LOCUS NC_011365 3887492 bp DNA circular BCT 22-JAN-2012
DEFINITION Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome.
ACCESSION NC_011365
VERSION NC_011365.1 GI:209542188
DBLINK Project: 59075
BioProject: PRJNA59075
KEYWORDS .
SOURCE Gluconacetobacter diazotrophicus PAl 5
ORGANISM Gluconacetobacter diazotrophicus PAl 5
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
Acetobacteraceae; Gluconacetobacter.
REFERENCE 1 (bases 1 to 3887492)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Ovchinnikova,G. and Triplett,E.W.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Gluconacetobacter diazotrophicus
PAl 5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3887492)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-OCT-2008) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3887492)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Ovchinnikova,G. and Triplett,E.W.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2008) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP001189.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4082943
Source DNA and organism available from Eric W. Triplett
(ewt@ufl.edu)
Contacts: Eric W. Triplett (ewt@ufl.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3887492
/organism="Gluconacetobacter diazotrophicus PAl 5"
/mol_type="genomic DNA"
/strain="PAl 5; ATCC 49037"
/culture_collection="ATCC:49037"
/db_xref="taxon:272568"
gene 5..1438
/locus_tag="Gdia_0001"
/db_xref="GeneID:6977005"
CDS 5..1438
/locus_tag="Gdia_0001"
/note="KEGG: gdi:GDI1771 putative chromosomal replication
initiator protein DnaA;
TIGRFAM: chromosomal replication initiator protein DnaA;
PFAM: Chromosomal replication initiator DnaA domain;
Chromosomal replication initiator DnaA;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiator protein DnaA"
/protein_id="YP_002274418.1"
/db_xref="GI:209542189"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:6977005"
/translation="MTGELSGFDAVAEARSARNVLDIHWSRICSRLQAEVGEVEYRTW
LKQISIGPVDGDEITLNLPTRFLRDWVRTQYGDRLSALWNAELPAIRRVELQVGRPEG
AADGAAPAPADPPVAATPATAAIVGDERVPENRNDLAAPLDPRFTFDTFVVGKPNEFA
YACARRVAERPSSPGFNPLFLYGGVGLGKTHLMHAIGSELVRGGAVSVAYMSAEKFMY
RFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIVV
SADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRISILESKAAASGVAVPAKVLEF
LAHKITSNVRELEGALNRLIAHANLFGRPVTLEATQDVLHDILKAHDRRVTIEEIQRK
VSEHWNIRLTDMSSARRARAVARPRQVAMYLAKQLTSRSLPEIGRKFGNRDHTTVMHA
VARVTELMERDTAFAEDVELLRRMLES"
misc_feature 77..1435
/locus_tag="Gdia_0001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 77..259
/locus_tag="Gdia_0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 473..901
/locus_tag="Gdia_0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 551..574
/locus_tag="Gdia_0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(554..577,737..739,836..838)
/locus_tag="Gdia_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 725..742
/locus_tag="Gdia_0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 875..877
/locus_tag="Gdia_0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1160..1429
/locus_tag="Gdia_0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1229..1231,1253..1258,1277..1279,1295..1303,
1328..1342,1349..1351,1358..1363)
/locus_tag="Gdia_0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1613..2737
/locus_tag="Gdia_0002"
/db_xref="GeneID:6973390"
CDS 1613..2737
/locus_tag="Gdia_0002"
/EC_number="2.7.7.7"
/note="binds the polymerase to DNA and acts as a sliding
clamp"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_002274419.1"
/db_xref="GI:209542190"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:6973390"
/translation="MKLKADRATLLKALAHIQSVAEKRNTIPILANVLINVADGRLTL
TATDMEIAVVEEIGAETSRNGAVTAPAAVLYEIARKLPDGVAIELDHTGGDAPLALRA
GRYATSLNVLDVDDFPSMMAGTLPYHFTMPAAVLRGLIDRTRFAISTEETRYYLNGIY
LHVAAGDEGSMLRAVATDGHRLARVETEVPPGAEEMPGVIVPRKTVAELRKLLDEGTE
DVAVGLSDTRIQFTVGTVTLTSKLIDGTFPEYDRVIPRGNDKILRVGKRDFSDAVARV
AAISQERSRPVKLSIGHNLLTLSAVSPDQGTAKEELDDNYVTYDSTPLEIGFQARYLN
DITDQIDKDVEFAFSDSSAPTIVRDVASPSALYVLMPMRV"
misc_feature 1613..2734
/locus_tag="Gdia_0002"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 1613..2731
/locus_tag="Gdia_0002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(1682..1684,1826..1828,1847..1849,2222..2224)
/locus_tag="Gdia_0002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(1829..1831,1838..1840,1922..1924,1928..1930,
2444..2446,2537..2542)
/locus_tag="Gdia_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2141..2143,2147..2158,2597..2599,2720..2731)
/locus_tag="Gdia_0002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2141..2143,2147..2152,2369..2371,2474..2476,
2513..2518,2606..2608,2720..2731)
/locus_tag="Gdia_0002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 2776..3897
/gene="recF"
/locus_tag="Gdia_0003"
/db_xref="GeneID:6973391"
CDS 2776..3897
/gene="recF"
/locus_tag="Gdia_0003"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_002274420.1"
/db_xref="GI:209542191"
/db_xref="InterPro:IPR001238"
/db_xref="InterPro:IPR003395"
/db_xref="GeneID:6973391"
/translation="MARLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEAL
SLLVPGRGLRGARSAEMARHGTTIWGVAARFTGPDGAPFDIATGSDPARPERRVFRRD
GETLRSRAALADHLSAVWLTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQ
AMGQRNRLLAAGRADPGWLSALEDSMARHAVAASAARLALVTQLNGEAAHTVPDGFPP
ARLDILCPIVQQLRDRPALAVEDWLRGRLAAGRAADGARGGAGMGAHRADMALSDQAS
GRPAAQASTGQQKALLLGVVLAHAALMTRSRGEAPMILLDEPLVHLDEARRAALFRSV
GAFDATVLMTGTDADQFAPLRGRAGFVSPRNGALDGKPV"
misc_feature 2782..3879
/gene="recF"
/locus_tag="Gdia_0003"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 2785..>3282
/gene="recF"
/locus_tag="Gdia_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 2866..2889
/gene="recF"
/locus_tag="Gdia_0003"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(2875..2880,2884..2892,3142..3144)
/gene="recF"
/locus_tag="Gdia_0003"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 3133..3144
/gene="recF"
/locus_tag="Gdia_0003"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <3604..3879
/gene="recF"
/locus_tag="Gdia_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 3622..3651
/gene="recF"
/locus_tag="Gdia_0003"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 3709..3726
/gene="recF"
/locus_tag="Gdia_0003"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 3733..3744
/gene="recF"
/locus_tag="Gdia_0003"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 3802..3822
/gene="recF"
/locus_tag="Gdia_0003"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 3984..6440
/locus_tag="Gdia_0004"
/db_xref="GeneID:6973392"
CDS 3984..6440
/locus_tag="Gdia_0004"
/EC_number="5.99.1.3"
/note="KEGG: gdi:GDI1774 putative DNA gyrase subunit B;
TIGRFAM: DNA gyrase, B subunit;
PFAM: DNA gyrase subunit B domain protein; ATP-binding
region ATPase domain protein; TOPRIM domain protein; DNA
topoisomerase type IIA subunit B region 2 domain protein;
SMART: DNA topoisomerase II"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_002274421.1"
/db_xref="GI:209542192"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:6973392"
/translation="MPDADMPNSDATGTLPDDSDYDAASISVLKGLDAVRKRPGMYIG
DTDDGSGLHHMAFEIIDNAVDEAQAGFATSCIVTLNGDGSVTVRDNGRGIPTDMHAEE
GVSAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHMIR
FRHGERDAPLTVVGPSDEPRGTQVTFKPSIGTFTRVEFEFAILERRMRELAFLNSGLQ
IVLRDERHTPTREENFHFQGGLAAFVEWLDRGKSSIVDPPITGSLQNEDNGIKVEFAL
TWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRVVGKYAESNASKKDSQSLVGEDM
REGMTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAASDMIAHWFETHPKEARAIVA
KVMDAAAAREAARRARELTRRKGVLDVSSLPGKLADCQERDPARSELFIVEGDSAGGT
AKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEVGTLITALGTGIGRGDVDQGGFS
IDKLRYHRVVIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIAQPPLYRAKRGND
ERYLKDDAALEQYLLDKALANASLRYGDGRVVAGADLAADMAFLRDVTRALQRLTLRA
PLWILEQAAIAGALNADTATVQTRVAALQAQLDEVSLPNERGWKVVASADGLEMARSV
RGVGEVYRLDPATLRSAEVRWLAERAERLATDFAGKVELTLDTTTRAADGPASLYERI
LAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVKVGDVENAAQVFSTLMGDV
VEPRRDFIVGNALKVANLDV"
misc_feature 4029..6437
/locus_tag="Gdia_0004"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 4137..4436
/locus_tag="Gdia_0004"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(4155..4157,4167..4169,4176..4178,4242..4244,
4248..4250,4254..4256,4260..4265,4380..4391)
/locus_tag="Gdia_0004"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 4167..4169
/locus_tag="Gdia_0004"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(4254..4256,4260..4262,4380..4382,4386..4388)
/locus_tag="Gdia_0004"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 4695..5141
/locus_tag="Gdia_0004"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 4854..4856
/locus_tag="Gdia_0004"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(5025..5027,5034..5039,5043..5045)
/locus_tag="Gdia_0004"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(5043..5045,5049..5051)
/locus_tag="Gdia_0004"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 5292..5651
/locus_tag="Gdia_0004"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(5310..5315,5322..5324,5547..5549,5553..5555,
5559..5561)
/locus_tag="Gdia_0004"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(5310..5312,5547..5549)
/locus_tag="Gdia_0004"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 6213..6401
/locus_tag="Gdia_0004"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 6494..7306
/locus_tag="Gdia_0005"
/db_xref="GeneID:6973393"
CDS 6494..7306
/locus_tag="Gdia_0005"
/note="KEGG: gdi:GDI1775 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274422.1"
/db_xref="GI:209542193"
/db_xref="GeneID:6973393"
/translation="MPLSMRRLADLSRKLVVGLAAGSLAVGVAPRAMATETPPQIDHT
YGVYADGLRALTITARYAITPDGYAIRSTMRSAGILGWVVRMNLTSQATGHFVPDGVN
PVSFDSAGYSRGADRHVVLDYNDGRAHIALETPPEPSREPIPAESLAPAKDTLSALIQ
MQRTVRAHHSCDGSAIVFDGARLLRVQAWTVGQQDMPDDSRQPYHGSALRCDFTDVQI
AGFRQSDGPGSAARKTIQGKVWFQDVPGDGLTIVRVLFDHPKFGRLAIVMQG"
sig_peptide 6494..6598
/locus_tag="Gdia_0005"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.999 at
residue 35"
misc_feature 6581..>7081
/locus_tag="Gdia_0005"
/note="Protein of unknown function (DUF3108); Region:
DUF3108; pfam11306"
/db_xref="CDD:204623"
gene complement(7293..7973)
/locus_tag="Gdia_0006"
/db_xref="GeneID:6973394"
CDS complement(7293..7973)
/locus_tag="Gdia_0006"
/note="TIGRFAM: phosphoglycolate phosphatase;
HAD-superfamily hydrolase, subfamily IA, variant 1;
PFAM: Haloacid dehalogenase domain protein hydrolase;
KEGG: gdi:GDI1776 phosphoglycolate phosphatase"
/codon_start=1
/transl_table=11
/product="phosphoglycolate phosphatase"
/protein_id="YP_002274423.1"
/db_xref="GI:209542194"
/db_xref="InterPro:IPR005833"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006346"
/db_xref="InterPro:IPR006439"
/db_xref="GeneID:6973394"
/translation="MPATPTPRIAVFDMDGTLLDSLPDLAASADRLLTGYGLPGISPD
LVRGMVGDGVAALVRRLLAHAGTPAAGIDVQQAVDRYMADYTPRATEQSRPFPGTEYA
LKTLRDAGWTLAICTNKPVAAARRIVSELGLTEWFDAIGGGDSFPVRKPDPAHLLGTI
GLAHGHADRAIMVGDHHNDIFAAKGAHVRSVFARWGYGRPDMEAGATIGADSMTEIPH
IAGQLIPA"
misc_feature complement(7308..7955)
/locus_tag="Gdia_0006"
/note="phosphoglycolate phosphatase; Provisional; Region:
PRK13222"
/db_xref="CDD:183901"
misc_feature complement(7401..7712)
/locus_tag="Gdia_0006"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(7623..7625)
/locus_tag="Gdia_0006"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 8105..9490
/gene="glmU"
/locus_tag="Gdia_0007"
/db_xref="GeneID:6973395"
CDS 8105..9490
/gene="glmU"
/locus_tag="Gdia_0007"
/note="forms a homotrimer; catalyzes the acetylation of
glucosamine-1-phosphate and uridylation of
N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc;
function in cell wall synthesis"
/codon_start=1
/transl_table=11
/product="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase"
/protein_id="YP_002274424.1"
/db_xref="GI:209542195"
/db_xref="InterPro:IPR001228"
/db_xref="InterPro:IPR001451"
/db_xref="InterPro:IPR005835"
/db_xref="InterPro:IPR005882"
/db_xref="GeneID:6973395"
/translation="MNATVPSAAPADLPAHRPATAVILAAGMGTRMKSDRPKVMHPLA
GQPMLRYLLDNAASVFDRIVVVVGPGMEQVAALAAPHAVVVQQDRLGTAHAAAQAADL
FGSGDVAVLYGDNPLITVASMRRMLACRAGEGGNEGAGLALMAMRPRDPGRYGRVVTQ
DGLVRRIVEWADASDEERAITLCNAGVLCAGAEDFRRWLGAVRNDNAQGEYYLGDVVA
MAVAEGRQVRAVEAPEDELRGINSRAELAEAEACVQRRLRAAALDGGATLVAPETVFL
AADTVLEPDVLVQPHVVFGPGVTVRRGAEIRAFSHLEGCVVGPGALIGPYARLRPGSD
VGAAAHVGNFVELKATTLGAGAKANHLSYLGDATIGPATNIGAGTITCNYDGVFKHRT
EIGAGCFVGSNAILVAPVRIGDGALVAAGSVITQDVPPDAMALGRARQTNKDGRGASL
QAALRRKKEQG"
misc_feature 8147..9475
/gene="glmU"
/locus_tag="Gdia_0007"
/note="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional; Region: glmU; PRK14353"
/db_xref="CDD:184642"
misc_feature 8165..8842
/gene="glmU"
/locus_tag="Gdia_0007"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature order(8174..8182,8300..8302,8378..8380,8387..8389,
8438..8440,8444..8446)
/gene="glmU"
/locus_tag="Gdia_0007"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature order(8444..8446,8825..8827)
/gene="glmU"
/locus_tag="Gdia_0007"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
misc_feature 8897..9424
/gene="glmU"
/locus_tag="Gdia_0007"
/note="N-acetyl-glucosamine-1-phosphate uridyltransferase
(GlmU), C-terminal left-handed beta-helix (LbH)
acetyltransferase domain: GlmU is also known as
UDP-N-acetylglucosamine pyrophosphorylase. It is a
bifunctional bacterial enzyme that catalyzes two...;
Region: LbH_GlmU_C; cd03353"
/db_xref="CDD:100044"
misc_feature order(9092..9094,9140..9142,9146..9148,9182..9184,
9191..9193,9224..9235,9248..9256,9269..9271,9299..9301,
9305..9310,9359..9364,9413..9415)
/gene="glmU"
/locus_tag="Gdia_0007"
/note="active site"
/db_xref="CDD:100044"
misc_feature order(9092..9094,9140..9142,9146..9148,9182..9184,
9191..9193,9224..9232,9251..9253,9269..9271)
/gene="glmU"
/locus_tag="Gdia_0007"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100044"
misc_feature order(9233..9235,9248..9250,9254..9256,9305..9310,
9359..9364,9413..9415)
/gene="glmU"
/locus_tag="Gdia_0007"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100044"
gene 9490..11313
/locus_tag="Gdia_0008"
/db_xref="GeneID:6973396"
CDS 9490..11313
/locus_tag="Gdia_0008"
/note="Catalyzes the first step in hexosamine metabolism,
converting fructose-6P into glucosamine-6P using glutamine
as a nitrogen source"
/codon_start=1
/transl_table=11
/product="glucosamine--fructose-6-phosphate
aminotransferase"
/protein_id="YP_002274425.1"
/db_xref="GI:209542196"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR001347"
/db_xref="InterPro:IPR005855"
/db_xref="GeneID:6973396"
/translation="MCGIVGVVGCKCATPVIFDALRRLEYRGYDSAGIATLVDGRIER
RRAAGKLDNLAALLEREPLAGVTGIGHTRWATHGAPTENNAHPHGTERVSVVHNGIIE
NFEELRRELEQAGHVFTTETDSETVAQLVDFHLARGLSPRDAAFAALRRLEGAYALAM
LFAGHDGLVIGARHGAPLVVGYGEQEMFLGSDSLALAPLTRRIAYLDDGDWVVVTRDG
AEFFDASGERVERAVRTTALIAGSVGKDGYRHYMEKELHEHPVVIGQTLQRLIDPATR
RVVLPDLPFDLASVPRAVVTACGSAFYAGMIGRYWLEGIARLPVDIDVASEMRYRDPP
LTPGGLGLLISQSGETADTLAALRGMRARQQHIVSVLNVEQSTIARESDVVLGTVAGP
EISVASTKAFTAQLSVLACLAIAAGRLRGTVSAEREQEMVAALLDLPSRASEVFDQAP
AIREMAAVVANARDVLYLGRGSSFPVALEGALKLKEVSYIHAEAYAAGEMKHGPISLI
DQTVPIVATVPSGPLFEKTVSNLQEARARGGRLLVFTDTKGAERLRGLAEIVVAIPTV
DEFTSPVLQTIPVQMLAYEVALLKGTDVDQPRNLAKSVTVE"
misc_feature 9490..11310
/locus_tag="Gdia_0008"
/note="glucosamine--fructose-6-phosphate aminotransferase;
Reviewed; Region: PRK00331"
/db_xref="CDD:178980"
misc_feature 9493..10131
/locus_tag="Gdia_0008"
/note="Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the N-terminus
of glucosamine-6P synthase (GlmS, or GFAT in humans). The
glutaminase domain catalyzes amide nitrogen transfer from
glutamine to the appropriate substrate. In...; Region:
GFAT; cd00714"
/db_xref="CDD:48478"
misc_feature order(9493..9495,9568..9570,9706..9711,9715..9720,
9745..9747,9781..9786,9856..9861)
/locus_tag="Gdia_0008"
/note="glutaminase active site [active]"
/db_xref="CDD:48478"
misc_feature 10363..10740
/locus_tag="Gdia_0008"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:88405"
misc_feature order(10381..10386,10414..10419,10426..10431,10450..10452,
10456..10458,10468..10470,10477..10479,10543..10545)
/locus_tag="Gdia_0008"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88405"
misc_feature order(10387..10392,10522..10530)
/locus_tag="Gdia_0008"
/note="active site"
/db_xref="CDD:88405"
misc_feature 10837..11304
/locus_tag="Gdia_0008"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:88406"
misc_feature order(10900..10902,10942..10944,10954..10956,10960..10962,
10966..10968,10972..10974,10984..10986,10990..10998,
11002..11013,11062..11067,11077..11079,11083..11088,
11281..11286,11299..11301)
/locus_tag="Gdia_0008"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88406"
misc_feature order(10936..10938,10945..10947)
/locus_tag="Gdia_0008"
/note="active site"
/db_xref="CDD:88406"
gene 11478..12494
/locus_tag="Gdia_0009"
/db_xref="GeneID:6973397"
CDS 11478..12494
/locus_tag="Gdia_0009"
/note="TIGRFAM: glycine oxidase ThiO;
PFAM: FAD dependent oxidoreductase;
KEGG: gdi:GDI1779 thiamine biosynthesis oxidoreductase
ThiO"
/codon_start=1
/transl_table=11
/product="glycine oxidase ThiO"
/protein_id="YP_002274426.1"
/db_xref="GI:209542197"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR012727"
/db_xref="GeneID:6973397"
/translation="MEQAESGARLRVLVRGAGVAGLTSAVTLAERGADVTLLEVSAEL
GAGAASWMAGGMLAPWCEAESAPPEVTRDSLESVDWWASHVPGVVRNGTLVLAPPRDE
GDIARFGRRTSHFDLVDAARIAELEPDLDGRFNKGLFFPAEGHVDPRLALAALRDRLV
ALGGTVRMNAPAGDVPADLAAGGFDRVVDCTGVAARPHLKGLRAMRGEMLLLRCPDVT
LHRPVRMLHPRIPVYIVPRADHLFMVGATMVESENAGGMTLRSMVELLTAAYVLHPAF
GEAEIVETGVGLRPAYPDNVPAVTVQGRTVYVNGMYRHGFLLSPSRARQAADIVFGTA
EAAA"
misc_feature 11523..>11594
/locus_tag="Gdia_0009"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 11559..12476
/locus_tag="Gdia_0009"
/note="glycine oxidase ThiO; Region: thiamin_ThiO;
TIGR02352"
/db_xref="CDD:162817"
gene 12517..12714
/locus_tag="Gdia_0010"
/db_xref="GeneID:6973398"
CDS 12517..12714
/locus_tag="Gdia_0010"
/note="TIGRFAM: thiamine biosynthesis protein ThiS;
PFAM: thiamineS protein;
KEGG: gdi:GDI1780 putative thiamine biosynthesis protein
ThiS"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiS"
/protein_id="YP_002274427.1"
/db_xref="GI:209542198"
/db_xref="InterPro:IPR003749"
/db_xref="InterPro:IPR010035"
/db_xref="GeneID:6973398"
/translation="MRILVNEEPREVSTATLAALLDELGYGGARVATAVNGDFVPVSR
RAALTLDEGARVEILAPMQGG"
misc_feature 12520..12711
/locus_tag="Gdia_0010"
/note="ThiaminS ubiquitin-like sulfur carrier protein;
Region: ThiS; cd00565"
/db_xref="CDD:176353"
misc_feature order(12631..12633,12685..12693)
/locus_tag="Gdia_0010"
/note="thiS-thiF/thiG interaction site; other site"
/db_xref="CDD:176353"
gene 12719..13489
/gene="thiG"
/locus_tag="Gdia_0011"
/db_xref="GeneID:6973399"
CDS 12719..13489
/gene="thiG"
/locus_tag="Gdia_0011"
/note="functions in thiamine (vitamin B1) biosynthesis; in
Bacillus subtilis this enzyme catalyzes the formation of
thiazole from dehydroxyglycine and
1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate"
/codon_start=1
/transl_table=11
/product="thiazole synthase"
/protein_id="YP_002274428.1"
/db_xref="GI:209542199"
/db_xref="InterPro:IPR008867"
/db_xref="GeneID:6973399"
/translation="MLFYGTELKSRLMLGTAQYPSPEILSDAVRAAEAGVVTVSLRRE
SAGQRAGQAFWSMIRDLGVPVLPNTAGCHTVKEAVTTAHMAREVFDTDWIKLEVIGES
DTLQPDMFGLVEAARILSRDGFKVFPYMTEDLVGAERLLQAGCEVLMPWGAPIGSGKG
LNNVFGLRALRAHFPDVPLVVDAGIGLPSHAAQAMELGYDAVLINTAVAKAGDPVRMA
RAFRLAVEAGLIAREADPIEERDMAAPSTPVLGRAMLA"
misc_feature 12728..13465
/gene="thiG"
/locus_tag="Gdia_0011"
/note="Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous cofactor
that plays an important role in carbohydrate and amino
acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728"
/db_xref="CDD:73390"
misc_feature order(12836..12838,12875..12877,12884..12886)
/gene="thiG"
/locus_tag="Gdia_0011"
/note="ThiS interaction site; other site"
/db_xref="CDD:73390"
misc_feature order(13001..13003,13007..13009,13262..13264)
/gene="thiG"
/locus_tag="Gdia_0011"
/note="putative active site [active]"
/db_xref="CDD:73390"
misc_feature order(13016..13018,13025..13027,13034..13042,13109..13111,
13115..13123,13130..13135,13187..13195,13202..13204,
13220..13222,13232..13234,13277..13285,13295..13297,
13304..13309,13334..13336,13349..13357,13364..13369,
13376..13378,13397..13399,13406..13411,13415..13429,
13433..13438,13442..13444,13448..13456,13460..13462)
/gene="thiG"
/locus_tag="Gdia_0011"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:73390"
gene 13528..14136
/locus_tag="Gdia_0012"
/db_xref="GeneID:6973400"
CDS 13528..14136
/locus_tag="Gdia_0012"
/EC_number="2.5.1.3"
/note="KEGG: gdi:GDI1782 thiamine-phosphate
pyrophosphorylase;
TIGRFAM: thiamine-phosphate pyrophosphorylase;
PFAM: thiamine monophosphate synthase"
/codon_start=1
/transl_table=11
/product="thiamine-phosphate pyrophosphorylase"
/protein_id="YP_002274429.1"
/db_xref="GI:209542200"
/db_xref="InterPro:IPR003733"
/db_xref="GeneID:6973400"
/translation="MSLASRIYPVVDRADWIDRLGGAGARLIQLRVKDLQGAALLAEI
RAAKAHAARHGVTLVLNDYWRLALDEGIDFIHLGQEDLDTADVAAIRAGGIRLGVSTH
STDELDRALSVAPDYVALGPVWPTKLKKMPWAPQGVERLAEWKRLVGPVPLVAIGGIT
LARAASCIAAGADCVSAVSDFTGQPDPEAQVRAWLAATGDMT"
misc_feature 13546..14115
/locus_tag="Gdia_0012"
/note="Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution of
the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
Region: TMP_TenI; cd00564"
/db_xref="CDD:73367"
misc_feature order(13549..13551,13555..13557,13612..13614,13618..13620,
13753..13755,13825..13827,13876..13878,13882..13884,
13903..13905,13909..13911,13987..13989,13999..14001,
14053..14064)
/locus_tag="Gdia_0012"
/note="thiamine phosphate binding site [chemical binding];
other site"
/db_xref="CDD:73367"
misc_feature order(13612..13614,13618..13620,13624..13626,13708..13713,
13768..13770,13825..13827,13903..13905,13909..13914,
13999..14001,14059..14064)
/locus_tag="Gdia_0012"
/note="active site"
/db_xref="CDD:73367"
misc_feature order(13618..13620,13624..13626,13708..13713,13759..13761,
13768..13770,13825..13827,13912..13914)
/locus_tag="Gdia_0012"
/note="pyrophosphate binding site [ion binding]; other
site"
/db_xref="CDD:73367"
gene 14442..17066
/locus_tag="Gdia_0013"
/db_xref="GeneID:6973401"
CDS 14442..17066
/locus_tag="Gdia_0013"
/note="PFAM: cyclic nucleotide-binding; sodium/hydrogen
exchanger;
KEGG: gdi:GDI1784 putative Na+/H+ antiporter"
/codon_start=1
/transl_table=11
/product="cyclic nucleotide-regulated Na/H exchanger"
/protein_id="YP_002274430.1"
/db_xref="GI:209542201"
/db_xref="InterPro:IPR000595"
/db_xref="InterPro:IPR006153"
/db_xref="GeneID:6973401"
/translation="MAVTGLAAVLLAIAVLLVIVSAVQPIARRLELSETVLLAVVGIL
LGGSADLVLRSSYTDLFNGAAETLLDFPLNSEAFLLIFLPALVFQGALAIDVRRLAHE
TATVLLLAVVAVVVSTATIGLALFPFASLPLSVCLLLGSIVATTDPSAVAGIFRDIGA
TSRLTRLVEGEALLNDAAAISIFSILLTAVTSHHPIAPGAALMDFTLAFSGALVMGVL
FGRLTLLLITMLGAAPAAEITLTVALPYIVYIVCDEFLGFSGVVATATAGLTLSVYGP
STFRPQTWRFLNELWQQLVFWAGSLVFVLASMLVPRLLVGMTRWDCVLILIATGAGLL
ARGAVVFGLLPVLAATRLSPPVPNPFKVTMVWGGLRGAITLALALAVTENEHVATPVA
HFIGIIATGFVLITLFVNGTTLRYLVVFLKLDQLSPIDQALRHQVLGIGLGEVRDRTH
EMAEELGFSRAVAGNVMSMLDRRVAEEEQANTFDTALADRQRVTLALIVVANKERSIL
LDLFRIQGLSRPVMETLLRSAEAMVDGARLEGRFGYVRALRRRLRPSMRFRLAQVIHH
RFHFDQPLMSCMTERFEMLMISYFVSLSLIRFMRTRMEATLGSRISEIVGEVLERQRK
LLNEALQTLRLHYHGYSEALESRLLQQVALRLEGEEYDALMSESLISEELHRELSRDV
ERRRGQLDFKLTFNIKAGIEARLRSLPVFHGLPDEALHALAPQMSIHFTSPGERLYHR
GRKVRIVYFISAGVTETHYAEHDVRFGAGDVLGADEALSGERVHAVSRSLQFGHFLTM
SARRFRRLVAEYPVIQHNLAELARARETSERSEVQLVPTDGDNTVAPSDEAIALATAS
LSDALPATMGQDSPPSGG"
sig_peptide 14442..14510
/locus_tag="Gdia_0013"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.993) with cleavage site probability 0.945 at
residue 23"
misc_feature 14619..16022
/locus_tag="Gdia_0013"
/note="Na+/H+ antiporter, bacterial form; Region: a_cpa1;
TIGR00831"
/db_xref="CDD:129911"
misc_feature 16554..>16946
/locus_tag="Gdia_0013"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:31008"
misc_feature 16569..16895
/locus_tag="Gdia_0013"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:28920"
misc_feature order(16758..16763,16788..16796)
/locus_tag="Gdia_0013"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:28920"
misc_feature order(16854..16862,16872..16880)
/locus_tag="Gdia_0013"
/note="flexible hinge region; other site"
/db_xref="CDD:28920"
gene 17150..17605
/locus_tag="Gdia_0014"
/db_xref="GeneID:6973402"
CDS 17150..17605
/locus_tag="Gdia_0014"
/note="PFAM: ferredoxin; [2Fe-2S]-binding domain protein;
KEGG: gdi:GDI1785 putative isoquinoline 1-oxidoreductase
subunit alpha"
/codon_start=1
/transl_table=11
/product="(2Fe-2S)-binding domain-containing protein"
/protein_id="YP_002274431.1"
/db_xref="GI:209542202"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR002888"
/db_xref="InterPro:IPR006058"
/db_xref="GeneID:6973402"
/translation="MLTLQVNGAAHQVDVPDDMPLLWVLRDVLGLPGTKFGCGIGECG
ACTVHVDGRPVRACSLPVSLVGARPVTTIEGLSDDPLATGVRQAWLEIDVVQCGYCQT
GQIMAAVALLKANPHPTDEEIEQAMAGNICRCGTYRRIRAAIRNAAGAA"
misc_feature 17150..17560
/locus_tag="Gdia_0014"
/note="4-hydroxybenzoyl-CoA reductase, gamma subunit;
Region: 4hydroxCoAred; TIGR03193"
/db_xref="CDD:132237"
misc_feature 17153..>17302
/locus_tag="Gdia_0014"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature order(17249..17254,17261..17263,17270..17272,17276..17287)
/locus_tag="Gdia_0014"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature order(17261..17263,17276..17278,17285..17287)
/locus_tag="Gdia_0014"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
misc_feature 17363..17560
/locus_tag="Gdia_0014"
/note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799"
/db_xref="CDD:201981"
gene 17605..19752
/locus_tag="Gdia_0015"
/db_xref="GeneID:6973403"
CDS 17605..19752
/locus_tag="Gdia_0015"
/note="PFAM: aldehyde oxidase and xanthine dehydrogenase
molybdopterin binding;
KEGG: gdi:GDI1786 putative isoquinoline 1-oxidoreductase
subunit beta"
/codon_start=1
/transl_table=11
/product="aldehyde oxidase and xanthine dehydrogenase
molybdopterin-binding subunit"
/protein_id="YP_002274432.1"
/db_xref="GI:209542203"
/db_xref="InterPro:IPR001005"
/db_xref="InterPro:IPR008274"
/db_xref="GeneID:6973403"
/translation="MGRTMLSRRQALAGTGGLLLAAMLPRGAARAATRIVEDQTGPFA
PNAFVRIAPDGAITLILPNVEMGQGIYTGEAMLIAEELDIGLEQIQIEAAPPDDAYVT
RELGTQATGGSTSTIATWKSLREAGAVARTLLVQAAAAQWSVDPASCTTGGGMVRHEA
TGRSLAYGELATAAAALPVPAAPVTLRDPSSFRLVGRSQHRLDAPAKVAGTATFGIDV
QVPGMRIGTVAACPVMGGVLAHVDDSAARQVPGVRDVLTIGNAVCVVGNHFWAARKGL
DALVITWDEGVNAAVSTDTIYRQLHEALDGPAITAHAKGDARAAIAGATTRVEAVYQQ
PLLAHAPMEPINCTVQVTPERCDIWVGSQVPMRARDAAADITGLGKDRVHVHNQYIGG
GFGRRLEHEYVIQAVQFARQVAYPLKIVWTREEDLTLDRFRPAYVDRLVGGLDRKGNL
VGLSHRIVGPAVVARWAPEALLPNGVDDDLLAATVETPYAIPAMFLDYARREAPGVVT
AWWRGVGGTRGVFVVESFIDELAARAGKDAVAFRRQMTGGNPRARAVLDLAAEKASWG
EPLPKHVGRGIALQYVFGSYLATVMEVDMSDMDTVRVLRAVVAVDCGRMVNPDQVVSQ
IEGGLIFGISAALFNEVTLRDGRVQETNFHSYRVLRMNESPMIEVHLVNSTEDPGGIG
ETGTAAAAAALANAMAAATGRRYRRLPLTGPQA"
sig_peptide 17605..17700
/locus_tag="Gdia_0015"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.958 at
residue 32"
misc_feature <17722..>18030
/locus_tag="Gdia_0015"
/note="Molybdopterin-binding domain of aldehyde
dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738"
/db_xref="CDD:202368"
misc_feature 17734..19737
/locus_tag="Gdia_0015"
/note="Aerobic-type carbon monoxide dehydrogenase, large
subunit CoxL/CutL homologs [Energy production and
conversion]; Region: CoxL; COG1529"
/db_xref="CDD:31718"
misc_feature 18232..18462
/locus_tag="Gdia_0015"
/note="Aldehyde oxidase and xanthine dehydrogenase, a/b
hammerhead domain; Region: Ald_Xan_dh_C; smart01008"
/db_xref="CDD:198076"
misc_feature 18586..>19233
/locus_tag="Gdia_0015"
/note="Molybdopterin-binding domain of aldehyde
dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738"
/db_xref="CDD:202368"
misc_feature <19339..19599
/locus_tag="Gdia_0015"
/note="Molybdopterin-binding domain of aldehyde
dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738"
/db_xref="CDD:202368"
gene 19749..21011
/locus_tag="Gdia_0016"
/db_xref="GeneID:6973404"
CDS 19749..21011
/locus_tag="Gdia_0016"
/EC_number="1.1.99.3"
/note="KEGG: gdi:GDI1787 alcohol dehydrogenase cytochrome
c subunit precursor"
/codon_start=1
/transl_table=11
/product="gluconate 2-dehydrogenase (acceptor)"
/protein_id="YP_002274433.1"
/db_xref="GI:209542204"
/db_xref="InterPro:IPR003219"
/db_xref="InterPro:IPR008168"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:6973404"
/translation="MRAVRAVLALVTLGVATGGVAQAQDQAQVQAQDSDLVRRGAYLE
HAADCEVCHTKPGGRPFAGGRAFDLPGIGTIYAPNITPDRETGIGAYTDAQFDSAVRA
GVAPGWTHLYPVMPYASYARMTADDVRAIRAYLATLAPVHATARANRVRFPYSIRLAM
VAWNLLYRPSSAMMDEPGRSAAWNRGRYLVEAAGHCAECHSPRTMMQATSGARSYAGA
LTAGWEAYNISSDPDSGIGAWTDAQLTAYLSTGHADGRGTAAGPMAEVVGYSLRYLTP
QDIASMVTYLRSLPARQSNETVAAIPPQALAHATPTHSNGERLFAGACAGCHLTDGQG
RQVDEAALWGARSLGEIQGRNLIQTMVQGSRLDTARGVMTMPAFGPEYRDQDLADLAN
YTIGHFANRVGHVTAQDIAAVRQPGGAH"
sig_peptide 19749..19820
/locus_tag="Gdia_0016"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.997 at
residue 24"
misc_feature 20190..20615
/locus_tag="Gdia_0016"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature 20532..20993
/locus_tag="Gdia_0016"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature <20691..20927
/locus_tag="Gdia_0016"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene complement(21058..21132)
/locus_tag="Gdia_R0001"
/note="tRNA-Met6"
/db_xref="GeneID:6973405"
tRNA complement(21058..21132)
/locus_tag="Gdia_R0001"
/product="tRNA-Met"
/db_xref="GeneID:6973405"
gene 21308..22486
/locus_tag="Gdia_0017"
/db_xref="GeneID:6973406"
CDS 21308..22486
/locus_tag="Gdia_0017"
/note="PFAM: MscS Mechanosensitive ion channel;
KEGG: gdi:GDI1788 putative mechanosensitive ion channel"
/codon_start=1
/transl_table=11
/product="mechanosensitive ion channel protein MscS"
/protein_id="YP_002274434.1"
/db_xref="GI:209542205"
/db_xref="InterPro:IPR006685"
/db_xref="GeneID:6973406"
/translation="MKDAFIDLLTDIRKSFGWLPGSVASVLVLCAAAVMAELCSRVVT
KLILRIPGQKRGAFVRTFTLAMQRPARVMLAIIFVGTALPASGLSYETMHRAAHGLLV
LFVLMVGYAAIVAMRILSDAYLLRINGKEDRDDILSRTHMTQVRVLRRMADILVGLLT
VGSALMTFESVREYGLSLFASAGAASVVVGLAARPLLTNLIAGMQIAMTQPIRMEDLI
IINGDWAWVEEITATYVVLRVWDWRRHIVPISWFLENPFQNWTHNSAALIGVVFLYVD
FHAPMDRIRGRLRDIVQASPLWDGKVFDVQVSDCSTQVMTIRVIASARSAMQSWDLRC
EIREKIILFLRDECPEALPRERMAHVSSPAGQDVLGPHGILSPPIDRPPPGAYTGPPG
"
sig_peptide 21308..21418
/locus_tag="Gdia_0017"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.721) with cleavage site probability 0.700 at
residue 37"
misc_feature 21521..22348
/locus_tag="Gdia_0017"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature <21893..22348
/locus_tag="Gdia_0017"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene complement(22487..24019)
/locus_tag="Gdia_0018"
/db_xref="GeneID:6973407"
CDS complement(22487..24019)
/locus_tag="Gdia_0018"
/note="PFAM: amino acid permease-associated region;
KEGG: gdi:GDI1789 putative cationic amino acid
transporter"
/codon_start=1
/transl_table=11
/product="amino acid permease-associated protein"
/protein_id="YP_002274435.1"
/db_xref="GI:209542206"
/db_xref="InterPro:IPR004841"
/db_xref="GeneID:6973407"
/translation="MSLISFSSKRLRLRKSIQQIESESQNHGLRRTLGPVQLMMLGIG
STIGAGIYVMTGTAAATYAGPAILLSFLVAGLACLFTAFSYGELASTMPVSGSAYSYA
YVSMGEGVAWAVGWLLLLEYGISCAGVAAGFSGYATSLLHDLGVHVPSFLCTTLVQTV
PTPHGASLLVAPRMDLVGAVSVLVVTGLLVLGVEESARINTLIVFVKVGVLMLFMAFG
IRYVHLSNLNPFIPPRENGFHYGVPGIFRAASVIFFAYVGFETVSTASAEARNPRRDV
PLGIIGSLLICTLVYICVATVLIGVVPFRQLGVADPLAIAVDAIGQPWLAIMIKVGAV
VGLCSVILGLLYGQTRIFFTIARDGLLPPIFCRLHPTFRTPWVGTIVLGVLVAVATAT
LPIDIISDLVSLGTATAFGIVCFTVIWQRNARPDLHRPFSVPLGGVKVGGVWIGVAPA
LGILFCLIMAGPLFVDMIRALTNGDPLPAILLGSYIVLGVLSYAFYGHSHSRLGREEV
AL"
misc_feature complement(22643..23935)
/locus_tag="Gdia_0018"
/note="amino acid transporter; Region: 2A0306; TIGR00909"
/db_xref="CDD:129987"
misc_feature complement(<22895..>23260)
/locus_tag="Gdia_0018"
/note="Spore germination protein; Region: Spore_permease;
cl15802"
/db_xref="CDD:210202"
gene complement(24179..24967)
/locus_tag="Gdia_0019"
/db_xref="GeneID:6973408"
CDS complement(24179..24967)
/locus_tag="Gdia_0019"
/note="KEGG: gdi:GDI1790 putative acetylhydrolase"
/codon_start=1
/transl_table=11
/product="putative acetylhydrolase"
/protein_id="YP_002274436.1"
/db_xref="GI:209542207"
/db_xref="GeneID:6973408"
/translation="MIRRLTARSLLALPLLLLAGLGTARATPPNLAVQPVSRMDTPWW
RQRFADKQAEIAHGRFDLVWLGDSITQNWERTGPEPWRQFAPVWQHYYGDRHAINLGF
KGDSTCHVLWRLDHGELDFRPPPRLFVVLVGANNFGHVHIDAGHTYPGITRIVDQIHG
RFPAAQVLLLEVLPSIRTAWITANTQRLNAMLRADIRRDRPWLHLQDVGAALERNGAP
DPTRFLDPHLTPPDPPLHPSAAAQQDIARMIEPTVAAILGDHPH"
sig_peptide complement(24887..24967)
/locus_tag="Gdia_0019"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.975 at
residue 27"
misc_feature complement(<24386..24883)
/locus_tag="Gdia_0019"
/note="SGNH_hydrolase, or GDSL_hydrolase, is a diverse
family of lipases and esterases. The tertiary fold of the
enzyme is substantially different from that of the
alpha/beta hydrolase family and unique among all known
hydrolases; its active site closely...; Region:
SGNH_hydrolase; cl01053"
/db_xref="CDD:207299"
misc_feature complement(order(24563..24565,24656..24658,24764..24766))
/locus_tag="Gdia_0019"
/note="active site"
/db_xref="CDD:58496"
misc_feature complement(order(24563..24565,24656..24658,24764..24766))
/locus_tag="Gdia_0019"
/note="oxyanion hole [active]"
/db_xref="CDD:58496"
gene complement(24982..25824)
/locus_tag="Gdia_0020"
/db_xref="GeneID:6973409"
CDS complement(24982..25824)
/locus_tag="Gdia_0020"
/note="BacA; phosphatase activity in Escherichia coli not
kinase; involved in bacitracin resistance as bacitracin
supposedly sequesters undecaprenyl disphosphate which
reduces the pool of lipid carrier available to the cell"
/codon_start=1
/transl_table=11
/product="undecaprenyl pyrophosphate phosphatase"
/protein_id="YP_002274437.1"
/db_xref="GI:209542208"
/db_xref="InterPro:IPR003824"
/db_xref="GeneID:6973409"
/translation="MTLIQAIVIAILQGATELFPVSSLGHAVIVPALLGWAFDPHGEI
FLPFLVMLHLGTAIALLVYFRNDWAAIFQGLRGRDGSQRQAESIHILALLVVATIPAV
IIGGLLEHWLRALFGTARYAAIFLFLNGLLLLLTERMKSRQPVQGGYAIASLTYADAA
IIGLWQCLAFLPGISRSGATIIGALFRGLNHEGAARFSFLMAQPVIIAATVREALHMR
HVAIPPGQMQVATIGAMVAAVTALASTAFLMRYFHNHERWALSPFGYYCVLAGAVSFF
ILGH"
misc_feature complement(24991..25824)
/locus_tag="Gdia_0020"
/note="undecaprenyl pyrophosphate phosphatase; Reviewed;
Region: PRK00281"
/db_xref="CDD:178958"
gene 25939..26406
/locus_tag="Gdia_0021"
/db_xref="GeneID:6973410"
CDS 25939..26406
/locus_tag="Gdia_0021"
/note="PFAM: Mammalian cell entry related domain protein;
KEGG: gdi:GDI1792 putative toluene tolerance protein"
/codon_start=1
/transl_table=11
/product="mammalian cell entry domain-containing protein"
/protein_id="YP_002274438.1"
/db_xref="GI:209542209"
/db_xref="InterPro:IPR003399"
/db_xref="GeneID:6973410"
/translation="MARENGSAIVFSGLVLLVAGAFYAYARASQVDLGNDRYALSARF
ISANGLHVGAEVQLAGVPVGRVTAIALDPATAMANVGFTLDRDLSLPADSGVMIGSAT
MTGDDALMVVPGKAPARLPPGAVITNAQEAVSLEQQVSNYIFGNGGLPSDSMQ"
sig_peptide 25939..26019
/locus_tag="Gdia_0021"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.886 at
residue 27"
misc_feature 26050..26280
/locus_tag="Gdia_0021"
/note="mce related protein; Region: MCE; pfam02470"
/db_xref="CDD:111376"
gene complement(26417..27526)
/locus_tag="Gdia_0022"
/db_xref="GeneID:6973411"
CDS complement(26417..27526)
/locus_tag="Gdia_0022"
/note="KEGG: gdi:GDI1793 putative exported protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274439.1"
/db_xref="GI:209542210"
/db_xref="GeneID:6973411"
/translation="MNHAPTAASSRAKTGGDAARQPAPLSMFEFWPGWAIYTPVVLYW
ILLGLWHRDFSLPTAANPRILTGGLCGESKTSILDMAGETARRWIAPYVSVTTGSADD
GAAALAALDRGGLALPVVVKPDIGCNGAGVKLVTTPDELVAAVALYPPDTPLVMQRLI
PFEHEAGVFYIRHPDEDRGRISSLTYKEAPVIVGDGRSTVRQLIDADARTRLVPHLYL
PRLGDRVHEVLPAGMPLRLVFAGNHSKGSIFRNGADDITPALVEQIDRIMQDIPDFHF
GRIDLKFESIAALRLGRGFEIIEINGVGSEATHIWDSRTTLREAYAAQFTHYRETFRI
GAKKKKAGWRTSGAFTMLHYWRQQRRLLASYPLND"
misc_feature complement(<27044..>27175)
/locus_tag="Gdia_0022"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
gene complement(27523..28098)
/locus_tag="Gdia_0023"
/db_xref="GeneID:6973412"
CDS complement(27523..28098)
/locus_tag="Gdia_0023"
/note="KEGG: gdi:GDI1794 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274440.1"
/db_xref="GI:209542211"
/db_xref="GeneID:6973412"
/translation="MFPSLPDLLAAAGTSPVIQALAIIIGTFILEDAATILTAMEVQT
GQIAIPVALVALYVGIVVGDLGLYGLGRLAALWPPARRWVAVPQDGNGQTWFGRNVFR
IVFVSRFIPGARLPLYTACGFFGASVGRFALAAVLATLIWTTLLFAVSLQVGHFLIDH
LGEWKWLGMGGFVLTIILVGRIVASVRSPSR"
misc_feature complement(27562..>27825)
/locus_tag="Gdia_0023"
/note="Uncharacterized membrane-associated protein
[Function unknown]; Region: DedA; COG0586"
/db_xref="CDD:30931"
gene 28394..29386
/locus_tag="Gdia_0024"
/db_xref="GeneID:6973413"
CDS 28394..29386
/locus_tag="Gdia_0024"
/note="TIGRFAM: lytic murein transglycosylase;
KEGG: gdi:GDI1795 putative membrane-bound lytic murein
transglycosylase B precursor"
/codon_start=1
/transl_table=11
/product="lytic murein transglycosylase"
/protein_id="YP_002274441.1"
/db_xref="GI:209542212"
/db_xref="InterPro:IPR006311"
/db_xref="InterPro:IPR011970"
/db_xref="GeneID:6973413"
/translation="MIRRRDFLMSASATCAAGGIGMAASARADSAPAASYAAFLAGVR
AEAVSHGLSAAIVDRALALEAPNARVLQLDQHQPEFTLTWAQYRQRVLTPKKVADGRV
AAGARRALLAEVGRHFGVDPQPLMGIWGLESAYGTRTGTFQIPDALATLAYDGRRASF
FRGELMNALRILDHGDVTPDSMTGSYAGAMGQPQFMPSAYLRYAVDYTGSGRRDIWTS
EPDVFASIANYLARCGWSAGEPWGQEISVPTRLAQADLGRGRVRTLADWMAQGVRRLD
GRRFSRPDISGAVIRPDGPGGEAFMVYRNFSVIRRYNPSDFYALAVGLLGHDVT"
sig_peptide 28394..28480
/locus_tag="Gdia_0024"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.984 at
residue 29"
misc_feature 28517..29371
/locus_tag="Gdia_0024"
/note="Transglycosylase SLT domain; Region: SLT_2;
pfam13406"
/db_xref="CDD:205584"
misc_feature 28937..>29116
/locus_tag="Gdia_0024"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature order(28979..28981,29078..29080)
/locus_tag="Gdia_0024"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
gene 29410..30249
/locus_tag="Gdia_0025"
/db_xref="GeneID:6973414"
CDS 29410..30249
/locus_tag="Gdia_0025"
/note="PFAM: Rare lipoprotein A; Sporulation domain
protein;
KEGG: gdi:GDI1796 putative rare lipoprotein A precursor"
/codon_start=1
/transl_table=11
/product="Rare lipoprotein A"
/protein_id="YP_002274442.1"
/db_xref="GI:209542213"
/db_xref="InterPro:IPR005132"
/db_xref="InterPro:IPR007730"
/db_xref="GeneID:6973414"
/translation="MAALGLLGCHRAEPGLPPAAPHYVVGAPYQMDGVWYYPHEDFSY
QATGLAVADPDRTPYVTADGEHYSPDALTGRHATLQLPAIVTVRNLENGREITIRVND
RGPDSPGRLIGLSPRAAALLGIGSNPVRVAVTGLEAQNEQLAEGLPGTQHLDIAAAPA
GQVRAESLDHPGSGATIVGAPGGTVGAADISALMGDLPPSVRQGYVVGGLLWVDAGTF
STLRYAELSAARTGGRVVPVQEHGRALWRVHVGPFMNATDADRALDQLMGAGVTGARI
VVE"
misc_feature 29590..29802
/locus_tag="Gdia_0025"
/note="Rare lipoprotein A (RlpA)-like double-psi
beta-barrel; Region: DPBB_1; pfam03330"
/db_xref="CDD:202595"
misc_feature 30043..30237
/locus_tag="Gdia_0025"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene 30279..31520
/locus_tag="Gdia_0026"
/db_xref="GeneID:6973415"
CDS 30279..31520
/locus_tag="Gdia_0026"
/EC_number="3.4.16.4"
/note="PFAM: peptidase S11 D-alanyl-D-alanine
carboxypeptidase 1; Penicillin-binding protein 5 domain
protein;
KEGG: gdi:GDI1797 putative penicillin-binding protein 5
precursor"
/codon_start=1
/transl_table=11
/product="serine-type D-Ala-D-Ala carboxypeptidase"
/protein_id="YP_002274443.1"
/db_xref="GI:209542214"
/db_xref="InterPro:IPR001967"
/db_xref="InterPro:IPR012907"
/db_xref="GeneID:6973415"
/translation="MAGTASLAATGSLAVAAPRRHHAHGAPSPQPAPTGGANAEDGTD
AADAAAPAGPPAATPIGPLDTVARWACILDVTTGSVLLEKAADERMPPSSLTKMMTAY
IVFGMLKSGRLKLDQMLPVSEKAWRMQGSKMFVPLGQSIAVQDLIQGMVIQSGNDACI
VLAEGVAGSEEQFVAQMNDMAARIGLSNSHFMNATGWPADNHYMSARDVAQLAVRLIR
DFPEYYHFFSEKDYRFNKISQGNRNVLVDKGLADGLKTGHTDAGGFGLCASADRGGNR
VVLSLNGMPSSNARAHEGERLLEWSFANFENATLFRKGDIVEQASVWLGTQPTVPLVA
TRDIVMTLPHGWRSRAHIGVDYQAPVAAPVAAGQVLGDLVISNPGLADIRMPLVAGQG
VPRLGLFARASAVLGQKLGRH"
sig_peptide 30279..30329
/locus_tag="Gdia_0026"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.883) with cleavage site probability 0.492 at
residue 17"
misc_feature 30477..31115
/locus_tag="Gdia_0026"
/note="D-alanyl-D-alanine carboxypeptidase; Region:
Peptidase_S11; pfam00768"
/db_xref="CDD:201433"
misc_feature 30534..>30935
/locus_tag="Gdia_0026"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
misc_feature 31191..31463
/locus_tag="Gdia_0026"
/note="Penicillin-binding protein 5, C-terminal domain;
Region: PBP5_C; smart00936"
/db_xref="CDD:198004"
gene 31526..32173
/locus_tag="Gdia_0027"
/db_xref="GeneID:6973416"
CDS 31526..32173
/locus_tag="Gdia_0027"
/EC_number="2.7.4.9"
/note="PFAM: thymidylate kinase;
KEGG: gdi:GDI1798 putative thymidylate kinase"
/codon_start=1
/transl_table=11
/product="dTMP kinase"
/protein_id="YP_002274444.1"
/db_xref="GI:209542215"
/db_xref="InterPro:IPR000062"
/db_xref="InterPro:IPR005829"
/db_xref="GeneID:6973416"
/translation="MAGLFITFEGGEGAGKSTQAQRLEAHLRAAGREVVRTREPGGTP
GAEALRQLLLFGGHDLSLRAEILAHFAARCDHVDQLIRPALARGAVVICDRFIDSTLA
YQGYGLGRADPGILHLIAVLGAQVGLAPDLTLVLMLERAGALARLRARGGPADRYEAA
DEAFHARVADGFDTIARAEAGRCVTIAADRPVDVVAGDIARLVDARLETDAPGAA"
misc_feature 31526..32149
/locus_tag="Gdia_0027"
/note="thymidylate kinase; Validated; Region: tmk;
PRK00698"
/db_xref="CDD:179089"
misc_feature 31535..32140
/locus_tag="Gdia_0027"
/note="Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor. TMPK
represents the rate-limiting step...; Region: TMPK;
cd01672"
/db_xref="CDD:30190"
misc_feature order(31574..31576,31730..31732,31742..31744,31805..31810,
31832..31834,31973..31975)
/locus_tag="Gdia_0027"
/note="TMP-binding site; other site"
/db_xref="CDD:30190"
misc_feature order(31577..31579,31961..31963,32087..32089)
/locus_tag="Gdia_0027"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30190"
gene 32154..33125
/locus_tag="Gdia_0028"
/db_xref="GeneID:6973417"
CDS 32154..33125
/locus_tag="Gdia_0028"
/EC_number="2.7.7.7"
/note="KEGG: gdi:GDI1799 putative DNA polymerase III
delta' subunit"
/codon_start=1
/transl_table=11
/product="DNA-directed DNA polymerase"
/protein_id="YP_002274445.1"
/db_xref="GI:209542216"
/db_xref="GeneID:6973417"
/translation="MPPAPRDAPDLVGQQEARRAFEDALRTGRLHHAWLLTGTEGIGK
ATMAFWMARLLLKGTDPDSPAARRIAAGSHADLLTIARGVDEKRQRLRAEIVADDVRP
IGQFLHRTAAEDGWRVVIVDGAEYMNRSAANAILKLLEEPPPRAILILTCATPGRLLP
TIRSRCRTLKLGPLSPADMHAVLSTVVEDAAPDDIARVVPLAHGSPGRALALLAGDGG
ALGALVARVMDAPAGPGAMREGEMYEIAEAVLKRENGFSVFFDLLCDAISVRTRAAVR
GTIPAERPADRMVDLWRRLVHLRAETEQFNLDKHQAILSGLTLVSGI"
misc_feature 32157..33116
/locus_tag="Gdia_0028"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK07471"
/db_xref="CDD:180989"
misc_feature 32184..32603
/locus_tag="Gdia_0028"
/note="AAA ATPase domain; Region: AAA_16; pfam13191"
/db_xref="CDD:205372"
misc_feature 32265..32288
/locus_tag="Gdia_0028"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(32268..32291,32517..32519,32610..32612)
/locus_tag="Gdia_0028"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature <32505..>32648
/locus_tag="Gdia_0028"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 32505..32522
/locus_tag="Gdia_0028"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 32646..32648
/locus_tag="Gdia_0028"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 33122..34660
/locus_tag="Gdia_0029"
/db_xref="GeneID:6973418"
CDS 33122..34660
/locus_tag="Gdia_0029"
/note="TIGRFAM: methionyl-tRNA synthetase;
PFAM: tRNA synthetase class I (M);
KEGG: gdi:GDI1800 methionyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA synthetase"
/protein_id="YP_002274446.1"
/db_xref="GI:209542217"
/db_xref="InterPro:IPR002304"
/db_xref="InterPro:IPR014758"
/db_xref="InterPro:IPR015413"
/db_xref="GeneID:6973418"
/translation="MTRRYYVTTPIYYVNGAPHIGHAYTSVAADIVARFKRLAGFDVF
FLTGTDEHGQKVEQAAQAAGLAPIAFADRVSADFRAMYDVMNVSYDDFIRTTEPRHIA
GATALWERIAANGHIYLGAYEGWYALRDESFYNEDELVTQPDGTRVAPTGAPVEWVRE
PSYFFRLSAFADRLLDLYETRPGFVEPASRRNEVASFVRQGLRDLSISRTSFRWGIPV
PGDADHVMYVWVDALANYLSAIGFPDARNPRAGFWPANLHLVGKDIVRFHAIYWPALL
MAAGLDLPDCVFSHGWWTIEGEKMSKSLGNVVDPRDLVAEFGLDPVRFFLMREMPFGG
DSDLSRKAIINRMNVELANDLGNLAQRTLSQVARNCGGLLPEQGTRTDDDIALLAQAD
LLPTLMHEQIDRRALTDALEEVWRVIRACNAYIDRQAPWALKKTDPDRMAVVLRVLVD
ALRGIGTMLQPYMPGSMDALLTQLGVAEDERDFASLATPLPGGRALPPPQGIFPRYVE
AEAQ"
misc_feature 33128..34648
/locus_tag="Gdia_0029"
/note="methionyl-tRNA synthetase; Reviewed; Region:
PRK11893"
/db_xref="CDD:183364"
misc_feature 33131..34132
/locus_tag="Gdia_0029"
/note="catalytic core domain of methioninyl-tRNA
synthetases; Region: MetRS_core; cd00814"
/db_xref="CDD:173907"
misc_feature order(33149..33154,33158..33160,33269..33271,33806..33808,
33815..33820,33827..33829,33911..33913,33923..33925)
/locus_tag="Gdia_0029"
/note="active site"
/db_xref="CDD:173907"
misc_feature 33176..33187
/locus_tag="Gdia_0029"
/note="HIGH motif; other site"
/db_xref="CDD:173907"
misc_feature 34016..34030
/locus_tag="Gdia_0029"
/note="KMSKS motif; other site"
/db_xref="CDD:173907"
misc_feature 34163..34543
/locus_tag="Gdia_0029"
/note="Anticodon-binding domain of methionyl tRNA
synthetases; Region: Anticodon_Ia_Met; cd07957"
/db_xref="CDD:153411"
misc_feature order(34163..34165,34184..34189,34196..34201,34208..34213,
34220..34225,34232..34237,34385..34390,34394..34399,
34412..34414)
/locus_tag="Gdia_0029"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153411"
misc_feature order(34184..34186,34196..34201,34208..34213,34220..34225,
34232..34237,34394..34396,34412..34414)
/locus_tag="Gdia_0029"
/note="anticodon binding site; other site"
/db_xref="CDD:153411"
gene 34657..35448
/locus_tag="Gdia_0030"
/db_xref="GeneID:6973419"
CDS 34657..35448
/locus_tag="Gdia_0030"
/note="TIGRFAM: hydrolase, TatD family;
PFAM: TatD-related deoxyribonuclease;
KEGG: gdi:GDI1801 putative deoxyribonuclease"
/codon_start=1
/transl_table=11
/product="TatD family hydrolase"
/protein_id="YP_002274447.1"
/db_xref="GI:209542218"
/db_xref="InterPro:IPR001130"
/db_xref="InterPro:IPR015991"
/db_xref="GeneID:6973419"
/translation="MTGLIDSHCHLDHFTDDEIPDLLDRARQAGVEGMVTIGTRLSRA
AQQKDLTRFSRPDLRVWCTVGTHPDHVDECTVADAAGIVALADDPRVVGIGETGLDYF
HGAESVRPLQQARFRAHIAAARQMDLPLVIHARDADEDVAEILRDEVESHGPFRFLLH
CFASGPDLARVGLELGGYVSFSGILTFPKSDALRAVARDIPQDRLLVETDSPYLAPVP
QRGRKNEPGFVAHTARRLAEVRDMTPESLAEVTTANFHRLFSRAA"
misc_feature 34666..35436
/locus_tag="Gdia_0030"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:30053"
misc_feature order(34678..34680,34684..34686,35053..35055,35134..35136,
35284..35286)
/locus_tag="Gdia_0030"
/note="active site"
/db_xref="CDD:30053"
gene 35452..36240
/locus_tag="Gdia_0031"
/db_xref="GeneID:6973420"
CDS 35452..36240
/locus_tag="Gdia_0031"
/note="PFAM: beta-lactamase domain protein;
KEGG: gdi:GDI1802 putative beta-lactamase-like"
/codon_start=1
/transl_table=11
/product="beta-lactamase domain-containing protein"
/protein_id="YP_002274448.1"
/db_xref="GI:209542219"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:6973420"
/translation="MELIVLGCGGSAGVPMIGGPDGAGDWGVCDPAEPRNRRTRASVL
LRGGDGAVLLDTGPDLRDQLLAQRIDRFDAILYTHAHADHIAGLDEVRAINRVIDRPL
PVYGTPPVLTDLENRFNYAFRPWSPPGFYRPVVVPHVVHAGQTLEVAGLHLRLFEQIH
GRTLSLGVRCGTIAYSTDVVELPDEAFAALAGIETWVVDCFQRSAAHSAHAWLDRVLE
WRARIAPRRVILTHMGPDMDWAWMRANLPDGVEAAFDGMRVAFH"
misc_feature 35452..36234
/locus_tag="Gdia_0031"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; cl00446"
/db_xref="CDD:207049"
misc_feature 35578..>35922
/locus_tag="Gdia_0031"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
gene 36640..38586
/locus_tag="Gdia_0032"
/db_xref="GeneID:6973421"
CDS 36640..38586
/locus_tag="Gdia_0032"
/note="PFAM: PrkA serine kinase; PrkA AAA domain protein;
KEGG: gdi:GDI1803 PrkA serine protein kinase"
/codon_start=1
/transl_table=11
/product="putative serine protein kinase PrkA"
/protein_id="YP_002274449.1"
/db_xref="GI:209542220"
/db_xref="InterPro:IPR010650"
/db_xref="InterPro:IPR013153"
/db_xref="GeneID:6973421"
/translation="MVSDINVFSLATAMRDQRREVEMSLSDYLEQCRTDPSCYATAAE
RMLKAIGEPRTVDTSRDPRLSRIFMNRTLRIYPAFSDFYGMEETIEQIVGFFRHAAQG
LEERKQILYLLGPVGGGKSSLGERLKALMEKEPIYVLKAGRHISPVFESPLGVFDPDR
MAGVLEERYGIPRRLLGGVASPWALKRLEEFDGDLSRFSVVKLHPSRLRQIAIAKTEP
GDDNNQDVSALVGKVDIRQLEHFSQNDPDAYSFSGGLNRANQGLLEFVEMFKAPIKML
HPLLTATQEGNYVGTENIGSIPFTGVILAHSNEAEWQTFRNNRTNEAFLDRVCVIKVP
YCLRVTEETRIYEKLVQSSSLAEAPCAPNTLEMLARFAVLSRLKPHPNSAQFAKMRVY
DGENIRETDPKARTMQEYRDAAGVDEGMDGISTRFAYKVLSATFNHDSAEISADPVHL
MYVLEQAVRREQFPPEVEATYLATLKSELAGRYAEFLGHEIQKAYLESYNDYGQNLFD
RYLDYADAWIEDQDFKDPDTGQMLNRELLNAELTKIEKPAGIANPKDFRNEVVKFSLR
ARAGNGGRNPSWTSYEKIRDVIEKRMFSQVEDLLPVISFGSKKDGETERKHDEFVERM
VSRGYTERQVRRLVEWYMRVKQSA"
misc_feature 36655..38580
/locus_tag="Gdia_0032"
/note="PrkA family serine protein kinase; Provisional;
Region: PRK15455"
/db_xref="CDD:185352"
misc_feature 36883..>37230
/locus_tag="Gdia_0032"
/note="AAA ATPase domain; Region: AAA_16; pfam13191"
/db_xref="CDD:205372"
misc_feature 37801..38559
/locus_tag="Gdia_0032"
/note="PrkA serine protein kinase C-terminal domain;
Region: PrkA; pfam06798"
/db_xref="CDD:148418"
gene 38606..39913
/locus_tag="Gdia_0033"
/db_xref="GeneID:6973422"
CDS 38606..39913
/locus_tag="Gdia_0033"
/note="PFAM: protein of unknown function DUF444;
KEGG: gdi:GDI1804 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274450.1"
/db_xref="GI:209542221"
/db_xref="InterPro:IPR006698"
/db_xref="GeneID:6973422"
/translation="MDIIDRRPNPHGKNIENRRRVLQRARAAVQKAVRDSVARGKIRE
VGQGNAVSIPSDALHEPTFHRVFSEGVREIVLTGNREFSRGDRLQRPPGGVGQGGGGE
GQGGEKGGGEDSFRFVLSRDEFLDLFFDDLELPDLVKREIAATETSKPTRSGLSNEGA
PSHLDLGRTMRRSIARRIGLGRPKPDDLREIEARIAELEDRRPLGTEDLDELESLCER
RGTLRQRLARIPWVDPVDLRFRRYTVVPQPATRAVMFCIMDVSGSMTERMKDLAKQFF
LLLHVFLERRYKKVEIVFIRHAESAEEVDEETFFHDPRTGGTIVSSALELMSSIQRER
FPSGSWNIYVAQASDGDNASSDTTRTASLLRDEILPAVQYYAYIEITGSGAVIRGETD
LWRSYRTIADENDHLAIRQVGDRKEIFPVFRELFSRQHDTAEA"
misc_feature 38615..39904
/locus_tag="Gdia_0033"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2718"
/db_xref="CDD:32611"
misc_feature 39356..39706
/locus_tag="Gdia_0033"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cd00198"
/db_xref="CDD:29222"
misc_feature order(39380..39382,39557..39559,39650..39652)
/locus_tag="Gdia_0033"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29222"
gene 39913..41481
/locus_tag="Gdia_0034"
/db_xref="GeneID:6973423"
CDS 39913..41481
/locus_tag="Gdia_0034"
/note="PFAM: SpoVR family protein;
KEGG: gdi:GDI1805 putative stage V sporulation protein R"
/codon_start=1
/transl_table=11
/product="SpoVR family protein"
/protein_id="YP_002274451.1"
/db_xref="GI:209542222"
/db_xref="InterPro:IPR007390"
/db_xref="GeneID:6973423"
/translation="MNQITPKGGGDGGGARPGGLLYSGNDWNFQILRDCYDAIAEIAD
KELGLELYANRIEIITSEQMLDVYTSHGMPLGYKHWSFGKRFIGHENAYRRGLMGLAY
EVVINSDPCINYLMEENSATMQALVIAHAAFGHNHFFRNNRLFREWTDPSEILDYLEF
ARGFIARCEERHGVRAVERILDAAHALQNQGVHRHSGARKLDLKAEQQRARERRAYED
SMFNDLWRTLPTEPAGEEGQAEGALARRLLGLPEENLLYFLEKNAPRLASWEREIIRI
VRMVAQYFYPQPQVKMMNEGCATWVHSYIMRRLHELGRIDDAAYLEVIHSTSNVISQP
GFDAGGGPSFNPYALGYAMMTDIARICETPTEEDRTWFPDIAGNGDPIGTLRHAWAEY
RDESFIQQFLSPKVIRDFRMFRLRDDTSQPYLLVDAIHDEAGYRDIRRSVALTYDPGT
FYTEIEIVDVDLLGDRTLVLEHRSRTGQMLQPGDARQTLDYLALLWGYGVILKEIDSQ
TGTVVTTHSAKPSA"
misc_feature 39970..41472
/locus_tag="Gdia_0034"
/note="SpoVR family protein; Provisional; Region:
PRK11767"
/db_xref="CDD:183304"
misc_feature 39982..41472
/locus_tag="Gdia_0034"
/note="Uncharacterized conserved protein [Function
unknown]; Region: SpoVR; COG2719"
/db_xref="CDD:32612"
gene 41667..42893
/locus_tag="Gdia_0035"
/db_xref="GeneID:6973424"
CDS 41667..42893
/locus_tag="Gdia_0035"
/EC_number="1.4.99.3"
/note="PFAM: methylamine dehydrogenase heavy subunit;
KEGG: gdi:GDI1806 putative methylamine dehydrogenase heavy
chain precursor"
/codon_start=1
/transl_table=11
/product="amine dehydrogenase"
/protein_id="YP_002274452.1"
/db_xref="GI:209542223"
/db_xref="InterPro:IPR009451"
/db_xref="GeneID:6973424"
/translation="MPSERRYGAIRPLAAPLTVAALLGAAILQPLVPPSGARAAEPIL
QTEESDIVTLPPGGPHRVLVQDGVYRHSKDGRVYVVDLDSGKLLGMVQAAYNANVAAD
PAGRTFYVAETAWERGNRGRRHDMLVAYNPLTLEPTLDIDLPSRALITPKKADMAVSA
DGHYVYVYDTSPTNSVHVFDAARKDVVRTVDVPGCALVYPWGGAGFSSICGDGSLANV
ALDKTATPSLTHTAPFFVPDRDPVFEHSPQVAASGHVWFISYSGLVYDTTLGPQSKIG
APWSIQAAAGLKPASDARAPFAVTWRPGGWQLAAVRARDSHLFILMHRGPFWTHKDAG
TELWELDLKTRKLVRRIHLAAPSMMVGVTQDAASRIMLTDEAGDLTVLDGATGAPVRT
IRNLGEALIFTVAPGE"
sig_peptide 41667..41786
/locus_tag="Gdia_0035"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.967) with cleavage site probability 0.949 at
residue 40"
misc_feature 41847..42875
/locus_tag="Gdia_0035"
/note="Methylamine dehydrogenase heavy chain (MADH);
Region: Me-amine-dh_H; pfam06433"
/db_xref="CDD:115110"
gene 42890..43474
/locus_tag="Gdia_0036"
/db_xref="GeneID:6973425"
CDS 42890..43474
/locus_tag="Gdia_0036"
/EC_number="1.4.99.3"
/note="KEGG: gdi:GDI1807 putative methylamine
dehydrogenase light chain precursor;
TIGRFAM: methylamine dehydrogenase light chain;
PFAM: methylamine dehydrogenase light chain domain
protein"
/codon_start=1
/transl_table=11
/product="methylamine dehydrogenase light chain"
/protein_id="YP_002274453.1"
/db_xref="GI:209542224"
/db_xref="InterPro:IPR004229"
/db_xref="InterPro:IPR013504"
/db_xref="GeneID:6973425"
/translation="MTRVTETRNDMERNGFDRLTERLARYLAGRSSRRGALARLGGWA
ASVPLFPLLPVWRGDARAADAPAAPSAAPSPFAAKAQAKDDTKCDYWRYCAIDGNLCT
TCGGGVHSCPPGTHPSPTSWIGTCFNPQDRRSYLIAYRDCCGQDACNEQNCLGTDGDL
PTYRPQANNDIIWCFGTGSLLYNCSTAAIVGTAE"
misc_feature 42932..43468
/locus_tag="Gdia_0036"
/note="Methylamine dehydrogenase, L chain; Region:
Me-amine-dh_L; cl03812"
/db_xref="CDD:208047"
gene 43471..43932
/locus_tag="Gdia_0037"
/db_xref="GeneID:6973426"
CDS 43471..43932
/locus_tag="Gdia_0037"
/note="PFAM: cytochrome c class I;
KEGG: gdi:GDI1808 putative cytochrome c-552"
/codon_start=1
/transl_table=11
/product="cytochrome c class I"
/protein_id="YP_002274454.1"
/db_xref="GI:209542225"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:6973426"
/translation="MKKILTLAATLSLAGATTAFAAPDGQALYGANCGICHQGGGVGA
PGQFPPLANRIDKIASTPEGKKYVTQVLVNGLAGSIQAGGATYVGFMPSFKSLPDDQI
AAILTYLSSLGSTKPAPVFAAADLAAARAAPMSSSAVAAARKTLNAAHPLP"
sig_peptide 43471..43536
/locus_tag="Gdia_0037"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.999 at
residue 22"
misc_feature 43540..43806
/locus_tag="Gdia_0037"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene 43910..44410
/locus_tag="Gdia_0038"
/db_xref="GeneID:6973427"
CDS 43910..44410
/locus_tag="Gdia_0038"
/note="KEGG: gdi:GDI1809 putative cytochrome c-552"
/codon_start=1
/transl_table=11
/product="putative cytochrome c-552"
/protein_id="YP_002274455.1"
/db_xref="GI:209542226"
/db_xref="GeneID:6973427"
/translation="MRRIPFRKSVWPVIAVLAVAGLLPPGPAARALDRTRTTYLTKCG
GCHGIEGQSGQTYIPTLRDRIGVLTCTAEGRSYLLEVPGVSMSLIRDDALMAQVMNFV
LFDLGGASTPRGTAPFTAREIHALRGHPLDTTDLPTVRAAVWARATAACAAQAGGHSG
GRSGTY"
sig_peptide 43910..44005
/locus_tag="Gdia_0038"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.919 at
residue 32"
misc_feature 44018..44218
/locus_tag="Gdia_0038"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:142619"
gene complement(44415..45011)
/locus_tag="Gdia_0039"
/db_xref="GeneID:6973428"
CDS complement(44415..45011)
/locus_tag="Gdia_0039"
/note="PFAM: nucleoside 2-deoxyribosyltransferase;
KEGG: gdi:GDI1810 putative nucleoside
2-deoxyribosyltransferase"
/codon_start=1
/transl_table=11
/product="nucleoside 2-deoxyribosyltransferase"
/protein_id="YP_002274456.1"
/db_xref="GI:209542227"
/db_xref="InterPro:IPR007710"
/db_xref="GeneID:6973428"
/translation="MGTNKTVYLAGDLVFRPGAIAIFDRLRVLCRAAGVEGVAPFDGQ
AGIESLPPGPETMLKIVMADRALMDRCAGGIFCIDPFRRAADMDPGTAVEIGYMMAQG
KPLAGYTTDGRPYPEKVRAYRRAAWGDDLRPRVTHDAPVGSGAVEDSDGILAHSEGML
QNGMVEGFIHLSGGHVAVRDDLFDAFRIAIAELARRLP"
misc_feature complement(44427..45011)
/locus_tag="Gdia_0039"
/note="Nucleoside 2-deoxyribosyltransferase [Nucleotide
transport and metabolism]; Region: COG3613"
/db_xref="CDD:33412"
gene 45162..46664
/locus_tag="Gdia_0040"
/db_xref="GeneID:6973429"
CDS 45162..46664
/locus_tag="Gdia_0040"
/EC_number="1.1.1.37"
/note="KEGG: gdi:GDI1811 inosine-5'-monophosphate
dehydrogenase;
TIGRFAM: inosine-5'-monophosphate dehydrogenase;
PFAM: CBS domain containing protein; IMP dehydrogenase/GMP
reductase"
/codon_start=1
/transl_table=11
/product="inosine-5'-monophosphate dehydrogenase"
/protein_id="YP_002274457.1"
/db_xref="GI:209542228"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR001093"
/db_xref="InterPro:IPR005990"
/db_xref="InterPro:IPR015875"
/db_xref="GeneID:6973429"
/translation="MSSPHNPLSHPRVDDRIREALAFDDVLVVPAESNVLPGQTSTKS
RLTRRIGLNIPLISSAMDTVTEDAMAIAMAQQGGMGVIHKNLSVEEQAEQVRRVKRFE
SGMVVNPVTVWPDQTLADVNAIMSRHGISGLPVIERETKRLVGMLTNRDVRFATDPAL
RVDSLMTRENLVTVGADVGHDQARQLLHRHRIEKLLVVDDEGRCVGLITVKDIEKAVL
HPLANKDEMGRLRCAAATGVGEDGFTRARALIEAGVDVVVVDTAHGHSSGVLDTVARV
KAVDDRIQVVAGNVATPEAAVALIEAGADCVKIGIGPGSICTTRVVAGVGVPQFSAVL
ETSAACHELDVPAIADGGIRTSGDIVKAIGAGADVVMIGSLLAGTEEAPGEVFLYEGR
SYKSYRGMGSLGAMARGSADRYFQQEIKETHKMVPEGIEGRVAYKGGMDAVVHQLVGG
LRAGMGYTGSATIADLQVRARFRRITGAGLRESHVHDVAITREAPNYRRD"
misc_feature 45210..46655
/locus_tag="Gdia_0040"
/note="inosine 5'-monophosphate dehydrogenase; Reviewed;
Region: PRK05567"
/db_xref="CDD:180134"
misc_feature 45219..>45458
/locus_tag="Gdia_0040"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl09108"
/db_xref="CDD:213114"
misc_feature 45477..45809
/locus_tag="Gdia_0040"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains in the
inosine 5' monophosphate dehydrogenase (IMPDH) protein.
