LOCUS NC_010634 4695619 bp DNA circular BCT 23-DEC-2012
DEFINITION Yersinia pseudotuberculosis PB1/+ chromosome, complete genome.
ACCESSION NC_010634
VERSION NC_010634.1 GI:186893344
DBLINK Project: 59153
BioProject: PRJNA59153
KEYWORDS .
SOURCE Yersinia pseudotuberculosis PB1/+
ORGANISM Yersinia pseudotuberculosis PB1/+
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Yersinia.
REFERENCE 1 (bases 1 to 4695619)
AUTHORS Challacombe,J.F., Bruce,D., Detter,J.C., Green,L., Land,M.,
Munk,C., Lindler,L.E., Nikolich,M.P. and Brettin,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Yersinia pseudotuberculosis
PB1/+
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4695619)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (28-APR-2008) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4695619)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Challacombe,J.F., Green,L., Lindler,L.E., Nikolich,M.P.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (07-APR-2008) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP001048.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4001066
The authors wish to acknowledge the Intelligence Technology
Innovation Center for funding the sequencing. For more information
about this strain contact Mikeljon Nikolich, Division of
Cummunicable Diseases and Immunology, Department of Bacterial
diseases, Walter Reed Army Institute of Research, Silver Spring, MD
(Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL)
Source DNA and bacteria available from Mikeljon Nikolich
(Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL)
Contacts: Mikeljon Nikolich (Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL)
David Bruce (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4695619
/organism="Yersinia pseudotuberculosis PB1/+"
/mol_type="genomic DNA"
/strain="PB1/+"
/db_xref="taxon:502801"
gene 37..1389
/gene="dnaA"
/locus_tag="YPTS_0001"
/db_xref="GeneID:6261774"
CDS 37..1389
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_001870457.1"
/db_xref="GI:186893345"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:6261774"
/translation="MQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYL
NNINGLLNDFCGTEVPLLRFEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDN
SPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLG
KTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID
DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA
IEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG
RAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQM
AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS
"
misc_feature 37..1386
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 37..195
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 424..855
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 499..522
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(502..525,688..690,790..792)
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature <667..1077
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 676..693
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 826..828
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1111..1380
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1180..1182,1204..1209,1228..1230,1246..1254,
1279..1293,1300..1302,1309..1314)
/gene="dnaA"
/locus_tag="YPTS_0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1394..2494
/locus_tag="YPTS_0002"
/db_xref="GeneID:6260507"
CDS 1394..2494
/locus_tag="YPTS_0002"
/EC_number="2.7.7.7"
/note="binds the polymerase to DNA and acts as a sliding
clamp"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_001870458.1"
/db_xref="GI:186893346"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:6260507"
/translation="MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRL
TGTDLEMEMVACVALSQSHEPGATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSG
RSRFSLSTLPAIDFPNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLF
ETEGEELRTVATDGHRLAVCSMPIGQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQI
GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNE
KFRGVRLYVSHNQLKITANNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKCE
DVRLLLTDSVSSVQIEDSASQAAAYVVMPMRL"
misc_feature 1394..2491
/locus_tag="YPTS_0002"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 1394..2488
/locus_tag="YPTS_0002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(1463..1465,1610..1612,1631..1633,1985..1987)
/locus_tag="YPTS_0002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(1613..1615,1622..1624,1700..1702,1706..1708,
2207..2209,2300..2305)
/locus_tag="YPTS_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(1907..1909,1913..1924,2351..2353,2477..2488)
/locus_tag="YPTS_0002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(1907..1909,1913..1918,2132..2134,2237..2239,
2276..2281,2360..2362,2477..2488)
/locus_tag="YPTS_0002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 2667..3752
/gene="recF"
/locus_tag="YPTS_0003"
/db_xref="GeneID:6260508"
CDS 2667..3752
/gene="recF"
/locus_tag="YPTS_0003"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_001870459.1"
/db_xref="GI:186893347"
/db_xref="InterPro:IPR001238"
/db_xref="InterPro:IPR003395"
/db_xref="GeneID:6260508"
/translation="MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVY
TLGHGRAFRSLQAGRVIRHECAEFVLHGRVDANEREASVGLSKSRQGDTKVRIDGTDG
HKVAELAQMLPMQLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQ
RNAALRQVSRYTQIRAWDQEIIPLAERISEWRAAYSDAIAADISATCALFLPEFALSF
FFQRGWDKESDYGELLARQFERDRALTYTAVGPHKADFRIRADGTPVEDLLSRGQLKL
LMCALRLAQGEFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSA
EQVADMVGEKGKMFRVEHGKIEVQPQD"
misc_feature 2667..3734
/gene="recF"
/locus_tag="YPTS_0003"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 2673..>3164
/gene="recF"
/locus_tag="YPTS_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 2754..2777
/gene="recF"
/locus_tag="YPTS_0003"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(2763..2768,2772..2780,3021..3023)
/gene="recF"
/locus_tag="YPTS_0003"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 3012..3023
/gene="recF"
/locus_tag="YPTS_0003"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <3354..3734
/gene="recF"
/locus_tag="YPTS_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 3471..3500
/gene="recF"
/locus_tag="YPTS_0003"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 3558..3575
/gene="recF"
/locus_tag="YPTS_0003"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 3582..3593
/gene="recF"
/locus_tag="YPTS_0003"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 3651..3671
/gene="recF"
/locus_tag="YPTS_0003"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 3772..6186
/gene="gyrB"
/locus_tag="YPTS_0004"
/db_xref="GeneID:6260509"
CDS 3772..6186
/gene="gyrB"
/locus_tag="YPTS_0004"
/EC_number="5.99.1.3"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_001870460.1"
/db_xref="GI:186893348"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:6260509"
/translation="MSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
DNAIDEALAGHCKEILVTIHADNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGG
KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET
EQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKEDHFHY
EGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQR
DGGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSS
QTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMT
RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRT
LLLTFFYRQMPEIIERGHVFIAQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDGAAL
HTNAHAPALAGEPLEKLVAEHYSVQKTIARMERRYPRALLNNLIYQPTLQEEDLGNKE
VVTQWIDSLVVLLNEKEHHGSSYSSVVRENRERQLFEPILRIRTHGVDTDYDLDFDFI
HGGEYRKICLLGDKLRGLIEDGAFVERGERRVPVSSFEEALDWLVKESRRGLAIQRYK
GLGEMNPDQLWETTMDPESRRMLRVMVKDAIAADQLFTTLMGDAVEPRRAFIEENALR
AANIDI"
misc_feature 3772..6183
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 3877..>4026
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 3907..3909
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(3994..3996,4000..4002)
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 4429..4902
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 4582..4584
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(4756..4758,4765..4770,4774..4776)
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(4774..4776,4780..4782)
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 5023..5367
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(5041..5046,5053..5055,5263..5265,5269..5271,
5275..5277)
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(5041..5043,5263..5265)
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 5956..6150
/gene="gyrB"
/locus_tag="YPTS_0004"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 6402..7211
/locus_tag="YPTS_0005"
/db_xref="GeneID:6260510"
CDS 6402..7211
/locus_tag="YPTS_0005"
/note="YidA; catalyzes the dephosphorylation of erythrose
4-phosphate (preferred substrate), mannose 1-phosphate and
p-nitrophenyl phosphate; hydrolyzes the
alpha-D-glucose-1-phosphate but not the beta form; member
of the haloacid dehalogenase-like hydrolases superfamily
and Cof family of proteins"
/codon_start=1
/transl_table=11
/product="sugar phosphatase"
/protein_id="YP_001870461.1"
/db_xref="GI:186893349"
/db_xref="InterPro:IPR000150"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006379"
/db_xref="InterPro:IPR006380"
/db_xref="InterPro:IPR013200"
/db_xref="GeneID:6260510"
/translation="MAIELIAIDMDGTLLNPQHEITPRVKQAIAAARAKGVCVVLATG
RPYIGVQRYLRELNMENSGDYCISNNGALVQKAATGECILQETLSFEDYLYFEALSRE
LGVSFQAFDFNTLYTANKDISKYTLHEVMLTGIPLKYRAVEEMDPTLRFPKVMMIDEP
ERLDRALAMMPAEVFERFTIMKSAPFYLEILSKRVDKGTGVKMLAEHLGIAQKNVMAL
GDQGNDIAMVNYAGVGVAMGNAIPELKEIAQYVTGTNCEDGVATAIEKYIG"
misc_feature 6402..7205
/locus_tag="YPTS_0005"
/note="sugar phosphate phosphatase; Provisional; Region:
PRK10513"
/db_xref="CDD:182509"
misc_feature 6414..>6626
/locus_tag="YPTS_0005"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature order(6426..6434,6528..6533)
/locus_tag="YPTS_0005"
/note="active site"
/db_xref="CDD:119389"
misc_feature 6426..6443
/locus_tag="YPTS_0005"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 6528..6530
/locus_tag="YPTS_0005"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature <6915..7112
/locus_tag="YPTS_0005"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
gene 7824..8339
/locus_tag="YPTS_0006"
/db_xref="GeneID:6260511"
CDS 7824..8339
/locus_tag="YPTS_0006"
/note="KEGG: yps:YPTB3938 IS1661 DNA-binding protein"
/codon_start=1
/transl_table=11
/product="IS1661 DNA-binding protein"
/protein_id="YP_001870462.1"
/db_xref="GI:186893350"
/db_xref="GeneID:6260511"
/translation="MKHPFSTRLAAVQHYLSGKATLRETARQFSVGKSPLTRWIRAFR
RQGEAGLEHHLSRTYTPEFRLCVVRYMMANRCSAADASAHFNIPNETIIQNWMKRYRE
GGKEALNPSKTGPTMPKDKYEHDSKPFSEMTHAELEKELEYLRAENAYLKKRKALREE
KALREQQKKPE"
misc_feature 7824..8150
/locus_tag="YPTS_0006"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG2963"
/db_xref="CDD:32783"
misc_feature 7845..7985
/locus_tag="YPTS_0006"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
misc_feature 8010..8168
/locus_tag="YPTS_0006"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
gene 8393..9178
/locus_tag="YPTS_0007"
/db_xref="GeneID:6260512"
CDS 8393..9178
/locus_tag="YPTS_0007"
/note="PFAM: Integrase catalytic region;
KEGG: ypa:YPA_3353 transposase for insertion sequence
IS1661"
/codon_start=1
/transl_table=11
/product="Integrase catalytic subunit"
/protein_id="YP_001870463.1"
/db_xref="GI:186893351"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:6260512"
/translation="MARSTYYYHASKPDGVIDDYADAVKAIGALSRRHAQRYGYRRMT
VALRKEGFTLNHKTVRKLMNQHGLLSLIRRKKYRSYRADGGRASDNLLARNFTSEISG
LKWCTDVTEFRVGAQKLYLSVIQDLFNNEIISWHMSERAALILTCKTLEKALKVKGRK
EGLMLHSDQGWHYRTPMWRSMLVEAGIRQSMSRKGNCLDNAVMENFFSHLKAEMYHRK
KYDSATVLKRDIVEYIHYYNTERISLKTGGMSPAEYRTQVEKQ"
misc_feature 8393..9151
/locus_tag="YPTS_0007"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature 8465..8620
/locus_tag="YPTS_0007"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature 8702..9034
/locus_tag="YPTS_0007"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 9002..9163
/locus_tag="YPTS_0007"
/note="Integrase core domain; Region: rve_2; pfam13333"
/db_xref="CDD:205513"
gene complement(9117..9338)
/locus_tag="YPTS_0008"
/db_xref="GeneID:6260513"
CDS complement(9117..9338)
/locus_tag="YPTS_0008"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870464.1"
/db_xref="GI:186893352"
/db_xref="GeneID:6260513"
/translation="MPSEGRLSRKRIGPVRQRNDESRDPTQWASDSAKARGSKGATLC
TEPQNLDICFTAFLPESGILPDSFRLFSG"
gene 9737..10966
/locus_tag="YPTS_0009"
/db_xref="GeneID:6260514"
CDS 9737..10966
/locus_tag="YPTS_0009"
/note="PFAM: major facilitator superfamily MFS_1;
KEGG: yps:YPTB3936 multidrug translocase, MFS family"
/codon_start=1
/transl_table=11
/product="major facilitator transporter"
/protein_id="YP_001870465.1"
/db_xref="GI:186893353"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:6260514"
/translation="MQTSFSPATRLGRRALLFPLCLVLFEFAAYIANDMIQPGMLAVV
AEFNASVEWVPTSMTAYLAGGMFLQWLLGPLSDRRGRRPVMLAGVAFFVVTCLAILLV
NSIEQFIAMRFLQGIGLCFIGAVGYATIQESFEEAVCIKITALMANVALIAPLLGPLA
GAALIHVAPWQTMFVLFAVLGAISFAGLWRAMPETASLKGEKLSVANMWRDYKQVLAN
RRFLCGSLALGFASLPLLAWIAQSPVILISGEQLSTFEYGILQVPIFGALIIGNLTLA
RLSGKTSIPQLIRYGAGPMIVGLMIAAGSTLYSSHAYLWMTAGLSLYAFGIGLANAGL
VRLTLFASDISKGTVSAAMGMISMMIFTLGIELAKVAYLWGDSRGFNLFNLMSGLLWL
GLVMVFIRRQPEAVATE"
misc_feature 9749..10963
/locus_tag="YPTS_0009"
/note="multidrug efflux system translocase MdfA;
Provisional; Region: PRK15402"
/db_xref="CDD:185300"
misc_feature 9794..10936
/locus_tag="YPTS_0009"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(9833..9835,9842..9850,9854..9859,9908..9910,
9917..9922,9929..9931,9941..9946,9950..9955,10091..10096,
10103..10108,10115..10120,10127..10129,10163..10168,
10175..10180,10196..10198,10430..10432,10439..10444,
10451..10456,10463..10465,10505..10507,10517..10519,
10529..10531,10538..10540,10550..10552,10712..10714,
10721..10726,10733..10735,10745..10750,10757..10759,
10790..10795,10802..10807,10814..10819,10826..10828)
/locus_tag="YPTS_0009"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(11115..11318)
/locus_tag="YPTS_0010"
/db_xref="GeneID:6260515"
CDS complement(11115..11318)
/locus_tag="YPTS_0010"
/note="KEGG: ypk:y4068 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870466.1"
/db_xref="GI:186893354"
/db_xref="GeneID:6260515"
/translation="MFLDTFSFLRVEPRQMGNGRVGRRANQPVLVNQPFCHLAGQARD
RNSLFDNRPALFLTGNFNEYIDA"
gene 11439..11597
/locus_tag="YPTS_0011"
/db_xref="GeneID:6260516"
CDS 11439..11597
/locus_tag="YPTS_0011"
/note="KEGG: ypp:YPDSF_0045 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870467.1"
/db_xref="GI:186893355"
/db_xref="GeneID:6260516"
/translation="MDIGLSLQERNNKYFYAMAKIEADKLINLSRRVSFNNIKDVFLR
VKFENDIK"
gene 11676..12257
/locus_tag="YPTS_0012"
/db_xref="GeneID:6260517"
CDS 11676..12257
/locus_tag="YPTS_0012"
/note="KEGG: yps:YPTB3935 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870468.1"
/db_xref="GI:186893356"
/db_xref="GeneID:6260517"
/translation="MECYHLSKQDSMLSLKQAKVYISAKIEEHDKVIGYVIDGIAVIV
GGLQMVAGSGILLGSIASGNIVGIIVGAHLILNGASSLSEGVQRLRGNKNATGFMQDA
YMGTAEFFGFERKTGMLAYYAADLTTSFYGVIKLSLKPDAWRLYKYIPSDYYRKINSM
SKLALTIQGVKATNKIRVIGSTYLDDNSEYERK"
misc_feature 11676..12170
/locus_tag="YPTS_0012"
/note="Protein of unknown function (DUF4225); Region:
DUF4225; pfam13988"
/db_xref="CDD:206158"
gene 12526..13713
/locus_tag="YPTS_0013"
/db_xref="GeneID:6260518"
CDS 12526..13713
/locus_tag="YPTS_0013"
/note="PFAM: transposase mutator type;
KEGG: yps:YPTB0012 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase mutator type"
/protein_id="YP_001870469.1"
/db_xref="GI:186893357"
/db_xref="InterPro:IPR001207"
/db_xref="GeneID:6260518"
/translation="MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELT
EHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQ
MDSQILSLYAKSMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALY
PIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTEL
KNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSG
LKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYT
TNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKMEYADPELAVSDEPFYY
RVR"
misc_feature 12589..13662
/locus_tag="YPTS_0013"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3328"
/db_xref="CDD:33137"
misc_feature 13081..13305
/locus_tag="YPTS_0013"
/note="MULE transposase domain; Region: MULE; pfam10551"
/db_xref="CDD:204511"
gene complement(13793..14323)
/locus_tag="YPTS_0014"
/db_xref="GeneID:6260519"
CDS complement(13793..14323)
/locus_tag="YPTS_0014"
/note="in Escherichia coli the MobB protein is not
essential but has been found to interact with multiple
proteins involved in the molybdopterin guanine
dinucleotide cofactor biosynthesis pathway"
/codon_start=1
/transl_table=11
/product="molybdopterin-guanine dinucleotide biosynthesis
protein B"
/protein_id="YP_001870470.1"
/db_xref="GI:186893358"
/db_xref="InterPro:IPR004435"
/db_xref="GeneID:6260519"
/translation="MNYKSPPLLGIAAYSGTGKTTLLKSLIPLLQQRQVRVGLIKHTH
HNMEIDTPGKDSYELRKAGALQTLVASDCRWALMTETPEQQPLNLHYLASRLDASTID
LILVEGFKHEPINKIALYRESIGKPFSGLIDKHVIALASDKPIETTVKQLDINQPEQI
TEFICTWLENISFEVR"
misc_feature complement(13823..14302)
/locus_tag="YPTS_0014"
/note="molybdopterin-guanine dinucleotide biosynthesis
protein MobB; Region: mobB; TIGR00176"
/db_xref="CDD:161745"
misc_feature complement(order(14165..14167,14261..14281))
/locus_tag="YPTS_0014"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206746"
misc_feature complement(14264..14281)
/locus_tag="YPTS_0014"
/note="G1 box; other site"
/db_xref="CDD:206746"
misc_feature complement(order(14192..14194,14195..14203))
/locus_tag="YPTS_0014"
/note="Switch I region; other site"
/db_xref="CDD:206746"
misc_feature complement(14165..14176)
/locus_tag="YPTS_0014"
/note="G3 box; other site"
/db_xref="CDD:206746"
misc_feature complement(14165..14170)
/locus_tag="YPTS_0014"
/note="Switch II region; other site"
/db_xref="CDD:206746"
gene complement(14323..14910)
/gene="mobA"
/locus_tag="YPTS_0015"
/db_xref="GeneID:6260520"
CDS complement(14323..14910)
/gene="mobA"
/locus_tag="YPTS_0015"
/note="in Escherichia coli MobA links a guanosine
5'-phosphate to molydopterin to form molybdopterin guanine
dinucleotide during molybdenum cofactor biosynthesis"
/codon_start=1
/transl_table=11
/product="molybdopterin-guanine dinucleotide biosynthesis
protein MobA"
/protein_id="YP_001870471.1"
/db_xref="GI:186893359"
/db_xref="InterPro:IPR013482"
/db_xref="GeneID:6260520"
/translation="MQPNITGVILAGGRSSRMGGNDKGLIPLNGKPLFQYVIDRFKPQ
VSDLVINANRNQGLYKESGIPVIDDIITGFVGPLAGMHAGLSYASTEWVVFAPCDVPA
LPSDLVSQLWQGKKQALAAYANDDERAHPTFALMHISLKTQLADYLIRGDRKLMLFLD
SINAQRVKFSGKADLFSNLNTPADCDLWEQKRRGQ"
misc_feature complement(14335..14907)
/gene="mobA"
/locus_tag="YPTS_0015"
/note="molybdopterin-guanine dinucleotide biosynthesis
protein MobA; Reviewed; Region: mobA; PRK00317"
/db_xref="CDD:178976"
misc_feature complement(14356..14898)
/gene="mobA"
/locus_tag="YPTS_0015"
/note="MobA catalyzes the formation of molybdopterin
guanine dinucleotide; Region: MobA; cd02503"
/db_xref="CDD:133000"
misc_feature complement(order(14614..14616,14620..14622,14671..14673,
14680..14685,14704..14706,14758..14760,14842..14844,
14869..14871,14875..14883))
/gene="mobA"
/locus_tag="YPTS_0015"
/note="GTP binding site; other site"
/db_xref="CDD:133000"
gene 15064..15333
/locus_tag="YPTS_0016"
/db_xref="GeneID:6260521"
CDS 15064..15333
/locus_tag="YPTS_0016"
/note="PFAM: protein of unknown function DUF1040;
KEGG: ypi:YpsIP31758_0018 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870472.1"
/db_xref="GI:186893360"
/db_xref="InterPro:IPR009383"
/db_xref="GeneID:6260521"
/translation="MKCHRVNELIELLHPAWQQEPDLNLVQFLQKLAAEAGFKGDFSD
LTDDVLIYHLKMRGAASTEVIPGLKKDYEEDFKTALLRARGIIKD"
misc_feature 15064..15321
/locus_tag="YPTS_0016"
/note="Protein of unknown function (DUF1040); Region:
DUF1040; pfam06288"
/db_xref="CDD:148100"
gene 15424..16410
/locus_tag="YPTS_0017"
/db_xref="GeneID:6260522"
CDS 15424..16410
/locus_tag="YPTS_0017"
/note="catalyzes the phosphorylation of protein substrates
at serine and threonine residues in vitro; specific
substrate in vivo has not been identified yet; plays a
role in long-term cell survival and expression of surface
appendages"
/codon_start=1
/transl_table=11
/product="serine/threonine protein kinase"
/protein_id="YP_001870473.1"
/db_xref="GI:186893361"
/db_xref="InterPro:IPR002575"
/db_xref="GeneID:6260522"
/translation="MNNSAFNFQTLSPDLIMDALEGAGLRVDSGLTALNSYENRVYQF
MDEESKRYVVKFYRPERWSSEQITEEHQFSLDLAESEIPVIAPLRLNGKTLHTHCGFF
FAVFPSVGGRQYEIDNLDQLEWVGRFLGRIHQAARNSLFVARPTMGIEEYLTEPRQLL
ANCDLVPVKQRDKFLAAADLLITTIKQYWHTEWQPLRLHGDCHPGNILWRDGPMFVDL
DDARNGPAIQDLWMLLHGDRRDQSMQLDILLEAYSEFADFDQRELALIEPLRAMRMVY
YLAWVARRWQDPAFPKSFPWMAESDFWLQQTASFTEQVKLLQEPPLQLMPMY"
misc_feature 15424..16368
/locus_tag="YPTS_0017"
/note="serine/threonine protein kinase; Provisional;
Region: PRK11768"
/db_xref="CDD:183305"
misc_feature 15532..16212
/locus_tag="YPTS_0017"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:201896"
misc_feature order(15544..15546,15580..15582,15586..15588,15676..15678,
15739..15750,16024..16026,16036..16041,16045..16047,
16069..16074)
/locus_tag="YPTS_0017"
/note="active site"
/db_xref="CDD:88612"
misc_feature order(15544..15546,15580..15582,15586..15588,15676..15678,
15739..15750,16024..16026,16036..16041,16045..16047,
16069..16074)
/locus_tag="YPTS_0017"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88612"
gene 16438..17061
/locus_tag="YPTS_0018"
/db_xref="GeneID:6260523"
CDS 16438..17061
/locus_tag="YPTS_0018"
/note="PFAM: DSBA oxidoreductase;
KEGG: ypi:YpsIP31758_0020 thiol:disulfide interchange
protein DsbA"
/codon_start=1
/transl_table=11
/product="protein disulfide isomerase I"
/protein_id="YP_001870474.1"
/db_xref="GI:186893362"
/db_xref="InterPro:IPR001853"
/db_xref="InterPro:IPR006662"
/db_xref="GeneID:6260523"
/translation="MKNVWLALVGIVMAFSVTAAQFTDGKQYLTLDKPVTGEPQVLEF
FSFYCPHCYQFEEVYQVPKAVKKALPEGTKMTRYHVEFLGPLGKQLTQAWAVAMALGV
EEKITPLMFEGVQKTQTVQTPGDIRNVFIKAGISGEDYDAALNSFVVKSLVAQQQKAA
EDLQLRGVPAMFVNGKYMIKNDGMDTSSMDNYVKQYADVVTFLLTQK"
misc_feature 16507..17037
/locus_tag="YPTS_0018"
/note="DsbA family, DsbA subfamily; DsbA is a monomeric
thiol disulfide oxidoreductase protein containing a redox
active CXXC motif imbedded in a TRX fold. It is involved
in the oxidative protein folding pathway in prokaryotes,
and is the strongest thiol...; Region: DsbA_DsbA; cd03019"
/db_xref="CDD:48568"
misc_feature 16555..16995
/locus_tag="YPTS_0018"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:201729"
misc_feature order(16582..16584,16588..16593,16942..16944)
/locus_tag="YPTS_0018"
/note="catalytic residues [active]"
/db_xref="CDD:48568"
misc_feature 16681..16689
/locus_tag="YPTS_0018"
/note="hinge region; other site"
/db_xref="CDD:48568"
misc_feature order(16702..16728,16741..16800,16807..16833,16849..16878)
/locus_tag="YPTS_0018"
/note="alpha helical domain; other site"
/db_xref="CDD:48568"
gene 17552..20350
/locus_tag="YPTS_0019"
/db_xref="GeneID:6260524"
CDS 17552..20350
/locus_tag="YPTS_0019"
/EC_number="2.7.7.7"
/note="has 3'-5' exonuclease, 5'-3' exonuclease and
5'-3'polymerase activities, primarily functions to fill
gaps during DNA replication and repair"
/codon_start=1
/transl_table=11
/product="DNA polymerase I"
/protein_id="YP_001870475.1"
/db_xref="GI:186893363"
/db_xref="InterPro:IPR001098"
/db_xref="InterPro:IPR002298"
/db_xref="InterPro:IPR002421"
/db_xref="InterPro:IPR002562"
/db_xref="InterPro:IPR008918"
/db_xref="GeneID:6260524"
/translation="MAQIAENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLN
MLRSLLLQYRPSHVAVVFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAM
GLPLLVVSGVEADDVIGTLAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTIL
GPQDVCDKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNL
DKISTLTFRGAKTMSAKLEQNKDVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLH
QLFSRYEFKRWLADVEAGKWLDSKKDRPTGQTSSQSFVAADTAPTAEVTAVLSQENYQ
TILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDY
LDAPPQLDRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARYGIDLKGIAFDTMLESY
VLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVT
LQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRL
DELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDY
PLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGRLSSRDPNLQNI
PVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRAT
AAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERY
PGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAA
DIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEKSMQL
AVPLKVDVGVGANWDQAH"
misc_feature 17567..20347
/locus_tag="YPTS_0019"
/note="DNA polymerase I; Provisional; Region: PRK05755"
/db_xref="CDD:180237"
misc_feature 17576..>17986
/locus_tag="YPTS_0019"
/note="PIN domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: PIN_53EXO; cd09859"
/db_xref="CDD:189029"
misc_feature order(17588..17590,17738..17740,17888..17890,17894..17899,
17963..17965,17969..17971)
/locus_tag="YPTS_0019"
/note="active site"
/db_xref="CDD:189029"
misc_feature order(17588..17590,17894..17896,17963..17965)
/locus_tag="YPTS_0019"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 17756..17794
/locus_tag="YPTS_0019"
/note="putative 5' ssDNA interaction site; other site"
/db_xref="CDD:189029"
misc_feature order(17888..17890,17897..17899)
/locus_tag="YPTS_0019"
/note="metal binding site 3; metal-binding site"
/db_xref="CDD:189029"
misc_feature order(17963..17965,17969..17971)
/locus_tag="YPTS_0019"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 18068..18307
/locus_tag="YPTS_0019"
/note="H3TH domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: H3TH_53EXO; cd09898"
/db_xref="CDD:188618"
misc_feature order(18098..18121,18125..18154,18158..18169)
/locus_tag="YPTS_0019"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:188618"
misc_feature order(18104..18106,18113..18115)
/locus_tag="YPTS_0019"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:188618"
misc_feature 18593..19177
/locus_tag="YPTS_0019"
/note="DEDDy 3'-5' exonuclease domain of Escherichia coli
DNA polymerase I and similar bacterial family-A DNA
polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139"
/db_xref="CDD:176651"
misc_feature order(18623..18634,18641..18643,18815..18820,18824..18832,
18929..18934,18977..18982,19049..19051,19061..19063)
/locus_tag="YPTS_0019"
/note="active site"
/db_xref="CDD:176651"
misc_feature order(18623..18625,18629..18631,18830..18832,19049..19051,
19061..19063)
/locus_tag="YPTS_0019"
/note="catalytic site [active]"
/db_xref="CDD:176651"
misc_feature order(18626..18634,18641..18643,18815..18820,18824..18829,
18929..18934,18977..18982,19049..19051,19061..19063)
/locus_tag="YPTS_0019"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176651"
misc_feature 19202..20338
/locus_tag="YPTS_0019"
/note="Polymerase I functions primarily to fill DNA gaps
that arise during DNA repair, recombination and
replication; Region: DNA_pol_A_pol_I_C; cd08637"
/db_xref="CDD:176474"
misc_feature order(19451..19453,19463..19465,19472..19477,19550..19558,
19562..19564,19568..19579,19673..19678,19760..19762,
19820..19822,19832..19834,20084..20086,20105..20107,
20201..20209)
/locus_tag="YPTS_0019"
/note="active site"
/db_xref="CDD:176474"
misc_feature order(19451..19453,19463..19465,19472..19477,19550..19558,
19562..19564,19568..19579,19856..19858,20081..20086,
20093..20095,20105..20107,20201..20209)
/locus_tag="YPTS_0019"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176474"
misc_feature order(19673..19678,19682..19684,19760..19762,19820..19822,
19832..19834,20207..20209)
/locus_tag="YPTS_0019"
/note="catalytic site [active]"
/db_xref="CDD:176474"
gene complement(20758..21408)
/gene="engB"
/locus_tag="YPTS_0020"
/db_xref="GeneID:6260525"
CDS complement(20758..21408)
/gene="engB"
/locus_tag="YPTS_0020"
/note="binds guanine nucleotides; in Escherichia coli
depletion results in defective cell division and
filamentation; in Bacillus subtilis this gene is
essential"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTP-binding protein YsxC"
/protein_id="YP_001870476.1"
/db_xref="GI:186893364"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR005289"
/db_xref="GeneID:6260525"
/translation="MTIRNYNYHMTHFVISAPDIRHLPRDEGIEVAFAGRSNAGKSSA
LNTLTNQKGLARTSKTPGRTQLINLFEVVDGVRLVDLPGYGYAEVPEEMKLKWQRALG
EYLQKRNCLKGLVVLMDIRHPLKDLDQQMITWAVAVGTPVLLLLTKADKLASGARKAQ
LNLVREAIIPFMGDIQVEAFSSLKKIGVDKLREKLDTWFSEIPPEVMAEEFDGEGE"
misc_feature complement(20800..21390)
/gene="engB"
/locus_tag="YPTS_0020"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature complement(20812..21321)
/gene="engB"
/locus_tag="YPTS_0020"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature complement(21283..21306)
/gene="engB"
/locus_tag="YPTS_0020"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(20863..20868,20959..20961,20965..20967,
21169..21171,21217..21225,21232..21240,21280..21300))
/gene="engB"
/locus_tag="YPTS_0020"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature complement(21208..21228)
/gene="engB"
/locus_tag="YPTS_0020"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature complement(21217..21219)
/gene="engB"
/locus_tag="YPTS_0020"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature complement(21160..21171)
/gene="engB"
/locus_tag="YPTS_0020"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(21076..21081,21088..21132,21151..21162))
/gene="engB"
/locus_tag="YPTS_0020"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature complement(20959..20970)
/gene="engB"
/locus_tag="YPTS_0020"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature complement(20860..20868)
/gene="engB"
/locus_tag="YPTS_0020"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene 22153..22719
/locus_tag="YPTS_0021"
/db_xref="GeneID:6260526"
CDS 22153..22719
/locus_tag="YPTS_0021"
/note="PFAM: protein of unknown function DUF414;
KEGG: ypi:YpsIP31758_0023 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870477.1"
/db_xref="GI:186893365"
/db_xref="InterPro:IPR007336"
/db_xref="GeneID:6260526"
/translation="MKQPNKAPRANIAAPKGTATPKRRRKTRDELDAEARDRKRQKKH
SGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPLVIESQVKAKSMPKPVEKNVVK
PRLTPEEELAKLENDERLDALLDRLDNDEVLNKEDQAYVDLTLDRIDALMEQLGIELG
DDEDDVEREEKQEDILQLLKRGNPKDTF"
misc_feature 22174..22716
/locus_tag="YPTS_0021"
/note="Der GTPase activator; Provisional; Region:
PRK05244"
/db_xref="CDD:179970"
gene 22906..24279
/locus_tag="YPTS_0022"
/db_xref="GeneID:6260527"
CDS 22906..24279
/locus_tag="YPTS_0022"
/EC_number="1.3.99.22"
/note="catalyzes the oxygen-independent formation of
protoporphyrinogen-IX from coproporphyrinogen-III"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_001870478.1"
/db_xref="GI:186893366"
/db_xref="InterPro:IPR004558"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR010723"
/db_xref="GeneID:6260527"
/translation="MSEHAIVWDLSLIQKYNYSGPRYTSYPTALEFSEDYNESAFQQA
VKRYPQRPLSLYVHIPFCHKLCYFCGCNKLVTRQQHKADEYLVVLEKEIRQRAALFTG
RQVSQMHWGGGTPTYLNKTQISHLMTVLREHFDFLPDAEQSIEVDPREIELDVLDHLR
AEGFNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFNSTNIDLIYGLPKQT
PESFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTIRF
LTESGYQFIGMDHFARPDDELAIAQQEGTLHRNFQGYTTQGESDLLGLGVSAISMLGD
SYAQNEKDLETYYACVEQRGNALWRGLTMTEDDCLRRDVIKTLICHFQLSYQPIEQRY
GIRFADYFAEDFELLAPFEQDGLVERNETGLRVTPRGRLLIRNICMCFDIYLRKQARK
QQFSRVI"
misc_feature 22918..24276
/locus_tag="YPTS_0022"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK09249"
/db_xref="CDD:181727"
misc_feature 23089..23646
/locus_tag="YPTS_0022"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(23089..23091,23095..23097,23101..23103,23107..23115,
23236..23238,23242..23247,23338..23346,23413..23415,
23536..23538,23626..23631)
/locus_tag="YPTS_0022"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 23992..24198
/locus_tag="YPTS_0022"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(24333..25745)
/gene="glnG"
/locus_tag="YPTS_0023"
/db_xref="GeneID:6260528"
CDS complement(24333..25745)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="response regulator of a two-component regulatory
system involved in the activation of nitrogen assimilation
genes; interacts with sigma-54"
/codon_start=1
/transl_table=11
/product="nitrogen regulation protein NR(I)"
/protein_id="YP_001870479.1"
/db_xref="GI:186893367"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR010114"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:6260528"
/translation="MQRGIVWIVDDDSSIRWVLERALTGAGLNCVAFDSGNQVLDALA
TRTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL
PKPFDIDEAVALVERAISHYQEQQQPARSQPVSGPTADIIGEAPAMQDVFRIIGRLSR
SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF
TGANQVRQGRFEQADTGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVR
IIAATHQNLELRVQEGKFREDLFHRLNVIRVHLPPLRERSEDIPRLARYFLHVAAKEL
GVESKNLHPETEAALTRLPWPGNVRQLENTCRWLTVMAAGQEVLVQDLPSELFETHMP
DASGQRAPDSWSTLLAQWADRALRSGHQDLLSEAQPEMERTLLTTALRHTQGHKQEAA
RLLGWGRNTLTRKLKELGME"
misc_feature complement(24336..25745)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="nitrogen regulation protein NR(I); Provisional;
Region: glnG; PRK10923"
/db_xref="CDD:182842"
misc_feature complement(25389..25724)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(25431..25436,25443..25445,25500..25502,
25560..25562,25584..25586,25713..25718))
/gene="glnG"
/locus_tag="YPTS_0023"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(25584..25586)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(25560..25568,25572..25577))
/gene="glnG"
/locus_tag="YPTS_0023"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(25428..25436)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(24813..25241)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(25218..25241)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(24900..24902,25026..25028,25215..25238))
/gene="glnG"
/locus_tag="YPTS_0023"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(25023..25040)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(24843..24845)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(24345..24464)
/gene="glnG"
/locus_tag="YPTS_0023"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene complement(25753..26802)
/gene="glnL"
/locus_tag="YPTS_0024"
/db_xref="GeneID:6260529"
CDS complement(25753..26802)
/gene="glnL"
/locus_tag="YPTS_0024"
/note="sensory histidine kinase in two-component
regulatory system with GlnG; acts as a signal transducer
which responds to the nitrogen level of cell and modulates
the activity of ntrC by phosphorylation/dephosphorylation"
/codon_start=1
/transl_table=11
/product="nitrogen regulation protein NR(II)"
/protein_id="YP_001870480.1"
/db_xref="GI:186893368"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:6260529"
/translation="MATGTLPDAGQILNTLINSILLLDDDLAIHYANPAAQQLLAQSS
RKLFGTPLPDLLGYFSLNIVLMRESLQAGQGFTDNEVTLVVDGRAHILSLTAQSLAEG
FILLELAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLAKALP
DPALLEYTQVIIEQADRLRNLVDRLLGPQRPGQHITQSIHQVAERVCQLVSLEKPDNV
TLIRDYDPSLPELAHDPDQIEQVLLNITRNALQALGETGGTITLRTRTAFQVTLHGMR
YRLAARIDIEDDGPGVPTQLQDTVFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFNS
WPGHTEFSVYLPIRQ"
misc_feature complement(25759..26802)
/gene="glnL"
/locus_tag="YPTS_0024"
/note="nitrogen regulation protein NR(II); Provisional;
Region: glnL; PRK11073"
/db_xref="CDD:182947"
misc_feature complement(26245..26412)
/gene="glnL"
/locus_tag="YPTS_0024"
/note="His Kinase A (phospho-acceptor) domain; Region:
HisKA; pfam00512"
/db_xref="CDD:201275"
misc_feature complement(order(26248..26250,26260..26262,26269..26271,
26281..26283,26290..26292,26302..26304,26350..26352,
26359..26361,26371..26373,26380..26382,26392..26394,
26404..26406))
/gene="glnL"
/locus_tag="YPTS_0024"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(26386..26388)
/gene="glnL"
/locus_tag="YPTS_0024"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(25768..26091)
/gene="glnL"
/locus_tag="YPTS_0024"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(25780..25782,25786..25788,25801..25803,
25807..25809,25855..25866,25927..25932,25936..25938,
25942..25944,25948..25950,26050..26052,26059..26061,
26071..26073))
/gene="glnL"
/locus_tag="YPTS_0024"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(26059..26061)
/gene="glnL"
/locus_tag="YPTS_0024"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(25858..25860,25864..25866,25930..25932,
25936..25938))
/gene="glnL"
/locus_tag="YPTS_0024"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(27055..28464)
/gene="glnA"
/locus_tag="YPTS_0025"
/db_xref="GeneID:6260530"
CDS complement(27055..28464)
/gene="glnA"
/locus_tag="YPTS_0025"
/note="forms a homododecamer; forms glutamine from ammonia
and glutamate with the conversion of ATP to ADP and
phosphate; also functions in the assimilation of ammonia;
highly regulated protein controlled by the
addition/removal of adenylyl groups by adenylyltransferase
from specific tyrosine residues; addition of adenylyl
groups results in inactivation of the enzyme"
/codon_start=1
/transl_table=11
/product="glutamine synthetase"
/protein_id="YP_001870481.1"
/db_xref="GI:186893369"
/db_xref="InterPro:IPR001637"
/db_xref="InterPro:IPR004809"
/db_xref="InterPro:IPR008146"
/db_xref="InterPro:IPR008147"
/db_xref="GeneID:6260530"
/translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHITIPAHQVNADFF
EEGKMFDGSSIGGWKGINESDMVLMPDASTAVMDPFFADSTLIIRCDILEPGTMQGYD
RDPRSISKRAEDFLKSSGIADTVLFGPEPEFFLFDDIRFGSSINGSHVSIDDVEGAWN
SSTKYEGGNKGHRPAVKGGYFPVPPVDSAQDLRSAMCLTMEEMGLVVEAHHHEVATAG
QNEVATRFNTMTKKADEIQIYKYVVHNVAHAFGKTATFMPKPMFGDNGSGMHCHMSLS
KNGNNLFAGDKYGGLSEIALFYIGGIIKHAKAINALANPTTNSYKRLVPGYEAPVMLA
YSARNRSASIRIPVVASPKARRIEARFPDPAANPYLCFAALLMAGLDGIINKIHPGDA
MDKNLYDLPPEEEAEIPKVAGSLDEAMAALNEDREFLTRGGVFTDDAIDAYIELRREE
MDRVRMTPHPVEFELYYSV"
misc_feature complement(27058..28464)
/gene="glnA"
/locus_tag="YPTS_0025"
/note="glutamine synthetase; Provisional; Region: glnA;
PRK09469"
/db_xref="CDD:181884"
misc_feature complement(28180..28425)
/gene="glnA"
/locus_tag="YPTS_0025"
/note="Glutamine synthetase, beta-Grasp domain; Region:
Gln-synt_N; pfam03951"
/db_xref="CDD:202826"
misc_feature complement(27328..28161)
/gene="glnA"
/locus_tag="YPTS_0025"
/note="Glutamine synthetase, catalytic domain; Region:
Gln-synt_C; pfam00120"
/db_xref="CDD:201016"
gene 29027..30850
/locus_tag="YPTS_0026"
/db_xref="GeneID:6260531"
CDS 29027..30850
/locus_tag="YPTS_0026"
/note="TIGRFAM: small GTP-binding protein; GTP-binding
protein TypA;
PFAM: elongation factor G domain protein; protein
synthesis factor GTP-binding; elongation factor Tu domain
2 protein;
KEGG: ypi:YpsIP31758_0028 GTP-binding protein TypA/BipA"
/codon_start=1
/transl_table=11
/product="GTP-binding protein TypA"
/protein_id="YP_001870482.1"
/db_xref="GI:186893370"
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006298"
/db_xref="GeneID:6260531"
/translation="MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTFGERTEATERVMD
SNDLEKERGITILAKNTAINWKDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAM
DGPMPQTRFVTKKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF
PIIYASALMGIAGEDHNDMAEDMTPLYQAIIDHVPAPDVDSSGPLQMQISQLDYNNYV
GVIGIGRIKRGIVKPNQQVTVIDSEGKTRNGKVGKVLGHMGLERIETTQAEAGDIVAI
TGLGELNISDTICDVNAVEALPPLSVDEPTVTMYFCVNTSPFCGKEGKYVTSRQILDR
LNKELIHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVINRII
DGRNQEPFESVTLDIEEQHQGAVMQAMGERKGDVKDMIPDGKGRIRLDYMIPSRGLIG
FRTEFMTMTSGTGLLYSTFSHYDDVRPGDIGQRQNGVLISNGQGKAVAFALYKLQDRG
KLFIGHGTEVYEGQIIGIHSRSNDLTVNCLTGKQLTNMRASGTDEATTLVPFLKKTLE
QALEFIDDDELVEVTPQSIRIRKRHLTENDRKRAGRGPREG"
misc_feature 29027..30844
/locus_tag="YPTS_0026"
/note="GTP-binding protein; Provisional; Region: PRK10218"
/db_xref="CDD:104396"
misc_feature 29036..29617
/locus_tag="YPTS_0026"
/note="Tyrosine phosphorylated protein A (TypA)/BipA
family belongs to ribosome-binding GTPases; Region:
TypA_BipA; cd01891"
/db_xref="CDD:206678"
misc_feature 29060..29083
/locus_tag="YPTS_0026"
/note="G1 box; other site"
/db_xref="CDD:206678"
misc_feature order(29063..29065,29069..29071,29081..29086,29093..29095,
29102..29107,29201..29206,29258..29263,29330..29335,
29441..29443,29453..29455)
/locus_tag="YPTS_0026"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206678"
misc_feature order(29069..29086,29408..29413,29417..29419,29522..29530)
/locus_tag="YPTS_0026"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206678"
misc_feature 29168..29203
/locus_tag="YPTS_0026"
/note="Switch I region; other site"
/db_xref="CDD:206678"
misc_feature 29189..29191
/locus_tag="YPTS_0026"
/note="G2 box; other site"
/db_xref="CDD:206678"
misc_feature 29246..29257
/locus_tag="YPTS_0026"
/note="G3 box; other site"
/db_xref="CDD:206678"
misc_feature 29252..29308
/locus_tag="YPTS_0026"
/note="Switch II region; other site"
/db_xref="CDD:206678"
misc_feature 29408..29419
/locus_tag="YPTS_0026"
/note="G4 box; other site"
/db_xref="CDD:206678"
misc_feature 29522..29530
/locus_tag="YPTS_0026"
/note="G5 box; other site"
/db_xref="CDD:206678"
misc_feature 29639..29896
/locus_tag="YPTS_0026"
/note="BipA_TypA_II: domain II of BipA (also called TypA)
having homology to domain II of the elongation factors
(EFs) EF-G and EF-Tu. BipA is a highly conserved protein
with global regulatory properties in Escherichia coli.
BipA is phosphorylated on a...; Region: BipA_TypA_II;
cd03691"
/db_xref="CDD:58082"
misc_feature 30218..30454
/locus_tag="YPTS_0026"
/note="BipA_TypA_C: a C-terminal portion of BipA or TypA
having homology to the C terminal domains of the
elongation factors EF-G and EF-2. A member of the ribosome
binding GTPase superfamily, BipA is widely distributed in
bacteria and plants. BipA is a highly...; Region:
BipA_TypA_C; cd03710"
/db_xref="CDD:58063"
gene 31172..31762
/locus_tag="YPTS_0027"
/db_xref="GeneID:6260532"
CDS 31172..31762
/locus_tag="YPTS_0027"
/note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA,
variant 3;
PFAM: Haloacid dehalogenase domain protein hydrolase;
KEGG: yps:YPTB0026 phosphatase"
/codon_start=1
/transl_table=11
/product="phosphatase"
/protein_id="YP_001870483.1"
/db_xref="GI:186893371"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006402"
/db_xref="GeneID:6260532"
/translation="MLYIFDLGNVIVDIDFKRVLGVWSKLSSVPLATLNERFTMGEVF
QQHERGEISDEDFAHQLSDEMGISLSFEQFAEGWQAIFVALRPEVIDIMNKLRREGNR
VVVLSNTNRLHCYYWPEHYPEVAAAADHMYLSQDLGMRKPEARIYQHVLNAENVPAEQ
AVFFDDVEANVLAAKAVGINAIHVTDRQIIPTYFSL"
misc_feature 31181..31723
/locus_tag="YPTS_0027"
/note="haloacid dehalogenase superfamily, subfamily IA,
variant 3 with third motif having DD or ED; Region:
HAD-SF-IA-v3; TIGR01509"
/db_xref="CDD:213634"
misc_feature 31424..31723
/locus_tag="YPTS_0027"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 31490..31492
/locus_tag="YPTS_0027"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 31859..32743
/gene="rbn"
/locus_tag="YPTS_0028"
/db_xref="GeneID:6260533"
CDS 31859..32743
/gene="rbn"
/locus_tag="YPTS_0028"
/note="RNase BN; required for 3' maturation of certain
phage T4-encoded tRNAs; forms a dimer; specific for
immature tRNA substrates containing incorrect residues
within the universal CCA sequence; 3' to 5'
exoribonuclease"
/codon_start=1
/transl_table=11
/product="ribonuclease BN"
/protein_id="YP_001870484.1"
/db_xref="GI:186893372"
/db_xref="InterPro:IPR004664"
/db_xref="GeneID:6260533"
/translation="MASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSL
LSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFIPATGDIIQNYLEQFVANSNRMT
VVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVI
SSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALV
AALLFELGKKGFAMYITLFPSYQLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGE
YRAERHHAKSVITQSPEM"
misc_feature 31883..32737
/gene="rbn"
/locus_tag="YPTS_0028"
/note="hypothetical protein; Reviewed; Region: PRK01637"
/db_xref="CDD:179313"
gene 32750..33187
/locus_tag="YPTS_0029"
/db_xref="GeneID:6260534"
CDS 32750..33187
/locus_tag="YPTS_0029"
/note="hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and
free tRNA(Tyr); possible defense mechanism against a
harmful effect of D-tyrosine"
/codon_start=1
/transl_table=11
/product="D-tyrosyl-tRNA(Tyr) deacylase"
/protein_id="YP_001870485.1"
/db_xref="GI:186893373"
/db_xref="InterPro:IPR003732"
/db_xref="GeneID:6260534"
/translation="MIALIQRALSASVVVEGNIVGEIGPGLLVLLGVEQGDTEQKAQR
LCERVLGYRIFSDENDKMNLNVQQAGGSVLVVSQFTLVADTQKGMRPSFSRGAIPQEA
DRLYQYFVAQCRERGVKTETGLFAADMKVSLVNDGPVTFWLQV"
misc_feature 32750..33184
/locus_tag="YPTS_0029"
/note="D-Tyrosyl-tRNAtyr deacylases; a class of
tRNA-dependent hydrolases which are capable of hydrolyzing
the ester bond of D-Tyrosyl-tRNA reducing the level of
cellular D-Tyrosine while recycling the peptidyl-tRNA;
found in bacteria and in eukaryotes but not...; Region:
Dtyr_deacylase; cd00563"
/db_xref="CDD:29648"
misc_feature order(32768..32770,32978..32992,33026..33028,33170..33172)
/locus_tag="YPTS_0029"
/note="putative active site [active]"
/db_xref="CDD:29648"
misc_feature order(32879..32881,32888..32896,32900..32911,32978..32983,
32987..32992,32996..33004,33008..33022,33026..33028,
33128..33181)
/locus_tag="YPTS_0029"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29648"
misc_feature order(32891..32893,32906..32908,33008..33010,33017..33019)
/locus_tag="YPTS_0029"
/note="putative tRNAtyr binding site [nucleotide binding];
other site"
/db_xref="CDD:29648"
gene 33373..34296
/locus_tag="YPTS_0030"
/db_xref="GeneID:6260535"
CDS 33373..34296
/locus_tag="YPTS_0030"
/note="TIGRFAM: thioesterase domain protein;
PFAM: GCN5-related N-acetyltransferase; Thioesterase
putative;
KEGG: ypi:YpsIP31758_0032 acetyltransferase, GNAT
family/thioesterase domain"
/codon_start=1
/transl_table=11
/product="thioesterase domain-containing protein"
/protein_id="YP_001870486.1"
/db_xref="GI:186893374"
/db_xref="InterPro:IPR000182"
/db_xref="InterPro:IPR012660"
/db_xref="GeneID:6260535"
/translation="MYHLRVPITEQELKDYYQFRWEMLRKPLHQPIGSEKDAYDAMAH
HQMVVDEQGKAVAIGRLYINADNEAAIRFLAVAPSVRNKGLGTLVAMTLESVARQEGV
KRVVCSAREDAVDFFAKLGFVCQGEITAPQTTPVRHFLMIKPVATMDDILHRPDWCGQ
LQQAWYDHIPLSEKMGVRISQYTGQRFVTTMPEAGNQNPHHTLFAGSLFSLATLTGWG
LIWLLLRERHLGGTIILADAHIRYSAPVTGRPRAVAELSSLSGDLDRLARGRRARVQL
NVNLFGDENQGAVFEGTYMVLPVAAGDDMAN"
misc_feature 33514..33696
/locus_tag="YPTS_0030"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(33592..33600,33628..33633)
/locus_tag="YPTS_0030"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
misc_feature 33844..34266
/locus_tag="YPTS_0030"
/note="Putative thioesterase (yiiD_Cterm); Region:
YiiD_Cterm; pfam09500"
/db_xref="CDD:192308"
gene complement(34431..36140)
/locus_tag="YPTS_0031"
/db_xref="GeneID:6260536"
CDS complement(34431..36140)
/locus_tag="YPTS_0031"
/note="PFAM: AsmA family protein;
KEGG: yps:YPTB0030 possible exported protein"
/codon_start=1
/transl_table=11
/product="AsmA family protein"
/protein_id="YP_001870487.1"
/db_xref="GI:186893375"
/db_xref="InterPro:IPR007844"
/db_xref="GeneID:6260536"
/translation="MKFLGKTLLTLLLLFALSIVLCYAVLQTSWAAGWLSRWVSNNSG
YHLSLRGIDHRWSQPGQISFSDVTLARADQPPFLTAQQVIFGLSWRQLTDPKHFLSLQ
LQNGSLTLNNSTPSLPLQADTLQLTDMTLNTTVESKNATSQWKIAGQHVNGGLVPWQQ
IPGNSFGENTQFHFSAGFLTINDISAQQIYLQGSIQKDILTLTNFGANIAQGELTGNA
RQSADGSWLVDRLRLSNIRLQTTASLEDVWNNVLQLPPITLKRFDLIDARVEGKGWAV
NDVDLTLKNITFKQGDWQSDDGELVFNASDIIKGNIHLIDPIATFTLSPEGVAINQFT
TRWQDGLLRTLGSWSRATHRLQLGELTVVALVYTLPNDWKQLWQQTLPDWLSEVYVGK
LSANRNLLIDISPDFPFQITSLDAAGSNLLLAKNHQWGVWSGSLVLNAGNATFNKNDI
RRPSLALNANEQQITFSDLSAFTKEGLLEATASIDQTPDRALSLALTGRSVDLNFLHN
WGWPALPLQGLGNLKLQIKGNLTADAPLKPTLNGSLQAIDSNGQQINQTVLHGVVQGT
AEQ"
misc_feature complement(34485..36074)
/locus_tag="YPTS_0031"
/note="AsmA family; Region: AsmA; pfam05170"
/db_xref="CDD:147383"
misc_feature complement(<34485..34781)
/locus_tag="YPTS_0031"
/note="AsmA-like C-terminal region; Region: AsmA_2;
cl15864"
/db_xref="CDD:210264"
gene complement(36287..37705)
/locus_tag="YPTS_0032"
/db_xref="GeneID:6260537"
CDS complement(36287..37705)
/locus_tag="YPTS_0032"
/note="TIGRFAM: uracil-xanthine permease; xanthine
permease;
PFAM: Xanthine/uracil/vitamin C permease;
KEGG: ypp:YPDSF_3871 membrane permease"
/codon_start=1
/transl_table=11
/product="uracil-xanthine permease"
/protein_id="YP_001870488.1"
/db_xref="GI:186893376"
/db_xref="InterPro:IPR006042"
/db_xref="InterPro:IPR006043"
/db_xref="GeneID:6260537"
/translation="MPPLPIWKYHAMSTQSAELDTAQPSPARPSELIYHLEDRPPLPQ
TLFAACQHLLAMFVAVITPGLLICQALGLPAEDTQRIISMSLFASGLASLLQIKTWGP
VGSGLLSIQGTSFNFVSPLIMGGLALKNGGADIPTMMAALFGTLMVASCTEILLSRVL
HLARRIITPLVSGIVVMIIGLSLIQVGLTSIGGGYGAMSDNTFGAPKNLLLAGAVLGV
IILLNRQRNPYLRVASLVIAMAVGYLLAWALGMLPESRPVVDTALITIPTPLYYGLSF
DWNLLIPLMLIFMVTSLETIGDITATSDVSEQPVRGPLYMKRLKGGVLANGLNSMLSA
IFNTFPNSCFGQNNGVIQLTGVASRYVGFVVAIMLIILGLFPAVAGFVQHIPEPVLGG
ATLVMFGTIAASGVRIVSRETLNRRAIMIMALSLAVGMGVAQQPLILQFAPDWIKTLF
SSGIAAGGITAIVLNLLFPQEK"
misc_feature complement(36305..37591)
/locus_tag="YPTS_0032"
/note="uracil-xanthine permease; Region: ncs2; TIGR00801"
/db_xref="CDD:200049"
gene 37910..39124
/locus_tag="YPTS_0033"
/db_xref="GeneID:6260538"
CDS 37910..39124
/locus_tag="YPTS_0033"
/note="PFAM: sodium/glutamate symporter;
KEGG: ypi:YpsIP31758_0036 sodium/glutamate symporter"
/codon_start=1
/transl_table=11
/product="sodium/glutamate symporter"
/protein_id="YP_001870489.1"
/db_xref="GI:186893377"
/db_xref="InterPro:IPR004445"
/db_xref="GeneID:6260538"
/translation="MFHLDTYGTLVAACLVLLLGRKLVQTVPFLKKYTIPEPVAGGLL
VAFMMLLVQKTLGWEVSFDMSLKDPLMLAFFATIGLNANLASLRAGGKALSIFVFIVV
GLLLVQNTIGIVLAKLMGLDPLMGLLAGSITLSGGHGTGAAWSKLFSERYGFENATEV
AMACATFGLVLGGLIGGPVARYLVKHSSTPEGTPDDSAVPSAFEKPSAGRMITSLVLI
ETIAMISICLMAGNLIAGWLQGTMFELPIFVCVLFVGVILSNTLSASGFYRVFDRAVS
VLGNVSLSLFLAMALMSLKLWELASLALPMLVILSVQALAMALYAIFVTYRIMGKNYD
AAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHLAFLVVPMVGAFFIDIVNAIVIKL
YLLLPIFPAVTG"
misc_feature 37913..39103
/locus_tag="YPTS_0033"
/note="sodium--glutamate symport carrier (gltS); Region:
gltS; TIGR00210"
/db_xref="CDD:129314"
gene complement(39490..41571)
/locus_tag="YPTS_0034"
/db_xref="GeneID:6260539"
CDS complement(39490..41571)
/locus_tag="YPTS_0034"
/note="catalyzes branch migration in Holliday junction
intermediates"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecG"
/protein_id="YP_001870490.1"
/db_xref="GI:186893378"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004609"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:6260539"
/translation="MKGRLLDAVPLSTLSGVGASQAGKLAKIGLETIQDLLLHLPLRY
EDRTRLYRIGDLLPGLSVTVEGEVLRSDISFGRRRMMTCQISDGSGVLTLRFFNFNAA
MKNSLSVGKHVIAYGEAKRGNNGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQ
ATLRKLIDQALAMLDTCVIAELLPIELSRSLISLPEAIHTLHRPPADIQLADLEQGKH
PAQRRLIMEELLAHNLSMLAVRAGAQSYRALPLMAEEQLKQRFLAALPFTPTQAQQRV
VAEIERDMTQSFPMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA
TTFRQWLEPLGFSVGWLAGKQKGKARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLA
LVIIDEQHRFGVHQRLTLWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRSDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTC
EELKIALPEIKVGLVHGRMKGPEKQAIMLAFKQGELQLLVATTVIEVGVDVPNASLMI
IDNPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQ
RDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMIPEVQRVARHLHQQYPEHAKALIER
WLPERVRYTNA"
misc_feature complement(39493..41571)
/locus_tag="YPTS_0034"
/note="ATP-dependent DNA helicase RecG; Provisional;
Region: PRK10917"
/db_xref="CDD:182836"
misc_feature complement(41167..41385)
/locus_tag="YPTS_0034"
/note="RecG_wedge_OBF: A subfamily of OB folds
corresponding to the OB fold found in the N-terminal
(wedge) domain of Escherichia coli RecG. RecG is a
branched-DNA-specific helicase, which catalyzes the
interconversion of a DNA replication fork to a...; Region:
RecG_wedge_OBF; cd04488"
/db_xref="CDD:72960"
misc_feature complement(order(41167..41169,41224..41226,41230..41232,
41236..41238,41383..41385))
/locus_tag="YPTS_0034"
/note="generic binding surface II; other site"
/db_xref="CDD:72960"
misc_feature complement(order(41188..41190,41266..41268,41281..41283,
41332..41334))
/locus_tag="YPTS_0034"
/note="ssDNA binding site; other site"
/db_xref="CDD:72960"
misc_feature complement(40282..40698)
/locus_tag="YPTS_0034"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(40663..40677)
/locus_tag="YPTS_0034"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(40372..40383)
/locus_tag="YPTS_0034"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(39781..>40053)
/locus_tag="YPTS_0034"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(39916..39924,39997..40002))
/locus_tag="YPTS_0034"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(39811..39813,39820..39822,39832..39834,
39898..39900))
/locus_tag="YPTS_0034"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(41572..42231)
/locus_tag="YPTS_0035"
/db_xref="GeneID:6260540"
CDS complement(41572..42231)
/locus_tag="YPTS_0035"
/EC_number="2.1.1.34"
/note="specifically modifies tRNA at position G18"
/codon_start=1
/transl_table=11
/product="tRNA guanosine-2'-O-methyltransferase"
/protein_id="YP_001870491.1"
/db_xref="GI:186893379"
/db_xref="InterPro:IPR001537"
/db_xref="GeneID:6260540"
/translation="MLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTT
QMYTRLSAAAGSNSWVQVKTHPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRP
TCILMGQEKTGISPEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMY
KRTHSVLAESEQQRLLFEGGYPVLAHVAKRKGLPQPHIDEQGQIIADAQWWSAMQATE
S"
misc_feature complement(41578..42231)
/locus_tag="YPTS_0035"
/note="tRNA guanosine-2'-O-methyltransferase; Provisional;
Region: PRK11081"
/db_xref="CDD:182949"
misc_feature complement(41788..42210)
/locus_tag="YPTS_0035"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:201328"
misc_feature complement(41602..41778)
/locus_tag="YPTS_0035"
/note="SpoU, rRNA methylase, C-terminal; Region:
SpoU_methylas_C; pfam12105"
/db_xref="CDD:152540"
gene complement(42270..44378)
/locus_tag="YPTS_0036"
/db_xref="GeneID:6260541"
CDS complement(42270..44378)
/locus_tag="YPTS_0036"
/EC_number="3.1.7.2"
/note="KEGG: ypi:YpsIP31758_0039
guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase;
TIGRFAM: RelA/SpoT family protein;
PFAM: TGS domain protein; metal-dependent phosphohydrolase
HD sub domain; RelA/SpoT domain protein;
SMART: metal-dependent phosphohydrolase HD region"
/codon_start=1
/transl_table=11
/product="bifunctional (p)ppGpp synthetase II/
guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase"
/protein_id="YP_001870492.1"
/db_xref="GI:186893380"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR004095"
/db_xref="InterPro:IPR004811"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR007685"
/db_xref="GeneID:6260541"
/translation="MYLFESLNLLIQRYLPEEQIKRLKQAYLVARDAHEGQTRSSGEP
YITHPVAVACILAEMRLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK
LDKLNFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR
ETLEIYSPLAHRLGIHHLKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILA
EIEGRLTEAGIPCRVSGREKHLYSIYCKMHLKEQRFHSIMDIYAFRVIVKEVDTCYRV
LGQAHSLYKPRPGRVKDYIAIPKANGYQSLHTSLIGPHGVPVEVQIRTEDMDQMAEMG
VAAHWAYKEQGESGTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT
PEGRIVELPAGATPVDFAYVVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDESVSLGRRLLNHALGNGRKLSDISEENI
KHELDRMKLATVDDLLAEIGLGNAMSVVVAKNLLGDPSTLGTSASGTRKLPIKGADGV
LITFAKCCRPIPGDPIIAHISPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDQETEQE
FIAEIKVDMFNQQGALANLTAAINAAESNIQSLNTEEKDGRVYSAFIRLTTRNRVHLA
NIMRKIRIMPDVVKVSRNRN"
misc_feature complement(42273..44378)
/locus_tag="YPTS_0036"
/note="bifunctional (p)ppGpp synthetase II/
guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase;
Provisional; Region: PRK11092"
/db_xref="CDD:182957"
misc_feature complement(43881..44252)
/locus_tag="YPTS_0036"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature complement(order(43962..43964,44160..44165,44235..44237))
/locus_tag="YPTS_0036"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature complement(44160..44162)
/locus_tag="YPTS_0036"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature complement(43380..43739)
/locus_tag="YPTS_0036"
/note="Nucleotidyltransferase (NT) domain of RelA- and
SpoT-like ppGpp synthetases and hydrolases; Region:
NT_Rel-Spo_like; cd05399"
/db_xref="CDD:143389"
misc_feature complement(order(43383..43388,43410..43412,43416..43418,
43422..43424,43458..43460,43470..43472,43476..43478,
43482..43484,43497..43499,43503..43505,43587..43589,
43599..43604,43665..43667,43671..43673))
/locus_tag="YPTS_0036"
/note="synthetase active site [active]"
/db_xref="CDD:143389"
misc_feature complement(order(43386..43388,43416..43418,43422..43424,
43458..43460,43470..43472,43476..43478,43482..43484,
43497..43499,43503..43505,43671..43673))
/locus_tag="YPTS_0036"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143389"
misc_feature complement(order(43422..43424,43602..43604))
/locus_tag="YPTS_0036"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143389"
misc_feature complement(43038..43217)
/locus_tag="YPTS_0036"
/note="TGS_RelA_SpoT: The RelA (SpoT) protein, also
referred to as ppGpp hydrolase/synthetase, is a
ribosome-associated protein that is activated during amino
acid starvation and thought to mediate the stringent
response. RelA contains a TGS domain, named after...;
Region: TGS_RelA_SpoT; cd01668"
/db_xref="CDD:133438"
misc_feature complement(42282..42494)
/locus_tag="YPTS_0036"
/note="ACT domain found C-terminal of the RelA/SpoT
domains; Region: ACT_RelA-SpoT; cd04876"
/db_xref="CDD:153148"
gene complement(44398..44673)
/gene="rpoZ"
/locus_tag="YPTS_0037"
/db_xref="GeneID:6260542"
CDS complement(44398..44673)
/gene="rpoZ"
/locus_tag="YPTS_0037"
/note="promotes RNA polymerase assembly or stability;
latches the N- and C-terminal regions of the beta' subunit
thereby facilitating its interaction with the beta and
alpha subunits"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit omega"
/protein_id="YP_001870493.1"
/db_xref="GI:186893381"
/db_xref="InterPro:IPR003716"
/db_xref="InterPro:IPR006110"
/db_xref="GeneID:6260542"
/translation="MARVTVQDAVEKIGNRFDLVLVAARRARQIQSGGKDALVPEEND
KVTVIALREIEEGLITNQILDVRERQEQQEQEAAEIQAVTAIAEGRR"
misc_feature complement(44479..44673)
/gene="rpoZ"
/locus_tag="YPTS_0037"
/note="DNA-directed RNA polymerase subunit omega;
Reviewed; Region: rpoZ; PRK00392"
/db_xref="CDD:178998"
gene complement(44728..45351)
/gene="gmk"
/locus_tag="YPTS_0038"
/db_xref="GeneID:6260543"
CDS complement(44728..45351)
/gene="gmk"
/locus_tag="YPTS_0038"
/EC_number="2.7.4.8"
/note="Essential for recycling GMP and indirectly, cGMP"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_001870494.1"
/db_xref="GI:186893382"
/db_xref="InterPro:IPR008144"
/db_xref="InterPro:IPR008145"
/db_xref="GeneID:6260543"
/translation="MVQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSISHTTRAK
RPGENHGEHYFFVSEKEFCQMIDDDAFLEHAKVFENYYGTSRLAIEQVLATGVDVFLD
IDWQGAQQIRAKMPTARSIFILPPSKTELDRRLRGRGQDSEEVIAKRMEQAVAEMAHY
AEYDYLIVNDDFNLALSDLKTIIRAERLRLGRQKQRHDALISKLLAD"
misc_feature complement(44782..45351)
/gene="gmk"
/locus_tag="YPTS_0038"
/note="Guanylate kinase [Nucleotide transport and
metabolism]; Region: Gmk; COG0194"
/db_xref="CDD:30543"
misc_feature complement(44812..45336)
/gene="gmk"
/locus_tag="YPTS_0038"
/note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine triphosphate
(ATP) to guanosine monophosphate (GMP) to yield adenosine
diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
/db_xref="CDD:73180"
misc_feature complement(order(45106..45108,45121..45123,45190..45192,
45217..45219,45226..45228,45247..45249,45301..45303,
45319..45321))
/gene="gmk"
/locus_tag="YPTS_0038"
/note="catalytic site [active]"
/db_xref="CDD:73180"
misc_feature complement(order(45301..45303,45319..45321))
/gene="gmk"
/locus_tag="YPTS_0038"
/note="G-X2-G-X-G-K; other site"
/db_xref="CDD:73180"
gene 45752..47455
/gene="ligB"
/locus_tag="YPTS_0039"
/db_xref="GeneID:6260544"
CDS 45752..47455
/gene="ligB"
/locus_tag="YPTS_0039"
/EC_number="6.5.1.2"
/note="this ligase is similar to LigA but it lacks the
C-terminal BRCT domain; catalyzes strand joining of nicked
DNA in the presence of a divalent cation and NAD+"
/codon_start=1
/transl_table=11
/product="NAD-dependent DNA ligase LigB"
/protein_id="YP_001870495.1"
/db_xref="GI:186893383"
/db_xref="InterPro:IPR004150"
/db_xref="InterPro:IPR013839"
/db_xref="InterPro:IPR013840"
/db_xref="GeneID:6260544"
/translation="MNILNLKIIMFLLISNIIVVGGAWATSTCPDWPATRIAVEINAL
EQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQPIPGKGQFLHP
VAHTGLKKLKDETALTRWMAGRKNLWVQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQ
NWTEKAPFISAIPQYIANAPALLTLQGELFLLMDGHQQAKSGGVNARSTVAGALMRKS
PSPLLAQVGVFIWAWPDGPTTMKEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQFWF
QAPLPFVTDGVVVRQEEEPAGRYWQATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGK
GTVVLEVLPIKIDDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRV
HQRNTITAPNWDKFHQLSCFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQKLI
HHELINDLVGWLLLTPEQIASIPGIGNARAEKIYQQFQRAKQQPFSRWLLALGFPQVV
SVDAQWQVVLRRSLSEWATMAGIGQMRAKQIKHFLDHPDVQALADFLSTQKVVGFELT
E"
misc_feature 45767..47446
/gene="ligB"
/locus_tag="YPTS_0039"
/note="NAD-dependent DNA ligase LigB; Reviewed; Region:
ligB; PRK08097"
/db_xref="CDD:181228"
misc_feature 45869..46696
/gene="ligB"
/locus_tag="YPTS_0039"
/note="NAD+ dependent DNA ligase adenylation domain. DNA
ligases catalyze the crucial step of joining the breaks in
duplex DNA during DNA replication, repair and
recombination, utilizing either ATP or NAD(+) as a
cofactor, but using the same basic reaction...; Region:
LIGANc; cd00114"
/db_xref="CDD:29013"
misc_feature order(46073..46075,46139..46141,46145..46147,46208..46210,
46313..46315,46442..46444,46613..46615,46619..46621)
/gene="ligB"
/locus_tag="YPTS_0039"
/note="nucleotide binding pocket [chemical binding]; other
site"
/db_xref="CDD:29013"
misc_feature order(46145..46147,46151..46156)
/gene="ligB"
/locus_tag="YPTS_0039"
/note="K-X-D-G motif; other site"
/db_xref="CDD:29013"
misc_feature 46145..46147
/gene="ligB"
/locus_tag="YPTS_0039"
/note="catalytic site [active]"
/db_xref="CDD:29013"
misc_feature 46706..46921
/gene="ligB"
/locus_tag="YPTS_0039"
/note="NAD-dependent DNA ligase OB-fold domain; Region:
DNA_ligase_OB; pfam03120"
/db_xref="CDD:145978"
gene complement(47475..48092)
/locus_tag="YPTS_0040"
/db_xref="GeneID:6260545"
CDS complement(47475..48092)
/locus_tag="YPTS_0040"
/note="PFAM: protein of unknown function UPF0126;
KEGG: yps:YPTB0039 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870496.1"
/db_xref="GI:186893384"
/db_xref="InterPro:IPR005115"
/db_xref="GeneID:6260545"
/translation="MLLSVLYIIGITAEAMTGALAAGRRQMDMFGVIIIASATAIGGG
SVRDMLLGHYPLGWVKHPEYIVIVAIAAIVTTWMAPLMKQLRHLFLVLNAIGLIVFSI
IGAQIALDMGHSTIIAAIAAVITGVFGGVLRDMLCNCIPLVFQKEIYAGISFAAAWIY
IALQYTPLSHNWVIIITLITGLSARLLALRFRLGLPVFKYEHSDH"
misc_feature complement(47478..48092)
/locus_tag="YPTS_0040"
/note="Predicted membrane protein [Function unknown];
Region: COG2860"
/db_xref="CDD:32687"
misc_feature complement(<47901..48086)
/locus_tag="YPTS_0040"
/note="UPF0126 domain; Region: UPF0126; pfam03458"
/db_xref="CDD:202644"
misc_feature complement(47601..47828)
/locus_tag="YPTS_0040"
/note="UPF0126 domain; Region: UPF0126; pfam03458"
/db_xref="CDD:202644"
gene complement(48435..48527)
/locus_tag="YPTS_0041"
/db_xref="GeneID:6260546"
CDS complement(48435..48527)
/locus_tag="YPTS_0041"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870497.1"
/db_xref="GI:186893385"
/db_xref="GeneID:6260546"
/translation="MMIDSYAELFLSKAKDTAKELQFVYHGVMT"
gene complement(48613..49476)
/locus_tag="YPTS_0042"
/db_xref="GeneID:6260547"
CDS complement(48613..49476)
/locus_tag="YPTS_0042"
/note="PFAM: YicC domain protein; domain of unknown
function DUF1732;
KEGG: ypi:YpsIP31758_0055 conserved hypothetical protein
