
/gene="uvrC"
/locus_tag="A1E_02035"
/note="The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. UvrC both incises the 5'
and 3' sides of the lesion. The N-terminal half is
responsible for the 3' incision and the C-terminal half is
responsible for the 5' incision"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit C"
/protein_id="YP_001492137.1"
/db_xref="GI:157803588"
/db_xref="GeneID:5626446"
/translation="MTSDATGSELIKSKLVDAPECAGVYQMFDVNKQVIYVGKAKNLK
KRLTNYIKLDLDNKTLRMIANTCFLEYSVTSSEVEALLLEAQLIKKFQPKFNILLKDD
KSFPFIKLRLDHDFPQLLKYRGRTRTLSDGKFFGPFASATAVNTTLTELQKIFKLRSC
TDNYFNSRNRPCLQYEIKRCYAPCISKINKKDYAELVIQVTAFLQGHTKELQENLSKK
MEELSSHMYFEEAAEIRDRIKALSYVQLKAGISDIVKDADIMAIVEKNGHYCVEVCLY
RAGQACGTIPYFPTAMGNNTKEAILKYFLLQFYQKQQLPSEIIINNEVEDKEDVIEAI
KKINNITKLNIILPISGGKAKLVQNATTNALFSLEQYLKKFAKNQEIMLEIKELFDLS
EIPERIEIYDNSHIQGKFAVGVMVVAGKSGFDKKEYRVFSLSSHDSITGFSTLTNNLD
PVVKQQYDTNGTYNTTVGDDYDMFRQVLTRRLTRLKQEPYKLPSLMIIDGGRGHVGIV
KEVMDKFKMNIPFVCMSKGPDRNAGLEQFHMVGKEVFTLDKNLPVMKYLQILRDAAHS
FAIKNHRLGRSRTIKLSSLDNIKGIGKTRKKSLLHYFGSYKAVCDATIDELVKVHGIS
KSLAEMIFRTLHQS"
misc_feature complement(449356..451248)
/gene="uvrC"
/locus_tag="A1E_02035"
/note="excinuclease ABC subunit C; Validated; Region:
uvrC; PRK00558"
/db_xref="CDD:179065"
misc_feature complement(450979..451218)
/gene="uvrC"
/locus_tag="A1E_02035"
/note="Catalytic GIY-YIG domain of nucleotide excision
repair endonucleases UvrC, Cho, and similar proteins;
Region: GIY-YIG_UvrC_Cho; cd10434"
/db_xref="CDD:198381"
misc_feature complement(order(451156..451164,451195..451203))
/gene="uvrC"
/locus_tag="A1E_02035"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198381"
misc_feature complement(order(450982..450984,451018..451020,
451120..451122,451132..451134,451153..451158,
451162..451164,451195..451197))
/gene="uvrC"
/locus_tag="A1E_02035"
/note="active site"
/db_xref="CDD:198381"
misc_feature complement(order(451018..451020,451132..451134,
451162..451164))
/gene="uvrC"
/locus_tag="A1E_02035"
/note="catalytic site [active]"
/db_xref="CDD:198381"
misc_feature complement(order(451018..451020,451132..451134,
451162..451164))
/gene="uvrC"
/locus_tag="A1E_02035"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:198381"
misc_feature complement(451018..451020)
/gene="uvrC"
/locus_tag="A1E_02035"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198381"
misc_feature complement(450544..450645)
/gene="uvrC"
/locus_tag="A1E_02035"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
misc_feature complement(449563..450117)
/gene="uvrC"
/locus_tag="A1E_02035"
/note="UvrC Helix-hairpin-helix N-terminal; Region:
UvrC_HhH_N; pfam08459"
/db_xref="CDD:203951"
gene complement(451351..451884)
/locus_tag="A1E_02040"
/db_xref="GeneID:5626447"
CDS complement(451351..451884)
/locus_tag="A1E_02040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492138.1"
/db_xref="GI:157803589"
/db_xref="GeneID:5626447"
/translation="MLKTLLISLITLICAVSYAENQTAQNHYSTNASSDESNNLLPAA
LAVHFVQPWARPTTDVQGKVSNSAMYFTLVNSRSSSYNLVNISSDIANKIELHQTITD
ESGVSKMVKVDYPFLIADNIKVDFKPGGMHIMLYDLKGPLNVGSSFKITFFFDDNTRK
TVDVKVANDNPYNTAGN"
misc_feature complement(451354..451773)
/locus_tag="A1E_02040"
/note="Copper(I)-binding protein [Inorganic ion transport
and metabolism]; Region: COG2847"
/db_xref="CDD:32675"
gene complement(452001..452111)
/locus_tag="A1E_02045"
/db_xref="GeneID:5626301"
CDS complement(452001..452111)
/locus_tag="A1E_02045"
/note="COG2847 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492139.1"
/db_xref="GI:157803590"
/db_xref="GeneID:5626301"
/translation="MHQAVGWMLREAGKKDKKHINRSFRSLYSTNAKNHS"
misc_feature complement(452058..>452111)
/locus_tag="A1E_02045"
/note="A new structural DNA glycosylase; Region:
AlkD_like; cl11434"
/db_xref="CDD:209319"
gene complement(452588..453118)
/locus_tag="A1E_02050"
/db_xref="GeneID:5626302"
CDS complement(452588..453118)
/locus_tag="A1E_02050"
/note="COG0350 Methylated DNA-protein cysteine
methyltransferase"
/codon_start=1
/transl_table=11
/product="methylated-DNA--protein-cysteine
methyltransferase"
/protein_id="YP_001492140.1"
/db_xref="GI:157803591"
/db_xref="GeneID:5626302"
/translation="MDIKINNVLKSAWLDTPIGSMLTISDEERLYLLDFAESKGLEYK
IKRLKIKTKSAITEDRTKPILSIKEELKSYFTGTLKKFDTPIYLLGSEFQKLVWQELM
NVPYGETRSYFDQAKIIGRERSYRAVANANGANKCAIIIPCHRIINNNGELGCYSSGL
DRKKWLIEHERTFTTN"
misc_feature complement(452606..453094)
/locus_tag="A1E_02050"
/note="Methylated DNA-protein cysteine methyltransferase
[DNA replication, recombination, and repair]; Region: Ada;
COG0350"
/db_xref="CDD:30699"
misc_feature complement(452606..452842)
/locus_tag="A1E_02050"
/note="The DNA repair protein O6-alkylguanine-DNA
alkyltransferase (ATase; also known as AGT, AGAT and MGMT)
reverses O6-alkylation DNA damage by transferring O6-alkyl
adducts to an active site cysteine irreversibly, without
inducing DNA strand breaks. ATases...; Region: ATase;
cd06445"
/db_xref="CDD:119438"
misc_feature complement(order(452654..452656,452675..452677,
452690..452692,452714..452716,452720..452725,
452732..452734,452738..452743,452747..452749,
452756..452758,452780..452785,452837..452842))
/locus_tag="A1E_02050"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:119438"
misc_feature complement(order(452609..452611,452681..452683,
452687..452692,452783..452785))
/locus_tag="A1E_02050"
/note="active site"
/db_xref="CDD:119438"
gene complement(454363..454545)
/locus_tag="A1E_02055"
/db_xref="GeneID:5626303"
CDS complement(454363..454545)
/locus_tag="A1E_02055"
/note="COG0610 Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases"
/codon_start=1
/transl_table=11
/product="Type I site-specific restriction-modification
system, R (restriction) subunit"
/protein_id="YP_001492141.1"
/db_xref="GI:157803592"
/db_xref="GeneID:5626303"
/translation="MRTILPNAYIAFTGTPILKDQKHTFRNFGKSIHKYTIKAILKDN
MIVPLFYEGRIIQQYL"
misc_feature complement(<454366..>454545)
/locus_tag="A1E_02055"
/note="type I site-specific deoxyribonuclease, HsdR
family; Region: hsdR; TIGR00348"
/db_xref="CDD:188043"
gene 456406..456855
/locus_tag="A1E_02060"
/db_xref="GeneID:5626304"
CDS 456406..456855
/locus_tag="A1E_02060"
/note="MraZ; UPF0040; crystal structure shows similarity
to AbrB"
/codon_start=1
/transl_table=11
/product="cell division protein MraZ"
/protein_id="YP_001492142.1"
/db_xref="GI:157803593"
/db_xref="GeneID:5626304"
/translation="MNVFLSKYVNGVDKKSRVSVPANYRAVLGQELFNGVIAYPSIRN
KCIEACGISHIEKLRQMIETLDPYSEERDAFETIIFGEALQLSFDSEGRVMLPQSLMQ
HAGIEEQACFVGKGVIFEIWQPQNFEKYLNSAQKIAYEKRLTLRNAN"
misc_feature 456412..456849
/locus_tag="A1E_02060"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2001"
/db_xref="CDD:32184"
misc_feature 456640..456846
/locus_tag="A1E_02060"
/note="MraZ protein; Region: MraZ; pfam02381"
/db_xref="CDD:111290"
gene 456855..457781
/gene="mraW"
/locus_tag="A1E_02065"
/db_xref="GeneID:5626305"
CDS 456855..457781
/gene="mraW"
/locus_tag="A1E_02065"
/note="COG0275 Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis"
/codon_start=1
/transl_table=11
/product="S-adenosyl-methyltransferase MraW"
/protein_id="YP_001492143.1"
/db_xref="GI:157803594"
/db_xref="GeneID:5626305"
/translation="MQQSHIPVMLNEMLANLAPQDGKSYLDCTFGAGGYSKAILESCN
CYVTALDRDPNVIKRAERIKQNYSTRFDFIETNFADSFAKLKEKKFDGIVLDLGVSSM
QLDIADRGFSFLHDSPLDMRMSGQGLSAEEFINTVEEKELADIIYKYGDESFSRRIAK
RIVEYRKTARINSTGKLAEIVRNSIGFRKGKIDPATKTFQAIRIYINDELRELERFLA
NVQNILNKDGRLVIVSFHSLEDRIVKHFFKENSEKPVARSKYSKDNPVIDPNKWLKII
TNKAEAPSDKEVELNVRARSAKLRAAKAIYEY"
misc_feature 456855..457727
/gene="mraW"
/locus_tag="A1E_02065"
/note="Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane]; Region:
COG0275"
/db_xref="CDD:30623"
misc_feature 456930..>457178
/gene="mraW"
/locus_tag="A1E_02065"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(456936..456956,457005..457010,457080..457088,
457140..457142)
/gene="mraW"
/locus_tag="A1E_02065"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 457784..458173
/locus_tag="A1E_02070"
/db_xref="GeneID:5626013"
CDS 457784..458173
/locus_tag="A1E_02070"
/note="COG5462 Predicted secreted (periplasmic) protein"
/codon_start=1
/transl_table=11
/product="cell division protein FtsL"
/protein_id="YP_001492144.1"
/db_xref="GI:157803595"
/db_xref="GeneID:5626013"
/translation="MSIRKFHYLTLLITIIAVCSLFSIKERVSTLDYQLNSVIKQINS
ENNNIHILKAEQAYLLSPGRLKKLVAAYLTLETVKSYQMIKDPLLPTTNQNIKFAYNI
SIPKDSKWRYRRITNNKYIQTVSSKVK"
misc_feature 457787..458170
/locus_tag="A1E_02070"
/note="Predicted secreted (periplasmic) protein [Function
unknown]; Region: COG5462"
/db_xref="CDD:35021"
gene 458264..459949
/locus_tag="A1E_02075"
/db_xref="GeneID:5626014"
CDS 458264..459949
/locus_tag="A1E_02075"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein"
/protein_id="YP_001492145.1"