IMPDH is an essential enzyme that catalyzes the first step
unique to GTP synthesis, playing a key...; Region:
CBS_pair_IMPDH; cd04601"
/db_xref="CDD:73101"
misc_feature <45843..46586
/locus_tag="Gdia_0040"
/note="IMPDH: The catalytic domain of the inosine
monophosphate dehydrogenase. IMPDH catalyzes the
NAD-dependent oxidation of inosine 5'-monophosphate (IMP)
to xanthosine 5' monophosphate (XMP). It is a
rate-limiting step in the de novo synthesis of the
guanine...; Region: IMPDH; cd00381"
/db_xref="CDD:73364"
misc_feature order(46104..46112,46209..46211,46215..46217,46278..46283,
46350..46352,46356..46364,46443..46448)
/locus_tag="Gdia_0040"
/note="active site"
/db_xref="CDD:73364"
gene 46675..47964
/locus_tag="Gdia_0041"
/db_xref="GeneID:6973430"
CDS 46675..47964
/locus_tag="Gdia_0041"
/note="PFAM: Fmu (Sun) domain protein;
KEGG: gdi:GDI1812 putative ribosomal RNA small subunit
methyltransferase B"
/codon_start=1
/transl_table=11
/product="Fmu (Sun) domain-containing protein"
/protein_id="YP_002274458.1"
/db_xref="GI:209542229"
/db_xref="InterPro:IPR001678"
/db_xref="InterPro:IPR006174"
/db_xref="GeneID:6973430"
/translation="MTPSARLAAAIDLLSAMEATPRRPADAVANAFFRERRYIGGGDR
RAISARVWTVLRHWRHLAWWLDRAGAAATPRARLIAALALMPQPGEAPQDLFVSQDRY
APQPLSAAERDLATRLRGQAMVHPDMPRAVRLEVPDWLLPRLEETFGADLDAEVAALA
GEATLDLRVNLLKTTRAEAARLLAADGIMAEPTGLSPWGLRVPGRQPVTATAAFKSGL
VEIQDEGSQIVVAAADARPGMRVLDYCAGAAGKTLGMAMTMENRGHIVACDVSEPRLE
GAVRRLRRAGVHNAERHLLVPGDRWARRRAASFDRVLVDAPCTGTGTWRRNPDARLRL
TEQDLAELMAKQADILATASALVRPGGRLVYATCSILREENQDRIASFLRASPHFRRA
ETVPDLAPDLAQDGMIALSPLRHGTDGFFAAILERTA"
misc_feature 47140..47949
/locus_tag="Gdia_0041"
/note="NOL1/NOP2/sun family; Region: Nol1_Nop2_Fmu;
pfam01189"
/db_xref="CDD:201649"
misc_feature 47392..47769
/locus_tag="Gdia_0041"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(47404..47424,47479..47484,47560..47568,47617..47619)
/locus_tag="Gdia_0041"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 48081..49904
/locus_tag="Gdia_0042"
/db_xref="GeneID:6973431"
CDS 48081..49904
/locus_tag="Gdia_0042"
/note="PFAM: sodium/hydrogen exchanger;
KEGG: gdi:GDI1813 putative cell volume regulation protein
A"
/codon_start=1
/transl_table=11
/product="sodium/hydrogen exchanger"
/protein_id="YP_002274459.1"
/db_xref="GI:209542230"
/db_xref="InterPro:IPR006153"
/db_xref="GeneID:6973431"
/translation="MQDNLAIGILCVLGGGIGAQWVAWRFRLPAIVLLFALGLLYGPG
LNLLHPSAAIGGYFHPIVSLAVAFIVFEGGLGLDFRQWRAAGEGVLRLTVVALPINWI
LGALAAHFVGHLHWGASWLFGAIIVVTGPTVVLPLLRHTKLRPRVAAFLRWEAILNDP
VGAILATLVLEFLMIQGNRHSGMFMAEIVPHLLFATMMALGCGVFPAVLVRFLSTRDL
IPEILRIPIILTLAMSVFAVCNFVMEGAGLMAATVFGMALTNMHVIGMSELRRIKESL
GVLVVSCLFVMLTADLHRAVLERLSLPIVAMTLTVLFVVRPVGILLSTIRANLSWQER
LFVGWIAPRGIVAAAVAGVAGLQLQEAGYPSADLVTPGVFALIATTMILHGFSLRPLA
RALRLTLSDEPALAIVGASAWSTDLAGVLHRLGCPVMLVDTYTGALAPASRAGIPILK
AELLSDEGLESLEERPADYLIAATPDAIYNGLVCARLAPDFGRQRVFQVSPGVARLDL
YRGLSRDSRGRVLGDPAWNFTLFDTLFERGWRFRSIPFAPPPAGGAAGGTPPPGEPLA
EGNRLMIMTVRKGVAIWIRSAEDEVPVEPLAGDTIIIMSPP"
misc_feature 48135..49241
/locus_tag="Gdia_0042"
/note="NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism]; Region: NhaP; COG0025"
/db_xref="CDD:30375"
gene complement(50073..50585)
/locus_tag="Gdia_0043"
/db_xref="GeneID:6973432"
CDS complement(50073..50585)
/locus_tag="Gdia_0043"
/note="KEGG: gdi:GDI1814 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274460.1"
/db_xref="GI:209542231"
/db_xref="GeneID:6973432"
/translation="MIRAVLKTNTGQDAQLHCMGERIPALIGAAGIRALKQEGDHATP
TGLLPLRRVLYRADRVPPPACRLPVEPLAPGDGWCDDPAHADYNRPVTLPHPARHERL
WRDDDVYNIVIVLGYNDAPPVPGRGSAIFLHLQSPDGRPTEGCIALRESDLRRLLAAG
LTEIEVPEPG"
misc_feature complement(50109..>50519)
/locus_tag="Gdia_0043"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
cl15405"
/db_xref="CDD:210099"
gene 50772..51488
/locus_tag="Gdia_0044"
/db_xref="GeneID:6973433"
CDS 50772..51488
/locus_tag="Gdia_0044"
/note="PFAM: response regulator receiver; transcriptional
regulator domain protein;
KEGG: gdi:GDI1815 putative DNA-binding response regulator
MtrA"
/codon_start=1
/transl_table=11
/product="winged helix family two component
transcriptional regulator"
/protein_id="YP_002274461.1"
/db_xref="GI:209542232"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR001867"
/db_xref="GeneID:6973433"
/translation="MAGARPILIVDDDQTLRHMLVEQLQLEGEFQAIEADSVADAWDK
LNAPGARFDAIILDVTLPDGDGRDFCAELRRQGKRIPIIILTGSDDETDVVRGLDAGA
NDYVAKPFRIAELLARLRAQMRIFENSEDAVFSIGPYVFRPSAKLLQEPTRNRRIRLT
EKEAAILKFLYRAGTRPVPRQVLLNEVWGYNAAVTTHTLETHIYRLRQKIEPDPTNAS
LLVTEGGGYRLDPEGGMRIA"
misc_feature 50790..51470
/locus_tag="Gdia_0044"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 50793..51140
/locus_tag="Gdia_0044"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(50802..50807,50943..50945,50967..50969,51027..51029,
51084..51086,51093..51098)
/locus_tag="Gdia_0044"
/note="active site"
/db_xref="CDD:29071"
misc_feature 50943..50945
/locus_tag="Gdia_0044"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(50952..50957,50961..50969)
/locus_tag="Gdia_0044"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 51093..51101
/locus_tag="Gdia_0044"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 51171..51458
/locus_tag="Gdia_0044"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(51249..51251,51306..51311,51363..51365,51372..51374,
51396..51401,51435..51437,51447..51449)
/locus_tag="Gdia_0044"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(51623..52435)
/locus_tag="Gdia_0045"
/db_xref="GeneID:6973434"
CDS complement(51623..52435)
/locus_tag="Gdia_0045"
/note="TIGRFAM: exodeoxyribonuclease III Xth;
PFAM: Endonuclease/exonuclease/phosphatase;
KEGG: gdi:GDI1816 putative exodeoxyribonuclease III
protein"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease III Xth"
/protein_id="YP_002274462.1"
/db_xref="GI:209542233"
/db_xref="InterPro:IPR000097"
/db_xref="InterPro:IPR004808"
/db_xref="InterPro:IPR005135"
/db_xref="GeneID:6973434"
/translation="MIGNATHMRIVTWNINSLRLRLPLLARLGAELRPDIICLQETKV
PDDLFPADAIRDLGYVHIQHRGMKSYNGVAILSRVPLTPLDDTPDWCARSDCRHIAAS
FPMGGRPVELHNFYVPAGGDIPDPDANPKFAHKLAFVDEATSWFTGRTSHRTILVGDL
NIAPLEQDVWSHKQLLNVVSHTPPEVTRLMAWQACGFVDAMRHFVPPDEKLYTWWSYR
NRDWKASNRGRRLDHVWITPDLTAALKDMTVLREARDWPTTSDHVPVAMDFA"
misc_feature complement(51629..52414)
/locus_tag="Gdia_0045"
/note="Escherichia coli exonuclease III (ExoIII) and
Neisseria meningitides NExo-like subfamily of the ExoIII
family purinic/apyrimidinic (AP) endonucleases; Region:
ExoIII-like_AP-endo; cd09086"
/db_xref="CDD:197320"
misc_feature complement(order(51650..51652,51953..51955,51959..51961,
52079..52081,52088..52090,52313..52315,52394..52396))
/locus_tag="Gdia_0045"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197320"
misc_feature complement(order(51650..51655,51740..51742,51953..51955,
51959..51961,52088..52090,52313..52315,52394..52396))
/locus_tag="Gdia_0045"
/note="putative catalytic site [active]"
/db_xref="CDD:197320"
misc_feature complement(order(51650..51652,51659..51664,51740..51745,
51749..51751,51782..51787,51794..51796,51953..51955,
51959..51961,52043..52045,52073..52075,52079..52081,
52088..52090,52229..52234,52313..52315,52373..52381,
52385..52390))
/locus_tag="Gdia_0045"
/note="active site"
/db_xref="CDD:197320"
misc_feature complement(order(51650..51655,52313..52315,52388..52390))
/locus_tag="Gdia_0045"
/note="metal binding site A [ion binding]; metal-binding
site"
/db_xref="CDD:197320"
misc_feature complement(order(51659..51664,51782..51787,52043..52045,
52073..52075,52079..52081,52088..52090,52229..52234,
52373..52381,52385..52390))
/locus_tag="Gdia_0045"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:197320"
misc_feature complement(order(51650..51652,51743..51745,51749..51751,
51794..51796,51953..51955,51959..51961,52079..52081,
52088..52090))
/locus_tag="Gdia_0045"
/note="putative AP binding site [nucleotide binding];
other site"
/db_xref="CDD:197320"
misc_feature complement(order(51650..51652,51953..51955,51959..51961,
52088..52090))
/locus_tag="Gdia_0045"
/note="putative metal binding site B [ion binding]; other
site"
/db_xref="CDD:197320"
gene 52770..54659
/gene="uvrC"
/locus_tag="Gdia_0046"
/db_xref="GeneID:6973435"
CDS 52770..54659
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. UvrC both incises the 5'
and 3' sides of the lesion. The N-terminal half is
responsible for the 3' incision and the C-terminal half is
responsible for the 5' incision"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit C"
/protein_id="YP_002274463.1"
/db_xref="GI:209542234"
/db_xref="InterPro:IPR000305"
/db_xref="InterPro:IPR001162"
/db_xref="InterPro:IPR001943"
/db_xref="InterPro:IPR004791"
/db_xref="GeneID:6973435"
/translation="MDADVVPASSVKGVEAILLALQTMPLSPGVYRMLGEKGEVLYVG
KARILKRRVTSYTHLSKLPERLRRMVSETVTMEIVTTHTEAEALLLEANYIKRMKPRF
NILLRDDKSYPWIMLTDGAEFPQVTKHRGKPVKGASYWGPFASAWAVNQTLNLIQRVF
LLRTCSDSVFASRTRPCLLFQIKRCSAPCVARIGQAEYAHLVEQARAFLSGQRGGIRE
ELVREMEAAAASLEFERAATIRDRIRGFAAMQDSSVINPASLDDADIVAIAQAAGHSC
IQVFFIRGGRNNGNRAFFPAHARDEAAPDIVGAFLAQFYDDKPPPAQILLNCEIAEHD
LMADALGIKRGRKVEILVPKRGEKRAVVEHAETNAREALERKLAESTAQARLLEGMAD
LFGLDAPPRRIEIYDNSHIMGTNAYGVMVVAGPEGFDKRSYRKFSIRGPITPGDDFAM
MREVLERRFSRALRERDDSAGASSPADWPDIVLIDGGAGQYSAVRAVLDELGVTDVTL
VAIAKGPDRDAGREWFHMADRPPFQLPPRDPVLYYLQRLRDEAHRFAITTHRAGRSKA
LVKSELDEIPGVGAARKRALLNQFGSARGVRQAGLAELEATQGINRETARVVYGHFHP
GWTGA"
misc_feature 52812..54644
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="excinuclease ABC subunit C; Validated; Region:
uvrC; PRK00558"
/db_xref="CDD:179065"
misc_feature 52839..53081
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="Catalytic GIY-YIG domain of nucleotide excision
repair endonucleases UvrC, Cho, and similar proteins;
Region: GIY-YIG_UvrC_Cho; cd10434"
/db_xref="CDD:198381"
misc_feature order(52854..52862,52893..52901)
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198381"
misc_feature order(52860..52862,52893..52895,52899..52904,52923..52925,
52935..52937,53040..53042,53076..53078)
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="active site"
/db_xref="CDD:198381"
misc_feature order(52893..52895,52923..52925,53040..53042)
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="catalytic site [active]"
/db_xref="CDD:198381"
misc_feature order(52893..52895,52923..52925,53040..53042)
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:198381"
misc_feature 53040..53042
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198381"
misc_feature 53937..54437
/gene="uvrC"
/locus_tag="Gdia_0046"
/note="UvrC Helix-hairpin-helix N-terminal; Region:
UvrC_HhH_N; pfam08459"
/db_xref="CDD:203951"
gene 54767..55363
/locus_tag="Gdia_0047"
/db_xref="GeneID:6973436"
CDS 54767..55363
/locus_tag="Gdia_0047"
/note="TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate
3-phosphatidyltransferase;
PFAM: CDP-alcohol phosphatidyltransferase;
KEGG: gdi:GDI1819 putative
CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol/glycerol-3-phosphate
3-phosphatidyltransferase"
/protein_id="YP_002274464.1"
/db_xref="GI:209542235"
/db_xref="InterPro:IPR000462"
/db_xref="InterPro:IPR004570"
/db_xref="GeneID:6973436"
/translation="MLTDLPNILTLSRIVAIPVLVALVAIGAPVTDCAACLLFIAAGI
TDYLDGKLARAWHQYSDLGRMLDPIADKLLVGASLMMLAGCDRLPFGSLYPAIIILAR
EILISGLREFLASTRISLPVTRLAKWKTGIQMTAIGFLLAGDSTGRLLHLEWMHVGTV
GAVLLWIAAALTVLTGWDYLLTGLRHVGRNGGVSKIAP"
misc_feature 54779..55309
/locus_tag="Gdia_0047"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 55381..55992
/locus_tag="Gdia_0048"
/db_xref="GeneID:6973437"
CDS 55381..55992
/locus_tag="Gdia_0048"
/note="KEGG: gdi:GDI1820 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274465.1"
/db_xref="GI:209542236"
/db_xref="GeneID:6973437"
/translation="MLLEVAVRNGQTSSCRRTGLPRGRGTMRRTAVLSWLVLPLLVPQ
AGCAGFGKLMADDATFPGANPNMPVGDAENLRRARGEAASDQPILPQGGNMWPGPPAP
LPTLGDASREHAGPDDGLPADATGSELPEGGTLSAGEQAEIRGGVQGISGTPPAVVHD
DSARYRSGQAASTIVIPNGDGTSTIIAPDGTVKTVKDPPTVPR"
gene 56012..56269
/locus_tag="Gdia_0049"
/db_xref="GeneID:6973438"
CDS 56012..56269
/locus_tag="Gdia_0049"
/note="TIGRFAM: molybdopterin converting factor, subunit
1;
PFAM: thiamineS protein;
KEGG: gdi:GDI1821 putative molybdopterin-converting factor
subunit 1"
/codon_start=1
/transl_table=11
/product="molybdopterin converting factor subunit 1"
/protein_id="YP_002274466.1"
/db_xref="GI:209542237"
/db_xref="InterPro:IPR003749"
/db_xref="InterPro:IPR010034"
/db_xref="GeneID:6973438"
/translation="MVTILYFAWLRDRLGRSGESIALPEGGCSVGELMQRLSVRDAAY
GQVFGPDGGPIRCAVNQEFASHADHVGPGDELAFFPPVTGG"
misc_feature 56015..56266
/locus_tag="Gdia_0049"
/note="Ubiquitin domain of MoaD-like proteins; Region:
MoaD; cd00754"
/db_xref="CDD:176354"
misc_feature order(56030..56038,56042..56047,56189..56191,56234..56236,
56249..56257,56264..56266)
/locus_tag="Gdia_0049"
/note="MoaE interaction surface [polypeptide binding];
other site"
/db_xref="CDD:176354"
misc_feature order(56030..56035,56042..56047,56249..56251,56255..56257,
56264..56266)
/locus_tag="Gdia_0049"
/note="MoeB interaction surface [polypeptide binding];
other site"
/db_xref="CDD:176354"
misc_feature 56264..56266
/locus_tag="Gdia_0049"
/note="thiocarboxylated glycine; other site"
/db_xref="CDD:176354"
gene 56273..56731
/locus_tag="Gdia_0050"
/db_xref="GeneID:6973439"
CDS 56273..56731
/locus_tag="Gdia_0050"
/note="PFAM: molybdopterin biosynthesis MoaE protein;
KEGG: gdi:GDI1822 putative molybdopterin-converting factor
subunit 2"
/codon_start=1
/transl_table=11
/product="molybdopterin biosynthesis MoaE protein"
/protein_id="YP_002274467.1"
/db_xref="GI:209542238"
/db_xref="InterPro:IPR003448"
/db_xref="GeneID:6973439"
/translation="MRVDVRVQADPFSLDVETARLTRDGHDIGGMGMFLGVVRGGDGL
AALTLEHYPGMTESMIARIVHEAGARFGLLACTVIHRVGRLEVGAPIVLVLCAAAHRG
AALEATSFVIDWLKTRAPFWKREDRADGSSAWVEARESDEAAATRWGPVG"
misc_feature 56306..56677
/locus_tag="Gdia_0050"
/note="MoaE family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (Moco), an
essential cofactor for a diverse group of redox enzymes.
Moco biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and...; Region: MoaE;
cd00756"
/db_xref="CDD:58647"
misc_feature order(56324..56326,56336..56338,56357..56359,56363..56377,
56381..56383,56387..56389,56540..56542,56567..56569,
56573..56575,56597..56599,56609..56611)
/locus_tag="Gdia_0050"
/note="MoaE homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:58647"
misc_feature order(56420..56422,56426..56428,56435..56437,56444..56446,
56456..56458,56510..56512,56618..56623,56627..56629,
56633..56641,56672..56674)
/locus_tag="Gdia_0050"
/note="MoaD interaction [polypeptide binding]; other site"
/db_xref="CDD:58647"
misc_feature order(56618..56620,56639..56641)
/locus_tag="Gdia_0050"
/note="active site residues [active]"
/db_xref="CDD:58647"
gene 56971..58968
/locus_tag="Gdia_0051"
/db_xref="GeneID:6973440"
CDS 56971..58968
/locus_tag="Gdia_0051"
/EC_number="1.17.4.1"
/note="Catalyzes the rate-limiting step in dNTP synthesis"
/codon_start=1
/transl_table=11
/product="ribonucleotide-diphosphate reductase subunit
alpha"
/protein_id="YP_002274468.1"
/db_xref="GI:209542239"
/db_xref="InterPro:IPR000788"
/db_xref="InterPro:IPR013346"
/db_xref="InterPro:IPR013509"
/db_xref="GeneID:6973440"
/translation="MTLDDVSGTVSDHSAGERDLFQDRDPAQSSGQPSSQQSSTPQSP
AQMQDMFDDVVQLPGHHPVRVNRSRDALLTPFGKATLDNRYLLEGESYQDLFGRVSSY
YGADPGHAQRLYDYMSRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNE
NVWLASKGGGIGSYWGNLRSIGENVGRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSA
AVYLPVWHPEIEEFIELRRPTGGDPNRKALNLHHGVLVSDAFMRAVAEDGEWALLSPK
DGAHIRKISARSLWIRILTARMEQGEPYIIYSDHVNNARPEHHKMAGLEVKTSNLCAE
ITLPTGMDHHGNERTAVCCLSSLNLETWDEWKDDPRFIEDVMLFLDNVLQDFIDRAPD
DMERAKYAASRERSVGLGVMGFHSFLQANNIPFESVIAKVWNKRIFKHIREQADLASR
KLAELRGPCPDAAEYGFMERFSNKLAIAPTASISIIAGNASPGIEPIAANVFLQKTLS
GSFTVRNRHLLKLLIDKGQNTEEVWSSITLTKGSVQHLDFLTQQEKDVFKTAFELDQR
WVVEHAADRAGYICQAQSINLFLPADVHKRDLHQIHYLAWKRGVKSLYYCRSLSIQRA
DTVSNVLGKVDVMADEPSAPAPAPASPPASSNNYDECLACQ"
misc_feature 57127..58965
/locus_tag="Gdia_0051"
/note="ribonucleotide-diphosphate reductase subunit alpha;
Validated; Region: PRK09102"
/db_xref="CDD:181648"
misc_feature 57244..58824
/locus_tag="Gdia_0051"
/note="Class I ribonucleotide reductase; Region: RNR_I;
cd01679"
/db_xref="CDD:153088"
misc_feature order(57346..57351,57391..57396,57478..57480,57958..57960,
57964..57966,57970..57972,58030..58032,58402..58419)
/locus_tag="Gdia_0051"
/note="active site"
/db_xref="CDD:153088"
misc_feature order(57382..57384,57421..57426,57433..57435,57442..57447,
57454..57459,57466..57468,57511..57513,57544..57546,
57556..57561,57565..57570,57577..57582,57589..57603)
/locus_tag="Gdia_0051"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153088"
misc_feature order(57394..57396,57958..57960,57964..57966,57970..57972,
58024..58026,58810..58815)
/locus_tag="Gdia_0051"
/note="catalytic residues [active]"
/db_xref="CDD:153088"
misc_feature order(57415..57423,57430..57432,57466..57468,57505..57507,
57544..57546,57559..57561)
/locus_tag="Gdia_0051"
/note="effector binding site; other site"
/db_xref="CDD:153088"
misc_feature order(57742..57744,57751..57756,57760..57762,57826..57831,
57841..57843,57862..57864,58750..58758,58762..58767,
58777..58782,58786..58791)
/locus_tag="Gdia_0051"
/note="R2 peptide binding site; other site"
/db_xref="CDD:153088"
gene 58977..60038
/gene="nrdF"
/locus_tag="Gdia_0052"
/db_xref="GeneID:6973441"
CDS 58977..60038
/gene="nrdF"
/locus_tag="Gdia_0052"
/EC_number="1.17.4.1"
/note="B2 or R2 protein; type 1b enzyme; catalyzes the
rate-limiting step in dNTP synthesis; converts nucleotides
to deoxynucleotides; forms a homodimer and then a
multimeric complex with NrdE"
/codon_start=1
/transl_table=11
/product="ribonucleotide-diphosphate reductase subunit
beta"
/protein_id="YP_002274469.1"
/db_xref="GI:209542240"
/db_xref="InterPro:IPR000358"
/db_xref="GeneID:6973441"
/translation="MTDITNATGTAPESAPQPTGVEARLDLLTSNPIYKPFRYPWAYD
AWLTQQRVHWLPEEVPLADDVKDWHRTLTESEQHLVTQIFRFFTQSDVEVNNCYMKHY
SRVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEMEYSAFLKYKEMKDKYDYMQ
GFSVDSKPEIARTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETL
HCLSMARLFRVFIQENPEIWTDALRADIVQICRDIVEHEDAFIDLCFEMGPVEGLDGD
LVKTYIRFIADRRLNLLGLDGIYDVPSNPLPWVDDMLNAVEHTNFFENRSTEYSRAST
TGSWEEAFEESVFQNGNAG"
misc_feature 59076..59918
/gene="nrdF"
/locus_tag="Gdia_0052"
/note="Ribonucleotide Reductase, R2/beta subunit,
ferritin-like diiron-binding domain; Region: RNRR2;
cd01049"
/db_xref="CDD:153108"
misc_feature order(59103..59105,59124..59126,59322..59327,59334..59336,
59343..59348,59355..59357,59364..59366,59412..59414)
/gene="nrdF"
/locus_tag="Gdia_0052"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153108"
misc_feature order(59136..59138,59247..59249,59340..59342,59349..59351,
59361..59363,59616..59621,59631..59633)
/gene="nrdF"
/locus_tag="Gdia_0052"
/note="putative radical transfer pathway; other site"
/db_xref="CDD:153108"
misc_feature order(59247..59249,59340..59342,59349..59351,59520..59522,
59622..59624,59631..59633)
/gene="nrdF"
/locus_tag="Gdia_0052"
/note="diiron center [ion binding]; other site"
/db_xref="CDD:153108"
misc_feature 59361..59363
/gene="nrdF"
/locus_tag="Gdia_0052"
/note="tyrosyl radical; other site"
/db_xref="CDD:153108"
gene complement(60042..60860)
/locus_tag="Gdia_0053"
/db_xref="GeneID:6973442"
CDS complement(60042..60860)
/locus_tag="Gdia_0053"
/note="KEGG: gdi:GDI1825 putative methyltransferase"
/codon_start=1
/transl_table=11
/product="putative methyltransferase"
/protein_id="YP_002274470.1"
/db_xref="GI:209542241"
/db_xref="InterPro:IPR002052"
/db_xref="GeneID:6973442"
/translation="MTVKPKDTMHEAMPDQPCAPDDANPDALSHGTLLNGRLRYRQFR
HGYRTGLEPVLMAAYVPARPGARVLEGGCGAGAGLMCLAHRVPAISGVGLERDERTAA
LAQANFADNGFDRLAVVRTALPDLPGPPVFPPDGGGFDHAFANPPWHHNAASASPDAR
RDLARRVGSPDMIALWIRALGRQVRHRGTLTLALPAGLLDMAVAAMRAHGIGAISLFP
FWPKAGRAARIMLIQGRVGARGEAVLMPGMTLHRDDGSFTPQAEAVLRDGAPIA"
misc_feature complement(60060..60767)
/locus_tag="Gdia_0053"
/note="Predicted O-methyltransferase [General function
prediction only]; Region: COG4123"
/db_xref="CDD:33880"
gene 60919..61995
/locus_tag="Gdia_0054"
/db_xref="GeneID:6973443"
CDS 60919..61995
/locus_tag="Gdia_0054"
/note="PFAM: Polyprenyl synthetase;
KEGG: gdi:GDI1826 putative octaprenyl-diphosphate
synthase"
/codon_start=1
/transl_table=11
/product="polyprenyl synthetase"
/protein_id="YP_002274471.1"
/db_xref="GI:209542242"
/db_xref="InterPro:IPR000092"
/db_xref="GeneID:6973443"
/translation="MGVAVTLPESERTASAKNAESSDPVTESAETALRDLSDYLGDDM
AACNRAIVERMDSPVALIPQLAAHLVAAGGKRLRPLLTLAAARLCDYPAGPEHQRHVS
LAACVEFIHTATLLHDDVVDESLLRRGLASANAVFGNKASVLVGDFLFARSFQLMTDD
GSLKVMAILSSASATIAEGEVLQMSTQNDLSTSVEQYLEVIHGKTAALFAAACRVGAV
VAERPEAEELALESFGTNLGMAFQLVDDALDYAADQAVLGKTVGDDFREGKITLPVLA
AYAAGDEEERVFWRRVIEQSEQAPEDLDRALALIAKTDAIGVTLDRAALYAQAARDAL
EIFPDSRLRRLLQDTAAYTVSRGR"
misc_feature 61021..61986
/locus_tag="Gdia_0054"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature 61087..61986
/locus_tag="Gdia_0054"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature order(61246..61248,61255..61263,61267..61275,61279..61284,
61297..61302,61456..61458,61465..61467,61528..61533,
61540..61542,61651..61656,61663..61665,61693..61695,
61708..61710,61723..61725)
/locus_tag="Gdia_0054"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature 61255..61284
/locus_tag="Gdia_0054"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature order(61270..61275,61282..61284,61297..61302,61465..61467,
61528..61530,61651..61656,61663..61665,61693..61695,
61708..61710,61723..61725)
/locus_tag="Gdia_0054"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature order(61270..61275,61282..61284,61297..61302,61528..61530,
61651..61656)
/locus_tag="Gdia_0054"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature order(61270..61275,61282..61284,61297..61302,61465..61467,
61528..61530)
/locus_tag="Gdia_0054"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature order(61288..61332,61672..61677,61693..61710,61717..61731)
/locus_tag="Gdia_0054"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature order(61651..61656,61663..61665,61693..61695,61708..61710,
61723..61725)
/locus_tag="Gdia_0054"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(62035..62853)
/locus_tag="Gdia_0055"
/db_xref="GeneID:6973444"
CDS complement(62035..62853)
/locus_tag="Gdia_0055"
/EC_number="5.1.1.3"
/note="KEGG: gdi:GDI1827 putative glutamate racemase;
TIGRFAM: glutamate racemase;
PFAM: Asp/Glu/hydantoin racemase"
/codon_start=1
/transl_table=11
/product="glutamate racemase"
/protein_id="YP_002274472.1"
/db_xref="GI:209542243"
/db_xref="InterPro:IPR001920"
/db_xref="InterPro:IPR004391"
/db_xref="InterPro:IPR015942"
/db_xref="GeneID:6973444"
/translation="MARRILAFDSGIGGFGIVRALRTRLPGVSLDYLADNAVYPYGEQ
PDTDLIRRIVALIGQAIDALDPDLVVIACNTASTLALPALRERYALPFVGCVPPIKWA
AELSRTRTIGLLATRATVRRPYLGDLQRRYAPDCTLLAHGARGLADLAECAFRGHAIA
TDAIDRELDALFGQPGGAAIDVVGIGCTHYTFLMDRLRAASPPGTIWLDPAEAVARQA
ATVLGPLGTAAPARPARAFFTAAPAEPERLAAAIAPLGYGAPVLFENVAQGLCP"
misc_feature complement(62191..62853)
/locus_tag="Gdia_0055"
/note="glutamate racemase; Provisional; Region: PRK00865"
/db_xref="CDD:179146"
gene complement(62880..63641)
/gene="pyrE"
/locus_tag="Gdia_0056"
/db_xref="GeneID:6973445"
CDS complement(62880..63641)
/gene="pyrE"
/locus_tag="Gdia_0056"
/EC_number="2.4.2.10"
/note="involved in fifth step of pyrimidine biosynthesis;
converts orotidine 5'-phosphate and diphosphate to orotate
and 5-phospho-alpha-D-ribose 1-diphosphate"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase"
/protein_id="YP_002274473.1"
/db_xref="GI:209542244"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR004467"
/db_xref="GeneID:6973445"
/translation="MNDSTGYGTGASSGSTAWDRDAALTTAKLLLEIKAVNFRPEEPY
TLTSGWKSPVYIDCRRIIFFPRARAKIVELGVEKIGRHIGYESIDAVVGGETAGIPFA
AWIADRMMAPMAYVRKKPKGFGRNAQIEGDVPEGMRTLLVEDLTTDGSSKIRFARALR
DAGAIVDHTFVVFFYGVFPGSLRTLADMNISLHALCTWWDVLEACAGQPYFSEKAASE
VRRFLEDPCEWSGRHGGVSSQEEALAFKGANQTQG"
misc_feature complement(63051..63416)
/gene="pyrE"
/locus_tag="Gdia_0056"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(63111..63113,63189..63203,63207..63215,
63351..63353,63357..63359))
/gene="pyrE"
/locus_tag="Gdia_0056"
/note="active site"
/db_xref="CDD:206754"
gene 63885..64124
/locus_tag="Gdia_0057"
/db_xref="GeneID:6973446"
CDS 63885..64124
/locus_tag="Gdia_0057"
/note="KEGG: gdi:GDI1829 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274474.1"
/db_xref="GI:209542245"
/db_xref="GeneID:6973446"
/translation="MALETGGIVRNCERAVVTAYRELREVGTSDVSAFHACTTLYRIH
HPDASLNEARRLVSEWIDHHVVRRDNGPTPGCDCD"
gene complement(64254..65552)
/locus_tag="Gdia_0058"
/db_xref="GeneID:6973447"
CDS complement(64254..65552)
/locus_tag="Gdia_0058"
/EC_number="2.3.3.1"
/note="KEGG: gdi:GDI1830 citrate synthase;
TIGRFAM: citrate synthase I;
PFAM: Citrate synthase"
/codon_start=1
/transl_table=11
/product="citrate synthase I"
/protein_id="YP_002274475.1"
/db_xref="GI:209542246"
/db_xref="InterPro:IPR002020"
/db_xref="InterPro:IPR010953"
/db_xref="GeneID:6973447"
/translation="MTEPGKVATVSLEGKTASLPVLSGTLGPDVLDVRRIAADMGVFT
FDPGYGETASCESKITFIDGGKGVLLHRGYPIAQLAEQGTFLEVAYLLLNGELPTTAQ
HEAFVSTIKSHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYHEGTDISNEASR
SLSAMRLIAKLPTIAAWAYKYTQGEPFVYPRNDLNYAENFLSMMFAHPSEPYVINPVL
ARAMDRILILHADHEQNASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLK
MLAEIGNKDNIPDFIAKVKDKNSGVRLMGFGHRVYKNFDPRAKIMQATCHEVLGELGI
KDDPLLDLAVELEKIAINDEYFVKRSLYPNVDFYSGIILKAMGIPTSMFTVLFAVART
VGWISQWKEMIEEPGQRIGRPRQLYTGAPQRDFTPFAQRG"
misc_feature complement(64296..65498)
/locus_tag="Gdia_0058"
/note="Escherichia coli (Ec) citrate synthase (CS)
GltA_like. CS catalyzes the condensation of acetyl
coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate
and coenzyme A (CoA), the first step in the citric acid
cycle (TCA or Krebs cycle). The overall CS...; Region:
EcCS_like; cd06114"
/db_xref="CDD:99867"
misc_feature complement(order(64296..64322,64326..64328,64623..64628,
64740..64745,64749..64766,64770..64775,64794..64796,
64803..64814,64821..64823,64833..64838,64845..64859,
65112..65120,65127..65129,65136..65138,65148..65150,
65160..65162,65172..65180,65184..65189,65196..65198,
65229..65234,65241..65246,65253..65255,65259..65270,
65292..65294,65307..65309,65319..65321,65328..65339,
65373..65375,65379..65429))
/locus_tag="Gdia_0058"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99867"
misc_feature complement(64314..65411)
/locus_tag="Gdia_0058"
/note="Citrate synthase; Region: Citrate_synt; pfam00285"
/db_xref="CDD:201131"
misc_feature complement(order(64317..64319,64326..64328,64380..64382,
64392..64394,64455..64457,64461..64463,64470..64472,
64476..64478,64602..64604,64617..64619,64626..64649,
64734..64736,64743..64745,64749..64757,64848..64850,
64857..64859,65403..65405))
/locus_tag="Gdia_0058"
/note="active site"
/db_xref="CDD:99867"
misc_feature complement(order(64380..64382,64461..64463,64602..64604,
64626..64640,64644..64649,64752..64757,64848..64850,
64857..64859,65403..65405))
/locus_tag="Gdia_0058"
/note="citrylCoA binding site [chemical binding]; other
site"
/db_xref="CDD:99867"
misc_feature complement(order(64977..64979,65043..65045,65055..65057,
65109..65111,65202..65222,65226..65228))
/locus_tag="Gdia_0058"
/note="NADH binding [chemical binding]; other site"
/db_xref="CDD:99867"
misc_feature complement(order(64929..64934,64974..65012,65163..65180,
65187..65213))
/locus_tag="Gdia_0058"
/note="cationic pore residues; other site"
/db_xref="CDD:99867"
misc_feature complement(order(64317..64319,64380..64382,64392..64394,
64455..64457,64602..64604,64629..64631,64749..64754,
64848..64850,64857..64859))
/locus_tag="Gdia_0058"
/note="oxalacetate/citrate binding site [chemical
binding]; other site"
/db_xref="CDD:99867"
misc_feature complement(order(64326..64328,64455..64457,64461..64463,
64470..64472,64476..64478,64617..64619,64626..64628,
64632..64649,64734..64736,64743..64745,64752..64757))
/locus_tag="Gdia_0058"
/note="coenzyme A binding site [chemical binding]; other
site"
/db_xref="CDD:99867"
misc_feature complement(order(64455..64457,64629..64631,64752..64754))
/locus_tag="Gdia_0058"
/note="catalytic triad [active]"
/db_xref="CDD:99867"
gene complement(65723..66280)
/locus_tag="Gdia_0059"
/db_xref="GeneID:6973448"
CDS complement(65723..66280)
/locus_tag="Gdia_0059"
/note="PFAM: Phosphoglycerate mutase;
KEGG: gdi:GDI1831 putative phosphoglycerate mutase"
/codon_start=1
/transl_table=11
/product="putative phosphohistidine phosphatase SixA"
/protein_id="YP_002274476.1"
/db_xref="GI:209542247"
/db_xref="InterPro:IPR013078"
/db_xref="GeneID:6973448"
/translation="MPRPPKADGNAAARRTLVLMRHAEAFPARHGDPGPSGDLERPLT
PSGRRKAHERGTQLREIGFVPDLVLISPARRSGETYAALGPFSTTDAPHVRQEAGLYE
AGAGSILEILREIPETASNIIVVGHNPDLYHLVLDLAGDAIDDPDKTILNRGFPTASA
AWFTVEGPWHELARRRVALARVLCT"
misc_feature complement(65780..66235)
/locus_tag="Gdia_0059"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature complement(order(65897..65902,66056..66058,66215..66220))
/locus_tag="Gdia_0059"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene complement(66280..66624)
/locus_tag="Gdia_0060"
/db_xref="GeneID:6973449"
CDS complement(66280..66624)
/locus_tag="Gdia_0060"
/note="TIGRFAM: chorismate mutase;
PFAM: Chorismate mutase;
KEGG: gdi:GDI1832 putative chorismate mutase"
/codon_start=1
/transl_table=11
/product="chorismate mutase"
/protein_id="YP_002274477.1"
/db_xref="GI:209542248"
/db_xref="InterPro:IPR002701"
/db_xref="InterPro:IPR010951"
/db_xref="GeneID:6973449"
/translation="MNDMTAIDRTLATPEAQATLQALRQSIDNIDAALIYMLAERFRH
TQAVGELKARHDMPPADPAREAQQVSRLRDLAGAARLDPDFAEKFLAFIIKEVIRHHE
AIARKTGANGTA"
misc_feature complement(66289..66591)
/locus_tag="Gdia_0060"
/note="chorismate mutase; Provisional; Region: PRK09239"
/db_xref="CDD:181719"
gene complement(66666..67520)
/locus_tag="Gdia_0061"
/db_xref="GeneID:6973450"
CDS complement(66666..67520)
/locus_tag="Gdia_0061"
/note="PFAM: metallophosphoesterase;
KEGG: gdi:GDI1833 putative phosphoesterases"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_002274478.1"
/db_xref="GI:209542249"
/db_xref="InterPro:IPR004843"
/db_xref="GeneID:6973450"
/translation="MPLERPHPSGPAWTPPIADARAPDGPYLPPDGHADDHAALDSVT
DVPAFYDPVAVERLIDGRPIRVVGDVHGDLRAFEHAVATDRFVIQLGDLVDHGPDSAG
TFRLMQRLLDDGRGLFILGNHDRKLARALAGRKMRQDAPLIQTMRQFQAPENEDVRTR
AWQDIAHAPPWIVLGRRIFVHGGFHSRMLNEPPPPGLGTVTPLLSRALFGETTGRMQK
DGYPERRLNWIDHIPPGYTVYCGHDRRSTDGRPWIRVGRAGGTSVFTDTGAGKGGHLA
WIDLPDDA"
misc_feature complement(<66837..67334)
/locus_tag="Gdia_0061"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
misc_feature complement(order(66978..66980,67152..67157,67245..67247,
67308..67310,67314..67316))
/locus_tag="Gdia_0061"
/note="active site"
/db_xref="CDD:163614"
misc_feature complement(order(66978..66980,67155..67157,67245..67247,
67308..67310,67314..67316))
/locus_tag="Gdia_0061"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
gene complement(67634..67957)
/locus_tag="Gdia_0062"
/db_xref="GeneID:6973451"
CDS complement(67634..67957)
/locus_tag="Gdia_0062"
/note="KEGG: gdi:GDI1834 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274479.1"
/db_xref="GI:209542250"
/db_xref="GeneID:6973451"
/translation="MAGPLVPDTRRDHDRHVSALLDRLPPRMRAAIEWLRVPSRRPVR
LVAGGLLCMGGFLFFLPVLGLWMLPLGLLLLSEDVPLLRRFMDRILIHIARKHPDWLE
PKDEK"
gene 68092..69612
/locus_tag="Gdia_0063"
/db_xref="GeneID:6973452"
CDS 68092..69612
/locus_tag="Gdia_0063"
/EC_number="3.1.2.1"
/note="KEGG: gdi:GDI1836 acetyl-CoA hydrolase;
TIGRFAM: succinate CoA transferase;
PFAM: acetyl-CoA hydrolase/transferase"
/codon_start=1
/transl_table=11
/product="succinate CoA transferase"
/protein_id="YP_002274480.1"
/db_xref="GI:209542251"
/db_xref="InterPro:IPR003702"
/db_xref="InterPro:IPR017821"
/db_xref="GeneID:6973452"
/translation="MIDHNRIRNAAFRAKVTTAEEAAYYIRPGSMVGMSGFTGSGYPK
AVPQALAAIMEAEKAKGNSFRIRLFTGASTGPELDGALAKADGIAFRMPYNSDATLRG
RINKGETEYLDMHLSHVAPMVWQGFFGEMDTAVIEAVAIREDGTIVPSSSVGNNKTWL
ESARQVIIEVNSWQDAALEGMHDIWYGAALPPERQPIPLLRPDDRIGQATLRVDPSKV
VAVVETHAPDRNAPFTPPDASAKAIAGHLMEFFRHEVARGRLPQSLLPLQSGVGNVAN
AVMSGLEEGPFEDLTAFTEVIQDGMLGMLESGKMRVASATAFSLSPEAAESLNARMAE
FRSKIILRPQDISNHPELIRRLGCIAMNGLIESDIYGNVNSTQIMGSRIQNGIGGSGD
FARNAYISVFMTPSTAKGGKISAIVPMASHVDHITQDSQVLVTEQGLADLRGLSPKQR
AEVIIKNCAHPDYRPGLQDYFKRAKEGSYGLQSPHLLTESLSWHQRFIETGSMLPT"
misc_feature 68113..68760
/locus_tag="Gdia_0063"
/note="Acetyl-CoA hydrolase/transferase N-terminal domain;
Region: AcetylCoA_hydro; pfam02550"
/db_xref="CDD:111448"
misc_feature 68134..69597
/locus_tag="Gdia_0063"
/note="succinate CoA transferases; Region: YgfH_subfam;
TIGR03458"
/db_xref="CDD:163273"
misc_feature 69091..69498
/locus_tag="Gdia_0063"
/note="Acetyl-CoA hydrolase/transferase C-terminal domain;
Region: AcetylCoA_hyd_C; pfam13336"
/db_xref="CDD:205516"
gene complement(69662..74197)
/locus_tag="Gdia_0064"
/db_xref="GeneID:6973453"
CDS complement(69662..74197)
/locus_tag="Gdia_0064"
/note="PFAM: SMC domain protein;
KEGG: gdi:GDI1837 putative chromosome segregation protein
SMC"
/codon_start=1
/transl_table=11
/product="SMC domain-containing protein"
/protein_id="YP_002274481.1"
/db_xref="GI:209542252"
/db_xref="InterPro:IPR003395"
/db_xref="InterPro:IPR003439"
/db_xref="GeneID:6973453"
/translation="MTARFVRLRIAGFKSFADPVAVDILPGLTGIVGPNGCGKSNVVE
ALRWAMGESSARSLRGGEMDDLIFAGTAARAARNLAEVTLTLEGTTGIAPPPLHDQDE
LQISRRAERGAGSDYRVNSKPIRARDVQTLFADLASGARSSAMVSQGRVSALVNARPE
ERRSILEEAAGITGLHARRHEAELKLRATESNLARADDLRVQLEGHLDNLRGQSQQAR
RYREISAALREAEITLLALLHARARLAVERAGQAARQARHAMTQAEEAAETAVVTEFE
ANRDLPALRVRSDETRTVLERQKILAEGIAREEQRAAEAASDAAARLQQAEADHQAAE
ARHADAGENVARLQAEQAALDTRLAALPQDVAQAQADLATAGESVQAQERALEQATSD
ATAARARAEQVEAAHREAQARHARLCDQHDRLAAELDALRAALPGQADMEAQAAALAA
SSEHLARTRAALDHAAQEQSDATLAVTLARNHATEARRRQEEAQRALAQATERATALR
AARQALQRRQDDTNAHLVAPERREALRTGLAEAQSALAAARAALEQAELDRQAASAAQ
IEARARLQEGVTRRAAIGTALRTAESTQQRAQARLQALQGDLARARAAAIAPDRVDAA
RAARESAERDLAASGLALEGAESGLAAALAARDAATHHLAEVKADLSRLTAEIEGLTQ
ALATGHGESGCRPVVDDILVPDGLEAALASALAEGLEASVEPEAPRLWHRLDDLPAPA
LPGDGTVALSGLVTAPPALTRALTAIGLLADGVDGAALQAGLRPGQSLVDRTGALWRW
DGYRVAAGLPSRAALLLQQRNRLRETEAARDIRRADLPVAEAALAEAEQARAQAAESV
TQARAARTRIETVLRQARADEAEIGRLDSAARARLDTVQPQHDQAVQALAEAESALAA
ARDEATALPDEAQLAQAHEAARRHEQAAQAAEAVARETRRRAEAAQEAARREDDATAA
RHGEAEARLATIVPELQRITREAEQAEAALGDAETALSALPPVQDAESALAAAEARAR
DAAQAHDAARQARQQAESALEQAQAAHAARQTAQIETRSALDAQAPRLESLGQERDEA
AAHLARVTAERESLPDLEAIATHVQQMREAMAAARQAEDAARQQGTALAGEQQAARAR
LDGLVAALADWTARQAAAAAERDGSIARLEAARADHARLAALPDEVTRTRATTHDALH
RAESDHADAARTLAEAEDALARAQTGRRDAEGALAAAREALLRAEGRHEQAEAILTQL
LTETPEPPGIVPPDLTEAAESSLRRKIARLVREREEMGPVNLRAELEADEAETRIATI
RNEKDELESAIARLRGSIGALNREGRERLLAVFTEVDQHFQSLFSRMFNGGRAHLGMV
GNDDPLQAGLEIYAQPPGKKLATLSLLSGGEQALTALSLIFAVFRCNPAPICVLDEVD
APLDDANVGRFCALLADMVAEAGTRFLVVTHHQLTMAHMDRLYGVTMQERGVSRVLSV
DLDHAATMAGQSRAETV"
misc_feature complement(73532..74179)
/locus_tag="Gdia_0064"
/note="AAA domain; Region: AAA_23; pfam13476"
/db_xref="CDD:205654"
misc_feature complement(<73922..74179)
/locus_tag="Gdia_0064"
/note="Barmotin is a tight junction-associated protein
expressed in rat epithelial cells which is thought to have
an important regulatory role in tight junction barrier
function. Barmotin belongs to the SMC protein family.
SMC proteins are large; Region: ABC_SMC_barmotin; cd03278"
/db_xref="CDD:73037"
misc_feature complement(74078..74101)
/locus_tag="Gdia_0064"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73037"
misc_feature complement(order(74075..74083,74087..74092))
/locus_tag="Gdia_0064"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73037"
misc_feature complement(69728..>70015)
/locus_tag="Gdia_0064"
/note="Barmotin is a tight junction-associated protein
expressed in rat epithelial cells which is thought to have
an important regulatory role in tight junction barrier
function. Barmotin belongs to the SMC protein family.
SMC proteins are large; Region: ABC_SMC_barmotin; cd03278"
/db_xref="CDD:73037"
misc_feature complement(69956..69985)
/locus_tag="Gdia_0064"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73037"
misc_feature complement(69896..69913)
/locus_tag="Gdia_0064"
/note="Walker B; other site"
/db_xref="CDD:73037"
misc_feature complement(69878..69889)
/locus_tag="Gdia_0064"
/note="D-loop; other site"
/db_xref="CDD:73037"
misc_feature complement(69791..69811)
/locus_tag="Gdia_0064"
/note="H-loop/switch region; other site"
/db_xref="CDD:73037"
gene complement(74229..74846)
/locus_tag="Gdia_0065"
/db_xref="GeneID:6973454"
CDS complement(74229..74846)
/locus_tag="Gdia_0065"
/note="PFAM: DSBA oxidoreductase;
KEGG: gdi:GDI1838 thioredoxin protein"
/codon_start=1
/transl_table=11
/product="DSBA oxidoreductase"
/protein_id="YP_002274482.1"
/db_xref="GI:209542253"
/db_xref="InterPro:IPR001853"
/db_xref="GeneID:6973454"
/translation="MPVTRRTLIATAPALLAPGLAPRAARAADTDPRMSVRAAGNPAA
KVHVEEWFSLTCTHCARFAGEVFPEIRTRLIETGKVYYIFRDFPLDQLALAAAMIART
LPPERYEPFVLSLLSSQDRWAFARDVNPQDELQKMAALAGMPADLFQKTIADDTLRQA
IMDEENRAQAQYKIEGTPTFRFNDKVQVGQEMTYDDFAQKVASLA"
sig_peptide complement(74763..74846)
/locus_tag="Gdia_0065"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.998 at
residue 28"
misc_feature complement(74256..74729)
/locus_tag="Gdia_0065"
/note="Thioredoxin; Region: Thioredoxin_4; pfam13462"
/db_xref="CDD:205640"
misc_feature complement(74280..74705)
/locus_tag="Gdia_0065"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:201729"
gene complement(74921..75850)
/locus_tag="Gdia_0066"
/db_xref="GeneID:6973455"
CDS complement(74921..75850)
/locus_tag="Gdia_0066"
/note="PFAM: Bile acid:sodium symporter;
KEGG: gdi:GDI1839 putative transporter protein"
/codon_start=1
/transl_table=11
/product="bile acid:sodium symporter"
/protein_id="YP_002274483.1"
/db_xref="GI:209542254"
/db_xref="InterPro:IPR002657"
/db_xref="GeneID:6973455"
/translation="MSVLTRLFPLWAILVSASAIRWPGPFLALSPAITPLLAFVMFTM
GVTLTVADFRRIARRPAPVLAGIVLHYTIMPLAAWLVARMLGLPPALRVGMILVGSVS
SGTASNVMIYLARGDVALSVSISTLSTLVGIVATPLLTRLYVSADVAVDTWALLRSIV
ELVALPVVGGLAVNMLAHRAVRRIEPALPLVAMIAIMAIIGSIVASVRPSLAFAGPIV
LLAVMLHNGMGLLGGYWGGRLLRLDESACRTLAIEVGMQNSGLAATLGRLYFGPLAAL
PGAIFSIWHNISGSALSAWWAGRPVRDTAPRSS"
misc_feature complement(74924..75847)
/locus_tag="Gdia_0066"
/note="Predicted Na+-dependent transporter [General
function prediction only]; Region: COG0385"
/db_xref="CDD:30734"
misc_feature complement(<75392..75751)
/locus_tag="Gdia_0066"
/note="Membrane transport protein; Region: Mem_trans;
cl09117"
/db_xref="CDD:212293"
gene complement(75861..76835)
/locus_tag="Gdia_0067"
/db_xref="GeneID:6973456"
CDS complement(75861..76835)
/locus_tag="Gdia_0067"
/note="PFAM: CBS domain containing protein;
transporter-associated region;
KEGG: gdi:GDI1840 putative magnesium and cobalt efflux
protein CorC"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274484.1"
/db_xref="GI:209542255"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR005170"
/db_xref="GeneID:6973456"
/translation="MNRPLPVSATSDAAPHRTDAPKAETARPPDEVPPSRPRGRGLLS
LFGRRRVEQGLRHSIAALVQEANDAEGDGADPNSELDRQERALIANVLRLRGITADDV
MVPRADIVAMPVSLSLDEALALMRRENHSRMPVYREQLDDIVGMIHVKDLIAYVGTSE
GFNVESLLRQPLMVAPQIPVLDLLLQMRQRRVHLALIIDEYGGIDGLVTIEDLVETIV
GDISDEHDEPTAVLIQERPDGTFDVDARLPVEQFESRLGPLLTDAEREAEIETVGGLV
FYLAGHVPTRGEVLTHDSGLVFRVLDADSLHIRKVRVRPPPPPPAPAA"
misc_feature complement(76194..76526)
/locus_tag="Gdia_0067"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:30863"
misc_feature complement(76188..76517)
/locus_tag="Gdia_0067"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature complement(75894..76136)
/locus_tag="Gdia_0067"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene complement(76832..77440)
/locus_tag="Gdia_0068"
/db_xref="GeneID:6973457"
CDS complement(76832..77440)
/locus_tag="Gdia_0068"
/note="PFAM: protein of unknown function UPF0054;
KEGG: gdi:GDI1841 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274485.1"
/db_xref="GI:209542256"
/db_xref="InterPro:IPR002036"
/db_xref="GeneID:6973457"
/translation="MEPRSSQNPAESGGVLTIEPTAGRAVGLPPVPLHEWDVPAGDGG
DDCDVVVTDARWHGAVPGIAALVRRTARAAWGGDAPGPVTIMLDNDRAIRRLNARHRD
RNKPTNVLTFDYPGGLPGGDIMIALETVRREAQAAGRPIRHHLMHLVVHGILHLRGHD
HHQAGEARRMEMEEARILGRLSVPNPWKYRPGAPSGLMGDGQ"
misc_feature complement(76898..77212)
/locus_tag="Gdia_0068"
/note="Uncharacterized protein family UPF0054; Region:
UPF0054; pfam02130"
/db_xref="CDD:202122"
gene complement(77424..78515)
/locus_tag="Gdia_0069"
/db_xref="GeneID:6973458"
CDS complement(77424..78515)
/locus_tag="Gdia_0069"
/note="PFAM: PhoH family protein;
KEGG: gdi:GDI1842 putative PhoH-like protein"
/codon_start=1
/transl_table=11
/product="PhoH family protein"
/protein_id="YP_002274486.1"
/db_xref="GI:209542257"
/db_xref="InterPro:IPR003714"
/db_xref="GeneID:6973458"
/translation="MDAMRTITLQFDDNALLARLVGDHDRHLLHLERGFGIRLSCRGN
RVAVSGTPDRVEIAQAALNSLYRRLEGGTDLDTAEIDAAIRMAAAHHTLPRLPSEGRS
AMPHDSAHLPQPHRSESHRLSLPELPAIRTRRGAIAPRSAGQATYMEMLAQAEMVFGI
GPAGTGKTYLAVAQAVAMLQAGQVDRIVLSRPAVEAGERLGFLPGDMKDKIDPYLRPL
YDALHDMLPGDQVVRRMATGEIEVAPLAFMRGRTLAHSFVILDEAQNTTSAQMKMFLT
RMGSGTRMVVTGDLSQVDLPSGVTSGLRDAVDTLEGLPGIGITRFESRDVVRHPLVAR
IVDAYDQRAAAERDMSRSRARRENNGTAK"
misc_feature complement(77445..78506)
/locus_tag="Gdia_0069"
/note="Phosphate starvation-inducible protein PhoH,
predicted ATPase [Signal transduction mechanisms]; Region:
PhoH; COG1702"
/db_xref="CDD:31888"
misc_feature complement(77496..78107)
/locus_tag="Gdia_0069"
/note="PhoH-like protein; Region: PhoH; pfam02562"
/db_xref="CDD:190347"
gene complement(78599..80008)
/locus_tag="Gdia_0070"
/db_xref="GeneID:6973459"
CDS complement(78599..80008)
/locus_tag="Gdia_0070"
/note="catalyzes the formation of
2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at
position 37 in tRNAs that read codons beginning with
uridine from N6-(dimethylallyl)adenosine (i(6)A)"
/codon_start=1
/transl_table=11
/product="(dimethylallyl)adenosine tRNA
methylthiotransferase"
/protein_id="YP_002274487.1"
/db_xref="GI:209542258"
/db_xref="InterPro:IPR002792"
/db_xref="InterPro:IPR005839"
/db_xref="InterPro:IPR006463"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR013848"
/db_xref="GeneID:6973459"
/translation="MTDQPACPPAMDLAPASGSRGLHVITWGCQMNVYDSARMTDVLR
PLGYHPVDTPDTADMVILNTCHIRDRAAEKVFSELGRLRLVKEARATEGQQTVLAVAG
CVAQAEGKEILARAPFVDIVLGPQTYHRLPEMVARAARAAGAVIDTDFPAEQKFDFLP
DAQAPQSPGGITSFLTIQEGCDKFCSFCVVPYTRGAEASRPVASVLREARRMVECGAR
EITLLGQNVNAYHGEGPDGRVWGLARLAEALAAIPGLARIRYTTSHPRDMDADLIAAH
RDLPALMPFLHLPVQSGSDRILDAMNRGHTAADYRDLVLRLRDARPDIALSSDFIVGH
PGETDADFEATLQLIRDVGFAQAFSFKYSPRPGTPAAGAPLQVAEDVKDARLQALQAL
LRTQQDAFNDGTVGHVVPVLFTGHGRKAGQLSGRSPYLQPVHVEGPDSLIGQIANVEI
RERYTNSLSGTLVQERAFA"
misc_feature complement(78605..79954)
/locus_tag="Gdia_0070"
/note="(dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional; Region: PRK14325"
/db_xref="CDD:184622"
misc_feature complement(79637..79945)
/locus_tag="Gdia_0070"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature complement(78896..79486)
/locus_tag="Gdia_0070"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(78923..78925,79016..79018,79148..79150,
79220..79228,79304..79309,79340..79342,79442..79450,
79454..79456,79460..79462,79466..79468))
/locus_tag="Gdia_0070"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(78620..78799)
/locus_tag="Gdia_0070"
/note="TRAM domain; Region: TRAM; cl01282"
/db_xref="CDD:120537"
gene 80561..82462
/locus_tag="Gdia_0071"
/db_xref="GeneID:6973460"
CDS 80561..82462
/locus_tag="Gdia_0071"
/note="PFAM: surface antigen (D15); surface antigen
variable number repeat protein;
KEGG: gdi:GDI1844 putative surface antigen"
/codon_start=1
/transl_table=11
/product="surface antigen (D15)"
/protein_id="YP_002274488.1"
/db_xref="GI:209542259"
/db_xref="InterPro:IPR000184"
/db_xref="InterPro:IPR010827"
/db_xref="GeneID:6973460"
/translation="MGLVVFVGWMPPPVRGADPQSYVTVIRPTGQGDLDAAISASSSL
LSLQKTKAVSPFALAGRIRNDYDRLRTALESYGYYAATIRIAVGLRAGGHAAPSAPPA
TMDGQDPRLPEWLLAVPKGQAVQVTITPVRGDIFHLGQVTLKPSPEDGTAPIVLNAPE
RTALGVASGHPAIASDVLAGGVNLQAELKEEGHALAQVGTPKAWLRPQTHTLDVEYTV
RRGPIVTIGAIALSGLKRTHPAYIARRITLHPDQLYQPSHIEAARQDLASLGVFSDVQ
ASDAPPLTAGRQMPLNFAFTEGKQRMAEVEGGYSTDLGGRGGVSWTHNNIFGNAERLR
LTTLVTGLGGSAQQGLGYDVYADLLKPDFGDRDQNLSVRVEGIRQLLYSYRQTALLVR
AGIVRHLGRRWTVSFGGEAEQEHIEQMGMSNDYTIVSLPLSATYDSTGLTNPIDPATH
GVRIAASATPSASLISGTSFFTILQATASTYFDLSHVGLSRPGRSVFAFRGVVGSVQG
ASTFEIPPDQRLYAGGSATVRGFRYQGVGPQFPNSKYAIGGTSMDAGTVEFRQRLFRS
FGAALFADAGQVDTGSSPLHGTLRVGAGAGVRYYTPIGPVRVDVAFPLNRPAQGDTWE
LYIGLGETF"
misc_feature 80564..82459
/locus_tag="Gdia_0071"
/note="Outer membrane protein [Cell envelope biogenesis,
outer membrane]; Region: COG0729"
/db_xref="CDD:31073"
misc_feature 81533..82459
/locus_tag="Gdia_0071"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:144626"
gene 82462..86710
/locus_tag="Gdia_0072"
/pseudo
/db_xref="GeneID:6973461"
gene complement(86856..88524)
/locus_tag="Gdia_0073"
/pseudo
/db_xref="GeneID:6973462"
gene complement(88532..88963)
/locus_tag="Gdia_0074"
/db_xref="GeneID:6973463"
CDS complement(88532..88963)
/locus_tag="Gdia_0074"
/note="PFAM: response regulator receiver;
KEGG: gdi:GDI1847 putative two-component response
regulator"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_002274489.1"
/db_xref="GI:209542260"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:6973463"
/translation="MTHLTPTHLPDAVPMDKAPILLVEDDFLIRMALAAYLRERGGFT
VVEADDTATALAAIDAQPCLSILLTDMRIPGPMSGSDVAAAARAKWPDLPVLYVTGTA
ARGDGSAVSANRDSYVGKPFEPSAVLKQVHAMLDPPHGSAP"
misc_feature complement(88559..88924)
/locus_tag="Gdia_0074"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:31127"
misc_feature complement(88559..88903)
/locus_tag="Gdia_0074"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(88601..88606,88613..88615,88667..88669,
88727..88729,88754..88756,88889..88894))
/locus_tag="Gdia_0074"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(88754..88756)
/locus_tag="Gdia_0074"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(88727..88735,88742..88747))
/locus_tag="Gdia_0074"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(88598..88606)
/locus_tag="Gdia_0074"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 89082..90056
/locus_tag="Gdia_0075"
/db_xref="GeneID:6973464"
CDS 89082..90056
/locus_tag="Gdia_0075"
/note="PFAM: fatty acid hydroxylase;
KEGG: gdi:GDI1848 hypothetical protein"
/codon_start=1
/transl_table=11
/product="fatty acid hydroxylase"
/protein_id="YP_002274490.1"
/db_xref="GI:209542261"
/db_xref="InterPro:IPR006694"
/db_xref="GeneID:6973464"
/translation="MIDPFTWLAGWIQENWLIPILYRFGWMEWEDTSFLWAMFAIYGV
LQVVLNLAICMPLERFWPLRTWENRDNVTMDVVYTLIARIGIFPLVTFFGFYEIQTWM
NGVLTDHGYIPPTLESTFPTLMDWPVATFFLYAVILDFADYWRHRLSHVFAWWYGLHA
LHHAQTQMTFWSDDRNHLVDDVISYVWAIAVGLLIGVPPLQFPLLILVLRLVESLSHA
NTRVGFGWLGERLLVSPQFHRVHHGLRSAGRNSCNYGSVFPWWDMILRTANFSHSVVE
TGDPKAEAALVSGGWLAQQAAGLRLSWRLATRRWRRAGAAGSSSPTAR"
misc_feature 89190..89885
/locus_tag="Gdia_0075"
/note="Sterol desaturase [Lipid metabolism]; Region: ERG3;
COG3000"
/db_xref="CDD:32818"
misc_feature 89472..89807
/locus_tag="Gdia_0075"
/note="Fatty acid hydroxylase superfamily; Region:
FA_hydroxylase; pfam04116"
/db_xref="CDD:202893"
gene 90059..90499
/locus_tag="Gdia_0076"
/db_xref="GeneID:6973465"
CDS 90059..90499
/locus_tag="Gdia_0076"
/note="PFAM: transmembrane pair domain protein;
KEGG: gdi:GDI1849 hypothetical protein"
/codon_start=1
/transl_table=11
/product="transmembrane pair domain-containing protein"
/protein_id="YP_002274491.1"
/db_xref="GI:209542262"
/db_xref="InterPro:IPR007896"
/db_xref="GeneID:6973465"
/translation="MRTTRDRIRYVLLFETLGLAMVVPGGQAVLGIRAADMGAIGLGS
TSVAVLWNYIFNRGFDRALLALKGTTHKVLADRLAHAVLYQVGLIVMLVPAIALYLGQ
GLLSAFVANISLTLFYLVYNFAFTWAYDIVFPVPAAALPHGGRA"
misc_feature 90059..90496
/locus_tag="Gdia_0076"
/note="Predicted membrane protein [Function unknown];
Region: COG4125"
/db_xref="CDD:33882"
misc_feature 90062..90265
/locus_tag="Gdia_0076"
/note="Bacterial Transmembrane Pair family; Region: BTP;
pfam05232"
/db_xref="CDD:203217"
misc_feature 90278..90469
/locus_tag="Gdia_0076"
/note="Bacterial Transmembrane Pair family; Region: BTP;
pfam05232"
/db_xref="CDD:203217"
gene complement(90557..91147)
/locus_tag="Gdia_0077"
/db_xref="GeneID:6973466"
CDS complement(90557..91147)
/locus_tag="Gdia_0077"
/note="PFAM: transcription factor CarD;
KEGG: gdi:GDI1850 transcriptional regulator, CarD family"
/codon_start=1
/transl_table=11
/product="CarD family transcriptional regulator"
/protein_id="YP_002274492.1"
/db_xref="GI:209542263"
/db_xref="InterPro:IPR003711"
/db_xref="GeneID:6973466"
/translation="MSMFRTTPKGGVTDAMARTAAAATAAQAKTKVKDEDPFREGDAI
VYAAHGVGRVDRIGIDEIAGTKLEMIQISFPGNQMTLRIPLAKARKAGLRKIVSREIV
DKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNVDSLDGSFSER
KLFEAAQERFVAEVAVLEGKEPTAVLEALTAAMKAA"
sig_peptide complement(91061..91147)
/locus_tag="Gdia_0077"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.860) with cleavage site probability 0.759 at
residue 29"
misc_feature complement(90593..91036)
/locus_tag="Gdia_0077"
/note="CarD-like/TRCF domain; Region: CarD_CdnL_TRCF;
cl00588"
/db_xref="CDD:207120"
gene complement(91209..92084)
/locus_tag="Gdia_0078"
/db_xref="GeneID:6973467"
CDS complement(91209..92084)
/locus_tag="Gdia_0078"
/note="PFAM: protein of unknown function UPF0187;
KEGG: gdi:GDI1851 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274493.1"
/db_xref="GI:209542264"
/db_xref="InterPro:IPR007913"
/db_xref="GeneID:6973467"
/translation="MIVDRRIGLFILMRESLLALAILGAWDVFVVIMFQVYHQDWMEQ
PTLPVSLIGSAVVLFLSVRNTAAYNRWWEARTLWGAITNNCRSFGRQAGSLLGGRPDL
ARAMAAYPYALRGALGRLDCAEDVERLLPPPMQQAIAGWTNQPNAILYQIGLAVNQEV
ARQGIDGAVHGQIDRILSDLANAQGGLERIRNTPLAIQFSLIPRLVANVFCVVLPLSM
VQTLGWITPLGSSLVGLLFVALDKIGSDLQEPFVRSPHAMPMLTMARTIEIDLLQPAG
QPVGGPIAPVRGVQS"
misc_feature complement(91266..92084)
/locus_tag="Gdia_0078"
/note="Bestrophin, RFP-TM, chloride channel; Region:
Bestrophin; pfam01062"
/db_xref="CDD:201579"
gene 92314..93429
/locus_tag="Gdia_0079"
/db_xref="GeneID:6973468"
CDS 92314..93429
/locus_tag="Gdia_0079"
/note="TIGRFAM: S-(hydroxymethyl)glutathione
dehydrogenase/class III alcohol dehydrogenase;
PFAM: Alcohol dehydrogenase zinc-binding domain protein;
Alcohol dehydrogenase GroES domain protein;
KEGG: gdi:GDI1852 putative alcohol dehydrogenase class 3"
/codon_start=1
/transl_table=11
/product="S-(hydroxymethyl)glutathione dehydrogenase/class
III alcohol dehydrogenase"
/protein_id="YP_002274494.1"
/db_xref="GI:209542265"
/db_xref="InterPro:IPR002328"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="InterPro:IPR014183"
/db_xref="GeneID:6973468"
/translation="MDVRAAVAFEAGKPLEIETVQLEGPRAGEVLVEIRATGLCHTDK
FTLSGADPEGLFPAILGHEGAGVVVEVGPGVTHLKPGDHVIPLYTPECRECKSCLSRK
TNLCTAIRSTQGKGLMPDGTSRFSYKGRPIRHYMGCSTFANYTVLPEIALAKIRPDAP
FDKVCYIGCGVTTGIGAVLFTAKVETGSTVVVFGLGGIGLNVIQGARMVGADMIVGVD
INPAREAMARKFGMTHFVNPKDLGPDGDIVGHLVELTGGGADYSFECVGNPTLMRQAL
ECSHRGWGLSTIIGVAGAGQEISTRPFQLVTGRRWIGSAFGGARGRTDVPKIVDWYME
GKINIDDLITHTLPLSRINEGFDLMARGESIRTVVEF"
misc_feature 92323..93426
/locus_tag="Gdia_0079"
/note="S-(hydroxymethyl)glutathione dehydrogenase/class
III alcohol dehydrogenase; Region: adh_III_F_hyde;
TIGR02818"
/db_xref="CDD:131865"
misc_feature 92323..93420
/locus_tag="Gdia_0079"
/note="class III alcohol dehydrogenases; Region:
alcohol_DH_class_III; cd08300"
/db_xref="CDD:176260"
misc_feature order(92431..92433,92437..92439,92464..92472,92497..92499,
92575..92580,92818..92820,93184..93186,93256..93258)
/locus_tag="Gdia_0079"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176260"
misc_feature order(92431..92433,92497..92502,92818..92820)
/locus_tag="Gdia_0079"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176260"
misc_feature order(92434..92439,92818..92820,92830..92832,92893..92907,
92965..92970,92980..92982,93106..93111,93121..93126,
93178..93183,93253..93261,93409..93411)
/locus_tag="Gdia_0079"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:176260"
misc_feature order(92587..92589,92596..92598,92605..92607,92629..92631)
/locus_tag="Gdia_0079"
/note="structural Zn binding site [ion binding]; other
site"
/db_xref="CDD:176260"
misc_feature order(92599..92604,92611..92613,92617..92622,92626..92628,
92632..92634,93079..93081,93094..93096,93127..93132,
93151..93162,93187..93189,93196..93219,93226..93234,
93241..93258)
/locus_tag="Gdia_0079"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176260"
gene 93434..94282
/locus_tag="Gdia_0080"
/db_xref="GeneID:6973469"
CDS 93434..94282
/locus_tag="Gdia_0080"
/EC_number="3.1.2.12"
/note="KEGG: gdi:GDI1853 esterase protein;
TIGRFAM: S-formylglutathione hydrolase;
PFAM: putative esterase"
/codon_start=1
/transl_table=11
/product="S-formylglutathione hydrolase"
/protein_id="YP_002274495.1"
/db_xref="GI:209542266"
/db_xref="InterPro:IPR000801"
/db_xref="InterPro:IPR014186"
/db_xref="GeneID:6973469"
/translation="MPITTRETHACCGGTVGYYSHLSDSLGLEARFAVFVPDGASDAA
RVPVLHVLAGLTCTEETFLIKANAIRFAAEYGIALVATDTSPRGAGIAGEDDSYDFGS
GAGFYLDATQAPWAAHYRMGRYVAEELPALTEAHFPLDGTRRGIMGHSMGGHGALVHA
LRAPDRWKSVSAFAPIVHPAAVPWGEKAFSGYLGPDRATWAAHDATLLLRAGRTHPTT
ILVDQGEADPFLPEQLQPWHLEEAAKAAGQGLILRRHAGYDHSYWFIQSFIQDHLTHH
AAILRR"
misc_feature 93440..94279
/locus_tag="Gdia_0080"
/note="Predicted esterase [General function prediction
only]; Region: COG0627"
/db_xref="CDD:30972"
misc_feature 93455..94273
/locus_tag="Gdia_0080"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(94287..94706)
/locus_tag="Gdia_0081"
/db_xref="GeneID:6973470"
CDS complement(94287..94706)
/locus_tag="Gdia_0081"
/note="PFAM: protein of unknown function UPF0047;
KEGG: gdi:GDI1854 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274496.1"
/db_xref="GI:209542267"
/db_xref="InterPro:IPR001602"
/db_xref="GeneID:6973470"
/translation="MRQALHRLSIATHGKGLVMFTRDVLHWVADTGIETGLLTLWCRH
TSASLTVQENADPTVLEDIKRYFEALVPEAPGRYIHDDEGPDDMPAHLRSMLTQTQLS
IPVADGRPVLGTWQGLYLFEHRRQPHRREIILHLIGE"
misc_feature complement(94296..94646)
/locus_tag="Gdia_0081"
/note="Uncharacterized protein family UPF0047; Region:
UPF0047; pfam01894"
/db_xref="CDD:190153"
gene complement(94731..95726)
/locus_tag="Gdia_0082"
/db_xref="GeneID:6973471"
CDS complement(94731..95726)
/locus_tag="Gdia_0082"
/EC_number="6.1.1.2"
/note="KEGG: gdi:GDI1855 putative tryptophanyl-tRNA
synthetase;
TIGRFAM: tryptophanyl-tRNA synthetase;
PFAM: aminoacyl-tRNA synthetase class Ib"
/codon_start=1
/transl_table=11
/product="tryptophanyl-tRNA synthetase"
/protein_id="YP_002274497.1"
/db_xref="GI:209542268"
/db_xref="InterPro:IPR002305"
/db_xref="InterPro:IPR002306"
/db_xref="GeneID:6973471"
/translation="MQRIFSGIQPTGIPQLGNYLGAIRNWVALQQDHECIFCLVDLHA
ITVWQDPEALRQQTLAQTAVLLAAGIDPKAHILFNQSAVSAHARLGWIFNCVSRLGWL
NRMTQFKDKAGKDRENHSAGLYIYPNLMAADILAYKATRVPVGDDQRQHLELANDIAQ
KFNHDYGVDFFPAIEALIPAGAARVMSLRDGTKKMSKSDPSAQSRIEMTDDADAIALK
IRRAKTDPEPLPTDPADLQSRPEARNLVEIYAVLSGMTVADVLARHGGTGFGPFKAAL
TDVLVAAVTPIGAETRRLLDAPEHLQAVLREGAARANAIAEPIVSEVERLVGFLK"
misc_feature complement(94743..95726)
/locus_tag="Gdia_0082"
/note="tryptophanyl-tRNA synthetase II; Reviewed; Region:
PRK12282"
/db_xref="CDD:183400"
misc_feature complement(94908..95720)
/locus_tag="Gdia_0082"
/note="catalytic core domain of tryptophanyl-tRNA
synthetase; Region: TrpRS_core; cd00806"
/db_xref="CDD:173903"
misc_feature complement(order(95136..95138,95142..95147,95175..95177,
95274..95276,95283..95288,95292..95297,95301..95303,
95328..95330,95337..95339,95349..95351,95487..95489,
95598..95600,95613..95615,95664..95666,95673..95678,
95682..95684,95700..95714))
/locus_tag="Gdia_0082"
/note="active site"
/db_xref="CDD:173903"
misc_feature complement(95673..95684)
/locus_tag="Gdia_0082"
/note="HIGH motif; other site"
/db_xref="CDD:173903"
misc_feature complement(order(95340..95345,95352..95357,95361..95363,
95418..95423,95427..95438,95442..95447,95454..95462,
95466..95471,95589..95594,95601..95603))
/locus_tag="Gdia_0082"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173903"
misc_feature complement(95133..95147)
/locus_tag="Gdia_0082"
/note="KMSKS motif; other site"
/db_xref="CDD:173903"
gene complement(95791..96288)
/locus_tag="Gdia_0083"
/db_xref="GeneID:6973472"
CDS complement(95791..96288)
/locus_tag="Gdia_0083"
/note="PFAM: peptidylprolyl isomerase FKBP-type;
KEGG: gdi:GDI1856 putative peptidyl-prolyl cis-trans
isomerase Mip precursor"
/codon_start=1
/transl_table=11
/product="FKBP-type peptidylprolyl isomerase"
/protein_id="YP_002274498.1"
/db_xref="GI:209542269"
/db_xref="InterPro:IPR000774"
/db_xref="InterPro:IPR001179"
/db_xref="GeneID:6973472"
/translation="MKRLSRFIPLLLASSLALPLAACGGSRPEEYKPEMTPAQFMAKV
RAEPGVQSLPDGLAYKVLKSGPKDGQSPVPGDVMMVIYEGRLPEGGIFDSSDQHGQGA
YMQMPLDGVIKGWMEGLPLMHVGDIWMLYVPPELGYGHRSMGIIPADSPLVFKIQLLG
VSKPQ"
sig_peptide complement(96214..96288)
/locus_tag="Gdia_0083"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.680 at
residue 25"
misc_feature complement(95812..96075)
/locus_tag="Gdia_0083"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; pfam00254"
/db_xref="CDD:201116"
gene complement(96337..97566)
/locus_tag="Gdia_0084"
/db_xref="GeneID:6973473"
CDS complement(96337..97566)
/locus_tag="Gdia_0084"
/EC_number="6.3.4.5"
/note="catalyzes the formation of
2-N(omega)-(L-arginino)succinate from L-citrulline and
L-aspartate in arginine biosynthesis, AMP-forming"
/codon_start=1
/transl_table=11
/product="argininosuccinate synthase"
/protein_id="YP_002274499.1"
/db_xref="GI:209542270"
/db_xref="InterPro:IPR001518"
/db_xref="GeneID:6973473"
/translation="MAVKDVKKVVLAYSGGLDTSVILRWLQTTYGCEVVTFTADLGQG
EELEPARKKAEMFGVKEIFVEDLRETFVKDFVFPMFRANTLYEGQYLLGTSIARPLIA
QRQIEIAEAVGADAVAHGATGKGNDQVRFELAYYALKPDVTVISPWREWDLTSRTRLL
AFAEEHQIPIAKDKRGEAPFSVDANLLHSSSEGKLLEDPAVAPDEIVFQRTISPEAAP
DVATEIAIDFVSGDPVALNGVTLSPATLLARLNELGKANGIGRLDLVENRFVGMKSRG
IYETPGGTILLAAHRSMETITLDREAGHLKDSLMPRYAELIYNGFWFSPERRMLQALI
DESQHSVTGRVRLKLYKGNVICVGRESPHSLYDTRVVTFEDDEGAYNQSDALGFIKLN
ALRLRLGAQIGRRGGAL"
misc_feature complement(96346..97560)
/locus_tag="Gdia_0084"
/note="Argininosuccinate synthase [Amino acid transport
and metabolism]; Region: ArgG; COG0137"
/db_xref="CDD:30486"
misc_feature complement(96382..97542)
/locus_tag="Gdia_0084"
/note="Argininosuccinate synthase. The Argininosuccinate
synthase is a urea cycle enzyme that catalyzes the
penultimate step in arginine biosynthesis: the
ATP-dependent ligation of citrulline to aspartate to form
argininosuccinate, AMP and pyrophosphate . In...; Region:
Argininosuccinate_Synthase; cd01999"
/db_xref="CDD:30186"
misc_feature complement(order(97021..97026,97174..97176,97207..97209,
97273..97275,97438..97440,97450..97452,97456..97458,
97510..97512,97531..97533))
/locus_tag="Gdia_0084"
/note="ANP binding site [chemical binding]; other site"
/db_xref="CDD:30186"
misc_feature complement(order(96613..96615,96733..96735,96769..96771,
96991..96993,96997..96999,97018..97026,97177..97179,
97189..97191,97282..97287,97297..97299))
/locus_tag="Gdia_0084"
/note="Substrate Binding Site II [chemical binding]; other
site"
/db_xref="CDD:30186"
misc_feature complement(order(97186..97194,97201..97206))
/locus_tag="Gdia_0084"
/note="Substrate Binding Site I [chemical binding]; other
site"
/db_xref="CDD:30186"
gene complement(97700..98914)
/locus_tag="Gdia_0085"
/db_xref="GeneID:6973474"
CDS complement(97700..98914)
/locus_tag="Gdia_0085"
/note="TIGRFAM: radical SAM enzyme, Cfr family;
PFAM: Radical SAM domain protein;
KEGG: gdi:GDI1858 hypothetical protein"
/codon_start=1
/transl_table=11
/product="radical SAM enzyme, Cfr family"
/protein_id="YP_002274500.1"
/db_xref="GI:209542271"
/db_xref="InterPro:IPR004383"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:6973474"
/translation="MTAVPAPAQQPAETGLAASMTEVERKRILAKSALFAPPAGVLPD
GRRELVGLSREELTQALVEIGEKPFRTKQLWHWIYHQGVTDFARMSSIAKPLQAKLAE
RFVVGRPDAAMVQTSTDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLS
CTFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPKGDTPRLLSTIVLMGMGEPLY
NYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGSELGINLAISLHAVRNDL
RDEIVPLNRKYPIEDLIAACRRYPTASNARRITFEYIMLRGVNDSEAEARELVRLIAG
IPAKVNLIPFNPWPGSAYKPSTREQLAKFAQIVMDAGFASPIRMPRGRDILAACGQLR
TESERERRNATA"
misc_feature complement(97715..98779)
/locus_tag="Gdia_0085"
/note="Predicted Fe-S-cluster redox enzyme [General
function prediction only]; Region: COG0820"
/db_xref="CDD:31162"
misc_feature complement(97856..98449)
/locus_tag="Gdia_0085"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(97883..97888,97976..97978,98111..98113,
98171..98179,98270..98275,98279..98281,98420..98428,
98432..98434,98438..98440,98444..98446))
/locus_tag="Gdia_0085"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(98996..99736)
/locus_tag="Gdia_0086"
/db_xref="GeneID:6973475"
CDS complement(98996..99736)
/locus_tag="Gdia_0086"
/note="TIGRFAM: hemolysin A;
PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ;
RNA-binding S4 domain protein;
KEGG: gdi:GDI1859 putative hemolysin A"
/codon_start=1
/transl_table=11
/product="hemolysin A"
/protein_id="YP_002274501.1"
/db_xref="GI:209542272"
/db_xref="InterPro:IPR002877"
/db_xref="InterPro:IPR002942"
/db_xref="InterPro:IPR004538"
/db_xref="GeneID:6973475"
/translation="MAKQRADQMLVDRGLVESRTRAQALILAGLVFSGDRRVAKAGDQ
LPEDAPLRLKGQDHPWVSRGGIKLAHALAHFGLSPEGGICLDVGASTGGFTDVLLTHG
AAKIYAVDVGHGQLAWKLRSDPRVTVLEKCNARALDATTIPDPIDVLVCDASFIGLRT
VLPAGLALCRPGAGAVALIKPQFEAGRDAVGPKGVVRDPAIHDAVCATIRDWWSAMPG
WTVLGIEPSPITGPEGNREFLIAARRDG"
misc_feature complement(98999..99733)
/locus_tag="Gdia_0086"
/note="Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis]; Region: COG1189"
/db_xref="CDD:31382"
misc_feature complement(<99560..99727)
/locus_tag="Gdia_0086"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(99599..99601,99605..99628,99647..99649,
99653..99658,99665..99670,99674..99679,99683..99688,
99722..99724))
/locus_tag="Gdia_0086"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature complement(99227..99484)
/locus_tag="Gdia_0086"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(99281..99283,99335..99343,99407..99409,
99458..99478))
/locus_tag="Gdia_0086"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(99769..101772)
/locus_tag="Gdia_0087"
/db_xref="GeneID:6973476"
CDS complement(99769..101772)
/locus_tag="Gdia_0087"
/note="catalyzes the formation of 1-deoxy-D-xylulose
5-phosphate from pyruvate and D-glyceraldehyde
3-phosphate"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose-5-phosphate synthase"
/protein_id="YP_002274502.1"
/db_xref="GI:209542273"
/db_xref="InterPro:IPR005474"
/db_xref="InterPro:IPR005475"
/db_xref="InterPro:IPR005476"
/db_xref="InterPro:IPR005477"
/db_xref="GeneID:6973476"
/translation="MSEQNTGAQPGGSVPTRGRFPLLDRVAYPEDLRNLSVEQLKQLA
EELRAETVDAVSTTGGHLGASLGVVELTVALHAVFDTPADRVIWDVGHQAYPHKILTG
RRERIRTLRQPGGLSGFTRRCESEYDPFGAAHSSTSISAGLGMAVAHHLRAEHDPAYR
ERNVVAVIGDGSISAGMAYEAMNNASVAGPGAGRLIVVLNDNEMSIAPPVGAMSNYLS
RLMSSRQFLGLRDLAGKVARRLPERLERTAKKADEYARGMITGGTLFEELGFYYVGPV
DGHDLNQLVPILRNLRDADDKGPILLHILTEKGRGYRPAESAGDKYHAVAKFNVVTGE
QKKAPPGPPSYTSVFSRELVRRAKQDDTIVAVTAAMPSGTGLDAFARACPDRFFDVGI
AEQHAVTFAAGMATEGLRPFCAIYSTFLQRAYDQVMHDVVLQNLPVRFAIDRAGLVGA
DGATHAGAFDINYLGCLPGMTIMAPSDELELLHMTATACAFDAGPIALRYPRGNGLGL
ALPEAGEILEIGRGRIIREMGRQSGRETGGIAILSLGTRLAEVLKAADMLAAQGLAPT
VADARFAKPLDTALIENLARNHAVLLTIEDGAEGGFGAYVMHHLARTGLLDTIRFRPM
TLPDRFIDHNTQDAQYHQAGLDAPAIAACAMQALGVAASQQTA"
misc_feature complement(99799..101718)
/locus_tag="Gdia_0087"
/note="1-deoxy-D-xylulose-5-phosphate synthase;
Provisional; Region: PRK05444"
/db_xref="CDD:180086"
misc_feature complement(100837..101598)
/locus_tag="Gdia_0087"
/note="Thiamine pyrophosphate (TPP) family, DXS subfamily,
TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate
synthase (DXS) is a regulatory enzyme of the
mevalonate-independent pathway involved in terpenoid
biosynthesis. Terpeniods are plant natural products...;
Region: TPP_DXS; cd02007"
/db_xref="CDD:73294"
misc_feature complement(order(101161..101163,101167..101169,
101257..101268,101368..101370))
/locus_tag="Gdia_0087"
/note="TPP-binding site; other site"
/db_xref="CDD:73294"
misc_feature complement(100267..100731)
/locus_tag="Gdia_0087"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature complement(order(100297..100299,100360..100365,
100411..100413,100420..100422,100495..100500,
100507..100509,100561..100569,100573..100578,
100585..100602,100606..100608,100615..100617,
100666..100668,100684..100686,100690..100692))
/locus_tag="Gdia_0087"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(100369..100371,100375..100380,
100384..100389,100414..100416,100420..100422,
100501..100503,100507..100512,100591..100599,
100606..100608,100666..100668))
/locus_tag="Gdia_0087"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(100507..100509,100516..100518,
100591..100593,100597..100599))
/locus_tag="Gdia_0087"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(99823..100158)
/locus_tag="Gdia_0087"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene complement(101778..102713)
/locus_tag="Gdia_0088"
/db_xref="GeneID:6973477"
CDS complement(101778..102713)
/locus_tag="Gdia_0088"
/note="PFAM: Polyprenyl synthetase;
KEGG: gdi:GDI1861 geranyltranstransferase"
/codon_start=1
/transl_table=11
/product="polyprenyl synthetase"
/protein_id="YP_002274503.1"
/db_xref="GI:209542274"
/db_xref="InterPro:IPR000092"
/db_xref="GeneID:6973477"
/translation="MSQTTATAHMENSADRASLLRSSLSNRATAIEAAIDSLLPPVPG
AEGRVVDAMRYATLGGGKRLRGYLTAEVASLFGVEPARAYRVAASVEMLHAYSLVHDD
LPAMDNDDLRRGQPSTHRKFDEATAILAGDALQTMAFEILTDTATHPSATIRIGLVAA
LAAASGAAGMVGGQMIDMDGEGRALSLPEVERLHALKTGCLIRYAAEAGAILGDADLP
ARARIAAYGRDLGAAFQIADDVLDATASAEELGKTAGKDQAAGKSTYVALLGVDGAAR
EARRVAEQAESHLDVFGAEADRLRNLVQYVVDRRS"
misc_feature complement(<101895..102626)
/locus_tag="Gdia_0088"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature complement(101787..102581)
/locus_tag="Gdia_0088"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(101928..101930,101943..101945,
101958..101960,101988..101990,101997..102002,
102111..102113,102120..102125,102183..102185,
102192..102194,102375..102380,102393..102398,
102408..102416,102420..102428,102435..102437))
/locus_tag="Gdia_0088"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(order(102393..102398,102405..102428))
/locus_tag="Gdia_0088"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(101928..101930,101943..101945,
101958..101960,101988..101990,101997..102002,
102123..102125,102183..102185,102375..102380,
102393..102395,102408..102413))
/locus_tag="Gdia_0088"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(101997..102002,102123..102125,
102375..102380,102393..102395,102408..102413))
/locus_tag="Gdia_0088"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(102123..102125,102183..102185,
102375..102380,102393..102395,102408..102413))
/locus_tag="Gdia_0088"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(101922..101936,101943..101960,
101976..101981,102345..102389))
/locus_tag="Gdia_0088"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(101928..101930,101943..101945,
101958..101960,101988..101990,101997..102002))
/locus_tag="Gdia_0088"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(102721..102951)
/locus_tag="Gdia_0089"
/db_xref="GeneID:6973478"
CDS complement(102721..102951)
/locus_tag="Gdia_0089"
/note="TIGRFAM: exodeoxyribonuclease VII, small subunit;
PFAM: Exonuclease VII small subunit;
KEGG: gdi:GDI1862 putative exodeoxyribonuclease VII small
subunit"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease VII small subunit"
/protein_id="YP_002274504.1"
/db_xref="GI:209542275"
/db_xref="InterPro:IPR003761"
/db_xref="GeneID:6973478"
/translation="MTEDLSQLSFEDALAQLEEIVRQLEGGQLRLQDAIASYERGAAL
RRYCDTKLNEADARVQAIIQRADGALETKSMD"
misc_feature complement(102724..102951)
/locus_tag="Gdia_0089"
/note="exodeoxyribonuclease VII small subunit;
Provisional; Region: PRK00977"
/db_xref="CDD:179195"
gene complement(103092..103349)
/locus_tag="Gdia_0090"
/db_xref="GeneID:6973479"
CDS complement(103092..103349)
/locus_tag="Gdia_0090"
/note="PFAM: SirA family protein;
KEGG: gdi:GDI1863 putative sulfurtransferase TusA"
/codon_start=1
/transl_table=11
/product="SirA family protein"
/protein_id="YP_002274505.1"
/db_xref="GI:209542276"
/db_xref="InterPro:IPR001455"
/db_xref="GeneID:6973479"
/translation="MSETVLDVKGLSCPLPVLKANRALRGMRPGDRLRVVATDRASVA
DFQAFCRETGHALIAFGEDAGVLSFVIRRRPEQAPATDPGS"
misc_feature complement(103131..103337)
/locus_tag="Gdia_0090"
/note="SirA, YedF, and YeeD. Two-layered alpha/beta
sandwich domain. SirA (also known as UvrY, and YhhP)
belongs to a family of bacterial two-component response
regulators that controls secondary metabolism and
virulence. The other member of this...; Region:
SirA_YedF_YeeD; cd00291"
/db_xref="CDD:48205"
misc_feature complement(order(103296..103298,103302..103313,
103320..103322,103329..103334))
/locus_tag="Gdia_0090"
/note="CPxP motif; other site"
/db_xref="CDD:48205"
gene 103478..104401
/locus_tag="Gdia_0091"
/db_xref="GeneID:6973480"
CDS 103478..104401
/locus_tag="Gdia_0091"
/note="PFAM: ROK family protein;
KEGG: gdi:GDI1864 glucokinase protein"
/codon_start=1
/transl_table=11
/product="ROK family protein"
/protein_id="YP_002274506.1"
/db_xref="GI:209542277"
/db_xref="InterPro:IPR000600"
/db_xref="GeneID:6973480"
/translation="MDMTDYRIGIDFGGTKIEIAALARKDGQELVRRRIVNPGYYDGA
ITAIRDLVAGVDTELGGQGTVGIGIPGSISPDTGVIKNANATWLNNQPFGRDLTAAVG
REVRVENDANCFALSEAVDGAGAGFGVVLGVIIGTGMGAGIIVNGKLLIGAHHIAGEW
GHVPLPWPRIEEMPLPKCFCGNEGCLERYLSGSALAQDWKGPGNRSTAGIESAAEDGD
QTAIGALDRYMDRMARACAMAINFLDPDVIVLGGGVSNLQSIYDRVPLLMPRYVITPR
CNTPIVRNRHGDSSGVRGAAWLWSGDEGVGP"
misc_feature 103493..104377
/locus_tag="Gdia_0091"
/note="fructokinase; Reviewed; Region: PRK09557"
/db_xref="CDD:181951"
misc_feature 103499..>103831
/locus_tag="Gdia_0091"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(103508..103519,103523..103525,103529..103531,
103805..103807)
/locus_tag="Gdia_0091"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(104542..105336)
/locus_tag="Gdia_0092"
/db_xref="GeneID:6973481"
CDS complement(104542..105336)
/locus_tag="Gdia_0092"
/note="PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ;
KEGG: gdi:GDI1865 putative ribosomal RNA large subunit
methyltransferase J"
/codon_start=1
/transl_table=11
/product="ribosomal RNA methyltransferase RrmJ/FtsJ"
/protein_id="YP_002274507.1"
/db_xref="GI:209542278"
/db_xref="InterPro:IPR002877"
/db_xref="GeneID:6973481"
/translation="MKRRPPAGGGKKRVPGKALTSSTTPGGASAQADSGAAQSTRNQA
VSLRTARGRTTAQQRWLNRQLNDPYVQAARKQGWRSRAAFKLIELDDRFHLIRPGMRV
IDLGAAPGGWTQVAVKRGAAYVVGVDLLPVDPVAGATIIEGDFNDPDMPARLIDLLGG
PADLVLSDMAPNTTGHAPTDHLRIIGLAELALDFAVKVLAPGGGFVAKVFQGGSEKQM
LAPMKQAFATVRHAKPPASRKESSELYVVATGFRPERISQDDVEAP"
sig_peptide complement(105238..105336)
/locus_tag="Gdia_0092"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.955) with cleavage site probability 0.848 at
residue 33"
misc_feature complement(104572..105159)
/locus_tag="Gdia_0092"
/note="23S rRNA methylase [Translation, ribosomal
structure and biogenesis]; Region: FtsJ; COG0293"
/db_xref="CDD:30641"
misc_feature complement(104707..105036)
/locus_tag="Gdia_0092"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(104833..104835,104902..104910,
105004..105024))
/locus_tag="Gdia_0092"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(105333..106466)
/locus_tag="Gdia_0093"
/db_xref="GeneID:6973482"
CDS complement(105333..106466)
/locus_tag="Gdia_0093"
/note="PFAM: Ppx/GppA phosphatase;
KEGG: gdi:GDI1866 exopolyphosphatase protein"
/codon_start=1
/transl_table=11
/product="Ppx/GppA phosphatase"
/protein_id="YP_002274508.1"
/db_xref="GI:209542279"
/db_xref="InterPro:IPR003695"
/db_xref="GeneID:6973482"
/translation="MDNTMSWRDGQEGPRLPHATGYKANQGVPGMYGAIDLGTNNCRL
MIAAPHEGGFRVVDSFNRVVRLGEGLQSTGQLSGDAMDRTIEALRICAARMGRRRLRR
YRAVATEACRRAGNGAAFIARARRETGLDITVISPREEAELVMESCGALLHDDRLSPA
RTRAMLFDIGGGSTEIAWVRTDHRSRRQDLNGYLSLPAGVITLAEQFGDAAFSEDGYQ