TIGR00255"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870498.1"
/db_xref="GI:186893386"
/db_xref="InterPro:IPR005229"
/db_xref="InterPro:IPR013527"
/db_xref="InterPro:IPR013551"
/db_xref="GeneID:6260547"
/translation="MIRSMTAYARRDIKGEWGNAAWELRSVNQRYLETYIRLPEQFRS
LEPVIRERIRSRLTRGKIECHLRFELDANAQSSLILNEKLAKQLVEAGNWVKMQSDEG
EINPVDILRWPGVMSAEEQDLDAISTELMQALDTALDDFIVSRETEGAALKTLIEQRL
EGVSAEVVKVRAHMPNILQWQRERLLNKLEEAQVQLENTRLEQELVLMAQRIDVAEEL
DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLI
EQMREQIQNIE"
misc_feature complement(48616..49476)
/locus_tag="YPTS_0042"
/note="hypothetical protein; Provisional; Region:
PRK11820"
/db_xref="CDD:183325"
misc_feature complement(49015..49473)
/locus_tag="YPTS_0042"
/note="YicC-like family, N-terminal region; Region:
YicC_N; pfam03755"
/db_xref="CDD:146410"
misc_feature complement(48616..48873)
/locus_tag="YPTS_0042"
/note="Domain of unknown function (DUF1732); Region:
DUF1732; pfam08340"
/db_xref="CDD:149411"
gene 49603..50319
/gene="rph"
/locus_tag="YPTS_0043"
/db_xref="GeneID:6260548"
CDS 49603..50319
/gene="rph"
/locus_tag="YPTS_0043"
/EC_number="2.7.7.56"
/note="RNase PH; tRNA nucleotidyltransferase; forms
hexamers in Bacillus subtilis; phosphoroltic 3'-5'
exoribonuclease; involved in maturation of tRNA precursors
and removes terminal nucleotides near CCA acceptor arms of
mature tRNAs"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="YP_001870499.1"
/db_xref="GI:186893387"
/db_xref="InterPro:IPR001247"
/db_xref="InterPro:IPR002381"
/db_xref="InterPro:IPR015847"
/db_xref="GeneID:6260548"
/translation="MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVE
EGVPRFLKGQGQGWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAV
DLKKLGEFTITLDCDVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVA
AVSVGIVKGEALCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALL
DLARGGIETIFQAQKAALES"
misc_feature 49603..50313
/gene="rph"
/locus_tag="YPTS_0043"
/note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
/db_xref="CDD:178914"
misc_feature 49630..50310
/gene="rph"
/locus_tag="YPTS_0043"
/note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
/db_xref="CDD:206767"
misc_feature order(49660..49674,49702..49704,49708..49710,49714..49716,
49720..49722,49726..49728,49786..49788,49792..49794,
49798..49815,49819..49821,49828..49833,49855..49860,
49864..49869,49876..49878,49888..49890,49897..49899,
49939..49941,49945..49947,49951..49953,49957..49965,
50188..50202,50206..50208,50212..50229,50233..50235,
50242..50247,50254..50259,50266..50268)
/gene="rph"
/locus_tag="YPTS_0043"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:206767"
misc_feature order(49795..49797,49858..49860,49963..49980,50140..50142,
50158..50160)
/gene="rph"
/locus_tag="YPTS_0043"
/note="active site"
/db_xref="CDD:206767"
gene 50486..51133
/gene="pyrE"
/locus_tag="YPTS_0044"
/db_xref="GeneID:6260549"
CDS 50486..51133
/gene="pyrE"
/locus_tag="YPTS_0044"
/EC_number="2.4.2.10"
/note="involved in fifth step of pyrimidine biosynthesis;
converts orotidine 5'-phosphate and diphosphate to orotate
and 5-phospho-alpha-D-ribose 1-diphosphate"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase"
/protein_id="YP_001870500.1"
/db_xref="GI:186893388"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR002375"
/db_xref="InterPro:IPR004467"
/db_xref="GeneID:6260549"
/translation="MKAYQREFIEFALNKQVLKFGEFTLKSGRISPYFFNAGLFNTGL
DLAKLGRFYAAALMDCGVEFDLLFGPAYKGIPIATTTAVALAEHHERDVPYCFNRKEA
KTHGEGGNLVGSPLQGRVMLVDDVITAGTAIRESMEIINAQGATLAGVMISLDRQERG
RGEISAIQEVERDYHCKVIAIVTLNDVIRYLEDKPEMAEHLVAVRQYREQYGVTL"
misc_feature 50630..50983
/gene="pyrE"
/locus_tag="YPTS_0044"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(50696..50698,50702..50704,50855..50863,50867..50881,
50951..50953)
/gene="pyrE"
/locus_tag="YPTS_0044"
/note="active site"
/db_xref="CDD:206754"
gene complement(51268..51864)
/gene="slmA"
/locus_tag="YPTS_0045"
/db_xref="GeneID:6260550"
CDS complement(51268..51864)
/gene="slmA"
/locus_tag="YPTS_0045"
/note="FtsZ binding protein; synthetically lethal with a
defect in the Min system; this protein is the first
identified nucleoid occlusion factor which works along
with the Min system to properly position the FtsZ ring
assembly"
/codon_start=1
/transl_table=11
/product="nucleoid occlusion protein"
/protein_id="YP_001870501.1"
/db_xref="GI:186893389"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:6260550"
/translation="MAEKENTKRNRREEILQALAQMLESSDGSQRITTAKLAANVGVS
EAALYRHFPSKTRMFDSLIEFIEDSLMSRINLILQDEKETFNRLRLILLLVLGFAERN
PGLTRIMTGHALMFEQDRLQGRINQLFERIEMQLRQVLREKKLRDGQGFIHDEALLAT
QLLAFCEGMLSRFVRSEFRYCPTQEFDSRWPLIVAQLQ"
misc_feature complement(51280..51822)
/gene="slmA"
/locus_tag="YPTS_0045"
/note="division inhibitor protein; Provisional; Region:
slmA; PRK09480"
/db_xref="CDD:181894"
misc_feature complement(51679..51822)
/gene="slmA"
/locus_tag="YPTS_0045"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(51986..52444)
/gene="dut"
/locus_tag="YPTS_0046"
/db_xref="GeneID:6260551"
CDS complement(51986..52444)
/gene="dut"
/locus_tag="YPTS_0046"
/EC_number="3.6.1.23"
/note="catalyzes the formation of dUMP from dUTP"
/codon_start=1
/transl_table=11
/product="deoxyuridine 5'-triphosphate
nucleotidohydrolase"
/protein_id="YP_001870502.1"
/db_xref="GI:186893390"
/db_xref="InterPro:IPR003232"
/db_xref="InterPro:IPR008180"
/db_xref="InterPro:IPR008181"
/db_xref="GeneID:6260551"
/translation="MMKKIDIKILDPRVGNEFPLPTYATEGSAGLDLRACLDHAVELQ
PGQTTLLPTGLAIHIGDSALAAVILPRSGLGHKHGIVLGNLVGLIDSDYQGQLMVSVW
NRGQQPFTIEPGERIAQMVFVPVVQAEFNLVEDFTDSERGTGGFGHSGRQ"
misc_feature complement(52079..52360)
/gene="dut"
/locus_tag="YPTS_0046"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature complement(order(52088..52090,52100..52102,52109..52123,
52133..52135,52139..52141,52145..52147,52151..52153,
52172..52174,52181..52183,52199..52207,52223..52240,
52244..52246,52295..52297,52301..52306,52319..52321,
52355..52360))
/gene="dut"
/locus_tag="YPTS_0046"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature complement(order(52151..52156,52166..52168,52175..52183,
52226..52234))
/gene="dut"
/locus_tag="YPTS_0046"
/note="active site"
/db_xref="CDD:143638"
gene complement(52422..53636)
/locus_tag="YPTS_0047"
/db_xref="GeneID:6260552"
CDS complement(52422..53636)
/locus_tag="YPTS_0047"
/EC_number="4.1.1.36"
/EC_number="6.3.2.5"
/note="catalyzes the conjugation of cysteine to
4'-phosphopantothenate to form
4-phosphopantothenoylcysteine, which is then
decarboxylated to form 4'-phosphopantotheine"
/codon_start=1
/transl_table=11
/product="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase"
/protein_id="YP_001870503.2"
/db_xref="GI:229597242"
/db_xref="InterPro:IPR003382"
/db_xref="InterPro:IPR005252"
/db_xref="InterPro:IPR007085"
/db_xref="GeneID:6260552"
/translation="MTGLSGKHIVLGISGGIAAYKSPELVRRLRDKGADVRVVMTHAA
KAFIAPLTLQAVSGYPVSDDLLDPAAEAAMGHIELGKWADLVIIAPATADLLARMAAG
MANDLLTTVCLATAAPIAAVPAMNQQMYRAPATQENLQTLSKWGVLLWGPDSGSQACG
DIGPGRMLDPQEIVALAYNHFSAKQDLQHLSVMITAGPTREPLDPVRFISNQSSGKMG
FAIAQALAARGSNVTLIAGPVNLSTPEGVKRIDVITALEMQQAVQKIAQQQNIFISCA
AVADYRAEHVSDEKIKKQGDEITLKLVKNPDIVAGVASMAKNRPFVVGFAAETQNVEE
YARQKLARKNLDLICANDVSLAEHGFNSDTNALHLFWSTGEKRLPLSDKYLLSQRLID
EIVSRYDEKNRH"
misc_feature complement(52437..53636)
/locus_tag="YPTS_0047"
/note="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated;
Region: PRK05579"
/db_xref="CDD:180143"
misc_feature complement(53232..53618)
/locus_tag="YPTS_0047"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
misc_feature complement(52527..53078)
/locus_tag="YPTS_0047"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:202899"
gene 53833..54501
/gene="radC"
/locus_tag="YPTS_0048"
/db_xref="GeneID:6260553"
CDS 53833..54501
/gene="radC"
/locus_tag="YPTS_0048"
/note="Involved in DNA double-strand break repair and
recombination. Promotes the annealing of complementary
single-stranded DNA and by simulation of RAD51
recombinase"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadC"
/protein_id="YP_001870504.1"
/db_xref="GI:186893392"
/db_xref="InterPro:IPR001405"
/db_xref="GeneID:6260553"
/translation="MDEWYGQVAPREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMKM
AEYLIETFGSLHGLISADYQTLCAHKGIGASKYSQIQAIGELACRCFSSHLMRESVLL
NPGITQKFLQNILSHREREIFLVVFLDNQHRVIRHEEMFTGTISSVEVHPREIVREAL
KVNAAALILAHNHPSGKAEPSQADRLITTQVIKACSLLDIRVLDHLVVGRGECVSFAE
RGWL"
misc_feature 53833..54498
/gene="radC"
/locus_tag="YPTS_0048"
/note="hypothetical protein; Reviewed; Region: PRK00024"
/db_xref="CDD:178801"
misc_feature 54157..54483
/gene="radC"
/locus_tag="YPTS_0048"
/note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466;
cd08071"
/db_xref="CDD:163702"
misc_feature order(54193..54195,54343..54345,54349..54351,54373..54375,
54382..54384)
/gene="radC"
/locus_tag="YPTS_0048"
/note="MPN+ (JAMM) motif; other site"
/db_xref="CDD:163702"
misc_feature order(54343..54345,54349..54351,54382..54384)
/gene="radC"
/locus_tag="YPTS_0048"
/note="Zinc-binding site [ion binding]; other site"
/db_xref="CDD:163702"
gene 54764..55000
/gene="rpmB"
/locus_tag="YPTS_0049"
/db_xref="GeneID:6260554"
CDS 54764..55000
/gene="rpmB"
/locus_tag="YPTS_0049"
/note="required for 70S ribosome assembly"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="YP_001870505.1"
/db_xref="GI:186893393"
/db_xref="InterPro:IPR001383"
/db_xref="GeneID:6260554"
/translation="MSRVCQVTGKRPMSGNNRSHAMNATKRRFLPNLHSHRFWVEGEK
RFVTLRVSAKGMRVIDKKGIETVLAEIRARGEKY"
misc_feature 54764..54991
/gene="rpmB"
/locus_tag="YPTS_0049"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:178987"
gene 55012..55179
/gene="rpmG"
/locus_tag="YPTS_0050"
/db_xref="GeneID:6260555"
CDS 55012..55179
/gene="rpmG"
/locus_tag="YPTS_0050"
/note="in Escherichia coli BM108, a mutation that results
in lack of L33 synthesis had no effect on ribosome
synthesis or function; there are paralogous genes in
several bacterial genomes, and a CXXC motif for zinc
binding and an upstream regulation region of the paralog
lacking this motif that are regulated by zinc similar to
other ribosomal proteins like L31; the proteins in this
group lack the CXXC motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="YP_001870506.1"
/db_xref="GI:186893394"
/db_xref="InterPro:IPR001705"
/db_xref="GeneID:6260555"
/translation="MAKGVREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR
QHVLYKEAKIK"
misc_feature 55012..55170
/gene="rpmG"
/locus_tag="YPTS_0050"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00595"
/db_xref="CDD:179075"
gene 55262..56071
/locus_tag="YPTS_0051"
/db_xref="GeneID:6260556"
CDS 55262..56071
/locus_tag="YPTS_0051"
/EC_number="3.2.2.23"
/note="Involved in base excision repair of DNA damaged by
oxidation or by mutagenic agents. Acts as DNA glycosylase
that recognizes and removes damaged bases"
/codon_start=1
/transl_table=11
/product="formamidopyrimidine-DNA glycosylase"
/protein_id="YP_001870507.1"
/db_xref="GI:186893395"
/db_xref="InterPro:IPR000191"
/db_xref="InterPro:IPR000214"
/db_xref="InterPro:IPR010663"
/db_xref="InterPro:IPR012319"
/db_xref="InterPro:IPR015886"
/db_xref="InterPro:IPR015887"
/db_xref="GeneID:6260556"
/translation="MPELPEVETSRRGIEPYLVGQTILYAVVRNARLRWPVSDEILTL
SDQPVLSVQRRAKYLLLELPKGWIIIHLGMSGSLRVLSEETAAEKHDHVDLVVSNGKI
LRYTDPRRFGAWLWAKDLETSNVLAHLGPEPLSDEFTAQYLFDKSRNKRTLIKPWLMD
NKVVVGVGNIYASESLFAAGILPDRAAGSLTDAESVLLVATIKAVLLHSIEQGGTTLR
DFLQSDGKPGYFAQELQVYGRAGEPCRQCGHPIEIAKHGQRSTFFCRHCQH"
misc_feature 55262..56068
/locus_tag="YPTS_0051"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:179222"
misc_feature 55265..55609
/locus_tag="YPTS_0051"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature order(55265..55270,55430..55432,55472..55474,55478..55486,
55526..55531,55583..55594)
/locus_tag="YPTS_0051"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature 55265..55267
/locus_tag="YPTS_0051"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature order(55268..55279,55283..55288,55295..55297,55421..55432,
55484..55486)
/locus_tag="YPTS_0051"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature order(55268..55270,55430..55432)
/locus_tag="YPTS_0051"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature 55472..55474
/locus_tag="YPTS_0051"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature order(55481..55483,55586..55588,55592..55594)
/locus_tag="YPTS_0051"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature 55484..55486
/locus_tag="YPTS_0051"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature order(55529..55531,55589..55591)
/locus_tag="YPTS_0051"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature 55646..55921
/locus_tag="YPTS_0051"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
misc_feature 55982..56068
/locus_tag="YPTS_0051"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene complement(56077..56556)
/gene="coaD"
/locus_tag="YPTS_0052"
/db_xref="GeneID:6260557"
CDS complement(56077..56556)
/gene="coaD"
/locus_tag="YPTS_0052"
/EC_number="2.7.7.3"
/note="Catalyzes the conversion of ATP and pantetheine
4'-phosphate to diphosphate and 3'-dephospho-coA"
/codon_start=1
/transl_table=11
/product="phosphopantetheine adenylyltransferase"
/protein_id="YP_001870508.1"
/db_xref="GI:186893396"
/db_xref="InterPro:IPR001980"
/db_xref="InterPro:IPR004820"
/db_xref="InterPro:IPR004821"
/db_xref="GeneID:6260557"
/translation="MITKAIYPGTFDPITNGHLDLVTRASAMFSHVILAIADSSSKKP
MFTLDERVALAKKVTAPLKNVEVLGFSELMAEFAKKHNANILVRGLRSVSDFEYEWQL
ANMNRHLMPKLESVFLMPSEKWSFISSSLVKEVARHGGDITPFLPKPVTKALLAKLA"
misc_feature complement(56080..56550)
/gene="coaD"
/locus_tag="YPTS_0052"
/note="phosphopantetheine adenylyltransferase;
Provisional; Region: coaD; PRK00168"
/db_xref="CDD:178911"
misc_feature complement(56089..56547)
/gene="coaD"
/locus_tag="YPTS_0052"
/note="Phosphopantetheine adenylyltransferase; Region:
PPAT; cd02163"
/db_xref="CDD:173914"
misc_feature complement(order(56176..56178,56185..56187,56197..56199,
56239..56241,56251..56253,56260..56265,56284..56286,
56290..56295,56335..56343,56431..56433,56446..56448,
56494..56496,56503..56508,56524..56538))
/gene="coaD"
/locus_tag="YPTS_0052"
/note="active site"
/db_xref="CDD:173914"
misc_feature complement(56503..56514)
/gene="coaD"
/locus_tag="YPTS_0052"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:173914"
gene complement(56553..57335)
/locus_tag="YPTS_0053"
/db_xref="GeneID:6260558"
CDS complement(56553..57335)
/locus_tag="YPTS_0053"
/note="PFAM: glycosyl transferase family 2;
KEGG: ypi:YpsIP31758_0066 glycosyl transferase, group 2
family protein"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_001870509.1"
/db_xref="GI:186893397"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:6260558"
/translation="MGTKKRLSVVMITKNEASLLTDCLASVAWADEIIVLDSGSEDET
RALAQQFGAKVYSNINWPGYGKQRQLAQQYASGDYILMLDADERVTPELKIAIESVLL
APEEGAVYSCSRRNLFLGRFMRHSGWYPDRVTRLYPHHQYRYNDNLVHESLDSGSAKV
IPLAGDLLHLTCRDFFAFQRKQLSYAEAWAIQRHQQGKSCSYFAILSHTLGAFSKTWL
LRAGFLDGKQGLLLAVVNAQYTFNKYAALWALSHQYQKSEKS"
misc_feature complement(56580..57326)
/locus_tag="YPTS_0053"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:30811"
misc_feature complement(56637..57320)
/locus_tag="YPTS_0053"
/note="UDP-glucose LOS-beta-1,4 glucosyltransferase is
required for biosynthesis of lipooligosaccharide; Region:
Beta4Glucosyltransferase; cd02511"
/db_xref="CDD:133005"
misc_feature complement(order(57078..57080,57084..57086))
/locus_tag="YPTS_0053"
/note="putative metal binding site; other site"
/db_xref="CDD:133005"
gene complement(57336..58655)
/locus_tag="YPTS_0054"
/db_xref="GeneID:6260559"
CDS complement(57336..58655)
/locus_tag="YPTS_0054"
/note="catalyzes the transfer of
2-keto-3-deoxy-D-manno-octulosonic acid to lipid A"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_001870510.1"
/db_xref="GI:186893398"
/db_xref="InterPro:IPR001296"
/db_xref="InterPro:IPR007507"
/db_xref="GeneID:6260559"
/translation="MVLFLIIHINEIDRMLLRLYQVLLYLIQPLIWLRLLLRSRKAPA
YRKRWGERYGFCAGKVVAGGIMLHSVSVGETLAAIPLVRALRHRYPSLPITVTTMTPT
GSERVQSAFGKDVHHVYLPYDLPGSVNRFLDQVNPKLVIIMETELWPNLINTLHRRKI
PLVIANARLSARSAAGYKKIGSFIRTILQRITLIAAQNQEDGDRFIELGLKRSQLTVT
GSLKFDISVTPELAARAVTLRRQWAPHRPVWIATSTHDGEETILLEAHRQLLQQFPTL
LLILVPRHPERFGKAVELTQKIGLSYTLRSKGEVPSSSTQVVIGDTMGELMLLYGIAD
LAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICAKLEQAEGLITVTDTLSLV
KEITVLLTDEDCRLYYGRHAVDVLHENQGALQRLLHLLEPYLPQRSH"
misc_feature complement(57342..58544)
/locus_tag="YPTS_0054"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:180233"
misc_feature complement(57975..58523)
/locus_tag="YPTS_0054"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:203003"
misc_feature complement(57420..>57713)
/locus_tag="YPTS_0054"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
gene complement(59033..59998)
/locus_tag="YPTS_0055"
/db_xref="GeneID:6260560"
CDS complement(59033..59998)
/locus_tag="YPTS_0055"
/note="TIGRFAM: lipopolysaccharide heptosyltransferase I;
PFAM: glycosyl transferase family 9;
KEGG: ypi:YpsIP31758_0068 lipopolysaccharide
heptosyltransferase I"
/codon_start=1
/transl_table=11
/product="ADP-heptose--LPS heptosyltransferase"
/protein_id="YP_001870511.1"
/db_xref="GI:186893399"
/db_xref="InterPro:IPR002201"
/db_xref="InterPro:IPR011908"
/db_xref="GeneID:6260560"
/translation="MHVLIVKTSSMGDVLHTLPALTDAMNAIPGIRFDWVVEEGFSQI
PSWHPAVDKVIPVAIRRWRKNWFGSDTRQERCDFKRVVQQRSYDRVIDAQGLIKSAAL
ITRIAKGTKHGPDCKSAREPFASWFYNCRHEIDTKQHAVERIRQLFAKSLGYDKPESY
GDYAIAQRFLNQLPADAGQYLVFLHATTRDNKHWPESHWVQLIELVQPTGLKIKLPWG
AEHEHQRALRLAEHFPHVEVLPKLSLQQVAEVLAGAKAVVSVDTGLSHLTAALDRPNI
TLFGPTDPGLIGGYGKNQIAVISEQKKMDSLSAPTIMARLETLIS"
misc_feature complement(59036..59998)
/locus_tag="YPTS_0055"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature complement(59102..59992)
/locus_tag="YPTS_0055"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(59198..59200,59207..59212,59219..59221,
59255..59260,59351..59353,59444..59449))
/locus_tag="YPTS_0055"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(59998..61062)
/locus_tag="YPTS_0056"
/db_xref="GeneID:6260561"
CDS complement(59998..61062)
/locus_tag="YPTS_0056"
/note="catalyzes the transfer of the second heptose to the
heptosyl-KDO2 moiety of the lipopolysaccharide inner core"
/codon_start=1
/transl_table=11
/product="ADP-heptose--LPS heptosyltransferase"
/protein_id="YP_001870512.1"
/db_xref="GI:186893400"
/db_xref="InterPro:IPR002201"
/db_xref="InterPro:IPR011910"
/db_xref="GeneID:6260561"
/translation="MKILVIGPSWVGDMMMSQSLYRTLKAEYPAADIDVMAPAWCRPL
LARMPEVRHAIPMPLGHGAFAFEERRRLGLALRETEYDRAYVLPNSFKSALIPYFSGI
KRRIGWRGEMRYFLLNDLRILDKQAFPMMVQRYVALAYDKERIRSAADLPQPLLWPQL
QVRDEEIAETTASFNLTDNRPIIGFCPGAEFGPAKRWPHYHYATLAQKLIDDGYQVVL
FGSAKDNEAGEDIRQALSDTDREYCLNLAGQTSLEQAVVLIAACSAVVSNDSGLMHVA
AALNKPLVALYGPSSPDFTPPLSEKATVIRLITGYHKVRKGDSAQGYHQSLIDIQPEH
VMAALEKQLATQECSVKGGD"
misc_feature complement(60028..61062)
/locus_tag="YPTS_0056"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature complement(60040..61059)
/locus_tag="YPTS_0056"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(60238..60240,60247..60252,60259..60261,
60295..60300,60406..60408,60505..60507,60649..60651))
/locus_tag="YPTS_0056"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(61093..62025)
/gene="rfaD"
/locus_tag="YPTS_0057"
/db_xref="GeneID:6260562"
CDS complement(61093..62025)
/gene="rfaD"
/locus_tag="YPTS_0057"
/note="catalyzes the interconversion between
ADP-D-glycero-beta-D-manno-heptose and
ADP-L-glycero-beta-D-manno-heptose"
/codon_start=1
/transl_table=11
/product="ADP-L-glycero-D-manno-heptose-6-epimerase"
/protein_id="YP_001870513.1"
/db_xref="GI:186893401"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR011912"
/db_xref="GeneID:6260562"
/translation="MIIVTGGAGFIGSNIVKALNNIGYKDILVVDNLKDGTKFVNLVD
LDIADYMDKEDFVASIVAGDDMGDIDAIFHEGACSSTTEWDGKYMMDNNYQYSKDILH
FCLDRSIPFLYASSAATYGGRTDNFIEDRQYEQPLNVYGYSKFLFDQYVREILPQADS
QICGFRYFNVYGPREGHKGSMASVAFHLNNQINAGERPKLFAGSENFKRDFIYVGDVA
DVNLWFWQNGVSGIFNCGTGRAESFQAVADAVVDYHQSGPVEYIEFPEKLKGRYQAYT
QADLTKLRAAGYGKPFKTVAEGVKEYLAWLNRSV"
misc_feature complement(61102..62025)
/gene="rfaD"
/locus_tag="YPTS_0057"
/note="ADP-L-glycero-D-mannoheptose 6-epimerase (GME),
extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248"
/db_xref="CDD:187559"
misc_feature complement(61102..62025)
/gene="rfaD"
/locus_tag="YPTS_0057"
/note="ADP-L-glycero-D-mannoheptose-6-epimerase;
Provisional; Region: rfaD; PRK11150"
/db_xref="CDD:182998"
misc_feature complement(order(61492..61497,61516..61518,61522..61527,
61594..61596,61606..61608,61678..61686,61738..61740,
61750..61752,61762..61764,61789..61791,61795..61803,
61867..61869,61912..61914,61930..61938,61993..62001,
62008..62013))
/gene="rfaD"
/locus_tag="YPTS_0057"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187559"
misc_feature complement(order(61567..61569,61576..61581,61588..61590,
61600..61602,61609..61623,61633..61635,61732..61734,
61744..61746,61756..61758,61765..61776,61870..61872,
61876..61893,61897..61902,61909..61911,61915..61920,
61924..61929))
/gene="rfaD"
/locus_tag="YPTS_0057"
/note="homopentamer interface [polypeptide binding]; other
site"
/db_xref="CDD:187559"
misc_feature complement(order(61297..61299,61399..61401,61465..61467,
61474..61476,61480..61488,61519..61521,61783..61785))
/gene="rfaD"
/locus_tag="YPTS_0057"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187559"
misc_feature complement(order(61594..61596,61606..61608,61678..61680,
61747..61749))
/gene="rfaD"
/locus_tag="YPTS_0057"
/note="active site"
/db_xref="CDD:187559"
gene 62271..63482
/locus_tag="YPTS_0058"
/db_xref="GeneID:6260563"
CDS 62271..63482
/locus_tag="YPTS_0058"
/EC_number="2.3.1.29"
/note="catalyzes the formation of 2-amino-3-oxobutanoate
from acetyl-CoA and glycine"
/codon_start=1
/transl_table=11
/product="2-amino-3-ketobutyrate coenzyme A ligase"
/protein_id="YP_001870514.1"
/db_xref="GI:186893402"
/db_xref="InterPro:IPR001085"
/db_xref="InterPro:IPR001917"
/db_xref="InterPro:IPR004839"
/db_xref="InterPro:IPR005814"
/db_xref="InterPro:IPR011282"
/db_xref="GeneID:6260563"
/translation="MSLPCNKHPFYQQLEQQLDTTRTEGLYKNERVITSAQQANIAVA
DGSRVINFCANNYLGLANHPKLIAAAKAGMDSHGFGMASVRFICGTQDIHKELEHKLA
SFLGMEDAILYSSCFDANGGLFETLLGPEDAIISDALNHASIIDGVRLCKAKRYRYAN
NDMTELEAQLKQAKAEGARHIMIATDGVFSMDGVIANLKRVCDLADEYQALVMVDDSH
AVGVIGANGRGTHEYCEVMDRVDIITGTLGKALGGASGGYTAGRKELVEWLRQRSRPY
LFSNSLAPAIVAASIEVLSLLEEGGALRDRLWANARLFREKMSAAGFTLAGADHAIIP
VMLGEAKLAQDFANALLKEGIYVTGFFFPVVPKGQARIRTQMSAGHTTEQVERAIEAF
VRIGKQLNVIA"
misc_feature 62298..63458
/locus_tag="YPTS_0058"
/note="7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism]; Region: BioF; COG0156"
/db_xref="CDD:30505"
misc_feature 62409..63458
/locus_tag="YPTS_0058"
/note="KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS); Region: KBL_like;
cd06454"
/db_xref="CDD:99747"
misc_feature order(62433..62435,62613..62621,62691..62693,62826..62828,
62838..62843,62913..62915,62919..62924,63006..63008,
63015..63017,63387..63389)
/locus_tag="YPTS_0058"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99747"
misc_feature order(62613..62621,62691..62693,62826..62828,62838..62840,
62913..62915,62919..62924,63006..63008,63015..63017)
/locus_tag="YPTS_0058"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99747"
misc_feature 63015..63017
/locus_tag="YPTS_0058"
/note="catalytic residue [active]"
/db_xref="CDD:99747"
gene 63492..64517
/gene="tdh"
/locus_tag="YPTS_0059"
/db_xref="GeneID:6260564"
CDS 63492..64517
/gene="tdh"
/locus_tag="YPTS_0059"
/note="converts threonine and NAD to
1,2-amino-3-oxobutanoate and NADH; functions in threonine
catabolism"
/codon_start=1
/transl_table=11
/product="L-threonine 3-dehydrogenase"
/protein_id="YP_001870515.1"
/db_xref="GI:186893403"
/db_xref="InterPro:IPR002328"
/db_xref="InterPro:IPR004627"
/db_xref="InterPro:IPR011597"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="GeneID:6260564"
/translation="MKALSKLKAEEGIWMTDVPQPELGHNDIMIKIRKTAICGTDVHI
YNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGG
RTHLCRNTVGVGVNRPGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSF
DLVGEDVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMGVTRAVNVSKE
NLNDVMTELGMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQV
IFKGLFIKGIYGREMFETWYKMAALIQSGLDLTPIITHRFPIDEFQQGFDAMRSGKSG
KVVLSWD"
misc_feature 63492..64514
/gene="tdh"
/locus_tag="YPTS_0059"
/note="L-threonine 3-dehydrogenase; Validated; Region:
tdh; PRK05396"
/db_xref="CDD:180054"
misc_feature 63492..64505
/gene="tdh"
/locus_tag="YPTS_0059"
/note="Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR; cl16912"
/db_xref="CDD:211475"
misc_feature order(63603..63611,63618..63620,63933..63935,63945..63947,
64002..64019,64074..64079,64089..64091,64134..64136,
64206..64211,64275..64280,64347..64355)
/gene="tdh"
/locus_tag="YPTS_0059"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:176178"
gene complement(64655..65665)
/locus_tag="YPTS_0060"
/db_xref="GeneID:6260565"
CDS complement(64655..65665)
/locus_tag="YPTS_0060"
/note="PFAM: protein of unknown function DUF610 YibQ;
KEGG: ypi:YpsIP31758_0073 divergent polysaccharide
deacetylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870516.1"
/db_xref="GI:186893404"
/db_xref="InterPro:IPR006837"
/db_xref="GeneID:6260565"
/translation="MRYFNTRQFIIVSTLFIASTAQAGKLSIVIDDFGYRPQNENKIL
QMPLPISVAILPNAPYAREMATKAHNQGREILIHLPMAPQSKQPLERDTLQPSMSSEE
IQRIIRQAANNVPYAKGMNNHMGSAMTASLPGMQKVMQALGSYQLYFLDSVTIGNSQA
SKAAEGTGVKVIKRKIFLDDSQNEAAIRQQFNRAVALARRNGSAIAIGHPHPATIKVL
QQMLPQLPADIVLVRPSALLNEPVQSLSPDKTKPREPVKGQRLPAIKQCKAKASYVPE
KIYADKLFILLGESLMQNPAVIFIQQHWQQYFTPAPPATPIDEQKAIENTEKLPPKKA
AQ"
misc_feature complement(64955..65593)
/locus_tag="YPTS_0060"
/note="Putative catalytic domain of family 2
polysaccharide deacetylases (DACs) from bacteria; Region:
CE4_DAC2; cd10936"
/db_xref="CDD:200562"
misc_feature complement(order(65039..65041,65045..65047,65210..65212,
65297..65299,65303..65305,65420..65434,65570..65581))
/locus_tag="YPTS_0060"
/note="NodB motif; other site"
/db_xref="CDD:200562"
misc_feature complement(order(65039..65041,65291..65299,65432..65434,
65570..65575))
/locus_tag="YPTS_0060"
/note="putative active site [active]"
/db_xref="CDD:200562"
misc_feature complement(order(65039..65041,65573..65575))
/locus_tag="YPTS_0060"
/note="putative catalytic site [active]"
/db_xref="CDD:200562"
misc_feature complement(order(65297..65299,65432..65434,65570..65572))
/locus_tag="YPTS_0060"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:200562"
gene complement(65689..67059)
/locus_tag="YPTS_0061"
/db_xref="GeneID:6260566"
CDS complement(65689..67059)
/locus_tag="YPTS_0061"
/note="PFAM: Peptidase M23;
KEGG: yps:YPTB0059 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870517.1"
/db_xref="GI:186893405"
/db_xref="InterPro:IPR016047"
/db_xref="GeneID:6260566"
/translation="MKDRELLAKSITTKDAVSDGRESPSLLSDKLSRLPWSTLYASVF
CAGVLLLPFSGQAVEPPVAAKASENKNQLKTLQQDIAEKEKSVQQQKKQRSSLLDQLK
QQENTISQTSRSLRETQATLAELSKDIASLTTSIEKLQNQQSQQQSILSKQLAAAFKQ
GKHSSLQLILSGEESQRSERILAYFSYLNEARQKAIEELKQTRTTLSAEKKMLEQKQN
QHKALLDEQKAQQQKLEQARIARQKTLTSLEASLEKDQQSLAELKLNESRLRDQIAKA
EREAKARAEREAKEAARVREQVKVKEQQAKKTGSSYKPSESERSLMARTGGLGRPGGQ
ALWPVRGNVSHRFGEPLQGELRWKGMVITAPEGSEVKAIADGRVLLADWLQGYGLVVV
IEHGKGDMSLYGYNQSALVNVGAQVKAGQPIALVGTSGGQGEPSLYFEIRRQGQAVNP
QPWLGR"
misc_feature complement(65692..67059)
/locus_tag="YPTS_0061"
/note="AmiB activator; Provisional; Region: PRK11637"
/db_xref="CDD:183249"
misc_feature complement(65710..65991)
/locus_tag="YPTS_0061"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene complement(67069..68616)
/locus_tag="YPTS_0062"
/db_xref="GeneID:6260567"
CDS complement(67069..68616)
/locus_tag="YPTS_0062"
/EC_number="5.4.2.1"
/note="catalyzes the interconversion of 2-phosphoglycerate
and 3-phosphoglycerate"
/codon_start=1
/transl_table=11
/product="phosphoglyceromutase"
/protein_id="YP_001870518.1"
/db_xref="GI:186893406"
/db_xref="InterPro:IPR005995"
/db_xref="InterPro:IPR006124"
/db_xref="InterPro:IPR011258"
/db_xref="GeneID:6260567"
/translation="MSSTKKPLVLTILDGYGHREEQQDNAILNAKTPVMDVLWQQQPH
TLIAASGLDVGLPDGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKEGDFFTNPTLTAA
VDNAVKTGKAVHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPR
SAESSLKRFTAKFAELGNGRIASIIGRYYAMDRDNRWDRVQLAYDLLTQAKGEFTADN
AVAGLQAAYARGENDEFVKPTVIQATGEADAAMNEGDTLIFMNFRADRARQITRTFVN
ADFDGFKRDKVVNFGDFIMLTEYAADIKVACAYPPASLTNTFGEWLMKHDKTQLRISE
TEKYAHVTFFYNGGVEEPFKGEDRILINSPKVATYDLQPEMSSAELTEKLVSAIGSGK
YDVIICNYPNGDMVGHTGDYDAAVKAVETLDNCIEQVVAAVKAADGQLLITADHGNAE
QMRDPATGQAHTAHTSLPVPLIYVGNKAVKAVEGGKLSDIAPTMLSLMEMEIPQEMTG
KPLFIVE"
misc_feature complement(67078..68613)
/locus_tag="YPTS_0062"
/note="phosphoglyceromutase; Provisional; Region:
PRK05434"
/db_xref="CDD:180079"
misc_feature complement(67081..68601)
/locus_tag="YPTS_0062"
/note="2,3-bisphosphoglycerate-independent
phosphoglycerate mutase; Region: pgm_bpd_ind; TIGR01307"
/db_xref="CDD:130374"
gene 69014..69448
/locus_tag="YPTS_0063"
/db_xref="GeneID:6260568"
CDS 69014..69448
/locus_tag="YPTS_0063"
/note="PFAM: Rhodanese domain protein;
KEGG: ypi:YpsIP31758_0076 rhodanese domain protein"
/codon_start=1
/transl_table=11
/product="rhodanese domain-containing protein"
/protein_id="YP_001870519.1"
/db_xref="GI:186893407"
/db_xref="InterPro:IPR001763"
/db_xref="GeneID:6260568"
/translation="MLQEIMQFISQHPILSLAWVLLFGAVVFTSFKNSLSKVKEVTRG
EATRLINKEDAVVVDIRTREDYRKGHIANSINLIPSDIKNGNLGELEKHKTQPIIVVC
AMGTTSRASADMLSKAGFERVFTLKEGISGWSGENLPLARGK"
misc_feature 69146..69412
/locus_tag="YPTS_0063"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cd00158"
/db_xref="CDD:29073"
misc_feature 69317..69319
/locus_tag="YPTS_0063"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene 69567..69815
/locus_tag="YPTS_0064"
/db_xref="GeneID:6260569"
CDS 69567..69815
/locus_tag="YPTS_0064"
/note="TIGRFAM: glutaredoxin 3;
PFAM: glutaredoxin; glutaredoxin 2;
KEGG: ypi:YpsIP31758_0077 glutaredoxin 3"
/codon_start=1
/transl_table=11
/product="glutaredoxin 3"
/protein_id="YP_001870520.1"
/db_xref="GI:186893408"
/db_xref="InterPro:IPR002109"
/db_xref="InterPro:IPR008554"
/db_xref="InterPro:IPR011767"
/db_xref="InterPro:IPR011900"
/db_xref="InterPro:IPR014025"
/db_xref="GeneID:6260569"
/translation="MAKIEMYTKATCPFCHRAKALLNAKGAAFHEIAIDNDPAKREEM
IARSGRTTVPQIFIDGQHIGGCDDLHALDARGGLDPLL"
misc_feature 69573..69794
/locus_tag="YPTS_0064"
/note="Glutaredoxin (GRX) family, GRX bacterial class 1
and 3 (b_1_3)-like subfamily; composed of bacterial GRXs,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the...; Region:
GRX_GRXb_1_3_like; cd03418"
/db_xref="CDD:48633"
misc_feature order(69591..69593,69600..69608,69720..69725)
/locus_tag="YPTS_0064"
/note="GSH binding site [chemical binding]; other site"
/db_xref="CDD:48633"
misc_feature order(69600..69602,69609..69611)
/locus_tag="YPTS_0064"
/note="catalytic residues [active]"
/db_xref="CDD:48633"
gene 69903..70379
/locus_tag="YPTS_0065"
/db_xref="GeneID:6260570"
CDS 69903..70379
/locus_tag="YPTS_0065"
/note="molecular chaperone that is required for the normal
export of envelope proteins out of the cell cytoplasm; in
Escherichia coli this proteins forms a homotetramer in the
cytoplasm and delivers proteins to be exported to SecA"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecB"
/protein_id="YP_001870521.1"
/db_xref="GI:186893409"
/db_xref="InterPro:IPR003708"
/db_xref="GeneID:6260570"
/translation="MSEQNNTEMAFQIQRIYTKDISFEAPNAPQVFQQDWQPEVKLDL
DTASSQLAEDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSVAGIEGTQLAHCLGAYC
PNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQAEGEVEGVEQRQDA"
misc_feature 69933..70319
/locus_tag="YPTS_0065"
/note="Preprotein translocase subunit SecB. SecB is a
cytoplasmic component of the multisubunit membrane-bound
enzyme termed Sec protein translocase, which is the main
constituent of the General Secretory (type II) Pathway
involved in translocation of nascent...; Region:
Translocase_SecB; cd00557"
/db_xref="CDD:29643"
misc_feature order(69960..69962,69972..69974,70125..70127,70131..70133)
/locus_tag="YPTS_0065"
/note="SecA binding site; other site"
/db_xref="CDD:29643"
misc_feature order(70122..70124,70128..70130,70134..70136,70140..70142)
/locus_tag="YPTS_0065"
/note="Preprotein binding site; other site"
/db_xref="CDD:29643"
gene 70379..71398
/gene="gpsA"
/locus_tag="YPTS_0066"
/db_xref="GeneID:6260571"
CDS 70379..71398
/gene="gpsA"
/locus_tag="YPTS_0066"
/EC_number="1.1.1.94"
/note="catalyzes the NAD(P)H-dependent reduction of
glycerol 3-phosphate to glycerone phosphate"
/codon_start=1
/transl_table=11
/product="NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase"
/protein_id="YP_001870522.1"
/db_xref="GI:186893410"
/db_xref="InterPro:IPR006109"
/db_xref="InterPro:IPR006168"
/db_xref="InterPro:IPR011128"
/db_xref="InterPro:IPR013332"
/db_xref="GeneID:6260571"
/translation="MNTNPASMAVIGAGSYGTALAITLARNGHQVVLWGHDPKHIQQL
QQDRCNRAFLPDAAFPDTLRLETDLACALAASRDVLVVVPSHVFGAVLHQLKPHLRKD
ARIVWATKGLEAETGRLLQDVAREVLGEAIPLAVISGPTFAKELAAGLPTAIALASTD
VQFSEDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL
ITRGLAEMTRLGTALGADPSTFMGMAGLGDLVLTCTDNQSRNRRFGIMLGQGLGVKEA
QDNIGQVVEGYRNTKEVLALAQRHGVEMPITEQIYQVLYCHKNAREAALTLLGRTKKD
EKIGI"
misc_feature 70394..71368
/gene="gpsA"
/locus_tag="YPTS_0066"
/note="NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated; Region: gpsA; PRK00094"
/db_xref="CDD:178859"
misc_feature 70397..70867
/gene="gpsA"
/locus_tag="YPTS_0066"
/note="NAD-dependent glycerol-3-phosphate dehydrogenase
N-terminus; Region: NAD_Gly3P_dh_N; pfam01210"
/db_xref="CDD:201664"
misc_feature 70925..71359
/gene="gpsA"
/locus_tag="YPTS_0066"
/note="NAD-dependent glycerol-3-phosphate dehydrogenase
C-terminus; Region: NAD_Gly3P_dh_C; pfam07479"
/db_xref="CDD:116100"
gene 71661..72485
/gene="cysE"
/locus_tag="YPTS_0067"
/db_xref="GeneID:6260572"
CDS 71661..72485
/gene="cysE"
/locus_tag="YPTS_0067"
/EC_number="2.3.1.30"
/note="catalyzes the O-acetylation of serine"
/codon_start=1
/transl_table=11
/product="serine acetyltransferase"
/protein_id="YP_001870523.1"
/db_xref="GI:186893411"
/db_xref="InterPro:IPR001451"
/db_xref="InterPro:IPR005881"
/db_xref="InterPro:IPR010493"
/db_xref="GeneID:6260572"
/translation="MMSSEELEQVWSNIKSEARALAECEPMLASFFHATLLKHENLGS
ALSYILANKLANPIMPAIAIREVVEEAYRSDAHMIVSAARDILAVRLRDPAVDKYSTP
LLYLKGFHALQAYRIGHWLWAQDRKALAIYLQNQVSVAFGVDIHPAATIGCGIMLDHA
TGIVIGETAVVENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRG
AKIGAGSVVLQSVPAHTTAAGVPARIVGKPESDKPSLDMDQHFNGSIQGFEYGDGI"
misc_feature 71664..72482
/gene="cysE"
/locus_tag="YPTS_0067"
/note="serine acetyltransferase; Provisional; Region:
cysE; PRK11132"
/db_xref="CDD:182987"
misc_feature 71688..72002
/gene="cysE"
/locus_tag="YPTS_0067"
/note="Serine acetyltransferase, N-terminal; Region:
SATase_N; pfam06426"
/db_xref="CDD:191519"
misc_feature 72081..72383
/gene="cysE"
/locus_tag="YPTS_0067"
/note="Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl group
of L-serine to form O-acetylserine, as the first step of a
two-step biosynthetic pathway in bacteria and plants
leading to the formation of...; Region: LbH_SAT; cd03354"
/db_xref="CDD:100045"
misc_feature order(72084..72086,72090..72092,72135..72137,72237..72239,
72327..72329,72336..72338,72342..72344)
/gene="cysE"
/locus_tag="YPTS_0067"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100045"
misc_feature order(72132..72137,72192..72197,72213..72218,72237..72242,
72273..72275,72318..72320,72324..72329,72336..72338,
72342..72344,72366..72368,72381..72383)
/gene="cysE"
/locus_tag="YPTS_0067"
/note="active site"
/db_xref="CDD:100045"
misc_feature order(72132..72137,72213..72215,72237..72242)
/gene="cysE"
/locus_tag="YPTS_0067"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100045"
misc_feature order(72192..72197,72213..72218,72273..72275,72318..72320,
72324..72329,72336..72338,72342..72344,72366..72368,
72381..72383)
/gene="cysE"
/locus_tag="YPTS_0067"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100045"
gene complement(72608..73096)
/locus_tag="YPTS_0068"
/db_xref="GeneID:6260573"
CDS complement(72608..73096)
/locus_tag="YPTS_0068"
/note="TIGRFAM: RNA methyltransferase, TrmH family, group
2;
PFAM: tRNA/rRNA methyltransferase (SpoU);
KEGG: yps:YPTB0067 putative methyltransferase"
/codon_start=1
/transl_table=11
/product="RNA methyltransferase"
/protein_id="YP_001870524.1"
/db_xref="GI:186893412"
/db_xref="InterPro:IPR001537"
/db_xref="InterPro:IPR004440"
/db_xref="GeneID:6260573"
/translation="MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRL
RRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQLARLFALTTKGTPAHSAVSYQANDYL
LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALL
KE"
misc_feature complement(72614..73096)
/locus_tag="YPTS_0068"
/note="putative rRNA methylase; Provisional; Region:
PRK10358"
/db_xref="CDD:182406"
gene 73285..74349
/locus_tag="YPTS_0069"
/db_xref="GeneID:6260574"
CDS 73285..74349
/locus_tag="YPTS_0069"
/note="TIGRFAM: methylated-DNA--protein-cysteine
methyltransferase;
PFAM: helix-turn-helix- domain containing protein AraC
type; Ada metal-binding domain protein; methylguanine DNA
methyltransferase ribonuclease domain protein;
Methylated-DNA-[protein]-cysteine S-methyltransferase DNA
binding;
KEGG: yps:YPTB0068 bifunctional regulatory protein/DNA
repair protein"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_001870525.1"
/db_xref="GI:186893413"
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR001497"
/db_xref="InterPro:IPR004026"
/db_xref="InterPro:IPR008332"
/db_xref="InterPro:IPR014048"
/db_xref="GeneID:6260574"
/translation="MNNVKDPRWAAIINRDKTADGQFVYAVKTTSIYCRPSCPSRRAK
AEHIEFFIDNTAAEQAGYRPCKRCQPTQLSRAQQQVEKISQACRLIELAETPPKLNEL
AAQLGLSTFYFHRLFKAITGLTPKGYANATRSERIRAQLSHGGLVTDAIFEAGYNSSS
RFYAQSQQLLGMTPTRYRKGGCDARLHFAVGESSLGAILVAKSELGVCAILLGDDPVQ
LVQQLQDKFPQANLVGGDAEFEQWVAQVVGCVEAPKLGLGLPLDIRGTAFQQRVWQAL
REIPIGETASYADIASRIGSPTAVRAVAGACAANILAVAIPCHRVIRQDGALSGYRWG
VERKRLLLERESVEKEAEDH"
misc_feature 73300..74334
/locus_tag="YPTS_0069"
/note="bifunctional DNA-binding transcriptional dual
regulator/O6-methylguanine-DNA methyltransferase;
Provisional; Region: PRK15435"
/db_xref="CDD:185333"
misc_feature 73300..73497
/locus_tag="YPTS_0069"
/note="Metal binding domain of Ada; Region:
Ada_Zn_binding; pfam02805"
/db_xref="CDD:145780"
misc_feature 73549..73662
/locus_tag="YPTS_0069"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 73693..73821
/locus_tag="YPTS_0069"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 74086..74319
/locus_tag="YPTS_0069"
/note="The DNA repair protein O6-alkylguanine-DNA
alkyltransferase (ATase; also known as AGT, AGAT and MGMT)
reverses O6-alkylation DNA damage by transferring O6-alkyl
adducts to an active site cysteine irreversibly, without
inducing DNA strand breaks. ATases...; Region: ATase;
cd06445"
/db_xref="CDD:119438"
misc_feature order(74086..74091,74143..74148,74170..74172,74179..74181,
74185..74190,74194..74196,74203..74208,74212..74214,
74236..74238,74251..74253,74272..74274)
/locus_tag="YPTS_0069"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:119438"
misc_feature order(74143..74145,74236..74241,74245..74247,74317..74319)
/locus_tag="YPTS_0069"
/note="active site"
/db_xref="CDD:119438"
gene complement(74417..75793)
/gene="cpxA"
/locus_tag="YPTS_0070"
/db_xref="GeneID:6260575"
CDS complement(74417..75793)
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="part of two-component CpxA/CpxR system; senses
envelope stress; upregulates a number of periplasmic
folding and trafficking factors"
/codon_start=1
/transl_table=11
/product="two-component sensor protein"
/protein_id="YP_001870526.1"
/db_xref="GI:186893414"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:6260575"
/translation="MINSLTTRIFAIFWFTLALVLMLVLMVPKLDSRQLTVLLDSEQR
QGTMLEQHIEAELANDPANDLMWWRRLHRAIEKWAPPGQHLILVTSEGRIIGVQRQEV
QMVRNFIGQSDNADQPKKKKYGRVEMVGPFSIRDGEDNYQLYLIRPANSPQSDFINLM
FDRPLLLLIATMLISAPLLLWLAWSLAKPARKLKNAADDVARGNLKQHPELESGPQEF
LATGASFNQMISSLDRMVVAQQRLISDISHELRTPLTRLQLATALMRRRHGEGKELER
IEMEAQRLDSMINDLLVLSRSQHKNELHREPIKADELWSDVLENAQFEAEQMGKTLVV
TAPPGPWPLFCNPAALDSALENIVRNALRYSHHHIAVAFSIDNQGVTIIVDDDGPGVS
PEDREQIFRPFYRTDEARDRASGGTGLGLAIVETAVSQHRGWVKAEDSPLGGLRLIVW
LPLHPLKS"
misc_feature complement(74423..75793)
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="two-component sensor protein; Provisional; Region:
cpxA; PRK09470"
/db_xref="CDD:181885"
misc_feature complement(75086..75223)
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="HAMP (Histidine kinases, Adenylyl cyclases, Methyl
binding proteins, Phosphatases) domain; Region: HAMP;
smart00304"
/db_xref="CDD:197640"
misc_feature complement(order(75098..75103,75110..75115,75119..75124,
75131..75136,75140..75145,75194..75196,75200..75205,
75212..75217,75221..75223))
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(74906..75082)
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(74921..74923,74933..74935,74942..74944,
74954..74956,74963..74965,75014..75016,75023..75025,
75035..75037,75044..75046,75056..75058,75068..75070))
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(75050..75052)
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(74441..74746)
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(74453..74455,74459..74464,74477..74479,
74483..74485,74531..74542,74621..74626,74630..74632,
74636..74638,74642..74644,74705..74707,74714..74716,
74726..74728))
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(74714..74716)
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(74534..74536,74540..74542,74624..74626,
74630..74632))
/gene="cpxA"
/locus_tag="YPTS_0070"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(75790..76488)
/locus_tag="YPTS_0071"
/db_xref="GeneID:6260576"
CDS complement(75790..76488)
/locus_tag="YPTS_0071"
/note="response regulator in two-component regulatory
system with CpxA; part of the envelope stress response
system"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator CpxR"
/protein_id="YP_001870527.1"
/db_xref="GI:186893415"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR001867"
/db_xref="GeneID:6260576"
/translation="MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSS
IDLLLLDIMMPRKNGIETLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLAKPF
NDRELVARIRAILRRSNWSEQQQNAEQGAPTLEVDCLQLNPGRQEASFEGQPLELTGT
EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWF
KTLRGRGYLMVSET"
misc_feature complement(75793..76488)
/locus_tag="YPTS_0071"
/note="DNA-binding transcriptional regulator CpxR;
Provisional; Region: PRK10955"
/db_xref="CDD:182864"
misc_feature complement(76144..76476)
/locus_tag="YPTS_0071"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(76186..76191,76198..76200,76255..76257,
76312..76314,76333..76335,76462..76467))
/locus_tag="YPTS_0071"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(76333..76335)
/locus_tag="YPTS_0071"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(76312..76320,76324..76329))
/locus_tag="YPTS_0071"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(76183..76191)
/locus_tag="YPTS_0071"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(75805..76089)
/locus_tag="YPTS_0071"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(75814..75816,75829..75831,75865..75870,
75892..75894,75901..75903,75955..75960,76015..76017))
/locus_tag="YPTS_0071"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 76662..77150
/gene="cpxP"
/locus_tag="YPTS_0072"
/db_xref="GeneID:6260577"
CDS 76662..77150
/gene="cpxP"
/locus_tag="YPTS_0072"
/note="repressor of the Cpx envelope stress response
pathway which occurs via periplasmic interactions with
CpxA; CpxP is degraded by DegP protease especially in the
presence of misfolded substrates"
/codon_start=1
/transl_table=11
/product="periplasmic stress adaptor protein CpxP"
/protein_id="YP_001870528.1"
/db_xref="GI:186893416"
/db_xref="InterPro:IPR012899"
/db_xref="GeneID:6260577"
/translation="MRKVTTLVMASMFVLGSSAAFAADNTKVTEGYHGDGKMMMNKKG
DRGHHNMFDGINLTEQQRQQMRDLMRQSHQSQPRLDLEDHEAMHKLITADKFDEAAVR
AQAEKMSQNQIERHVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQKPAAQPSSA
QK"
misc_feature <76905..77096
/gene="cpxP"
/locus_tag="YPTS_0072"
/note="CpxP component of the bacterial Cpx-two-component
system and related proteins; Region: CpxP_like; cd09916"
/db_xref="CDD:197366"
misc_feature order(76911..76913,76923..76925,76932..76937,76947..76949,
76953..76955,76965..76967,76974..76976,76986..76988,
76998..77000,77010..77012,77019..77024,77031..77033,
77040..77042,77073..77078,77085..77087)
/gene="cpxP"
/locus_tag="YPTS_0072"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:197366"
gene 77401..77508
/locus_tag="YPTS_0073"
/db_xref="GeneID:6260578"
CDS 77401..77508
/locus_tag="YPTS_0073"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870529.1"
/db_xref="GI:186893417"
/db_xref="GeneID:6260578"
/translation="MRVGHCWLNVSVSEYLLECNDVPAIHHKMAGKSVT"
gene 77828..78787
/locus_tag="YPTS_0074"
/db_xref="GeneID:6260579"
CDS 77828..78787
/locus_tag="YPTS_0074"
/note="PFAM: putative transposase YhgA family protein;
KEGG: ypi:YpsIP31758_0086 putative transposase"
/codon_start=1
/transl_table=11
/product="putative transposase YhgA family protein"
/protein_id="YP_001870530.1"
/db_xref="GI:186893418"
/db_xref="InterPro:IPR006842"
/db_xref="InterPro:IPR010106"
/db_xref="GeneID:6260579"
/translation="MIAQEDAHDYHRPMKTTPTPHDALFKNFMTQPATACDLLEFHLP
PELRQLCDLSTLRLESGSFIENNLRACYSDVLYSLKTTVGDGYVYALIEHQSSPDKHM
AFRLMRYAIAAMQSHLEAGYDKLPLVIPILFYHGMVTPYPYPMSWLHAFNQPELAGQL
YCGNFPLVDVTVIPDHEIMTHRRIALLELLQKHIRQRDLSELLDQLVILIASGYTTED
QLKSAINYIIQVGETAEPEVFIRSLAHRLPEHEESLMTIAQKLEQKGEARGIVKGRVE
GRVEGAQETALKIARTMLANGLDRATVMKMTGLSEEELTQIHH"
misc_feature 77873..78784
/locus_tag="YPTS_0074"
/note="hypothetical protein; Provisional; Region:
PRK09956"
/db_xref="CDD:182167"
misc_feature 77882..78490
/locus_tag="YPTS_0074"
/note="Putative transposase, YhgA-like; Region:
Transposase_31; pfam04754"
/db_xref="CDD:203082"
gene complement(79093..79215)
/locus_tag="YPTS_0075"
/db_xref="GeneID:6260580"
CDS complement(79093..79215)
/locus_tag="YPTS_0075"
/note="KEGG: shw:Sputw3181_2043 transposase, IS4 family
protein"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_001870531.1"
/db_xref="GI:186893419"
/db_xref="GeneID:6260580"
/translation="MLTDEQWYRLHSLMLKSGRVYNKSEHRMTLEGILDRMRTG"
misc_feature complement(<79096..79212)
/locus_tag="YPTS_0075"
/note="DDE superfamily endonuclease; Region: DDE_4;
cl15789"
/db_xref="CDD:211471"
gene 79349..80251
/gene="fieF"
/locus_tag="YPTS_0076"
/db_xref="GeneID:6260581"
CDS 79349..80251
/gene="fieF"
/locus_tag="YPTS_0076"
/note="member of cation diffusion facilitator family; CDF;
membrane-bound; induced by both zinc and iron, but does
not induce resistance to zinc; can transport zinc(II) in a
proton-dependent manner; instead this protein induces iron
resistance; forms dimers"
/codon_start=1
/transl_table=11
/product="ferrous iron efflux protein F"
/protein_id="YP_001870532.1"
/db_xref="GI:186893420"
/db_xref="InterPro:IPR002524"
/db_xref="GeneID:6260581"
/translation="MDPQYARWVKAAALSATALASILLIIKIFAWWHTGSVSLLAALV
DSLVDLAASLTNLFVVRYSLQPADEEHTFGHGKAESLAALAQSMFISGSALFLFLTGF
RHLASPEPLQDPSIGIGVTLVALFSTLILVTFQRWVVRKTHSQAIRADMLHYQSDVLM
NGAILIALALSWYGFRRADALFALGIGVYILYSALRMGYEAVQSLLDRALPDDERQQI
IDIVTSWPGVIGAHDLRTRRSGQTRFIQLHLEMEDMMPLMEAHVLAEQVEHALLYRFP
GADVLIHQDPCSVVPKERHAHWEL"
misc_feature 79349..80245
/gene="fieF"
/locus_tag="YPTS_0076"
/note="ferrous iron efflux protein F; Reviewed; Region:
fieF; PRK09509"
/db_xref="CDD:181919"
misc_feature 79433..80233
/gene="fieF"
/locus_tag="YPTS_0076"
/note="Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism]; Region: MMT1; COG0053"
/db_xref="CDD:30402"
gene 80469..81452
/locus_tag="YPTS_0077"
/db_xref="GeneID:6260582"
CDS 80469..81452
/locus_tag="YPTS_0077"
/EC_number="2.7.1.11"
/note="catalyzes the formation of D-fructose
1,6-bisphosphate from D-fructose 6-phosphate in
glycolysis"
/codon_start=1
/transl_table=11
/product="6-phosphofructokinase"
/protein_id="YP_001870533.1"
/db_xref="GI:186893421"
/db_xref="InterPro:IPR000023"
/db_xref="InterPro:IPR012828"
/db_xref="InterPro:IPR015912"
/db_xref="InterPro:IPR015913"
/db_xref="GeneID:6260582"
/translation="MVKKIGVLTSGGDAPGMNAAIRGVVRAALSAGLDVFGIEDGYLG
LYENRMKKLDRYSVSDMINRGGTFLGSARFPEFRDPEVRKVALKNMHERGIDGLVVIG
GDGSYAGADLLTKEGGIHCVGLPGTIDNDVAGTDYTIGFFTALETVVEAIDRLRDTSS
SHQRISIVEVMGRYCGDLTLAAAIAGGCEFIAIPEVEFKRDDLVAEIKAGIAKGKKHA
IVAITEKLDDIDSLAKYIEKETGRETRGTVLGHIQRGGAPVAYDRILASRMGSYAVDL
LLQDHDYKKGGFCVGVQNEKMVHELISVCIAPENKKSKFKEDWYDTAKKLF"
misc_feature 80472..81449
/locus_tag="YPTS_0077"
/note="6-phosphofructokinase; Provisional; Region:
PRK03202"
/db_xref="CDD:179553"
misc_feature order(80502..80504,80592..80594,80685..80687,80778..80786,
80790..80795,80847..80849,80853..80855,80859..80861,
80979..80987,81138..81140,81219..81221,81228..81230)
/locus_tag="YPTS_0077"
/note="active site"
/db_xref="CDD:29437"
misc_feature order(80502..80504,80592..80594,80685..80687,80778..80786,
80790..80795)
/locus_tag="YPTS_0077"
/note="ADP/pyrophosphate binding site [chemical binding];
other site"
/db_xref="CDD:29437"
misc_feature order(80532..80534,80544..80546,80631..80633,80646..80648,
80655..80657,80877..80879,80913..80915,80925..80927,
80934..80936,81018..81023,81027..81029,81111..81113,
81255..81260,81270..81272,81291..81293,81348..81350,
81441..81443)
/locus_tag="YPTS_0077"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29437"
misc_feature order(80532..80534,80544..80546,80631..80636,80643..80648,
80934..80936,81027..81029,81033..81035,81105..81107,
81111..81119)
/locus_tag="YPTS_0077"
/note="allosteric effector site; other site"
/db_xref="CDD:29437"
misc_feature order(80847..80849,80853..80855,80859..80861,80958..80960,
80979..80987,81138..81140,81201..81203,81219..81221,
81228..81230)
/locus_tag="YPTS_0077"
/note="fructose-1,6-bisphosphate binding site; other site"
/db_xref="CDD:29437"
gene 81673..82662
/locus_tag="YPTS_0078"
/db_xref="GeneID:6260583"
CDS 81673..82662
/locus_tag="YPTS_0078"
/note="TIGRFAM: sulfate ABC transporter, periplasmic
sulfate-binding protein;
PFAM: extracellular solute-binding protein family 1;
KEGG: ypi:YpsIP31758_0090 sulfate ABC transporter,
sulfate-binding protein"
/codon_start=1
/transl_table=11
/product="sulfate transporter subunit"
/protein_id="YP_001870534.1"
/db_xref="GI:186893422"
/db_xref="InterPro:IPR000957"
/db_xref="InterPro:IPR005669"
/db_xref="InterPro:IPR006059"
/db_xref="GeneID:6260583"
/translation="MRKWGVGLSLLLLASGAIAKDIQLLNVSYDPTREFYQEYNQAFS
KYWQQQTGDKVTVRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKNWI
KRLPDNSAPYTSTIVFLVRKGNPKQIHDWSDLVKPGTSVITPNPKTSGGARWNYLAAW
GYALEHNNNDQAKAQEFVNALYKNVEVLDSGARGATNTFVERGIGDVLIAWENEALLA
VNEVGNGQFDIVTPSVSILAEPTVSVVDKVVDKRGTRDVADAYLKYLYSPEGQTIAAK
NYYRPRDPAVAAKFAKEFPQLKLFTIDEVFGGWTQAQKTHFATGGVFDEISKR"
misc_feature 81673..82659
/locus_tag="YPTS_0078"
/note="sulfate transporter subunit; Provisional; Region:
PRK10752"
/db_xref="CDD:182700"
misc_feature 81745..82512
/locus_tag="YPTS_0078"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_11; pfam13531"
/db_xref="CDD:205709"
gene 82740..82880
/locus_tag="YPTS_0079"
/db_xref="GeneID:6260584"
CDS 82740..82880
/locus_tag="YPTS_0079"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870535.1"
/db_xref="GI:186893423"
/db_xref="GeneID:6260584"
/translation="MVKQVVTANTGTTNRFIANTTSLYVVVLNVYRYRAACNSAHSKT
SK"
gene complement(82912..83688)
/locus_tag="YPTS_0080"
/db_xref="GeneID:6260585"
CDS complement(82912..83688)
/locus_tag="YPTS_0080"
/note="PFAM: extracellular solute-binding protein family
1;
KEGG: yps:YPTB0076 possible ABC transporter, periplasmic
molybdate binding protein"
/codon_start=1
/transl_table=11
/product="extracellular solute-binding protein"
/protein_id="YP_001870536.1"
/db_xref="GI:186893424"
/db_xref="InterPro:IPR006059"
/db_xref="InterPro:IPR011587"
/db_xref="GeneID:6260585"
/translation="MKYSNVIVSGLCMSMVSLATAAPTEVPSDEPVTLRIISSMATRQ
FLTEVIAQFAQQSKYQVELESVGGVDATKRVEAGEAFDVVILSANAIDKLIDSGKILP
NSRIDLVKSGVAIAVKEGAQIMDVSSEETVKQAVLAANTIAYSTGPSGVYLTEVFERW
GIAEQIKDRIVKVPPGVPVGSLVAKGEVELGFQQLSELLHLKGIIILGPLPTDIQIMT
HFSAGVPLKTNQQKAIKVLLDFLASPAATEAKIKNGMEPI"
misc_feature complement(82915..83652)
/locus_tag="YPTS_0080"
/note="ABC-type molybdate transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: ModA; COG0725"
/db_xref="CDD:31069"
misc_feature complement(82945..83553)
/locus_tag="YPTS_0080"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
gene complement(83806..85233)
/locus_tag="YPTS_0081"
/db_xref="GeneID:6260586"
CDS complement(83806..85233)
/locus_tag="YPTS_0081"
/note="TIGRFAM: anion transporter;
PFAM: sodium/sulphate symporter; Citrate transporter;
KEGG: ypi:YpsIP31758_0092 transporter, divalent anion:Na+
symporter (DASS) family"
/codon_start=1
/transl_table=11
/product="anion transporter"
/protein_id="YP_001870537.1"
/db_xref="GI:186893425"
/db_xref="InterPro:IPR001898"
/db_xref="InterPro:IPR004680"
/db_xref="GeneID:6260586"
/translation="MKNKIWKLCILVMIPLVIWFIPPPEGLTELSWRLSGFYLAAICG
LILKPFSEAVVLLGVVGFAGFFLNNTSQILVGYATSTVWLVFAAFGISISFVKTGLGR
RIAFHMIRFCGSTTLRLGYVTAFLEFVISPVTPSNTARSGGIVFPIILSVVKALGSEP
GDTAKKAGSYLMSNIYFVMKVSSFMFITAMAPNLLAADFAAKILGIHLDWGVWALAMV
VPGLLLLLIVPAVGYYLDKPELKKVDNKKIADEGLAELGPITRNEKLLVGIFISALLG
WALPSLLGQLFGITLKIDATAVAIMAMALCILLGVIKWDDVLQNKGAWNTLLWFGGII
GLASALSKEKVFDWLANLIQNNVDFGHNPFIALTIIGFLSIIIRYFFASASSYAIAML
PVFLTVGKVAGADPMALALVLAATNSYGGALTHYGGGSAPIIFGAGYNNVKQWWASGA
VIATVCFIVTMTVGYVWWQFLGFVK"
misc_feature complement(83818..85233)
/locus_tag="YPTS_0081"
/note="Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism]; Region: CitT; COG0471"
/db_xref="CDD:30819"
misc_feature complement(83830..85023)
/locus_tag="YPTS_0081"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cd00625"
/db_xref="CDD:29728"
misc_feature complement(order(83836..83874,83947..84003,84007..84009,
84076..84087,84103..84138,84214..84270,84310..84354,
84376..84390,84421..84444,84538..84582,84658..84729,
84763..84807,84817..84825,84829..84879,84946..84999))
/locus_tag="YPTS_0081"
/note="transmembrane helices; other site"
/db_xref="CDD:29728"
gene complement(85299..86012)
/locus_tag="YPTS_0082"
/db_xref="GeneID:6260587"
CDS complement(85299..86012)
/locus_tag="YPTS_0082"
/note="TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate
aldolase/oxaloacetate decarboxylase;
PFAM: Dimethylmenaquinone methyltransferase;
KEGG: ypi:YpsIP31758_0093 4-carboxy-4-hydroxy-2-oxoadipate
aldolase/oxaloacetate decarboxylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870538.1"
/db_xref="GI:186893426"
/db_xref="InterPro:IPR005493"
/db_xref="InterPro:IPR014165"
/db_xref="GeneID:6260587"
/translation="MSLVNMKGVVVTNIERAELALLQRFAEYGVATVHEAQLRQGLLD
ERIKPIQQGRCIAGNAVTVLVTPGDNWMFHVAVEQCQPGDVLLVAPTSECHDGFFGDL
LATSLLARGVVALVGDIGIRDSQTLREMNFPVWSRAVWAQGTVKASLGSVNVPVICAG
QLVNPGDIVVADDDGVVIVPREQATAIADAAQTRVDLETSKRQRLANGELGLDIYQMR
APLAKKGLRYVNSLNALKS"
misc_feature complement(85389..86000)
/locus_tag="YPTS_0082"
/note="hypothetical protein; Validated; Region: PRK06201"
/db_xref="CDD:180465"
misc_feature complement(85323..85997)
/locus_tag="YPTS_0082"
/note="hypothetical protein; Provisional; Region:
PRK09262"
/db_xref="CDD:181735"
gene complement(86009..86746)
/locus_tag="YPTS_0083"
/db_xref="GeneID:6260588"
CDS complement(86009..86746)
/locus_tag="YPTS_0083"
/note="PFAM: LmbE family protein;
KEGG: ypi:YpsIP31758_0094 GlcNAc-PI de-N-acetylase family"
/codon_start=1
/transl_table=11
/product="LmbE family protein"
/protein_id="YP_001870539.1"
/db_xref="GI:186893427"
/db_xref="InterPro:IPR003737"
/db_xref="GeneID:6260588"
/translation="MAMIPQKTALVVSAHSADFVWRAGGAIALHVEQGYQVHIVCLSY
GERGESAKLWRKGDMTEERVKASRHTEAQAAANVLGASIEFFDMGDYPLRADKESLFR
LADVFRRIQPHFVLTHSLADPYNYDHPLAANLAQEARIIAQAEGYRPGEAIIGAPPVY
CFEPHQPEQCGWKPDVLLDITSVWEKKYAAIQCMAGQEHLWEYYTRVALQRGVQAKRN
IGIASTKTIIHGEGYQSLFPRVTEDLS"
misc_feature complement(86012..86746)
/locus_tag="YPTS_0083"
/note="Uncharacterized proteins, LmbE homologs [Function
unknown]; Region: COG2120"
/db_xref="CDD:32303"
gene 86940..88118
/locus_tag="YPTS_0084"
/db_xref="GeneID:6260589"
CDS 86940..88118
/locus_tag="YPTS_0084"
/note="PFAM: regulatory protein LysR; LysR
substrate-binding;
KEGG: yps:YPTB0080 possible transcriptional regulator"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_001870540.1"
/db_xref="GI:186893428"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:6260589"
/translation="MTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKG
MLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDEGIEDLEPIWLFNERRLQIFLS
LYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCIS
RALNALHHIPEEITAHRGALTGSVRVGALPLSRARLLPLAMIKLISRHPGIKIVTNES
GFTALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQ
ELKDIQWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVRALLLGSDMVAAVS
SHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINCVREVIQSSNDK
"
misc_feature 86940..>87263
/locus_tag="YPTS_0084"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 86946..87092
/locus_tag="YPTS_0084"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 87222..88094
/locus_tag="YPTS_0084"
/note="pca operon transcription factor PcaQ; Region:
TF_pcaQ; TIGR02424"
/db_xref="CDD:162852"
misc_feature 87222..87398
/locus_tag="YPTS_0084"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 87486..88085
/locus_tag="YPTS_0084"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature order(87531..87536,87540..87545,87552..87554,87564..87566,
87570..87590,87870..87887,87903..87908,87912..87917)
/locus_tag="YPTS_0084"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene complement(88349..89116)
/gene="tpiA"
/locus_tag="YPTS_0085"
/db_xref="GeneID:6260590"
CDS complement(88349..89116)
/gene="tpiA"
/locus_tag="YPTS_0085"
/EC_number="5.3.1.1"
/note="Reversibly isomerizes the ketone sugar
dihydroxyacetone phosphate to the aldehyde sugar
glyceraldehyde-3-phosphate"
/codon_start=1
/transl_table=11
/product="triosephosphate isomerase"
/protein_id="YP_001870541.1"
/db_xref="GI:186893429"
/db_xref="InterPro:IPR000652"
/db_xref="GeneID:6260590"
/translation="MRHPLVMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPA
IYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYH
QESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFE
GAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAAVAAQVIIQYGGSVNDKNA
AELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA"
misc_feature complement(88406..89107)
/gene="tpiA"
/locus_tag="YPTS_0085"
/note="Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually...; Region: TIM; cd00311"
/db_xref="CDD:73362"
misc_feature complement(88406..89104)
/gene="tpiA"
/locus_tag="YPTS_0085"
/note="triosephosphate isomerase; Provisional; Region:
PRK14567"
/db_xref="CDD:173031"
misc_feature complement(order(88415..88420,88424..88426,88481..88483,
88598..88600,88616..88618,88832..88834,89084..89086,
89090..89092))
/gene="tpiA"
/locus_tag="YPTS_0085"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73362"
misc_feature complement(order(88823..88828,88859..88864,88871..88873,
88925..88927,88964..88966,88973..88975,88979..88987,
89081..89083,89090..89092))
/gene="tpiA"
/locus_tag="YPTS_0085"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73362"
misc_feature complement(order(88616..88618,88832..88834,89084..89086))
/gene="tpiA"
/locus_tag="YPTS_0085"
/note="catalytic triad [active]"
/db_xref="CDD:73362"
gene complement(89245..89880)
/locus_tag="YPTS_0086"
/db_xref="GeneID:6260591"
CDS complement(89245..89880)
/locus_tag="YPTS_0086"
/note="PFAM: protein of unknown function DUF1454;
KEGG: yps:YPTB0082 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870542.1"
/db_xref="GI:186893430"
/db_xref="InterPro:IPR009918"
/db_xref="GeneID:6260591"
/translation="MRKKIVSMRIILLLAALLLITFMLITTINHAHADPTNDSSPPKE
GAPPIAPYLLFNAPTFDLTLVKFRESYNRANPTLPINEFHAITVKEDSPPLTRAASKI
NENLYASTALEKGTGKIKTLQITYLPIKGNEEKTAKLLAINYMAALMRQFEPTLSVAQ
SLANVQKLLTEGKGSPFYAHTIGAIRYVVADNGEKGLTFAVEPIKLSLSEA"
misc_feature complement(89251..89739)
/locus_tag="YPTS_0086"
/note="Protein of unknown function (DUF1454); Region:
DUF1454; pfam07305"
/db_xref="CDD:148740"
gene 90094..90462
/locus_tag="YPTS_0087"
/db_xref="GeneID:6260592"
CDS 90094..90462
/locus_tag="YPTS_0087"
/note="PFAM: protein of unknown function DUF805;
KEGG: ypi:YpsIP31758_0098 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870543.1"
/db_xref="GI:186893431"
/db_xref="InterPro:IPR008523"
/db_xref="GeneID:6260592"
/translation="MGLWLLAMLVIFTLAGKEWLPIQSASFALVFLLWPTAAVVVKRL
HDRNKAGWWALLAVLAWMLMAGNWQMLTPIWQWGVGRFIPTLIFVMMFIDCGAFLGTE
GDNRFGPEAVPVKFFADKAK"
misc_feature <90094..90444
/locus_tag="YPTS_0087"
/note="Predicted membrane protein [Function unknown];
Region: COG3152"
/db_xref="CDD:32966"
gene complement(90803..91549)
/locus_tag="YPTS_0088"
/db_xref="GeneID:6260593"
CDS complement(90803..91549)
/locus_tag="YPTS_0088"
/note="PFAM: oxidoreductase FAD/NAD(P)-binding domain
protein; Oxidoreductase FAD-binding domain protein;
KEGG: ypi:YpsIP31758_0099 ferredoxin--NADP reductase"
/codon_start=1
/transl_table=11
/product="ferredoxin-NADP reductase"
/protein_id="YP_001870544.1"
/db_xref="GI:186893432"
/db_xref="InterPro:IPR001433"
/db_xref="InterPro:IPR008333"
/db_xref="GeneID:6260593"
/translation="MAEWVSGKITHIEHWTDALFSLQVNAPVDPFTAGQFAKLALDIN
GERVQRAYSYVNAPSDHNLEFYLVTVPEGKLSPRLDQLSVGGEVMITKQAAGFFVLEE
IPDCDTLWMLATGTAIGPYLSILQEGQDLERFKHLVLVHAARFAHDLSYLPLMQQLEQ
RYNGKLRIQTVVSREESPGSLTGRVPALIENGALEAAVGLKIDAKDSHVMLCGNPQMV
RDTQQLLKEQREMRKHLRRKPGHMTSEQYW"
misc_feature complement(90806..91549)
/locus_tag="YPTS_0088"
/note="ferredoxin-NADP reductase; Provisional; Region:
PRK10926"
/db_xref="CDD:182844"
misc_feature complement(90809..91528)
/locus_tag="YPTS_0088"
/note="Ferredoxin-NADP+ (oxido)reductase is an
FAD-containing enzyme that catalyzes the reversible
electron transfer between NADP(H) and electron carrier
proteins such as ferredoxin and flavodoxin. Isoforms of
these flavoproteins (i.e. having a non-covalently...;
Region: FNR1; cd06195"
/db_xref="CDD:99792"
misc_feature complement(order(90809..90811,91202..91204,91322..91327,
91331..91333,91340..91342,91346..91348,91352..91354,
91391..91402,91442..91444))
/locus_tag="YPTS_0088"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99792"
misc_feature complement(order(91391..91396,91400..91402))
/locus_tag="YPTS_0088"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99792"
misc_feature complement(order(91262..91264,91268..91270,91295..91297,
91313..91315,91322..91324,91331..91333))
/locus_tag="YPTS_0088"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99792"
misc_feature complement(order(91190..91192,91196..91207,91217..91219))
/locus_tag="YPTS_0088"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99792"
misc_feature complement(order(90908..90913,91118..91126,91199..91204))
/locus_tag="YPTS_0088"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99792"
gene complement(91704..92714)
/gene="glpX"
/locus_tag="YPTS_0089"
/db_xref="GeneID:6260594"
CDS complement(91704..92714)
/gene="glpX"
/locus_tag="YPTS_0089"
/note="type II fructose 1,6-bisphosphatae; in Escherichia
coli this protein forms a dimer and binds manganese"
/codon_start=1
/transl_table=11
/product="fructose 1,6-bisphosphatase II"
/protein_id="YP_001870545.1"
/db_xref="GI:186893433"
/db_xref="InterPro:IPR004464"
/db_xref="GeneID:6260594"
/translation="MKRELAIEFSRVTEAAALAGYKWLGRGDKNAADGAAVQAMRIML
NQVNIDGRIVIGEGEIDEAPMLFIGEHVGTGQGDAVDIAVDPIEGTRMTAMGQANALA
VLAVGDQGTFLHAPDMYMEKLVVGPAAKGAIDLNLPLEQNLCNIATALNKPLADLTVI
TLAKPRHDGIIAAMQQLGVKVFAIPDGDVAASILTCMPESEVDVMYCIGGAPEGVISA
AVIRALDGDMQGRLLPRHQVKGDSEDNRRIGEQELLRCKSMGIEAGNVLQLGDMARND
NVIFSATGITKGDLLEGIYRKGNMATTETLLIRGKSRTIRRIRSTHFLDRKDPALHEF
LL"
misc_feature complement(91749..92711)
/gene="glpX"
/locus_tag="YPTS_0089"
/note="Bacterial fructose-1,6-bisphosphatase,
glpX-encoded. A dimeric enzyme dependent on Mg(2+).