/db_xref="GI:157803596"
/db_xref="GeneID:5626014"
/translation="MKHILEKWKPAIKSLIIWNVCSKNIKIRLLIVICGFSFLFCTLS
YRLIIVATNVYDKNLNAVKKNNQFRKEIVDRNGNLLAVNLPSASLFANPQIVLDPETS
VKKLAEILPDINKAKLLAELKSNKSFIWVKRDLLPSQQEKITSLGLLGFDFEEEQKRI
YIFSNLLSHVIGYVGRDLVGLSGLELAYDKYLTNSDHALNEPGNWKEPLKLSIDIRLQ
SILSEEIDKTLKQFNAIGAVGIIADPNNGEILALVNKPDFDPHHPNLARPEELFNIAS
LGLYEMGSVFKALTMAVGFDTGAINMNDAYDISYMKVGGFQLKDYTPRQGWHSVPEIF
LYSSNIGTSQIMLEIGKSNFKKYLKKLGLLDQLQIELPERGTPLFPSEKRWNELTSVT
MSYGYGISISPLHFVRAMLPVVNGGTLYDLTLLKRKDEKVIGRRVFSEHTSTQMKKLF
RSVVKEGNGKRAEVKGYLVGGKTGTAEKLSQGAGGKKKYLKNSRASSFLGVLPVSNPQ
YVIFIRFDEPKPTKESFGFATASWTAAPTAGRVFERMISLYGLEPIEHNEEES"
misc_feature 458318..459928
/locus_tag="A1E_02075"
/note="Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane];
Region: FtsI; COG0768"
/db_xref="CDD:31111"
misc_feature 458468..458839
/locus_tag="A1E_02075"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:202738"
misc_feature 458981..459823
/locus_tag="A1E_02075"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene 460379..460900
/locus_tag="A1E_02080"
/db_xref="GeneID:5626015"
CDS 460379..460900
/locus_tag="A1E_02080"
/note="COG0768 Cell division protein
FtsI/penicillin-binding protein 2"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492146.1"
/db_xref="GI:157803597"
/db_xref="GeneID:5626015"
/translation="MLKIKQEIYKNSLQIILKLLFALLCLLIILFPLVSYKINIQSRI
FPAIEIIFIYYFMSLYSLNVFRIFLLGLLIDQISGIPIGTNSLVFLLAYVIYKVSSKY
FVTKNYFIHFIIFCVYCLFILNFKYLLVIIKRLEADGYLILFLQFCTTIFSYNLVYLI
LDSPMNYFKKYAK"
gene 460890..462671
/locus_tag="A1E_02085"
/db_xref="GeneID:5626016"
CDS 460890..462671
/locus_tag="A1E_02085"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein"
/protein_id="YP_001492147.1"
/db_xref="GI:157803598"
/db_xref="GeneID:5626016"
/translation="MLNKKILHGELISRRAFIIGVGKLGFLSLLGIRMFYLQLIKSEE
YKTLSDKNRINFVVLPPSRGRIYDLDGNILATNKPCYQLVIDRSINNNYRDELEIISN
ILNLSPEKFNYIKQKIEKSSRHVPLVIFDQLDWQQVSVIEEQKHKLASIFIDVGYLRF
YPFSSVTSHLIGYLGQINEQEKQELNIYSVSNFNIGKSGIEKYYDNKLRGEFGYKKVE
VNAYGKQVREIAGTPTKSGEDMHLNIDASLQQKIRQYLNPKGSSAIVMDTRTGNVLIC
VSTPGFESNNFSKLSENYWQSLTGDPYKPLINKVIQNSYPPGSVFKIITVLAALEVGI
NPNKTVFCDGSSVLNTNSFRCWNHSGHGTLDMMSALKYSCNIYMYELARIIGPDKILA
VAREFGFGSKTGIDLAHENMGFVPSKEWKKRKLKLPWSIGDSFNLAIGQGFLGVTPMQ
LARFITAIASNGKLYTPRVLKNDPEFYNVNIKPENIKIIQESLYNTVNVVGGTAYYNR
ILGKNRQLAGKTGTSQVQGKLNAKDDLSRDSIAWERRNHALFLGFSPYHDPRYSVTVF
IDHGGGGSKAAAPIARKIMSDVLDKYL"
misc_feature 460929..462668
/locus_tag="A1E_02085"
/note="penicillin-binding protein 2; Region: pbp2_mrdA;
TIGR03423"
/db_xref="CDD:200273"
misc_feature 461064..461576
/locus_tag="A1E_02085"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:202738"
misc_feature 461673..462644
/locus_tag="A1E_02085"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene 462710..462850
/locus_tag="A1E_02090"
/db_xref="GeneID:5626017"
CDS 462710..462850
/locus_tag="A1E_02090"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492148.1"
/db_xref="GI:157803599"
/db_xref="GeneID:5626017"
/translation="MIEELLKFQYGYNDEKVAAIVERVIDYDLLYCIKYFINNGGIVI
EN"
gene 463165..463344
/locus_tag="A1E_02095"
/db_xref="GeneID:5626331"
CDS 463165..463344
/locus_tag="A1E_02095"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492149.1"
/db_xref="GI:157803600"
/db_xref="GeneID:5626331"
/translation="MPDTDLLDLCNVLKMRSFLLSIKELDNLYLYPTGQDSDFINVYK
ISSPEVQEMWDVRVS"
gene 463781..464758
/locus_tag="A1E_02100"
/db_xref="GeneID:5626332"
CDS 463781..464758
/locus_tag="A1E_02100"
/note="COG0768 Cell division protein
FtsI/penicillin-binding protein 2"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492150.1"
/db_xref="GI:157803601"
/db_xref="GeneID:5626332"
/translation="MSKKKQDDQIIKELEARLAKLKGTPPTLEELEERFAKLQDRPYV
PTKKSGNKVDDLIEQIRSEVKLEQKSRNLSNQKDQEICDRLDKLREDIPIMQHKTSTA
LSFNDTKSIITDTIDAQADIASLYASRSTELEEKKALLHLANNLTEASDIIRDKSPIS
KEYETKILDVIASGLNTIYEGIKKIVSPTVNILKEIGSSFVNSIQSLHQKSSKQQIKE
SKIKLKKLYKTYIYLKGVKPKIKEDFLKKHYERIDQLQTPQEIFIETAKITKSIKIAG
KQKINNLKQQQIINRMKEQSPTAFINNNLFVPSNTLTTKVRSLKKSNQR"
gene complement(465108..466859)
/locus_tag="A1E_02105"
/db_xref="GeneID:5626333"
CDS complement(465108..466859)
/locus_tag="A1E_02105"
/note="COG1357 Uncharacterized low-complexity proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492151.1"
/db_xref="GI:157803602"
/db_xref="GeneID:5626333"
/translation="MPILKVISIITIYLLLSSCSESTRDAHGLLTDSQSTVIQHYIVS
QNSKNLKVNLKEKFGSNLKGVKLIGVQLINEDLSGIDLTSCEILRTDFAGSNLEKAIL
TNAIIQESNFADSVIKNISGYNSDFRGSIFNNITLQNTNLVQSNFSDTAFNKTTIKHV
NFEKSKFSHVLWNNNTIDGVNFQKANLKNNSFKNTNITNSIFYGTDLAKSVINNTNFT
NNYFESSDLSQTRLTAVIIKDSNFTQSIFNEVSFNNVQSNNSYFSYASFQGSTLQNIS
LTKCDLQNSTISGAVLNQFKIDNSILNNMSLNDNKFNNLSIKNSNANFVRINKTKGSN
ITLDNISIANIIFSNNDFKQFIAINTDLTGSEIINSNITNGQFNNVNFSKTLIQNINF
SDVKINLGNLNQVALINSNLINTAVINSAISNSQINNINYQAYSSFINTNVSNNIILN
SDNSSKNLPNNIIINSVKDLQKITNLANMNLTNFDLSNLIFDRVDFSNSIFKNANLTN
TVIKNSSLQNVDFSATTISKTDFSNSILTDSIFKSAKIDQANFNNSDLTNVDFSDAAI
KNTLFDKAKTGRMKGVE"
misc_feature complement(466284..466517)
/locus_tag="A1E_02105"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(466095..466307)
/locus_tag="A1E_02105"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(465948..466157)
/locus_tag="A1E_02105"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(465321..465440)
/locus_tag="A1E_02105"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(465177..465407)
/locus_tag="A1E_02105"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
gene complement(466846..468273)
/locus_tag="A1E_02110"
/db_xref="GeneID:5626334"
CDS complement(466846..468273)
/locus_tag="A1E_02110"
/note="COG2204 Response regulator containing CheY-like
receiver, AAA-type ATPase, and DNA-binding domains"
/codon_start=1
/transl_table=11
/product="nitrogen assimilation regulatory protein NtrX"
/protein_id="YP_001492152.1"
/db_xref="GI:157803603"
/db_xref="GeneID:5626334"
/translation="MSSIDVLIVDDEEDIRNIIAAILKDEGFNSKVAANSTQALKILA
EKPVSAVILDIWLQGSEIDGLGILEIIKKRYPLMPVIIISGHGTIETAVNAIKMGAYD
YIEKPFNNDKLVILLKRACEVTKLKRENIDLKSKVIDKTELVGGCSVTLKYKMEIEKA
ASSSSRIMIQGKVGSGKELAARLIHKQSKRVNNPFIIFSPTCMTTEKIDQELFGESEK
QENNNKRPTILEFANNGTLYIDEVSNIPIPIQVKLLKFLKNQTITKPCGDSIKVDIKI
ITGTSKNIQDEVNNGKFLEELYYRLNVFSLKVPSLYERKEDIPLLIKYFVKQLSKFSG
LKERPFADDTIAALQSYEWPGNIRQLRNVVEWTLIMNPLTTGNNEIIKPYMIPAEILA
NSANLTKLEDSVDMLSMPLREAREVFERQYLSAQMSRFNNNISKTSSFVGMERSALHR
KLKLLSLHIPPANKINEEEYEDANT"
misc_feature complement(466882..468228)
/locus_tag="A1E_02110"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:32386"
misc_feature complement(467914..468228)
/locus_tag="A1E_02110"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(467953..467958,467965..467967,
468022..468024,468082..468084,468112..468114))
/locus_tag="A1E_02110"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(468112..468114)
/locus_tag="A1E_02110"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(468082..468090,468094..468096,
468103..468105))
/locus_tag="A1E_02110"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(467950..467958)
/locus_tag="A1E_02110"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(467368..467775)
/locus_tag="A1E_02110"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(467740..467763)
/locus_tag="A1E_02110"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(467431..467433,467554..467556,
467737..467760))
/locus_tag="A1E_02110"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(467551..467568)
/locus_tag="A1E_02110"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(467374..467376)
/locus_tag="A1E_02110"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(466915..467031)
/locus_tag="A1E_02110"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene 468487..468753
/locus_tag="A1E_02115"
/db_xref="GeneID:5626335"
CDS 468487..468753
/locus_tag="A1E_02115"
/note="subunit F of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
F"
/protein_id="YP_001492153.1"
/db_xref="GI:157803604"
/db_xref="GeneID:5626335"
/translation="MLNIFLIIISLFICLITYLFIKKTDIFTKLLVLNSFTTIVSLFI
CCLSLYSGNSSYLDIAIIYFLLSFIATNGYLKYFINESNENKTD"
misc_feature <468535..468735
/locus_tag="A1E_02115"
/note="putative monovalent cation/H+ antiporter subunit F;
Reviewed; Region: PRK12612"
/db_xref="CDD:183623"
gene 468896..470023
/locus_tag="A1E_02120"
/db_xref="GeneID:5626336"
CDS 468896..470023
/locus_tag="A1E_02120"
/note="Oxygenase that introduces the hydroxyl group at
carbon four of 2-octaprenyl-6-methoxyphenol resulting in
the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone"
/codon_start=1
/transl_table=11
/product="2-octaprenyl-6-methoxyphenyl hydroxylase"
/protein_id="YP_001492154.1"
/db_xref="GI:157803605"
/db_xref="GeneID:5626336"
/translation="MTNIVILGCGLSGMLTALSFAKKGIETTIFESKSVKSPEFFKDI
RTTALTPHAKNFLSSIDIWEELEECTVGMQDVYVVDNKASEILDLRNDNNNLLGYVVK
NSDFKKILLSKITNHPLVTLIDNYKYQEVISHHNYSVIKFDNEQIKCNLLIICDGANS