RMVDLVTRQLHAFERVHCIGREISRGNVSLMGTSGTVTTLASIALSLTRYSRTAVDGT
ILQSGPALGAIRTLAAMGPMGLRQHPCVGPDRAAYVLPGCAIFEAIHKIWPVSDIVVA
DRGLRDGMLLRMMHDSTAMALPSLPSSLPFAPSSLSSVGVSHP"
misc_feature complement(105426..106373)
/locus_tag="Gdia_0093"
/note="exopolyphosphatase; Region: exo_poly_only;
TIGR03706"
/db_xref="CDD:188376"
misc_feature complement(105423..106331)
/locus_tag="Gdia_0093"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 106634..106707
/locus_tag="Gdia_R0002"
/note="tRNA-Gln1"
/db_xref="GeneID:6973483"
tRNA 106634..106707
/locus_tag="Gdia_R0002"
/product="tRNA-Gln"
/db_xref="GeneID:6973483"
gene complement(106851..108659)
/locus_tag="Gdia_0094"
/db_xref="GeneID:6973484"
CDS complement(106851..108659)
/locus_tag="Gdia_0094"
/note="KEGG: gdi:GDI1867 putative signalling protein,
GGDEF family;
TIGRFAM: PAS sensor protein; diguanylate cyclase;
PFAM: GGDEF domain containing protein; MASE1 domain
protein; PAS fold-3 domain protein; PAS fold-4 domain
protein; PAS fold domain protein;
SMART: PAS domain containing protein"
/codon_start=1
/transl_table=11
/product="PAS/PAC sensor-containing diguanylate cyclase"
/protein_id="YP_002274509.1"
/db_xref="GI:209542280"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR007895"
/db_xref="InterPro:IPR013655"
/db_xref="InterPro:IPR013656"
/db_xref="InterPro:IPR013767"
/db_xref="GeneID:6973484"
/translation="MTGVFFIRNTLSTLLFCVIWSICALASVTWTRHGGSVSMIWPAN
AILVMAILRMPAFDHRIYPPLLFVLSSLVNLLDGRGWTTSVGFSVANTVEVMMAAVLV
HRISPVSGFFEQVDWAFRFAIAIFVSVACSSVIAGGALFLGEGRDWLGGSAIWMMAHL
PGLLITVPMLLALMPDGEGREIRRNAPRRLTVLGLMVLVACMSVVVFGQSRFPLQFLL
LPPLLLATFHLYAKGAAMSVAIITMIGSFFMFTGAGAVTMLHGPAALKVYVFQLDLAT
IFFCALPLGAVLTQRDQKASLAQQRLQDFHHLADRVGDVLFRVDDAGCWSYLNPAYEQ
MSGISVDKRLGQPMLDAVVIEDRAALAQAQAELQSGSRDDLRQVVSIYRRDGTVRHVE
ILAHRLGEGEGFGGLIRDVTDQLTLDAHNRQIAAAYEQAANTDELTGLPNRRAFFQVL
DGQMAAASSVVAAAMLDLDHFKSINDKYGHPIGDIVLRRVATVVRATLRDTDMVARIG
GEEFAVLITSESRDRAISLIRRVVRAVSAESIDLPTGVRLQVTISAGIACREAGEDRN
ALMSRADQALYVAKRTGRNRLTIADASTAATQAATP"
sig_peptide complement(108579..108659)
/locus_tag="Gdia_0094"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.982 at
residue 27"
misc_feature complement(107787..108644)
/locus_tag="Gdia_0094"
/note="Predicted integral membrane sensor domain [Signal
transduction mechanisms]; Region: COG3447"
/db_xref="CDD:33250"
misc_feature complement(107787..108632)
/locus_tag="Gdia_0094"
/note="MASE1; Region: MASE1; pfam05231"
/db_xref="CDD:113982"
misc_feature complement(107427..107753)
/locus_tag="Gdia_0094"
/note="PAS fold; Region: PAS; pfam00989"
/db_xref="CDD:201538"
misc_feature complement(107421..107723)
/locus_tag="Gdia_0094"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(order(107502..107504,107517..107519,
107598..107609,107646..107648,107664..107666,
107676..107678))
/locus_tag="Gdia_0094"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(107475..107477,107481..107483,
107568..107573,107580..107582,107604..107606,
107616..107618))
/locus_tag="Gdia_0094"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(106902..107363)
/locus_tag="Gdia_0094"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(107130..107132,107259..107261))
/locus_tag="Gdia_0094"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(107127..107138,107142..107144,
107208..107210,107220..107222,107232..107237,
107244..107246))
/locus_tag="Gdia_0094"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(107070..107072,107154..107156))
/locus_tag="Gdia_0094"
/note="I-site; other site"
/db_xref="CDD:143635"
gene complement(108857..109303)
/locus_tag="Gdia_0095"
/db_xref="GeneID:6973485"
CDS complement(108857..109303)
/locus_tag="Gdia_0095"
/note="KEGG: gdi:GDI1869 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274510.1"
/db_xref="GI:209542281"
/db_xref="GeneID:6973485"
/translation="MTIPAWMAGATRKECGTIGTPATQRPHRRGVGIGLSLLMGVLPL
ALPHGTRAQDNAANAERVTVEGEIRRVPVFFHRADVETLWRARHLVTRLDRAALEACG
DNNAIAEEMRRAIERSDCRRDAVMRAVKDVNAVTLDRAVARYGLPQ"
gene complement(109518..110234)
/locus_tag="Gdia_0096"
/db_xref="GeneID:6973486"
CDS complement(109518..110234)
/locus_tag="Gdia_0096"
/note="KEGG: gdi:GDI1871 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274511.1"
/db_xref="GI:209542282"
/db_xref="GeneID:6973486"
/translation="MFGWPKKKNLSRHGTPDGRSKILITGTGRAGTTMLMQLFTALDF
HTGYTFEQAMKEVDPISHAGLENLDFGPESPYVLKSPNYADLLLPMVQEGQVKIHAAI
VPMRNLYSAAESRRRVTRDAARTGFDPEIEYPGGLWLTRTHDEQESILAIQFYKIMWG
LTLFGVRPYMVEFPKFAEKSDYLWTQLEQLMNEHGVTESEFRAAFGRILRKDLIHTFQ
PVTASPPMEITGELSDKRKT"
gene complement(110416..110490)
/locus_tag="Gdia_R0003"
/note="tRNA-Thr3"
/db_xref="GeneID:6973487"
tRNA complement(110416..110490)
/locus_tag="Gdia_R0003"
/product="tRNA-Thr"
/db_xref="GeneID:6973487"
gene 110772..110990
/locus_tag="Gdia_0097"
/db_xref="GeneID:6973488"
CDS 110772..110990
/locus_tag="Gdia_0097"
/note="KEGG: gdi:GDI1873 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274512.1"
/db_xref="GI:209542283"
/db_xref="GeneID:6973488"
/translation="MMLNSTIIEIDGIFLGTAILVAGSRLLRFYAVHDSVRALHNQVL
PDLAALRHAVGLHFRRVLKRRGRPDQGC"
gene complement(111022..112287)
/locus_tag="Gdia_0098"
/db_xref="GeneID:6973489"
CDS complement(111022..112287)
/locus_tag="Gdia_0098"
/note="catalyzes the formation of 3-phosphonooxypyruvate
from 3-phospho-D-glycerate in serine biosynthesis; can
also reduce alpha ketoglutarate to form
2-hydroxyglutarate"
/codon_start=1
/transl_table=11
/product="D-3-phosphoglycerate dehydrogenase"
/protein_id="YP_002274513.1"
/db_xref="GI:209542284"
/db_xref="InterPro:IPR006139"
/db_xref="InterPro:IPR006140"
/db_xref="GeneID:6973489"
/translation="MSSETTSHLSLPKDKIRILLLEGIHDSAVALLKANGYENVTRLS
KALEGAALRKALEGVHIVGIRSRTQLTEDMIAAADRLIAVGCFCIGTNQVNLPAARAH
GIPVFNAPFSNTRSVAELVMGEIVMLMRRIFPKSVQCHAGDWNKSAANSWEVRGKTLG
IVGYGSIGSQLSVLAEAFGMRVIYFDVIDKLVHGNASPVETLNDLLAQSDVVSLHVPQ
LASTANLIGAEQIRAMKPGSFLINNARGNVVDLEALAAALRDGHLLGAAIDVFPVEPK
GAGDKFVSPLQGLENVILSPHIGGSTAEAQERIGVEVARKLIEYSDVGSTLGAVNFPT
VQLPESPRGTRFMHVHSNVPGIMLQINEIFMSENSNITAQYLQTDGELGYVVVEADTG
RDIDKDNRILGRLRNLKGTIRARLLYQQP"
misc_feature complement(111034..112272)
/locus_tag="Gdia_0098"
/note="D-3-phosphoglycerate dehydrogenase; Provisional;
Region: PRK11790"
/db_xref="CDD:183316"
misc_feature complement(111391..111924)
/locus_tag="Gdia_0098"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
misc_feature complement(111037..111255)
/locus_tag="Gdia_0098"
/note="C-terminal ACT (regulatory) domain of
D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi
and bacteria; Region: ACT_3PGDH; cd04901"
/db_xref="CDD:153173"
misc_feature complement(order(111178..111180,111232..111234,
111238..111240))
/locus_tag="Gdia_0098"
/note="L-serine binding site [chemical binding]; other
site"
/db_xref="CDD:153173"
misc_feature complement(order(111154..111174,111178..111180,
111205..111207,111214..111219,111226..111228,
111232..111234))
/locus_tag="Gdia_0098"
/note="ACT domain interface; other site"
/db_xref="CDD:153173"
gene complement(112402..113226)
/locus_tag="Gdia_0099"
/db_xref="GeneID:6973490"
CDS complement(112402..113226)
/locus_tag="Gdia_0099"
/note="PFAM: inositol monophosphatase;
KEGG: gdi:GDI1875 inositol-1-monophosphatase"
/codon_start=1
/transl_table=11
/product="inositol monophosphatase"
/protein_id="YP_002274514.1"
/db_xref="GI:209542285"
/db_xref="InterPro:IPR000760"
/db_xref="GeneID:6973490"
/translation="MSLATPLPPHDADRLVAAAMAAADVAGCVIRPFFRMGVAADDKS
DQSPVTIADRTAERAIRAVLAERLPDHAVLGEEFGLERGGARYCWVIDPVDGTRAFLT
GRPIFGTLIALLQDGEPVLGIIDQPVTGERWIGVRGRPTRYESRWPGTAGTRECPEIG
LAELSCTSPEMIADAPTPHWDALRRHAKRVTWGGDCYSYGLLALGQVDIIAECTMKIW
DWAALVPVIEGAGGRVTDWHGRPLHADSDGTVLAVGDPALLPGVVSLLTTGSPKHA"
misc_feature complement(112450..113148)
/locus_tag="Gdia_0099"
/note="Predominantly bacterial family of Mg++ dependend
phosphatases, related to inositol monophosphatases. These
enzymes may dephosphorylate fructose-1,6-bisphosphate,
inositol monophospate, 3'-phosphoadenosine-5'-phosphate,
or similar substrates; Region: Bacterial_IMPase_like_1;
cd01641"
/db_xref="CDD:30139"
misc_feature complement(order(112570..112575,112936..112938,
112942..112953,112996..113001,113068..113070))
/locus_tag="Gdia_0099"
/note="active site"
/db_xref="CDD:30139"
gene complement(113229..113756)
/locus_tag="Gdia_0100"
/db_xref="GeneID:6973491"
CDS complement(113229..113756)
/locus_tag="Gdia_0100"
/note="PFAM: cytochrome c class I;
KEGG: gdi:GDI1876 putative cytochrome c homolog"
/codon_start=1
/transl_table=11
/product="cytochrome c class I"
/protein_id="YP_002274515.1"
/db_xref="GI:209542286"
/db_xref="InterPro:IPR002327"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:6973491"
/translation="MDSKDVNRIGAAILVAALALGASAWAGYVAIPSGTPGHPAFVLP
QPAVAADASGPAAAPPSIADAVAHADPKAGQALAARMCAMCHSFAKDGPAMIGPDLYG
VPGTAIGDMPGYEFSAALAAHKAERWTDDALSSWLEGPGRFAPGTRMAFPGVADAADR
AAIIAFLHTLSDGAH"
sig_peptide complement(113676..113756)
/locus_tag="Gdia_0100"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.814 at
residue 27"
misc_feature complement(113238..>113549)
/locus_tag="Gdia_0100"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene 113930..114673
/locus_tag="Gdia_0101"
/db_xref="GeneID:6973492"
CDS 113930..114673
/locus_tag="Gdia_0101"
/EC_number="2.7.7.38"
/note="PFAM: acylneuraminate cytidylyltransferase;
KEGG: gdi:GDI1877 putative 3-deoxy-manno-octulosonate
cytidylyltransferase"
/codon_start=1
/transl_table=11
/product="3-deoxy-manno-octulosonate cytidylyltransferase"
/protein_id="YP_002274516.1"
/db_xref="GI:209542287"
/db_xref="InterPro:IPR003329"
/db_xref="GeneID:6973492"
/translation="MNPIVVIPARMASTRLPGKPLAMIGKLPMILHVLARARAADIGP
VIVAVAETELARVVEDAGGTAVLTDPALPSGSDRVWQAVRAADPAGRHDVVVNLQGDL
PGVAPPTLAASLLPLADPATDIGTLVCPVADAGEAARDSVVKVACAFADDDARTVARA
LYFSRAAVPWGAGALWHHVGIYAYRRAALARFVSLPEAALERRERLEQLRALEAGMTI
GCCRIGTAPFGVDTPDDLDRARRVMAEAA"
misc_feature 113930..114661
/locus_tag="Gdia_0101"
/note="3-deoxy-manno-octulosonate cytidylyltransferase;
Provisional; Region: PRK05450"
/db_xref="CDD:180091"
misc_feature order(113951..113953,113957..113959,114071..114073,
114224..114226,114230..114232)
/locus_tag="Gdia_0101"
/note="active site"
/db_xref="CDD:132997"
gene 114670..115533
/locus_tag="Gdia_0102"
/db_xref="GeneID:6973493"
CDS 114670..115533
/locus_tag="Gdia_0102"
/EC_number="4.2.1.51"
/note="catalyzes the formation of phenylpyruvate from
prephenate in phenylalanine biosynthesis"
/codon_start=1
/transl_table=11
/product="prephenate dehydratase"
/protein_id="YP_002274517.1"
/db_xref="GI:209542288"
/db_xref="InterPro:IPR001086"
/db_xref="InterPro:IPR002912"
/db_xref="GeneID:6973493"
/translation="MSGVIAFQGRPGAYSDLACRQAYPGWTTLPCETFAGAIAAVHDG
QADLAMLACENSLAGRVPDIHALLPQAGLNIIGEHFQRVEHCLMGVPGSTLAGARRVH
THPVAMAQIRGIITELNLTPVVEFDTAGSAELIAQWGNPEDVAVASSLAAELNGLVVL
RGNVEDAAHNTTRFYVASRTALRPPAGRPGTITTVLFRVRNVAGALYKVLGGFATNGV
NMTRLESYMLDGSFAATQFLMEVEGHPDDAPLRGALAELAFFSETSTILGVYPGSPFR
AEHAQGQTAGQ"
misc_feature 114670..115500
/locus_tag="Gdia_0102"
/note="prephenate dehydratase; Provisional; Region:
PRK11899"
/db_xref="CDD:183367"
misc_feature 114682..115206
/locus_tag="Gdia_0102"
/note="Prephenate dehydratase; Region: PDT; pfam00800"
/db_xref="CDD:144409"
misc_feature 115246..115482
/locus_tag="Gdia_0102"
/note="C-terminal ACT domain of the bifunctional
chorismate mutase-prephenate dehydratase (CM-PDT) enzyme
and the prephenate dehydratase (PDT) enzyme; Region:
ACT_CM-PDT; cd04905"
/db_xref="CDD:153177"
misc_feature order(115279..115290,115339..115350)
/locus_tag="Gdia_0102"
/note="putative L-Phe binding site [chemical binding];
other site"
/db_xref="CDD:153177"
gene 115676..116557
/locus_tag="Gdia_0103"
/db_xref="GeneID:6973494"
CDS 115676..116557
/locus_tag="Gdia_0103"
/EC_number="4.2.1.52"
/note="catalyzes the formation of dihydrodipicolinate from
L-aspartate 4-semialdehyde and pyruvate in lysine and
diaminopimelate biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate synthase"
/protein_id="YP_002274518.1"
/db_xref="GI:209542289"
/db_xref="InterPro:IPR002220"
/db_xref="InterPro:IPR005263"
/db_xref="GeneID:6973494"
/translation="MFKGSITALITPMNDDGSLDFSGFGRFVDWQVTEGSSGVVPVGT
TGESPTLTHEEHARIVEYTVQVVAGRIPVIAGAGSNSTAEAVGMARHAKSVGADGVLV
VAPYYNKPTQEGLYRHFMTVADATDLPLIIYNIPGRSVVDISVETMARMAQHARIVGV
KDATANLLRPLQVRRAIRHKPFTQLSGEDGTVVSFLAAGGEGCISVTSNIAPRLCAEL
HRAWQDGRVADAMAIQDRLSAVHDALFCESNPGPVKYAASLLGLAGETCRLPLAPLAE
DSRMRVREALTGAGLLN"
misc_feature 115679..116533
/locus_tag="Gdia_0103"
/note="Dihydrodipicolinate synthase (DHDPS); Region:
DHDPS; cd00950"
/db_xref="CDD:188637"
misc_feature 115685..116536
/locus_tag="Gdia_0103"
/note="dihydrodipicolinate synthase; Region: dapA;
TIGR00674"
/db_xref="CDD:129757"
misc_feature order(115802..115816,115913..115915,115919..115921,
115988..115996,116081..116083,116087..116089,
116420..116425,116477..116479,116483..116485)
/locus_tag="Gdia_0103"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188637"
misc_feature order(115805..115810,116072..116074,116087..116089,
116156..116158,116234..116236,116240..116242)
/locus_tag="Gdia_0103"
/note="active site"
/db_xref="CDD:188637"
misc_feature 116156..116158
/locus_tag="Gdia_0103"
/note="catalytic residue [active]"
/db_xref="CDD:188637"
gene 116562..117050
/gene="smpB"
/locus_tag="Gdia_0104"
/db_xref="GeneID:6973495"
CDS 116562..117050
/gene="smpB"
/locus_tag="Gdia_0104"
/note="binds to ssrA RNA (tmRNA) and is required for its
successful binding to ribosomes; also appears to function
in the trans-translation step by promoting accommodation
of tmRNA into the ribosomal A site; SmpB protects the
tmRNA from RNase R degradation in Caulobacter crescentus;
both the tmRNA and SmpB are regulated in cell
cycle-dependent manner; functions in release of stalled
ribosomes from damaged mRNAs and targeting proteins for
degradation"
/codon_start=1
/transl_table=11
/product="SsrA-binding protein"
/protein_id="YP_002274519.1"
/db_xref="GI:209542290"
/db_xref="InterPro:IPR000037"
/db_xref="GeneID:6973495"
/translation="MAEKKKSGMISTGIAAQNRKGRFNYTILETLEAGMVLKGPEVKS
LRLGRATINEAYAGDRDGEIWLFNSYIPEYQGGVLSRFETRAPRKLLLHRKQVDKLLG
AVARDGVTLVPLDIHFNARGVAKVTLGIGEGRKKADKRQAIADRDWQRDKARLLRNKG
RE"
misc_feature 116613..116963
/gene="smpB"
/locus_tag="Gdia_0104"
/note="Small protein B (SmpB) is a component of the
trans-translation system in prokaryotes for releasing
stalled ribosome from damaged messenger RNAs; Region:
SmpB; cd09294"
/db_xref="CDD:187755"
misc_feature order(116655..116672,116676..116681,116685..116690,
116697..116699,116748..116750,116832..116849,
116934..116936)
/gene="smpB"
/locus_tag="Gdia_0104"
/note="SmpB-tmRNA interface; other site"
/db_xref="CDD:187755"
gene complement(117115..117729)
/locus_tag="Gdia_0105"
/db_xref="GeneID:6973496"
CDS complement(117115..117729)
/locus_tag="Gdia_0105"
/note="PFAM: Cold-shock protein DNA-binding;
SMART: Cold shock protein;
KEGG: gdi:GDI1881 cold shock-like protein CspE"
/codon_start=1
/transl_table=11
/product="cold-shock DNA-binding domain-containing
protein"
/protein_id="YP_002274520.1"
/db_xref="GI:209542291"
/db_xref="InterPro:IPR002059"
/db_xref="InterPro:IPR011129"
/db_xref="GeneID:6973496"
/translation="MSSPSFGDRSGGGAPRRPMGGGAPSQVIASGPEISAAVKWFNSE
KGFGFVELSDGSGDVFLHANALATSGHDSVSPGTTLVVRIGQGPKGRQVASVVSVDDS
TAQPERPRGFGAPRAAAGGFGGRPSRPAPDLSQAQEMRGVVKWYNATKGFGFITPESG
GKDIFVHASALERSGLTGLTEGQTANVQVVQGQKGPEAASISVD"
misc_feature complement(117448..117618)
/locus_tag="Gdia_0105"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein; Region:
CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature complement(order(117463..117465,117550..117552,
117583..117585,117610..117612))
/locus_tag="Gdia_0105"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:88424"
misc_feature complement(order(117544..117555,117574..117594))
/locus_tag="Gdia_0105"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
misc_feature complement(117121..117315)
/locus_tag="Gdia_0105"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein; Region:
CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature complement(order(117148..117150,117235..117237,
117268..117270,117295..117297))
/locus_tag="Gdia_0105"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:88424"
misc_feature complement(order(117229..117240,117259..117279))
/locus_tag="Gdia_0105"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene 118178..119227
/locus_tag="Gdia_0106"
/db_xref="GeneID:6973497"
CDS 118178..119227
/locus_tag="Gdia_0106"
/note="KEGG: gdi:GDI1883 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274521.1"
/db_xref="GI:209542292"
/db_xref="GeneID:6973497"
/translation="MEGKLMSQAKTWKRTGWMVRAGTLAGIGSLAMAAQPARATPLQD
PYGTWTVQGENDAVSTLNGTSDQYYTSGLRVNWTSGTDNQPAPIETINHAIMGKGVTR
ISLGVQQLIFTPHDTQLATPSPSDRPYAGLLLGTVNLINDTDLSRSVFGIQFGVMGPD
AMGRQLQNGFHSAIGDTSNLGWKHQLANQPVFQVQGGRTWRLPMANIYGVEMDMMPAT
SAAIGDYRIYGTVADTFRIGQGLRSDFGIPTIGPGTDGTDAYRLTRPVAWYVFGNVTG
SAVAYDATLQGNTLRSGSPHVPMNWDVGEIHAGVAIMWHGMRLSYSQVWQTQEFRGAR
SGLFNYGSLALSGKF"
sig_peptide 118178..118297
/locus_tag="Gdia_0106"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.739 at
residue 40"
misc_feature 118373..119224
/locus_tag="Gdia_0106"
/note="Uncharacterized protein conserved in bacteria
(DUF2219); Region: DUF2219; pfam09982"
/db_xref="CDD:204366"
gene complement(119233..121362)
/locus_tag="Gdia_0107"
/db_xref="GeneID:6973498"
CDS complement(119233..121362)
/locus_tag="Gdia_0107"
/note="PFAM: helicase domain protein; nucleic acid binding
OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain
protein;
SMART: DEAD-like helicases;
KEGG: gdi:GDI1884 putative ATP-dependent DNA helicase
RecG"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase"
/protein_id="YP_002274522.1"
/db_xref="GI:209542293"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:6973498"
/translation="MKAVEHHVSGIILQDERGDNLGPLLAPLGSLPGVGPALAKLLAR
AVRGQRVIDLLFHLPESVVDRRYRPSLRDAVPGRVATMQVTVRRIDAPARGTRQPWRV
LVSDGAGTAELVFFSSYQARRMRVGSAVAVSGTLDAFGDRLQMAHPDHIVPGGDIDRI
PALEPVWPLTAGLFPRHVRAALHQAFLPFPPLPEWLDSVLVARRHWPNFETALRQLHC
PEAFPDLLRGDAWQAAGERARQRLACDELLAEQVAMSEARRRNRNRPGRSIVGTGTLR
AEALARFGYTPTRAQHRAVREIDSDLAASYPMMRLLQGDVGAGKTLVAMLAMLAAAEA
GHQAVLMAPTEILARQHLATFQKLAPVPVAFLSGSVKGRARRTVLEDIASGRAPLVVG
THALFQDKVVFDDLALAVIDEQHRFGVEQRLLLGEKGDRADILVMTATPIPRTLLLTQ
WGEMQVSRLNEKPAGRLPVRTSLHAMASLGDVLDGIGRAIARGALVFWVCPLVTESEA
MDLAAAEARFAALTERFGPIVGLAHGQQDIAVREAAIADFAAGRTKILVATTVIEVGV
DIPAATIMVIEHAERFGLAQLHQLRGRVGRGRDESFCLLLHDDALGSTARRRLALLRD
TEDGFLIADEDFRLRGGGDVTGRRQSGLPDLRLATGARLDLLLTIAAQDAQRVAEGGA
SESRRNAIAQLLELFDRHDAARILRSG"
misc_feature complement(119326..121215)
/locus_tag="Gdia_0107"
/note="ATP-dependent DNA helicase RecG; Provisional;
Region: PRK10917"
/db_xref="CDD:182836"
misc_feature complement(120904..121122)
/locus_tag="Gdia_0107"
/note="RecG_wedge_OBF: A subfamily of OB folds
corresponding to the OB fold found in the N-terminal
(wedge) domain of Escherichia coli RecG. RecG is a
branched-DNA-specific helicase, which catalyzes the
interconversion of a DNA replication fork to a...; Region:
RecG_wedge_OBF; cd04488"
/db_xref="CDD:72960"
misc_feature complement(order(120907..120909,120964..120966,
120970..120972,120976..120978,121120..121122))
/locus_tag="Gdia_0107"
/note="generic binding surface II; other site"
/db_xref="CDD:72960"
misc_feature complement(order(120928..120930,121006..121008,
121015..121017,121066..121068,121087..121089))
/locus_tag="Gdia_0107"
/note="ssDNA binding site; other site"
/db_xref="CDD:72960"
misc_feature complement(120040..120435)
/locus_tag="Gdia_0107"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(120400..120414)
/locus_tag="Gdia_0107"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(120118..120129)
/locus_tag="Gdia_0107"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(119545..>119778)
/locus_tag="Gdia_0107"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(119680..119688,119761..119766))
/locus_tag="Gdia_0107"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(119575..119577,119584..119586,
119596..119598,119662..119664))
/locus_tag="Gdia_0107"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 121491..121802
/locus_tag="Gdia_0108"
/db_xref="GeneID:6973499"
CDS 121491..121802
/locus_tag="Gdia_0108"
/note="PFAM: protein of unknown function DUF339;
KEGG: gdi:GDI1885 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274523.1"
/db_xref="GI:209542294"
/db_xref="InterPro:IPR005631"
/db_xref="GeneID:6973499"
/translation="MSIDSPDLTNLDPRRRRLYFRATHRGTHETDILIGGFVAPRLAG
LTDAEMDALEEVMELPDADLADWLSGRKPVPAEVDGPMMRAIMADANDPARQAAIRGE
R"
misc_feature 121518..121754
/locus_tag="Gdia_0108"
/note="Flavinator of succinate dehydrogenase; Region:
Sdh5; cl01110"
/db_xref="CDD:207312"
gene 121799..125269
/locus_tag="Gdia_0109"
/db_xref="GeneID:6973500"
CDS 121799..125269
/locus_tag="Gdia_0109"
/note="KEGG: gdi:GDI1886 putatve transcription-repair
coupling factor;
TIGRFAM: transcription-repair coupling factor;
PFAM: helicase domain protein; transcription factor CarD;
TRCF domain protein; DEAD/DEAH box helicase domain
protein;
SMART: DEAD-like helicases"
/codon_start=1
/transl_table=11
/product="transcription-repair coupling factor"
/protein_id="YP_002274524.1"
/db_xref="GI:209542295"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR003711"
/db_xref="InterPro:IPR004576"
/db_xref="InterPro:IPR005118"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:6973500"
/translation="MRAPGTEHAGWATIWGAPDGFDAFLVARRAREHDGPVLHVARDD
AGMARIGELLSFVAPNAEILRFPSWDCLPYDRVSPNPAIVAERVATLTRLLEPATAPR
IVLTTVGGLVQRVAPRAAFRGQSLTLAAGDSLDQALLIDLLVAAGYNRTDTVMEPGEF
ATRGGIFDIFPSGEAEPVRLDLFGDEVENIRRFDPATQRSSDRLDRFVMRPVADFTLD
QASISRFRTGWRDLFGPAAASDPLYEHVSDGRRHAGLEHWLPLFHEHLETLVDYLPGV
SIILAHQVEDVLAARLEMIADHFEARRQPVREGEVPYRALPPHLMYLDRKGWDGILSG
HPVMLFSPFARPDNAGGVDAGGRPGILFASVAGGGARENVFAMLDTQVRQWAETGRRA
YVSAWTRGSRERIATLLREHGMRVETFDGWARAQDLPPGTVGLLTLGLERGFIADNLA
FVSEQDLLGERISRPPRRRKKADQFIAEASEIAEGDLVVHQDYGIGRYDGLETIGVGT
APHDCLRLIYDGNEKLFLPVENIELLSRFGSDQAGVALDKLGGASWQNRKARMKQRIR
DMAGELIRTAALRALREAPSMTPAEGMWDEFCARFPFVETEDQSRAIADVLEDMGSGR
PMDRLVCGDVGFGKTEVALRAAFVAALSGAQVAVVVPTTLLARQHFRTFSARFSGLPI
TVAQLSRMVTPKEATAVRKGLADGTINIVIGTHALLAKGVQFADLELLIIDEEQHFGV
AHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIATPPTDRLAVRTFIMPFD
SVVIREAIQRERFRGGQIFCVVPRIEDLDRMAARLQDIVPDARLVQAHGRLTPTELER
VMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQLRGRVGRGKQRG
YAYLTWPQTHVLSAAAEKRLEVMQTLDTLGAGFTLASHDLDLRGAGNLLGDEQSGHIR
EVGIELYQQMLEDAVAELRVEKGRRKAQDRDWTPNIILGLPVLIPETYVPDLPVRLGL
YRRIAGLANDAEIEAMEAELVDRFGTMPDEVRNLLDVVAIKRLCREAGVERLEAGPKG
MVIQFRGNSFANPGGLVTWIAAHKEGNVRLRPDHKLALVREMTNAQRIRLAKDTVQTL
GRLAGQEKAA"
misc_feature 121844..125248
/locus_tag="Gdia_0109"
/note="Transcription-repair coupling factor (superfamily
II helicase) [DNA replication, recombination, and repair /
Transcription]; Region: Mfd; COG1197"
/db_xref="CDD:31390"
misc_feature 123239..123529
/locus_tag="Gdia_0109"
/note="CarD-like/TRCF domain; Region: CarD_TRCF;
smart01058"
/db_xref="CDD:198126"
misc_feature 123674..124084
/locus_tag="Gdia_0109"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 123701..123715
/locus_tag="Gdia_0109"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 123995..124000
/locus_tag="Gdia_0109"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 124166..124552
/locus_tag="Gdia_0109"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(124259..124270,124334..124339,124412..124420)
/locus_tag="Gdia_0109"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(124436..124438,124502..124504,124514..124516,
124523..124525)
/locus_tag="Gdia_0109"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 124826..125122
/locus_tag="Gdia_0109"
/note="This domain is found in proteins necessary for
strand-specific repair in DNA such as TRCF in Escherichia
coli; Region: TRCF; smart00982"
/db_xref="CDD:198050"
gene 125328..126122
/locus_tag="Gdia_0110"
/db_xref="GeneID:6973501"
CDS 125328..126122
/locus_tag="Gdia_0110"
/note="PFAM: short-chain dehydrogenase/reductase SDR;
KEGG: gdi:GDI1887 3-oxoacyl-[acyl-carrier-protein]
reductase"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_002274525.1"
/db_xref="GI:209542296"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="GeneID:6973501"
/translation="MKIDLAGKSAIVTGSTAGIGLAIAVALAETGAEVIVNGRSQARV
DEAMAHIRVRMPTARLRGVPGDLGTGEGIDSFIRTIPQADILVNNLGIFEQEDFLKTS
DADWQRFFDVNVMSGVRLTRHYLPGMVERKWGRVVFISSESALNIPADMIAYGFTKAA
QVAIARGIAESVPGTGVTVNSVLPGPTRTEGVMEMFEKAARESGRTVQDVVDEFIPAH
RPTSLIRRLAEPEEIASMVAYVCSPQASATTGATLRVEGGLLRHPG"
sig_peptide 125328..125414
/locus_tag="Gdia_0110"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.985) with cleavage site probability 0.954 at
residue 29"
misc_feature 125334..126101
/locus_tag="Gdia_0110"
/note="short chain dehydrogenase; Provisional; Region:
PRK06523"
/db_xref="CDD:180604"
misc_feature 125346..126110
/locus_tag="Gdia_0110"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature order(125367..125369,125373..125378,125382..125384,
125439..125447,125592..125600,125742..125750,
125787..125789,125799..125801,125877..125888)
/locus_tag="Gdia_0110"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(125664..125666,125748..125750,125787..125789,
125799..125801)
/locus_tag="Gdia_0110"
/note="active site"
/db_xref="CDD:187535"
gene complement(126137..127060)
/locus_tag="Gdia_0111"
/db_xref="GeneID:6973502"
CDS complement(126137..127060)
/locus_tag="Gdia_0111"
/note="KEGG: gdi:GDI1888 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274526.1"
/db_xref="GI:209542297"
/db_xref="GeneID:6973502"
/translation="MRILSLSAVLAGLLAAAGPAGATPLPETCAQARTGGLSVSGNVA
AARDYVLRFSPGGEAPSLHARMVTVKGGDAAGTDARDILNAASLVLLGALTNHHGAGC
PSEYFASSVGPLLNGLKAGQGYDVAWTAPVVNNGGARLSFAALHLHLGGAELGGPVVV
ALDVRDAQASGNTVLASLLPQQARSNFSIPAQSLGPLLAATAGHPARSVLVPVTITTL
MAQHGDLRLNGRGTAMLTGNADANSAAGHLSLSNLPELIATLRAAGQARATTALILAN
LVGRHADADTSWDVEWQGGVLTINQIPLPLR"
sig_peptide complement(126992..127060)
/locus_tag="Gdia_0111"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.997 at
residue 23"
gene 127178..128164
/locus_tag="Gdia_0112"
/db_xref="GeneID:6973503"
CDS 127178..128164
/locus_tag="Gdia_0112"
/note="KEGG: gdi:GDI1889 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274527.1"
/db_xref="GI:209542298"
/db_xref="GeneID:6973503"
/translation="MFKPDPFLLSLICTVLLATIVPCHGAAVPMFQDLAIAVIAVMFF
LQGARLSRQAVLGGIVNWRLHLAILLCTFALFPLLGMGLHALFPHLLHQSVWLGILFL
CCLPSTVQSSIAFTSIARGNVPAAVCAATTSNIAGIFITPVLTGLVLERQGAASGHGG
VLAIMMQLLLPFVLGQVLQPWLGAWAHRNKRLLSMTDRGSILIVVYTAFSEAVVQGLW
HKLPLSQIGLVMVVDGVLLAAVLLATTMGSRVLGFPREDEIAIVFCGSKKTLASGVPM
ANVLFAPATVGLVVLPLMIYHQIQLFVCAVLARRYAAAHDRLAEAEAVVERA"
misc_feature 127178..128110
/locus_tag="Gdia_0112"
/note="Predicted Na+-dependent transporter [General
function prediction only]; Region: COG0385"
/db_xref="CDD:30734"
sig_peptide 127178..127255
/locus_tag="Gdia_0112"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.997 at
residue 26"
misc_feature 127190..128110
/locus_tag="Gdia_0112"
/note="SBF-like CPA transporter family (DUF4137); Region:
DUF4137; pfam13593"
/db_xref="CDD:205771"
gene complement(128161..128964)
/locus_tag="Gdia_0113"
/db_xref="GeneID:6973504"
CDS complement(128161..128964)
/locus_tag="Gdia_0113"
/note="KEGG: gdi:GDI1890 putative hydrolase protein"
/codon_start=1
/transl_table=11
/product="putative hydrolase protein"
/protein_id="YP_002274528.1"
/db_xref="GI:209542299"
/db_xref="GeneID:6973504"
/translation="MFFGQLELMELAWGAGQCRARLGGKGPLLVFLHGQVQSHVAWHA
VAPAFSRTHTVLCPDLPHHFDFSQQARDLLRAAHALGHDRLAIVGHGTGGHVAAHAAA
QAPHRVTHVAEIECIPSPSHHGRTDLAFELSQYQACWFAQLHPKPESATVTIPEAWTR
PEPDSAGPFNRSAVADYLDKVPPGQSPGATGHFRIPPYPADLRIGCPVLVAWSRDGRL
GGWYDPTDLWRPYATGPVTGVELACGYYIPEEAPQALADTLTSFLAPKA"
misc_feature complement(128191..128880)
/locus_tag="Gdia_0113"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene 129092..130534
/locus_tag="Gdia_0114"
/db_xref="GeneID:6973505"
CDS 129092..130534
/locus_tag="Gdia_0114"
/note="PFAM: Pyridoxal-dependent decarboxylase;
KEGG: gdi:GDI1891 putative tyrosine decarboxylase"
/codon_start=1
/transl_table=11
/product="pyridoxal-dependent decarboxylase"
/protein_id="YP_002274529.1"
/db_xref="GI:209542300"
/db_xref="InterPro:IPR002129"
/db_xref="InterPro:IPR010977"
/db_xref="GeneID:6973505"
/translation="MTGLDPDNWDDLRSLGHRMVDDMIDRLATLRDGPVWRPMPPEIR
TALHTDLPAAPTPPEALYDRFRDQIAPYATGNTHPGFMGWVHGGGTGVGMLAELLAGG
LNANCGGRDHAPVEIERTVIGWAAEIMGFPADATGVLVTGSSMANMIAVITASRAVAD
GITLRQRGVGGRQLVGYAAATAHGCIARAFDLAGLGTDALRIIPVDSTHRMDIQALRA
AVESDRQQGFEPFIVIGTAGTVDTGSIDDLGAIADIAGQEDIWFHVDGAFGALAMLSR
TLRPHLRGLDRADSLAFDFHKWAQVPYDAGCILVREPGRQAAAFAQSLAYLSREDRGL
AGNAPWFCDLGPDLSRGFRALKVWMTLGTYGTVRLGQMVDECCAVAAHLARRVDREPL
LERLAPVGLNIVCFRVRVPDVELDWLNGELVKDLHESGIAAPSTTMVGGVKAIRAAIV
NHRTVAADVDLMVDAVLRLAQERQGLGQRA"
misc_feature 129425..130453
/locus_tag="Gdia_0114"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature <129437..130453
/locus_tag="Gdia_0114"
/note="Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism]; Region:
GadB; COG0076"
/db_xref="CDD:30425"
misc_feature order(129518..129523,129530..129532,129797..129799,
129884..129886,129893..129895,129971..129973,
129980..129982)
/locus_tag="Gdia_0114"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 129980..129982
/locus_tag="Gdia_0114"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(130556..132457)
/locus_tag="Gdia_0115"
/db_xref="GeneID:6973506"
CDS complement(130556..132457)
/locus_tag="Gdia_0115"
/EC_number="6.6.1.2"
/note="KEGG: gdi:GDI1892 putative cobalamin biosynthesis
protein CobT;
TIGRFAM: cobalt chelatase, pCobT subunit;
PFAM: Cobalt chelatase CobT subunit;
SMART: von Willebrand factor type A"
/codon_start=1
/transl_table=11
/product="cobalt chelatase large subunit"
/protein_id="YP_002274530.1"
/db_xref="GI:209542301"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR006538"
/db_xref="GeneID:6973506"
/translation="MRDRKDTTQSARLAAAERADVFKRATVGALRALGGRATAEVTFQ
TGPIPPAAAVSGDHVRLPQPALQLAEADIRRVRGAADAVALQLRHHDVTIHNATRPEQ
ADARLAYDALEQARVESFGARHMAGVAANLRNQAERDYHDRGYDRAQARDQIPVQVAL
SLLARERMTGEPVPESMRAMAEQWRAHLGPSALRALDDMAAHQDDQMAFSRAAKRLLV
ACELIEGEAEIEEDEDGDDSAPSDETEEEPGEAPEKPQPQDEDASGQQEDETGLQPQL
AQGAGAGDDNPDESEPGGTAGSEEAGGPRGTDDQEATDPASLYHAFTTAFDEEIAAED
LCDADELARLRQQLDHQLLSLQGVVSRLANRLQRRLLAQQTRAWEFDLEEGILDAGRL
SRVVVNPTLSLSYKHERDTDFRDTVVTLLIDNSGSMRGRPISVAAMCGDILARTLERC
AVKVEVLGFTTRAWKGGQSRERWVAQGKPANPGRLNDLRHIIYKSADMPWRRARKNLG
LMLREGLLKENIDGEALLWAWRRLQGRPESRKILMVISDGAPVDDSTLSVNAGSYLET
HLRQVIAQIENRSGVELVAIGIGHDVTRYYRRAVTISDAEELGGTMMQKLSELFDEKV
AVAGRRRIA"
misc_feature complement(<131807..132304)
/locus_tag="Gdia_0115"
/note="Cobalamin biosynthesis protein CobT; Region: CobT;
pfam06213"
/db_xref="CDD:148051"
misc_feature complement(130589..132301)
/locus_tag="Gdia_0115"
/note="cobaltochelatase, CobT subunit; Region: CobT;
TIGR01651"
/db_xref="CDD:130712"
misc_feature complement(130598..131212)
/locus_tag="Gdia_0115"
/note="norD type: Denitrifying bacteria contain both
membrane bound and periplasmic nitrate reductases.
Denitrification plays a major role in completing the
nitrogen cycle by converting nitrate or nitrite to
nitrogen gas. The pathway for microbial...; Region:
vWA_norD_type; cd01454"
/db_xref="CDD:29227"
misc_feature complement(order(130817..130819,130901..130903,
131177..131179,131183..131185,131189..131191))
/locus_tag="Gdia_0115"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29227"
gene complement(132473..133504)
/locus_tag="Gdia_0116"
/db_xref="GeneID:6973507"
CDS complement(132473..133504)
/locus_tag="Gdia_0116"
/EC_number="6.6.1.2"
/note="KEGG: gdi:GDI1893 putative aerobic cobaltochelatase
CobS;
TIGRFAM: cobalt chelatase, pCobS small subunit;
PFAM: ATPase associated with various cellular activities
AAA_5"
/codon_start=1
/transl_table=11
/product="cobalt chelatase small subunit"
/protein_id="YP_002274531.1"
/db_xref="GI:209542302"
/db_xref="InterPro:IPR006537"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:6973507"
/translation="MNDLATLTAGSTAENGDDLPPISVLSAPDRTVSARDVFGIDSDL
QVPAFSVRTDHVPDADPTYRFDHDTTLAILAGFAFNRRVMIQGYHGTGKSSHVEQVAS
RLNWPCVRINLDSHISRIDLIGKDAIVLRDGKQVTEFREGLLPWGLQHPCALVFDEYD
AGRPDVMFVIQRVLEVEGHLTLLDQNRVIRPHPFFRLFATANTVGLGDTTGLYHGTQQ
INQGQMDRWNVVTTLNYLPHAEETAIVVAKMAVDPSDAPARKRIESMVALADLTRSGF
IAGDISTVMSPRTVISWAENARIFKDLEFAFRVSFLNKCDEAERPTVAEYYQRCFNVD
PTGTAPRAR"
misc_feature complement(133337..133444)
/locus_tag="Gdia_0116"
/note="Cobaltochelatase CobS subunit N terminal; Region:
CobS_N; pfam12556"
/db_xref="CDD:152990"
misc_feature complement(132476..133423)
/locus_tag="Gdia_0116"
/note="cobaltochelatase, CobS subunit; Region: PD_CobS;
TIGR01650"
/db_xref="CDD:130711"
misc_feature complement(132884..133258)
/locus_tag="Gdia_0116"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene complement(133657..134187)
/locus_tag="Gdia_0117"
/db_xref="GeneID:6973508"
CDS complement(133657..134187)
/locus_tag="Gdia_0117"
/note="PFAM: heat shock protein DnaJ domain protein;
KEGG: gdi:GDI1894 putative chaperone protein DnaJ"
/codon_start=1
/transl_table=11
/product="heat shock protein DnaJ domain-containing
protein"
/protein_id="YP_002274532.1"
/db_xref="GI:209542303"
/db_xref="InterPro:IPR001623"
/db_xref="GeneID:6973508"
/translation="MAGCAEAAGYRAPRSRDALNEYFWFCLPHVREYNSRWDFYKGMS
PGQIEAHIRDDVSWNRPSWRLGQRGAHFSEEDILDPLDLMNGGRRPAARRAASARPEV
PEALRQPLDTLGLDWPLSMDELKLRYKDLARRHHPDTNGGDREAEERLKSINVAYTAL
RTHLASARAADLERTA"
misc_feature complement(133708..133857)
/locus_tag="Gdia_0117"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(133723..133728,133735..133740,
133747..133749,133774..133782))
/locus_tag="Gdia_0117"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
gene 134270..134665
/locus_tag="Gdia_0118"
/db_xref="GeneID:6973509"
CDS 134270..134665
/locus_tag="Gdia_0118"
/note="PFAM: BolA family protein;
KEGG: gdi:GDI1895 BolA-like protein"
/codon_start=1
/transl_table=11
/product="BolA family protein"
/protein_id="YP_002274533.1"
/db_xref="GI:209542304"
/db_xref="InterPro:IPR002634"
/db_xref="GeneID:6973509"
/translation="MRPDRIRARAKRASQEEDRPVSDTERNRATRIGQALHARLTPAI
LEIEDDSARHAGHAGARHAGRGPETTGETHYNILLVSGAFGGISRVQRSRLVHDLLAD
EFASGLHALSLTLRTPDEHAALAAGTAGA"
misc_feature 134369..134629
/locus_tag="Gdia_0118"
/note="BolA-like protein; Region: BolA; pfam01722"
/db_xref="CDD:201935"
gene 134662..135270
/locus_tag="Gdia_0119"
/db_xref="GeneID:6973510"
CDS 134662..135270
/locus_tag="Gdia_0119"
/note="PFAM: outer membrane lipoprotein carrier protein
LolA;
KEGG: gdi:GDI1896 putative outer membrane lipoprotein
carrier protein LolA"
/codon_start=1
/transl_table=11
/product="outer membrane lipoprotein carrier protein LolA"
/protein_id="YP_002274534.1"
/db_xref="GI:209542305"
/db_xref="InterPro:IPR004564"
/db_xref="GeneID:6973510"
/translation="MIVRNGPTRRLVLTAPLALAACQAAPGPVGGRDVARIERYLNTT
RGLSAHVAQTWPDGGVGEGTLSYDPGYLRLDYDTPHRMRLVAAGGHLVFRDAVRQSVT
RMNLSRQPLGLLLATPVHLGGEVTVTAIQHGDHVLQVSLARTANPSQGLLTLGFSDFA
GQLSLVAIDILDERHNRTRLHLTDQRTGTAFPADFFSLTAEL"
sig_peptide 134662..134736
/locus_tag="Gdia_0119"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.992) with cleavage site probability 0.949 at
residue 25"
misc_feature 134752..135258
/locus_tag="Gdia_0119"
/note="Outer membrane lipoprotein-sorting protein [Cell
envelope biogenesis, outer membrane]; Region: LolA;
COG2834"
/db_xref="CDD:32662"
gene complement(135273..135971)
/gene="lipB"
/locus_tag="Gdia_0120"
/db_xref="GeneID:6973511"
CDS complement(135273..135971)
/gene="lipB"
/locus_tag="Gdia_0120"
/note="lipoyl/octanoyltransferase; catalyzes the transfer
of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto
lipoate-dependent enzymes like pyruvate dehydrogenase and
the glycine cleavage system H protein"
/codon_start=1
/transl_table=11
/product="lipoate-protein ligase B"
/protein_id="YP_002274535.1"
/db_xref="GI:209542306"
/db_xref="InterPro:IPR000544"
/db_xref="InterPro:IPR004143"
/db_xref="GeneID:6973511"
/translation="MHDRRAMTEKTILWNSSPGLVPYPDAIAGMEHQVAGIRDGSAPE
RVWLLEHPPTFTAGTSARDEDLFNPHHFPTYAAGRGGQWTYHGPGQRVAYVMLDLTAP
HGVVPARDLRAYVHTLEEWLIRTLRRFDVTGERRADRIGVWVVDARTGAENKIAALGV
RVSRWTCWHGVALNVAPNLDDFGGIVPCGIREHGVTSLHALGHKVSLGDVDEALRATW
QDLFGSVPTPIGTA"
misc_feature complement(135300..135941)
/gene="lipB"
/locus_tag="Gdia_0120"
/note="lipoate-protein ligase B; Provisional; Region:
PRK14341"
/db_xref="CDD:184635"
gene 136027..136112
/locus_tag="Gdia_R0004"
/note="tRNA-Leu1"
/db_xref="GeneID:6973512"
tRNA 136027..136112
/locus_tag="Gdia_R0004"
/product="tRNA-Leu"
/db_xref="GeneID:6973512"
gene 136436..137308
/locus_tag="Gdia_0121"
/db_xref="GeneID:6973513"
CDS 136436..137308
/locus_tag="Gdia_0121"
/note="TIGRFAM: UTP-glucose-1-phosphate
uridylyltransferase;
PFAM: Nucleotidyl transferase;
KEGG: gdi:GDI1898 UTP--glucose-1-phosphate
uridylyltransferase"
/codon_start=1
/transl_table=11
/product="UTP-glucose-1-phosphate uridylyltransferase"
/protein_id="YP_002274536.1"
/db_xref="GI:209542307"
/db_xref="InterPro:IPR005771"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:6973513"
/translation="MIKPLRKAVLPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAID
EARAAGIEEFCLITGRGKDSLIDYFDVAFELETTLRERNKLDALEALGPTSIEAGALS
AVRQQEPLGLGHAIWCARSFIGDDPFAILLPDDVVKSDVPCLKQLVDVYNQTGGNVLA
VTEVPREHTNRYGILKTGEDDGRLVEVKGLVEKPKPEDAPSNLSIIGRYILTADVMPH
LSKLERGAGGEVQLTDAMAKVIGHAPFHGLRYEGRRFDCGNKVGYLEAQIAFSIDRPD
LGDAVRAFLKNYTG"
misc_feature 136451..137245
/locus_tag="Gdia_0121"
/note="Prokaryotic UGPase catalyses the synthesis of
UDP-glucose; Region: UGPase_prokaryotic; cd02541"
/db_xref="CDD:133021"
misc_feature 136451..137233
/locus_tag="Gdia_0121"
/note="dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane]; Region: RfbA; COG1209"
/db_xref="CDD:31402"
misc_feature order(136466..136477,136517..136522,136751..136753,
136760..136771,136829..136831,136835..136840,
136949..136954,137009..137014,137048..137050,
137132..137134)
/locus_tag="Gdia_0121"
/note="active site"
/db_xref="CDD:133021"
misc_feature order(136478..136480,136487..136501,136505..136513,
136523..136531,136535..136543,136553..136555,
136625..136627,136631..136639,136643..136645,
136655..136660,136745..136750,136754..136756,
136760..136762,136946..136948,137120..137122,
137192..137194,137210..137218,137222..137230,
137234..137242)
/locus_tag="Gdia_0121"
/note="tetramer interface; other site"
/db_xref="CDD:133021"
gene 137314..138723
/locus_tag="Gdia_0122"
/db_xref="GeneID:6973514"
CDS 137314..138723
/locus_tag="Gdia_0122"
/EC_number="5.4.2.8"
/note="PFAM: phosphoglucomutase/phosphomannomutase ;
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain I; phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain II;
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain III;
KEGG: gdi:GDI1899 phosphomannomutase"
/codon_start=1
/transl_table=11
/product="phosphomannomutase"
/protein_id="YP_002274537.1"
/db_xref="GI:209542308"
/db_xref="InterPro:IPR005841"
/db_xref="InterPro:IPR005843"
/db_xref="InterPro:IPR005844"
/db_xref="InterPro:IPR005845"
/db_xref="InterPro:IPR005846"
/db_xref="InterPro:IPR016066"
/db_xref="GeneID:6973514"
/translation="MSFTHRFDPTTLREYDIRGIVGRTVRPEDAFAIGRTFGSIVARS
GGRTVAVGYDGRLSSPMLEEALVRGAAASGLEILRVGRGPTPMLYFAAVTLETDGAIM
VTGSHNPPDYNGFKMMLSGSPFFGAQIAELGDLAARGDVVAASAGTVRDVDVGRAYVA
RLMADWDGGGRRLKIVWDNGNGAAGDILADLLARLPGDHVLLNGAVDGTFPDHHPDPT
VARNLEHLIATVRETGADIGIAFDGDADRIGVVDDTGEIVWADQLLVILARDMLRHHP
GATIIADVKASQTLFDEITRAGGTPLMWRTGHSLIKSKMAETGSPLGGEMSGHVFFAD
RWYGFDDALYAAIRLLGLVAHMETRLSAVRAALPVTISTRETRFECADTRKFSVIEDV
AARLKVDGGAVSMIDGVRVTTPDGWWLLRASNTQPALVARAEGNTHAGLDRLKAALVA
QLERSGVAAPDFSGDDAGH"
misc_feature 137350..138669
/locus_tag="Gdia_0122"
/note="The phosphomannomutase/phosphoglucomutase (PMM/PGM)
bifunctional enzyme catalyzes the reversible conversion of
1-phospho to 6-phospho-sugars (e.g. between
mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a...;
Region: PMM_PGM; cd03089"
/db_xref="CDD:100091"
misc_feature order(137350..137352,137356..137358,137365..137367,
137629..137637,137659..137661,138037..138039,
138043..138045,138049..138054,138166..138168,
138229..138237,138286..138288,138292..138294,
138298..138300,138574..138576,138580..138588)
/locus_tag="Gdia_0122"
/note="active site"
/db_xref="CDD:100091"
misc_feature 137356..138645
/locus_tag="Gdia_0122"
/note="phosphoglucosamine mutase; Region: Arch_GlmM;
TIGR03990"
/db_xref="CDD:211895"
misc_feature order(137356..137358,137365..137367,137629..137631,
138052..138054,138166..138168,138229..138231,
138235..138237,138286..138288,138292..138294,
138298..138300,138574..138576,138580..138588)
/locus_tag="Gdia_0122"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100091"
misc_feature order(137629..137631,138037..138039,138043..138045,
138049..138051)
/locus_tag="Gdia_0122"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100091"
gene 138809..138994
/locus_tag="Gdia_0123"
/db_xref="GeneID:6973515"
CDS 138809..138994
/locus_tag="Gdia_0123"
/note="KEGG: gdi:GDI1900 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274538.1"
/db_xref="GI:209542309"
/db_xref="GeneID:6973515"
/translation="MPVIPPFRSFLEPGQFVVHPDHPEWGRGQVQSAVAHRVTVNFEH
QGKILIDASVIMLTVIS"
misc_feature 138839..138988
/locus_tag="Gdia_0123"
/note="Protein of unknown function (DUF3553); Region:
DUF3553; pfam12073"
/db_xref="CDD:152508"
gene 139005..140021
/locus_tag="Gdia_0124"
/db_xref="GeneID:6973516"
CDS 139005..140021
/locus_tag="Gdia_0124"
/note="KEGG: gdi:GDI1901 putative molybdenum cofactor
biosynthesis protein A;
TIGRFAM: molybdenum cofactor biosynthesis protein A;
PFAM: Radical SAM domain protein; molybdenum cofactor
synthesis domain protein;
SMART: Elongator protein 3/MiaB/NifB"
/codon_start=1
/transl_table=11
/product="molybdenum cofactor biosynthesis protein A"
/protein_id="YP_002274539.1"
/db_xref="GI:209542310"
/db_xref="InterPro:IPR000385"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR010505"
/db_xref="InterPro:IPR013483"
/db_xref="GeneID:6973516"
/translation="MGKPFVDSFGRTVSYLRISVTDRCDMRCVYCMSEAMSFLPKAEI
LSFEEMERLCAAFIRNGVTRIRVTGGEPLVRRDIDGFFAALGTWLHRTDGDGHLDELT
LTTNGSHLATHADALARAGVQRVNISLDSLDSERFQRITRRGRLEQTLEGIRAARAAG
LAIRINTVAMAGVNDDEFDTLLAWCGEIGADLCLIETMPMGDTGEDRSDRYLPLSTVR
ADLARRWTLEPLTVRTGGPARYLRVGETGCKLGLITPMTHNFCESCNRVRLSCTGQLY
TCLGHEGATDLRQPLRDGTTDPDLLRLVQAAIQRKPKGHDFLIGRHADDPAAIRRHMS
VTGG"
misc_feature 139005..140018
/locus_tag="Gdia_0124"
/note="molybdenum cofactor biosynthesis protein A;
Reviewed; Region: moaA; PRK00164"
/db_xref="CDD:178909"
misc_feature 139056..>139541
/locus_tag="Gdia_0124"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(139074..139076,139080..139082,139086..139088,
139092..139100,139206..139208,139212..139217,
139314..139322,139386..139388,139506..139508)
/locus_tag="Gdia_0124"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 139572..139952
/locus_tag="Gdia_0124"
/note="Molybdenum Cofactor Synthesis C; Region:
Mob_synth_C; pfam06463"
/db_xref="CDD:115139"
gene complement(140056..140925)
/locus_tag="Gdia_0125"
/db_xref="GeneID:6973517"
CDS complement(140056..140925)
/locus_tag="Gdia_0125"
/note="PFAM: Methyltransferase type 11; Methyltransferase
type 12;
KEGG: gdi:GDI1902 methyltransferase"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_002274540.1"
/db_xref="GI:209542311"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:6973517"
/translation="MPSMNDPVIFDRRAVRRHRDRAAPMVHEIAPVLEEVADRLLDRL
DDTTYRFTAALDIGGRGVVAPRLRARGIGSVVSCDLSPRMARINGGTVLCADEEWLPF
GPGSFDLVVANLSLHWVNDLPGALAQIRHALKPDGLFLASLPVLPSLSDLRRALTEAE
AALTGGATPRVSPFPDLRDCAALLQRAGFALPVADAETVTLAYRSPFRLLQDLRAAGE
TNALVLRSRQFTQPDLFPAAFAALASAAGDDPLSVPLRLAIMTGWSPDASQPQPLRPG
QFTVSLEDAIKKI"
misc_feature complement(140353..140763)
/locus_tag="Gdia_0125"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature complement(140488..140763)
/locus_tag="Gdia_0125"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(140587..140589,140638..140643,
140686..140691,140740..140751,140752..140757))
/locus_tag="Gdia_0125"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 141012..141794
/locus_tag="Gdia_0126"
/db_xref="GeneID:6973518"
CDS 141012..141794
/locus_tag="Gdia_0126"
/note="KEGG: gdi:GDI1903 putative
phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="putative phosphoribosyltransferase"
/protein_id="YP_002274541.1"
/db_xref="GI:209542312"
/db_xref="InterPro:IPR002375"
/db_xref="GeneID:6973518"
/translation="MARRLGSLLLDGLLPPDCPLCHQPVERAGLLCPDCFRHMRFISE
PCCDACGEPFAGAGFAGSVLGGAGRICASCADRRPPWRAGRAALVYDEWSRALILRLK
YADRTELAPLLGRHMARIGQGMLGQADLLVPVPLHRRRLFRRRYNQAALLARAVGRTV
GLRTLPDALIRPQATPPLARLGPASRRDILHGAIAVRPSRRAAIANRRIVLVDDVMTT
GATTGECARVLLAAGAASVDVLVAARAPDPGRDPSQDTGQHP"
misc_feature 141096..141749
/locus_tag="Gdia_0126"
/note="Predicted amidophosphoribosyltransferases [General
function prediction only]; Region: ComFC; COG1040"
/db_xref="CDD:31242"
misc_feature <141621..141761
/locus_tag="Gdia_0126"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(141648..141656,141660..141674,141744..141746)
/locus_tag="Gdia_0126"
/note="active site"
/db_xref="CDD:206754"
gene 141857..142117
/locus_tag="Gdia_0127"
/db_xref="GeneID:6973519"
CDS 141857..142117
/locus_tag="Gdia_0127"
/note="TIGRFAM: glutaredoxin 3;
PFAM: glutaredoxin;
KEGG: gdi:GDI1904 glutaredoxin-3"
/codon_start=1
/transl_table=11
/product="glutaredoxin 3"
/protein_id="YP_002274542.1"
/db_xref="GI:209542313"
/db_xref="InterPro:IPR002109"
/db_xref="InterPro:IPR011767"
/db_xref="InterPro:IPR011900"
/db_xref="InterPro:IPR014025"
/db_xref="GeneID:6973519"
/translation="MPRIEIYTQPGCPYCVRALRLLEQKGTAFTEIRALLGTAERAEA
RERSGGRTTVPQIFIDGRHIGGCDDIMALDRAGKLDPLLHAA"
misc_feature 141866..142087
/locus_tag="Gdia_0127"
/note="Glutaredoxin (GRX) family, GRX bacterial class 1
and 3 (b_1_3)-like subfamily; composed of bacterial GRXs,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the...; Region:
GRX_GRXb_1_3_like; cd03418"
/db_xref="CDD:48633"
misc_feature order(141881..141883,141890..141898,142004..142006,
142013..142018)
/locus_tag="Gdia_0127"
/note="GSH binding site [chemical binding]; other site"
/db_xref="CDD:48633"
misc_feature order(141890..141892,141899..141901)
/locus_tag="Gdia_0127"
/note="catalytic residues [active]"
/db_xref="CDD:48633"
gene 142151..142657
/locus_tag="Gdia_0128"
/db_xref="GeneID:6973520"
CDS 142151..142657
/locus_tag="Gdia_0128"
/note="PFAM: protein of unknown function DUF1178;
KEGG: gdi:GDI1905 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274543.1"
/db_xref="GI:209542314"
/db_xref="InterPro:IPR009562"
/db_xref="GeneID:6973520"
/translation="MIRYLLRCDAGHEFDGWFPGSAAFDDQVRRDLLSCPQCGTTDVG
RALMAPAVRTRPARPPVTQPAGQQVVREQPAAAPAAHMPAGPPPSVQGAGVPAALTAA
LQTLRRHVEQQCEDVGDRFAEEALKIHHGEAEERGIYGHASDEDYHRLTDEGVEIVTI
PWVRRADS"
misc_feature 142151..142654
/locus_tag="Gdia_0128"
/note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS;
cl00993"
/db_xref="CDD:207275"
gene 142704..143270
/locus_tag="Gdia_0129"
/db_xref="GeneID:6973521"
CDS 142704..143270
/locus_tag="Gdia_0129"
/note="KEGG: gdi:GDI1906 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274544.1"
/db_xref="GI:209542315"
/db_xref="GeneID:6973521"
/translation="MKRMHDRTDMHDRTDRPAAFVPSGTGHRHNAARWVSALACLTLL
AGIAAAPARADAGPDADAGTGTLSVLGMWETREHDGVFRIASCGGQLCGHLVGMRYTG
EVPKARDGGSECGLLMLTGFTPDSDEPGRWNGHILDPDTNKVYHAQIWSPRDGVLKLR
GYVGIPLFGETHTWTRYTGTIGQRCQMP"
sig_peptide 142704..142868
/locus_tag="Gdia_0129"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.816) with cleavage site probability 0.800 at
residue 55"
misc_feature 142914..143231
/locus_tag="Gdia_0129"
/note="Uncharacterized protein conserved in bacteria
(DUF2147); Region: DUF2147; pfam09917"
/db_xref="CDD:204338"
gene 143316..144560
/locus_tag="Gdia_0130"
/db_xref="GeneID:6973522"
CDS 143316..144560
/locus_tag="Gdia_0130"
/note="KEGG: gdi:GDI1907 putative
6-phosphogluconolactonase"
/codon_start=1
/transl_table=11
/product="putative 6-phosphogluconolactonase"
/protein_id="YP_002274545.1"
/db_xref="GI:209542316"
/db_xref="InterPro:IPR006311"
/db_xref="GeneID:6973522"
/translation="MTMPFSRRNLLLALAASGTAPLASSLTGPRPARAAIPAMSRTLC
YIGGYNKHAPPGGAGNGQGIAIFEMNRVTGGLIPVSTFMDIASPSFITMSADSRFLYA
LSEIDDFNADHDGSVTAFSVDRTSGELNRLNVVSSGGAVPAHLSVHRAGHHVLVANYV
GGSVGVLPIRPDGSLGEPTDVVHNTGPHMPERAEDNPPGNFAISDHSGSHVHMVASDP
SGRFVVACDAGLDRVYVWTLDLASGKLRPAATPFINLIPGSAPRHFAFSKDGRTIYIL
CEQDSKVVVASFDPRTGALVPQQKVSTVTSYFQGSTLAAEILISPNGRYVYASNRLGD
SLAIFRVGPDGSLTLIDEVWMHADYGRAMVFDPSGTFLYCANQRSDSVTSFRVNPETG
ALDFNWHFTAIGSPTTFAFLQI"
sig_peptide 143316..143420
/locus_tag="Gdia_0130"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.952 at
residue 35"
misc_feature 143448..144548
/locus_tag="Gdia_0130"
/note="Lactonase, 7-bladed beta-propeller; Region:
Lactonase; pfam10282"
/db_xref="CDD:204433"
gene complement(144688..145449)
/locus_tag="Gdia_0131"
/db_xref="GeneID:6973523"
CDS complement(144688..145449)
/locus_tag="Gdia_0131"
/EC_number="2.1.1.64"
/note="Involved in ubiquinone biosynthesis"
/codon_start=1
/transl_table=11
/product="3-demethylubiquinone-9 3-methyltransferase"
/protein_id="YP_002274546.1"
/db_xref="GI:209542317"
/db_xref="InterPro:IPR007848"
/db_xref="InterPro:IPR010233"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:6973523"
/translation="MNVNDSSSRAAHPAGHSVAPDEIARFSALADRWWDPSGPMRPLH
AMNGLRLDWARRHLPAPGTPGEPATRLLDIGCGAGLASEGLARMGYDVTGLDASDAAI
AAARAHLADHPLPPDGGSLAYRVGSAEELQAEGARFAAITALEVIEHVTDPAAFLRVL
ADMVAPGGVIIVSTLNRTLRSLATAKIGAEYILRLLPAGTHEWRKFITPAELGAFASQ
AGLRVSDIAGMVPALGGWRESHDLGVNYIASLSAP"
misc_feature complement(144691..145404)
/locus_tag="Gdia_0131"
/note="bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional; Region: PRK05134"
/db_xref="CDD:179944"
misc_feature complement(144931..145242)
/locus_tag="Gdia_0131"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(145018..145020,145066..145074,
145159..145164,145210..145230))
/locus_tag="Gdia_0131"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 145606..146859
/locus_tag="Gdia_0132"
/db_xref="GeneID:6973524"
CDS 145606..146859
/locus_tag="Gdia_0132"
/EC_number="2.7.2.4"
/note="KEGG: gdi:GDI1909 aspartokinase protein;
TIGRFAM: aspartate kinase; aspartate kinase,
monofunctional class;
PFAM: aspartate/glutamate/uridylate kinase; amino
acid-binding ACT domain protein"
/codon_start=1
/transl_table=11
/product="aspartate kinase"
/protein_id="YP_002274547.1"
/db_xref="GI:209542318"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001341"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR005260"
/db_xref="GeneID:6973524"
/translation="MPRTVPRIVMKFGGTSVADLDRIRAVAEKVHKQVAAGCEVAVVV
SAMSGVTNRLVGYCQSLSPLHDAKEYDAVVATGEQVTSGLLAIALQTLGLEARSWLGW
QIPLRTDGAHGKARIDSIDGEALITRMRAGQVPVIAGFQGVDPDGRITTLGRGGSDTS
AVALAAALQADRCDIYTDVDGIYTTDPRIVARARKLDKITYEEMLELASVGAKVLQTR
SVELAMKERVRVQVLSSFSDGPAPSEDNLPGSLVVDEDEIVEKELVAGIAYSRDEAKL
SVRRIPDRPGIAAAIFGPLTAANVNVDMIVQSTGADGLTNMTFTTGKTDLARAIQALE
AARDVIQYGEMATDDDVVKISVVGVGMRSHAGVANTMFRTLSDRNINIQVISTSEIKV
SVLIAAEYTELAVRALHTAYGLDAA"
misc_feature 145621..146850
/locus_tag="Gdia_0132"
/note="aspartate kinase; Reviewed; Region: PRK06635"
/db_xref="CDD:180641"
misc_feature 145624..146325
/locus_tag="Gdia_0132"
/note="AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily
(AAK), AKii; this CD includes the N-terminal catalytic
aspartokinase (AK) domain of the lysine-sensitive
aspartokinase isoenzyme AKII of Bacillus subtilis 168, and
the lysine plus threonine-sensitive...; Region:
AAK_AKii-LysC-BS; cd04261"
/db_xref="CDD:58627"
misc_feature order(145636..145638,145642..145650,146137..146142,
146149..146154)
/locus_tag="Gdia_0132"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58627"
misc_feature order(145636..145638,145756..145758,145837..145839)
/locus_tag="Gdia_0132"
/note="putative catalytic residues [active]"
/db_xref="CDD:58627"
misc_feature order(145738..145740,145756..145758,146077..146079,
146161..146163)
/locus_tag="Gdia_0132"
/note="putative Mg ion binding site [ion binding]; other
site"
/db_xref="CDD:58627"
misc_feature order(145738..145743,145756..145758,145837..145839)
/locus_tag="Gdia_0132"
/note="putative aspartate binding site [chemical binding];
other site"
/db_xref="CDD:58627"
misc_feature 146422..146640
/locus_tag="Gdia_0132"
/note="ACT domains of the lysine-sensitive aspartokinase
isoenzyme AKII of Bacillus subtilis (BS) strain 168 and
related proteins; Region: ACT_AKii-LysC-BS-like_1;
cd04913"
/db_xref="CDD:153185"
misc_feature 146533..146538
/locus_tag="Gdia_0132"
/note="putative allosteric regulatory site; other site"
/db_xref="CDD:153185"
misc_feature 146662..146847
/locus_tag="Gdia_0132"
/note="ACT domains of the lysine-sensitive, aspartokinase
(AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168
and related domains; Region: ACT_AKii-LysC-BS-like_2;
cd04936"
/db_xref="CDD:153208"
gene 146879..147937
/locus_tag="Gdia_0133"
/db_xref="GeneID:6973525"
CDS 146879..147937
/locus_tag="Gdia_0133"
/note="PFAM: 2-nitropropane dioxygenase NPD;
KEGG: gdi:GDI1910 putative 2-nitropropane dioxygenase"
/codon_start=1
/transl_table=11
/product="2-nitropropane dioxygenase"
/protein_id="YP_002274548.1"
/db_xref="GI:209542319"
/db_xref="InterPro:IPR004136"
/db_xref="GeneID:6973525"
/translation="MPLSDDAMFRTAARARLDRLWSAGTAFLGSEVAILGGAMSWVSE
RHLVSAISNAGGFGVLACGAMEPDRLAEEIAATQALTSRPFGVNLITMHPRLDDLIQV
CLSAGVTHVVLAGGIPPGPAIRAIKDGGARVVAFAPALVLAKRLVRMGVDALVIEGAE
AGGHVGPVSLTVLAQEVLPHIRSVPVFVAGGLGRGEAILSYLEQGAAGAQLGTRFAAS
AESIAHERFKAAFVRANARDAVTSVQLDERFPVIPVRGLSNEGGRAFLRHQAETIRRY
LDGELTREAAQLDIEHFWAGSLRRAVIEGDVEQGSVMAGQSVGMISSVQPVAAIIAEL
VEQAVDALVRRDMPAGDA"
misc_feature 146951..147910
/locus_tag="Gdia_0133"
/note="putative enoyl-[acyl-carrier-protein] reductase II;
Region: enACPred_II; TIGR03151"
/db_xref="CDD:132195"
misc_feature 146969..147655
/locus_tag="Gdia_0133"
/note="2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes oxidative
denitrification of nitroalkanes to their corresponding
carbonyl compounds and nitrites. NDP is a member of the
NAD(P)H-dependent flavin oxidoreductase...; Region:
NPD_like; cd04730"
/db_xref="CDD:73392"
misc_feature order(146990..146995,147146..147148,147218..147220,
147284..147286,147347..147349,147359..147364,
147443..147451,147506..147517)
/locus_tag="Gdia_0133"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73392"
misc_feature 147365..147370
/locus_tag="Gdia_0133"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73392"
misc_feature 147368..147370
/locus_tag="Gdia_0133"
/note="putative catalytic residue [active]"
/db_xref="CDD:73392"
gene 147934..149148
/locus_tag="Gdia_0134"
/db_xref="GeneID:6973526"
CDS 147934..149148
/locus_tag="Gdia_0134"
/note="KEGG: gdi:GDI1911 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274549.1"
/db_xref="GI:209542320"
/db_xref="GeneID:6973526"
/translation="MNDTSARNPAADPRGAGAPNGVGPTLRARREQLGWALPDVATWL
RIRLSYLEAMEDGRVKDLPGNVYTVGFLRTYAQALGLDAESLVARFKAEARDNIDYKP
ELSFPAPVPGSAVPAGVMALLGGVVIIAAYVGWYRMTGVQSVPPQQVPSVYSAIPGMT
RQAPTSPQVASVLPSGRPIGPPQPLSNAERSAITDGDVPAPAPLAAPTPAVPPQGTTP
QGAVTQGTVTQGTLAQGNGTPGVGDAAVPPPAGPSQSAMQPVPQPAPVAAAPPTAPAG
QMMLTASAQTWVQVRVAGGPVIYDHILQPGESWSVPPDRTNLLLTVGNAGGLVLSADG
VTTQPLGRNGAVVRNLSLTPDAIRSGSIVTAASTPAPHAARPHGSGAGAAMPASAPAV
PQATPPSPTIAH"
misc_feature 148009..148191
/locus_tag="Gdia_0134"
/note="Helix-turn-helix domain; Region: HTH_25; pfam13413"
/db_xref="CDD:205591"
misc_feature 148765..148998
/locus_tag="Gdia_0134"
/note="Domain of unknown function (DUF4115); Region:
DUF4115; pfam13464"
/db_xref="CDD:205642"
gene 149294..150442
/gene="ispG"
/locus_tag="Gdia_0135"
/db_xref="GeneID:6973527"
CDS 149294..150442
/gene="ispG"
/locus_tag="Gdia_0135"
/note="catalyzes the conversion of 2C-methyl-D-erythritol
2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl
diphosphate; involved in isoprenoid synthesis"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase"
/protein_id="YP_002274550.1"
/db_xref="GI:209542321"
/db_xref="InterPro:IPR004588"
/db_xref="GeneID:6973527"
/translation="MSSYRPYQSIERRKSRQIHVGKVPVGGDAPISVQTMTNTLTTDA
EATIAQIRRAELAGVDIVRVSCPDEESTAALAEIVREVNVPIVADIHFHYKRAIEAAQ
AGAACLRINPGNIGSAERVREVVKAAREHGCSIRIGVNAGSLEKHLLEKYGEPNPDAL
VESALEHAKILQDHDFHEFKISVKASDVFLAVAAYQQLAEVCDHPLHIGITEAGSKRA
GTVKSSIGLGNLLWAGVGDTMRVSLSADPEEEVLVGWDILKSLGLRHRGVKIISCPSC
ARQGFNVIQTVQTLEERLAHIQTPLTLSIIGCVVNGPGEALMTDIGVTGGGSGRHMVY
AAGRQDHTVPADSMIEHIVELVEKKAEILRAEEAAAKAEAEAALAPAQ"
misc_feature 149303..150361
/gene="ispG"
/locus_tag="Gdia_0135"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Reviewed; Region: ispG; PRK00366"
/db_xref="CDD:178989"
misc_feature 149309..>150070
/gene="ispG"
/locus_tag="Gdia_0135"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
misc_feature <149927..150280
/gene="ispG"
/locus_tag="Gdia_0135"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
gene 150523..151770
/gene="hisS"
/locus_tag="Gdia_0136"
/db_xref="GeneID:6973528"
CDS 150523..151770
/gene="hisS"
/locus_tag="Gdia_0136"
/EC_number="6.1.1.21"
/note="catalyzes a two-step reaction, first charging a
histidine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA
synthetase; forms homodimers; some organisms have a
paralogous gene, hisZ, that is similar to hisS and
produces a protein that performs the first step in
histidine biosynthesis along with HisG"
/codon_start=1
/transl_table=11
/product="histidyl-tRNA synthetase"
/protein_id="YP_002274551.1"
/db_xref="GI:209542322"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR004154"
/db_xref="InterPro:IPR006195"
/db_xref="InterPro:IPR015807"
/db_xref="GeneID:6973528"
/translation="MSSLQPVRGTHDLIGETQLRHAHVVETARRIAGLYGFDEWATPI
FEDTRVFARSLGDTSDVVSKEMYSFEDRGGESLTLRPEGTAGVCRALVTNGLTQSLPQ
KVFYAGPMFRYERPQKGRYRQFHQIGAELIGAAEPLADAEAIAMGRDVLKALGIADET
ILDLNTLGDTESRAAWRTALIGYFTECRDQLSDDSRARLERNPLRILDSKAPQDRALV
ADAPRIGAFLTPEAVAFWDGLRSALDLMGVPFRENPGIVRGLDYYGHTAFEFVTERLG
AQGTVLAGGRYDGLVAEMGGPRTPAIGWAGGIERLSMLLDATPAAPRPVAVVPMGEGA
MGAAILLLQALRAGGVRAEIAYRGNTKKRLERANRIGATHAVLIGEDEVARGVAQVKA
LDDGSQAELALDAVTPYLAGLAG"
misc_feature 150523..151761
/gene="hisS"
/locus_tag="Gdia_0136"
/note="histidyl-tRNA synthetase; Reviewed; Region: hisS;
PRK00037"
/db_xref="CDD:178812"
misc_feature 150580..151470
/gene="hisS"
/locus_tag="Gdia_0136"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent...; Region:
HisRS-like_core; cd00773"
/db_xref="CDD:73226"
misc_feature order(150586..150588,150622..150624,150637..150657,
150727..150732,150766..150768,150772..150774,
150787..150792,150799..150804,150886..150891,
150910..150912,150934..150936,150946..150948,
150955..150957,151375..151377,151429..151434)
/gene="hisS"
/locus_tag="Gdia_0136"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73226"
misc_feature 150631..150657
/gene="hisS"
/locus_tag="Gdia_0136"
/note="motif 1; other site"
/db_xref="CDD:73226"
misc_feature order(150766..150768,150772..150774,150856..150858,
150862..150864,150883..150885,150892..150894,
150898..150900,150910..150912,151294..151296,
151300..151302,151306..151311,151360..151362,
151375..151377,151432..151434,151441..151443,
151450..151452)
/gene="hisS"
/locus_tag="Gdia_0136"
/note="active site"
/db_xref="CDD:73226"
misc_feature 150853..150867
/gene="hisS"
/locus_tag="Gdia_0136"
/note="motif 2; other site"
/db_xref="CDD:73226"
misc_feature order(151429..151443,151450..151452)
/gene="hisS"
/locus_tag="Gdia_0136"
/note="motif 3; other site"
/db_xref="CDD:73226"
misc_feature 151510..151755
/gene="hisS"
/locus_tag="Gdia_0136"
/note="HisRS Histidyl-anticodon binding domain. HisRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
HisRS_anticodon; cd00859"
/db_xref="CDD:29799"
misc_feature order(151510..151515,151615..151617,151633..151635,
151657..151659,151687..151689,151693..151695)
/gene="hisS"
/locus_tag="Gdia_0136"
/note="anticodon binding site; other site"
/db_xref="CDD:29799"
gene 151775..152833
/gene="prfA"
/locus_tag="Gdia_0137"
/db_xref="GeneID:6973529"
CDS 151775..152833
/gene="prfA"
/locus_tag="Gdia_0137"
/note="recognizes the termination signals UAG and UAA
during protein translation a specificity which is
dependent on amino acid residues residing in loops of the
L-shaped tRNA-like molecule of RF1; this protein is
similar to release factor 2"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 1"
/protein_id="YP_002274552.1"
/db_xref="GI:209542323"
/db_xref="InterPro:IPR000352"
/db_xref="InterPro:IPR004373"
/db_xref="InterPro:IPR005139"
/db_xref="GeneID:6973529"
/translation="MGLDDRLDRIVARSEELQAALAEGLVGEAFAKASREYAELEPIV
DRIGELRLAEQEERQSQALLADPEMRELAEAELEDLRARIPVLRQDIRIAMLPRDEAD
ERSAILEIRPAAGGDEAALFAAELFDAYRRYAALRGWRFEIMEFDESELGGLREGIAN
ITGRGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVLPEAGDVDVQINDGDLRI
DVYRASGAGGQHVNKTESAVRITHLPTGLVVAMQEEKSQHKNRAKAMKILMARLYERE
RAAAHATRAADRKSQVGTGDRSERIRTYNFPQGRVTDHRINLTAYKIDRVMMGEFDEF
VDALTQDEQASLLAAEGL"
misc_feature 151775..152827
/gene="prfA"
/locus_tag="Gdia_0137"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:179074"
misc_feature <152024..152293
/gene="prfA"
/locus_tag="Gdia_0137"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature 152378..152719
/gene="prfA"
/locus_tag="Gdia_0137"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene complement(152847..153311)
/locus_tag="Gdia_0138"
/db_xref="GeneID:6973530"
CDS complement(152847..153311)
/locus_tag="Gdia_0138"
/note="KEGG: gdi:GDI1916 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274553.1"
/db_xref="GI:209542324"
/db_xref="GeneID:6973530"
/translation="MAYQVRSWGILAILVACATVAAPVSRARAGSFIVVDGRADAEIS
ETSRFYIDDQLMATIRLDATVPQRAVRIETPEGRLNHTYVLCGEITVRMPDGRVETHE
VNGEGVLHHPDGHTLNALGTRNFTEFYLADPEDPTVVEHHPGRSSLCTVPTS"
sig_peptide complement(153222..153311)
/locus_tag="Gdia_0138"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.989) with cleavage site probability 0.598 at
residue 30"
gene 153342..154223
/locus_tag="Gdia_0139"
/db_xref="GeneID:6973531"
CDS 153342..154223
/locus_tag="Gdia_0139"
/note="TIGRFAM: modification methylase, HemK family;
protein-(glutamine-N5) methyltransferase, release
factor-specific;
PFAM: methyltransferase small;
KEGG: gdi:GDI1917 putative HemK homolog protein"
/codon_start=1
/transl_table=11
/product="protein-(glutamine-N5) methyltransferase"
/protein_id="YP_002274554.1"
/db_xref="GI:209542325"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR004556"
/db_xref="InterPro:IPR007848"
/db_xref="InterPro:IPR017759"
/db_xref="GeneID:6973531"
/translation="MKRFDAAPPHDPADIASLLAWAAGRLAAAGLDHPRREARLLMAH
VLRTDLAGLLARSAMDAAEHRSFVALVARRAAHEPMAYITGRAGFWSLDLETAPATLI
PRADSETLVEALLAQRPDRGAVRTILDLGTGTGCLLLAALSEYPDAWGLGVDIDPDAA
HLAARNARRTGLRDRCAMLAADWSTAIAGRFDVVFSNPPYIPRADLAGLMPDVRDHEP
ARALDGGTDGLDAYRLLTGALPSLLAHGGIAIFEIGIGQERSMPDLARQAGLDIVGIR
TDLGGIPRAVLMQQCRV"
misc_feature 153441..154208
/locus_tag="Gdia_0139"
/note="N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional; Region: PRK09328"
/db_xref="CDD:181780"
misc_feature 153771..>153959
/locus_tag="Gdia_0139"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene 154498..154932
/locus_tag="Gdia_0140"
/db_xref="GeneID:6973532"
CDS 154498..154932
/locus_tag="Gdia_0140"
/note="KEGG: gox:GOX0029 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274555.1"
/db_xref="GI:209542326"
/db_xref="GeneID:6973532"
/translation="MNMKRMRGRHHRSGGSNGGSIRQQNGQIPLNRNHVFDSNGPDLR
IRGTAQQLFEKYLQLGRDASGSGDRVMAEAYFQHAEHYFRILNAMTQAAQQNQQDRQE
RQPRQRPTAVADTNDGEPGDDAPGEEPAEKGKPDVELAPAEA"
misc_feature 154582..154764
/locus_tag="Gdia_0140"
/note="Domain of unknown function (DUF4167); Region:
DUF4167; pfam13763"
/db_xref="CDD:205936"
gene complement(154977..156242)
/locus_tag="Gdia_0141"
/db_xref="GeneID:6973533"
CDS complement(154977..156242)
/locus_tag="Gdia_0141"
/note="catalyzes the formation of
S-adenosyl-4-methylthionine-2-oxobutanoate and
7,8-diaminononanoate from S-adenosyl-L-methionine and
8-amino-7-oxononanoate"
/codon_start=1
/transl_table=11
/product="adenosylmethionine-8-amino-7-oxononanoate
aminotransferase"
/protein_id="YP_002274556.1"
/db_xref="GI:209542327"
/db_xref="InterPro:IPR005814"
/db_xref="InterPro:IPR005815"
/db_xref="GeneID:6973533"
/translation="MTGPDWFDAGLPHVWLPYTQMHTASPPLPATATDGCRIRLSDGR
ELIDGIASWWTACHGYNHPHIRQAATDQLARMPHVMFGGLVHEPALRLARRLTDLLPG
DLERVFFSDSGSVAVEVAMKMAVQYWLNRGQSGRTRLVAFRGGYHGDTLATMAVCDPE
EGMHSLFAGVLPQHVITDLPCDAASCAALDHLMETEGQHVAAILVEPLVQGAGGMLFH
DPATLRALREIADRHGVLLILDEIFTGFGRTGSLFACQQAGIVPDIITLSKALSGGTV
PLAATVARRHVFQAFLSDDPTHALMHGPTFMANPLACACANASLDLFEREPRLEQVAA
IGAQMRDELEACRHLPAVRDVRTMGAIGVVELERIRDMNRLKARLVDQGVWVRPFRTI
VYLTPAFTIAPKELAHLTQAIRTVLSDPP"
misc_feature complement(154992..156233)
/locus_tag="Gdia_0141"
/note="adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional; Region: PRK05964"
/db_xref="CDD:180329"
misc_feature complement(154992..156227)
/locus_tag="Gdia_0141"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature complement(order(155436..155438,155514..155519,
155523..155525,155625..155627,155796..155798,
155802..155807,155901..155909))
/locus_tag="Gdia_0141"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature complement(order(155436..155438,155514..155516,
155523..155525,155625..155627,155802..155807,
155901..155906))
/locus_tag="Gdia_0141"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature complement(155436..155438)
/locus_tag="Gdia_0141"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 156284..157507
/locus_tag="Gdia_0142"
/db_xref="GeneID:6973534"
CDS 156284..157507
/locus_tag="Gdia_0142"
/EC_number="2.3.1.47"
/note="KEGG: gdi:GDI1920 putative 8-amino-7-oxononanoate
synthase;
TIGRFAM: 8-amino-7-oxononanoate synthase;
PFAM: aromatic amino acid beta-eliminating lyase/threonine
aldolase; aminotransferase class I and II;
aminotransferase class-III"
/codon_start=1
/transl_table=11
/product="8-amino-7-oxononanoate synthase"
/protein_id="YP_002274557.1"
/db_xref="GI:209542328"
/db_xref="InterPro:IPR001597"
/db_xref="InterPro:IPR001917"
/db_xref="InterPro:IPR004723"
/db_xref="InterPro:IPR004839"
/db_xref="InterPro:IPR005814"
/db_xref="GeneID:6973534"
/translation="MRSGRKLRFMTRFDPFFQTALDDLDRRHLKRVLSPVDRDGPVIV
RRDGASLLDFSSNDYLGLSHHPALRARAIDWTERFGIGSGASRLVTGTSEQYRQVEAR
LARFKGTEAALLLASGWQANAAVLPALLRISAAQTGEPALVFTDRLNHASLHHGCQAA
GVRQIRFAHNDLGHLEHLLAQRQAQRGLRFIVTESVFSMDGDRADVAGLRTLADRYGA
FLYLDEAHATGVLGPQGRGLSAEAGGVDLAMGTFSKALGGFGAYVAGSRAVCDWLVST
CSGFIYTTALPPGVLGAIDAALDLVPTLDAERAHLAGLADRMRAGAGALGWSTGPSST
QIVPVIVGAADRALTLARALAARGMLGTAIRPPTVPAGSARIRVALSAAHDETMVDRL
LSALEDAAREHGIAP"
misc_feature 156317..157480
/locus_tag="Gdia_0142"
/note="7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism]; Region: BioF; COG0156"
/db_xref="CDD:30505"
misc_feature 156332..157483
/locus_tag="Gdia_0142"
/note="8-amino-7-oxononanoate synthase; Reviewed; Region:
PRK05958"
/db_xref="CDD:180327"
misc_feature order(156635..156640,156647..156649,156863..156865,
156950..156952,156959..156961,157034..157036,
157043..157045)
/locus_tag="Gdia_0142"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 157043..157045
/locus_tag="Gdia_0142"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 157497..158165
/locus_tag="Gdia_0143"
/db_xref="GeneID:6973535"
CDS 157497..158165
/locus_tag="Gdia_0143"
/note="KEGG: gdi:GDI1921 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274558.1"
/db_xref="GI:209542329"
/db_xref="GeneID:6973535"
/translation="MPPEPAFRPGLLFVHGWGFTPDFWQPVQDRLGRQDAVRLDFGFF
GPACMEARPARPYVAVGHSLGALWLLLHRPAACLGMVLINGFARFGAAADYRQGVPAR
VIDRMVQGLDHNADGVVATFRDRAGIGTPPPGAADPGRLARALAILRDADARPLLASP
DALPPVAVLAGRVDPIVSPAMTDACFHDRLAVDWIADGGHLLPLTHPDACAAAITHMM
DAAP"
misc_feature 157527..158135
/locus_tag="Gdia_0143"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene 158162..159586
/locus_tag="Gdia_0144"
/db_xref="GeneID:6973536"
CDS 158162..159586
/locus_tag="Gdia_0144"
/note="TIGRFAM: dethiobiotin synthase;
PFAM: Methyltransferase type 11; Methyltransferase type
12;
KEGG: gdi:GDI1922 putative biotin synthesis protein"
/codon_start=1
/transl_table=11
/product="dethiobiotin synthase"
/protein_id="YP_002274559.1"
/db_xref="GI:209542330"
/db_xref="InterPro:IPR004472"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:6973536"
/translation="MNPRKHQIAARFGGADSYDAAARIQASVAARLADRIRAACDAAG
GLAPARILELGCGTGFLSAHLRRLFPDAILTVTDLAPEMVERARARLTPLGGDVRYAV
VDAEDPASVGTGFDLICSSLSMQWFTDPAATLDRLAARLAPGGMMALSTLCAGSFAEW
RAVHRAAGLDCPVPSYPGLEQLQADWPGAGVGSWRHETLIDHPASALDFVRELRQIGA
SLPRDGARPAGPGTMRRLLRDLDNRGGVTATYEIGYGLFRTPSRRGVFVTGTDTEVGK
TLAAACLVQAWNASYWKPLQTGIAEDTADSVTIAALCGVDPARIARPAVVLPAPLSPF
DAAEQDGITLDAARIVLPPARDARPVVVEGAGGVMVPITRDCMMIDLMVRFALPVVVV
ARSQLGTINHTLLTLQALRSRGLAVAGVILNGQPSREARRAITLFGGARVLAEFPHLD
QVGPEQVANLAGLLPSYDDLWCYP"
misc_feature 158309..>158542
/locus_tag="Gdia_0144"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(158321..158341,158393..158398,158468..158476,
158522..158524)
/locus_tag="Gdia_0144"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
misc_feature 158948..159529
/locus_tag="Gdia_0144"
/note="AAA domain; Region: AAA_26; pfam13500"
/db_xref="CDD:205678"
misc_feature 158951..159538
/locus_tag="Gdia_0144"
/note="dithiobiotin synthetase; Reviewed; Region: bioD;
PRK00090"
/db_xref="CDD:178855"
gene complement(159603..160364)
/locus_tag="Gdia_0145"
/db_xref="GeneID:6973537"
CDS complement(159603..160364)
/locus_tag="Gdia_0145"
/EC_number="3.4.21.88"
/note="Represses a number of genes involved in the
response to DNA damage"
/codon_start=1
/transl_table=11
/product="LexA repressor"
/protein_id="YP_002274560.1"
/db_xref="GI:209542331"
/db_xref="InterPro:IPR006197"
/db_xref="InterPro:IPR006199"
/db_xref="InterPro:IPR006200"
/db_xref="InterPro:IPR011056"
/db_xref="GeneID:6973537"
/translation="MLTRKQHELLLFIDRHLKQTGFSPSFDEMKDALNLRSKSGIHRL
ISALEERDFLRRRHHRARALEVLRLPETMPAATGKPPLAESGPPPVTAPATDESAAAE
SFVPNVIKGDFANRLAGASVATEAGAIHLPFYGRIAAGQPIEALRETGAQIEVPMNLL
GHGEHYALEVAGDSMIEAGILDGDTVIIRRGDVAQNGQIVVALIDDQEVTLKRLRRRG
STIALEPANARYEPRIVPSDRVRIQGQLVGLLRRY"
misc_feature complement(159606..160364)
/locus_tag="Gdia_0145"
/note="LexA repressor; Validated; Region: PRK00215"
/db_xref="CDD:178931"
misc_feature complement(<160239..160361)
/locus_tag="Gdia_0145"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature complement(159633..159869)
/locus_tag="Gdia_0145"
/note="Peptidase S24 LexA-like proteins are involved in
the SOS response leading to the repair of single-stranded
DNA within the bacterial cell. This family includes: the
lambda repressor CI/C2 family and related bacterial
prophage repressor proteins; LexA (EC...; Region:
S24_LexA-like; cd06529"
/db_xref="CDD:119397"
misc_feature complement(order(159729..159731,159843..159845))
/locus_tag="Gdia_0145"
/note="Catalytic site [active]"
/db_xref="CDD:119397"
gene complement(160553..161758)
/locus_tag="Gdia_0146"
/db_xref="GeneID:6973538"
CDS complement(160553..161758)
/locus_tag="Gdia_0146"
/note="TIGRFAM: molybdenum cofactor synthesis domain
protein;
PFAM: molybdopterin binding domain; MoeA domain protein
domain I and II; MoeA domain protein domain IV;
KEGG: gdi:GDI1924 putative molybdopterin biosynthesis
protein MoeA"
/codon_start=1
/transl_table=11
/product="molybdenum cofactor synthesis domain-containing
protein"
/protein_id="YP_002274561.1"
/db_xref="GI:209542332"
/db_xref="InterPro:IPR001453"
/db_xref="InterPro:IPR005110"
/db_xref="InterPro:IPR005111"
/db_xref="GeneID:6973538"
/translation="MLSVSEAQERILAELIPMGPELVPLAEAWGRVAGAGIAARLDNP
PADISAMDGYAVQAAHCRAGTTLPVIGESPAGHPFPGVVTPDGCVRIYTGSVMPNGAD
SVLIQENATESDGRMTASADAQAGRHIRRRGQDFALGQIVVAPGRLLLAREVGLIAAA
NHAWVPVHRKPTVAILATGDEIALPGETIAPGGIANSNAPMLAALVRACGGTPVMLPI
ARDDEAEIARLAQGVESADLLLTVGGASVGRYDLVQRALERIGLSVNFWKIAMRPGKP
LMHGRIGRVPVLGLPGNPVAAMICAIVFAMPAIRVLAGRSDPMVAYDLATLGGDLPAN
DHRADHLRARLDRAADGSLLATAFPRQDSAMLRTLADSQALILRAPHAPAARTGEPCR
IIRLDTLSI"
misc_feature complement(160568..161758)
/locus_tag="Gdia_0146"
/note="Molybdopterin biosynthesis enzyme [Coenzyme
metabolism]; Region: MoeA; COG0303"
/db_xref="CDD:30651"
misc_feature complement(160571..161749)
/locus_tag="Gdia_0146"
/note="MoeA family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (MoCF), an
essential cofactor of a diverse group of redox enzymes.