glpX-encoded FPBase (FBPase class II) differs from other
members of the inositol-phosphatase superfamily by
permutation of secondary structure elements. The core...;
Region: FBPase_glpX; cd01516"
/db_xref="CDD:30132"
misc_feature complement(91749..92708)
/gene="glpX"
/locus_tag="YPTS_0089"
/note="Bacterial fructose-1,6-bisphosphatase,
glpX-encoded; Region: FBPase_glpX; pfam03320"
/db_xref="CDD:146118"
misc_feature complement(order(92076..92078,92151..92153,92448..92462,
92544..92549,92616..92618))
/gene="glpX"
/locus_tag="YPTS_0089"
/note="putative active site [active]"
/db_xref="CDD:30132"
gene complement(92967..94490)
/locus_tag="YPTS_0090"
/db_xref="GeneID:6260595"
CDS complement(92967..94490)
/locus_tag="YPTS_0090"
/note="TIGRFAM: glycerol kinase;
PFAM: carbohydrate kinase FGGY;
KEGG: ypi:YpsIP31758_0101 glycerol kinase"
/codon_start=1
/transl_table=11
/product="glycerol kinase"
/protein_id="YP_001870546.1"
/db_xref="GI:186893434"
/db_xref="InterPro:IPR000577"
/db_xref="InterPro:IPR005999"
/db_xref="GeneID:6260595"
/translation="MTTENTTQKKYIVALDQGTTSSRAVVLDHNANIVSVSQREFTQI
YPKAGWVEHDPMEIWATQSSTLIEVLAKAGINSDEIAGIGITNQRETTIVWDKVTGKP
VYNAIVWQCRRTADICEKLKKEGLEEYIRHNTGLVVDPYFSGTKVKWILDNVEGARER
AERGELLFGTVDTWLVWNMTQGRVHVTDYTNASRTMMFNIRTKEWDDRMLKALNIPRA
MLPEVRPSSEIYGKTNIGGKGGTRIPIAGIAGDQQAALFGQLCVQPGMAKNTYGTGCF
LLMNTGEEAVQSTHGLLTTIACGPRGEVNYALEGAVFIGGASIQWLRDELKLIGDATD
SEYFATKVKNSNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNSNHIIRATLESIAY
QTRDVLDAMQADSGARLKSLRVDGGAVANNFLMQFQADILGTRVERPAIRESTALGAA
FLAGLATGFWDDLDEVKSKASIEREFRPGIETTERDIRYKGWKKAVARARDWEEHDE"
misc_feature complement(92982..94475)
/locus_tag="YPTS_0090"
/note="glycerol kinase; Provisional; Region: glpK;
PRK00047"
/db_xref="CDD:178821"
misc_feature complement(93000..94460)
/locus_tag="YPTS_0090"
/note="Escherichia coli glycerol kinase-like proteins;
belongs to the FGGY family of carbohydrate kinases;
Region: FGGY_EcGK_like; cd07786"
/db_xref="CDD:198361"
misc_feature complement(order(93111..93116,93120..93137,93141..93146,
93150..93158,93162..93164,93390..93392,93396..93401,
93405..93407,93426..93428,93531..93533,93549..93554,
93558..93560,93564..93566,93573..93575,93579..93581,
93594..93614,93630..93632,93636..93638,93663..93665,
93672..93674,93729..93734,93750..93755,93807..93818,
93882..93884,93888..93893,93909..93914,93921..93926,
94065..94070,94074..94076,94080..94091,94098..94100,
94134..94136,94146..94148,94155..94157,94161..94166,
94224..94250,94344..94346,94392..94394,94398..94400,
94407..94412,94416..94418,94422..94424,94431..94436,
94443..94445,94449..94451,94455..94460))
/locus_tag="YPTS_0090"
/note="N- and C-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:198361"
misc_feature complement(order(93228..93230,93237..93245,93486..93488,
93492..93497,93531..93536,93540..93545,93663..93665,
93672..93680,93735..93740,94068..94070,94164..94166,
94221..94229,94422..94424,94431..94439,94443..94445))
/locus_tag="YPTS_0090"
/note="active site"
/db_xref="CDD:198361"
misc_feature complement(order(93228..93230,93237..93245,93486..93488,
93492..93497,93531..93536,93540..93545,93672..93680,
94422..94424,94431..94439,94443..94445))
/locus_tag="YPTS_0090"
/note="MgATP binding site [chemical binding]; other site"
/db_xref="CDD:198361"
misc_feature complement(order(93738..93740,94434..94436,94443..94445))
/locus_tag="YPTS_0090"
/note="catalytic site [active]"
/db_xref="CDD:198361"
misc_feature complement(order(93738..93740,94443..94445))
/locus_tag="YPTS_0090"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198361"
misc_feature complement(order(93663..93665,93735..93740,94068..94070,
94164..94166,94221..94229,94434..94436))
/locus_tag="YPTS_0090"
/note="glycerol binding site [chemical binding]; other
site"
/db_xref="CDD:198361"
misc_feature complement(order(93786..93791,93948..93950,93957..93959,
94188..94190,94287..94292,94299..94301,94311..94316,
94323..94325,94374..94376))
/locus_tag="YPTS_0090"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:198361"
misc_feature complement(order(93345..93347,93354..93356,93366..93392,
93429..93431,93444..93446,93450..93452,93519..93521,
93528..93533,93540..93542,93549..93551,94161..94163,
94338..94340,94347..94349,94356..94358))
/locus_tag="YPTS_0090"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:198361"
misc_feature complement(order(93765..93767,93771..93776))
/locus_tag="YPTS_0090"
/note="FBP binding site [chemical binding]; other site"
/db_xref="CDD:198361"
misc_feature complement(order(93030..93032,93036..93047,93051..93053,
93057..93059,93261..93263,93267..93269))
/locus_tag="YPTS_0090"
/note="protein IIAGlc interface [polypeptide binding];
other site"
/db_xref="CDD:198361"
gene complement(94667..95515)
/locus_tag="YPTS_0091"
/db_xref="GeneID:6260596"
CDS complement(94667..95515)
/locus_tag="YPTS_0091"
/note="TIGRFAM: MIP family channel protein;
PFAM: major intrinsic protein;
KEGG: ypi:YpsIP31758_0102 glycerol uptake facilitator
protein"
/codon_start=1
/transl_table=11
/product="MIP family channel protein"
/protein_id="YP_001870547.1"
/db_xref="GI:186893435"
/db_xref="InterPro:IPR000425"
/db_xref="InterPro:IPR012269"
/db_xref="GeneID:6260596"
/translation="MSQTASSTLKGQCIAEFLGTGLLIFFGAGCVAALKLAGASFGQW
EISIIWGLGVAMAIYLTAAISGAHLNPAVTIALWLFACFERRKVLPYIVAQVAGAFCA
AALVYGLYYSLFVDFEQTHQMVRGSTESLQLAGIFSTYPNPHISVVQAFLVETVITAI
LMCLILALTDDGNGIPRGPLAPLLIGILIAVIGASMGPLTGFALNPARDLGPKAFSYL
AGWGDIAFTGGRDIPYFLVPIFGPIVGALLGAFGYRALIGRHLPCDVCTLEDEESTTI
TTERKA"
misc_feature complement(94754..95482)
/locus_tag="YPTS_0091"
/note="Major intrinsic protein (MIP) superfamily. Members
of the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules, and
ions out of and between cells. The channel proteins share
a common fold: the N-terminal...; Region: MIP; cd00333"
/db_xref="CDD:29423"
misc_feature complement(order(94892..94894,94901..94903,94910..94915,
95306..95314,95366..95368))
/locus_tag="YPTS_0091"
/note="amphipathic channel; other site"
/db_xref="CDD:29423"
misc_feature complement(order(94895..94903,95300..95308))
/locus_tag="YPTS_0091"
/note="Asn-Pro-Ala signature motifs; other site"
/db_xref="CDD:29423"
gene 96159..96398
/locus_tag="YPTS_0092"
/db_xref="GeneID:6260597"
CDS 96159..96398
/locus_tag="YPTS_0092"
/note="PFAM: protein of unknown function DUF904;
KEGG: ypi:YpsIP31758_0103 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870548.1"
/db_xref="GI:186893436"
/db_xref="InterPro:IPR009252"
/db_xref="GeneID:6260597"
/translation="MSFEVFEKLEVKVQQAIDTITLLQMEIEELKEKNNTLTQEVQDA
AGSREALVRENEQLKQEQHVWQDRLRALLGKMEEV"
misc_feature 96159..96395
/locus_tag="YPTS_0092"
/note="septal ring assembly protein ZapB; Provisional;
Region: PRK15422"
/db_xref="CDD:185320"
gene complement(96746..98860)
/locus_tag="YPTS_0093"
/db_xref="GeneID:6260598"
CDS complement(96746..98860)
/locus_tag="YPTS_0093"
/note="PFAM: ABC transporter transmembrane region; ABC
transporter related; peptidase C39 bacteriocin processing;
SMART: AAA ATPase;
KEGG: ypi:YpsIP31758_0105 bacteriocin ABC transporter,
ATP-binding/permease protein"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001870549.1"
/db_xref="GI:186893437"
/db_xref="InterPro:IPR001140"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR005074"
/db_xref="InterPro:IPR011527"
/db_xref="GeneID:6260598"
/translation="MNDTHFNEIKNRLNFSFRRKVPQVLQTEAAECGLACLVMACRYH
GMDIDLFNLRQRFGISSHGATLALLINISAQLKFKTRALSLDLDELRQLKTPCILHWD
MSHFVVLVAVKGTRFIIHDPAFGRRTVSLSEMSQHFTGVALELWPDSEFTRQKSRTRL
SLLSLMRNISGLPGFLTKIFCLSLMVEAINLLLPVGTQLVMDHVIIAEDHDLLALICI
GLLFFILFRTFLSMLRSWTSLVMGSLVDVQWKAGLFDHLLKLPLAYFEKRKLGDIQSR
FGSLDIIRSTLTNNVVNGIIDGLMSIGVFIMMFLYGGWLVWVVLGFTAMYMILRLATY
NQYRQASEEQIVKNAKASSHFMETLYGISTLKALGLAATRSQFWLNLNIDTTNANIRL
TKLDMFFGGVNTLIGTIDQVVILWLGASMVIDGQMTLGMFVAFNAYRGQFSDRATNLI
NMVLQLRMLALHSERIADIVFTETEKEQTPRQLLSPNQPAVFEARNIAFQYDNLSKPI
FSDLNIHVEAGESVAITGPSGIGKTTLMKVIAGLLTPSQGHILIDGLDITTVGLNNYR
DCIACVLQDDKLFAGSIADNIASFDVNKDEQRILSCANHCNIHKEIMHMPMGYETLIS
ELGGSLSGGQKQRLLIARALYRQPSLLFLDEATSHLDLANEAHINNAIASLKITRIFI
AHRPSTIASAQRIINLEKQNVS"
misc_feature complement(96761..98803)
/locus_tag="YPTS_0093"
/note="ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms]; Region: SunT; COG2274"
/db_xref="CDD:32455"
misc_feature complement(98420..98800)
/locus_tag="YPTS_0093"
/note="A sub-family of peptidase family C39. Peptidase
family C39 mostly contains bacteriocin-processing
endopeptidases from bacteria. The cysteine peptidases in
family C39 cleave the 'double-glycine' leader peptides
from the precursors of various bacteriocins; Region:
Peptidase_C39C; cd02419"
/db_xref="CDD:30272"
misc_feature complement(order(98498..98500,98546..98548,98765..98767,
98783..98785))
/locus_tag="YPTS_0093"
/note="putative active site [active]"
/db_xref="CDD:30272"
misc_feature complement(97532..98335)
/locus_tag="YPTS_0093"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature complement(96752..97387)
/locus_tag="YPTS_0093"
/note="This family represents the ABC component of the
protease secretion system PrtD, a 60-kDa integral membrane
protein sharing 37% identity with HlyB, the ABC component
of the alpha-hemolysin secretion pathway, in the
C-terminal domain. They export...; Region:
ABCC_Protease_Secretion; cd03246"
/db_xref="CDD:73005"
misc_feature complement(97262..97285)
/locus_tag="YPTS_0093"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73005"
misc_feature complement(order(96809..96811,96896..96901,97139..97141,
97259..97267,97271..97276))
/locus_tag="YPTS_0093"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73005"
misc_feature complement(97139..97150)
/locus_tag="YPTS_0093"
/note="Q-loop/lid; other site"
/db_xref="CDD:73005"
misc_feature complement(order(96944..96967,97094..97099))
/locus_tag="YPTS_0093"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73005"
misc_feature complement(96896..96913)
/locus_tag="YPTS_0093"
/note="Walker B; other site"
/db_xref="CDD:73005"
misc_feature complement(96878..96889)
/locus_tag="YPTS_0093"
/note="D-loop; other site"
/db_xref="CDD:73005"
misc_feature complement(96803..96823)
/locus_tag="YPTS_0093"
/note="H-loop/switch region; other site"
/db_xref="CDD:73005"
gene complement(98853..100145)
/locus_tag="YPTS_0094"
/db_xref="GeneID:6260599"
CDS complement(98853..100145)
/locus_tag="YPTS_0094"
/note="PFAM: secretion protein HlyD family protein;
KEGG: ypi:YpsIP31758_0106 auxiliary transport protein,
membrane fusion protein (MFP) family"
/codon_start=1
/transl_table=11
/product="secretion protein HlyD family protein"
/protein_id="YP_001870550.1"
/db_xref="GI:186893438"
/db_xref="InterPro:IPR003997"
/db_xref="InterPro:IPR006143"
/db_xref="InterPro:IPR006144"
/db_xref="GeneID:6260599"
/translation="MSSNQIFRRDAVEYIRTKWLGKALLTSGYSTTFIAALCAIFLVL
LITLIIYGTYTRRINVNGEVISQPHPINIFSPQQGFITKKWVEVGDIVRKGQHLYQID
VSRTTFSGNVSLNSLEAINNQLSQIDSIINNTQKNKELTLLNLRQQLAQYQKAHKKSQ
ELVDNAGKGMDDMRRTMASYGTYQRQGLITKDQLTNQRSLFYQQQNAFQSLNTQLIQE
SLQIAKLESEISTRASDFDNDISQYLFQKGDLKRQLAEVDASGMLLINSPSDGKIENM
SVTQGQMVNVNDSLVQLTPSDNPYYCLVLWVPNNSVPYINTGDKVNIRYDAFPFEKFG
QFPGRIISISNVPVSQQEIASYNIAPRLPNGGLIEPYYKVIVALDDIHFRYQSKPLML
SNGLKANVTLFLEKRPLYQWMLSPFYDIKKSVTGPVNE"
misc_feature complement(98883..100055)
/locus_tag="YPTS_0094"
/note="type I secretion membrane fusion protein, HlyD
family; Region: type_I_hlyD; TIGR01843"
/db_xref="CDD:130902"
misc_feature complement(<99831..99938)
/locus_tag="YPTS_0094"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature complement(99045..99353)
/locus_tag="YPTS_0094"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 100358..100597
/locus_tag="YPTS_0095"
/db_xref="GeneID:6260600"
CDS 100358..100597
/locus_tag="YPTS_0095"
/note="KEGG: ypi:YpsIP31758_0107 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870551.1"
/db_xref="GI:186893439"
/db_xref="GeneID:6260600"
/translation="MKELTQTEVMEVSGAGIVSDAGKVLGSGFGALIDAGASIFGIKP
NASATIGKIGESIGSAFDAGISGVKQFFGLSAPQQ"
gene 101227..101811
/locus_tag="YPTS_0096"
/db_xref="GeneID:6260601"
CDS 101227..101811
/locus_tag="YPTS_0096"
/note="KEGG: ypi:YpsIP31758_0109 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870552.1"
/db_xref="GI:186893440"
/db_xref="GeneID:6260601"
/translation="MQRGCCFLRSTTTAGVALIVAMTLSVSAWAISEQAKSEQATTVP
NNDIVCHVAHLNARFDDKEGLFEGASQSGTLLILRNISARACQVNAMPVISFEGAVGQ
QLAVFRKVPRGMRQEPVLSPVTVAAGAEVAVQLRWVASDAFDGNNCVTPEKVVVTLLG
GTLRLPFGRQMCAASGDTEFFSQAPVGPATNEVQ"
misc_feature 101374..>101679
/locus_tag="YPTS_0096"
/note="Protein of unknown function (DUF4232); Region:
DUF4232; pfam14016"
/db_xref="CDD:206186"
gene complement(101928..102413)
/locus_tag="YPTS_0097"
/db_xref="GeneID:6260602"
CDS complement(101928..102413)
/locus_tag="YPTS_0097"
/note="regulator of RNase E; increases half-life and
abundance of RNAs; interacts with RNase E possibly
inhibiting catalytic activity"
/codon_start=1
/transl_table=11
/product="ribonuclease activity regulator protein RraA"
/protein_id="YP_001870553.1"
/db_xref="GI:186893441"
/db_xref="InterPro:IPR005493"
/db_xref="InterPro:IPR010203"
/db_xref="InterPro:IPR014339"
/db_xref="GeneID:6260602"
/translation="MKYDTSDLCDIYHEEVNVVEPLFSNFGGRTSFGGKITTVKCFED
NGLLFDLLEENGLGRVLVVDGGGSVRRALINAELAELALKNEWEGIVVYGAVRQVDDL
AELDIGIQAMAAIPVGAADEGVGESDIRVNFGGVTFFSGDHLYADNTGIILSEDPLDI
E"
misc_feature complement(101937..102413)
/locus_tag="YPTS_0097"
/note="ribonuclease activity regulator protein RraA;
Provisional; Region: PRK09372"
/db_xref="CDD:181806"
gene complement(102555..103472)
/locus_tag="YPTS_0098"
/db_xref="GeneID:6260603"
CDS complement(102555..103472)
/locus_tag="YPTS_0098"
/note="catalyzes the formation of dimethylmenaquinone from
1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate"
/codon_start=1
/transl_table=11
/product="1,4-dihydroxy-2-naphthoate
octaprenyltransferase"
/protein_id="YP_001870554.1"
/db_xref="GI:186893442"
/db_xref="InterPro:IPR000537"
/db_xref="InterPro:IPR004657"
/db_xref="GeneID:6260603"
/translation="MSLSINTSQTQAWLESLRPRTLPLAFASIVTGSALAVWLDSFKP
AVALLALLTAGLLQILSNLANDYGDAVKGSDTEERIGPLRGMQKGIISHQQMKVALII
TVILTIISGIALIAVACEKPSDILGFLLLGLMAIVAAITYTVGRKPYGYMGLGDISVL
VFFGWLSVAGTYYLQAGHFDSIVMLPATACGLLATAVLNINNLRDIENDKANGKNTLA
VRLGPVVARYYHALLISAAIFCLALFSILHLHSWHGWIFLLAIPLLGKHALFVLRDPT
AAGMRPMLEQMVKAALLTNILFAVGLVFS"
misc_feature complement(102558..103451)
/locus_tag="YPTS_0098"
/note="1,4-dihydroxy-2-naphthoate octaprenyltransferase;
Validated; Region: PRK06080"
/db_xref="CDD:180389"
gene complement(103707..105038)
/gene="hslU"
/locus_tag="YPTS_0099"
/db_xref="GeneID:6260604"
CDS complement(103707..105038)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease ATP-binding subunit HslU"
/protein_id="YP_001870555.1"
/db_xref="GI:186893443"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004491"
/db_xref="InterPro:IPR013093"
/db_xref="GeneID:6260604"
/translation="MSEMTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEEL
RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
LTDAAVKMVRHQSIEKMRYRAEELAEERILDVLIPPAKNNWGVPDESQEPSATRQTFR
KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTNQLQSMFQNIAGQKQKPRKIKI
KEALKLLIEEEAAKLVNPEELKQQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREG
VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQVSSPSDLIPELQGRLPIRVELQA
LTTDDFERILTEPSASLTEQYKALMATEGVTIEFTREGIRKIAEAAWQVNERTENIGA
RRLHTVLERLMEDISYDASESSGQSITIDAEYVGKHLDELVADEDLSRFIL"
misc_feature complement(103710..105038)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="ATP-dependent protease ATP-binding subunit HslU;
Provisional; Region: hslU; PRK05201"
/db_xref="CDD:179962"
misc_feature complement(<104604..104987)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(104847..104870)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(104844..104867)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(104052..>104291)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="AAA domain (Cdc48 subfamily); Region: AAA_2;
pfam07724"
/db_xref="CDD:203740"
misc_feature complement(104268..104285)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(104064..104066)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(103770..104036)
/gene="hslU"
/locus_tag="YPTS_0099"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene complement(105109..105633)
/locus_tag="YPTS_0100"
/db_xref="GeneID:6260605"
CDS complement(105109..105633)
/locus_tag="YPTS_0100"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease peptidase subunit"
/protein_id="YP_001870556.1"
/db_xref="GI:186893444"
/db_xref="InterPro:IPR001353"
/db_xref="GeneID:6260605"
/translation="MTTIVSVRRDGHVVIGGDGQVTLGNTVMKGNAKKVRRLYNNKVI
AGFAGGTADAFTLFELFERKLEMHQGHLTKAAVELAKDWRTDRMLRKLEALLAVADET
ASLIITGNGDVVQPEDDLIAIGSGGPYAQSAARALLENTELGARDIVEKSLSIAGDIC
IYTNRFQTIEELTY"
misc_feature complement(105118..105630)
/locus_tag="YPTS_0100"
/note="Protease HslV and the ATPase/chaperone HslU are
part of an ATP-dependent proteolytic system that is the
prokaryotic homolog of the proteasome. HslV is a dimer of
hexamers (a dodecamer) that forms a central proteolytic
chamber with active sites on the...; Region:
protease_HslV; cd01913"
/db_xref="CDD:48442"
misc_feature complement(order(105259..105261,105532..105534,
105574..105576,105580..105582,105628..105630))
/locus_tag="YPTS_0100"
/note="active site"
/db_xref="CDD:48442"
misc_feature complement(order(105151..105153,105157..105162,
105169..105171,105181..105183,105214..105216,
105238..105240,105247..105252,105289..105291,
105301..105303,105382..105384,105553..105561))
/locus_tag="YPTS_0100"
/note="HslU subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48442"
gene complement(105733..106479)
/locus_tag="YPTS_0101"
/db_xref="GeneID:6260606"
CDS complement(105733..106479)
/locus_tag="YPTS_0101"
/note="TIGRFAM: cell division protein FtsN;
PFAM: Sporulation domain protein;
KEGG: ypi:YpsIP31758_0114 cell division protein FtsN"
/codon_start=1
/transl_table=11
/product="cell division protein FtsN"
/protein_id="YP_001870557.1"
/db_xref="GI:186893445"
/db_xref="InterPro:IPR007730"
/db_xref="InterPro:IPR011930"
/db_xref="GeneID:6260606"
/translation="MALAVALLVVFVGGLYFITHNKPGELPLLPNHDPRTGNGLPPKP
EERWRYIKELENRQIGVPMPTEPSAGGEVNAKTELTNEQRQLLEQMQADMRQQPTQLS
EVPYNQGMQQVPRSAVTIKPPATSVQPQPVTPPRQTTIPVQPQAPAPVRTPPAAPVTQ
AVTPPKVEKEKEKTQRWMVQCGSFKAVDQAESIRAQLAFAGIESRITSGGGWNRVVLG
PYNSKAAADKALQRLQGAGQSGCIPLSVGG"
misc_feature complement(105736..106449)
/locus_tag="YPTS_0101"
/note="cell division protein FtsN; Provisional; Region:
PRK12757"
/db_xref="CDD:183727"
misc_feature complement(105736..106449)
/locus_tag="YPTS_0101"
/note="Sporulation related domain; Region: SPOR; cl10051"
/db_xref="CDD:186898"
gene complement(106644..107672)
/locus_tag="YPTS_0102"
/db_xref="GeneID:6260607"
CDS complement(106644..107672)
/locus_tag="YPTS_0102"
/EC_number="5.1.1.1"
/note="negatively controls the transcription initiation of
genes such as deoCABD, udp, and cdd encoding catabolizing
enzymes and nupC, nupG, and tsx encoding transporting and
pore-forming proteins"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator CytR"
/protein_id="YP_001870558.1"
/db_xref="GI:186893446"
/db_xref="InterPro:IPR000843"
/db_xref="InterPro:IPR001761"
/db_xref="GeneID:6260607"
/translation="MENKKEFTMTTMKDVAEMAGVSTATVSRALMNPEKVSTVTRQKV
EQAVLAVGYSPHALSRNIKRNESRTILVIVPDISDPFFADVIQGIEHAAAQQGYLILI
GDCAQQTQQERTFVNLIITKQIDGMLLLGSNLPFDASKEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAYEAVNYLHELGHKRIACIAGPESLPLSHYRLQGYIQALRRNGITVD
NDYIIRGDFSYEAGAQSFAALMELPHPPTAIFSHNDVMAVGAIWQAKQLGLRIPQDVS
LVGFDDLKLSQFCDPPLTTVAQPRYQIGQQAMLLLLEQLQGHSVQSGSRLLDTELIIR
ESTAAPKH"
misc_feature complement(107481..107636)
/locus_tag="YPTS_0102"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature complement(order(107484..107489,107493..107498,
107505..107507,107514..107516,107553..107555,
107562..107567,107580..107582,107589..107594,
107598..107612,107634..107636))
/locus_tag="YPTS_0102"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature complement(106650..107576)
/locus_tag="YPTS_0102"
/note="DNA-binding transcriptional regulator CytR;
Provisional; Region: PRK11041"
/db_xref="CDD:182923"
misc_feature complement(107487..107516)
/locus_tag="YPTS_0102"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature complement(106665..107468)
/locus_tag="YPTS_0102"
/note="Ligand-binding domain of an uncharacterized
transcription regulator from Actinobacillus succinogenes
and its close homologs from other bacteria; Region:
PBP1_LacI_like_6; cd06284"
/db_xref="CDD:107279"
misc_feature complement(order(106887..106889,106986..106988,
107304..107306,107361..107363,107367..107369,
107376..107378,107403..107405,107466..107468))
/locus_tag="YPTS_0102"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107279"
misc_feature complement(order(106779..106781,106830..106832,
107067..107069,107436..107438))
/locus_tag="YPTS_0102"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107279"
gene complement(107795..107938)
/locus_tag="YPTS_0103"
/db_xref="GeneID:6260608"
CDS complement(107795..107938)
/locus_tag="YPTS_0103"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870559.1"
/db_xref="GI:186893447"
/db_xref="GeneID:6260608"
/translation="MANPLQRQEKGVRPIFYCLIVTTKQSFTLLSASQFEKTYLRHIF
YAN"
gene complement(108025..110223)
/locus_tag="YPTS_0104"
/db_xref="GeneID:6260609"
CDS complement(108025..110223)
/locus_tag="YPTS_0104"
/note="binding of PriA to forked DNA starts the assembly
of the primosome, also possesses 3'-5' helicase activity"
/codon_start=1
/transl_table=11
/product="primosome assembly protein PriA"
/protein_id="YP_001870560.1"
/db_xref="GI:186893448"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR005259"
/db_xref="InterPro:IPR006935"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:6260609"
/translation="MSVVQVALPVPLARTFDYRLDSAMACPVVGARVSVPFGKRKAIG
IVVGLSDTSTFPLEQLKTIDAILDNHSLFPPSLWRILCWATEYYHYPIGEVLFHALPI
LLRQGRPAQSAPLWQWFVTEQGRATPPESLKRAPKQQQALAALLQKPVYRHQVNEMAL
TESALQALRSKGLIDLRAQEATTTDWRHSFSVLGERLRLNTEQATAVGAIRSEDNQFA
AWLLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQTIARFRERFNAPVEVL
HSGLNDSERLSVWLRARSGEAAIVIGTRSALFTPFSRLGVIIIDEEHDSSYKQQEGWR
YHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLL
DLKGLPLKVGLSQPLLKRMKTHLQAGNQVILFLNRRGYAPALLCHECGWIAECQRCDH
YYTLHQNHRQLRCHHCDSQRPVPQQCPKCGSTHLVSVGVGTEQLENELAPLFPETPIT
RIDRDTTSRKGSLEQHLADVHQGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA
DFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHHPEHPLLQILLQQGYDAFAKQALEE
RKSVFLPPYTSHIIVRSEDHDNQQSALFLQQLRNLLEASPLKDEALWIMGPVPALQAK
RGGRFRWQLLLQHPSRQLLQRLIKTSQPLISTLPQARKVKWTIDVDPIDS"
misc_feature complement(108031..110223)
/locus_tag="YPTS_0104"
/note="primosome assembly protein PriA; Validated; Region:
PRK05580"
/db_xref="CDD:180144"
misc_feature complement(109147..109563)
/locus_tag="YPTS_0104"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(109531..109545)
/locus_tag="YPTS_0104"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(109255..109266)
/locus_tag="YPTS_0104"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(108436..>108660)
/locus_tag="YPTS_0104"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(108463..108465,108472..108474,
108484..108486,108583..108585))
/locus_tag="YPTS_0104"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 110476..110691
/gene="rpmE"
/locus_tag="YPTS_0105"
/db_xref="GeneID:6260610"
CDS 110476..110691
/gene="rpmE"
/locus_tag="YPTS_0105"
/note="RpmE; there appears to be two types of ribosomal
proteins L31 in bacterial genomes; some contain a CxxC
motif while others do not; Bacillus subtilis has both
types; the proteins in this cluster have the CXXC motif;
RpmE is found in exponentially growing Bacilli while YtiA
was found after exponential growth; expression of ytiA is
controlled by a zinc-specific transcriptional repressor;
RpmE contains one zinc ion and a CxxC motif is responsible
for this binding; forms an RNP particle along with
proteins L5, L18, and L25 and 5S rRNA; found crosslinked
to L2 and L25 and EF-G; may be near the
peptidyltransferase site of the 50S ribosome"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L31"
/protein_id="YP_001870561.1"
/db_xref="GI:186893449"
/db_xref="InterPro:IPR002150"
/db_xref="GeneID:6260610"
/translation="MKQGIHPKYEQVTASCSCGNVIKINSTVGHDLNLDVCGECHPFY
TGKQRDVASGGRVDRFNKRFSVPGAKK"
misc_feature 110476..110688
/gene="rpmE"
/locus_tag="YPTS_0105"
/note="50S ribosomal protein L31; Reviewed; Region: rpmE;
PRK00019"
/db_xref="CDD:178797"
gene complement(111233..111688)
/locus_tag="YPTS_0106"
/db_xref="GeneID:6260611"
CDS complement(111233..111688)
/locus_tag="YPTS_0106"
/note="PFAM: YiaAB two helix domain protein;
KEGG: ypi:YpsIP31758_0119 YiaA/B two helix domain protein"
/codon_start=1
/transl_table=11
/product="YiaAB two helix domain-containing protein"
/protein_id="YP_001870562.1"
/db_xref="GI:186893450"
/db_xref="InterPro:IPR008024"
/db_xref="GeneID:6260611"
/translation="MNPNYAKPSAAFTAASWSALLGGFVIFLIGLWNADMQLNERGYY
FAVLILGLFSAVSLQKTVRDKLEGLAITSIYYGLCWVAFIVAVLLLCIGLWNATLALS
EKGFYGVTFFMTLFGAIAVQKNTRDSAMSSDTESASLFKKVRDQLKAED"
misc_feature complement(111305..111688)
/locus_tag="YPTS_0106"
/note="Predicted membrane protein [Function unknown];
Region: COG4682"
/db_xref="CDD:34299"
misc_feature complement(111497..111655)
/locus_tag="YPTS_0106"
/note="yiaA/B two helix domain; Region: YiaAB; pfam05360"
/db_xref="CDD:114102"
misc_feature complement(111308..111466)
/locus_tag="YPTS_0106"
/note="yiaA/B two helix domain; Region: YiaAB; pfam05360"
/db_xref="CDD:114102"
gene complement(112037..112354)
/locus_tag="YPTS_0107"
/db_xref="GeneID:6260612"
CDS complement(112037..112354)
/locus_tag="YPTS_0107"
/note="when combined with S-adenosylmethionine represses
the expression of the methionine regulon and of proteins
involved in S-adenosylmethionine synthesis"
/codon_start=1
/transl_table=11
/product="transcriptional repressor protein MetJ"
/protein_id="YP_001870563.1"
/db_xref="GI:186893451"
/db_xref="InterPro:IPR002084"
/db_xref="GeneID:6260612"
/translation="MAEWNGEYVSPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR
QVNNLRHATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKILMRELGVDPDT
WEY"
misc_feature complement(112043..112351)
/locus_tag="YPTS_0107"
/note="Met Repressor, MetJ. MetJ is a bacterial
regulatory protein that uses S-adenosylmethionine (SAM) as
a corepressor to regulate the production of Methionine.
MetJ binds arrays of two to five adjacent copies of an
eight base-pair 'metbox' sequence. MetJ...; Region:
Met_repressor_MetJ; cd00490"
/db_xref="CDD:119402"
misc_feature complement(order(112142..112144,112157..112165,
112169..112174,112178..112183,112190..112192,
112235..112237,112244..112249,112253..112258,
112262..112297,112316..112318,112322..112327))
/locus_tag="YPTS_0107"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:119402"
misc_feature complement(order(112190..112198,112232..112234,
112271..112273,112277..112291,112301..112303))
/locus_tag="YPTS_0107"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:119402"
misc_feature complement(order(112139..112144,112151..112153,
112157..112165,112169..112177,112184..112186,
112223..112228,112235..112237))
/locus_tag="YPTS_0107"
/note="corepressor binding sites; other site"
/db_xref="CDD:119402"
gene 112651..113892
/locus_tag="YPTS_0108"
/db_xref="GeneID:6260613"
CDS 112651..113892
/locus_tag="YPTS_0108"
/EC_number="2.5.1.48"
/note="catalyzes the formation of cystathionine from
L-cysteine and O-succinyl-L-homoserine"
/codon_start=1
/transl_table=11
/product="cystathionine gamma-synthase"
/protein_id="YP_001870564.1"
/db_xref="GI:186893452"
/db_xref="InterPro:IPR000277"
/db_xref="InterPro:IPR011821"
/db_xref="GeneID:6260613"
/translation="MSRCIDVRILCVYSGVTFSRSRLVEINMTRKQATIAVRSGLNDD
EQYGCVVPPIHLSSTYNFIDFNQPRTHDYSRRGNPTRDVVQRALAELEGGAGAVMTSS
GMSAIHLVCTTFLQPGDLLVAPHDCYGGSYRLFDSLSKRGAYRVLFVDQGDEAALNRA
LAEKPKLVLIETPSNPLLRVVDIAAICQAARAAGALTVCDNTFLSPALQQPLSLGADL
VVHSCTKYLNGHSDVVAGAVIAKDPELVVELAWWANNIGVTGAAFDSYLLLRGLRTLS
PRMAQQQRNADDIVRYLQQQPLVKKLYHPSLPQHPGHEIACRQQSGFGAMLSFELDGD
EQVMRRFLSALELFTLAESLGGVESLISHAATMTHAGMAAEARIAAGITDSLLRISVG
IEDSEDLIADLDHAFQLAVTR"
misc_feature 112732..113889
/locus_tag="YPTS_0108"
/note="cystathionine gamma-synthase; Provisional; Region:
PRK08045"
/db_xref="CDD:169194"
misc_feature 112792..113871
/locus_tag="YPTS_0108"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature order(112816..112827,112831..112836,112867..112869,
112873..112875,112951..112956,112960..112965,
113032..113034,113047..113049,113056..113058,
113320..113322,113344..113346,113350..113352,
113401..113403,113431..113433,113437..113442,
113677..113679)
/locus_tag="YPTS_0108"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature order(112954..112962,113032..113034,113161..113163,
113248..113250,113314..113316,113320..113325,
113350..113352)
/locus_tag="YPTS_0108"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature order(112954..112962,113032..113034,113248..113250,
113257..113259,113314..113316,113320..113325)
/locus_tag="YPTS_0108"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature 113323..113325
/locus_tag="YPTS_0108"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
gene 113895..116330
/gene="metL"
/locus_tag="YPTS_0109"
/db_xref="GeneID:6260614"
CDS 113895..116330
/gene="metL"
/locus_tag="YPTS_0109"
/EC_number="1.1.1.3"
/EC_number="2.7.2.4"
/note="multifunctional homodimeric enzyme that catalyzes
the phosphorylation of aspartate to form
aspartyl-4-phosphate as well as conversion of aspartate
semialdehyde to homoserine; functions in a number of amino
acid biosynthetic pathways"
/codon_start=1
/transl_table=11
/product="bifunctional aspartate kinase II/homoserine
dehydrogenase II"
/protein_id="YP_001870565.1"
/db_xref="GI:186893453"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001341"
/db_xref="InterPro:IPR001342"
/db_xref="InterPro:IPR005106"
/db_xref="GeneID:6260614"
/translation="MNATAVAAAATGRQLHKFGGSSLADVKCYLRVANIMANYSHPGD
LMVVSAAGSTTNQLISWLKLSQNDRLSAHQVQQSLRRYQHDLINGLLPPEMAEPLISE
FIHDLERLAGLLDNKIDDVIYAEVVGHGEIWSARLMSALLNKLDMDAVWLDARRFLRA
ERAAQPQIDESRSYPLLQQLMAQHPHQRLVVTGFISRNEAGETVLLGRNGSDYSATQV
GALAGAERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHTRTLQP
VSGSDIDLQLRCSYQPEQGSTRIERVLASGLGAKIVTSHDDVCLIELQIASHHDFSLA
QKEIDLLLKRAQIKPLATGIHPDRNLLQLCYTSEVVNSALRVLEDAALPGKLSLREGL
ALVALVGAGVSKNPLHSHRFYQQLKDQPVEFVWQAEDGISMVAVLRLGPTEHLIQGLH
QSLFRAEKRIGLMLFGKGNIGARWLELFAREQKSLSARSGFEFVLAGVVDSRRSLLSY
DGLDASRTLAFYNDEAKEQDEESLFLWMRAHPFDDLVVLDVTASPSLAEQYLDFASYG
FHVISANKLAGASSSNNYRQIRDAFAKTGRHWLYNATVGAGLPVNHTVRDLRDSGDSI
LAISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRVDLSGQDVMRKLVILA
REAGYDIEPNQVRVESLVPAGAESGSVDQFFENGEALNQQMIQRLEAAKEMGLVLRYV
ARFDANGKARVGVEAVRTDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAG
AIQSDLNRLSQLL"
misc_feature 113928..116327
/gene="metL"
/locus_tag="YPTS_0109"
/note="bifunctional aspartate kinase II/homoserine
dehydrogenase II; Provisional; Region: metL; PRK09466"
/db_xref="CDD:181881"
misc_feature 113934..114794
/gene="metL"
/locus_tag="YPTS_0109"
/note="AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK),
AK-HSDH; this CD includes the N-terminal catalytic domain
of aspartokinase (AK) of the bifunctional enzyme AK -
homoserine dehydrogenase (HSDH). These aspartokinases are
found in bacteria (E. coli...; Region: AAK_AK-HSDH;
cd04257"
/db_xref="CDD:58623"
misc_feature order(113943..113945,114057..114059,114285..114287,
114528..114530,114663..114665,114702..114704)
/gene="metL"
/locus_tag="YPTS_0109"
/note="putative catalytic residues [active]"
/db_xref="CDD:58623"
misc_feature order(113943..113945,113949..113957,114588..114593,
114600..114605)
/gene="metL"
/locus_tag="YPTS_0109"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58623"
misc_feature order(114039..114044,114057..114059,114285..114287)
/gene="metL"
/locus_tag="YPTS_0109"
/note="putative aspartate binding site [chemical binding];
other site"
/db_xref="CDD:58623"
misc_feature 115290..115697
/gene="metL"
/locus_tag="YPTS_0109"
/note="Homoserine dehydrogenase, NAD binding domain;
Region: NAD_binding_3; pfam03447"
/db_xref="CDD:202636"
misc_feature 115719..116306
/gene="metL"
/locus_tag="YPTS_0109"
/note="Homoserine dehydrogenase; Region: Homoserine_dh;
pfam00742"
/db_xref="CDD:201423"
gene 116563..117447
/gene="metF"
/locus_tag="YPTS_0110"
/db_xref="GeneID:6260615"
CDS 116563..117447
/gene="metF"
/locus_tag="YPTS_0110"
/EC_number="1.5.1.20"
/note="MTHFR; catalyzes NADH-linked reduction of
5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate
using FAD as a cofactor"
/codon_start=1
/transl_table=11
/product="5,10-methylenetetrahydrofolate reductase"
/protein_id="YP_001870566.1"
/db_xref="GI:186893454"
/db_xref="InterPro:IPR003171"
/db_xref="InterPro:IPR004620"
/db_xref="GeneID:6260615"
/translation="MSFFHANQREALNQSLSELQGQINVSFEFFPPRTSEMEDTLWSS
IDRLSTLKPKFVSVTYGANSGERDRTHSIIKGIKERTGLEAAPHLTCIDASPTQLRDI
AIDYWNSGIRHIVALRGDLPPNSGKPEMYACDLVGLLKDVGDFDISVAAYPEIHPEAK
SAQADLINLKRKIDAGANRAITQFFFDVESYLRFRDRCVATGIDVEIVPGILPVSNFK
QLQRFATMTNVRVPNWMTSIFDGLDNDPETRKMVGASVAMDMVKILSREGVKDFHFYT
LNRAELSYAICHTLGVRP"
misc_feature 116596..117435
/gene="metF"
/locus_tag="YPTS_0110"
/note="Methylenetetrahydrofolate reductase; Region: MTHFR;
pfam02219"
/db_xref="CDD:145399"
misc_feature 116635..117432
/gene="metF"
/locus_tag="YPTS_0110"
/note="Methylenetetrahydrofolate reductase (MTHFR).
5,10-Methylenetetrahydrofolate is reduced to
5-methyltetrahydrofolate by methylenetetrahydrofolate
reductase, a cytoplasmic, NAD(P)-dependent enzyme.
5-methyltetrahydrofolate is utilized by methionine
synthase...; Region: MTHFR; cd00537"
/db_xref="CDD:29637"
misc_feature order(116740..116742,116824..116826,116911..116919,
116953..116958,117010..117012,117016..117018,
117028..117030,117034..117036,117055..117057,
117064..117066,117073..117078,117103..117105,
117109..117111,117385..117387)
/gene="metF"
/locus_tag="YPTS_0110"
/note="FAD binding site [chemical binding]; other site"
/db_xref="CDD:29637"
gene complement(117583..117750)
/locus_tag="YPTS_0111"
/db_xref="GeneID:6260616"
CDS complement(117583..117750)
/locus_tag="YPTS_0111"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870567.1"
/db_xref="GI:186893455"
/db_xref="GeneID:6260616"
/translation="MPSEGRLSRKRIGPVRQRNDESREPTQWASDSAKARGSKGATLM
APLAVGSSEAR"
gene 117990..118145
/locus_tag="YPTS_0112"
/db_xref="GeneID:6260617"
CDS 117990..118145
/locus_tag="YPTS_0112"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870568.1"
/db_xref="GI:186893456"
/db_xref="GeneID:6260617"
/translation="MSGHGRQRKARLGRDAHRAGSSARKTQAVYPQGNISRKPQVQEG
RLALLLG"
gene complement(118308..120944)
/locus_tag="YPTS_0113"
/db_xref="GeneID:6260618"
CDS complement(118308..120944)
/locus_tag="YPTS_0113"
/EC_number="4.1.1.31"
/note="catalyzes the formation of oxaloacetate from
phosphoenolpyruvate"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate carboxylase"
/protein_id="YP_001870569.1"
/db_xref="GI:186893457"
/db_xref="InterPro:IPR001449"
/db_xref="GeneID:6260618"
/translation="MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKS
SRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPE
ALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQL
DHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPA
FLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATD
LFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLK
GERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRI
DVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAET
QEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLD
DLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKT
CEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPE
VTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFR
AATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRA
IDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLR
DQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPD
ACVEQALMVTIAGVAAGMRNTG"
misc_feature complement(118311..120944)
/locus_tag="YPTS_0113"
/note="phosphoenolpyruvate carboxylase; Reviewed; Region:
PRK00009"
/db_xref="CDD:178790"
misc_feature complement(118311..120941)
/locus_tag="YPTS_0113"
/note="Phosphoenolpyruvate carboxylase [Energy production
and conversion]; Region: Ppc; COG2352"
/db_xref="CDD:32499"
gene complement(121318..122481)
/locus_tag="YPTS_0114"
/db_xref="GeneID:6260619"
CDS complement(121318..122481)
/locus_tag="YPTS_0114"
/EC_number="3.5.1.16"
/note="catalyzes the formation of L-ornithine from
N(2)-acetyl-L-ornithine in arginine biosynthesis"
/codon_start=1
/transl_table=11
/product="acetylornithine deacetylase"
/protein_id="YP_001870570.1"
/db_xref="GI:186893458"
/db_xref="InterPro:IPR001261"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR010169"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:6260619"
/translation="MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADL
GFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLT
EHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAAN
TQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQ
LMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSD
LNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYC
TEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK"
misc_feature complement(121324..122481)
/locus_tag="YPTS_0114"
/note="acetylornithine deacetylase; Provisional; Region:
PRK05111"
/db_xref="CDD:179939"
misc_feature complement(121342..122460)
/locus_tag="YPTS_0114"
/note="M20 Peptidase acetylornithine deacetylase; Region:
M20_ArgE; cd03894"
/db_xref="CDD:193514"
misc_feature complement(order(121966..121968,122038..122043,
122137..122139,122245..122247))
/locus_tag="YPTS_0114"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193514"
misc_feature complement(order(121486..121488,121681..121683,
121687..121689,121711..121716,121732..121755,
121759..121761,121822..121824,121831..121836,
121840..121845,121852..121857,121861..121863,
121879..121890,121921..121923))
/locus_tag="YPTS_0114"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193514"
gene 122732..123736
/gene="argC"
/locus_tag="YPTS_0115"
/db_xref="GeneID:6260620"
CDS 122732..123736
/gene="argC"
/locus_tag="YPTS_0115"
/EC_number="1.2.1.38"
/note="catalyzes the reduction of N-acetyl-5-glutamyl
phosphate to N-acetyl-L-glutamate 5-semialdehyde in
arginine biosynthesis and the reduction of
N-acetyl-gamma-aminoadipyl-phosphate to
N-acetyl-L-aminoadipate-semialdehyde in lysine
biosynthesis; involved in both the arginine and lysine
biosynthetic pathways; lysine is produced via the AAA
pathway, lysine from alpha-aminoadipate"
/codon_start=1
/transl_table=11
/product="N-acetyl-gamma-glutamyl-phosphate reductase"
/protein_id="YP_001870571.1"
/db_xref="GI:186893459"
/db_xref="InterPro:IPR000534"
/db_xref="InterPro:IPR000706"
/db_xref="InterPro:IPR006025"
/db_xref="InterPro:IPR012280"
/db_xref="GeneID:6260620"
/translation="MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKL
LSELHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDL
SGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQ
LALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEI
VAHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQG
VPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
"
misc_feature 122732..123730
/gene="argC"
/locus_tag="YPTS_0115"
/note="N-acetyl-gamma-glutamyl-phosphate reductase;
Validated; Region: argC; PRK00436"
/db_xref="CDD:179024"
misc_feature 122747..123169
/gene="argC"
/locus_tag="YPTS_0115"
/note="Semialdehyde dehydrogenase, NAD binding domain;
Region: Semialdhyde_dh; smart00859"
/db_xref="CDD:197927"
misc_feature order(122753..122755,122759..122764,122768..122770,
122828..122836,122960..122968)
/gene="argC"
/locus_tag="YPTS_0115"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature 123218..123664
/gene="argC"
/locus_tag="YPTS_0115"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; cl15856"
/db_xref="CDD:210256"
gene complement(123629..123838)
/locus_tag="YPTS_0116"
/db_xref="GeneID:6260621"
CDS complement(123629..123838)
/locus_tag="YPTS_0116"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870572.1"
/db_xref="GI:186893460"
/db_xref="GeneID:6260621"
/translation="MAHNLFTAIYFLQSINYNQSLTINHLQSIACNRTLQQGLRFREA
KTDIHTLYGLSRSTFQQVIFGGNNN"
gene 123916..124692
/locus_tag="YPTS_0117"
/db_xref="GeneID:6260622"
CDS 123916..124692
/locus_tag="YPTS_0117"
/note="catalyzes the phosphorylation of
N-acetyl-L-glutamate to form N-acetyl-L-glutamate
5-phosphate"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_001870573.1"
/db_xref="GI:186893461"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR004662"
/db_xref="GeneID:6260622"
/translation="MMNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGG
GCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGL
CLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVN
ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKV
NAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV"
misc_feature 123928..124683
/locus_tag="YPTS_0117"
/note="AAK_NAGK-NC: N-Acetyl-L-glutamate kinase -
noncyclic (NAGK-NC) catalyzes the phosphorylation of the
gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in
the second step of microbial arginine biosynthesis using
the acetylated, noncyclic route of...; Region:
AAK_NAGK-NC; cd04249"
/db_xref="CDD:58615"
misc_feature order(123937..123939,123943..123948,124045..124050,
124453..124455,124471..124473,124540..124542,
124546..124548,124564..124566)
/locus_tag="YPTS_0117"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58615"
misc_feature order(124045..124050,124111..124113,124387..124392,
124396..124398)
/locus_tag="YPTS_0117"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58615"
gene 124859..126232
/locus_tag="YPTS_0118"
/db_xref="GeneID:6260623"
CDS 124859..126232
/locus_tag="YPTS_0118"
/note="catalyzes the formation of arginine from
(N-L-arginino)succinate"
/codon_start=1
/transl_table=11
/product="argininosuccinate lyase"
/protein_id="YP_001870574.1"
/db_xref="GI:186893462"
/db_xref="InterPro:IPR000362"
/db_xref="InterPro:IPR003031"
/db_xref="InterPro:IPR009049"
/db_xref="GeneID:6260623"
/translation="MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKAL
VTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKK
LHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRA
QPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGF
ASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSG
SSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALNT
WLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAV
VEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIA
EAKARLF"
misc_feature 124859..126223
/locus_tag="YPTS_0118"
/note="argininosuccinate lyase; Provisional; Region:
PRK04833"
/db_xref="CDD:179883"
misc_feature 124922..126226
/locus_tag="YPTS_0118"
/note="Argininosuccinate lyase (argininosuccinase, ASAL);
Region: Argininosuccinate_lyase; cd01359"
/db_xref="CDD:176463"
misc_feature order(124922..124924,124934..124936,125105..125107,
125111..125113,125180..125188,125195..125197,
125321..125326,125552..125554,125681..125683,
125687..125689,125711..125713,125717..125719,
125726..125728,125807..125809,125813..125815,
125822..125824,125828..125833)
/locus_tag="YPTS_0118"
/note="active sites [active]"
/db_xref="CDD:176463"
misc_feature order(125150..125152,125159..125161,125168..125173,
125318..125341,125357..125359,125369..125374,
125390..125392,125399..125404,125411..125413,
125423..125425,125456..125470,125474..125476,
125483..125485,125525..125539,125546..125551,
125555..125557,125567..125569,125576..125578,
125588..125590,125597..125602,125606..125611,
125618..125623,125636..125641,125648..125650,
125672..125674,125690..125701,125705..125713,
125717..125719,125726..125731,125735..125752,
125756..125764,125771..125773,125777..125785,
125807..125818,125825..125827,125834..125836,
125867..125869,125876..125878,125957..125959,
125972..125974,125984..125986,125999..126004,
126011..126013,126020..126022,126158..126160,
126164..126178,126200..126202)
/locus_tag="YPTS_0118"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176463"
gene 126831..129323
/locus_tag="YPTS_0119"
/db_xref="GeneID:6260624"
CDS 126831..129323
/locus_tag="YPTS_0119"
/note="TIGRFAM: TonB-dependent
hemoglobin/transferrin/lactoferrin family receptor;
TonB-dependent heme/hemoglobin receptor family protein;
PFAM: TonB-dependent receptor; TonB-dependent receptor
plug;
KEGG: yps:YPTB0113 putative TonB dependent receptor
protein"
/codon_start=1
/transl_table=11
/product="TonB-dependent heme/hemoglobin receptor family
protein"
/protein_id="YP_001870575.1"
/db_xref="GI:186893463"
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR010949"
/db_xref="InterPro:IPR011276"
/db_xref="InterPro:IPR012910"
/db_xref="GeneID:6260624"
/translation="MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTN
NNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYS
SVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIE
RGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALG
NPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQL
AKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVEN
RNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQN
TNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDD
WLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPAT
MRWDVDRREQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVL
PNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFG
GDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQ
SVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRL
DFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIEN
ITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF"
misc_feature 127011..129320
/locus_tag="YPTS_0119"
/note="TonB-dependent heme/hemoglobin receptor family
protein; Region: TonB-hemin; TIGR01785"
/db_xref="CDD:162536"
misc_feature 127047..129320
/locus_tag="YPTS_0119"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature order(127047..127076,127104..127133,127167..127184,
127206..127229,127281..127313,127347..127373)
/locus_tag="YPTS_0119"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature order(127908..127910,127977..127979)
/locus_tag="YPTS_0119"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene 129551..130168
/locus_tag="YPTS_0120"
/db_xref="GeneID:6260625"
CDS 129551..130168
/locus_tag="YPTS_0120"
/note="KEGG: yps:YPTB0114 extracellular heme acquisition
hemophore HasA"
/codon_start=1
/transl_table=11
/product="extracellular heme acquisition hemophore HasA"
/protein_id="YP_001870576.1"
/db_xref="GI:186893464"
/db_xref="InterPro:IPR010495"
/db_xref="GeneID:6260625"
/translation="MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFS
GSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGG
PSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKA
KGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVMDSNDMLLAA"
misc_feature 129551..130165
/locus_tag="YPTS_0120"
/note="Heme-binding protein A (HasA); Region: HasA;
pfam06438"
/db_xref="CDD:203450"
gene 130334..132142
/locus_tag="YPTS_0121"
/db_xref="GeneID:6260626"
CDS 130334..132142
/locus_tag="YPTS_0121"
/note="KEGG: yps:YPTB0115 ABC transporter protein, fused
permease and ATP binding domains;
TIGRFAM: type I secretion system ATPase;
PFAM: ABC transporter related;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="type I secretion system ATPase"
/protein_id="YP_001870577.1"
/db_xref="GI:186893465"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR010128"
/db_xref="InterPro:IPR011527"
/db_xref="GeneID:6260626"
/translation="MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAP
AIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQ
PVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHP
WLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGML
KALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITA
GVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQG
KLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPAFSG
TVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLAD
VHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGE
QALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKD
KPAVQPEAKIRNSRSGWSNGVSYGIGPARTTSSPKP"
misc_feature 130340..132073
/locus_tag="YPTS_0121"
/note="ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only]; Region: ArpD; COG4618"
/db_xref="CDD:34241"
misc_feature 131339..131980
/locus_tag="YPTS_0121"
/note="This family represents the ABC component of the
protease secretion system PrtD, a 60-kDa integral membrane
protein sharing 37% identity with HlyB, the ABC component
of the alpha-hemolysin secretion pathway, in the
C-terminal domain. They export...; Region:
ABCC_Protease_Secretion; cd03246"
/db_xref="CDD:73005"
misc_feature 131441..131464
/locus_tag="YPTS_0121"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73005"
misc_feature order(131450..131455,131459..131467,131585..131587,
131822..131827,131921..131923)
/locus_tag="YPTS_0121"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73005"
misc_feature 131576..131587
/locus_tag="YPTS_0121"
/note="Q-loop/lid; other site"
/db_xref="CDD:73005"
misc_feature 131750..131779
/locus_tag="YPTS_0121"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73005"
misc_feature 131810..131827
/locus_tag="YPTS_0121"
/note="Walker B; other site"
/db_xref="CDD:73005"
misc_feature 131834..131845
/locus_tag="YPTS_0121"
/note="D-loop; other site"
/db_xref="CDD:73005"
misc_feature 131909..131929
/locus_tag="YPTS_0121"
/note="H-loop/switch region; other site"
/db_xref="CDD:73005"
gene 132218..133546
/locus_tag="YPTS_0122"
/db_xref="GeneID:6260627"
CDS 132218..133546
/locus_tag="YPTS_0122"
/note="TIGRFAM: type I secretion membrane fusion protein,
HlyD family;
PFAM: secretion protein HlyD family protein;
KEGG: yps:YPTB0116 HlyD family secretion protein"
/codon_start=1
/transl_table=11
/product="HlyD family type I secretion membrane fusion
protein"
/protein_id="YP_001870578.1"
/db_xref="GI:186893466"
/db_xref="InterPro:IPR003997"
/db_xref="InterPro:IPR006143"
/db_xref="InterPro:IPR006144"
/db_xref="InterPro:IPR010129"
/db_xref="GeneID:6260627"
/translation="MLPESACYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLW
AGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAI
RNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLH
HRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGYIA
KNKLLEMESQLTSLQARVEQGTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQ
QNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPIGQPL
FVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYP
LTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE"
misc_feature 132347..133543
/locus_tag="YPTS_0122"
/note="type I secretion membrane fusion protein, HlyD
family; Region: type_I_hlyD; TIGR01843"
/db_xref="CDD:130902"
misc_feature 132422..132547
/locus_tag="YPTS_0122"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 133106..133444
/locus_tag="YPTS_0122"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 133611..134414
/locus_tag="YPTS_0123"
/db_xref="GeneID:6260628"
CDS 133611..134414
/locus_tag="YPTS_0123"
/note="TIGRFAM: TonB family protein;
KEGG: yps:YPTB0117 putative TonB protein"
/codon_start=1
/transl_table=11
/product="TonB family protein"
/protein_id="YP_001870579.1"
/db_xref="GI:186893467"
/db_xref="InterPro:IPR006260"
/db_xref="GeneID:6260628"
/translation="MNRLQQSSEKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSY
PAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRINQPDDIVDLPTLPEQPEGQ
REITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAV
NSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQL
SNSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK"
misc_feature 133617..134405
/locus_tag="YPTS_0123"
/note="Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane];
Region: TonB; COG0810"
/db_xref="CDD:31152"
misc_feature 134166..134402
/locus_tag="YPTS_0123"
/note="Gram-negative bacterial tonB protein; Region: TonB;
pfam03544"
/db_xref="CDD:202680"
gene complement(134530..135993)
/locus_tag="YPTS_0124"
/db_xref="GeneID:6260629"
CDS complement(134530..135993)
/locus_tag="YPTS_0124"
/note="Catalyzes the oxidation of dihydrolipoamide to
lipoamide"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide dehydrogenase"
/protein_id="YP_001870580.1"
/db_xref="GI:186893468"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000815"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR002218"
/db_xref="InterPro:IPR004099"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:6260629"
/translation="MKTLNVDVAVIGGGTAGLGAYRAAKLLTPNVVMIEGGEYGTTCA
RVGCMPSKLLIAAAEAVHQIEKAPGFGIHPQGKPLINGREVMDRVKRERDRFVGFVLE
GVETIPAADKIQGYARFIDDNTLQVDDHTQLTSQKIIAQRIVIATGSHPSWPASWNEL
GDRLIINDDVFNWDDLPESVAVFGPGVIGLELGQALHRLGVQVKMFGVGGAVGPLTDS
IVRDYAAKTLGDEFYLDPDVKVELMQREGDKVFIRYLDKSGRPQEIMVDYVLAATGRR
PNVDKLGLENTSLILDERGVPQADRLTMQTNVPHIFIAGDASNQLPLLHEASDQARIA
GVNAGGFPEVVPGLRRSPISVVFSDPQIAMVGATFRELAQKFSACGCFEIGEVSFENQ
GRSRVMLKNKGILRIYGEQGTGRFLGAEMMGPSAEHIAHLLAWAHQQQMTIDQMLDMP
FYHPVIEEGLRTALRDLQSKLKLGADEAERCLRCPGE"
misc_feature complement(134572..135987)
/locus_tag="YPTS_0124"
/note="dihydrolipoamide dehydrogenase; Validated; Region:
PRK06292"
/db_xref="CDD:180516"
misc_feature complement(<135310..135459)
/locus_tag="YPTS_0124"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(134605..134934)
/locus_tag="YPTS_0124"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene complement(136087..136818)
/locus_tag="YPTS_0125"
/db_xref="GeneID:6260630"
CDS complement(136087..136818)
/locus_tag="YPTS_0125"
/EC_number="1.11.1.15"
/note="TIGRFAM: glutaredoxin-family domain protein;
PFAM: alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen; glutaredoxin; Redoxin domain
protein;
KEGG: ypi:YpsIP31758_0136 hybrid peroxiredoxin hyPrx5"
/codon_start=1
/transl_table=11
/product="glutaredoxin family protein"
/protein_id="YP_001870581.1"
/db_xref="GI:186893469"
/db_xref="InterPro:IPR000866"
/db_xref="InterPro:IPR002109"
/db_xref="InterPro:IPR011767"
/db_xref="InterPro:IPR011906"
/db_xref="InterPro:IPR013740"
/db_xref="InterPro:IPR014025"
/db_xref="GeneID:6260630"
/translation="MFTSQEGKKVPQVTFHTRQGDQWIDVTTDDLFSNKTVIVFSLPG
AFTPTCSSSHLPRYNELAGVFKQHGVDSILCVSVNDTFVMNAWKSDQHAENITFVPDG
NGEFTKGMNMLVEKADLGFGPRSWRYSMLVRNGVVEKMFVEPNKPGDPFEVSDADTML
KYLAPDFKVQESVAVFTKPGCPFCAKAKQMLQDHGLQYEEIVLGKDATTVSLRAVSGR
STVPQIFIGGRHIGGSDDLEKYLPA"
misc_feature complement(136336..136803)
/locus_tag="YPTS_0125"
/note="Peroxiredoxin (PRX) family, PRX5-like subfamily;
members are similar to the human protein, PRX5, a
homodimeric TRX peroxidase, widely expressed in tissues
and found cellularly in mitochondria, peroxisomes and the
cytosol. The cellular location of PRX5...; Region:
PRX5_like; cd03013"
/db_xref="CDD:48562"
misc_feature complement(<136375..136800)
/locus_tag="YPTS_0125"
/note="Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones]; Region: AhpC; COG0450"
/db_xref="CDD:30799"
misc_feature complement(order(136438..136440,136669..136671,
136678..136680))
/locus_tag="YPTS_0125"
/note="catalytic triad [active]"
/db_xref="CDD:48562"
misc_feature complement(order(136447..136449,136510..136515,
136573..136575,136579..136581,136675..136677))
/locus_tag="YPTS_0125"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48562"
misc_feature complement(136096..136308)
/locus_tag="YPTS_0125"
/note="Glutaredoxin (GRX) family, PRX5 hybrid subfamily;
composed of hybrid proteins containing peroxiredoxin (PRX)
and GRX domains, which is found in some pathogenic
bacteria and cyanobacteria. PRXs are thiol-specific
antioxidant (TSA) proteins that confer a...; Region:
GRX_hybridPRX5; cd03029"
/db_xref="CDD:48578"
misc_feature complement(order(136156..136161,136270..136278,
136285..136287))
/locus_tag="YPTS_0125"
/note="GSH binding site [chemical binding]; other site"
/db_xref="CDD:48578"
misc_feature complement(order(136267..136269,136276..136278))
/locus_tag="YPTS_0125"
/note="catalytic residues [active]"
/db_xref="CDD:48578"
gene 136965..137882
/locus_tag="YPTS_0126"
/db_xref="GeneID:6260631"
CDS 136965..137882
/locus_tag="YPTS_0126"
/note="Activates the expression of a regulon of hydrogen
peroxide-inducible genes such as katG, gor, ahpC, ahpF,
oxyS, dps, fur and grxA"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator OxyR"
/protein_id="YP_001870582.1"
/db_xref="GI:186893470"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:6260631"
/translation="MNIRDLEYLVALAEFRHFRRAADSCHVSQPTLSGQIRKLEDELG
IMLLERTSRKVLFTQAGLLLVEQAKTVLREVKVLKEMASLQGESMSGPLHIGLIPTVG
PYLLPQIIPMLHKTFPKLEMYLHEAQTQNLLAQLDSGKLDCAILALVKETEAFIEIPL
FDEPMNLAIYADHPWANRERVEMHELAGEKLLMLEDGHCLRDQAMGFCFQAGADEDTH
FRATSLETLRNMVAAGSGITLLPALAVPNERQRDGVCYLECYKPVPKRTIALVYRPGS
PLRGRYEQLAEAIRDHMQERMASSLEQAI"
misc_feature 136965..137879
/locus_tag="YPTS_0126"
/note="DNA-binding transcriptional regulator OxyR;
Provisional; Region: PRK11151"
/db_xref="CDD:182999"
misc_feature 136971..137147
/locus_tag="YPTS_0126"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 137235..137831
/locus_tag="YPTS_0126"
/note="The C-terminal substrate-binding domain of the
LysR-type transcriptional regulator OxyR, a member of the
type 2 periplasmic binding fold protein superfamily;
Region: PBP2_OxyR; cd08411"
/db_xref="CDD:176103"
misc_feature order(137271..137273,137280..137285,137292..137294,
137304..137306,137328..137342,137619..137621,
137628..137633,137640..137642,137649..137654,
137658..137663)
/locus_tag="YPTS_0126"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176103"
gene complement(137865..139265)
/locus_tag="YPTS_0127"
/db_xref="GeneID:6260632"
CDS complement(137865..139265)
/locus_tag="YPTS_0127"
/note="catalyzes the conversion of NADPH to NADH"
/codon_start=1
/transl_table=11
/product="soluble pyridine nucleotide transhydrogenase"
/protein_id="YP_001870583.1"
/db_xref="GI:186893471"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000759"
/db_xref="InterPro:IPR000815"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR004099"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:6260632"
/translation="MQQHFHFDAIVIGSGPGGEGAAMGLVKQGARVAVIERYNNVGGG
CTHWGTIPSKALRHAVSRIIEFNQNPLYSDNARTIKSSFADILNHADRVINQQTRMRQ
GFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYRPVNVDFNH
ERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQE
MSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTS
GLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMI
KGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMD
TGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTM
AEAYRVAALNGLNRLF"
misc_feature complement(137868..139262)
/locus_tag="YPTS_0127"
/note="soluble pyridine nucleotide transhydrogenase;
Provisional; Region: PRK05249"
/db_xref="CDD:179973"
misc_feature complement(138489..138734)
/locus_tag="YPTS_0127"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(137892..138230)
/locus_tag="YPTS_0127"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene 139355..139450
/locus_tag="YPTS_0128"
/db_xref="GeneID:6260633"
CDS 139355..139450
/locus_tag="YPTS_0128"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870584.1"
/db_xref="GI:186893472"
/db_xref="GeneID:6260633"
/translation="MCVVKSQFGIEKIRLYNGCYRKVWYIADYMS"
gene 139483..140118
/locus_tag="YPTS_0129"
/db_xref="GeneID:6260634"
CDS 139483..140118
/locus_tag="YPTS_0129"
/note="negatively controls the expression of fabA and
fabB, genes involved in the unsaturated fatty acid
biosynthesis"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional repressor FabR"
/protein_id="YP_001870585.1"
/db_xref="GI:186893473"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:6260634"
/translation="MGVRAQQKERTRRSLIEAAFSQLSAERSFASLSLREVSREAGIA
PTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNN
PNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRSFTEAQAEAMVTI
VFSAGAEVLDVDIEQRRQLEERLVLQLRMISKGAYYWYRREQEKLAASRVE"
misc_feature 139483..140088
/locus_tag="YPTS_0129"
/note="DNA-binding transcriptional repressor FabR;
Provisional; Region: PRK11202"
/db_xref="CDD:183037"
misc_feature 139525..139656
/locus_tag="YPTS_0129"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 140131..140538
/locus_tag="YPTS_0130"
/db_xref="GeneID:6260635"
CDS 140131..140538
/locus_tag="YPTS_0130"
/note="PFAM: protein of unknown function DUF1422;
KEGG: ypi:YpsIP31758_0140 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870586.1"
/db_xref="GI:186893474"
/db_xref="InterPro:IPR009867"
/db_xref="GeneID:6260635"
/translation="MEQSSRRETGTLLLALITGLAINGVCAALFSALVPFSVFPLLTL
ILAVYCLHQRYLNFAMPQGIPVLASACFLLGILLYSAIVRVEYPAIGSNFVPAVLSVV
LVFWILFKLRTRKSVQTHTDADIDINNSDQPQQ"
misc_feature 140131..140490
/locus_tag="YPTS_0130"
/note="hypothetical protein; Provisional; Region:
PRK11056"
/db_xref="CDD:182932"
gene complement(140672..141775)
/locus_tag="YPTS_0131"
/db_xref="GeneID:6260636"
CDS complement(140672..141775)
/locus_tag="YPTS_0131"
/EC_number="2.1.1.35"
/note="catalyzes the formation of 5-methyl-uridine at
position 54 in all tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA (uracil-5-)-methyltransferase"
/protein_id="YP_001870587.1"
/db_xref="GI:186893475"
/db_xref="InterPro:IPR010280"
/db_xref="InterPro:IPR011869"
/db_xref="GeneID:6260636"
/translation="MTPNILPIESYDHQLAEKSARLKAMMLPFQAPEPEIFRSPADHY
RMRAEFRVWHDEDDLYHIMFDQQTKQRIRVEQFPVASRLINRLMDALMTAIRAEPLLR
RKLFQIDYLSTLSGKLIASLLYHRQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTK
IMLDHDYIDEVLPVAGREMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGDLLELY
CGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQG
VREFNRLKGIDLGSYNCETIFVDPPRSGLDHETVKLVQAYPRILYISCNPETLCANLE
QLQHTHKISRLALFDQFPYTHHMECGVLLEKRH"
misc_feature complement(140678..141775)
/locus_tag="YPTS_0131"
/note="tRNA (uracil-5-)-methyltransferase; Validated;
Region: PRK05031"
/db_xref="CDD:179917"
misc_feature complement(140678..141748)
/locus_tag="YPTS_0131"
/note="tRNA (uracil-5-)-methyltransferase; Region:
trmA_only; TIGR02143"
/db_xref="CDD:131198"
gene 142237..144129
/gene="btuB"
/locus_tag="YPTS_0132"
/db_xref="GeneID:6260637"
CDS 142237..144129
/gene="btuB"
/locus_tag="YPTS_0132"
/note="involved in the active translocation of vitamin B12
(cyanocobalamin) across the outer membrane to the
periplasmic space"
/codon_start=1
/transl_table=11
/product="vitamin B12/cobalamin outer membrane
transporter"
/protein_id="YP_001870588.1"
/db_xref="GI:186893476"
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR010101"
/db_xref="InterPro:IPR010917"
/db_xref="InterPro:IPR012910"
/db_xref="GeneID:6260637"
/translation="MIIKNTMTIKKYTLLTALSVTAFSGWAQGNNTTDNNNEMVVTAN
RFPQPKSSVLAPVDVVTRADIDRWQSTNINDVLRRLPGINIAQYGGPRQLSSLFIRGT
NSSHVLVLVDGVRLNQAGISGSSDLSQIPISLVQRIEYIRGPRSAVYGSDAIGGVVNI
ITERETLGSTLTAGLGSNGYQNYNGSTQQKLGDDTTITLAGNYDYSKGYDVVAKGNTG
MASQPDRDGYLGKMLWLGANHKFNEQFSGFVRGYGFDNRSDYDSYYYPGSPLVDTRSL
SSRTYDTGINFSNGGYASQLIGSYSRTQDYNYDPSYGRYDQSATLDDISQYNLQWTNT
YQLGLGNVGGGLDWQKQTTEPGTNYLSNGYEQRNTGVYGTVQQFVGPVTLEGAIRGDD
NSQFGWHTTWQSSAGWEFVDGYRLIGSYGTAFKAPNLGQIYSSTYGNRDLKPEESTQW
EAAITGITGPLDWRLSAYRNDIDQMIATRGVYPNSRYYNVEKATIKGVEWTGSFETGP
LSHQVTLEYLDPRNADTHEILARRAKQQVKYQLDWQMADLDWSVTYQYIGQRYDSVFD
PITYAASPVKLAGISLWDLAVSYPVTSHLTVRGRIANLFDKDYEMVYGYQTPGREYYF
TGSYNF"
misc_feature 142258..144126
/gene="btuB"
/locus_tag="YPTS_0132"
/note="vitamin B12/cobalamin outer membrane transporter;
Provisional; Region: btuB; PRK10641"
/db_xref="CDD:182610"
misc_feature 142402..144126
/gene="btuB"
/locus_tag="YPTS_0132"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature order(142402..142431,142459..142488,142525..142542,
142561..142584,142630..142662,142696..142722)
/gene="btuB"
/locus_tag="YPTS_0132"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature order(143149..143151,143230..143232)
/gene="btuB"
/locus_tag="YPTS_0132"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene 144074..144937
/locus_tag="YPTS_0133"
/db_xref="GeneID:6260638"
CDS 144074..144937
/locus_tag="YPTS_0133"
/EC_number="5.1.1.3"
/note="converts L-glutamate to D-glutamate, a component of
peptidoglycan"
/codon_start=1
/transl_table=11
/product="glutamate racemase"
/protein_id="YP_001870589.1"
/db_xref="GI:186893477"
/db_xref="InterPro:IPR001920"
/db_xref="InterPro:IPR004391"
/db_xref="InterPro:IPR015942"
/db_xref="GeneID:6260638"
/translation="MATKPQDANTTSREAITSKADSPPRPTALIFDSGVGGLSVYQEI
RQLLPNLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQSHPLAIVVIACNTASTV
SLPALRERFAFPVVGVVPAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCK
IELLGSSELVEAAETKLHGGVVPLEVLKKILHPWLSMREPPDTIVLGCTHFPLLTEEL
AQVLPEGTRMVDSGAAIARRTAWLISSQENVISSQDENIAYCMALDEDTDALLPVLQS
YGFPKLQKLPI"
misc_feature 144134..144928
/locus_tag="YPTS_0133"
/note="glutamate racemase; Provisional; Region: PRK00865"
/db_xref="CDD:179146"
gene 145401..146935
/locus_tag="YPTS_R0084"
/db_xref="GeneID:6260639"
rRNA 145401..146935
/locus_tag="YPTS_R0084"
/product="16S ribosomal RNA"
/db_xref="GeneID:6260639"
gene 147073..147148
/locus_tag="YPTS_R0001"
/note="tRNA-Glu1"
/db_xref="GeneID:6260640"
tRNA 147073..147148
/locus_tag="YPTS_R0001"
/product="tRNA-Glu"
/db_xref="GeneID:6260640"
gene 147401..150307
/locus_tag="YPTS_R0092"
/db_xref="GeneID:6260641"
rRNA 147401..150307
/locus_tag="YPTS_R0092"
/product="23S ribosomal RNA"
/db_xref="GeneID:6260641"
gene 150419..150534
/locus_tag="YPTS_R0098"
/db_xref="GeneID:9679779"
rRNA 150419..150534
/locus_tag="YPTS_R0098"
/product="5S ribosomal RNA"
/db_xref="GeneID:9679779"
gene 150659..150735
/locus_tag="YPTS_R0002"
/note="tRNA-Asp1"
/db_xref="GeneID:6260642"
tRNA 150659..150735
/locus_tag="YPTS_R0002"
/product="tRNA-Asp"
/db_xref="GeneID:6260642"
gene 150744..150819
/locus_tag="YPTS_R0003"
/note="tRNA-Trp1"
/db_xref="GeneID:6260643"
tRNA 150744..150819
/locus_tag="YPTS_R0003"
/product="tRNA-Trp"
/db_xref="GeneID:6260643"
gene 151802..152758
/locus_tag="YPTS_0136"
/db_xref="GeneID:6260644"
CDS 151802..152758
/locus_tag="YPTS_0136"
/note="PFAM: periplasmic binding protein/LacI
transcriptional regulator;
KEGG: yps:YPTB0127 ABC transporter, periplasmic
ribose/sugar binding protein"
/codon_start=1
/transl_table=11
/product="periplasmic binding protein/LacI transcriptional
regulator"
/protein_id="YP_001870590.1"
/db_xref="GI:186893478"
/db_xref="InterPro:IPR001761"
/db_xref="GeneID:6260644"
/translation="MYRRLLLAAAVTAAMCSAVQAAPLVVGFSQIGSESGWRSAETKV
AKQEAEKRGITLKIADAQQKQENQIKAVRSFIAQGVDAIFIAPVVATGWTPVLQEAKE
AKIPVFLLDRMIEVNDPSLYTAAVASDSVYEGKVAGEWLLQDVVGKPCNVVELQGTVG
SSVAINRKKGFADGIASAPGVKIIRSQSGDFTRSKGKEVMESFIKAEQNGKNICAVYA
HNDDMAIGAIQAIKEAGLKPGSDIKIVSIDGVPDIFKAMSSGEANATVELTPNMAGPA
LDALIVLKKDGTQPPKFIQTESRLLQPDTAKQEYELKKSLGY"
misc_feature 151874..152695
/locus_tag="YPTS_0136"
/note="Periplasmic binding domain of ABC-type YtfQ-like
transport systems; Region: PBP1_YtfQ_like; cd06309"
/db_xref="CDD:107304"
misc_feature 151877..152599
/locus_tag="YPTS_0136"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
misc_feature order(151910..151912,152132..152134,152300..152302,
152543..152545,152603..152605)
/locus_tag="YPTS_0136"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107304"
gene 152844..154334
/locus_tag="YPTS_0137"
/db_xref="GeneID:6260645"
CDS 152844..154334
/locus_tag="YPTS_0137"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: ypi:YpsIP31758_0148 putative sugar ABC transporter,
periplasmic sugar-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001870591.1"
/db_xref="GI:186893479"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6260645"
/translation="MEILLEVRGLSVEFPGVKALDSVDFSLQRGEVVALLGENGAGKS
TLIKALTGVYKRSAGEVLLDGKAVCPIDTADAQLMGIGTVYQEVNLLPNISVAANLFI
GREPLRWGLIDHNKMNQQAAKLLTGYGLTLDVQQPLANFSIAIQQIVAIARAVDLSAK
VLILDEPTASLDAKEVSMLLDILCQLRDQGIGMVFVTHFLDQVYRISDRITVLRNGKL
VGTKTVAELPRIELVQMMLGHSFDEQLLKRGEHSITNKNPLVEFKNYGRRGVVENFDL
SVSPGEIVGLAGLLGSGRTETAQLIFGITTPDTGEAKIQGKPVKIRTPRKASKFGFGY
CPEDRKTEGIVGAATVRENIILALQAQRGWLRPLSMREQTQIADDFIQQLGIRTPSPE
QQIQYLSGGNQQKVLLARWLATKPRFLILDEPTRGIDVGAHAEIIRLIEKLCDEGLAL
LIISSELEELAGYADRVIVLRDRRHVAQLDHDEISVPAIMQAIAVQ"
misc_feature 152844..154331
/locus_tag="YPTS_0137"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature 152856..153506
/locus_tag="YPTS_0137"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature 152952..152975
/locus_tag="YPTS_0137"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature order(152961..152966,152970..152978,153228..153230,
153336..153341,153435..153437)
/locus_tag="YPTS_0137"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature order(153090..153095,153225..153230)
/locus_tag="YPTS_0137"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature 153231..153260
/locus_tag="YPTS_0137"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature 153324..153341
/locus_tag="YPTS_0137"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature 153348..153359
/locus_tag="YPTS_0137"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature 153423..153443
/locus_tag="YPTS_0137"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature 153615..154265
/locus_tag="YPTS_0137"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 154367..155365
/locus_tag="YPTS_0138"
/db_xref="GeneID:6260646"
CDS 154367..155365
/locus_tag="YPTS_0138"
/EC_number="3.6.3.17"
/note="PFAM: inner-membrane translocator;
KEGG: ypi:YpsIP31758_0149 putative sugar ABC transporter,
permease protein"
/codon_start=1
/transl_table=11
/product="inner-membrane translocator"
/protein_id="YP_001870592.1"
/db_xref="GI:186893480"
/db_xref="InterPro:IPR001851"
/db_xref="GeneID:6260646"
/translation="MTQRPRKVKWVLPKGATQFGALAVILLIDSLVAPHFFSIHIQDG
RLFGSIIDILNRGAPVALLALGMTLVIATGGIDLSVGAVMAIAGATAATLTSAGYPFM
TVLALSLAVGALCGLWNGFLVAVLQIQPIVATLMLMVAGRGIAQLITEGQIVTFDSGG
LATLGSSTLMYLPMSVVIACSMLILVWLLTRKTALGLFIESVGINLRSARNAGVSTRL
VLIAVYVICGVCAAVAGIIVTADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNL
LLSVIGALIIQGMNTGILLSGYQPEFNLVLKAIVVLAVLVVQSPMISLSHLFQRRK"
misc_feature 154538..155257
/locus_tag="YPTS_0138"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 154985..155041
/locus_tag="YPTS_0138"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 155365..156357
/locus_tag="YPTS_0139"
/db_xref="GeneID:6260647"
CDS 155365..156357
/locus_tag="YPTS_0139"
/EC_number="3.6.3.17"
/note="membrane component of a putative sugar ABC
transporter system"
/codon_start=1
/transl_table=11
/product="inner membrane ABC transporter permease YjfF"
/protein_id="YP_001870593.1"
/db_xref="GI:186893481"
/db_xref="InterPro:IPR001851"
/db_xref="GeneID:6260647"
/translation="MLKRNVPLLITIAVFILGYAFCLSQFPSFSSSRVWCDLLTDNAF
LGIVAVGMTFVILSGGIDLSVGSVIAFTGVLLAKLIGTYGIHPVYAFAIVLVMGAMFG
ALMGWIIDSLKLPAFIITLAGMFFIRGMSFIVSEESLPINHPIYETLANYAWRVPGGG
RFTLLAFIMLMVVAFGILLAHHTRFGHNVYAIGGNSVSAGLMGVPVRRTTIKIYMLSS
TLAALSGIVFSLYTSAGYALAASGVELDAIAAVVIGGTLLAGGIGTVFGTLFGVLIQG
LIQSYITFDGTLSSWWTKIVIGILLFSFIVIQKAMSAFYLNRRSRPQSSPLTPV"
misc_feature 155488..156288
/locus_tag="YPTS_0139"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 155953..156009
/locus_tag="YPTS_0139"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(156344..157225)
/locus_tag="YPTS_0140"
/db_xref="GeneID:6260648"
CDS complement(156344..157225)
/locus_tag="YPTS_0140"
/note="Negatively regulates the transcription of the
flagellar master operon flhDC by binding to the upstream
region of the operon"
/codon_start=1
/transl_table=11
/product="transcriptional regulator HdfR"
/protein_id="YP_001870594.1"
/db_xref="GI:186893482"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:6260648"
/translation="MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLG
ANLFTRHRNNIRLTPAGERLVPYAEMLLNTWRLAKKEVIHSLQHTELSIGATASLWEA
YLTPWLQQLYEQQEELRLEARIALRNSLVKQLHERQLDLLITTEPPKMDELACLLLGH
FSLRLYSSFSLDLPKEDDTPNEHKNASEVPYIKLEWGADFHQQENRLLDSEQAPILTT
TSAHLTRQLLETTGGCAFLPEHWQKEYPQLVIHPDIPPIVRPLYAVWLQNSDQQALIR
QLLKTPMNNATQSVTRE"
misc_feature complement(156365..157225)
/locus_tag="YPTS_0140"
/note="transcriptional regulator HdfR; Provisional;
Region: PRK03601"
/db_xref="CDD:179604"
misc_feature complement(157040..157216)
/locus_tag="YPTS_0140"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(156386..156958)
/locus_tag="YPTS_0140"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature complement(order(156536..156541,156545..156550,
156566..156583,156854..156874,156878..156880,
156890..156892,156899..156904,156908..156913))
/locus_tag="YPTS_0140"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 157344..157682
/locus_tag="YPTS_0141"
/db_xref="GeneID:6260649"
CDS 157344..157682
/locus_tag="YPTS_0141"
/note="PFAM: protein of unknown function DUF413;
KEGG: ypi:YpsIP31758_0152 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870595.1"
/db_xref="GI:186893483"
/db_xref="InterPro:IPR007335"
/db_xref="GeneID:6260649"
/translation="MADSFITTNRFFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNE
LDSGKREPVTEEEQRFVAVCRGEREPVSAEEKVWSKYVIRTRQPKRFHTLSGGKPQMD
AVEDYTDSDD"
misc_feature 157344..157679
/locus_tag="YPTS_0141"
/note="hypothetical protein; Provisional; Region:
PRK11027"
/db_xref="CDD:182911"
gene complement(158062..159585)
/locus_tag="YPTS_0142"
/db_xref="GeneID:6260650"
CDS complement(158062..159585)
/locus_tag="YPTS_0142"
/note="KEGG: ypi:YpsIP31758_0153 Mg chelatase-like
protein;
TIGRFAM: Mg chelatase, subunit ChlI;
PFAM: magnesium chelatase ChlI subunit; ATPase associated
with various cellular activities AAA_5;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="Mg chelatase subunit ChlI"
/protein_id="YP_001870596.1"
/db_xref="GI:186893484"
/db_xref="InterPro:IPR000523"
/db_xref="InterPro:IPR001208"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004482"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:6260650"
/translation="MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKE
ARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGRYDLPIALAILAASEQIPADKLA
HYEFLGELALSGALRRVSGAIPAALACSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENTLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLG
PPGTGKTMLATRLTGLLPPLTDQEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASM
AALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLESGEIIISRAAAKIC
FPAKVQLIAAMNPSPSGHYQGIHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAG
MLGAQKNQGESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQ
VLLTLGLSVRAWHHILKVARTIADLAQEKTIQKSHLSEALSYRCMDRLLLQLHKSLM"
misc_feature complement(158068..159585)
/locus_tag="YPTS_0142"
/note="putative ATP-dependent protease; Provisional;
Region: PRK09862"
/db_xref="CDD:182120"
misc_feature complement(159160..159525)
/locus_tag="YPTS_0142"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature complement(158404..159018)
/locus_tag="YPTS_0142"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase; pfam01078"
/db_xref="CDD:144608"
misc_feature complement(158107..158388)
/locus_tag="YPTS_0142"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:205515"
gene 160209..161855
/locus_tag="YPTS_0143"
/db_xref="GeneID:6260651"
CDS 160209..161855
/locus_tag="YPTS_0143"
/note="catalyzes the formation of 2-acetolactate from
pyruvate; also known as acetolactate synthase large
subunit"
/codon_start=1
/transl_table=11
/product="acetolactate synthase 2 catalytic subunit"
/protein_id="YP_001870597.1"
/db_xref="GI:186893485"
/db_xref="InterPro:IPR000399"
/db_xref="InterPro:IPR011766"
/db_xref="InterPro:IPR012000"
/db_xref="InterPro:IPR012001"
/db_xref="InterPro:IPR012846"
/db_xref="GeneID:6260651"
/translation="MNGAQWVVQALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLC
RHEQGAAIAAIGYARATGKVGVCIATSGPGATNLITGLADALLDSVPVIAITGQVGSA
LIGTDAFQEIDVLGLSLACTKHSFLVESLDALPEIMAEAFAIATSGRPGPVLIDIPKD
IQLAVGELTPHLKPVEEHSVDSAAELQHAWDMLANAQKPMLYVGGGVGMAQAVPALRD
FIAMTGIPAVATLKGLGAPDIAHPCYLGMLGMHGTKAANFAVQDCDLLVAVGARFDDR
VTGKLNTFASKAKVIHMDIDPAELGKLRQVHVALQGNLNVLLPALQQPLNIQSWRDEV
MALKQQHHWRYDHPGQAIYAPLLLKQISERKAPETVVTTDVGQHQMWTAQHMNFTRPE
NFITSSGLGTMGFGVPAAVGAQMARPDDMVICVSGDGSFMMNVQELGTIKRKQLPLKI
VLLDNQRLGMVRQWQQLFFDGRYSETNLSDNPDFITLASAFDIPGQRITRKDQVDAAL
DALFNSEGPYLLQVSIDELENVWPLVPPGAGNETMLEKIS"
misc_feature 160209..161852
/locus_tag="YPTS_0143"
/note="acetolactate synthase 2 catalytic subunit;
Reviewed; Region: PRK08978"
/db_xref="CDD:181601"
misc_feature 160221..160685
/locus_tag="YPTS_0143"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature order(160260..160262,160275..160280,160290..160292,
160302..160304,160326..160346,160353..160355,