KARSHYFANKIEKPYQTALTFNIKHEKPHENSAMEHFLPLGPFALLPLKDQYASSVIW
STSSDQAALIMNLPVEEVRFLTQRNAGNALGKITIDSEMSSFPLKARMVNRYFHNKIV
LIADTAHIIHPLAGQGLNQGIKDIETLSMVISNNNGSLERYQKLRQDDNFIMYKLTDE
LNNIFSHYSKNLRFIRQIGFKAINNFKPIKNLIMNYAMGER"
misc_feature 468896..470020
/locus_tag="A1E_02120"
/note="2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated; Region: PRK06617"
/db_xref="CDD:168629"
misc_feature 468905..470014
/locus_tag="A1E_02120"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 470237..470419
/locus_tag="A1E_02125"
/db_xref="GeneID:5626105"
CDS 470237..470419
/locus_tag="A1E_02125"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492155.1"
/db_xref="GI:157803606"
/db_xref="GeneID:5626105"
/translation="MLKKVMLLCLNINENSNISQPQTQQSGQKKNRVLTETKAMCGLR
AVTAAASAVLVSAKIV"
gene 470412..470531
/locus_tag="A1E_02130"
/db_xref="GeneID:5626106"
CDS 470412..470531
/locus_tag="A1E_02130"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492156.1"
/db_xref="GI:157803607"
/db_xref="GeneID:5626106"
/translation="MFSAAAKVCANFDIVCVADDLKSESDIAKGCDKIKTLPG"
gene 470997..471071
/locus_tag="A1E_02135"
/db_xref="GeneID:5626107"
CDS 470997..471071
/locus_tag="A1E_02135"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492157.1"
/db_xref="GI:157803608"
/db_xref="GeneID:5626107"
/translation="MVIAVAAAKGLVNTGSTADIDIIL"
gene 471696..471911
/locus_tag="A1E_02140"
/db_xref="GeneID:5626108"
CDS 471696..471911
/locus_tag="A1E_02140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492158.1"
/db_xref="GI:157803609"
/db_xref="GeneID:5626108"
/translation="MYYFSHNFILLKYTFAIPLNSALNVKGFIFPRGHMSSSIVFYGW
FFANIRHYLIKNNNSSDFNWYWIFVDL"
gene 471901..472050
/locus_tag="A1E_02145"
/db_xref="GeneID:5626109"
CDS 471901..472050
/locus_tag="A1E_02145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492159.1"
/db_xref="GI:157803610"
/db_xref="GeneID:5626109"
/translation="MIYKGYHYLFDIIASITIGIMVIAFVYSVTKEDIVHKYPFMLGA
FVWAF"
gene 472038..472241
/locus_tag="A1E_02150"
/db_xref="GeneID:5626110"
CDS 472038..472241
/locus_tag="A1E_02150"
/note="COG0654 2-polyprenyl-6-methoxyphenol hydroxylase
and related FAD-dependent oxidoreductases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492160.1"
/db_xref="GI:157803611"
/db_xref="GeneID:5626110"
/translation="MGVLTVPMVAYLKIIDLNCLVSVWTVFWGLLGLTISWPVILSIF
GTLSIKIKLFLQLSYNCRFNSVA"
gene 472492..473823
/locus_tag="A1E_02155"
/db_xref="GeneID:5626018"
CDS 472492..473823
/locus_tag="A1E_02155"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="proline/betaine transporter"
/protein_id="YP_001492161.1"
/db_xref="GI:157803612"
/db_xref="GeneID:5626018"
/translation="MLGYEKAQTSLNREQKETIRLLSIGTFLEYFDLMIYVHMAVLLN
ELLFPKADTQTAAIYSAAAFCSTFVFRTFVALLFGWIGDKYGRKSTVIITTLFMACFC
AFMAGLPTYVQIGVTATWIVTICRIIQGMSSLCEIIGAELYLTETINPPKQYPVVSLM
FSCAVLGGVAALGLESIIVHYGFSWRITFFIGTFIAITGSYARTHLRETRDFIDAKQQ
VKNIFNKASINIKILENNPIWKEKVHWKTSLYYFLIHCTWPVTFYITYIYCSNILKSS
FNYTSEEIITHNFIVSLMQFFGSLIFRAYLSGIINPLKILKGFLAIFSLFILIFPYLL
NNLHTPRELLIIQSIMVIIGLGDAPAVPIFFKHFPIFKRFTYSSFLYALSRALIYVVT
SFGIIYLVSYFGHWGILVISIPLSISYGFGIQHFEKLEKNRENYLKKKQLA"
misc_feature 472546..>473049
/locus_tag="A1E_02155"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 472564..473709
/locus_tag="A1E_02155"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature order(472588..472590,472597..472599,472609..472614,
472618..472623,472672..472674,472681..472683,
472693..472695,472702..472704,472714..472719,
472723..472728,472888..472893,472900..472905,
472912..472917,472924..472926,472960..472965,
472972..472977,472993..472995)
/locus_tag="A1E_02155"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(473820..474467)
/locus_tag="A1E_02160"
/db_xref="GeneID:5626019"
CDS complement(473820..474467)
/locus_tag="A1E_02160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492162.1"
/db_xref="GI:157803613"
/db_xref="GeneID:5626019"
/translation="MTFMEDISSWQEKFEVCVYAKKLLDKLKYLNAKVKNPVDIEEVK
KGIYYARKYHGSQMRQSGEPYYSHPVEVAIMLAEFVTDEAPKLFTTNMINAALLHDTI
EDTELTEEMITEIFEIEVARHVEGLTRIKSYGKISVEESLNLLVKQKRYDTALIKFFD
RIHNVQTLGVKSPEKIRKIIEETLKVFLILSMYLGISQVKNKLIELCLNIAYSDS"
misc_feature complement(<473826..474377)
/locus_tag="A1E_02160"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:30665"
misc_feature complement(473877..474329)
/locus_tag="A1E_02160"
/note="HD domain; Region: HD_4; pfam13328"
/db_xref="CDD:205508"
misc_feature complement(474576..474647)
/note="similar to hypothetical protein"
gene complement(475101..475177)
/locus_tag="A1E_t05706"
/db_xref="GeneID:5626021"
tRNA complement(475101..475177)
/locus_tag="A1E_t05706"
/product="tRNA-Arg"
/db_xref="GeneID:5626021"
gene complement(476156..476395)
/locus_tag="A1E_02170"
/db_xref="GeneID:5626022"
CDS complement(476156..476395)
/locus_tag="A1E_02170"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492164.1"
/db_xref="GI:157803615"
/db_xref="GeneID:5626022"
/translation="MLKDQLAENIIGLEIKTFDKPLITLKTEYDTPYKVITLDKIKLE
NPANVKIFNEAINNKINEFNNRNFISFTYAVQLNS"
gene complement(476698..476994)
/locus_tag="A1E_02175"
/db_xref="GeneID:5626083"
CDS complement(476698..476994)
/locus_tag="A1E_02175"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492165.1"
/db_xref="GI:157803616"
/db_xref="GeneID:5626083"
/translation="MSKDNEPANSLTTEKQIKEIISGARNDIRDIEGYVLGQLKNQII
ADKEPIDINSKDFKEIFEADHNETSTIEINEKQEVIKNNIINVRATILAINERI"
gene 477733..477912
/locus_tag="A1E_02180"
/db_xref="GeneID:5626084"
CDS 477733..477912
/locus_tag="A1E_02180"
/note="COG0317 Guanosine polyphosphate
pyrophosphohydrolases/synthetases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492166.1"
/db_xref="GI:157803617"
/db_xref="GeneID:5626084"
/translation="MGDKLDLYEQDIENNFKKQQKFNNQSEITLLHKSAQIYMSKMSI
LNVTNRKTKKEFLKG"
gene 477924..479159
/locus_tag="A1E_02185"
/db_xref="GeneID:5626085"
CDS 477924..479159
/locus_tag="A1E_02185"
/note="catalyzes the formation of tyrosyl-tRNA(Tyr) from
tyrosine and tRNA(Tyr)"
/codon_start=1
/transl_table=11
/product="tyrosyl-tRNA synthetase"
/protein_id="YP_001492167.1"
/db_xref="GI:157803618"
/db_xref="GeneID:5626085"
/translation="MTFIKEFRNKGYFHQCTNLDRLTSITKETKIAAYIGFDCTATSL
HIGSLMQIMILRLLQQHGHKPIVIIGGGTSKIGDPTWKDEARKILSKEEIAKNAEGIK
KSLSKFIKFGEESSDAIMLDNSEWLDSLNYLDFLRDFGSYFSVNRMLTMDSVRLRLER
EQHLSFLEFNYMLLQAYDFYYLSKYYNCSLQLGGSDQWGNIVIGVDLIRKISSKEVFG
MTTPLLTTSSGAKMGKTAAGAVWLNEDLLSPYDYYQYWRNCEDADVIRFAKLFSELNT
KEFTKFENLVAEDINAAKKQLAYELTKLCHSEQAAKSALETAVKIFEQGEIDENLHTV
VLELEILQAGINAYELFHEAGLATSKSEARKLIRGKGAKINDKLIEDENMIINTNFLL
DKSVIKLSAGKKRHILVRI"
misc_feature 477924..479156
/locus_tag="A1E_02185"
/note="tyrosyl-tRNA synthetase; Validated; Region:
PRK05912"
/db_xref="CDD:180311"
misc_feature 478014..478835
/locus_tag="A1E_02185"
/note="catalytic core domain of tyrosinyl-tRNA synthetase;
Region: TyrRS_core; cd00805"
/db_xref="CDD:173902"
misc_feature order(478023..478025,478029..478037,478056..478058,
478062..478067,478434..478436,478446..478448,
478455..478457,478494..478496,478500..478505,
478512..478514,478590..478595,478614..478625)
/locus_tag="A1E_02185"
/note="active site"
/db_xref="CDD:173902"
misc_feature 478056..478067
/locus_tag="A1E_02185"
/note="HIGH motif; other site"
/db_xref="CDD:173902"
misc_feature order(478137..478139,478146..478151,478317..478322,
478326..478334,478341..478346,478350..478361,
478365..478370,478422..478424,478428..478433,
478440..478445)
/locus_tag="A1E_02185"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173902"
misc_feature 478614..478628
/locus_tag="A1E_02185"
/note="KMSKS motif; other site"
/db_xref="CDD:173902"
misc_feature 478971..479150
/locus_tag="A1E_02185"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(478995..479000,479004..479009,479013..479018,
479025..479030,479034..479036,479055..479078,
479082..479084)
/locus_tag="A1E_02185"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 479982..480158
/locus_tag="A1E_02190"
/db_xref="GeneID:5626086"
CDS 479982..480158
/locus_tag="A1E_02190"
/note="COG0162 Tyrosyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492168.1"
/db_xref="GI:157803619"
/db_xref="GeneID:5626086"
/translation="MQFVSTCTQDKPLESHYLKGVKYLVILELLKGRLNLGLPTNCYF
WRDKTGYEIDCISE"
gene 480266..481120
/locus_tag="A1E_02195"
/db_xref="GeneID:5626087"
CDS 480266..481120
/locus_tag="A1E_02195"
/EC_number="6.1.1.1"
/note="COG1189 Predicted rRNA methylase"
/codon_start=1
/transl_table=11
/product="tyrosyl-tRNA synthetase"
/protein_id="YP_001492169.1"
/db_xref="GI:157803620"
/db_xref="GeneID:5626087"
/translation="MYNAEQNGSIFKYTNLILLGQINQVNIKMIKAMKIRLDEYLLQK
GFVTDITIAQSLIIQGKVHNKYEQLIKPGIQVNINDTNIKVKLPKHNYVSRGALKLIA
ALDYFKITTENLVCIDIGSSTGGFTQVLLERKAKLIFAVDVGYGELHPKLRNNLQIKV
LEKTNARYLTDKQITMKPDLIVCDASFISLTTILPTSLNLAKEDCMLIALIKPQFEVK
KHEVEKGGIIKNSILHRKVCNKIKDWLVKEHNFKIFGIIDSPILGAKGNKEFLICGKR