MoCF biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and...; Region: MoeA;
cd00887"
/db_xref="CDD:58168"
misc_feature complement(order(160583..160585,160667..160669,
160790..160792,161159..161161,161168..161170,
161174..161176,161276..161278,161282..161287,
161294..161296,161300..161311,161354..161356,
161681..161683))
/locus_tag="Gdia_0146"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58168"
misc_feature complement(order(161027..161029,161096..161098,
161216..161218,161222..161227))
/locus_tag="Gdia_0146"
/note="putative functional site; other site"
/db_xref="CDD:58168"
misc_feature complement(order(160862..160864,160871..160873,
160883..160888,161021..161029))
/locus_tag="Gdia_0146"
/note="putative MPT binding site; other site"
/db_xref="CDD:58168"
gene 161917..162084
/gene="rpmG"
/locus_tag="Gdia_0147"
/db_xref="GeneID:6973539"
CDS 161917..162084
/gene="rpmG"
/locus_tag="Gdia_0147"
/note="in Escherichia coli BM108, a mutation that results
in lack of L33 synthesis had no effect on ribosome
synthesis or function; there are paralogous genes in
several bacterial genomes, and a CXXC motif for zinc
binding and an upstream regulation region of the paralog
lacking this motif that are regulated by zinc similar to
other ribosomal proteins like L31; the proteins in this
group lack the CXXC motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="YP_002274562.1"
/db_xref="GI:209542333"
/db_xref="InterPro:IPR001705"
/db_xref="GeneID:6973539"
/translation="MAKSNTIQIKLVSSADTGYFYVTKKNARAQTGKLEMRKYDPVAR
KHVAFREAKIK"
misc_feature 161917..162075
/gene="rpmG"
/locus_tag="Gdia_0147"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00595"
/db_xref="CDD:179075"
gene complement(162178..162507)
/locus_tag="Gdia_0148"
/db_xref="GeneID:6973540"
CDS complement(162178..162507)
/locus_tag="Gdia_0148"
/note="PFAM: Septum formation initiator;
KEGG: gdi:GDI1926 putative septum formation initiator
protein"
/codon_start=1
/transl_table=11
/product="septum formation initiator"
/protein_id="YP_002274563.1"
/db_xref="GI:209542334"
/db_xref="InterPro:IPR007060"
/db_xref="GeneID:6973540"
/translation="MQIGRMIRRAIRMVIPPALFIGLTAYFGWNVMQGDHGLQSYKAQ
LQLLAEARAAQQDAMAEQQVWVRRVRGLKESALDSDTLDERARAMLNLSRPDELVVPY
GAHEHLY"
misc_feature complement(162205..162441)
/locus_tag="Gdia_0148"
/note="Septum formation initiator; Region: DivIC; cl11433"
/db_xref="CDD:209318"
gene complement(162627..163907)
/gene="eno"
/locus_tag="Gdia_0149"
/db_xref="GeneID:6973541"
CDS complement(162627..163907)
/gene="eno"
/locus_tag="Gdia_0149"
/EC_number="4.2.1.11"
/note="enolase; catalyzes the formation of
phosphoenolpyruvate from 2-phospho-D-glycerate in
glycolysis"
/codon_start=1
/transl_table=11
/product="phosphopyruvate hydratase"
/protein_id="YP_002274564.1"
/db_xref="GI:209542335"
/db_xref="InterPro:IPR000941"
/db_xref="GeneID:6973541"
/translation="MSAIVDIVAREILDSRGNPTVEVDVELASGAKGRAAVPSGASTG
AHEAVELRDGDKSRFGGKGVLKAVEHVETEILEALQGAESMDQVAIDEAMIDLDGTPN
KARLGANAILAVSLAVAKASAEELQIPLYRYVGGVYARTLPVPMMNIVNGGQHADNPI
DIQEFMIQPVGAPTLADAVRVGSEIFAQLKKNLSAAGHNTNVGDEGGFAPGLKSADDA
LGFITKAVEAAGYRPGDDVTFALDCAATEFYRDGLYVMEGEGKTLDSAGMVAYLADLA
ARYPIVSIEDGLAEDDWEGWAVLTATLGKTVQLVGDDLFVTNPDRLRRGIKAGVANSL
LVKVNQIGTLSETLEAVETAQRAGYTAVMSHRSGETEDSTIADLAVATNCGQIKTGSL
SRSDRTAKYNQLIRIENELATAARYAGRTILKTA"
misc_feature complement(162636..163907)
/gene="eno"
/locus_tag="Gdia_0149"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:178845"
misc_feature complement(162678..163892)
/gene="eno"
/locus_tag="Gdia_0149"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:48188"
misc_feature complement(order(162681..162683,162690..162695,
162702..162704,162711..162716,162720..162728,
162795..162803,163275..163277,163281..163283,
163302..163307,163344..163349,163356..163361,
163368..163373,163434..163442,163806..163808,
163842..163844,163854..163880,163884..163886))
/gene="eno"
/locus_tag="Gdia_0149"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48188"
misc_feature complement(order(162972..162974,163053..163055,
163182..163184,163782..163784))
/gene="eno"
/locus_tag="Gdia_0149"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48188"
misc_feature complement(order(162744..162746,162807..162815,
162897..162899,163293..163295,163443..163445))
/gene="eno"
/locus_tag="Gdia_0149"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:48188"
gene 164046..164522
/locus_tag="Gdia_0150"
/db_xref="GeneID:6973542"
CDS 164046..164522
/locus_tag="Gdia_0150"
/note="KEGG: gdi:GDI1928 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274565.1"
/db_xref="GI:209542336"
/db_xref="GeneID:6973542"
/translation="MKRLPLLAIIMGIASPFPAIVCATALLFYPSDRPLPGLTMALVA
YLALMLAFSGAVHWGLALDRPAVVTASPTTRTDNRRMLTGGVPLPVGWLAILATFLGH
AGAGLAILLAGFAGLFLAERAAWRRGELPSGYLALRLCMTAVIMTCLAVALLARAI"
sig_peptide 164046..164117
/locus_tag="Gdia_0150"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.496 at
residue 24"
gene complement(164542..165378)
/locus_tag="Gdia_0151"
/db_xref="GeneID:6973543"
CDS complement(164542..165378)
/locus_tag="Gdia_0151"
/note="catalyzes the formation of
2-dehydro-3-deoxy-D-octonate 8-phosphate from
phosphoenolpyruvate and D-arabinose 5-phosphate in LPS
biosynthesis"
/codon_start=1
/transl_table=11
/product="2-dehydro-3-deoxyphosphooctonate aldolase"
/protein_id="YP_002274566.1"
/db_xref="GI:209542337"
/db_xref="InterPro:IPR006218"
/db_xref="InterPro:IPR006269"
/db_xref="GeneID:6973543"
/translation="MTHPKSVSLGSLTVGNDRPFVLIAGPCQIESEAHAMETADALHG
IARETGVGLIYKSSFDKANRTSLGAARGVGMAAGLEILARVRERFGVPVLTDVHAADQ
CAPTAAAVDVLQIPAFLCRQTDLLLAAGETGAAINVKKGQFLAPWDMTNVAAKIASTG
NERIMLCERGTSFGYNTLVNDMRGLPIMAATGYPVVYDATHSVQQPGGLGGSSGGQRE
FAPILARGALAIGVAAVFIETHQDPDSAPSDGPNMIPIRDMKALVQRLAQYDRLTKAG
TP"
misc_feature complement(164560..165351)
/locus_tag="Gdia_0151"
/note="2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional; Region: PRK05198"
/db_xref="CDD:179961"
misc_feature complement(164554..165336)
/locus_tag="Gdia_0151"
/note="DAHP synthetase I family; Region: DAHP_synth_1;
pfam00793"
/db_xref="CDD:189723"
gene complement(165375..167006)
/gene="pyrG"
/locus_tag="Gdia_0152"
/db_xref="GeneID:6973544"
CDS complement(165375..167006)
/gene="pyrG"
/locus_tag="Gdia_0152"
/EC_number="6.3.4.2"
/note="CTP synthase; cytidine triphosphate synthetase;
catalyzes the ATP-dependent amination of UTP to CTP with
either L-glutamine or ammonia as the source of nitrogen;
in Escherichia coli this enzyme forms a homotetramer"
/codon_start=1
/transl_table=11
/product="CTP synthetase"
/protein_id="YP_002274567.1"
/db_xref="GI:209542338"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR004468"
/db_xref="InterPro:IPR012998"
/db_xref="InterPro:IPR017456"
/db_xref="GeneID:6973544"
/translation="MTRFVFITGGVVSSLGKGIASAALAALLQARGYRVRLRKLDPYL
NVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTGVHATRADNATTGQIYSDVIARE
RRGDYLGATVQVIPHITDAIKEAVVAGTEDLDFVLVEIGGTVGDIESLPFLEAIRQLR
NDLGAGQTMFVHLTLLPWIPSAGELKTKPTQHSVKELQNVGIQAQMLLCRSDRPIPDT
ERRKIANFCNVRPEAVIAALDVDTIYACPVSYHAEGMDTEVLRHFGLPHDQEPDLSAW
NRVLDAMRHPEGEVRIAVVGKYTALLDAYKSLIEALQHGGIANRVRVKLDWVEAEIFE
KSETAIEALRDAHAILVPGGFGERGSEGKIQAVRFAREHNIPFLGICFGMQMAVIECA
RNLAGLPDASSTEFGPTEEPLVGLMTEWARGNELLRRREGGEMGGTMRLGAYAAKLAE
GSRVAEIYGKTEIRERHRHRYEVNVHYREVLEKAGLQFSGMSPDDILPEVVEYPNHPW
FVAVQYHPELLSKPFDPHPLFSGFVGAAVKKMRLV"
misc_feature complement(165378..167006)
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="CTP synthetase; Validated; Region: pyrG; PRK05380"
/db_xref="CDD:180047"
sig_peptide complement(166929..167006)
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.956) with cleavage site probability 0.866 at
residue 26"
misc_feature complement(166242..167000)
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="CTP synthetase (CTPs) is a two-domain protein,
which consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent...; Region: CTGs;
cd03113"
/db_xref="CDD:48377"
misc_feature complement(order(166584..166586,166590..166592,
166782..166787,166794..166796,166800..166802,
166878..166886,166890..166892,166950..166961,
166968..166970))
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="Catalytic site [active]"
/db_xref="CDD:48377"
misc_feature complement(order(166341..166343,166443..166451,
166581..166583,166890..166892,166953..166967))
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="active site"
/db_xref="CDD:48377"
misc_feature complement(order(166341..166343,166443..166451,
166563..166565,166581..166586,166878..166892))
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="UTP binding site [chemical binding]; other site"
/db_xref="CDD:48377"
misc_feature complement(165408..166139)
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cytidine Triphosphate Synthetase; Region:
GATase1_CTP_Synthase; cd01746"
/db_xref="CDD:153217"
misc_feature complement(order(165456..165458,165462..165464,
165594..165605,165792..165794,165852..165854,
165861..165866,165939..165953))
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="active site"
/db_xref="CDD:153217"
misc_feature complement(order(165861..165863,165945..165947))
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="putative oxyanion hole; other site"
/db_xref="CDD:153217"
misc_feature complement(order(165456..165458,165462..165464,
165864..165866))
/gene="pyrG"
/locus_tag="Gdia_0152"
/note="catalytic triad [active]"
/db_xref="CDD:153217"
gene complement(167121..167456)
/locus_tag="Gdia_0153"
/db_xref="GeneID:6973545"
CDS complement(167121..167456)
/locus_tag="Gdia_0153"
/note="TIGRFAM: preprotein translocase, SecG subunit;
PFAM: Preprotein translocase SecG subunit;
KEGG: gdi:GDI1931 protein translocase subunit SecG"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecG"
/protein_id="YP_002274568.1"
/db_xref="GI:209542339"
/db_xref="InterPro:IPR004692"
/db_xref="GeneID:6973545"
/translation="MITVLLFLHLFVTLALIGTVLIQRSEGGGLGIGSSQGMGSFMSG
RGTANLLTRTTSVLAGIFMILSLTLAVMNRGASTGSGHDILAQPPAPAAPATLPAAPA
TPAAPAPTH"
gene complement(167508..168251)
/locus_tag="Gdia_0154"
/db_xref="GeneID:6973546"
CDS complement(167508..168251)
/locus_tag="Gdia_0154"
/EC_number="5.3.1.1"
/note="PFAM: triosephosphate isomerase;
KEGG: gdi:GDI1932 putative triosephosphate isomerase"
/codon_start=1
/transl_table=11
/product="Triose-phosphate isomerase"
/protein_id="YP_002274569.1"
/db_xref="GI:209542340"
/db_xref="InterPro:IPR000652"
/db_xref="GeneID:6973546"
/translation="MRQMIVGNWKMNGLGAPSRDLVGEIAEGLATIPSPPQVVVCPPF
TQLAGIGPLLKGSGIALGAQDCHQAASGAHTGDISAAMLADLGVEYVVLGHSERRRDH
GELDETVREKTQTALAAGLTPIVCIGETGDQKASGESRDAIGWQIQGSLPDGFSGVVA
YEPVWAIGSGNPAASQDIADMMGFIRAELVRQFGAAGKTIRILYGGSVNGRDAASILP
IAEVGGALVGSASLQADTFLPIVRAAVDL"
misc_feature complement(167520..168251)
/locus_tag="Gdia_0154"
/note="triosephosphate isomerase; Provisional; Region:
PRK14567"
/db_xref="CDD:173031"
misc_feature complement(167526..168239)
/locus_tag="Gdia_0154"
/note="Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually...; Region: TIM; cd00311"
/db_xref="CDD:73362"
misc_feature complement(order(167565..167570,167574..167576,
167631..167633,167748..167750,167766..167768,
167967..167969,168222..168224,168228..168230))
/locus_tag="Gdia_0154"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73362"
misc_feature complement(order(167958..167963,167994..167999,
168006..168008,168060..168062,168099..168101,
168108..168110,168114..168122,168219..168221,
168228..168230))
/locus_tag="Gdia_0154"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73362"
misc_feature complement(order(167766..167768,167967..167969,
168222..168224))
/locus_tag="Gdia_0154"
/note="catalytic triad [active]"
/db_xref="CDD:73362"
gene 168512..170443
/locus_tag="Gdia_0155"
/db_xref="GeneID:6973547"
CDS 168512..170443
/locus_tag="Gdia_0155"
/note="KEGG: gdi:GDI1933 peptidyl-prolyl cis-trans
isomerase D"
/codon_start=1
/transl_table=11
/product="peptidyl-prolyl cis-trans isomerase D"
/protein_id="YP_002274570.1"
/db_xref="GI:209542341"
/db_xref="GeneID:6973547"
/translation="MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERAD
VVARVGDQTITTDSFLSAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQS
EMILAAGRLGVTVPDDVLRDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIV
RTDLAVRALVEPLQSGARAPEVMVRRAFDFGAQARTIDLVRIALGDQGTPAPDTATLR
RFYDNHPWLFRLPEFRHARIVVLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSV
QIVTAPSQARAQAIAAQWQAGADWAKIQSGAKDSAAVGMDNVRESAIPSPGLAKLVFA
APASVLQGPVQTDTGWVVFRVTQVTPPHDTDFATARQELRDQMAQTQAADLVGPRVQK
LQDAIAGGGLDRIPDNLGAVAIAGTLDEQGRTQAGEPAPVPGSDALRRAIVARIFAQA
KGANPTLVQGPDNAWFAVAVDSVEPGQLRPFDAVPDQGRSAWEDESRRHTANVQATAL
YLAAKAHGGVAAAAGPGQQVLHPAPLGRGQQIEGVPDELARLVFRLGAAGQTVMLDEP
DGFYVATLTAITHPDPATQPMQVDRIRTGLSQAIANDIGLSYAATLQQAVKPKTNMGA
LQSALSSVTGSPAAGESSP"
misc_feature 168512..169021
/locus_tag="Gdia_0155"
/note="SurA N-terminal domain; Region: SurA_N_3; cl07813"
/db_xref="CDD:208773"
misc_feature 169265..169624
/locus_tag="Gdia_0155"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:205326"
gene 170440..172008
/locus_tag="Gdia_0156"
/db_xref="GeneID:6973548"
CDS 170440..172008
/locus_tag="Gdia_0156"
/EC_number="4.1.3.27"
/note="KEGG: gdi:GDI1934 anthranilate synthase component
1;
TIGRFAM: anthranilate synthase component I;
PFAM: Anthranilate synthase component I domain protein;
Chorismate binding-like"
/codon_start=1
/transl_table=11
/product="anthranilate synthase component I"
/protein_id="YP_002274571.1"
/db_xref="GI:209542342"
/db_xref="InterPro:IPR005256"
/db_xref="InterPro:IPR005801"
/db_xref="InterPro:IPR006805"
/db_xref="InterPro:IPR015890"
/db_xref="GeneID:6973548"
/translation="MSIPSASAAPVPAGRDDVLATLRQGQGAVVWSIEAADLLTPVAA
YMRLSRLAGASDTAPPRNAFLLESVEGGVARGRYSVIGLLPDLIWRCHGGAATINTDA
ARDPAAFVPAGVPPLDSLRAVIRASQMTLPSGLPPMVAGLFGYLGYDMVRQMEHLPDM
PADDLDLPEGVMIRPGLFAIFDTVRDELILAAPVRPRSDRTPEAAWQAAQDLLATARR
TLSEPLQLHEITPDYTGPLEAPRSTFTREGFCAMVRRIQDYIAAGDAFQVVPSQRFST
AFTLPPLALYRALRRINPAPFLFNLAFDGFSLVGSSPEILVRLRDGQMTVRPLAGTRP
RGRTDEEDLALERDLLADPKELAEHLMLIDLGRNDIGRACTVGSVQVTEKFVIERFSH
VMHISSNVEGQLRPGLEALDALIAGFPAGTLTGAPKIRAMEIIDEVEPTRRATYAGCI
GYFGANGAMDTCIGLRMAVVKDGQMHVQAGCGVVADSVPDLEYEETRHKARALFRAAE
DAVQFARGQNTAGS"
misc_feature 170512..171993
/locus_tag="Gdia_0156"
/note="anthranilate synthase component I; Provisional;
Region: PRK13573"
/db_xref="CDD:184154"
misc_feature 170548..171009
/locus_tag="Gdia_0156"
/note="Anthranilate synthase component I, N terminal
region; Region: Anth_synt_I_N; pfam04715"
/db_xref="CDD:203074"
misc_feature 171172..171936
/locus_tag="Gdia_0156"
/note="chorismate binding enzyme; Region: Chorismate_bind;
pfam00425"
/db_xref="CDD:201219"
gene 172129..172725
/locus_tag="Gdia_0157"
/db_xref="GeneID:6973549"
CDS 172129..172725
/locus_tag="Gdia_0157"
/note="TIGRFAM: glutamine amidotransferase of anthranilate
synthase;
PFAM: glutamine amidotransferase class-I;
KEGG: gdi:GDI1935 putative mnthranilate synthase component
2"
/codon_start=1
/transl_table=11
/product="glutamine amidotransferase of anthranilate
synthase"
/protein_id="YP_002274572.1"
/db_xref="GI:209542343"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR001317"
/db_xref="InterPro:IPR006220"
/db_xref="InterPro:IPR006221"
/db_xref="InterPro:IPR011702"
/db_xref="InterPro:IPR012998"
/db_xref="GeneID:6973549"
/translation="MILLIDNYDSFTFNLVHYLGDLGEVCDVRRNDALTADQAMDLNP
DAIVLSPGPGTPDQAGICCELICKAAGRVPVFGVCLGHQAIGQVFGGTVVRAPTPMHG
KVSPVTHDGSGVFAGLPDPFLATRYHSLTVDPADLPSDLVPVARTEDGVIMGLRHRTL
PIFGVQFHPESIASEHGHDILANFMAIARGLNTPRKAA"
misc_feature 172132..172683
/locus_tag="Gdia_0157"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Anthranilate synthase; Region:
GATase1_Anthranilate_Synthase; cd01743"
/db_xref="CDD:153214"
misc_feature 172135..172680
/locus_tag="Gdia_0157"
/note="Glutamine amidotransferase class-I; Region: GATase;
pfam00117"
/db_xref="CDD:201015"
misc_feature order(172279..172284,172288..172290,172363..172368,
172375..172377,172507..172518)
/locus_tag="Gdia_0157"
/note="glutamine binding [chemical binding]; other site"
/db_xref="CDD:153214"
misc_feature order(172363..172365,172630..172632,172636..172638)
/locus_tag="Gdia_0157"
/note="catalytic triad [active]"
/db_xref="CDD:153214"
gene 172733..173863
/gene="trpD"
/locus_tag="Gdia_0158"
/db_xref="GeneID:6973550"
CDS 172733..173863
/gene="trpD"
/locus_tag="Gdia_0158"
/EC_number="2.4.2.18"
/note="Catalyzes the conversion of
N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to
anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate"
/codon_start=1
/transl_table=11
/product="anthranilate phosphoribosyltransferase"
/protein_id="YP_002274573.1"
/db_xref="GI:209542344"
/db_xref="InterPro:IPR000312"
/db_xref="InterPro:IPR005940"
/db_xref="InterPro:IPR017459"
/db_xref="GeneID:6973550"
/translation="MDGVPSLSADQAGAFRTILNRLARGETLTETEAEDAFGLIMDGG
VPDTLIAAFLMALRVRGEKRAELLGAVRAVRSRMRAVGPVPPGTIDVCGTGGDGLGTL
NISTAVAFVLAALGVPVAKHGNRALSSRSGATDVLGALGVDLSDDPSVIAARINDGNL
AFMAAPAHHPAMRHAGPVRAALGIRTLFNLIGPLCNPAGVTHQLVGVFDPAWLRPVVE
TLQLLGSERVWAVHGYCEGATGGRGVDELTLAGPTAIVALQNGRIYDLTLRPEDAGLR
PAPITAIAGGGAEENAAALTALLAGAHGAYRDTVLLNAAACLHVAGRGAALDDDGRLR
PASLRALVADAARVLDDGSALAMLNSARRRHMDTPEGITQSL"
misc_feature 172775..173719
/gene="trpD"
/locus_tag="Gdia_0158"
/note="anthranilate phosphoribosyltransferase;
Provisional; Region: trpD; PRK00188"
/db_xref="CDD:178920"
misc_feature 172775..172939
/gene="trpD"
/locus_tag="Gdia_0158"
/note="Glycosyl transferase family, helical bundle domain;
Region: Glycos_trans_3N; pfam02885"
/db_xref="CDD:145834"
misc_feature 172985..173701
/gene="trpD"
/locus_tag="Gdia_0158"
/note="Glycosyl transferase family, a/b domain; Region:
Glycos_transf_3; pfam00591"
/db_xref="CDD:144256"
gene 173860..174723
/locus_tag="Gdia_0159"
/db_xref="GeneID:6973551"
CDS 173860..174723
/locus_tag="Gdia_0159"
/EC_number="4.1.1.48"
/note="PFAM: Indole-3-glycerol phosphate synthase;
KEGG: gdi:GDI1937 putative indole-3-glycerol phosphate
synthase"
/codon_start=1
/transl_table=11
/product="indole-3-glycerol-phosphate synthase"
/protein_id="YP_002274574.1"
/db_xref="GI:209542345"
/db_xref="InterPro:IPR001468"
/db_xref="InterPro:IPR013798"
/db_xref="GeneID:6973551"
/translation="MMNDMPTSQAPIDCGNTPGQDGIPDVLARICARTRVDVAQRATI
TPLKDITARAREVDSPTRGFGQALKQRTADRQIGLIAEIKKASPSAGILRPDYDPAGI
AVQYETAGAACISVLTEGSCFHGCAEDLQRVRKACSLPILRKDFILDPWQVHESRLIG
ADCILLILAALTDTEASELLDIARGLDMDVLVEVHDEGELNRALALDTSLIGINNRNL
KTLKTDLETTIQLTPLVPPDRIVVSESGISTHADIVRLSEIGASGFLVGESLLRHDVP
GDAARVLLGTV"
misc_feature 174049..174708
/locus_tag="Gdia_0159"
/note="Indole-3-glycerol phosphate synthase (IGPS); an
enzyme in the tryptophan biosynthetic pathway, catalyzing
the ring closure reaction of
1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate
(CdRP) to indole-3-glycerol phosphate (IGP), accompanied
by the...; Region: IGPS; cd00331"
/db_xref="CDD:73363"
misc_feature order(174103..174105,174109..174111,174118..174126,
174226..174228,174289..174291,174295..174297,
174358..174360,174436..174438,174499..174501,
174505..174507,174511..174513,174592..174597,
174658..174663)
/locus_tag="Gdia_0159"
/note="active site"
/db_xref="CDD:73363"
misc_feature order(174103..174105,174109..174111,174289..174291,
174436..174438,174499..174501)
/locus_tag="Gdia_0159"
/note="ribulose/triose binding site [chemical binding];
other site"
/db_xref="CDD:73363"
misc_feature order(174109..174111,174595..174597,174658..174663)
/locus_tag="Gdia_0159"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:73363"
misc_feature order(174121..174123,174226..174228,174505..174507,
174511..174513)
/locus_tag="Gdia_0159"
/note="substrate (anthranilate) binding pocket [chemical
binding]; other site"
/db_xref="CDD:73363"
misc_feature order(174226..174228,174289..174291,174295..174297,
174358..174360,174511..174513)
/locus_tag="Gdia_0159"
/note="product (indole) binding pocket [chemical binding];
other site"
/db_xref="CDD:73363"
gene 174726..175241
/locus_tag="Gdia_0160"
/db_xref="GeneID:6973552"
CDS 174726..175241
/locus_tag="Gdia_0160"
/note="TIGRFAM: molybdenum cofactor biosynthesis protein
C;
PFAM: molybdopterin cofactor biosynthesis MoaC region;
KEGG: gdi:GDI1938 molybdenum cofactor biosynthesis protein
C"
/codon_start=1
/transl_table=11
/product="molybdenum cofactor biosynthesis protein C"
/protein_id="YP_002274575.1"
/db_xref="GI:209542346"
/db_xref="InterPro:IPR002820"
/db_xref="GeneID:6973552"
/translation="MATAGGLSHLDANGHAVMVDVSTKPATARQAVARGRVSMREETL
DLILSGTIKKGDVLAVSRIAGIMAAKKTADLIPLCHPLPLSSVRVELTASHDRTGVEI
EACVGTTGQTGVEMEALTAVSVAALTLYDMCKAVDRGMTIEAVYLARKTGGQSGSYER
PEAGAAPTPMA"
misc_feature 174777..175193
/locus_tag="Gdia_0160"
/note="MoaC family, prokaryotic and eukaryotic. Members of
this family are involved in molybdenum cofactor (Moco)
biosynthesis, an essential cofactor of a diverse group of
redox enzymes. MoaC, a small hexameric protein, converts,
together with MoaA, a guanosine...; Region: MoaC_PE;
cd01420"
/db_xref="CDD:29626"
misc_feature order(174777..174788,174891..174968,174975..174995,
175149..175184)
/locus_tag="Gdia_0160"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:29626"
misc_feature order(174885..174893,174939..174953,175134..175142)
/locus_tag="Gdia_0160"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29626"
misc_feature order(174885..174887,174933..174935,174954..174956,
174960..174965,175059..175061,175068..175076,
175083..175085,175116..175118,175125..175127)
/locus_tag="Gdia_0160"
/note="putative active site [active]"
/db_xref="CDD:29626"
gene 175354..176364
/locus_tag="Gdia_0161"
/db_xref="GeneID:6973553"
CDS 175354..176364
/locus_tag="Gdia_0161"
/EC_number="1.2.4.1"
/note="KEGG: gdi:GDI1939 pyruvate dehydrogenase E1
component subunit alpha;
TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1
component, alpha subunit;
PFAM: dehydrogenase E1 component"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase (acetyl-transferring) E1
component subunit alpha"
/protein_id="YP_002274576.1"
/db_xref="GI:209542347"
/db_xref="InterPro:IPR001017"
/db_xref="InterPro:IPR017597"
/db_xref="GeneID:6973553"
/translation="MGETRKSATEAGRNSPSMSKEDLTRAFHDMVLIRRFEERAGQLY
GMGLIGGFCHLYIGQEAVVVGVQMELKQGDKIITSYRDHGQMLAAGMDPRGVMAELTG
REGGYSRGKGGSMHMFSSEKHFYGGHGIVGAQVSLGIGLAFANKYRGTDEVSIAYFGE
GASSQGQVYESFNLAALHKLPCVFVLENNHYGMGTSVERSSASKELWRNGEPWGIPGR
QVDGMDVEAVRDAAREAIEHCRQGKGPYLLEMTTYRYRGHSMSDPAKYRPRSEVDEMR
KNHDPIDRVRKELLAMGVGEAELKTIEDKVKEVVVDAADFAQTSPEPDPAELWTDVLV
EG"
misc_feature 175411..176355
/locus_tag="Gdia_0161"
/note="pyruvate dehydrogenase E1 component, alpha subunit;
Region: PDH_E1_alph_y; TIGR03182"
/db_xref="CDD:188297"
misc_feature 175429..176259
/locus_tag="Gdia_0161"
/note="Thiamine pyrophosphate (TPP) family, E1 of
PDC_ADC_BCADC subfamily, TPP-binding module; composed of
proteins similar to the E1 components of the human
pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain...;
Region: TPP_E1_PDC_ADC_BCADC; cd02000"
/db_xref="CDD:48163"
misc_feature order(175501..175503,175657..175659,175738..175743,
175834..175836,175840..175851,175858..175860,
175870..175872,175882..175884,175927..175938,
175978..175980,175993..175995,176146..176148)
/locus_tag="Gdia_0161"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(175591..175596,175738..175740,175744..175746,
175828..175839,175918..175920,175924..175926,
176125..176127)
/locus_tag="Gdia_0161"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48163"
misc_feature order(175723..175725,175729..175731,175735..175737,
175750..175752,175759..175764,175771..175776,
175780..175785,175792..175794,175849..175854,
175870..175875,175882..175884)
/locus_tag="Gdia_0161"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(176110..176130,176134..176136,176137..176163,
176188..176196)
/locus_tag="Gdia_0161"
/note="phosphorylation loop region [posttranslational
modification]"
/db_xref="CDD:48163"
gene 176368..177714
/locus_tag="Gdia_0162"
/db_xref="GeneID:6973554"
CDS 176368..177714
/locus_tag="Gdia_0162"
/note="catalyzes the oxidative decarboxylation of pyruvate
with concomitant acetylation of a lipoic acid-containing
dihydrolipoamide acetyltransferase within the complex. The
E1 component of the pyruvate dehydrogenase complex
catalyzes the overall conversion of pyruvate to acetyl-CoA
and CO(2). It contains multiple copies of three enzymatic
components: pyruvate dehydrogenase (E1), dihydrolipoamide
acetyltransferase(E2) and lipoamide dehydrogenase"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase subunit beta"
/protein_id="YP_002274577.1"
/db_xref="GI:209542348"
/db_xref="InterPro:IPR000089"
/db_xref="InterPro:IPR003016"
/db_xref="InterPro:IPR005475"
/db_xref="InterPro:IPR005476"
/db_xref="GeneID:6973554"
/translation="MTQILMPALSPTMTEGKLARWLKTTGDHVAAGDVIAEIETDKAT
MEVEAVDEGTLGDILIPEGTENVPVNTPIATLQSEGGAAAPAAAPAAKAPAPQAAAAP
AAPQPVSPVAAPVAAPEKDWGETAEITVREALRDAMAAELRRDQDVFLIGEEVAQYQG
AYKVSQGLLDEFGEKRVIDTPITEQGFTGMAVGAALTGLKPIVEFMTMNFAMQAIDQI
INSAAKTRYMSGGQMSCPIVFRGPNGAAARVGAQHSQCYASWYGHVPGLKVVAPWSAA
DAKGMLRAAIRDPNPVIVLENEILYGQKFPCPVDEDFILPIGRAKVEREGRDVTIVTF
SIMVGTALEAAAILAEQGIEAEVINLRTIRPLDIETIVASVKKTSRLVCVEEGWPFAG
IGAEVSMQVIEHAFDYLDAPPARVAGADVPMPFAANLEKLALPNPTWVVDAVRKLV"
misc_feature 176368..177708
/locus_tag="Gdia_0162"
/note="pyruvate dehydrogenase subunit beta; Provisional;
Region: PRK11892"
/db_xref="CDD:183363"
misc_feature 176371..176595
/locus_tag="Gdia_0162"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(176461..176463,176482..176499,176509..176511)
/locus_tag="Gdia_0162"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 176491..176493
/locus_tag="Gdia_0162"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 176761..177261
/locus_tag="Gdia_0162"
/note="Pyrimidine (PYR) binding domain of the beta
subunits of the E1 components of human pyruvate
dehydrogenase complex (E1- PDHc) and related proteins;
Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
/db_xref="CDD:132919"
misc_feature order(176803..176805,176809..176811,176827..176829,
176893..176895,176902..176904,176908..176925,
176932..176937,176941..176949,177004..177006,
177013..177018,177043..177048,177112..177114,
177121..177123,177166..177171,177232..177237)
/locus_tag="Gdia_0162"
/note="alpha subunit interface [polypeptide binding];
other site"
/db_xref="CDD:132919"
misc_feature order(176824..176826,176911..176913,176917..176919,
176995..176997,177004..177006)
/locus_tag="Gdia_0162"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132919"
misc_feature order(176827..176829,176902..176904,176908..176919,
177001..177006,177010..177012,177025..177027,
177037..177039,177046..177048,177112..177114,
177118..177123,177145..177147,177151..177156,
177160..177162)
/locus_tag="Gdia_0162"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:132919"
misc_feature 177319..177681
/locus_tag="Gdia_0162"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene 177727..179001
/locus_tag="Gdia_0163"
/db_xref="GeneID:6973555"
CDS 177727..179001
/locus_tag="Gdia_0163"
/EC_number="2.3.1.61"
/note="KEGG: gdi:GDI1941 dihydrolipoamid acetyltransferase
component of pyruvate dehydrogenase complex;
TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide
acetyltransferase;
PFAM: biotin/lipoyl attachment domain-containing protein;
catalytic domain of components of various dehydrogenase
complexes; E3 binding domain protein"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase complex dihydrolipoamide
acetyltransferase"
/protein_id="YP_002274578.1"
/db_xref="GI:209542349"
/db_xref="InterPro:IPR000089"
/db_xref="InterPro:IPR001078"
/db_xref="InterPro:IPR003016"
/db_xref="InterPro:IPR004167"
/db_xref="InterPro:IPR006257"
/db_xref="GeneID:6973555"
/translation="MSVNILMPALSPTMTEGKLSRWLKKEGDAIHSGDVIAEIETDKA
TMEVEAVDDGLLGRILVSEGTEGVKVNAPIAIVVAEGESVPDDAAPVAAAPAAAPVAA
APVSEAKAPAIAAAPAVPQGAAPAPAQGTRVFASPLARRIAAQKGIDLSGVKGSGPNG
RIVRRDVESATAAPVAAPVPSPAPSAPAAAIEAPHTAVPNSTIRKVIARRLTEAKSTI
PHFYVAMDVELDALLDLRAKLNAASPAEGPGAFKLSVNDMLIKAVAVTLRRVPKVNAS
YTEDATILYDDVDVSVAVSIADGLITPIVRQADRKSLREISEDAKDLITRARAGKLKP
QEFQGGSFSISNMGMYGVKEFSAIINPPQAAILAIAAAEKRAVVKDDAIRIATVMTVT
LSVDHRVVDGALAAEWVSTFRSVVESPLSLVV"
misc_feature 177733..177957
/locus_tag="Gdia_0163"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature 177736..178998
/locus_tag="Gdia_0163"
/note="pyruvate dehydrogenase complex dihydrolipoamide
acetyltransferase, long form; Region: PDHac_trf_mito;
TIGR01349"
/db_xref="CDD:211642"
misc_feature order(177823..177825,177844..177861,177871..177873)
/locus_tag="Gdia_0163"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 177853..177855
/locus_tag="Gdia_0163"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 178120..178224
/locus_tag="Gdia_0163"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature 178357..178998
/locus_tag="Gdia_0163"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:201074"
gene 179014..180423
/locus_tag="Gdia_0164"
/db_xref="GeneID:6973556"
CDS 179014..180423
/locus_tag="Gdia_0164"
/note="TIGRFAM: dihydrolipoamide dehydrogenase;
PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase; glucose-inhibited division protein A;
pyridine nucleotide-disulphide oxidoreductase dimerisation
region;
KEGG: gdi:GDI1942 putative dihydrolipoyl dehydrogenase"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide dehydrogenase"
/protein_id="YP_002274579.1"
/db_xref="GI:209542350"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000815"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR002218"
/db_xref="InterPro:IPR004099"
/db_xref="InterPro:IPR006258"
/db_xref="InterPro:IPR012999"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:6973556"
/translation="MSKTEFDIVVIGGGPGGYVAAIRAAQLGLSTAVVEANHLGGICL
NWGCIPTKALLRSSEINHLLHNLGEFGFAADNVRFDLDKVVKRSRKVAGQLSAGVAHL
LKKNKVPVFDGFGKLAGTSGGRRKIEVTKDGKPVATLSAANVILATGARARVLPGLEP
DGKLIWSYREAMVPTEMPKRLLVVGSGAIGIEFASFYRNMGAEVTVVEVLDRILPVED
EEISALAHKAFVKQGFTLLTGAKIGPIRKNGDSVSLSVEAGGKTHDITVDRVISAVGI
VGNVENIGLEGTAIQVDRTHIKVDAYCRTGEPGVYAIGDIAGPPWLAHKASHEGVMCV
EAIAGRHVHPIDPRNIPGCTYCRPQVASVGMTEAAAKAAGHTVRVGRFPFIGNGKAIA
MGEPEGLVKTVFDAKTGELLGAHMIGAEVTEMIQGYVIARTSELTDAELKETVFPHPT
ISEAMHEAVLAAYDGALHI"
misc_feature 179023..180420
/locus_tag="Gdia_0164"
/note="dihydrolipoamide dehydrogenase; Reviewed; Region:
PRK06416"
/db_xref="CDD:180558"
misc_feature 179551..179796
/locus_tag="Gdia_0164"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature 180061..180390
/locus_tag="Gdia_0164"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene 180729..181718
/locus_tag="Gdia_0165"
/db_xref="GeneID:6973557"
CDS 180729..181718
/locus_tag="Gdia_0165"
/note="catalyzes the radical-mediated insertion of two
sulfur atoms into an acyl carrier protein (ACP) bound to
an octanoyl group to produce a lipoyl group"
/codon_start=1
/transl_table=11
/product="lipoyl synthase"
/protein_id="YP_002274580.1"
/db_xref="GI:209542351"
/db_xref="InterPro:IPR003698"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:6973557"
/translation="MPTRLLIDHRKGGVSVRHPEKAHRPDNPIARKPDWIRVRAPNHP
VYQETRALMREQNLVTVCEEAACPNIGECWSQRHATMMIMGEICTRACAFCNVTTGMP
NPLDADEPARVGDAVAKLGLRHVVITSVDRDDLPDGGAAHFARVIAAIRAQAPETTIE
ILTPDFLRKRGALEVVVSARPDVFNHNLETVPRLYPGIRPGARYYQSLRLLDDVKRLD
PSIFTKSGLMVGLGEERAEILQVMDDLRVADVDFITMGQYLQPTVKHAAVRDFVTPDE
FADYAAMARAKGFLQVSASPLTRSSYHADSDFAELRAAREARLAASRVGTETP"
misc_feature 180804..181652
/locus_tag="Gdia_0165"
/note="lipoyl synthase; Provisional; Region: PRK05481"
/db_xref="CDD:180115"
misc_feature 180990..181505
/locus_tag="Gdia_0165"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(180990..180992,180996..180998,181002..181004,
181008..181016,181110..181112,181116..181121,
181212..181220,181287..181289,181410..181412,
181497..181502)
/locus_tag="Gdia_0165"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 181718..182212
/locus_tag="Gdia_0166"
/db_xref="GeneID:6973558"
CDS 181718..182212
/locus_tag="Gdia_0166"
/note="PFAM: cyclase/dehydrase;
KEGG: gdi:GDI1944 cyclase/dehydrase protein"
/codon_start=1
/transl_table=11
/product="cyclase/dehydrase"
/protein_id="YP_002274581.1"
/db_xref="GI:209542352"
/db_xref="InterPro:IPR005031"
/db_xref="GeneID:6973558"
/translation="MPTHAERRLIAYSVEQLFDLVADVGKYPHFLPWCVNARVRTRTA
SELVADLTIGFGPFRETFTSRVDLERPSRIRVRYEKGPFRYLNNVWTFTPDERGCQVD
FFVDFEFRSRLLQAAIGVVFNEAVRLMVSAFIRRAREVYGPPVTRTTLAQPAHAQPAG
TGSA"
misc_feature 181727..182137
/locus_tag="Gdia_0166"
/note="Coenzyme Q-binding protein COQ10p and similar
proteins; Region: COQ10p_like; cd07813"
/db_xref="CDD:176855"
misc_feature order(181727..181729,181733..181735,181739..181741,
181766..181774,181778..181783,181826..181828,
181856..181858,181862..181864,181868..181870,
181874..181876,181907..181909,181913..181915,
181919..181921,181937..181939,181943..181945,
181976..181981,181985..181987,181991..181993,
182018..182020,182024..182026,182030..182032,
182036..182038,182069..182083,182087..182095,
182099..182107,182114..182116)
/locus_tag="Gdia_0166"
/note="putative coenzyme Q binding site [chemical
binding]; other site"
/db_xref="CDD:176855"
gene 182266..182592
/locus_tag="Gdia_0167"
/db_xref="GeneID:6973559"
CDS 182266..182592
/locus_tag="Gdia_0167"
/note="KEGG: gdi:GDI1945 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274582.1"
/db_xref="GI:209542353"
/db_xref="GeneID:6973559"
/translation="MKMSLGAAFLAVVVVATAPAFAATHHHKGRHGEHHADHKMKMNQ
KGSNTTEDLNAKSLDAARAGTPTSPAAPMGGTSAMPSPTVPAGTGVTAPPAAPAPSMP
NPSNGY"
sig_peptide 182266..182334
/locus_tag="Gdia_0167"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 1.000 at
residue 23"
gene complement(182708..182911)
/locus_tag="Gdia_0168"
/db_xref="GeneID:6973560"
CDS complement(182708..182911)
/locus_tag="Gdia_0168"
/note="PFAM: TOBE domain protein;
KEGG: gdi:GDI1946 putative molybdenum transport protein
ModE"
/codon_start=1
/transl_table=11
/product="TOBE domain-containing protein"
/protein_id="YP_002274583.1"
/db_xref="GI:209542354"
/db_xref="InterPro:IPR004606"
/db_xref="InterPro:IPR005116"
/db_xref="GeneID:6973560"
/translation="MKISARNQISGKITEIIKGATTSHVGIDIGGKVITASITNEAVA
DLKLKVGEHATAIIKASDVMVGV"
misc_feature complement(182711..182911)
/locus_tag="Gdia_0168"
/note="molybdenum-pterin binding domain; Region: Mop;
TIGR00638"
/db_xref="CDD:161972"
mobile_element 183008..185254
/note="interrupted by IS element"
/mobile_element_type="insertion sequence:Gdi2"
gene 183050..185235
/locus_tag="Gdia_0169"
/pseudo
/db_xref="GeneID:6973561"
mobile_element complement(183804..185159)
/note="family IS256"
/mobile_element_type="insertion sequence:Gdi8"
gene complement(183859..185055)
/locus_tag="Gdia_0170"
/db_xref="GeneID:6973562"
CDS complement(183859..185055)
/locus_tag="Gdia_0170"
/note="PFAM: transposase mutator type;
KEGG: gdi:GDI2780 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase IS256"
/protein_id="YP_002274584.1"
/db_xref="GI:209542355"
/db_xref="InterPro:IPR001207"
/db_xref="GeneID:6973562"
/translation="MTDEKMALLELVEQASDGDFVREMLAFAADRMMEMEVEARTGAP
LGARSASRSTQRNGYRARNWDTRAGTVELAIPKLRKGSYFPTFLEPRKTAEKALLAVI
QEAYVQGISTRSVDDLVRAMGAGGISKSQVSRLVGEIDERVNSFLSRPIEGEWPYLWI
DATYLKLRQGGRIVSIAVIIAVGVNTDGRREVLGVATGPSEAEAFWTDFLRSLADRGL
RGVKLVVADAHAGLRAAAGRVFNATLQRCRVHWLRNALAHAHAKQRPAISALLRTIFT
QETAEDASRQWRHVTDKLREGFPKLAEFMKRTEVDVLAYMGFPREHWTQISSTNPIER
VNREIKRRCDVIGIFPNDAAIIRLVGALMLEQNDEWAVCRRYMTLEGLAAISHNPTIS
LPAVAA"
misc_feature complement(183940..185037)
/locus_tag="Gdia_0170"
/note="Transposase, Mutator family; Region:
Transposase_mut; pfam00872"
/db_xref="CDD:109910"
mobile_element complement(185259..186708)
/note="family IS1182"
/mobile_element_type="insertion sequence:Gdi13"
gene complement(185312..186655)
/locus_tag="Gdia_0171"
/db_xref="GeneID:6973563"
CDS complement(185312..186655)
/locus_tag="Gdia_0171"
/note="PFAM: transposase IS4 family protein;
KEGG: gdi:GDI3864 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase IS1182 family protein"
/protein_id="YP_002274585.1"
/db_xref="GI:209542356"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:6973563"
/translation="MSSFIPFDRSQPYLLPPDLKSWLPSDDVAHFIVAAVERVPLRAF
SVPVRTGGKAQYHPRLMLALLIYAYANGVFSSRRIERATYRDIGMRFVAANLHPDHDT
IATFRRGNRTAIEAAFMHVLLLARETGLVRLGTVSIDGTKIDANASKYRSIRYDRAKE
LREKLATDISTLMERAEAADTTDVDHQALPEELARREALKAKLDEACARLEAEAREQA
KTARPEYERKKAAFDAKRGRRGRPPKEPDDEPPPDRQINLTDPDSKLMRRSDAHEYRQ
AYNAQAVVCAEGSQLILENGVVATTADAPSFAATILGMEERIGLPRTVLADTGFASGK
AVETLQASGVDPLVAIGRPVNRRPYDFRPEPPPREPRRITEPWRLEMKARLQQNPAKA
LYALRKQTVEPVFGIIKSAMGFTRFHLRGLPNVATEWTLVALAYNCRRITRLTAA"
misc_feature complement(186170..186646)
/locus_tag="Gdia_0171"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3666"
/db_xref="CDD:33464"
misc_feature complement(185345..185881)
/locus_tag="Gdia_0171"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
misc_feature complement(185333..>185518)
/locus_tag="Gdia_0171"
/note="Transposase DDE domain; Region: DDE_Tnp_1_6;
pfam13751"
/db_xref="CDD:205925"
mobile_element 186713..187642
/mobile_element_type="insertion sequence:Gdi1"
gene complement(186733..187569)
/locus_tag="Gdia_0172"
/db_xref="GeneID:6973564"
CDS complement(186733..187569)
/locus_tag="Gdia_0172"
/note="PFAM: transposase IS4 family protein;
KEGG: gdi:GDI3822 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase IS5 family protein"
/protein_id="YP_002274586.1"
/db_xref="GI:209542357"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:6973564"
/translation="MVTWTGIARREHSREGLRYPSDMTDGEWALIMPFVPPAKRGGRP
RTTDMREVVNAMLYIASAGCAWRLLPKCFPPVSTVRRYFYAWRGAGVFEVMNTVLVMS
LREIEGREASPSAGVIDSQSVKTTESGGLSGYDAGKKVKGRKRHIVTDTCGFLIFLLV
HAADIQDRDGAVDVLAAIRRRFPWLRHIFADGGYAGDKLRSALASMGKWTLEIIRRSD
TAKGFQILPRRWVVERTFAWLGRCRRLAKDWEQSIASSTAWTLIASIRMLTRRTARHC
HG"
misc_feature complement(187282..187503)
/locus_tag="Gdia_0172"
/note="Putative transposase of IS4/5 family (DUF4096);
Region: DUF4096; pfam13340"
/db_xref="CDD:205520"
misc_feature complement(186766..187242)
/locus_tag="Gdia_0172"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
misc_feature complement(186760..187008)
/locus_tag="Gdia_0172"
/note="Transposase DDE domain; Region: DDE_Tnp_1_2;
pfam13586"
/db_xref="CDD:205764"
gene complement(187681..189318)
/locus_tag="Gdia_0173"
/db_xref="GeneID:6973565"
CDS complement(187681..189318)
/locus_tag="Gdia_0173"
/note="PFAM: chemotaxis sensory transducer;
SMART: histidine kinase HAMP region domain protein;
KEGG: gdi:GDI1947 putative chemoreceptor McpA
(methyl-accepting chemotaxis protein)"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_002274587.1"
/db_xref="GI:209542358"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:6973565"
/translation="MLEPDTLADRLQFVKLDSKTRQNLRGIKSIIMRALPGALDKFYD
QVRSFPKTRHFFSGQAHIDAAKSRQIAHWGTISDARFDQSYMEAATRIGEVHARVGLE
PRWHIGGYALLIESMLGALLEARWPKAGLAARIGLGGGADVRQVAEEAGALVKAALID
MDYAISAYLEASETARQKVEADVLARERGTVVDRVGAGMAALATGDLTFRMSSDVPEE
YRKLQEDFNGAIESLQTTMQAIDTNAQAVRTGSDEIRQASDDLARRTAQQAASLEQAA
ATLDGITTTVRRSAEDAGQARHMATVAKTDAERSGDVVRQTVTTMSGIEASSRQIGSI
IGIIDEIAFLTNLLAVNAGVEAARAGDAGRGFAVVATEVRALAQRSAEAAKEIKELIS
ASGRQVTTGVKLVGETGKALDRIVEQVSRLNVLVTDIAISSANQATGLNEVNDAVNQM
DQVTQQNAAMVEQSAAASRSMANEAEDLARLVEQFQTGHSQAFQTASRTGPAPAASLW
QDEESSAYMPAASSRSAAGGNVLSFPAAKGADGWDEF"
misc_feature complement(188821..189300)
/locus_tag="Gdia_0173"
/note="Globin domain present in Globin-Coupled-Sensors
(GCS). These domains detect changes in intracellular
concentrations of oxygen, carbon monoxyde, or nitrous
oxide, which result in aerotaxis and/or gene regulation.