160362..160367,160374..160379,160383..160391,
160425..160427,160446..160448,160458..160460,
160467..160472)
/locus_tag="YPTS_0143"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(160275..160283,160290..160292,160302..160304,
160329..160331,160335..160346,160350..160352,
160425..160427,160434..160439,160443..160448,
160455..160457,160557..160559,160566..160568)
/locus_tag="YPTS_0143"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(160275..160277,160347..160349,160425..160427,
160437..160439)
/locus_tag="YPTS_0143"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature 160764..161171
/locus_tag="YPTS_0143"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:201080"
misc_feature 161262..161819
/locus_tag="YPTS_0143"
/note="Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the condensation
of two molecules of pyruvate to give the...; Region:
TPP_AHAS; cd02015"
/db_xref="CDD:48178"
misc_feature order(161331..161342,161409..161411,161415..161417,
161490..161498,161505..161507,161571..161573)
/locus_tag="YPTS_0143"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48178"
misc_feature order(161400..161402,161409..161411,161415..161417,
161502..161507,161511..161516,161535..161537,
161652..161657,161667..161669,161676..161678)
/locus_tag="YPTS_0143"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48178"
gene 161852..162109
/gene="ilvM"
/locus_tag="YPTS_0144"
/db_xref="GeneID:6260652"
CDS 161852..162109
/gene="ilvM"
/locus_tag="YPTS_0144"
/note="KEGG: ypi:YpsIP31758_0155 acetolactate synthase
isozyme II small subunit"
/codon_start=1
/transl_table=11
/product="acetolactate synthase 2 regulatory subunit"
/protein_id="YP_001870598.1"
/db_xref="GI:186893486"
/db_xref="InterPro:IPR004789"
/db_xref="GeneID:6260652"
/translation="MIQHQLSIQARFRPEMLERVLRVVRHRGFQVCAMNMSPMIDAGN
VNIELTVASQRPVDLLSSQLSKLMDVACVEILQPNTLQIRA"
misc_feature 161852..162079
/gene="ilvM"
/locus_tag="YPTS_0144"
/note="acetolactate synthase 2 regulatory subunit;
Provisional; Region: ilvM; PRK11152"
/db_xref="CDD:183000"
gene 162132..163058
/locus_tag="YPTS_0145"
/db_xref="GeneID:6260653"
CDS 162132..163058
/locus_tag="YPTS_0145"
/note="catalyzes the transamination of the branched-chain
amino acids to their respective alpha-keto acids"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid aminotransferase"
/protein_id="YP_001870599.1"
/db_xref="GI:186893487"
/db_xref="InterPro:IPR001544"
/db_xref="InterPro:IPR005785"
/db_xref="GeneID:6260653"
/translation="MTKKADYIWFNGEMVPWAEAKVHVMSHALHYGTSVFEGVRCYES
HKGPVVFRHREHMQRLHDSAKIYRMPVSQSVDELMEACRATLRKNNLTSAYIRPLVFI
GDVGMGVNPPEGYNTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRVAPNTIPTAAKA
GGNYLSSLLVGSEARRHGYQEGIALDVHGYLSEGAGENLFEVKDGILFTPPFTSSALP
GITRDAIIKLAKDMGLEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGIGK
RGPVTAKIQQAFFGLFTGETEDKWGWLDQVNP"
misc_feature 162192..163013
/locus_tag="YPTS_0145"
/note="BCAT_beta_family: Branched-chain aminotransferase
catalyses the transamination of the branched-chain amino
acids leusine, isoleucine and valine to their respective
alpha-keto acids, alpha-ketoisocaproate,
alpha-keto-beta-methylvalerate and...; Region:
BCAT_beta_family; cd01557"
/db_xref="CDD:29568"
misc_feature order(162192..162206,162213..162227,162231..162233,
162237..162239,162327..162329,162420..162422,
162426..162428,162444..162452,162462..162464,
162489..162491,162612..162614,162627..162629,
162633..162635,162645..162647,162687..162689)
/locus_tag="YPTS_0145"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29568"
misc_feature order(162222..162224,162237..162239,162306..162308,
162456..162458,162606..162608,162621..162623,
162708..162710,162789..162794,162900..162902)
/locus_tag="YPTS_0145"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:29568"
misc_feature 162606..162608
/locus_tag="YPTS_0145"
/note="catalytic residue [active]"
/db_xref="CDD:29568"
gene 163369..165219
/locus_tag="YPTS_0146"
/db_xref="GeneID:6260654"
CDS 163369..165219
/locus_tag="YPTS_0146"
/EC_number="4.2.1.9"
/note="catalyzes the dehydration of
2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate
in valine and isoleucine biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydroxy-acid dehydratase"
/protein_id="YP_001870600.1"
/db_xref="GI:186893488"
/db_xref="InterPro:IPR000581"
/db_xref="InterPro:IPR004404"
/db_xref="GeneID:6260654"
/translation="MPKYRSHTTTHGRNMAGARALWRATGMTDDDFGKPIIAVVNSFT
QFVPGHVHLRDLGKLVAEQIVASGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDKII
KLDLIDAMIQGANPNVSDEESAQIERSACPTCGSCSGMFTANSMNCLNEALGLALPGN
GSLLATHADRKQLFLDAGKHIVALTKRYYEQDDVSALPRNIANKAAFENAMILDIAMG
GSTNTVLHLLAAAQEGEIDFSMTDIDHLSRKVPHLCKVAPSTQKYHMEDVHRAGGVIG
ILGELDRAGLLNRDVSNVLGLNLTQTLEAYDVMLTQDEGVKQMYAAGPAGIRTTKAFS
QDCRYPSLDTDREEGCIRTREHAYSQDGGLAVLYGNIAADGCIVKTAGVDKDSLTFRG
PAKVFESQDEAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTTYLKSMGLGKSC
ALLTDGRFSGGTSGLSIGHVSPEAASGGLIGLVQDGDFINIDIPNRGIVLDVSEAELA
ARRETEEAHGDAAWSPKGRERQVSYALRAYAMLATSADKGAVRDKSKLGG"
misc_feature 163372..165216
/locus_tag="YPTS_0146"
/note="dihydroxy-acid dehydratase; Provisional; Region:
PRK12448"
/db_xref="CDD:183532"
gene 165225..166769
/locus_tag="YPTS_0147"
/db_xref="GeneID:6260655"
CDS 165225..166769
/locus_tag="YPTS_0147"
/note="threonine deaminase; threonine dehydratase; in
Escherichia coli, IlvA is part of the isoleucine
biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="threonine dehydratase"
/protein_id="YP_001870601.1"
/db_xref="GI:186893489"
/db_xref="InterPro:IPR000634"
/db_xref="InterPro:IPR001721"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR005787"
/db_xref="GeneID:6260655"
/translation="MAVSQPLSAAPCGAEYLRAILRAPVYEVAQVTPLQVMEKISSRV
GNTVLVKREDRQPVHSFKLRGAYAMISSLTEEQKACGVVTASAGNHAQGVALSAHKMG
IKALIVMPVATADIKVDAVRAFGGEVLLFGANFDEAKTKAIALAQEQGYTFVPPFDHP
AVIAGQGTLAMELLQQDAHLDRVFVPVGGGGLVAGVAVLIKQLMPQIKVIGVEAEDSA
CLRAALDAGQPVDLARVGLFAEGVAVKRIGDEPFRLCQEYLDDVITVDSDAICAAVKD
LFEDVRAIAEPSGALALAGLKKYVQQHNIQGERLAHVLSGANVNFHGLRYVSERCELG
EQREALLAVTIPEQKGSFLRFCELLGGRSVTEFNYRYADAENACIFVGVRLTRGYAER
VEILAELQDKGYQVVDLSDDEMAKLHVRYMVGGRPSKPLRERLFSFEFPESPGALLKF
LHTLGTHWNISLFHYRSHGTDFGRVLAAFELSATEPQFEERLAALGYYCHDETDNPAF
KFFLAG"
misc_feature 165258..166763
/locus_tag="YPTS_0147"
/note="threonine dehydratase; Reviewed; Region: PRK09224"
/db_xref="CDD:181709"
misc_feature 165273..166184
/locus_tag="YPTS_0147"
/note="Threonine dehydratase: The first step in amino acid
degradation is the removal of nitrogen. Although the
nitrogen atoms of most amino acids are transferred to
alpha-ketoglutarate before removal, the alpha-amino group
of threonine can be directly...; Region: Thr-dehyd;
cd01562"
/db_xref="CDD:107205"
misc_feature order(165273..165278,165285..165287,165294..165299,
165384..165389,165825..165830,166035..166037,
166044..166049,166056..166058,166068..166076,
166173..166184)
/locus_tag="YPTS_0147"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:107205"
misc_feature order(165408..165410,165489..165491,165786..165800,
166167..166169)
/locus_tag="YPTS_0147"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107205"
misc_feature 165408..165410
/locus_tag="YPTS_0147"
/note="catalytic residue [active]"
/db_xref="CDD:107205"
misc_feature 166236..166490
/locus_tag="YPTS_0147"
/note="First of two tandem C-terminal ACT domains of
threonine dehydratase I (ThrD-I; L-threonine hydrolyase);
Region: ACT_ThrD-I_1; cd04906"
/db_xref="CDD:153178"
misc_feature 166272..166289
/locus_tag="YPTS_0147"
/note="putative Ile/Val binding site [chemical binding];
other site"
/db_xref="CDD:153178"
misc_feature 166521..166760
/locus_tag="YPTS_0147"
/note="Second of two tandem C-terminal ACT domains of
threonine dehydratase I (ThrD-I; L-threonine hydrolyase);
Region: ACT_ThrD-I_2; cd04907"
/db_xref="CDD:153179"
misc_feature 166557..166574
/locus_tag="YPTS_0147"
/note="putative Ile/Val binding site [chemical binding];
other site"
/db_xref="CDD:153179"
gene complement(166900..167364)
/locus_tag="YPTS_0148"
/db_xref="GeneID:6260656"
CDS complement(166900..167364)
/locus_tag="YPTS_0148"
/note="PFAM: protein of unknown function DUF943;
KEGG: yps:YPTB0139 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870602.1"
/db_xref="GI:186893490"
/db_xref="InterPro:IPR010351"
/db_xref="GeneID:6260656"
/translation="MKVKNKKNLCALLLIGSVLLGYFFWLSRHPVEIISVHQRNNYSD
ILVRNFPFTEKGKINWWLENRDMLKAKYSIPKPASDGFYTIIFWDFGDGYKEEGKYDR
LCFSDMNTTKNCIEKEKYMTIYKIKNDEPLFSFDGNRYFLNENNKIVKMKRE"
misc_feature complement(166903..167364)
/locus_tag="YPTS_0148"
/note="Enterobacterial putative membrane protein (DUF943);
Region: DUF943; pfam06092"
/db_xref="CDD:147966"
gene complement(167382..167846)
/locus_tag="YPTS_0149"
/db_xref="GeneID:6260657"
CDS complement(167382..167846)
/locus_tag="YPTS_0149"
/note="PFAM: protein of unknown function DUF943;
KEGG: yps:YPTB0140 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870603.1"
/db_xref="GI:186893491"
/db_xref="InterPro:IPR010351"
/db_xref="GeneID:6260657"
/translation="MKAKSKKIICALLLLGSILLGYFFWLSLRPVEIVAIHKDGNFSA
VLVRDFPVTDKGKINWWLENKSRLKDKYNIPNPAPDGFFSITIWDFGEGYKEEGKYDR
RCFEDMKTDKNCIDKKSVFSVRRINNDRILFITYEGRYSLNDNGEIIKIKRK"
misc_feature complement(167388..167846)
/locus_tag="YPTS_0149"
/note="Enterobacterial putative membrane protein (DUF943);
Region: DUF943; pfam06092"
/db_xref="CDD:147966"
gene complement(167926..168387)
/locus_tag="YPTS_0150"
/db_xref="GeneID:6260658"
CDS complement(167926..168387)
/locus_tag="YPTS_0150"
/note="PFAM: protein of unknown function DUF943;
KEGG: yps:YPTB0141 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870604.1"
/db_xref="GI:186893492"
/db_xref="InterPro:IPR010351"
/db_xref="GeneID:6260658"
/translation="MKAKSKKTLYALLLIGSVLLGYFFWLSLRPVEIVAVHKDRNFSA
VLVRDFPVTDKGKINWWLENKSRLKDKYNIPNPAPDGFFSITIWDFGDGYKEEGKYDR
RCFEDMKTSKNCIDKNSLMIIRNSQYNVMSFTLDSGIYQLKNGEIVKMKHE"
misc_feature complement(167929..168387)
/locus_tag="YPTS_0150"
/note="Enterobacterial putative membrane protein (DUF943);
Region: DUF943; pfam06092"
/db_xref="CDD:147966"
gene complement(168371..169249)
/locus_tag="YPTS_0151"
/db_xref="GeneID:6260659"
CDS complement(168371..169249)
/locus_tag="YPTS_0151"
/note="KEGG: yps:YPTB0142 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870605.1"
/db_xref="GI:186893493"
/db_xref="GeneID:6260659"
/translation="MLETTKSTVQALYFPCTVFKTQKRMDDYGADDMRCGDLSATQLK
TDFNLHNISSKVNPYTLTLFQQLKPMPYGYAYDKNPESKKITRQECVRILFNEFRHES
RSFAFYGPYKHLIEKMIDHMQNGNGTPFRDLSLDAALKEQILSDYTEKNSTRLLLRKV
LNENIDWRNKLYPAEKKDDIRKFILDGRLPKFDRFQDNFNGMGITVHDTWATDITIKS
LQIDNDRYRAMVHYKIQDHFGLDNNDIKNTKFNRFHFFRIWFVLQRFNQFGFKPFMTN
MEATIEITGGRNESKK"
misc_feature complement(168395..169219)
/locus_tag="YPTS_0151"
/note="conserved hypothetical protein; Region: TIGR03034"
/db_xref="CDD:132079"
gene 169897..170106
/locus_tag="YPTS_0152"
/db_xref="GeneID:6260660"
CDS 169897..170106
/locus_tag="YPTS_0152"
/note="KEGG: yps:YPTB0143 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870606.1"
/db_xref="GI:186893494"
/db_xref="GeneID:6260660"
/translation="MEDNGAVAKETIEGTVGYIGDDISLLTSAMNNFSSQVSEQVSML
GAIQSNVTGSIAMISCYSIGRVIAA"
gene complement(170161..171042)
/locus_tag="YPTS_0153"
/db_xref="GeneID:6260661"
CDS complement(170161..171042)
/locus_tag="YPTS_0153"
/note="participates in controlling several genes involved
in isoleucine and valine biosynthesis; activates the
transcription of the ilvC gene in the presence of
acetolactate or acetohydroxybutyrate"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator IlvY"
/protein_id="YP_001870607.1"
/db_xref="GI:186893495"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:6260661"
/translation="MDLRDLKVFLHLAESRHFGRSAKAMHVSPSTLSRQIQRLEETIG
QPLFLRDNRTVQLTDAGNQLKAFAQQTLLQYQQLLHALGQHGPSLSGELRLFCSVTAA
YSHLPPILDRFRARHPLVEIKLTTGDAADAVNKVQSNEADLGIAGRPEVLPTSVAFTQ
IGEIPLVLIAPALPCAVRSQVAVEKPDWAMIPFILPEHGPSRKRIDLWFRRQRITNPL
IYATVSGHEAIVSMVALGCGVALIPSVVVDNSPEPVRNRISLLDDVSLVEPFELGVCV
PKKRLQEPLIDAFWGLL"
misc_feature complement(170860..171036)
/locus_tag="YPTS_0153"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(170164..170970)
/locus_tag="YPTS_0153"
/note="DNA-binding transcriptional regulator IlvY;
Provisional; Region: PRK11716"
/db_xref="CDD:183288"
misc_feature complement(170167..170769)
/locus_tag="YPTS_0153"
/note="The C-terminal substrate binding of LysR-type
transcriptional regulator IlvY, which activates the
expression of ilvC gene that encoding acetohydroxy acid
isomeroreductase for the biosynthesis of branched amino
acids; contains the type 2 periplasmic bindin; Region:
PBP2_IlvY; cd08430"
/db_xref="CDD:176121"
misc_feature complement(order(170338..170343,170347..170352,
170368..170385,170665..170685,170689..170691,
170701..170703,170710..170715,170719..170724))
/locus_tag="YPTS_0153"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176121"
gene 171338..172816
/locus_tag="YPTS_0154"
/db_xref="GeneID:6260662"
CDS 171338..172816
/locus_tag="YPTS_0154"
/EC_number="1.1.1.86"
/note="catalyzes the formation of
(R)-2,3-dihydroxy-3-methylbutanoate from
(S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and
isoleucine biosynthesis"
/codon_start=1
/transl_table=11
/product="ketol-acid reductoisomerase"
/protein_id="YP_001870608.1"
/db_xref="GI:186893496"
/db_xref="InterPro:IPR000506"
/db_xref="InterPro:IPR013023"
/db_xref="InterPro:IPR013116"
/db_xref="GeneID:6260662"
/translation="MANYFNTLNLRQQLAQLGKCRFMARDEFADEAGYLKGKKVVIVG
CGAQGLNQGLNMRDSGLDVAYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV
VNLTPDKQHSAVVKAVQPLMKEGAALGYSHGFNIVEVGEQVRKDITVVMVAPKCPGTE
VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL
MGEQTILCGMLQAGSLLCFDKLVSEGTDAAYAEKLIQFGWETITEALKQGGITLMMDR
LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGAFSSGMMADWANDDVKLLNWREET
GRTAFENAPQFEGKISEQEYFDHGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH
ELPLIANTIARKRLYEMNVVISDTAEYGNYLFANAAVPLLKEKFMDSLQAGDLGKSIP
GSAVDNAQLRDVNEAIRNHPIEAVGHKLRGYMTDMKRIAVAG"
misc_feature 171341..172804
/locus_tag="YPTS_0154"
/note="ketol-acid reductoisomerase; Validated; Region:
PRK05225"
/db_xref="CDD:179967"
misc_feature 171437..171877
/locus_tag="YPTS_0154"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 171965..172336
/locus_tag="YPTS_0154"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvC; pfam01450"
/db_xref="CDD:110451"
misc_feature 172409..172795
/locus_tag="YPTS_0154"
/note="Acetohydroxy acid isomeroreductase, catalytic
domain; Region: IlvC; pfam01450"
/db_xref="CDD:110451"
gene 172997..173197
/locus_tag="YPTS_0155"
/db_xref="GeneID:6260663"
CDS 172997..173197
/locus_tag="YPTS_0155"
/note="KEGG: ypi:YpsIP31758_0164 colicin/pyocin immunity
family protein"
/codon_start=1
/transl_table=11
/product="colicin/pyocin immunity family protein"
/protein_id="YP_001870609.1"
/db_xref="GI:186893497"
/db_xref="GeneID:6260663"
/translation="MLYYEPEFLGSLRQEAYNTYEIAKTEREVAERNRVQKKPFGLFI
EEMTLQKTLTDSQVAETAAHII"
gene 173393..174841
/locus_tag="YPTS_0156"
/db_xref="GeneID:6260664"
CDS 173393..174841
/locus_tag="YPTS_0156"
/note="PFAM: S-type Pyocin domain protein;
KEGG: ypg:YpAngola_A0495 S-type pyocin family protein"
/codon_start=1
/transl_table=11
/product="S-type pyocin domain-containing protein"
/protein_id="YP_001870610.1"
/db_xref="GI:186893498"
/db_xref="InterPro:IPR010715"
/db_xref="GeneID:6260664"
/translation="MGLLMQQQRVNADLETAKITEPQRVENARLTAEAAEKAARDRRI
SEEIAATEAKRQRMENERLAEQERQRVEGTKQQVSEASCAQQASAWQNRFTLPALQPS
GSAQYSFAASGMSAVGEAAELHNSFLAAQEQLSAIATISASGSVAAMIALGIYQTKVG
ESSERPPGWNVNPKFVGSISLSAMGLPATESLASQGEMALPVRMRIIDAKDWIGCTEI
YAVKTGVAGVLPKVKVGAAQYDESTGVYTFTTDSTPPRTLIFTPAQPPGAETRPILAP
PGSTPATLQHTGEMIIKPVITPTILPLPQLYARDFHDYIIWFPADSGLEPVYVYLNSP
YGKTTAKGKYSGRDFNPDKAGGPIKNLDWKEIKIRGEGVDEVKLHTRRFGELEDNKLM
IERLEKILTNKLTATATDIDKRFYTHEIRELERYRMLGIPDDVNDKSVWNDAHTATLE
DFKINEKTQPLYTSEAEDAYIKAELKNSLGSK"
misc_feature 173957..174382
/locus_tag="YPTS_0156"
/note="S-type Pyocin; Region: Pyocin_S; pfam06958"
/db_xref="CDD:191651"
gene 174841..175104
/locus_tag="YPTS_0157"
/db_xref="GeneID:6260665"
CDS 174841..175104
/locus_tag="YPTS_0157"
/note="KEGG: yps:YPTB0147 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870611.1"
/db_xref="GI:186893499"
/db_xref="GeneID:6260665"
/translation="MSIMEKIIQNETVEDVLLAFTPNTAYQGIERMYVRYRFNIVSNR
ELLFTYQRLIKEAKLAEDEKGHTLKGPNWKEPKFVTDKKYGIE"
gene 175620..175874
/locus_tag="YPTS_0158"
/db_xref="GeneID:6260666"
CDS 175620..175874
/locus_tag="YPTS_0158"
/note="PFAM: Colicin immunity protein/pyocin immunity
protein;
KEGG: yps:YPTB0149 putative colicin immunity protein"
/codon_start=1
/transl_table=11
/product="colicin immunity protein/pyocin immunity
protein"
/protein_id="YP_001870612.1"
/db_xref="GI:186893500"
/db_xref="InterPro:IPR000290"
/db_xref="GeneID:6260666"
/translation="MKLKNSISEYAEGEFLDFLNKIWSVDVSESEHDALIRHFVMITE
HPQGNGVLFYPPEGVENSPEGVLDFIKKWRSENGKPSFKE"
misc_feature 175620..175871
/locus_tag="YPTS_0158"
/note="Colicin immunity protein / pyocin immunity protein;
Region: Colicin_Pyocin; pfam01320"
/db_xref="CDD:201726"
gene 176027..176446
/locus_tag="YPTS_0159"
/db_xref="GeneID:6260667"
CDS 176027..176446
/locus_tag="YPTS_0159"
/note="PFAM: HNH endonuclease;
KEGG: yps:YPTB0150 putative pyocin S2 (partial)"
/codon_start=1
/transl_table=11
/product="HNH endonuclease"
/protein_id="YP_001870613.1"
/db_xref="GI:186893501"
/db_xref="InterPro:IPR002711"
/db_xref="InterPro:IPR003060"
/db_xref="GeneID:6260667"
/translation="MYVYLKSPRDEPGVVTGRGERITGIWLAGAGKDMGAPIPAQIAD
KLRGRRFSHFGRFRAAFWKVVGEDPNLVKYFKSGNLGNIKNGKVPSPKEREQVGRRVK
YELHHLKPISKNGAVYHIENIRVLTPKRHIDIHKGAE"
misc_feature <176318..176431
/locus_tag="YPTS_0159"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cd00085"
/db_xref="CDD:28969"
misc_feature order(176336..176338,176342..176350,176354..176356,
176390..176395,176405..176410,176417..176419,
176429..176431)
/locus_tag="YPTS_0159"
/note="active site"
/db_xref="CDD:28969"
gene 176448..176702
/locus_tag="YPTS_0160"
/db_xref="GeneID:6260668"
CDS 176448..176702
/locus_tag="YPTS_0160"
/note="PFAM: Colicin immunity protein/pyocin immunity
protein;
KEGG: yps:YPTB0151 pyocin S2 immunity protein"
/codon_start=1
/transl_table=11
/product="colicin immunity protein/pyocin immunity
protein"
/protein_id="YP_001870614.1"
/db_xref="GI:186893502"
/db_xref="InterPro:IPR000290"
/db_xref="GeneID:6260668"
/translation="MEDKSICDYTESEFLELVKELFNVEKTTEEEDINNLIEFKRLCE
HPAGSDLIFYPDNNREDSPEGVVKEVKKWRAENGKPGFKK"
misc_feature 176457..176699
/locus_tag="YPTS_0160"
/note="Colicin immunity protein / pyocin immunity protein;
Region: Colicin_Pyocin; pfam01320"
/db_xref="CDD:201726"
gene 176855..177283
/locus_tag="YPTS_0161"
/db_xref="GeneID:6260669"
CDS 176855..177283
/locus_tag="YPTS_0161"
/note="PFAM: HNH endonuclease;
KEGG: yps:YPTB0152 putative pyocin S2 (partial)"
/codon_start=1
/transl_table=11
/product="HNH endonuclease"
/protein_id="YP_001870615.1"
/db_xref="GI:186893503"
/db_xref="InterPro:IPR002711"
/db_xref="InterPro:IPR003060"
/db_xref="GeneID:6260669"
/translation="MYVYLKSLRDEPGVVTGRGERITGIWLAGAGKDMGVPIPSQIAD
KLRGRWFSHFGRFRAAFWREVANDPELVGQFIISNRERMSVGKAPKAKKIDSGGKRIP
FEIHHVKFIKDNGEVYNIDNLRILTPKLHIELHSKNKGKQ"
misc_feature <177137..177259
/locus_tag="YPTS_0161"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cd00085"
/db_xref="CDD:28969"
misc_feature order(177164..177166,177170..177178,177182..177184,
177218..177223,177233..177238,177245..177247,
177257..177259)
/locus_tag="YPTS_0161"
/note="active site"
/db_xref="CDD:28969"
gene 177280..177543
/locus_tag="YPTS_0162"
/db_xref="GeneID:6260670"
CDS 177280..177543
/locus_tag="YPTS_0162"
/note="PFAM: Colicin immunity protein/pyocin immunity
protein;
KEGG: yps:YPTB0153 colicin immunity protein (E7)"
/codon_start=1
/transl_table=11
/product="colicin immunity protein/pyocin immunity
protein"
/protein_id="YP_001870616.1"
/db_xref="GI:186893504"
/db_xref="InterPro:IPR000290"
/db_xref="GeneID:6260670"
/translation="MKLKNSISEYTEEEFIDFLKEIFKENIADTDARLNELLEHFECV
TEHPEGTDLIYYPLSDYECTPRKILEKVKKWRAENGKPGFKNK"
misc_feature 177280..177534
/locus_tag="YPTS_0162"
/note="Colicin immunity protein / pyocin immunity protein;
Region: Colicin_Pyocin; pfam01320"
/db_xref="CDD:201726"
gene 178101..178472
/locus_tag="YPTS_0163"
/db_xref="GeneID:6260671"
CDS 178101..178472
/locus_tag="YPTS_0163"
/note="KEGG: yps:YPTB0154 probable phage antitermination
protein Q"
/codon_start=1
/transl_table=11
/product="putative phage antitermination protein Q"
/protein_id="YP_001870617.1"
/db_xref="GI:186893505"
/db_xref="GeneID:6260671"
/translation="MSYIQTVLARWGVWARDNSCLDYPHISSGFKGLVTRNKPAESCC
DHDGLVIDNTVGNLQRAAREKELELILRHYVYGQSKSSIARLKKCNEREIRRQLQIAE
SFIEGCITQSDILLEMHKELF"
misc_feature 178101..178466
/locus_tag="YPTS_0163"
/note="Phage antitermination protein Q; Region:
Phage_antitermQ; pfam06530"
/db_xref="CDD:115202"
gene 178753..178875
/locus_tag="YPTS_0164"
/db_xref="GeneID:6260672"
CDS 178753..178875
/locus_tag="YPTS_0164"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870618.1"
/db_xref="GI:186893506"
/db_xref="GeneID:6260672"
/translation="MELKLRLTWFDKQAESFIDICKCECFIEFYYRDKWCVFIF"
misc_feature 178759..>178806
/locus_tag="YPTS_0164"
/note="Cloacin immunity protein; Region: Cloacin_immun;
pfam03513"
/db_xref="CDD:146254"
gene 179085..179420
/locus_tag="YPTS_0165"
/db_xref="GeneID:6260673"
CDS 179085..179420
/locus_tag="YPTS_0165"
/note="KEGG: yps:YPTB0155 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870619.1"
/db_xref="GI:186893507"
/db_xref="GeneID:6260673"
/translation="MSYKILGGIITALVASFLLLLVQWSNLSKQIENKEKELVTVREA
NVVLKNILDIYHVNDMSNRVATARQLENERVLRNEYEENIRQFKAATIDDFCAAQHMP
DRIINLLQE"
gene 179362..179619
/locus_tag="YPTS_0166"
/db_xref="GeneID:6260674"
CDS 179362..179619
/locus_tag="YPTS_0166"
/note="KEGG: hiq:CGSHiGG_04865 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870620.1"
/db_xref="GI:186893508"
/db_xref="InterPro:IPR005829"
/db_xref="GeneID:6260674"
/translation="MIFVLLNICLIVLLTSCKSKSPALKSIDVIRLSPPESALISCEI
PEFTGASWGDSGIYTLALKRELQICKRRLDEVIYWLMGSNS"
gene complement(179679..180497)
/locus_tag="YPTS_0167"
/db_xref="GeneID:6260675"
CDS complement(179679..180497)
/locus_tag="YPTS_0167"
/note="PFAM: Pili assembly chaperone, N-terminal;
KEGG: ypp:YPDSF_3496 chaperone protein"
/codon_start=1
/transl_table=11
/product="Pili assembly chaperone, N-terminal"
/protein_id="YP_001870621.1"
/db_xref="GI:186893509"
/db_xref="InterPro:IPR001829"
/db_xref="InterPro:IPR016147"
/db_xref="GeneID:6260675"
/translation="MHMRKWLSVSNNIMLSRINRRLRGLLLLMTTCRVLTLPALTIGV
LIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPD
KAVSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATPKSGD
ESFVTLALRMQYKVFYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFA
ALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNRNSFSHELK"
misc_feature complement(179685..180413)
/locus_tag="YPTS_0167"
/note="P pilus assembly protein, chaperone PapD [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: FimC; COG3121"
/db_xref="CDD:32935"
misc_feature complement(179952..180329)
/locus_tag="YPTS_0167"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature complement(179700..179885)
/locus_tag="YPTS_0167"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene complement(180463..181830)
/locus_tag="YPTS_0168"
/db_xref="GeneID:6260676"
CDS complement(180463..181830)
/locus_tag="YPTS_0168"
/note="KEGG: yps:YPTB0157 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870622.1"
/db_xref="GI:186893510"
/db_xref="GeneID:6260676"
/translation="MLRPTKPLISSGISQSTTAVYCRRPYFLAGMTLLIGLFSTSAWS
NCTRITAQNQISSSDGTAASWLGSRDDNNGSLNLPSIVDLSTNANFQPDGTLLASATS
DFTTFAVNTGYALDQVLFRCDAADVDQLYEMYATNGDSTYGGRYEDGTIAGNVSYGYA
TTVMNVVIRFTNLATGEYYARIWKGRRLTGLDTDSSGRILVKAKNFSNVYTELFRIDY
ARSGANNTPSYLYGRSQPNAYIAFKGPGITGPIEGTDSYSNWPGWYSTWPASLGLYKY
VTFRRTTICAVSNFTPTVVLPRISVAELNNGNTSSADFNVDFQCQTGINSGVTAGTVA
MGFLVPAANAAKAQALGLMNGNGGVSHLVSDNYGAAGTAGGVGIRIYRNNSPMYLLSK
NVTQTGNNGGWYGILQGAQETTGSVDGGNSYTETFRAELSKISGQTVTAGAVNAHAQV
VIRVQ"
misc_feature complement(180466..181776)
/locus_tag="YPTS_0168"
/note="Fimbrial protein; Region: Fimbrial; cl01416"
/db_xref="CDD:207406"
gene complement(181847..184498)
/locus_tag="YPTS_0169"
/db_xref="GeneID:6260677"
CDS complement(181847..184498)
/locus_tag="YPTS_0169"
/note="PFAM: fimbrial biogenesis outer membrane usher
protein;
KEGG: yps:YPTB0158 putative outer membrane fimbrial usher
porin"
/codon_start=1
/transl_table=11
/product="fimbrial biogenesis outer membrane usher
protein"
/protein_id="YP_001870623.1"
/db_xref="GI:186893511"
/db_xref="InterPro:IPR000015"
/db_xref="GeneID:6260677"
/translation="MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFD
ESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNNKLFKRMSVQFIKDANSSEVYPC
LSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD
QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDF
GFIGLKSGINLGLWQVRQQSNVRYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGET
FTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNARVIIRQNGREIYETN
VAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGE
SRDFTNIDNYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATY
SHAKVENDKTQDGWRMQATYSQTFNQTGTTFSLAGYRYSTKGYRDLNDVFGVRSMQKN
GGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGYSNSYQQ
ISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQY
LSMSASRNPKSGNNYQTSLSGTAGERNSFNYALNAGYDDSNIGSSSNNWGANVQKQFP
NATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYLGETFGLIEANGAQGATVRNA
QGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFET
LTGYAVLIQAEGERLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSG
DQCQLPYAFNRQDTEQDIIHITASCRR"
misc_feature complement(181850..184480)
/locus_tag="YPTS_0169"
/note="fimbrial outer membrane usher protein StbC;
Provisional; Region: PRK15248"
/db_xref="CDD:185160"
misc_feature complement(183887..184375)
/locus_tag="YPTS_0169"
/note="PapC N-terminal domain; Region: PapC_N; pfam13954"
/db_xref="CDD:206124"
misc_feature complement(182111..183841)
/locus_tag="YPTS_0169"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:201318"
misc_feature complement(181889..182089)
/locus_tag="YPTS_0169"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:206123"
gene complement(184526..185257)
/locus_tag="YPTS_0170"
/db_xref="GeneID:6260678"
CDS complement(184526..185257)
/locus_tag="YPTS_0170"
/note="PFAM: Pili assembly chaperone, N-terminal; Pili
assembly chaperone, C-terminal;
KEGG: ypi:YpsIP31758_0170 gram-negative pili assembly
chaperone"
/codon_start=1
/transl_table=11
/product="Pili assembly chaperone, N-terminal"
/protein_id="YP_001870624.1"
/db_xref="GI:186893512"
/db_xref="InterPro:IPR001829"
/db_xref="InterPro:IPR016147"
/db_xref="InterPro:IPR016148"
/db_xref="GeneID:6260678"
/translation="MLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASE
HSIQLTNNDNFPNAVQVWLDSGDEKSTPETGKAPFIVTPPFFRIEANSGQTLRLKYTG
SGLPTDRESVFYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRVDQVSTAL
TFSLRKQGTNLVLTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNAS
VPSSATINFLIMNDFGGQDAGSYRI"
misc_feature complement(184532..185257)
/locus_tag="YPTS_0170"
/note="P pilus assembly protein, chaperone PapD [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: FimC; COG3121"
/db_xref="CDD:32935"
misc_feature complement(184811..185176)
/locus_tag="YPTS_0170"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature complement(184550..184741)
/locus_tag="YPTS_0170"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene complement(185321..185851)
/locus_tag="YPTS_0171"
/db_xref="GeneID:6260679"
CDS complement(185321..185851)
/locus_tag="YPTS_0171"
/note="PFAM: Fimbrial protein;
KEGG: ypi:YpsIP31758_0171 fimbrial protein"
/codon_start=1
/transl_table=11
/product="fimbrial protein"
/protein_id="YP_001870625.1"
/db_xref="GI:186893513"
/db_xref="InterPro:IPR014779"
/db_xref="GeneID:6260679"
/translation="MKKITLAIALFSASTTVAMSASNNTITFQGEVTAQTCSVTVNGL
EANPVVLLPTVSSSDLDASGQTKGKTTFTLGVSGCTSGSDDLDIKTVFIGSLVTATGN
LQNTGTAGNVELQLLKDATTTTGIDLNSGLAQDGIVLLAGDTSAEHDFAVQYYATGQS
TPGSVIASVQYAVSYL"
misc_feature complement(185327..185851)
/locus_tag="YPTS_0171"
/note="P pilus assembly protein, pilin FimA [Cell motility
and secretion / Intracellular trafficking and secretion];
Region: FimA; COG3539"
/db_xref="CDD:33341"
gene complement(186643..187434)
/locus_tag="YPTS_0172"
/db_xref="GeneID:6260680"
CDS complement(186643..187434)
/locus_tag="YPTS_0172"
/note="PFAM: glutamine cyclotransferase;
KEGG: ypi:YpsIP31758_0172 glutamine cyclotransferase"
/codon_start=1
/transl_table=11
/product="glutamine cyclotransferase"
/protein_id="YP_001870626.1"
/db_xref="GI:186893514"
/db_xref="InterPro:IPR007788"
/db_xref="GeneID:6260680"
/translation="MEILNIPRRCFTFLLIIITYSFPLSFADSKPLKYTFEVIRKIPH
DETSFTQGLVIDDGKLYETTGLYKNSKIRELDLTNGKVIRSVDLPDNIFGEGITKLGD
SFYVLTWKEKKAFVINPNDLKIIKTFNYEGEGWGLTTDGINLIMGDGSDTLYFRNPAD
FSIIKKISVTFDGRRIEKINELEWIDGMIYANVWYSDAILVIEPENGRVVKWIELSGL
QFMLDSVNRNTNTLNGIAYDKSKNKIYLTGKNWSNIFEVKFLTSK"
misc_feature complement(186646..187434)
/locus_tag="YPTS_0172"
/note="Glutamine cyclotransferase [Posttranslational
modification, protein turnover, chaperones]; Region:
COG3823"
/db_xref="CDD:33616"
gene complement(187673..187969)
/locus_tag="YPTS_0173"
/db_xref="GeneID:6260681"
CDS complement(187673..187969)
/locus_tag="YPTS_0173"
/note="PFAM: PpiC-type peptidyl-prolyl cis-trans
isomerase;
KEGG: ypm:YP_3172 peptidyl-prolyl cis-trans isomerase C"
/codon_start=1
/transl_table=11
/product="PpiC-type peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_001870627.1"
/db_xref="GI:186893515"
/db_xref="InterPro:IPR000297"
/db_xref="GeneID:6260681"
/translation="MVTVTMANKASALHILVDDEKQANDILAQLNNGANFQELAKKFS
NCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQPYGPVKTQFGYHIIKVLYRS"
misc_feature complement(187676..187954)
/locus_tag="YPTS_0173"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
cl08278"
/db_xref="CDD:208845"
gene complement(187974..188141)
/locus_tag="YPTS_0174"
/db_xref="GeneID:6260682"
CDS complement(187974..188141)
/locus_tag="YPTS_0174"
/note="KEGG: ypi:YpsIP31758_0174 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870628.1"
/db_xref="GI:186893516"
/db_xref="GeneID:6260682"
/translation="MGLRGSELYQKATDEKKLPAFLIGNTHAAATKIRYTDALREPIE
ETLRKITLSLK"
gene 188158..190179
/locus_tag="YPTS_0175"
/db_xref="GeneID:6260683"
CDS 188158..190179
/locus_tag="YPTS_0175"
/note="single-stranded DNA-dependent ATPase; initiates
unwinding at a nick in the DNA; involved in DNA
replication"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase Rep"
/protein_id="YP_001870629.1"
/db_xref="GI:186893517"
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR005752"
/db_xref="InterPro:IPR014016"
/db_xref="InterPro:IPR014017"
/db_xref="GeneID:6260683"
/translation="MRLNPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCG
YQPKHIAAVTFTNKAAREMKERVAQTLGRKEARGLMIATFHTLGLEIIKKEYVALGMK
SNFSLFDAQDQMGLLKDLTHKWLEDDKTLLQQLVSAISNWKNDLLDPAAAAATARSER
DKLFVHCYGLYDAHLKACNVLDFDDLISLPTLLLQKNLEVRERWQNRLRYLLVDEYQD
TNTSQYQMVKLLVGNRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPALRVIKLEQN
YRSSGRILKAANILIANNPHVFEKKLFSELSYGDELKVITANNEDHEAERVVGELIAH
HFVKKTQYSDYAILYRGNHQSRLFEKLLMQNRIPYRISGGDSFFSRPEIKDLLAYLRV
LTNQDDDSAFLRIVNTPKREIGAATVQKLGEWANLRNKSLFRASFDLGLGEHLKGRGL
ESLQRFTHWMDGIIRLVEREPVAAVRDLIHGIDYESWLFETAPSPKAAEMRMKNVNLL
FSWMTEMLEGAELDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFP
YVFLVGMEEGLLPHQSSIDEDNVDEERRLAYVGITRAQRELFFTLCKERRQYGELIRP
EPSRFLMELPQDDLNWENERKAVSPEERMQKGQSHLANLRAQLANAKKP"
misc_feature 188158..190173
/locus_tag="YPTS_0175"
/note="ATP-dependent DNA helicase Rep; Provisional;
Region: PRK10919"
/db_xref="CDD:182838"
misc_feature 188182..188421
/locus_tag="YPTS_0175"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature <189820..189987
/locus_tag="YPTS_0175"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene complement(190347..191843)
/locus_tag="YPTS_0176"
/db_xref="GeneID:6260684"
CDS complement(190347..191843)
/locus_tag="YPTS_0176"
/EC_number="3.6.1.40"
/note="catalyzes the conversion of guanosine
5'-triphosphate,3'-diphosphate (pppGpp) to guanosine
5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp
control the stringent response during amino acid
starvation"
/codon_start=1
/transl_table=11
/product="guanosine pentaphosphate phosphohydrolase"
/protein_id="YP_001870630.1"
/db_xref="GI:186893518"
/db_xref="InterPro:IPR003695"
/db_xref="GeneID:6260684"
/translation="MMLSSTSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLA
AGLDNQNHLSQEAMERGWQCLKLFSERLQDIPLDQIRVVATATLRLASNADEFLRTAT
EILGCPIQVISGEEEARLIYHGVAHTTGGPEQRLVVDIGGGSTELVTGNGAQANILVS
LSMGCVTWLERYFGDRHLAKENFERAELAAHEMIKPVAQRFREHGWQVCVGASGTVQA
LQEIMVAQGMDELITLAKLQQLKQRAIQCGKLEELEIPGLTLERALVFPSGLSILIAI
FQELSIESMTLAGGALREGLVYGMLHLPVEQDIRRRTLRNLQRRYLLDTEQAKRVSCL
ADNFFLQVEKEWHLDGRCREFLQNACLIHEIGLSVDFKHAPQHAAYLIRNLDLPGFTP
AQKLLLSALLQNQSDTIDLSLLNQQNALPADMAQHLCRLLRLAIIFSSRRRDDTLPAV
RLRADNNALYVLVPQGWLEQHPYRAEALEQESHWQSYVQWPLLLEELS"
misc_feature complement(190353..191840)
/locus_tag="YPTS_0176"
/note="guanosine pentaphosphate phosphohydrolase;
Provisional; Region: PRK11031"
/db_xref="CDD:182914"
misc_feature complement(190938..191780)
/locus_tag="YPTS_0176"
/note="Ppx/GppA phosphatase family; Region: Ppx-GppA;
pfam02541"
/db_xref="CDD:202276"
gene complement(191847..193133)
/locus_tag="YPTS_0177"
/db_xref="GeneID:6260685"
CDS complement(191847..193133)
/locus_tag="YPTS_0177"
/note="enables ATP-dependent unwinding of double stranded
RNA as a component of the RNA degradosome, a multi-enzyme
complex important in RNA processing and messenger RNA
degradation"
/codon_start=1
/transl_table=11
/product="ATP-dependent RNA helicase RhlB"
/protein_id="YP_001870631.1"
/db_xref="GI:186893519"
/db_xref="InterPro:IPR000629"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014014"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:6260685"
/translation="MSKTHLTEQKFSDFALHPLVVEALENKGFQYCTPIQALALPLTL
SGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHS
DAESLSQVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQ
VVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEY
VEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIWGHL
AADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLP
DDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTD
LPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRKRPG"
misc_feature complement(191850..193130)
/locus_tag="YPTS_0177"
/note="ATP-dependent RNA helicase RhlB; Provisional;
Region: PRK04837"
/db_xref="CDD:179884"
misc_feature complement(192474..193103)
/locus_tag="YPTS_0177"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:28928"
misc_feature complement(192954..192968)
/locus_tag="YPTS_0177"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28928"
misc_feature complement(192630..192641)
/locus_tag="YPTS_0177"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:28928"
misc_feature complement(192534..192542)
/locus_tag="YPTS_0177"
/note="motif III; other site"
/db_xref="CDD:28928"
misc_feature complement(192057..192437)
/locus_tag="YPTS_0177"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(192189..192197,192270..192275,
192333..192344))
/locus_tag="YPTS_0177"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(192087..192089,192096..192098,
192108..192110,192171..192173))
/locus_tag="YPTS_0177"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 193252..193578
/locus_tag="YPTS_0178"
/db_xref="GeneID:6260686"
CDS 193252..193578
/locus_tag="YPTS_0178"
/note="TIGRFAM: thioredoxin;
PFAM: Thioredoxin domain;
KEGG: ypi:YpsIP31758_0179 thioredoxin"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_001870632.1"
/db_xref="GI:186893520"
/db_xref="InterPro:IPR005746"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR013766"
/db_xref="GeneID:6260686"
/translation="MSDKIIHLSDDSFDTDVLKASGLVLVDFWAEWCGPCKMIAPILD
EIAEEYEGRLTIAKLNIDDNQGTAPKYGIRGIPTLLLFRDGEVVATKVGALSKGQLKA
FLDANL"
misc_feature 193282..193566
/locus_tag="YPTS_0178"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature order(193348..193350,193357..193359)
/locus_tag="YPTS_0178"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene 194058..195317
/gene="rho"
/locus_tag="YPTS_0179"
/db_xref="GeneID:6260687"
CDS 194058..195317
/gene="rho"
/locus_tag="YPTS_0179"
/note="An RNA-DNA helicase that actively releases nascent
mRNAs from paused transcription complexes"
/codon_start=1
/transl_table=11
/product="transcription termination factor Rho"
/protein_id="YP_001870633.1"
/db_xref="GI:186893521"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR002110"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004665"
/db_xref="InterPro:IPR011112"
/db_xref="InterPro:IPR011113"
/db_xref="InterPro:IPR011129"
/db_xref="InterPro:IPR013223"
/db_xref="GeneID:6260687"
/translation="MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAK
SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIR
PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTE
MQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEE
FKGTGNMELHLSRKIAEKRVFPAIDFNRSGTRKEELLTTTDELQKMWILRRILHPMGE
IDAMEFLISKLATAKTNDQFFDNMRRS"
misc_feature 194058..195311
/gene="rho"
/locus_tag="YPTS_0179"
/note="transcription termination factor Rho; Provisional;
Region: rho; PRK09376"
/db_xref="CDD:181809"
misc_feature 194070..194198
/gene="rho"
/locus_tag="YPTS_0179"
/note="Rho termination factor, N-terminal domain; Region:
Rho_N; smart00959"
/db_xref="CDD:198027"
misc_feature 194208..194411
/gene="rho"
/locus_tag="YPTS_0179"
/note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
protein is a transcription termination factor in most
bacteria. In bacteria, there are two distinct mechanisms
for mRNA transcription termination. In intrinsic
termination, RNA polymerase and nascent mRNA...; Region:
Rho_CSD; cd04459"
/db_xref="CDD:88425"
misc_feature order(194223..194225,194229..194231,194241..194243,
194247..194249,194253..194255,194289..194291,
194295..194297,194370..194372,194379..194387)
/gene="rho"
/locus_tag="YPTS_0179"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88425"
misc_feature 194523..195269
/gene="rho"
/locus_tag="YPTS_0179"
/note="Transcription termination factor rho is a bacterial
ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
monomer consists of an N-terminal domain of the OB fold,
which is responsible for binding to cysteine rich
nucleotides. This alignment is of the...; Region:
rho_factor; cd01128"
/db_xref="CDD:29994"
misc_feature order(194574..194576,194907..194909,194940..194942,
194949..194954,194961..194963,194970..194972,
194979..194981,195054..195059,195063..195077,
195081..195083,195153..195158,195198..195200,
195210..195212)
/gene="rho"
/locus_tag="YPTS_0179"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29994"
misc_feature 194589..194612
/gene="rho"
/locus_tag="YPTS_0179"
/note="Walker A motif; other site"
/db_xref="CDD:29994"
misc_feature order(194598..194600,194604..194615,195120..195122)
/gene="rho"
/locus_tag="YPTS_0179"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29994"
misc_feature 194838..194852
/gene="rho"
/locus_tag="YPTS_0179"
/note="Walker B motif; other site"
/db_xref="CDD:29994"
gene 195867..196949
/locus_tag="YPTS_0180"
/db_xref="GeneID:6260688"
CDS 195867..196949
/locus_tag="YPTS_0180"
/note="TIGRFAM: undecaprenyl-phosphate
alpha-N-acetylglucosaminyl 1-phosphatetransferase;
PFAM: glycosyl transferase family 4;
KEGG: ypi:YpsIP31758_0182 undecaprenyl-phosphate
alpha-N-acetylglucosaminyl 1-phosphatetransferase"
/codon_start=1
/transl_table=11
/product="undecaprenyl-phosphate
alpha-N-acetylglucosaminyl 1-phosphatetransferase"
/protein_id="YP_001870634.1"
/db_xref="GI:186893522"
/db_xref="InterPro:IPR000715"
/db_xref="InterPro:IPR012750"
/db_xref="GeneID:6260688"
/translation="MSTELIYIFLFSMAFLFVARKVAIKIGLVDKPNYRKRHQGLIPL
VGGISVFAGVCFAFLITNQQIPHFRLYLACAGLLVFVGALDDRFDISVKIRAFVQALV
GIAMMAVAGLYLRSLGHAFGPWEMVLGPFGYVVTLFAVWAAINAFNMVDGIDGLLGGL
SCVSFGAMGILLYQSGQMSLALWCFAMIATIIPYILLNLGLLGRRYKVFMGDAGSTLI
GFTAIWILLQATQGNAHPINPVTALWIIAIPLMDMIAIMYRRLRKGMSPFSPDRQHIH
HLIMRAGFTSRQAFVLITLAAALLAMIGVIGERLTFIPEWVMLALFLLAFLLYGYCIK
RAWRVARFIKRFKRRMRRASKNKHES"
misc_feature 195867..196946
/locus_tag="YPTS_0180"
/note="undecaprenyl-phosphate alpha-N-acetylglucosaminyl
1-phosphate transferase; Provisional; Region: PRK15119"
/db_xref="CDD:185074"
misc_feature 195969..196718
/locus_tag="YPTS_0180"
/note="This subfamily contains Escherichia coli WecA,
Bacillus subtilis TagO and related proteins. WecA is an
UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate
(Und-P) GlcNAc-1-phosphate transferase that catalyzes the
formation of a phosphodiester bond...; Region:
GT_WecA_like; cd06853"
/db_xref="CDD:133463"
misc_feature 196119..196124
/locus_tag="YPTS_0180"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133463"
misc_feature 196491..196502
/locus_tag="YPTS_0180"
/note="putative catalytic motif [active]"
/db_xref="CDD:133463"
misc_feature order(196644..196646,196686..196697)
/locus_tag="YPTS_0180"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133463"
gene 196970..198046
/locus_tag="YPTS_0181"
/db_xref="GeneID:6260689"
CDS 196970..198046
/locus_tag="YPTS_0181"
/note="Enterobacterial Common Antigen (ECA) polysaccharide
chain length modulation protein"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide biosynthesis protein WzzE"
/protein_id="YP_001870635.1"
/db_xref="GI:186893523"
/db_xref="InterPro:IPR003856"
/db_xref="GeneID:6260689"
/translation="MKPESMSTDKTGSTNNEPSVDNELDIRGLCRTLWRGKVWIIGMA
IIFAAIALGVSYLVKQQWSATAITDKPTVNNLGGYYSQQQFLRNLDIRLNSGLVSEQP
GISDEAYGEFITQLAAYDTRRDFWLQSDYYKQRLEGDAKADAALLDELVNNIVFTARD
DKKIPNDSIKLTAETASDANKLLRGYIDFASQRASSHLNDEIQGAWAARTQSMKAQVK
RQEAVAQAVFDREVAAVKQALKVAGQQGITRSQTDTPAEQLADSKMFMLGKPMLEARL
ETLLATGPSFDIDYDQNRAMLATLNVGPTLDDKFQTYRYLRTPEDPVTRDSPRRVFLL
IMWGAIGALVGAGVVLVRRSNKAL"
misc_feature 197012..198037
/locus_tag="YPTS_0181"
/note="lipopolysaccharide biosynthesis protein WzzE;
Provisional; Region: PRK11638"
/db_xref="CDD:183250"
misc_feature 197033..>197272
/locus_tag="YPTS_0181"
/note="Chain length determinant protein; Region: Wzz;
cl15801"
/db_xref="CDD:210201"
gene 198395..199525
/locus_tag="YPTS_0182"
/db_xref="GeneID:6260690"
CDS 198395..199525
/locus_tag="YPTS_0182"
/EC_number="5.1.3.14"
/note="PFAM: UDP-N-acetylglucosamine 2-epimerase;
KEGG: ypi:YpsIP31758_0184 UDP-N-acetylglucosamine
2-epimerase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine 2-epimerase"
/protein_id="YP_001870636.1"
/db_xref="GI:186893524"
/db_xref="InterPro:IPR003331"
/db_xref="GeneID:6260690"
/translation="MKVLTVFGTRPEAIKMAPLVHALAQDDAFESRVCVTAQHREMLD
QVLRLFEIQPDYDLDIMRPGQGLTEITCRILEGLKPVLEEFKPDVILVHGDTTTTLSA
SLAGFYHRIPVGHVEAGLRTGDLYSPWPEEANRQLTGHLAMYHFAPTENSRQNLLREL
VPENRIFVTGNTVIDALFWVRDRVMNTPDLRANLAQRYAFLDTNKKMILVTGHRRESF
GGGFERICSALAEIARKHPEVQVVYPVHLNPNVSEPVNRILKGIDNIILIDPQDYLPF
VYLMNHAYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVDSGTVLLVGTNINKIVD
AVTRLLTDETAYHQMTRAHNPYGDGYACQRILKALKNHQVTL"
misc_feature 198395..199510
/locus_tag="YPTS_0182"
/note="UDP-N-acetylglucosamine 2-epimerase; Region: wecB;
TIGR00236"
/db_xref="CDD:188036"
misc_feature 198398..199504
/locus_tag="YPTS_0182"
/note="Bacterial members of the UDP-N-Acetylglucosamine
(GlcNAc) 2-Epimerase family are known to catalyze the
reversible interconversion of UDP-GlcNAc and
UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to
produce an activated form of ManNAc residues; Region:
GT1_UDP-GlcNAc_2-Epimerase; cd03786"
/db_xref="CDD:99962"
misc_feature order(198422..198424,199205..199207,199211..199213,
199220..199222,199268..199270,199280..199282)
/locus_tag="YPTS_0182"
/note="active site"
/db_xref="CDD:99962"
misc_feature order(198599..198601,198605..198610,198629..198631,
198713..198718,198722..198724,198728..198730,
198779..198781,198791..198793,198866..198868)
/locus_tag="YPTS_0182"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99962"
gene 199522..200784
/gene="wecC"
/locus_tag="YPTS_0183"
/db_xref="GeneID:6260691"
CDS 199522..200784
/gene="wecC"
/locus_tag="YPTS_0183"
/note="catalyzes the oxidation of
UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic
acid"
/codon_start=1
/transl_table=11
/product="UDP-N-acetyl-D-mannosamine dehydrogenase"
/protein_id="YP_001870637.1"
/db_xref="GI:186893525"
/db_xref="InterPro:IPR001732"
/db_xref="InterPro:IPR014026"
/db_xref="InterPro:IPR014027"
/db_xref="GeneID:6260691"
/translation="MSFETISVIGLGYIGLPTAAAFASRKKKVIGVDVNAHAVETINR
GAIHIVEPDLDKVVKIAVEGGYLQAATKPQAADAFLIAVPTPFKGDHEPDMIFVESAA
KSIAPVLKKGDLVILESTSPVGATEQMAQWLAEARPDLSFPQQAGEAADINIAYCPER
VLPGQVMVELIQNDRVIGGMTPKCSARASALYKIFLEGECVVTNSRTAEMCKLTENSF
RDVNIAFANELSLICDEQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVS
QNPQLARLIHTARLVNDGKPLWVVDRVKAAVADCLAASDKRASEVKIACFGLAFKPDI
DDLRESPAVGVARLIAEWHVGETLVVEPNVEQLPKSLMGLVTLKDTATALQQADVLVM
LVDHKQFKAIKPEDIKQQWIVDTKGVWR"
misc_feature 199522..200766
/gene="wecC"
/locus_tag="YPTS_0183"
/note="UDP-N-acetyl-D-mannosamine dehydrogenase;
Provisional; Region: wecC; PRK11064"
/db_xref="CDD:182940"
misc_feature 199537..>199872
/gene="wecC"
/locus_tag="YPTS_0183"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 200137..200409
/gene="wecC"
/locus_tag="YPTS_0183"
/note="UDP-glucose/GDP-mannose dehydrogenase family,
central domain; Region: UDPG_MGDP_dh; pfam00984"
/db_xref="CDD:201536"
misc_feature 200491..200778
/gene="wecC"
/locus_tag="YPTS_0183"
/note="UDP binding domain; Region: UDPG_MGDP_dh_C;
smart00984"
/db_xref="CDD:198052"
gene 200781..201848
/locus_tag="YPTS_0184"
/db_xref="GeneID:6260692"
CDS 200781..201848
/locus_tag="YPTS_0184"
/note="TIGRFAM: dTDP-glucose 4,6-dehydratase;
PFAM: NAD-dependent epimerase/dehydratase; short-chain
dehydrogenase/reductase SDR; 3-beta hydroxysteroid
dehydrogenase/isomerase; polysaccharide biosynthesis
protein CapD; dTDP-4-dehydrorhamnose reductase; Male
sterility domain;
KEGG: ypi:YpsIP31758_0186 dTDP-glucose 4,6-dehydratase"
/codon_start=1
/transl_table=11
/product="dTDP-glucose 4,6-dehydratase"
/protein_id="YP_001870638.1"
/db_xref="GI:186893526"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR003869"
/db_xref="InterPro:IPR005888"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:6260692"
/translation="MRRILVTGGAGFIGSAVVRHIIDGTSDSVVVVDKLTYAGNLESL
SVVAGSERYAFEQVDICDRSELDRVFAQYQPNVVMHLAAESHVDRSIDGPAAFIETNV
VGTYTLLEAARHYWQQLSVEAKQAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPY
SASKASSDHLVRAWLRTYGLPTLVTNCSNNYGPYHFPEKLIPLVILNALAGKPLPVYG
NGAQVRDWLYVEDHARALYQVVTEGVVGETYNIGGHNERKNIEVVETICALLDELVPA
KPAGIAHYRDLITYVKDRPGHDMRYAIDAGKIERELGWRPQETFESGIRKTVLWYLNN
ESWWRRVQDGSYAGERLGLSD"
misc_feature 200781..201839
/locus_tag="YPTS_0184"
/note="dTDP-glucose 4,6-dehydratase; Provisional; Region:
PRK10217"
/db_xref="CDD:182313"
misc_feature 200784..201788
/locus_tag="YPTS_0184"
/note="dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs;
Region: dTDP_GD_SDR_e; cd05246"
/db_xref="CDD:187557"
misc_feature order(200802..200804,200808..200819,200877..200888,
200892..200897,200952..200960,201021..201029,
201033..201035,201078..201080,201174..201182,
201258..201260,201270..201272,201339..201350)
/locus_tag="YPTS_0184"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187557"
misc_feature order(201033..201041,201180..201188,201258..201260,
201339..201347,201372..201380,201387..201392,
201423..201431,201444..201446,201450..201452,
201555..201557,201660..201662,201669..201671,
201681..201683)
/locus_tag="YPTS_0184"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187557"
misc_feature order(201045..201047,201051..201053,201060..201065,
201072..201074,201084..201089,201096..201098,
201108..201110,201117..201119,201198..201200,
201231..201233,201237..201242,201246..201257,
201264..201266,201273..201278,201285..201290,
201297..201302,201306..201314,201672..201674)
/locus_tag="YPTS_0184"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187557"
misc_feature order(201081..201083,201180..201182,201258..201260,
201270..201272)
/locus_tag="YPTS_0184"
/note="active site"
/db_xref="CDD:187557"
gene 202092..203024
/locus_tag="YPTS_0185"
/db_xref="GeneID:6260693"
CDS 202092..203024
/locus_tag="YPTS_0185"
/note="TIGRFAM: glucose-1-phosphate thymidylyltransferase;
PFAM: Nucleotidyl transferase;
KEGG: ypn:YPN_0102 glucose-1-phosphate
thymidylyltransferase"
/codon_start=1
/transl_table=11
/product="glucose-1-phosphate thymidylyltransferase"
/protein_id="YP_001870639.1"
/db_xref="GI:186893527"
/db_xref="InterPro:IPR005835"
/db_xref="InterPro:IPR005907"
/db_xref="GeneID:6260693"
/translation="MYQEIVCIRRLYVSGERMKGIILAGGSGSRLHPITRGVSKQLLP
IYDKPMIYYPLSVLMLAGIRDVLIISTPEDLPSFQRLLGNGDEFGINLSYAAQPSPDG
LAQAFIIGEAFIDNEPCCLVLGDNIYFGQGFSPKLKAVAARQQGATVFGYQVMDPERF
GVVEFDDNFRALSIEEKPSQPKSNWAVTGLYFYDNQVVDFAKQVKPSARGELEITSIN
QMYLDRGELTVELLGRGFAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNG
WLDDDGVKRAATALAKTGYGKYLLDLLHARPRQY"
misc_feature 202143..202862
/locus_tag="YPTS_0185"
/note="G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase; Region:
G1P_TT_short; cd02538"
/db_xref="CDD:133019"
misc_feature 202146..203000
/locus_tag="YPTS_0185"
/note="glucose-1-phosphate thymidylyltransferase, short
form; Region: rmlA; TIGR01207"
/db_xref="CDD:130274"
misc_feature order(202158..202160,202164..202169,202380..202382,
202389..202400,202464..202466,202572..202574,
202617..202622,202650..202652,202734..202736)
/locus_tag="YPTS_0185"
/note="substrate binding site; other site"
/db_xref="CDD:133019"
misc_feature order(202176..202178,202185..202193,202200..202205,
202215..202223,202227..202238,202245..202247,
202320..202322,202476..202481,202545..202556,
202566..202571,202803..202811,202821..202826,
202833..202835,202842..202850,202857..202862)
/locus_tag="YPTS_0185"
/note="tetramer interface; other site"
/db_xref="CDD:133019"
gene 203002..203739
/locus_tag="YPTS_0186"
/db_xref="GeneID:6260694"
CDS 203002..203739
/locus_tag="YPTS_0186"
/note="TIGRFAM: TDP-D-fucosamine acetyltransferase;
PFAM: GCN5-related N-acetyltransferase;
KEGG: ypi:YpsIP31758_0188 TDP-D-fucosamine
acetyltransferase"
/codon_start=1
/transl_table=11
/product="TDP-fucosamine acetyltransferase"
/protein_id="YP_001870640.1"
/db_xref="GI:186893528"
/db_xref="InterPro:IPR000182"
/db_xref="InterPro:IPR012752"
/db_xref="GeneID:6260694"
/translation="MPVHASIEPLGWESEFFQRQSAKLIFSDSAPPLNPAELAAFTLV
QAKVPTHRLDLIDALSQLDFHLVEGEIDLSLAVGEKEGIGTENATSEPNMGPYSQRVA
TEADIPQLRRVAASTFALSRFRAPWYDAQDSGRFYALWVEKAVLGTFDHQCLLVLDST
DQPVGFVTLRDLQDGSARIGLLAVFPGAQSKGIGLRLMSAAKQWCQHHGLHRLRVATQ
MSNIAALRLYIRSGASIESTAYWLCRG"
misc_feature 203317..203697
/locus_tag="YPTS_0186"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_10; pfam13673"
/db_xref="CDD:205850"
misc_feature 203461..203646
/locus_tag="YPTS_0186"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(203545..203553,203581..203586)
/locus_tag="YPTS_0186"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 203741..204871
/locus_tag="YPTS_0187"
/db_xref="GeneID:6260695"
CDS 203741..204871
/locus_tag="YPTS_0187"
/note="catalyzes the formation of dTDP-D-fucosamine from
dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common
antigen biosynthesis"
/codon_start=1
/transl_table=11
/product="TDP-4-oxo-6-deoxy-D-glucose transaminase"
/protein_id="YP_001870641.1"
/db_xref="GI:186893529"
/db_xref="InterPro:IPR000653"
/db_xref="InterPro:IPR001597"
/db_xref="InterPro:IPR012749"
/db_xref="GeneID:6260695"
/translation="MIPFNTPPIVGTELGYMQAAMSSGKLCGDGGFTRRCQQWMEKRF
NCPKVLLTPSCTASLEMAALLLDIKPGDEVIMPSFTFVSTANAFVLRGAKMVFVDIRP
DTMNIDETKIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST
YKGKALGTIGHIGCFSFHETKNYTAGGEGGATLINDPSLIDRAEIIREKGTNRSQFFR
GQVDKYTWRDIGSSYLMSDLQAAYLWGQLEAAEQINERRLALWHGYYNAFKPLADAGR
IDLPVIPGNVVQNAHMFYIKLRDIEERSAFISYLKEADIMAVFHYIPLHACPAGEAFG
RMAGEDRFTSKESERLVRLPIFYNLTDVNQSTVINTVLSFFV"
misc_feature 203741..204865
/locus_tag="YPTS_0187"
/note="Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall biogenesis
[Cell envelope biogenesis, outer membrane]; Region: WecE;
COG0399"
/db_xref="CDD:30748"
misc_feature 203777..204853
/locus_tag="YPTS_0187"
/note="3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The members of this CD are involved in various
biosynthetic pathways for secondary...; Region: AHBA_syn;
cd00616"
/db_xref="CDD:99740"
misc_feature order(203903..203908,204194..204196,204203..204205,
204266..204268,204278..204283,204698..204700)
/locus_tag="YPTS_0187"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99740"
misc_feature order(203903..203908,203978..203980,204194..204196,
204203..204205,204266..204268,204281..204283)
/locus_tag="YPTS_0187"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99740"
misc_feature 204281..204283
/locus_tag="YPTS_0187"
/note="catalytic residue [active]"
/db_xref="CDD:99740"
gene 204873..206129
/locus_tag="YPTS_0188"
/db_xref="GeneID:6260696"
CDS 204873..206129
/locus_tag="YPTS_0188"
/note="PFAM: polysaccharide biosynthesis protein;
KEGG: yps:YPTB0176 putative PST family O-antigen export
(flippase)"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein"
/protein_id="YP_001870642.1"
/db_xref="GI:186893530"
/db_xref="InterPro:IPR002259"
/db_xref="InterPro:IPR002797"
/db_xref="GeneID:6260696"
/translation="MSLAKASIWTACSTLIKIGVGLLVVKLLAVTFGPSGVGQAGNFR
QLIIVLGVLSGAGIFNGITKYVAEYHQQPERLRAMLGTSSTIVLGFSTLLALVFLLAA
KPVSIALFGHADYQNVVRAIAFIQMGIAYGNLFLAILKGYRDAMGNALAIIGGSLIGV
VAYYICFQIGGYSGALVGLGLVPALVVLPAAAMLYRRRTIPLRYLKPHWDKALASHLG
KFTLMALITSVTLPVAYVMMRHLLANNYGWDAVGIWQGVSSISDAYLQFITASFTVYL
LPTLSRLKDKGAISREILRSLKFVLPAVAAASLTVWLLRDFAIWLLFSHQFTAMRDLF
AWQLVGDVLKVGSYVFGYLVIAKASLRFYILAEVSQFLLLTGFAYWLIPMNGSLGAAQ
AYMATYIVYFALCSCAFLVYRRHSAP"
misc_feature 204873..206120
/locus_tag="YPTS_0188"
/note="O-antigen translocase; Provisional; Region:
PRK15099"
/db_xref="CDD:185054"
misc_feature 204957..206123
/locus_tag="YPTS_0188"
/note="Membrane protein involved in the export of
O-antigen and teichoic acid [General function prediction
only]; Region: RfbX; COG2244"
/db_xref="CDD:32425"
gene 206152..207237
/locus_tag="YPTS_0189"
/db_xref="GeneID:6260697"
CDS 206152..207237
/locus_tag="YPTS_0189"
/note="catalyzes the synthesis of a lipid-linked
intermediate involved in ECA synthesis"
/codon_start=1
/transl_table=11
/product="4-alpha-L-fucosyltransferase"
/protein_id="YP_001870643.1"
/db_xref="GI:186893531"
/db_xref="InterPro:IPR009993"
/db_xref="GeneID:6260697"
/translation="MITLTHVLGSDIPHHNLTVLRFFNDVLAKCLPVEQVRHFMVAAK
ETAPFSSFPQLDINTYSDKKALAEAVIARAQADRSARFFWHGQFNATLWLALLSGKIK
PGQVYWHVWGADLYEDAKSLKFRLFYLLRRIAQGRVGHVFATRGDLIHYQQRHPRVPA
SLLYFPTRMDPALTAINIDKPLAGPMTILVGNSGDTTNRHIEALKAIHQQFGPDVRVI
IPMGYPANNEAYIEQVRQAGLALFSQDNLRILTEQIPFDDYLNILRECDLGYFIFNRQ
QGIGTLCLLTQFGVPFVLSRKNPFWQDLAEQHIPVFFYGDTLDEPLIREAQRQLAGLD
KQAIAFFNPNYIEGWKQALALAAGEHP"
misc_feature 206152..207234
/locus_tag="YPTS_0189"
/note="4-alpha-L-fucosyltransferase glycosyl transferase
group 56; Region: Glyco_transf_56; pfam07429"
/db_xref="CDD:116050"
gene 207234..208598
/locus_tag="YPTS_0190"
/db_xref="GeneID:6260698"
CDS 207234..208598
/locus_tag="YPTS_0190"
/note="enterobacterial common antigen polymerase"
/codon_start=1
/transl_table=11
/product="putative common antigen polymerase"
/protein_id="YP_001870644.1"
/db_xref="GI:186893532"
/db_xref="InterPro:IPR010691"
/db_xref="GeneID:6260698"
/translation="MTLGQFGGLFCIYLIAVIFILTLTYQEFRRVKFNFNVLFSMLYL
LTFYFGFPLTCMLVFQFGVAVVPVEYLLYAMLSATAFYGIYYVTYKTRLRQPRSQPRT
PIFTMNRVETNLTWVLLALVAVGTVGIFFMQNGFLLFKLDSYSKIFSSDVSGVALKRF
FYFFIPAMLVVYFLKQDRRAWFFFLASTVAFGILTYVIVGGTRANIIIAFSLFLFIGI
VRGWITLWMLAAAGVFGIVGMFWLALKRYGLDVNGAEAFYTFLYLTRDTFSPWENLGL
LLQNYDKIDFQGLAPIVRDFYVFIPSALWPERPDLVLNTANYFTWDVLDNHSGLAISP
TLIGSLVVMGGVLFIPLGAIVVGLIIKWFDWLYEQGKAESNRYKAAILQSFCFGAVFN
IIVLAREGLDSFVSRVVFFCVIFGACLVLAKLLYWLFDTAGLIKRQGIKSNRLSTPNA
GNQL"
misc_feature 207234..208571
/locus_tag="YPTS_0190"
/note="putative common antigen polymerase; Provisional;
Region: PRK02975"
/db_xref="CDD:179518"
gene 208607..209347
/locus_tag="YPTS_0191"
/db_xref="GeneID:6260699"
CDS 208607..209347
/locus_tag="YPTS_0191"
/EC_number="2.4.1.187"
/note="TIGRFAM: glycosyl transferase, WecB/TagA/CpsF
family;
PFAM: glycosyl transferase WecB/TagA/CpsF;
KEGG: ypi:YpsIP31758_0193 glycosyl transferase,
WecB/TagA/CpsF family"
/codon_start=1
/transl_table=11
/product="putative UDP-N-acetyl-D-mannosaminuronic acid
transferase"
/protein_id="YP_001870645.1"
/db_xref="GI:186893533"
/db_xref="InterPro:IPR004629"
/db_xref="GeneID:6260699"
/translation="MEPNTVIPKYNVRGFEIWGFRDMAQVLDHLLGSGPVKTGTLVAM
NAEKLLKAEDDTALCELIKNAEYLYADGISMVRAIRRKYPQAELSRVAGADLWEALMQ
RAGQQGTPVFLVGGKPDVLAETEAKLRAQWNVNLVGSQDGYFTPEQREALFARIAASG
AAIVTVAMGSPKQEIFMRDCRKFYPDALYMGVGGTYDVFTGHVKRAPKIWQNMGLEWL
YRLLAQPSRIRRQLKLLKFVGYYYSGRL"
misc_feature 208790..209296
/locus_tag="YPTS_0191"
/note="The glycosyltransferase WecG/TagA superfamily
contains Escherichia coli WecG, Bacillus subtilis TagA and
related proteins. E. coli WecG is believed to be a
UDP-N-acetyl-D-mannosaminuronic acid transferase, and is
involved in enterobacterial common...; Region:
Glyco_transf_WecG_TagA; cd06533"
/db_xref="CDD:119439"
gene 209901..211292
/locus_tag="YPTS_0192"
/db_xref="GeneID:6260700"
CDS 209901..211292
/locus_tag="YPTS_0192"
/note="uncharacterized member of the amino
acid-polyamine-organocation (APC) superfamily of amino
acid transporters; unknown function"
/codon_start=1
/transl_table=11
/product="putative transport protein YifK"
/protein_id="YP_001870646.1"
/db_xref="GI:186893534"
/db_xref="InterPro:IPR004840"
/db_xref="InterPro:IPR004841"
/db_xref="GeneID:6260700"
/translation="MADNAEKKGLHRGLEARHIELIALGGTIGVGLFMGSASTLKWAG
PSVLLAYIIAGLFVFFIMRAMGEMLYLEPVAGSFAVYAHKYLSPYFGYLTAWGYWFMW
IAVGISEITAIGVYVQFWFPEIPQWLPAIAGVAIVALANLAAVKLYGELEFWFAMIKV
TTIIVMILVGLGVIFFGFGNHGQPIGFDNLTAHGGFFAGGWKGFLFALCIVVASYQGV
ELVGITAGEARNPQVTLRRAINNILWRILIFYVGAIFVIVTIFPWNGIGTEGSPFVLT
FAKIGIVAAAGIINFVILTAALSGCNSGMYSGGRMLYALAKNRQLPAGLTKLSASGVP
VYCIAITILCLLVGSSLNYIIPNPQQVFVYVYSASVLPGMVPWFVVLVCQLRFRQVHK
AALQQHPFKSILFPYVNYLTIAFLICVLVGMGINPDTRLSLLVGAIFLALVTGCYFVL
GMHKPKAMEAERL"
misc_feature 209901..211286
/locus_tag="YPTS_0192"
/note="putative transport protein YifK; Provisional;
Region: PRK10746"
/db_xref="CDD:182694"
gene 211441..211517
/locus_tag="YPTS_R0004"
/note="tRNA-Arg1"
/db_xref="GeneID:6260701"
tRNA 211441..211517
/locus_tag="YPTS_R0004"
/product="tRNA-Arg"
/db_xref="GeneID:6260701"
gene 211601..211676
/locus_tag="YPTS_R0005"
/note="tRNA-His1"
/db_xref="GeneID:6260702"
tRNA 211601..211676
/locus_tag="YPTS_R0005"
/product="tRNA-His"
/db_xref="GeneID:6260702"
gene 211693..211779
/locus_tag="YPTS_R0006"
/note="tRNA-Leu1"
/db_xref="GeneID:6260703"
tRNA 211693..211779
/locus_tag="YPTS_R0006"
/product="tRNA-Leu"
/db_xref="GeneID:6260703"
gene 211855..211931
/locus_tag="YPTS_R0007"
/note="tRNA-Pro1"
/db_xref="GeneID:6260704"
tRNA 211855..211931
/locus_tag="YPTS_R0007"
/product="tRNA-Pro"
/db_xref="GeneID:6260704"
gene complement(212755..213975)
/locus_tag="YPTS_0193"
/db_xref="GeneID:6260705"
CDS complement(212755..213975)
/locus_tag="YPTS_0193"
/note="TIGRFAM: HemY protein;
PFAM: HemY domain protein; Tetratricopeptide TPR_2 repeat
protein;
KEGG: yps:YPTB0181 putative protoheme IX biogenesis
protein"
/codon_start=1
/transl_table=11
/product="putative protoheme IX biogenesis protein"
/protein_id="YP_001870647.1"
/db_xref="GI:186893535"
/db_xref="InterPro:IPR005254"
/db_xref="InterPro:IPR010817"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:6260705"
/translation="MLRVLLLFLVLTVGIVLGPMLAGHQGYVLIQTDNYNVTTSVTGL
AIMLVLLLVAFFIVEWVLRRIFRTGARTRGWFLGRKRTRARNQMKAALIKLAEGDFLQ
VEKLLTRNADHAEQPMVNYLLAAEAAQQRGDEFRTNQYLERAAEVADGDQLPVNITRV
RIQLAQGHIHAARHGVDRLLDQAPRHPEVLRLAEQAYLRSGAYRSLLDILPAMSKTQI
HTPEEVAALEQQAYIGIMNQCMADEGSEGLKRWWKDQSRKVRNEIPLQVALAEHLIEC
DDHDVAQKIILDSLKHQYDERLVLLIPRLKAGNPEPLEKSLRQQIKQHGATPLLNSTL
GQLMLKHGEWEKASEAFKAALAQRPDGYDYAWLADALDKLHRPEDAAQARREGLLLTL
RQNGESSALTKLIH"
misc_feature complement(212782..213924)
/locus_tag="YPTS_0193"
/note="putative protoheme IX biogenesis protein;
Provisional; Region: PRK10747"
/db_xref="CDD:182695"
misc_feature complement(213577..213900)
/locus_tag="YPTS_0193"
/note="HemY protein N-terminus; Region: HemY_N; pfam07219"
/db_xref="CDD:191703"
gene complement(213978..215102)
/locus_tag="YPTS_0194"
/db_xref="GeneID:6260706"
CDS complement(213978..215102)
/locus_tag="YPTS_0194"
/note="PFAM: protein of unknown function DUF513 hemX;
KEGG: yps:YPTB0182 putative uroporphyrinogen III
C-methyltransferase"
/codon_start=1
/transl_table=11
/product="putative uroporphyrinogen III
C-methyltransferase"
/protein_id="YP_001870648.1"
/db_xref="GI:186893536"
/db_xref="InterPro:IPR007470"
/db_xref="GeneID:6260706"
/translation="MTEQNTPSAPVEEPTTAVERPQQPEPKGHREKRTGPILGVIAIA
LVIALGAGLYYHGQQQAQLQSAENIALQEQLVALKQTLLQEKQQLESLLQQQGKALES
AENQQASLTRQLNELQEKVATISGSDAKTWLLAQADFLVKMAGRKLWSDQDVTTAVTL
LKSADASLADMNDPSLIDVRRAITEDISALSAVSQVDFDGIILKLNQLSNQVDNLRLA
DNNIDDSPMDANSDELSSSLSEWRQNLSKSWRSFMSDFISIRRRDSSAEPLLAPNQDV
YLRENIRSRLLVAAQAVPRHQDEVYKQSLETISTWVRAYFDVNDPSTKAFLDELENLS
QQPISMDVPDQLKSQPILEKLMQTRVRNLLAQTPVDAQGE"
misc_feature complement(213981..215102)
/locus_tag="YPTS_0194"
/note="putative uroporphyrinogen III C-methyltransferase;
Provisional; Region: PRK10920"
/db_xref="CDD:182839"
misc_feature complement(214002..215102)
/locus_tag="YPTS_0194"
/note="Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism]; Region: HemX; COG2959"
/db_xref="CDD:32779"
gene complement(215133..215882)
/gene="hemD"
/locus_tag="YPTS_0195"
/db_xref="GeneID:6260707"
CDS complement(215133..215882)
/gene="hemD"
/locus_tag="YPTS_0195"
/EC_number="4.2.1.75"
/note="catalyzes the formation of uroporphyrinogen-III
from hydroxymethylbilane; functions in tetrapyrrole and
heme biosynthesis"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen-III synthase"
/protein_id="YP_001870649.1"
/db_xref="GI:186893537"
/db_xref="InterPro:IPR003754"
/db_xref="GeneID:6260707"
/translation="MTILVTRPSPAGEQLVTRLRALGRVAYHAPLIDFSPGRDLPKLP
ELLQDMRAGDLVFALSQNAVRYANPLLKRNKLSWPVQLSYYAIGRTTALALHTASRLH
VTFPPMGETSEMLLSLPLLQNLAGKKALLLRGNGGRELLGASLAERGAAVTFCECYQR
SPIYYDGSEQSAHWQRAGVDILVVTSGEMLQQIYTLVPDYYRSSWLLRCRLIVVSDRL
AALATQMGWTEVRVAENADNDALIRALQDLQ"
misc_feature complement(215136..215882)
/gene="hemD"
/locus_tag="YPTS_0195"
/note="uroporphyrinogen-III synthase; Reviewed; Region:
hemD; PRK05928"
/db_xref="CDD:180313"
misc_feature complement(215148..215876)
/gene="hemD"
/locus_tag="YPTS_0195"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature complement(order(215316..215330,215403..215405,
215409..215411,215481..215483,215613..215615,
215697..215705,215862..215864))
/gene="hemD"
/locus_tag="YPTS_0195"
/note="active site"
/db_xref="CDD:119440"
gene complement(215879..216820)
/gene="hemC"
/locus_tag="YPTS_0196"
/db_xref="GeneID:6260708"
CDS complement(215879..216820)
/gene="hemC"
/locus_tag="YPTS_0196"
/EC_number="2.5.1.61"
/note="transformation of porphobilinogen to
hydroxymethylbilane in porphyrin biosynthesis"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_001870650.1"
/db_xref="GI:186893538"
/db_xref="InterPro:IPR000860"
/db_xref="GeneID:6260708"
/translation="MLDKIIRIATRQSPLALWQAHYVQHLLQANHPGLQIELVPMVTR
GDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVAICERE
DPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDLIIRDLRGNVGTRLAKLD
NGDYQAIILAVAGLKRLGLETRIRYAMSAEESLPAVGQGAVGIECRLDDDHTRQLLAP
LNHRHTELRVCAERAMNIRLEGGCQVPIGSYAELEGDTLWLRALVGAPDGSQMIRGER
RGPAAEAEQMGIELADELLSRGAREILAAVYLDNPAR"
misc_feature complement(215933..216811)
/gene="hemC"
/locus_tag="YPTS_0196"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:178840"
misc_feature complement(215933..216805)
/gene="hemC"
/locus_tag="YPTS_0196"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cd00494"
/db_xref="CDD:29604"
misc_feature complement(order(216002..216004,216008..216010,
216017..216019,216026..216028,216041..216043,
216077..216079,216083..216085,216095..216097,
216116..216118,216125..216130,216140..216142,
216149..216151,216170..216172,216224..216247,
216293..216298,216305..216307,216368..216370,
216407..216409,216419..216424,216428..216430,
216503..216520,216524..216529,216554..216556,
216560..216577,216767..216769,216782..216784))
/gene="hemC"
/locus_tag="YPTS_0196"
/note="domain interfaces; other site"
/db_xref="CDD:29604"
misc_feature complement(order(216095..216097,216224..216229,
216236..216238,216293..216295,216302..216304,
216311..216319,216356..216358,216377..216379,
216425..216430,216434..216442,216569..216574,
216578..216580,216764..216766,216776..216778))
/gene="hemC"
/locus_tag="YPTS_0196"
/note="active site"
/db_xref="CDD:29604"
gene 217314..219866
/gene="cyaA"
/locus_tag="YPTS_0197"
/db_xref="GeneID:6260709"
CDS 217314..219866
/gene="cyaA"
/locus_tag="YPTS_0197"
/EC_number="4.6.1.1"
/note="catalyzes transfer of adenylyl group of ATP from
pyrophosphate to the 3'-hydroxyl group to form cyclic AMP"
/codon_start=1
/transl_table=11
/product="adenylate cyclase"
/protein_id="YP_001870651.1"
/db_xref="GI:186893539"
/db_xref="InterPro:IPR000274"
/db_xref="GeneID:6260709"
/translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQKVYSLLPILLHC
HHPQMPGYLDGNVPHGVCLFTPNEIQQDYLADVEARWGEPLAPSAGGELPITGVYSMG
STSSIGQCHTSDLDIWVCHQAWLDTEERNQLQQKCSLLEKWAASMGVEVSFFLVDENR
FRHNASGSLGGEDCGSTQHILLLDEFYRSAVRLAGKRILWNMVPVKEEEHYDDYVLSL
YAQGVLTPNEWLDLGGLSTLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP
NSQLLAMEIKQHLHAGEIVSFGLDAYCMMLDRVTRYLIQINDTTRLNLVRRCFYLKVC
EKLSRTPASTGWRREVLSQLVSEWGWSNEKLAVLDNRANWKIERVREAHNELLDAMMQ
SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEEHLT
FIHVPAGRANRPGWYLYNQAPSMDAIVSHQPLEYNRYLNKLVSWAYFNGLLTSKTHLH
IKSANLCDTVKLQELVTDISHHFPLRLAAPTPKALYSPCEIRHLAIIVNLEHDPTTTF
RNQVVHFDFRKLDVFSFGEQQQCLVGSIDLLYRNSWNEVRTLHFSGEQAVLEALKTIL
GKMHQDAAPPESVDVFCYSQHLRGLIRTRIQQLVSECIDLRLSSTRQEPGRFKAVRVS
GQTWGLFFERLSVSVQKLENAVEFYGAISNNKLHGLSVQVETNQIHLPPVVDGFASEG
IIQFFFEGTADEKGFNIYILDEANRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS
SFINFNLPQFYQIVQLDGRTQVIPFRSNTLSQLCANIAEKEASLPTKQCQLH"
misc_feature 217314..219809
/gene="cyaA"
/locus_tag="YPTS_0197"
/note="adenylate cyclase; Provisional; Region: cyaA;
PRK09450"
/db_xref="CDD:181866"
misc_feature 217314..217913
/gene="cyaA"
/locus_tag="YPTS_0197"
/note="Adenylate cyclase NT domain; Region: Adenyl_cycl_N;
pfam12633"
/db_xref="CDD:204990"
misc_feature 217995..219803
/gene="cyaA"
/locus_tag="YPTS_0197"
/note="Adenylate cyclase, class-I; Region: Adenylate_cycl;
pfam01295"
/db_xref="CDD:189931"
gene complement(219902..220225)
/locus_tag="YPTS_0198"
/db_xref="GeneID:6260710"
CDS complement(219902..220225)
/locus_tag="YPTS_0198"
/note="KEGG: ypi:YpsIP31758_0202 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870652.1"
/db_xref="GI:186893540"
/db_xref="GeneID:6260710"
/translation="MSHYLYLNEPVDKRHLLFMQNNFDEVFTAIEKRELTVNIYRKTR
PENQEELLIMSKDEPVIKLDVDILAASLEHNKKMMSSKHSKTNINNSHCYQRQSSLFL
IRDSQ"
gene complement(220386..221594)
/locus_tag="YPTS_0199"
/db_xref="GeneID:6260711"
CDS complement(220386..221594)
/locus_tag="YPTS_0199"
/note="PFAM: transposase mutator type;
KEGG: yps:YPTB3311 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase mutator type"
/protein_id="YP_001870653.1"
/db_xref="GI:186893541"
/db_xref="InterPro:IPR001207"
/db_xref="GeneID:6260711"
/translation="MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELT
EHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQ
MDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALY
PIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTEL
KNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSG
LKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYT
TNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFII
EFGDRLSDHL"
misc_feature complement(220410..221531)
/locus_tag="YPTS_0199"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3328"
/db_xref="CDD:33137"
misc_feature complement(220815..221039)
/locus_tag="YPTS_0199"
/note="MULE transposase domain; Region: MULE; pfam10551"
/db_xref="CDD:204511"
gene complement(221642..222781)
/locus_tag="YPTS_0200"
/db_xref="GeneID:6260712"
CDS complement(221642..222781)
/locus_tag="YPTS_0200"
/note="PFAM: pentapeptide repeat protein;
KEGG: ypi:YpsIP31758_0202 hypothetical protein"
/codon_start=1
/transl_table=11
/product="pentapeptide repeat-containing protein"
/protein_id="YP_001870654.1"
/db_xref="GI:186893542"
/db_xref="InterPro:IPR001646"
/db_xref="GeneID:6260712"
/translation="MGPLSSPSNVYSIPNSEPGKNTFLDDEEKGFAILMKKISKDVSQ
ADQHDLQRLKRAVLENICEDNTASTTLMFSGMDFRGVDLSNLNLSGAELDFTDLSDTN
MTNTNLKKAFICNAKLNNIHWENTDITDISIELDDIHLLPLTAPEQYKMLEKNVEIIE
NYNDGYKEIDKIEKFKEVLDVKNKIQQRFHNLDNKQLQILLPCLYVEAAHRLNPVMAY
REKDKGYSATEENDNVLMIEGYTSLLSTLNNALTPNENQCHAERVKNIALGIEKLIEI
LLGSNTLCIENLTSYFRVHNSQIYKFKTLHKEIEKGKLTLNALKYDIGLTIDTNGEVT
FNGVIDNTIENKNKILYEFSNKLVSAHAKNDIVEIFKLETVNNIV"
misc_feature complement(222308..>222625)
/locus_tag="YPTS_0200"
/note="Pentapeptide repeats containing protein [Function
unknown]; Region: COG1357"
/db_xref="CDD:31548"
misc_feature complement(222455..222565)
/locus_tag="YPTS_0200"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
gene complement(222967..223290)
/gene="cyaY"
/locus_tag="YPTS_0201"
/db_xref="GeneID:6260713"
CDS complement(222967..223290)
/gene="cyaY"
/locus_tag="YPTS_0201"
/note="defects in the mitochondrial frataxin protein cause
Friedreich ataxis which is an autosomal recessive
neurodegenerative disease; based on phylogenomic
distribution this protein may have a role in iron-sulfur
cluster protein assembly"
/codon_start=1
/transl_table=11
/product="frataxin-like protein"
/protein_id="YP_001870655.1"
/db_xref="GI:186893543"
/db_xref="InterPro:IPR002908"
/db_xref="GeneID:6260713"
/translation="MNDSEFHQLADQLMLYIEETLDGFTGDSDIDYETNGGVMTLTFE
NGSKIVINRQEPLHQVWLATKAGGYHFNYRDGHWYCSRSGEEFFAKLSEAATTQAGEE
VSFSE"
misc_feature complement(222976..223290)
/gene="cyaY"
/locus_tag="YPTS_0201"
/note="Frataxin is a nuclear-encoded mitochondrial protein
implicated in Friedreich's ataxia (FRDA), an human
autosomal recessive neurodegenerative disease; Frataxin is
found in eukaryotes and in purple bacteria; lack of
frataxin causes iron to accumulate in...; Region:
Frataxin; cd00503"
/db_xref="CDD:29607"
misc_feature complement(order(223198..223200,223204..223206,
223222..223227,223234..223236,223246..223248,
223255..223260,223282..223284))
/gene="cyaY"
/locus_tag="YPTS_0201"
/note="putative iron binding site [ion binding]; other
site"
/db_xref="CDD:29607"
gene 223442..223642
/locus_tag="YPTS_0202"
/db_xref="GeneID:6260714"
CDS 223442..223642
/locus_tag="YPTS_0202"
/note="KEGG: yps:YPTB0189 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870656.1"
/db_xref="GI:186893544"
/db_xref="GeneID:6260714"
/translation="MKKELRWPMAAMMVLALAGCGLKGPLYFPPADKPPVDAAPPESG
QVEKTQQDLSATPQTPSTAESQ"
misc_feature 223442..223624
/locus_tag="YPTS_0202"
/note="Predicted small periplasmic lipoprotein [Cell
motility and secretion]; Region: COG5567"
/db_xref="CDD:35126"
gene 223810..224634
/gene="dapF"
/locus_tag="YPTS_0203"
/db_xref="GeneID:6260715"
CDS 223810..224634
/gene="dapF"
/locus_tag="YPTS_0203"
/EC_number="5.1.1.7"
/note="involved in lysine biosynthesis; DAP epimerase;
produces DL-diaminopimelate from LL-diaminopimelate"
/codon_start=1
/transl_table=11
/product="diaminopimelate epimerase"
/protein_id="YP_001870657.1"
/db_xref="GI:186893545"
/db_xref="InterPro:IPR001653"
/db_xref="GeneID:6260715"
/translation="MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQ
MLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTG
RMILSVTEDEQVCVNMGEPDFEPQTVPFRAAKAEKTYILRAAEHTVLCGVVSMGNPHC
VMQVDDVSVANVALLGPVLENHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACG
SGACAAVAVGVVQDLLNENVHVELPGGSLHIRWQGPGHPLYMTGPATHVYDGFIHL"
misc_feature 223810..224631
/gene="dapF"
/locus_tag="YPTS_0203"
/note="diaminopimelate epimerase; Provisional; Region:
dapF; PRK00450"
/db_xref="CDD:179032"
misc_feature 223816..224178
/gene="dapF"
/locus_tag="YPTS_0203"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:201918"
misc_feature 224266..224610
/gene="dapF"
/locus_tag="YPTS_0203"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:201918"
gene 224699..225403
/locus_tag="YPTS_0204"
/db_xref="GeneID:6260716"
CDS 224699..225403
/locus_tag="YPTS_0204"
/note="PFAM: protein of unknown function DUF484;
KEGG: ypi:YpsIP31758_0206 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870658.1"
/db_xref="GI:186893546"
/db_xref="InterPro:IPR007435"
/db_xref="GeneID:6260716"
/translation="MKNYEEQALAGIELDDDAVMQYLLQNPDFFIRNARLVEQMHIPH
PVRGSVSLVEWQLGRQRNQIGQLEEEITLLMEQAGLNEVLFSRLLQLQANLAAADSLQ
DMLNRLQRWARDFGLAGANIRLFSDRWQIGAPSDFTHLALSRHAFEPLRIQRLGNRHH
YLGSLNGPELLLLLPQAKLVGSVALSLLGADGDLGVVIFSSRDAQHYQQGMGTVMLNQ
LSTLLPGLLARWIEPV"
misc_feature 224732..225400
/locus_tag="YPTS_0204"
/note="hypothetical protein; Provisional; Region:
PRK10963"
/db_xref="CDD:182868"
gene 225400..226311
/gene="xerC"
/locus_tag="YPTS_0205"
/db_xref="GeneID:6260717"
CDS 225400..226311
/gene="xerC"
/locus_tag="YPTS_0205"
/note="site-specific tyrosine recombinase which cuts and
rejoins DNA molecules; binds cooperatively to specific DNA
consensus sites; forms a heterotetrameric complex with
XerC; XerCD exhibit similar sequences; essential to
convert chromosome dimers to monomers during cell division
and functions during plasmid segregation; cell division
protein FtsK may regulate the XerCD complex; enzyme from
Streptococcus group has unusual active site motifs"
/codon_start=1
/transl_table=11
/product="site-specific tyrosine recombinase XerC"
/protein_id="YP_001870659.1"
/db_xref="GI:186893547"
/db_xref="InterPro:IPR002104"
/db_xref="InterPro:IPR004107"
/db_xref="InterPro:IPR011931"
/db_xref="GeneID:6260717"
/translation="MTEFSASLAPQVEAFLRYLSIERQLSPLTVTSYRRQLSALMEIG
EQMGLAHWQTLDAAQVRSLVSRSKRTGLHASSLALRLSALRSFLNWLVSQGVLPANPA
KGVSTPRSGRHLPKNIDVDEINKLLSIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMN
CKHVDLASGDVWVMGKGSKERKVPLGKTAVTWLQHWLALRELFEPQDDAIFLANTGKR
ISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT
QIYTHLDFQHLATVYDAAHPRAKRGKS"
misc_feature 225406..226302
/gene="xerC"
/locus_tag="YPTS_0205"
/note="Site-specific recombinase XerC [DNA replication,
recombination, and repair]; Region: XerC; COG4973"
/db_xref="CDD:34579"
misc_feature 225433..226272
/gene="xerC"
/locus_tag="YPTS_0205"
/note="XerD and XerC integrases, DNA breaking-rejoining
enzymes, N- and C-terminal domains. XerD-like integrases
are involved in the site-specific integration and excision
of lysogenic bacteriophage genomes, transposition of
conjugative transposons, termination...; Region:
INT_XerDC; cd00798"
/db_xref="CDD:29499"
misc_feature order(225853..225855,225925..225927,226129..226131,
226138..226140,226207..226209,226234..226236)
/gene="xerC"
/locus_tag="YPTS_0205"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29499"
misc_feature order(225853..225855,226129..226131,226138..226143,
226234..226236)
/gene="xerC"
/locus_tag="YPTS_0205"
/note="active site"
/db_xref="CDD:29499"
gene 226311..227027
/locus_tag="YPTS_0206"
/db_xref="GeneID:6260718"
CDS 226311..227027
/locus_tag="YPTS_0206"
/note="YigB; member of the haloacid dehalogenase
(HAD)-like hydrolases superfamily of protein; unknown
function"
/codon_start=1
/transl_table=11
/product="flavin mononucleotide phosphatase"
/protein_id="YP_001870660.1"
/db_xref="GI:186893548"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006439"
/db_xref="GeneID:6260718"
/translation="MHFYRPLERISAITFDLDDTLYDNRPVIARTEQQSVAFLQQYHP
NLALLQPVDFQRLRAELLAQDPGIYHDVTQWRWQAIELGLMRHGLSKAEAQAGADAAM
ANFALWRSRIDVPQATHDTLSALAEHYPLVAITNGNADPKACGLDRYFQFVLRSGPHG
RAKPFRDMYHKAANHLDIPLKHILHVGDDLTTDVAGSLRCGMQACWINDRQQNLMTAR
DSRLLPHIEISQLASLTALL"
misc_feature 226311..227024
/locus_tag="YPTS_0206"
/note="flavin mononucleotide phosphatase; Provisional;
Region: PRK10748"
/db_xref="CDD:182696"
misc_feature 226650..226931
/locus_tag="YPTS_0206"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 226713..226715
/locus_tag="YPTS_0206"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 227126..229288
/gene="uvrD"
/locus_tag="YPTS_0207"
/db_xref="GeneID:6260719"
CDS 227126..229288
/gene="uvrD"
/locus_tag="YPTS_0207"
/note="unwinds DNA duplexes with 3' to 5' polarity with
respect to the bound strand and initiates unwinding most
effectively when a single-stranded region is present;
involved in the post-incision events of nucleotide
excision repair and methyl-directed mismatch repair."