KWLFSYNL"
misc_feature 480362..481096
/locus_tag="A1E_02195"
/note="Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis]; Region: COG1189"
/db_xref="CDD:31382"
misc_feature 480368..480541
/locus_tag="A1E_02195"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(480371..480373,480407..480412,480416..480421,
480425..480430,480437..480442,480446..480448,
480467..480490,480494..480496)
/locus_tag="A1E_02195"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 480614..>480835
/locus_tag="A1E_02195"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(480620..480640,480689..480691,480755..480763,
480815..480817)
/locus_tag="A1E_02195"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 481400..481777
/locus_tag="A1E_02200"
/db_xref="GeneID:5626088"
CDS 481400..481777
/locus_tag="A1E_02200"
/note="in Streptococcus pneumoniae this gene was found to
be essential; structure determination of the Streptococcus
protein shows that it is similar to a number of other
proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492170.1"
/db_xref="GI:157803621"
/db_xref="GeneID:5626088"
/translation="MQTIEQQITNVIEESLIDMGFELVLVKFKGVNSKVVEILIDSLN
SEKVSVEDCTKVSRTIPAILDVENLIEDASSLEVASSGLERPLVKFENYNRFLGREVK
ITLKELLNDKTSYQGKIIKAENK"
misc_feature 481400..>481771
/locus_tag="A1E_02200"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:178857"
misc_feature 481415..>481732
/locus_tag="A1E_02200"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
misc_feature 481643..>481771
/locus_tag="A1E_02200"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
gene 481900..483411
/gene="nusA"
/locus_tag="A1E_02205"
/db_xref="GeneID:5626395"
CDS 481900..483411
/gene="nusA"
/locus_tag="A1E_02205"
/note="modifies transcription through interactions with
RNA polymerase affecting elongation, readthrough,
termination, and antitermination"
/codon_start=1
/transl_table=11
/product="transcription elongation factor NusA"
/protein_id="YP_001492171.1"
/db_xref="GI:157803622"
/db_xref="GeneID:5626395"
/translation="MSNIGNVEILQIINSVAREKGISKEILISTVEQAVQVAGRKKYG
NEYNIKAQINRKTGEINLLRILKIVENVEDYLTQISFEEALIKNPAAKIGDEIYEYLP
PIDHARVSAQAAKQVITQRVIEAERAKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSR
AEAIIKKDQLIKGENFKPNDRIKAYVQDVRQETKGPQIFLSRVDNQMLVNLFKLEVPE
IFEDIIQIKSVARDPGSKAKIAVFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDI
VLWSNDLAQFIVNALAPLAAAAITKILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLA
SKLTGWNIDIMTEEQESKRRNEEFLTSTGLFMEALDVEEVIGQLLSVTGFNSVEQIAN
SEISTLTRIEGFEEELAVEIKNRAINYVNLKNEKIIKKLEELGVEQEVIDILELPLEL
ILKFAEYGIKTIEDLGEMSVNEFKNLAPSANITDENIKLLIKTARQHSELKSN"
misc_feature 481915..483342
/gene="nusA"
/locus_tag="A1E_02205"
/note="transcription elongation factor NusA; Validated;
Region: nusA; PRK09202"
/db_xref="CDD:181696"
misc_feature 481921..482286
/gene="nusA"
/locus_tag="A1E_02205"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature 482305..482505
/gene="nusA"
/locus_tag="A1E_02205"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:88421"
misc_feature order(482338..482340,482362..482364,482389..482391,
482395..482397)
/gene="nusA"
/locus_tag="A1E_02205"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88421"
misc_feature order(482344..482346,482356..482358,482383..482385,
482389..482391,482488..482490)
/gene="nusA"
/locus_tag="A1E_02205"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:88421"
misc_feature 482596..482766
/gene="nusA"
/locus_tag="A1E_02205"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature 482746..482934
/gene="nusA"
/locus_tag="A1E_02205"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature 482872..482883
/gene="nusA"
/locus_tag="A1E_02205"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
misc_feature 483010..483159
/gene="nusA"
/locus_tag="A1E_02205"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
gene 483625..486126
/gene="infB"
/locus_tag="A1E_02210"
/db_xref="GeneID:5626396"
CDS 483625..486126
/gene="infB"
/locus_tag="A1E_02210"
/note="Protects formylmethionyl-tRNA from spontaneous
hydrolysis and promotes its binding to the 30S ribosomal
subunits during initiation of protein synthesis. Also
involved in the hydrolysis of GTP during the formation of
the 70S ribosomal complex"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_001492172.1"
/db_xref="GI:157803623"
/db_xref="GeneID:5626396"
/translation="MTDNQEIKPKKLTLGNSKLSLNKSFDSLTGAQSFVNAKSKTLVE
VRKSSIGSTTTISLNKERNNLDQTVIDANKEEFNRRLSILKKAAEQSKLNDPSQISTL
SKLASINQSTNLKIETLETDKEVAQKRQNITENKVEVSAKIVQGDEDILSQIYKKKAE
TFVKSPLVGMRTRYSIESEKESDKTAESKVVVQKIKLEEPKKFKKVDLFNMLSDDESG
SGRTRTRSLASIKRAREKEKRKLVLQAPEKVYREVTIPEVIGVGDLANAMSERVADVI
KELMNLGILANASQVIDADTAELVATNLGHKVKRVQESDVENVLISDDKVEDLRTRAP
VVTVMGHVDHGKTSLLDALKSTDIAAGEIGGITQHIGAYRVTLADGRAITFIDTPGHE
AFSEMRSRGTKVTDIAIIVVAADDGIKTQTVEAINHAKVAGVPIIIAINKIDKPNIDI
ERVKNELYIHEIIGEEAGGDVMVIPISALKKINLDKLEEAILLIAEMQDLKASPFGSA
AGVVIESKIEKGRGTLTTILVQRGTLKNGDIIIAGTSYGKVKKMTNDKGLEIAEATPS
VPVEIQGLNEVPFAGVKFNVVQNEKQAKDIAEYRMRLAKEKKISIAPRSSLEDLFLKA
SGNSKIKELPLIIKGDVHGSVEAILGSLLKLPSDEIKLRILHSGVGPITESDISLAHA
SSAIIVGFNVRAGVNALTAAEKAKIDIRYYSIIYNLIDDVKAIMSGMLDPIVREQYIG
SVEIRRVFNVTKVGKIAGSYVTKGIIKKGADVRLLRDNIVIHEGKLKTLKRFKDEVKE
VREGYECGIAFENYEDIRENDVVEVFELIQEQRQL"
misc_feature 483727..486117
/gene="infB"
/locus_tag="A1E_02210"
/note="translation initiation factor IF-2; Validated;
Region: infB; PRK05306"
/db_xref="CDD:180006"
misc_feature 484390..484545
/gene="infB"
/locus_tag="A1E_02210"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature 484624..485115
/gene="infB"
/locus_tag="A1E_02210"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature 484642..484665
/gene="infB"
/locus_tag="A1E_02210"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature order(484645..484647,484651..484653,484663..484668,
484675..484677,484684..484689,484735..484740,
484795..484800,484867..484872,484975..484977,
484987..484989)
/gene="infB"
/locus_tag="A1E_02210"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature order(484648..484668,484798..484800,484945..484950,
484954..484959,485053..485061)
/gene="infB"
/locus_tag="A1E_02210"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature 484717..484737
/gene="infB"
/locus_tag="A1E_02210"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature 484723..484725
/gene="infB"
/locus_tag="A1E_02210"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature 484783..484794
/gene="infB"
/locus_tag="A1E_02210"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature 484789..484845
/gene="infB"
/locus_tag="A1E_02210"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature 484945..484956
/gene="infB"
/locus_tag="A1E_02210"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature 485053..485061
/gene="infB"
/locus_tag="A1E_02210"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature 485146..485430
/gene="infB"
/locus_tag="A1E_02210"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature 485470..485796
/gene="infB"
/locus_tag="A1E_02210"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature 485842..486093
/gene="infB"
/locus_tag="A1E_02210"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene 486434..488014
/locus_tag="A1E_02215"
/db_xref="GeneID:5626397"
CDS 486434..488014
/locus_tag="A1E_02215"
/note="COG0532 Translation initiation factor 2 (IF-2;
GTPase)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492173.1"
/db_xref="GI:157803624"
/db_xref="GeneID:5626397"
/translation="MVIMSIFNKLQNLITPNIASKPASYPANSEFYFITFPKKTTDKE
QNAENTEFLVVLDNTIKQYDKESVRCNKKIIEAQAKYPVLSSKIDSQEAVKIVYDFGV
NSFSEVKKTIDTKYKTIKESIKPTVNKVYDFGVNSFSEVKKTIDTKYKTIKESIKPTV
NKVYDFGVNSFSEVKKTIDTKYKTIKESIKPTVNKVYDFGVNSFSEVKKTIDTKYKTI
KESIKPTVNKVYDFGVNSFSEVKKTIDTKYKTIKESIKPTVDKVYDFGVNSFSEVKKT
VDTKYKTIKESIKPTVDKVYDFWFKFKFNLSFQKVSNNDQVEEILNTPENELDEIFEK
MTYEKLAELINNIANEQAQKLVNYIMPCHFEKLMQFIPLDTLNMYIDQTLSLDELVEQ
KLKKLSNDDITDEQLENIIILVGEEKLVEKLDIIPNENLVRIMSNISNNKLATIIYHA
SDESLVRIIDIINSDNHHLSESLVGEIITLIHDKTCVKQEVEPYNVNYNMKLSGALSD
SNNNYGFSFNLEDEIIEL"
gene complement(488043..488723)
/gene="infB"
/locus_tag="A1E_02220"
/db_xref="GeneID:5626398"
CDS complement(488043..488723)
/gene="infB"
/locus_tag="A1E_02220"
/note="COG1214 Inactive homolog of metal-dependent
proteases, putative molecular chaperone"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_001492174.1"
/db_xref="GI:157803625"
/db_xref="GeneID:5626398"
/translation="MKILAFDTANNTASVAISENENILAYIEELNHSMQAENLMPMIE
DVMKAAKCSYDDLDYLAVTTGPGSFTGIRIGLASAKGILFAKENIKAVAVNNFEYAYF
RAITQVKKYDKIYVFLNAYRSQLYMQVFHKSGKIEEPLLIDFKYAIKLLTNDKGSIVC
CGSGLEFIYNQIMHLPSIITLPRFARVKAWVICRYIASKGRCVIKLNSSIEPLYIRPP
DAKIAKKG"
misc_feature complement(488052..488723)
/gene="infB"
/locus_tag="A1E_02220"
/note="Inactive homolog of metal-dependent proteases,