One subgroup, the HemATs, are aerotactic...; Region:
sensor_globin; cd01068"
/db_xref="CDD:29981"
misc_feature complement(order(188989..188991,189001..189003,
189016..189018,189022..189024,189031..189033,
189043..189045,189103..189105,189112..189117,
189124..189129,189139..189141,189151..189156,
189163..189165,189190..189195))
/locus_tag="Gdia_0173"
/note="heme-binding site [chemical binding]; other site"
/db_xref="CDD:29981"
misc_feature complement(188605..188745)
/locus_tag="Gdia_0173"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature complement(187861..188604)
/locus_tag="Gdia_0173"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(187924..188487)
/locus_tag="Gdia_0173"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(187927..187932,187939..187941,
187948..187953,187960..187962,187969..187974,
187978..187983,187990..187995,187999..188004,
188011..188013,188020..188025,188032..188034,
188041..188046,188053..188058,188062..188067,
188074..188076,188083..188088,188095..188097,
188104..188109,188146..188151,188158..188163,
188167..188172,188179..188184,188191..188193,
188200..188205,188212..188214,188221..188223,
188233..188235,188254..188256,188263..188265,
188275..188277,188284..188289,188296..188298,
188305..188307,188314..188319,188326..188331,
188338..188340,188347..188352,188356..188358,
188368..188373,188377..188382,188389..188391,
188398..188403,188410..188415,188422..188424,
188431..188436,188443..188445,188452..188457,
188461..188466,188473..188475,188482..188487))
/locus_tag="Gdia_0173"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(188188..188289)
/locus_tag="Gdia_0173"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(189656..191974)
/locus_tag="Gdia_0174"
/db_xref="GeneID:6973566"
CDS complement(189656..191974)
/locus_tag="Gdia_0174"
/note="TIGRFAM: TonB-dependent siderophore receptor;
PFAM: TonB-dependent receptor; TonB-dependent receptor
plug;
KEGG: gdi:GDI1948 putative TonB-dependent receptor"
/codon_start=1
/transl_table=11
/product="TonB-dependent siderophore receptor"
/protein_id="YP_002274588.1"
/db_xref="GI:209542359"
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR010105"
/db_xref="InterPro:IPR010917"
/db_xref="InterPro:IPR012910"
/db_xref="GeneID:6973566"
/translation="MSRKDRKGGQPFTMAGVGLVLLSSVSQAAESKSTTKPRPVLSGP
QQHASAPKSKPAAPATPVPTAQHILVTGRTVSGATADYNKKTAYLGPLGNRSILDTPM
SIQSVPHDVMVNQQTRNLNDLMGYMSSVQLEVRGDPNTSRPQSRGFEADVIANTRLDG
LNIVSTTPYAAEMFEDVQVLNGVAGALYGAQNPAGTFAFSTKRPTDTPINRLTVGVDS
IGTLMENADVSGRIGKNKWFGYRINLLHGDGTTYVQNSWMRRNLVSADFDIHFDPDTV
LELDASHYTYVQRGTTPGFNLAYNATSLPPAPDLSKPNLGQDYAGYNMETNLFMAKIK
HTINRDWSFTLGGNYEDSIRQVFSNTNTLTTGPVGEYTQTIAAAVTANDFRSGANLAY
VNGHFHTGFITHDIVAGTNGYMMGNYNPTQGETIALGKSNMYSPSVLSGSQPYYHGRY
ESAYIRNQAMILGDTLHLDRHWSIVGTLTWNWLSQDNRSTKSRTVKDGNTTYSYTTPL
GWTSKHIDGAFSPMASLVYKPAENQTAYFTYGRAIQAGVQAPASAANANQMTQPFRSE
EYEVGYKISYQKMLFSVAGFRMNRPYAYQDANGYFGTFGMQTNYGVEVQAQGRITPDL
SVLAGMTWLDAELGGTGNAATNNKEVVGAPPVQANILLDYRLPIPHGAFASGLAVNAN
VHYTGRRAATITNSAYADAYATLDLGIRYPFFAAHHPWAARFGVTNVANTQYWSSLYP
ASNNGSLNNDTGASSIYAGLPRMFHFTLEADF"
sig_peptide complement(191888..191974)
/locus_tag="Gdia_0174"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.994 at
residue 29"
misc_feature complement(189659..191680)
/locus_tag="Gdia_0174"
/note="TonB-dependent siderophore receptor; Region:
TonB-siderophor; TIGR01783"
/db_xref="CDD:162535"
misc_feature complement(189659..191668)
/locus_tag="Gdia_0174"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature complement(order(191372..191398,191432..191461,
191486..191509,191531..191548,191582..191611,
191639..191668))
/locus_tag="Gdia_0174"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature complement(order(190829..190831,190910..190912))
/locus_tag="Gdia_0174"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene complement(192510..193016)
/locus_tag="Gdia_0175"
/db_xref="GeneID:6973567"
CDS complement(192510..193016)
/locus_tag="Gdia_0175"
/note="PFAM: CinA domain protein;
KEGG: gdi:GDI1950 putative CinA-like"
/codon_start=1
/transl_table=11
/product="CinA domain-containing protein"
/protein_id="YP_002274589.1"
/db_xref="GI:209542360"
/db_xref="InterPro:IPR008136"
/db_xref="GeneID:6973567"
/translation="MTSMLDGTVLTQAAETLDRLRQAGLQVVTAESCTGGLVAAALTH
HAGSSDMVQGGFITYSNDMKTALLGVAPALLARHGAVSAEVAAAMAEGALSRAPHAAI
AVSITGIAGPGGGSASKPVGLVWFGTARRGGQTRTLSRHFGGDRTAVRQRAVVQALDL
ILQRIGTE"
misc_feature complement(192522..192980)
/locus_tag="Gdia_0175"
/note="Competence-damaged protein; Region: CinA;
pfam02464"
/db_xref="CDD:145546"
gene complement(193036..193515)
/locus_tag="Gdia_0176"
/db_xref="GeneID:6973568"
CDS complement(193036..193515)
/locus_tag="Gdia_0176"
/note="PFAM: phosphatidylglycerophosphatase A;
KEGG: gdi:GDI1951 putative phosphatidylglycerophosphatase"
/codon_start=1
/transl_table=11
/product="phosphatidylglycerophosphatase A"
/protein_id="YP_002274590.1"
/db_xref="GI:209542361"
/db_xref="InterPro:IPR007686"
/db_xref="GeneID:6973568"
/translation="MTPSRLIASFGGCGFSPFAPGTVGSLAALACGLGLLAHPLALAV
AIVLCCAIGYVATARASGGVDHGWIVIDEVAGMWITMFPLSLPPTPVHPWTPDRIGVL
WLVLAFALFRLFDITKPGPVGWFDRRHDAVGIMGDDIVAGLIGAFILAAIRCLIVMT"
sig_peptide complement(193423..193515)
/locus_tag="Gdia_0176"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.992) with cleavage site probability 0.882 at
residue 31"
misc_feature complement(193102..193503)
/locus_tag="Gdia_0176"
/note="Phosphatidylglycerophosphatase A; a bacterial
membrane-associated enzyme involved in lipid metabolism;
Region: PgpA; cd06971"
/db_xref="CDD:133477"
misc_feature complement(order(193168..193173,193177..193182,
193186..193194,193198..193206,193273..193275,
193282..193287,193291..193296,193303..193311,
193318..193320,193357..193359,193363..193368,
193375..193377,193429..193431,193495..193497))
/locus_tag="Gdia_0176"
/note="tetramer interfaces [polypeptide binding]; other
site"
/db_xref="CDD:133477"
misc_feature complement(order(193102..193107,193114..193116,
193297..193302,193309..193311))
/locus_tag="Gdia_0176"
/note="binuclear metal-binding site [ion binding]; other
site"
/db_xref="CDD:133477"
gene complement(193512..195533)
/locus_tag="Gdia_0177"
/db_xref="GeneID:6973569"
CDS complement(193512..195533)
/locus_tag="Gdia_0177"
/note="PFAM: Lytic transglycosylase catalytic;
Tetratricopeptide TPR_4;
KEGG: gdi:GDI1952 putative soluble lytic murein
transglycosylase precursor"
/codon_start=1
/transl_table=11
/product="lytic transglycosylase"
/protein_id="YP_002274591.1"
/db_xref="GI:209542362"
/db_xref="InterPro:IPR000189"
/db_xref="InterPro:IPR008258"
/db_xref="InterPro:IPR011717"
/db_xref="GeneID:6973569"
/translation="MRRLLPFFPLPVLACLALLGGSARADSSGLPEPPRSVPSDAVVP
PAVPDGTSDAVAARVDTYLRLLSPLGGDIDEYLSFLDQTPTWPRRAVMLGRLQRLMAV
AAPGVPGMAQACATLTLTYAPALAACARQPVPAPDLPARARHAWTEGVDQMEDEAAFL
AAFAPVLTPADQWHRFMRQELTGHLDAAQRQVARVDIGRQALARARLSLRMGWSDTPA
LLALVPPALSDDPVLVLDRIRWLRRSGQADLAAALWAQSGPAAEQRVADPAFAAAIKA
AFWAERDALAHDMMLAGRDKEALALATASDDMAPTDRNAARFLSGWILLQHDHDPHAA
LARFRPLCDASSLLTRSRGLYWTGRALSDLGDRDGARTAWGQAAALPGTFYGQMAASR
LAGDTASPLLFPERSGDLVRSRLGAIPGPVWTPDDKARFDASDLVQAARLLAARHDLG
HARDFLLLQDTRTGGTAGHVLAATLALQLGLPDVAVSIARRAGREGTALLPLGWPVPF
SPALSSVPGEGLPPGFLMAVIRQESGFDPGIVSPAGAYGLMQLMPAAARDVSRQARLA
TGPLTGARLTDPDLNIRIGSAYLVRLMQKFGGAVPYVLAAYNAGPHRADEWLALLGDP
ARGTPTADAMLDWIESIPFAETRSYIQRVEENMAIYQALAASAQAEAAP"
sig_peptide complement(195456..195533)
/locus_tag="Gdia_0177"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.989 at
residue 26"
misc_feature complement(193563..194483)
/locus_tag="Gdia_0177"
/note="Soluble lytic murein transglycosylase and related
regulatory proteins (some contain LysM/invasin domains)
[Cell envelope biogenesis, outer membrane]; Region: MltE;
COG0741"
/db_xref="CDD:31084"
misc_feature complement(193563..193970)
/locus_tag="Gdia_0177"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature complement(order(193713..193715,193770..193772,
193878..193880,193938..193940))
/locus_tag="Gdia_0177"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature complement(193938..193940)
/locus_tag="Gdia_0177"
/note="catalytic residue [active]"
/db_xref="CDD:29556"
gene complement(195574..196188)
/locus_tag="Gdia_0178"
/pseudo
/db_xref="GeneID:6973570"
gene 196367..197722
/locus_tag="Gdia_0179"
/db_xref="GeneID:6973571"
CDS 196367..197722
/locus_tag="Gdia_0179"
/note="Catalyzes two discrete reactions in the de novo
synthesis of purines: the cleavage of adenylosuccinate and
succinylaminoimidazole carboxamide ribotide"
/codon_start=1
/transl_table=11
/product="adenylosuccinate lyase"
/protein_id="YP_002274592.1"
/db_xref="GI:209542363"
/db_xref="InterPro:IPR000362"
/db_xref="InterPro:IPR003031"
/db_xref="InterPro:IPR004769"
/db_xref="GeneID:6973571"
/translation="MVPRYTRPAMAAIWAPENRYRIWFEIEAMACEAMAQYGAVPAEA
AKVVREKGDAAMAAFSQADLDRIDEIEAETRHDVIAFLTWLAEKIGPESRFVHLGMTS
SDVLDTCLSVQLVQATDMLLADLDAVLDALKRRAFEHKYTLTIGRSHAIHAEPTSFGL
KLAGHYAEFARNRERLVRARAEIATCAISGAVGTYAHVDPRVEEFVAARLGLEPEGVS
TQVIPRDRHAAYFCALAVIASGIERLAVEVRHLQRSEVREAEEFFHPGQKGSSAMPHK
RNPVLSENLTGLARLVRAHVIPALENVALWHERDISHSSVERNICPDGTIGLDFALAR
LAGMMDKLVIYPDRMIANLESLGGVVHSGEVLLALARAGILREDAYRIVQRNAMATWT
MLGKPGGRSFRENLEADPEVAGRVPASVLDAAMNSDSHLGALDHSYTRVFGEAGPGRA
G"
misc_feature 196367..197701
/locus_tag="Gdia_0179"
/note="adenylosuccinate lyase; Provisional; Region:
PRK07492"
/db_xref="CDD:181000"
misc_feature 196376..197524
/locus_tag="Gdia_0179"
/note="Adenylsuccinate lyase (ASL)_subgroup 1; Region:
Adenylsuccinate_lyase_1; cd01360"
/db_xref="CDD:176464"
misc_feature order(196409..196414,196595..196597,196622..196624,
196649..196654,196658..196663,196805..196822,
196826..196828,196844..196849,196856..196858,
196865..196870,196886..196891,196907..196909,
196937..196948,196955..196957,196961..196963,
197009..197011,197015..197020,197039..197041,
197051..197053,197072..197074,197093..197095,
197105..197107,197111..197116,197120..197125,
197195..197200,197213..197215,197225..197227,
197234..197239,197243..197248,197255..197260,
197267..197275,197279..197302,197309..197314,
197318..197323,197333..197335,197453..197455,
197465..197467,197474..197479,197492..197497)
/locus_tag="Gdia_0179"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176464"
misc_feature order(196592..196594,196655..196657,196811..196813,
197024..197026,197192..197194,197198..197200,
197213..197215)
/locus_tag="Gdia_0179"
/note="active site"
/db_xref="CDD:176464"
misc_feature 197435..197692
/locus_tag="Gdia_0179"
/note="Adenylosuccinate lyase C-terminus; Region: ADSL_C;
smart00998"
/db_xref="CDD:198066"
gene 197773..198516
/locus_tag="Gdia_0180"
/db_xref="GeneID:6973572"
CDS 197773..198516
/locus_tag="Gdia_0180"
/note="PFAM: protein of unknown function DUF833;
KEGG: gdi:GDI1955 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274593.1"
/db_xref="GI:209542364"
/db_xref="InterPro:IPR008551"
/db_xref="GeneID:6973572"
/translation="MCTIVLSLAPGSEWPLLLAANRDERLDRPWDAPGRHWPDRPSVI
GGRDRLAGGSWLALNDAGVVAGVMNRVGSLGPAAGKRSRGELPLMALEHTTATDAMRA
LATLDAGAWRSFNMVVADRRCAYFISGLGYATPEILRLEPGCHMAATTGPDDLSIPRI
GRHLPRFREPARPVPPDWTPWTRILSDRSLPAGSELNIPPRAGFGTCSSSVIGLPAAP
DAAPSWHFAAGAPDRVGYAPVDLRSGPAA"
misc_feature 197773..>198231
/locus_tag="Gdia_0180"
/note="NRDE protein; Region: NRDE; cl01315"
/db_xref="CDD:120558"
gene 198670..199434
/locus_tag="Gdia_0181"
/db_xref="GeneID:6973573"
CDS 198670..199434
/locus_tag="Gdia_0181"
/EC_number="6.3.2.6"
/note="catalyzes the formation of
(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-
carboxamido)succinate from
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and
L-aspartate in purine biosynthesis; SAICAR synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole-succinocarboxamide
synthase"
/protein_id="YP_002274594.1"
/db_xref="GI:209542365"
/db_xref="InterPro:IPR001636"
/db_xref="GeneID:6973573"
/translation="MARRRQLYEGKAKILFEGPEPGTLVQYFKDDATAGNGAKKGIIT
GKGVLNNRISEHLMLRLHDIGIPTHFIRRLNMREQLIREVEIIPLEVVVRNVAAGSLA
KRLGIPEGTRLPRTIIEYYYKNDSLNDPMVSEEHITAFGWACTHDLDDMVALTMRTND
FLSGLFVGIGITLVDFKLEFGRLWEGEDMRIVLADEISPDNCRLWDAKTSEKLDKDRF
RRDMGRVEEAYQEVAWRLGILPEATNSDMKGPEVMQ"
misc_feature 198670..199392
/locus_tag="Gdia_0181"
/note="phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed; Region: PRK09362"
/db_xref="CDD:181800"
misc_feature 198688..199383
/locus_tag="Gdia_0181"
/note="bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
(SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415"
/db_xref="CDD:133470"
misc_feature order(198688..198693,198697..198702,198706..198708,
198712..198717,198739..198741,198745..198747,
198874..198876,198913..198915,198919..198921,
198925..198927,199036..199038,199204..199206,
199249..199254)
/locus_tag="Gdia_0181"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133470"
misc_feature order(198691..198693,198697..198708,198712..198714,
198739..198741,198775..198777,198877..198879,
198910..198921,198925..198927,198937..198939,
198943..198945,198949..198951,198961..198969,
199030..199032,199036..199038,199054..199056,
199192..199200,199204..199206,199252..199254,
199267..199278)
/locus_tag="Gdia_0181"
/note="active site"
/db_xref="CDD:133470"
misc_feature order(198775..198777,198937..198939,198943..198945,
198949..198951,198961..198969,199030..199032,
199054..199056,199192..199200,199267..199278)
/locus_tag="Gdia_0181"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133470"
gene 199431..199673
/locus_tag="Gdia_0182"
/db_xref="GeneID:6973574"
CDS 199431..199673
/locus_tag="Gdia_0182"
/note="TIGRFAM: phosphoribosylformylglycinamidine
synthase, purS;
PFAM: phosphoribosylformylglycinamidine synthetase PurS;
KEGG: gdi:GDI1957 putative
phosphoribosylformylglycinamidine synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine synthase PurS"
/protein_id="YP_002274595.1"
/db_xref="GI:209542366"
/db_xref="InterPro:IPR000169"
/db_xref="InterPro:IPR003850"
/db_xref="GeneID:6973574"
/translation="MKVRVTVMLKDGVLDPQGKAVAHALHVLGFGGVGEVRIGRVIEL
ELDETDPAAAREKADAMARGLLANLVIEDFVTEVVA"
misc_feature 199431..199667
/locus_tag="Gdia_0182"
/note="Phosphoribosylformylglycinamidine (FGAM) synthase;
Region: PurS; pfam02700"
/db_xref="CDD:202354"
gene 199670..200065
/locus_tag="Gdia_0183"
/db_xref="GeneID:6973575"
CDS 199670..200065
/locus_tag="Gdia_0183"
/note="KEGG: gdi:GDI1958 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274596.1"
/db_xref="GI:209542367"
/db_xref="GeneID:6973575"
/translation="MTARRSVFLLAAALAAGSAVASLPSSAMAQRVSTLKGGRFLEFC
SRAPSVAICDAYLSGLADAVALTHVYDKNQGDKTTPTGFCIAPGATSAEMRGHVVTWL
HGHSDQLSKPVGELVFTALHESYPCGGGK"
sig_peptide 199670..199759
/locus_tag="Gdia_0183"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.724 at
residue 30"
gene 200062..200763
/locus_tag="Gdia_0184"
/db_xref="GeneID:6973576"
CDS 200062..200763
/locus_tag="Gdia_0184"
/EC_number="6.3.5.3"
/note="catalyzes the formation of
2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from
N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and
L-glutamine in purine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine synthase I"
/protein_id="YP_002274597.1"
/db_xref="GI:209542368"
/db_xref="InterPro:IPR010075"
/db_xref="InterPro:IPR011698"
/db_xref="GeneID:6973576"
/translation="MKAGIVVFPGTNRERDMAIALRSVTGRAPAMIWHRDTDLPDLDL
VVLAGGFSYGDYLRCGAMAAHAPIMAAVRRFAEAGGHILGVCNGFQILTETGLLPGAL
LRNAALRFLSQDCHLRVERNDTPFTRRWQVGDVFRTPMAHGDGNYIADDATIHALEDE
GRVAFRYARPDGRVDAGDRQTNPNGSVNAIAGVFSANLRICGMMPHPEDLVDPLMGGE
DGKPLFEGLVEALVR"
misc_feature 200068..200745
/locus_tag="Gdia_0184"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in Formylglycinamide ribonucleotide
amidotransferase; Region: GATase1_FGAR_AT; cd01740"
/db_xref="CDD:153211"
misc_feature order(200209..200214,200224..200226,200317..200319,
200329..200331,200482..200487,200671..200673,
200677..200688)
/locus_tag="Gdia_0184"
/note="putative active site [active]"
/db_xref="CDD:153211"
misc_feature order(200317..200319,200677..200679,200683..200685)
/locus_tag="Gdia_0184"
/note="catalytic triad [active]"
/db_xref="CDD:153211"
gene 200760..202973
/locus_tag="Gdia_0185"
/db_xref="GeneID:6973577"
CDS 200760..202973
/locus_tag="Gdia_0185"
/EC_number="6.3.5.3"
/note="catalyzes the formation of
2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from
N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and
L-glutamine in purine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine synthase II"
/protein_id="YP_002274598.1"
/db_xref="GI:209542369"
/db_xref="InterPro:IPR000728"
/db_xref="InterPro:IPR010074"
/db_xref="InterPro:IPR010918"
/db_xref="GeneID:6973577"
/translation="MSSEKGQRPVDQDLAKEFGLTAEEYGNVLSIMGRTPSLTELGIF
SVMWSEHCSYKSSRVWLKTLPTTAPWVIHGPGENAGVVDIGQGLAAIFKMESHNHPSF
IEPYQGAATGVGGILRDVFTMGARPVANLNALRFGSPENPQTRRIIDGVVRGVGGYGN
CVGVPTVGGEINFHPSYDGNPLVNAMTVGIARQDRIFLSAAAGVGNPVIYVGSKTGRD
GIHGATMSSSEFDEDALAKRPTVQVGDPFVEKLLIEACLELMATDAIVAIQDMGAAGL
TSSSVEMAGKGGVGIDLDLDAVPQRERGMTAYEMMLSESQERMLIVIRPDRTDVARAI
FEKWELDFAVIGHLTETGHIVVRHQGRVEADIPLDPLADQAPIYRRPTAPAPVPAPLG
PLTDPVGIEQALIRLIGCPDLASRAWVWNQYDSTVGGQTVKRPGGADAAIVKIEDTSL
GLALTTDCTPRYCRADARLGGAQAVAEAWRNIVATGARPLAVTDNLNFGSPEKPEVMG
QFVAAIEGMGEACRALDFPVVSGNVSLYNETRAPDGSSVSILPTPAIGGLGVLEDVTK
AVGLAMPADCILVLVGTTRGEMGQSLWLREIHGREDGPPPALDLAAERRNGDFVRGQI
QDGHVVACHDVADGGLLVTLAEMVMAGDVGCVLSAPQSGIRPEAFWFGEDQSRYVVAV
RDADAFTLAATGAGVETRVLGRSGGDGLTLPSGATISTARLNAVNSAFFPALMDR"
misc_feature 200784..202970
/locus_tag="Gdia_0185"
/note="phosphoribosylformylglycinamidine synthase II;
Provisional; Region: PRK01213"
/db_xref="CDD:179249"
misc_feature 200877..201857
/locus_tag="Gdia_0185"
/note="PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP; Region:
PurL_repeat1; cd02203"
/db_xref="CDD:100034"
misc_feature order(201024..201035,201039..201041,201114..201116,
201144..201146,201153..201155,201162..201164,
201267..201269,201300..201305,201315..201317)
/locus_tag="Gdia_0185"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100034"
misc_feature order(201102..201104,201114..201116,201261..201269)
/locus_tag="Gdia_0185"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100034"
misc_feature 202074..202871
/locus_tag="Gdia_0185"
/note="PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP; Region:
PurL_repeat2; cd02204"
/db_xref="CDD:100035"
misc_feature order(202110..202121,202125..202127,202200..202202,
202236..202238,202245..202247,202254..202256,
202353..202355,202410..202415,202425..202427)
/locus_tag="Gdia_0185"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100035"
misc_feature order(202188..202190,202200..202202,202347..202355)
/locus_tag="Gdia_0185"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100035"
gene 203000..203236
/locus_tag="Gdia_0186"
/db_xref="GeneID:6973578"
CDS 203000..203236
/locus_tag="Gdia_0186"
/note="PFAM: BolA family protein;
KEGG: gdi:GDI1961 putative BolA protein"
/codon_start=1
/transl_table=11
/product="BolA family protein"
/protein_id="YP_002274599.1"
/db_xref="GI:209542370"
/db_xref="InterPro:IPR002634"
/db_xref="GeneID:6973578"
/translation="MAMTAQEIETYIRTALPDASISIEDLAGDGDHYACTVVSEAFRG
LSRVRQHQVVYAALQGHMGGKLHALALQTNVPER"
misc_feature 203000..203233
/locus_tag="Gdia_0186"
/note="Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms]; Region: BolA; COG0271"
/db_xref="CDD:30620"
gene 203297..203632
/locus_tag="Gdia_0187"
/db_xref="GeneID:6973579"
CDS 203297..203632
/locus_tag="Gdia_0187"
/note="TIGRFAM: glutaredoxin-like protein;
PFAM: glutaredoxin;
KEGG: gdi:GDI1962 putative monothiol glutaredoxin"
/codon_start=1
/transl_table=11
/product="glutaredoxin-like protein"
/protein_id="YP_002274600.1"
/db_xref="GI:209542371"
/db_xref="InterPro:IPR002109"
/db_xref="InterPro:IPR004480"
/db_xref="GeneID:6973579"
/translation="MADTITQRIQNDIDTNPVMLYMKGTAQFPQCGFSAKVVKILNHL
GVPFQAANVLEDAELRQGVKDFTNWPTVPQLYVKGEFIGGCDIVSEMFQTGELEKLFV
EKGIVTASA"
misc_feature 203321..203590
/locus_tag="Gdia_0187"
/note="Glutaredoxin (GRX) family, PKC-interacting cousin
of TRX (PICOT)-like subfamily; composed of PICOT and
GRX-PICOT-like proteins. The non-PICOT members of this
family contain only the GRX-like domain, whereas PICOT
contains an N-terminal TRX-like domain...; Region:
GRX_PICOT_like; cd03028"
/db_xref="CDD:48577"
misc_feature order(203363..203365,203387..203395,203507..203512)
/locus_tag="Gdia_0187"
/note="putative GSH binding site [chemical binding]; other
site"
/db_xref="CDD:48577"
misc_feature order(203387..203389,203396..203398)
/locus_tag="Gdia_0187"
/note="catalytic residues [active]"
/db_xref="CDD:48577"
gene 203774..204115
/locus_tag="Gdia_0188"
/db_xref="GeneID:6973580"
CDS 203774..204115
/locus_tag="Gdia_0188"
/note="KEGG: gdi:GDI1963 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274601.1"
/db_xref="GI:209542372"
/db_xref="GeneID:6973580"
/translation="MFRVAIRKAALSLLGTGMALLAVGTTSAHAQHMVTDIEAGRLTL
DALTAPPPPVRHIVYRRAVRTAPVHAYRTALASGTHGLGTHGLVRNVVYHPAHAASSG
RHVAHKGRHRT"
sig_peptide 203774..203866
/locus_tag="Gdia_0188"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.961 at
residue 31"
gene complement(204143..204526)
/locus_tag="Gdia_0189"
/db_xref="GeneID:6973581"
CDS complement(204143..204526)
/locus_tag="Gdia_0189"
/note="PFAM: protein of unknown function UPF0102;
KEGG: gdi:GDI1964 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274602.1"
/db_xref="GI:209542373"
/db_xref="InterPro:IPR003509"
/db_xref="GeneID:6973581"
/translation="MMVEPTRRRVRGAASYQRGLQAEQVAGAWLQEHGWTILMHRART
RWGEIDLVAQRGAMIVFCEVKCRPHYTAAAESLGRAQMRRLMNAAAWLCAAHPGWIYD
EMRFDVLLVTAGDAVHHITDAFRME"
misc_feature complement(204152..204496)
/locus_tag="Gdia_0189"
/note="hypothetical protein; Reviewed; Region: PRK12497"
/db_xref="CDD:183560"
gene 204606..206024
/locus_tag="Gdia_0190"
/db_xref="GeneID:6973582"
CDS 204606..206024
/locus_tag="Gdia_0190"
/note="PFAM: phospholipase D/Transphosphatidylase;
KEGG: gdi:GDI1965 putative cardiolipin synthetase 1"
/codon_start=1
/transl_table=11
/product="phospholipase D/transphosphatidylase"
/protein_id="YP_002274603.1"
/db_xref="GI:209542374"
/db_xref="InterPro:IPR001736"
/db_xref="GeneID:6973582"
/translation="MLLTYWHTVLLLVLLSRVVVALSVAVHVLLNKRDVGAAIGWIGI
SILMPFTGGVLYAMFGINRVHRRARKLIGRSSWHSRTLSSRWKRAEQGHFAPLSNMVG
KLTGRPLMSGNGICMLHDGDQAYPQMLDAIGGATSSVLLSSYIFRGDDAGDRFIAALI
GAHQRGIAVRVLVDGVGSGYFRCPVTHALHRAGVPVGRFMHSLLPWRMPFINMRNHKK
ILVVDGQLGFMGGLNIGAENVVASHPAHPVSDTHFRVEGPIVHQLTEAFAQDWSFTTG
EDLPVDPFFPEVSQHGDILARIVTAGPDSDLEKIEFTMLQAITMARHSVRLMTPYFLP
GERFLTELALAALRGIEVDIVIPGRSNHTLIDWARSANLPRFLDSGCRVWRASPPFNH
SKLMVVDQHWAFVGSSNLDVRSLRLNFEINLEAYDDAMAGLIDAFIIRHRHERLTHHD
LDRRILPIRLRDAGARLFLPYL"
sig_peptide 204606..204671
/locus_tag="Gdia_0190"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.885) with cleavage site probability 0.581 at
residue 22"
misc_feature 204747..206021
/locus_tag="Gdia_0190"
/note="Phosphatidylserine/phosphatidylglycerophosphate/car
diolipin synthases and related enzymes [Lipid metabolism];
Region: Cls; COG1502"
/db_xref="CDD:31691"
misc_feature 204960..205424
/locus_tag="Gdia_0190"
/note="Putative catalytic domain, repeat 1, of
uncharacterized proteins similar to bacterial cardiolipin
synthase; Region: PLDc_CLS_unchar2_1; cd09157"
/db_xref="CDD:197254"
misc_feature order(205251..205253,205257..205259,205296..205298,
205302..205304,205353..205355)
/locus_tag="Gdia_0190"
/note="putative active site [active]"
/db_xref="CDD:197254"
misc_feature 205251..205253
/locus_tag="Gdia_0190"
/note="catalytic site [active]"
/db_xref="CDD:197254"
misc_feature 205500..206021
/locus_tag="Gdia_0190"
/note="Putative catalytic domain, repeat 2, of
uncharacterized proteins similar to bacterial cardiolipin
synthase; Region: PLDc_CLS_unchar2_2; cd09163"
/db_xref="CDD:197260"
misc_feature order(205779..205781,205785..205787,205824..205826,
205830..205832,205863..205865)
/locus_tag="Gdia_0190"
/note="putative active site [active]"
/db_xref="CDD:197260"
misc_feature 205779..205781
/locus_tag="Gdia_0190"
/note="catalytic site [active]"
/db_xref="CDD:197260"
gene complement(206015..206722)
/locus_tag="Gdia_0191"
/db_xref="GeneID:6973583"
CDS complement(206015..206722)
/locus_tag="Gdia_0191"
/note="PFAM: Endonuclease/exonuclease/phosphatase;
KEGG: gdi:GDI1966 putative
endonuclease/exonuclease/phosphatase family"
/codon_start=1
/transl_table=11
/product="endonuclease/exonuclease/phosphatase"
/protein_id="YP_002274604.1"
/db_xref="GI:209542375"
/db_xref="InterPro:IPR005135"
/db_xref="GeneID:6973583"
/translation="MSIVRPYPPSAPHLRPGQRPRPAHLPANAGGSERKIVSWNLLRL
VGASPRDVIHLIEQERPDLLLMQEATSDFDALPHLIGGHYARSPLPGRIHGVACWSPS
PFRRQPLTCTLPSGPLVRRVAQMIECASFAFTVANVHLSHGQIMNRRQLRRLGEILPA
HAAVLGDFNLVGPTLMPHFRDVGPRAPTHRMVDMVPIRIDRCLVRGLSCTEARVLDNY
TSDHCPITVRLERSGYK"
misc_feature complement(206036..206620)
/locus_tag="Gdia_0191"
/note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
superfamily; Region: EEP; cl00490"
/db_xref="CDD:207076"
misc_feature complement(order(206057..206062,206123..206125,
206216..206218,206222..206224,206306..206308,
206519..206521,206603..206605))
/locus_tag="Gdia_0191"
/note="putative catalytic site [active]"
/db_xref="CDD:197306"
misc_feature complement(order(206060..206062,206519..206521))
/locus_tag="Gdia_0191"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197306"
misc_feature complement(order(206057..206059,206216..206218,
206306..206308))
/locus_tag="Gdia_0191"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197306"
gene complement(206719..207795)
/locus_tag="Gdia_0192"
/db_xref="GeneID:6973584"
CDS complement(206719..207795)
/locus_tag="Gdia_0192"
/note="PFAM: protein of unknown function UPF0118;
KEGG: gdi:GDI1967 putative inner membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274605.1"
/db_xref="GI:209542376"
/db_xref="InterPro:IPR002549"
/db_xref="GeneID:6973584"
/translation="MAERIMMGLLLGGVAFGCGAILYPFMSALLWAAILTFATWPLFI
RLRRRTGPVTAAIGMTVLSALVVALPLAVVVSTSIADLPGTFEGLAETLARLIHLPAP
PPWLARIPHFGPDLAKIWTQWATDLGHAERMLLPYTGSIAQSMLAGLMQVASGLVHLG
MALFIAFFFWLGGDSLGGTFSAVIRRIAGSYADRILSIIGRTIRGTVYGILGTAIVQG
VLTGLGFALTGLPEPVLFGLITACVAVLPIGAPLIWIPGALALILTHHPGWGIFLVVY
GVLIISGADHIIRPMFISRGAQLPYLLTVLGVLGGVWTFGGLGIFLGPVLLGVGYTLT
AEFAANGSGHTGNATPIQENFIEP"
misc_feature complement(206785..207795)
/locus_tag="Gdia_0192"
/note="Predicted permease, member of the PurR regulon
[General function prediction only]; Region: yhhT; COG0628"
/db_xref="CDD:30973"
sig_peptide complement(207697..207795)
/locus_tag="Gdia_0192"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.994 at
residue 33"
misc_feature complement(206794..207786)
/locus_tag="Gdia_0192"
/note="pheromone autoinducer 2 transporter; Reviewed;
Region: tqsA; cl00465"
/db_xref="CDD:207060"
gene 208005..208859
/locus_tag="Gdia_0193"
/db_xref="GeneID:6973585"
CDS 208005..208859
/locus_tag="Gdia_0193"
/note="PFAM: Rhodanese domain protein;
KEGG: gdi:GDI1968 3-mercaptopyruvate sulfurtransferase"
/codon_start=1
/transl_table=11
/product="rhodanese domain-containing protein"
/protein_id="YP_002274606.1"
/db_xref="GI:209542377"
/db_xref="InterPro:IPR001307"
/db_xref="InterPro:IPR001763"
/db_xref="GeneID:6973585"
/translation="MHPLISPAQLQERLAAPDLVVLDATMALPGETFDPARCFAQAHI
PGARRFDIELFSDPDSPLPHMIPTQARFEHLARGLGLSDGAHVVFYDQGNAASAARGW
WLAGLFGLDRVQVLDGGLPAWQRAGGPVEQGEEGPAAAGGFRAAPRFARVSGLGDMRA
HVGRGDRLILDARAQARFAGTAAEPRPGLASGHMPGARNLPFGTLLDANRAFLPPAAL
RDRFAHVGVTDGRPVVTTCGSGVSAAVLSLGLAICGRTGDSLYDGSWAEWGSTPGAPV
ETGEGTSP"
misc_feature 208011..208844
/locus_tag="Gdia_0193"
/note="Rhodanese-related sulfurtransferase [Inorganic ion
transport and metabolism]; Region: SseA; COG2897"
/db_xref="CDD:32722"
misc_feature 208014..208379
/locus_tag="Gdia_0193"
/note="Thiosulfate sulfurtransferase (TST), N-terminal,
inactive domain. TST contains 2 copies of the Rhodanese
Homology Domain; this is the 1st repeat, which does not
contain the catalytically active Cys residue. The role of
the 1st repeat is uncertain, but it...; Region:
TST_Repeat_1; cd01448"
/db_xref="CDD:29079"
misc_feature 208275..208277
/locus_tag="Gdia_0193"
/note="active site residue [active]"
/db_xref="CDD:29079"
misc_feature 208473..208814
/locus_tag="Gdia_0193"
/note="Thiosulfate sulfurtransferase (TST), C-terminal,
catalytic domain. TST contains 2 copies of the Rhodanese
Homology Domain; this is the second repeat. Only the
second repeat contains the catalytically active Cys
residue; Region: TST_Repeat_2; cd01449"
/db_xref="CDD:29080"
misc_feature 208713..208715
/locus_tag="Gdia_0193"
/note="active site residue [active]"
/db_xref="CDD:29080"
gene 208856..210106
/locus_tag="Gdia_0194"
/db_xref="GeneID:6973586"
CDS 208856..210106
/locus_tag="Gdia_0194"
/note="TIGRFAM: cystathionine beta-lyase;
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent
protein;
KEGG: gdi:GDI1969 putative cystathionine beta-lyase"
/codon_start=1
/transl_table=11
/product="cystathionine beta-lyase"
/protein_id="YP_002274607.1"
/db_xref="GI:209542378"
/db_xref="InterPro:IPR000277"
/db_xref="InterPro:IPR006233"
/db_xref="GeneID:6973586"
/translation="MTDRQALHHAVSRGWRHMGTTLVHLARDLPPAAEGTLVNPASTR
GSTVLFPTVADMNRNGTRRYDHELIYGAMGTPIQHQLESAIAALEGARHTQVVSSGLA
ACSTPLLAFLGKNGHCLIPDSVYGPTRRFANTVLRRFGVETTYYPPMIDADGLRAAMR
PNTQVVFAESPGSHTFEVQDIRMIADIAHEHGARMMLDNTWGIGVFQPFDHGVDISIQ
ALTKYPAGHSDSIIGAVSVADEQDWQALRDTSIQLGQVAGPDDCWLTLRGLRTMGARL
ERQSRAAIDIALWLSDRPEVARVLHPALPSCPGHEIWRRDYTGASALFGVVFQPEYDA
AAMTAMIDSLALFGIGASWGGYESLVLPTTGGITRSCPPGEECGPQTGPACRLHIGLE
NPEDLIADLSAGLEVLAGGAVYGA"
misc_feature 208856..210085
/locus_tag="Gdia_0194"
/note="cystathionine beta-lyase; Provisional; Region:
PRK05967"
/db_xref="CDD:168319"
misc_feature 208967..210073
/locus_tag="Gdia_0194"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature order(209153..209158,209165..209167,209360..209362,
209447..209449,209456..209458,209510..209512,
209519..209521)
/locus_tag="Gdia_0194"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 209519..209521
/locus_tag="Gdia_0194"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(210408..211274)
/locus_tag="Gdia_0195"
/db_xref="GeneID:6973587"
CDS complement(210408..211274)
/locus_tag="Gdia_0195"
/EC_number="3.5.2.6"
/note="PFAM: beta-lactamase;
KEGG: gdi:GDI1971 putative beta-lactamase precursor"
/codon_start=1
/transl_table=11
/product="Beta-lactamase"
/protein_id="YP_002274608.1"
/db_xref="GI:209542379"
/db_xref="InterPro:IPR000871"
/db_xref="InterPro:IPR001466"
/db_xref="GeneID:6973587"
/translation="MKRRHFLWGGSTFLASPSLARPAPPSVISDYENGTGGHIGLYAE
NVKTGAKLTWRARERFVMCSTVKASLAACVLSRVDRGRDRLEDIIPYSASDIQDWYAP
VAKANLARGAMSVGDMCQAAVEQSDNTCANILLARIGGPSALTAFWRGIGDRETRLDD
PEPYLNRTPPGGVRNTTTPASMATIMRSLVLGRVLSDASRAIFTRWLVGCRTGDDRLR
AGLPPHWVIGDKTGNNGRDAAGDIAVVWPERDVPIILCVYTRGGSPTQQQFRTAFAGI
ARVVGTRLYPGI"
sig_peptide complement(211212..211274)
/locus_tag="Gdia_0195"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.999 at
residue 21"
misc_feature complement(210504..211139)
/locus_tag="Gdia_0195"
/note="Beta-lactamase enzyme family; Region:
Beta-lactamase2; pfam13354"
/db_xref="CDD:205534"
gene complement(211281..212792)
/locus_tag="Gdia_0196"
/db_xref="GeneID:6973588"
CDS complement(211281..212792)
/locus_tag="Gdia_0196"
/note="KEGG: gdi:GDI1972 putative Mg chelatase-related
protein;
TIGRFAM: Mg chelatase, subunit ChlI;
PFAM: magnesium chelatase ChlI subunit;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="Mg chelatase subunit ChlI"
/protein_id="YP_002274609.1"
/db_xref="GI:209542380"
/db_xref="InterPro:IPR000523"
/db_xref="InterPro:IPR001208"
/db_xref="InterPro:IPR001395"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004482"
/db_xref="GeneID:6973588"
/translation="MTISCVLGFAFSGIDAIPVRVEVQLASGLPSFLIVGLADKAVAE
ARERVRAALSAMGLTLPAKRIVVNLAPANIVKEGSHFDLPIALALLTAMGVVPSEESG
RFAAIGELSLDGRINPVPGVLPAALCAVDQSRGLICGAQQGHEARWAGDGLDILAPDS
LLALVNHMTGEQVLPPVELPERLPVESIGTGPDLADVRGMETARRALEIAAAGAHSLL
MTGPPGAGKSMLAARLPSLLPDLTSTEILEISRIHSISGHLPMGLPVFRPPFRDPHHS
TSQIALVGGGNGNRIRPGEVSLAHRGVLFLDELPEFSRAALEALRQPIETGTITVARA
SAHVTYPARFQLVAAMNPCRCGYLGDASQECRKAPRCGEEYLSRISGPMLDRMDMAVH
VEPVSPAELAGLPTGENSAAVAARVAVARTRQTARQDGLTNAEAPPDLFPTSTAARDY
AVRAADRLRLSARGFTRLLRVARTIADLAGDEETGQPHVAEAVSYRLRRPDRR"
misc_feature complement(211305..212750)
/locus_tag="Gdia_0196"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:30951"
misc_feature complement(212367..212732)
/locus_tag="Gdia_0196"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature complement(211590..212216)
/locus_tag="Gdia_0196"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase; pfam01078"
/db_xref="CDD:144608"
misc_feature complement(211305..>211499)
/locus_tag="Gdia_0196"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:205515"
gene 213112..213354
/locus_tag="Gdia_0197"
/db_xref="GeneID:6973589"
CDS 213112..213354
/locus_tag="Gdia_0197"
/note="PFAM: helix-turn-helix domain protein;
KEGG: gdi:GDI1973 putative HTH-type transcriptional
regulator"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_002274610.1"
/db_xref="GI:209542381"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:6973589"
/translation="MHNRIAMFRAERGLTRRALAEAVEVNPQTIGYLERGDYKPSLEL
ALKICRVLGVEVDMVFSLEPFESVAEQMRRAMRNGS"
misc_feature 213118..213282
/locus_tag="Gdia_0197"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(213127..213129,213139..213141,213214..213216)
/locus_tag="Gdia_0197"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(213136..213138,213211..213213)
/locus_tag="Gdia_0197"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(213157..213162,213193..213195,213202..213204,
213214..213219)
/locus_tag="Gdia_0197"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 213375..213953
/locus_tag="Gdia_0198"
/db_xref="GeneID:6973590"
CDS 213375..213953
/locus_tag="Gdia_0198"
/note="KEGG: gdi:GDI1974 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274611.1"
/db_xref="GI:209542382"
/db_xref="GeneID:6973590"
/translation="MVPVNPWSTPDRSIAAFLDVPAKAFAQGMDRIGMPVLADNPDMK
RDPASVRYRWRPALILLLTIVNLTWLSISPHPSPLLFMYVQIGLSGWLSGLVYKFAQA
LGPVFEWDERQQALAGAAREKGLMGALLLTYTGLGVLLWQLLAAAQRRVDFLLPRLAT
EIILLLTATVIVYQCIRLLYLSWADRSLPDPE"
gene 214033..214563
/locus_tag="Gdia_0199"
/db_xref="GeneID:6973591"
CDS 214033..214563
/locus_tag="Gdia_0199"
/note="PFAM: GCN5-related N-acetyltransferase;
KEGG: pfl:PFL_4654 acetyltransferase, GNAT family family"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_002274612.1"
/db_xref="GI:209542383"
/db_xref="InterPro:IPR000182"
/db_xref="GeneID:6973591"
/translation="MEAALYIRRAKPDDCALIFAIHKDSVLGLCASHYSDTQMSAWFE
GRASDDYTTAVELGSCWIAYKADDPVGFLGLFANRISMIFVQSAASGQGIGTILLHFA
LDRIREAGNSSAILDATLNAQGFYEKYGFRKVADSHLVRPSGMKIETVVMERSIRSPP
RGRNRDRTVADGRAMS"
misc_feature 214072..214425
/locus_tag="Gdia_0199"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_10; pfam13673"
/db_xref="CDD:205850"
misc_feature 214210..214383
/locus_tag="Gdia_0199"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(214279..214287,214315..214320)
/locus_tag="Gdia_0199"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(214484..215329)
/locus_tag="Gdia_0200"
/db_xref="GeneID:6973592"
CDS complement(214484..215329)
/locus_tag="Gdia_0200"
/note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta
hydroxysteroid dehydrogenase/isomerase;
dTDP-4-dehydrorhamnose reductase; NmrA family protein;
KEGG: gdi:GDI1975 putative transcriptional regulator
NmrA-like"
/codon_start=1
/transl_table=11
/product="NmrA family protein"
/protein_id="YP_002274613.1"
/db_xref="GI:209542384"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR008030"
/db_xref="GeneID:6973592"
/translation="MTILVIGGTGTIGSQVLAYLDGQGGEVRVLTRAPDTARLPAGTV
PVKGDLSDIDSVRAAMDGVDTLFLLAPNAADELTQAMLTLNVAREAGVKGIVYLSVFK
GEEYADVPHFIGKYAVERMIADCDLPATVLRPAYFFQNDVRQKDALLTQGLYASPVGT
KGISMVDTRDIGEAAAPLPRETYELVGPDGLTGAAIAAIWSEILDRPIRYGGDDLDTM
EQRLRAFAPAWQAYDLKLMFRRYQQDGATATAAQIDRLTTLLGHPPRSYRDFAHAVAS
EWTAP"
misc_feature complement(214700..215323)
/locus_tag="Gdia_0200"
/note="NmrA-like family; Region: NmrA; pfam05368"
/db_xref="CDD:191263"
misc_feature complement(214700..215323)
/locus_tag="Gdia_0200"
/note="NmrA (a transcriptional regulator) and HSCARG (an
NADPH sensor) like proteins, atypical (a) SDRs; Region:
NmrA_like_SDR_a; cd05251"
/db_xref="CDD:187561"
misc_feature complement(order(214910..214912,214919..214930,
214985..214987,215030..215032,215111..215113,
215117..215122,215234..215236,215294..215305,
215309..215311))
/locus_tag="Gdia_0200"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187561"
misc_feature complement(order(214985..214987,214997..214999))
/locus_tag="Gdia_0200"
/note="active site"
/db_xref="CDD:187561"
misc_feature complement(214802..214804)
/locus_tag="Gdia_0200"
/note="regulatory binding site [polypeptide binding];
other site"
/db_xref="CDD:187561"
mobile_element complement(215520..216695)
/mobile_element_type="insertion sequence:Gdi4"
gene complement(215536..216593)
/locus_tag="Gdia_0201"
/note="ribosomal slippage"
/db_xref="GeneID:6973593"
CDS complement(join(215536..216105,216105..216593))
/locus_tag="Gdia_0201"
/ribosomal_slippage
/note="KEGG: gdi:GDI3803 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase IS630"
/protein_id="YP_002274614.1"
/db_xref="GI:209542385"
/db_xref="GeneID:6973593"
/translation="MGGALALREDYDAAGLRALARTTRHAGQARRLLALAAIYDGASR
GDAARLAGTDRQIVRDWVVRFNAEGPDGVRDHHGGGVVPRLTPAMLEALMRRIEDGPI
AAVHGVVRWRQADLGQWLYEEFGVSLSRSRLSAVIRGLDFRLLTGRPRHHAQDPEAQD
VFKKSFPDVMAGIRARHPGKAIELWWGDEARVGQKTKLTRRWARRGTRPRAPADQRTR
SAWIFGAICPALGKGAALVLPWCNLHAMNRHLDEISQAVAPGAHAILIVDQAAWHTSP
KLDIPANITILPLPPRSPELNPVENVWQFMRNTWLSNRIFRTYDDIVDICCHAWNQLV
DQPWRIMSLGLRQWAHGF"
misc_feature complement(216180..216482)
/locus_tag="Gdia_0201"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:205729"
misc_feature complement(join(216103..216105,216105..216266))
/locus_tag="Gdia_0201"
/note="Winged helix-turn helix; Region: HTH_33; pfam13592"
/db_xref="CDD:205770"
misc_feature complement(215629..216048)
/locus_tag="Gdia_0201"
/note="DDE superfamily endonuclease; Region: DDE_3;
pfam13358"
/db_xref="CDD:205537"
misc_feature complement(215569..215865)
/locus_tag="Gdia_0201"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3335"
/db_xref="CDD:33144"
gene complement(216655..217341)
/locus_tag="Gdia_0202"
/db_xref="GeneID:6973594"
CDS complement(216655..217341)
/locus_tag="Gdia_0202"
/note="KEGG: gdi:GDI1976 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274615.1"
/db_xref="GI:209542386"
/db_xref="InterPro:IPR001063"
/db_xref="GeneID:6973594"
/translation="MIRGIILVAVGGAALSMACFGVASVRGPMGWHVPDLGVLIDDDG
DAPQSPMASRTLDWKGGEALTFELPATIVYTQGPTSSITVSGPKRAIDRVTLDDDVID
LDHESTRSWHIHHLRIVVTAPGLKALTVRSAGSLTLQNVAVDHLRLTVEGAADVVGHG
RADAITLNVAGAAHADLSDMVVRDADIDIEGAGHVTAGPTGRASIHLSGIGAVELIPT
PVRPDSYVIA"
sig_peptide complement(217276..217341)
/locus_tag="Gdia_0202"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.993) with cleavage site probability 0.551 at
residue 22"
misc_feature complement(216685..217155)
/locus_tag="Gdia_0202"
/note="Protein of unknown function (DUF2807); Region:
DUF2807; pfam10988"
/db_xref="CDD:192686"
gene complement(217408..217974)
/locus_tag="Gdia_0203"
/db_xref="GeneID:6973595"
CDS complement(217408..217974)
/locus_tag="Gdia_0203"
/note="PFAM: protein of unknown function DUF1700;
KEGG: gdi:GDI1977 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274616.1"
/db_xref="GI:209542387"
/db_xref="InterPro:IPR012963"
/db_xref="GeneID:6973595"
/translation="MNERQTFLRRLKAGLKGMPRPAIDDIMADYEGHFDAGLAAGRSE
ADVAAALGNPSRLARELRAEAGLRRWEDERSLASALGVIVGVLGLAALDLFIVLPLLV
AAVTTVFSFFIAGVGICLGGSLALPFAIITNFPGFAGDRLQAVLLSMGLLSGGASLVA
FCILFTIGLVNVLARYGRAHYRLIAADA"
misc_feature complement(<217576..217974)
/locus_tag="Gdia_0203"
/note="Protein of unknown function (DUF1700); Region:
DUF1700; cl01933"
/db_xref="CDD:154660"
gene complement(217971..218306)
/locus_tag="Gdia_0204"
/db_xref="GeneID:6973596"
CDS complement(217971..218306)
/locus_tag="Gdia_0204"
/note="PFAM: transcriptional regulator PadR family
protein;
KEGG: gdi:GDI1978 putative transcriptional regulator,
PadR-like family"
/codon_start=1
/transl_table=11
/product="PadR-like family transcriptional regulator"
/protein_id="YP_002274617.1"
/db_xref="GI:209542388"
/db_xref="InterPro:IPR005149"
/db_xref="GeneID:6973596"
/translation="MDPNLVQFKKGVLELCVLALLSRADSYGYDIASRLSDAIDMGEG
TIYPLMRRMQKDGLVSTYLVESSSGPPRKYYRLTEGGRKNLDAQKAAWNDFTRSVAAV
LEQDQEKTP"
misc_feature complement(<217986..218288)
/locus_tag="Gdia_0204"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1695"
/db_xref="CDD:31881"
gene 218793..219596
/locus_tag="Gdia_0205"
/db_xref="GeneID:6973597"
CDS 218793..219596
/locus_tag="Gdia_0205"
/note="KEGG: gdi:GDI1981 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274618.1"
/db_xref="GI:209542389"
/db_xref="GeneID:6973597"
/translation="MHFISGLPRSGSTLLAAILRQNPRFTASMSSPVCGLVRKLLDGM
SANNEFASFITDEQRRRILRGVFENYYGDDFTSRTVFDTNRAWSNCLPLLGDLFPGCR
VIACVRDVPWILDSIERLVRRNCLAASGMFNFDSAGSVYTRAEAVARADGMLGYGYNA
LKEAFYGEQTDRLMLVRYETLVQDPRRVLSAVYDFIGETNFAHDLKNIRFDAEAFDRR
MGTPGLHQIRPAIGWQPRRNLLPPNLIARFADDAFWNHPNANPNGVRVI"
misc_feature 218799..>219383
/locus_tag="Gdia_0205"
/note="Sulfotransferase domain; Region: Sulfotransfer_1;
pfam00685"
/db_xref="CDD:201393"
gene 219752..223609
/locus_tag="Gdia_0206"
/db_xref="GeneID:6973598"
CDS 219752..223609
/locus_tag="Gdia_0206"
/note="TIGRFAM: outer membrane autotransporter barrel
domain protein; autotransporter-associated beta strand
repeat protein;
PFAM: Autotransporter beta- domain protein;
KEGG: gdi:GDI1982 hypothetical protein"
/codon_start=1
/transl_table=11
/product="outer membrane autotransporter barrel
domain-containing protein"
/protein_id="YP_002274619.1"
/db_xref="GI:209542390"
/db_xref="InterPro:IPR005546"
/db_xref="InterPro:IPR006315"
/db_xref="InterPro:IPR013425"
/db_xref="GeneID:6973598"
/translation="MRVSVSSLAILCALRLALPHQASAQTVVVTSPLTGASNFNAGGA
DGTSGAGGTGTGVGGGTGGSSSGNNAAGGSVGGSSAGYGGTGFGGGGGGGAGGQIGNQ
GNGAGGGGGLDGSVSNGSAGGGAGGGVGTTVTAGSWTNNSSVSGAYGGNGGNGAPVMN
SGGGGGGGAGVYASGSGSGSVTLINNAGAAIRGGFGGEYAGFGVNTTGIGGGGGGGTG
VAGSNFTLTNAGTIAGGGGGYGYTGGSGGNGVGGTNFNLSNSGNVTGGNGYNGSLGGT
GVAGSGFTLTNSGTIAGGLGGGSGGSGVAGSGFTLTNSGTITGGNGNYFTPTPTGGNG
GTGVTGSGFSLTNTATVTGGNGSSGFDFDSGNGGNGGSGVAGSSFTLANSGAITGGNG
GDGGDGGDGGDGGNDSYGQDSHNSNGNGGHGGGGVTGSGFTLTNTGTITGGDGGSGDG
DGKGIDGSGGVGVTSTGGSTIVTSGQISGGVSAAGVQADAVDLSGGGNTLKLESGYGF
TGNVVSTSGTTNGGDTLELGGTANGTFNLSQIVTTTPTSWTGTVQYSGFDRFLVTDSA
VWTLTGSTNAVSIAASMQINNGATLQFDNGAAGISLAGTFTDNGILTIGGSAAAASLA
GTGTANLAGILTLTNAADRFSGTIQGTGGLTIAGGNETLTGANTYSGGTTIEAGTLTV
GSNTALGTGVLDMAQGTALAFGTNGLTLGNAIVLNGDPTVEIDSGTDTLAGTISDGAT
PGDLVKTGAGTLVLAGNSTYSGGTEVAAGTLQVDGAIASPVTVDTAGTLAGAGTIGTT
TVSGTLAPGDAGVGTLHVNGNLTMAAGSTYQVDVTPAAALGHVAVTGAATLQGGTVAV
TAGAGNWTTTRYTILTAGGGVTGQFAGVLTNLAFLTPTLAYDSDDVFLSLRRNTLDFA
GVATTRNEVAAGNGLSGTTSGALYDALVQTDAATARHALNSLSGELHASARTALVQDS
YYVRDAAVERLRGVECAPGAASGMKTAAGGKPTDGACQPDRASVWMQDYGSFGHNGGN
GNAAGMGHSVGGFVLGADAPVLGWQVGGLVGYGHSSFDSGAVSSYGHSSNVSLGLYAG
THWGRLALRTGATYSWNMLSTTRNVGFTGFSNRLNTDYDGGTAQAFGDLGYRLDAGPA
MIEPFANVAYVNLHTNGYIEHGGPAALAGRAMDTGVTYSTFGARFAGTVRVGGVALTP
NATLGYRHAFGLTTPTTREAFLAGGNAFDVAGVPLSTDAAVLKAGLQAKLTDRLNVGL
SYVGQYGDHSTDSGLTGNVKVTF"
sig_peptide 219752..219826
/locus_tag="Gdia_0206"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 1.000 at
residue 25"
misc_feature 221687..223606
/locus_tag="Gdia_0206"
/note="Uncharacterized protein with a C-terminal OMP
(outer membrane protein) domain [Function unknown];
Region: COG4625"
/db_xref="CDD:34245"
misc_feature 221708..221800
/locus_tag="Gdia_0206"
/note="Autotransporter-associated beta strand repeat;
Region: Autotrns_rpt; pfam12951"
/db_xref="CDD:205158"
misc_feature 221981..222073
/locus_tag="Gdia_0206"
/note="Autotransporter-associated beta strand repeat;
Region: Autotrns_rpt; pfam12951"
/db_xref="CDD:205158"
misc_feature 222866..223576
/locus_tag="Gdia_0206"
/note="Autotransporter beta-domain; Region:
Autotransporter; smart00869"
/db_xref="CDD:197937"
gene complement(223623..224417)
/locus_tag="Gdia_0207"
/pseudo
/db_xref="GeneID:6973599"
gene complement(224428..225093)
/locus_tag="Gdia_0208"
/db_xref="GeneID:6973600"
CDS complement(224428..225093)
/locus_tag="Gdia_0208"
/note="PFAM: DNA repair protein RadC;
KEGG: gdi:GDI1985 putative DNA repair protein RadC"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadC"
/protein_id="YP_002274620.1"
/db_xref="GI:209542391"
/db_xref="InterPro:IPR001405"
/db_xref="GeneID:6973600"
/translation="MNLPPTDRAGAPGGSPHDAADDTALLASILALALPPGADPADAA
RALLARFGTIGAVFAADPAELASAVAGRLQIRVIVPLLREAAIRLMRARIRQGDLLSC
HDALMAYLQASLARDTVEQFRVLFLDRGTRLIADEVLAQGTIDQTPVYPREVMRRAIQ
LKASELILVHNHPGWNPTPSREDIAMTRRLAQIATVLGLTVRDHVIVGNGASISFRQA
GLL"
misc_feature complement(224446..224772)
/locus_tag="Gdia_0208"
/note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466;
cd08071"
/db_xref="CDD:163702"
misc_feature complement(order(224545..224547,224554..224556,
224578..224580,224584..224586,224734..224736))
/locus_tag="Gdia_0208"
/note="MPN+ (JAMM) motif; other site"
/db_xref="CDD:163702"
misc_feature complement(order(224545..224547,224578..224580,
224584..224586))
/locus_tag="Gdia_0208"
/note="Zinc-binding site [ion binding]; other site"
/db_xref="CDD:163702"
gene 225201..225908
/locus_tag="Gdia_0209"
/db_xref="GeneID:6973601"
CDS 225201..225908
/locus_tag="Gdia_0209"
/note="PFAM: Haloacid dehalogenase domain protein
hydrolase;
KEGG: gdi:GDI1986 putative phosphoglycolate phosphatase"
/codon_start=1
/transl_table=11
/product="Haloacid dehalogenase domain-containing protein"
/protein_id="YP_002274621.1"
/db_xref="GI:209542392"
/db_xref="InterPro:IPR005834"
/db_xref="GeneID:6973601"
/translation="MNVLSSLNRHDAVLLDLDGTIVDSRAGIIGSLHDSLRDLGHEPD
PEEDLTWVVGPPLHDLVARVLQHYGDDRAEEAVRLYRYHYERHGMHRSAVFAGMQDVI
ETVAASGARLFLATSKPVHLARAILDLRGLTKYFTALYGARPDDSGAEKPELIGQLLR
EHAIATGRAVMVGDRRYDISGAHANHVRALGALWGYGGEEELTEAGADALVADPGELL
AAIRSQLAAAHLHPAAE"
misc_feature <225201..225506
/locus_tag="Gdia_0209"
/note="Tubulin/FtsZ: Family includes tubulin alpha-,
beta-, gamma-, delta-, and epsilon-tubulins as well as
FtsZ, all of which are involved in polymer formation.
Tubulin is the major component of microtubules, but also
exists as a heterodimer and as a curved...; Region:
Tubulin_FtsZ; cl10017"
/db_xref="CDD:198981"
misc_feature 225225..225863
/locus_tag="Gdia_0209"
/note="Predicted phosphatases [General function prediction
only]; Region: Gph; COG0546"
/db_xref="CDD:30892"
misc_feature 225435..225755
/locus_tag="Gdia_0209"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 225546..225548
/locus_tag="Gdia_0209"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(225917..226651)
/locus_tag="Gdia_0210"
/db_xref="GeneID:6973602"
CDS complement(225917..226651)
/locus_tag="Gdia_0210"
/note="PFAM: DNA repair protein RadC;
KEGG: gdi:GDI1987 putative DNA repair protein RadC"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadC"
/protein_id="YP_002274622.1"
/db_xref="GI:209542393"
/db_xref="InterPro:IPR001405"
/db_xref="GeneID:6973602"
/translation="MTRTGGDGGKAPRQSAPFKETGPTGHRARMRARVLASGAGSLAD
YEIIEMLLFSGVPRRDTKPMAKALLNRFGSLGALLSAPADALRAAGLSDRVALPLMLP
ASVAERLSRPDPLTRTPMRDWDAVLAYCDTVLTGAPPGQLRILFLDSSNHIIADEALD
AALDTGELDLVQRHILLRALDLHATAFVGIRIAPVWPPPATLVERDAVLMQAISYHAQ
NLSLTVQDHLILHHGQWLSLRQQRRL"
misc_feature complement(225920..226576)
/locus_tag="Gdia_0210"
/note="DNA repair proteins [DNA replication,
recombination, and repair]; Region: RadC; COG2003"
/db_xref="CDD:32186"
misc_feature complement(225929..226297)
/locus_tag="Gdia_0210"
/note="RadC-like JAB domain; Region: RadC; pfam04002"
/db_xref="CDD:190827"
gene 226699..228981
/locus_tag="Gdia_0211"
/db_xref="GeneID:6973603"
CDS 226699..228981
/locus_tag="Gdia_0211"
/note="PFAM: UvrD/REP helicase;
KEGG: gdi:GDI1988 putative DNA helicase II"
/codon_start=1
/transl_table=11
/product="UvrD/REP helicase"
/protein_id="YP_002274623.1"
/db_xref="GI:209542394"
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR002110"
/db_xref="InterPro:IPR014016"
/db_xref="InterPro:IPR014017"
/db_xref="GeneID:6973603"
/translation="MRAHKLGHNLRTPYTEIVTQTPAPFPERPAADRPDYLQRLNPEQ
RAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTNKAAREMRE
RIGALLGEPVEGLWLGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQVIEPL
RIDTKRWPPQGILGVIQRWKDRGLTPERVTPAEDCDFAGGQCRPIYAAYQARLVQLNA
CDFGDLMLHVTEILRTRPDVLAQYHRLFRYILVDEYQDTNTIQYLWLRLLAQREGQPA
NICCVGDDDQSIYSWRGAEVENILRFERDFPGAAVVRLERNYRSTAQILGAASGLIAH
NDGRLGKTLRPGREDASGEKVRVASVWDSDDEARLVGEEVERLRAGGHSLAEIAILVR
AGFQTRAFEERLITLGLPYRVVGGLRFYERSEIRDAMAYMRVLNQPADDLAFERIINV
PRRGIGAAAMQKFHVAAREGQMPLAAAVMDLIARGALKGRAREQMTALMACLARGREA
LPREGHVVVVETLLEESGYIDMWKADTSPEAPGRLDNLKELVRALADFESLGGFLEHV
ALVMENEENAGAERLSIMTLHGAKGLEFDTVFLPGWEEGVFPSQRTLDEGGLKGLEEE
RRLAYVGITRARHRAVISHAASRRIYGNWQSAIPSRFIEELPAEHVTTTGGAAQARSR
TFGHAPLSSTAFPVMARRPRVTDVGEKGPTAAMAVGTRVFHQKFGYGTISSVEGNRLE
VAFEKAGPKRVLDTFVEKIP"
misc_feature 226807..228963
/locus_tag="Gdia_0211"
/note="ATP-dependent DNA helicase PcrA; Region: pcrA;
TIGR01073"
/db_xref="CDD:162191"
misc_feature 226837..227070
/locus_tag="Gdia_0211"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature <228445..228621
/locus_tag="Gdia_0211"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene 228978..229883
/locus_tag="Gdia_0212"
/db_xref="GeneID:6973604"
CDS 228978..229883
/locus_tag="Gdia_0212"
/note="PFAM: ribosomal L11 methyltransferase;
KEGG: gdi:GDI1989 putative ribosomal protein L11
methyltransferase"
/codon_start=1
/transl_table=11
/product="ribosomal L11 methyltransferase"
/protein_id="YP_002274624.1"
/db_xref="GI:209542395"
/db_xref="InterPro:IPR010456"
/db_xref="GeneID:6973604"
/translation="MTSLTRRHATELETIAVTVPAEAVMAYEDALSVVCTTIGIFELD
DSQILWRVEGVRDVGYGDSELTGALALAATVTGHAAELERVRTEAEGWLARTYDSFPE
QTVGRRFVVRGTHLDAPAASRRIAITLDAGMAFGSGEHGSTRGCLRALESVAHRRPQR
ILDMGCGSGILAMAAAALLHRPVLAVDIEPWSVRTTAQNAALNGLSGLVTARLGNGWR
TPGLKRYAPFDLVFANILARPLCMMARDLALNLAPGGTAILAGLLNSQAGMVLAAHRR
QGLVLERRLTEGDWTTLVLRKRTTT"
misc_feature 229443..229859
/locus_tag="Gdia_0212"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature 229455..229742
/locus_tag="Gdia_0212"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(229467..229487,229536..229541,229617..229622,
229626..229628,229677..229679)
/locus_tag="Gdia_0212"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 229880..231670
/locus_tag="Gdia_0213"
/db_xref="GeneID:6973605"
CDS 229880..231670
/locus_tag="Gdia_0213"
/note="PFAM: peptidase M24;
KEGG: gdi:GDI1990 peptidase M24"
/codon_start=1
/transl_table=11
/product="peptidase M24"
/protein_id="YP_002274625.1"
/db_xref="GI:209542396"
/db_xref="InterPro:IPR000994"
/db_xref="GeneID:6973605"
/translation="MTAIASRLPALRTVLGQMDVDGFILLRGDEHLGEYVAPCAERLA
WLTGFTGSAGMAVVLRDGPAAVFSDGRYVTQMDQQVDGAAWSRLHLRDTPPARWLASH
AGAGQRIGYDPRLVGEAGLQPFLDCGLTMVPMAANPVDRIWTDRPAAPATACMPQPLA
FAGEDSAAKRARMAAILKADGQDAAVLGDPTAIAWLLNVRGHDVQYTPVCLAFAILHD
DARVDLFIDPARLPQDTAAWLGPEVTIVEPAGLEAALAALAGRRVRVDPVGTAIWFIQ
TLEAAGATVARGGDPCVLPRARKNDVEQDGARRAHLLDGIALCRFLHWMDTEGVGPDS
IRPGELDAANRLDAFRALCPDYREESFPAISGAGPNGAVIHYRVTPESSRTIGTDEVY
LIDSGGQYPFGTTDVTRTIWTGAGRGPEDVRHAFTRVLKGHIALARARFPVGTTGHAL
DGLARYALWQAGMDYDHGTGHGIGSYLSVHEGPCSISPVYRPVAVEAGMILSDEPGYY
RPGAFGIRLENLLLARPAPAEPNRSFLEFETLTLAPFDRRLIDASLLTAEETAWIDAY
HARVCETLAPHLEAAPTAWLHAACAPIGAE"
misc_feature 229898..>230227
/locus_tag="Gdia_0213"
/note="Creatinase/Prolidase N-terminal domain; Region:
Creatinase_N; pfam01321"
/db_xref="CDD:201727"
misc_feature 230351..231529
/locus_tag="Gdia_0213"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:30356"
misc_feature 230795..231472
/locus_tag="Gdia_0213"
/note="X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also
known as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid, including
proline, that is linked with proline; Region: APP;
cd01085"
/db_xref="CDD:29970"
misc_feature order(231002..231004,231062..231064,231095..231097,
231302..231304,231389..231391,231431..231433)
/locus_tag="Gdia_0213"
/note="active site"
/db_xref="CDD:29970"
gene 231910..232938
/locus_tag="Gdia_0214"
/db_xref="GeneID:6973606"
CDS 231910..232938
/locus_tag="Gdia_0214"
/EC_number="1.1.1.41"
/note="PFAM: isocitrate/isopropylmalate dehydrogenase;
KEGG: gdi:GDI1991 isocitrate dehydrogenase"
/codon_start=1
/transl_table=11
/product="isocitrate dehydrogenase"
/protein_id="YP_002274626.1"
/db_xref="GI:209542397"
/db_xref="InterPro:IPR001804"
/db_xref="GeneID:6973606"
/translation="MSAEKTIPATLIPGDGIGPEITESVTEILAAVGAPFDWDNQLAG
MAAVDATGNPLPPQTIASIHRTGLALKGPLTTPVGGGFKSINVTLRQEFGLFANLRPT
HTIVPGGRFDKIDLVLVRENLEGYYAAMESYIPVGDDPHGIATGAGYNSRAECNRIVR
FAFEYAVKNNRKKVTLVHKANILKLLTGLFLEEGRKVAKEYEGRVECNERIVDACAMQ
LVIDPWQFDVIVTTNLFGDILSDLTAGLVGGLGLAPGANIGEKAAVFEAVHGSAPDIA
GKNVANPLALLMAANMMLKHVGRADLATRIESAIQSVITEGTVRTRDLGGTAGTRELT
AALKQKLV"
misc_feature 231916..232932
/locus_tag="Gdia_0214"
/note="Isocitrate/isopropylmalate dehydrogenase; Region:
Iso_dh; cl00445"
/db_xref="CDD:212218"
misc_feature 231943..232932
/locus_tag="Gdia_0214"
/note="isocitrate dehydrogenase; Validated; Region:
PRK06451"
/db_xref="CDD:180566"
gene complement(232980..233858)
/locus_tag="Gdia_0215"
/db_xref="GeneID:6973607"
CDS complement(232980..233858)
/locus_tag="Gdia_0215"
/note="TIGRFAM: hydroxyisourate hydrolase; OHCU
decarboxylase;
PFAM: Transthyretin;
KEGG: gdi:GDI1992 hypothetical protein"
/codon_start=1
/transl_table=11
/product="OHCU decarboxylase"
/protein_id="YP_002274627.1"
/db_xref="GI:209542398"
/db_xref="InterPro:IPR000895"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR014306"
/db_xref="InterPro:IPR017580"
/db_xref="GeneID:6973607"
/translation="MTIGIMDRVNRLDPADFVALFGALYEHSPWVAARAASLRPFPDP
DAMLAAMNQVLDRATDAEKLALVRAHPELARRAGVDPTLTQASAAEQASAGLDRLSPE
EYARFNRLNDAYAARFAMPFVICVRLSDKDFILSEMERRVVHTPEQEVRTAIVEIGKI
ARLRLADALARLEKEAVITLSSHVLDLVSGRPAAGMDITLWSGATRLFSGRTNGDGRC
PDLAGIGALAPGAYRLEFGVAAYFRGQGVALSDPPFLDIVPIAFGIAPPVDGKGGHYH
VPLLVSPYGFSTYRGS"
misc_feature complement(233379..233834)
/locus_tag="Gdia_0215"
/note="OHCU decarboxylase; Region: OHCU_decarbox;
pfam09349"
/db_xref="CDD:204206"
misc_feature complement(232983..233324)
/locus_tag="Gdia_0215"
/note="HIUase (5-hydroxyisourate hydrolase) catalyzes the
second step in a three-step ureide pathway in which
5-hydroxyisourate (HIU), a product of the uricase (urate
oxidase) reaction, is hydrolyzed to
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU);
Region: TLP_HIUase; cd05822"
/db_xref="CDD:100114"
misc_feature complement(order(232992..232994,233019..233021,
233025..233027,233031..233033,233208..233210,
233304..233306,233310..233312))
/locus_tag="Gdia_0215"
/note="active site"
/db_xref="CDD:100114"
misc_feature complement(order(232989..233009,233013..233015,
233070..233078,233088..233090,233094..233099,
233289..233300))
/locus_tag="Gdia_0215"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:100114"
gene complement(233855..234760)
/locus_tag="Gdia_0216"
/db_xref="GeneID:6973608"
CDS complement(233855..234760)
/locus_tag="Gdia_0216"
/EC_number="3.5.1.41"
/note="KEGG: gdi:GDI1993 putative polysaccharide
deacetylase;
TIGRFAM: urate catabolism protein;
PFAM: polysaccharide deacetylase"
/codon_start=1
/transl_table=11
/product="urate catabolism protein"
/protein_id="YP_002274628.1"
/db_xref="GI:209542399"
/db_xref="InterPro:IPR002509"
/db_xref="InterPro:IPR017625"
/db_xref="GeneID:6973608"
/translation="MTDPYPRDLVGYAGHPPDPRWPGQARVAVQFVINYEEGGENSVL
HGDAGSEAFLSEMIGARSVPGARAMAMESLYEYGSRAGFWRLHRLFTERSLPVTVFGV
AAAMARNPDAVAAMLGAGWDIATHGLRWIDYQDIPEDVERAHIRDCIALHTALTGSRP
VGWYQGRTSPNTARLVAEEGGFAYDADSYADDLPYYDRRYGRPQLIVPYTLDANDMRF
VALNGFTEGEQFFRYLRDTFDALYEEGESAPKMMSVGLHCRVAGRPGRARAVARFLDH
VMAHDRVWVATRLDIARHWLEVHPA"
misc_feature complement(233858..234748)
/locus_tag="Gdia_0216"
/note="putative urate catabolism protein; Region:
uraD_N-term-dom; TIGR03212"
/db_xref="CDD:211797"
misc_feature complement(233879..234700)
/locus_tag="Gdia_0216"
/note="Catalytic domain of bacterial PuuE allantoinases,
Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1),
and similar proteins; Region: CE4_PuuE_SpCDA1; cd10977"
/db_xref="CDD:200599"
misc_feature complement(order(233990..233992,234260..234268,
234371..234373,234383..234385,234602..234604,
234653..234655,234659..234661))
/locus_tag="Gdia_0216"
/note="active site"
/db_xref="CDD:200599"
misc_feature complement(order(233990..233992,234653..234655))
/locus_tag="Gdia_0216"
/note="catalytic site [active]"
/db_xref="CDD:200599"
misc_feature complement(order(233957..233959,233963..233971,
234029..234031,234038..234043,234050..234055,
234062..234067,234074..234076,234083..234097,
234107..234112,234125..234130,234176..234178,
234185..234199,234251..234259,234263..234265,
234356..234361,234434..234439,234497..234499,
234506..234511,234518..234526,234530..234547,
234551..234556,234560..234565,234587..234595,
234626..234631,234641..234643,234647..234649))
/locus_tag="Gdia_0216"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:200599"
gene complement(234757..236004)
/locus_tag="Gdia_0217"
/db_xref="GeneID:6973609"
CDS complement(234757..236004)
/locus_tag="Gdia_0217"
/EC_number="2.6.1.51"
/note="PFAM: aminotransferase class V;
KEGG: gdi:GDI1994 putative serine-pyruvate
aminotransferase"
/codon_start=1
/transl_table=11
/product="serine--pyruvate transaminase"
/protein_id="YP_002274629.1"
/db_xref="GI:209542400"
/db_xref="InterPro:IPR000192"
/db_xref="GeneID:6973609"
/translation="MFGQIDPPQRLLMGPGPVNVHPRVLRAMTADMLGQFDPEMTGYM
NQTMALYRQVFMTENRWTFLVDGTARAGIEAALVSLVEPGARLLILRAGRFGLLLSEI
AQRIGAEIRTIDIPWGEVATPEQIEAAIIEHRPQVFATIHGDTSTTMAQPLDGVGAIC
RRHGVLSYVDATATLGGMAVATDAWGVDVVTGGLQKCMGGPPGSAPITISDRAAAHIM
ARRHVEAGIRGADAQDGSRTRIGSNYFDLAMIMEYWSEKRLNHHTEATSMLYAAREAA
RIMVEEGLEARFARHRAASEAMAAGLRAMGLTLYGQDAYRMANVTGVFIPDGVDGERA
RTRMRDEFEIEIGTAFGPLAGRIWRIGAMGYNAMKHKVLITLGALEAVLAAEGHALPR
GAGVDAARASYEAMPGAAPGAAS"
misc_feature complement(234790..235986)
/locus_tag="Gdia_0217"
/note="Serine-pyruvate aminotransferase/archaeal aspartate
aminotransferase [Amino acid transport and metabolism];
Region: COG0075"
/db_xref="CDD:30424"
misc_feature complement(234910..235974)
/locus_tag="Gdia_0217"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature complement(order(235417..235419,235426..235428,
235486..235488,235495..235497,235582..235584,
235786..235788,235795..235800))
/locus_tag="Gdia_0217"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature complement(235417..235419)
/locus_tag="Gdia_0217"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(236028..237317)
/locus_tag="Gdia_0218"
/db_xref="GeneID:6973610"
CDS complement(236028..237317)
/locus_tag="Gdia_0218"
/EC_number="3.5.1.87"
/note="allantoate amidohydrolase and N-carbamoyl-L-amino
acid amidohydrolase are very similar; the allantoate
amidohydrolase from Escherichia coli forms a dimer and
binds zinc ions for catalytic activity and catalyzes the
conversion of allantoate to (S)-ureidoglycolate and
ammonia; carbamoyl amidohydrolase from Bacillus sp.