/codon_start=1
/transl_table=11
/product="DNA-dependent helicase II"
/protein_id="YP_001870661.1"
/db_xref="GI:186893549"
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR005753"
/db_xref="InterPro:IPR014016"
/db_xref="InterPro:IPR014017"
/db_xref="GeneID:6260719"
/translation="MDVSDLLDSLNEKQRDAVAAPRGNLLVLAGAGSGKTRVLVHRIA
WLLSVENASPYSIISVTFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHH
LDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIE
SYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNIL
VDEFQDTNNIQYAWIRLLAGERSNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAET
IRLEQNYRSTSIILAAANALIANNDGRMGKNLWTDGAEGEPISLYCAFNELDEARFVV
NRIKAWQDNGGALNDCAILYRSNAQSRVLEEALLQTATPYRIYGGQRFFDRQEIKDSL
AYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRAMLQEKVL
AGRAASALQRFVELIDSLARETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARIEN
LEELVTATRQYSYQDEDQDLMPLQAFLSHAALEAGDGQADAYQDAVQLMTLHSAKGLE
FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGLTRAMQKLTLCYAESRRLYGKE
VNHRPSRFIGELPQECVEEVRLRASVSRPVNHRRMGTPMHENDSGFSLGQRVRHPKFG
EGTIVNLEGSGEHNRLQVAFPGEGIKWLVAAYARLEPV"
misc_feature 227126..229285
/gene="uvrD"
/locus_tag="YPTS_0207"
/note="DNA-dependent helicase II; Provisional; Region:
uvrD; PRK11773"
/db_xref="CDD:183307"
misc_feature 227171..227356
/gene="uvrD"
/locus_tag="YPTS_0207"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature <228794..228964
/gene="uvrD"
/locus_tag="YPTS_0207"
/note="Family description; Region: UvrD_C_2; cl15862"
/db_xref="CDD:210262"
gene complement(229402..230067)
/locus_tag="YPTS_0208"
/db_xref="GeneID:6260720"
CDS complement(229402..230067)
/locus_tag="YPTS_0208"
/note="PFAM: regulatory protein TetR;
KEGG: yps:YPTB0195 putative TetR-family regulatory
protein"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001870662.1"
/db_xref="GI:186893550"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:6260720"
/translation="MNTQNKQEGFSPSLTTIRARTRRLLIDTAMSMYERGAFPSITEV
ASAAQLSRATAYRYFPTQSALVSAMVDESLGPILAWQPTQPDARQRIAELLSFAYPRM
LQHEGVLRAALHLSLQQWADARSSDSNNSSNEEKLIRGNRKRLLKLAVEPLEETLAPE
ALQRVIHAFSLIYGSEVFMVLKDIWHLDEAGIQDVTQWMGKAILLQAETDSQLAAQDK
THS"
misc_feature complement(229861..>229950)
/locus_tag="YPTS_0208"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 230495..231727
/locus_tag="YPTS_0209"
/db_xref="GeneID:6260721"
CDS 230495..231727
/locus_tag="YPTS_0209"
/note="PFAM: protein of unknown function UPF0261;
KEGG: yps:YPTB0196 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870663.1"
/db_xref="GI:186893551"
/db_xref="InterPro:IPR003006"
/db_xref="InterPro:IPR010647"
/db_xref="GeneID:6260721"
/translation="MPRHIYIATTTDTKGQELAYVSELIQATGLTTVTVDLSTKESQR
DSGADICAETVAGYHPDGRQAVFCGDRGQAINAMAIAFERFMVSRVDVAALLGMGGSG
GTALITPAMQRLPIGIPKLMVSTMASGDVSGYIGASDIAMMYSVTDIAGLNRISRRVL
SNAAHQVAGAVYFAQEASPVDDKPALGLTMFGVTTPCIQAVSAELSDEYDCLVFHATG
SGGKAMEKLAESGLLAGVLDLTTTEVCDLLFDGVLACGPERFDAIAHTHIPYVGSCGA
LDMVNFGSPATIPAKYADRLFYKHNAQVTLMRTTEQENIEMARWIGEKLNRCQGEVRF
LIPEGGFSALDAPGQPFWDEKALTAFIRTLEETVIQTDKRRVVHYPFNINDPLFAQAA
IENFKEIVNKEIVNRPSH"
misc_feature 230495..231700
/locus_tag="YPTS_0209"
/note="hypothetical protein; Provisional; Region:
PRK02399"
/db_xref="CDD:179420"
gene 231753..232583
/locus_tag="YPTS_0210"
/db_xref="GeneID:6260722"
CDS 231753..232583
/locus_tag="YPTS_0210"
/note="KEGG: ypi:YpsIP31758_0212 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870664.1"
/db_xref="GI:186893552"
/db_xref="GeneID:6260722"
/translation="MPKFQRQAILAKFREMIARREPIIGGGAGTGLSAKCEEAGGIDL
IVIYNSGRYRMAGRGSLAGLLAYGNANDIVVDMAKEVLPVVKNTPVLAGVNGTDPFCQ
FDHFLDHLKALGFSGVQNFPTVGLIDGNFRANLEETGMGYGLEVEMIRLAHQKDLLTT
PYVFSAEDAIAMTQAGADIIVPHMGLTTGGNIGADTALKLADCVPLINDWAAAAKSVR
EEVIVLCHGGPISTPEDAQYIMDHCPQCDGFYGASSMERLPTEIALTDTTQKFKNITR
"
misc_feature 231771..232574
/locus_tag="YPTS_0210"
/note="TIM-barrel signal transduction protein; Region:
TIM-br_sig_trns; pfam09370"
/db_xref="CDD:117912"
gene complement(232524..232724)
/locus_tag="YPTS_0211"
/db_xref="GeneID:6260723"
CDS complement(232524..232724)
/locus_tag="YPTS_0211"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870665.1"
/db_xref="GI:186893553"
/db_xref="GeneID:6260723"
/translation="MGAIRAKRPKKKPKSVTTSVLRILHLHLADYRTKLTKQAFHWYW
QKVSTRYIFKFLGGVSQGNFCR"
gene complement(232932..233051)
/locus_tag="YPTS_0212"
/db_xref="GeneID:6260724"
CDS complement(232932..233051)
/locus_tag="YPTS_0212"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870666.1"
/db_xref="GI:186893554"
/db_xref="GeneID:6260724"
/translation="MNRLLSQYLLGVSKAKVLIKNSARMLRREEKDCQPVKSS"
gene 233233..234183
/locus_tag="YPTS_0213"
/db_xref="GeneID:6260725"
CDS 233233..234183
/locus_tag="YPTS_0213"
/note="responsible for the influx of magnesium ions"
/codon_start=1
/transl_table=11
/product="magnesium/nickel/cobalt transporter CorA"
/protein_id="YP_001870667.1"
/db_xref="GI:186893555"
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR002523"
/db_xref="InterPro:IPR004488"
/db_xref="GeneID:6260725"
/translation="MLSAFKLHNNRLSRLELDESDDLASSLWVDLVEPEEGERERVQT
ELGQSLATRPELDDIEASARFFEDEDGLHIHSFFYYEDADDHAGNSTVAFTIRDGRLY
TLRERELPAFRLYRMRARNQTLVDGNAYELLLDLFETKIEQLADEIENIYSDLEALSR
VIMEGQQGDEYDAALSTLAEQEDIGWKVRLCLMDTQRALNFLVRKARLPSSQLEQARE
VLRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY
GMNFEFMPELRWSFGYPGAIALMIIAGLAPYLYFKRKNWL"
misc_feature 233314..234180
/locus_tag="YPTS_0213"
/note="Escherichia coli Mg2+ transporter CorA_like
subgroup; Region: EcCorA-like_1; cd12835"
/db_xref="CDD:213369"
misc_feature 233314..234180
/locus_tag="YPTS_0213"
/note="magnesium Mg(2+) and cobalt Co(2+) transport
protein (corA); Region: corA; TIGR00383"
/db_xref="CDD:129479"
misc_feature order(233320..233322,233419..233421,233455..233457,
233461..233463,233503..233505,233545..233556,
233560..233565,233650..233652,233659..233661,
233818..233823,233830..233832,233890..233892)
/locus_tag="YPTS_0213"
/note="Cl binding site [ion binding]; other site"
/db_xref="CDD:213369"
misc_feature order(233392..233394,233401..233406,233422..233424,
233428..233430,233572..233574,233584..233586,
233623..233625,233632..233634,233644..233646,
233656..233658,233665..233670,233677..233679,
233686..233691,233695..233700,233707..233709,
233755..233760,233764..233769,233776..233781,
233788..233793,233797..233802,233812..233814,
233818..233823,233830..233835,233842..233847,
233872..233877,233881..233886,233893..233898,
233902..233907,233914..233919,233923..233928,
233932..233940,233947..233970,233974..234012,
234016..234024,234028..234045,234049..234072,
234106..234111,234118..234123,234157..234159,
234166..234168)
/locus_tag="YPTS_0213"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:213369"
gene complement(234281..235171)
/locus_tag="YPTS_0214"
/db_xref="GeneID:6260726"
CDS complement(234281..235171)
/locus_tag="YPTS_0214"
/note="TIGRFAM: RarD protein, DMT superfamily transporter;
PFAM: protein of unknown function DUF6 transmembrane;
KEGG: ypi:YpsIP31758_0215 RarD protein"
/codon_start=1
/transl_table=11
/product="transporter DMT superfamily protein"
/protein_id="YP_001870668.1"
/db_xref="GI:186893556"
/db_xref="InterPro:IPR000620"
/db_xref="InterPro:IPR004626"
/db_xref="GeneID:6260726"
/translation="MDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVI
WSFFFMLILLTVSRHWPQVRDACKNRKRLLLLAVTAVLIASNWLLFIWAVNHNHMLEA
SLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAFAGVLIQLWQFGSLPVIGLGLAIT
FALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLAA
AGVITTIPLLFFTAAATRLRLSTLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFI
WAALLLFTLDALYTQRKLRR"
misc_feature complement(234284..235171)
/locus_tag="YPTS_0214"
/note="putative chloramphenical resistance permease RarD;
Provisional; Region: PRK15430"
/db_xref="CDD:185328"
misc_feature complement(234746..235144)
/locus_tag="YPTS_0214"
/note="EamA-like transporter family; Region: EamA;
cl01037"
/db_xref="CDD:207295"
gene complement(235258..235728)
/locus_tag="YPTS_0215"
/db_xref="GeneID:6260727"
CDS complement(235258..235728)
/locus_tag="YPTS_0215"
/note="PFAM: thioesterase superfamily protein;
KEGG: ypi:YpsIP31758_0216 thioesterase family protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870669.1"
/db_xref="GI:186893557"
/db_xref="InterPro:IPR003736"
/db_xref="InterPro:IPR006683"
/db_xref="GeneID:6260727"
/translation="MSVTPLTLEDARRMIGETFVYHMPFNRELGLKLVRFEQDYAEIT
FDNDDKLVGNIAQKILHGGVIAAVLDVAAGLVCVGNSLIRHEPLIQEQLQIKLAKMGT
IDLRVDYLRPGRGEHFIARSSILRSGNKVAVARVELHNEKQIHIASATATYLVG"
misc_feature complement(235264..235644)
/locus_tag="YPTS_0215"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature complement(order(235393..235404,235423..235425,
235549..235551))
/locus_tag="YPTS_0215"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature complement(order(235402..235404,235408..235422,
235531..235533,235540..235542,235546..235548))
/locus_tag="YPTS_0215"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
misc_feature complement(order(235423..235425,235504..235509,
235516..235521,235543..235545))
/locus_tag="YPTS_0215"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
gene 235950..236828
/locus_tag="YPTS_0216"
/db_xref="GeneID:6260728"
CDS 235950..236828
/locus_tag="YPTS_0216"
/EC_number="3.1.1.4"
/note="catalyzes the hydrolysis of phosphatidylcholine"
/codon_start=1
/transl_table=11
/product="phospholipase A"
/protein_id="YP_001870670.1"
/db_xref="GI:186893558"
/db_xref="InterPro:IPR003187"
/db_xref="GeneID:6260728"
/translation="MARFWQILIALLLVPTLAQAEEATIEKIHDAPAVRGSIIAAMLQ
DHDNPFLLYPYETNYLLYTYTNEINKQAISSYDWAEQANKDEVKFQLSLAFPIWRGIA
GDNSLLGASYTQRSWWQASNSEESSPFRETNYEPQLFLAWSTDYELAGWTFREVEFGF
NHQSNGKADPTSRSWNRVYTRVMAQRGNLEIDLKPWYRIPESDSKDDNPDITKYMGYY
RLKVGYALGDSVFSLDGRYNWNTGYGGAEMGWSYPITKHVRFYTQVFSGYGESMIDYN
FRQTRVGVGIMLNDVL"
misc_feature 236175..236798
/locus_tag="YPTS_0216"
/note="The outer membrane phospholipase A (OMPLA) is an
integral membrane enzyme that catalyses the hydrolysis of
acylester bonds in phospholipids using calcium as a
cofactor. The enzyme has a fold of transmembrane
beta-barrels and is widespread among...; Region: OMPLA;
cd00541"
/db_xref="CDD:29639"
misc_feature order(236220..236222,236226..236228,236232..236234,
236238..236240,236283..236285,236301..236303,
236325..236327,236334..236336,236433..236435,
236439..236441,236445..236447,236721..236723)
/locus_tag="YPTS_0216"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29639"
misc_feature order(236220..236222,236226..236228,236289..236291,
236334..236336)
/locus_tag="YPTS_0216"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29639"
misc_feature order(236433..236435,236439..236441,236475..236477)
/locus_tag="YPTS_0216"
/note="active site"
/db_xref="CDD:29639"
misc_feature order(236454..236456,236463..236465,236568..236570)
/locus_tag="YPTS_0216"
/note="calcium binding site [ion binding]; other site"
/db_xref="CDD:29639"
gene 236944..238737
/locus_tag="YPTS_0217"
/db_xref="GeneID:6260729"
CDS 236944..238737
/locus_tag="YPTS_0217"
/note="functions in blocking illegitimate recombination,
enhancing topoisomerase activity, initiating SOS signaling
and clearing blocked replication forks; component of the
RecF recombinational pathway"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecQ"
/protein_id="YP_001870671.1"
/db_xref="GI:186893559"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR002121"
/db_xref="InterPro:IPR004589"
/db_xref="InterPro:IPR006293"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:6260729"
/translation="MQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCY
QIPALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ
IKLLYIAPERLVMESFLDQLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFP
DLPVIALTATADEATRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPLDQLWRFV
QDQRGKSGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQV
VVATVAFGMGINKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAW
LRRCLEEKPAGAQQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQPCGNCDICLD
PPKRYDGLADAQKALSCVYRVGQRFGLGYIVEVLRGANNQRIREMGHDKLSVYGIGRE
QTHEHWVSVLRQLIHLGLLSQNIAQFSALQLTEAARPVLRAELPLQLAVPRIQSLKVR
SSANQKSYGGNYDRKLFAKLRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASEL
LSVNGVGQRKLERFGAPFMALIRDHVDNNDD"
misc_feature 236944..238731
/locus_tag="YPTS_0217"
/note="ATP-dependent DNA helicase RecQ; Provisional;
Region: PRK11057"
/db_xref="CDD:182933"
misc_feature 237025..237453
/locus_tag="YPTS_0217"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 237052..237066
/locus_tag="YPTS_0217"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 237340..237351
/locus_tag="YPTS_0217"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 237538..237921
/locus_tag="YPTS_0217"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(237634..237645,237703..237708,237781..237789)
/locus_tag="YPTS_0217"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(237805..237807,237868..237870,237880..237882,
237889..237891)
/locus_tag="YPTS_0217"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 238135..238410
/locus_tag="YPTS_0217"
/note="This DNA-binding domain is found in the RecQ
helicase among others and has a helix-turn-helix
structure; Region: RQC; smart00956"
/db_xref="CDD:198024"
misc_feature 238543..238707
/locus_tag="YPTS_0217"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
gene 238844..239464
/locus_tag="YPTS_0218"
/db_xref="GeneID:6260730"
CDS 238844..239464
/locus_tag="YPTS_0218"
/note="TIGRFAM: homoserine/threonine efflux pump;
PFAM: Lysine exporter protein (LYSE/YGGA);
KEGG: ypi:YpsIP31758_0219 threonine efflux protein RhtC"
/codon_start=1
/transl_table=11
/product="threonine efflux system"
/protein_id="YP_001870672.1"
/db_xref="GI:186893560"
/db_xref="InterPro:IPR001123"
/db_xref="InterPro:IPR004778"
/db_xref="GeneID:6260730"
/translation="MLMLFLTVAFIHLVALISPGPDFFFVSQTAASRSRGEAMMGVLG
ISLGIVIWAGVALMGLNLILQKMAWLHQIIMVGGGMYLCWMGWQLLKSARAKHDVAEE
EVQVVLPARGRTFIRGLLTNLSNPKAVIYFGSVFSWFVGDDVGAGARWGLFILIVGET
FLWFTVVACVFALPTMRRGYQRLSKWIDGLAGVLFAGFGIQLILSR"
misc_feature 238844..239461
/locus_tag="YPTS_0218"
/note="threonine efflux system; Provisional; Region:
PRK10229"
/db_xref="CDD:182321"
gene complement(239515..240135)
/gene="rhtB"
/locus_tag="YPTS_0219"
/db_xref="GeneID:6260731"
CDS complement(239515..240135)
/gene="rhtB"
/locus_tag="YPTS_0219"
/note="PFAM: Lysine exporter protein (LYSE/YGGA);
KEGG: yps:YPTB0204 homoserine/homoserine lactone efflux
protein"
/codon_start=1
/transl_table=11
/product="homoserine/homoserine lactone efflux protein"
/protein_id="YP_001870673.1"
/db_xref="GI:186893561"
/db_xref="InterPro:IPR001123"
/db_xref="GeneID:6260731"
/translation="MTLDWWLTYLLTTLILSLSPGSGAINTMSTAISHGTRGVVASIG
GLQLGLAVHIVLVGVGLGALVSQSLLAFEILKWLGAAYLIWLGIQQWRAAGSLDLHAL
ANSMPRRKLFKRAVFVNLTNPKSIVFLAALFPQFVLPQQPQVAQYLILGSTSVIVDII
VMIGYATLATRIARWIKSPQQMKLLNRIFGGLFMLIGALLATARKV"
misc_feature complement(239521..240078)
/gene="rhtB"
/locus_tag="YPTS_0219"
/note="homoserine/homoserine lactone efflux protein;
Provisional; Region: rhtB; PRK10520"
/db_xref="CDD:182514"
gene 240349..241344
/locus_tag="YPTS_0220"
/db_xref="GeneID:6260732"
CDS 240349..241344
/locus_tag="YPTS_0220"
/EC_number="3.1.1.5"
/note="lecithinase B; catalyzes the conversion of
1-lysophosphatidylcholine to glycerophosphocholine; can
also hydrolyze 2-acyl glycerophosphoethanolamine and other
substrates"
/codon_start=1
/transl_table=11
/product="lysophospholipase L2"
/protein_id="YP_001870674.1"
/db_xref="GI:186893562"
/db_xref="InterPro:IPR000073"
/db_xref="GeneID:6260732"
/translation="MNNWLTREEQFAAFINGPLLDFWQQRDEQTFMGVDNIPIRYVRF
RAPHHTQVVVVVPGRIESYVKYPEVAYDLFQQGYDVIVLDHRGQGRSGRMLDDHNRGH
VIKFDDYIEDFAQLVQIEITGSHYQQRFALAHSMGGAILTRFLAREPDVFNAVALCAP
MFGIHLPLPGWLARRIVNWAEGHQKLRDYYAIGTGHWRPLPYLVNMLTHSRERYRRYL
RQYSDTPEIRVGGPTYHWLRESLLVGEQIIAEAEKITTPVLLLQASEDRVVHNPAHDA
FSQAMTLAGHPCEGGRPQVIQGARHEILFERDTLRAEALSAILRFFAQHQSSVGH"
misc_feature 240349..241326
/locus_tag="YPTS_0220"
/note="lysophospholipase L2; Provisional; Region:
PRK10749"
/db_xref="CDD:182697"
misc_feature 240454..240702
/locus_tag="YPTS_0220"
/note="Putative lysophospholipase; Region: Hydrolase_4;
pfam12146"
/db_xref="CDD:204836"
gene 241379..242188
/locus_tag="YPTS_0221"
/db_xref="GeneID:6260733"
CDS 241379..242188
/locus_tag="YPTS_0221"
/note="purine and pyrimidine nucleotides are secondary
substrates; yigL expression is regulated by heat shock,
osmotic shock and starvation of glucose, phosphate or
ammonium"
/codon_start=1
/transl_table=11
/product="putative sugar phosphatase"
/protein_id="YP_001870675.1"
/db_xref="GI:186893563"
/db_xref="InterPro:IPR000150"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006379"
/db_xref="InterPro:IPR006380"
/db_xref="InterPro:IPR013200"
/db_xref="GeneID:6260733"
/translation="MYHVVASDLDGTLLSPNHTLTPYTKETLKLLTQRDVHFVFATGR
HHIDVAQIRDNLEISAFMITSNGARVHNTEGELIFSHNLDADIARDLYNLEHHNPDIL
TNVYLGDEWFMNRECPEQEEFFRESVFNYQVFEPALLPTDGVCKVYFTCEDHDKLLIL
EEAINARWGDRVNVSFSFPTCLEVMGGGVSKGHALEQVAKIIGYSLKDCIAFGDGMND
VEMLSMSGKGCIMRDAHQRLKDVLPNLEVIGSNADDAVPHYLRKMFLGKEE"
misc_feature 241379..242176
/locus_tag="YPTS_0221"
/note="putative hydrolase; Provisional; Region: PRK10976"
/db_xref="CDD:182878"
misc_feature 241388..>241618
/locus_tag="YPTS_0221"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature order(241400..241408,241502..241507)
/locus_tag="YPTS_0221"
/note="active site"
/db_xref="CDD:119389"
misc_feature 241400..241417
/locus_tag="YPTS_0221"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 241502..241504
/locus_tag="YPTS_0221"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature <241940..242056
/locus_tag="YPTS_0221"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:214172"
gene 242464..243663
/locus_tag="YPTS_0222"
/db_xref="GeneID:6260734"
CDS 242464..243663
/locus_tag="YPTS_0222"
/note="KEGG: yps:YPTB0207 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870676.1"
/db_xref="GI:186893564"
/db_xref="GeneID:6260734"
/translation="MSDINVTSPHFIPMKSPITARLDNSDLIDERPQKINFLGNKLNS
IADVNIDSKNKKITINIAEKKFSSDYIPEEYIYIAVWDAKGKMVFQKKLSDAEIKEEK
IELPFEVGYQLEMYHPIPSRLVSSPDLYSIIDSNSPFTLLVMTPLGVTNPKMESYPTD
IIEADFIHPNSVSVGVNADVIEPASTAEPTTSTPIAPDIPSASTDPIVSTSTRTGIDS
TTKLMVSFQFKLLGVCDYDIATVTIDEESKLAGIKIVTDTPHCHFGDELYASIKVTDK
QGHITFEEKLYGTNANISNTIIPFEKGYKLDIFHAEPSRLRVSSGDSDTLIPESKQNS
FIMTSIGIENTRQGSAEAIISDQFDTEKLVQDMSSFGDSSIAPVDNVYGYMGEKNHYQ
NVVSHVE"
misc_feature <242524..242922
/locus_tag="YPTS_0222"
/note="Viral enhancin protein; Region: Enhancin;
pfam03272"
/db_xref="CDD:146083"
misc_feature <243145..243498
/locus_tag="YPTS_0222"
/note="Viral enhancin protein; Region: Enhancin;
pfam03272"
/db_xref="CDD:146083"
gene complement(243737..244852)
/gene="glpQ"
/locus_tag="YPTS_0223"
/db_xref="GeneID:6260735"
CDS complement(243737..244852)
/gene="glpQ"
/locus_tag="YPTS_0223"
/note="hydrolyzes deacylated phospholipids to glycerol
3-phosphate and the corresponding alcohols; periplasmic"
/codon_start=1
/transl_table=11
/product="glycerophosphodiester phosphodiesterase"
/protein_id="YP_001870677.1"
/db_xref="GI:186893565"
/db_xref="InterPro:IPR004129"
/db_xref="GeneID:6260735"
/translation="MQTHVKTLLASLILAASMAAPAYAAKPASADKSASAIDKVVIAH
RGASGYLPEHSLPAKAMAYAQGADYLEQDLVMTKDNELVVLHDHYLDRVTDVAERFPD
RARKDGRYYAIDFTLPEIKSLKFTEGFDIDKNGKKVQSYPNRFPMGKSDFRVHTFQEE
IEFIQGLNHSTGKNTGIYPEIKAPWFHHQEGKDISTKVLEVLKEYGYTNKDDKVYLQS
FDVNELKRIKNELEPKMGMDLKLIQLIAYTDWNETYEQLPDGKWVNYNYDWMFKPGAM
KEVAHYADGIGPDYHMLVVKTSTAKDIKLTDLVKEAHASNMMVHPFTIRADRLPKYAT
DINQLFDIIYNQAQVDGVFTDFPDQGIQFLQKQQQHK"
misc_feature complement(243749..244738)
/gene="glpQ"
/locus_tag="YPTS_0223"
/note="glycerophosphodiester phosphodiesterase;
Provisional; Region: glpQ; PRK11143"
/db_xref="CDD:182992"
misc_feature complement(243779..244738)
/gene="glpQ"
/locus_tag="YPTS_0223"
/note="Glycerophosphodiester phosphodiesterase domain of
Escherichia coli (GlpQ) and similar proteins; Region:
GDPD_EcGlpQ_like; cd08600"
/db_xref="CDD:176542"
misc_feature complement(order(243887..243889,244202..244204,
244313..244315,244595..244597,244634..244636,
244640..244642,244721..244723))
/gene="glpQ"
/locus_tag="YPTS_0223"
/note="active site"
/db_xref="CDD:176542"
misc_feature complement(order(244595..244597,244721..244723))
/gene="glpQ"
/locus_tag="YPTS_0223"
/note="catalytic site [active]"
/db_xref="CDD:176542"
misc_feature complement(order(244313..244315,244634..244636,
244640..244642))
/gene="glpQ"
/locus_tag="YPTS_0223"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:176542"
gene 245477..247132
/gene="glpA"
/locus_tag="YPTS_0224"
/db_xref="GeneID:6260736"
CDS 245477..247132
/gene="glpA"
/locus_tag="YPTS_0224"
/note="anaerobic, catalyzes the conversion of glycerol
3-phosphate to dihydroxyacetone using fumarate or nitrate
as electron acceptor"
/codon_start=1
/transl_table=11
/product="sn-glycerol-3-phosphate dehydrogenase subunit A"
/protein_id="YP_001870678.1"
/db_xref="GI:186893566"
/db_xref="InterPro:IPR000447"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR007419"
/db_xref="GeneID:6260736"
/translation="MTNSSPYLETDVIIIGGGATGAGIARDCARRGLACTLLERHDIA
TGATGRNHGLLHSGARYAVTDGESARECIEENRILKRIARHCIEQTDGLFITLPEDSL
AYQLQFIARCRDAGIEAEAIDPAQALRLEPAVNPALIAAVRVPDGTVDPFRLTAANML
DAREHGANILTYHEVIGLLRQGSRINGVCVFDHKNQRKYDIHAQIVVNAAGIWGQHIA
EYADLRIRMFPAKGALLILGHRINNMVINRCRKPADADILVPGDTISLIGTTSTHINY
DQIDNMVVTAQEVDTLIREGAKLSPQLAQTRILRAYAGVRPLVASDDDPSGRNVSRGI
VLLDHASRDGVEGFITITGGKLMTYRLMAEWATDKVCEKLGISAACTTAQVPLPGSRQ
SAEQTLSKVISLPASIRGSAVYRHGDRATQLLVGNRLDNSLVCECEAVTAGEVRYAVE
SLSVNNLLDLRRRTRVGMGTCQGELCACRAAGLLSRFKVTTPQQSREQLTQFLNERWK
GVRPIAWGDALRESEFTQWVYQGLCGLDEIPATVNAREKHDEI"
misc_feature 245486..247129
/gene="glpA"
/locus_tag="YPTS_0224"
/note="sn-glycerol-3-phosphate dehydrogenase subunit A;
Provisional; Region: glpA; PRK11101"
/db_xref="CDD:182963"
misc_feature 246773..246934
/gene="glpA"
/locus_tag="YPTS_0224"
/note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD;
pfam04324"
/db_xref="CDD:202971"
gene 247122..248396
/locus_tag="YPTS_0225"
/db_xref="GeneID:6260737"
CDS 247122..248396
/locus_tag="YPTS_0225"
/EC_number="1.1.5.3"
/note="sn-glycerol-3-phosphate dehydrogenase (anaerobic);
catalyzes the formation of dihydroxyacetone from glycerol
3-phosphate; part of GlpABC complex; presumably this
subunit is responsible for membrane interactions and
contains iron-sulfur clusters"
/codon_start=1
/transl_table=11
/product="anaerobic glycerol-3-phosphate dehydrogenase
subunit B"
/protein_id="YP_001870679.1"
/db_xref="GI:186893567"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR006076"
/db_xref="GeneID:6260737"
/translation="MKFDVIIIGGGLAGLACGIRLAEQGKYCAIVSAGQNALHFSSGS
LDLLAKLPDGRAVSQPLSALSALAELAPEHPYSKMRNITQLDELVQEAEALLRRCGLD
IVGSSAENHLRLTPLGSCRPTWLSLADIPVAPLNGPLPWQRVAVIGIEGFLDFQPQMV
ASALQDQGIDATADYLHLPALDRLRDNPSEFRAVNIARILDLPENRQPLADELSRLSS
TAEMILLPACIGLDKSAPLDALRAVVGKPIQLLPTLPPSLLGMRLHQALRHRFQQLGG
LVMPGDAVLRAELVDNRITGLYSRNHGDIPLRAAQMVLASGSFFSNGLVATFDKVYEP
ILDLDILSLPHRADWSHSNLFAPQPYLQFGVNTDNHLRPLRGGVALENLHAIGAVLGG
YDPLQQGCGAGVSLTSAVFVAEQIISEMAVTL"
misc_feature 247122..248393
/locus_tag="YPTS_0225"
/note="Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism]; Region: GlpB; COG3075"
/db_xref="CDD:32889"
misc_feature 247128..248372
/locus_tag="YPTS_0225"
/note="glycerol-3-phosphate dehydrogenase, anaerobic, B
subunit; Region: glycerol3P_GlpB; TIGR03378"
/db_xref="CDD:211815"
gene 248441..249688
/gene="glpC"
/locus_tag="YPTS_0226"
/db_xref="GeneID:6260738"
CDS 248441..249688
/gene="glpC"
/locus_tag="YPTS_0226"
/note="anaerobic; with GlpAB catalyzes the conversion of
glycerol-3-phosphate to dihydroxyacetone phosphate"
/codon_start=1
/transl_table=11
/product="sn-glycerol-3-phosphate dehydrogenase subunit C"
/protein_id="YP_001870680.1"
/db_xref="GI:186893568"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR004017"
/db_xref="GeneID:6260738"
/translation="MVGDSRLTRDNSFESCIKCTVCTTYCPVAKVNPLYPGPKQAGPD
GERLRLKDPALYDDALKYCTNCKRCEVACPSDVKIGDIIQRAKASHSTNKPKLRDAIL
SHTDIMGTLSTPFAPVINAVTGLKPVRVLLDKALKIDHRRELPKYSFGTFRRWYRKQA
EKQQQYTEQVAFFHGCFVNYNHPQLGKDLVSVFNAMNIGVQLLKREKCCGVPLIVNGF
IEQAKKQARVNLESLTDTVIGRDIPVVATSSSCTFTLRDEYPHLLDVDTTPVRDKVEL
ATRYLYRLLDQGRELPLKPLFSLNPLLASQEAPLRIAYHTPCHMEKMGWTAYTLALLQ
RIPGVELVVLDSQCCGIAGTYGFKSENYATSQGIGASLFQQIEDSGVDLVITDCETCK
WQIEMSTSKKCEHPITLLARVLA"
misc_feature 248468..249685
/gene="glpC"
/locus_tag="YPTS_0226"
/note="glycerol-3-phosphate dehydrogenase, anaerobic, C
subunit; Region: glycerol3P_GlpC; TIGR03379"
/db_xref="CDD:132422"
misc_feature <248486..>248698
/gene="glpC"
/locus_tag="YPTS_0226"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature 248948..249208
/gene="glpC"
/locus_tag="YPTS_0226"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature 249374..249628
/gene="glpC"
/locus_tag="YPTS_0226"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene complement(249832..250359)
/locus_tag="YPTS_0227"
/db_xref="GeneID:6260739"
CDS complement(249832..250359)
/locus_tag="YPTS_0227"
/note="KEGG: ypi:YpsIP31758_0230 putative lipoprotein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870681.1"
/db_xref="GI:186893569"
/db_xref="GeneID:6260739"
/translation="MYKKIVRFLAVGLLVAGLSACDNSSDNNVGQTVSLLDGKVTFNL
PADLSDQSGKMGNQANNMHVYANNTGDKAVIVILGEGTNEKLEVLTNRLAEQQRARDA
NLQVVTNKTININGQPFQQLDSIITSSGQKAYSSIVMGTVGNQLMTLQITLPAENQQQ
AQTEAESIISTLKLK"
misc_feature complement(249835..250356)
/locus_tag="YPTS_0227"
/note="hypothetical protein; Provisional; Region:
PRK11615"
/db_xref="CDD:183232"
gene complement(250489..251157)
/locus_tag="YPTS_0228"
/db_xref="GeneID:6260740"
CDS complement(250489..251157)
/locus_tag="YPTS_0228"
/note="TIGRFAM: conserved hypothetical integral membrane
protein;
PFAM: protein of unknown function DUF165;
KEGG: ypi:YpsIP31758_0231 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870682.1"
/db_xref="GI:186893570"
/db_xref="InterPro:IPR003744"
/db_xref="GeneID:6260740"
/translation="MFSFTAQQRMTALVWLSLFHIVIITSSNYLVQLPIAIFGFHTTW
GAFTFPFIFLATDLTVRIFGAPLARRIILSVMVPALLISYLISALFYQGSWQGFPALT
SFNLVVARIAVASFMAYVLGQILDVQVFNRLRQRNAWWVAPTAAMFFGNISDTMAFFF
IAFYRSSDPFMAAHWVEIALVDYSFKLLICMLFFLPAYGVMLNVLLKYFARQTGQPVL
ATER"
misc_feature complement(250528..251157)
/locus_tag="YPTS_0228"
/note="hypothetical protein; Provisional; Region:
PRK11212"
/db_xref="CDD:183041"
gene 251441..251695
/locus_tag="YPTS_0229"
/db_xref="GeneID:6260741"
CDS 251441..251695
/locus_tag="YPTS_0229"
/note="TusA; transfers sulfur to TusBCD complex; involved
in thiouridation of U34 position of some tRNAs"
/codon_start=1
/transl_table=11
/product="sulfur transfer protein SirA"
/protein_id="YP_001870683.1"
/db_xref="GI:186893571"
/db_xref="InterPro:IPR001455"
/db_xref="GeneID:6260741"
/translation="MTDIFANPDKTLDALGLRCPEPVMMVRKTVRHMEEGQTLLIIAD
DPATTRDIPGFCRFMDHQLLAQDTEQTPYRYLVRKGITAG"
misc_feature 251471..251677
/locus_tag="YPTS_0229"
/note="SirA (also known as UvrY, and YhhP) belongs to a
family of two-component response regulators that controls
secondary metabolism and virulence. The other member of
this two-component system is a sensor kinase called BarA
which phosphorylates SirA. A...; Region: SirA; cd03423"
/db_xref="CDD:48209"
misc_feature order(251474..251479,251486..251488,251495..251506,
251510..251512)
/locus_tag="YPTS_0229"
/note="CPxP motif; other site"
/db_xref="CDD:48209"
gene complement(251760..254126)
/gene="zntA"
/locus_tag="YPTS_0230"
/db_xref="GeneID:6260742"
CDS complement(251760..254126)
/gene="zntA"
/locus_tag="YPTS_0230"
/note="P-type ATPase involved in the export of lead,
cadmium, zinc and mercury"
/codon_start=1
/transl_table=11
/product="zinc/cadmium/mercury/lead-transporting ATPase"
/protein_id="YP_001870684.1"
/db_xref="GI:186893572"
/db_xref="InterPro:IPR001366"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR001969"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006121"
/db_xref="InterPro:IPR006404"
/db_xref="InterPro:IPR006416"
/db_xref="InterPro:IPR008250"
/db_xref="GeneID:6260742"
/translation="MHSHSEHQKSVETNSNCGCGHTHDKHQTGCSNLATAANSDAISH
DSVSEHSHHDGESCSHTHADEADEESDRLDTTIVSGTQRFSWQVKGMDCPSCARKIEN
AISGLDGVEKVKVLFTTEKLVVDARADVRSLVQKAVIATGFSLVNTQTTAGQKNVATE
SRLREYLPLALLSTLMLISWGLSFFNTELSQTAFTITTIVGLIPFVIKSWKLIRSGTP
FAIETLMSVAAIGAVFIGATAEAAMVLLLFMVGELLESYAVNRARRGVTALMALVPEE
ALLLKDGKRTLVPVADLRPGDIIEIPPGGRLPADAELQASFASFDESALTGESIPVER
QQGEKVAAGCLSVDRAVEMCVVSEPGNNAIDRILQLIELAEERRAPIERFIDRFSRIY
TPIIILFSILVILVPPLVFAAPWEPWIYRGLTLLLIGCPCALVISTPAAITSALAAAT
RRGALIKGGAALEQLGRSQIIAFDKTGTLTEGKPKVTDVLPISGISETRLLTLAAAVE
AGSHHPLAIAIIQCAQQNQRAQQNQRAQQNTPMLPLAEERRALAGVGIEGVVNGLMVR
VSAPSKLSPALLTDEWLAQIDQLESSGKTAVVVLEDEKFIGLLALRDTLRTDAKQAID
ALKKLGIQGVMLTGDNPRAAAAIAGELGIDYRAGLLPADKVQAVMALNALQPTVMVGD
GINDAPAMKASSIGVAMGSGTDVALETADAALTHNRLTGLAEIILLSRAANANIRQNI
TIALGLKAIFLVTTLLGLTGLWLAVLADSGATALVTANALRLLRKRDV"
misc_feature complement(251766..254084)
/gene="zntA"
/locus_tag="YPTS_0230"
/note="zinc/cadmium/mercury/lead-transporting ATPase;
Provisional; Region: zntA; PRK11033"
/db_xref="CDD:182916"
misc_feature complement(253698..253874)
/gene="zntA"
/locus_tag="YPTS_0230"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature complement(order(253839..253841,253848..253856))
/gene="zntA"
/locus_tag="YPTS_0230"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature complement(252735..253400)
/gene="zntA"
/locus_tag="YPTS_0230"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature complement(252054..252440)
/gene="zntA"
/locus_tag="YPTS_0230"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
pfam12710"
/db_xref="CDD:205034"
gene complement(254540..255166)
/locus_tag="YPTS_0231"
/db_xref="GeneID:6260743"
CDS complement(254540..255166)
/locus_tag="YPTS_0231"
/note="PFAM: YhhN family protein;
KEGG: yps:YPTB0216 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870685.1"
/db_xref="GI:186893573"
/db_xref="InterPro:IPR012506"
/db_xref="GeneID:6260743"
/translation="MSWPFLAVFFSGWLFVDATYRGPRWQRWVFKPVTLLLLLLLAWQ
APALGPAGYLIVLGLLATLLADALLLLPSERLLYALGAFFLSHLLYTISFASQMTLTL
FWPLPLVLIVVGALLLAALWTQLQDMRWPVVAFIGMTLLMVWMAGEQYFARSTDLGFS
LLAGSVLLLLSHAVWLLNRYRFSFRASDAIAAGCYFIGHFLIVRSLYL"
misc_feature complement(254543..255166)
/locus_tag="YPTS_0231"
/note="Predicted membrane protein [Function unknown];
Region: COG3714"
/db_xref="CDD:33509"
gene 255456..255776
/locus_tag="YPTS_0232"
/db_xref="GeneID:6260744"
CDS 255456..255776
/locus_tag="YPTS_0232"
/note="PFAM: Domain of unknown function DUF1820;
KEGG: ypi:YpsIP31758_0235 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870686.1"
/db_xref="GI:186893574"
/db_xref="InterPro:IPR014949"
/db_xref="GeneID:6260744"
/translation="MANEQLLYRIQFINNGKNYQLYVREIGSSSLFGFIEIADFVFDS
QSTLLVDPSTEKLKTEFSGVNRSYIPLHAVIRIDSVTEKGSARISELGNNVMNFPYLP
GNKP"
misc_feature 255456..255773
/locus_tag="YPTS_0232"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4517"
/db_xref="CDD:34172"
gene 255988..256407
/locus_tag="YPTS_0233"
/db_xref="GeneID:6260745"
CDS 255988..256407
/locus_tag="YPTS_0233"
/note="KEGG: ypi:YpsIP31758_0236 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870687.1"
/db_xref="GI:186893575"
/db_xref="GeneID:6260745"
/translation="MSKLPLLFIAVVVLIVVLATRQYWQKKQQDAENDRAPVRSVQVE
VVDKREVLAPNRRSRQREEIVAEEKRYEVYFRPLSSGIEIKNSLGLSGGNEIKSGSEI
KMVLPQQEYNRIEQGAQGILRLQGTRYIGFIPDAPHP"
misc_feature 256051..256389
/locus_tag="YPTS_0233"
/note="Protein of unknown function (DUF2500); Region:
DUF2500; pfam10694"
/db_xref="CDD:151190"
gene complement(256584..256856)
/locus_tag="YPTS_0234"
/db_xref="GeneID:6260746"
CDS complement(256584..256856)
/locus_tag="YPTS_0234"
/note="PFAM: protein of unknown function DUF1145;
KEGG: ypi:YpsIP31758_0237 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870688.1"
/db_xref="GI:186893576"
/db_xref="InterPro:IPR009525"
/db_xref="GeneID:6260746"
/translation="MWINLGRLLMLGVWFFILLNLFQPYPKPLRYFIHVAMIFMVLMH
GLQLVLLKSTQPKDQPISGLQQFKIFVFGVFELLAWQKKQPQLPKK"
misc_feature complement(256593..256856)
/locus_tag="YPTS_0234"
/note="hypothetical protein; Provisional; Region:
PRK10910"
/db_xref="CDD:182831"
gene complement(256846..257508)
/gene="rsmD"
/locus_tag="YPTS_0235"
/db_xref="GeneID:6260747"
CDS complement(256846..257508)
/gene="rsmD"
/locus_tag="YPTS_0235"
/note="catalyzes the methylation of 16S rRNA at position
G966"
/codon_start=1
/transl_table=11
/product="16S rRNA m(2)G966-methyltransferase"
/protein_id="YP_001870689.1"
/db_xref="GI:186893577"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR004398"
/db_xref="InterPro:IPR016065"
/db_xref="GeneID:6260747"
/translation="MAKQPIAKRSIVKKASPQSAGQIRIIGGKWRGRKLPVPDSPGLR
PTTDRVRETLFNWLAPMIQGARCLDCFAGSGALGLEALSRYASETTLLEADRQVAKQL
SDNLTLLKAENGQVVNTNSLQWLAQPGQPFNLVFLDPPFRKGLLAETINLLEQFNWLA
ADAWIYVEAEAESAVADVPANWLLHREKIAGQVAYRLFIRQQTDLPACTSVAEQEQHH
VD"
misc_feature complement(<257086..257313)
/gene="rsmD"
/locus_tag="YPTS_0235"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(257095..257097,257146..257154,
257227..257232,257281..257301))
/gene="rsmD"
/locus_tag="YPTS_0235"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 257790..259442
/locus_tag="YPTS_0236"
/db_xref="GeneID:6260748"
CDS 257790..259442
/locus_tag="YPTS_0236"
/note="KEGG: ypg:YpAngola_A0577 cell division protein
FtsY;
TIGRFAM: signal recognition particle-docking protein FtsY;
PFAM: GTP-binding signal recognition particle SRP54 G-
domain; GTP-binding signal recognition particle SRP54
helical bundle;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="signal recognition particle-docking protein
FtsY"
/protein_id="YP_001870690.1"
/db_xref="GI:186893578"
/db_xref="InterPro:IPR000897"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004390"
/db_xref="InterPro:IPR013822"
/db_xref="GeneID:6260748"
/translation="MAKEKKRGFFSWLGLGRQSEEPAAEPLATEKEGVTEQEDVIEQT
GVIEPTDVIEQTVEHVISEKTTEAPAENAFIEVELREQVAAVIPTEPNNAIMSEGVPD
TLPERAVAESVVAELVETGDNAAIVHDEIIEPITQVTEAGGELSLVKPGIEGDTTEQG
GPTDNLPKRSLTEDNLIIDVPTPQAVVEESRVDAVEQPTETSEVEEVEEVEEVEEVEE
VEEVEEVEEVEEKIIPVAAQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKI
DDDLFEELEEQLLIADVGVETTRKIITSLTEHASRKQLKDADALYGKLKEEMSEILSK
VDKPLDVSGKSPYVILMVGVNGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQ
LQVWGERNKIAVVAQHTGADSASVIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEEL
KKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGG
VIFAIADQFEIPIRYIGVGEGIEDLRPFKADEFIEALFARED"
misc_feature 258504..259439
/locus_tag="YPTS_0236"
/note="signal recognition particle-docking protein FtsY;
Provisional; Region: PRK10416"
/db_xref="CDD:182441"
misc_feature 258543..258773
/locus_tag="YPTS_0236"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; pfam02881"
/db_xref="CDD:202445"
misc_feature 258828..259364
/locus_tag="YPTS_0236"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:48379"
misc_feature 258846..258869
/locus_tag="YPTS_0236"
/note="P loop; other site"
/db_xref="CDD:48379"
misc_feature order(258936..258938,259101..259103,259284..259286,
259293..259298)
/locus_tag="YPTS_0236"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:48379"
gene 259448..260116
/locus_tag="YPTS_0237"
/db_xref="GeneID:6260749"
CDS 259448..260116
/locus_tag="YPTS_0237"
/note="putative ATP-binding protein of an ATP-binding
cassette transporter; when bound to FtsX, FtsEX localizes
to the cell division site and plays a role in the assembly
or stability of the septal ring under low-salt growth
conditions"
/codon_start=1
/transl_table=11
/product="cell division protein FtsE"
/protein_id="YP_001870691.1"
/db_xref="GI:186893579"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR005286"
/db_xref="InterPro:IPR013505"
/db_xref="GeneID:6260749"
/translation="MIRFEQVSKAYLGGRQALQGVDFHLRPAEMAFLTGHSGAGKSTL
LKLICGIERPSAGHIWFGGHDISRLKNREVPFLRRQIGMIFQDHHLLLDRTVYDNVAM
PLIIAGASTEDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL
ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDTSLIARRRYPILTLSQGRMSGA
HHGE"
misc_feature 259448..260113
/locus_tag="YPTS_0237"
/note="cell division protein FtsE; Provisional; Region:
PRK10908"
/db_xref="CDD:182829"
misc_feature 259451..260092
/locus_tag="YPTS_0237"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature 259550..259573
/locus_tag="YPTS_0237"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(259559..259564,259568..259576,259703..259705,
259931..259936,260030..260032)
/locus_tag="YPTS_0237"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 259694..259705
/locus_tag="YPTS_0237"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 259859..259888
/locus_tag="YPTS_0237"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 259919..259936
/locus_tag="YPTS_0237"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 259943..259954
/locus_tag="YPTS_0237"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 260018..260038
/locus_tag="YPTS_0237"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 260106..261059
/gene="ftsX"
/locus_tag="YPTS_0238"
/db_xref="GeneID:6260750"
CDS 260106..261059
/gene="ftsX"
/locus_tag="YPTS_0238"
/note="putative ABC transporter, membrane protein"
/codon_start=1
/transl_table=11
/product="cell division protein FtsX"
/protein_id="YP_001870692.1"
/db_xref="GI:186893580"
/db_xref="InterPro:IPR003838"
/db_xref="InterPro:IPR004513"
/db_xref="GeneID:6260750"
/translation="MANNARKAKTKALKGGWREQWRYSWVNAIADMMRQPMATLLTVM
VISISLTLPSVCYIVWKNVSQAAEQWYPTPQLTVYLDKALDDNAAENVVVTLKAEAGV
EKVNYLSREEAMGEFRNWSGFGGALDMLEENPLPAVAIITPKLNFQSAETLNTLRDRI
SQVEGVAEVRMDDSWFARLAALTGLVGQVAAMVGVLMVVAVFLVIGNSVRLSIFSRRD
TINVMKLLGATDGFILRPFLNGGAMLGFGGAVLSLILSEALVWQLGSVVKQVATVFGT
QFTLHGLSWDESLLLVLISAMIGWIAAWLATVQHLRRFTPQ"
misc_feature 260136..261056
/gene="ftsX"
/locus_tag="YPTS_0238"
/note="cell division ABC transporter subunit FtsX;
Provisional; Region: ftsX; PRK11026"
/db_xref="CDD:182910"
misc_feature 260718..261026
/gene="ftsX"
/locus_tag="YPTS_0238"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:202350"
gene 261370..262227
/locus_tag="YPTS_0239"
/db_xref="GeneID:6260751"
CDS 261370..262227
/locus_tag="YPTS_0239"
/note="binds with the catalytic core of RNA polymerase to
produce the holoenzyme; this sigma factor is responsible
for the expression of heat shock promoters"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-32"
/protein_id="YP_001870693.1"
/db_xref="GI:186893581"
/db_xref="InterPro:IPR000943"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR012759"
/db_xref="InterPro:IPR014284"
/db_xref="GeneID:6260751"
/translation="MTKEMQTLALVPQGSLEAYIRAANAYPMLTAEEERELAERLHYQ
GDLGAAKQLILSHLRFVAHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV
SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVAKE
LGVTSKDVREMESRMSAQDMTFDPSPDDEARDGQFMAPVLYLQDKTSDFADGIEEDNW
DSHAADKLSYALEGLDERSQHIIRARWLDDENKSTLQELADQYGVSAERVRQLEKNAM
KKLRMAIEA"
misc_feature 261370..262224
/locus_tag="YPTS_0239"
/note="RNA polymerase factor sigma-32; Reviewed; Region:
PRK06596"
/db_xref="CDD:180635"
misc_feature 261526..261738
/locus_tag="YPTS_0239"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 262054..262209
/locus_tag="YPTS_0239"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(262069..262071,262099..262101,262126..262131,
262159..262161,262165..262170,262174..262182,
262186..262191,262195..262197)
/locus_tag="YPTS_0239"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(262434..262826)
/locus_tag="YPTS_0240"
/db_xref="GeneID:6260752"
CDS complement(262434..262826)
/locus_tag="YPTS_0240"
/note="PFAM: GCN5-related N-acetyltransferase;
KEGG: yps:YPTB0225 putative acetyltransferase"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_001870694.1"
/db_xref="GI:186893582"
/db_xref="InterPro:IPR000182"
/db_xref="GeneID:6260752"
/translation="MKLTIERLITLTHQDVIDLAKIWPNQQPAAWQQWITEGRPLFAA
RFNERLLGAVKVAVYDQQAELQDLCVREVTRRRGVGLYLIEETLRQLPEIKHWYLNGG
DLTAAERPQINSFMLACGFSHEAQGWRR"
misc_feature complement(262440..262823)
/locus_tag="YPTS_0240"
/note="Acetyltransferase (GNAT) domain; Region: DUF3749;
pfam12568"
/db_xref="CDD:204966"
gene 263248..264363
/locus_tag="YPTS_0241"
/db_xref="GeneID:6260753"
CDS 263248..264363
/locus_tag="YPTS_0241"
/note="PFAM: Extracellular ligand-binding receptor;
KEGG: yps:YPTB0226 ABC type periplasmic branched-chain
amino acid-binding protein"
/codon_start=1
/transl_table=11
/product="extracellular ligand-binding receptor"
/protein_id="YP_001870695.1"
/db_xref="GI:186893583"
/db_xref="InterPro:IPR000709"
/db_xref="InterPro:IPR001828"
/db_xref="GeneID:6260753"
/translation="MKLTKGKALLAGCMAMAMSHSVLAQDIKVAIVGAMSGPVAQYGD
MQFTGARQAIADINASGGIKGDKLVGVEYDDACDPKQAVAVANKVINDGIRYVIGHLC
SSSTQPASDIYEDEGVIMITPAATNADLTTRGYKMIMRTTGLDSDQGPTAAKYIVETI
KPKRIAVVHDKQQYGEGLARSVRDSLKEQGAEVVLFEGVTAGDKDFSTLVARLKKENV
DFVYFGGYYPEMGQILRQAKQAGLTARFMGPEGVGNSSLSNIAGEASEGMLVTLPKRY
DQVPANQPIVDALKAKKLDPTGPFVWTTYAALQSLTTAMERTGSKEPADLANDLKTGK
PVETVMGPLSWDDKGDLKGFEFGIFEWHAAGSSTAVK"
misc_feature 263251..264360
/locus_tag="YPTS_0241"
/note="leucine ABC transporter subunit substrate-binding
protein LivK; Provisional; Region: PRK15404"
/db_xref="CDD:185302"
misc_feature 263329..264330
/locus_tag="YPTS_0241"
/note="Type I periplasmic ligand-binding domain of ABC
(Atpase Binding Cassette)-type active transport systems
that are involved in the transport of all three branched
chain aliphatic amino acids (leucine, isoleucine and
valine); Region: PBP1_ABC_LIVBP_like; cd06342"
/db_xref="CDD:107337"
misc_feature order(263350..263352,263377..263379,263389..263391,
263398..263400,263950..263952,264013..264015,
264022..264024,264031..264036,264124..264126)
/locus_tag="YPTS_0241"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107337"
misc_feature order(263548..263556,263617..263622,263767..263769,
263923..263925,263995..263997)
/locus_tag="YPTS_0241"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107337"
gene 264544..265470
/locus_tag="YPTS_0242"
/db_xref="GeneID:6260754"
CDS 264544..265470
/locus_tag="YPTS_0242"
/note="LivHMGF is the membrane component of the LIV-I/LS
branched-chain amino acid transporter"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid transporter permease
subunit LivH"
/protein_id="YP_001870696.1"
/db_xref="GI:186893584"
/db_xref="InterPro:IPR001851"
/db_xref="GeneID:6260754"
/translation="MSEQFLYFLQQMFNGITLGSTYALIAIGYTMVYGIIGMINFAHG
EVYMISSYVSFIVIAALMMVGIDTSWLLIGCAFLVSIVIASTYGWSIERVAYKPVRRS
KRLIALISAIGMSIFLQNYVSLTQGSRDLALPSLVTGQWTLGESNGFAATISTMQLTI
WIVTFLAMLALTLFIRYSRMGRACRACAEDLKMASLLGINTDRVISLTFVIGALMAAV
AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLVLGVAEALTSAYLS
TEYKDAVSFALLIVVLLVMPTGILGRPEVEKV"
misc_feature 264586..265443
/locus_tag="YPTS_0242"
/note="Transmembrane subunit (TM) of Escherichia coli LivH
and related proteins. LivH is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivH_like;
cd06582"
/db_xref="CDD:119324"
misc_feature 265117..265173
/locus_tag="YPTS_0242"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119324"
gene 265467..266753
/gene="livM"
/locus_tag="YPTS_0243"
/db_xref="GeneID:6260755"
CDS 265467..266753
/gene="livM"
/locus_tag="YPTS_0243"
/note="Part of the ABC transporter complex LivFGHMJ and
LivFGHMK involved in the high-affinity transport of
branched-chain amino acids; LivFGHMK is specific for the
transport of leucine, while LivFGHMJ is a transporter for
leucine, isoleucine, and valine"
/codon_start=1
/transl_table=11
/product="leucine/isoleucine/valine transporter permease
subunit"
/protein_id="YP_001870697.1"
/db_xref="GI:186893585"
/db_xref="InterPro:IPR001851"
/db_xref="GeneID:6260755"
/translation="MKQLNFVNAIISSFVLLVLASFVMGLQLQLDGTRLVVQGASEVR
WLWIGAGCLVVFCFQLVRPLIQQGIKKVSGPAWVLPSFDGTTPRQKLLAAVVIIAAVA
WPFLVSRGSVDIATLTLIYVMLGLGLNVVVGLSGLLVLGYGGFYAIGAYTYALLNHYY
GLGFWESLPLAGITAALSGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG
PNGISQIPKPTLFGLEFSRTAKDGGWDTFHNFFGLTYDPSHRIIFLYLVALLLVILTL
FVINRLLRMPLGRAWEALREDEIACRSLGLSPTKIKLTAFTISAAFAGFAGTLFAARQ
GFVSPESFTFVESAFVLAIVVLGGMGSQFAVILAAVLLVVSRELMRDLNAYSMLLLGA
LMVLMMIWRPQGLLPMKRPQLKLKVADVKAKQGEQA"
misc_feature 265467..266714
/gene="livM"
/locus_tag="YPTS_0243"
/note="leucine/isoleucine/valine transporter permease
subunit; Provisional; Region: livM; PRK11301"
/db_xref="CDD:183081"
misc_feature 265470..265742
/gene="livM"
/locus_tag="YPTS_0243"
/note="Domain of unknown function (DUF3382); Region:
DUF3382; pfam11862"
/db_xref="CDD:152298"
misc_feature 265899..266687
/gene="livM"
/locus_tag="YPTS_0243"
/note="Transmembrane subunit (TM) of Escherichia coli LivM
and related proteins. LivM is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivM_like;
cd06581"
/db_xref="CDD:119323"
misc_feature 266361..266417
/gene="livM"
/locus_tag="YPTS_0243"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119323"
gene 266750..267517
/gene="livG"
/locus_tag="YPTS_0244"
/db_xref="GeneID:6260756"
CDS 266750..267517
/gene="livG"
/locus_tag="YPTS_0244"
/note="Part of the ABC transporter complexes LivFGHMJ and
LivFGHMK involved in the high-affinity transport of
branched-chain amino acids; LivFGHMK is specific for the
transport of leucine, while LivFGHMJ is a transporter for
leucine, isoleucine, and valine"
/codon_start=1
/transl_table=11
/product="leucine/isoleucine/valine transporter
ATP-binding subunit"
/protein_id="YP_001870698.1"
/db_xref="GI:186893586"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6260756"
/translation="MNGQPLLTVEGLSMRFGGLLAVNNVGLTLNQGEIVSLIGPNGAG
KTTIFNCLTGFYRPTGGTIKLRERHLEGLPGQMIARMGVIRTFQHVRLFREMTVIENL
LVAQHQHLKSGIFAGLLKTPGFRRAEADALARAATWLERVGLLALANRQAGNLAYGQQ
RRLEIARCMVTRPELLMLDEPAAGLNPKETDELNQLIMELRDQHQVSVLLIEHDMKLV
MGISDRIYVVNQGTPLAQGIPAEIRNNPDVIRAYLGE"
misc_feature 266759..267514
/gene="livG"
/locus_tag="YPTS_0244"
/note="leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional; Region: livG; PRK11300"
/db_xref="CDD:183080"
misc_feature 266768..267493
/gene="livG"
/locus_tag="YPTS_0244"
/note="The Mj1267/LivG ABC transporter subfamily is
involved in the transport of the hydrophobic amino acids
leucine, isoleucine and valine. MJ1267 is a
branched-chain amino acid transporter with 29% similarity
to both the LivF and LivG components of the E; Region:
ABC_Mj1267_LivG_branched; cd03219"
/db_xref="CDD:72978"
misc_feature 266864..266887
/gene="livG"
/locus_tag="YPTS_0244"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72978"
misc_feature order(266873..266878,266882..266890,267011..267013,
267284..267289,267386..267388)
/gene="livG"
/locus_tag="YPTS_0244"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72978"
misc_feature 267002..267013
/gene="livG"
/locus_tag="YPTS_0244"
/note="Q-loop/lid; other site"
/db_xref="CDD:72978"
misc_feature 267212..267241
/gene="livG"
/locus_tag="YPTS_0244"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72978"
misc_feature 267272..267289
/gene="livG"
/locus_tag="YPTS_0244"
/note="Walker B; other site"
/db_xref="CDD:72978"
misc_feature 267296..267307
/gene="livG"
/locus_tag="YPTS_0244"
/note="D-loop; other site"
/db_xref="CDD:72978"
misc_feature 267374..267394
/gene="livG"
/locus_tag="YPTS_0244"
/note="H-loop/switch region; other site"
/db_xref="CDD:72978"
gene 267562..268263
/gene="livF"
/locus_tag="YPTS_0245"
/db_xref="GeneID:6260757"
CDS 267562..268263
/gene="livF"
/locus_tag="YPTS_0245"
/note="with LivGHMJ and LivGHMK is part of the
high-affinity branched-chain amino acid transport system;
LivFGHMK is specific for the transport of leucine, while
LivFGHMJ is a transporter for leucine, isoleucine, and
valine"
/codon_start=1
/transl_table=11
/product="leucine/isoleucine/valine transporter
ATP-binding subunit"
/protein_id="YP_001870699.1"
/db_xref="GI:186893587"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6260757"
/translation="MLSFNQVSAHYGKIQALHQVSLHIQQGEIVTLIGANGAGKTTLL
GTLCGEPRATEGNIVFGEQDITHWQTARIMREAIAIVPEGRRVFSRMTVEENLAMGGF
FADRQQYQQRIERVYDLFPRLFERRIQRAGTMSGGEQQMLAIGRALMSQPKLLLLDEP
SLGLAPIIILQIFDTIQQLREEGMTIFLVEQNANQALKLADRGYVLENGRIVLEDTGA
ALLANEAVRSAYLGG"
misc_feature 267562..268260
/gene="livF"
/locus_tag="YPTS_0245"
/note="leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional; Region: livF; PRK11614"
/db_xref="CDD:183231"
misc_feature 267565..268230
/gene="livF"
/locus_tag="YPTS_0245"
/note="ATP-binding cassette domain of branched-chain amino
acid transporter; Region: ABC_TM1139_LivF_branched;
cd03224"
/db_xref="CDD:213191"
misc_feature 267661..267684
/gene="livF"
/locus_tag="YPTS_0245"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213191"
misc_feature order(267670..267675,267679..267687,267808..267810,
268033..268038,268132..268134)
/gene="livF"
/locus_tag="YPTS_0245"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213191"
misc_feature 267799..267810
/gene="livF"
/locus_tag="YPTS_0245"
/note="Q-loop/lid; other site"
/db_xref="CDD:213191"
misc_feature 267961..267990
/gene="livF"
/locus_tag="YPTS_0245"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213191"
misc_feature 268021..268038
/gene="livF"
/locus_tag="YPTS_0245"
/note="Walker B; other site"
/db_xref="CDD:213191"
misc_feature 268045..268056
/gene="livF"
/locus_tag="YPTS_0245"
/note="D-loop; other site"
/db_xref="CDD:213191"
misc_feature 268120..268140
/gene="livF"
/locus_tag="YPTS_0245"
/note="H-loop/switch region; other site"
/db_xref="CDD:213191"
gene 268491..268952
/locus_tag="YPTS_0246"
/db_xref="GeneID:6260758"
CDS 268491..268952
/locus_tag="YPTS_0246"
/note="KEGG: yps:YPTB0231 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870700.1"
/db_xref="GI:186893588"
/db_xref="GeneID:6260758"
/translation="MIGGTSNTMDLHGLSAVCSFAFLTADLMLNITNKNGDNHEYKVT
SSHVNNDKLQGPKGILKATKNHAELNNKNIASGEKNAIKFDQLHVREIPNREQASYID
NLSLNRNIYLDTRADRECRIPTQVISPVQKVDSGTKEPSWFSKYLCITTLY"
gene complement(269067..270173)
/locus_tag="YPTS_0247"
/db_xref="GeneID:6260759"
CDS complement(269067..270173)
/locus_tag="YPTS_0247"
/note="KEGG: yps:YPTB0232 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870701.1"
/db_xref="GI:186893589"
/db_xref="GeneID:6260759"
/translation="MNIKNKSLFIGLLLLFLQPTTAVANKWAGIYFYPLASKYSNCKM
TLSEDNHLTVSFDVTLADHLFDISNSDHLQRWQELTRSQQHIMLAQNKALLYLYFYRA
DGSIDFSLQSGEVQDMSLNGVPAQHISNYIREAIFVSTPAFSNQSYHVSFSLAVSTLK
HIRMGATIGGVLHSEGQQYSVRSPNGVAFNQSGNQCEFFDPTTEIAPAHALYIEPKFR
LGSAIWQLKSLDLDHLLDSTADNHGLHAPLVNAPANRFCIHYSSVGIQNRRYMISASN
LNGLAESSRYFQLKDNQGEHIINYKVTLKNHEDSEADFSLPKEKKFVQLKSDTSSGGE
AQMCWSPRIRVYSTDTTDKGHYTDTLNFTITPLA"
gene complement(270286..270804)
/locus_tag="YPTS_0248"
/db_xref="GeneID:6260760"
CDS complement(270286..270804)
/locus_tag="YPTS_0248"
/note="KEGG: yps:YPTB0233 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870702.1"
/db_xref="GI:186893590"
/db_xref="GeneID:6260760"
/translation="MNTIKMAITLLLLSWHTCWAATPLGDIDVKLEVTAQPRIEIEKP
HGGWYDNIKLHNSPENHAVYEVEVPVAVKLRRQEGYQISIKNPLILTRQSDAFSAIEQ
TFSPAEVRWGNNRTNLRLLSAVPESFSVPPQATRHTTTDYVLHISAKAPAGDNTAGKY
HGQLTLVFEVNS"
gene complement(270866..271513)
/locus_tag="YPTS_0249"
/db_xref="GeneID:6260761"
CDS complement(270866..271513)
/locus_tag="YPTS_0249"
/note="KEGG: yps:YPTB0234 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870703.1"
/db_xref="GI:186893591"
/db_xref="GeneID:6260761"
/translation="MKNLVFAAISLLPLSAAGVIDIQPQVVELQQENTVVTVINHGMT
AEYITVQLYRLNNPGVAPELESLTPVGYQQQPLLFATPLKLTLGPRQSGKIFLHALGA
PEQEQVYRLAVVPGNHLKISGNNTAVVGVQISYMGLIRHLPASIQHQWTHRCIAGKPE
LHNTGNTRLYWHQLQAQGQMIDDFTLYPGQHRQLAFNELQGKVEDQAVSLQCPSG"
misc_feature complement(270932..271501)
/locus_tag="YPTS_0249"
/note="putative fimbrial protein TcfA; Provisional;
Region: PRK15308"
/db_xref="CDD:185208"
gene complement(271485..272171)
/locus_tag="YPTS_0250"
/db_xref="GeneID:6260762"
CDS complement(271485..272171)
/locus_tag="YPTS_0250"
/note="KEGG: yps:YPTB0235 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870704.1"
/db_xref="GI:186893592"
/db_xref="GeneID:6260762"
/translation="MKYLYSILSIALLLAPGTATYGQLLATPTRIAVEAQEQKRTVQV
YNSGDTPLYLDITLQRVDNPGVNPERKTPISEISQPEMIFNPNRITLGPRQKRDITLI
PLKSPVQETLYRLYINPVLNIKAVGDGEDKSKVHAPMTISIGYGVLIHHLPPAAAQTR
HWQHQCSATGELALTATGTVHSKFKQLESGGNPALADSLNLYPGTALTLPVKQLNGEV
DGEKFSLRCH"
misc_feature complement(<271692..272093)
/locus_tag="YPTS_0250"
/note="P pilus assembly protein, chaperone PapD [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: FimC; COG3121"
/db_xref="CDD:32935"
misc_feature complement(<271713..272066)
/locus_tag="YPTS_0250"
/note="putative fimbrial protein TcfA; Provisional;
Region: PRK15308"
/db_xref="CDD:185208"
gene complement(272189..274522)
/locus_tag="YPTS_0251"
/db_xref="GeneID:6260763"
CDS complement(272189..274522)
/locus_tag="YPTS_0251"
/note="KEGG: yps:YPTB0236 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870705.1"
/db_xref="GI:186893593"
/db_xref="GeneID:6260763"
/translation="MAYYSKINHSLLFTLALFTLKLAHAEAVKIEYLVPMGFSAAEEN
NSLQLLGVLDSKTLPSPITFSEEKQQLQFNQQNDRHNNISEESIILLGKILSQIPYLQ
CKTGCDYTLSGHRVALDKVNNTLTITNNNNRYLMPTTTWGLVSNQSLDLRMTAAHYRA
MSVRGQSYIGLPWQSYGFASWFYNAIQSQNTLQSQNTMPSQSTYQPVNRPQYQRLTQK
GIGSWYLQKNFSALYLRTGRQNNLDNNAGSVHTLINPALDQFVTLGSQSYLAIDKPST
GSIVLYAAQDGDYEIYRDNQLIRRIPAQLGRNEIDYSQLPGGYYNVEIRLVDRLGRIV
SQENQTISNIGNQTNNGWFLTMGKGPAKGKKTPRLVQFGRSRVIESVQTNITLLKDDA
HHWAVEANVSRPLSLNKVNITPTGGLMSGEKRSGGYVRLNGGNNTLGYFSLARYQSPY
VSRYAPDSGSTSGSYTRRIGPTQLSYQFNQYRNNRQHRIQSGWDWQLPQFNLALSLGL
QNGGQWNSHNNYGVFLNTTLSFGQSNASINTAYTQQQLNTSASYQKEFIDNYGASTLG
VSGSASGKLNSVGGFAKRSGSRGDISGRVGIDNQITNGGISYNGMLALSSQGVALGRS
SYSGAALLIKAPALGGTPYSFHVEDSPITGGGIYAIPVPRYQDRFFVRTHTDRSDMDM
NIQLPVNIVRAHPGQVFSGKADITLNLLYSGFLKNAQGLPVSGVIEETGDTAYPNGLF
SINAQNRLQAITVQGPSGRYRCDMHSQPTHIYLCHAD"
misc_feature complement(272597..>273172)
/locus_tag="YPTS_0251"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:201318"
gene complement(274789..275277)
/locus_tag="YPTS_0252"
/db_xref="GeneID:6260764"
CDS complement(274789..275277)
/locus_tag="YPTS_0252"
/note="KEGG: yps:YPTB0237 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870706.1"
/db_xref="GI:186893594"
/db_xref="GeneID:6260764"
/translation="MKKTVIAIITMATLTSTAAYANTIEKDIRVEAEIISLMDVKRAD
DSNINKIKLTYDTVTNDGTYSHSEAIKVKARKQLGDKLKVSLAAPVILSEPNNNKEFT
HVEVLLDGKKLLETADTRDLIAFHGSELNAELKVSAKEPNNAVGGEKYSGVIQLRLEP
SA"
gene 275835..277154
/locus_tag="YPTS_0253"
/pseudo
/db_xref="GeneID:6260765"
gene 277452..278339
/locus_tag="YPTS_0255"
/db_xref="GeneID:6260766"
CDS 277452..278339
/locus_tag="YPTS_0255"
/note="with UgpEC is involved in the uptake of
glycerol-3-phosphate"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate transporter permease"
/protein_id="YP_001870707.1"
/db_xref="GI:186893595"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:6260766"
/translation="MSPSRPGFSCSWLPYLLVLPQLAITAIFFLWPAGEALWYSVQTL
DPFGLSSEFVGLSNFIQLFQDEYYLASFYTTLIFSALVAGIGLIVSLFLAAMVDYVLR
GSRLYQTLLILPYAVAPAVAAVLWIFLFDPGLGLITHALAKLGYSWNHAQNSGQAMFL
VVLASVWKQISYNFLFFLAALQSIPKSLVEAAAIDGAGPVRRFFNLVLPLISPVSFFL
LVVNLVYAFFDTFPVIDAATGGGPVQATTTLIYKIYREGFAGLDLSSSAAQSVILMLL
VIGLTVIQFRFVERKVRYQ"
misc_feature 277485..278312
/locus_tag="YPTS_0255"
/note="ABC-type polysaccharide transport system, permease
component [Carbohydrate transport and metabolism]; Region:
LplB; COG4209"
/db_xref="CDD:33938"
misc_feature 277665..278285
/locus_tag="YPTS_0255"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(277713..277718,277725..277730,277740..277742,
277770..277781,277785..277814,277821..277826,
277830..277832,277947..277952,277959..277961,
277965..277967,277974..277979,277983..277985,
277995..278000,278007..278009,278058..278060,
278100..278105,278112..278114,278133..278144,
278160..278165,278202..278207,278235..278240,
278247..278252,278256..278261,278268..278273,
278280..278285)
/locus_tag="YPTS_0255"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(277788..277832,278133..278150)
/locus_tag="YPTS_0255"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(277830..277832,277932..277934,278160..278162,
278196..278198,278205..278207,278235..278237)
/locus_tag="YPTS_0255"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(278010..278048,278064..278069,278079..278081)
/locus_tag="YPTS_0255"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 278336..279181
/locus_tag="YPTS_0256"
/db_xref="GeneID:6260767"
CDS 278336..279181
/locus_tag="YPTS_0256"
/note="with UgpABC is involved in uptake of
glycerol-3-phosphate"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate transporter membrane
protein"
/protein_id="YP_001870708.1"
/db_xref="GI:186893596"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:6260767"
/translation="MIENRRGLDIFCHIMLIIGGLLILFPLYVAFVAASLDDSQVFQA
PMTLIPGPHLWQNISHIWHAGVGNNSTPFGLMLLNSFVMAFAITVGKITVSILSAYAI
VYFRFPLRNLFFWLIFLTLMLPVEVRIFPTIEVIANLNLLDSYTGLTLPLMASATATF
LFRQFFMTLPDELLEAARIDGAGAMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWP
ILITSDASMGTAVAGIRSMISTSGAPTQWNQVMAAMILTLIPPVVVVLLMQRWFVRGL
VDSEK"
misc_feature 278408..279166
/locus_tag="YPTS_0256"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 278564..279028
/locus_tag="YPTS_0256"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(278612..278617,278624..278629,278642..278644,
278672..278683,278687..278716,278723..278728,
278732..278734,278789..278794,278798..278800,
278804..278806,278813..278818,278822..278824,
278834..278839,278846..278848,278897..278899,
278939..278944,278951..278953,278972..278983,
278990..278995)
/locus_tag="YPTS_0256"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(278690..278734,278972..278989)
/locus_tag="YPTS_0256"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(278732..278734,278990..278992,279026..279028)
/locus_tag="YPTS_0256"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(278849..278887,278903..278908,278918..278920)
/locus_tag="YPTS_0256"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 279188..280261
/gene="ugpC"
/locus_tag="YPTS_0257"
/db_xref="GeneID:6260768"
CDS 279188..280261
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="part of the UgpABCE glycerol-3-phosphate uptake
system"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate transporter ATP-binding
subunit"
/protein_id="YP_001870709.1"
/db_xref="GI:186893597"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013611"
/db_xref="GeneID:6260768"
/translation="MACLKLQAVTKSYDGVTPVIKQIDLDVADGEFIVMVGPSGCGKS
TLLRMVAGLERTTTGDIYIGDQRVTDLEPKDRGIAMVFQNYALYPHMNVFDNMAYGLK
IRGFGKEQIRQRVDEAARILELQPLLKRKPRELSGGQRQRVAMGRAIVREPAVFLFDE
PLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVIVMNKGVAEQIGT
PSEVYKRPASLFVASFIGSPAMNLLDGTVSPDGRTFILSDGLTLPLEIPQPQWGGRRL
TLGIRPEHIQQTTSAQGVPMNLLTLELLGADNLAHGLWGGQSIIARLSHEEMPVAGST
LHLYLPPAALHFFDTDSGLRIEP"
misc_feature 279188..280255
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 279197..279838
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two...; Region:
ABC_MalK_N; cd03301"
/db_xref="CDD:73060"
misc_feature 279296..279319
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73060"
misc_feature order(279305..279310,279314..279322,279434..279436,
279662..279667,279764..279766)
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73060"
misc_feature 279425..279436
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="Q-loop/lid; other site"
/db_xref="CDD:73060"
misc_feature 279590..279619
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73060"
misc_feature 279650..279667
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="Walker B; other site"
/db_xref="CDD:73060"
misc_feature 279674..279685
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="D-loop; other site"
/db_xref="CDD:73060"
misc_feature 279752..279772
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="H-loop/switch region; other site"
/db_xref="CDD:73060"
misc_feature 280019..280228
/gene="ugpC"
/locus_tag="YPTS_0257"
/note="TOBE domain; Region: TOBE_2; cl01440"
/db_xref="CDD:207413"
gene 280258..281007
/gene="ugpQ"
/locus_tag="YPTS_0258"
/db_xref="GeneID:6260769"
CDS 280258..281007
/gene="ugpQ"
/locus_tag="YPTS_0258"
/EC_number="3.1.4.46"
/note="hydrolyzes diesters during transport at the inner
face of the cytoplasmic membrane to glycerol-3-phosphate
and alcohol; induced when cells are starved for inorganic
phosphate"
/codon_start=1
/transl_table=11
/product="glycerophosphodiester phosphodiesterase"
/protein_id="YP_001870710.1"
/db_xref="GI:186893598"
/db_xref="InterPro:IPR004129"
/db_xref="GeneID:6260769"
/translation="MNRDWPYPPIVAHRGGGSLAPENTLAAIDVGARYGHKMIEFDAK
LSQDGQIFLLHDDTLERTSNGWGVAGELAWEKLIQLDAGDWFSKAFRGERLPLLSEVA
ARCAQHGMAANIEIKPTTGTDAPTGRAIALAARALWQGQPIPPLLSSFSVDALAAAQL
AAPELPRGLLLDKWDDNWAALTTQLDCVSLHINHKQLTAERVALLKAAGLRILVYTVN
QPERARELLNWGVDCICTDRIDLLGSDFTGC"
misc_feature 280258..281004
/gene="ugpQ"
/locus_tag="YPTS_0258"
/note="cytoplasmic glycerophosphodiester
phosphodiesterase; Provisional; Region: ugpQ; PRK09454"
/db_xref="CDD:181870"
misc_feature 280285..280974
/gene="ugpQ"
/locus_tag="YPTS_0258"
/note="Glycerophosphodiester phosphodiesterase domain in
Escherichia coli cytosolic glycerophosphodiester
phosphodiesterase UgpQ and similar proteins; Region:
GDPD_EcUgpQ_like; cd08562"
/db_xref="CDD:176505"
misc_feature order(280294..280296,280375..280377,280381..280383,
280420..280422,280600..280602,280699..280701,
280900..280902)
/gene="ugpQ"
/locus_tag="YPTS_0258"
/note="putative active site [active]"
/db_xref="CDD:176505"
misc_feature order(280294..280296,280420..280422)
/gene="ugpQ"
/locus_tag="YPTS_0258"
/note="catalytic site [active]"
/db_xref="CDD:176505"
misc_feature order(280375..280377,280381..280383,280600..280602)
/gene="ugpQ"
/locus_tag="YPTS_0258"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:176505"
gene 281108..282064
/locus_tag="YPTS_0259"
/db_xref="GeneID:6260770"
CDS 281108..282064
/locus_tag="YPTS_0259"
/note="PFAM: Auxin Efflux Carrier;
KEGG: yps:YPTB0243 possible malonate permease"
/codon_start=1
/transl_table=11
/product="auxin efflux carrier"
/protein_id="YP_001870711.1"
/db_xref="GI:186893599"
/db_xref="InterPro:IPR004776"
/db_xref="GeneID:6260770"
/translation="MPAFVVSLWHQIVLSSPLFVLLALGYALVRFGKWPSTITDGLTR
FVFSLALPAMLFRMMCDFSERPAVDARLLIAFFGSCLVVFIIGRVIAKRVFHLDGVSG
SVFALGRIFSNNVMLGLPIATIMLGEKSIPAVALVLVFNGLILWTLVTISVEWARNGS
PTMAGFVKTTRSVLTNPLIIGIISGTLFSLTGLHLPVFIDQPVSMLGQVAPPLSLIVL
GMGLAEYRVTEGWQISTAICFLKLIVQPMVIWALAWAMDLPALETQVVVLLGSMATGV
NVYLMSRQFNVLTGPAAASLVMSTVLAAVTTPLILTIIGVGI"
misc_feature 281126..282052
/locus_tag="YPTS_0259"
/note="Predicted permeases [General function prediction
only]; Region: COG0679"
/db_xref="CDD:31023"
gene 282201..282869
/locus_tag="YPTS_0260"
/db_xref="GeneID:6260771"
CDS 282201..282869
/locus_tag="YPTS_0260"
/note="KEGG: yps:YPTB0244 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870712.1"
/db_xref="GI:186893600"
/db_xref="GeneID:6260771"
/translation="MNQVDVQKDISDLIVNAFPRALWLNIQDVFHAKYEAAQQVTMGS
ALKLDGPGQLRLRPQIRHYTLNAAFKEAALSCGVIHNSVETSPKGEHFVVLSSAGVKM
SRIGLNYDEPNIKGAKHRTLLAELNESLEGYTPDLFSERTIDHGPTGTLGVLILNINP
PYHEPQSRMLDLRVVVPFSNLKGFHFNWSLTQLLERYTGEQKIIIPDNVLPTLKRHLK
DQEN"
gene 282882..284084
/locus_tag="YPTS_0261"
/db_xref="GeneID:6260772"
CDS 282882..284084
/locus_tag="YPTS_0261"
/note="PFAM: helix-turn-helix domain protein; protein of
unknown function DUF955;
KEGG: yps:YPTB0245 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870713.1"
/db_xref="GI:186893601"
/db_xref="InterPro:IPR001387"
/db_xref="InterPro:IPR010359"
/db_xref="GeneID:6260772"
/translation="MRVGISGFQPERLTQMREARGLSKINLGRLVERSPSTITKWENG
SHSPDAEGLASLGKVLNCPVSWFTKVAYERENNPVFFRTLSATAKDLCKSSEVYMGWL
QEISASLQEYLDYPNVNIPYLDVDDYRSIDDEAIERVASDCRKRWGLGIAPIQDLLLV
MENAGVVCSRFEQGSVMMDGYSQWNEKENRPYVVLASDKNNYFRSRFDAAHELGHLVL
HRYVKRLDSINFKPIEEQAHKFAACFMLPEEAFSAELPSFPSLENFVSLKSRWGMSAQ
SMILRARDLELISSIEYQRLYKSLSSRGWRKGEPLDDQRKPESVRLLPRCINLLLEST
IFSKHGFLEFVNLARGDVEDLCSLPKGFLAESAVLSFESKIQLKNSVKTLPEIDHRTN
VVDMFDRR"
misc_feature 282912..283082
/locus_tag="YPTS_0261"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(282921..282923,282933..282935,283008..283010)
/locus_tag="YPTS_0261"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(282930..282932,283005..283007)
/locus_tag="YPTS_0261"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(282951..282956,282987..282989,282996..282998,
283008..283013)
/locus_tag="YPTS_0261"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
misc_feature 283299..283910
/locus_tag="YPTS_0261"
/note="Predicted Zn peptidase [Amino acid transport and
metabolism]; Region: COG2856"
/db_xref="CDD:32684"
gene 284291..285190
/locus_tag="YPTS_0262"
/db_xref="GeneID:6260773"
CDS 284291..285190
/locus_tag="YPTS_0262"
/note="TIGRFAM: carboxylate/amino acid/amine transporter;
PFAM: protein of unknown function DUF6 transmembrane;
KEGG: ypp:YPDSF_3407 membrane protein"
/codon_start=1
/transl_table=11
/product="carboxylate/amino acid/amine transporter"
/protein_id="YP_001870714.1"
/db_xref="GI:186893602"
/db_xref="InterPro:IPR000620"
/db_xref="InterPro:IPR004779"
/db_xref="GeneID:6260773"
/translation="MLLLVITTILWAFSFSLIGEYLAGQVDSWFSVLMRVGLAALVFL
PFLRWRNIPWRVILLYMAVGSIQLGIMYLFSFRAYLYLTVPEFLLFTVMTPLYVTLIY
DLLRRQRLRWGYALSALLAVLGAAIIRYDQLSEHFWWGLALVQAANICFAIGQVGYKR
LMEVHPIPQHVAFSWFYLGAFVVAVVAWFAFGNPQRLPTTGLQWGILVWLGVGASALG
YFMWNYGATQVDAGTLGIMNNVHVPAGLLVNLAIWQEKPHWPSFIIGAAVIMASLWVH
RRWIAPHPLQTANDRKRADEQNE"
misc_feature 284321..285109
/locus_tag="YPTS_0262"
/note="Carboxylate/Amino Acid/Amine Transporter; Region:
2A78; TIGR00950"
/db_xref="CDD:162128"
gene complement(285078..286031)
/locus_tag="YPTS_0263"
/db_xref="GeneID:6260774"
CDS complement(285078..286031)
/locus_tag="YPTS_0263"
/note="PFAM: regulatory protein LysR; LysR
substrate-binding;
KEGG: ypi:YpsIP31758_0262 transcriptional regulator MetR"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_001870715.1"
/db_xref="GI:186893603"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:6260774"
/translation="MIELKHLRTLQALRNTGSLAAAATQLHQTQSALSHQFSDLEQRL
GFRLFVRKSQPLRFTTQGEILLQLAEQVLPQIKQALQTCNEPHQTALRIAIECHSCIQ
WLTPALDNFHKHWPQVTMDFKSGVTFDPQPALQQGELDLVLTSDILPRSGLHYSPMFD
FEVRLVLAPDHPLANKDRIEPEDLAPEVLMIYPVQRQRLDVWRHFLQPAGVSPSLKNV
DNTLLLIQMVSARMGIAALPHWVVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQP
VTEAFIRSARQHACDHLPFVKDAVRSNAGVPTAKPLSPQLQ"
misc_feature complement(285081..286031)
/locus_tag="YPTS_0263"
/note="DNA-binding transcriptional regulator MetR;
Provisional; Region: PRK15421"
/db_xref="CDD:185319"
misc_feature complement(285843..286022)
/locus_tag="YPTS_0263"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(285177..285761)
/locus_tag="YPTS_0263"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator metR, which regulates
the expression of methionine biosynthetic genes, contains
type 2 periplasmic binding fold; Region: PBP2_MetR;
cd08441"
/db_xref="CDD:176132"
misc_feature complement(order(285342..285347,285351..285356,
285372..285389,285660..285680,285684..285686,
285696..285698,285705..285710,285714..285719))
/locus_tag="YPTS_0263"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176132"
gene 286122..288413
/locus_tag="YPTS_0264"
/db_xref="GeneID:6260775"
CDS 286122..288413
/locus_tag="YPTS_0264"
/EC_number="2.1.1.14"
/note="catalyzes the transfer of a methyl group from
5-methyltetrahydrofolate to homocysteine to form
methionine"
/codon_start=1
/transl_table=11
/product="5-
methyltetrahydropteroyltriglutamate/homocysteine
S-methyltransferase"
/protein_id="YP_001870716.1"
/db_xref="GI:186893604"
/db_xref="InterPro:IPR002629"
/db_xref="InterPro:IPR006276"
/db_xref="InterPro:IPR013215"
/db_xref="GeneID:6260775"
/translation="MGNKTMTILNHTLGFPRVGLKRELKKAQESYWAGNSTQEELLNV
GRELRARHWQQQQQAGVDLVPVGDFAWYDHVLTTSLLLGNVPERHQNADGSIDIDTLF
RIGRGRAPTGKPAAAAEMTKWFNTNYHYMVPEFQQGQQFKLGWTQLLDEVDEALALGH
KIKPVLLGPITYLWLGKVKGEQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPAL
VLELPQEWLDAYQPAYQALQGQVKLLLTTYFDSIGHNIDTIRALPVQGLHVDVVAGHD
DLAVLNKNLPKEWLLSLGVINGRNVWRADLSSWFERLQPLVNSRPLWLGSSCSLLHSP
IDLNEETRLDAEVKSWFAFALQKCAELALLTQALNAPNDAKLAELAAYSAPIRARRSS
SRVHNAQVEQRLAAITSQDIERQLPYEARAETQRKRFNLPAWPTTTIGSFPQTTEIRG
LRLDFKQGRLDGKNYRTGISEHIKQAIAEQERLGLDVLVHGEAERNDMVEYFGEHLDG
FVFTQNGWVQSYGSRCVKPPVIIGDISRPEAITVEWAKYAQSLTEKPVKGMLTGPVTI
LCWSFPREDVSRETIAKQIALALRDEVEDLEKAGIGIIQIDEPALREGLPLRRADWQA
YLQWAVDAFKLNAAVAQNDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELL
ESFEDFAYPNEIGPGVYDIHSPNVPSVEWIEALLRKAAQRIPAERLWVNPDCGLKTRG
WPETRQALANMVLAAQRLREEQI"
misc_feature 286140..288404
/locus_tag="YPTS_0264"
/note="5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase; Provisional; Region: PRK05222"
/db_xref="CDD:179966"
misc_feature 286146..287222
/locus_tag="YPTS_0264"
/note="CIMS - Cobalamine-independent methonine synthase,