putative molecular chaperone [Posttranslational
modification, protein turnover, chaperones]; Region:
COG1214"
/db_xref="CDD:31407"
misc_feature complement(<488430..488633)
/gene="infB"
/locus_tag="A1E_02220"
/note="Glycoprotease family; Region: Peptidase_M22;
pfam00814"
/db_xref="CDD:201456"
gene complement(488806..489531)
/gene="recO"
/locus_tag="A1E_02225"
/db_xref="GeneID:5626399"
CDS complement(488806..489531)
/gene="recO"
/locus_tag="A1E_02225"
/note="involved in DNA repair and RecFOR pathway
recombination; RecFOR proteins displace ssDNA-binding
protein and facilitate the production of RecA-coated
ssDNA"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecO"
/protein_id="YP_001492175.1"
/db_xref="GI:157803626"
/db_xref="GeneID:5626399"
/translation="MNIKDIGVIVAKKPLKENTFIITVFTKNYGLYSGVVKASSKKSK
FIYQEGNIVDFLWMARLHEHIGIAKCELIKSYTGYFITNKTKLYAFNSIISLIKELLH
EREEYSNFFSFLINYLDNLSKKFFFRDYINFELALLDIAGYKLDLSKCAVSNVKQDLY
YVSPKSGRALSYEVGKPYKDKLLILPKFLLSDNSKITLEEKRQALTLTNYFFNRYLFH
NNRHAEARQAFMEYILHRCHPAT"
misc_feature complement(488824..489531)
/gene="recO"
/locus_tag="A1E_02225"
/note="DNA repair protein RecO; Reviewed; Region: recO;
PRK00085"
/db_xref="CDD:178852"
misc_feature complement(488878..489276)
/gene="recO"
/locus_tag="A1E_02225"
/note="Recombination protein O C terminal; Region: RecO_C;
pfam02565"
/db_xref="CDD:202286"
gene complement(489730..490062)
/gene="recO"
/locus_tag="A1E_02230"
/db_xref="GeneID:5626400"
CDS complement(489730..490062)
/gene="recO"
/locus_tag="A1E_02230"
/note="COG0191 Fructose/tagatose bisphosphate aldolase"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecO"
/protein_id="YP_001492176.1"
/db_xref="GI:157803627"
/db_xref="GeneID:5626400"
/translation="MIIVYEIRNLEEARDFLSSVEQKLMLTNHVSSVKYYGMLAIDYM
FKTLSKEFPEKVLDLTVDVRDDHAALFTAIKLGYKNIIYTGNSNEVRALLRRIGKAPT
ISYRSLTK"
gene complement(490059..491399)
/locus_tag="A1E_02235"
/db_xref="GeneID:5626748"
CDS complement(490059..491399)
/locus_tag="A1E_02235"
/note="Sms; stabilizes the strand-invasion intermediate
during the DNA repair; involved in recombination of donor
DNA and plays an important role in DNA damage repair after
exposure to mutagenic agents"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadA"
/protein_id="YP_001492177.1"
/db_xref="GI:157803628"
/db_xref="GeneID:5626748"
/translation="MTKDKKHYTCSNCGNINPKWSGQCFDCGVWGSIVEETVSSHKTI
IKTGSKQDFDKLSGNVAEQVRIPTPIGEFNRVLGGGLVLGAAILIGGDPGIGKSTLLL
QLAASNFASKVHCLYITGEESLNQIKLRAIRLNLTNYNTKILAATNLEDIITSIEANK
NNIDLVVIDSIQTITTKELSSPPGTVSQIRTCANELVNYAKQNNIIILLSCHVTKDGQ
LAGPKILEHLVDTVLYFEGEHNNHFRILRSYKNRFGGVGEIGVFEMSSSGLIEVTNPS
ELFLMKREQNVIGTSIFAGIEGSRPLLMEVQALIVPSNMVTPRHSAVGWDANRLSMIL
AVLISKIGLNFANYEVYLSIAGGLKITDPASDLAVAASLISAATGKPVPEQSIFFGEI
SLSGEIRKTAKAEMRVKEAVKLGFNKIICSKLENLTYKFISSVSHLKDLKEIIK"
misc_feature complement(490065..491399)
/locus_tag="A1E_02235"
/note="DNA repair protein RadA; Provisional; Region:
PRK11823"
/db_xref="CDD:183326"
misc_feature complement(490272..491378)
/locus_tag="A1E_02235"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:29987"
misc_feature complement(491106..491129)
/locus_tag="A1E_02235"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:29987"
misc_feature complement(order(490890..490895,491043..491045,
491049..491051,491106..491114,491124..491126))
/locus_tag="A1E_02235"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29987"
misc_feature complement(490893..490904)
/locus_tag="A1E_02235"
/note="Walker B motif; other site"
/db_xref="CDD:29987"
misc_feature complement(490131..>490304)
/locus_tag="A1E_02235"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
cl12214"
/db_xref="CDD:209472"
gene complement(491538..492110)
/locus_tag="A1E_02240"
/db_xref="GeneID:5626749"
CDS complement(491538..492110)
/locus_tag="A1E_02240"
/note="COG0742 N6-adenine-specific methylase"
/codon_start=1
/transl_table=11
/product="N6-adenine-specific methylase"
/protein_id="YP_001492178.1"
/db_xref="GI:157803629"
/db_xref="GeneID:5626749"
/translation="MLKIISGKYRNQIIHTAKNIKYRPSTGKIKEAIFSILTSGEFTD
NKLFNDNTHILDLFAGSGNFAFESLSRGAGLATLIDIDPSSLKIAEGFAKSLNIENKI
NFVNLNSLNLPKANKTFDLVFIDPPYHKDIVPKVMKLLVKNNWLKDGSIIVIEMAKLD
DYFLDENIEIIRKKLYSKSKLLILRYALAK"
misc_feature complement(491646..491951)
/locus_tag="A1E_02240"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(491736..491738,491784..491792,
491868..491873,491922..491942))
/locus_tag="A1E_02240"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(492119..494989)
/locus_tag="A1E_02245"
/db_xref="GeneID:5626750"
CDS complement(492119..494989)
/locus_tag="A1E_02245"
/note="COG1357 Uncharacterized low-complexity proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492179.1"
/db_xref="GI:157803630"
/db_xref="GeneID:5626750"
/translation="MTNLNIYKCEEKDLNDYLDYIKDNPNVSLNDFIKKTYFSNDKDK
IVIASLADQEINDKDLMNANFQGTILIDTVFNNCDFTNTILCDSDLTNVKFNDCKFIG
TDFRGANLHYTDFNYKDYDYDNYKIPNLKDKIRDIKLSFSDLERLNKYIDKDLEKERI
KEIVIDEVTNRKKYILAGEDEKTLWEVKSKELKTKQAELEDLKQNLDNPGIVTNFLNA
FWNSAETIAQNQQNKLAKINLLQQQVNKLETEVHVLDNLRMFCGKGLDSILEQLKDEK
IQITLDPSYIIGSTAKERDISKKYIKLTSQEFDLYLAEAAKQSDTKLSLTAFVRKHKK
LSEDIHIIPDLSEIDLSGKTLTNLNLKNTLFAAANLENIKILNCNLDFTNFEGANLQN
AVFQNVTARNAGFLFADLKNSKIKNSDMSRSYMPKIDLSEAEVTNSKFNAVMMVNADA
EKLVIKDSEWKNSNLTGISLAYADMQRVQMQGVVLNNALLDQANIISTNLENAFMHNA
HALEAKFKKQCNMKSITARNAYFSDAEFENILSLEEADLRNAIMERVNLVNANMNKAL
LDKANLEYANLTGAILTDASAQFAKLSNATLEKAEAEGLNIADAIAKNMNAKEANFKN
AIMKRADLTKANLEKAILENADMQAAEALDAIFKEANLKQANLKAANLARINKAGADF
DQAKVDDATKMHYTKGDAKGHLEHHDKDDKITSVNVNNEHDKLQDKIHAREKSGWFLK
TEVGQFCTKLAKSTTSSMSSITNFLASKKFLVGVAIVAGLALAAVPFVAMPMLLVTGT
ALTTKAIILGASILAGVAVAAGTYKFIQKPLRNIQKSFQNLTSSIDKYISPPPENIDE
LVTEKQQARQKAEAEKSKTREENFNNVNNNIDKAKEQDILKRVQNVTPKVEIKEKKDK
TVEKQQTKSSTFAAKVQPNTKNKGFAATIKDEQKNQGHKRNI"
misc_feature complement(<494651..494815)
/locus_tag="A1E_02245"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(494699..494815)
/locus_tag="A1E_02245"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(493739..493858)
/locus_tag="A1E_02245"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(493595..493828)
/locus_tag="A1E_02245"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(493025..493687)
/locus_tag="A1E_02245"
/note="Pentapeptide repeats containing protein [Function
unknown]; Region: COG1357"
/db_xref="CDD:31548"
misc_feature complement(493238..493366)
/locus_tag="A1E_02245"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(493046..493150)
/locus_tag="A1E_02245"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
gene complement(495040..495729)
/locus_tag="A1E_02250"
/db_xref="GeneID:5626751"
CDS complement(495040..495729)
/locus_tag="A1E_02250"
/note="COG1187 16S rRNA uridine-516 pseudouridylate
synthase and related pseudouridylate synthases"
/codon_start=1
/transl_table=11
/product="repair protein"
/protein_id="YP_001492180.1"
/db_xref="GI:157803631"
/db_xref="GeneID:5626751"
/translation="MQRLAKVISNSGVCSRRDAEKLIAEGQVKVDGITILAPATNVDI
SNQIEVSGILINQSQKPRLWIYYKPVGLITTHKDPLSRKTVFEDLTSLPRVISIGRLD
LNSEGLLLLTNSGDLARQFELPSNKLKRVYHVRAYGNPDILLKSEYKNLEIDGILYNP
YSIKLLRGNNTNAWFEIVLFEGKNREIRRIFEYFGLKVNKLIRVQYGSFTIGNLKPGD
YKEINNKILEK"
misc_feature complement(495055..495729)
/locus_tag="A1E_02250"
/note="16S rRNA uridine-516 pseudouridylate synthase and
related pseudouridylate synthases [Translation, ribosomal
structure and biogenesis]; Region: RsuA; COG1187"
/db_xref="CDD:31380"
misc_feature complement(495547..495726)
/locus_tag="A1E_02250"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(495601..495603,495607..495630,
495649..495651,495655..495660,495667..495672,
495676..495681,495685..495690,495721..495723))
/locus_tag="A1E_02250"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature complement(495058..495546)
/locus_tag="A1E_02250"
/note="Pseudouridine synthases catalyze the isomerization
of specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi); Region: PseudoU_synth; cl00130"
/db_xref="CDD:211430"
misc_feature complement(order(495166..495168,495424..495435))
/locus_tag="A1E_02250"
/note="active site"
/db_xref="CDD:211324"
gene 495922..496068
/locus_tag="A1E_02255"
/db_xref="GeneID:5626752"
CDS 495922..496068
/locus_tag="A1E_02255"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492181.1"
/db_xref="GI:157803632"
/db_xref="GeneID:5626752"
/translation="MMQKLIGSNLLILGTCIGSSMIALPMVLAKLGIVYNLVYNIIIL
LELI"
gene 496497..496643
/locus_tag="A1E_02260"
/db_xref="GeneID:5626753"
CDS 496497..496643
/locus_tag="A1E_02260"
/note="COG0814 Amino acid permeases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492182.1"
/db_xref="GI:157803633"
/db_xref="GeneID:5626753"
/translation="MIVEYNIKTMKQVGNNEQIFLVKKYVGKQIKILTLNDGTSNKAW
QICS"
gene complement(496743..498227)
/locus_tag="A1E_02265"