converts N-carbamoyl amino acids to amino acids, ammonia,
and carbon dioxide"
/codon_start=1
/transl_table=11
/product="allantoate amidohydrolase"
/protein_id="YP_002274630.1"
/db_xref="GI:209542401"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR010158"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:6973610"
/translation="MVIPPMRETASGIRAVVRCDELGTAPYSDDPAGLFRPYLGAGHA
ATLDRIAAWMTEAGMTARIDAAGNILGRYEGQSPDAPALMIGSHVDSVRDAGRYDGML
GVMLGIEAVAWFAERRRRFPFAIEVIGFGDEEGSRFPVSMLATRAVAGTLAGQDLDLL
DADGTSLATALEIFGLDVARLDHAARPREDVLAYVEAHIEQGPVLEAEDRALGVVSAI
AAQFRFRATVCGVAGHAGTMAMRLRRDALAAAAEMVLAIERIGGAGTDDLVATVGRME
VRPGVPNVVPGAVEFSIDIRAGTGAVRDRAAEAVRAALAGIAGARQVTLDLELQQDLK
ATPCDPGLTRLMEQAVQHAMGIAPRTLVSGAGHDAMVMAGLAPMSMLFIRCAGGISHN
PAEAVRVEDADLALRAMTDFIERFDARAAASAQQGTQ"
misc_feature complement(236058..237293)
/locus_tag="Gdia_0218"
/note="allantoate amidohydrolase; Reviewed; Region:
PRK09290"
/db_xref="CDD:181761"
misc_feature complement(236076..237266)
/locus_tag="Gdia_0218"
/note="M20 Peptidase beta-alanine synthase, an
amidohydrolase; Region: M20_bAS; cd03884"
/db_xref="CDD:193505"
misc_feature complement(order(236145..236147,236220..236225,
236430..236432,236649..236651,236655..236657,
236715..236717,236724..236726,236895..236897,
236916..236921,237018..237023,237054..237056))
/locus_tag="Gdia_0218"
/note="active site"
/db_xref="CDD:193505"
misc_feature complement(order(236145..236147,236724..236726,
236916..236921,237021..237023,237054..237056))
/locus_tag="Gdia_0218"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193505"
misc_feature complement(order(236226..236228,236430..236432,
236436..236438,236460..236471,236475..236480,
236490..236513,236532..236537,236541..236546,
236550..236558,236562..236570,236574..236579,
236589..236591,236598..236600,236604..236618,
236649..236651,236694..236699,236706..236717))
/locus_tag="Gdia_0218"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193505"
gene complement(237311..238903)
/locus_tag="Gdia_0219"
/db_xref="GeneID:6973611"
CDS complement(237311..238903)
/locus_tag="Gdia_0219"
/EC_number="2.3.2.2"
/note="PFAM: gamma-glutamyltranspeptidase;
KEGG: gdi:GDI1996 putative gamma-glutamyltranspeptidase
precursor"
/codon_start=1
/transl_table=11
/product="gamma-glutamyltransferase"
/protein_id="YP_002274631.1"
/db_xref="GI:209542402"
/db_xref="InterPro:IPR000101"
/db_xref="GeneID:6973611"
/translation="MLHTPRSQRGMVTSPHHLASQAGLDVLRDGGTAIEAVVATAAAL
AVVYPHMTGIGGDGFWLVLWPDGRTETIDACGAAARRADLDFYRAAGRDAIPWRGPLA
ANTVAGTISGWDLALSWSHAQQPGLSLHRLLRDAIYYAEQGVPVTEGGAALTQAKMDE
LAGIPGFRDVFLPGGRAPRAGDMLHNPALSQTLRRLASDGLDSFYRGALARDMAQDLR
VLGSPLDLADLNTHQARARPPLHVDVTGARLFNMAPPTQGVASLLILAIFDRLRADQP
DGFDHVHGLVEATKQAFRYRDAHVGDPAFMSVDAQAVLDDTLALDGMALAIDPARAAP
WPHPSQAGDTVWMGAVDADGVAVSMIQSVYFEYGSGVVLPRTGVLWQNRGASFRLAED
GWNALRPGRKPFHTLNPAAARFDDGRTMVYGTMGGEGQPQTQAALFTRYARYGIGLQQ
AVTAPRWLLGRTWGEDSTTLKYEDRFAPEVIARLGEAGHVLEAMPAFTSTMGHAGALV
LHPSGLIEGATDPRSDGMVAAW"
misc_feature complement(237314..238888)
/locus_tag="Gdia_0219"
/note="Gamma-glutamyltransferase [Amino acid transport and
metabolism]; Region: Ggt; COG0405"
/db_xref="CDD:30754"
misc_feature complement(237329..238834)
/locus_tag="Gdia_0219"
/note="Gamma-glutamyltranspeptidase; Region:
G_glu_transpept; pfam01019"
/db_xref="CDD:201554"
gene complement(238907..240271)
/locus_tag="Gdia_0220"
/db_xref="GeneID:6973612"
CDS complement(238907..240271)
/locus_tag="Gdia_0220"
/note="TIGRFAM: amidohydrolase, AtzE family;
PFAM: Amidase;
KEGG: gdi:GDI1997 putative glutamyl-tRNA(Gln)
amidotransferase subunit A"
/codon_start=1
/transl_table=11
/product="amidohydrolase, AtzE family"
/protein_id="YP_002274632.1"
/db_xref="GI:209542403"
/db_xref="InterPro:IPR000120"
/db_xref="InterPro:IPR014087"
/db_xref="GeneID:6973612"
/translation="MSAPVAAGPADALAIAAEIRQGRRNAVSFVTAAIAAIEVRDTRV
NSVTRIFGPRAVAEAEKIDRRIAAGEDPGPLAGVPFGVKDLFDVEGEVTTAGSVVLRE
ARPAVQDATVIARLRAAGAIPLASLNMDEFAYGFATDNAHYGITRNPHDPARLAGGSS
GGSAAAVAAGFLPFTLGSDTNGSIRVPASLCGVWGLKPTFGTVPREGAYPFAASLDVV
GPFAGTLADLRVVHEAMNGAPMPAVPVLSDLRVARLGGWFAENVSAPLAAAIDAVAGH
LGHVPVVELPEVARARAASFLITAAEGGMLHLPRLRRRALQYDPATRDRLIAGALLPA
ATVLQAHRFRAWFREQIHAAFRTADVLIAPATVGEAPLIDQPTIVVDGQAVSARTNLG
LYTQPLSLAGVPILSVPLLGTGGLPLGLQLIAAPGGEPALFAVAAALEAAGVAGKVPL
PKGR"
misc_feature complement(238994..240220)
/locus_tag="Gdia_0220"
/note="amidase; Provisional; Region: PRK09201"
/db_xref="CDD:181695"
misc_feature complement(239045..240184)
/locus_tag="Gdia_0220"
/note="Amidase; Region: Amidase; pfam01425"
/db_xref="CDD:201788"
gene complement(240268..240489)
/locus_tag="Gdia_0221"
/db_xref="GeneID:6973613"
CDS complement(240268..240489)
/locus_tag="Gdia_0221"
/note="KEGG: gdi:GDI1998 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274633.1"
/db_xref="GI:209542404"
/db_xref="GeneID:6973613"
/translation="MTDNQGDAPPKSAPDTIPDAALVAATAREVGLTIADVCMPGVLA
NRALLRRYADLVHGFALPDTCEPAFEYRP"
misc_feature complement(240286..240423)
/locus_tag="Gdia_0221"
/note="Protein of unknown function (DUF4089); Region:
DUF4089; pfam13318"
/db_xref="CDD:205498"
gene complement(240553..242007)
/locus_tag="Gdia_0222"
/db_xref="GeneID:6973614"
CDS complement(240553..242007)
/locus_tag="Gdia_0222"
/note="KEGG: gdi:GDI1999 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274634.1"
/db_xref="GI:209542405"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:6973614"
/translation="MAADSSALPSEEGLAALTAAVRRDLAVIGYPRHDWTPNFSRNGE
PVLDVAIIGAGQGGLATAFALQRGNITNVRIFDRAARGGEGPWITYARMITLRTPKYV
TGPDLGIPNLTPRAWYEATYGVQAWEDLDKIPRGDWQAYLDWYRDTLGLPVENDRSFE
HVEWVDGLLRLTFRDAAGREYHHLARKLVLATGIEGNGAWNVPAFIRENLPRERFAHT
SEDIDFAALRGKRIGVLGAGASAFDNAATALEQGAASVALCLRRRVIPSVNPYRWMEN
TGFLAHFPSLPDTLRWQFMRHIYELNQPPPQDTFWRCRRHPTFSYHTGCGWTGAEMDG
DEVVVRTPDGEKRFDFVIIGTGFATDLNLRPELASFAGSVALWRDRFTPPDGEESALL
GAHAYLGDAYQFQPRDPRDPLATMLANIHNFTFGATPSMGLSGASISGMRFGVERLAR
GLGRDLFVADGAWHLDNLLSYVTPELVSLDPPDA"
misc_feature complement(240574..241875)
/locus_tag="Gdia_0222"
/note="Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism]; Region: TrkA;
COG2072"
/db_xref="CDD:32255"
misc_feature complement(241429..241860)
/locus_tag="Gdia_0222"
/note="FAD-NAD(P)-binding; Region: NAD_binding_9;
pfam13454"
/db_xref="CDD:205632"
gene complement(242199..243125)
/locus_tag="Gdia_0223"
/db_xref="GeneID:6973615"
CDS complement(242199..243125)
/locus_tag="Gdia_0223"
/note="PFAM: regulatory protein LysR; LysR
substrate-binding;
KEGG: gdi:GDI2000 putative transcriptional regulator, LysR
family"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002274635.1"
/db_xref="GI:209542406"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:6973615"
/translation="MRASGRTAHMLRLHARCIVYFNAVRDFGSIREAARRLNVTPSAL
TRQIAQMEDEIGSPLFDRLPGGMVLTAVGEIVARHIITVMQDAVRTDEQIAALAGMRG
GRVSLMAVEGVAGDLMARLLTRMTETCPDVQLQAETGSPAAIIAALSGGTTDLGIAFS
LDPPDELRRVAVANFPVGVIMPANHALAGQRRVRIEECIGHKLILPTRSLSLHRVMEP
MLRPWRDRLDVVLETGSIELTNRMVAAGAGLAFQSRLALEFDIQRGALVHVPLADPRA
VTDLGVYVRDARWLPPALERLIAEIRATLQAM"
misc_feature complement(242205..243080)
/locus_tag="Gdia_0223"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(242904..243074)
/locus_tag="Gdia_0223"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(242223..242816)
/locus_tag="Gdia_0223"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature complement(order(242391..242396,242400..242405,
242421..242438,242712..242732,242736..242738,
242748..242750,242757..242762,242766..242771))
/locus_tag="Gdia_0223"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene complement(243122..243985)
/locus_tag="Gdia_0224"
/db_xref="GeneID:6973616"
CDS complement(243122..243985)
/locus_tag="Gdia_0224"
/note="TIGRFAM: xanthine dehydrogenase accessory protein
XdhC;
PFAM: protein of unknown function DUF182;
KEGG: gdi:GDI2001 putative xanthine dehydrogenase
chaperone"
/codon_start=1
/transl_table=11
/product="xanthine dehydrogenase accessory protein XdhC"
/protein_id="YP_002274636.1"
/db_xref="GI:209542407"
/db_xref="InterPro:IPR003777"
/db_xref="InterPro:IPR014308"
/db_xref="GeneID:6973616"
/translation="MDEILAALDLWRPAGQPIARIAIRAARGSTPREAGSFMLVTPDA
QAGTIGGGHLEWDSVIRARALLAGQGQAGEHDVPLGPEIGQCCGGVVRVRIERADDAL
LDALVRDGLAARAARPVLLLFGAGHVGRALARALAPLPLRLVWIDPRAAEFGTVPDSV
EIRVTADWESAIAAAPPGAGALVLTPSHALDALIVGAALERGDFRYVGLIGSKTKRRR
FEAGFRSLGLGEDRIETLVCPIGDRGIRDKRPEIIAALVAAEIVERLLHDNAGMEESN
GAEGIGMRYTA"
misc_feature complement(<243815..243955)
/locus_tag="Gdia_0224"
/note="XdhC and CoxI family; Region: XdhC_CoxI; pfam02625"
/db_xref="CDD:202317"
misc_feature complement(243236..243904)
/locus_tag="Gdia_0224"
/note="xanthine dehydrogenase accessory protein XdhC;
Region: xanthine_xdhC; TIGR02964"
/db_xref="CDD:163088"
misc_feature complement(243236..243619)
/locus_tag="Gdia_0224"
/note="XdhC Rossmann domain; Region: XdhC_C; pfam13478"
/db_xref="CDD:205656"
gene complement(243997..246378)
/locus_tag="Gdia_0225"
/db_xref="GeneID:6973617"
CDS complement(243997..246378)
/locus_tag="Gdia_0225"
/EC_number="1.17.1.4"
/note="KEGG: gdi:GDI2002 putative xanthine
dehydrogenase/oxidase;
TIGRFAM: xanthine dehydrogenase, molybdopterin binding
subunit;
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b
hammerhead; aldehyde oxidase and xanthine dehydrogenase
molybdopterin binding"
/codon_start=1
/transl_table=11
/product="xanthine dehydrogenase, molybdopterin-binding
subunit"
/protein_id="YP_002274637.1"
/db_xref="GI:209542408"
/db_xref="InterPro:IPR000674"
/db_xref="InterPro:IPR008274"
/db_xref="InterPro:IPR014309"
/db_xref="GeneID:6973617"
/translation="MRDTISAPISGALPDAVPGTVVTGGASHSLRHESAAMHVAGAAA
YIDDMPEPKGLLHVVPGLSTRAHARIVSMDLDAVRAAPGVVRVLTAADIPGHNQVSPV
GRNDEPLLATDLVSYYGQPIFAVVAETRLQARHAARLARIEYEDLPAILDIAQARAAG
GAMVWRPLTMQRGDAPSGLAASPRRVAGRITMGGQEHFYLEGQAAMAQPGEEGEMRVW
SSTQHPTETQHMVAHVLDRPSNLVTTEIRRMGGGFGGKETQANTPACLAALAAELTGR
AAKIRLDRDDDMMMTGKRHDFVVDYDVGFDDDGRIRAVDMVLAARCGWSADLSGPVTD
RALFHADNAYYYPDVRLRSEPLKTNTQSNTAYRGFGGPQGIVAAERVIEEIAFATGLD
PLDVRLRNVYGTGTRDLTPYHMTVEDSISADIMAKLADDCAYRARRAALRAANEGSPH
IRRGIALTPVKFGISFTATHYNQAGALVHVYTDGSVQVNHGGTEMGQGLHTKMVQIAM
REFGLPADRVRITATTTGKVPNTSATAASSGADLNGMAVLDAVRRIKDRLVEFAAGHW
GVDAAQVRFLPDGVHVGATVVPFPDLTRAAYFARVSMSSSGFYKTPKISWNAETGRGR
PFFYFAYGAACAEVAIDLLTGETRIEQVDILHDAGQSLNPAIDIGQIEGGFVQGAGWL
TTEELVWDASGRLRTHAPSTYKVPACSDRPRRFTVKLLDHAPNREDTIFRSKAVGEPP
FVHGVAVLHAISDALASIDGYRTCPRLDAPATPETILRTTERMRGLAAPCPVG"
misc_feature complement(244027..246294)
/locus_tag="Gdia_0225"
/note="xanthine dehydrogenase, molybdopterin binding
subunit; Region: xanthine_xdhB; TIGR02965"
/db_xref="CDD:200222"
misc_feature complement(245935..246258)
/locus_tag="Gdia_0225"
/note="Aldehyde oxidase and xanthine dehydrogenase, a/b
hammerhead domain; Region: Ald_Xan_dh_C; smart01008"
/db_xref="CDD:198076"
misc_feature complement(244243..245883)
/locus_tag="Gdia_0225"
/note="Molybdopterin-binding domain of aldehyde
dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738"
/db_xref="CDD:202368"
gene complement(246371..247864)
/locus_tag="Gdia_0226"
/db_xref="GeneID:6973618"
CDS complement(246371..247864)
/locus_tag="Gdia_0226"
/note="TIGRFAM: xanthine dehydrogenase, small subunit;
PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding;
[2Fe-2S]-binding domain protein; CO dehydrogenase
flavoprotein domain protein;
KEGG: gdi:GDI2003 putative xanthine dehydrogenase, XdhA"
/codon_start=1
/transl_table=11
/product="xanthine dehydrogenase small subunit"
/protein_id="YP_002274638.1"
/db_xref="GI:209542409"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR002346"
/db_xref="InterPro:IPR002888"
/db_xref="InterPro:IPR005107"
/db_xref="InterPro:IPR006058"
/db_xref="InterPro:IPR014307"
/db_xref="GeneID:6973618"
/translation="MRDHIRFYLGDTLYDLSGFSPTLTVLDWLREQRGRTGTKEGCNE
GDCGACTVLVARLDGGPPDAPRLAWRAVNACIQFVSMLDGAQLFTVEDLRASDGTLHP
VQQAMVDLHGSQCGFCTPGFVMSMVAYRKQPGAVAEDGPIDDALAGNLCRCTGYAPIV
RAMKQAMAAGSDRFDAQAAAIADRLSALRDGQTVHVSGPAGRLTIPADADALAATLLA
DPEATIVAGATDVGLWVTKGLRTLPHVVAIGQVPDLKRLDRTADGLRIGAAVTYEDAR
DALAGLLPDAGEIVRRIGSTQVRNAGTVCGNIANGSPIGDGPPVFIAAGATLHLRRGD
VRRNMPLEDYFLAYGQQDRQPGEFVEGVTIPALRQGQVFRAYKVSKRFDQDISALLGA
FALTLDDAGTITDARIAFGGMAATPKRARATEEALRGHPWSEATLQAARAAIATDFAP
ISDMRASDWYRRTVAANLLTRLFAETAPGARRPETRLAGRSEAAIHA"
misc_feature complement(246437..247852)
/locus_tag="Gdia_0226"
/note="xanthine dehydrogenase, small subunit; Region:
xanthine_xdhA; TIGR02963"
/db_xref="CDD:163087"
misc_feature complement(247373..247600)
/locus_tag="Gdia_0226"
/note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799"
/db_xref="CDD:201981"
misc_feature complement(246437..246745)
/locus_tag="Gdia_0226"
/note="CO dehydrogenase flavoprotein C-terminal domain;
Region: CO_deh_flav_C; pfam03450"
/db_xref="CDD:202637"
gene complement(248002..249429)
/locus_tag="Gdia_0227"
/db_xref="GeneID:6973619"
CDS complement(248002..249429)
/locus_tag="Gdia_0227"
/EC_number="3.5.2.2"
/note="catalyzes the hydrolytic cleavage of hydantoin with
aromatic side chains at the 5'position"
/codon_start=1
/transl_table=11
/product="phenylhydantoinase"
/protein_id="YP_002274639.1"
/db_xref="GI:209542410"
/db_xref="InterPro:IPR005847"
/db_xref="InterPro:IPR006680"
/db_xref="InterPro:IPR011778"
/db_xref="InterPro:IPR013108"
/db_xref="GeneID:6973619"
/translation="MLLVRGGTVVTAEWSRRADVLCDDAGRIAAVGPALDVPVGCDVL
DAGGLLVMPGGIDPHTHMEMPFMGSVSSDDFQTGTAAGVAGGTTTIIDFVIPDPGTSL
LGAWKDWRAKAEKAVSDYSFHVAVTHWDQRVHDEMGILTRDCGVNSFKHFMAYKGALM
VDDGVLLRSIGRALELGALCNVHAENGDAVAYLQQDLLTRGVTGPAAHPRSRPPAVEG
EAAQRVIAIAGLLGAPVYIVHVSTEEAAAAIAAARARGQRVYGEVLAQHLVIDDGVYA
DPDWLGAARHVMSPPFRPKHHQHALWAGLASGQLQTTATDHCCFCAGQKQQGRDDFSQ
IPNGTPGIEDRMSVLWHHGVRTGRLTPEEFVAVTSANAAKIFNIHPRKGTVTPGADAD
LVLWDADSSRTVSAATHHQNVDYNVYEGMTLTGLARHTISGGRVVWSDGDLRTVRGAG
RYVERPCFAPDMAAQARRNAVAAGR"
misc_feature complement(248050..249429)
/locus_tag="Gdia_0227"
/note="phenylhydantoinase; Validated; Region: PRK08323"
/db_xref="CDD:181388"
misc_feature complement(248080..249426)
/locus_tag="Gdia_0227"
/note="D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins; DHPases
are a family of enzymes that catalyze the reversible
hydrolytic ring opening of the amide bond in five- or
six-membered cyclic diamides, like dihydropyrimidine...;
Region: D-HYD; cd01314"
/db_xref="CDD:30057"
misc_feature complement(order(248278..248280,248293..248295,
248308..248310,248659..248664,248668..248673,
248752..248754,248761..248763,248773..248775,
248785..248787,248854..248856,248863..248865,
248872..248874,248935..248937,249337..249342,
249382..249384,249388..249393))
/locus_tag="Gdia_0227"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:30057"
misc_feature complement(order(248482..248484,248713..248715,
248881..248883,248980..248982,249247..249249,
249253..249255))
/locus_tag="Gdia_0227"
/note="active site"
/db_xref="CDD:30057"
gene 249611..250879
/locus_tag="Gdia_0228"
/db_xref="GeneID:6973620"
CDS 249611..250879
/locus_tag="Gdia_0228"
/EC_number="3.5.1.87"
/note="KEGG: gdi:GDI2005 putative N-carbamoyl-L-amino acid
amidohydrolase;
TIGRFAM: amidase, hydantoinase/carbamoylase family;
PFAM: peptidase M20; peptidase dimerisation domain
protein"
/codon_start=1
/transl_table=11
/product="hydantoinase/carbamoylase family amidase"
/protein_id="YP_002274640.1"
/db_xref="GI:209542411"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR010158"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:6973620"
/translation="MSGTGGLRKGDNITVNGAALWDDILHTARFGGTPKGGIRRLTLT
EEDRLVRAWFEAACRQVGCTVTHDSLGNQFARRPGRDDSLPPITIGSHLDTQPTGGKF
DGIVGVLGGLAVLRALHASGHETRHPIELINWTNEEGARFAPAMLASGVFAGVFTEQE
ALDKTDRAGIRFEDALVGIGYRGSEPCGQHPVSAYFELHIEQGPILEAQHKTIGIVTG
VQGIRWYEVTLTGRDSHAGSTPMTMRADALLAAARMIEAVNQVALAFGPDAVGTVGLI
ESRPNSRNVVPGEVFFTIDLRHPDDTVVVRMEEAMRAKVAAIAAESGVGLALDCVWDS
PAVHFDPACIGAVRRAAESFGYPARDIVSGAGHDAAYLARVTPTTMIFVPCAGGLSHN
EAESAEPGDVTAGANVLLRAVLDADARLDA"
misc_feature 249644..250831
/locus_tag="Gdia_0228"
/note="allantoate amidohydrolase; Reviewed; Region:
PRK09290"
/db_xref="CDD:181761"
misc_feature 249668..250831
/locus_tag="Gdia_0228"
/note="M20 Peptidase beta-alanine synthase, an
amidohydrolase; Region: M20_bAS; cd03884"
/db_xref="CDD:193505"
misc_feature order(249884..249886,249917..249922,250019..250024,
250043..250045,250205..250207,250214..250216,
250274..250276,250280..250282,250499..250501,
250703..250708,250781..250783)
/locus_tag="Gdia_0228"
/note="active site"
/db_xref="CDD:193505"
misc_feature order(249884..249886,249917..249919,250019..250024,
250205..250207,250781..250783)
/locus_tag="Gdia_0228"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193505"
misc_feature order(250214..250225,250232..250237,250280..250282,
250313..250327,250331..250333,250340..250342,
250352..250357,250361..250369,250373..250381,
250385..250390,250394..250399,250418..250441,
250451..250456,250460..250471,250493..250495,
250499..250501,250700..250702)
/locus_tag="Gdia_0228"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193505"
gene 251031..252344
/locus_tag="Gdia_0229"
/db_xref="GeneID:6973621"
CDS 251031..252344
/locus_tag="Gdia_0229"
/note="catalyzes the formation of pyruvate and
beta-alanine from L-alanine and 3-oxopropanoate"
/codon_start=1
/transl_table=11
/product="beta alanine--pyruvate transaminase"
/protein_id="YP_002274641.1"
/db_xref="GI:209542412"
/db_xref="InterPro:IPR005814"
/db_xref="GeneID:6973621"
/translation="MPPTNHDAFWMPFTANRQFRKTPRMLVAADGMYYTTDDGRKVLD
GCAGLWCVNAGHNRPRITQAVQKTIATLDFAPTFQMGHPLAFEAADRIAALAPGDLNH
VFFCNSGSEAMDSALKIALAYHRVRGEGARTRLIGRERGYHGVGFGGISVGGLSGNRK
LYGSLLTGVDHLPHTLDIERNAFTRGLPAHGAELADNLERIVALHDASTIAAVVVEPM
AGSTGVLPPPVGYLKRLREICDKYGILLIFDEVITGFGRLGGTPFAAEKFGVLPDILA
CAKGVTNGTIPMGAAIARDHVHAAFMTGPETGIELPHGYTYSGHPVACAAAIATLDTY
AEENLFERAGDIAPYFEEAVHALRGLPHVIDIRNVGLVAGIELASRPGAVGARAYEVF
DRAFHKGILVRYTGDVVAVSPPLIIEKSQIDQVFGTLADIIHAVE"
misc_feature 251037..252338
/locus_tag="Gdia_0229"
/note="beta alanine--pyruvate transaminase; Provisional;
Region: PRK09221"
/db_xref="CDD:181707"
misc_feature 251043..252329
/locus_tag="Gdia_0229"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(251352..251360,251454..251459,251463..251465,
251676..251678,251775..251777,251781..251786,
251865..251867)
/locus_tag="Gdia_0229"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(251355..251360,251454..251459,251676..251678,
251775..251777,251784..251786,251865..251867)
/locus_tag="Gdia_0229"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 251865..251867
/locus_tag="Gdia_0229"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 252364..253824
/locus_tag="Gdia_0230"
/db_xref="GeneID:6973622"
CDS 252364..253824
/locus_tag="Gdia_0230"
/note="PFAM: permease for cytosine/purines uracil thiamine
allantoin;
KEGG: gdi:GDI2007 putative allantoin permease"
/codon_start=1
/transl_table=11
/product="cytosine/purines uracil thiamine allantoin
permease"
/protein_id="YP_002274642.1"
/db_xref="GI:209542413"
/db_xref="InterPro:IPR001248"
/db_xref="GeneID:6973622"
/translation="MTDTPPPATAAGYDPGLYNADLAPVPAERRDWSWVNMATVWMGM
VHNIVVYEAASGLMALGLSAWECLEVVAVAYMVLFLAMWFNARAGTRYGIPFCVLIRS
AFGPYGAQLPVVLRGFCAIFWFSVQAYAAAQAVDAVLSTLSPAWASMTPSLLGMQARM
WLAMAMVWALHAWIASHGVHRIRNFELVAGPLVIIVGLLATIWGLRVGHGLGPLFAQP
SHLHGAAFWSTFAMGVTGMIGMWATFAVNIPDLSRFVRSERDQVVGQAIGLPITALVF
TPMGIITTSATIILFGHPIWNPVDLLLALNHPVVTVLGGATLVLATLSVNVVANIMPA
CYDLVNLMPRRLDFNRASRLVLVLGVFFMPWLWFNEAAGIYRVLDLISGLLGPVTGIM
LADFYIVRRQVLDVPALYRHGGRYDGRNGWNVPALAAFAAGGAVASAGHVVPGLAGLN
TVAWFVGVAIGAGLYLALSPRRDAHPAEDAATLSNA"
misc_feature 252412..253776
/locus_tag="Gdia_0230"
/note="uncharacterized nucleobase-cation-symport-1 (NCS1)
transporter subfamily, YbbW-like; solute-binding domain;
Region: SLC-NCS1sbd_YbbW-like; cd11485"
/db_xref="CDD:212054"
misc_feature order(252490..252492,252499..252501,253324..253326,
253333..253338)
/locus_tag="Gdia_0230"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212054"
misc_feature order(252502..252504,252730..252732,252742..252744,
253081..253086,253090..253092,253339..253341,
253351..253353)
/locus_tag="Gdia_0230"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:212054"
gene complement(253850..254680)
/locus_tag="Gdia_0231"
/db_xref="GeneID:6973623"
CDS complement(253850..254680)
/locus_tag="Gdia_0231"
/EC_number="3.6.1.26"
/note="PFAM: CDP-diacylglycerol pyrophosphatase;
KEGG: gdi:GDI2008 putative CDP-diacylglycerol
pyrophosphatase"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol diphosphatase"
/protein_id="YP_002274643.1"
/db_xref="GI:209542414"
/db_xref="InterPro:IPR003763"
/db_xref="GeneID:6973623"
/translation="MKRVLLGAAVPAMLAAGILLTVARASGPARLNNDPNVLWSIVHD
RCVPNQVGENTPAPCAAVDTDRGYAVLKDRRGLAQYLVIATDRVTGIEDPSILSPAAP
DYFGAAWHQVDRSLARLGHTMPRETMALAINSQYGRSQNQLHIHIDCLAPNIRVALHW
ARPQIGHGWTRLVLNDHTYRATRIDGNSLDGAYPFRRLAASLADPAREMGEHTLVVVG
TVWPGGRPGFILLDDMVKPLSGDRAEGEELQDHACRIGHFEPGRAIQEQPYQQAMLPD
"
misc_feature complement(253910..254680)
/locus_tag="Gdia_0231"
/note="CDP-diacylglycerol pyrophosphatase; Region: CDH;
cl00934"
/db_xref="CDD:193978"
sig_peptide complement(254603..254680)
/locus_tag="Gdia_0231"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.930 at
residue 26"
gene complement(254677..256173)
/locus_tag="Gdia_0232"
/db_xref="GeneID:6973624"
CDS complement(254677..256173)
/locus_tag="Gdia_0232"
/note="PFAM: Ppx/GppA phosphatase;
KEGG: gdi:GDI2009 putative
guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase"
/codon_start=1
/transl_table=11
/product="Ppx/GppA phosphatase"
/protein_id="YP_002274644.1"
/db_xref="GI:209542415"
/db_xref="InterPro:IPR003695"
/db_xref="GeneID:6973624"
/translation="MTRAGSTHRRSAVVDLGSNSVRLVVFDGITRNPIPIFNEKAVLR
LGRGLNATGRLNEEGVGAAIQVMDRFYAIARGMDADPFEILATAAVRDASNGGEFVET
LRARMPGVPIRILSGEEEADYSATGVLCGLPEADGLVADIGGGSLELIRLSGGQKLDA
CTLRLGVIRLNDRSENDLAKARAIADADIAQVGWLDDMQGRPLYLVGGAFRALARLQI
ARTNYPLNIVHLYTMSGDGAKDMADWAASTPRRTLERLPGAPRKRLDDVPFAATVLRR
LIRRVQPTCVVVSVDGLREGWYMRRVAASVKALDPQEAVAHEMCTRLGRSETLPDRLM
TWTAPLFADEDPSMRRLRRAACLMSDIGSYDHPEYRAEQTYLRVLRMQGVGFDHPARA
FVALTLAVRYEAELGQEFLQPSRLLLPPEQYGRAVVLGLALRLAYTVCGGTEELLDGT
WVGMSKQGLALHLSAGRGVVRGESVRRRLDRLADALSLPARIEEAATA"
misc_feature complement(255277..256146)
/locus_tag="Gdia_0232"
/note="exopolyphosphatase; Region: exo_poly_only;
TIGR03706"
/db_xref="CDD:188376"
misc_feature complement(255286..256071)
/locus_tag="Gdia_0232"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene complement(256261..258555)
/locus_tag="Gdia_0233"
/db_xref="GeneID:6973625"
CDS complement(256261..258555)
/locus_tag="Gdia_0233"
/EC_number="2.7.4.1"
/note="catalyzes the reversible transfer of the terminal
phosphate of ATP to form a long chain polyphosphate"
/codon_start=1
/transl_table=11
/product="polyphosphate kinase"
/protein_id="YP_002274645.1"
/db_xref="GI:209542416"
/db_xref="InterPro:IPR003414"
/db_xref="GeneID:6973625"
/translation="MTRPTRKTPARQPSARPAPKRSVPKRTGTSARRRAPASDTTPPV
PPPPVDMQSPTRFINRELSWLDFNQRVVEEADNPRNPLLERLRFLSISAGNLDEFYSV
RVAGLVGQVREGLVTSSPDGLTPVQQLAAVRTRTIRLLREQQRIWKDLRGLLAESGIV
VCSLDTISDADRDWLDSCFMDRIFPVLTPLAIDPAHPLPFIPHMGLALSLRLMSRDTG
RFVMSAMILLPAQIERFVRLPANLSPPGVTRFILLENLIALCIDRLFPGMVAGEWGVL
RVIRDTDVEFEDEAEDLVRSYESALKRRRRGVVIHLDIDSRMPADLGQAVATDLAVPP
DEVEIQPGLIGVVDLKQLIVDDRPDLLFPPYTPRFPERVVDFGGDCFAAIRAKDMIVH
HPFESFDVVIQFLRQAALDPAVVAIKQTLYRTSRDSPIVKALIEAAEAGKSVTAMVEL
RARFDEEANIRLARALEAAGVQVVFGFADLKTHAKLSLVVRREGGSLRSYAHFGTGNY
HPITARIYTDLSFFTCDPELARDSARLFNYMTGYALPTRMEAIAFSPVTIRRTLEELI
EGEIEHVRAGRPGQIWLKMNSLVDPDLIDRLYRASCAGVRIMGVVRGICCLRPGVPGL
SENIRIKSIVGRFLEHARIFAFGDGHRLPSRQARIYISSADWMVRNMDWRVESMVPMR
DPTVHAQVLDQIMVTDLKDNLQSWILQQNGVWRRLEPGAKPFSAHDYFMTNPSLSGRG
RAAQDSAIRVSTALPRHQDRILDD"
misc_feature complement(256327..258390)
/locus_tag="Gdia_0233"
/note="polyphosphate kinase; Provisional; Region:
PRK05443"
/db_xref="CDD:180085"
misc_feature complement(258073..258390)
/locus_tag="Gdia_0233"
/note="Polyphosphate kinase N-terminal domain; Region:
PP_kinase_N; pfam13089"
/db_xref="CDD:205270"
misc_feature complement(257437..258051)
/locus_tag="Gdia_0233"
/note="Polyphosphate kinase middle domain; Region:
PP_kinase; pfam02503"
/db_xref="CDD:202263"
misc_feature complement(256930..257421)
/locus_tag="Gdia_0233"
/note="Catalytic C-terminal domain, first repeat, of
Pseudomonas aeruginosa polyphosphate kinase 1 and similar
proteins; Region: PLDc_PaPPK1_C1_like; cd09165"
/db_xref="CDD:197262"
misc_feature complement(order(256939..256947,256951..256956,
256960..256965,256972..256977,256981..256983,
256993..256995,256999..257019,257041..257049,
257098..257100,257104..257121,257347..257349,
257356..257358,257362..257376,257380..257391,
257407..257412,257419..257421))
/locus_tag="Gdia_0233"
/note="putative domain interface [polypeptide binding];
other site"
/db_xref="CDD:197262"
misc_feature complement(order(257002..257004,257008..257010,
257035..257037,257041..257043,257101..257103,
257107..257109,257197..257199,257287..257292))
/locus_tag="Gdia_0233"
/note="putative active site [active]"
/db_xref="CDD:197262"
misc_feature complement(257107..257109)
/locus_tag="Gdia_0233"
/note="catalytic site [active]"
/db_xref="CDD:197262"
misc_feature complement(256408..256914)
/locus_tag="Gdia_0233"
/note="Catalytic C-terminal domain, second repeat, of
Pseudomonas aeruginosa polyphosphate kinase 1 and similar
proteins; Region: PLDc_PaPPK1_C2_like; cd09168"
/db_xref="CDD:197265"
misc_feature complement(order(256474..256476,256483..256488,
256495..256497,256501..256503,256510..256512,
256519..256521,256525..256539,256567..256575,
256627..256647,256903..256911))
/locus_tag="Gdia_0233"
/note="putative domain interface [polypeptide binding];
other site"
/db_xref="CDD:197265"
misc_feature complement(order(256528..256530,256534..256536,
256561..256563,256567..256569,256630..256632,
256636..256638,256642..256644,256720..256722))
/locus_tag="Gdia_0233"
/note="putative active site [active]"
/db_xref="CDD:197265"
misc_feature complement(256636..256638)
/locus_tag="Gdia_0233"
/note="catalytic site [active]"
/db_xref="CDD:197265"
gene complement(258673..259440)
/locus_tag="Gdia_0234"
/db_xref="GeneID:6973626"
CDS complement(258673..259440)
/locus_tag="Gdia_0234"
/note="PFAM: Chromosomal replication initiator DnaA;
SMART: AAA ATPase;
KEGG: gdi:GDI2011 putative DNA replication"
/codon_start=1
/transl_table=11
/product="Chromosomal replication initiator DnaA"
/protein_id="YP_002274646.1"
/db_xref="GI:209542417"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:6973626"
/translation="MVERTAQNQDETAPRDSFGQLVLPFAHRTRHARADFVAAPSNGM
ARAWLLGAPAWPEHRLALWGAAGAGKTHLLDIWAQERGAVLLTGADLTQATLGRLFDD
APDMLRAVAVDDADRVEDQRALLHLLNAAREHRVAVVLAARLSPARWPVVLPDLASRL
RATMAIELRQPEDTLLRILLLRHLADRQIVVSQPVTEWLLRRLPRTASAIREAAIRLD
HAGLAAGRRVTRALALSVLHDMLAHDGAPDEADARAR"
misc_feature complement(258709..259398)
/locus_tag="Gdia_0234"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(258727..259383)
/locus_tag="Gdia_0234"
/note="DnaA regulatory inactivator Hda; Region:
DnaA_homol_Hda; TIGR03420"
/db_xref="CDD:163254"
gene 259570..260661
/locus_tag="Gdia_0235"
/db_xref="GeneID:6973627"
CDS 259570..260661
/locus_tag="Gdia_0235"
/EC_number="6.3.3.1"
/note="KEGG: gdi:GDI2012 putative
phosphoribosylformylglycinamidine cyclo-ligase;
TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase;
PFAM: AIR synthase related protein; AIR synthase related
protein domain protein"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine cyclo-ligase"
/protein_id="YP_002274647.1"
/db_xref="GI:209542418"
/db_xref="InterPro:IPR000728"
/db_xref="InterPro:IPR004733"
/db_xref="InterPro:IPR010918"
/db_xref="GeneID:6973627"
/translation="MTSAPPFHPPQPAAGATYRDAGVDIAAGDALVDAIKPAARATDR
PGTMGGLGGFGALFDLKAAGFTDPVLVSCTDGVGTKLMVAIESGLHETVGIDLVAMCV
NDLVVQGAEPLFFLDYFATGRLAVEDAAKVVRGIAQGCRESGCALVGGETAEMPGMYG
PGHYDLAGFSVGAAERAALLPADIAAGDTLIGLPASGVHSNGFSLVRAIVARSGLAWD
APCPFAPGQTLAQALMAPTRLYVKAVLDLHRQGLIQGAAHITGGGLPGNLPRVLPAGL
TALIDGGAWPIPPVFGWLARTGQVDPDEMLKVFNCGVGMVLIARDGDAALQSLRAAGQ
DAFVIGRLEEGTPGAAAGLRFTTRPDFTG"
misc_feature 259618..260592
/locus_tag="Gdia_0235"
/note="phosphoribosylaminoimidazole synthetase;
Provisional; Region: PRK05385"
/db_xref="CDD:180049"
misc_feature 259768..260598
/locus_tag="Gdia_0235"
/note="PurM (Aminoimidazole Ribonucleotide [AIR]
synthetase), one of eleven enzymes required for purine
biosynthesis, catalyzes the conversion of
formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
ADP, and Pi, the fifth step in de novo purine
biosynthesis; Region: PurM; cd02196"
/db_xref="CDD:100032"
misc_feature order(259774..259785,259789..259791,259795..259797,
259813..259815,259879..259881,259891..259893,
259909..259911,259918..259920,259927..259929,
260020..260022,260032..260034,260038..260040,
260059..260064,260074..260076,260377..260379)
/locus_tag="Gdia_0235"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100032"
misc_feature order(259879..259881,260014..260022)
/locus_tag="Gdia_0235"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:100032"
gene 260666..261304
/gene="purN"
/locus_tag="Gdia_0236"
/db_xref="GeneID:6973628"
CDS 260666..261304
/gene="purN"
/locus_tag="Gdia_0236"
/note="glycinamide ribonucleotide transformylase; GAR
Tfase; catalyzes the synthesis of
5'-phosphoribosylformylglycinamide from
5'-phosphoribosylglycinamide and
10-formyltetrahydrofolate; PurN requires formyl folate for
the reaction unlike PurT which uses formate"
/codon_start=1
/transl_table=11
/product="phosphoribosylglycinamide formyltransferase"
/protein_id="YP_002274648.1"
/db_xref="GI:209542419"
/db_xref="InterPro:IPR001555"
/db_xref="InterPro:IPR002376"
/db_xref="InterPro:IPR004607"
/db_xref="GeneID:6973628"
/translation="MTHDTHAAARRPIAILISGRGSNMRALIDACAAPDFPARIALVL
SNRPDAPGLEVARAAGLRAEAIDHRPFRGDRAAHEHAIDATLRAAGVELVCLAGYMRL
LTPFLTGAWAGRMLNIHPSLLPAFPGLHTHERALQAGVKLHGCTVHLVTEIMDDGPIL
GQAAVPVHADDTPDRLAARVLEQEHRLYPAALRKVLTPDAVPQPDIGSLLFL"
misc_feature 260702..261250
/gene="purN"
/locus_tag="Gdia_0236"
/note="Phosphoribosylglycinamide formyltransferase (GAR
transformylase, GART); Region: FMT_core_GART; cd08645"
/db_xref="CDD:187714"
misc_feature 260702..261244
/gene="purN"
/locus_tag="Gdia_0236"
/note="phosphoribosylglycinamide formyltransferase;
Reviewed; Region: purN; PRK05647"
/db_xref="CDD:180182"
misc_feature order(260714..260716,260729..260737,260951..260974,
260987..260989,261014..261025,261047..261049,
261107..261109,261113..261118,261125..261130,
261215..261217)
/gene="purN"
/locus_tag="Gdia_0236"
/note="active site"
/db_xref="CDD:187714"
misc_feature order(260729..260734,260954..260959,261017..261019,
261023..261025,261215..261217)
/gene="purN"
/locus_tag="Gdia_0236"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187714"
misc_feature order(260951..260953,260960..260962,260966..260974,
260987..260989,261014..261016,261113..261118,
261125..261130)
/gene="purN"
/locus_tag="Gdia_0236"
/note="cosubstrate binding site; other site"
/db_xref="CDD:187714"
misc_feature order(261014..261016,261020..261022,261128..261130)
/gene="purN"
/locus_tag="Gdia_0236"
/note="catalytic site [active]"
/db_xref="CDD:187714"
gene complement(261354..261776)
/gene="ndk"
/locus_tag="Gdia_0237"
/db_xref="GeneID:6973629"
CDS complement(261354..261776)
/gene="ndk"
/locus_tag="Gdia_0237"
/EC_number="2.7.4.6"
/note="catalyzes the formation of nucleoside triphosphate
from ATP and nucleoside diphosphate"
/codon_start=1
/transl_table=11
/product="nucleoside diphosphate kinase"
/protein_id="YP_002274649.1"
/db_xref="GI:209542420"
/db_xref="InterPro:IPR001564"
/db_xref="GeneID:6973629"
/translation="MATERTLSIIKPDATRRNLTGKINAVFEDAGLRIVAQKRVQLSE
AEAGAFYAVHKDRPFYGELVSFMVSGPVVLQVLEGENAVLKHRDVMGATDPKKAAAGT
VRAQFAESIEANSVHGSDSLENANTEIAFFFAQTEILP"
misc_feature complement(261378..261767)
/gene="ndk"
/locus_tag="Gdia_0237"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:58528"
misc_feature complement(order(261393..261395,261417..261422,
261426..261428,261435..261437,261465..261467,
261498..261500,261516..261518,261600..261602,
261624..261626,261744..261746))
/gene="ndk"
/locus_tag="Gdia_0237"
/note="active site"
/db_xref="CDD:58528"
misc_feature complement(order(261660..261668,261693..261695,
261702..261704,261711..261719,261732..261734))
/gene="ndk"
/locus_tag="Gdia_0237"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:58528"
gene 262017..263894
/locus_tag="Gdia_0238"
/db_xref="GeneID:6973630"
CDS 262017..263894
/locus_tag="Gdia_0238"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: gdi:GDI2015 putative ABC transporter ATP-binding
protein"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_002274650.1"
/db_xref="GI:209542421"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6973630"
/translation="MSLLVISDLTLRIAGRTLLDGASLTVDPGRKIGLVGRNGAGKST
LLAAIAGDIAPDGGTIHLSSRARMARIRQEAPSGDANLLDTVLAGDAERTALMAEADQ
TPDPVRLADIHERLRAIGADSAPARAATILSGLGFDADAQARPVSDFSGGWRMRVALA
TALFLNPDLLLLDEPTNHLDLEATIWLENWLSRFAGAALIVSHDRGLLDRAVDAIAHL
DQRKLTLTPGGYSEFVRIRTEQALQQARAAERIAAQRAHMQSFVDRFRAKATKARQAQ
ARLKALEKLPVLDTVVEDAPTRFAFPEPAPLPPPMLTLDRVSVGYGGRPILSGLTLRL
DMEDRIALLGANGNGKSTFAKLIAGRLAPISGTVAHGPRLRVGYFAQHQAEELVPGET
PVDHMTRVMPKAPPTAVRAQLARFGLDADRADTVTRDLSGGEKARLLLALATREAPHL
LILDEPTNHLDLDAREALIRALAEFEGAVLLISHDPHLVELVADRLWLVGDGTVRPFD
GDMAEYRTWLSERARAATRPATPAAPRRDDRRERAEARKAIAPLRRKARDAEARMSRL
ADERGRLETRLADPALYAAGGADEVTAINTRLAAIGREQEEAEEEWLLAEAAIEESAA
E"
misc_feature 262023..263795
/locus_tag="Gdia_0238"
/note="putative ABC transporter ATP-binding protein;
Provisional; Region: PRK10636"
/db_xref="CDD:182605"
misc_feature 262026..>262235
/locus_tag="Gdia_0238"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 262122..262145
/locus_tag="Gdia_0238"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(262131..262136,262140..262148,262233..262235)
/locus_tag="Gdia_0238"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 262224..262235
/locus_tag="Gdia_0238"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <262452..262682
/locus_tag="Gdia_0238"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
misc_feature 262662..262907
/locus_tag="Gdia_0238"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:205105"
misc_feature 262950..263525
/locus_tag="Gdia_0238"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
gene complement(263917..265482)
/locus_tag="Gdia_0239"
/db_xref="GeneID:6973631"
CDS complement(263917..265482)
/locus_tag="Gdia_0239"
/note="PFAM: outer membrane efflux protein;
KEGG: gdi:GDI2016 putative outer membrane protein"
/codon_start=1
/transl_table=11
/product="outer membrane efflux protein"
/protein_id="YP_002274651.1"
/db_xref="GI:209542422"
/db_xref="InterPro:IPR003423"
/db_xref="GeneID:6973631"
/translation="MTRPASLATIGFAMLGLAGCATQALHSAPDRPDAPWRPNVSAAG
EIIPGPCCARGLALPPGYSLPSNRNIQGRPAPPELQGAHPYSLAELIDIAQSTNPDTR
RAWNTARDAALAVGIARSTYLPHLTATVVGGYNHAHDSGANAAIGNVDIGGTSTRVGN
GEVQTLGLEWLLFDFGKREATIDAARQSQLATNILFTGAHQKLIYAVTLAFYTHAAAT
ARVTLLHQALDNARKVEDAADMRLRRGQGTVVDATQARQATAQAELRLVQAEGGAENT
YLDLMTAIGIPPGTHVLTQDISDRPLSLADARLTDDMIQRDAARRPDVLAAYATARAS
RSAVAAARAEFLPKIFVSGNVAYATGRLALSSVPGIGANAAPTLNLSSNNFSSLILGG
ITVPIFDGGMRAAALKQARNRFDSAETNLRQTLDEAVKQLVVAENGVHTSLSAYAASG
RLQTAAQTSFDATLSAYRNGVGSITQATLAQSGLIDARLERSDAYYAALIAASSLAFA
AGALGDASPTEQP"
sig_peptide complement(265399..265482)
/locus_tag="Gdia_0239"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.899 at
residue 28"
misc_feature complement(264013..265236)
/locus_tag="Gdia_0239"
/note="type I secretion outer membrane protein, TolC
family; Region: type_I_sec_TolC; TIGR01844"
/db_xref="CDD:162556"
gene complement(265479..267281)
/locus_tag="Gdia_0240"
/db_xref="GeneID:6973632"
CDS complement(265479..267281)
/locus_tag="Gdia_0240"
/note="KEGG: gdi:GDI2017 putative multidrug resistance
protein MdtO"
/codon_start=1
/transl_table=11
/product="putative multidrug resistance protein MdtO"
/protein_id="YP_002274652.1"
/db_xref="GI:209542423"
/db_xref="GeneID:6973632"
/translation="MAPPVPDRHIADPGRLTLGRAWRLACDPEPGRLGYALRMAAACA
TTVLVGEIWQVPDLAVPALVTMALWQKDRVTNLVAGLAVNVLILVILAMLYGLIRLTL
DHPLGIVVGVAILSFCFFFLGSASKLKPLAYMLGLITVYGLIAVDQAPVGEIATRALL
YTDLFLAIPGLVMIGLGLIICPSPRTVLMRAIAGRLRMAMALLRHPDDATRERAQDML
RQGDAGMMANVKMAALERIWNRRDLACLKQAAYSSIGVLALADAAVREGGSPCPSALL
ETLEEMAAMFEAGDYPADIAPPAVPSNEPALAAMAALIAIFTTPAPEEKPPEEKKSGG
FFFPDAFTNPDHVRFAVKGTAAVMTSYFIFKILDWPGIHTCIITCFIVAQPTMGEMIS
KLMLRIGGALLGAALGIGSIILLMPHLNDITGFLALVFAGAFIAAWVKTGDERIAYAG
FQIGLAFFLTDIKDYGPTTDMTVARDRVVGIMLGNFITYAMFTSFWPASAWDRIAATL
RGVVRALAAQRDSITPQARVTHAAEVLGAISASQRTLEFAATEPVHMRADTERMSQCG
EALRDASRLAEDLLIPERDAQTRARFERLESLAS"
misc_feature complement(265560..267203)
/locus_tag="Gdia_0240"
/note="multidrug efflux system protein MdtO; Provisional;
Region: PRK11427"
/db_xref="CDD:183131"
gene complement(267262..268296)
/locus_tag="Gdia_0241"
/db_xref="GeneID:6973633"
CDS complement(267262..268296)
/locus_tag="Gdia_0241"
/note="with MdtO and MdtP is involved in resistance to
puromycin, acriflavine and tetraphenylarsonium chloride"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein MdtN"
/protein_id="YP_002274653.1"
/db_xref="GI:209542424"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:6973633"
/translation="MSGRKPVGLIIAVACVGAAVLLGVHVANEDSAHPSSDSGSIDAE
IVHMASTVGGRLVDLPVHVNQAVRKGDLLYRLDPEPYELTVRQAQANLALAQAEVENQ
RRLVSVKTADAAVAQAQTARARTNRDLAARTVERLSPLAGHAYIPLQQYDQARVALRD
AEISLEQAHRQEAAAQTAIGDLNSTLAARDAAAAALDHARYELRQTTVVAPLDGYVTS
LRVKPGEILAPAQVLFTLIANDAWYANANIREVDLRPIRPGDCATVHSMIDRHVAIRG
HVDSIGWGVLSADSAGSARALPVVPREMDWVHVAQRFPVRVKIDRADPNLLRLGATAT
VEIRHGAACP"
sig_peptide complement(268216..268296)
/locus_tag="Gdia_0241"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.965) with cleavage site probability 0.516 at
residue 27"
misc_feature complement(267268..268215)
/locus_tag="Gdia_0241"
/note="multidrug resistance protein MdtN; Provisional;
Region: PRK10476"
/db_xref="CDD:182488"
misc_feature complement(268039..268152)
/locus_tag="Gdia_0241"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature complement(<267451..267678)
/locus_tag="Gdia_0241"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene complement(268314..268586)
/locus_tag="Gdia_0242"
/db_xref="GeneID:6973634"
CDS complement(268314..268586)
/locus_tag="Gdia_0242"
/note="KEGG: bxe:Bxe_B2118 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274654.1"
/db_xref="GI:209542425"
/db_xref="GeneID:6973634"
/translation="MTSHSAPLARVAPVLFLGGCAVRGAPSFPLVGAYFPGWMFCAMV
GIAAAVGLRVVFIQTGIDAILSFRLFTYVSLGVIAALLAWLIWFGP"
gene complement(268734..268928)
/locus_tag="Gdia_0243"
/db_xref="GeneID:6973635"
CDS complement(268734..268928)
/locus_tag="Gdia_0243"
/note="KEGG: gdi:GDI2019 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274655.1"
/db_xref="GI:209542426"
/db_xref="GeneID:6973635"
/translation="MNAENGQDAPIGYYNAPHGVAAAERALALGAFAIGTGEFAIMGM
LPDMARNRSAGPGRSCRPAA"
gene 269111..270241
/locus_tag="Gdia_0244"
/db_xref="GeneID:6973636"
CDS 269111..270241
/locus_tag="Gdia_0244"
/note="PFAM: protein of unknown function UPF0118;
KEGG: gdi:GDI2020 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274656.1"
/db_xref="GI:209542427"
/db_xref="InterPro:IPR002549"
/db_xref="GeneID:6973636"
/translation="MPTKAVTESRPDTRPIRREPEQDRPEQDPRAVQLARIHHLLQVA
ILLAVMVLSIWLIGDVLMVVFAATLIAVILHNLAAMVERRTRLPYWLALSLVVVVLLA
AIGGLGWSSGPAIAEQATRLRIALTTQAHSLRGQLNASTMGRTVLDYLPQSLGGNQAG
GGDNGMGSRIAGSMTGVLSSAFGAAGTLAVILIAGLYFALSPALYVNGLLRLIPPGHR
PAARTLLLVAGRTLWAWTAGQALDMLVVGILSGVGLWFIGVPLALALGVVAGMANFIP
YIGAFIGAVPAILLGLSQGTREGLLVMALYAAIQFFEGNVMAPLIQRHAVQMPPGLTI
LSQTVFGTILGLPGLVLASPLTAALLAMMDRATPPLDEEDRV"
misc_feature 269189..270202
/locus_tag="Gdia_0244"
/note="Predicted permease, member of the PurR regulon
[General function prediction only]; Region: yhhT; COG0628"
/db_xref="CDD:30973"
misc_feature <269927..270178
/locus_tag="Gdia_0244"
/note="pheromone autoinducer 2 transporter; Reviewed;
Region: tqsA; cl00465"
/db_xref="CDD:207060"
gene complement(270243..270824)
/locus_tag="Gdia_0245"
/db_xref="GeneID:6973637"
CDS complement(270243..270824)
/locus_tag="Gdia_0245"
/note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA,
variant 3; HAD-superfamily hydrolase, subfamily IA,
variant 1;
PFAM: Haloacid dehalogenase domain protein hydrolase;
KEGG: gdi:GDI2021 putative hydrolase protein"
/codon_start=1
/transl_table=11
/product="HAD-superfamily hydrolase"
/protein_id="YP_002274657.1"
/db_xref="GI:209542428"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006402"
/db_xref="InterPro:IPR006439"
/db_xref="GeneID:6973637"
/translation="MIVVPPDTTALIFDCDGTLVDSLPLYLKAWLGAFETVADHRMAP
EWFHGRGGLSEHMVLDLIEAELGRTLDRAAIVRAARQGVLATMAELREIGIVADLARR
YRGQLPMAVASSGSREIVTAALSHTGLMTLFDTVVTIDDVARPKPAPDLFLEAARRLD
AAPRTCLVLEDSNEGLAAAGHAGMRGLDIRPFL"
misc_feature complement(270258..270800)
/locus_tag="Gdia_0245"
/note="beta-phosphoglucomutase family hydrolase; Region:
PGMB-YQAB-SF; TIGR02009"
/db_xref="CDD:162658"
misc_feature complement(270264..270797)
/locus_tag="Gdia_0245"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(order(270483..270488,270777..270785))
/locus_tag="Gdia_0245"
/note="active site"
/db_xref="CDD:119389"
misc_feature complement(270768..270785)
/locus_tag="Gdia_0245"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature complement(270486..270488)
/locus_tag="Gdia_0245"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(270821..271312)
/locus_tag="Gdia_0246"
/db_xref="GeneID:6973638"
CDS complement(270821..271312)
/locus_tag="Gdia_0246"
/note="KEGG: gdi:GDI2022 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274658.1"
/db_xref="GI:209542429"
/db_xref="GeneID:6973638"
/translation="MKRENALLLGILGCLAFAVATATVVWSFAIPNFRPLTIPHMNAG
VISVGPMRQQRALSAAEIRTLNDWLQQHRGGWGPLGQTPPSSGDATITLTADRPAGPD
GKPVPYVITLWTGISAADWNATLFLEDRPGAVIRIERFPEKDFAVLRQMVDQQPYERT
AFP"
sig_peptide complement(271244..271312)
/locus_tag="Gdia_0246"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.438 at
residue 23"
gene complement(271332..272474)
/locus_tag="Gdia_0247"
/db_xref="GeneID:6973639"
CDS complement(271332..272474)
/locus_tag="Gdia_0247"
/note="PFAM: DegT/DnrJ/EryC1/StrS aminotransferase;
KEGG: gdi:GDI2023 putative aminotransferase protein"
/codon_start=1
/transl_table=11
/product="DegT/DnrJ/EryC1/StrS aminotransferase"
/protein_id="YP_002274659.1"
/db_xref="GI:209542430"
/db_xref="InterPro:IPR000653"
/db_xref="GeneID:6973639"
/translation="MTASPETLSPIAFLDLPAQQARLGDAIRRRVDAVMAHCRFVMGP
EVAELEQALATYAGARECVGVSSGTDAIQIVMMAEGIGPGDAVFLPAFTYTATAEVPL
LLHATPVFVDVDPRTFQIDPASLEKRIADVRAAGTLRPRAIVGVDLFGQPAPWPELRA
IAAREGLFLMDDCAQSFGGALTGRKLGREATATTLSFFPSKPLGGYGDGGAILTDDPE
RADVYRSLRTHGEGKTRYEVLRTGMNGRLDTLQAAVLLAKLEGFDAELARREEIAGAY
DAGLAHHVTTPARVPDSHSAWAIYAVLVESEAARAALQERLRAKGVPSAIYYPRPLHL
QPAYQAHHDGTCLPVAEDLSSRILALPIHPELTDADVARVIAAVRG"
misc_feature complement(271374..272444)
/locus_tag="Gdia_0247"
/note="Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall biogenesis
[Cell envelope biogenesis, outer membrane]; Region: WecE;
COG0399"
/db_xref="CDD:30748"
misc_feature complement(271374..272396)
/locus_tag="Gdia_0247"
/note="3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The members of this CD are involved in various
biosynthetic pathways for secondary...; Region: AHBA_syn;
cd00616"
/db_xref="CDD:99740"
misc_feature complement(order(271494..271496,271872..271877,
271887..271889,271950..271952,271959..271961,
272268..272273))
/locus_tag="Gdia_0247"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99740"
misc_feature complement(order(271872..271874,271887..271889,
271950..271952,271959..271961,272196..272198,
272268..272273))
/locus_tag="Gdia_0247"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99740"
misc_feature complement(271872..271874)
/locus_tag="Gdia_0247"
/note="catalytic residue [active]"
/db_xref="CDD:99740"
gene complement(272471..274465)
/locus_tag="Gdia_0248"
/db_xref="GeneID:6973640"
CDS complement(272471..274465)
/locus_tag="Gdia_0248"
/note="PFAM: NAD-dependent epimerase/dehydratase;
short-chain dehydrogenase/reductase SDR; 3-beta
hydroxysteroid dehydrogenase/isomerase; polysaccharide
biosynthesis protein CapD; dTDP-4-dehydrorhamnose
reductase; Male sterility domain; KR domain protein;
KEGG: gdi:GDI2024 putative capsular polysaccharide
biosynthesis protein CapD"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein CapD"
/protein_id="YP_002274660.1"
/db_xref="GI:209542431"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR003869"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR013120"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:6973640"
/translation="MVGTMASQRPDPPLPADRRRPVNRIAVNVLLDGLLAALSAPLAR
WLADPRGGLLHPLWFVAGGAITLIISGLPFRVQQQYWRFSGVGDLLNIAGASVASAIL
FALGLHVTGFPIPTPTFPIIHALVLLTLMGGIRIIYRLSYRRTARRQASSQVILVGSD
NSADLFIRAVERAPDPAFRVAGIVTQGRRQAGRRIHGIPILGHVEGMDDILARLDGHG
GRPERLVITDAAFRGEDLAEIMQVAERRGLTVLRAPVLTDLTPADRLELRPVAIEDLL
NRPQVGLDHDGMAALLGGRTVLVTGAGGSIGSELARQIAEYEPGRLLLLDHGEFALWQ
IDVELSERAPRLRRETILADIRDRARIEQVCAQYRPELVFHAAALKHVPMVEANPCEG
VLTNVIGTRIVADAAARHGARALVMVSTDKAVNPSSLMGASKRAAEMYCQALDVEART
GDESGVMRCVTVRFGNVLGSTGSVVPLFRRQLERGGPLTVTHPDMQRYFMTVSEAVGL
VLQASVRGTIRARAGSGTDTLLRSGGIFVLDMGKPIRIVDLARQMIRLAGLRPDQDVP
IRFTGLRPGEKLFEELFHGREAPVATDHPGLKMATPRMVDRGAVGLAIDTLEAACRAE
DTPAVLALIGSLVPEFAHNPTGDVRDRLADPTDAERTMTP"
misc_feature complement(272534..274381)
/locus_tag="Gdia_0248"
/note="Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: COG1086"
/db_xref="CDD:31283"
misc_feature complement(272681..273586)
/locus_tag="Gdia_0248"
/note="UDP-Glcnac (UDP-linked N-acetylglucosamine)
inverting 4,6-dehydratase, extended (e) SDRs; Region:
UDP_invert_4-6DH_SDR_e; cd05237"
/db_xref="CDD:187548"
misc_feature complement(order(273053..273058,273065..273076,
273164..273166,273212..273214,273281..273283,
273326..273328,273332..273340,273401..273409,
273485..273490,273548..273559,273563..273565))
/locus_tag="Gdia_0248"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187548"
misc_feature complement(order(273035..273037,273050..273055,
273284..273286,273293..273295,273302..273304,
273314..273316,273323..273334,273386..273388,
273395..273397,273404..273415,273455..273457,
273467..273469,273479..273481,273485..273487))
/locus_tag="Gdia_0248"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187548"
misc_feature complement(order(272738..272740,272747..272749,
272828..272830,272975..272977,272981..272983,
272993..273001,273032..273037,273044..273052,
273068..273073,273176..273178,273200..273208,
273326..273328))
/locus_tag="Gdia_0248"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187548"
misc_feature complement(order(273164..273166,273176..273178,
273206..273208,273278..273280))
/locus_tag="Gdia_0248"
/note="active site"
/db_xref="CDD:187548"
gene 274521..275555
/locus_tag="Gdia_0249"
/db_xref="GeneID:6973641"
CDS 274521..275555
/locus_tag="Gdia_0249"
/note="PFAM: glycosyl transferase family 4;
KEGG: gdi:GDI2025 putative glycosyl transferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_002274661.1"
/db_xref="GI:209542432"
/db_xref="InterPro:IPR000715"
/db_xref="GeneID:6973641"
/translation="MNHFVFPPSVPFAFLLFAVWSGAALMVAGAIRLGVLDHPGHRSS
HTRPTPKGGGIGVVTAFVLAVPAARLLHGLPMLTPAVAGLLAATILLGGVSWLDDVYQ
WPPSLKLAAQFAASILVVATGPHPTGIAMPIGGAVLSVGVLVFMTNAVNFMDGLNGLA
SGSILLACLVIGGLASGGADRAGLGDMALILAAALAGFLPFNFPAARIFMGDVGSQSC
GLLMGAFGLAGAAGGTGGGLGLAVPLLMAGLLYDVGYTLLRRWRNGARLVESHREHLY
QLATQAGMSPVVVTLVQWAFVLWGGVAALLMQQGRTGPAGALVLVLLPQLGWTGIVRG
RIRRMPPRDA"
sig_peptide 274521..274610
/locus_tag="Gdia_0249"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.785) with cleavage site probability 0.343 at
residue 30"
misc_feature 274554..>275165
/locus_tag="Gdia_0249"
/note="UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane];
Region: Rfe; COG0472"
/db_xref="CDD:30820"
misc_feature 274623..275387
/locus_tag="Gdia_0249"
/note="The members of this subfamily catalyze the
formation of a phosphodiester bond between a
membrane-associated undecaprenyl-phosphate (Und-P)
molecule and N-acetylhexosamine 1-phosphate, which is
usually donated by a soluble UDP-N-acetylhexosamine
precursor; Region: GT_WbpL_WbcO_like; cd06854"
/db_xref="CDD:133464"
misc_feature 274812..274817
/locus_tag="Gdia_0249"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133464"
misc_feature 275145..275156
/locus_tag="Gdia_0249"
/note="putative catalytic motif [active]"
/db_xref="CDD:133464"
misc_feature order(275298..275300,275331..275342)
/locus_tag="Gdia_0249"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:133464"
gene complement(275602..276063)
/locus_tag="Gdia_0250"
/db_xref="GeneID:6973642"
CDS complement(275602..276063)
/locus_tag="Gdia_0250"
/note="KEGG: gdi:GDI2026 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274662.1"
/db_xref="GI:209542433"
/db_xref="GeneID:6973642"
/translation="MRLATRVAAAAVLATPFLAASLPGSAARAADDLGTPSGHIRLVA
KSADVGVGWTWGNGTLTYGHHTYHFTVKGGSIAAVGYSSVVSTGTVYNLKHLHDFDGT
YVAANGEATLGNGVGGTLMHNGNNVTIRIETLSKGARLAGAAQGLELTLTK"
sig_peptide complement(275974..276063)
/locus_tag="Gdia_0250"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.920 at
residue 30"
gene complement(276304..276714)
/locus_tag="Gdia_0251"
/db_xref="GeneID:6973643"
CDS complement(276304..276714)
/locus_tag="Gdia_0251"
/note="PFAM: regulatory protein MarR;
KEGG: gdi:GDI2027 putative transcriptional regulator, MarR
family"
/codon_start=1
/transl_table=11
/product="MarR family transcriptional regulator"
/protein_id="YP_002274663.1"
/db_xref="GI:209542434"
/db_xref="InterPro:IPR000835"
/db_xref="GeneID:6973643"
/translation="MAQNSSTSDQLISTLRDTVVAMVRRDGPDLSARQLGVFLTCYLQ
EGAHTVRGLASTLNVSKPAITRALDRLGELDLARRKVDPMDRRSVLVQRTLKGAAYLR
ELRSIMNEAAGVPATARTGKVVRGEERAPRRAAG"
misc_feature complement(276448..276627)
/locus_tag="Gdia_0251"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene complement(276874..278319)
/locus_tag="Gdia_0252"
/db_xref="GeneID:6973644"
CDS complement(276874..278319)
/locus_tag="Gdia_0252"
/EC_number="3.4.11.1"
/note="PFAM: peptidase M17 leucyl aminopeptidase domain
protein;
KEGG: gdi:GDI2028 putative cytosol aminopeptidase"
/codon_start=1
/transl_table=11
/product="leucyl aminopeptidase"
/protein_id="YP_002274664.1"
/db_xref="GI:209542435"
/db_xref="InterPro:IPR000819"
/db_xref="GeneID:6973644"
/translation="MSIEEFPCLLPPTRGRRAGVRTIHALPQAELGTLGERIGATGAA
FARDTGFQARPGELALIPGANGVAAAVLGVRTGADGGAADPFQFGGLAGSLPPGAWKI
ALPDGVAPATAVLGFCLGAYRMPAFGRAEASPPGKDIARLIVPAGGGAGAEVAHAIRL
GRDLINTPPNLMGPAELARAARHMLNPLGARVETVKGRDLARAYPTIAHVGAGSARAP
KVVIARWQGSAAGPDAPLLSLVGKGVCFDTGGYDLKQPSGMLRMKKDMGGAAVMLSLA
HLILTRDLPIRLELRLGCVENSVSGEAMRPSDVVVTRSGLTVEIGNTDAEGRLVLCDL
LTDACAAAPDLLIDAATLTGAARVALGPDLPALFSPDDAVAQAILEAGTAQCDPLWRL
PLWDGYADWLRSPVADLNNVSAKPMAGSVTAALFLRNFVKTDVRWAHIDLYGWNDHYK
PGRPEGGETPILRAVYASLLRILNVADRVSH"
misc_feature complement(276898..278262)
/locus_tag="Gdia_0252"
/note="Leucyl aminopeptidase [Amino acid transport and
metabolism]; Region: PepB; COG0260"
/db_xref="CDD:30609"
misc_feature complement(276913..278220)
/locus_tag="Gdia_0252"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:48344"
misc_feature complement(order(276955..276957,277057..277059,
277063..277068,277096..277098,277102..277104,
277117..277122,277126..277128,277141..277143,
277147..277152,277228..277230,277237..277251,
277357..277359,277369..277371,277375..277377,
277393..277407,277411..277413,277417..277428,
277432..277434,277528..277533,277540..277542,
277549..277551,277564..277566,277582..277584,
277675..277677,277681..277683,277810..277818,
277822..277824,278074..278076,278110..278112,
278134..278136,278173..278178))
/locus_tag="Gdia_0252"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:48344"
misc_feature complement(order(277264..277266,277336..277338,
277342..277344,277348..277350,277525..277527,
277558..277560,277579..277581,277594..277596))
/locus_tag="Gdia_0252"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:48344"
misc_feature complement(order(277342..277344,277348..277350,
277525..277527,277579..277581,277594..277596))
/locus_tag="Gdia_0252"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:48344"
gene 278452..281124
/locus_tag="Gdia_0253"
/db_xref="GeneID:6973645"
CDS 278452..281124
/locus_tag="Gdia_0253"
/note="PFAM: helicase domain protein;
KEGG: gdi:GDI2029 putative helicase"
/codon_start=1
/transl_table=11
/product="helicase domain-containing protein"
/protein_id="YP_002274665.1"
/db_xref="GI:209542436"
/db_xref="InterPro:IPR001650"
/db_xref="GeneID:6973645"
/translation="MLGVPSGAGPLRAVRRSSNPMTAQRVRAILGPTNTGKTHLAIER
LLAHSSGIIGFPLRLLARENYERMVAAKGAASVALITGEEKIVPPNARWFSCTVEAMP
LDQMAEFVAVDEIQLCADPDRGHVFTDRLLHARGLVETMFLGAETIRPLLRRLVPGVE
IESRPRLSQLTHLGGSKLTRLPPRSAIVAFSATEVYAIAELIRRRRGGCAVVMGQLSP
RTRNAQVALYQDREVDYLVATDAIGMGLNMDVNHVAFAGLSKFDGARARPLSPAEIAQ
IAGRAGRGMRDGTFGTTGTCPALPDEIAEAVETHRFDPIERLFWRNSDLDFAGPDALL
ASLNRPPPTHGLTAGNEASDVMTLSSLASVPDIRALVRSSRATRLLWDACQIPDFRKL
GDETHTRLCARIFTHVIRDGHVPEAWMESQIAAFARPEGDIDSLMHRLSGIRVCSYIA
ARRDWVRDAARWQERARVVEDQLSDALHERLTARFVDRRAASLIRRLDESSGDDELLS
AVTSRGEVVVEGHPVGRVAGLDLLPDPDCDHPDRRLLLRAARRALRSEIPRRVRVLTA
ADDGEFDFSADGRFLVWDDAPIARLRGGEDMLRPRIEVLDNAFLDGVQRERVRARLAA
WLDRQVQDVMAPLFAARAAVEQDPALRGVMHRLMEQGGVVADVGPLSPVLRARLKTLG
VRVGRHAVLMPALLRPHAMRLRAILLAVRAGRPIPAIPSAGAVSVPVDDPRDLLLAPL
GWIVAGPVRLRLDIAEKMSAELRWRARNGPVPLPDGLSSRLGVRPEAVAAILKALDIP
VRAARPLKDSEYGPVAPPMLAVTQDARRRQRQQQQRTRPVPVEMDRPAGPATGFAVAD
RSRPAPRPGGERRPATHVPDGPFAALAVLKQRRS"
misc_feature <279010..279318
/locus_tag="Gdia_0253"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(279019..279030,279088..279093,279166..279174)
/locus_tag="Gdia_0253"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(279190..279192,279277..279279,279289..279291,
279298..279300)
/locus_tag="Gdia_0253"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 281121..281450
/locus_tag="Gdia_0254"
/db_xref="GeneID:6973646"
CDS 281121..281450
/locus_tag="Gdia_0254"
/note="PFAM: RNA-binding S4 domain protein;
KEGG: gdi:GDI2030 putative RNA-binding S4"
/codon_start=1
/transl_table=11
/product="RNA-binding S4 domain-containing protein"
/protein_id="YP_002274666.1"
/db_xref="GI:209542437"
/db_xref="InterPro:IPR002942"
/db_xref="GeneID:6973646"
/translation="MKEDRHPAASGADDAAIAAQRLDLWLWCARFARHRPDCARMAQD
GLVRINRQRTEKAHALVRRGDVLTLPGAGDHGVMVVRVLGLVPRRGSATLARLLYDIV
PEQAEAG"
misc_feature 281178..>281333
/locus_tag="Gdia_0254"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(281181..281183,281217..281222,281226..281231,
281235..281240,281247..281252,281256..281258,
281277..281300,281304..281306)
/locus_tag="Gdia_0254"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 281639..281971
/locus_tag="Gdia_0255"
/db_xref="GeneID:6973647"
CDS 281639..281971
/locus_tag="Gdia_0255"
/note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain
protein;
KEGG: gdi:GDI2031 putative ferredoxin"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_002274667.1"
/db_xref="GI:209542438"
/db_xref="InterPro:IPR000813"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:6973647"
/translation="MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCG
VCEPECPAEAIVPDSDDRAAAWAEINASYSAKWPNITRKGTAPADAEEWKDKPGKKDL
LSPEPHKD"
misc_feature 281663..281791
/locus_tag="Gdia_0255"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
misc_feature 281735..281803
/locus_tag="Gdia_0255"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:207738"
misc_feature 281834..281953
/locus_tag="Gdia_0255"
/note="Domain of unknown function (DUF3470); Region:
DUF3470; pfam11953"
/db_xref="CDD:204794"
gene complement(282164..282496)
/locus_tag="Gdia_0256"
/db_xref="GeneID:6973648"
CDS complement(282164..282496)
/locus_tag="Gdia_0256"
/note="TIGRFAM: cytochrome o ubiquinol oxidase subunit IV;
PFAM: cytochrome C oxidase subunit IV;
KEGG: gdi:GDI2032 putative cytochrome o ubiquinol oxidase
protein CyoD"
/codon_start=1
/transl_table=11
/product="cytochrome o ubiquinol oxidase subunit IV"
/protein_id="YP_002274668.1"
/db_xref="GI:209542439"
/db_xref="InterPro:IPR005171"
/db_xref="InterPro:IPR014210"
/db_xref="GeneID:6973648"
/translation="MADAHTAHSGSSHGSVGSYLTGFVISVVLTAAAFGVVMAHSFSP
SGTIAAIAILAAVQVVVHLVFFLHMNTSSEQRWNVMAFVFTVTAVLILIVGTVFIMHD
TAINMMSR"
misc_feature complement(282173..282442)
/locus_tag="Gdia_0256"
/note="cytochrome o ubiquinol oxidase subunit IV; Region:
CyoD; TIGR02847"
/db_xref="CDD:131894"
gene complement(282496..283101)
/locus_tag="Gdia_0257"
/db_xref="GeneID:6973649"
CDS complement(282496..283101)
/locus_tag="Gdia_0257"
/note="TIGRFAM: cytochrome o ubiquinol oxidase, subunit
III;
PFAM: cytochrome c oxidase subunit III;
KEGG: gdi:GDI2033 putative cytochrome o ubiquinol oxidase
subunit 3"
/codon_start=1
/transl_table=11
/product="cytochrome o ubiquinol oxidase subunit III"
/protein_id="YP_002274669.1"
/db_xref="GI:209542440"
/db_xref="InterPro:IPR000298"
/db_xref="InterPro:IPR014206"
/db_xref="GeneID:6973649"
/translation="MAHDITADAAHAHEEHHESPVVFGFWLYLMTDCLIFGTLFAVFA
VMRTQFAGGPTGKDLFELNGVGIETALLLVSSITYGFAMINAHKNKLGAMRGWLVLTF
LMGLGFLFMEIREFSHMVAEGNGPDRSAFLSSFFTLVGTHGLHVTCGLLWMAVLMVQS
MGQTVLSERMMNKLTCLSLFWHFLDIVWICVFTFVYLMSVI"
misc_feature complement(282508..283047)
/locus_tag="Gdia_0257"
/note="Ubiquinol oxidase subunit III subfamily. Ubiquinol
oxidase, the terminal oxidase in the respiratory chains of
aerobic bacteria, is a multi-chain transmembrane protein
located in the cell membrane. It catalyzes the reduction
of O2 and simultaneously...; Region:
Ubiquinol_oxidase_III; cd02863"
/db_xref="CDD:29487"
misc_feature complement(order(282976..282978,282985..282990,
282997..283002,283021..283023,283030..283032,
283042..283047))
/locus_tag="Gdia_0257"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29487"
misc_feature complement(order(282556..282558,282577..282579,
282865..282870,282880..282882,282889..282891,
283000..283002,283024..283026))
/locus_tag="Gdia_0257"
/note="Subunit III/IV interface [polypeptide binding];
other site"
/db_xref="CDD:29487"
gene complement(283101..285095)
/locus_tag="Gdia_0258"
/db_xref="GeneID:6973650"
CDS complement(283101..285095)
/locus_tag="Gdia_0258"
/EC_number="1.9.3.1"
/note="KEGG: gdi:GDI2034 ubiquinol oxidase subunit 1;
TIGRFAM: cytochrome o ubiquinol oxidase, subunit I;
PFAM: cytochrome c oxidase subunit I"
/codon_start=1
/transl_table=11
/product="cytochrome o ubiquinol oxidase subunit I"
/protein_id="YP_002274670.1"
/db_xref="GI:209542441"
/db_xref="InterPro:IPR000883"
/db_xref="InterPro:IPR014207"
/db_xref="GeneID:6973650"
/translation="MLGKLSWSDIPFDVPILVGTFAGVAIVGLAVLGLITYYGKWGYL
WKEWLTSVDHKRLGVMYIVLALLALARGFADAVMMRSQLALAYAGNPGYLPPHHYDQI
FSAHGTIMIFFMAMAFMSGLMNVIVPLQIGARDVAFPFVNSVSFWMTTISFVLINISL
FIGEFSQCGWLAYPPLSELQFSPGVGVDYYIWAVQLSGVGTLLTGINFFTTIVKMRAP
GMTFMKMPVFTWTILCNTVLIMVAFPFLTVALALLGLDRYFGMHFFTNDGGGNQMLYL
NLIWAWGHPEVYILVLPAFGAFSEITQTFSRKPLFGYNTMVYATCSIMGLSLVVWAHH
FFTMGAGANVNAFFGIMTMIIAIPTGVKIFNWLFTIYKGRVEFNGIMYWVIGFMVTFS
IGGMTGVMLAIPAADFVLHNSLFVIAHFHNVIIGGVYFGYVAAMAFWWPKAFGFKMNE
AWGKRAFWCWLVGFYMAFMPLYVLGFEGMTRRMNHYDNPAWHPWMVMASIGAAIVALG
VVCQLTQIYVSIRDRNLPESRDLTGDPWNARTLEWSTSSPPPFYNFAVVPTVHELDAF
AHDKEAGIDTRSAGATYQPIHMPKNTSAGFFIGVFSLILGFAAVWYIWWLAAVGLLGV
IGTLIARSSNNDVDYYVPAAEVARIENEHTRNLLAAQAAE"
misc_feature complement(283263..284984)
/locus_tag="Gdia_0258"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 1 [Energy production and conversion]; Region:
CyoB; COG0843"
/db_xref="CDD:31185"
misc_feature complement(283434..284954)
/locus_tag="Gdia_0258"
/note="Ubiquinol oxidase subunit I. Ubiquinol oxidase,
the terminal oxidase in the respiratory chains of aerobic
bacteria, is a multi-chain transmembrane protein located
in the cell membrane. It catalyzes the reduction of O2
and simultaneously pumps protons...; Region:
Ubiquinol_Oxidase_I; cd01662"
/db_xref="CDD:29933"
misc_feature complement(order(284463..284465,284475..284477,
284493..284498,284661..284663,284670..284672,
284691..284693,284721..284723,284913..284915))
/locus_tag="Gdia_0258"
/note="D-pathway; other site"
/db_xref="CDD:29933"
misc_feature complement(order(284787..284795,284802..284804,
284859..284864,284871..284873,284883..284885))
/locus_tag="Gdia_0258"
/note="Putative ubiquinol binding site [chemical binding];
other site"
/db_xref="CDD:29933"
misc_feature complement(order(283581..283583,283695..283697,
283821..283823,283833..283835,284778..284780))
/locus_tag="Gdia_0258"
/note="Low-spin heme (heme b) binding site [chemical
binding]; other site"
/db_xref="CDD:29933"
misc_feature complement(order(283653..283655,283860..283865,
283875..283877,284265..284270,284283..284285))
/locus_tag="Gdia_0258"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29933"
misc_feature complement(order(283839..283841,284094..284099,
284244..284246))
/locus_tag="Gdia_0258"
/note="Binuclear center (heme o3/CuB) [ion binding]; other
site"
/db_xref="CDD:29933"
misc_feature complement(order(284010..284012,284019..284021,
284094..284099,284199..284201,284232..284234,
284244..284246))
/locus_tag="Gdia_0258"
/note="K-pathway; other site"
/db_xref="CDD:29933"
misc_feature complement(order(283650..283655,283860..283865,
284094..284096))
/locus_tag="Gdia_0258"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29933"
gene complement(285101..286024)
/locus_tag="Gdia_0259"
/db_xref="GeneID:6973651"
CDS complement(285101..286024)
/locus_tag="Gdia_0259"
/note="TIGRFAM: ubiquinol oxidase, subunit II;
PFAM: cytochrome c oxidase subunit II; COX aromatic rich
domain protein;
KEGG: gdi:GDI2035 ubiquinol oxidase subunit 2 precursor"
/codon_start=1
/transl_table=11
/product="ubiquinol oxidase subunit II"
/protein_id="YP_002274671.1"
/db_xref="GI:209542442"
/db_xref="InterPro:IPR002429"
/db_xref="InterPro:IPR006333"
/db_xref="InterPro:IPR010514"
/db_xref="InterPro:IPR011759"
/db_xref="GeneID:6973651"
/translation="MKKKILPRLSNLLCLSSAFLLAGCDWVTLNPKGVIGVQEKSLIL
SATYAMLLVVVPVIVLTLLFAWQYRQSNTSAEYLPKWAHSNKIEVVIWLVPSLIILFL
AVLTYQTCHSLDPYRPIDDETNVKPIHVDVVALDWKWLFIYPDEGIATVNQMAFPVNT
PVDFRITSDSVMNSFFIPQLGSQVYAMAGMRTQLHLIANEAGNYLGESANFSGRGFSD
MQFRALAMSNDDYNAWVQKVKASSEQLDGSNYPKLAAPSEKNPVEYFSHVSSSFFDGI
VAKYNNGMIMDEGTGKLKPVQSAMSDMNMKE"
sig_peptide complement(285941..286024)
/locus_tag="Gdia_0259"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.991) with cleavage site probability 0.388 at
residue 28"
misc_feature complement(285104..285982)
/locus_tag="Gdia_0259"
/note="cytochrome o ubiquinol oxidase subunit II;
Provisional; Region: PRK10525"
/db_xref="CDD:182518"
misc_feature complement(285368..285643)
/locus_tag="Gdia_0259"
/note="Cytochrome C oxidase subunit II, periplasmic
domain; Region: COX2; cl11412"
/db_xref="CDD:209309"
misc_feature complement(285173..285310)
/locus_tag="Gdia_0259"
/note="COX Aromatic Rich Motif; Region: COX_ARM;
pfam06481"
/db_xref="CDD:203465"
gene complement(286672..287451)
/locus_tag="Gdia_0260"
/db_xref="GeneID:6973652"
CDS complement(286672..287451)
/locus_tag="Gdia_0260"
/note="PFAM: protein of unknown function UPF0005;
KEGG: gdi:GDI2037 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274672.1"
/db_xref="GI:209542443"
/db_xref="InterPro:IPR006214"
/db_xref="GeneID:6973652"
/translation="MAFSPDFRTMTRPAGAGTDAGAIDQGLRAYMLRVYNWMASGLVL
TGTVAYLVANTSLRAAFFAAVMTPSGVAVRPTGLGMLAMIAPLGFVLVMSLGVNRLSR
QAVQALFWLFCAVMGASLSSILLTFTGVSVVRVFFVTAGTFSAMSIWGYVTRTDLTRF