or MetE, N-terminal domain_like. Many members have been
characterized as
5-methyltetrahydropteroyltriglutamate-homocysteine
methyltransferases, EC:2.1.1.14, mostly from bacteria and
plants. This enzyme...; Region: CIMS_N_terminal_like;
cd03312"
/db_xref="CDD:48147"
misc_feature order(286185..286187,286194..286196,286485..286487,
286500..286502,286506..286508)
/locus_tag="YPTS_0264"
/note="THF binding site; other site"
/db_xref="CDD:48147"
misc_feature 287424..288389
/locus_tag="YPTS_0264"
/note="CIMS - Cobalamine-independent methonine synthase,
or MetE, C-terminal domain_like. Many members have been
characterized as
5-methyltetrahydropteroyltriglutamate-homocysteine
methyltransferases, EC:2.1.1.14, mostly from bacteria and
plants. This enzyme...; Region: CIMS_C_terminal_like;
cd03311"
/db_xref="CDD:48146"
misc_feature order(287436..287444,287595..287597,287613..287615,
287934..287936,287940..287942,288066..288068,
288072..288074,288321..288326)
/locus_tag="YPTS_0264"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48146"
misc_feature order(287688..287696,287826..287828,287946..287948)
/locus_tag="YPTS_0264"
/note="THF binding site; other site"
/db_xref="CDD:48146"
misc_feature order(288066..288068,288072..288074,288138..288140,
288321..288323)
/locus_tag="YPTS_0264"
/note="zinc-binding site [ion binding]; other site"
/db_xref="CDD:48146"
gene complement(288468..289340)
/locus_tag="YPTS_0265"
/db_xref="GeneID:6260776"
CDS complement(288468..289340)
/locus_tag="YPTS_0265"
/EC_number="3.1.1.45"
/note="PFAM: dienelactone hydrolase; BAAT/Acyl-CoA
thioester hydrolase;
KEGG: ypg:YpAngola_A3647 dienelactone hydrolase family
protein"
/codon_start=1
/transl_table=11
/product="dienelactone hydrolase"
/protein_id="YP_001870717.1"
/db_xref="GI:186893605"
/db_xref="InterPro:IPR002925"
/db_xref="InterPro:IPR014940"
/db_xref="GeneID:6260776"
/translation="MKTDQLVRLRQAAGGFTPAGTPLMATAHHTDQLHSLQTHGIHCG
ETTIPSQGDELPAYIAKPDQHTGPYPVVIVVQEIFGVHEHIQDICRRLAKQGYLAIAP
ELYFRQGDAKDYSNINDLVNNLVKKVPDRQVLVDLDHTAHWASRHGGDTKKLAITGFC
WGGRIAWLYAAHNPQLKAAVAWYGKLVGEKTLFLPKYPVDVAIDLCAPVLGLYGGKDT
SIPAEHIETMRQALRAANADAEIIVYPEAGHAFNADYRPSYHAESAQDGWQRMLDWFT
QHGVSAIPIPEETQ"
misc_feature complement(288507..289178)
/locus_tag="YPTS_0265"
/note="Dienelactone hydrolase family; Region: DLH;
pfam01738"
/db_xref="CDD:201946"
misc_feature complement(288507..>288722)
/locus_tag="YPTS_0265"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 289768..290529
/locus_tag="YPTS_0266"
/db_xref="GeneID:6260777"
CDS 289768..290529
/locus_tag="YPTS_0266"
/note="catalyzes the reversible phosphorylytic cleavage of
uridine and deoxyuridine to uracil and ribose- or
deoxyribose-1-phosphate; involved in the pyrimidine
salvage pathway"
/codon_start=1
/transl_table=11
/product="uridine phosphorylase"
/protein_id="YP_001870718.1"
/db_xref="GI:186893606"
/db_xref="InterPro:IPR000845"
/db_xref="InterPro:IPR010058"
/db_xref="GeneID:6260777"
/translation="MAKSDVFHLGLTKNDLQGATLAIVPGDPQRVEKIAKLMDNPVHL
ASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEELAQLGVRTFLRIGTTGAIQPHI
NVGDVLVTTAAVRLDGASLHFAPMEFPAVADFSCTTALVNAAKSVGATTHIGITASSD
TFYPGQERYDTFSGRVVRHFKGSMEEWQSMGVMNYEMESATLLTMCASQGLRAGMVAG
VIVNRTQQEIPNEETMKATESHAVKIVVEAARHLL"
misc_feature 289768..290526
/locus_tag="YPTS_0266"
/note="Uridine phosphorylase [Nucleotide transport and
metabolism]; Region: Udp; COG2820"
/db_xref="CDD:32648"
misc_feature 289777..290526
/locus_tag="YPTS_0266"
/note="uridine phosphorylase; Provisional; Region:
PRK11178"
/db_xref="CDD:183018"
gene 290650..291495
/locus_tag="YPTS_0267"
/db_xref="GeneID:6260778"
CDS 290650..291495
/locus_tag="YPTS_0267"
/note="KEGG: yps:YPTB0251 hypothetical protein"
/codon_start=1
/transl_table=11
/product="protein tyrosine/serine phosphatase"
/protein_id="YP_001870719.1"
/db_xref="GI:186893607"
/db_xref="GeneID:6260778"
/translation="MTMTTFSHPSLIPLDGGINFRDLGGNLAADGRRIKPGLLFRSGS
LDRLSTNDCDFLSHSNVTQIIDYRDADEVQAKPDVLWPGAHYHNIPANPLSSEVNANL
EKLTNETLATFDVRAFMFELYHRLPFNSLAYQQLVNLLQNCASTDPVASSVVHSGDVV
HGDVVHRGIVQHCAVGKDRTGVGAALVLFALGADESTVLEDYLLTETTLKPFREHMLA
ELALKLNDQALAQFTFVLSAREEFIQTTLRSIHERYGSRERWLKHEFGLGSIEREKLQ
SYFLE"
misc_feature 290683..291480
/locus_tag="YPTS_0267"
/note="Protein tyrosine/serine phosphatase [Signal
transduction mechanisms]; Region: COG2365"
/db_xref="CDD:32512"
misc_feature 290704..291267
/locus_tag="YPTS_0267"
/note="Tyrosine phosphatase family; Region:
Y_phosphatase3; pfam13350"
/db_xref="CDD:205530"
misc_feature 291292..291489
/locus_tag="YPTS_0267"
/note="Tyrosine phosphatase family C-terminal region;
Region: Y_phosphatase3C; pfam13348"
/db_xref="CDD:205528"
gene 291859..293670
/locus_tag="YPTS_0268"
/db_xref="GeneID:6260779"
CDS 291859..293670
/locus_tag="YPTS_0268"
/note="PFAM: carbon starvation protein CstA;
KEGG: yps:YPTB0252 putative carbon starvation protein"
/codon_start=1
/transl_table=11
/product="carbon starvation protein CstA"
/protein_id="YP_001870720.1"
/db_xref="GI:186893608"
/db_xref="InterPro:IPR003706"
/db_xref="GeneID:6260779"
/translation="MQHAITFVIASACILTICYRLYGIFFVRKVLRVDDSEVTPSHTF
EDGKDYVPTKKWVNFGSHFAAIAAAGPLVGPVLAAQYGYLPGFLWLLIGCVIGGAVHD
TVVLFASMKHQGKSLSEVAKSELGPVAGWCTGLAMLFIITITMAGLSMVVVHALERNP
WGTFAVFMTIPIAICVGLWERMTGSMKGASYVGIAAIMVCVFVGPYIEGTWLGEWLML
KADTVSIILPMYAFFATALPVWMLLTPRGYLSSFMKIGVFGALIVGVVFINPEIQFPA
VTQFIHGGGPVLAGPVWPFISITIACGAISGFHAFIGSGTTPKQIDKWSDILPVGFGA
MLAECMVGVMALIAATSLHPADYFAINSSAEAWSALGMEVVNLPKLSEEIGLDLYGRT
GGAVTLAVGMTDIFIRVPWFNSLAAYFFQFVVMFEAVFILTAVDSGTRVARYLLQDFL
GDIWAPLKRTDWLPGTLVCSVIACALWGYLLNSGDINSVWALFGVSNQLMASVGLIIG
ATIILRLATKRVYMLTCVIPLAYLFVTVNYAGYWMITHVYFNSAAKGYNLFNGIISII
MMTLGVIILISALRKWRELWIRRSAEMAGNKVVTANA"
misc_feature 291865..293667
/locus_tag="YPTS_0268"
/note="Carbon starvation protein, predicted membrane
protein [Signal transduction mechanisms]; Region: CstA;
COG1966"
/db_xref="CDD:32149"
misc_feature 291865..293013
/locus_tag="YPTS_0268"
/note="Carbon starvation protein CstA; Region: CstA;
pfam02554"
/db_xref="CDD:190343"
misc_feature 293107..293475
/locus_tag="YPTS_0268"
/note="C-terminal domain on CstA (DUF4161); Region:
DUF4161; pfam13722"
/db_xref="CDD:205897"
gene 294190..294720
/locus_tag="YPTS_0269"
/db_xref="GeneID:6260780"
CDS 294190..294720
/locus_tag="YPTS_0269"
/note="KEGG: yps:YPTB0253 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870721.1"
/db_xref="GI:186893609"
/db_xref="GeneID:6260780"
/translation="MTFNDAITTTIDFVRVHEAWAIPIVFILAFGESLAFLSLLLPAT
VILLGLGALIGESGIPFWPIWAAAATGAFFGDWASYWVGIHYKDRVATLWPLSRNPQL
LVRGHAFFERWGFFGAFFGRFFGPLRAIVPLVAGICAMPQRYFQLANIASALIWAFGI
LAPGAFGIQWLSNWIG"
misc_feature 294208..294717
/locus_tag="YPTS_0269"
/note="Uncharacterized membrane-associated protein
[Function unknown]; Region: DedA; COG0586"
/db_xref="CDD:30931"
misc_feature 294310..294687
/locus_tag="YPTS_0269"
/note="SNARE associated Golgi protein; Region:
SNARE_assoc; cl00429"
/db_xref="CDD:207043"
gene 294928..296433
/locus_tag="YPTS_0270"
/db_xref="GeneID:6260781"
CDS 294928..296433
/locus_tag="YPTS_0270"
/note="PFAM: protein of unknown function DUF195;
KEGG: yps:YPTB0254 putative DNA recombination protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870722.1"
/db_xref="GI:186893610"
/db_xref="InterPro:IPR003798"
/db_xref="GeneID:6260781"
/translation="MDISLFYGLGGCLVGGLIGWLIASLSQQRTKAQQDIERRLLEQA
LQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQLAANSEKLQQLAHWRNECEQLNQ
ELRAQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQ
TGRRADEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQ
MAREALNLTKALKGDNKTQGNWGEVVLAKVLEASGLREGHEYQTQVSVKIDQTSRMQP
DVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLSSLRGHIRMLGRKDY
QQLPGLRSLDYVLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLLVALRTITN
LWRYEHQSQNAQRIAERAARLYDKVRLFVDDMASLGQSLDKAQLSYHQAMNKLSQGRG
NLVGQVESFRTLGVEVKRPISPLLAEKACAEHQPEGDLALSDDAESGAFPE"
misc_feature 295156..296400
/locus_tag="YPTS_0270"
/note="Predicted nuclease of restriction endonuclease-like
fold, RmuC family [General function prediction only];
Region: COG1322"
/db_xref="CDD:31513"
misc_feature 295483..296343
/locus_tag="YPTS_0270"
/note="RmuC family; Region: RmuC; pfam02646"
/db_xref="CDD:111535"
gene 296525..297280
/gene="ubiE"
/locus_tag="YPTS_0271"
/db_xref="GeneID:6260782"
CDS 296525..297280
/gene="ubiE"
/locus_tag="YPTS_0271"
/note="Catalyzes the carbon methylation reaction in the
biosynthesis of ubiquinone"
/codon_start=1
/transl_table=11
/product="ubiquinone/menaquinone biosynthesis
methyltransferase"
/protein_id="YP_001870723.1"
/db_xref="GI:186893611"
/db_xref="InterPro:IPR004033"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:6260782"
/translation="MVDQEKETTHFGFRTVAKEQKEGMVAEVFHSVAAKYDLMNDLMS
FGVHRIWKRFTVDCSGVRRGQRVLDLAGGTGDLTAKFSRLVGEQGEVILADINESMLR
MGREKLRDKGIVGNVSYVQANAEALPFPDNYFDCITISFGLRNVTEKEKALRSMFRVL
KPGGRLLVLEFSKPLLEPLSKAYDAYSFHILPKIGELVAQDAESYRYLAESIRMHPDQ
ETLKGMMADAGFENVTYSNLTGGIVALHRGFKF"
misc_feature 296567..297274
/gene="ubiE"
/locus_tag="YPTS_0271"
/note="ubiE/COQ5 methyltransferase family; Region:
Ubie_methyltran; pfam01209"
/db_xref="CDD:110227"
misc_feature 296720..297028
/gene="ubiE"
/locus_tag="YPTS_0271"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(296732..296752,296807..296812,296888..296896,
296939..296941)
/gene="ubiE"
/locus_tag="YPTS_0271"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
misc_feature 296873..>297217
/gene="ubiE"
/locus_tag="YPTS_0271"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene 297294..297944
/locus_tag="YPTS_0272"
/db_xref="GeneID:6260783"
CDS 297294..297944
/locus_tag="YPTS_0272"
/note="PFAM: Sterol-binding domain protein;
KEGG: ypp:YPDSF_3397 hypothetical protein"
/codon_start=1
/transl_table=11
/product="sterol-binding domain-containing protein"
/protein_id="YP_001870724.1"
/db_xref="GI:186893612"
/db_xref="InterPro:IPR003033"
/db_xref="GeneID:6260783"
/translation="MSLRTLMLKPFLLKPRLLTPLITAALETVLNGVLFNDKSLKAAR
SRLVGKVLRIELREINFPLLFVFSERQVDVLSQWDDAADCLVKTDVAVLARLRDRQQL
SPLMRTGELVVEGDIQVVQQLVALLDLAEWDLAEWLAPYVGDVAAESLGQAIHKSSGF
LSRQLRQQQHYLAEAITEEWRMAPNLLEVMWFHEEVDATARATEALSSRLATMETK"
misc_feature 297345..297941
/locus_tag="YPTS_0272"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3165"
/db_xref="CDD:32978"
misc_feature 297381..297644
/locus_tag="YPTS_0272"
/note="SCP-2 sterol transfer family; Region: SCP2;
pfam02036"
/db_xref="CDD:202099"
gene 297944..299575
/gene="ubiB"
/locus_tag="YPTS_0273"
/db_xref="GeneID:6260784"
CDS 297944..299575
/gene="ubiB"
/locus_tag="YPTS_0273"
/note="an Escherichia coli mutant results in accumulation
of octaprenylphenol and no ubiquinone; functions in the
formation of 2-octaprenyl-6-hydroxy-phenol from
2-octaprenylphenol in ubiquinone (coenzyme Q)
biosynthesis; similar to eukaryotic proteins that exhibit
kinase functions"
/codon_start=1
/transl_table=11
/product="putative ubiquinone biosynthesis protein UbiB"
/protein_id="YP_001870725.1"
/db_xref="GI:186893613"
/db_xref="InterPro:IPR004147"
/db_xref="InterPro:IPR010232"
/db_xref="GeneID:6260784"
/translation="MTPGELRRLYLIIRVFLSYGLDELIPNIRLTLPLRVGRHLFFWL
SNRHKDKSLGERLRLALQELGPVWIKFGQMMSTRRDLFPPNIADQLALLQDRVASFDG
ALARKHIEIAMGGALETWFDDFDSQALASASIAQVHTARLKENGKEVVLKVIRPDILP
IIKADVRLMYRLAGWVPKLLPDGRRLRPREVVREYEKTLLDELNLLREAANAIQLRRN
FEDSPMLYIPEVYSDYCRESVLVMERIYGIPVSDIAALEDQGTNMKLLAERGVQVFFT
QVFRDSFFHADMHPGNIFVSYEHPHDPLYIGIDCGIVGSLNKADKRYLAENFIAFFNR
DYRRVAELHVDSGWVPRDTNVEDFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARR
FNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWTTAKPFLESWLRDQVGLPAVIRALK
EKAPFWAEKFPELPELVYDSLQQHKLLQQSVEKLTIQIQGQQQRQGQSRYLFGVGATL
LVSGTILFLADATEVSTGFIVAGALAWFIGWRRTC"
misc_feature 297944..299494
/gene="ubiB"
/locus_tag="YPTS_0273"
/note="Predicted unusual protein kinase [General function
prediction only]; Region: AarF; COG0661"
/db_xref="CDD:31005"
misc_feature 297950..299569
/gene="ubiB"
/locus_tag="YPTS_0273"
/note="putative ubiquinone biosynthesis protein UbiB;
Reviewed; Region: ubiB; PRK04750"
/db_xref="CDD:179874"
gene 299755..300021
/locus_tag="YPTS_0274"
/db_xref="GeneID:6260785"
CDS 299755..300021
/locus_tag="YPTS_0274"
/note="TIGRFAM: twin-arginine translocation protein,
TatA/E family subunit;
PFAM: sec-independent translocation protein mttA/Hcf106;
KEGG: ypi:YpsIP31758_0274 twin arginine-targeting protein
translocase TatA"
/codon_start=1
/transl_table=11
/product="twin arginine-targeting protein translocase"
/protein_id="YP_001870726.1"
/db_xref="GI:186893614"
/db_xref="InterPro:IPR003369"
/db_xref="InterPro:IPR006312"
/db_xref="GeneID:6260785"
/translation="MGSIGWAQLLIIAVIVVLLFGTNKLRTLGSDLGASIKGFKKAMG
DDSQTPPTNVDKTSNDADFAKSITEKQQPVAKAEESKSHEKEQG"
misc_feature 299755..>299967
/locus_tag="YPTS_0274"
/note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788"
/db_xref="CDD:214092"
gene 300025..300687
/locus_tag="YPTS_0275"
/db_xref="GeneID:6260786"
CDS 300025..300687
/locus_tag="YPTS_0275"
/note="TIGRFAM: twin-arginine translocation protein, TatB
subunit;
KEGG: yps:YPTB0259 sec-independent protein translocase
protein TatB"
/codon_start=1
/transl_table=11
/product="twin-arginine translocation protein subunit
TatB"
/protein_id="YP_001870727.1"
/db_xref="GI:186893615"
/db_xref="InterPro:IPR003998"
/db_xref="GeneID:6260786"
/translation="MFDIGFSELLLVLVIGLVVLGPERLPVAVRTVSGWIRTLRSLAA
TVQNELAQELKLQELQDSLKKVEQAGLQNLTPELKASMDELKEAAEALKRSYHVDAGS
EAPHTIHNPLVTEPEAIHDGVTPAEPATQVSALAQAPNILEAGTASVADSVVEAAPVT
TVKSVVQGEVLVKSTPVQEVGLADVMDKPVTKQQIDTIDSHGTDLSSAGPSRIHQPGG
DQ"
misc_feature 300025..300525
/locus_tag="YPTS_0275"
/note="sec-independent translocase; Provisional; Region:
PRK01770"
/db_xref="CDD:179334"
gene 300690..301466
/locus_tag="YPTS_0276"
/db_xref="GeneID:6260787"
CDS 300690..301466
/locus_tag="YPTS_0276"
/note="with TatABE forms the twin-arginine translocation
complex which is involved in the transport of proteins
across the cytoplasmic membrane"
/codon_start=1
/transl_table=11
/product="twin-arginine protein translocation system
subunit TatC"
/protein_id="YP_001870728.1"
/db_xref="GI:186893616"
/db_xref="InterPro:IPR002033"
/db_xref="GeneID:6260787"
/translation="MAVDDTQPLISHLIELRKRLLNCIITILVVFLVLVFFANDIYNL
VSAPLIKQLPAGASMIATDVASPFFTPIKLTMMVSVFVSAPMILYQVWAFIAPALYKH
ERRLMVPLLISSSLLFYLGMAFAYFVVFPLAFGFFAKTAPESVLIATDITKYLDFVMA
LFMAFGISFEVPIAIILLCWAGVTTPEALKKKRPYVFVGAFVVGMLLTPPDVLSQTLL
AIPMYLLFEVGVFFARFYTGKQRRAATEEDEGIDSHPKAP"
misc_feature 300690..301463
/locus_tag="YPTS_0276"
/note="twin-arginine protein translocation system subunit
TatC; Provisional; Region: PRK10921"
/db_xref="CDD:182840"
gene 301522..302304
/locus_tag="YPTS_0277"
/db_xref="GeneID:6260788"
CDS 301522..302304
/locus_tag="YPTS_0277"
/note="magnesium dependent; not involved in the
Sec-independent protein export system"
/codon_start=1
/transl_table=11
/product="DNase TatD"
/protein_id="YP_001870729.1"
/db_xref="GI:186893617"
/db_xref="InterPro:IPR001130"
/db_xref="GeneID:6260788"
/translation="MFDIGVNLTSVQFAKDYHQVVNRAKEAGVLGILITGTDADESLA
AQTLAAEYPGYCWSTTGVHPHHASSWQDSVEQKIRTLAATASVVAIGECGLDFNRNFS
TPAQQEVAFTAQLALAAELSLPVFLHCRDAHERFIDLLVPWLDKIPAAVVHCFTGNSG
ELDACLALGLSIGITGWVCDERRGLDLRALLPRIPVQQLLLETDAPYLLPRDLNPKPA
SRRNEPCFLPHIVQQVAAWRQEDPNWLGQKTDENARRVFRLV"
misc_feature 301522..302295
/locus_tag="YPTS_0277"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:30053"
misc_feature order(301534..301536,301540..301542,301903..301905,
301978..301980,302131..302133)
/locus_tag="YPTS_0277"
/note="active site"
/db_xref="CDD:30053"
gene 302319..303341
/locus_tag="YPTS_0278"
/db_xref="GeneID:6260789"
CDS 302319..303341
/locus_tag="YPTS_0278"
/EC_number="4.2.1.24"
/note="catalyzes the formation of porphobilinogen from
5-aminolevulinate"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_001870730.1"
/db_xref="GI:186893618"
/db_xref="InterPro:IPR001731"
/db_xref="GeneID:6260789"
/translation="MSYAFPGTFPGRRMRRVRCHDFSRRLVAENHLTVNDLIYPVFVM
EGTHQQQAVSSMPGVSRMTIDLLLKEAEAIAKLGVPVISLFPVIEAGKKSLYAEEAYN
PDGLVQRTVRALKDAVPELGILTDVALDPYTTHGQDGVIDSDGYVINDVTKEILVRQA
LSHAEAGAEIIAPSDMMDGRIGAIRDQLERQGLVNTQIMAYSAKYASCYYGPFRDAIG
SSSNLKGGDKKTYQMDPANSDEALQEIAQDLQEGADMVMVKPGMPYLDVVRRVKDTFG
VPTFAYQVSGEYAMHMAAIQNGWLQEKPTVMESLLCFKRAGADGVLTYFAKQVAQWLH
DDQMQR"
misc_feature 302352..303320
/locus_tag="YPTS_0278"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region:
ALAD_PBGS_aspartate_rich; cd04823"
/db_xref="CDD:88599"
misc_feature order(302355..302363,302370..302375,302400..302408,
302478..302480,302487..302489,302763..302768,
302847..302852,302937..302945,303006..303011,
303018..303029,303036..303038,303045..303050,
303102..303116,303186..303188,303231..303233,
303240..303242,303252..303254,303261..303263)
/locus_tag="YPTS_0278"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88599"
misc_feature order(302355..302357,302850..302852,303048..303050,
303060..303062)
/locus_tag="YPTS_0278"
/note="allosteric magnesium binding site [ion binding];
other site"
/db_xref="CDD:88599"
misc_feature order(302694..302696,302700..302702,302706..302708,
302730..302732,302838..302840,302928..302930,
302946..302948,302955..302960,302973..302975,
303000..303002,303012..303014,303093..303095,
303162..303164,303171..303173,303288..303290)
/locus_tag="YPTS_0278"
/note="active site"
/db_xref="CDD:88599"
misc_feature order(302706..302708,302730..302732,302841..302843)
/locus_tag="YPTS_0278"
/note="aspartate-rich active site metal binding site;
other site"
/db_xref="CDD:88599"
misc_feature order(302928..302930,303093..303095)
/locus_tag="YPTS_0278"
/note="Schiff base residues; other site"
/db_xref="CDD:88599"
gene complement(303451..303939)
/gene="rfaH"
/locus_tag="YPTS_0279"
/db_xref="GeneID:6260790"
CDS complement(303451..303939)
/gene="rfaH"
/locus_tag="YPTS_0279"
/note="KEGG: ypi:YpsIP31758_0279 transcriptional activator
RfaH;
TIGRFAM: transcriptional activator RfaH;
PFAM: NGN domain protein;
SMART: KOW domain protein"
/codon_start=1
/transl_table=11
/product="transcriptional activator RfaH"
/protein_id="YP_001870731.1"
/db_xref="GI:186893619"
/db_xref="InterPro:IPR005824"
/db_xref="InterPro:IPR006645"
/db_xref="InterPro:IPR010215"
/db_xref="GeneID:6260790"
/translation="MKSWYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRI
EVIEALFPNYLFAEFDPENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADMQAHAVD
KIIAPEVPKPGDIVKIIDGVFAGLQAIYTEPDGEARSMLLLNMLNSQIKHSLDNRQFE
KQ"
misc_feature complement(303454..303939)
/gene="rfaH"
/locus_tag="YPTS_0279"
/note="transcriptional activator RfaH; Provisional;
Region: rfaH; PRK09014"
/db_xref="CDD:181611"
misc_feature complement(303646..303933)
/gene="rfaH"
/locus_tag="YPTS_0279"
/note="N-Utilization Substance G (NusG) N-terminal domain
in the NusG Specialized Paralog (SP), RfaH; Region:
NGN_SP_RfaH; cd09892"
/db_xref="CDD:193581"
misc_feature complement(303532..303612)
/gene="rfaH"
/locus_tag="YPTS_0279"
/note="KOW (Kyprides, Ouzounis, Woese) motif; Region: KOW;
smart00739"
/db_xref="CDD:128978"
gene 304163..305683
/locus_tag="YPTS_0280"
/db_xref="GeneID:6260791"
CDS 304163..305683
/locus_tag="YPTS_0280"
/note="catalyzes the decarboxylation of
3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol"
/codon_start=1
/transl_table=11
/product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase"
/protein_id="YP_001870732.1"
/db_xref="GI:186893620"
/db_xref="InterPro:IPR002830"
/db_xref="GeneID:6260791"
/translation="MAHPIAAEMISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMT
EIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKRVAMGMGQEDVSALRDVGKLLAF
LKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWP
EDAAPLVSWGLTITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAH
PGERFPVAVALGADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKCLSNDLEVPAS
AEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRQDAIYHSTYTGRPP
DEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMG
VWSFLRQFMYTKFVIVCDDDINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFAS
PVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRARIDALWDELAIFSDKDAKR"
misc_feature 304187..305677
/locus_tag="YPTS_0280"
/note="3-octaprenyl-4-hydroxybenzoate decarboxylase;
Provisional; Region: PRK10922"
/db_xref="CDD:182841"
gene 305738..306439
/gene="fre"
/locus_tag="YPTS_0281"
/db_xref="GeneID:6260792"
CDS 305738..306439
/gene="fre"
/locus_tag="YPTS_0281"
/note="NAD(P)H-flavin reductase; catalyzes the reversible
oxidation/reduction of NAD(P) and flavine mononucleotide;
in Salmonella and E. coli this protein also reduces
aquacob(III)alamin to cob(II)alamin"
/codon_start=1
/transl_table=11
/product="FMN reductase"
/protein_id="YP_001870733.1"
/db_xref="GI:186893621"
/db_xref="InterPro:IPR001221"
/db_xref="InterPro:IPR001433"
/db_xref="InterPro:IPR008333"
/db_xref="GeneID:6260792"
/translation="MTTLSCKVTSVEAITDTVYRVQLVPESSFSFRAGQYLMVVMDER
DKRPFSMASTPFQQDFIELHIGASELNLYAMAVMDRILKEKKLDVDIPHGDAWFREGS
KRPLVLIAGGTGFSYARSILLAALAEQPDREVSIYWGGREAVHLYDLGELEALSIKYP
QLKVIPVVEQPEEGWRGRTGTVLSAVLQDYGSLAEQDIYIAGRFEMAKIARERFCVER
GAQEEHIFGDAFAFI"
misc_feature 305741..306436
/gene="fre"
/locus_tag="YPTS_0281"
/note="FMN reductase; Validated; Region: fre; PRK08051"
/db_xref="CDD:181209"
misc_feature 305753..306427
/gene="fre"
/locus_tag="YPTS_0281"
/note="NAD(P)H dependent flavin oxidoreductases use flavin
as a substrate in mediating electron transfer from iron
complexes or iron proteins. Structurally similar to
ferredoxin reductases, but with only 15% sequence
identity, flavin reductases reduce FAD, FMN; Region:
flavin_oxioreductase; cd06189"
/db_xref="CDD:99786"
misc_feature order(305843..305845,305876..305887,305927..305935,
305939..305941,305951..305959,306074..306076,
306083..306085,306419..306421,306425..306427)
/gene="fre"
/locus_tag="YPTS_0281"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99786"
misc_feature order(305876..305878,305882..305887)
/gene="fre"
/locus_tag="YPTS_0281"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99786"
misc_feature order(305948..305950,305957..305959,305966..305968,
305987..305989,306011..306013,306017..306019)
/gene="fre"
/locus_tag="YPTS_0281"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99786"
misc_feature order(306059..306061,306071..306082,306086..306088)
/gene="fre"
/locus_tag="YPTS_0281"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99786"
misc_feature order(306074..306079,306152..306160,306341..306346)
/gene="fre"
/locus_tag="YPTS_0281"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99786"
gene complement(306599..307762)
/gene="fadA"
/locus_tag="YPTS_0282"
/db_xref="GeneID:6260793"
CDS complement(306599..307762)
/gene="fadA"
/locus_tag="YPTS_0282"
/EC_number="2.3.1.16"
/note="FadA; fatty acid oxidation complex component beta;
functions in a heterotetramer with FadB; similar to
FadI2J2 complex; functions in beta-oxidation of fatty
acids"
/codon_start=1
/transl_table=11
/product="3-ketoacyl-CoA thiolase"
/protein_id="YP_001870734.1"
/db_xref="GI:186893622"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002155"
/db_xref="InterPro:IPR012805"
/db_xref="GeneID:6260793"
/translation="MENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPG
LNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGA
RAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMGRTVAKAAGMMGLTAEMLAKIHNI
SRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRFDFDEVIRPETNLSG
LAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCD
PSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNL
NGGAIALGHPLGCSGARISTTLLNLMERRDVQFGLATMCIGLGQGIATVFERL"
misc_feature complement(306602..307762)
/gene="fadA"
/locus_tag="YPTS_0282"
/note="3-ketoacyl-CoA thiolase; Reviewed; Region: fadA;
PRK08947"
/db_xref="CDD:181592"
misc_feature complement(306605..307750)
/gene="fadA"
/locus_tag="YPTS_0282"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:29411"
misc_feature complement(order(306632..306637,306881..306883,
306941..306943,306947..306949,306953..306955,
307397..307399,307442..307444,307451..307456,
307475..307477,307499..307510,307541..307543,
307553..307555,307562..307564,307607..307609,
307691..307693))
/gene="fadA"
/locus_tag="YPTS_0282"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29411"
misc_feature complement(order(306644..306646,306734..306736,
307490..307492))
/gene="fadA"
/locus_tag="YPTS_0282"
/note="active site"
/db_xref="CDD:29411"
gene complement(307774..309963)
/gene="fadB"
/locus_tag="YPTS_0283"
/db_xref="GeneID:6260794"
CDS complement(307774..309963)
/gene="fadB"
/locus_tag="YPTS_0283"
/note="includes enoyl-CoA hydratase,
delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase,
3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA
epimerase; catalyzes the formation of an hydroxyacyl-CoA
by addition of water on enoyl-CoA; also exhibits
3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA
dehydrogenase activities; forms a heterotetramer with
FadA; similar to FadI2J2 complex; functions in
beta-oxidation of fatty acids"
/codon_start=1
/transl_table=11
/product="multifunctional fatty acid oxidation complex
subunit alpha"
/protein_id="YP_001870735.1"
/db_xref="GI:186893623"
/db_xref="InterPro:IPR001753"
/db_xref="InterPro:IPR006108"
/db_xref="InterPro:IPR006176"
/db_xref="InterPro:IPR006180"
/db_xref="InterPro:IPR012799"
/db_xref="GeneID:6260794"
/translation="MLYQSETLQLHWLENGIAELVFDAPGSVNKLDTKTVANLGEALN
VLEKQSELKGLLLRSAKTALIVGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLP
VPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGA
DSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDGKLDWQAARRPK
LEPLKLNPTEAAMCFTIAKGRVMQVAGKHYPAPLTAVKTIEAAAKFGRTEALNLETNS
FVPLAGSNEARALVGIFLNDQYVKAQAKKLSKGVAAPKLAAVLGAGIMGGGIAYQSAL
KSVPVIMKDINENSLDLGMNEAAKLLNKQLERGKVDGLKMASILATIRPTLDYAGIER
AQVIVEAVVENPKVKAAVLAEVEALIGEDTVLASNTSTIPIDQLAKSLKRPENFCGMH
FFNPVHQMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIVVNDCPGFFVNRVLFPYLA
GFGMLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNK
DYRDAVDVMFDNQRFGQKNGQGFYRYTQDAKGKPRKENDEQVDKLLAEISQPLQEFSD
EDIIARTMIPMINEVVRCLEEGIIASAAEGDMALVYGLGFPPFHGGVFRYLDTLGSAN
YVEMAQRYAHLGALYHVPAGLRAKAEHNESYYPVAAALLDVSTNQPA"
misc_feature complement(307819..309963)
/gene="fadB"
/locus_tag="YPTS_0283"
/note="multifunctional fatty acid oxidation complex
subunit alpha; Reviewed; Region: fadB; PRK11730"
/db_xref="CDD:183293"
misc_feature complement(309355..309924)
/gene="fadB"
/locus_tag="YPTS_0283"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature complement(order(309538..309540,309547..309552,
309616..309624,309628..309630,309754..309768,
309778..309780,309874..309876,309880..309882))
/gene="fadB"
/locus_tag="YPTS_0283"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature complement(order(309616..309618,309760..309762))
/gene="fadB"
/locus_tag="YPTS_0283"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature complement(order(309355..309357,309364..309366,
309409..309411,309418..309420,309451..309453,
309460..309465,309469..309474,309478..309483,
309496..309501,309505..309513,309517..309519,
309535..309546,309580..309591,309652..309654,
309676..309678))
/gene="fadB"
/locus_tag="YPTS_0283"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
misc_feature complement(308482..309018)
/gene="fadB"
/locus_tag="YPTS_0283"
/note="3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain; Region: 3HCDH_N; pfam02737"
/db_xref="CDD:202367"
misc_feature complement(308188..308478)
/gene="fadB"
/locus_tag="YPTS_0283"
/note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain;
Region: 3HCDH; pfam00725"
/db_xref="CDD:201415"
misc_feature complement(<307927..308085)
/gene="fadB"
/locus_tag="YPTS_0283"
/note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain;
Region: 3HCDH; pfam00725"
/db_xref="CDD:201415"
gene 310290..311621
/locus_tag="YPTS_0284"
/db_xref="GeneID:6260795"
CDS 310290..311621
/locus_tag="YPTS_0284"
/note="catalyzes the hydrolysis of dipeptides with a
proline at the C-terminal; also catalyzes the low
efficiency hydrolysis of organophosphate di- and
tri-esters"
/codon_start=1
/transl_table=11
/product="proline dipeptidase"
/protein_id="YP_001870736.1"
/db_xref="GI:186893624"
/db_xref="InterPro:IPR000994"
/db_xref="InterPro:IPR001131"
/db_xref="GeneID:6260795"
/translation="METLASLYNEHLSTLQQRTRDVLERHQLDALLIHSGELQRLFLD
DRDYPFKVNPQFKAWVPVTEVPNCWLWVDGVNTPKLWFYSPVDYWHSVEPLPDSFWTK
NIDVQPLLNADDIAQQLPVQRERVAYIGYAQQRAQALGFSAENINPQPVLDYLHYYRS
YKTDYELACMREAQKTAVVGHRAAYEAFQSGMSEFDINLAYLMATGHRDTDVPYDNIV
ALNEHSAVLHYTILQHQPPAEIRSFLIDAGAEYNGYAADLTRTYAADRDSDFAALISD
LNTEQLALIDTIKSGERYTDYHVQMHQRIAKLLRTHNLVTGISEEAMVEQGITCPFLP
HGLGHPLGLQVHDTAGFMQDDKGTNLNAPSKYPYLRCTRVLQPRMVLTIEPGLYFIDS
LLAPWRIGEFSKHFNWDRIDALKPYGGIRIEDNIVIHDKRVENMTRDLKLA"
misc_feature 310290..311618
/locus_tag="YPTS_0284"
/note="proline dipeptidase; Provisional; Region: PRK13607"
/db_xref="CDD:184178"
misc_feature 310788..311603
/locus_tag="YPTS_0284"
/note="Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase. Catalyses
hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on...; Region:
Prolidase; cd01087"
/db_xref="CDD:29972"
misc_feature order(310971..310973,311025..311027,311058..311060,
311304..311306,311439..311441,311556..311558)
/locus_tag="YPTS_0284"
/note="active site"
/db_xref="CDD:29972"
gene 311621..312232
/locus_tag="YPTS_0285"
/db_xref="GeneID:6260796"
CDS 311621..312232
/locus_tag="YPTS_0285"
/note="PFAM: protein of unknown function UPF0029; Domain
of unknown function DUF1949;
KEGG: ypi:YpsIP31758_0285 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870737.1"
/db_xref="GI:186893625"
/db_xref="InterPro:IPR001498"
/db_xref="InterPro:IPR015269"
/db_xref="InterPro:IPR015796"
/db_xref="GeneID:6260796"
/translation="MQPYLIPAMPVTISEEIKKSRFITLLAHTCGVNEAKDFIQQVKQ
QHPTARHHCWAFVAGPPTDSQQLGFSDDGEPSGTAGKPILAQLMGSDIGEITAVVVRY
YGGIKLGTGGLVKAYGSGVQQALKQVAVKYKVPQVEYTLQCDYAQLAMVEMLLQQVEG
QILRGEYTELVTLHLTLPATQASQVGDKLRDLSRGTLQLTPIS"
misc_feature 311621..312229
/locus_tag="YPTS_0285"
/note="hypothetical protein; Provisional; Region:
PRK11568"
/db_xref="CDD:183205"
misc_feature 311669..311998
/locus_tag="YPTS_0285"
/note="Uncharacterized protein family UPF0029; Region:
UPF0029; pfam01205"
/db_xref="CDD:201661"
misc_feature 312041..312205
/locus_tag="YPTS_0285"
/note="Domain of unknown function (DUF1949); Region:
DUF1949; pfam09186"
/db_xref="CDD:204160"
gene 312272..313723
/locus_tag="YPTS_0286"
/db_xref="GeneID:6260797"
CDS 312272..313723
/locus_tag="YPTS_0286"
/note="TIGRFAM: potassium uptake protein, TrkH family;
PFAM: cation transporter;
KEGG: yps:YPTB0270 potassium transporter"
/codon_start=1
/transl_table=11
/product="potassium transporter"
/protein_id="YP_001870738.1"
/db_xref="GI:186893626"
/db_xref="InterPro:IPR003445"
/db_xref="InterPro:IPR004772"
/db_xref="GeneID:6260797"
/translation="MHFRAITRIVGLLVILFSGTMFIPGLVALIYRDGAGRAFSETFF
VAVSIGLLLWLPNRKQKHELKPREGFLIVVLFWTVLGSVGALPFLFSERPNLSLTDAF
FESFSGLTTTGATTLVGLDSLPKAILFYRQMLQWLGGMGIIVLAVAILPILGVGGMQL
YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTIACALALWGAGMSVFDAISHSFSTI
AIGGFSTHDASIGYFNSPTINTIIGIFLLISGCNFGLHFAVLSGRSLKVYWRDPEFRM
FIFVQLTLVIVCTLVLWQHSVYKSGIETLNQAFFQVVSMATTAGFTTDSIAKWPLFLP
LLLLCSAFIGGCAGSTGGGLKVIRILLLYLQGSRELKRLVHPNAVYTIKLGRRALPER
ILEAVWGFFSAYALVFIISMLAIVATGVDEFSAFAAVTATLNNLGPGLGVVADNFTSM
NPAAKWILVITMLFGRLEVFTLLVLFTPTFWRE"
misc_feature 312272..313720
/locus_tag="YPTS_0286"
/note="potassium transporter; Provisional; Region:
PRK10750"
/db_xref="CDD:182698"
misc_feature 312272..313720
/locus_tag="YPTS_0286"
/note="Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: TrkG;
COG0168"
/db_xref="CDD:30517"
gene 313745..314278
/gene="hemG"
/locus_tag="YPTS_0287"
/db_xref="GeneID:6260798"
CDS 313745..314278
/gene="hemG"
/locus_tag="YPTS_0287"
/EC_number="1.3.3.4"
/note="catalyzes the oxidation of protoporphyrinogen IX to
form protoporphyrin IX"
/codon_start=1
/transl_table=11
/product="protoporphyrinogen oxidase"
/protein_id="YP_001870739.1"
/db_xref="GI:186893627"
/db_xref="InterPro:IPR001226"
/db_xref="InterPro:IPR008254"
/db_xref="GeneID:6260798"
/translation="MKILILYSSRDGQTKTIASYIAKQLTEAATCEIQDLSQVGQIDL
SQYQQVIIGASVRYGHFSPVLNKFVNKHVAQLSQMPSAFFAVNLTARKPEKRSPQTNT
YVRKFLLNTPWQPTLCSVFAGALRYPRYSWIDRIMIQLIMRMTGGETDTSKEVEYTDW
QEVSRFTQDFLALQYKK"
misc_feature 313745..314275
/gene="hemG"
/locus_tag="YPTS_0287"
/note="protoporphyrinogen oxidase; Provisional; Region:
hemG; PRK11104"
/db_xref="CDD:182966"
gene 314760..316294
/locus_tag="YPTS_R0086"
/db_xref="GeneID:6260799"
rRNA 314760..316294
/locus_tag="YPTS_R0086"
/product="16S ribosomal RNA"
/db_xref="GeneID:6260799"
gene 316398..316474
/locus_tag="YPTS_R0008"
/note="tRNA-Ile1"
/db_xref="GeneID:6260800"
tRNA 316398..316474
/locus_tag="YPTS_R0008"
/product="tRNA-Ile"
/db_xref="GeneID:6260800"
gene 316526..316601
/locus_tag="YPTS_R0009"
/note="tRNA-Ala1"
/db_xref="GeneID:6260801"
tRNA 316526..316601
/locus_tag="YPTS_R0009"
/product="tRNA-Ala"
/db_xref="GeneID:6260801"
gene 316820..319726
/locus_tag="YPTS_R0093"
/db_xref="GeneID:6260802"
rRNA 316820..319726
/locus_tag="YPTS_R0093"
/product="23S ribosomal RNA"
/db_xref="GeneID:6260802"
gene 319838..319953
/locus_tag="YPTS_R0099"
/db_xref="GeneID:9679776"
rRNA 319838..319953
/locus_tag="YPTS_R0099"
/product="5S ribosomal RNA"
/db_xref="GeneID:9679776"
gene 320416..321453
/gene="murB"
/locus_tag="YPTS_0290"
/db_xref="GeneID:6260803"
CDS 320416..321453
/gene="murB"
/locus_tag="YPTS_0290"
/EC_number="1.1.1.158"
/note="catalyzes the reduction of UDP-N-acetylglucosamine
enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylenolpyruvoylglucosamine reductase"
/protein_id="YP_001870740.1"
/db_xref="GI:186893628"
/db_xref="InterPro:IPR003170"
/db_xref="InterPro:IPR006094"
/db_xref="InterPro:IPR011601"
/db_xref="GeneID:6260803"
/translation="MSNQRSSLKHLNTFALPAYASNVISAGSVETLIAAWHESKAKRQ
PVLLLGEGSNVLFIKNFSGTVLLNRIMGITSTEDSAAWHLHVGAGENWHQLVCHSLQN
NMPGLENLALIPGCVGSAPIQNIGAYGVELKQVCEYVDLLDMDKGTIQRISAEECQFG
YRDSIFKHRYGNGFAIVSVGIKLMKSWTPTLGYGDLIHMDPLTVTATDIFNSVCTMRR
SKLPDPMVTGNAGSFFKNPVVSAAIAEEIVHCYPNAPHYLQPDGSVKLAAGWLIDQCS
LKGYQIGGAAVHQQQALVLINQSEATGQDVIHLARYIRQQVAQRFSIWLEPEVRFIAD
NGEVNAVEHLS"
misc_feature 320416..321411
/gene="murB"
/locus_tag="YPTS_0290"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional; Region: murB; PRK00046"
/db_xref="CDD:178820"
misc_feature 320473..320874
/gene="murB"
/locus_tag="YPTS_0290"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
misc_feature 321040..321411
/gene="murB"
/locus_tag="YPTS_0290"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase,
C-terminal domain; Region: MurB_C; pfam02873"
/db_xref="CDD:111727"
gene 321450..322409
/locus_tag="YPTS_0291"
/db_xref="GeneID:6260804"
CDS 321450..322409
/locus_tag="YPTS_0291"
/EC_number="6.3.4.15"
/note="catalyzes the formation of biotinyl-5'-AMP, also
acts as a transcriptional repressor of the biotin operon"
/codon_start=1
/transl_table=11
/product="biotin--protein ligase"
/protein_id="YP_001870741.1"
/db_xref="GI:186893629"
/db_xref="InterPro:IPR003142"
/db_xref="InterPro:IPR004143"
/db_xref="InterPro:IPR004408"
/db_xref="InterPro:IPR004409"
/db_xref="InterPro:IPR013196"
/db_xref="GeneID:6260804"
/translation="MKDIRVPLRLVSILSDGFFHSGEQLGETLGMSRAAINKHMQTIR
DWGLDVFTVPGKGYSLPTSIQLLDEQKILSYLPTGHVTVLPVVDSTNQYLLDRITELK
SGDACVAEYQQAGRGRRGRQWVSPFGANLYLSMYWRLEQGPAAAMGLSLVVGIVMAEV
LQNLGAEKVRVKWPNDLYLNDKKLAGILVELTGKTGDAAQLVIGAGINLTMRGSETNA
INQDWINLQDAGVTIDRNKLTAEILSELRLAVVKFENDGLSAFLSRWQKMDNYLNRPV
KLIIGNQEIFGIARGIDQQGALLLEQDGNIKPYIGGEISLRGV"
misc_feature 321450..321686
/locus_tag="YPTS_0291"
/note="Biotin operon repressor [Transcription]; Region:
BirA; COG1654"
/db_xref="CDD:31840"
misc_feature 321453..322403
/locus_tag="YPTS_0291"
/note="bifunctional biotin--[acetyl-CoA-carboxylase]
synthetase/biotin operon repressor; Provisional; Region:
PRK11886"
/db_xref="CDD:183359"
misc_feature 321696..322073
/locus_tag="YPTS_0291"
/note="Biotin/lipoate A/B protein ligase family; Region:
BPL_LplA_LipB; pfam03099"
/db_xref="CDD:202534"
misc_feature 322260..322400
/locus_tag="YPTS_0291"
/note="Biotin protein ligase C terminal domain; Region:
BPL_C; pfam02237"
/db_xref="CDD:111161"
gene complement(322444..323394)
/locus_tag="YPTS_0292"
/db_xref="GeneID:6260805"
CDS complement(322444..323394)
/locus_tag="YPTS_0292"
/EC_number="2.7.1.33"
/note="catalyzes the formation of
(R)-4'-phosphopantothenate in coenzyme A biosynthesis"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="YP_001870742.1"
/db_xref="GI:186893630"
/db_xref="InterPro:IPR004566"
/db_xref="InterPro:IPR006083"
/db_xref="GeneID:6260805"
/translation="MTKREQSLATPYLQFDRTQWAALRDSVPLTLTEEEIVKLKGINE
DLSLDEVAQIYLPLSRLLNFYISSNLRRQAVLEQFLGTDGQRIPYVIGIAGSVAVGKS
TTARLLQALLSRWPEHRSVELITTDGFLHPNKVLNERGLMKKKGFPESYDMHNLVKFV
SEVKSGADYVTAPVYSHLIYDVVPDGNKVIKQPDILILEGLNVLQSGMDYPHDPHHVF
VSDFVDFSIYVDAPEDLLQSWYINRFLKFRQGAFSNPDSYFHNYAKLPETEAIKIATQ
LWNEINGLNLKQNILPTRERASLIMTKSANHAVESVRLRK"
misc_feature complement(322447..323388)
/locus_tag="YPTS_0292"
/note="pantothenate kinase; Provisional; Region: PRK05439"
/db_xref="CDD:180082"
misc_feature complement(322453..323127)
/locus_tag="YPTS_0292"
/note="Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps in
coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point
in...; Region: PanK; cd02025"
/db_xref="CDD:30198"
misc_feature complement(order(322474..322476,322486..322488,
322666..322668,322678..322680,323083..323094,
323101..323103))
/locus_tag="YPTS_0292"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature complement(order(322474..322476,322654..322656,
322666..322668,322864..322866,323077..323079,
323089..323094))
/locus_tag="YPTS_0292"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature complement(order(322798..322800,323089..323091))
/locus_tag="YPTS_0292"
/note="Mg2+-binding site [ion binding]; other site"
/db_xref="CDD:30198"
gene complement(323605..324156)
/locus_tag="YPTS_0293"
/db_xref="GeneID:6260806"
CDS complement(323605..324156)
/locus_tag="YPTS_0293"
/note="PFAM: GCN5-related N-acetyltransferase;
KEGG: yps:YPTB0275 putative acetyltransferase"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_001870743.1"
/db_xref="GI:186893631"
/db_xref="InterPro:IPR000182"
/db_xref="GeneID:6260806"
/translation="MKIVLLNAATFPIYRSGLASLLIDAVTYGASVGYNTHTLSQEEA
EGYFHSLHPAIEREALLLWIARDEIGIIGTIQLVLCQKPNGLNRAEIQKLLVHSRSRR
TGIGHKLIIAAENTAVQLRRGLIYLDTQSGSSAESFYRAQGYRYVGEIPDYACTPNGN
YHPTAIYFKRLFTVVQPHTAIQN"
misc_feature complement(323773..323973)
/locus_tag="YPTS_0293"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(323836..323841,323869..323877))
/locus_tag="YPTS_0293"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 324552..324627
/locus_tag="YPTS_R0010"
/note="tRNA-Thr1"
/db_xref="GeneID:6260807"
tRNA 324552..324627
/locus_tag="YPTS_R0010"
/product="tRNA-Thr"
/db_xref="GeneID:6260807"
gene 324646..324730
/locus_tag="YPTS_R0011"
/note="tRNA-Tyr1"
/db_xref="GeneID:6260808"
tRNA 324646..324730
/locus_tag="YPTS_R0011"
/product="tRNA-Tyr"
/db_xref="GeneID:6260808"
gene 324880..324954
/locus_tag="YPTS_R0012"
/note="tRNA-Gly1"
/db_xref="GeneID:6260809"
tRNA 324880..324954
/locus_tag="YPTS_R0012"
/product="tRNA-Gly"
/db_xref="GeneID:6260809"
gene 324961..325036
/locus_tag="YPTS_R0013"
/note="tRNA-Thr2"
/db_xref="GeneID:6260810"
tRNA 324961..325036
/locus_tag="YPTS_R0013"
/product="tRNA-Thr"
/db_xref="GeneID:6260810"
gene 325145..326329
/locus_tag="YPTS_0296"
/db_xref="GeneID:6260811"
CDS 325145..326329
/locus_tag="YPTS_0296"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_001870744.1"
/db_xref="GI:186893632"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004160"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004541"
/db_xref="InterPro:IPR005225"
/db_xref="GeneID:6260811"
/translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGSA
RAFDQIDNAPEEKARGITINTSHVEYDTPARHYAHVDCPGHADYVKNMITGAAQMDGA
ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ
YDFPGDDTPVIRGSALKALEGDAEWEAKIIELAEALDSYIPQPERAIDRPFLLPIEDV
FSISGRGTVVTGRVERGIVKVGEEVEIVGIIDTIKTTCTGVEMFRKLLDEGRAGENVG
VLLRGTKRDDVQRGQVLAKPGSIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR
TTDVTGTIELPEGVEMVMPGDNVNMVVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKV
IE"
misc_feature 325145..326326
/locus_tag="YPTS_0296"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 325175..325753
/locus_tag="YPTS_0296"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 325199..325222
/locus_tag="YPTS_0296"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(325202..325204,325208..325210,325220..325225,
325232..325234,325241..325246,325256..325258,
325340..325345,325397..325402,325469..325474,
325478..325489,325496..325498,325589..325591,
325601..325603,325679..325684)
/locus_tag="YPTS_0296"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(325208..325225,325283..325285,325550..325555,
325559..325561,325664..325672)
/locus_tag="YPTS_0296"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 325310..325342
/locus_tag="YPTS_0296"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 325328..325330
/locus_tag="YPTS_0296"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 325385..325396
/locus_tag="YPTS_0296"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 325391..325447
/locus_tag="YPTS_0296"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 325550..325561
/locus_tag="YPTS_0296"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 325664..325672
/locus_tag="YPTS_0296"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 325775..326035
/locus_tag="YPTS_0296"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 326042..326311
/locus_tag="YPTS_0296"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(326078..326080,326084..326092,326144..326146,
326264..326272,326300..326302)
/locus_tag="YPTS_0296"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 326580..326963
/gene="secE"
/locus_tag="YPTS_0297"
/db_xref="GeneID:6260812"
CDS 326580..326963
/gene="secE"
/locus_tag="YPTS_0297"
/note="forms a complex with SecY and SecG; SecYEG forms a
putative protein-conducting channel to which secA binds
and translocates targeted polypeptides across the
cytoplasmic membrane, a process driven by ATP and a
proton-motive force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_001870745.1"
/db_xref="GI:186893633"
/db_xref="InterPro:IPR001901"
/db_xref="InterPro:IPR005807"
/db_xref="GeneID:6260812"
/translation="MSANTEAPGSGRGLETAKWLIVAVLLVVAIVGNYYYREYSLPLR
ALAVVVIIAVAGAVALMTAKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
VMSLILWGLDGILVRLVSFITGLRF"
misc_feature 326676..326951
/gene="secE"
/locus_tag="YPTS_0297"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK05740"
/db_xref="CDD:180229"
gene 326965..327510
/gene="nusG"
/locus_tag="YPTS_0298"
/db_xref="GeneID:6260813"
CDS 326965..327510
/gene="nusG"
/locus_tag="YPTS_0298"
/note="Modulates Rho-dependent transcription termination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusG"
/protein_id="YP_001870746.1"
/db_xref="GI:186893634"
/db_xref="InterPro:IPR001062"
/db_xref="InterPro:IPR005824"
/db_xref="InterPro:IPR006645"
/db_xref="InterPro:IPR015869"
/db_xref="GeneID:6260813"
/translation="MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMV
PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
ISDKEVDAIMNRLQQVGDKPRPKTLFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKV
SVSIFGRATPVELDFSQVEKG"
misc_feature 326968..327504
/gene="nusG"
/locus_tag="YPTS_0298"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 326986..327309
/gene="nusG"
/locus_tag="YPTS_0298"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(326995..326997,327097..327099,327157..327159,
327166..327168,327172..327174,327271..327273,
327295..327297)
/gene="nusG"
/locus_tag="YPTS_0298"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 327343..327426
/gene="nusG"
/locus_tag="YPTS_0298"
/note="KOW (Kyprides, Ouzounis, Woese) motif; Region: KOW;
smart00739"
/db_xref="CDD:128978"
gene 327701..328129
/gene="rplK"
/locus_tag="YPTS_0299"
/db_xref="GeneID:6260814"
CDS 327701..328129
/gene="rplK"
/locus_tag="YPTS_0299"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_001870747.1"
/db_xref="GI:186893635"
/db_xref="InterPro:IPR000911"
/db_xref="InterPro:IPR006519"
/db_xref="GeneID:6260814"
/translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
KTESIEKGLPIPVVITVYSDRSFTFVTKTPPAAVLLKKAAGIKSGSGVPNKDKVGKVT
SAQVREIAETKAADMTGSDVDAMMRSIEGTAHSMGLVVEG"
misc_feature 327701..328126
/gene="rplK"
/locus_tag="YPTS_0299"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature 327725..328120
/gene="rplK"
/locus_tag="YPTS_0299"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(327728..327730,327788..327790,327923..327931,
327941..327943,327962..327964,328037..328039,
328052..328060,328070..328072,328079..328084,
328091..328096,328100..328108)
/gene="rplK"
/locus_tag="YPTS_0299"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(327728..327730,327872..327874,327878..327889,
327899..327901,327905..327910,328040..328045,
328052..328057)
/gene="rplK"
/locus_tag="YPTS_0299"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(327776..327778,327788..327790)
/gene="rplK"
/locus_tag="YPTS_0299"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(327980..327982,327989..327991)
/gene="rplK"
/locus_tag="YPTS_0299"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 328133..328837
/gene="rplA"
/locus_tag="YPTS_0300"
/db_xref="GeneID:6260815"
CDS 328133..328837
/gene="rplA"
/locus_tag="YPTS_0300"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_001870748.1"
/db_xref="GI:186893636"
/db_xref="InterPro:IPR002143"
/db_xref="InterPro:IPR005878"
/db_xref="GeneID:6260815"
/translation="MAKLTKRMRVIRDKVDVTKQYDINEAVALLKELATAKFVESVDV
AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFAQGANAEAAKEAGAELVGMDDLAD
QIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
VRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTM
GAGVAIDQSGLTAVVN"
misc_feature 328199..328804
/gene="rplA"
/locus_tag="YPTS_0300"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:88601"
misc_feature order(328238..328246,328253..328255,328259..328261,
328265..328267,328271..328273,328634..328636,
328640..328642,328646..328648,328784..328789,
328793..328795)
/gene="rplA"
/locus_tag="YPTS_0300"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88601"
gene 329202..329699
/gene="rplJ"
/locus_tag="YPTS_0301"
/db_xref="GeneID:6260816"
CDS 329202..329699
/gene="rplJ"
/locus_tag="YPTS_0301"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_001870749.1"
/db_xref="GI:186893637"
/db_xref="InterPro:IPR001790"
/db_xref="InterPro:IPR002363"
/db_xref="GeneID:6260816"
/translation="MALNLQGKQAIVAEVKEVAKGALSAVVADSRGVTVDKMTELRRA
GREAGVHMQVVRNTLLRRIVEGTPFECLKDTFVGPTLIAFSAEHPGAAARLFKAFAKD
NAKFEVKAAAFEGELIPAAQIDRLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRD
QKEAA"
misc_feature 329211..329684
/gene="rplJ"
/locus_tag="YPTS_0301"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:88597"
misc_feature order(329223..329228,329235..329237,329367..329378,
329385..329387)
/gene="rplJ"
/locus_tag="YPTS_0301"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88597"
misc_feature order(329469..329471,329538..329540,329547..329549,
329595..329597,329604..329609,329616..329621,
329625..329633,329637..329645,329649..329657,
329664..329669,329673..329678,329682..329684)
/gene="rplJ"
/locus_tag="YPTS_0301"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:88597"
gene 329766..330134
/gene="rplL"
/locus_tag="YPTS_0302"
/db_xref="GeneID:6260817"
CDS 329766..330134
/gene="rplL"
/locus_tag="YPTS_0302"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_001870750.1"
/db_xref="GI:186893638"
/db_xref="InterPro:IPR000206"
/db_xref="InterPro:IPR013823"
/db_xref="GeneID:6260817"
/translation="MSTITKDQILEGVAALSVMEIVELISAMEEKFGVSAAAVAAGPA
AAVEAAEEQTEFDVVLASFGENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNK
DEAETLKKSLEEAGASVEIK"
misc_feature 329775..330128
/gene="rplL"
/locus_tag="YPTS_0302"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(329775..329777,329814..329822,329829..329834,
329841..329843,329850..329852,329895..329897,
329904..329909,329913..329921,329925..329930,
329991..329993,329997..330002,330006..330008,
330012..330017,330057..330062,330066..330068,
330075..330077)
/gene="rplL"
/locus_tag="YPTS_0302"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(329784..329786,329793..329795,329805..329807,
329844..329846,329859..329861)
/gene="rplL"
/locus_tag="YPTS_0302"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(329826..329828,329835..329840,329850..329852,
329859..329861)
/gene="rplL"
/locus_tag="YPTS_0302"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(329964..329969,329976..329981,329988..329990,
330009..330014,330021..330023)
/gene="rplL"
/locus_tag="YPTS_0302"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(329967..329969,329979..329981,329988..329990,
330009..330014,330021..330023)
/gene="rplL"
/locus_tag="YPTS_0302"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(329967..329969,329976..329981,329988..329990)
/gene="rplL"
/locus_tag="YPTS_0302"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene complement(330280..330417)
/locus_tag="YPTS_0303"
/db_xref="GeneID:6260818"
CDS complement(330280..330417)
/locus_tag="YPTS_0303"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870751.1"
/db_xref="GI:186893639"
/db_xref="GeneID:6260818"
/translation="MQHYYFDREVETLPGILFSITLKPFHRVTLTTELPEWVVAENAV
Y"
gene 330477..334505
/gene="rpoB"
/locus_tag="YPTS_0304"
/db_xref="GeneID:6260819"
CDS 330477..334505
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_001870752.1"
/db_xref="GI:186893640"
/db_xref="InterPro:IPR007120"
/db_xref="InterPro:IPR007121"
/db_xref="InterPro:IPR007641"
/db_xref="InterPro:IPR007642"
/db_xref="InterPro:IPR007644"
/db_xref="InterPro:IPR007645"
/db_xref="InterPro:IPR010243"
/db_xref="GeneID:6260819"
/translation="MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPE
GQHGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRL
VIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD
KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTA
QILDLFFEKVVFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKARRITARHIRQ
LEKDGIDRIEVPVEYIAGKVVAKDYVDASTGELICAANMELSLDLLAKLSQAGHKQIE
TLFTNDLDHGAYISETLRVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSE
DRYDLSAVGRMKFNRSLLRDEIEGSGILSKEDITEVMKKLIDIRNGRGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
PNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVTDEINYLSAIEEGNFVIAQANSNLD
DEGRFLEDLVTCRSKGESSLFSREQVDYMDVSTQQIVSVGASLIPFLEHDDANRALMG
ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKRGGTVQYVDASRIVIKVNEDE
MHPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERGDVLADGPSTDLGELALGQ
NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLTEELQILEAGLF
ARIHAVLVSGGIEAEKLSKLPRERWLELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMD
AKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYD
ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAKLREFIQ
KAYDLGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQLGGL
PTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE"
misc_feature 330477..>333299
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="DNA-directed RNA polymerase subunit beta; Reviewed;
Region: rpoB; PRK00405"
/db_xref="CDD:179007"
misc_feature 330555..>331151
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature <331560..331838
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:203048"
misc_feature <331743..>332609
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature 332625..>333299
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:201307"
misc_feature <333597..334496
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(333639..333641,333645..333647,333720..333728,
333735..333737,333741..333746,334119..334142,
334146..334148)
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(333693..333695,333699..333701,333705..333707,
333771..333773,333777..333779,333786..333788,
333795..333797,333810..333812,333822..333824,
334035..334037,334116..334118,334140..334148,
334152..334154,334191..334193,334200..334208,
334212..334217,334278..334286,334296..334298,
334302..334307,334311..334313,334317..334334,
334338..334355,334365..334367,334434..334436,
334446..334448,334452..334454,334458..334463,
334467..334469,334473..334484,334488..334490,
334494..334496)
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(333717..333719,334122..334124)
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(333720..333722,333759..333761,333840..333845,
333849..333851,334104..334106,334155..334157)
/gene="rpoB"
/locus_tag="YPTS_0304"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 334634..338854
/locus_tag="YPTS_0305"
/db_xref="GeneID:6260820"
CDS 334634..338854
/locus_tag="YPTS_0305"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_001870753.1"
/db_xref="GI:186893641"
/db_xref="InterPro:IPR000722"
/db_xref="InterPro:IPR006592"
/db_xref="InterPro:IPR007066"
/db_xref="InterPro:IPR007080"
/db_xref="InterPro:IPR007081"
/db_xref="InterPro:IPR007083"
/db_xref="InterPro:IPR012754"
/db_xref="GeneID:6260820"
/translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQIL
TEEQYLDALEEFGDEFDAKMGAEAIQALLKNMDLEAECEILREELNETNSETKRKKLT
KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
GLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKVRITEEIRNTEGESITR
TSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKAISKMLNTCYRILGLKPTVIFADQI
MYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETEVAEIQEQFQSGLVTAGERYNKV
IDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFNSIFMMADSGARGSAAQIRQL
AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
RLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVLGRVTAEEVIKPGSADI
LVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYGRDLARGHIINKGEA
VGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKLSNVKFVTNAAGK
LVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANWDPHIMPVVTE
VSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKIVDAKGNDV
LIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPRVADLFE
ARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFEGEVV
ERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQMLR
KGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEA
PVVPQVSADEATANLAELLNAGFGNNKG"
misc_feature 334673..335659
/locus_tag="YPTS_0305"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 334691..337192
/locus_tag="YPTS_0305"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:30435"
misc_feature 335336..336166
/locus_tag="YPTS_0305"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 336098..336565
/locus_tag="YPTS_0305"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 336650..336925
/locus_tag="YPTS_0305"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 336929..>337702
/locus_tag="YPTS_0305"
/note="RNA polymerase Rpb1, domain 5; Region:
RNA_pol_Rpb1_5; pfam04998"
/db_xref="CDD:147266"
misc_feature 337352..>337450
/locus_tag="YPTS_0305"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 337370..337372
/locus_tag="YPTS_0305"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature 338027..>338083
/locus_tag="YPTS_0305"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature <338279..338722
/locus_tag="YPTS_0305"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(338564..338566,338609..338614)
/locus_tag="YPTS_0305"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(338654..338656,338672..338674,338690..338692,
338699..338704,338714..338716)
/locus_tag="YPTS_0305"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(339159..340289)
/gene="thiH"
/locus_tag="YPTS_0306"
/db_xref="GeneID:6260821"
CDS complement(339159..340289)
/gene="thiH"
/locus_tag="YPTS_0306"
/note="in Escherichia coli this enzyme functions in
thiamine biosynthesis along with thiFSGI and iscS; with
ThiFSG catalyzes the formation of thiazole phosphate from
tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate;
forms a complex with ThiG; contains an iron-sulfur center"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiH"
/protein_id="YP_001870754.1"
/db_xref="GI:186893642"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR010722"
/db_xref="InterPro:IPR012726"
/db_xref="GeneID:6260821"
/translation="MSEDFNQRWQQLDWDDISLTINSKKPADVERALNAIKPTREDLM
ALISPAALAYLEPMAQKAQQLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIK
RKTLDEAEIIRECEAIKALGFEHLLLVTGEHQTKVGMDYFRRHLPTIRSRFSSLMMEV
QPLAEDEYTELKALGLDGVMVYQETYHPATYQQHHLRGHKQDFHWRLATPDRLGRAGI
DKIGLGALIGLSNSWRTDCYMLAEHLFYLQQTYWQTRYSISFPRLRPCAGGIEPASIM
SEPQLLQLICAFRLFAPDVELSLSTRESPFFRDNVIPVAINNVSAGSKTQPGGYADDH
PELEQFAPHDNRSPEQVAQALTKAGLQPVWKDWDSHLGRSLR"
misc_feature complement(339168..340280)
/gene="thiH"
/locus_tag="YPTS_0306"
/note="thiamine biosynthesis protein ThiH; Reviewed;
Region: thiH; PRK09240"
/db_xref="CDD:181720"
misc_feature complement(339429..340052)
/gene="thiH"
/locus_tag="YPTS_0306"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(339501..339506,339612..339614,
339744..339746,339807..339815,339894..339899,
339903..339905,340008..340016,340020..340022,
340026..340028,340032..340034))
/gene="thiH"
/locus_tag="YPTS_0306"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(339204..339521)
/gene="thiH"
/locus_tag="YPTS_0306"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; pfam06968"
/db_xref="CDD:148534"
gene complement(340282..341097)
/gene="thiG"
/locus_tag="YPTS_0307"
/db_xref="GeneID:6260822"
CDS complement(340282..341097)
/gene="thiG"
/locus_tag="YPTS_0307"
/note="functions in thiamine (vitamin B1) biosynthesis; in
Bacillus subtilis this enzyme catalyzes the formation of
thiazole from dehydroxyglycine and
1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate"
/codon_start=1
/transl_table=11
/product="thiazole synthase"
/protein_id="YP_001870755.1"
/db_xref="GI:186893643"
/db_xref="InterPro:IPR000771"
/db_xref="InterPro:IPR008867"
/db_xref="GeneID:6260822"
/translation="MLKIADTTFTSRLFTGTGKFSSPELMLEALRASGSQLITMAMKR
VDLQSGNDAILAPLRQLGVRLLPNTSGAKTAEEAIFAARLAREALNTHWVKLEIHPDV
RYLLPDPIETLKAAEVLVKEGFVVLPYCGADPVLCKRLEEVGCAAVMPLGSPIGSNLG
LRTRDFLQIIIEQSKVPVVVDAGIGAPSHALEALELGADAVLVNTAIAVAHSPVQMAH
AFRLAVESGERARLAGLGASPFNPSQPDTLQLRATATSPLTGFLSQLEEQDHV"
misc_feature complement(340324..341094)
/gene="thiG"
/locus_tag="YPTS_0307"
/note="Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous cofactor
that plays an important role in carbohydrate and amino
acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728"
/db_xref="CDD:73390"
misc_feature complement(order(340930..340932,340939..340941,
340975..340977))
/gene="thiG"
/locus_tag="YPTS_0307"
/note="ThiS interaction site; other site"
/db_xref="CDD:73390"
misc_feature complement(order(340555..340557,340807..340809,
340813..340815))
/gene="thiG"
/locus_tag="YPTS_0307"
/note="putative active site [active]"
/db_xref="CDD:73390"
misc_feature complement(order(340327..340329,340333..340341,
340345..340347,340351..340356,340390..340404,
340408..340413,340420..340422,340441..340443,
340450..340455,340462..340470,340483..340485,
340510..340515,340522..340524,340534..340542,
340582..340584,340594..340596,340612..340614,
340621..340629,340681..340686,340693..340701,
340705..340707,340774..340782,340789..340791,
340798..340800))
/gene="thiG"
/locus_tag="YPTS_0307"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:73390"
gene complement(341099..341314)
/locus_tag="YPTS_0308"
/db_xref="GeneID:6260823"
CDS complement(341099..341314)
/locus_tag="YPTS_0308"
/note="with ThiF, ThiG, and ThiO catalyzes the formation
of the thiazole moiety of thiamine pyrophosphate"
/codon_start=1
/transl_table=11
/product="sulfur carrier protein ThiS"
/protein_id="YP_001870756.1"
/db_xref="GI:186893644"
/db_xref="InterPro:IPR003749"
/db_xref="InterPro:IPR010035"
/db_xref="GeneID:6260823"
/translation="MKTNYIPIMLNDQPLEVECNLTAEMLLNQLKHHQPGTALAINQV
IIPRADWQNHRLQAGDHILLFQAIAGG"
misc_feature complement(341102..341293)
/locus_tag="YPTS_0308"
/note="ThiaminS ubiquitin-like sulfur carrier protein;
Region: ThiS; cd00565"
/db_xref="CDD:176353"
misc_feature complement(order(341120..341128,341180..341182))
/locus_tag="YPTS_0308"
/note="thiS-thiF/thiG interaction site; other site"
/db_xref="CDD:176353"
gene complement(341311..342108)
/locus_tag="YPTS_0309"
/db_xref="GeneID:6260824"
CDS complement(341311..342108)
/locus_tag="YPTS_0309"
/note="PFAM: UBA/THIF-type NAD/FAD binding protein;
MoeZ/MoeB domain protein;
KEGG: yps:YPTB0288 thiamine biosynthesis protein ThiF"
/codon_start=1
/transl_table=11
/product="UBA/THIF-type NAD/FAD binding protein"
/protein_id="YP_001870757.1"
/db_xref="GI:186893645"
/db_xref="InterPro:IPR000594"
/db_xref="InterPro:IPR007901"
/db_xref="GeneID:6260824"
/translation="MKNDQTLSDSEFLRYSRQLLLEDIGPEGQRKLKGASVLIVGLGG
LGSPAALYLAAAGVGQLLLADDDQLDLTNLQRQILYRTADIGQTLSNPTSSVSHNKAR
LAQRHLQQLNPQIRIVALDTRLTGQVLTDAVANADLVLDCSDNMETRHQVNAACVTAQ
KPLISGSAVGFSGQLLVIEPPYAQGCYACIYPDKELPQRNCRTAGVLGPVVGVIGTLQ
ALEAIKMLAGIPLALSGKLRLFDGKQQSWSTLQLTRAAHCPACGGGL"
misc_feature complement(341335..342099)
/locus_tag="YPTS_0309"
/note="molybdopterin biosynthesis protein MoeB;
Provisional; Region: PRK05690"
/db_xref="CDD:180204"
misc_feature complement(341353..342069)
/locus_tag="YPTS_0309"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:30111"
misc_feature complement(order(341665..341667,341683..341685,
341809..341811,341881..341883,341908..341910,
341914..341916,341974..341976,341980..341982,
341986..341988))
/locus_tag="YPTS_0309"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:30111"
misc_feature complement(order(341356..341361,341365..341367,
341386..341388,341398..341400,341587..341589,
341593..341595,341605..341610,341662..341664,
341674..341682,341974..341976))
/locus_tag="YPTS_0309"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:30111"
gene complement(342098..342772)
/locus_tag="YPTS_0310"
/db_xref="GeneID:6260825"
CDS complement(342098..342772)
/locus_tag="YPTS_0310"
/EC_number="2.5.1.3"
/note="catalyzes the formation of thiamine monophosphate
from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate
and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate"
/codon_start=1
/transl_table=11
/product="thiamine-phosphate pyrophosphorylase"
/protein_id="YP_001870758.1"
/db_xref="GI:186893646"
/db_xref="InterPro:IPR003733"
/db_xref="GeneID:6260825"
/translation="MSQLDALSPVATPGFPSTEQRLGLYPVVDSLLWIERLLAAGVTT
LQLRIKNADDAQVEQDIVAAIELGKRYQARLFINDYWQLAVKHGAYGVHLGQEDLETA
DLAAIQQAGLRLGISTHDEHELAVAKTLRPSYIALGHIFPTQTKQMPSSPQGLASLSR
QVKNTPDYPTVAIGGISIERVPHVLATGVGSVAVVSAITLASDWQRATAQLLHLIEGK
ELADEK"
misc_feature complement(342137..342703)
/locus_tag="YPTS_0310"
/note="Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution of
the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
Region: TMP_TenI; cd00564"
/db_xref="CDD:73367"
misc_feature complement(order(342185..342196,342248..342250,
342260..342262,342338..342340,342344..342346,
342365..342367,342371..342373,342422..342424,
342494..342496,342629..342631,342635..342637,
342692..342694,342698..342700))
/locus_tag="YPTS_0310"
/note="thiamine phosphate binding site [chemical binding];
other site"
/db_xref="CDD:73367"
misc_feature complement(order(342185..342190,342248..342250,
342335..342340,342344..342346,342422..342424,
342479..342481,342536..342541,342623..342625,
342629..342631,342635..342637))
/locus_tag="YPTS_0310"
/note="active site"
/db_xref="CDD:73367"
misc_feature complement(order(342335..342337,342422..342424,
342479..342481,342488..342490,342536..342541,
342623..342625,342629..342631))
/locus_tag="YPTS_0310"
/note="pyrophosphate binding site [ion binding]; other
site"
/db_xref="CDD:73367"
gene complement(342759..344804)
/locus_tag="YPTS_0311"
/db_xref="GeneID:6260826"
CDS complement(342759..344804)
/locus_tag="YPTS_0311"
/note="required for the synthesis of the
hydromethylpyrimidine moiety of thiamine"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiC"
/protein_id="YP_001870759.1"
/db_xref="GI:186893647"
/db_xref="InterPro:IPR002817"
/db_xref="GeneID:6260826"
/translation="MSNNTTSLPAENSSHPRKGTPIRKKQREEAQQFINTLQGVTFPN
SQRIYLQGSRPDIQVPMREIQLSPTQIGGSKNEPRYEDNEAIPVYDTSGPYGDPQAKL
DVHNGLPKLRAAWVADRQDTEALASVSSGFTQQRLADEGLDHLRFEHLPRPRKAATGQ
CVTQLHYARQGKITPEMEFIALRENMGRERIRGEVLLQQHPGQAFGAHLPENITAEFV
RQEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTR
WGADTVMDLSTGRYIHETREWILRNSPVPIGTVPIYQALEKVNGVAENLTWEMFRDTL
LEQAEQGVDYFTLHAGVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYQHFR
EICQICAAYDVSLSLGDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGP
GHVPMQMIRRNMTEELEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAML
CYVTPKEHLGLPNKEDVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWED
QFNLALDPATARAYHDETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAAAQEQAAA
QAQAATPTTAAQPIDITQPINMLQSGMEKMSAEFRSRGSELYHRPANLSAEANNEPT"
misc_feature complement(342804..344735)
/locus_tag="YPTS_0311"
/note="thiamine biosynthesis protein ThiC; Provisional;
Region: PRK09284"
/db_xref="CDD:181756"
misc_feature complement(344433..344681)
/locus_tag="YPTS_0311"
/note="ThiC-associated domain; Region: ThiC-associated;
pfam13667"
/db_xref="CDD:205844"
misc_feature complement(342966..344318)
/locus_tag="YPTS_0311"
/note="ThiC family; Region: ThiC; pfam01964"
/db_xref="CDD:202065"
gene complement(345179..345688)
/locus_tag="YPTS_0312"
/db_xref="GeneID:6260827"
CDS complement(345179..345688)
/locus_tag="YPTS_0312"
/note="binds specifically to the major sigma factor sigma
70; active in stationary phase"
/codon_start=1
/transl_table=11
/product="anti-RNA polymerase sigma 70 factor"
/protein_id="YP_001870760.1"
/db_xref="GI:186893648"
/db_xref="InterPro:IPR007448"
/db_xref="GeneID:6260827"
/translation="MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKE
KHTPLNAKTLENFCHNLVDYLSSGHFHIYDRIIKEVEGASSPKMALTAKIHPALKNNT
QTIMAFHDRYTNIEIDDDSCTEYQQALSDIGEALDARFKLEDQLIQWAAESWQAAQLA
DADKKSQVN"
misc_feature complement(345218..345688)
/locus_tag="YPTS_0312"
/note="Regulator of sigma D [Transcription]; Region: Rsd;
COG3160"
/db_xref="CDD:32974"
gene 345785..346567
/gene="nudC"
/locus_tag="YPTS_0313"
/db_xref="GeneID:6260828"
CDS 345785..346567
/gene="nudC"
/locus_tag="YPTS_0313"
/EC_number="3.6.1.22"
/note="can catalyze hydrolysis of broad range of
dinucleotide pyrophosphates but prefers reduced form of
NADH; requires divalent metal ions such as magnesium and
manganese and produces two mononucleoside 5'-phosphates"
/codon_start=1
/transl_table=11
/product="NADH pyrophosphatase"
/protein_id="YP_001870761.1"
/db_xref="GI:186893649"
/db_xref="InterPro:IPR000086"
/db_xref="InterPro:IPR015375"
/db_xref="InterPro:IPR015376"
/db_xref="GeneID:6260828"
/translation="MELQLTGKESGWWIVSHENKLWLPKGELPQGNAANWSLQGATAR
QIGEWQGQPVWLIRQMMPSGMGSVRQLLDVDRGLFQLAGRGVQLAEFYRSHRFCGYCG
HEMHASRTEWASLCNHCRERYYPQIAPCVIVAIRRGDEILLAQHVRHRGGINTVLAGF
VEVGETLEQAVSREVLEESNIHIKNLRYVTSQPWPFPHSLMMAFMADYDSGELCHDPK
ELLNAGWYRYDQLPLLPPPGTVARRLIEDTVVLCREHSDLSQ"
misc_feature 345785..346540
/gene="nudC"
/locus_tag="YPTS_0313"
/note="NADH pyrophosphatase; Reviewed; Region: nudC;
PRK00241"
/db_xref="CDD:178944"
misc_feature 345812..346057
/gene="nudC"
/locus_tag="YPTS_0313"
/note="NADH pyrophosphatase-like rudimentary NUDIX domain;
Region: NUDIX-like; pfam09296"
/db_xref="CDD:204191"
misc_feature 346061..346156
/gene="nudC"
/locus_tag="YPTS_0313"
/note="NADH pyrophosphatase zinc ribbon domain; Region:
zf-NADH-PPase; pfam09297"
/db_xref="CDD:204192"
misc_feature 346169..346531
/gene="nudC"
/locus_tag="YPTS_0313"
/note="NADH pyrophosphatase, a member of the Nudix
hydrolase superfamily, catalyzes the cleavage of NADH into
reduced nicotinamide mononucleotide (NMNH) and AMP. Like
other members of the Nudix family, it requires a divalent
cation, such as Mg2+ or Mn2+, for...; Region:
NADH_pyrophosphatase; cd03429"
/db_xref="CDD:72887"
misc_feature order(346172..346174,346256..346264,346364..346366,
346373..346375,346379..346381,346385..346387)
/gene="nudC"
/locus_tag="YPTS_0313"
/note="putative NADH binding site [chemical binding];
other site"
/db_xref="CDD:72887"
misc_feature order(346259..346264,346268..346270,346304..346306,