/db_xref="GeneID:5626590"
CDS complement(496743..498227)
/locus_tag="A1E_02265"
/note="unwinds double stranded DNA"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="YP_001492183.1"
/db_xref="GI:157803634"
/db_xref="GeneID:5626590"
/translation="MACNKINNDKNIDTKEEADIPIPRVLPSNIQAEQMLLGAILTNN
ELLNYVSEFLRLEHFFEPIHQKIYNAIEAITEKGLIATPITLRSMLTQDELFQKIEGS
EYLAKLITMSMMVINPIDYGKIIYDLAIKRNLINIGEEVVNNAYNSSLEVEAKEQIEY
AEAKLYNLASKGLNEKSFTKIGISISESLANINRAMKNNDHVIGISTGLIDLDNKLFG
FHNSDLIILAGRPSMGKTAFAINLALNACNNMRLKNIRDNQEIQSVGFFSLEMSSEQL
TTRLLSMCAEIDSTSLRTGVLGEEKYNRLRKEANTLSELQFFIDDTPALSITTIRTRA
RRMKRQHNLGILFIDYLQLIRGVSKAENRVSEIAEITQGLKAIAKELNIPVIALSQLS
RAVELREDKKPMLSDLRESGTIEQDADIVMFIYREEYYLTRKEPAADDAKHAEWLNKL
NKVYNIADIIVAKHRNGPIGNVSLYYDSQYSKFSNLEHRTFNAV"
misc_feature complement(496749..498182)
/locus_tag="A1E_02265"
/note="replicative DNA helicase; Provisional; Region:
PRK09165"
/db_xref="CDD:181676"
misc_feature complement(497847..498155)
/locus_tag="A1E_02265"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:201435"
misc_feature complement(496797..497597)
/locus_tag="A1E_02265"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:29985"
misc_feature complement(497520..497540)
/locus_tag="A1E_02265"
/note="Walker A motif; other site"
/db_xref="CDD:29985"
misc_feature complement(order(496800..496802,496833..496835,
496950..496952,497058..497060,497181..497183,
497520..497525))
/locus_tag="A1E_02265"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29985"
misc_feature complement(497181..497192)
/locus_tag="A1E_02265"
/note="Walker B motif; other site"
/db_xref="CDD:29985"
misc_feature complement(order(496860..496865,496950..496955,
497037..497063,497136..497144,497163..497168))
/locus_tag="A1E_02265"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:29985"
gene complement(498715..499350)
/locus_tag="A1E_02270"
/db_xref="GeneID:5626591"
CDS complement(498715..499350)
/locus_tag="A1E_02270"
/note="COG0163 3-polyprenyl-4-hydroxybenzoate
decarboxylase"
/codon_start=1
/transl_table=11
/product="aromatic acid decarboxylase"
/protein_id="YP_001492184.1"
/db_xref="GI:157803635"
/db_xref="GeneID:5626591"
/translation="MHINVFYKFFLLYTKLINYRTEMNKEKKIIIAISGASGAIYGIR
LLEILKQQNIETHLVISDGAALTIKAETTYSIEAIKNLANYYYDDKDLGATISSGSFK
TSGIIIAPCSMKTLASIAHSIEDTLISRAAGVVLKDRRKLILMTRETPLHIGHLENML
KVASYGGIIAPPVPAFYNNPASIDDIVNHSVTRILDCFDIETNLIKRWGSV"
misc_feature complement(498727..499221)
/locus_tag="A1E_02270"
/note="polyprenyl P-hydroxybenzoate and phenylacrylic acid
decarboxylases; Region: ubiX_pad; TIGR00421"
/db_xref="CDD:129515"
misc_feature complement(498886..499221)
/locus_tag="A1E_02270"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
gene 499345..501291
/locus_tag="A1E_02275"
/db_xref="GeneID:5626592"
CDS 499345..501291
/locus_tag="A1E_02275"
/note="binding of PriA to forked DNA starts the assembly
of the primosome, also possesses 3'-5' helicase activity"
/codon_start=1
/transl_table=11
/product="primosome assembly protein PriA"
/protein_id="YP_001492185.1"
/db_xref="GI:157803636"
/db_xref="GeneID:5626592"
/translation="MQIAKILLPVAKLFPLDYLIPKDLSVNIGDLVIVSFRNKELTGI
VWELVSDSEIQKLKTIHRKVSLNLNITPEVLELIKWMSVYYMSELGSIAKLVLPIDIA
AKPIKIKEQKVNNDFILPDLSEEQKQAVTVLNESNKPVIIKGVTGSGKTEIYFHLIAD
YLVKGKQVLIMLPEIALSTQIINRFIERFGFEPIIWNSSVTKAQKQMILRGILIDKVK
VVIGARSSLFLPFKNLGLIVIDEEHDESYKQDDGILYNARDTAIVRGTFDKAQIVLCS
ATPSIETMYNVDLGKYRLINLINRYKNAHLPNIEVIDMTKEKLPKNSYLSKILIEAIK
ANLANKKQTLLFLNRRGYAPLMLCKACGYRLTCKYCSSWMVVHKANKKLECHHCGYQS
KIFSVCPECLEDATLTICGPGIERIEEEAKALFPERKIAVISKDHAKNTEKIAQILHQ
IENLEIDILIGTQMITKGYHFPNLTLVGVIDADLGSNNADLRASERTFQLLHQVGGRA
GRGDSKGLVYLQSYCPNNIIFSYVKVSYEDSFFAHELEIRKSAYMPPFSKMASVILSG
ASEHKILAIAKNMVRIAPKANVKILGPASSLMSKLAGKYRYRILIIADKKFNLQKYLK
FWLSLIKIPSFCQIKIDIDPKSFY"
misc_feature 499345..501285
/locus_tag="A1E_02275"
/note="primosome assembly protein PriA; Validated; Region:
PRK05580"
/db_xref="CDD:180144"
misc_feature 499762..500181
/locus_tag="A1E_02275"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 499783..499797
/locus_tag="A1E_02275"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 500062..500073
/locus_tag="A1E_02275"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature order(500578..500589,500650..500655,500728..500736)
/locus_tag="A1E_02275"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature 500599..500874
/locus_tag="A1E_02275"
/note="helicase superfamily c-terminal domain; Region:
HELICc; smart00490"
/db_xref="CDD:197757"
misc_feature order(500752..500754,500851..500853,500863..500865,
500872..500874)
/locus_tag="A1E_02275"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(501787..501903)
/locus_tag="A1E_02280"
/db_xref="GeneID:5626593"
CDS complement(501787..501903)
/locus_tag="A1E_02280"
/note="COG1198 Primosomal protein N' (replication factor
Y) - superfamily II helicase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492186.1"
/db_xref="GI:157803637"
/db_xref="GeneID:5626593"
/translation="MAQENIKPVVPTKPTSEQIKAWDEAYKKHTDLTAAQGI"
gene 502061..503053
/locus_tag="A1E_02285"
/db_xref="GeneID:5626594"
CDS 502061..503053
/locus_tag="A1E_02285"
/note="catalyzes the formation of porphobilinogen from
5-aminolevulinate"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_001492187.1"
/db_xref="GI:157803638"
/db_xref="GeneID:5626594"
/translation="MYPLVRLRRNRKAFWLRELIAESNLSINDLVLPLFVVDGHNERQ
EIKTMPGIYRLPINQIVETAKRAAELGINAIALFPSIDQSLKSKNANEAYNLDNLICR
TIRSIKNANVDIGIICDVALDPYTTHGHDGIVYHGEVDNDKSVRALSNQALVLAKAGV
DIVAPSDMMDGRIGAIRKYLDKEGFINVGILAYAAKYASSFYGPFRDAIRSNKRNYLD
KSSYQMDVRNIKEAMLEIEHDISEGADMVMVKPGMPFLDVIREAANNFNAKIFAYQVS
GEYAMLKFAAEAGAIDWESTIIESLTSFKRAGATAILTYAALEVAEILKNNKIK"
misc_feature 502076..503035
/locus_tag="A1E_02285"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region:
ALAD_PBGS_aspartate_rich; cd04823"
/db_xref="CDD:88599"
misc_feature order(502076..502084,502091..502096,502121..502129,
502199..502201,502208..502210,502481..502486,
502565..502570,502655..502663,502721..502726,
502733..502744,502751..502753,502760..502765,
502817..502831,502901..502903,502946..502948,
502955..502957,502967..502969,502976..502978)
/locus_tag="A1E_02285"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88599"
misc_feature order(502076..502078,502568..502570,502763..502765,
502775..502777)
/locus_tag="A1E_02285"
/note="allosteric magnesium binding site [ion binding];
other site"
/db_xref="CDD:88599"
misc_feature order(502415..502417,502421..502423,502427..502429,
502451..502453,502556..502558,502646..502648,
502664..502666,502673..502678,502691..502693,
502715..502717,502727..502729,502808..502810,
502877..502879,502886..502888,503003..503005)
/locus_tag="A1E_02285"
/note="active site"
/db_xref="CDD:88599"
misc_feature order(502427..502429,502451..502453,502559..502561)
/locus_tag="A1E_02285"
/note="aspartate-rich active site metal binding site;
other site"
/db_xref="CDD:88599"
misc_feature order(502646..502648,502808..502810)
/locus_tag="A1E_02285"
/note="Schiff base residues; other site"
/db_xref="CDD:88599"
gene 503168..504733
/locus_tag="A1E_02290"
/db_xref="GeneID:5626595"
CDS 503168..504733
/locus_tag="A1E_02290"
/EC_number="4.2.1.24"
/note="COG0113 Delta-aminolevulinic acid dehydratase"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_001492188.1"
/db_xref="GI:157803639"
/db_xref="GeneID:5626595"
/translation="MRQNKKSVFKGWNFLRPKVGGANDVGEHGGVYQSSDGKITAMIK
KETSISKNIAEFLGSQIFETISPGNGAKVNLISPDHFNKSKVFDSQIYVKSEFFENYI
SDMYVDMDKHMSATTKPSSWFRKDGGRPLFMGTRNKLFRTLENAFKEIKYQNFENIMP
ASLLIGDFDIHVGNIGVIRDQKNPKTLPKLVRIDFAGSFNNLTNNIYPNSRAKHLPWF
GPTNHFREFPSSFRKKNPKFADSLLAVSKIDLSKTIDKSFDELTKYYSNEAIAEFAKQ
AIPKKFNNTKSKEITPEEIKTSLIDVMQKRQESLKEYGLEIKINSLISKKYSFPYYEV
KEQELKTLMREYPDYFEKILNYKASKKGGQKIKLRNKVTTNVTRILEILGVRDSAKKH
LIKTIKRLNEDIKYERNLTDSSDKVKIKKEPEQKLVKTNVDANREYVDALEKFKKEVE
TDYIVSVTPSQLGLTKKAKTKDQDLLKLDEEDLKHIKNLKEKIMKPTKTTLVDVDNKK
PFKSKASKAEIRK"
gene complement(504723..506093)
/locus_tag="A1E_02295"
/db_xref="GeneID:5626600"
CDS complement(504723..506093)
/locus_tag="A1E_02295"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit N"
/protein_id="YP_001492189.1"
/db_xref="GI:157803640"
/db_xref="GeneID:5626600"
/translation="MLLLLPEITLIIIALLGQFFAVMIPNKNRIISNIIILLCILSIF
LTFHYSSYEGVWHSFATGINIGISQSIVLLFTIISIIIYRGYSILANEKLKCEFITLM
LLSTVGIFVAISSQNFLLLFCGMELTALTSYTLAGFKLNDIKSSEGALKYFILGSLVS
CLSLFGISFIYGFGGSVQFEDILYKLNNSSSTNIGLIIGIVLFLSSIFFKLSSVPLHF
WAPDVYEGSPIASVTYFTAASKIGMVAVLLNISKFIIGDYHPINYNLIKIIAILSMLF
GSFGAIRQTSLKRLMAYSTILNIGYVLIGVLLHNQDGYKTALLYILIYAVGSIGFFTC
LIMLLGKDADKASFKTIQGIAENHKTIAAVISIVMFSMIGIPPLTGFFGKYYLFYQAI
NQGEFALAYCGIFTSIVAAFYYLKVVKAMYFSKKIELMNLPIQYGLLLINYLVVGFLL
LGSFIF"
misc_feature complement(504726..505802)
/locus_tag="A1E_02295"
/note="NADH dehydrogenase subunit 2; Provisional; Region:
ND2; MTH00144"
/db_xref="CDD:177202"
misc_feature complement(504927..505751)
/locus_tag="A1E_02295"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 506111..506275
/locus_tag="A1E_02300"
/db_xref="GeneID:5626601"
CDS 506111..506275
/locus_tag="A1E_02300"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492190.1"
/db_xref="GI:157803641"
/db_xref="GeneID:5626601"
/translation="MEIWILVNKSFFINKLIYNYCTLKLHLIKIIFFYTLIVEKFNTK
NYFMQKKKKL"
gene 506505..506684
/locus_tag="A1E_02305"
/db_xref="GeneID:5626602"
CDS 506505..506684
/locus_tag="A1E_02305"
/note="COG1007 NADH:ubiquinone oxidoreductase subunit 2
(chain N)"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001492191.1"
/db_xref="GI:157803642"
/db_xref="GeneID:5626602"
/translation="MLNIAEYHMKVLKNKKFPFIYPLVFYNGIQKYNVPLNLWALFEK
SELVQATWINDCQLN"
misc_feature <506505..>506678
/locus_tag="A1E_02305"
/note="Putative transposase, YhgA-like; Region:
Transposase_31; pfam04754"
/db_xref="CDD:203082"
gene 507004..507237
/locus_tag="A1E_02310"
/db_xref="GeneID:5626603"
CDS 507004..507237
/locus_tag="A1E_02310"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492192.1"
/db_xref="GI:157803643"
/db_xref="GeneID:5626603"
/translation="MWITKYRYKVLTYDIKKRVREIIAVVVEELNVKIENGVISSDHI
HIFANIPPHIKVSEFVQKAKGRSSKKYKKNFQY"
misc_feature 507004..>507186
/locus_tag="A1E_02310"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene 507267..507389
/locus_tag="A1E_02315"
/db_xref="GeneID:5626604"
CDS 507267..507389
/locus_tag="A1E_02315"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492193.1"
/db_xref="GI:157803644"
/db_xref="GeneID:5626604"
/translation="MVREYFSATSGNVTDDMINEYINRHTDAHEPAMTTNIRLE"
misc_feature <507273..507341
/locus_tag="A1E_02315"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:242138"
gene 507737..508609
/locus_tag="A1E_02320"
/db_xref="GeneID:5626605"
CDS 507737..508609
/locus_tag="A1E_02320"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492194.1"
/db_xref="GI:157803645"
/db_xref="GeneID:5626605"
/translation="MYLLSFILKGVTTLFRQLWLSVSSIEFYTDVYRNYQGYGIRYLF
TVSFIPSIIYCIFILNYIITLKDYFNGIQSSKVTDNIEYIINQLPEIKYNNSKILVEE
VEPIYLYSKNNNKIVVIDTKNQVSNKEKSKIPFVLEENKLRINLIVANTKKNFPSTVN
YSEIFKQNEVILTPEIIKKYFANNLLYVANLFIYFGMPVIILFWFVTFLLERSIIVLL
VYSLANLLTTKTSIQTSIRLVMFSSGVPIILQPVIIILIPELSILLQLLQMLTTCLVF
IAIWQINKSLSSYI"
gene 508865..508969
/locus_tag="A1E_02325"
/db_xref="GeneID:5626760"
CDS 508865..508969
/locus_tag="A1E_02325"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492195.1"
/db_xref="GI:157803646"
/db_xref="GeneID:5626760"
/translation="MLKAAYLKPDQLVIHERKATGVRKIEVKRNLNFF"
gene 509686..510792
/locus_tag="A1E_02330"
/db_xref="GeneID:5626761"
CDS 509686..510792
/locus_tag="A1E_02330"
/note="COG1104 Cysteine sulfinate desulfinase/cysteine
desulfurase and related enzymes"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492196.1"
/db_xref="GI:157803647"
/db_xref="GeneID:5626761"
/translation="MIYLDHNATTVIDFRVKEFIISLMDMELNPSSAHSSGRFAKNII
EIARSQIATALGITLSSREYDIAFTSSGTESNNLIMKNFYDGDIFISAIEHLSIYSHI
KYAPNIKIIKVDNQGLVDLKHLEELLSQSSTAKKLVSVMMANNESGVIQDIAEISKIT
KKYEAKFHSDLIQSLGRIPINIKDLGLDFATISGHKIGAGQGSSTLISNSNFQVTPMI
IGGGQEKGIRSGTENVLAIAGLGLAAELITKDISEKYIKIKSLQATLEKKLKEYPKVN
IISENVSRLPNTSLFTVPGTDAQIKLIGFDLRNICVSSGSACSSGKISKSHVLTNMGV
EEEEAKSSIRVSLSHNNTIEDIEAFIKAFEEVYD"
misc_feature 509686..510789
/locus_tag="A1E_02330"
/note="Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and metabolism];
Region: NifS; COG1104"
/db_xref="CDD:31301"
misc_feature 509692..510726
/locus_tag="A1E_02330"
/note="cysteine desulfurase DndA; Region: DNA_S_dndA;
TIGR03235"
/db_xref="CDD:163191"
misc_feature order(509899..509904,509911..509913,510109..510111,
510193..510195,510202..510204,510262..510264,
510271..510273)
/locus_tag="A1E_02330"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 510271..510273
/locus_tag="A1E_02330"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 510902..512134
/locus_tag="A1E_02335"
/db_xref="GeneID:5626762"
CDS 510902..512134
/locus_tag="A1E_02335"
/EC_number="1.6.5.3"
/note="catalyzes the removal of elemental sulfur from
cysteine to produce alanine; involved in NAD biosynthesis"
/codon_start=1
/transl_table=11
/product="cysteine desulfurase"
/protein_id="YP_001492197.1"
/db_xref="GI:157803648"
/db_xref="GeneID:5626762"
/translation="MNPQLHNIILPIYMDYQATTPLDPRVMEAMLPYFTTKFGNPHSR
SHSFGWEAENAVEEARSRVAKLIGADAKEIIFTSGATESNNLAIKGIAKFYGNKKNHI
ITVVSEHKCVLDACRHLEQEGIKITYLPINPNGIIDLEILKESITNQTMLVSVMAVNN
EIGVIQPLKEIGKICRERGVFLHSDIAQGFGKIPINVNEFNIDLASISGHKIYGPKGV
GALYVRKKPRIRVTPLINGGGQERGMRSGTLPTPLIVGLGMAAEIAYNEMEKDNKHVS
YLFDRFLNNIKQKISEVYLNGDKDQRYKGNLNLSFAGVEGESIILAIKDLAVSSGSAC
TSASLEPSYVLRSMGIGEELAHTSIRFGIGKFTTEQEIDYAVDLICSKIDKLRELSPL
WEMMQQGIDLKKIKWASH"
misc_feature 510923..512131
/locus_tag="A1E_02335"
/note="cysteine desulfurase; Provisional; Region:
PRK14012"
/db_xref="CDD:184450"
misc_feature 510938..511984
/locus_tag="A1E_02335"
/note="cysteine desulfurase DndA; Region: DNA_S_dndA;
TIGR03235"
/db_xref="CDD:163191"
misc_feature order(511139..511144,511151..511153,511370..511372,
511454..511456,511463..511465,511523..511525,
511532..511534)
/locus_tag="A1E_02335"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 511532..511534
/locus_tag="A1E_02335"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 512223..512624
/locus_tag="A1E_02340"
/db_xref="GeneID:5626763"
CDS 512223..512624
/locus_tag="A1E_02340"
/note="COG0822 NifU homolog involved in Fe-S cluster
formation"
/codon_start=1
/transl_table=11
/product="scaffold protein"
/protein_id="YP_001492198.1"
/db_xref="GI:157803649"
/db_xref="GeneID:5626763"
/translation="MAYSKKVIDHYENPRNVGSLNKESQNVGTGLVGAPACGDVMKLQ
IEVDDNGIITDAKFKTFGCGSAIASSSLVTEWVKGRSINDAETIKNTEIAKELSLPPV
KLHCSLLAEDAIKAAIADYKQKKQAKNTLKT"
misc_feature 512223..512597
/locus_tag="A1E_02340"
/note="NifU homolog involved in Fe-S cluster formation
[Energy production and conversion]; Region: IscU; COG0822"
/db_xref="CDD:31164"
misc_feature 512229..512573
/locus_tag="A1E_02340"
/note="Iron-sulfur cluster scaffold-like proteins; Region:
IscU_like; cd06664"
/db_xref="CDD:143480"
misc_feature order(512229..512237,512244..512249,512331..512336,
512409..512411,512415..512417,512526..512531,
512535..512540)
/locus_tag="A1E_02340"
/note="trimerization site [polypeptide binding]; other
site"
/db_xref="CDD:143480"
misc_feature order(512331..512333,512409..512411,512538..512540)
/locus_tag="A1E_02340"
/note="active site"
/db_xref="CDD:143480"
gene 512621..512953
/locus_tag="A1E_02345"
/db_xref="GeneID:5626764"
CDS 512621..512953
/locus_tag="A1E_02345"
/note="COG0316 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="Iron-sulfur cluster assembly accessory protein"
/protein_id="YP_001492199.1"
/db_xref="GI:157803650"
/db_xref="GeneID:5626764"
/translation="MKNVISLTDSAAKQIKLLIAKRDKPTFGIRVGVKSGGCAGQTYY
VEYADSKNQFDEIVEAKGVRILIDPKALMYILGSKMDYVETKFKSQFTFTNPNEKGNC
GCGKSFSV"
misc_feature 512639..512950
/locus_tag="A1E_02345"
/note="Iron-sulfur cluster assembly accessory protein;
Region: TIGR00049"
/db_xref="CDD:161681"
gene 513083..514399
/locus_tag="A1E_02350"
/db_xref="GeneID:5626765"
CDS 513083..514399
/locus_tag="A1E_02350"
/note="COG0531 Amino acid transporters"
/codon_start=1
/transl_table=11
/product="putrescine-ornithine antiporter"
/protein_id="YP_001492200.1"
/db_xref="GI:157803651"
/db_xref="GeneID:5626765"
/translation="MSQKLGFWAVFALVTGSQIGTSVFILPLSLAPFGVYSIWGWVLS
LFGAMSIALVFSCLCAKFPKTGGPHVYVWASFGDKIAFFTGWTYWVISFVSTSIVVIS
AIGYLTPFFKSQAVLDLILQIILLSAILVLNLKGPEVAGKVEFYLTLLKFVPLLVVGL
AALSHFNIDNIAIAEEVENLSIPTIMGRVALLTFWGFIGVECATTTAGAVTDPAKTIP
RAIMLGTLCVAALYIINSIGIMGLIPAAKLIGSKAPYADAATLLFGGKWSSVIAVIAS
IICIGTLNAWVLTSGQIALGLAEDGLLPKFFAKKNSNNAPTYGIIVSCLGIVPLLVFT
ANDNLAAQITQIIDFSVIAFLFVYLICSLAFLKVILSSKEKCSYYYVLIAIISIIFCS
WVIYTTPVKTIIIATSFTILGIPLYYMWYRSSKQYVAKSSVSPPVT"
misc_feature 513086..514360
/locus_tag="A1E_02350"
/note="arginine:agmatin antiporter; Provisional; Region:
PRK10644"
/db_xref="CDD:182613"
gene 514480..516357
/locus_tag="A1E_02355"
/db_xref="GeneID:5626423"
CDS 514480..516357
/locus_tag="A1E_02355"
/note="COG0006 Xaa-Pro aminopeptidase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492201.1"
/db_xref="GI:157803652"
/db_xref="GeneID:5626423"
/translation="MIKERITLLRSLFTEYNIDGYIIPSNDKYMSEYVPDYAKRLEYI
TGFTGSNGMVIICKDVALFFTDGRYLEQANKELDLELFKIFDLKDISTLNKDNSERFR
QDLQNSLVSSFLNYVVGYDSELFTYPAISNLKFKFQKINGNLVDKIWHNQLLEPNSKV
YLHDIEFAGSSHLEKIKQCRKTLDSLCRVNDNKQGWHHTTVSALVILDSSSICWLLNL
RSSDVAYTPLMFAKVILTSTKLYLFIAPSRIDADIINARPEITILPEKEFEKILRDSE
NIFIDANIASVYIMDLISDKKVHKITDPCLIQKACKNEIEIKYAIDFHIKDAVALCEF
FADFFQCHPCESVDPGKDSMDYRLCGNDIGENWNDSITEYTIGLKLTEYRARQEGYVS
DSFPTICGFQENSAIIHYRADPKTAKKIIEQGILLIDSGGQYRGATTDITRTIVIGTP