GSFLLMGLFGLVIAGLVNMFLHSSALYMLYSVVGVFIFVGLAAFDTQRIKMTYQQFAY
YEGPEGAAKRSVYDALTLYLNFINLFQFLLQFMGVRSNQDN"
misc_feature complement(286741..287376)
/locus_tag="Gdia_0260"
/note="Bacterial BAX inhibitor (BI)-1/YccA-like proteins;
Region: BI-1-like_bacterial; cd10432"
/db_xref="CDD:198414"
gene 287655..288194
/locus_tag="Gdia_0261"
/db_xref="GeneID:6973653"
CDS 287655..288194
/locus_tag="Gdia_0261"
/note="TIGRFAM: 2'-5' RNA ligase;
PFAM: Phosphoesterase HXTX;
KEGG: gdi:GDI2039 putative 2'-5' RNA ligase"
/codon_start=1
/transl_table=11
/product="2'-5' RNA ligase"
/protein_id="YP_002274673.1"
/db_xref="GI:209542444"
/db_xref="InterPro:IPR004175"
/db_xref="InterPro:IPR014051"
/db_xref="GeneID:6973653"
/translation="MRLFVAIEIVPPLRDAIASLRGSLAGVRWTDPLSYHLTLRFIGD
VRDRARQEDIHHALMAIRAPTCTLSPQGPGVFEQEGGLDRLWIGVARSDPLMHLQRKV
DTAIRRAAGLQVERRRFLPHVTIGSVARPPPPVMSAWLTQWGTVPPPPADATHFTLFR
SLRGPDQPLYDPLAEYPLG"
misc_feature 287655..288188
/locus_tag="Gdia_0261"
/note="2'-5' RNA ligase; Region: 2_5_ligase; TIGR02258"
/db_xref="CDD:162789"
misc_feature 287673..>287795
/locus_tag="Gdia_0261"
/note="LigT like Phosphoesterase; Region: LigT_PEase;
pfam02834"
/db_xref="CDD:202422"
gene 288539..290752
/locus_tag="Gdia_0262"
/db_xref="GeneID:6973654"
CDS 288539..290752
/locus_tag="Gdia_0262"
/note="TIGRFAM: PQQ-dependent dehydrogenase,
methanol/ethanol family;
PFAM: Pyrrolo-quinoline quinone;
KEGG: gdi:GDI2040 alcohol dehydrogenase [acceptor]
precursor"
/codon_start=1
/transl_table=11
/product="PQQ-dependent dehydrogenase"
/protein_id="YP_002274674.1"
/db_xref="GI:209542445"
/db_xref="InterPro:IPR001479"
/db_xref="InterPro:IPR002372"
/db_xref="InterPro:IPR009056"
/db_xref="InterPro:IPR017512"
/db_xref="GeneID:6973654"
/translation="MMRAVYGKRRSLRGTLAVGTICAATFFGYTAATSAAESEFGATG
EAIIHADDHPGDWLTYGRTYSEQRYSPLDQINRSNVGNLKLAWYYDLDTNRGQEGTPL
IVDGVMYATTNWSKMKALDAATGKLLWAYDPRVPGNIADKGCCDTVNRGAAYWNGKVY
FGTFDGRLIALDAKTGKLVWSVNTIPADAALGHQRSYTVDGAPRIAKGRVIIGNGGSE
FGARGFVSAFDAETGKLDWRFYTVPNAQNKPDNAPSDAVLMSKAYPTWSPTGAWTTQG
GGGTVWDSIVYDPVTDLVYLGVGNGSPWNYKFRSDGKGDNLFLGSIVALKPETGEYVW
HFQETPMDQWDYTSVQQIMTLDLPINGQTRHVIVHAPKNGFFYIIDAKTGEFLSGKNY
VYVNWASGLDPKTGRPIYNPDALYTLNGKEWYGIPGDLGGHNFAAMAFSPRTGLVYIP
AQQVPFLYTSQVGGFKPHPDSWNLGLDMNKVGVMDSPEAKQAFIKDLKGWIVAWDPVK
QQEAFRVDHKGPWNGGIVATGGDLLFQGLANGEFHAYDATNGADLFHFAAQSGIIAPP
VTYMANGKQYVAVEVGWGGIYPFFLGGLARTSGWTVNHSRVIAFSLDGAAKLPPQNDK
GFLPVKPPAQFDGKRTDNGYFEFQTFCAACHGDNAEAGGVLPDLRWSGAIRHQDAFYN
VVGRGALTAYGMDRFDASMKPEQIEDIRQFLIKRSNDTYQREVDARKNVDGIPAQ"
sig_peptide 288539..288646
/locus_tag="Gdia_0262"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.834 at
residue 36"
misc_feature 288656..290293
/locus_tag="Gdia_0262"
/note="PQQ-dependent dehydrogenase, methanol/ethanol
family; Region: PQQ_enz_alc_DH; TIGR03075"
/db_xref="CDD:211785"
misc_feature 288701..290395
/locus_tag="Gdia_0262"
/note="PQQ_like domain of the quinohemoprotein alcohol
dehydrogenase (type II); Region: PQQ_ADH_II; cd10279"
/db_xref="CDD:199837"
misc_feature order(288782..288790,288797..288799,288893..288895,
288899..288901,288908..288916,288923..288925,
289046..289048,289052..289054,289061..289069,
289076..289078,289217..289219,289223..289225,
289232..289240,289247..289249,289508..289510,
289514..289516,289523..289531,289538..289540,
289670..289672,289676..289678,289685..289693,
289700..289702,290045..290047,290051..290053,
290060..290068,290075..290077,290168..290170,
290174..290176,290183..290191,290198..290200,
290363..290365,290369..290371)
/locus_tag="Gdia_0262"
/note="Trp docking motif [polypeptide binding]; other
site"
/db_xref="CDD:199837"
misc_feature order(288818..288823,288947..288952,288956..288958,
289940..289942,289949..289954,290285..290287,
290300..290308,290345..290347)
/locus_tag="Gdia_0262"
/note="cytochrome domain interface [polypeptide binding];
other site"
/db_xref="CDD:199837"
misc_feature order(288830..288832,288968..288973,288980..288982,
288986..288988,289136..289138,289181..289192,
289376..289378,289382..289384,289436..289438,
289448..289450,289571..289573,289577..289579,
289652..289654,289823..289828,289838..289843,
289952..289954,290099..290101,290291..290296)
/locus_tag="Gdia_0262"
/note="active site"
/db_xref="CDD:199837"
misc_feature <290411..290677
/locus_tag="Gdia_0262"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature 290477..290677
/locus_tag="Gdia_0262"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene 290798..292210
/locus_tag="Gdia_0263"
/db_xref="GeneID:6973655"
CDS 290798..292210
/locus_tag="Gdia_0263"
/EC_number="1.1.99.3"
/note="PFAM: cytochrome c class I;
KEGG: gdi:GDI2041 putative alcohol dehydrogenase
cytochrome c subunit precursor"
/codon_start=1
/transl_table=11
/product="gluconate 2-dehydrogenase (acceptor)"
/protein_id="YP_002274675.1"
/db_xref="GI:209542446"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR003219"
/db_xref="InterPro:IPR008168"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:6973655"
/translation="MVNRMLNRLKVAIGTAAFSLLATSAMAQAPDQALIDKGAYVARL
GDCAACHTALHGQAYAGGLQIKSPIGTIYSTNITPDPTYGIGQYSFEDFEQAVRHGVR
KDGTTLYPAMPYPAFSRMTQDDLRALYAYLMHGVKPVANPDRPADISWPLSMRWPLSI
WRTLFAPAPADFKPAPGQDPVVARGEYLVTGPGHCGACHTPRGFGMEEKALDASGGAV
YLSGGAPIDNWVAPSLRDDPVTGIGRWSEDDVYYFLKSGRTDHAAVFGGMADVVAWST
QYFTDDDLRAMAKYLKSLPSVPASQGTYTYDASTTDMLNSGKTASSPGGDVYLRECAI
CHRNDGGGVARMFPPLAGNPVVVTDDPTSLVNVITNGGVLPPTNWAPSAVAMPAYGKT
LSSQQIADVVNFIRTGWGNHAPASVTAADVAKMRDTGAPVSSSGWNTSSSGWLVLHPQ
PYGAGWTFAPQTHSGVDQAQ"
sig_peptide 290798..290881
/locus_tag="Gdia_0263"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 1.000 at
residue 28"
misc_feature 291161..291679
/locus_tag="Gdia_0263"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature <291767..292075
/locus_tag="Gdia_0263"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature 291767..292012
/locus_tag="Gdia_0263"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
gene 292336..293076
/locus_tag="Gdia_0264"
/db_xref="GeneID:6973656"
CDS 292336..293076
/locus_tag="Gdia_0264"
/note="PFAM: Silent information regulator protein Sir2;
KEGG: gdi:GDI2042 putative NAD-dependent deacetylase"
/codon_start=1
/transl_table=11
/product="silent information regulator protein Sir2"
/protein_id="YP_002274676.1"
/db_xref="GI:209542447"
/db_xref="InterPro:IPR003000"
/db_xref="GeneID:6973656"
/translation="MERPLERPLERPWERIVVLTGAGISRESGLETFRDGDGLWSRYA
IEDVCTPHAFHRDPLLVDRFYNDRRAELWRVRPNDAHLALARLEHAARAGEWDGEILI
VTQNIDDLHERAGSRNVVHMHGELLRVRCTACGATPDWQENCLPQTPCPICHRPALRP
DVVWFGEIPLHMERIQAALDRCDRFVSIGTSGTVYPAAGFVAQVRDHADTLDINLEAP
AVPTAFERSMVGAATRMVPRWVDEVLAG"
misc_feature 292366..293070
/locus_tag="Gdia_0264"
/note="NAD-dependent deacetylase; Provisional; Region:
PRK00481"
/db_xref="CDD:179043"
misc_feature 292375..293055
/locus_tag="Gdia_0264"
/note="SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB;
and are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which...; Region:
SIRT5_Af1_CobB; cd01412"
/db_xref="CDD:29380"
misc_feature order(292402..292404,292408..292413,292432..292437,
292576..292578,292648..292653,292657..292659,
292702..292704,292900..292902,292915..292917,
292978..292983,293026..293028)
/locus_tag="Gdia_0264"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29380"
misc_feature order(292654..292656,292702..292704,292822..292824,
292828..292836,292837..292839,292912..292920)
/locus_tag="Gdia_0264"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29380"
misc_feature order(292726..292728,292735..292737,292783..292785,
292792..292794)
/locus_tag="Gdia_0264"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29380"
gene 293073..293744
/locus_tag="Gdia_0265"
/db_xref="GeneID:6973657"
CDS 293073..293744
/locus_tag="Gdia_0265"
/note="KEGG: gdi:GDI2043 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274677.1"
/db_xref="GI:209542448"
/db_xref="GeneID:6973657"
/translation="MTGNEDDLDALLCQVRACRACADSLPLGPRPILHVSSTARLLIA
SQAPGTRVHETGISFNDASGDRLRGWLEMDRATFYDSSRVALLPMGLCYPGRLPAGGD
RPPRPECAPLWRARLLALMPCIRLTLLVGSYAQAAVLGPGRVEDRVRNFRALLPHYFP
LPHPSWRTGAWERRNPWFTAEVIPALRAAIRPLLDPPSGRDGGPDDGQGQSLDPRRED
LHPDA"
misc_feature 293145..293645
/locus_tag="Gdia_0265"
/note="Uncharacterized subfamily of Uracil-DNA
glycosylases; Region: UDG_like_1; cd10033"
/db_xref="CDD:198431"
misc_feature order(293205..293213,293334..293336,293559..293561)
/locus_tag="Gdia_0265"
/note="putative uracil binding site [chemical binding];
other site"
/db_xref="CDD:198431"
misc_feature order(293208..293213,293217..293219,293463..293471,
293556..293561,293565..293567)
/locus_tag="Gdia_0265"
/note="putative active site [active]"
/db_xref="CDD:198431"
gene complement(293664..294395)
/locus_tag="Gdia_0266"
/db_xref="GeneID:6973658"
CDS complement(293664..294395)
/locus_tag="Gdia_0266"
/note="PFAM: multiple antibiotic resistance (MarC)-related
protein;
KEGG: gdi:GDI2044 putative multiple antibiotic resistance
protein MarC"
/codon_start=1
/transl_table=11
/product="multiple antibiotic resistance (MarC)-like
protein"
/protein_id="YP_002274678.1"
/db_xref="GI:209542449"
/db_xref="InterPro:IPR002771"
/db_xref="GeneID:6973658"
/translation="MPPGLPAAAPPGWGYDLSVFSDTFLLAFPALFSIVNPIGASLIF
TQVTAGRARAESLALARTVALYSAVLLIASIWIGSAILAFFGITIDSLRIAGGLVVAV
RAWALLQAPEEAAARKEQQALQGGRTVAVPRWTEMAFFPMTMPFTVGPGTISVAIALS
AGRPASSGWLVFYVALSLAAIVVAGTIWLAYAYAERLMALLGVTGARIVSRLAALILL
CIGVQILSAGIKGLALTIVRAAVAS"
misc_feature complement(293700..294350)
/locus_tag="Gdia_0266"
/note="MarC family integral membrane protein; Region:
MarC; cl00919"
/db_xref="CDD:186259"
gene complement(294470..296548)
/locus_tag="Gdia_0267"
/db_xref="GeneID:6973659"
CDS complement(294470..296548)
/locus_tag="Gdia_0267"
/note="KEGG: gdi:GDI2045 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274679.1"
/db_xref="GI:209542450"
/db_xref="InterPro:IPR002345"
/db_xref="GeneID:6973659"
/translation="MFLNRQDMQGAPPPSPPPGWRRLLRHVPHVLGLGLMVAAIIVVQ
HEVRDLHWDDIRAALRTIPTSTLALGVGCTVLSYFILSFYDCLAVVQVGRRLPFRRTA
FAAFCSYVLSHNLGFAAISGAAVRFRLYGNWGLCTFDIAQIIAFCSVTYLLGAGTLVG
AVLVLEPDAVPVIGAHLPRLLLSGIGLLMWAGVGAYILLGLRLTHVRVCRHTVVLPRP
AMALAQTLVATAEVAATAGIAYIFLPSGVGLGYGVFLAIYIASYTAGLVASVPGGLGV
FDGAMMLALGPYLPPSQIISTILIFRLFYYIIPLFLAGLMFAGHELFLRGDAALTRKT
VPRAPRRGPRDIRPSHVIRESEADFSVVVATGAVSICGALLIALTILDPASWSNAGGL
HHMVGVAGDYLLSLIGVALIGLAIGLSQRVTLAWKVTLGLLIGASALTLLRGASLAVP
GILAMVAILIAPFRSSYYRHARILSEPLAFRTFLSLVLLIGCVLVLVCSGPRDEVGGS
WWEVMLFTSAHGVAQWTMGLAVVLGLIMIGRLVRPGQIAVLPWNAEGRALYHALDHAL
DDPAPMAPSGLIPGESGMALLPFLRTDAYLIGLGDPAGAWDDCASAIWWLRDLAVQEG
RQPAFWRVGASMLDVYNDLGLTSWPVSDMDMARTDDGDDVFLCCVPQSVAGVRAAMRT
LAPPAPADGA"
misc_feature complement(295574..296491)
/locus_tag="Gdia_0267"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG0392"
/db_xref="CDD:30741"
misc_feature complement(295607..>295813)
/locus_tag="Gdia_0267"
/note="Uncharacterized protein family (UPF0104); Region:
UPF0104; pfam03706"
/db_xref="CDD:202732"
misc_feature complement(<294611..294826)
/locus_tag="Gdia_0267"
/note="Uncharacterized conserved protein (DUF2156);
Region: DUF2156; cl12090"
/db_xref="CDD:209441"
gene complement(296588..298210)
/gene="lysK"
/locus_tag="Gdia_0268"
/db_xref="GeneID:6973660"
CDS complement(296588..298210)
/gene="lysK"
/locus_tag="Gdia_0268"
/EC_number="6.1.1.6"
/note="class I; LysRS1; catalyzes a two-step reaction,
first charging a lysine molecule by linking its carboxyl
group to the alpha-phosphate of ATP, followed by transfer
of the aminoacyl-adenylate to its tRNA; in Methanosarcina
barkeri this enzyme charges both tRNA molecules for lysine
that exist in this organism (but the tRNALysUUU very
poorly) and in the presence of LysRS2 can charge tRNAPyl
with lysine"
/codon_start=1
/transl_table=11
/product="lysyl-tRNA synthetase"
/protein_id="YP_002274680.1"
/db_xref="GI:209542451"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002904"
/db_xref="GeneID:6973660"
/translation="MSEQNRTDPVSLPKAWPFEEAAKLAAHVEGKAGPADAPALLETG
YGPSGLPHIGTFGEVARTSWVCQAYTRLTGRPTRLLAFSDDMDALRKVPDNVPNGDML
RQHLGKPLSRIPDPFGTHESFAAHNNARLRSFLDGFGFTYEFASSTDYYTGGLFDAAL
RRVLEVHDEIVAVIAPTLGPDRRATYSPVLPIHPRTGMVMQVRMDAIDPAAGTVRWTD
DDGTVFETPVTGGHAKMQWKADWAMRWFALGVDYEMSGKDLIDSVKLSGKICRILGGQ
PPAGLTYELFLDENGQKISKSKGNGISVEEWLRYAPPESLGQYMFNAPQRAKRLFFDV
IPKAADEYLANVARAQALPDNDPALLSNPAWFIHGGPIGADAGSPLTFGMLLNLASVA
NAETPDVLWKFIRRYDAAASPETCQLLARLVDHAIVYYADFVRPAKTYRQPDARERAA
LSDLADSLRGLADGPSDPDTLQNLVFEIGKRHGFEPLRTWFGCLYEVLLGQTEGPRFG
IFIGLYGVAETVALIEAALLRPSVEAPAGGAG"
misc_feature complement(296630..298174)
/gene="lysK"
/locus_tag="Gdia_0268"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysK;
PRK00750"
/db_xref="CDD:179109"
misc_feature complement(297185..298171)
/gene="lysK"
/locus_tag="Gdia_0268"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature complement(order(297317..297328,298046..298057))
/gene="lysK"
/locus_tag="Gdia_0268"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(order(297323..297325,298046..298048,
298055..298057))
/gene="lysK"
/locus_tag="Gdia_0268"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(298046..298057)
/gene="lysK"
/locus_tag="Gdia_0268"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(297317..297328)
/gene="lysK"
/locus_tag="Gdia_0268"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene 298342..301350
/locus_tag="Gdia_0269"
/db_xref="GeneID:6973661"
CDS 298342..301350
/locus_tag="Gdia_0269"
/note="SMART: helicase c2;
KEGG: gdi:GDI2047 putative helicase"
/codon_start=1
/transl_table=11
/product="helicase c2"
/protein_id="YP_002274681.1"
/db_xref="GI:209542452"
/db_xref="InterPro:IPR006555"
/db_xref="InterPro:IPR014013"
/db_xref="GeneID:6973661"
/translation="MAAPLPSPDMPPALVARHGSCSLLTPDGEVLTLAAEEAVRELRA
WPAPLVVHAPLTARRLGLPPLPQPTPWLDLLELFTFVLPGRTIPPTVRGLAQALDLDD
ARIGAAEADLLPELADILLDRAAALRMTPAGEDMAALAIRMDRAGWAWGGSVLAALGA
AHPLPPEALQPGDAIRVWRRLPRWEDTAPRPAPANHPVSAADARRRLGEMLGPQAESR
AGQADFAGAASAAFAPRLVRGDPHMVLAEAGTGTGKTLGYVAPASLWAERNGGAVWIS
TYTRHLQRQIEGELSRLYPDPAVRRRHVVLRKGRENYLCLLNMEEAVNMAGSRGGPSG
AIIGLSLVARWAGATADGDLLGGDLPGWFGDLFGRGLLAGIADRRGECIHGACPHYQR
CFVEHSIRRAREADLVIANHALVMAQAAWHAMDGESGADEDNIPTRYVFDEGHHVMDA
ADSAFSTELSGLEAAELRRWLLGAEGARSRARGLKRRLDDLVVGQPRLEAPLEAVLQA
AHALPPPGWSARLADALHPVLEPVPQAGEDEAMPALAGPVPAAPVLADATLPNPCEWM
LHLLARQVLARSRANEPGHTGHRGGAIECDLHPLSDALPAAAAALARALDRLAVALRT
LVERLLERLEDDTGDLDSATRERIEAAVRTLRRRALSRVEGWVAMLRAIGGPEDGPGG
MAERGTPQHIDFIRLDRREGQRPGEQDVGLHRHWLDPTIPFAAVLAAPAHGILTTSAT
LRDENGRGDGDEAERAWEAAEARTGASHLPSPALRAAVASPFDYRRQSRAFIVNDVAH
DDIGALAGAYRTLFQAAGGGGLGLFTAISRLRAVHQRLSRPLEDAGIPLYAQHVDGMD
NATLVDIFRSEANSCLLGTDAMRDGVDVPGRSLRLVVFERVPWPRPDILHRERRTHLS
RGQPGEYDDRIARLRLRQAFGRLIRSSSDRGVFVLLDRRAPSRLLSAFPEGVAVRRAG
LGEVARDMESFLRGHENGEDGFPPSPSFTS"
misc_feature 299071..>299220
/locus_tag="Gdia_0269"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 299092..299106
/locus_tag="Gdia_0269"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature <300841..301101
/locus_tag="Gdia_0269"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(300892..300897,300964..300972)
/locus_tag="Gdia_0269"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(300988..300990,301057..301059,301069..301071,
301081..301083)
/locus_tag="Gdia_0269"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(301363..301566)
/locus_tag="Gdia_0270"
/db_xref="GeneID:6973662"
CDS complement(301363..301566)
/locus_tag="Gdia_0270"
/note="PFAM: Cold-shock protein DNA-binding;
SMART: Cold shock protein;
KEGG: gdi:GDI2048 putative cold-shock DNA-binding domain
protein"
/codon_start=1
/transl_table=11
/product="cold-shock DNA-binding domain-containing
protein"
/protein_id="YP_002274682.1"
/db_xref="GI:209542453"
/db_xref="InterPro:IPR002059"
/db_xref="InterPro:IPR011129"
/db_xref="GeneID:6973662"
/translation="MATGTVKWFNATKGFGFIMPEDGGKDVFVHITAVQAAGLRGLNE
NQRVSYDVVTERGKAAASNLKPL"
misc_feature complement(301369..301560)
/locus_tag="Gdia_0270"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein; Region:
CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature complement(order(301396..301398,301483..301485,
301516..301518,301543..301545))
/locus_tag="Gdia_0270"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:88424"
misc_feature complement(order(301477..301488,301507..301527))
/locus_tag="Gdia_0270"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene complement(301840..303483)
/gene="groEL"
/locus_tag="Gdia_0271"
/db_xref="GeneID:6973663"
CDS complement(301840..303483)
/gene="groEL"
/locus_tag="Gdia_0271"
/note="60 kDa chaperone family; promotes refolding of
misfolded polypeptides especially under stressful
conditions; forms two stacked rings of heptamers to form a
barrel-shaped 14mer; ends can be capped by GroES;
misfolded proteins enter the barrel where they are
refolded when GroES binds; many bacteria have multiple
copies of the groEL gene which are active under different
environmental conditions; the B.japonicum protein in this
cluster is expressed constitutively; in Rhodobacter,
Corynebacterium and Rhizobium this protein is essential
for growth"
/codon_start=1
/transl_table=11
/product="chaperonin GroEL"
/protein_id="YP_002274683.1"
/db_xref="GI:209542454"
/db_xref="InterPro:IPR001844"
/db_xref="InterPro:IPR002423"
/db_xref="InterPro:IPR012723"
/db_xref="GeneID:6973663"
/translation="MAAKDVKFGGDARQRMLRGVDILADAVKVTLGPKGRNVVLDKSF
GAPRITKDGVSVAKEIELADKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVRE
GAKAVAAGMNPMDLKRGIDKAVIAVVEELKKNTKKITTPAETAQVGTISANGEHEIGE
MISQAMQKVGSEGVITVEEAKGLHTELDVVEGMQFDRGYISPYFITNAEKMVADLDNP
YILIHEKKLSSLQPMLPLLESVVQSGRPLLIIAEDVDGEALATLVVNKLRGGLKIAAV
KAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLETVTLAMLGRAKKVRIEKENTTIVE
GAGASDDIKGRCGQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKER
KDRVDDALHATRAAVEEGIVPGGGTALARASTALGNLHFHNDDQRVGAEIIRKALQAP
LRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLVAAGIIDPTKVVRTALQDA
SSVAGLLITTEAMVAEKPEKKAPAMPAGGGMGGMGDMDF"
misc_feature complement(301930..303480)
/gene="groEL"
/locus_tag="Gdia_0271"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12849"
/db_xref="CDD:183791"
misc_feature complement(301930..303474)
/gene="groEL"
/locus_tag="Gdia_0271"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:48161"
misc_feature complement(order(301930..301935,301942..301944,
302107..302109,302326..302328,302332..302334,
302713..302715,302797..302799,302893..302895,
303256..303258,303265..303267,303277..303279,
303301..303303,303307..303309,303337..303339,
303343..303348,303361..303363,303367..303378,
303409..303411,303460..303462,303472..303474))
/gene="groEL"
/locus_tag="Gdia_0271"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:48161"
misc_feature complement(order(301996..301998,302002..302004,
302122..302124,302239..302241,302290..302292,
303034..303036,303211..303213,303223..303225,
303385..303393))
/gene="groEL"
/locus_tag="Gdia_0271"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:48161"
misc_feature complement(order(302083..302085,302092..302097,
302101..302103,302128..302130,302182..302184,
303157..303159))
/gene="groEL"
/locus_tag="Gdia_0271"
/note="stacking interactions; other site"
/db_xref="CDD:48161"
misc_feature complement(order(302254..302259,302359..302361,
302905..302907,302926..302928,303061..303063))
/gene="groEL"
/locus_tag="Gdia_0271"
/note="hinge regions; other site"
/db_xref="CDD:48161"
gene complement(303538..303828)
/gene="groES"
/locus_tag="Gdia_0272"
/db_xref="GeneID:6973664"
CDS complement(303538..303828)
/gene="groES"
/locus_tag="Gdia_0272"
/note="10 kDa chaperonin; Cpn10; GroES; forms
homoheptameric ring; binds to one or both ends of the
GroEL double barrel in the presence of adenine nucleotides
capping it; folding of unfolded substrates initiates in a
GroEL-substrate bound and capped by GroES; release of the
folded substrate is dependent on ATP binding and
hydrolysis in the trans ring"
/codon_start=1
/transl_table=11
/product="co-chaperonin GroES"
/protein_id="YP_002274684.1"
/db_xref="GI:209542455"
/db_xref="InterPro:IPR001476"
/db_xref="GeneID:6973664"
/translation="MTNFRPLHDRVVVRRLTGEEKTAGGIIIPDTAKEKPMEGEVISA
GPGARNEQGQIVALDVKAGDKVLFGKWSGTEVKINGEELLIMKESDIMGVIA"
misc_feature complement(303544..303822)
/gene="groES"
/locus_tag="Gdia_0272"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:73192"
misc_feature complement(order(303547..303555,303601..303603,
303607..303609,303622..303624,303652..303654,
303715..303720,303799..303801,303808..303810,
303814..303816,303820..303822))
/gene="groES"
/locus_tag="Gdia_0272"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:73192"
misc_feature complement(303733..303774)
/gene="groES"
/locus_tag="Gdia_0272"
/note="mobile loop; other site"
/db_xref="CDD:73192"
misc_feature complement(order(303658..303660,303691..303693))
/gene="groES"
/locus_tag="Gdia_0272"
/note="roof hairpin; other site"
/db_xref="CDD:73192"
gene 304097..304357
/locus_tag="Gdia_0273"
/db_xref="GeneID:6973665"
CDS 304097..304357
/locus_tag="Gdia_0273"
/note="PFAM: Usg family protein;
KEGG: gdi:GDI2052 putative Usg-like protein"
/codon_start=1
/transl_table=11
/product="Usg family protein"
/protein_id="YP_002274685.1"
/db_xref="GI:209542456"
/db_xref="InterPro:IPR009354"
/db_xref="GeneID:6973665"
/translation="MTLRLQLHDYRLTTAEILYRLPDHPVLLQTYIWQDLDIAPAYPE
LRRFLDFWTRSIEGRLHSVRVAQQGLIAAPAIRHAGTCLTLH"
misc_feature 304109..304354
/locus_tag="Gdia_0273"
/note="Usg-like family; Region: Usg; cl11567"
/db_xref="CDD:159547"
gene complement(304362..304562)
/locus_tag="Gdia_0274"
/db_xref="GeneID:6973666"
CDS complement(304362..304562)
/locus_tag="Gdia_0274"
/note="KEGG: gdi:GDI2053 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274686.1"
/db_xref="GI:209542457"
/db_xref="GeneID:6973666"
/translation="MAEIVNLRQARKRKARADKARDAAENRALHGRTLSERARRKQEA
ERAARTLDGARLDPDPGEPGRD"
misc_feature complement(304395..304559)
/locus_tag="Gdia_0274"
/note="Domain of unknown function (DUF4169); Region:
DUF4169; pfam13770"
/db_xref="CDD:205943"
gene 304606..305268
/locus_tag="Gdia_0275"
/db_xref="GeneID:6973667"
CDS 304606..305268
/locus_tag="Gdia_0275"
/EC_number="3.1.1.45"
/note="PFAM: dienelactone hydrolase;
KEGG: gdi:GDI2054 dienelactone hydrolase"
/codon_start=1
/transl_table=11
/product="carboxymethylenebutenolidase"
/protein_id="YP_002274687.1"
/db_xref="GI:209542458"
/db_xref="InterPro:IPR002925"
/db_xref="GeneID:6973667"
/translation="MGTITSLTASDGHTLSAYLAGPADASRALVVVQEIFGVNTHIRA
VCDGFAADGYRVIAPALFDRAERDVELAYDSDGVQTGLRLRAAIAPEETLLDLTAAAR
ALGLARIGIIGYCWGGTLAWLAACRTDLFAAAVGWYGAGIAAQKDLTPHCPVELHFGE
TDGSIPMSDIAAIRAAHPEVTIFTYPDAGHGFGCSERDSFNAQAASLARTRSLAFFEK
NL"
misc_feature 304606..305265
/locus_tag="Gdia_0275"
/note="Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism]; Region: COG0412"
/db_xref="CDD:30761"
gene complement(305275..306192)
/locus_tag="Gdia_0276"
/db_xref="GeneID:6973668"
CDS complement(305275..306192)
/locus_tag="Gdia_0276"
/note="Catalyzes the reversible phosphorolysis of
5'-deoxy-5'- methylthioadenosine (MTA) to adenine and
5-methylthio-D-ribose-1- phosphate"
/codon_start=1
/transl_table=11
/product="5'-methylthioadenosine phosphorylase"
/protein_id="YP_002274688.1"
/db_xref="GI:209542459"
/db_xref="InterPro:IPR001369"
/db_xref="InterPro:IPR010044"
/db_xref="GeneID:6973668"
/translation="MSINPAPSPSDADVIEPVIGLIGGSGLYDIDGLEEKEWRTVETP
WGLPSDQLLFGRLDGVRCVFLPRHGRGHPIPPSRLNYRANIAALKQSGVTDIVSLSAV
GSLKEELPPGHFVIIDQFIDRSFAREKSFFDTGCVAHVSMADPLCPRIGDALEETARG
LGLDVTRGGTYLVMEGPQFSTRAESNLYRSWGCSVVGMTNMPEAKLAREAEICYATVA
MVTDYDCWHPDHDSVTVDAVVKVMLSNADRARALVKSVIPALGSPRGPCRAGCDRALE
HALITAPDRRDPALLAKLQSVAGRVLARG"
misc_feature complement(305287..306150)
/locus_tag="Gdia_0276"
/note="5'-methylthioadenosine phosphorylase; Provisional;
Region: PRK08931"
/db_xref="CDD:181584"
gene complement(306182..306943)
/locus_tag="Gdia_0277"
/db_xref="GeneID:6973669"
CDS complement(306182..306943)
/locus_tag="Gdia_0277"
/note="PFAM: cytochrome c1;
KEGG: gdi:GDI2056 putative cytochrome c"
/codon_start=1
/transl_table=11
/product="cytochrome c1"
/protein_id="YP_002274689.1"
/db_xref="GI:209542460"
/db_xref="InterPro:IPR002326"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:6973669"
/translation="MKKILVAPLAAALCLAAPAVHAAPHAPAPHQDWSFDGPLGRFDM
AAVQRGYAVYAQVCSACHSMNAVTYGDLGAMGLTDEQVRQIAAAQSVPGGVDAQGEPV
TRPATAADHFRNPFPSPEAAAAANNGTPPPDQSRLALVYTGGPDRIYALLTGYRTPPA
GYRPSHPGAFYNPYAADGEISMPPPLHDGLVDYADGTPATTAQEARDVTTFLAWVAQP
HLAERHRLGIQVTLYLLFLAVLAFLLKRRIWSDVH"
sig_peptide complement(306875..306943)
/locus_tag="Gdia_0277"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 1.000 at
residue 23"
misc_feature complement(306188..306847)
/locus_tag="Gdia_0277"
/note="Cytochrome C1 family; Region: Cytochrom_C1;
pfam02167"
/db_xref="CDD:190231"
misc_feature complement(<306686..306811)
/locus_tag="Gdia_0277"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene complement(306940..308193)
/locus_tag="Gdia_0278"
/db_xref="GeneID:6973670"
CDS complement(306940..308193)
/locus_tag="Gdia_0278"
/note="PFAM: Cytochrome b/b6 domain;
KEGG: gdi:GDI2057 putative cytochrome b"
/codon_start=1
/transl_table=11
/product="Cytochrome b/b6 domain"
/protein_id="YP_002274690.1"
/db_xref="GI:209542461"
/db_xref="InterPro:IPR005797"
/db_xref="InterPro:IPR005798"
/db_xref="GeneID:6973670"
/translation="MTDSGSGDATDQRGGTGVLAWVDARLPVVTGFRHEYIDYRTPRN
LNGLWNFGAILTVVLLVMLATGIFLAVNYTPTAAGAFASVEAIERQLPSGWLLRSIHV
TGASLFLAALYIHLFRGLYYGSYKRPREILWLTGLLLLVMVMFTAFAGYVLPWGQMSY
WGADVAGKAVDAIPFVGPWLEHFLQGGDAPGDVSLHRFFVLHFVLAFAVLGVVVLHVA
ALHVTGSNNPLGIEPKGPRDTLTFHPYYTSKDALGMILFALLFAALVFFLPHVVFEAE
NFRPANPLHTPADIEPEWYFLPFYGMLQSVPSKFGGLLAAVGSILILFLVPWLDRSPI
RSARFRPFYRVCMVLLVLCFILLGFVGRHHAEGGWMIAGRIALVYYFAHFLVLLPLSA
RTERHVVLPESIAAAQGHHATGHDA"
misc_feature complement(307033..308115)
/locus_tag="Gdia_0278"
/note="cytochrome b; Provisional; Region: CYTB; MTH00145"
/db_xref="CDD:177203"
misc_feature complement(307618..308100)
/locus_tag="Gdia_0278"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cd00284"
/db_xref="CDD:29347"
misc_feature complement(order(308026..308028,308035..308037,
308086..308091))
/locus_tag="Gdia_0278"
/note="Qi binding site; other site"
/db_xref="CDD:29347"
misc_feature complement(order(307672..307674,307696..307701,
307711..307731,307741..307743,307771..307776,
307783..307785,307792..307797,307804..307809,
307819..307836,307855..307857,307864..307869,
307873..307878,307882..307887,307894..307899,
307906..307908,307951..307953,308023..308025,
308032..308037,308044..308049,308065..308073,
308083..308088))
/locus_tag="Gdia_0278"
/note="intrachain domain interface; other site"
/db_xref="CDD:29347"
misc_feature complement(order(307810..307812,307894..307896,
307903..307911,307915..307929,307936..307941,
307948..307953,307978..307983,307990..307992,
308002..308004,308065..308067,308074..308076,
308080..308085))
/locus_tag="Gdia_0278"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29347"
misc_feature complement(order(307774..307779,307783..307788,
307795..307800,307840..307842,307846..307851,
307858..307860,307870..307872,308026..308031,
308035..308040,308047..308049))
/locus_tag="Gdia_0278"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature complement(order(307732..307737,307741..307746,
307753..307758,307879..307881,307888..307893,
307900..307902,307942..307944,307975..307977,
307984..307989,307993..307998,308005..308010,
308017..308019))
/locus_tag="Gdia_0278"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature complement(order(307684..307686,307696..307701,
307708..307710,307747..307752,307759..307764,
307771..307773))
/locus_tag="Gdia_0278"
/note="Qo binding site; other site"
/db_xref="CDD:29347"
misc_feature complement(307096..307515)
/locus_tag="Gdia_0278"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cd00290"
/db_xref="CDD:29371"
misc_feature complement(order(307174..307179,307192..307197,
307357..307362,307369..307371,307387..307389,
307393..307398,307405..307410,307417..307419,
307426..307431,307438..307440,307447..307452,
307456..307464,307471..307494,307501..307503,
307507..307515))
/locus_tag="Gdia_0278"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29371"
misc_feature complement(order(307204..307206,307210..307218,
307222..307227,307234..307236,307264..307266,
307309..307320,307324..307326,307333..307341,
307345..307359,307363..307368,307372..307374,
307387..307389,307396..307404,307408..307413,
307423..307425,307432..307437,307444..307449,
307456..307458,307468..307470,307474..307482,
307489..307491,307510..307515))
/locus_tag="Gdia_0278"
/note="intrachain domain interface; other site"
/db_xref="CDD:29371"
misc_feature complement(order(307444..307446,307468..307470))
/locus_tag="Gdia_0278"
/note="Qi binding site; other site"
/db_xref="CDD:29371"
misc_feature complement(order(307246..307248,307294..307299,
307306..307308,307315..307320,307324..307326))
/locus_tag="Gdia_0278"
/note="Qo binding site; other site"
/db_xref="CDD:29371"
gene 308333..309235
/locus_tag="Gdia_0279"
/db_xref="GeneID:6973671"
CDS 308333..309235
/locus_tag="Gdia_0279"
/EC_number="1.3.3.3"
/note="catalyzes the conversion of the propionic acid
groups of rings I and III to vinyl groups during heme
synthesis"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_002274691.1"
/db_xref="GI:209542462"
/db_xref="InterPro:IPR001260"
/db_xref="GeneID:6973671"
/translation="MPETRAPVPHDLLKAEASTWFEGLRDRICAAFERIEQDADSVQA
LPGHAAPGAFQRTAWDRTNDDGTPGGGGVISLMRGRVFEKVGVNVSTVEGTFSPEFRA
SIPGAAEDPRFFATGISLVAHMCNPLVPAAHFNTRLIVTTQGWFGGGGDITPMFPDSA
EAQADAARFHAGFRAACDRHDPTYYPRFKEWCDRYFFLPHRGEARGLGGIFYDRLNSG
DEAADFAFTRDVGLAFLETYPAIVRHRMGERWTAHQREAQLVRRGRYVEFNLLHDRGT
LFGLKTGGNTEAILMSLPPEVRWP"
misc_feature 308372..309232
/locus_tag="Gdia_0279"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK05330"
/db_xref="CDD:180020"
gene 309396..310490
/locus_tag="Gdia_0280"
/db_xref="GeneID:6973672"
CDS 309396..310490
/locus_tag="Gdia_0280"
/note="KEGG: gdi:GDI2059 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274692.1"
/db_xref="GI:209542463"
/db_xref="InterPro:IPR006311"
/db_xref="GeneID:6973672"
/translation="MTMRRRHFLATAGLALLAGLPPARAARGLTRIADIVPAGGTIAD
PTLLVAGNADSVAGKWGTVLSPALAQGLDAPRPVSMHLTSGQDGVTGANLFDTQTVPD
GTTALLVPGAALVASLAGDPRAHFDFGRWVPLMLSLVSPVVVGRAELHRTFRDLMRDR
PVRIAVSADTGVELATVLAMALFGLRPIPVAGFASRQDALAALRDGKVDVVQVSDPMS
PQALAAMFDTLGQSGAAPLFTLSDTVRMTAQGHTVPTLAERFAQERGHPPDGLLYEAW
KVVAAAASLDVALVLPMLTPPAQVAGWRHAMATADAHGAVDTLMNGNGRKLVTGTDCA
PHLRDMTGETSAVLTLRRWLASHAPNWRLG"
sig_peptide 309396..309473
/locus_tag="Gdia_0280"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.868 at
residue 26"
gene complement(310496..311281)
/locus_tag="Gdia_0281"
/db_xref="GeneID:6973673"
CDS complement(310496..311281)
/locus_tag="Gdia_0281"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: gdi:GDI2060 putative iron ABC transporter
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_002274693.1"
/db_xref="GI:209542464"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6973673"
/translation="MSGLTAAHVTVRYGRRTVLDDLSVGPLPAGQVSALLGPNGSGKS
TLLRALAGLERTGATVRCGEAELSRMRPALRARHCVYLPQALPPAVHLQVLESVIAAR
RAAAPAGDWEDDEVSEALDVLARLGVDDLALRYMDELSGGQRQLVGLAQALVRRPAVL
LLDEPLSALDLHHQFSVMQVVRRETRARNMVTVVVLHDLNIALQQADYVVMLRQGVIV
GAGTPRHVITTQTLQQVYGVRARVESCSLGRPHVVVDGVEAGP"
misc_feature complement(310520..311272)
/locus_tag="Gdia_0281"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:31317"
misc_feature complement(310619..311269)
/locus_tag="Gdia_0281"
/note="ABC transporters, involved in the uptake of
siderophores, heme, and vitamin B12, are widely conserved
in bacteria and archaea. Only very few species lack
representatives of the siderophore family transporters.
The E. coli BtuCD protein is an ABC...; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:72973"
misc_feature complement(311150..311173)
/locus_tag="Gdia_0281"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(order(310691..310693,310790..310795,
311030..311032,311147..311155,311159..311164))
/locus_tag="Gdia_0281"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72973"
misc_feature complement(311030..311041)
/locus_tag="Gdia_0281"
/note="Q-loop/lid; other site"
/db_xref="CDD:72973"
misc_feature complement(310838..310867)
/locus_tag="Gdia_0281"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72973"
misc_feature complement(310790..310807)
/locus_tag="Gdia_0281"
/note="Walker B; other site"
/db_xref="CDD:72973"
misc_feature complement(310772..310783)
/locus_tag="Gdia_0281"
/note="D-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(310685..310705)
/locus_tag="Gdia_0281"
/note="H-loop/switch region; other site"
/db_xref="CDD:72973"
gene complement(311278..312393)
/locus_tag="Gdia_0282"
/db_xref="GeneID:6973674"
CDS complement(311278..312393)
/locus_tag="Gdia_0282"
/note="PFAM: transport system permease protein;
KEGG: gdi:GDI2061 putative vitamin B12 import system
permease protein BtuC"
/codon_start=1
/transl_table=11
/product="transport system permease"
/protein_id="YP_002274694.1"
/db_xref="GI:209542465"
/db_xref="InterPro:IPR000522"
/db_xref="InterPro:IPR002155"
/db_xref="GeneID:6973674"
/translation="MTDTTLTRPRAVRSGPVDPALLTAERVRHVRDSYRHLLRRRSLI
LAVLTVLILMSMLLDFALGPSGLSPATLLRVLLHPHDVPAGQSVIVWQIRLPYALMAV
CVGAALGLSGAEMQTILNNPLASPFTLGVSAAAAFGASLAIVLQWQIPGVPAEWVVSA
DAFAFAIGSAFLLDLVSCLRDASTSTVVLFGIALVFTFHALVSLVQFVASEDALQDLV
FWTMGSLTRSNWSKVGILASVCAVILPLSFRSAWSLTALRMGEERAASFGVDVRRVRI
GSLLRISILSSLAVSFVGTIGFVGLVAPHIARGLLGEDHRFYLPGSVLVGCLIMSLSS
VAARNVLPGVIVPVGIVTALVGIPFFLAIVLRRRVAS"
misc_feature complement(311290..312279)
/locus_tag="Gdia_0282"
/note="ABC-type enterobactin transport system, permease
component [Inorganic ion transport and metabolism];
Region: FepG; COG4779"
/db_xref="CDD:34391"
misc_feature complement(311302..312099)
/locus_tag="Gdia_0282"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(311449..311451,311470..311472,
311593..311601,311605..311622,311626..311631,
311635..311643,311647..311652,312028..312036,
312046..312048))
/locus_tag="Gdia_0282"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(311302..311304,311311..311316,
311323..311325,311332..311337,311344..311346,
311500..311502,311728..311730,311737..311742,
311776..311778,311782..311787,311794..311796,
311803..311808,311815..311820,311827..311832,
311836..311838,312010..312012,312025..312027,
312031..312033))
/locus_tag="Gdia_0282"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(311353..311355,311380..311382,
311512..311514,311524..311526,311698..311700,
311776..311778))
/locus_tag="Gdia_0282"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(312390..313541)
/locus_tag="Gdia_0283"
/db_xref="GeneID:6973675"
CDS complement(312390..313541)
/locus_tag="Gdia_0283"
/note="PFAM: periplasmic binding protein;
KEGG: gdi:GDI2062 periplasmic binding protein"
/codon_start=1
/transl_table=11
/product="periplasmic-binding protein"
/protein_id="YP_002274695.1"
/db_xref="GI:209542466"
/db_xref="InterPro:IPR002491"
/db_xref="GeneID:6973675"
/translation="MKAKSPRKHGHCRLWRTVAGLAAAVAMMAAGGTRAATITDLAGR
SVDIPAHVHRIILGEGRLIYALAPLEKSHLFDRIVGWQGEFRDADVQSYDKYVATFPA
AAKVALIGKTTADTISPEKVLDLRPDLAILSVSGHGPAASSELVAQLQSAHVPVVFVD
FRAHPLDDTVPSMRILGAVLDRRAEAEAYIAFYQAHLDRIRTRVATLPQSARPTVFLE
MLAGTRDSCCHTAGNGNMGAFIDAAGGRNIAAPLLPGYIGDIALEQVIAANPDIYIVD
GTKGPAYQGLGVHMGAETDPASARASVQAVLQRPGISTLSAVKDGHAYGLWHSFYDSP
YNILAVEVMAKWFHPDLFRDVDPEATRTELYARFLPVPNSGTYWVSDTP"
sig_peptide complement(313434..313541)
/locus_tag="Gdia_0283"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.991 at
residue 36"
misc_feature complement(312402..313430)
/locus_tag="Gdia_0283"
/note="ferrichrome/ferrioxamine B periplasmic transporter;
Provisional; Region: PRK14048"
/db_xref="CDD:172540"
misc_feature complement(312408..313430)
/locus_tag="Gdia_0283"
/note="Periplasmic binding protein TroA_f. These proteins
are predicted to function as initial receptors in the ABC
metal ion uptake in eubacteria and archaea. They belong
to the TroA superfamily of helical backbone metal receptor
proteins that share a...; Region: TroA_f; cd01139"
/db_xref="CDD:29742"
misc_feature complement(order(312816..312818,312927..312929,
313140..313142,313146..313148,313203..313205,
313287..313289,313359..313364))
/locus_tag="Gdia_0283"
/note="putative ligand binding residues [chemical
binding]; other site"
/db_xref="CDD:29742"
gene complement(313695..314285)
/locus_tag="Gdia_0284"
/db_xref="GeneID:6973676"
CDS complement(313695..314285)
/locus_tag="Gdia_0284"
/note="PFAM: Smr protein/MutS2;
KEGG: gdi:GDI2063 putative small MutS related protein"
/codon_start=1
/transl_table=11
/product="Smr protein/MutS2"
/protein_id="YP_002274696.1"
/db_xref="GI:209542467"
/db_xref="InterPro:IPR002625"
/db_xref="GeneID:6973676"
/translation="MRRRRTLREDEQALWTAFVRDIKPLARKAAAGNPAGAPEPAPVP
DVVPSPVRGRRAAPLAAGSPQPAPLQPRVPAYTLHRSQASVEIGERRPGLDDTSWRAL
VSGKLRPTRTLDLHGQNVQAAFQRLHAFLVQARADNLRCVEVITGLGSGRQGGVLRRE
LPFWLGRPDLRPLILAVTHPHAANQGSVRILLRRRG"
misc_feature complement(313701..314285)
/locus_tag="Gdia_0284"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2840"
/db_xref="CDD:32668"
misc_feature complement(313707..313949)
/locus_tag="Gdia_0284"
/note="Smr domain; Region: Smr; pfam01713"
/db_xref="CDD:201932"
gene complement(314367..315788)
/locus_tag="Gdia_0285"
/db_xref="GeneID:6973677"
CDS complement(314367..315788)
/locus_tag="Gdia_0285"
/EC_number="1.11.1.5"
/note="PFAM: Di-haem cytochrome c peroxidase;
KEGG: gdi:GDI2064 putative cytochrome c551 peroxidase
precursor"
/codon_start=1
/transl_table=11
/product="cytochrome-c peroxidase"
/protein_id="YP_002274697.1"
/db_xref="GI:209542468"
/db_xref="InterPro:IPR004852"
/db_xref="InterPro:IPR009056"
/db_xref="InterPro:IPR011031"
/db_xref="GeneID:6973677"
/translation="MSVRKLVLSVAALGCVAYGGTVGYLTHFDHDTAPTLGTNSPTLA
DPVASAAFAAIRESRCDYCHARNTDLPFYFHVPVANQLMQRDVDQGLRHFRIEPVLAA
FQSGAVPSEEQLARIEEVVRQNRMPPTLYLLLHWHAHLSQAQRDALLTWIAAERRAHY
ATPGVAPRFAAEPVQPVPETLPVDAAKVALGQRLFFDKQLSGDGTLNCASCHALDHGG
VDGRVTALGIDNRHGPINVPTVYDAAFNQSQFWNGRAATLADQAAGPVMNPLEMGSHD
WTGVADKLKQDPTYLTAFQGVFGSDEITRDRITDAIAEYEKTLITPDSRFDRYLKGDD
QALNAQEKNGYALFKSVGCSGCHTGVSLGGQAFEAMGLEGDYFAARGGTLTDADKGRY
MVTHSDADMERFKVPNLRNIALTAPYFHDGSVKTLDQAVREMARYQTPDHDLSDHDVA
DIVAFLQTLTGTYQGHQLAETTH"
sig_peptide complement(315729..315788)
/locus_tag="Gdia_0285"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.978) with cleavage site probability 0.820 at
residue 20"
misc_feature complement(315321..315743)
/locus_tag="Gdia_0285"
/note="Haem-binding domain; Region: Haem_bd; pfam14376"
/db_xref="CDD:206544"
misc_feature complement(314379..315413)
/locus_tag="Gdia_0285"
/note="Cytochrome c peroxidase [Inorganic ion transport
and metabolism]; Region: MauG; COG1858"
/db_xref="CDD:32043"
gene complement(315903..316718)
/locus_tag="Gdia_0286"
/db_xref="GeneID:6973678"
CDS complement(315903..316718)
/locus_tag="Gdia_0286"
/note="PFAM: DNA methylase N-4/N-6 domain protein;
KEGG: gdi:GDI2065 putative modification methylase MjaV"
/codon_start=1
/transl_table=11
/product="DNA methylase N-4/N-6 domain-containing protein"
/protein_id="YP_002274698.1"
/db_xref="GI:209542469"
/db_xref="InterPro:IPR001091"
/db_xref="InterPro:IPR002295"
/db_xref="InterPro:IPR002941"
/db_xref="GeneID:6973678"
/translation="MTAARAPRTLRYAIGPHQLVRGDCLRVLRRMDADSVDVVVTSPP
YNIGLGYRTYSDRMSETQYLDWMMAVARELHRVMRPDGSFFLNIAGSSAQPWIPFELA
VRLREIFHLQNHISWIKSVSVNEDTFGHFKPVNSARYLHRNHEHLFHLTRSGTVELNR
LDIGVPYKDKSNIARRGHEQDRRCRGDTWFIPYETVQGKAQKFNHPGTFPVQLPRMCI
RLHGRPGAVVLDPFMGTGTTLVAAQEEGARAIGIDLDTAYVTVARDRLTQAMK"
misc_feature complement(315915..316670)
/locus_tag="Gdia_0286"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature complement(315933..316613)
/locus_tag="Gdia_0286"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(316715..317932)
/locus_tag="Gdia_0287"
/db_xref="GeneID:6973679"
CDS complement(316715..317932)
/locus_tag="Gdia_0287"
/note="PFAM: MltA domain protein; 3D domain protein;
KEGG: gdi:GDI2066 putative membrane-bound lytic murein
transglycosylase A precursor"
/codon_start=1
/transl_table=11
/product="MltA domain-containing protein"
/protein_id="YP_002274699.1"
/db_xref="GI:209542470"
/db_xref="InterPro:IPR005300"
/db_xref="InterPro:IPR010611"
/db_xref="GeneID:6973679"
/translation="MSHSFVTKILRGASAGAILLLSACAATDLEGTGQPLAFSDIKGW
GSDEAVRALPVFLGECRYLGRLPADAGLGADSGRGTHVGDWLPACRAAAALPTGDAPA
ARQFFETWFQPVLTAGQALFTGYYEPEIRGSLSRGGVYQTPVYGVPDDLVRTRATDGR
MVTGRWQGSQFMPYWTRAQIDAGALAGRNLELLWVADPADLFFLQIQGSGRVRLPSGQ
VVRLGFGAKNGQEYVPLGRVLVRQGEMDADAVSMQSIRAWLTAHPDQARTVMEDNPNY
VFFTVLDHVYADQGAPGALGVPLTPGRSVAVDRRSIPLASPVWVETTLPGPAGSSWQR
LVFAQDTGTDIQGPARADLFMGWGPDAEQTAGAMQQRGRTITFVPRPVVVMEPASMGA
APTAKIVGIAGEP"
sig_peptide complement(317855..317932)
/locus_tag="Gdia_0287"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.717 at
residue 26"
misc_feature complement(317096..317548)
/locus_tag="Gdia_0287"
/note="MltA specific insert domain; Region: MltA;
smart00925"
/db_xref="CDD:197993"
misc_feature complement(316814..317026)
/locus_tag="Gdia_0287"
/note="3D domain; Region: 3D; pfam06725"
/db_xref="CDD:203506"
gene complement(317994..318674)
/locus_tag="Gdia_0288"
/db_xref="GeneID:6973680"
CDS complement(317994..318674)
/locus_tag="Gdia_0288"
/note="PFAM: import inner membrane translocase subunit
Tim44;
KEGG: gdi:GDI2067 putative transporter protein"
/codon_start=1
/transl_table=11
/product="import inner membrane translocase subunit Tim44"
/protein_id="YP_002274700.1"
/db_xref="GI:209542471"
/db_xref="InterPro:IPR007379"
/db_xref="GeneID:6973680"
/translation="MDFSFSHFPFDLVLFGLVAAFLALRLRSILGTRVGVEPAPPPSA
VPRPGPVIEGRAEPPATLTDYDVPAPETRVGQVLAAIAQQERDFVPAQFLKGVEAAFR
QIVLAFAAGDVAMLRERLTANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIE
ERDGATHARIDVRIVSDQISLTSDKDGHPVAGTDAVTEFSDLWTFERPLGVAISGAAW
RLAASRSA"
misc_feature complement(318009..318452)
/locus_tag="Gdia_0288"
/note="Tim44 is an essential component of the machinery
that mediates the translocation of nuclear-encoded
proteins across the mitochondrial inner membrane; Region:
Tim44; smart00978"
/db_xref="CDD:198046"
gene 318936..319451
/locus_tag="Gdia_0289"
/db_xref="GeneID:6973681"
CDS 318936..319451
/locus_tag="Gdia_0289"
/note="molecular chaperone that is required for the normal
export of envelope proteins out of the cell cytoplasm; in
Escherichia coli this proteins forms a homotetramer in the
cytoplasm and delivers proteins to be exported to SecA"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecB"
/protein_id="YP_002274701.1"
/db_xref="GI:209542472"
/db_xref="InterPro:IPR003708"
/db_xref="GeneID:6973681"
/translation="MSDTTQPPADDAQNVPPAMPLTINVQYIKDLSFEVPAGAEIFAT
LRANPQIAVNIDVQANRLQAEHPVFEVVLAIKTEALEAPEKEGAAPGRPVFIAELAYG
AVVTLTNAPDELVEPILLVEVPRLIFPYVRNIISEVTRDGGFPPVVLQPIDFVALWQA
KRSFPQTAGNA"
misc_feature 318966..319448
/locus_tag="Gdia_0289"
/note="preprotein translocase subunit SecB; Validated;
Region: PRK05751"
/db_xref="CDD:180234"
misc_feature order(319023..319025,319035..319037,319221..319223,
319227..319229)
/locus_tag="Gdia_0289"
/note="SecA binding site; other site"
/db_xref="CDD:29643"
misc_feature order(319218..319220,319224..319226,319230..319232,
319236..319238)
/locus_tag="Gdia_0289"
/note="Preprotein binding site; other site"
/db_xref="CDD:29643"
gene complement(319529..320266)
/locus_tag="Gdia_0290"
/db_xref="GeneID:6973682"
CDS complement(319529..320266)
/locus_tag="Gdia_0290"
/note="PFAM: Uroporphyrinogen III synthase HEM4;
KEGG: gdi:GDI2069 putative uroporphyrinogen III synthase"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen III synthase HEM4"
/protein_id="YP_002274702.1"
/db_xref="GI:209542473"
/db_xref="InterPro:IPR003754"
/db_xref="GeneID:6973682"
/translation="MPPDAPPRTGVLVTRPEPGLADTMAAVERLGWQAHAMPALRIEP
IMDAVLPLARTQAVLLTSGQAIAALAGRVRPDMPILAVGAVTARRMRDAGFTDVTVAA
GTAADLADLARDRLDPGAGSLLVPTAPTYGQDLAVALRRAGFRVSRRCVYRVRPAGAP
DAAVRTALAGGVIDAALFYSAETARQFLRHLPAGGHAALRNIRAIAISKSTEAALSTA
TWRAIQVAARPDQAAILDRLGRRPAGE"
misc_feature complement(319553..320236)
/locus_tag="Gdia_0290"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature complement(order(319718..319732,319805..319807,
319811..319813,319883..319885,320012..320014,
320075..320083,320222..320224))
/locus_tag="Gdia_0290"
/note="active site"
/db_xref="CDD:119440"
misc_feature complement(319559..320194)
/locus_tag="Gdia_0290"
/note="Uroporphyrinogen-III synthase HemD; Region: HEM4;
pfam02602"
/db_xref="CDD:202304"
gene complement(320256..321359)
/locus_tag="Gdia_0291"
/db_xref="GeneID:6973683"
CDS complement(320256..321359)
/locus_tag="Gdia_0291"
/EC_number="2.5.1.61"
/note="KEGG: gdi:GDI2070 porphobilinogen deaminase;
TIGRFAM: porphobilinogen deaminase;
PFAM: Porphobilinogen deaminase"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_002274703.1"
/db_xref="GI:209542474"
/db_xref="InterPro:IPR000860"
/db_xref="GeneID:6973683"
/translation="MVSAPPSVPGPSAAPSSALQKIAAQAAARQKQAATRAALPHRRE
LPLRVGTRASPLALVQTRAFLTMLTRFCPVLRDMGAFQEHQINTTGDQVQNRRLAEIG
GKGLFAKEIHDALSDGRIDFAVHSLKDLETTLPPGLVLACTLRREDARDALILGPGAG
GRHDAADAADPYAALPRNALVGCASVRRQAQMLHVRPDLRFGLLRGNVQTRLDKLAAR
QCDATLLALAGLRRLGMEDRADIVLDPEIMVPAAGQGIVGVTVRESDVELRELLAAIE
DYEARAVATAERALLAELDGSCRTPIGGYARLVPGLAGAEASLRLTGLVAREDGSFLL
RRTVTGLRADAEEMGRELGRSLRMDSPSDVFAA"
misc_feature complement(320289..321224)
/locus_tag="Gdia_0291"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:178840"
misc_feature complement(320292..321221)
/locus_tag="Gdia_0291"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cl03189"
/db_xref="CDD:207872"
misc_feature complement(order(320355..320357,320361..320363,
320370..320372,320379..320381,320394..320396,
320448..320450,320454..320456,320466..320468,
320487..320489,320496..320501,320511..320513,
320520..320522,320541..320543,320595..320618,
320664..320669,320676..320678,320739..320741,
320778..320780,320790..320795,320799..320801,
320907..320924,320928..320933,320958..320960,
320964..320981,321183..321185,321198..321200))
/locus_tag="Gdia_0291"
/note="domain interfaces; other site"
/db_xref="CDD:29604"
misc_feature complement(order(320466..320468,320595..320600,
320607..320609,320664..320666,320673..320675,
320682..320690,320727..320729,320748..320750,
320796..320801,320805..320813,320973..320978,
320982..320984,321180..321182,321192..321194))
/locus_tag="Gdia_0291"
/note="active site"
/db_xref="CDD:29604"
gene 321431..322579
/locus_tag="Gdia_0292"
/db_xref="GeneID:6973684"
CDS 321431..322579
/locus_tag="Gdia_0292"
/EC_number="3.4.24.57"
/note="KEGG: gdi:GDI2071 putative O-sialoglycoprotein
endopeptidase;
TIGRFAM: metalloendopeptidase, glycoprotease family;
PFAM: peptidase M22 glycoprotease"
/codon_start=1
/transl_table=11
/product="glycoprotease family metalloendopeptidase"
/protein_id="YP_002274704.1"
/db_xref="GI:209542475"
/db_xref="InterPro:IPR000905"
/db_xref="GeneID:6973684"
/translation="MIMSVSPATPPDSAETAAQAPVPAPDMAPILAIESSCDDTACAI
LAPDGTILAETVLSQAGHVPFGGVVPEIAARAHLAALPALVRHTLDVAALPAEALGAI
AASTGPGLIGGLIVGAGMAKGLAVALGRPFVAVNHIEAHALTARLPGLVPGGASFPYL
LLLVSGGHCQCIAVEGVGRYRKLGGTIDDAAGEAFDKVAKMLGLGWPGGPAVEALARE
GDPAPWPLPRPLRGRPGCDFSFSGLKTAVAQKLAPFAAGALPRTAAAGIAASFQDAVA
DIVADRVAHALDMMPQATLLVAAGGVAANTALRTRLTTLATSRALPFAAPPLRLCTDN
AVMVGWAAIETLRERRRLGLPPTDDLDLLPRPRWPLEQMAERFAHPAP"
misc_feature 321518..322474
/locus_tag="Gdia_0292"
/note="UGMP family protein; Validated; Region: PRK09604"
/db_xref="CDD:181984"
misc_feature <321743..>321877
/locus_tag="Gdia_0292"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 322576..323403
/locus_tag="Gdia_0293"
/db_xref="GeneID:6973685"
CDS 322576..323403
/locus_tag="Gdia_0293"
/note="PFAM: protein of unknown function DUF519;
KEGG: gdi:GDI2072 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274705.1"
/db_xref="GI:209542476"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR007473"
/db_xref="GeneID:6973685"
/translation="MNYRHAFHAGNFADCMKHALLVLLLQALARKPAPFAVLDTHAGI
GRYDLTGEQAGRTGEWRNGIGRLLETAPDGVPSLYLDLVRRAGAPDIYPGSPLIAAMM
LRPQDRLICCELHPEDSRLLRAVFAGQPQIAVHARDGYAALRALLPPRDAKRGLVLID
PPFEQPDEFHRLAGGIVTAHRRFATGIIAAWYPIKHRAPVRAFLDSLRESGMRDIVAL
ELTLRPPLDPSRLNGSGLVVVNPPFGFLDQALPALRALAHLSPDGTGEAAVTRIVEE"
misc_feature 322576..323400
/locus_tag="Gdia_0293"
/note="Protein involved in catabolism of external DNA
[General function prediction only]; Region: ComJ; COG2961"
/db_xref="CDD:32781"
gene 323437..324399
/gene="gpsA"
/locus_tag="Gdia_0294"
/db_xref="GeneID:6973686"
CDS 323437..324399
/gene="gpsA"
/locus_tag="Gdia_0294"
/EC_number="1.1.1.94"
/note="catalyzes the NAD(P)H-dependent reduction of
glycerol 3-phosphate to glycerone phosphate"
/codon_start=1
/transl_table=11
/product="NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase"
/protein_id="YP_002274706.1"
/db_xref="GI:209542477"
/db_xref="InterPro:IPR006109"
/db_xref="InterPro:IPR006168"
/db_xref="InterPro:IPR011128"
/db_xref="InterPro:IPR017441"
/db_xref="GeneID:6973686"
/translation="MNAPRIAVIGAGAWGIALAVQAARAGAQVHLWARKPDSLSDTRT
LPRLPHVTLPESITVTGDMPARADAVLLAVPMQHLRAVLGHVPPAGPMIACCKGVERD
SLALPLEVIASRHPNLPRAVLSGPNFAHEVAQGLPTAAVLACEDPVEARDLADHLTTP
EFRLYASDDAIGVQIGGAAKNVIAIAAGATIGAGLGENARASLMTRGLAELGRLSRGL
GGRAETLSGLAGVGDLILTCTGPSSRNFSLGLALGRGEALSAILGQRTTVAEGVTTAP
AILALARKHDISVPVIETVSLLLAEDIDLAEARDRLLSRPVGTE"
sig_peptide 323437..323505
/gene="gpsA"
/locus_tag="Gdia_0294"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.994) with cleavage site probability 0.508 at
residue 23"
misc_feature 323524..323877
/gene="gpsA"
/locus_tag="Gdia_0294"
/note="NAD-dependent glycerol-3-phosphate dehydrogenase
N-terminus; Region: NAD_Gly3P_dh_N; pfam01210"
/db_xref="CDD:201664"
misc_feature 323527..324381
/gene="gpsA"
/locus_tag="Gdia_0294"
/note="NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated; Region: gpsA; PRK00094"
/db_xref="CDD:178859"
misc_feature 323938..324321
/gene="gpsA"
/locus_tag="Gdia_0294"
/note="NAD-dependent glycerol-3-phosphate dehydrogenase
C-terminus; Region: NAD_Gly3P_dh_C; pfam07479"
/db_xref="CDD:116100"
gene complement(324442..324891)
/locus_tag="Gdia_0295"
/db_xref="GeneID:6973687"
CDS complement(324442..324891)
/locus_tag="Gdia_0295"
/note="KEGG: gdi:GDI2074 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274707.1"
/db_xref="GI:209542478"
/db_xref="GeneID:6973687"
/translation="MTFTRTALLATLMMSGLMSGLHDAEAWDRNNSSGTSQGRARNTM
HSGGCTGTACGNGGTTTGSNGYGYNPYQQGGGVYVTPGDIWPYGVPNGQQQSSGPVST
TCVDNQCNRLATGRGQRGGARDPDAGGTSATCMDGVCNGTPGSGTGN"
sig_peptide complement(324811..324891)
/locus_tag="Gdia_0295"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.989) with cleavage site probability 0.723 at
residue 27"
gene complement(324933..326174)
/locus_tag="Gdia_0296"
/db_xref="GeneID:6973688"
CDS complement(324933..326174)
/locus_tag="Gdia_0296"
/note="PFAM: Na+ dependent nucleoside transporter;
nucleoside recognition domain protein; Na+ dependent
nucleoside transporter domain protein;
KEGG: gdi:GDI2075 putative inner membrane transport
protein"
/codon_start=1
/transl_table=11
/product="Na+ dependent nucleoside transporter
domain-containing protein"
/protein_id="YP_002274708.1"
/db_xref="GI:209542479"
/db_xref="InterPro:IPR002668"
/db_xref="InterPro:IPR008276"
/db_xref="InterPro:IPR011642"
/db_xref="InterPro:IPR011657"
/db_xref="GeneID:6973688"
/translation="MPVLHGILGLAGLIGLAVAFSTDRRAIRPRIVLAAGLMQVALGG
MVLFVPPGRHALHALSGAVDTVLGYGAQGSLFLFGALVDPRMNTLFPHTGFIFAFRVL
PQIVYVSALIAILYHYRVMQRLAALLGGAVRRALGTSTIESFSAVTTIFLGQSEMPVA
LRPYVPLLTRAELFAVMSSGTASVAGSVLAGYAGLGVPMDYLLAASVMAIPGGLLFAK
ILMPAREATRITRLDLEFGHEHPATVFEAVAIGAASGVGVAVAVGSMLIAFIGLIALA
NGMIHGLGGWLGIADLSLERLFGVVFAPLAWLIGVPWHECGVVGAIMGQKLVFNEFVA
YVALAPHFHDAALDPRALAIASFALCGFANLSSIGILIAGFGSVAPERRADVAKMGLR
AVMAGSLSNFASATIAGMFVG"
sig_peptide complement(326115..326174)
/locus_tag="Gdia_0296"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.753) with cleavage site probability 0.511 at
residue 20"
misc_feature complement(324936..326123)
/locus_tag="Gdia_0296"
/note="Nucleoside permease [Nucleotide transport and
metabolism]; Region: NupC; COG1972"
/db_xref="CDD:32155"
misc_feature complement(325929..326123)
/locus_tag="Gdia_0296"
/note="Na+ dependent nucleoside transporter N-terminus;
Region: Nucleos_tra2_N; pfam01773"
/db_xref="CDD:201962"
misc_feature complement(325578..325883)
/locus_tag="Gdia_0296"
/note="Nucleoside recognition; Region: Gate; pfam07670"
/db_xref="CDD:203716"
misc_feature complement(324939..325574)
/locus_tag="Gdia_0296"
/note="Na+ dependent nucleoside transporter C-terminus;
Region: Nucleos_tra2_C; pfam07662"
/db_xref="CDD:203714"
gene 326321..326806
/locus_tag="Gdia_0297"
/db_xref="GeneID:6973689"
CDS 326321..326806
/locus_tag="Gdia_0297"
/note="PFAM: glutathione peroxidase;
KEGG: gdi:GDI2077 putative glutathione peroxidase"
/codon_start=1
/transl_table=11
/product="glutathione peroxidase"
/protein_id="YP_002274709.1"
/db_xref="GI:209542480"
/db_xref="InterPro:IPR000889"
/db_xref="GeneID:6973689"
/translation="MTTAYDFTLPSLDGGTIDLGALRGKPILIVNTASKCGFTPQFEG
LQALWSFYRGNGLTIIGVPSNDFGNQEPGTSTEIATFCARNYSVTFPMAARSHVRGAD
TLPLFRWIAQQGGLMARPRWNFYKYLIGRDGRLANWFVSLTSPESHRMRVAIERAILD
T"
misc_feature 326327..326794
/locus_tag="Gdia_0297"
/note="Glutathione (GSH) peroxidase family; tetrameric
selenoenzymes that catalyze the reduction of a variety of
hydroperoxides including lipid peroxidases, using GSH as a
specific electron donor substrate. GSH peroxidase contains
one selenocysteine residue per...; Region: GSH_Peroxidase;
cd00340"
/db_xref="CDD:48492"
misc_feature order(326426..326428,326528..326530,326684..326686)
/locus_tag="Gdia_0297"
/note="catalytic residues [active]"
/db_xref="CDD:48492"
misc_feature order(326525..326527,326534..326536,326540..326542,
326549..326551,326558..326560,326570..326572)
/locus_tag="Gdia_0297"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48492"
gene 326902..328470
/locus_tag="Gdia_0298"
/db_xref="GeneID:6973690"
CDS 326902..328470
/locus_tag="Gdia_0298"
/note="TIGRFAM: integral membrane protein MviN;
PFAM: virulence factor MVIN family protein;
KEGG: gdi:GDI2078 putative virulence factor MviN"
/codon_start=1
/transl_table=11
/product="integral membrane protein MviN"
/protein_id="YP_002274710.1"
/db_xref="GI:209542481"
/db_xref="InterPro:IPR004268"
/db_xref="GeneID:6973690"
/translation="MLRGFLTVGGWTMLSRVLGLVRDQLLAAFLGAGPVQDAYQVAFR
LPNMFRQLFGEGALNTAFVPLFSGMLATEGPDRARRFASETFSVLLTWLTMIAVLGEV
FMPQVVRVIAAGFPLDGDRYHMAVTLSRITFPYLVLICAAALVSGVLNGLHRFGVAAA
AYVSFNVVGIASIFLLTPLTGDVARAAAWGVTASGVAQLGLLLLAVRRAGFRLMLLPP
RLTARIHTLIRRMAIGCLGSGVSQINLLVDTIIASYLPPGSVSFIYFADRINQLPLGV
LGAAAGTTLLPVLSRHVAAEDHDGAHGAQNRAIDYAMILTLPAALGMMVLAQPIIATL
FQHGAFTPRDAMLSAQSLRAFAIGLPAFVLIKVLAPGFFARGDTATPVRVGLFTLTLN
FVLNLLLMHPLHHAGPPLASSLAAIVNVATLGFLLRRRGILRISTTTLSRVGRMALAA
LGMAAVLMMLDLTALGPLAVQHGPLRIMALGVLVMAGMLAYGAGLQVLGVMELRVAAA
MLRARLARRRGRPA"
misc_feature 326902..328164
/locus_tag="Gdia_0298"
/note="Uncharacterized membrane protein, putative
virulence factor [General function prediction only];
Region: MviN; COG0728"
/db_xref="CDD:31072"
gene 328534..331155
/locus_tag="Gdia_0299"
/db_xref="GeneID:6973691"
CDS 328534..331155
/locus_tag="Gdia_0299"
/note="This protein performs the mismatch recognition step
during the DNA repair process"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein MutS"
/protein_id="YP_002274711.1"
/db_xref="GI:209542482"
/db_xref="InterPro:IPR000432"
/db_xref="InterPro:IPR005748"
/db_xref="InterPro:IPR007695"
/db_xref="InterPro:IPR007696"
/db_xref="InterPro:IPR007860"
/db_xref="InterPro:IPR007861"
/db_xref="GeneID:6973691"
/translation="MTLPSPDGATPAMAQWFSLKAEHPEALLFFRMGDFYEMFFSDAE
AAAGALDIALTARGTHGDIPIPMCGVPVGAASSYLARLIRRGFRVAVAEQTEPPRKPG
KGGPKGPLARAVVRLVTPGTLTEDELLEAGRQNLLLAVASRGGRGTRGWGVAWIDIST
GTFETASVPAEGLMDLLGRLDPAEILAAAEIDLGDFAARRAPATIPPGPEAARRRVAE
TFHVASLDAFGTFSDEEAVAGAMALDYVRRSQAGQMPRLSRPQAHENGGVLGLDPATR
ASLDLLRTRDGGTEHTLLASVGRTVTAPGSRLLAEWIAAPLTRDAAIAARQDGWSWLI
EEGGVRAALRQGLRGTPDIARALARLSLGRGLPRDAAAIRDGLAIARRIAQALTDGRT
APPALLADAMRHLGEATDLEARLKQALAEDLPARVEDGGVIAAGFDAELDAERALRDD
SRRVIAGLQNDYAQKFGLASLKIRHHAQLGYVIEVPAATAPRLRERTDLILRQGTASA
ARFSTEELVSLDRRIAEAAERAATRERRIFAALVREILDEPAPPVIAGALAVLDVLQS
CADLAAGGMWCRPEVTDDDAFTLTACRHPVVEAALPRSERFTPNDCVLEPAQRVMLLT
GPNMAGKSTFLRQTALAVILAQAGLPVPAKAARIGVVDRLFSRVGASDDLARGRSTFM
VEMTETAAILNQAGPRSLVVVDEIGRGTATLDGLAIAWSVLEAMHSTLRCRSIFATHF
HELAELAESLPRLSPHTMSVREWKGQVIFQHEVIPGSARRSWGVHVARLAGVPEPVVR
RAARLLAGLEKERAVGARPLPLFAPADSTPPAEEPDPGVPEPVRRMLEQLDPDELTPR
TALDMVYAIKKLMLEES"
misc_feature 328543..331140
/locus_tag="Gdia_0299"
/note="DNA mismatch repair protein MutS; Provisional;
Region: PRK05399"
/db_xref="CDD:180056"
misc_feature 328561..328914
/locus_tag="Gdia_0299"
/note="MutS domain I; Region: MutS_I; pfam01624"
/db_xref="CDD:144998"
misc_feature 328936..329298
/locus_tag="Gdia_0299"
/note="MutS domain II; Region: MutS_II; pfam05188"
/db_xref="CDD:147397"
misc_feature 329839..330093
/locus_tag="Gdia_0299"
/note="MutS family domain IV; Region: MutS_IV; pfam05190"
/db_xref="CDD:203196"
misc_feature 330298..330945
/locus_tag="Gdia_0299"
/note="MutS1 homolog in eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired and
unpaired bases embedded in duplex DNA and activating endo-
and exonucleases to remove the mismatch. Members of the
MutS family possess C-terminal...; Region: ABC_MutS1;
cd03284"
/db_xref="CDD:73043"
misc_feature 330406..330429
/locus_tag="Gdia_0299"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73043"
misc_feature order(330415..330420,330424..330432,330538..330540,
330643..330648,330748..330750)
/locus_tag="Gdia_0299"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73043"
misc_feature 330529..330540
/locus_tag="Gdia_0299"
/note="Q-loop/lid; other site"
/db_xref="CDD:73043"
misc_feature 330553..330594
/locus_tag="Gdia_0299"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73043"
misc_feature 330631..330648
/locus_tag="Gdia_0299"
/note="Walker B; other site"
/db_xref="CDD:73043"
misc_feature 330655..330666
/locus_tag="Gdia_0299"
/note="D-loop; other site"
/db_xref="CDD:73043"
misc_feature 330736..330756
/locus_tag="Gdia_0299"
/note="H-loop/switch region; other site"
/db_xref="CDD:73043"
gene 331184..334153
/locus_tag="Gdia_0300"
/db_xref="GeneID:6973692"
CDS 331184..334153
/locus_tag="Gdia_0300"
/EC_number="2.7.7.59"
/note="catalyzes the uridylylation or deuridylylation of
the PII nitrogen regulatory protein"
/codon_start=1
/transl_table=11
/product="PII uridylyl-transferase"
/protein_id="YP_002274712.1"
/db_xref="GI:209542483"
/db_xref="InterPro:IPR002363"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR002934"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR010043"
/db_xref="InterPro:IPR013546"
/db_xref="GeneID:6973692"
/translation="MEGRPPSGPTPMQEIDPPAMSTPSSPSQASTPSAVRDLTTSLAA
SLLSPEDGAAVPREQAIALFRRHLARFQASVREEFEAHRLHGTSAAKQLALHTDGMIR
TLVDFTLDHALAGSIGPGARSLAVTATGGYGRGMLAPFSDIDLLFLTTDEPSADVSRV
VEYILYFLWDLGLKVGHATRSIAQCIAEAEADTTVRTTLLDARLLAGDASLFAMFEAR
YIVACVEAGAARFISDKHKERTARHNRFGDSPYLVEPNVKEGRGGLRDLQTLYWMCRY
TFGTRHVSDLLAPGFSRLGLLTEQEAKRARRSWDFLWSVRLHLHYISGRAEERLTFDV
QPVVGARMGYTRHGRQVGVERFMRHYFLTVREVMRLTHVLEPAVMRQALGPAANAPQA
DSAMRDAGFTVLDGQILPERGTSFDAEPIQMMRLLEWARTRKLPIHPLAMHQLIRWER
RAASLRGDPEAARIFLELLCGTPPERIGRPPHSAEAENAAGEEVPSFHATAQDRRQGN
AYWLHILNETGIMGRLMPDWSRIVGQMQFDTYHVFTVDEHTIEAIRIFGRIEHGAMAD
EIPQAYDLARNLQSRRALYMAILLHDIAKGRGGDHSELGSEIALDVCPEMGLTGEETE
TVSWLVLHHLLLSHTAFQRDIDDPKTILDLADTIQSPERLRLLLLLTIVDMRAVSPRV
WNAWKATLLHELYMRVAEVLEGGLATTERDVRVARAKDAAAEILEDDGFKRADIDHFL
GLGYGSYWLSFDQDTHARHAELIREAERHKAPLTVETQPLPARGVTEVTIYTADHPGL
FSRMAGALAIAGASIVDARIHTLINGMALDTFWIQDAGGEAFEEPHQLARLSALVEQA
LSGRVDIPKEIVSAGRMRYGRRMRAIHVPPRVVIDNRASNTYTVIEINGRDRPGLLHD
VTQAISDHKLQIASAHITTYGVRAVDVFYVKDLFGLKITDERRLGEIREALLHGLRQA
EEAMTSEIGPPAESLIA"
misc_feature 331334..334141
/locus_tag="Gdia_0300"
/note="PII uridylyl-transferase; Provisional; Region:
PRK05092"
/db_xref="CDD:179932"
misc_feature 331397..331837
/locus_tag="Gdia_0300"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature order(331607..331609,331613..331615,331691..331693)
/locus_tag="Gdia_0300"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
misc_feature 331871..332305
/locus_tag="Gdia_0300"
/note="GlnD PII-uridylyltransferase; Region:
GlnD_UR_UTase; pfam08335"
/db_xref="CDD:149407"
misc_feature 333536..333754
/locus_tag="Gdia_0300"
/note="ACT domain family, ACT_UUR-like_1, includes the
first of two C-terminal ACT domains of the bacterial
signal-transducing uridylyltransferase /uridylyl-removing
(UUR) enzyme, GlnD and related domains; Region:
ACT_UUR-like_1; cd04900"
/db_xref="CDD:153172"
misc_feature 333878..334090
/locus_tag="Gdia_0300"
/note="C-terminal ACT domains of the bacterial
signal-transducing uridylyltransferase /uridylyl-removing
(UUR) enzyme, GlnD and related domains; Region:
ACT_ACR-UUR-like_2; cd04899"
/db_xref="CDD:153171"
gene complement(334202..334627)
/locus_tag="Gdia_0301"
/db_xref="GeneID:6973693"
CDS complement(334202..334627)
/locus_tag="Gdia_0301"
/note="KEGG: gdi:GDI2081 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274713.1"
/db_xref="GI:209542484"
/db_xref="GeneID:6973693"
/translation="MRVSSTSSIIVHLVQNSSASSQTLLNNSPSTPTTFSDMSPQEME
AAREQLTREGKITLHQSGEMALMDGYALEGVNGGKLVSGSSNMYSMIDNLISYQEKNG
IGDVQGDIASLKSLRSILEEYDKNNQITASMASETALNE"
gene complement(334709..335416)
/locus_tag="Gdia_0302"
/db_xref="GeneID:6973694"
CDS complement(334709..335416)
/locus_tag="Gdia_0302"
/note="KEGG: gdi:GDI2082 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274714.1"
/db_xref="GI:209542485"
/db_xref="GeneID:6973694"
/translation="MTRIATTQSDLTYLGPFGTDSDASSTQSSAASAEGGAAPVSSDG
DSVTLSQEALSRLDQIIQSSRQSVRADAEQRVDRLQAQIRQLMFMKAFLSPKALAQEL
AQFAHQLAAAVQQYAQNQGTSAGMAEVGDMVISVPQDTQDSSGTVRDGGDVSDPSLSQ
PATDSTSGQAAGGSGKNGAGTSDSPDFQQTVRKVAAQLEDMLKEAKNRLKKQHNSDIQ
SAQDALDEVEQDLPKLS"
gene complement(335457..336365)
/locus_tag="Gdia_0303"
/db_xref="GeneID:6973695"
CDS complement(335457..336365)
/locus_tag="Gdia_0303"
/note="KEGG: gdi:GDI2083 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274715.1"
/db_xref="GI:209542486"
/db_xref="GeneID:6973695"
/translation="MGLSITASGASTYNVWAESKKADAPATETSGDRSARDIGLSASA
QALIQADLSKMTSTVVVHVANGVGAQPITASGEMSYGSWVENNELSYMLPTTAERAPK
ATSETTAMESFGGGASQSAGLSVSTKEYDLSRSDAVMLHVPGGWVAAANEMVNGVDTG
YGPDAVTGDYQQEVDVSTVSLSALYTAAGKSADEKSDTETASLITQFVQQSSGSQDPV
AWKEEPDGTVEFATFSSSFTPNGSAATADSTSESDGTAGSAASATAVLDPVATKRADQ
NNLIDQLFQISDEKHKPGDKSKLDLT"
gene complement(336501..338441)
/locus_tag="Gdia_0304"
/db_xref="GeneID:6973696"
CDS complement(336501..338441)
/locus_tag="Gdia_0304"
/note="PFAM: TPR repeat-containing protein;
Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat
protein;
SMART: Tetratricopeptide domain protein;
KEGG: gdi:GDI2084 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274716.1"
/db_xref="GI:209542487"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR011717"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:6973696"
/translation="MDKRQAAPDGPDSAARAMALLEAGDRDGALALLHAALSARPACR
DADVLHGMACVARAAGRPDLAIGLAGKAVALLPAAHFHITLGCALREQGHVEEARAAL
AVAVLREPRDARAHAALAGALGELGRWAEAEASLRAARALCPGDMALLLEWARACIHG