346313..346318,346364..346366,346373..346375,
346379..346381,346385..346387)
/gene="nudC"
/locus_tag="YPTS_0313"
/note="putative active site [active]"
/db_xref="CDD:72887"
misc_feature 346259..346327
/gene="nudC"
/locus_tag="YPTS_0313"
/note="nudix motif; other site"
/db_xref="CDD:72887"
misc_feature order(346304..346306,346313..346318,346439..346441)
/gene="nudC"
/locus_tag="YPTS_0313"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:72887"
gene 346660..347445
/locus_tag="YPTS_0314"
/db_xref="GeneID:6260829"
CDS 346660..347445
/locus_tag="YPTS_0314"
/note="KEGG: ypi:YpsIP31758_3850 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870762.1"
/db_xref="GI:186893650"
/db_xref="GeneID:6260829"
/translation="MRPIITQTVQPVTSMYPSLPKAFIQDKVMLSLHNKAALDSTIKG
DAVRALLLHAYVDIKGNEVERRTTAVGIQKLYEEVLQELLYQDPKCISVMISHTANPP
TPLSIASPERVMQMMHQNIRQDIASQKTITDRTQTLHNLLSYKNQFQYKAIYDQPRLK
PEENYNFKMVNDVHENLHSIQTDSCCKAGALTGATYFLQDSPGEIHVFGIRITQANEE
SGKVELFQGLKSDVQTNNKLDSLYLLLRGNSHQSPDDISSSVG"
gene 347564..348631
/gene="hemE"
/locus_tag="YPTS_0315"
/db_xref="GeneID:6260830"
CDS 347564..348631
/gene="hemE"
/locus_tag="YPTS_0315"
/EC_number="4.1.1.37"
/note="catalyzes the formation of coproporphyrinogen from
uroporphyrinogen III"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen decarboxylase"
/protein_id="YP_001870763.1"
/db_xref="GI:186893651"
/db_xref="InterPro:IPR000257"
/db_xref="InterPro:IPR006361"
/db_xref="GeneID:6260830"
/translation="MNELKNDRYLRALLRQPVDMTPVWMMRQAGRYLPEYKATRAIAG
DFMSLCKNAELACEVTMQPLRRYPLDAAILFSDILTIPDAMGLGLYFETGEGPRFQSP
ITCRADVEKLPIPDPEQELGYVMNAVRTIRRELAGSVPLIGFSGSPWTLATYMVEGGS
SKAFTKLKKMMYAEPQTLHLLLDKLADSVILYLNAQIKAGAQSVMIFDTWGGVLTGRD
YHEFSLNYMHKIVDGLIRENEGRRVPVTLFTKGGGPWLEAMAATGCDALGLDWTTDIA
DARRRVGDKVALQGNMDPSVLYAPPARIEQEVSTILASFGQGEGHVFNLGHGIHQDVP
PAHAGAFVNAVHALSRPYHQK"
misc_feature 347591..348604
/gene="hemE"
/locus_tag="YPTS_0315"
/note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate side
chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction...; Region: URO-D;
cd00717"
/db_xref="CDD:48141"
misc_feature order(347639..347656,347669..347671,347681..347683,
347699..347701,347780..347800,347834..347836,
347849..347851,347993..347995,348023..348025,
348041..348043,348182..348184,348188..348193,
348305..348307,348542..348544)
/gene="hemE"
/locus_tag="YPTS_0315"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48141"
misc_feature order(347642..347644,347654..347656,347792..347794,
348023..348025,348188..348190,348542..348544)
/gene="hemE"
/locus_tag="YPTS_0315"
/note="active site"
/db_xref="CDD:48141"
gene 348661..349401
/locus_tag="YPTS_0316"
/db_xref="GeneID:6260831"
CDS 348661..349401
/locus_tag="YPTS_0316"
/EC_number="3.1.21.7"
/note="Selectively cleaves double-stranded DNA at the
second phosphodiester bond 3' to a deoxyinosine leaving
behind the intact lesion on the nicked DNA; cleaves DNA
containing urea residues, AP sites, base mismatches,
insertion/deletion mismatches, flaps, and pseudo-Y
structures"
/codon_start=1
/transl_table=11
/product="endonuclease V"
/protein_id="YP_001870764.1"
/db_xref="GI:186893652"
/db_xref="InterPro:IPR007581"
/db_xref="GeneID:6260831"
/translation="MVKTKSRVETKSMFDTKALQAEQRQRASEISLHDGIDNQSVRFI
AGADVGFEQHGEITRAAIAILRYPSLALVEYQVARVATSLPYIPGLLSFREYPALLAA
WAQLQQRPDLILVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFLPLHQDVG
AVQPLFDNDEQLGWVWRSKIRCNPLFISPGHRVSVGSALAWVQRCMAGYRLPEPTRWA
DAIASNRPQFQRWLRKNPDFLGKRRDMI"
misc_feature 348709..349329
/locus_tag="YPTS_0316"
/note="Endonuclease_V, a DNA repair enzyme that initiates
repair of nitrosative deaminated purine bases; Region:
Endonuclease_V; cd06559"
/db_xref="CDD:143472"
misc_feature order(348802..348804,348808..348813,348916..348918,
348922..348933,349006..349014,349024..349026,
349039..349044,349090..349104,349315..349317,
349327..349329)
/locus_tag="YPTS_0316"
/note="Active_site [active]"
/db_xref="CDD:143472"
gene 349447..350037
/locus_tag="YPTS_0317"
/db_xref="GeneID:6260832"
CDS 349447..350037
/locus_tag="YPTS_0317"
/note="PFAM: protein of unknown function DUF416;
KEGG: ypi:YpsIP31758_3847 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870765.1"
/db_xref="GI:186893653"
/db_xref="InterPro:IPR007338"
/db_xref="GeneID:6260832"
/translation="MLRNPIHLRLEKLESWQHLTFMACLCERMYPNYQQFCLETGFGD
PAVYRRILDLIWETLVVKDAKVNFDSQLEKLEEAIPSSDDYAIYGVYPAIDACIALSE
AIHSRLSGETLEHAIAISEASIRTVAMLEMTLAGKEMTDEELKILPAIEEEWDIQWEI
FRLLADCEERDLDLIKGLRSDLREAAVSNIGINLTQ"
misc_feature 349447..350028
/locus_tag="YPTS_0317"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3068"
/db_xref="CDD:32882"
gene 350226..350501
/locus_tag="YPTS_0318"
/db_xref="GeneID:6260833"
CDS 350226..350501
/locus_tag="YPTS_0318"
/note="histone-like DNA-binding protein"
/codon_start=1
/transl_table=11
/product="transcriptional regulator HU subunit alpha"
/protein_id="YP_001870766.1"
/db_xref="GI:186893654"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:6260833"
/translation="MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDPVQL
VGFGTFKVNHRNERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVKS"
misc_feature 350229..350489
/locus_tag="YPTS_0318"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(350229..350234,350241..350243,350250..350252,
350262..350264,350304..350306,350313..350318,
350325..350330,350340..350354,350361..350366,
350379..350381,350445..350450,350460..350462,
350466..350468,350487..350489)
/locus_tag="YPTS_0318"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(350229..350237,350301..350303,350346..350348,
350352..350354,350358..350363,350370..350372,
350382..350384,350388..350393,350397..350399,
350406..350417,350445..350447,350457..350459,
350463..350465,350472..350474)
/locus_tag="YPTS_0318"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 350551..351204
/locus_tag="YPTS_0319"
/db_xref="GeneID:6260834"
CDS 350551..351204
/locus_tag="YPTS_0319"
/note="PFAM: protein of unknown function DUF1481;
KEGG: ypi:YpsIP31758_3845 putative lipoprotein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870767.1"
/db_xref="GI:186893655"
/db_xref="InterPro:IPR010858"
/db_xref="GeneID:6260834"
/translation="MRRVLITFGLTLGLSACSSLSDPPQFSASGYIADSGVVRLWRQD
NAQQQPQVLMSVYSPYFGGNTRVTFYEYQNGILREIRRNDLGATPQSVQLRFDEQGQV
SFMQRQLASRRESLSADDIAVYQLEAKRILELSRVLRAGDVRLIQGRWQDGMLTTCAG
KTLRLNLDDNSQAWLTTRGEKNTQPLGVAWLDSSEGQQLLLVANQDFCRWEPQAGSL"
misc_feature 350551..350607
/locus_tag="YPTS_0319"
/note="Prokaryotic membrane lipoprotein lipid attachment
site; Region: LPAM_1; pfam08139"
/db_xref="CDD:149279"
misc_feature 350632..351189
/locus_tag="YPTS_0319"
/note="Protein of unknown function (DUF1481); Region:
DUF1481; pfam07356"
/db_xref="CDD:148775"
gene complement(351390..352676)
/locus_tag="YPTS_0320"
/db_xref="GeneID:6260835"
CDS complement(351390..352676)
/locus_tag="YPTS_0320"
/EC_number="6.3.4.13"
/note="catalyzes the formation of
N(1)-(5-phospho-D-ribosyl)glycinamide from
5-phospho-D-ribosylamine and glycine in purine
biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylamine--glycine ligase"
/protein_id="YP_001870768.1"
/db_xref="GI:186893656"
/db_xref="InterPro:IPR000115"
/db_xref="InterPro:IPR003806"
/db_xref="InterPro:IPR011761"
/db_xref="GeneID:6260835"
/translation="MNILIIGNGGREHALGWKAAQSPLADKIYVAPGNAGTALEPTLE
NVDIAATDIAGLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLE
GSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMT
LEEAETAVNDMLAGNAFGDAGHRIVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRV
GDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMI
SADGQPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGKLNEKTSDWDERPSLGV
VLAAGGYPADYRQGDVIHGLPQQEVKDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGE
TVAQAQQYAYQLAEGIQWEGVFCRKDIGYRAIARGK"
misc_feature complement(351399..352676)
/locus_tag="YPTS_0320"
/note="phosphoribosylamine--glycine ligase; Provisional;
Region: PRK00885"
/db_xref="CDD:179154"
misc_feature complement(352371..352676)
/locus_tag="YPTS_0320"
/note="Phosphoribosylglycinamide synthetase, N domain;
Region: GARS_N; pfam02844"
/db_xref="CDD:202429"
misc_feature complement(351789..352370)
/locus_tag="YPTS_0320"
/note="Phosphoribosylglycinamide synthetase, ATP-grasp (A)
domain; Region: GARS_A; pfam01071"
/db_xref="CDD:201585"
misc_feature complement(351405..351689)
/locus_tag="YPTS_0320"
/note="Phosphoribosylglycinamide synthetase, C domain;
Region: GARS_C; pfam02843"
/db_xref="CDD:202428"
gene complement(352736..354325)
/gene="purH"
/locus_tag="YPTS_0321"
/db_xref="GeneID:6260836"
CDS complement(352736..354325)
/gene="purH"
/locus_tag="YPTS_0321"
/EC_number="2.1.2.3"
/note="involved in de novo purine biosynthesis"
/codon_start=1
/transl_table=11
/product="bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase"
/protein_id="YP_001870769.1"
/db_xref="GI:186893657"
/db_xref="InterPro:IPR002695"
/db_xref="InterPro:IPR011607"
/db_xref="InterPro:IPR013982"
/db_xref="GeneID:6260836"
/translation="MQQRRPIRRALLSVSDKAGIIEFAQALSQRGIELLSTGGTARLL
ADAGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDGIMAQHGIQPIDIVV
VNLYPFAQTVARPDCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYPAIITEL
DNNDGSLTYPTRFNLAIKAFEHTAAYDSMIANYFGTLVPPYHGDTEQPSGHFPRTLNL
NYIKKQDMRYGENSHQQAAFYIEEDVKEASVATAQQLQGKALSYNNIADTDAALECVK
EFSEPACVIVKHANPCGVAIGDSILAAYERAYQTDPTSAFGGIIAFNRELDAATANAI
ISRQFVEVIIAPTVSSDALALLAAKQNVRVLTCGQWQARSAGLDFKRVNGGLLVQERD
LGMVTAADLRVVSKRQPTEQELRDALFCWKVAKFVKSNAIVYARDNMTIGIGAGQMSR
VYSAKIAGIKAADEGLEVAGSAMASDAFFPFRDGIDAAAAVGITCVIQPGGSIRDDEV
IAAADEHGIAMIFTDMRHFRH"
misc_feature complement(352739..354316)
/gene="purH"
/locus_tag="YPTS_0321"
/note="bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional; Region:
purH; PRK00881"
/db_xref="CDD:179152"
misc_feature complement(353744..354304)
/gene="purH"
/locus_tag="YPTS_0321"
/note="Inosine monophosphate cyclohydrolase domain. This
is the N-terminal domain in the purine biosynthesis
pathway protein ATIC (purH). The bifunctional ATIC protein
contains a C-terminal ATIC formylase domain that
formylates...; Region: IMPCH; cd01421"
/db_xref="CDD:29633"
misc_feature complement(order(353945..353947,354014..354016,
354116..354121,354206..354208,354215..354217,
354275..354277,354281..354283))
/gene="purH"
/locus_tag="YPTS_0321"
/note="purine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:29633"
misc_feature complement(order(353744..353746,353753..353758,
353762..353770,353792..353800,353807..353809,
353909..353911,353918..353923,353933..353935,
353942..353950,354086..354088,354095..354100,
354107..354115,354122..354127,354134..354139,
354146..354148))
/gene="purH"
/locus_tag="YPTS_0321"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29633"
misc_feature complement(order(353945..353947,354119..354121))
/gene="purH"
/locus_tag="YPTS_0321"
/note="putative catalytic residues [active]"
/db_xref="CDD:29633"
misc_feature complement(352943..353917)
/gene="purH"
/locus_tag="YPTS_0321"
/note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
smart00798"
/db_xref="CDD:197879"
misc_feature complement(352739..>353044)
/gene="purH"
/locus_tag="YPTS_0321"
/note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
cl03362"
/db_xref="CDD:198815"
gene 354760..354879
/locus_tag="YPTS_0322"
/db_xref="GeneID:6260837"
CDS 354760..354879
/locus_tag="YPTS_0322"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870770.1"
/db_xref="GI:186893658"
/db_xref="GeneID:6260837"
/translation="MRTSRYQPSVANALLFNNLSDNLCGHSQDDIDACFGRQK"
gene 355015..356549
/locus_tag="YPTS_R0085"
/db_xref="GeneID:6260838"
rRNA 355015..356549
/locus_tag="YPTS_R0085"
/product="16S ribosomal RNA"
/db_xref="GeneID:6260838"
gene 356687..356762
/locus_tag="YPTS_R0014"
/note="tRNA-Glu2"
/db_xref="GeneID:6260839"
tRNA 356687..356762
/locus_tag="YPTS_R0014"
/product="tRNA-Glu"
/db_xref="GeneID:6260839"
gene 357015..359921
/locus_tag="YPTS_R0091"
/db_xref="GeneID:6260840"
rRNA 357015..359921
/locus_tag="YPTS_R0091"
/product="23S ribosomal RNA"
/db_xref="GeneID:6260840"
gene 360032..360147
/locus_tag="YPTS_R0100"
/db_xref="GeneID:9679780"
rRNA 360032..360147
/locus_tag="YPTS_R0100"
/product="5S ribosomal RNA"
/db_xref="GeneID:9679780"
gene 360547..360813
/locus_tag="YPTS_0325"
/db_xref="GeneID:6260841"
CDS 360547..360813
/locus_tag="YPTS_0325"
/note="PFAM: transposase IS3/IS911 family protein;
KEGG: yps:pYV0018 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase IS3/IS911 family protein"
/protein_id="YP_001870771.1"
/db_xref="GI:186893659"
/db_xref="InterPro:IPR002514"
/db_xref="GeneID:6260841"
/translation="MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKK
FGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKF"
misc_feature 360550..360669
/locus_tag="YPTS_0325"
/note="Helix-turn-helix domain of Hin and related
proteins, a family of DNA-binding domains unique to
bacteria and represented by the Hin protein of Salmonella.
The basic HTH domain is a simple fold comprised of three
core helices that form a right-handed...; Region:
HTH_Hin_like; cd00569"
/db_xref="CDD:119388"
misc_feature order(360550..360558,360652..360657,360661..360669)
/locus_tag="YPTS_0325"
/note="DNA-binding interface [nucleotide binding]; DNA
binding site"
/db_xref="CDD:119388"
gene 360891..361646
/locus_tag="YPTS_0326"
/db_xref="GeneID:6260842"
CDS 360891..361646
/locus_tag="YPTS_0326"
/note="PFAM: Integrase catalytic region;
KEGG: yps:YPTB0302 putative transposase"
/codon_start=1
/transl_table=11
/product="Integrase catalytic subunit"
/protein_id="YP_001870772.1"
/db_xref="GI:186893660"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:6260842"
/translation="MMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRR
EGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLF
NGRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEF
ISKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIE
QWRQEYNHFRPYSSLNNLTPAEFARSHQKGPDL"
misc_feature 360927..361619
/locus_tag="YPTS_0326"
/note="insertion element IS2 transposase InsD;
Provisional; Region: PRK14702"
/db_xref="CDD:173165"
misc_feature 360930..361103
/locus_tag="YPTS_0326"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature 361164..361493
/locus_tag="YPTS_0326"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 361404..361604
/locus_tag="YPTS_0326"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(362039..362818)
/locus_tag="YPTS_0327"
/db_xref="GeneID:6260843"
CDS complement(362039..362818)
/locus_tag="YPTS_0327"
/note="PFAM: IstB domain protein ATP-binding protein;
SMART: AAA ATPase;
KEGG: yps:YPTB3876 transposase/IS protein"
/codon_start=1
/transl_table=11
/product="transposase/IS protein"
/protein_id="YP_001870773.1"
/db_xref="GI:186893661"
/db_xref="InterPro:IPR001270"
/db_xref="InterPro:IPR002611"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6260843"
/translation="MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLE
HLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERN
ENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQR
GVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDA
ALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
misc_feature complement(362042..362818)
/locus_tag="YPTS_0327"
/note="transposase/IS protein; Provisional; Region:
PRK09183"
/db_xref="CDD:181681"
misc_feature complement(<362258..362560)
/locus_tag="YPTS_0327"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(362471..362494)
/locus_tag="YPTS_0327"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(362306..362308,362468..362491))
/locus_tag="YPTS_0327"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(362303..362320)
/locus_tag="YPTS_0327"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene complement(362818..363840)
/locus_tag="YPTS_0328"
/db_xref="GeneID:6260844"
CDS complement(362818..363840)
/locus_tag="YPTS_0328"
/note="PFAM: Integrase catalytic region; Resolvase
helix-turn-helix domain protein;
KEGG: yps:YPTB3875 putative transposase"
/codon_start=1
/transl_table=11
/product="Integrase catalytic subunit"
/protein_id="YP_001870774.1"
/db_xref="GI:186893662"
/db_xref="InterPro:IPR001584"
/db_xref="InterPro:IPR006120"
/db_xref="GeneID:6260844"
/translation="MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEP
PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNALRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
PRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVA
NQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDS
FCRGVA"
misc_feature complement(362968..363840)
/locus_tag="YPTS_0328"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:34222"
misc_feature complement(363727..363834)
/locus_tag="YPTS_0328"
/note="Helix-turn-helix domain of Hin and related
proteins, a family of DNA-binding domains unique to
bacteria and represented by the Hin protein of Salmonella.
The basic HTH domain is a simple fold comprised of three
core helices that form a right-handed...; Region:
HTH_Hin_like; cd00569"
/db_xref="CDD:119388"
misc_feature complement(order(363730..363738,363742..363747))
/locus_tag="YPTS_0328"
/note="DNA-binding interface [nucleotide binding]; DNA
binding site"
/db_xref="CDD:119388"
misc_feature complement(363115..363483)
/locus_tag="YPTS_0328"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
gene 364000..365157
/locus_tag="YPTS_0329"
/db_xref="GeneID:6260845"
CDS 364000..365157
/locus_tag="YPTS_0329"
/note="KEGG: yps:YPTB0305 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870775.1"
/db_xref="GI:186893663"
/db_xref="GeneID:6260845"
/translation="MNGAAFVSSMILAVIFTTTTVQASPVAYQKEAITENNLPVFYPQ
LKQQMNYQSSWLAGKYTDFALWRSDTRKILRQALLTPNSTITFSAEKIEQQDRGSYIA
EKIALNITDESRVLGLLLTPKTKGPHPAIVLLHDHGSKFDIGKEKMIRPWGDSAKLAS
AQAWSDKFFSGKFVGDELAKRGYVVFSIDSIGWGDRGPMSYERQQALASNFFNLGRSL
AGTMAYEDMRTVDFMTTLPSVDRKRIGVLGFSMGAYRAWQLAALSDQVAATAAISWFG
NYKGLMTPDNNVLRGQSSFYMLHPGIANKLDFPDIASLAAPRPMLLFNGGKDKLFPAQ
AVEQAYDKVHAIWRSQNAEPRLVTRSWPTLGHVFYQEQQDVVFLWLDRWLK"
misc_feature 364183..365019
/locus_tag="YPTS_0329"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
misc_feature 364519..365130
/locus_tag="YPTS_0329"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene complement(365231..366886)
/gene="actP"
/locus_tag="YPTS_0330"
/db_xref="GeneID:6260846"
CDS complement(365231..366886)
/gene="actP"
/locus_tag="YPTS_0330"
/note="member of the sodium:solute symporter family;
cotranscribed with the acs gene which encodes acetyl
coenzyme A synthase; mutations affect acetate uptake"
/codon_start=1
/transl_table=11
/product="acetate permease"
/protein_id="YP_001870776.1"
/db_xref="GI:186893664"
/db_xref="InterPro:IPR001734"
/db_xref="InterPro:IPR014083"
/db_xref="GeneID:6260846"
/translation="MKIRHWSALSLFVLPALAQAEALTGEVHRQPLNIQAIVMFLLFV
GGTLYITYWASKRTRSRQDYYTAGGRITGFQNGLAIAGDYMSAASFLGISALVYASGY
DGLIYSIGFLIGWPIILFLIAERLRNLGRYTFADVASYRLQQRPIRTLSACGSLVVVA
LYLIAQMVGAGKLIQLLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVMLLS
GATFMAIMVMKSVNFNFNTLFSEAVKVHPKGLSIMSPGGLVSDPISALSLGLALMFGT
AGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVGPNQTFKDAA
GALLGGNNMAAVHLANAVGGSFFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASV
IKKGKANERDELRVSKITVIILGIVAIGLGILFEKQNIAFMVGLAFSIAASCNFPIII
ISMYWDKLTTRGAMIGGWLGLSTAVILMILGPTIWVTILGHEKPIYPYEYPALFSMIA
AFVGTWFFSITDNSETGKQERLLFKSQFVRSQTGLGASKGGAH"
misc_feature complement(365258..366802)
/gene="actP"
/locus_tag="YPTS_0330"
/note="Predicted symporter [General function prediction
only]; Region: DhlC; COG4147"
/db_xref="CDD:33899"
misc_feature complement(365336..366778)
/gene="actP"
/locus_tag="YPTS_0330"
/note="Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain; Region:
SLC5sbd_u4; cd11480"
/db_xref="CDD:212050"
misc_feature complement(order(365771..365776,365783..365785,
366632..366634,366641..366643))
/gene="actP"
/locus_tag="YPTS_0330"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212050"
gene complement(366883..367194)
/locus_tag="YPTS_0331"
/db_xref="GeneID:6260847"
CDS complement(366883..367194)
/locus_tag="YPTS_0331"
/note="PFAM: protein of unknown function DUF485;
KEGG: ypi:YpsIP31758_3836 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870777.1"
/db_xref="GI:186893665"
/db_xref="InterPro:IPR007436"
/db_xref="GeneID:6260847"
/translation="MNDSIYQEIEDNPRFQELVKKRSRFAWLLSLITLTMYVAFIFLI
AFEPQWLGTPIYTGSSVTRGIPVGVGLIVTSFILTGIYVIRANGEFDRLTAEIIREVK
Q"
misc_feature complement(366886..367194)
/locus_tag="YPTS_0331"
/note="Predicted membrane protein [Function unknown];
Region: COG3162"
/db_xref="CDD:32976"
gene complement(367251..369209)
/locus_tag="YPTS_0332"
/db_xref="GeneID:6260848"
CDS complement(367251..369209)
/locus_tag="YPTS_0332"
/note="Acs; catalyzes the conversion of acetate and CoA to
acetyl-CoA"
/codon_start=1
/transl_table=11
/product="acetyl-CoA synthetase"
/protein_id="YP_001870778.1"
/db_xref="GI:186893666"
/db_xref="InterPro:IPR000873"
/db_xref="InterPro:IPR011904"
/db_xref="GeneID:6260848"
/translation="MSQIHKHPIPAAIAEHALITPEKYQHYYQQSVQNPDEFWGEQGK
IIDWIKPYKTVKNTSFDPGHVSIRWFEDGTLNLAANCLDRHLAERGDQTAIIWEGDDP
NQSKTVTYKQLHHDVCQFANVLKSLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS
VIFGGFSPDAVAGRIIDSHSKLVITADEGIRAGRAIPLKKNVDEALKNPAITSIKNVV
VFQRTGNASYWEDGRDVWWHDLIKEASADCPPEEMNAEDPLFILYTSGSTGKPKGVVH
TTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAITLMFEGVP
NYPGVNRLSQVVDKHKVNILYTAPTAIRALMAEGDKAIEGTKRDSLRIMGSVGEPINP
EAWEWYYNKIGNSKCPIVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPALVD
NLGNPQEGVAEGNLVITDSWPGQARTLFGDHDRFEQTYFSTFKGMYFSGDGARRDEDG
YYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGVPHNIKGQAIYAYITLN
HGEEPTPELYTEVRNWVRKEIGPLATPDILHWTDSLPKTRSGKIMRRILRKIATGDTS
NLGDTSTLADPSVVEKLLEEKQSMQTPS"
misc_feature complement(367263..369194)
/locus_tag="YPTS_0332"
/note="acetyl-CoA synthetase; Provisional; Region:
PRK00174"
/db_xref="CDD:178915"
misc_feature complement(368907..369158)
/locus_tag="YPTS_0332"
/note="Domain of unknown function (DUF3448); Region:
DUF3448; pfam11930"
/db_xref="CDD:204782"
misc_feature complement(367569..368885)
/locus_tag="YPTS_0332"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(367308..367439)
/locus_tag="YPTS_0332"
/note="Domain of unknown function (DUF4009); Region:
DUF4009; pfam13193"
/db_xref="CDD:205374"
gene 370064..371380
/gene="gltP"
/locus_tag="YPTS_0333"
/db_xref="GeneID:6260849"
CDS 370064..371380
/gene="gltP"
/locus_tag="YPTS_0333"
/note="carrier protein part of the Na(+)-independent,
binding-protein-independent glutamate-aspartate transport
system"
/codon_start=1
/transl_table=11
/product="glutamate/aspartate:proton symporter"
/protein_id="YP_001870779.1"
/db_xref="GI:186893667"
/db_xref="InterPro:IPR001991"
/db_xref="GeneID:6260849"
/translation="MKSIKISLAWQILIALVLGILVGAVLHNQIESREWLVSNILSPA
GDIFIRLIKMIVVPIVISTLIVGIAGVGDVKKLGRIGLKTIIYFEVITTIAIIIGITL
ANVFQPGVGIDMSALTVVDISQYEKTTEQVQSGSHSLVSTILSLIPANVFASMAKGDM
LPIIFFSVLFGLGLSSLPKETKEPLLNVFKAVSESMFKVTHMIMRYAPIGVFGLISVT
VANFGFASLIPLAKLVILVYAAILFFALVILGTVARLCKLRIWILIRILKDELILAYS
TASSETVLPRIIEKMEAYGAPKAITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIE
LSIGQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA
RTALNVVGNALAVLVIAKWENQFDDKKAKAYEKALFAAEQTPANQS"
misc_feature 370064..371374
/gene="gltP"
/locus_tag="YPTS_0333"
/note="glutamate/aspartate:proton symporter; Provisional;
Region: gltP; PRK11283"
/db_xref="CDD:183075"
misc_feature 370160..371323
/gene="gltP"
/locus_tag="YPTS_0333"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
gene complement(371558..372190)
/locus_tag="YPTS_0334"
/db_xref="GeneID:6260850"
CDS complement(371558..372190)
/locus_tag="YPTS_0334"
/note="PFAM: regulatory protein LuxR; response regulator
receiver;
KEGG: yps:YPTB0310 putative two-component response
regulator"
/codon_start=1
/transl_table=11
/product="two component LuxR family transcriptional
regulator"
/protein_id="YP_001870780.1"
/db_xref="GI:186893668"
/db_xref="InterPro:IPR000792"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:6260850"
/translation="MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLC
RQTEPDMVILDLGLPGMDGLDVIIQLLRRWPAMKILTLTARNEEHYASRTFNSGALGY
VLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGPANTPTVLTPRERQILKLI
TEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGLNV"
misc_feature complement(371561..372190)
/locus_tag="YPTS_0334"
/note="two component system sensor kinase SsrB;
Provisional; Region: PRK15369"
/db_xref="CDD:185267"
misc_feature complement(371831..372175)
/locus_tag="YPTS_0334"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(371873..371878,371885..371887,
371942..371944,372002..372004,372026..372028,
372161..372166))
/locus_tag="YPTS_0334"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(372026..372028)
/locus_tag="YPTS_0334"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(372002..372010,372014..372019))
/locus_tag="YPTS_0334"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(371870..371878)
/locus_tag="YPTS_0334"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(371585..371746)
/locus_tag="YPTS_0334"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature complement(order(371603..371605,371636..371650,
371654..371659,371663..371668,371690..371698,
371735..371743))
/locus_tag="YPTS_0334"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(order(371588..371590,371597..371605,
371696..371698,371702..371704,371708..371710))
/locus_tag="YPTS_0334"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene complement(372203..375022)
/locus_tag="YPTS_0335"
/db_xref="GeneID:6260851"
CDS complement(372203..375022)
/locus_tag="YPTS_0335"
/EC_number="2.7.13.3"
/note="PFAM: response regulator receiver; ATP-binding
region ATPase domain protein; histidine kinase HAMP region
domain protein; histidine kinase A domain protein; Hpt
domain protein;
KEGG: yps:YPTB0311 two-component sensor/regulator"
/codon_start=1
/transl_table=11
/product="multi-sensor hybrid histidine kinase"
/protein_id="YP_001870781.1"
/db_xref="GI:186893669"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR008207"
/db_xref="GeneID:6260851"
/translation="MGKASSLVTRLTLLLGVTLTVIWLILIATTAFFSYENTRQILIN
ELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIKHYDSCYIPFNLD
SCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLL
LLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRD
INLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGW
QQLVIYPRIGFAWEALKPALYQLPFALVILLLLTSVLSLLLRYYLAIPLWNFINIIGA
TGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAKAKRAAE
QANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII
NNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELE
LDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQ
PFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH
GELFAPQRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQYLQGAETE
VLKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDL
VLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSK
PVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQA
KDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQDIIQLDEII
HVLLQPPTTCESTFIISQGQSLMVK"
misc_feature complement(372251..374932)
/locus_tag="YPTS_0335"
/note="two component system sensor kinase SsrA;
Provisional; Region: PRK15347"
/db_xref="CDD:185245"
misc_feature complement(373649..373819)
/locus_tag="YPTS_0335"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(373664..373666,373676..373678,
373685..373687,373697..373699,373706..373708,
373718..373720,373766..373768,373775..373777,
373787..373789,373796..373798,373808..373810))
/locus_tag="YPTS_0335"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(373802..373804)
/locus_tag="YPTS_0335"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(373187..373483)
/locus_tag="YPTS_0335"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(373199..373201,373205..373210,
373223..373225,373229..373231,373277..373288,
373355..373360,373364..373366,373370..373372,
373376..373378,373442..373444,373451..373453,
373463..373465))
/locus_tag="YPTS_0335"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(373451..373453)
/locus_tag="YPTS_0335"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(373280..373282,373286..373288,
373358..373360,373364..373366))
/locus_tag="YPTS_0335"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(372596..372934)
/locus_tag="YPTS_0335"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(372626..372631,372638..372640,
372695..372697,372767..372769,372791..372793,
372920..372925))
/locus_tag="YPTS_0335"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(372791..372793)
/locus_tag="YPTS_0335"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(372767..372775,372779..372784))
/locus_tag="YPTS_0335"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(372623..372631)
/locus_tag="YPTS_0335"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(372266..372484)
/locus_tag="YPTS_0335"
/note="Hpt domain; Region: Hpt; pfam01627"
/db_xref="CDD:201893"
misc_feature complement(order(372344..372346,372353..372355,
372398..372403,372410..372412))
/locus_tag="YPTS_0335"
/note="putative binding surface; other site"
/db_xref="CDD:28972"
misc_feature complement(372410..372412)
/locus_tag="YPTS_0335"
/note="active site"
/db_xref="CDD:28972"
gene 375249..376766
/locus_tag="YPTS_0336"
/db_xref="GeneID:6260852"
CDS 375249..376766
/locus_tag="YPTS_0336"
/note="TIGRFAM: type III secretion outer membrane pore,
YscC/HrcC family;
PFAM: type II and III secretion system protein; NolW
domain protein;
KEGG: ypi:YpsIP31758_3830 type III secretion outer
membrane pore, YscC/HrcC family"
/codon_start=1
/transl_table=11
/product="YscC/HrcC family type III secretion outer
membrane protein"
/protein_id="YP_001870782.1"
/db_xref="GI:186893670"
/db_xref="InterPro:IPR001775"
/db_xref="InterPro:IPR003522"
/db_xref="InterPro:IPR004845"
/db_xref="InterPro:IPR004846"
/db_xref="InterPro:IPR005644"
/db_xref="GeneID:6260852"
/translation="MSLIYIMRKITGLILLFFATLLPYGKFSYGKAIPWQGEPFFIYS
RGMTVSELLKDLGMNYGIPVVISSEINEHFTGKIRDKTPEKILSELAGRYNITWYYDG
ETLYFYPVQSIKREFISPDGLAANTLVKYLQRGDVLAGKNCAIKAIPHLDTLEVKGVP
ICIERVKSVSKMLSEQVRHQNQNKETVKVFPLKYASAADSDYQYRDQNVRLPGLVSVL
RELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQANMPIYRSLITQLDQR
PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFAKNNAEGFSTVIGDTG
NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTSGS
LLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL
LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLIKAVPVNAGE"
misc_feature 375276..376763
/locus_tag="YPTS_0336"
/note="outer membrane secretin SsaC; Provisional; Region:
PRK15346"
/db_xref="CDD:185244"
misc_feature <375405..>375593
/locus_tag="YPTS_0336"
/note="Prophage endopeptidase tail; Region: Prophage_tail;
cl12123"
/db_xref="CDD:200816"
misc_feature 375807..376079
/locus_tag="YPTS_0336"
/note="Bacterial type II/III secretion system short
domain; Region: Secretin_N; pfam03958"
/db_xref="CDD:202830"
misc_feature 376272..376754
/locus_tag="YPTS_0336"
/note="Bacterial type II and III secretion system protein;
Region: Secretin; pfam00263"
/db_xref="CDD:201120"
gene 376768..377979
/locus_tag="YPTS_0337"
/db_xref="GeneID:6260853"
CDS 376768..377979
/locus_tag="YPTS_0337"
/note="TIGRFAM: type III secretion apparatus protein,
YscD/HrpQ family;
KEGG: ypg:YpAngola_A3942 type III secretion apparatus
protein, YscD/HrpQ family"
/codon_start=1
/transl_table=11
/product="YscD/HrpQ family type III secretion apparatus
protein"
/protein_id="YP_001870783.1"
/db_xref="GI:186893671"
/db_xref="InterPro:IPR012843"
/db_xref="GeneID:6260853"
/translation="MTTVFKLRLLNGDLNGRELILPEGEFTLGEQGCDVLLPLSDGNI
VTLCVNEYQVMIQVAEEVWINGAQHDLHTPLPLLQSIEIAGLVFVLGEQTDILSGIKV
THRARFPLLVWLAIAICVPLSLLFVFLFWLTTQPETLRASIPADVPTQLAERLREPAL
QGIKGTWLADGSVTLSGHCASSSMMEPLQHFLLRNHIAFRNQLVCDDRLIASVSDLLH
QHGYHDIEVRIGDEPGNIVIYGAVQMGDQWLTVQDTLAAVSGLKGWLVVNAHSGQIQQ
LVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQLKETLAALSQQQPGFPSVRYQNI
PASDRTDQFLPAKVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLK
ANNLVHIPMDF"
misc_feature 376768..377976
/locus_tag="YPTS_0337"
/note="type III secretion system protein SsaD;
Provisional; Region: PRK15367"
/db_xref="CDD:185265"
misc_feature 376780..377970
/locus_tag="YPTS_0337"
/note="type III secretion apparatus protein, YscD/HrpQ
family; Region: type_III_yscD; TIGR02500"
/db_xref="CDD:162890"
gene 377998..378219
/locus_tag="YPTS_0338"
/db_xref="GeneID:6260854"
CDS 377998..378219
/locus_tag="YPTS_0338"
/note="TIGRFAM: type III secretion system protein, YseE
family;
KEGG: yps:YPTB0314 hypothetical protein"
/codon_start=1
/transl_table=11
/product="YseE family type III secretion system protein"
/protein_id="YP_001870784.1"
/db_xref="GI:186893672"
/db_xref="InterPro:IPR012671"
/db_xref="GeneID:6260854"
/translation="MQHITVLEEDIKHDPTAIQQRKEILARGRRLITCQLSLLQTPEN
YQSLNNMMLALQRAEEIIEILTLRYGNKE"
misc_feature 378007..378207
/locus_tag="YPTS_0338"
/note="type III secretion system protein, YseE family;
Region: type_III_yscE; TIGR02501"
/db_xref="CDD:162891"
gene 378326..379033
/locus_tag="YPTS_0339"
/db_xref="GeneID:6260855"
CDS 378326..379033
/locus_tag="YPTS_0339"
/note="PFAM: helix-turn-helix- domain containing protein
AraC type;
KEGG: ypi:YpsIP31758_3827 transcriptional regulator, AraC
family"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_001870785.1"
/db_xref="GI:186893673"
/db_xref="InterPro:IPR000005"
/db_xref="GeneID:6260855"
/translation="MKSIQFILFRQEGVLRSDGERYVIPAGKLVIADEQASASAFANS
AITSILCYPIDLFPIYQDLARRTLPLNKGHLPHAVNDKYKVLPANVEIIQAAEELINI
ERVASLRFLYLYCLGIDNVYFSKLLDSIVGTNNELLEFFEKNRLNPWSVSRYANELGI
STRKLNFLFYEKFGMSAKQWLLDQRLKKGCELLLSTRLRVADIAMECGFSNHAHFSDS
FRRRFQQCPSHMRSLIE"
misc_feature 378785..379018
/locus_tag="YPTS_0339"
/note="Helix-turn-helix domain; Region: HTH_18; pfam12833"
/db_xref="CDD:205096"
misc_feature 378905..379009
/locus_tag="YPTS_0339"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 379043..379258
/locus_tag="YPTS_0340"
/db_xref="GeneID:6260856"
CDS 379043..379258
/locus_tag="YPTS_0340"
/note="TIGRFAM: type III secretion system needle protein;
KEGG: yps:YPTB0316 putative type III secretion apparatus"
/codon_start=1
/transl_table=11
/product="type III secretion system needle protein"
/protein_id="YP_001870786.1"
/db_xref="GI:186893674"
/db_xref="InterPro:IPR011841"
/db_xref="GeneID:6260856"
/translation="MQISSPMGQLTNDIQQARQAYQNQMAAVNINEPEQMLKSQFTMN
QYSAFLDLKSIEMKMINDIRNRILSRI"
misc_feature 379043..379255
/locus_tag="YPTS_0340"
/note="Type III secretion needle MxiH like; Region: MxiH;
cl09641"
/db_xref="CDD:209053"
gene 379255..379503
/locus_tag="YPTS_0341"
/db_xref="GeneID:6260857"
CDS 379255..379503
/locus_tag="YPTS_0341"
/note="TIGRFAM: type III secretion system protein, SsaH
family;
KEGG: ypi:YpsIP31758_3825 type III secretion system
protein, SsaH family"
/codon_start=1
/transl_table=11
/product="SsaH family type III secretion system protein"
/protein_id="YP_001870787.1"
/db_xref="GI:186893675"
/db_xref="InterPro:IPR010437"
/db_xref="GeneID:6260857"
/translation="MSLLSADCRQLVVEAALAGVNHSLLAEAHDIVNALPLLIPDPQV
RLVCEAMLRFGLGDKVQARALLATSGEEDAQILLGLLQ"
misc_feature 379264..379500
/locus_tag="YPTS_0341"
/note="type III secretion system protein, SsaH family;
Region: type_III_ssaH; TIGR02498"
/db_xref="CDD:131550"
gene 379601..379852
/locus_tag="YPTS_0342"
/db_xref="GeneID:6260858"
CDS 379601..379852
/locus_tag="YPTS_0342"
/note="TIGRFAM: type III secretion apparatus protein,
YscI/HrpB family;
PFAM: type III secretion system YscI/HrpB domain protein;
KEGG: yps:YPTB0318 putative type III secretion apparatus"
/codon_start=1
/transl_table=11
/product="YscI/HrpB family type III secretion apparatus
protein"
/protein_id="YP_001870788.1"
/db_xref="GI:186893676"
/db_xref="InterPro:IPR012670"
/db_xref="GeneID:6260858"
/translation="MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMT
PESLLMQQAEWMHASLAIDLTAKVAGVMGQNINKLVNMQ"
misc_feature 379676..379840
/locus_tag="YPTS_0342"
/note="Type III secretion needle MxiH like; Region: MxiH;
pfam09392"
/db_xref="CDD:204227"
gene 379849..380580
/locus_tag="YPTS_0343"
/db_xref="GeneID:6260859"
CDS 379849..380580
/locus_tag="YPTS_0343"
/note="TIGRFAM: type III secretion apparatus lipoprotein,
YscJ/HrcJ family;
PFAM: secretory protein YscJ/FliF family protein;
KEGG: ypi:YpsIP31758_3822 type III secretion apparatus
lipoprotein, YscJ/HrcJ family"
/codon_start=1
/transl_table=11
/product="YscJ/HrcJ family type III secretion apparatus
lipoprotein"
/protein_id="YP_001870789.1"
/db_xref="GI:186893677"
/db_xref="InterPro:IPR003282"
/db_xref="InterPro:IPR006182"
/db_xref="GeneID:6260859"
/translation="MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQ
INAEKQIEKSGMVGLTVDKRQFINAVELLRQNGFPRQRFITVDELFPANQLVTSPTQE
QAKMVFLKEQQLENMLSHMDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQ
SYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMV
QNMVGVAFISLIVLMFVGWFYSRRR"
misc_feature 379849..380577
/locus_tag="YPTS_0343"
/note="Type III secretory pathway, lipoprotein EscJ
[Intracellular trafficking and secretion]; Region: EscJ;
COG4669"
/db_xref="CDD:34287"
gene 380755..381348
/locus_tag="YPTS_0344"
/db_xref="GeneID:6260860"
CDS 380755..381348
/locus_tag="YPTS_0344"
/note="KEGG: ypi:YpsIP31758_3821 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870790.1"
/db_xref="GI:186893678"
/db_xref="GeneID:6260860"
/translation="MAFSPSIDVQYLHQLAWRPAQFAHPLWLAAVGVNPENYGYGRSR
ALDSALNGMLIQRRKFPQQCLPAVLNPRQQRQIAQRQRLPALCLALGVVSLQCDDYLR
LRRYRQVLSPLLNDDDIQQIIGMGYRGQWQASLSPQQLPDVALRLGQSLACQVRSNNI
IWQAVSILLPPNPRALCLSRSMQAQTEAWLSRLERLL"
misc_feature 380782..381267
/locus_tag="YPTS_0344"
/note="Type III secretion system subunit; Region:
T3SS_LEE_assoc; pfam13327"
/db_xref="CDD:205507"
gene 381345..381992
/locus_tag="YPTS_0345"
/db_xref="GeneID:6260861"
CDS 381345..381992
/locus_tag="YPTS_0345"
/note="TIGRFAM: type III secretion apparatus protein,
HrpE/YscL family;
KEGG: ypi:YpsIP31758_3820 type III secretion apparatus
protein, HrpE/YscL family"
/codon_start=1
/transl_table=11
/product="HrpE/YscL family type III secretion apparatus
protein"
/protein_id="YP_001870791.1"
/db_xref="GI:186893679"
/db_xref="InterPro:IPR012842"
/db_xref="GeneID:6260861"
/translation="MNPFHLEIEKYGYPLPPGVVIPAAYLAEAMHSQDLLAQANAQAA
EILQAAEQARVLLLDQAAEQADALIGQARVQMETALLAQHVRWLVGAEQLESLLITQV
RHRILAAITTVVTTWSGEQPMSQILIQRLGDQAEKMAQQGELTLRVHPQHLPAVTTAL
GERLRCVGDTEMAADQAQLSSPMLQLTLSLHHHLSQLVLWLQQSPDLFDEENVYE"
misc_feature <381552..381893
/locus_tag="YPTS_0345"
/note="type III secretion apparatus protein, HrpE/YscL
family; Region: HrpE_YscL_not; TIGR02499"
/db_xref="CDD:162889"
misc_feature <381567..381887
/locus_tag="YPTS_0345"
/note="type III secretion system protein SsaK;
Provisional; Region: PRK15354"
/db_xref="CDD:185252"
gene 381985..384033
/locus_tag="YPTS_0346"
/db_xref="GeneID:6260862"
CDS 381985..384033
/locus_tag="YPTS_0346"
/note="with SsaC forms part of a protein export system
across the inner and outer cell membranes; part of the
Salmonella pathogenicity island 2; part of the type III
secretion system"
/codon_start=1
/transl_table=11
/product="secretion system apparatus protein SsaV"
/protein_id="YP_001870792.1"
/db_xref="GI:186893680"
/db_xref="InterPro:IPR001712"
/db_xref="InterPro:IPR006302"
/db_xref="GeneID:6260862"
/translation="MSKSALVRGLTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLL
IAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTLYRLALTISTTRLVLLQHDAGEI
VEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSID
GDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILVNIIGGITI
GVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNKQSLANELA
VQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFLLYRKNRRISQDGRA
NGGGEEGAATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEI
RCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRPCSSLVTNNQALGAKMGSFDWLDA
KQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELVKE
LQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH
LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAE
NQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIELIGDELDETA
"
misc_feature 381991..384015
/locus_tag="YPTS_0346"
/note="secretion system apparatus protein SsaV;
Provisional; Region: PRK12720"
/db_xref="CDD:183699"
misc_feature 381997..384006
/locus_tag="YPTS_0346"
/note="Type III secretory pathway, component EscV
[Intracellular trafficking and secretion]; Region: EscV;
COG4789"
/db_xref="CDD:34399"
gene 384020..385357
/locus_tag="YPTS_0347"
/db_xref="GeneID:6260863"
CDS 384020..385357
/locus_tag="YPTS_0347"
/EC_number="3.6.3.15"
/note="KEGG: yps:YPTB0323 type III secretion system
ATPase;
TIGRFAM: ATPase, FliI/YscN family; type III secretion
apparatus H+-transporting two-sector ATPase;
PFAM: H+transporting two-sector ATPase alpha/beta subunit
central region; H+transporting two-sector ATPase
alpha/beta subunit domain protein;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="type III secretion system ATPase"
/protein_id="YP_001870793.1"
/db_xref="GI:186893681"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004100"
/db_xref="InterPro:IPR005714"
/db_xref="InterPro:IPR013380"
/db_xref="GeneID:6260863"
/translation="MKLPDIARLTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRAS
LPNVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVG
ADLAGRILDGLGAPIDGGPPLTGQWRELDCPPPSPLTRQPVEQMLTTGIRAIDGILSC
GEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLALIGERGREVREFLEQVLTPEARA
RTVVVVATSDRPALERLKGLSTATTVAEYFRERGLKVLLLADSLTRYARAAREIGLAA
GEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLVEGDDMNEPVADEVRSLLD
GHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEIELLVQ
IGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDPDTAHLDTTLEHLAQVVG"
misc_feature 384020..385354
/locus_tag="YPTS_0347"
/note="type III secretion system ATPase; Validated;
Region: PRK06820"
/db_xref="CDD:180712"
misc_feature 384308..385279
/locus_tag="YPTS_0347"
/note="Flagellum-specific ATPase/type III secretory
pathway virulence-related protein. This group of ATPases
are responsible for the export of flagellum and
virulence-related proteins. The bacterial flagellar motor
is similar to the F0F1-ATPase, in that they...; Region:
ATPase_flagellum-secretory_path_III; cd01136"
/db_xref="CDD:30002"
misc_feature 384530..384550
/locus_tag="YPTS_0347"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:30002"
misc_feature 384785..384799
/locus_tag="YPTS_0347"
/note="Walker B motif; other site"
/db_xref="CDD:30002"
gene 385420..385755
/locus_tag="YPTS_0348"
/db_xref="GeneID:6260864"
CDS 385420..385755
/locus_tag="YPTS_0348"
/note="KEGG: yps:YPTB0324 type III secretion system
apparatus protein"
/codon_start=1
/transl_table=11
/product="type III secretion system apparatus protein"
/protein_id="YP_001870794.1"
/db_xref="GI:186893682"
/db_xref="GeneID:6260864"
/translation="MRQQLGQLRREQQQQEQQLENGRRRHQQLCQQLQQLAQWCGMLT
PREADEQKVLRQAVYQAERQAKKQLNAWVAQGRQQVSAIERQQARLQRNQREQEKLRM
LTEDESNRY"
misc_feature <385555..>385749
/locus_tag="YPTS_0348"
/note="ATPase components of ABC transporters with
duplicated ATPase domains [General function prediction
only]; Region: Uup; COG0488"
/db_xref="CDD:30834"
gene 385736..386134
/locus_tag="YPTS_0349"
/db_xref="GeneID:6260865"
CDS 385736..386134
/locus_tag="YPTS_0349"
/note="KEGG: ypi:YpsIP31758_3816 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870795.1"
/db_xref="GI:186893683"
/db_xref="GeneID:6260865"
/translation="MSRIDIEGALPPLREQGYSKERSTHWDHERQRQQFARCFSSPLP
RIQNIACTVAGYDDNGLMETHYRIVSGPLCGTKVSVSMTAHGLRIVLSNTESKLIERL
QRIQNRWQRQLHQLGFPCLLEVTCADESDA"
gene 386112..387074
/locus_tag="YPTS_0350"
/db_xref="GeneID:6260866"
CDS 386112..387074
/locus_tag="YPTS_0350"
/note="TIGRFAM: type III secretion system apparatus
protein YscQ/HrcQ;
PFAM: surface presentation of antigens (SPOA) protein;
KEGG: ypp:YPDSF_3701 type III secretion system apparatus
protein"
/codon_start=1
/transl_table=11
/product="type III secretion system protein"
/protein_id="YP_001870796.1"
/db_xref="GI:186893684"
/db_xref="InterPro:IPR001172"
/db_xref="InterPro:IPR001543"
/db_xref="InterPro:IPR013385"
/db_xref="GeneID:6260866"
/translation="MLTNLTPELRALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYG
GQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIAMANWAVTPLLAPFTDLVVLAES
PQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAALADTLSHWPHEAVTAPDLLWQSGL
VAGWCHLSLRQLRQLGPGEGLRLSMAAELDKEACWVWHHASPQIYIKLEGGNRMTIQQ
INEASDPLACGSRAESPPLAAVQLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQT
HCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQNGENIME"
misc_feature 386112..387062
/locus_tag="YPTS_0350"
/note="type III secretion system protein SsaQ; Validated;
Region: PRK08035"
/db_xref="CDD:181204"
misc_feature 386679..387041
/locus_tag="YPTS_0350"
/note="Flagellar motor switch/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion]; Region: FliN; COG1886"
/db_xref="CDD:32070"
gene 387141..387851
/locus_tag="YPTS_0351"
/db_xref="GeneID:6260867"
CDS 387141..387851
/locus_tag="YPTS_0351"
/note="part of a set of proteins involved in the infection
of eukaryotic cells; in plant pathogens involved in the
hypersensitivity response"
/codon_start=1
/transl_table=11
/product="type III secretion system protein"
/protein_id="YP_001870797.1"
/db_xref="GI:186893685"
/db_xref="InterPro:IPR005773"
/db_xref="InterPro:IPR005837"
/db_xref="InterPro:IPR005838"
/db_xref="GeneID:6260867"
/translation="MRNSLLFILSETDDLYETDHMELLNSSYQLIALLFMLSVLPLLV
VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEE
LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL
ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF
VLVDGWSLVLGQLVGSYL"
misc_feature 387201..387839
/locus_tag="YPTS_0351"
/note="type III secretion system protein YscR;
Provisional; Region: PRK12797"
/db_xref="CDD:183754"
gene 387848..388141
/locus_tag="YPTS_0352"
/db_xref="GeneID:6260868"
CDS 387848..388141
/locus_tag="YPTS_0352"
/note="TIGRFAM: type III secretion protein, HrpO family;
PFAM: export protein FliQ family 3;
KEGG: yps:YPTB0328 putative type III secretion apparatus
protein EscS/SsaS/YscS"
/codon_start=1
/transl_table=11
/product="HrpO family type III secretion protein"
/protein_id="YP_001870798.1"
/db_xref="GI:186893686"
/db_xref="InterPro:IPR002191"
/db_xref="InterPro:IPR006306"
/db_xref="GeneID:6260868"
/translation="MNNHMSSYHENAIIVHLATELLWLVLLLSLPVVVVASTVGLVIS
LVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGATLLNYTQQSFLQITSMRP"
misc_feature <387974..388138
/locus_tag="YPTS_0352"
/note="Type III secretory pathway, component EscS
[Intracellular trafficking and secretion]; Region: EscS;
COG4794"
/db_xref="CDD:34403"
gene 388143..388937
/locus_tag="YPTS_0353"
/db_xref="GeneID:6260869"
CDS 388143..388937
/locus_tag="YPTS_0353"
/note="TIGRFAM: type III secretion protein SpaR/YscT/HrcT;
PFAM: type III secretion system inner membrane R protein;
KEGG: ypi:YpsIP31758_3812 type III secretion apparatus
protein SpaR/YscT/HrcT"
/codon_start=1
/transl_table=11
/product="type III secretion protein SpaR/YscT/HrcT"
/protein_id="YP_001870799.1"
/db_xref="GI:186893687"
/db_xref="InterPro:IPR002010"
/db_xref="InterPro:IPR006304"
/db_xref="GeneID:6260869"
/translation="MTDVLPGLTALALAMMRPYGILLILPLFTARSLGSSLLRNGLIV
AIALPVTPLFLSAPIITNSSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLIDT
LRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQG
IQPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMP
IKSALALFLLLISLPYGLHHYLSRMSDTEQKIGTLIPLIKGGNDVH"
misc_feature 388143..388919
/locus_tag="YPTS_0353"
/note="Type III secretory pathway, component EscT
[Intracellular trafficking and secretion]; Region: EscT;
COG4791"
/db_xref="CDD:34401"
gene 388927..389994
/locus_tag="YPTS_0354"
/db_xref="GeneID:6260870"
CDS 388927..389994
/locus_tag="YPTS_0354"
/note="member of a type III secretion system which is part
of a pathogenicity island in Salmonella, Yersinia and
pathogenic Escherichia coli"
/codon_start=1
/transl_table=11
/product="secretion system apparatus protein SsaU"
/protein_id="YP_001870800.1"
/db_xref="GI:186893688"
/db_xref="InterPro:IPR006135"
/db_xref="InterPro:IPR006307"
/db_xref="GeneID:6260870"
/translation="MSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLL
TGYSLVEQAKALIRSSIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAG
IAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ
YAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSH
DEVKREHKDSNGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPE
ETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPV
AALLRMALELDYQPSSDDPPR"
misc_feature 388930..389976
/locus_tag="YPTS_0354"
/note="secretion system apparatus protein SsaU; Reviewed;
Region: PRK12721"
/db_xref="CDD:183700"
misc_feature 389728..389961
/locus_tag="YPTS_0354"
/note="Uncharacterized homolog of the cytoplasmic domain
of flagellar protein FhlB [Function unknown]; Region:
COG2257; cl15822"
/db_xref="CDD:210222"
gene 390190..391404
/locus_tag="YPTS_0355"
/db_xref="GeneID:6260871"
CDS 390190..391404
/locus_tag="YPTS_0355"
/note="PFAM: protein of unknown function DUF395 YeeE/YedE;
KEGG: yps:YPTB0331 predicted inner membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870801.1"
/db_xref="GI:186893689"
/db_xref="InterPro:IPR007272"
/db_xref="GeneID:6260871"
/translation="MSWPEFKSQYLVRFWAPLPAVIAAGILATYYFGLTGTFWAVTGE
FTRWGGHIMQLFGAQPQEWGYFKVIGLEGTPLDRIDGMMIIGMFAGCIAAALWANNIK
LRKPQHTIRIAQALVGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSY
FGAKFTLLPLFRIPIKLQKVTAASPLTQHPARAARRFRLGMVVLVLALGWSLIELFRQ
PKLGIAMLCGIGFGLLIERAQICFTSAFRDLWITGRTHMAKAIILGMAVSTLGIFSYV
QLGVEPKILWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQIHYWWVGLGNIIGA
TLLAYYWDDFAPALATNYDKVNLLETFGPMGGLLVTYLMLALAFAAMLWWEKRFFRKQ
KATTSALIKESL"
misc_feature 390202..391383
/locus_tag="YPTS_0355"
/note="putative inner membrane protein; Provisional;
Region: PRK11099"
/db_xref="CDD:182961"
misc_feature 390523..390645
/locus_tag="YPTS_0355"
/note="Sulphur transport; Region: Sulf_transp; pfam04143"
/db_xref="CDD:190881"
gene 391401..391670
/locus_tag="YPTS_0356"
/db_xref="GeneID:6260872"
CDS 391401..391670
/locus_tag="YPTS_0356"
/note="PFAM: SirA family protein;
KEGG: ypi:YpsIP31758_3809 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870802.1"
/db_xref="GI:186893690"
/db_xref="InterPro:IPR001455"
/db_xref="GeneID:6260872"
/translation="MSHSPSVETPQLAAPIVPDYRLDMVGEPCPYPAVATLEAMPQLK
PGEILEVISDCPQSINNIPLDARNYGYTVLDIQQDGPTIRYLIQR"
misc_feature 391461..391667
/locus_tag="YPTS_0356"
/note="YedF is a bacterial SirA-like protein of unknown
function. SirA (also known as UvrY, and YhhP) belongs
to a family of a two-component response regulators that
controls secondary metabolism and virulence. The other
member of this two-component system...; Region: YedF;
cd03422"
/db_xref="CDD:48208"
misc_feature order(391464..391469,391476..391478,391485..391496,
391500..391502)
/locus_tag="YPTS_0356"
/note="CPxP motif; other site"
/db_xref="CDD:48208"
gene complement(391748..392731)
/locus_tag="YPTS_0357"
/db_xref="GeneID:6260873"
CDS complement(391748..392731)
/locus_tag="YPTS_0357"
/note="PFAM: regulatory protein LysR; LysR
substrate-binding;
KEGG: ypi:YpsIP31758_3808 substrate-binding
transcriptional regulator, LysR family"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_001870803.1"
/db_xref="GI:186893691"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:6260873"
/translation="MSIDENTFAFSAKINNHAIYKYLENFIKIVECNSLSIAAHKLNI
TPSSTSRSLAQLEEKLGVVLLKRTTRSIVLTDAGDYLFHQARQLLLDLDETLVNTHSF
YNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCLSVDLNDQLVNLNEEHFDIALR
ITSIPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIEDLEQHDCLVNPNVSDAWLYK
STEGESVPLKIKNTVQANSSLGLLHAALHHQGIVCLPTYMLGDYITSGKLVPILLDYN
AKDKEYGLYALYYPSKYNDPKIRSFIDFMLDELSMDVPWDKWRADYQISLS"
misc_feature complement(391787..392665)
/locus_tag="YPTS_0357"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(392498..392665)
/locus_tag="YPTS_0357"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(391817..392410)
/locus_tag="YPTS_0357"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(391880..391882,391967..391969,
392018..392020,392201..392203,392207..392209,
392249..392251,392366..392368,392378..392380))
/locus_tag="YPTS_0357"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(391991..391993,392000..392005,
392024..392038,392120..392122,392303..392323,
392327..392329,392339..392341,392348..392353,
392357..392362,392372..392377))
/locus_tag="YPTS_0357"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene 392901..394187
/locus_tag="YPTS_0358"
/db_xref="GeneID:6260874"
CDS 392901..394187
/locus_tag="YPTS_0358"
/note="KEGG: ypi:YpsIP31758_3807 putative serine
transporter"
/codon_start=1
/transl_table=11
/product="putative serine transporter"
/protein_id="YP_001870804.1"
/db_xref="GI:186893692"
/db_xref="GeneID:6260874"
/translation="MSEISSSKSELKKLYKSVPFTQYDVGWVILCIGMAIGSGIVFMP
VQVGIKGIWVFIAAVIISYPAIYLLQNLYLRTLSESDNCTDYTSVITQYLGKNWGVGL
GIAYFLMLLHGMFSYSLAVTFDSASYIKTFGLTEGLLSDSIWYGLIILTVLVAIAAQG
EKILFKVSGPMVCVKFGIIVVLGVVMVPYWDFNNISAFPELFSFLRDVLLTLPFTLFS
ILFVQILSPMNIAYRKVESDKRIATYRAIRANRVAYIILAVAVLFFAFSFTFSISHEQ
AVSAFEQNISALAIAAQVIPGSIVRIMTALLNIFAILTAFLGIYLGFQEAIKGIVVNI
ISRFIPEENINQKVLHIGVCVGVILTLWLWVSTRFSILFFLQLGGPLFGVVSCLIPCY
LVYKVPVLHKLKGPTIWFISFFGILLCLSPFFKFFE"
misc_feature 392952..394181
/locus_tag="YPTS_0358"
/note="Amino acid permeases [Amino acid transport and
metabolism]; Region: SdaC; COG0814"
/db_xref="CDD:31156"
misc_feature 392958..394151
/locus_tag="YPTS_0358"
/note="Transmembrane amino acid transporter protein;
Region: Aa_trans; cl15776"
/db_xref="CDD:210176"
gene 394233..395414
/locus_tag="YPTS_0359"
/db_xref="GeneID:6260875"
CDS 394233..395414
/locus_tag="YPTS_0359"
/note="TIGRFAM: cystathionine beta-lyase;
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent
protein;
KEGG: yps:YPTB0335 cystathionine beta-lyase"
/codon_start=1
/transl_table=11
/product="cystathionine beta-lyase"
/protein_id="YP_001870805.1"
/db_xref="GI:186893693"
/db_xref="InterPro:IPR000277"
/db_xref="InterPro:IPR006233"
/db_xref="GeneID:6260875"
/translation="MNKKDISSFGISTQITQLGRNPQEQTGFVNTPIYRGSTVIFNTV
DDIVNNRAVFNYGTAGTPTIANLESAWTALAGAAGTVISPSGLGVIALALLTTLKAGD
HLLMPDSVYKPTRLLCAGLIARMGVETTYYDPLIGAEIETLMKPNTSTLFLESPGSQS
FEIQDIPMMTAITKRRGIATIIDNTWASPLFFAAHKHGCDLSLEAGTKYLGGHSDLLM
GLVSANEQWWPKLRETYDSMAMLPGAEDCFLALRGLRTLHLRIKEAEKRGLEMAQWLK
ERPEVLRVLHPAFPDCPGHEFWKRDFTGSSGLFSIVLKPEFTQKGLAEMLDNMSIFAM
GFSWGGYESLVIPFDCSEYRTVTKWNPGGLTIRLQIGLEDMEDLKEDLAQGFIRLASN
S"
misc_feature 394254..395396
/locus_tag="YPTS_0359"
/note="cystathionine beta-lyase; Provisional; Region:
PRK09028"
/db_xref="CDD:181615"
misc_feature 394317..395390
/locus_tag="YPTS_0359"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:214046"
misc_feature order(394488..394493,394500..394502,394692..394694,
394779..394781,394788..394790,394845..394847,
394854..394856)
/locus_tag="YPTS_0359"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 394854..394856
/locus_tag="YPTS_0359"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(395555..396355)
/gene="hmuV"
/locus_tag="YPTS_0360"
/db_xref="GeneID:6260876"
CDS complement(395555..396355)
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="with HmuTU is involved in the transport of hemin"
/codon_start=1
/transl_table=11
/product="hemin importer ATP-binding subunit"
/protein_id="YP_001870806.1"
/db_xref="GI:186893694"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6260876"
/translation="MVDMAVTPVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIG
PNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSV
SEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLW
QPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRI
MLLAQGKLVACGTPEEVLNAETLTQWYQADLGVSRHPESALPQIYLRQ"
misc_feature complement(395561..396328)
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="hemin importer ATP-binding subunit; Provisional;
Region: hmuV; PRK13548"
/db_xref="CDD:184133"
misc_feature complement(395666..396319)
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature complement(396203..396226)
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature complement(order(395738..395740,395837..395842,
395984..395986,396200..396208,396212..396217))
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature complement(order(395984..395992,396089..396091))
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature complement(395903..395932)
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature complement(395837..395854)
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature complement(395819..395830)
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature complement(395732..395752)
/gene="hmuV"
/locus_tag="YPTS_0360"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene complement(396348..397352)
/locus_tag="YPTS_0361"
/db_xref="GeneID:6260877"
CDS complement(396348..397352)
/locus_tag="YPTS_0361"
/note="PFAM: transport system permease protein;
KEGG: ypi:YpsIP31758_3804 hemin ABC transporter, permease
protein HmuU"
/codon_start=1
/transl_table=11
/product="transport system permease"
/protein_id="YP_001870807.1"
/db_xref="GI:186893695"
/db_xref="InterPro:IPR000522"
/db_xref="GeneID:6260877"
/translation="MNGRVQPRLMLGFLLILLVILALGSANMGALSLSFRTLWNTSTN
DAMWHIWLNIRLPRVLLAVVVGCALAVSGTIMQGLFRNPLADPGLLGISSGAALCVGL
IIVMPFSLPPLLALYSHMVGAFIGSLAISTIIFTLSRWGHGNLARLLLAGIAINALCG
AAVGVLTYISDDQQLRQFSLWSMGSLGQAQWSTLLVASSLILPTCILGLLQARQLNLL
QLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAVSGVIGFIGLVVPHLIRMRIGADH
RWLLPGAALGGACLLLTADTLARTLVAPAEMPVGLLTSLLGGPYFLWLILRQREQRSG
"
misc_feature complement(396366..>397211)
/locus_tag="YPTS_0361"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:182563"
misc_feature complement(396378..397139)
/locus_tag="YPTS_0361"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(396525..396527,396546..396548,
396669..396677,396681..396698,396702..396707,
396711..396719,396723..396728,397104..397112,
397122..397124))
/locus_tag="YPTS_0361"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(396378..396380,396387..396392,
396399..396401,396408..396413,396420..396422,
396576..396578,396804..396806,396813..396818,
396852..396854,396858..396863,396870..396872,
396879..396884,396891..396896,396903..396908,
396912..396914,397086..397088,397101..397103,
397107..397109))
/locus_tag="YPTS_0361"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(396429..396431,396453..396455,
396588..396590,396600..396602,396774..396776,
396852..396854))
/locus_tag="YPTS_0361"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(397349..398188)
/locus_tag="YPTS_0362"
/db_xref="GeneID:6260878"
CDS complement(397349..398188)
/locus_tag="YPTS_0362"
/note="PFAM: periplasmic binding protein;
KEGG: ypi:YpsIP31758_3803 hemin ABC transporter,
periplasmic hemin-binding protein"
/codon_start=1
/transl_table=11
/product="periplasmic binding protein"
/protein_id="YP_001870808.1"
/db_xref="GI:186893696"
/db_xref="InterPro:IPR002491"
/db_xref="GeneID:6260878"
/translation="MRLRLLSLPLILSLCAPLLPLNTLAAERIVTIGGDVTEIAYALG
AGDEIVARDSTSQQPQAAQKLPDVGYMRTLNAEGILAMKPTMLLVSELAQPSLVLTQI
ASSGVNVVTVPGQTTPESVAMKINAVATALHQTEKGQKLIEDYQQRLAAVNKTPLPVK
VLFVMSHGGLTPMAAGQNTAADAMIRAAGGSNAMQGFSRYRPLSQEGVIASAPDLLLI
TTDGVKALGSSENIWKLPGMALTPAGKHKRLLVVDDMALLGFGLETPQVLAQLREKME
QMQ"
misc_feature complement(397421..398110)
/locus_tag="YPTS_0362"
/note="Hemin binding protein HutB. These proteins have
been shown to function as initial receptors in ABC
transport of hemin and hemoproteins in many eubacterial
species. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a...;
Region: HutB; cd01149"
/db_xref="CDD:29752"
misc_feature complement(397427..398104)
/locus_tag="YPTS_0362"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:144914"
misc_feature complement(398006..398008)
/locus_tag="YPTS_0362"
/note="putative hemin binding site; other site"
/db_xref="CDD:29752"
gene complement(398185..399222)
/locus_tag="YPTS_0363"
/db_xref="GeneID:6260879"
CDS complement(398185..399222)
/locus_tag="YPTS_0363"
/note="PFAM: Haemin-degrading family protein;
KEGG: yps:YPTB0339 possible hemin degradation/transport
protein HmuS"
/codon_start=1
/transl_table=11
/product="hemin-degrading family protein"
/protein_id="YP_001870809.1"
/db_xref="GI:186893697"
/db_xref="InterPro:IPR007845"
/db_xref="GeneID:6260879"
/translation="MNASLYQQYVQAKAEHPGKYARDLATLMGISEAELTHSRVGHDA
KRLQSDARALLAALESVGEVKAITRNTYAVHEQVGRYENQHLNGHAGLILNPRALDLR
LFLNQWASAFTLTEETRHGVRHSIQFFDHQGDALHKVYVTEQTDMSAWEALLAQFIIP
ENPALQLEPLSTPEAVEPTADDATVDSEWRAMTDVHQFFQLLKRNNLTRQQAFRAVGD
DLAYQVDNNSLTQLLHIAQQDQNEIMIFVGNRGCVQIFTGLIEKVTPHNEWINVFNQR
FTLHLIETAIAESWITRKPTKDGFVTSLELFAADGTQLAQLYGQRTEGQPEQNQWREQ
IARLINKDIAA"
misc_feature complement(398188..399222)
/locus_tag="YPTS_0363"
/note="Putative heme degradation protein [Inorganic ion
transport and metabolism]; Region: HemS; COG3720"
/db_xref="CDD:33515"
misc_feature complement(398752..399138)
/locus_tag="YPTS_0363"
/note="Haemin-degrading HemS.ChuX domain; Region: HemS;
pfam05171"
/db_xref="CDD:147384"
misc_feature complement(398209..398607)
/locus_tag="YPTS_0363"
/note="Haemin-degrading HemS.ChuX domain; Region: HemS;
pfam05171"
/db_xref="CDD:147384"
gene complement(399341..401371)
/locus_tag="YPTS_0364"
/db_xref="GeneID:6260880"
CDS complement(399341..401371)
/locus_tag="YPTS_0364"
/note="TIGRFAM: TonB-dependent
hemoglobin/transferrin/lactoferrin family receptor;
TonB-dependent heme/hemoglobin receptor family protein;
PFAM: TonB-dependent receptor; TonB-dependent receptor
plug;
KEGG: ypi:YpsIP31758_3801 TonB-dependent hemin receptor
HmuR"
/codon_start=1
/transl_table=11
/product="TonB-dependent heme/hemoglobin receptor family
protein"
/protein_id="YP_001870810.1"
/db_xref="GI:186893698"
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR010916"
/db_xref="InterPro:IPR010949"
/db_xref="InterPro:IPR011276"
/db_xref="InterPro:IPR012910"
/db_xref="GeneID:6260880"
/translation="MLRSTSDRFRWSSLSLAIACTLPLATQAADTTTTQTSSKKHSTD
TMVVTATGNERSSFEAPMMVTVIEGNAPTSQTAATAADMLRQVPGLTVTGSGRTNGQD
VVMRGYGKQGVLTLVDGVRQGTDTGHLNSTFLDPALVKRIEIVRGPAALLYGSGALGG
VIAYETVDAADMLQPGQNSGYRVYSSAATGDHSFGLGASAFGRTDDLDGILSFGTRDI
GNIRQSDGFNAPNDETISNVLAKGTWQIDSIQSLSANLRYYNNSAIEPKNPQTSAPSS
TNVMTNRSTIQRDAQLRYNIKPLDQEWLNATAQVYYSEVEINARPQGSAEEGRKQTTE
GVKLENRTRLFIESPASHLLTYGTETYKQEQTPGGATESFPQAKIRFSSGWLQDEITL
RDLPVSILAGTRYDNYSGSSDGYADVDADKWSSRGAISITPTDWLMLFGSYAQAFRAP
TMGEMYNDSKHFAIPIRPGLTLTNYWVPNPNLKPETNETQEYGFGLRFSDLLMAEDDL
QFKVSYFDTKAKDYISTRVDMQAMTTTSVNIDQAKIWGWDASMSYKTALFNWDLAYNR
TRGKNQNTDEWLDTINPDTVTSIVDVPVANSGFSVGWIGTFANRSSRVSSSTPQAGYG
VNDFYVSYKGQEAFKGMTTTMLLGNAFEKEYYAPQGIPQDGRNVKFFVSYQW"
misc_feature complement(399344..401236)
/locus_tag="YPTS_0364"
/note="TonB-dependent heme/hemoglobin receptor family
protein; Region: TonB-hemin; TIGR01785"
/db_xref="CDD:162536"
misc_feature complement(399344..401182)
/locus_tag="YPTS_0364"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature complement(order(400874..400900,400934..400966,
401006..401029,401048..401065,401099..401128,
401156..401182))
/locus_tag="YPTS_0364"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature complement(order(400382..400384,400421..400423))
/locus_tag="YPTS_0364"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene complement(401502..401693)
/locus_tag="YPTS_0365"
/db_xref="GeneID:6260881"
CDS complement(401502..401693)
/locus_tag="YPTS_0365"
/note="KEGG: ypi:YpsIP31758_3800 hemin uptake protein"
/codon_start=1
/transl_table=11
/product="hemin uptake protein"
/protein_id="YP_001870811.1"
/db_xref="GI:186893699"
/db_xref="GeneID:6260881"
/translation="MDKQLNKVPMLNDEPATEYSVARKPLSIASEQLLGEHGVAFIVH
QGECYQLRQTKSGKLILTK"
misc_feature complement(401505..401612)
/locus_tag="YPTS_0365"
/note="Hemin uptake protein hemP; Region: hemP; pfam10636"
/db_xref="CDD:151153"
gene complement(401779..402429)
/locus_tag="YPTS_0366"
/db_xref="GeneID:6260882"
CDS complement(401779..402429)
/locus_tag="YPTS_0366"
/note="PFAM: NmrA family protein;
KEGG: ypi:YpsIP31758_3799 NmrA family protein"
/codon_start=1
/transl_table=11
/product="NmrA family protein"
/protein_id="YP_001870812.1"
/db_xref="GI:186893700"
/db_xref="InterPro:IPR008030"
/db_xref="GeneID:6260882"
/translation="MRPWLIFGAGRGVGAHLLALANQHADSASNPRPVTLLIRNQQQA
EELRNKGLTVVCGDACDPASVREACQLAGEDAAIISTLGNNNANYQGNRLIIDTAEQL
GLKRMLLVTSIGCGDSWPTLSPAARAAFGQAVREKSLAESWLQTSNLIYTLIRPGGLL
DQPATGNAIRLQTEAHGMVTRADVAHHISQMIEDPATYYQAYALIEPGLARKVKMN"
misc_feature complement(401806..402423)
/locus_tag="YPTS_0366"
/note="atypical (a) SDRs, subgroup 5; Region: SDR_a5;
cd05243"
/db_xref="CDD:187554"
misc_feature complement(401848..402417)
/locus_tag="YPTS_0366"
/note="NADH(P)-binding; Region: NAD_binding_10; pfam13460"
/db_xref="CDD:205638"
misc_feature complement(order(401953..401964,402019..402021,
402094..402099,402169..402171,402181..402186,
402253..402258,402313..402315,402391..402402,
402406..402408))
/locus_tag="YPTS_0366"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187554"
misc_feature complement(order(402019..402021,402031..402033,
402094..402096,402166..402168))
/locus_tag="YPTS_0366"
/note="putative active site [active]"
/db_xref="CDD:187554"
gene complement(402463..403026)
/locus_tag="YPTS_0367"
/db_xref="GeneID:6260883"
CDS complement(402463..403026)
/locus_tag="YPTS_0367"
/note="PFAM: protein of unknown function DUF1008;
KEGG: yps:YPTB0343 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870813.1"
/db_xref="GI:186893701"
/db_xref="InterPro:IPR010413"
/db_xref="GeneID:6260883"
/translation="MNTSSSINTSSSMNRSSSMNRSPLAEFLATQPDGTLEQIAQDYQ
VSVLDVVRALPERVLVGAEHFDRIWDSMTEWGDVTTLVHTADVILEHKGPLPSGTHRH
GYFNLRSKQGLSGHIRAQNCQAIALLERPFMGMATASVQFFNQQGEVMFKVYVGRDEH
RQLRADGLAAFHQLAQQLLIEDPTLVK"
misc_feature complement(402529..402957)
/locus_tag="YPTS_0367"
/note="putative heme utilization carrier protein HutX;
Region: HutX; TIGR04108"
/db_xref="CDD:211904"
gene complement(403023..404336)
/locus_tag="YPTS_0368"
/db_xref="GeneID:6260884"
CDS complement(403023..404336)
/locus_tag="YPTS_0368"
/EC_number="1.3.99.22"
/note="catalyzes the oxygen-independent formation of
protoporphyrinogen-IX from coproporphyrinogen-III"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_001870814.1"
/db_xref="GI:186893702"
/db_xref="InterPro:IPR002110"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR010723"
/db_xref="GeneID:6260884"
/translation="MNIDLMPYYAQPGPLPFPKRWATMPWRDSRPLPAESLQDSWQSL
LQKALPRNKRLLYLHIPFCATHCTFCGFYQNPLQSGSTERYTDYLLRELSMEADSPLL
QGGPIHAVYFGGGTPSALSAQQLHSIISQLRKSLPLAPDCEITVEGRIFNFDDERIDA
CLEAGANRFSIGVQTFNTRIRQRMGRKADRDQAIRFLTDLATRDRAAVVCDLMFGLPH
QTPEIWQEDLAIVRQLPLDGVDLYALNLLPTTPLAKSVENNRVELPTLAQQCDFYCSG
ADSLAQAGWHQLSNSHWARTTRERNLYNLLIKQGADCLALGSGAGGSLQGHAYMQHRS
LDNYYRLIDSGQKPLMMMTQASGEHPWRAKLQSGIEVGRLDLSELIADPYPLMPLISQ
WYQSNLLKDNSFCLRLTDSGRFWASNIMQALQNIIPSLITAESHS"
misc_feature complement(403026..404336)
/locus_tag="YPTS_0368"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK09058"
/db_xref="CDD:181630"
misc_feature complement(403548..404150)
/locus_tag="YPTS_0368"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(403605..403610,403698..403700,
403821..403823,403890..403898,403989..403994,
403998..404000,404124..404132,404136..404138,
404142..404144,404148..404150))
/locus_tag="YPTS_0368"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(404677..405477)
/locus_tag="YPTS_0369"
/db_xref="GeneID:6260885"
CDS complement(404677..405477)
/locus_tag="YPTS_0369"
/note="PFAM: methylenetetrahydrofolate reductase;
KEGG: yps:YPTB0345 putative methylenetetrahydrofolate
reductase"
/codon_start=1
/transl_table=11
/product="methylenetetrahydrofolate reductase"
/protein_id="YP_001870815.1"
/db_xref="GI:186893703"
/db_xref="InterPro:IPR003171"
/db_xref="GeneID:6260885"
/translation="MERKLSFEMNSAKNEKEMENIFKLIEFTDTLDPIYYTVNTEIGS
SVWSDTYRTVIELREKTDVSLIPHITINNKKEREIMQIIEKYINVGICEFFVIRGDKH
VYDQDNPINYGVELIELIRRSHKHIGIKTSLYPDFHKETTEVKEEIDWNERKYQLGVN
EFISQLTLNTNALDFLSHWVDKERPFTPSIMPLGNFSFIEKFTSSNSIDYPLWIKKFA
NSKSNSNEDKENIGIEIIRFLCREYLNQRERLHVFTLNKVDVMKKIFQ"
misc_feature complement(404686..405465)
/locus_tag="YPTS_0369"
/note="Methylenetetrahydrofolate reductase (MTHFR).