TDEQKKRYTQVLKGHIALARAKFPKNIVVGANLDILARQYLWQEMLDYPHSTGHGVGS
FLSVHEGPQSINLRNKTVLKAGMILSNEPGFYIPGKYGIRIENLMYVKENSGWLEFET
LSLVPYASKLIDVKLLNIDEINYIKEYYNKIRDKIYDLLSTQARNWLNNEINLFLQSL
L"
misc_feature 514492..>514860
/locus_tag="A1E_02355"
/note="Creatinase/Prolidase N-terminal domain; Region:
Creatinase_N; pfam01321"
/db_xref="CDD:201727"
misc_feature 514912..516195
/locus_tag="A1E_02355"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:30356"
misc_feature 515449..516174
/locus_tag="A1E_02355"
/note="X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also
known as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid, including
proline, that is linked with proline; Region: APP;
cd01085"
/db_xref="CDD:29970"
misc_feature order(515704..515706,515764..515766,515797..515799,
516001..516003,516085..516087,516127..516129)
/locus_tag="A1E_02355"
/note="active site"
/db_xref="CDD:29970"
gene 516449..516523
/locus_tag="A1E_t05708"
/db_xref="GeneID:5626424"
tRNA 516449..516523
/locus_tag="A1E_t05708"
/product="tRNA-Gln"
/db_xref="GeneID:5626424"
gene complement(516641..516717)
/locus_tag="A1E_t05710"
/db_xref="GeneID:5626425"
tRNA complement(516641..516717)
/locus_tag="A1E_t05710"
/product="tRNA-Arg"
/db_xref="GeneID:5626425"
gene complement(516744..517727)
/locus_tag="A1E_02360"
/db_xref="GeneID:5626426"
CDS complement(516744..517727)
/locus_tag="A1E_02360"
/codon_start=1
/transl_table=11
/product="octaprenyl-diphosphate synthase"
/protein_id="YP_001492202.1"
/db_xref="GI:157803653"
/db_xref="GeneID:5626426"
/translation="MNIIVKIQQDLKEEVTKLNNLIISCLKSDEGLIEIVGKYLLEAG
GKRIRPLLTIITAKMFDYKGDNHIKLASAVEFIHTATLLHDDVVDDSTLRRFKPTANV
IWGSKTSILVGDFLFSQSFKLMVAAGSIKAMNILAKASAIISEGEVVQLVKLNERRII
TIDEYQQIVKSKTAELFGASCKVGAIIAEQVDHVSKDMQDFGKLLGTIFQVIDDLLDY
LGDDKQVGKNIGDDFLEGKVTLPLIFLYNTLEQDKQLWLQNVIKCDKRTNEEFIKVRN
LMIEHEIYNETVNYLSNLENETNKLLNKIPVQNIYKDYLFSIMRFILDRSY"
misc_feature complement(516747..517712)
/locus_tag="A1E_02360"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature complement(516996..517646)
/locus_tag="A1E_02360"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(517017..517019,517032..517034,
517047..517049,517077..517079,517086..517091,
517200..517202,517209..517214,517278..517280,
517287..517289,517443..517448,517461..517466,
517470..517478,517482..517490,517497..517499))
/locus_tag="A1E_02360"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(517461..517490)
/locus_tag="A1E_02360"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(517017..517019,517032..517034,
517047..517049,517077..517079,517086..517091,
517212..517214,517278..517280,517443..517448,
517461..517463,517470..517475))
/locus_tag="A1E_02360"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(517086..517091,517212..517214,
517443..517448,517461..517463,517470..517475))
/locus_tag="A1E_02360"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(517212..517214,517278..517280,
517443..517448,517461..517463,517470..517475))
/locus_tag="A1E_02360"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(517011..517025,517032..517049,
517065..517070,517413..517457))
/locus_tag="A1E_02360"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(517017..517019,517032..517034,
517047..517049,517077..517079,517086..517091))
/locus_tag="A1E_02360"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(517839..519500)
/locus_tag="A1E_02365"
/db_xref="GeneID:5626213"
CDS complement(517839..519500)
/locus_tag="A1E_02365"
/note="COG0142 Geranylgeranyl pyrophosphate synthase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492203.1"
/db_xref="GI:157803654"
/db_xref="GeneID:5626213"
/translation="MKKTFKIILFISIFIILAYSGLWFAIMLSVSHSINQKYAGTDLN
IEEADNNPNQQYLIKFSKVQPYGFPFKWGISVINWQEESINRAIEFTSPINIGYNLLK
QNLFIHFSGEAFGRFKPVQRGFGVRFYNDNCILSAKIPLNFKLFKIVWSKKNLFEIIN
FIKKITFNSGKTEIFDLVDNQKLYEEGHTIFTMLFDKSKYYTNKQDFLENIPQKLEIY
YETEIIQSNLEDRIIPAGLLLYRLAWNNNFKFSGNFLISTSSLHFKDIAKDLIIEVTN
AKINSNGFENNINLLYKGKLNDFGNNNIDLLLDTKFKLKHGFIIGLLEVIKKYYDKQD
YLFKISDNKIYQGLHNELSYILNNNKQYNFSILEDRQYNFHLNINLVTELNKLTRAQI
NSLSLYSNASGFNITNETIINALKDSYSKGVIIINNYAKIIDVISPYIYGVGNFKNFS
EESKKVYGDTLKSFLKTISDHPNSSNLIDASIEYVFDLSDLNKAKIGTIDDINKLIPL
YYLSLYQAAAKKVKPGENIKDKIMELIPNANQKILEQCILDELEL"
gene complement(519660..521171)
/locus_tag="A1E_02370"
/db_xref="GeneID:5626214"
CDS complement(519660..521171)
/locus_tag="A1E_02370"
/note="COG3202 ATP/ADP translocase"
/codon_start=1
/transl_table=11
/product="ADP,ATP carrier protein"
/protein_id="YP_001492204.1"
/db_xref="GI:157803655"
/db_xref="GeneID:5626214"
/translation="MLSPKIFFEKVKEIIWPIERNELKLFIPMALMMLCILFNFGALR
SIKDSLVVPSMGAEIISFLKLWLVLPSCVIFTILYVKLSNKLNFEYIFYVIVGSFLLF
FLLFAYIIYPNQDIYHPNDEMINNLIASYPNFKWFIKIGSKWSYALMYIFSELWSAVV
INLMFWQFANHIFDTSKAKRFYPVLGMVGNIGLIIAGSVLVFFSSGHGIIDSELLPDS
FNSSYQNAIMLQPIMSIIVTAGIIAILLFRIINRLILTDSINVLDVKKVTAKTKTKLS
VIESIKLVIQSKYIGRIALLIICYGLLINIVEGPWKAKIKALYPNTVDYVNFMGRFNI
WMGISCVTFMVIGSNILRRLGWLISALLTPIMLSITGLIFFIFIIFIEEIPSYFGVGD
FNLLYAAIIVGAIQNILSKSSKYSLFDSTKEIAYIPLSLELRTKGKAAVEVIGTKFGK
SLGAFIQSLIFIIIPNATFDSIIIYLLVIFIVMMSLWIWNVIKLNKEYIELCT"
misc_feature complement(519678..521171)
/locus_tag="A1E_02370"
/note="TLC ATP/ADP transporter; Region: TLC; pfam03219"
/db_xref="CDD:146045"
misc_feature complement(519666..521159)
/locus_tag="A1E_02370"
/note="ATP/ADP translocase [Energy production and
conversion]; Region: COG3202"
/db_xref="CDD:33015"
gene complement(521420..521797)
/locus_tag="A1E_02375"
/db_xref="GeneID:5626215"
CDS complement(521420..521797)
/locus_tag="A1E_02375"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001492205.1"
/db_xref="GI:157803656"
/db_xref="GeneID:5626215"
/translation="MREIIAVVVEELNVKIENRVISSDHIHIFANIPPHIKVSEFVQK
AKGRSSKKIQEEFPILRKKYWGRHLWVVREYFSATSGNVTDDMINEYINRHTDAHEPV
MTTNINFLTCKCLVRKKASVNLG"
misc_feature complement(521513..>521797)
/locus_tag="A1E_02375"
/note="Transposase IS200 like; Region: Y1_Tnp; pfam01797"
/db_xref="CDD:201979"
gene 522057..523307
/locus_tag="A1E_02380"
/db_xref="GeneID:5626216"
CDS 522057..523307
/locus_tag="A1E_02380"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="ampG protein"
/protein_id="YP_001492206.1"
/db_xref="GI:157803657"
/db_xref="GeneID:5626216"
/translation="MLNNSCLCIIWLFGFISGFNLMITGNTLNYWLARENIALQTIGI
LSFITLPYSINFLLAPVFDALQIKYLNKIFGHRLSWICLTSSALVFLVYIFSFLDPRT
NLLLFAFTALIISFFSAVQDTILSALRTEIVPKESLVFTSGIYICGYRVGMLLAGSGA
IYLSIYLTFNAIYKIFAGLVFIYLILLIVGIKYCYLNENNIQIIKNDIKNNQNKKNII
NFIYNALQPIGSVYFIILILIFLVLYRLPDNLINVMINPFLLHLGYDAFEIASVGKFW
GVVGAIIGGLVGGVIMKHKNILNSILLFGIIHALGHIVFIFLEINGKSSLLLFITIGI
ESITGGMTMTTYIAFISSLCQGKFRATQYSFLSSMMGISRSIFPIISGYIVVNFGWQN
FFLFTTIITIPSLLILLKLKTKLQ"
misc_feature 522081..>523226
/locus_tag="A1E_02380"
/note="muropeptide transporter; Validated; Region: ampG;
PRK11010"
/db_xref="CDD:182898"
misc_feature 522108..523172
/locus_tag="A1E_02380"
/note="AmpG-like permease; Region: 2A0125; TIGR00901"
/db_xref="CDD:162099"
gene 523773..524414
/locus_tag="A1E_02385"
/db_xref="GeneID:5626811"
CDS 523773..524414
/locus_tag="A1E_02385"
/codon_start=1
/transl_table=11
/product="lysine efflux permease"
/protein_id="YP_001492207.1"
/db_xref="GI:157803658"
/db_xref="GeneID:5626811"
/translation="MNNDILSAFLHGIVLALGLIVPLGVQNIFIFNQGAKQPKFSKVL
PSIIAASICDTILICMAVLGISLLILEISWLKLFIFIVGFIFLIYIGYNTWNQLPIDL
TTNSQAFSTKKQILFAISVSILNPHAIMDTIVIIGTSALKYNGSAKIIFTLTCILISW
IWFFSLAVAGYNITKLNKSSTILIMINKIAAIIIWVVAVYIGVQLLHEIGFIN"
misc_feature 523785..524315
/locus_tag="A1E_02385"
/note="Lysine efflux permease [General function prediction
only]; Region: COG1279"
/db_xref="CDD:31470"
gene 524392..525072
/locus_tag="A1E_02390"
/db_xref="GeneID:5626812"
CDS 524392..525072
/locus_tag="A1E_02390"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492208.1"
/db_xref="GI:157803659"
/db_xref="GeneID:5626812"
/translation="MKSVLLTRSLEENRKIIKEMSKSNLDLHYIHCPLIKYKILDFNV
NILANYSNIIITSKYAAIIITKHYINQNIWVVGNTSKKLLENKGLKVTYTAKNLEDLI
EHFPPKLYEQTIYLSSNEITKDLPNEIARHIIYSVEYLNELPVSIIKEFEKNIDFILC
YSQNSAKTLVKLLLQNNLLQYVQESLVVAISLKVANIVRPFTKNVVYCDDQNPNDIIK
LLSDNAKI"
misc_feature 524401..525051
/locus_tag="A1E_02390"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature order(524413..524415,524560..524568,524626..524628,
524743..524745,524794..524796,524800..524802,
524872..524886)
/locus_tag="A1E_02390"
/note="active site"
/db_xref="CDD:119440"
gene 525059..525841
/locus_tag="A1E_02395"
/db_xref="GeneID:5626813"
CDS 525059..525841
/locus_tag="A1E_02395"
/note="COG1279 Lysine efflux permease"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492209.1"
/db_xref="GI:157803660"
/db_xref="GeneID:5626813"
/translation="MQKFNSLFKSKNIFFTAIVIFVLSFSTFYHNRADILKLFKSDAK
DLSQTFYTVEESKLNISEEKNEAPLLSTQSLLNYVSSLKFPEALLPKQKIETIVNAAL
SGYKEQGAKPITNRKVTNGTIGMLKSIDYTADTSKIYTIGYIHYLLNVNLLVYNFMQD
KDYSKELRIVK 