5,10-Methylenetetrahydrofolate is reduced to
5-methyltetrahydrofolate by methylenetetrahydrofolate
reductase, a cytoplasmic, NAD(P)-dependent enzyme.
5-methyltetrahydrofolate is utilized by methionine
synthase...; Region: MTHFR; cd00537"
/db_xref="CDD:29637"
misc_feature complement(404686..405462)
/locus_tag="YPTS_0369"
/note="Methylenetetrahydrofolate reductase; Region: MTHFR;
pfam02219"
/db_xref="CDD:145399"
misc_feature complement(order(404719..404721,404983..404985,
404989..404991,405016..405021,405028..405030,
405037..405039,405058..405060,405064..405066,
405076..405078,405082..405084,405139..405144,
405181..405189,405274..405276,405358..405360))
/locus_tag="YPTS_0369"
/note="FAD binding site [chemical binding]; other site"
/db_xref="CDD:29637"
gene complement(405792..406280)
/locus_tag="YPTS_0370"
/db_xref="GeneID:6260886"
CDS complement(405792..406280)
/locus_tag="YPTS_0370"
/note="KEGG: ypi:YpsIP31758_3795 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870816.1"
/db_xref="GI:186893704"
/db_xref="GeneID:6260886"
/translation="MLLSTKQFRHYTLALLLASGKPVDADDIYDKLSCSGPTLTRALK
ELRETYNAEIRYSKSTHSYQLTEKGTLTPKVLRHIKDAIASHMIIKSHEELVASHVIL
DKEKKRSISLSLRMSVIRKIDRVVNQLEITRSEAVEILVNTYISELMLSVSQPPKGKK
SV"
misc_feature complement(<406095..406268)
/locus_tag="YPTS_0370"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cl17326"
/db_xref="CDD:247880"
gene complement(406677..407636)
/locus_tag="YPTS_0371"
/db_xref="GeneID:6260887"
CDS complement(406677..407636)
/locus_tag="YPTS_0371"
/note="KEGG: ypi:YpsIP31758_3794 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870817.1"
/db_xref="GI:186893705"
/db_xref="GeneID:6260887"
/translation="MKSTPSAYALGATLYMPATRTDIADIIIHNKISGLRSLVICLED
AVSEDDVPLAISQLSTLLGTLAVEKKRDGSAHWPLIFVRPRHEAMGLALITRFNLSAI
NGFVLPKFTQASITTWWEIMKETHLCMMPTLETEDVFDVAKMSTLARELENHPSRQRI
VALRIGGNDLMSVISMRRSRKLTLYDGPMGYVIKMLVSVFCPKNFALTAPVCEQIDNP
QLLETELALDIAHGLVGKTAIHPSQIEVIQRALMVDTHDHADALRILNSTQAVFKSQG
AMCEPSTHKRWAAAILERAQYYGIMPDFTAMAVRDAPRKHQSG"
misc_feature complement(406707..407603)
/locus_tag="YPTS_0371"
/note="Citrate lyase beta subunit [Carbohydrate transport
and metabolism]; Region: CitE; COG2301"
/db_xref="CDD:32456"
gene complement(407636..408715)
/locus_tag="YPTS_0372"
/db_xref="GeneID:6260888"
CDS complement(407636..408715)
/locus_tag="YPTS_0372"
/note="KEGG: ypi:YpsIP31758_3793 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870818.1"
/db_xref="GI:186893706"
/db_xref="GeneID:6260888"
/translation="MHDITPFSGSYLPDDIQFLLKPIQIEMTPVEVKEKLIQSGARHY
SDMLSQEPAPTEHHLTLFARALDQGATRMAREVVMLAKALINRFGDTPIVLASLVRAG
VPLGVMLHHTLRALGKTSFHYGISIIRDRGIDEVALSYIEQKHGTEGLVFVDGWTGKG
AITGELTRSLQGRPGYPELPRLVVLADPCGCSWLSATDDDWLIPFGIMGAPVSGLVSR
SLWSEKGLHGCVHCEHLQEFECSQLLVNTVADCRQQLDLSQIPAAEWDYQQNAALRIQ
SHQVVKKMAEQFEINSVNRIKPGIAEATRAVLRRVPDHVLVRHIDDPDVSLLVYLAKQ
KKIAIKEVGNELGQYRAITIIKKVI"
misc_feature complement(407648..408688)
/locus_tag="YPTS_0372"
/note="Protein of unknown function (DUF2983); Region:
DUF2983; pfam11202"
/db_xref="CDD:151644"
gene complement(408708..409520)
/locus_tag="YPTS_0373"
/db_xref="GeneID:6260889"
CDS complement(408708..409520)
/locus_tag="YPTS_0373"
/note="KEGG: ypi:YpsIP31758_3792 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870819.1"
/db_xref="GI:186893707"
/db_xref="GeneID:6260889"
/translation="MNKPVFLCDLDDTLFQTRRKMVDELDLPPFRVGALDRSLTPRSF
MTEEQSMLVDWLLEHAEFIPVTARGTEEISRVNIPFSSWAITTHGAVILTPDRQPDAG
WQDTVLTNLQPYRDRLIAMESRINDMMAERGLNAWCRINYEYGDTPVYFVMKHRDSTQ
IAELYAFNDQLESLFSTDGFYIHRNSNNIAWLPVCIEKGLATTYLLDKLRHEHGAFPV
LGFGDSLSDFSFMRHCHWFGMPAKSQFSQALTSHLFDNTTFNKNNVNGDNDA"
gene complement(409513..410649)
/locus_tag="YPTS_0374"
/db_xref="GeneID:6260890"
CDS complement(409513..410649)
/locus_tag="YPTS_0374"
/note="KEGG: ypi:YpsIP31758_3791 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870820.1"
/db_xref="GI:186893708"
/db_xref="GeneID:6260890"
/translation="MMTTQPPVYRRELSGGTLTVIPNSSNIPLDSLFDIAERRNPKRA
FLFVSKVLGRHIPVSPATMRNVYRQLAERFPADLPGPVLFIGMAETAVGLAAGVFQEL
RGTVAEPVFLTSTRHPVDGDLLCEFKENHSHATDHLLYLPSDPVLRARLQRARSVVLI
DDEATTGNTFINLLQALRDANLNGLEKVVAVTLTDWSGSALTERCPLPVTTVSLITGE
WNWSPIPDAPVPVMPACNVTARGKVAITDKQNWGRLGMDETRADIGHKVHVLAGEKVL
VLGTSEFVWQPFLLAERLEHAGANVKFSSITRSPIAQGHAINSIIAFSDNYGLGIPNF
LYNVAHQHFDRIIVCVETPAESIDPTLIEQLRTVAPCVEVIAYE"
misc_feature complement(410065..410448)
/locus_tag="YPTS_0374"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(410143..410157,410161..410169,
410380..410382,410386..410388))
/locus_tag="YPTS_0374"
/note="active site"
/db_xref="CDD:206754"
misc_feature complement(409555..410070)
/locus_tag="YPTS_0374"
/note="Protein of unknown function (DUF3706); Region:
DUF3706; pfam12500"
/db_xref="CDD:193053"
gene complement(410661..411722)
/locus_tag="YPTS_0375"
/db_xref="GeneID:6260891"
CDS complement(410661..411722)
/locus_tag="YPTS_0375"
/note="KEGG: yps:YPTB0351 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870821.1"
/db_xref="GI:186893709"
/db_xref="InterPro:IPR011761"
/db_xref="GeneID:6260891"
/translation="MKKNIWFMGGLSSQRDIISGVKNTSELHGNAIQVFASHHQHRYE
ILEKADVAFIEPSDLDTKMAFIRHIVKAFDIEAIHTGRSCLWFEQHRAAIEGLGVKLT
TGAQCPATFTLADNKVEYAAYMAQKGLPVVPSIQIASPDELREWLANPPFDTEKLCIK
PVTGIYGMGFWKLDQSISAMDCFDRTDNRVVHPDLYLAALERTEKMQPMVLMPYLPGP
ESSVDMLVEKGKVIAAVARRKEGSVQHLHQSGAAFELAKSSAELMQADGLVNVQTRCD
HHGQPLLLEINLRPSGGIGYTRHSGVNLPGLFALRQLDLMSQDEVSSQAVAHFKPVSV
RAMTDALPFPAELQNLTHF"
misc_feature complement(410844..411386)
/locus_tag="YPTS_0375"
/note="ATP-grasp domain; Region: ATP-grasp_4; pfam13535"
/db_xref="CDD:205713"
gene 411998..412591
/locus_tag="YPTS_0376"
/db_xref="GeneID:6260892"
CDS 411998..412591
/locus_tag="YPTS_0376"
/note="PFAM: stress protein;
KEGG: ypi:YpsIP31758_3789 tellurium resistance protein"
/codon_start=1
/transl_table=11
/product="stress protein"
/protein_id="YP_001870822.1"
/db_xref="GI:186893710"
/db_xref="InterPro:IPR003325"
/db_xref="GeneID:6260892"
/translation="MISLSKNQTISLAKESSALSRVQFGLGWDPVKKKKSFLGGLFGG
GSASDSIDLDASCVMLSQTGKPVDTVSFRHLTSKCRSVQHTGDNLTGEGDGDDEVINV
DLSRLPAEVEYLAFTVNSFRGQTFNEVENAFCRVVDQTGKELARYVLTEQGSHTGIVI
SSLRRNNGQWDFTAHGRACRGRTIEDMMSEIIETVVR"
misc_feature 411998..412570
/locus_tag="YPTS_0376"
/note="Uncharacterized proteins involved in stress
response, homologs of TerZ and putative cAMP-binding
protein CABP1 [Signal transduction mechanisms]; Region:
TerZ; COG2310"
/db_xref="CDD:32464"
misc_feature 412052..412543
/locus_tag="YPTS_0376"
/note="Uncharacterized proteins involved in stress
response, similar to tellurium resistance terD; Region:
TerD_like; cd06974"
/db_xref="CDD:132992"
misc_feature order(412151..412153,412157..412159,412289..412291)
/locus_tag="YPTS_0376"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:132992"
gene 412591..413775
/locus_tag="YPTS_0377"
/db_xref="GeneID:6260893"
CDS 412591..413775
/locus_tag="YPTS_0377"
/note="PFAM: stress protein;
KEGG: yps:YPTB0353 putative tellurite resistance protein"
/codon_start=1
/transl_table=11
/product="stress protein"
/protein_id="YP_001870823.1"
/db_xref="GI:186893711"
/db_xref="InterPro:IPR003325"
/db_xref="GeneID:6260893"
/translation="MNLMPGGNAPVASQTLTVRVLSGASVDVSAFRLYASGKVRGDTD
MVFYGQPVTDDSTIRLSGQGVNTAFSVNLQAINHDVQKIAFTATCDSNQTLSQLGNLS
IQVELNGSVLMKGDVETQGRQEAALILGELYRRNTEWKFRFVAQGFNGGLKPLAEHFG
VVVEDEPAAPTPVPTPVSTPAPTAPPVAKPINLSKVSLTKEKPVISLTKRDDFGEIRV
NLNWHRGGGAPAKGFLQGIFNSNKGIDLDLGAFVALNDGSRGVIQALGNNFGSYHSEP
YVQLQGDDRTGDVSDGEWMHINGREWKHVKEVLIFAFIYEGVPSWGSTDGIVTINVPG
QAPIETQMNEGNDRKNMCAVARLVNESGNIKVERINRYFSGHKEMDEAFGWGFRWKAG
SK"
misc_feature 412591..413070
/locus_tag="YPTS_0377"
/note="Uncharacterized proteins involved in stress
response, homologs of TerZ and putative cAMP-binding
protein CABP1 [Signal transduction mechanisms]; Region:
TerZ; COG2310"
/db_xref="CDD:32464"
misc_feature 412666..413070
/locus_tag="YPTS_0377"
/note="Uncharacterized proteins involved in stress
response, similar to tellurium resistance terD; Region:
TerD_like; cd06974"
/db_xref="CDD:132992"
misc_feature order(412669..412671,412789..412791)
/locus_tag="YPTS_0377"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:132992"
misc_feature 413161..413772
/locus_tag="YPTS_0377"
/note="Uncharacterized protein involved in stress response
[General function prediction only]; Region: COG4110"
/db_xref="CDD:33867"
misc_feature 413227..413742
/locus_tag="YPTS_0377"
/note="Uncharacterized proteins involved in stress
response, similar to tellurium resistance terD; Region:
TerD_like; cd06974"
/db_xref="CDD:132992"
misc_feature order(413323..413325,413329..413331,413467..413469)
/locus_tag="YPTS_0377"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:132992"
gene 413808..414263
/locus_tag="YPTS_0378"
/db_xref="GeneID:6260894"
CDS 413808..414263
/locus_tag="YPTS_0378"
/note="PFAM: Tellurite resistance TerB;
KEGG: ypi:YpsIP31758_3787 tellurite resistance protein"
/codon_start=1
/transl_table=11
/product="tellurite resistance TerB"
/protein_id="YP_001870824.1"
/db_xref="GI:186893712"
/db_xref="InterPro:IPR007791"
/db_xref="GeneID:6260894"
/translation="MSFFNKVKNAISAGRTELTNQVGRFKNRKFMEGTVAVCAHISMA
SNGAGPEEKQKMIMFIKQSPELSVFDTNEVIEFFNKLVTSYEFDADIGKGEAMKYIMA
LKSQPEAAQLALRVGIAVAKSDGVFDEMEEAAAREICVTLGFVPADFQL"
misc_feature 413895..414236
/locus_tag="YPTS_0378"
/note="tellurite resistance protein terB; Region: terB;
cd07176"
/db_xref="CDD:143580"
misc_feature order(413940..413942,413961..413963,414177..414179,
414198..414200)
/locus_tag="YPTS_0378"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:143580"
gene 414285..415322
/locus_tag="YPTS_0379"
/db_xref="GeneID:6260895"
CDS 414285..415322
/locus_tag="YPTS_0379"
/note="PFAM: Integral membrane protein TerC;
KEGG: yps:YPTB0355 tellurite resistance protein"
/codon_start=1
/transl_table=11
/product="integral membrane protein TerC"
/protein_id="YP_001870825.1"
/db_xref="GI:186893713"
/db_xref="InterPro:IPR005496"
/db_xref="GeneID:6260895"
/translation="MESTHIGFPIETVAVFILLSVGAICIDLFMHRHDKPISLKSAAL
WSLFWVAIAFVFAGFLYLHHGAEAASLFVTGYALEKVLSIDNLFVMMAIFSWFAVPDR
LRHRVLYWGIIGAIVFRGIFVAIGTGLLMLGPWVEVVFAIVVAWTAVMMLRKGDDDDA
IEDYSQHIAYRLVKRFFPIWPKLRGNAFILSQKEVDAELAKPENADVQVGRKGGVARY
ATPLMLCLAVVELSDVMFAFDSVPAVIAVSREPLIVYSAMMFAILGLRTLYFVLEALK
QYLVHLEKAVIVLLFFIAAKLGLNASDHFFNHGYDISANVSLFVVIGVLALGIVASFL
FPEKDSKEGQH"
misc_feature 414309..415298
/locus_tag="YPTS_0379"
/note="integral membrane protein, TerC family; Region:
R_switched_Alx; TIGR03718"
/db_xref="CDD:200316"
gene 415386..415964
/locus_tag="YPTS_0380"
/db_xref="GeneID:6260896"
CDS 415386..415964
/locus_tag="YPTS_0380"
/note="PFAM: stress protein;
KEGG: ypi:YpsIP31758_3785 tellurium resistance protein"
/codon_start=1
/transl_table=11
/product="stress protein"
/protein_id="YP_001870826.1"
/db_xref="GI:186893714"
/db_xref="InterPro:IPR003325"
/db_xref="GeneID:6260896"
/translation="MGVSLSKGGNVSLSKEAPTMTNVLIGLGWDARSTDGQDFDLDAS
AFLLTANGKVRNDADFIFYNNLKSSDGSVMHTGDNRTGEGEGDDESLKIKLPLIPADV
DKIVFVVTIHDAQARRQSFGQVANAFIRLVNDDNGVEIARYDLSEDASTETAMLFGEL
YRHNAEWKFRAVGQGYAGGLSSVCAQYGINAS"
misc_feature 415392..415949
/locus_tag="YPTS_0380"
/note="Uncharacterized proteins involved in stress
response, homologs of TerZ and putative cAMP-binding
protein CABP1 [Signal transduction mechanisms]; Region:
TerZ; COG2310"
/db_xref="CDD:32464"
misc_feature 415443..415949
/locus_tag="YPTS_0380"
/note="Uncharacterized proteins involved in stress
response, similar to tellurium resistance terD; Region:
TerD_like; cd06974"
/db_xref="CDD:132992"
misc_feature order(415503..415505,415509..415511,415650..415652)
/locus_tag="YPTS_0380"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:132992"
gene 416148..416723
/locus_tag="YPTS_0381"
/db_xref="GeneID:6260897"
CDS 416148..416723
/locus_tag="YPTS_0381"
/note="PFAM: stress protein;
KEGG: yps:YPTB0357 tellurium resistance protein"
/codon_start=1
/transl_table=11
/product="stress protein"
/protein_id="YP_001870827.1"
/db_xref="GI:186893715"
/db_xref="InterPro:IPR003325"
/db_xref="GeneID:6260897"
/translation="MAVSLVKGGNVSLTKEAPTMNIAVVGLGWDARVTDGSEFDLDAS
VFMVGENGKVLSDQHFIFFNNKVSPCGSVVHQGDNRTGAGDGDDEQIKIDLKKVPADV
KKIIFSVTIYDAEARKQNFGMVSNSFMRVVNEDNSAEIARFDLSEDASTETAMIFGEL
YRNNDEWKFKAVGQGFAGGLSALASQHGVSV"
misc_feature 416151..416711
/locus_tag="YPTS_0381"
/note="Uncharacterized proteins involved in stress
response, homologs of TerZ and putative cAMP-binding
protein CABP1 [Signal transduction mechanisms]; Region:
TerZ; COG2310"
/db_xref="CDD:32464"
misc_feature 416220..416711
/locus_tag="YPTS_0381"
/note="Uncharacterized proteins involved in stress
response, similar to tellurium resistance terD; Region:
TerD_like; cd06974"
/db_xref="CDD:132992"
misc_feature order(416265..416267,416271..416273,416412..416414)
/locus_tag="YPTS_0381"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:132992"
gene 417436..418074
/locus_tag="YPTS_0382"
/db_xref="GeneID:6260898"
CDS 417436..418074
/locus_tag="YPTS_0382"
/note="KEGG: ypi:YpsIP31758_3783 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870828.1"
/db_xref="GI:186893716"
/db_xref="GeneID:6260898"
/translation="MKKPLTQIAILSSLVVSISAASAAVPTAELKVVGTMTVPSCTVV
SPDAGIYDIGKLSSSLVKPGTTVTVLAQINKTWTVNCDANTYLNFTPVDNRVGSSSDG
SAAAFGLGKINDTGKIGYYTVQMRNATVDGKKSGVFTASSASFSQADTSYLNRGQRTG
WAAGANTQNSGKVFVADLLVTPVLAGTNTMNGAITEDAKIDGSLTMNFAFGI"
misc_feature 417523..>417720
/locus_tag="YPTS_0382"
/note="Protein of unknown function (DUF1120); Region:
DUF1120; cl05856"
/db_xref="CDD:195196"
gene 418325..420703
/locus_tag="YPTS_0383"
/db_xref="GeneID:6260899"
CDS 418325..420703
/locus_tag="YPTS_0383"
/note="PFAM: fimbrial biogenesis outer membrane usher
protein;
KEGG: yps:YPTB0359 putative outer membrane fimbrial usher
protein"
/codon_start=1
/transl_table=11
/product="fimbrial biogenesis outer membrane usher
protein"
/protein_id="YP_001870829.1"
/db_xref="GI:186893717"
/db_xref="InterPro:IPR000015"
/db_xref="InterPro:IPR002198"
/db_xref="GeneID:6260899"
/translation="MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYS
AELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATFDSEGKLCMDKALLMALKLRNTE
SDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF
GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESL
KSVVQLGEFGLVGNTFSGLPVTGIQLYSDDAQRDDTQLIVPIEGIANTNATIEIRQRG
RVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVTSALDINAEQQASIY
QLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGW
DQAWFSAAASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSS
NNLNDLMFGKLKNATSVAVSWVHPRWGAFSYALSNNMYYQASGRTYHIFSISEQFGRA
TTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGDNKDYSV
GISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSS
SVGDTFAVVNIPNQPGLRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLN
IRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSDGEMLPIGANVLDEKGNFLGT
IIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ"
misc_feature 418328..420700
/locus_tag="YPTS_0383"
/note="P pilus assembly protein, porin PapC [Cell motility
and secretion / Intracellular trafficking and secretion];
Region: FimD; COG3188"
/db_xref="CDD:33001"
misc_feature 418421..418810
/locus_tag="YPTS_0383"
/note="PapC N-terminal domain; Region: PapC_N; pfam13954"
/db_xref="CDD:206124"
misc_feature 418847..420421
/locus_tag="YPTS_0383"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:201318"
misc_feature 420464..420661
/locus_tag="YPTS_0383"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:206123"
gene 420775..421518
/locus_tag="YPTS_0384"
/db_xref="GeneID:6260900"
CDS 420775..421518
/locus_tag="YPTS_0384"
/note="member of the periplasmic pilus chaperone family of
proteins"
/codon_start=1
/transl_table=11
/product="putative periplasmic chaperone protein"
/protein_id="YP_001870830.1"
/db_xref="GI:186893718"
/db_xref="GeneID:6260900"
/translation="MQNFPTHHRDIGATIIYVNSVNRFNIFFVFTLLILLSSWSAVSY
ASFKLESTTVILQESEARTSFTIDNISSNPILLVTKLTDLDGKSFSKQILISPPVTRI
NAGQSQQVNFVLKKGSVLNNEVLLKASFEGVEQVPGNAAVMPIRQEIGFLIQPSAVPQ
IRMPWQTLVFSISGNNLVIKNPGKHVVRLGPQIILVPSNEVVALGNPYIMPETSKLFP
ITSSPTAVKVTPLSRYGFVQTEVTLPVTR"
misc_feature 420838..421515
/locus_tag="YPTS_0384"
/note="putative fimbrial chaperone protein; Provisional;
Region: PRK09918"
/db_xref="CDD:182144"
misc_feature 420910..421251
/locus_tag="YPTS_0384"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
gene 421529..421711
/locus_tag="YPTS_0385"
/db_xref="GeneID:6260901"
CDS 421529..421711
/locus_tag="YPTS_0385"
/note="KEGG: ypp:YPDSF_3666 membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870831.1"
/db_xref="GI:186893719"
/db_xref="GeneID:6260901"
/translation="MWGDHLYTEGGIFFPVVEIDMPQEFAGSARAIGCPIGYLPSLRL
QTLWLFSRYLPRDSRR"
gene 422975..424294
/locus_tag="YPTS_0386"
/db_xref="GeneID:6260902"
CDS 422975..424294
/locus_tag="YPTS_0386"
/note="KEGG: ypi:YpsIP31758_3779 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870832.1"
/db_xref="GI:186893720"
/db_xref="InterPro:IPR007087"
/db_xref="GeneID:6260902"
/translation="MMHTENNSPPGLIPLPDWYPVAFSHLDAMEYASVTRLWHHEPVL
RDLVDELDKRNPGLITFTHCPHCHSADICPGTRPEEYRCRTCHRCSSPYTHTPFFDLH
HARHSRLYAVLVTLWGTWQVEDAAWLSDCKSKQIWKQYCHRLKPILALIGGRAVTHTP
RYLRGFTPGQQGLHCPACASTQLVYSETMPVGNPEVHCQVCQTDFVMYPDIPKGIDPF
AVNTPQYDIPLPRWFSRLFSHASQAQYQHLREVWQREPVLREAVDRLDAQNPEQGAVY
ACPYCQNKHISPRKTASSIEGYYCPACDNPFTATTGTVFTRMRQEHFWRLYAVLVMLW
TQWRPTQIFELCQLRSVHPFLTYHKRLAPLLAEFDGAPITPYPRNLLGFTPGQQGVCC
VYCQSTKLITEGITVMPLDNPYICCLDCGQRFMLRVWRKQVKSSEKK"
gene 425303..427360
/locus_tag="YPTS_0387"
/db_xref="GeneID:6260903"
CDS 425303..427360
/locus_tag="YPTS_0387"
/note="PFAM: Carbohydrate-binding family V/XII;
Fibronectin type III domain protein; FAD linked oxidase
domain protein; Berberine/berberine domain protein;
KEGG: ypi:YpsIP31758_3776 putative oxidoreductase,
FAD-binding"
/codon_start=1
/transl_table=11
/product="berberine/berberine domain-containing protein"
/protein_id="YP_001870833.1"
/db_xref="GI:186893721"
/db_xref="InterPro:IPR003610"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR006094"
/db_xref="InterPro:IPR012951"
/db_xref="GeneID:6260903"
/translation="MKIIDKNVSTYETLQKGFNLRWPPNVEQGAETIYICTTPDEVFA
AANTALAAGNRITVRSGGHCYEGFVSNKLSTERLSIIDLGEMSGLDYDEDKTITSLWD
ANKNTYRFKSLTGNQNWNGYVSLYKRSGRTIPGGSCYSVGVGGHISGGGYGLLSRLHG
LTVDWVTGVDILVPVGNAHRLAFRHVRADSVSEVDRELFMACCGAGGGNFGIIIAYYF
DDLPKAPQKAYWIPLTYPWSSLKATFPAFLKAYWQWFADNDVNATSTKEGVGNGGLFT
LLKLNHIDASDNVVLAIQYTGPNGQVGGANDIPLNDFIEKMNAAAGMTPTIYDDFILP
NIPPFKHLYPGRKIGRTVDESASMDWLHVTQMINGSGSNQRGKYKSDYQIKQFSDEMC
HALLTHLTTATADKRFNQSLVQIDSYGGAINSRGIGATAVSQRNSLLKAQYQTYWTNE
ADDQTHLTWIRNIYAAVHNGKPAPPEFEGCYINYPDIDMKYTDSGEEDPNWLNLYYGW
DTQLIKRLIALKARIDPNNIFHHELSIPLVTELPKAPVNLHSTGQTTTSISLMWGSSI
GALPVASYAIYRDGHEVKLLNGTQTSAEDAGLQPNTEYRYFVAAGDEHGNLSVPSNVL
TVSTQGTHPAWVLNGSYAVGDVVSNLGKLWRCIQSHVAYDPLWAPGTNGGITLWAGYT
AGR"
misc_feature 425354..426916
/locus_tag="YPTS_0387"
/note="FAD/FMN-containing dehydrogenases [Energy
production and conversion]; Region: GlcD; COG0277"
/db_xref="CDD:30625"
misc_feature 426740..426910
/locus_tag="YPTS_0387"
/note="Berberine and berberine like; Region: BBE;
pfam08031"
/db_xref="CDD:116641"
misc_feature 426926..427357
/locus_tag="YPTS_0387"
/note="Uncharacterized protein contain chitin-binding
domain type 3 [General function prediction only]; Region:
COG3979"
/db_xref="CDD:33759"
misc_feature 426926..427186
/locus_tag="YPTS_0387"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature order(426926..426928,427100..427102,427145..427147)
/locus_tag="YPTS_0387"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature order(427148..427150,427154..427156,427160..427165)
/locus_tag="YPTS_0387"
/note="Cytokine receptor motif; other site"
/db_xref="CDD:28945"
misc_feature 427196..427297
/locus_tag="YPTS_0387"
/note="Carbohydrate binding domain; Region: CBM_5_12;
pfam02839"
/db_xref="CDD:202425"
gene complement(427704..431522)
/locus_tag="YPTS_0388"
/db_xref="GeneID:6260904"
CDS complement(427704..431522)
/locus_tag="YPTS_0388"
/note="TIGRFAM: outer membrane autotransporter barrel
domain protein;
PFAM: Autotransporter beta- domain protein;
KEGG: yps:YPTB0365 putative autotransporter protein"
/codon_start=1
/transl_table=11
/product="outer membrane autotransporter"
/protein_id="YP_001870834.1"
/db_xref="GI:186893722"
/db_xref="InterPro:IPR005546"
/db_xref="InterPro:IPR006315"
/db_xref="GeneID:6260904"
/translation="MHIQFREPISTSPAQPDAGRQHLFSRVPAAVMNPITLAIIVAFS
TLVLPQTAWAACNSSGVGTYVCEGENNTAISLFGTDIAVETRPGFGITEHEIMDSALS
LTGSGTISYLDTNSSALDTDSRYSLYIKNDTLITEQSASINVQSNGSISSGVYIDNQS
SDDSTIRVDLSGILSSSLSGAPALSIFSSAGNDSTIILNTHAISGVTGIQSDNNSQNG
ATITHVDVTGDINVENSGVSIRNAANGGTSIINFNSKSINTEYDSFYIQNTNYVGGVI
TDINIDGDISSANSQAARIYNYTNGGLASLRFRANNVTGSTGLYIDNSSQNGAVTDII
LTGDLTATSGSALQANAYSDEGNIETAIKLNNVYSLYDALNISDYTRSGNILHDLDIS
GTITAENGTGIKVMGAAGEGSSTMLINVNNITSSSQSLDINNYNFLGSAFSAITATGH
LTAEWGQGAMLQTHSSLGDATTLIHFNDITAMSSGISLINEANQGTSTTDITVTGQIN
VSHGEGITLNALTTDGRTLVNVDVNNIASEYDAIRLYNYNYNYNYNYNYNDNYATGVD
DGTGADNGTSTIDLITRGALVSQQGYGINIETNTADTYVTVGGLVHGGNGTAIGIHRL
DNIQTSATLELQSGYALEGVTQALVFNGSYAEINDAALDLANSHLVLGGTGDAAFDLT
RIDNREEAILDGDPNRITGFGTLTKTNNSIWTLTGANMADGDANAFLSANIAGGILVL
DNATLGLTPATTILNRLSAADIAADPTLVATETGALTLAEGGALSSLGDSVLSGNLIS
AGGILLSNTYTGGNGAATDDRLTVTGTYFGENNGSGEGAWLALDTVLGDDDSATDRLV
INGDATGTTSVRVNNAGGLGDKTLNGINLITVDGLAQDDTFLLAGDYVTTDGYQAVVA
GAYAYTLQADGEAATAGRNWYLSSELMLTEGVRYQVGVPLYEQYPQVLAALNTLPTLQ
QRVGNRYGAPGALADLNFDDNQWAWGRIEGSHQVTDPARSTSGSQREIDVWKLQTGID
VPLYQSQGGSLLTGGVNFTYGKAKADIHSFFGDGRINSAGYGLGTSLTWYGNNGVYVD
GQLQTMWFDSDLSSRTAGHAVASGNNGRGYTSAIEAGKGYALGNGLSLTPQMQVTYSR
VDFDTFRDPFDSEVSLQEGDSLRGRLGVSLDKETTWSAKDGTTRRSHIYSHLDLHNEF
LNGSKVQVSGVEFATRDERQSVGLGAGGTYEWQNGRYAVYGNVNLLGATRNVSDNYAV
GGTIGARVSW"
misc_feature complement(428700..429248)
/locus_tag="YPTS_0388"
/note="Pertactin-like passenger domains (virulence
factors), C-terminal, subgroup 2, of autotransporter
proteins of the type V secretion system of Gram-negative
bacteria. This subgroup includes the passenger domains of
the nonprotease autotransporters, Ag43; Region:
PL2_Passenger_AT; cd01344"
/db_xref="CDD:29329"
misc_feature complement(427707..429071)
/locus_tag="YPTS_0388"
/note="outer membrane autotransporter barrel domain;
Region: autotrans_barl; TIGR01414"
/db_xref="CDD:162346"
misc_feature complement(427779..428531)
/locus_tag="YPTS_0388"
/note="Autotransporter beta-domain; Region:
Autotransporter; smart00869"
/db_xref="CDD:197937"
gene 432354..432878
/gene="ubiC"
/locus_tag="YPTS_0389"
/db_xref="GeneID:6260905"
CDS 432354..432878
/gene="ubiC"
/locus_tag="YPTS_0389"
/note="catalyzes the formation of 4-hydroxybenzoate from
chorismate"
/codon_start=1
/transl_table=11
/product="chorismate pyruvate lyase"
/protein_id="YP_001870835.1"
/db_xref="GI:186893723"
/db_xref="InterPro:IPR007440"
/db_xref="GeneID:6260905"
/translation="MFIGDASILKPIQWCATEHPELPADIADWLMELGSMTRRFEQHC
QRVHVEPQRECFITRDALGEEAEHLPVSQRYWLREIVLFGDNVPWLLGRTVIPEETLS
GPDRALVDLGTLPLGRYLFSGDALTRDYIHVGRQDNLWARRSLLRLSGNPLLLTEVFL
PASPLYTHCDSIPK"
misc_feature 432354..432863
/gene="ubiC"
/locus_tag="YPTS_0389"
/note="chorismate pyruvate lyase; Provisional; Region:
ubiC; PRK11655"
/db_xref="CDD:183261"
gene 433044..433910
/gene="ubiA"
/locus_tag="YPTS_0390"
/db_xref="GeneID:6260906"
CDS 433044..433910
/gene="ubiA"
/locus_tag="YPTS_0390"
/note="catalyzes the conversion of 4-Hydroxybenzoate into
3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone
biosynthesis pathway"
/codon_start=1
/transl_table=11
/product="4-hydroxybenzoate octaprenyltransferase"
/protein_id="YP_001870836.1"
/db_xref="GI:186893724"
/db_xref="InterPro:IPR000537"
/db_xref="InterPro:IPR006370"
/db_xref="GeneID:6260906"
/translation="MKGSTVHTKWQAYCRLMRIDKPIGSLLLLWPTLWALWLAGRGIP
EAKILVVFVLGVFFMRAAGCVVNDYADRHIDSFVKRTASRPLPSGTISEKESKILFVV
LILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAA
VSESLPLVCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDKLIIGLL
QLATLLLMVAIGWLMNLGGAFYWSILLAGALFTHQQKMIAQREREPCFRAFLNNNYVG
LVLFLGILISYW"
misc_feature 433062..433904
/gene="ubiA"
/locus_tag="YPTS_0390"
/note="4-hydroxybenzoate octaprenyltransferase; Reviewed;
Region: ubiA; PRK12848"
/db_xref="CDD:183790"
gene complement(434091..436586)
/locus_tag="YPTS_0391"
/db_xref="GeneID:6260907"
CDS complement(434091..436586)
/locus_tag="YPTS_0391"
/EC_number="2.3.1.15"
/note="PlsB; catalyzes the formation of 1-acyl-sn-glycerol
3-phosphate by transfering the acyl moiety from acyl-CoA"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate acyltransferase"
/protein_id="YP_001870837.1"
/db_xref="GI:186893725"
/db_xref="InterPro:IPR002123"
/db_xref="GeneID:6260907"
/translation="MSGWRKIYYKLLNLPLKLLVKSKVIPADPVSELGLDPSRPILYV
LPYNSKADLLTLRAQCLAQDLPDPLIPLEIDGVQLPSHVFIENGPRVFRYYVPKQESV
KLFHDYLDLHRNNPALDIQMLPVSVMFGRSPGREGHGTPHLRVLNGVQKFFAVLWLGR
DSFVRFSTTVSLRRMASEHGTDKTIAHKLARVARMHFSRQRLAAVGPSLPARQDLFKK
LLASKAIEKAVADEARSKKISHEKAQQNAITLMEEIAANFSYEAVRLSDRVLSWTWNR
LYQGINVHNAERVRQLAQDGHEIVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINL
NFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFTRGYSVEYFVEGGRSRTGR
LLEPKTGTLSMTIQAMLRGGTRPITLVPIYIGYEHVMEVGTYAKELRGAIKEKENLLQ
MLRGLRKLRNLGQGYVNFGEPLPLTTYLNTHVPQWRDAIDPIEAQRPSWLTPAVNDLA
NQIMVRINNAAAANAMNLCSTALLASRQRSLTREQLLEQLDCYLQLMRNAPYAKDTTV
PDKTPEELLNHALNMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIQHLLILPSLIAS
MVMYHRRITRTELLHKISMIYPMLKAELFLHYSKEQLPETLDTLIDELARQQLICDKG
SELVLNPARIRPLQLLAAGVRETLQRYAITLSLLSATPSINRGALEKESRIMAQRLSV
LHGINAPEFFDKAVFSTLVATLREEGYISDSGDAIQEHTLEVYNMLSALMTPEVKLTI
ESVSMPAETSNQPEAPETPETPETPEPEGKTES"
misc_feature complement(434193..436508)
/locus_tag="YPTS_0391"
/note="glycerol-3-phosphate O-acyltransferase; Region:
plsB; TIGR03703"
/db_xref="CDD:163415"
misc_feature complement(435150..435755)
/locus_tag="YPTS_0391"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: GPAT-like; Region:
LPLAT_DHAPAT-like; cd07993"
/db_xref="CDD:153255"
misc_feature complement(order(435426..435434,435585..435596,
435657..435659,435663..435665,435672..435674))
/locus_tag="YPTS_0391"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153255"
gene 436714..437085
/locus_tag="YPTS_0392"
/db_xref="GeneID:6260908"
CDS 436714..437085
/locus_tag="YPTS_0392"
/note="PFAM: diacylglycerol kinase;
KEGG: ypi:YpsIP31758_3771 diacylglycerol kinase"
/codon_start=1
/transl_table=11
/product="diacylglycerol kinase"
/protein_id="YP_001870838.1"
/db_xref="GI:186893726"
/db_xref="InterPro:IPR000829"
/db_xref="GeneID:6260908"
/translation="MANQSTGLTRIYKAAGYTVKGLTAAWNNEAAFRQESVAAVIAII
LAFWLDVGAIARILLICSVVLVLIVEVINSAIEAVVDRIGSEFHALSGRAKDMGSAAV
FLTILMALFVWITVLWQHVAR"
misc_feature 436714..437082
/locus_tag="YPTS_0392"
/note="Diacylglycerol kinase [Cell envelope biogenesis,
outer membrane]; Region: DgkA; COG0818"
/db_xref="CDD:31160"
gene 437210..437818
/locus_tag="YPTS_0393"
/db_xref="GeneID:6260909"
CDS 437210..437818
/locus_tag="YPTS_0393"
/EC_number="3.4.21.88"
/note="Represses a number of genes involved in the
response to DNA damage"
/codon_start=1
/transl_table=11
/product="LexA repressor"
/protein_id="YP_001870839.1"
/db_xref="GI:186893727"
/db_xref="InterPro:IPR006197"
/db_xref="InterPro:IPR006199"
/db_xref="InterPro:IPR006200"
/db_xref="InterPro:IPR011056"
/db_xref="GeneID:6260909"
/translation="MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGFRSPNAAE
EHLKALARKGVIEIVSGASRGIRLLMEEEEGLPLIGRVAAGEPLLAQQHIEGHYKVDP
SLFKPGADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK
QGNIVHLLPENSEFQPIVVDLREQSFTIEGLAVGVIRNGDWI"
misc_feature 437216..437806
/locus_tag="YPTS_0393"
/note="LexA repressor; Validated; Region: PRK00215"
/db_xref="CDD:178931"
misc_feature 437216..437404
/locus_tag="YPTS_0393"
/note="LexA DNA binding domain; Region: LexA_DNA_bind;
pfam01726"
/db_xref="CDD:201938"
misc_feature 437540..437758
/locus_tag="YPTS_0393"
/note="Peptidase S24 LexA-like proteins are involved in
the SOS response leading to the repair of single-stranded
DNA within the bacterial cell. This family includes: the
lambda repressor CI/C2 family and related bacterial
prophage repressor proteins; LexA (EC...; Region:
S24_LexA-like; cd06529"
/db_xref="CDD:119397"
misc_feature order(437564..437566,437675..437677)
/locus_tag="YPTS_0393"
/note="Catalytic site [active]"
/db_xref="CDD:119397"
gene complement(438013..438525)
/locus_tag="YPTS_0394"
/db_xref="GeneID:6260910"
CDS complement(438013..438525)
/locus_tag="YPTS_0394"
/note="Acts as a negative controlling element, employing
Zn(2+) as a cofactor to bind the operator of the repressed
genes znuACB"
/codon_start=1
/transl_table=11
/product="zinc uptake transcriptional repressor"
/protein_id="YP_001870840.1"
/db_xref="GI:186893728"
/db_xref="InterPro:IPR002481"
/db_xref="GeneID:6260910"
/translation="MMNPINQEKLLAQAESLCQQRNVRLTPQRLEVLRLMAQQPGAIS
AYDLLDLLRVAEPQAKPPTVYRALDFLLEQGFIHRVESANSYVLCHHFEEPTHTSALF
ICDRCKIVTERPTVGIEEALAQLAKQSGFTLRHSVVEAHGLCTECGVVEACESHDDCE
HDHSIVVKKK"
misc_feature complement(438094..438447)
/locus_tag="YPTS_0394"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(438190..438192,438223..438225,
438235..438237,438256..438258,438400..438402))
/locus_tag="YPTS_0394"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(438304..438348)
/locus_tag="YPTS_0394"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(438118..438120,438169..438171,
438226..438228,438238..438240))
/locus_tag="YPTS_0394"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(438097..438123,438127..438135,
438160..438165,438211..438219))
/locus_tag="YPTS_0394"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(438094..438096,438205..438207,
438214..438216))
/locus_tag="YPTS_0394"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 438777..439814
/locus_tag="YPTS_0395"
/db_xref="GeneID:6260911"
CDS 438777..439814
/locus_tag="YPTS_0395"
/note="TIGRFAM: TIM-barrel protein, yjbN family;
PFAM: dihydrouridine synthase DuS;
KEGG: yps:YPTB0372 tRNA-dihydrouridine synthase A"
/codon_start=1
/transl_table=11
/product="tRNA-dihydrouridine synthase A"
/protein_id="YP_001870841.1"
/db_xref="GI:186893729"
/db_xref="InterPro:IPR001269"
/db_xref="InterPro:IPR004653"
/db_xref="GeneID:6260911"
/translation="MHEAQTFSSTPATKPQYPLQRFSVAPMLDWTDRHCRYFHRLLTK
QALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQALAHCAKLAEQRGYNEI
NLNVGCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEF
LCEFVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQLKRDFPALTIA
INGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQVDRELFDPHAPVVDSVKAIEAL
YPYIEQELSQGAYLGHITRHILGIFQGIPGARQWRRHLSENAHKPGAGVSVVEEALAL
VSPSYYESVGG"
misc_feature 438804..439787
/locus_tag="YPTS_0395"
/note="tRNA-dihydrouridine synthase A; Provisional;
Region: PRK11815"
/db_xref="CDD:183323"
misc_feature 438837..439556
/locus_tag="YPTS_0395"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:73368"
misc_feature order(438849..438857,438930..438932,439008..439010,
439089..439091,439215..439217,439314..439316,
439434..439436,439440..439442,439500..439505)
/locus_tag="YPTS_0395"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73368"
misc_feature order(439008..439010,439098..439103,439215..439217,
439221..439223,439311..439316,439320..439325,
439437..439442,439503..439505)
/locus_tag="YPTS_0395"
/note="active site"
/db_xref="CDD:73368"
misc_feature order(439098..439100,439221..439223,439314..439316,
439320..439322)
/locus_tag="YPTS_0395"
/note="catalytic residues [active]"
/db_xref="CDD:73368"
misc_feature order(439101..439103,439215..439217,439311..439313,
439323..439325,439437..439442)
/locus_tag="YPTS_0395"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73368"
gene 440330..440548
/gene="pspG"
/locus_tag="YPTS_0396"
/db_xref="GeneID:6260912"
CDS 440330..440548
/gene="pspG"
/locus_tag="YPTS_0396"
/note="coordinately regulated along with pspA;
PspF-dependent induction in response to secretin
overexpression in Yersinia"
/codon_start=1
/transl_table=11
/product="phage shock protein G"
/protein_id="YP_001870842.1"
/db_xref="GI:186893730"
/db_xref="InterPro:IPR014318"
/db_xref="GeneID:6260912"
/translation="MLEIFFVIGFFMVLMVTGISLLGILAALLVAAVFMMLGGLFVMM
IKLLPWLILAVVVAWIWRSMQKPVIRRY"
misc_feature 440330..440545
/gene="pspG"
/locus_tag="YPTS_0396"
/note="phage shock protein G; Reviewed; Region: pspG;
PRK09459"
/db_xref="CDD:181875"
gene complement(440893..441876)
/locus_tag="YPTS_0397"
/db_xref="GeneID:6260913"
CDS complement(440893..441876)
/locus_tag="YPTS_0397"
/note="PFAM: Alcohol dehydrogenase zinc-binding domain
protein; Alcohol dehydrogenase GroES domain protein;
KEGG: yps:YPTB0374 quinone oxidoreductase,
NADPH-dependent"
/codon_start=1
/transl_table=11
/product="NADPH-dependent quinone oxidoreductase"
/protein_id="YP_001870843.1"
/db_xref="GI:186893731"
/db_xref="InterPro:IPR002364"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="GeneID:6260913"
/translation="MAKHIQFTTTGGPDVLQYLEFTPSDPAPHEVQVENKAIGINYID
TYVRSGLYPPAHLPSGLGTEAAGIVSKVGAAVSSVKVGDRVVYAQSALGAYSEVHNVP
ADKIALLPEQISFEQAAASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQW
AKALGAKLIGTVGSDEKAQLAKAAGAWATINYRTENIAQRVAELTEGEKVGVVYDSVG
KSTWEASLDSLKRRGLLVSFGNASGPVTGVNLGILNQKGGIYVTRPSLNVYVANRQEL
ESASQQLFSMITSGAINVDVAQAQQFPLCDAQRAHETLEGRQTTGSSLLIP"
misc_feature complement(440896..441876)
/locus_tag="YPTS_0397"
/note="quinone oxidoreductase, NADPH-dependent;
Provisional; Region: PRK10754"
/db_xref="CDD:182701"
misc_feature complement(440896..441870)
/locus_tag="YPTS_0397"
/note="Quinone oxidoreductase (QOR); Region: QOR2;
cd05286"
/db_xref="CDD:176189"
misc_feature complement(order(440926..440928,440932..440934,
441079..441090,441151..441165,441226..441231,
441301..441303,441346..441348,441358..441363,
441418..441426,441433..441435,441487..441489,
441496..441498,441508..441510,441739..441741,
441751..441756))
/locus_tag="YPTS_0397"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:176189"
misc_feature complement(order(441070..441075,441082..441105,
441127..441144,441181..441186,441472..441474))
/locus_tag="YPTS_0397"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176189"
gene 442259..443614
/locus_tag="YPTS_0398"
/db_xref="GeneID:6260914"
CDS 442259..443614
/locus_tag="YPTS_0398"
/note="unwinds double stranded DNA"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="YP_001870844.1"
/db_xref="GI:186893732"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR007692"
/db_xref="InterPro:IPR007693"
/db_xref="InterPro:IPR007694"
/db_xref="GeneID:6260914"
/translation="MEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRP
HRRIFTEMQRLLENSKPIDLITLSESLEQKGDLDSVGGFAYLAELSKNTPSAANIGAY
ADIVRERAVVREMISVANEIADAGYDPQGRSSEDLLDLAESKVFQIAESRASKDEGPK
SVDRILEDTVARIEQLYQRPHDGVTGVSTGFTDLDKKTAGLQKSDLIIVAARPSMGKT
TFAMNLCENAAMMQDKPVLIFSLEMPGDQIMMRMLASLSHVDQTRIRTGQLDDEDWAR
ISSTMGILMEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLS
DNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDA
DLIMFIYRDEVYHENSDEKGIAQIILGKQRNGPIGSVRLKFNGQWSRFDNYAGPQYDD
E"
misc_feature 442259..443611
/locus_tag="YPTS_0398"
/note="replicative DNA helicase; Provisional; Region:
PRK08006"
/db_xref="CDD:181193"
misc_feature 442277..442582
/locus_tag="YPTS_0398"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:201435"
misc_feature 442832..443563
/locus_tag="YPTS_0398"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:29985"
misc_feature 442892..442912
/locus_tag="YPTS_0398"
/note="Walker A motif; other site"
/db_xref="CDD:29985"
misc_feature order(442907..442912,443225..443227,443348..443350,
443456..443458,443522..443524,443555..443557)
/locus_tag="YPTS_0398"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29985"
misc_feature 443216..443227
/locus_tag="YPTS_0398"
/note="Walker B motif; other site"
/db_xref="CDD:29985"
misc_feature order(443240..443245,443264..443272,443345..443371,
443453..443458,443492..443497)
/locus_tag="YPTS_0398"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:29985"
gene 443711..444790
/gene="alr"
/locus_tag="YPTS_0399"
/db_xref="GeneID:6260915"
CDS 443711..444790
/gene="alr"
/locus_tag="YPTS_0399"
/EC_number="5.1.1.1"
/note="converts L-alanine to D-alanine which is used in
cell wall biosynthesis; binds one pyridoxal phosphate per
monomer; forms a homodimer"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_001870845.1"
/db_xref="GI:186893733"
/db_xref="InterPro:IPR000821"
/db_xref="InterPro:IPR001608"
/db_xref="InterPro:IPR011079"
/db_xref="GeneID:6260915"
/translation="MKAATAVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLA
AAHTLQDADCYGVARISEALMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSL
EQLVALEAATLSAPINAWMKLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHF
SRADEPEVAATQQQLACFDAFAAGKPGKQSIAASGGILRWPQAHRDWVRPGIVLYGVS
PFDTPYGRDFGLLPAMTLKSSLIAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDG
YPRSAPSGTPVWLNGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVA
ACTGISAYELITNLTSRVAMEYLGE"
misc_feature 443711..444781
/gene="alr"
/locus_tag="YPTS_0399"
/note="alanine racemase; Reviewed; Region: alr; PRK00053"
/db_xref="CDD:178827"
misc_feature 443717..444778
/gene="alr"
/locus_tag="YPTS_0399"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzymes, Proteobacterial Alanine Racemases; Region:
PLPDE_III_AR_proteobact; cd06827"
/db_xref="CDD:143500"
misc_feature order(443804..443806,443810..443812,443822..443824,
443942..443944,444074..444076,444095..444097,
444179..444181,444185..444187,444287..444295,
444335..444346,444734..444736)
/gene="alr"
/locus_tag="YPTS_0399"
/note="active site"
/db_xref="CDD:143500"
misc_feature order(443804..443806,443810..443812,443822..443824,
443942..443944,444185..444187,444287..444292,
444335..444337,444341..444346,444734..444736)
/gene="alr"
/locus_tag="YPTS_0399"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143500"
misc_feature order(443810..443812,443822..443824,444095..444097,
444185..444187,444734..444736)
/gene="alr"
/locus_tag="YPTS_0399"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143500"
misc_feature order(443810..443812,444470..444472)
/gene="alr"
/locus_tag="YPTS_0399"
/note="catalytic residues [active]"
/db_xref="CDD:143500"
misc_feature order(444431..444433,444440..444442,444458..444463,
444467..444475,444512..444514,444527..444529,
444545..444547,444611..444613,444617..444619,
444728..444730,444734..444739,444752..444754,
444761..444763)
/gene="alr"
/locus_tag="YPTS_0399"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143500"
gene 444976..446169
/locus_tag="YPTS_0400"
/db_xref="GeneID:6260916"
CDS 444976..446169
/locus_tag="YPTS_0400"
/EC_number="2.6.1.57"
/note="catalyzes the formation of L-glutamate and an
aromatic oxo acid from an aromatic amino acid and
2-oxoglutarate"
/codon_start=1
/transl_table=11
/product="aromatic amino acid aminotransferase"
/protein_id="YP_001870846.1"
/db_xref="GI:186893734"
/db_xref="InterPro:IPR000796"
/db_xref="InterPro:IPR004838"
/db_xref="InterPro:IPR004839"
/db_xref="GeneID:6260916"
/translation="MFQNVDAYAGDPILSLMESFKADNRAHKVNLSIGLYYNEQGEIP
QMQAVDAAEAQLSAQPHGTPVYLPMEGLQSYRTAIQQLLFGHDHPMLVQQRVATIQTV
GGSGALKVGADFLNHYFPDSQVWVSDPTWENHVAIFSGAGFKVNTYPYFDNDKLAVKF
DPMLATLQQLPARSIVLLHPCCHNPTGSDLTNAQWDRLIDVVKERELIPFLDIAYQGF
GAGLNEDAYAIRAMAAAGLPCLISNSFSKIFSLYNERVGGLSVVCESDEAAGRVLGQL
KATVRRNYSSPPNFGAQVVSKVLNDTVLRAQWQAEVEQMRLRILDMRHTLVEALKASL
PERNFDYLLQQRGMFSYTGFSEAQVDRLREEFGVYLIASGRMCMAGVNHQNVEQVAVA
FAAVQ"
misc_feature 444976..446124
/locus_tag="YPTS_0400"
/note="aromatic amino acid aminotransferase; Provisional;
Region: PRK09257"
/db_xref="CDD:181731"
misc_feature 445060..446124
/locus_tag="YPTS_0400"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature order(445282..445290,445366..445368,445525..445527,
445618..445620,445705..445707,445711..445716,
445738..445740)
/locus_tag="YPTS_0400"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature order(445291..445293,445396..445398,445597..445599,
445732..445740,445846..445848,445855..445857)
/locus_tag="YPTS_0400"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature 445714..445716
/locus_tag="YPTS_0400"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 446696..447055
/locus_tag="YPTS_0401"
/db_xref="GeneID:6260917"
CDS 446696..447055
/locus_tag="YPTS_0401"
/note="PFAM: protein of unknown function DUF419;
KEGG: ypi:YpsIP31758_3762 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870847.1"
/db_xref="GI:186893735"
/db_xref="InterPro:IPR007351"
/db_xref="GeneID:6260917"
/translation="MNHSALLEYCLSKPGAEQCEHEQWQTNQIKVADVMFAMVGNIGG
RPSISLKSSPKLAERLREQHPEIVPSEHLNKTHWNTVFLDGKLPNSQFYTLIDHSYQL
VLQGLPEQRRQDLSSHL"
misc_feature 446696..447049
/locus_tag="YPTS_0401"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: MmcQ; COG2315"
/db_xref="CDD:32469"
gene complement(447148..449991)
/gene="uvrA"
/locus_tag="YPTS_0402"
/db_xref="GeneID:6260918"
CDS complement(447148..449991)
/gene="uvrA"
/locus_tag="YPTS_0402"
/note="The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. UvrA is an ATPase and a
DNA-binding protein. A damage recognition complex composed
of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities.
When the presence of a lesion has been verified by uvrB,
the uvrA molecules dissociate"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit A"
/protein_id="YP_001870848.1"
/db_xref="GI:186893736"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR004602"
/db_xref="GeneID:6260918"
/translation="MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDT
LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKG
EHTKILENLAAQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLA
ESFETALALSGGTAVVADMDDPHVEELLFSANFACPICGYSMRELEPRLFSFNNPAGA
CPTCDGLGVQQFFDPDRVLQNPELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIEA
PFNSLDSAVQQAVLYGSGKDTIEFKYINDRGDTTVRRHPFEGVLHNMERRYKETESSA
VREELAKFISNRSCASCSGTRLRREARYVFVENTTLPEISELSIGHALSFFQNMKLSG
QRAQIAEKILKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGV
MYVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGV
HGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAIPEKRVSADPSKVLKLIGATGNNLK
DVTLTLPVGLFSCITGVSGSGKSTLINDTLYSIAQRQLNGATITEPAPYREIQGLEHF
DKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPESRTRGYTPGRFSFNVKGGRC
EACQGDGVIKVEMHFLPDIYVPCDHCKGKRYNRETLEIKYKGKSIHEVLAMTIEEARE
FFDAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKLSRELSKRGTGQTLYIL
DEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE
ILVSGTPETVAECAASHTARFLKPMLQRKPQTV"
misc_feature complement(447166..449991)
/gene="uvrA"
/locus_tag="YPTS_0402"
/note="excinuclease ABC subunit A; Reviewed; Region: uvrA;
PRK00349"
/db_xref="CDD:178984"
misc_feature complement(<449644..449982)
/gene="uvrA"
/locus_tag="YPTS_0402"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature complement(448312..>448605)
/gene="uvrA"
/locus_tag="YPTS_0402"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature complement(447283..448155)
/gene="uvrA"
/locus_tag="YPTS_0402"
/note="The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_II; cd03271"
/db_xref="CDD:73030"
gene 450697..451245
/locus_tag="YPTS_0403"
/db_xref="GeneID:6260919"
CDS 450697..451245
/locus_tag="YPTS_0403"
/note="binds to single stranded DNA and PriA helcase
facilitate replication restart"
/codon_start=1
/transl_table=11
/product="single-stranded DNA-binding protein"
/protein_id="YP_001870849.1"
/db_xref="GI:186893737"
/db_xref="InterPro:IPR000424"
/db_xref="InterPro:IPR011344"
/db_xref="GeneID:6260919"
/translation="MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK
QTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGALQTRKWQDQSGQERYTTEV
VVNVGGTMQMLGGRQGGGAPAGGGAAPQDGGAQGGWGQPQQPQGGNQFSGGQASRPAQ
PAPAAPQGGNEPPMDFDDDIPF"
misc_feature 450709..>451014
/locus_tag="YPTS_0403"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:30974"
misc_feature 450721..451011
/locus_tag="YPTS_0403"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:72968"
misc_feature order(450721..450732,450805..450813,450856..450858,
450862..450864,450925..450927,450952..450954,
450985..450987,450994..450996)
/locus_tag="YPTS_0403"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:72968"
misc_feature order(450736..450744,450760..450762,450790..450792,
450811..450816,450850..450855,450859..450861,
450865..450867,450871..450873,450877..450879,
450916..450921,450943..450945,450949..450951,
450955..450960,450997..450999,451003..451005)
/locus_tag="YPTS_0403"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:72968"
misc_feature order(450925..450927,450931..450933,450937..450939)
/locus_tag="YPTS_0403"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:72968"
misc_feature <451204..451242
/locus_tag="YPTS_0403"
/note="Replication protein A, class 2b aminoacyl-tRNA
synthetases, and related proteins with
oligonucleotide/oligosaccharide (OB) fold; Region:
RPA_2b-aaRSs_OBF_like; cl09930"
/db_xref="CDD:209097"
gene complement(451493..451807)
/locus_tag="YPTS_0404"
/db_xref="GeneID:6260920"
CDS complement(451493..451807)
/locus_tag="YPTS_0404"
/note="TIGRFAM: L-rhamnose 1-epimerase;
PFAM: protein of unknown function DUF718;
KEGG: ypi:YpsIP31758_3759 L-rhamnose 1-epimerase"
/codon_start=1
/transl_table=11
/product="L-rhamnose 1-epimerase"
/protein_id="YP_001870850.1"
/db_xref="GI:186893738"
/db_xref="InterPro:IPR008000"
/db_xref="InterPro:IPR013448"
/db_xref="GeneID:6260920"
/translation="MIRKAFVMAVNPDAHAEYQRRHTPIWPELESVLKAHGAHHYSIF
LDETRNLLFGVVEIESEERWNAVAQTAECQRWWQHMADVMPSHPDNSPVSQALREVFY
LE"
misc_feature complement(451496..451801)
/locus_tag="YPTS_0404"
/note="L-rhamnose 1-epimerase; Region: YiiL_rotase;
TIGR02625"
/db_xref="CDD:131674"
gene complement(451821..452969)
/locus_tag="YPTS_0405"
/db_xref="GeneID:6260921"
CDS complement(451821..452969)
/locus_tag="YPTS_0405"
/note="TIGRFAM: lactaldehyde reductase;
PFAM: iron-containing alcohol dehydrogenase;
KEGG: ypi:YpsIP31758_3758 lactaldehyde reductase"
/codon_start=1
/transl_table=11
/product="lactaldehyde reductase"
/protein_id="YP_001870851.1"
/db_xref="GI:186893739"
/db_xref="InterPro:IPR001670"
/db_xref="InterPro:IPR013460"
/db_xref="GeneID:6260921"
/translation="MSFMLALPKISLHGTGAIGDMVKLLSDKQWGKALIVTDGQLVEL
GLLDSLFAALAQYQLPYGLFGEVFPNPTEELVQAGFAAFTQHQCDYLIAFGGGSPIDT
AKAIKILTANPGPSTAYSGVGKVKQTGVPLIAINTTAGTAAELTSNAVIIDSQRQVKE
VIIDTNLIPDIAVDDPSVMLNIPASVTAATGMDALTHAIEAYVSLGAHTLTDHSALES
IRLISQWLPLAVADGKNLQAREMMACGQYLAGMAFNSAGLGLVHALAHQPGATHNLPH
GVCNAILLPVIEEYNRPQATRRFARIAQAMGVDTQDMSDEQASHQAIAAIRQLSLQVG
IPAGFSALGIEESDIEGWLDKALADPCAPCNPRSADREQIRTLYLQAL"
misc_feature complement(451836..452966)
/locus_tag="YPTS_0405"
/note="lactaldehyde reductase; Region: lactal_redase;
TIGR02638"
/db_xref="CDD:131686"
misc_feature complement(451836..452963)
/locus_tag="YPTS_0405"
/note="Lactadehyde:propanediol oxidoreductase (LPO)
catalyzes the interconversion between L-lactaldehyde and
L-1,2-propanediol in Escherichia coli and other
enterobacteria; Region: LPO; cd08176"
/db_xref="CDD:173935"
misc_feature complement(order(452238..452240,452331..452333,
452460..452462,452931..452945))
/locus_tag="YPTS_0405"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173935"
misc_feature complement(order(452142..452144,452184..452186,
452379..452381,452391..452393,452412..452414,
452436..452438,452493..452495,452520..452522,
452547..452549,452556..452561,452676..452684,
452856..452858))
/locus_tag="YPTS_0405"
/note="active site"
/db_xref="CDD:173935"
misc_feature complement(order(452142..452144,452184..452186,
452379..452381,452391..452393))
/locus_tag="YPTS_0405"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173935"
gene complement(453036..453860)
/locus_tag="YPTS_0406"
/db_xref="GeneID:6260922"
CDS complement(453036..453860)
/locus_tag="YPTS_0406"
/EC_number="4.1.2.19"
/note="TIGRFAM: rhamnulose-1-phosphate aldolase;
PFAM: class II aldolase/adducin family protein;
KEGG: ypg:YpAngola_A0745 rhamnulose-1-phosphate aldolase"
/codon_start=1
/transl_table=11
/product="rhamnulose-1-phosphate aldolase"
/protein_id="YP_001870852.1"
/db_xref="GI:186893740"
/db_xref="InterPro:IPR001303"
/db_xref="InterPro:IPR013447"
/db_xref="GeneID:6260922"
/translation="MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEP
YRRDFYQHPRKVELTQPAPELANSWFLVTGSGKFFRNVELNPAENLVLLQVSNDGMAY
HIHWGLTQGGLPTSELAAHFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENAS
FTRLLWEGSTECLVVFPDGIGIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSG
PTLDDAFGLIDTAEKSAEIMVKVLSMGGKKQTISREQLIALAARFDVTPMAAALDA"
misc_feature complement(453069..453842)
/locus_tag="YPTS_0406"
/note="Class II Aldolase and Adducin head (N-terminal)
domain. Aldolases are ubiquitous enzymes catalyzing
central steps of carbohydrate metabolism. Based on
enzymatic mechanisms, this superfamily has been divided
into two distinct classes (Class I and II); Region:
Aldolase_II; cd00398"
/db_xref="CDD:29521"
misc_feature complement(order(453081..453083,453141..453143,
453162..453164,453174..453176,453195..453197,
453228..453230,453306..453308,453348..453353,
453357..453359,453402..453410,453423..453428,
453432..453434,453618..453623,453627..453629,
453780..453782,453804..453806,453816..453818))
/locus_tag="YPTS_0406"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29521"
misc_feature complement(order(453225..453227,453432..453434,
453438..453440,453510..453518,453633..453638,
453765..453767))
/locus_tag="YPTS_0406"
/note="active site"
/db_xref="CDD:29521"
misc_feature complement(order(453225..453227,453432..453434,
453438..453440))
/locus_tag="YPTS_0406"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:29521"
gene complement(453873..455129)
/locus_tag="YPTS_0407"
/db_xref="GeneID:6260923"
CDS complement(453873..455129)
/locus_tag="YPTS_0407"
/EC_number="5.3.1.14"
/note="catalyzes the formation of L-rhamnulose from
L-rhamnose"
/codon_start=1
/transl_table=11
/product="L-rhamnose isomerase"
/protein_id="YP_001870853.1"
/db_xref="GI:186893741"
/db_xref="InterPro:IPR009308"
/db_xref="GeneID:6260923"
/translation="MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDD
VTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESD
TSVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIE
HCQASRRISAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNP
AHHIDAVESKLFGIGAESYTVGSNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSA
MLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDRVHIGLDFFDASINR
IAAWVIGTRNMKKALLRALLEPTDMLRQLELRGDYTARLALLEEQKSLPWQAIWEGYC
QRNDVPVDARWLDAVREYEQQILSQR"
misc_feature complement(453876..455129)
/locus_tag="YPTS_0407"
/note="L-rhamnose isomerase; Provisional; Region:
PRK01076"
/db_xref="CDD:179217"
misc_feature complement(<454281..455090)
/locus_tag="YPTS_0407"
/note="Xylose isomerase [Carbohydrate transport and
metabolism]; Region: XylA; cl09945"
/db_xref="CDD:213118"
gene complement(455126..456544)
/gene="rhaB"
/locus_tag="YPTS_0408"
/db_xref="GeneID:6260924"
CDS complement(455126..456544)
/gene="rhaB"
/locus_tag="YPTS_0408"
/note="catalyzes the ATP-dependent phosphorylation of
rhamnulose"
/codon_start=1
/transl_table=11
/product="rhamnulokinase"
/protein_id="YP_001870854.1"
/db_xref="GI:186893742"
/db_xref="InterPro:IPR000577"
/db_xref="InterPro:IPR013449"
/db_xref="GeneID:6260924"
/translation="MLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIRE
GLSQLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQPVSYRDSRTQGVMAQAQQTLGS
NAIYRRTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTN
ASTTQLLNIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATH
DTASAVLAAPLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVL
KNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRSLINPNDSRFINPPNMCREIQNA
CREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLN
QLCADACGLNVSMGPVEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDN
SDFAAHWLQFQSLSQLPKELCI"
misc_feature complement(455129..456544)
/gene="rhaB"
/locus_tag="YPTS_0408"
/note="rhamnulokinase; Provisional; Region: rhaB;
PRK10640"
/db_xref="CDD:182609"
misc_feature complement(455288..456544)
/gene="rhaB"
/locus_tag="YPTS_0408"
/note="L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases; Region: FGGY_RhuK;
cd07771"
/db_xref="CDD:198349"
misc_feature complement(order(455288..455293,455297..455302,
455306..455314,455318..455320,455576..455581,
455687..455689,455696..455698,455711..455713,
455723..455728,455738..455761,455768..455773,
455777..455779,455783..455791,455819..455824,
455861..455866,455870..455872,455879..455893,
455900..455908,455957..455959,456038..456040,
456059..456061,456068..456073,456197..456199,
456203..456217,456227..456229,456236..456241,
456290..456295,456353..456376,456488..456490,
456503..456505,456509..456511,456530..456532,
456536..456538,456542..456544))
/gene="rhaB"
/locus_tag="YPTS_0408"
/note="N- and C-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:198349"
misc_feature complement(order(455381..455386,455390..455398,
455642..455644,455654..455656,455687..455689,
455699..455701,455711..455713,455813..455815,
455819..455830,455885..455893,456293..456295,
456347..456355))
/gene="rhaB"
/locus_tag="YPTS_0408"
/note="active site"
/db_xref="CDD:198349"
misc_feature complement(order(455711..455713,455813..455815,
455819..455821,455885..455893,456293..456295,
456347..456355))
/gene="rhaB"
/locus_tag="YPTS_0408"
/note="carbohydrate binding site [chemical binding]; other
site"
/db_xref="CDD:198349"
misc_feature complement(order(455381..455386,455390..455398,
455642..455644,455654..455656,455687..455689,
455699..455701,455822..455830))
/gene="rhaB"
/locus_tag="YPTS_0408"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:198349"
gene 456582..456758
/locus_tag="YPTS_0409"
/db_xref="GeneID:6260925"
CDS 456582..456758
/locus_tag="YPTS_0409"
/note="KEGG: ypg:YpAngola_A0742 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870855.1"
/db_xref="GI:186893743"
/db_xref="GeneID:6260925"
/translation="MCRAAFGDVTADGEHVDGEHVDGVGMISGLLFLNANSVEICLFD
DLLITANRYGLMAE"
gene 456755..456898
/locus_tag="YPTS_0410"
/db_xref="GeneID:6260926"
CDS 456755..456898
/locus_tag="YPTS_0410"
/note="KEGG: ypg:YpAngola_A0741 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870856.1"
/db_xref="GI:186893744"
/db_xref="InterPro:IPR000923"
/db_xref="GeneID:6260926"
/translation="MTKVKVKQLTVSYLGGSPFPCDPAHTFQHCHAYLKKIAAKVVFN
VKN"
gene 456980..457801
/locus_tag="YPTS_0411"
/db_xref="GeneID:6260927"
CDS 456980..457801
/locus_tag="YPTS_0411"
/note="activates the expression of the rhaBAD operon and
rhaT gene"
/codon_start=1
/transl_table=11
/product="transcriptional activator RhaS"
/protein_id="YP_001870857.1"
/db_xref="GI:186893745"
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR003313"
/db_xref="InterPro:IPR013096"
/db_xref="GeneID:6260927"
/translation="MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEG
AGVHVFNGNPYTLSRGCVCFVRDHDRHLFESTDDLFLTNVLFRAPDAFRFLSGVGHFL
PRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQG
CQTQAGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQR
YLTRLRLLQARHQLCYSDNSVTDIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL"
misc_feature 456980..457795
/locus_tag="YPTS_0411"
/note="transcriptional activator RhaS; Provisional;
Region: PRK13503"
/db_xref="CDD:184094"
misc_feature 457028..457441
/locus_tag="YPTS_0411"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature 457682..457789
/locus_tag="YPTS_0411"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 457934..458806
/locus_tag="YPTS_0412"
/db_xref="GeneID:6260928"
CDS 457934..458806
/locus_tag="YPTS_0412"
/note="activates the expression of rhaRS in response to
L-rhamnose"
/codon_start=1
/transl_table=11
/product="transcriptional activator RhaR"
/protein_id="YP_001870858.1"
/db_xref="GI:186893746"
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR003313"
/db_xref="GeneID:6260928"
/translation="MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIV
WRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQWHK
LLPPLGPEQNQGYWRLTTQGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLK
RHRYRAEQAHLLPDGEQLDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTG
MSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQ
RFIRSPVLPAKNEP"
misc_feature 457934..458803
/locus_tag="YPTS_0412"
/note="transcriptional activator RhaR; Provisional;
Region: PRK13501"
/db_xref="CDD:184092"
misc_feature 457991..458401
/locus_tag="YPTS_0412"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature 458651..458761
/locus_tag="YPTS_0412"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene complement(458955..459989)
/locus_tag="YPTS_0413"
/db_xref="GeneID:6260929"
CDS complement(458955..459989)
/locus_tag="YPTS_0413"
/note="transports L-rhamnose and L-lyxose into the cell"
/codon_start=1
/transl_table=11
/product="rhamnose-proton symporter"
/protein_id="YP_001870859.1"
/db_xref="GI:186893747"
/db_xref="InterPro:IPR004673"
/db_xref="InterPro:IPR010476"
/db_xref="GeneID:6260929"
/translation="MNNAIILGIIWHLVGAASAACFYAPFKQVKKWSWETMWSIGGLV
SWLILPWTVSYLLLPDFWQYYGSFSIATLLPVFLFGAMWGIGNINYGLTMRYLGMSMG
IGIAIGITLIIGTLMTPILQGRFDVLLGTPGGRMTLLGVFVALIGVAIVSYAGLLKER
AMGIQAEEFNLKKGLILAVMCGIFSAGMSFAMDAAKPMHEAASALGINSLYVALPSYV
IIMGGGAIINLSYCFIRLATLKNLSVKADFSVAKPLLITNILFSALAGLMWYLQFFFY
AWGHAKIPQQYDYMSWMLHMSFYVLCGGIVGLLLKEWKCSTKKPVAVLCIGCLVIILA
ANIVGLGMAA"
misc_feature complement(458958..459989)
/locus_tag="YPTS_0413"
/note="L-rhamnose-proton symport protein (RhaT); Region:
RhaT; pfam06379"
/db_xref="CDD:115061"
misc_feature complement(458964..459971)
/locus_tag="YPTS_0413"
/note="RhaT L-rhamnose-proton symporter family protein;
Region: RhaT; TIGR00776"
/db_xref="CDD:162035"
gene 460143..460433
/locus_tag="YPTS_0414"
/db_xref="GeneID:6260930"
CDS 460143..460433
/locus_tag="YPTS_0414"
/note="KEGG: yps:YPTB0389 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001870860.1"
/db_xref="GI:186893748"
/db_xref="GeneID:6260930"
/translation="MMMITKWHSGGRLTGFMALTAVSQQKLRCPCSSLSLSVVDLKIS
SVVDLKINSVVDLKINKRLGINELPHLNRINAVQKGSRLLASRSNLGISLLS"
gene 460531..460806
/locus_tag="YPTS_0415"
/db_xref="GeneID:6260931"
CDS 460531..460806
/locus_tag="YPTS_0415"
/note="PFAM: IS1 transposase;
KEGG: ypp:YPDSF_3635 transposase"
/codon_start=1
/transl_table=11
/product="IS1 transposase"
/protein_id="YP_001870861.1"
/db_xref="GI:186893749"
/db_xref="InterPro:IPR005063"
/db_xref="GeneID:6260931"
/translation="MITRDDWGSYARLVPQDSHLTGKIFTQRIERNNLTLRTYIKRLA
RKTICFSRSTELHEKVIETCIEKYMFYSLEVSPKKSDKLNLFSRIWL"
misc_feature <460531..460743
/locus_tag="YPTS_0415"
/note="IS1 transposase; Region: DDE_Tnp_IS1; cl00721"
/db_xref="CDD:120062"
gene complement(460869..461294)