GDHAAATAEIVAGADRFAPDHAGALHGLATLLADRGQPAGAEALYRQIVRLLPDDGAA
WANHGAALFALNRHEDARVALEHAAALAPGVAETQNNLGLVLMALGHLPQARTALERA
RILAPGDARIAVNAATILDELAEGDAAEALYRAVLRDPILAREAEGARAQFNLGTLLL
ARGAYAEGWRHLEARSRLLPPMRGQGVAEWDGASLPRGRVLLYAEQGLGDAIQFLRYL
PDCLRRASVVLDVPHSLHRLLQTMPDPDGQIATRCTVLPPGDPLPDDVVARCGLISLP
HRLGMTDIPPFAPYLLPAPAPDLGERPRVGLCWAGNPSFRFDRRRSIPAHRLAPLADV
PGLFFVSLQHGPAAAAPPFALERSAEGDMLDTARIVAGLDLVITVDTAIAHLAGAMGR
PVWLLNRFGGDWRWSATFDRAEPPRWGDRGSRWYPSLEQFRQHQPDDPDTAWAAPIEA
VHAALLRWRVGFATGPLADKSA"
misc_feature complement(337599..337862)
/locus_tag="Gdia_0304"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(337614..337616,337623..337625,
337635..337637,337671..337673,337716..337718,
337725..337727,337737..337739,337773..337775,
337818..337820,337827..337829,337839..337841))
/locus_tag="Gdia_0304"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(order(337653..337658,337665..337670,
337677..337682,337758..337763,337770..337775,
337779..337784))
/locus_tag="Gdia_0304"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(<336738..>336881)
/locus_tag="Gdia_0304"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
gene 338526..340025
/locus_tag="Gdia_0305"
/db_xref="GeneID:6973697"
CDS 338526..340025
/locus_tag="Gdia_0305"
/EC_number="3.4.17.19"
/note="PFAM: peptidase M32 carboxypeptidase Taq
metallopeptidase;
KEGG: gdi:GDI2085 thermostable carboxypeptidase 1"
/codon_start=1
/transl_table=11
/product="carboxypeptidase Taq"
/protein_id="YP_002274717.1"
/db_xref="GI:209542488"
/db_xref="InterPro:IPR001333"
/db_xref="GeneID:6973697"
/translation="MPQHAYTDLTTHFARIGRIRNALGILGWDKDVMMPAGAAESRAD
SIATLDVLCHEILTAPVIAELLDRAEAPAGSWQAANLQEMRRAYLHAASVPADLVDAM
SRAASRCEMAWRAARREGDFAALLPTLSEVLDRTRDLAVVKGAALGLSPYDALLDQYD
PGTRRADIDPVFAELRRDLPALIADAQAHQAATPAPVLPTGPFPVPLQEQMGRRMMMA
LGFDMERGRLDVSAHPFCGGAEDDVRITTRYEDDDFLAALMGVIHETGHALYEQGLPH
DWRTQPVGQARGMSLHESQSLLMEMQVARSRPFMDWAAPLLRAAFGGAEADPAWSADS
LYRAVTRVRPGFIRVDADEVTYPAHVLVRYEMETALVDGTLALRDLPEAFNAGIHGLL
GLTVPNDRLGCLQDIHWPSGAWGYFPTYTMGAILAAQLRQAAFRADPAIPSGIAQGDF
APLLGWLRTHVHSQASRLSTPDIIRAATGAAPSTDAYRAHLRERYCGAE"
misc_feature 338538..340010
/locus_tag="Gdia_0305"
/note="Zn-dependent carboxypeptidase [Amino acid transport
and metabolism]; Region: COG2317"
/db_xref="CDD:32471"
misc_feature 338559..340010
/locus_tag="Gdia_0305"
/note="Peptidase family M32 includes thermostable
carboxypeptidases TaqCP and PfuCP; Region: M32_Taq;
cd06460"
/db_xref="CDD:188998"
misc_feature order(339312..339317,339324..339326,339402..339404,
339747..339749,339774..339776,339783..339785)
/locus_tag="Gdia_0305"
/note="active site"
/db_xref="CDD:188998"
misc_feature order(339312..339314,339324..339326,339402..339404)
/locus_tag="Gdia_0305"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:188998"
gene 340136..342070
/locus_tag="Gdia_0306"
/db_xref="GeneID:6973698"
CDS 340136..342070
/locus_tag="Gdia_0306"
/note="KEGG: gdi:GDI2086 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274718.1"
/db_xref="GI:209542489"
/db_xref="GeneID:6973698"
/translation="MSTTTTYKTASGVTYTVTDTSYLGQNDYDVTITASDGTVLLDQD
NINRGIDILGVIDLAASGDVITGSTDSTSLVSLASIGTYVSVPGATGNFIVGAGALAA
NTYYIGGTTTISGLANLVTGTTINVVGGTATLSGNSGSTLLGALNGSTVNIEYGGTFN
TGAALGSLLEGATVSFGSGGGTLVINGGGTAISLLASGPLSATTIQNYDPSRDTIELQ
DTVAPISGYTISGDTTRTITLYGSDGTQVATYTVNLASGVNLANGTYNAVNSTQGNPL
NITYTTGNTYIGVCFLADSMIRTPSGDIAVQDIRVGDEILACPDGEWRDGEQGTGERL
GTVVWTGKAHATVRPGLPDDEAGYPVRILRDAIADGVPYKDMLVTPEHCLFLDGVFIP
ARMLVNGRSIFHDRTITAYDYYHIETERHSVIIADGMPTESYLDTGNRRSFRQDGKIV
HIGAGNARSWTEDAAAPLGVTRAVVEPVFRRIEARARDAGIASAIVGPVLTDDTGLHL
LTENGQAIRRTRDANGYATFLIPPDVGTVRIVSRTSRPSDAIGPFLDDRRRLGVLVGG
ITLLDSDNMRLIDTYLADPALDGWDVQEAGPHRWTNGDAILPLGPRRPDSFGILAIQV
LAGGPYPVTAEATEAVAQSA"
misc_feature 341000..341443
/locus_tag="Gdia_0306"
/note="Hint domain; Region: Hint_2; pfam13403"
/db_xref="CDD:205581"
gene 342143..343294
/locus_tag="Gdia_0307"
/db_xref="GeneID:6973699"
CDS 342143..343294
/locus_tag="Gdia_0307"
/note="KEGG: gdi:GDI2087 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274719.1"
/db_xref="GI:209542490"
/db_xref="GeneID:6973699"
/translation="MSRFLPIPSPPLSSGLASGALAVSILFAALPALAAKPAPPLDPS
APLVPVAESTARVWNAVAVLPDGRMILEYPAWTGTPGPALTLRDADGTQHPYPDAGWN
DPAADPAHRFVSVEGLHLTDDGMLWALDSGIGADGHAPQPGSVKLVQVDTRTGAVART
YVLDPAVLRPGSHVAGVRVGKGYAFILDSGVPGLIVMDLAHGTQRRLLDHNPSLTAQR
TITVDGRTLLDTDGRAAIVHANRIEISPDGEWLYYQTLCGPLYRFGTELLTDTSLTDV
ELDDSATLWYKTPPLGGMTVGRDGTLYFDDVSTGSIFRFTTGRIYQRIVVDPRLRWPA
EPYITANGQLYVPTAQIDHTPHFNGGRVDVQWPLTLYRIDVRALPPAKY"
sig_peptide 342143..342247
/locus_tag="Gdia_0307"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.987 at
residue 35"
misc_feature 342479..343180
/locus_tag="Gdia_0307"
/note="Major royal jelly protein; Region: MRJP; pfam03022"
/db_xref="CDD:111866"
gene 343345..344742
/locus_tag="Gdia_0308"
/db_xref="GeneID:6973700"
CDS 343345..344742
/locus_tag="Gdia_0308"
/EC_number="4.2.3.1"
/note="catalyzes the formation of L-threonine from
O-phospho-L-homoserine"
/codon_start=1
/transl_table=11
/product="threonine synthase"
/protein_id="YP_002274720.1"
/db_xref="GI:209542491"
/db_xref="InterPro:IPR000634"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR004450"
/db_xref="GeneID:6973700"
/translation="MRYLSTRGQAPVRDFSSVLLAGLAEDGGLYLPETWPVLTADDWR
ALRGLPYPDLAARIIAPFTAGCIAPDVLQRLCRESYAGFDHAAIVPLTQVEDGLFVQE
LFHGPTLAFKDMAMQLLGRLFDHVLAERDAHVTIVGATSGDTGSAAIEACRGRERVKI
VILHPEGRTSDVQRRQMTTVLEPNVTNLAVQGTFDDCQDLVKAMFADAPFRQDMHLSA
VNSINWARIAAQIPYYVYAALALGAPDREVSFAVPTGNFGNILAAWAARRMGLPVRAL
CVGSNRNDILTRFLRDNDMSVQGVVPSLSPSMDIQVSSNFERLLFELLNRDAAACARI
VTEFRQTGHMAVPDPVWRQASGLFHALALDDQDTKTEIRNLHAASQYLADPHSAIGIA
AGRMFREPGIPMVAMATAHPAKFPDAMEQATGIRPALPPALADLFDRPERYEVVAARL
DAVEDRVRAAVLKNA"
misc_feature 343345..344721
/locus_tag="Gdia_0308"
/note="Threonine synthase [Amino acid transport and
metabolism]; Region: ThrC; COG0498"
/db_xref="CDD:30844"
misc_feature 343348..344706
/locus_tag="Gdia_0308"
/note="Threonine synthase catalyzes the final step of
threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic phosphate
is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD
includes members from higher plants, cyanobacteria;
Region: Thr-synth_2; cd01560"
/db_xref="CDD:107203"
misc_feature order(343678..343680,344107..344112,344569..344571)
/locus_tag="Gdia_0308"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107203"
misc_feature 343678..343680
/locus_tag="Gdia_0308"
/note="catalytic residue [active]"
/db_xref="CDD:107203"
gene 344807..346072
/locus_tag="Gdia_0309"
/db_xref="GeneID:6973701"
CDS 344807..346072
/locus_tag="Gdia_0309"
/EC_number="3.4.24.64"
/note="PFAM: peptidase M16 domain protein;
KEGG: gdi:GDI2089 peptidase, family M16"
/codon_start=1
/transl_table=11
/product="processing peptidase"
/protein_id="YP_002274721.1"
/db_xref="GI:209542492"
/db_xref="InterPro:IPR001431"
/db_xref="InterPro:IPR007863"
/db_xref="InterPro:IPR011765"
/db_xref="GeneID:6973701"
/translation="MTDQINVTRLPSGLTVVTERMERVETVSFGAYVAAGTCNEHAEE
NGVSHFLEHMAFKGTDSRTAAGIAEEIENVGGHINAYTAREHTAYYVKLLKEDLALGA
DIIGDILTHSSFAPDEVERERGVILQEIGQANDTPDDIIFDHFQETAFPEQPMGRPTL
GTEPLIQDMSRETLMRYMRTHYTTANTVIAAAGNLHHADVVALAERHFRDLPALDSST
GFDSRYLGGEFRKEKELDQAHVVLGFPSVGYGDPDYYPVLLLSTLLGGGMSSRLFQEI
REKRGLVYSVYSFNAPFRDGGLFGIYAGTGEDQADELIPVTLEELRKVQGHVGQDELN
RARAQLKSSLLMSLESTGSRCEQLARQLQVFGRLIPTAETVERINAVTIADVRRVATR
LFRGKPTLASLGPVRNIPGIAAIAEALAA"
misc_feature 344807..346036
/locus_tag="Gdia_0309"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature 344888..345295
/locus_tag="Gdia_0309"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature 345308..345826
/locus_tag="Gdia_0309"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene 346069..347409
/locus_tag="Gdia_0310"
/db_xref="GeneID:6973702"
CDS 346069..347409
/locus_tag="Gdia_0310"
/note="PFAM: peptidase U62 modulator of DNA gyrase;
KEGG: gdi:GDI2090 peptidase U62, modulator of DNA gyrase"
/codon_start=1
/transl_table=11
/product="peptidase U62 modulator of DNA gyrase"
/protein_id="YP_002274722.1"
/db_xref="GI:209542493"
/db_xref="InterPro:IPR002510"
/db_xref="GeneID:6973702"
/translation="MSTDPLDLLGTLIGKARAAGADAADAVYMARTTHGVQVRNGRTE
DLERSETSDLGLRVFVGRRSAIVSATSLDPERFDPLVAQALAMARVVPEDPHSGLSPD
AVQGFVDAAGMDLLDPAQPDTAALLDRARAAEDAAVSVAGVTNSNGGSASSGLSDIIL
MTSAGFSGRYARSSHSVSASVLAGQGTGMQRDYDYHATVHLSDLDDPAKIGRSAGEKA
VARLNPTRPRTGSMAVVFDPRVSSSLLGHLAGAVNGSAIARGTSFLKDRMGQRIMPAG
IHIIDDPTQSRGLSAHPFDGEGMRAGELVIVQDGVLMNWALDSRSARQVGLPGNGRAS
RGTTAPPGPSLGSLYARPGTVTPAALMADIAEGIYVTELMGSAINGLTGDYSRGASGF
MIRGGTLAEPVAELTIAGNLNDMFARMVLADDLVFRRGINAPTIRIDDLMIAGS"
misc_feature 346171..347403
/locus_tag="Gdia_0310"
/note="Predicted Zn-dependent proteases and their
inactivated homologs [General function prediction only];
Region: TldD; COG0312"
/db_xref="CDD:30660"
misc_feature 346174..347013
/locus_tag="Gdia_0310"
/note="Putative modulator of DNA gyrase; Region:
PmbA_TldD; pfam01523"
/db_xref="CDD:190021"
gene 347436..348398
/locus_tag="Gdia_0311"
/db_xref="GeneID:6973703"
CDS 347436..348398
/locus_tag="Gdia_0311"
/note="PFAM: import inner membrane translocase subunit
Tim44;
KEGG: gdi:GDI2091 hypothetical protein"
/codon_start=1
/transl_table=11
/product="import inner membrane translocase subunit Tim44"
/protein_id="YP_002274723.1"
/db_xref="GI:209542494"
/db_xref="InterPro:IPR007379"
/db_xref="GeneID:6973703"
/translation="MSTPTTPARPPRPRRAAILLLGTALAALPLLGLPQGADARPGSG
LSMGSRGSRTYSAPAPTTTSPYGAAPMQQSIMPRSAPGYGGAPSAFPRSPYGVPYGSP
YAARPHPFANGFLGGLLGAGLFGVLFGHGIAGGLHGGGSFLGFLIQLVLLFLLVGWLV
RRFGGGARRTAPMPAAPYGQGPSADQVTITPDDYRAFQRLLLDIQAAWSQRNLPALQH
MATPEMVGYFNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGFDYATVAMRYSMVD
ITTDMTGRVIDGSSTERVMVTELWTFVRPTRGGAWLLSAIQQGR"
sig_peptide 347436..347555
/locus_tag="Gdia_0311"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.472 at
residue 40"
misc_feature 348018..348389
/locus_tag="Gdia_0311"
/note="Tim44-like domain; Region: Tim44; pfam04280"
/db_xref="CDD:202957"
mobile_element complement(348714..349879)
/mobile_element_type="insertion sequence:Gdi5"
gene complement(348724..349793)
/locus_tag="Gdia_0312"
/note="ribosomal slippage"
/db_xref="GeneID:6973704"
CDS complement(join(348724..349305,349305..349793))
/locus_tag="Gdia_0312"
/ribosomal_slippage
/note="KEGG: gdi:GDI2093 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase IS630"
/protein_id="YP_002274724.1"
/db_xref="GI:209542495"
/db_xref="InterPro:IPR002197"
/db_xref="GeneID:6973704"
/translation="MTRAVKLRDDYSASELRRLAARSRQANAARRLLALAAIRDGASR
TDAARVGGMDRQTLRDWVHRFNAEGPDGLRDHLHAGPACRLSVAQQTELKALVEAGPD
RQRDGVVRWRRVDLQRVIEERFGVVYHERHVSTLLKRLGFSYVSARPRHPGQDAGVME
AFKKNFPRILNAHTGHLPKGKPIEIWFQDEARIGQKNGIVRQWARRGTRPRQPADQRY
ENAWLFGAICPARGKAAGLALPFIGTASMQLHIEEISRCVVRGAHAVVLLDRAGWHTT
DKLKLPRNISLIFLPSRAPELNPVENVWQFLRANWLSNTVFDGIDHIIDAACSAWNKL
AALPDTIRSIGLRKWAHTGQYL"
misc_feature complement(349371..349676)
/locus_tag="Gdia_0312"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:205729"
misc_feature complement(349566..349676)
/locus_tag="Gdia_0312"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
misc_feature complement(join(349300..349305,349305..349466))
/locus_tag="Gdia_0312"
/note="Winged helix-turn helix; Region: HTH_33; pfam13592"
/db_xref="CDD:205770"
misc_feature complement(348856..349245)
/locus_tag="Gdia_0312"
/note="DDE superfamily endonuclease; Region: DDE_3;
pfam13358"
/db_xref="CDD:205537"
gene 349977..350498
/locus_tag="Gdia_0313"
/db_xref="GeneID:6973705"
CDS 349977..350498
/locus_tag="Gdia_0313"
/note="KEGG: gdi:GDI2094 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274725.1"
/db_xref="GI:209542496"
/db_xref="GeneID:6973705"
/translation="MHFISGLPRSGSTLLAAILRQNPRFSASMSSPVCGLVRKLLDGM
SANSEFASFITDEQRRRILRGVFENYYGDNFTSRTVFDTNRAWSNCLPLLGDLFPGCR
VIACVRDVPWILDSIERLVRRNCLAASGMFNFDSAGSVYTRAEAVARADGMLGYGYNA
LKEAFYGEHVNFC"
misc_feature 350019..>350186
/locus_tag="Gdia_0313"
/note="ATP synthase B/B' CF(0); Region: ATP-synt_B;
cl07975"
/db_xref="CDD:212286"
mobile_element complement(350483..352964)
/note="family 21"
/mobile_element_type="insertion sequence:Gdi17"
gene complement(350569..351339)
/locus_tag="Gdia_0314"
/db_xref="GeneID:6973706"
CDS complement(350569..351339)
/locus_tag="Gdia_0314"
/note="PFAM: IstB domain protein ATP-binding protein;
SMART: AAA ATPase;
KEGG: gdi:GDI2704 putative transposase"
/codon_start=1
/transl_table=11
/product="IstB domain-containing ATP-binding protein"
/protein_id="YP_002274726.1"
/db_xref="GI:209542497"
/db_xref="InterPro:IPR002611"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6973706"
/translation="MRHDPAAGALVVMLRGLRMYGMAQATAELTEQGAPAFEAAIPVL
SQLLKAELAEREVRSIAYQTKTARFPAYKDLAGFDFSAAEVNEAMVRQLHAGDFIDRA
DNVVLIGGPGTGKTHLATALAVQAIEHHRKKIRFWSTVDLVNALEQEKTANRAGQIAE
RLLRLDLVILDELGYLPFSASGGALLFHLLSRLYERTSVINLSFSEWGEVFGDPKMTT
ALLDRLTHHCHILETGNDSYRFRASSAAPRNRKEKATA"
sig_peptide complement(351268..351339)
/locus_tag="Gdia_0314"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.637) with cleavage site probability 0.364 at
residue 24"
misc_feature complement(350617..351312)
/locus_tag="Gdia_0314"
/note="transposase/IS protein; Provisional; Region:
PRK09183"
/db_xref="CDD:181681"
misc_feature complement(<350899..351084)
/locus_tag="Gdia_0314"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(350992..351015)
/locus_tag="Gdia_0314"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(350989..351012)
/locus_tag="Gdia_0314"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
gene complement(351329..352852)
/locus_tag="Gdia_0315"
/db_xref="GeneID:6973707"
CDS complement(351329..352852)
/locus_tag="Gdia_0315"
/note="PFAM: Integrase catalytic region;
KEGG: gdi:GDI2705 putative integrase"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_002274727.1"
/db_xref="GI:209542498"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:6973707"
/translation="MELLSVIRRWHYRDHVPIREIERRTRLSRNTIRKYLRAETVEPQ
FKVAERPSRLDPFAEKLATWLALETSKSRKQRRTGRRLHVDLVALGYDGSYGRVAAFI
RNWKAEQQRARQTTGRGVFVPLRFQPGEAFQFDWGEDWAVIGGRRVKLQVAHTKLSYS
RAFILRAYPLQTHEMLFDALTEAFRVLGGVPRRGIFDNMKTAVDRVGPGKVRQVNLRF
SALVSHYLFEAEFCNPAAGWEKGQIEKTVQDARRQIWQEMPHFPDLASLNVWLEARCR
ERWTILRHVELPGSLAEAHAAEVPHLMVPGRPFDGFVEHTKRVSPTCLVQFESNRYSV
PASFANRPVSLRVYPDRLVIAAEGRILCEHPRIVERSHGVPGRTIYDWRHYLAVLQRK
PGALRNGAPFSELPEAFRTLQTHLLRRTGGDREMVEILALVLQHDEQAVLCAVELALE
EGVATKTHVLNTLHRLTDAKKTGAPRLDAPQALVLEREPQADTGRYDALRGEARHAS"
misc_feature complement(352037..352840)
/locus_tag="Gdia_0315"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:34222"
misc_feature complement(352091..352471)
/locus_tag="Gdia_0315"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
gene 352967..353191
/locus_tag="Gdia_0316"
/pseudo
/db_xref="GeneID:6973708"
gene 353245..353922
/locus_tag="Gdia_0317"
/db_xref="GeneID:6973709"
CDS 353245..353922
/locus_tag="Gdia_0317"
/note="KEGG: gdi:GDI2098 putative invasion associated
locus B (IalB) protein"
/codon_start=1
/transl_table=11
/product="putative invasion associated locus B (IalB)
protein"
/protein_id="YP_002274728.1"
/db_xref="GI:209542499"
/db_xref="GeneID:6973709"
/translation="MKLFTPVPLVAVIGGAAAALTLGVAYSGHSGPGVAQASTHGAAS
AVPASTPATAAPAAAPAASPAELSQSSGQWTYRCLYAQAPATGPALCTIEQHLIVQNP
QKKAVQVGDVLFSRSRTAGGSLSATYQLTLQTPLMVSLVRPPTIAIDDGAPVALTWQV
CTANGCIARMAPLPDAVLSSARHGKTGHIQIGTVQGGAVTINFELAGLDTAVTTLDSW
AHRQSPS"
sig_peptide 353245..353352
/locus_tag="Gdia_0317"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.557 at
residue 36"
misc_feature 353458..353889
/locus_tag="Gdia_0317"
/note="Invasion associated locus B (IalB) protein; Region:
IalB; cl02207"
/db_xref="CDD:154799"
gene complement(353981..354118)
/locus_tag="Gdia_0318"
/db_xref="GeneID:6973710"
CDS complement(353981..354118)
/locus_tag="Gdia_0318"
/note="KEGG: gdi:GDI2099 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274729.1"
/db_xref="GI:209542500"
/db_xref="GeneID:6973710"
/translation="MNQPHSLTDAEATEFVRRHRGRIYGVAITLLALAAVFYGLALVR
L"
gene complement(354128..355075)
/locus_tag="Gdia_0319"
/db_xref="GeneID:6973711"
CDS complement(354128..355075)
/locus_tag="Gdia_0319"
/note="converts protoheme IX and farnesyl diphosphate to
heme O"
/codon_start=1
/transl_table=11
/product="protoheme IX farnesyltransferase"
/protein_id="YP_002274730.1"
/db_xref="GI:209542501"
/db_xref="InterPro:IPR000537"
/db_xref="InterPro:IPR006369"
/db_xref="GeneID:6973711"
/translation="MSGAATTEGAVTRFDAALVGTEARDWFALLKPRVISLVVFTGAA
GLAMAPGPINPLIAAVSILCICMASGAAGAINMWYDRDIDAVMTRTARRPIPDGRIRD
DQALGFGIGLSVASVLLMWLAANALAAFILAFSIFFYAVIYTMWLKRSTPQNIVIGGA
AGAFPPMIGWAATTGSLGVLPVVMFAIVFLWTPPHFWSLSLYACKDYGRAGIPMLPVV
RGARHTRWQILFYTLILSAVSLVPSFLHQAGWLYTGVASLLDAGFVACAVGVLTDRQD
EAGVSLTGDRPARRAFRYSLAYLFLLFCGLLADHFLIMR"
misc_feature complement(354134..355009)
/locus_tag="Gdia_0319"
/note="protoheme IX farnesyltransferase; Provisional;
Region: PRK04375"
/db_xref="CDD:179840"
gene complement(355072..356436)
/locus_tag="Gdia_0320"
/db_xref="GeneID:6973712"
CDS complement(355072..356436)
/locus_tag="Gdia_0320"
/EC_number="1.9.3.1"
/note="PFAM: cytochrome c oxidase subunit I;
KEGG: gdi:GDI2101 putative cytochrome c oxidase subunit 1"
/codon_start=1
/transl_table=11
/product="cytochrome-c oxidase"
/protein_id="YP_002274731.1"
/db_xref="GI:209542502"
/db_xref="InterPro:IPR000883"
/db_xref="GeneID:6973712"
/translation="MPTDGQVRAGIGTGGFPARWNRACGHKTVGSLYLVLAVLAGLAG
GGLALLLQVGQAGLDGAASAPWHRMTIDHGALMILFCALPALTGGFGSWFVPLLLGAP
DMAFRRLNLLCWAGLAVSFALVLSGMATAPGMLLWCAAMLGLSIDMVATVLNMRRPGM
ALRDMPLFAWAQALTGMMMVIVLPVLAASLTRGLLAGTGGRQAELALRAFSGPEIGLL
LLPAAGIVCQVVETFSGVALRLRGAALGAMVVLSVGGATIWVHDLFADGLAVQSVVRP
LIEQATIAVPMLVLLAAWGATVLGGRAAFRVPMLWACAFAVLLVAGPVLALLGGPAAG
HAVALPAALFATFAGFYYWIGKMTGRACPERAGRLHVALAVGGSILLLAPHQPAFVST
GVVLLGLSMLAFVAAIALTLAGRTRPLAANYWGPGARTLEWTVPSPAPRDSFAGILAH
GARA"
misc_feature complement(355096..356220)
/locus_tag="Gdia_0320"
/note="Heme-copper oxidase subunit I. Heme-copper
oxidases are transmembrane protein complexes in the
respiratory chains of prokaryotes and mitochondria which
catalyze the reduction of O2 and simultaneously pump
protons across the membrane. The superfamily is...;
Region: Heme_Cu_Oxidase_I; cl00275"
/db_xref="CDD:206949"
misc_feature complement(order(355225..355227,355420..355425,
355432..355434,355453..355455,356191..356193,
356203..356208,356218..356220))
/locus_tag="Gdia_0320"
/note="Low-spin heme binding site [chemical binding];
other site"
/db_xref="CDD:29930"
misc_feature complement(order(355984..355986,355996..355998,
356002..356004,356107..356109,356128..356130,
356158..356160))
/locus_tag="Gdia_0320"
/note="D-pathway; other site"
/db_xref="CDD:29930"
misc_feature complement(order(355438..355440,355651..355656,
355801..355803))
/locus_tag="Gdia_0320"
/note="Binuclear center (active site) [active]"
/db_xref="CDD:29930"
misc_feature complement(order(355567..355569,355576..355578,
355651..355656,355756..355758,355789..355791,
355801..355803))
/locus_tag="Gdia_0320"
/note="K-pathway; other site"
/db_xref="CDD:29930"
misc_feature complement(order(355459..355464,355651..355653))
/locus_tag="Gdia_0320"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29930"
gene complement(356589..357326)
/locus_tag="Gdia_0321"
/db_xref="GeneID:6973713"
CDS complement(356589..357326)
/locus_tag="Gdia_0321"
/EC_number="2.1.1.17"
/note="PFAM: Methyltransferase type 11; Methyltransferase
type 12;
KEGG: gdi:GDI2102 putative phosphatidylethanolamine
N-methyltransferase"
/codon_start=1
/transl_table=11
/product="phosphatidylethanolamine N-methyltransferase"
/protein_id="YP_002274732.1"
/db_xref="GI:209542503"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:6973713"
/translation="MSEVLQDAPAETGSAAGIAGGYAPAPRSALDAEAVKAAYRRWAG
VYDALFGGVSAFGRKRAVAAVNGLPGSAVLEVGVGTGLALPHYRSDKRITGIDLSGDM
LDRARQRVARMNLRNVDALLEMDAEETRFADGSFDIAVAMFVASVVPNPRRLLCELKR
VVRPGGHILFVNHFLATGGVRLAVERGMARASHSLGWHPDFAIESLLPPADLAQATIQ
SVPPAGLFTLVTLPRDGAAPSVETMAG"
misc_feature complement(356814..357110)
/locus_tag="Gdia_0321"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(356949..356957,357033..357038,
357081..357101))
/locus_tag="Gdia_0321"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(357459..358463)
/locus_tag="Gdia_0322"
/db_xref="GeneID:6973714"
CDS complement(357459..358463)
/locus_tag="Gdia_0322"
/EC_number="6.3.2.3"
/note="catalyzes the second step in the glutathione
biosynthesis pathway, where it synthesizes ATP +
gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate +
glutathione"
/codon_start=1
/transl_table=11
/product="glutathione synthetase"
/protein_id="YP_002274733.1"
/db_xref="GI:209542504"
/db_xref="InterPro:IPR004215"
/db_xref="InterPro:IPR004218"
/db_xref="InterPro:IPR006284"
/db_xref="InterPro:IPR011761"
/db_xref="InterPro:IPR013651"
/db_xref="GeneID:6973714"
/translation="MSRPLKVAVQMDPLAGIDINGDSTFALMLEAQARGYELFVYHVQ
GLSLREGRTDGHAGGTRTERLTARARPARVQRVAGDHAALGEERVLDLSGMDVILMRQ
DPPFDMAYITATHMLEHVHGTGPGRALVVNDPESVRNAPEKLLVTHYPDLMPPTLVTW
DVQAIRDFRAQWRDIIVKPLFGNGGAGVFRIREDDENLNSLLEMHFARSREPLMIQRY
EAAVRRGDKRIILADGQPIGAINRVPAQGEARSNMHVGGKAAKVELTPRDREICEAIG
PMLREKGLIFVGIDVIGDWLTEINVTSPTGLQEIDRFDDINSAGLIWDCILRRLDGGA
"
misc_feature complement(357474..358454)
/locus_tag="Gdia_0322"
/note="glutathione synthetase; Provisional; Region:
PRK05246"
/db_xref="CDD:179971"
misc_feature complement(358050..358451)
/locus_tag="Gdia_0322"
/note="Prokaryotic glutathione synthetase, N-terminal
domain; Region: GSH-S_N; pfam02951"
/db_xref="CDD:190485"
misc_feature complement(357522..358040)
/locus_tag="Gdia_0322"
/note="Prokaryotic glutathione synthetase, ATP-grasp
domain; Region: GSH-S_ATP; pfam02955"
/db_xref="CDD:202486"
gene complement(358556..359098)
/locus_tag="Gdia_0323"
/db_xref="GeneID:6973715"
CDS complement(358556..359098)
/locus_tag="Gdia_0323"
/note="TIGRFAM: transcription elongation factor GreB;
PFAM: transcription elongation factor GreA/GreB domain
protein;
KEGG: gdi:GDI2104 putative transcription elongation factor
GreB"
/codon_start=1
/transl_table=11
/product="transcription elongation factor GreB"
/protein_id="YP_002274734.1"
/db_xref="GI:209542505"
/db_xref="InterPro:IPR001437"
/db_xref="InterPro:IPR006358"
/db_xref="GeneID:6973715"
/translation="MSDDDNDDDDAAPRRLEGVSRYVTPAGMAAMRGELNALLRDERP
RIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFLTRRIEKAIVVDPAAQTRRDR
VFFGATVTYVTEDDTERTVVIVGVDESDLAAGQVSLASPVARALLGGRVGDEVRLLTP
AGAEMIEILRIAYPAPAEMV"
misc_feature complement(358577..359050)
/locus_tag="Gdia_0323"
/note="transcription elongation factor GreB; Reviewed;
Region: greB; PRK01885"
/db_xref="CDD:179345"
misc_feature complement(358826..359035)
/locus_tag="Gdia_0323"
/note="Transcription elongation factor, N-terminal;
Region: GreA_GreB_N; pfam03449"
/db_xref="CDD:190636"
misc_feature complement(358580..358798)
/locus_tag="Gdia_0323"
/note="Transcription elongation factor, GreA/GreB, C-term;
Region: GreA_GreB; pfam01272"
/db_xref="CDD:201702"
gene complement(359212..360111)
/locus_tag="Gdia_0324"
/db_xref="GeneID:6973716"
CDS complement(359212..360111)
/locus_tag="Gdia_0324"
/note="PFAM: Aldose 1-epimerase;
KEGG: gdi:GDI2105 putative aldose 1-epimerase
(mutarotase)"
/codon_start=1
/transl_table=11
/product="aldose 1-epimerase"
/protein_id="YP_002274735.1"
/db_xref="GI:209542506"
/db_xref="InterPro:IPR008183"
/db_xref="GeneID:6973716"
/translation="MIELTAGTGRLGLLPELGGAVAYWKSRDICVLHAVSDANLLAQR
GRAVSGYPLVPFSNRVANGHFRFEGTEYRMKPNFGGESNTLHGNGWEHPWQLELLADD
SATLVLDWHPPYEQVTGQVIGQWPFAYRAQLRFDLREDSLSIGMLIENTDLRSQPVGM
GFHPYFPRRSGLQLGFAAETVWTNDEHHLPALRVPATGDWSFEHMHAVTTQDIDNCYA
GWERAAFLRWPNEGLALTIEADDPFRHLVLFTPPDKPFIAVEPVTNMNDAFNHSGVID
RGVHVLAPGAKLEGHIRIALMAC"
misc_feature complement(359224..360108)
/locus_tag="Gdia_0324"
/note="Galactose mutarotase and related enzymes
[Carbohydrate transport and metabolism]; Region: GalM;
COG2017"
/db_xref="CDD:32200"
misc_feature complement(359227..360084)
/locus_tag="Gdia_0324"
/note="aldose 1-epimerase, similar to Escherichia coli
YphB; Region: Aldose_epim_Ec_YphB; cd09021"
/db_xref="CDD:185698"
misc_feature complement(order(359332..359334,359368..359370,
359470..359472,359617..359619,359623..359625,
359854..359856,359935..359937))
/locus_tag="Gdia_0324"
/note="active site"
/db_xref="CDD:185698"
misc_feature complement(order(359332..359334,359623..359625))
/locus_tag="Gdia_0324"
/note="catalytic residues [active]"
/db_xref="CDD:185698"
gene complement(360161..362392)
/locus_tag="Gdia_0325"
/db_xref="GeneID:6973717"
CDS complement(360161..362392)
/locus_tag="Gdia_0325"
/note="The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. The beta-hairpin of the
Uvr-B subunit is inserted between the strands, where it
probes for the presence of a lesion"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit B"
/protein_id="YP_002274736.1"
/db_xref="GI:209542507"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR001943"
/db_xref="InterPro:IPR004807"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:6973717"
/translation="MPAPASKKTRRPDPSDEIVTFQPERQPPKEKTRRLTIQSPYEPA
GDQPRAIGELVAGVEGGERDQVLLGVTGSGKTFTMAKIIEATQKPTLILAPNKTLAAQ
LYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRHAATQAL
LERNDVIIVASVSCIYGIGSVETYSRMVVRLEVGGEIDRDRLVKALVDLQYRRNDAAF
QRGTFRVRGESVDVFPVQNEDRAWRISLFGDEIDAITEFDPLTGDKTGDLQEVSIYAN
SHYVTPRPTLNQAVIGIKHELRQRLNDLTEEGKLLEAERLQQRTTFDLEMIETTGVCK
GIENYSRYLSGRQPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDFARKSILS
EFGFRLPSCLDNRPLKFAEWDLFRPQTIFVSATPGPWEMERVGGVFAEQVIRPTGLID
PVTDIRPVERQVDDLLAECRLTIAAGGRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHS
DVDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLV
QTIGRAARNVDGRVVLYADKMTDSLRYAIEETARRREKQSAWNAAHGITPQSVRKQIG
EALSSVFEQDYVTVAPTKDGDVAEFVGKDLGSAIAELEKRMRAAAADLEFETAARLRD
EIKRLEALELGLDPVPVPVSTAGTGRPPRRKAGKGPEPLGPGGGGYDPSKGRGPRRRG
GGR"
misc_feature complement(360308..362284)
/locus_tag="Gdia_0325"
/note="excinuclease ABC subunit B; Provisional; Region:
PRK05298"
/db_xref="CDD:180000"
misc_feature complement(<362006..362206)
/locus_tag="Gdia_0325"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(362165..362179)
/locus_tag="Gdia_0325"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(360644..361018)
/locus_tag="Gdia_0325"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(360788..360796,360869..360874,
360932..360943))
/locus_tag="Gdia_0325"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(360671..360673,360680..360682,
360692..360694,360770..360772))
/locus_tag="Gdia_0325"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(360518..360649)
/locus_tag="Gdia_0325"
/note="Ultra-violet resistance protein B; Region: UvrB;
pfam12344"
/db_xref="CDD:204889"
gene 362505..363314
/locus_tag="Gdia_0326"
/db_xref="GeneID:6973718"
CDS 362505..363314
/locus_tag="Gdia_0326"
/note="PFAM: Exonuclease RNase T and DNA polymerase III;
SMART: Exonuclease;
KEGG: gdi:GDI2107 putative exodeoxyribonuclease"
/codon_start=1
/transl_table=11
/product="Exonuclease RNase T and DNA polymerase III"
/protein_id="YP_002274737.1"
/db_xref="GI:209542508"
/db_xref="InterPro:IPR006055"
/db_xref="InterPro:IPR013520"
/db_xref="GeneID:6973718"
/translation="MDGSIPPSGSPPTPFVRVIDLETSGRNAADGGIVEIGWQDVARD
ADGTWALAGPPGARLTHPGGPITPQTMAIHHITDAHVRDAPPFAEIAPDILHPADRPA
AMAAHRASFEQGWIRGSLPPALTTGLHWICTYKCALRLWPDEPGHSNQGLRHSRRPAG
LERALGDPPHRAGPDAYVTAHHLRDMLALATVEQLLRWSREPALLTRVPHGPLRGRQI
RNLATGDLDRLLAEDRRRGPDLAFTLRTERARRAGLNETTLAPPVQQAFRF"
misc_feature 362553..363239
/locus_tag="Gdia_0326"
/note="exodeoxyribonuclease X; Provisional; Region:
PRK07983"
/db_xref="CDD:181186"
misc_feature 362556..363056
/locus_tag="Gdia_0326"
/note="DEDDh 3'-5' exonuclease domain family; Region:
DEDDh; cd06127"
/db_xref="CDD:176648"
misc_feature order(362562..362573,362577..362579,362823..362828,
362832..362840,363012..363014,363027..363029)
/locus_tag="Gdia_0326"
/note="active site"
/db_xref="CDD:176648"
misc_feature order(362562..362573,362577..362579,362823..362828,
362832..362837,363012..363014,363027..363029)
/locus_tag="Gdia_0326"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176648"
misc_feature order(362562..362564,362568..362570,362838..362840,
363012..363014,363027..363029)
/locus_tag="Gdia_0326"
/note="catalytic site [active]"
/db_xref="CDD:176648"
gene complement(363279..363590)
/locus_tag="Gdia_0327"
/db_xref="GeneID:6973719"
CDS complement(363279..363590)
/locus_tag="Gdia_0327"
/note="KEGG: gdi:GDI2108 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274738.1"
/db_xref="GI:209542509"
/db_xref="GeneID:6973719"
/translation="MNETSDADREPLSPPLSRPLSGWTRERRAIVLWSQSGSLIVVSG
NVVGRHVGDPAGSILFAIGFGCILWALKILIENWTELRRPSAGLTKPSLKAKGLLNRR
R"
gene complement(363596..364960)
/locus_tag="Gdia_0328"
/db_xref="GeneID:6973720"
CDS complement(363596..364960)
/locus_tag="Gdia_0328"
/note="PFAM: ABC-1 domain protein;
KEGG: gdi:GDI2109 putative ubiquinone biosynthesis protein
UbiB"
/codon_start=1
/transl_table=11
/product="ABC-1 domain-containing protein"
/protein_id="YP_002274739.1"
/db_xref="GI:209542510"
/db_xref="InterPro:IPR004147"
/db_xref="GeneID:6973720"
/translation="MAEERDLDNTGLFGEFRRMVRTSGAVGGIAARIAGHKMGIRTDR
TAHAGDLKSILGGLKGPLMKGAQLLSTIPGALPEEYAVELAQLQANAPAMGWSFVRRR
MASELGRDWERRFRTFEHEAAAAASLGQVHRAVLPDGRLVACKLQYPDMQATVDSDLR
QFRMAVGLYYRIDSTIQQDDVLVELEARLREELDYLREAANLRLYRLMLADRPDVSVP
APVEDMTTRRLLVMDWLEGRGVQKVLDTNPSQDQRNAMARALFHAWYVPLYRYGVIHG
DPHMGNFTVRGDYGLNLLDLGAIRIFPARFVQGIIDLYRALERNDEDLAYHAYQAWGF
TNMSRETMRILNEWARFIYEPLMQDRVRPIQENDDPQFGRAVAERVYAGLKRTGGVRP
PREFVLVDRSAIGLGSVFLRLGAKLNWYRLFQELIADFDAAQLAARQAEAIRVAGVPT
PIEA"
misc_feature complement(<363755..364810)
/locus_tag="Gdia_0328"
/note="Predicted unusual protein kinase [General function
prediction only]; Region: AarF; COG0661"
/db_xref="CDD:31005"
misc_feature complement(<364070..364783)
/locus_tag="Gdia_0328"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature complement(order(364076..364081,364109..364111,
364115..364120,364130..364132,364256..364267,
364307..364309))
/locus_tag="Gdia_0328"
/note="active site"
/db_xref="CDD:88612"
misc_feature complement(order(364076..364081,364109..364111,
364115..364120,364130..364132,364256..364267,
364307..364309))
/locus_tag="Gdia_0328"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88612"
gene complement(364962..366809)
/locus_tag="Gdia_0329"
/db_xref="GeneID:6973721"
CDS complement(364962..366809)
/locus_tag="Gdia_0329"
/note="TIGRFAM: oligoendopeptidase, pepF/M3 family;
PFAM: peptidase M3A and M3B thimet/oligopeptidase F;
Oligopeptidase F;
KEGG: gdi:GDI2110 group B oligopeptidase PepB"
/codon_start=1
/transl_table=11
/product="oligoendopeptidase"
/protein_id="YP_002274740.1"
/db_xref="GI:209542511"
/db_xref="InterPro:IPR001567"
/db_xref="InterPro:IPR006025"
/db_xref="InterPro:IPR011977"
/db_xref="InterPro:IPR013647"
/db_xref="GeneID:6973721"
/translation="MSGQNLSAWIDGPCGGRCGREAEGGATAGTAGDLPRWDLGDLYD
SPESDRLRTDLNQAEADAAAFADVWRGRLAGASPAALAEAIAEYQRIDEVLGRAASYA
QLLFAGDSSDAAIGRFSQSVNERLTDISTHLLFFTLELNRIGDDEMAARLADPALAVW
APFLRDLRVFRPHQLSDEIEQVLHEKSVTGAAAWCRLFDETMAGLRIPLDDSRLTVGE
ALNRLSDPDRAVRERAARAIGAVFGDNIRLFSLITNTLAKDKAISDSLRHYPRPGSYR
NRSNMVEDEVVDALVQAVTTDYPRLSHRYYALKAKWLGLEKLEHWDRNAPLPSADDRI
IPWDQATRQVLAAYEAFDPRMGTVARRFFDHAWIDAAPAPGKASGAFAHPTVPSVHPY
LLLNYHGRTRDVMTLAHELGHGVHQVLAAPHGYLMSGTPLTLAETASVFGEMLTFRAL
LDAETDPARRRLMLAAKVEDMLNTVVRQIAFYRFETLVHAERKSGELLPERIGAIWRQ
VQTESLGPAFNFTPDYDVYWTYVPHFIHSPFYVYAYAFGDCLVNALYGVFQSGHAGFQ
DKYLDMLRAGGTMRHRELLAPFGLDAADPGFWRKGLDVIAGFIDELERA"
misc_feature complement(364968..366704)
/locus_tag="Gdia_0329"
/note="oligoendopeptidase, pepF/M3 family; Region:
M3_fam_3; TIGR02290"
/db_xref="CDD:162797"
misc_feature complement(364995..366413)
/locus_tag="Gdia_0329"
/note="Peptidase family M3B Oligopeptidase F (PepF);
Region: M3B_PepF_5; cd09610"
/db_xref="CDD:189017"
misc_feature complement(order(365178..365180,365190..365192,
365211..365213,365502..365504,365571..365573,
365580..365585))
/locus_tag="Gdia_0329"
/note="active site"
/db_xref="CDD:189017"
misc_feature complement(order(365502..365504,365571..365573,
365583..365585))
/locus_tag="Gdia_0329"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:189017"
gene complement(366983..371524)
/locus_tag="Gdia_0330"
/db_xref="GeneID:6973722"
CDS complement(366983..371524)
/locus_tag="Gdia_0330"
/EC_number="1.4.7.1"
/note="PFAM: glutamine amidotransferase class-II;
glutamate synthase alpha subunit domain protein;
ferredoxin-dependent glutamate synthase; glutamate
synthase;
KEGG: gdi:GDI2111 putative glutamate synthase [NADPH]
large chain precursor"
/codon_start=1
/transl_table=11
/product="glutamate synthase"
/protein_id="YP_002274741.1"
/db_xref="GI:209542512"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR002489"
/db_xref="InterPro:IPR002932"
/db_xref="InterPro:IPR006982"
/db_xref="GeneID:6973722"
/translation="MDQFPQQDVTPDRDFVAEWHDNARRIAGLYDSSQEHDACGVGLV
ASLDGRKRREVVEAGIAALKAVWHRGAVDADGKTGDGAGIHVEIPQDFFADAIHSGGE
GCVDSQIAVGMVFLPKTDLSAQERCRQIIETEILAFGYGIYGWRQVPIDTACIGEKAN
ATRPEIEQIMIRNLLGHDEETFERDLYVIRRRIEKSAIANQVDLYICSMSCRSVIYKG
MFLAEHLTNFYPDLLDERFVSRFAIYHQRYSTNTFPTWKLAQPFRRLAHNGEINTISG
NANWMKSHETRLADPVLDPYMEDLKPVVQAGGSDTATLDNVYELLTFAGRDAPMAKAL
MIPASVGENSAMPQKHKDMYAYCNAVMEPWDGPAALCATDGRWVVAGLDRSGLRPLRY
TVTANGLLIVGSETGMVTVPEADIVRRGRLGPGQTIGLDLQEGKLYGNEALLDLMSAR
RDFGAWVRHIQKIGSVVRADVQEPVLYSRDELRRRQLAVGTTLEELETILHPMVESAA
EAIGSMGDDAPLAVLSSRYRGLAHYFRQAFSQVTNPPIDSLRETRVMSLVTRLGNLGN
ILEESEAQCDLLQLPSPVLTTGEFEALRSFCGDSGFVIDCTFPAADGEAGLRDAIARI
RQEAEDRVREGCTHLFLTDQAQSADRAYIPMILATAAVHTHLVRHSLRTFTSLNVRSA
EALDVHAIAVTIGVGATSVNPYLAQESIADRQRRGLFGDMSLREAVERYRKAVDKGLL
KVMSKMGISIVSAYRGGYNFEAIGLSRALTAEFFPGMPSRISGIGLSGISTNVLSFHQ
TAWNQAITPLPVGGQYKLRRNGEVHAFDGNLIHMLQTAVASDSFSIYRRYADAVRRQP
PVALRDLLDFKGGRTPIPVEAVESITQLRKRLIAPGISLGALSPEAHETLSIAMNRIG
ARSDSGEGGEDPARARPRSNGDNASSAIKQIASGRFGVTAQYLNDCREIEIKMAQGAK
PGEGGQLPGFKVTGLIAKLRHATPGVTLISPPPHHDIYSIEDLAQLIYDLKQINPEAT
VTVKLVARSGIGTIAAGVAKAKADAILISGHSGGTGASPQSSVKYAGLPWELGLAEAH
QVLMLNRLRHRVKLRTDGGLKTGRDVVIAAMLGAEEFGIGTASLVAMGCIMVRQCHSN
TCPVGVCTQDEALREKFEGTPEKVINLFSFIAEDVRNILASLGFSTLNEVIGRTDLLR
QVSRGADYLDDLDLNSLLAQADPGPHARYCTLEGRNEVPETLDGQMIADARPLFDHGE
KMQLHYNVQNTHRAIGTRISSLIVRQFGMTRLAPGHLTVRLRGSAGQSLGAFAVQGLK
LEVLGDANDYVGKGLSGATIVVRQPASSNLVSNENAIIGNTVLYGATSGALYAAGQAG
ERFAVRNSGAVAVVEGCGSNGCEYMTGGTVVILGEAGDNFGAGFTGGMAFVYDEKGTF
EQRINPDTLLWERVADPKWEAVLRDLVQTHARETHSRYAELLLHKWDQVLPRFWHLVP
RDYAKAIGYVPATEAARSA"
misc_feature complement(367046..371446)
/locus_tag="Gdia_0330"
/note="glutamate synthase subunit alpha; Provisional;
Region: gltB; PRK11750"
/db_xref="CDD:183297"
misc_feature complement(370172..371410)
/locus_tag="Gdia_0330"
/note="Glutamine amidotransferases class-II (Gn-AT),
glutamate synthase (GltS)-type. GltS is a homodimer that
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine, an important step in ammonia assimilation in
bacteria, cyanobacteria and plants. The...; Region: GltS;
cd00713"
/db_xref="CDD:48477"
misc_feature complement(order(370595..370597,370715..370723,
370784..370786,371318..371320,371408..371410))
/locus_tag="Gdia_0330"
/note="active site"
/db_xref="CDD:48477"
misc_feature complement(order(370766..370768,371024..371026,
371036..371038,371069..371071,371084..371086,
371090..371092,371129..371131,371141..371143,
371150..371152))
/locus_tag="Gdia_0330"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48477"
misc_feature complement(369224..370081)
/locus_tag="Gdia_0330"
/note="Glutamate synthase central domain; Region:
Glu_syn_central; pfam04898"
/db_xref="CDD:203116"
misc_feature complement(367910..369007)
/locus_tag="Gdia_0330"
/note="Glutamate synthase (GltS) FMN-binding domain. GltS
is a complex iron-sulfur flavoprotein that catalyzes the
reductive synthesis of L-glutamate from 2-oxoglutarate and
L-glutamine via intramolecular channelling of ammonia, a
reaction in the plant, yeast...; Region: GltS_FMN;
cd02808"
/db_xref="CDD:73370"
misc_feature complement(order(368081..368083,368096..368098,
368114..368116,368138..368143,368204..368206,
368210..368212,368327..368335,368423..368425,
368549..368551,368609..368611,368627..368629,
368693..368695,368762..368764,368843..368854))
/locus_tag="Gdia_0330"
/note="active site"
/db_xref="CDD:73370"
misc_feature complement(order(368138..368143,368204..368206,
368210..368212,368330..368335,368423..368425,
368627..368629,368693..368695,368762..368764,
368843..368854))
/locus_tag="Gdia_0330"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73370"
misc_feature complement(order(368327..368332,368549..368551,
368609..368611))
/locus_tag="Gdia_0330"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73370"
misc_feature complement(order(368081..368083,368096..368098,
368114..368116))
/locus_tag="Gdia_0330"
/note="3Fe-4S cluster binding site [ion binding]; other
site"
/db_xref="CDD:73370"
misc_feature complement(367040..367789)
/locus_tag="Gdia_0330"
/note="gltb_C. This domain is found at the C-terminus of
the large subunit (gltB) of glutamate synthase (GltS).
GltS encodes a complex iron-sulfur flavoprotein that
catalyzes the synthesis of L-glutamate from L-glutamine
and 2-oxoglutarate. It requires the...; Region: gltB_C;
cd00982"
/db_xref="CDD:29611"
misc_feature complement(order(367202..367213,367256..367258,
367265..367267,367274..367276,367313..367315,
367319..367324,367331..367342,367367..367369,
367373..367378,367385..367399,367424..367426,
367433..367435,367442..367444,367451..367462,
367517..367519,367526..367528,367541..367549,
367583..367585,367595..367600,367607..367609,
367664..367669,367676..367678,367685..367690))
/locus_tag="Gdia_0330"
/note="domain interface; other site"
/db_xref="CDD:29611"
gene complement(371530..372984)
/locus_tag="Gdia_0331"
/db_xref="GeneID:6973723"
CDS complement(371530..372984)
/locus_tag="Gdia_0331"
/note="function undetermined; similar to glutamate
synthase beta subunit and related oxidoreductases which
transfer electrons from NADPH to an acceptor protein or
protein domain"
/codon_start=1
/transl_table=11
/product="putative oxidoreductase"
/protein_id="YP_002274742.1"
/db_xref="GI:209542513"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000759"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR006006"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:6973723"
/translation="MAERMLKFVSVAQSQPDKRPAAERNADFDEIYRAFAVGKAEQQA
SRCSQCGVPFCSIHCPLGNNIPDWLKMTAEGRLEEAYALSSATNNFPEICGRICPQDR
LCEGNCVIEKGFESVTIGAVERFITDTAFASGWVEPIRPPVERQTSIGIIGAGPGGLA
AAMQLREQGHQVHVYDRYDRVGGLMIYGIPGFKLEKDIVARRHLYLEESGVRFHLGQN
VADADGEGQVSFATLGARHDAVLIATGVYKSRDIGGPGAGLAGIVKALDYLTVSNRLS
LGDDVAASESAMLNAKGKSVVVIGGGDTAMDCVRTAIRQGAKSVKCLYRRDRANMPGS
IREVKNAEEEGVEFVWLAAPEAFLGDGTVTGVRAVRMKLGLPDASGRQSVEPVEDSSF
VLEAGLVIKALGFDPEPLPTLWGQPDLAVSRWGTLRIDHESFMTSLPGVFAAGDIVRG
ASLVVWAIRDGRDAATQMHRWLENRAAACAQAAE"
misc_feature complement(371560..372969)
/locus_tag="Gdia_0331"
/note="dihydropyrimidine dehydrogenase subunit A;
Provisional; Region: PRK11749"
/db_xref="CDD:183296"
misc_feature complement(371881..372102)
/locus_tag="Gdia_0331"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene complement(373194..374117)
/locus_tag="Gdia_0332"
/db_xref="GeneID:6973724"
CDS complement(373194..374117)
/locus_tag="Gdia_0332"
/EC_number="1.6.5.3"
/note="PFAM: NAD-dependent epimerase/dehydratase;
short-chain dehydrogenase/reductase SDR; 3-beta
hydroxysteroid dehydrogenase/isomerase;
dTDP-4-dehydrorhamnose reductase; Male sterility domain;
KEGG: gdi:GDI2113 putative NAD-dependent
epimerase/dehydratase"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase (ubiquinone)"
/protein_id="YP_002274743.1"
/db_xref="GI:209542514"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:6973724"
/translation="MATRKVAAVIGGSGFLGRYVVRRLAEDGYVVRVAARRADLAAAL
RPLGDVGQIVPLGASILDEDSLVPVVESAQVVVNLVGILAERGRATFQAVHVDGAARV
ARLAASAGVGRLLHVSAIGASPDSRSAYGRSKAAGEEAVLRNMPEATIVRPSILFGPE
DRFTNLFAALARYSPVMPVYGAATRIQPVYAADVAEGIRRILAGEGHSGEIYEFGGPA
IWTMEGVMRWIVATLGRSRLIFPMPGALAWWQAMWLEHLPGRMLTRDQLTMLSVDNVA
SEGTPGLRLLGIDAVPMEMIAPSYLSRYKIT"
misc_feature complement(373296..374105)
/locus_tag="Gdia_0332"
/note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs;
Region: NDUFA9_like_SDR_a; cd05271"
/db_xref="CDD:187579"
misc_feature complement(373281..374096)
/locus_tag="Gdia_0332"
/note="Predicted nucleoside-diphosphate-sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: COG0702"
/db_xref="CDD:31046"
misc_feature complement(order(373650..373661,373716..373718,
373728..373730,373761..373769,373836..373838,
373875..373883,374007..374015,374070..374081,
374085..374087))
/locus_tag="Gdia_0332"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187579"
misc_feature complement(order(373716..373718,373728..373730))
/locus_tag="Gdia_0332"
/note="active site"
/db_xref="CDD:187579"
gene 374369..374455
/locus_tag="Gdia_R0005"
/note="tRNA-Leu2"
/db_xref="GeneID:6973725"
tRNA 374369..374455
/locus_tag="Gdia_R0005"
/product="tRNA-Leu"
/db_xref="GeneID:6973725"
gene 374635..374721
/locus_tag="Gdia_R0006"
/note="tRNA-Leu3"
/db_xref="GeneID:6973726"
tRNA 374635..374721
/locus_tag="Gdia_R0006"
/product="tRNA-Leu"
/db_xref="GeneID:6973726"
gene 374949..375581
/locus_tag="Gdia_0333"
/db_xref="GeneID:6973727"
CDS 374949..375581
/locus_tag="Gdia_0333"
/note="PFAM: 3'-5' exonuclease;
KEGG: gdi:GDI2114 putative ribonuclease D"
/codon_start=1
/transl_table=11
/product="3'-5' exonuclease"
/protein_id="YP_002274744.1"
/db_xref="GI:209542515"
/db_xref="InterPro:IPR002562"
/db_xref="GeneID:6973727"
/translation="MTAPATPSILLHRGDLADDVVFHGSIAVDTEAMGLNPHRDRLCL
VQISAGDGSAHLVQILPGTPSPNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPV
ICTKIASKLVRTFTERHGLAQLCRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVL
HLHALWTKLEALLHREGRRDLAQACYDFLPTRARLDLLGYEDPDIFAHRA"
misc_feature 374991..375521
/locus_tag="Gdia_0333"
/note="DEDDy 3'-5' exonuclease domain of Ribonuclease D
and similar proteins; Region: RNaseD_exo; cd06142"
/db_xref="CDD:176654"
misc_feature 375015..>375563
/locus_tag="Gdia_0333"
/note="Ribonuclease D [Translation, ribosomal structure
and biogenesis]; Region: Rnd; COG0349"
/db_xref="CDD:30697"
misc_feature order(375033..375044,375192..375197,375201..375209,
375306..375311,375408..375410,375420..375422)
/locus_tag="Gdia_0333"
/note="putative active site [active]"
/db_xref="CDD:176654"
misc_feature order(375033..375035,375039..375041,375207..375209,
375408..375410,375420..375422)
/locus_tag="Gdia_0333"
/note="catalytic site [active]"
/db_xref="CDD:176654"
misc_feature order(375036..375044,375192..375197,375201..375206,
375306..375311,375408..375410,375420..375422)
/locus_tag="Gdia_0333"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:176654"
gene 375652..376713
/locus_tag="Gdia_0334"
/db_xref="GeneID:6973728"
CDS 375652..376713
/locus_tag="Gdia_0334"
/EC_number="5.3.1.13"
/note="KEGG: gdi:GDI2115 putative arabinose 5-phosphate
isomerase;
TIGRFAM: KpsF/GutQ family protein;
PFAM: CBS domain containing protein; sugar isomerase
(SIS)"
/codon_start=1
/transl_table=11
/product="KpsF/GutQ family protein"
/protein_id="YP_002274745.1"
/db_xref="GI:209542516"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR001347"
/db_xref="InterPro:IPR004800"
/db_xref="GeneID:6973728"
/translation="MTQPAFHDDAGAPADEARIQSDITAACRVLARESDGLARLAAAL
RAPAVSDEPEGITPLGTAFARAVDAFSTLAGRVIVTGIGKSGHVGRKIQSTLASTGTP
SVFVHPSEASHGDLGMIQRGDAVLALSNSGETAELADIVAHARRYGLLLAAITAAPDS
TLARAADIALIVPKAPEACPMGLAPTTSTTMQMALGDALAVVLLERRNFSATDFGVFH
PGGRLGTRLRRVSDLMHRGAAMPLGTPDIAMRQVIMEMTRKAFGCIGVVSPDGRLRGL
ITDGDLRRALDRDLDSTLAADIMNPTPLTTGPDVLAAEALRLMNARARPITSLFVVDA
AGLPVGILHIHDLLRAGVA"
misc_feature 375874..376680
/locus_tag="Gdia_0334"
/note="KpsF/GutQ family protein; Region: kpsF; TIGR00393"
/db_xref="CDD:129488"
misc_feature 375874..376257
/locus_tag="Gdia_0334"
/note="KpsF-like protein. KpsF is an arabinose-5-phosphate
isomerase which contains SIS (Sugar ISomerase) domains.
SIS domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. KpsF catalyzes the
reversible reaction of ribulose...; Region: SIS_Kpsf;
cd05014"
/db_xref="CDD:88409"
misc_feature order(375904..375906,376036..376038)
/locus_tag="Gdia_0334"
/note="putative active site [active]"
/db_xref="CDD:88409"
misc_feature 376360..376701
/locus_tag="Gdia_0334"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with KpsF/GutQ domains in the API [A5P (D-arabinose
5-phosphate) isomerase] protein. These APIs catalyze the
conversion of the pentose pathway...; Region:
CBS_pair_KpsF_GutQ_assoc; cd04604"
/db_xref="CDD:73104"
gene 376710..377519
/locus_tag="Gdia_0335"
/db_xref="GeneID:6973729"
CDS 376710..377519
/locus_tag="Gdia_0335"
/note="PFAM: protein of unknown function DUF1239;
KEGG: gdi:GDI2116 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274746.1"
/db_xref="GI:209542517"
/db_xref="InterPro:IPR010664"
/db_xref="GeneID:6973729"
/translation="MSASPPPPSRDPTAPRREDFARSADDVARQRTVLHHRTTRARHL
PNPDDIARRRMLVRWAKWVLPAAALALLGSIAAWPAIDRLVNAQRNALHEMENLRIES
GNMLGATYRGLDDHNRPYMITADQAQQVTPDRINLTGPVADTFTQGNDWLTIRSDQGV
YMQHEQLLDLTRNVVLYRADGVIMTGVTADMDLKQGIVASDQWVHAEGPFGVLDAQGF
ILSQHEGIGLFRGPGRLILNDDSHAHPPAATPSSAAPPASSTPPARTEPTR"
misc_feature <376989..377420
/locus_tag="Gdia_0335"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5375"
/db_xref="CDD:34939"
gene 377516..378604
/locus_tag="Gdia_0336"
/db_xref="GeneID:6973730"
CDS 377516..378604
/locus_tag="Gdia_0336"
/note="PFAM: OstA family protein;
KEGG: gdi:GDI2117 organic solvent tolerance protein"
/codon_start=1
/transl_table=11
/product="OstA family protein"
/protein_id="YP_002274747.1"
/db_xref="GI:209542518"
/db_xref="InterPro:IPR005653"
/db_xref="GeneID:6973730"
/translation="MTAFPKVATALLLGGVAACVAPMGARGQALDLSHGGQITVTAAG
GFDWDQKSQTVTAYDQAQAVRGNVTVTGDRLIAFYRKKAAAGAAQGGAPNNGAAAPAS
PPPAAQAPAPQAPATQSTGNGTDSGSNEVYRLNAIGHVHIFTDTDQAWGDKAIYDIDQ
SVMIMTGKAMKMVTPQDVLTARDSMEYYSQTRISIGRGNATVTTNDGRQIRADVLVGY
SAPAQPATQSPAQPPPSPPPGTQPGAAPGTGKDPLTSSGKLEKVNAFGHVFVRTQTET
VTGDRGVYVPDTGIARIVGNVHITRGQNQINGAAAIVNMHTGIATMTERAGSRVSGLI
VPNEANSSPGGARPTQAGTKPGPAGKTP"
sig_peptide 377516..377599
/locus_tag="Gdia_0336"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.899 at
residue 28"
misc_feature <377885..378088
/locus_tag="Gdia_0336"
/note="OstA-like protein; Region: OstA; cl00844"
/db_xref="CDD:193952"
misc_feature <378284..378469
/locus_tag="Gdia_0336"
/note="OstA-like protein; Region: OstA; cl00844"
/db_xref="CDD:193952"
gene 378601..379392
/locus_tag="Gdia_0337"
/db_xref="GeneID:6973731"
CDS 378601..379392
/locus_tag="Gdia_0337"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: gdi:GDI2118 putative ABC transporter ATP-binding
protein in RpoN region"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_002274748.1"
/db_xref="GI:209542519"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6973731"
/translation="MNEIPYELAGDMQGTAIAHGLPAADGLIANGIGKTYKKRPVVRN
VSIQVHRGEAVGLLGPNGAGKTTSFYMIVGLVQPDTGAITLDGTDITQLPMYRRARLG
IGYLPQEASIFRGLNVEQNIMAALEVVEADPERREAMLDGLLGEFGISHLRRAPSLAL
SGGERRRLEIARALASQPHYILLDEPLAGIDPIAVGEIRDLVSHLKDRGIGVLITDHN
VRETLEVIDRAYIMHSGQVLMEGRPEEIVANEDVRRVYLGENFSL"
misc_feature 378679..379389
/locus_tag="Gdia_0337"
/note="ABC-type (unclassified) transport system, ATPase
component [General function prediction only]; Region:
YhbG; COG1137"
/db_xref="CDD:31332"
misc_feature 378679..379374
/locus_tag="Gdia_0337"
/note="The ABC transporters belonging to the YhbG family
are similar to members of the Mj1267_LivG family, which is
involved in the transport of branched-chain amino acids.
The genes yhbG and yhbN are located in a single operon and
may function together in...; Region: ABC_YhbG; cd03218"
/db_xref="CDD:72977"
misc_feature 378775..378798
/locus_tag="Gdia_0337"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72977"
misc_feature order(378784..378789,378793..378801,378922..378924,
379150..379155,379249..379251)
/locus_tag="Gdia_0337"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72977"
misc_feature 378913..378924
/locus_tag="Gdia_0337"
/note="Q-loop/lid; other site"
/db_xref="CDD:72977"
misc_feature 379078..379107
/locus_tag="Gdia_0337"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72977"
misc_feature 379138..379155
/locus_tag="Gdia_0337"
/note="Walker B; other site"
/db_xref="CDD:72977"
misc_feature 379162..379173
/locus_tag="Gdia_0337"
/note="D-loop; other site"
/db_xref="CDD:72977"
misc_feature 379237..379257
/locus_tag="Gdia_0337"
/note="H-loop/switch region; other site"
/db_xref="CDD:72977"
gene 379403..380779
/locus_tag="Gdia_0338"
/db_xref="GeneID:6973732"
CDS 379403..380779
/locus_tag="Gdia_0338"
/note="sigma factors are initiation factors that promote
the attachment of RNA polymerase to specific initiation
sites and are then released; sigma 54 factor is
responsible for the expression of enzymes involved in
nitrogen assimilation and metabolism; the rhizobia often
have 2 copies of this sigma factor; in Rhizobium etli
RpoN1 shown to be involved in the assimilation of several
nitrogen and carbon sources during free-living aerobic
growth and RpoN2 is involved in symbiotic nitrogen
fixation; in Bradyrhizobium both RpoN1 and N2 are
functional in free-living and symbiotic conditions, rpoN1
gene was regulated in response to oxygen"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-54"
/protein_id="YP_002274749.1"
/db_xref="GI:209542520"
/db_xref="InterPro:IPR000394"
/db_xref="InterPro:IPR006032"
/db_xref="InterPro:IPR007046"
/db_xref="InterPro:IPR007634"
/db_xref="GeneID:6973732"
/translation="MTIGPRLALRQAQTLVMTPQLRQAIHLLQLSNLDACSFIEQELE
RNPLLERANLAGLEELRPKVVAHGARHDPRLERVPDQDWAATTGTLPGPAPSLHERLA
QQVRLSWRDAGDRLVGAYLITLLDADGRLVPPTAVIAQSLGTTFDHVERVRQTMMQFE
PTGLFAHDLGECLAAQLRERDRLDPAMAVLLRHLDLLARRDLRRLQGLCGVDAEDLAD
MIAEVRTLSPRPARDFGDPAACSVIPDVLLQPAPDGDWMLELNPETMPSVVVNSALST
RVALRARREDRPFLNERLASANWLVRALQQRADTIIRVATAIMRRQRGFLDHGIGHLR
PLVLRDIAETVGLHESTVSRVTANKYIATPRGLFELKYFFTTAIPGRAGGADHSAEAI
RHRIKTLISQESDGKILSDDAIVTRLRKEGIDISRRTVAKYRDALRIPNSAQRKRDKA
LIGLKPEA"
misc_feature 379409..380743
/locus_tag="Gdia_0338"
/note="RNA polymerase factor sigma-54; Reviewed; Region:
PRK05932"
/db_xref="CDD:180314"
misc_feature 379415..379558
/locus_tag="Gdia_0338"
/note="Sigma-54 factor, Activator interacting domain
(AID); Region: Sigma54_AID; pfam00309"
/db_xref="CDD:201144"
misc_feature 379685..380215
/locus_tag="Gdia_0338"
/note="Sigma-54 factor, core binding domain; Region:
Sigma54_CBD; pfam04963"
/db_xref="CDD:147239"
misc_feature 380261..380743
/locus_tag="Gdia_0338"
/note="Sigma-54, DNA binding domain; Region: Sigma54_DBD;
pfam04552"
/db_xref="CDD:113327"
gene 380874..381461
/locus_tag="Gdia_0339"
/db_xref="GeneID:6973733"
CDS 380874..381461
/locus_tag="Gdia_0339"
/note="TIGRFAM: ribosomal subunit interface protein;
PFAM: sigma 54 modulation protein/ribosomal protein S30EA;
KEGG: gdi:GDI2120 sigma(54) modulation protein"
/codon_start=1
/transl_table=11
/product="sigma 54 modulation protein/30S ribosomal
protein S30EA"
/protein_id="YP_002274750.1"
/db_xref="GI:209542521"
/db_xref="InterPro:IPR003489"
/db_xref="GeneID:6973733"
/translation="MQISVAGKQIDLSDALKHRVTAHLDRLADKFFDRALDAQVTFSR
ARSFFTCDINLHAARGLTLRGEGEAADAHGAFDDAAEHIARRLRRYRERVNDHIRTLP
RRKTPEVGRSYILRPAESDGRVRGEAMHDTGPYATIVAERAAEIATLSVSEAVMRLDL
AASTLLMFRNSTSDQINVIYRRQDGNIGWLDPSPA"
misc_feature 380877..381152
/locus_tag="Gdia_0339"
/note="RaiA ('ribosome-associated inhibitor A', also known
as Protein Y (PY), YfiA, and SpotY, is a stress-response
protein that binds the ribosomal subunit interface and
arrests translation by interfering with aminoacyl-tRNA
binding to the ribosomal A site; Region: RaiA; cd00552"
/db_xref="CDD:29642"
misc_feature order(380883..380885,380889..380891,380895..380897,
380949..380951,380961..380963,380979..380984,
380994..380996,381006..381008,381033..381035,
381045..381056,381063..381065,381069..381071,
381078..381080,381084..381086,381093..381095,
381135..381140,381150..381152)
/locus_tag="Gdia_0339"
/note="30S subunit binding site; other site"
/db_xref="CDD:29642"
gene complement(381532..381795)
/locus_tag="Gdia_0340"
/db_xref="GeneID:6973734"
CDS complement(381532..381795)
/locus_tag="Gdia_0340"
/note="KEGG: gdi:GDI2121 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274751.1"
/db_xref="GI:209542522"
/db_xref="GeneID:6973734"
/translation="MRITTQNGRVVLQADQTSLPADVHHLTDTQLLSLGVSRMAYIKA
VVIEGQDVFAIHAADGTPMALTEDEATAIEAILQHEMVPALVH"
misc_feature complement(381535..381726)
/locus_tag="Gdia_0340"
/note="Protein of unknown function (DUF1150); Region:
DUF1150; pfam06620"
/db_xref="CDD:148304"
gene complement(381909..382397)
/locus_tag="Gdia_0341"
/db_xref="GeneID:6973735"
CDS complement(381909..382397)
/locus_tag="Gdia_0341"
/note="PFAM: heat shock protein Hsp20;
KEGG: gdi:GDI2122 putative small heat shock protein IbpA"
/codon_start=1
/transl_table=11
/product="heat shock protein Hsp20"
/protein_id="YP_002274752.1"
/db_xref="GI:209542523"
/db_xref="InterPro:IPR002068"
/db_xref="GeneID:6973735"
/translation="MSGRLFASPMFLGFDHLEQMLERASKGTADGYPPYNIEQISPTA
LRITLAVAGFVMEDLQITQEDNQLVIRGRQTDDSQGRVFLHRGIAARQFQKAFVLAEG
IEVGNAWLDNGLLHIDLLRPQPEVRVRRIEITQGRASAPPAEIDLPKVRAQRVVRVIE
ED"
misc_feature complement(381999..382361)
/locus_tag="Gdia_0341"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:30420"
misc_feature complement(382035..382301)
/locus_tag="Gdia_0341"
/note="Alpha-crystallin domain (ACD) found in Escherichia
coli inclusion body-associated proteins IbpA and IbpB, and
similar proteins. IbpA and IbpB are 16 kDa small heat
shock proteins (sHsps). sHsps are molecular chaperones
that suppress protein aggregation...; Region:
ACD_IbpA-B_like; cd06470"
/db_xref="CDD:107227"
misc_feature complement(order(382056..382061,382113..382115,
382239..382244,382248..382250,382254..382256,
382281..382295))
/locus_tag="Gdia_0341"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107227"
gene 382737..385748
/locus_tag="Gdia_0342"
/db_xref="GeneID:6973736"
CDS 382737..385748
/locus_tag="Gdia_0342"
/note="TIGRFAM: CRISPR-associated protein, Csn1 family;
KEGG: gdi:GDI2123 hypothetical protein"
/codon_start=1
/transl_table=11
/product="Csn1 family CRISPR-associated protein"
/protein_id="YP_002274753.1"
/db_xref="GI:209542524"
/db_xref="InterPro:IPR010145"
/db_xref="GeneID:6973736"
/translation="MIDESLTFGIDLGIGSCGWAVLRRPSAFGRKGVIEGMGSWCFDV
PETSKERTPTNQIRRSNRLLRRVIRRRRNRMAAIRRLLHAAGLLPSTDSDALKRPGHD
PWELRARGLDKPLKPVEFAVVLGHIAKRRGFKSAAKRKATNISSDDKKMLTALEATRE
RLGRYRTVGEMFARDPDFASRRRNREGKYDRTTARDDLEHEVHALFAAQRRLGQGFAS
PELEEAFTASAFHQRPMQDSERLVGFCPFERTEKRAAKLTPSFERFRLLARLLNLRIT
TPDGERPLTVDEIALVTRDLGKTAKLSIKRVRTLIGLEDNQRFTTIRPEDEDRDIVAR
TGGAMTGTATLRKALGEALWTDMQERPEQLDAIVQVLSFFEANETITEKLREIGLTLA
VLDVLLTALDAGVFAKFKGAAHISTKAARNLLPHLEQGRRYDEACTMAGYDHAASRLS
HHGQIVAKTQFNALVTEIGESIANPIARKALIEGLKQIWAMRNHWGLPGSIHVELARD
VGNSIEKRREIEKHIEKNTALRARERREVHDLLDLEDVNGDTLLRYRLWKEQGGKCLY
TGKAIHIRQIAATDNSVQVDHILPWSRFGDDSFNNKTLCLASANQQKKRSTPYEWLSG
QTGDAWNAFVQRIETNKELRGFKKRNYLLKNAKEAEEKFRSRNLNDTRYAARLFAEAV
KLLYAFGERQEKGGNRRVFTRPGALTAALRQAWGVESLKKQDGKRINDDRHHALDALT
VAAVDEAEIQRLTKSFHEWEQQGLGRPLRRVEPPWESFRADVEATYPEVFVARPERRR
ARGEGHAATIRQVKERECTPIVFERKAVSSLKEADLERIKDGERNEAIVEAIRSWIAT
GRPADAPPRSPRGDIITKIRLATTIKAAVPVRGGTAGRGEMVRADVFSKPNRRGKDEW
YLVPVYPHQIMNRKAWPKPPMRSIVANKDEDEWTEVGPEHQFRFSLYPRSNIEIIRPS
GEVIEGYFVGLHRNTGALIPTPVGPDSYVIA"
misc_feature 382743..385697
/locus_tag="Gdia_0342"
/note="Predicted CRISPR-associated nuclease, contains
McrA/HNH-nuclease and RuvC-like nuclease domain [Defense
mechanisms]; Region: COG3513"
/db_xref="CDD:33316"
misc_feature 382749..384998
/locus_tag="Gdia_0342"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cl00083"
/db_xref="CDD:213079"
mobile_element 385708..386883
/mobile_element_type="insertion sequence:Gdi4"
gene 385810..386867
/locus_tag="Gdia_0343"
/note="ribosomal slippage"
/db_xref="GeneID:6973737"
CDS join(385810..386298,386298..386867)
/locus_tag="Gdia_0343"
/ribosomal_slippage
/note="KEGG: gdi:GDI3803 putative transposase"
/codon_start=1
/transl_table=11
/product="transposase IS630"
/protein_id="YP_002274754.1"
/db_xref="GI:209542525"
/db_xref="GeneID:6973737"
/translation="MGGALALREDYDAAGLRALARTTRHAGQARRLLALAAIYDGASR
GDAARLAGTDRQIVRDWVVRFNAEGPDGVRDHHGGGVVPRLTPAMLEALMRRIEDGPI
AAVHGVVRWRQADLGQWLYEEFGVSLSRSRLSAVIRGLDFRLLTGRPRHHAQDPEAQD
VFKKSFPDVMAGIRARHPGKAIELWWGDEARVGQKTKLTRRWARRGTRPRAPADQRTR
SAWIFGAICPALGKGAALVLPWCNLHAMNRHLDEISQAVAPGAHAILIVDQAAWHTSP
KLDIPANITILPLPPRSPELNPVENVWQFMRNTWLSNRIFRTYDDIVDICCHAWNQLV
DQPWRIMSLGLRQWAHGF"
misc_feature 385921..386223
/locus_tag="Gdia_0343"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:205729"
misc_feature join(386137..386298,386298..386300)
/locus_tag="Gdia_0343"
/note="Winged helix-turn helix; Region: HTH_33; pfam13592"
/db_xref="CDD:205770"
misc_feature 386355..386774
/locus_tag="Gdia_0343"
/note="DDE superfamily endonuclease; Region: DDE_3;
pfam13358"
/db_xref="CDD:205537"
misc_feature 386538..386834
/locus_tag="Gdia_0343"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3335"
/db_xref="CDD:33144"
gene 387014..387907
/locus_tag="Gdia_0344"
/db_xref="GeneID:6973738"
CDS 387014..387907
/locus_tag="Gdia_0344"
/note="TIGRFAM: CRISPR-associated protein Cas1;
KEGG: gdi:GDI2124 hypothetical protein"
/codon_start=1
/transl_table=11
/product="CRISPR-associated protein Cas1"
/protein_id="YP_002274755.1"
/db_xref="GI:209542526"
/db_xref="InterPro:IPR002729"
/db_xref="GeneID:6973738"
/translation="MAWRGVHISHPSRLTHRNRQLVVAQDGGEVSLAVEDIACLILDT
RQVSITGSLLSALAENGVAMIVPDARHHPAGILLPFHQHHAQAHIAHAQISISQPLKK
RLWQTLVVAKIRNQAALLDQLGRPQGQTIAAMAGRVASGDPGNVEAQAARAYWASLFS
DFTRANENDRRNALLNYGYAIMRAAIARACVALGLLPAFGVHHASKTNAFNLVDDLIE
PFRPFVDRMAHDRALEHVGDTLSIEDRRQMSTILNDNAAIGRERMTVLAATEAVAMSV
VRAIEHGSAALLSTPTLKARD"
misc_feature 387020..387844
/locus_tag="Gdia_0344"
/note="CRISPR/Cas system-associated protein Cas1; Region:
Cas1_I-II-III; cl00656"
/db_xref="CDD:207153"
gene 387917..388246
/locus_tag="Gdia_0345"
/db_xref="GeneID:6973739"
CDS 387917..388246
/locus_tag="Gdia_0345"
/note="TIGRFAM: CRISPR-associated protein Cas2;
KEGG: gdi:GDI2125 hypothetical protein"
/codon_start=1
/transl_table=11
/product="CRISPR-associated protein Cas2"
/protein_id="YP_002274756.1"
/db_xref="GI:209542527"
/db_xref="InterPro:IPR003799"
/db_xref="GeneID:6973739"
/translation="MKAEDIRFMWLLVFFDLPVRTKEQRRRASRFRHFLKDDGFLMLQ
FSVYARICRGQDAVEKHVRRVRSNLPKEGSVRTLQITDRQYGRMELMLGLAPKTERIG
PSQMVLL"
misc_feature 387941..388195
/locus_tag="Gdia_0345"
/note="CRISPR/Cas system-associated protein Cas2; Region:
Cas2_I_II_III; cd09638"
/db_xref="CDD:187769"
repeat_region 388303..388602
/note="CRISPR Recognition Tool, Bland et al. 2007"
/rpt_unit_range=388303..388338
gene 388735..389274
/locus_tag="Gdia_0346"
/db_xref="GeneID:6973740"
CDS 388735..389274
/locus_tag="Gdia_0346"
/EC_number="3.5.1.88"
/note="KEGG: gdi:GDI2127 peptide deformylase;
TIGRFAM: peptide deformylase;
PFAM: formylmethionine deformylase"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="YP_002274757.1"
/db_xref="GI:209542528"
/db_xref="InterPro:IPR000181"
/db_xref="GeneID:6973740"
/translation="MIDRDAIAAAIPMPILVAPQAILRQKARPVRPEDAAGVRDALPR
MFAAMYQAPGIGLAAPQVGMGLRFAIVDLGEEGERQPLILINPDVIAESDSLASREEG
CLSLPNQYAEVIRPDRVRVRYRTLDGTEEELEADGLLATCIQHEIDHLEGILFVDHLS
TLKRNMIMRRLAKEQRQKR"
misc_feature 388777..389199
/locus_tag="Gdia_0346"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:29602"
misc_feature order(388894..388902,388915..388917,389038..389046,
389167..389172,389179..389181)
/locus_tag="Gdia_0346"
/note="active site"
/db_xref="CDD:29602"
misc_feature order(388900..388902,388915..388917,389044..389046,
389170..389172)
/locus_tag="Gdia_0346"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
misc_feature order(389041..389043,389167..389169,389179..389181)
/locus_tag="Gdia_0346"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
gene 389320..390237
/locus_tag="Gdia_0347"
/db_xref="GeneID:6973741"
CDS 389320..390237
/locus_tag="Gdia_0347"
/note="TIGRFAM: methionyl-tRNA formyltransferase;
PFAM: formyl transferase domain protein;
KEGG: gdi:GDI2128 methionyl-tRNA formyltransferase"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_002274758.1"
/db_xref="GI:209542529"
/db_xref="InterPro:IPR001555"
/db_xref="InterPro:IPR002376"
/db_xref="InterPro:IPR005793"
/db_xref="InterPro:IPR005794"
/db_xref="GeneID:6973741"
/translation="MRLAFMGTPDFAVPALHALHEAGHEIAVVYSQPPRPAGRGQAVR
PQPVHLAAEALGIPVRVPTRLRANHDEHAFFRALDLDAAVVAAYGLILPGAMLDAPRR
GCLNVHASLLPRWRGAAPIQAAILAGDDESGVTIMQMDEGLDTGAMLLTGRVALTPAT
TASTLHDDLAAMGGRLIVAALANSETAAIPQPAEGATYAARLTREDGRIDWTRDAVDI
DRQVRALTPWPGTFTTLDGTVLKIGAATPIDGPRDAVPGTVLDDRLTVACGQGTLRLT
RIQRPGRGMMEADAFLRGQPVPVGTRLGS"
misc_feature 389320..390231
/locus_tag="Gdia_0347"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:178787"
misc_feature 389320..389925
/locus_tag="Gdia_0347"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature order(389338..389340,389350..389355,389572..389595,
389608..389610,389635..389646,389668..389670,
389728..389730,389734..389739,389746..389751)
/locus_tag="Gdia_0347"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature order(389341..389346,389350..389352,389413..389415,
389425..389427,389431..389442,389575..389586,
389635..389637,389641..389646,389668..389676,
389920..389922)
/locus_tag="Gdia_0347"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature order(389572..389574,389581..389583,389587..389595,
389608..389610,389635..389637,389734..389739,
389746..389751)
/locus_tag="Gdia_0347"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature order(389635..389637,389641..389643,389749..389751)
/locus_tag="Gdia_0347"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature 389932..390183
/locus_tag="Gdia_0347"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature order(390001..390003,390034..390036,390040..390042,
390154..390156,390160..390162,390166..390171,
390175..390177)
/locus_tag="Gdia_0347"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene 390234..391010
/gene="truA"
/locus_tag="Gdia_0348"
/db_xref="GeneID:6973742"
CDS 390234..391010
/gene="truA"
/locus_tag="Gdia_0348"
/EC_number="5.4.99.12"
/note="mediates pseudouridylation (positions 38, 39, 40)
at the tRNA anticodon region which contributes to the
structural stability"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase A"
/protein_id="YP_002274759.1"
/db_xref="GI:209542530"
/db_xref="InterPro:IPR001406"
/db_xref="GeneID:6973742"
/translation="MTAPSLQRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLA
SGRVVPSITAGRTDAGVHATGQAAHLDFPGDVRLNDSTVRDALNFHMKPYPVAVLRAC
PVDTEWSARFSAIRRSYRYRILNRRSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRH
DFTSFRASACQARSPLRTLDRLGVVRQGEEIVIEAEARSFLHHQVRNMVGTLKLVGEG
LWAPDRVAAALAACDRRAAGPTAPPDGLYLTGVGYDPDPF"
misc_feature 390252..390992
/gene="truA"
/locus_tag="Gdia_0348"
/note="tRNA pseudouridine synthase A; Validated; Region:
truA; PRK00021"
/db_xref="CDD:178798"
misc_feature 390264..390992
/gene="truA"
/locus_tag="Gdia_0348"
/note="Eukaryotic and bacterial pseudouridine synthases
similar to E. coli TruA; Region: PseudoU_synth_EcTruA;
cd02570"
/db_xref="CDD:211337"
misc_feature order(390273..390275,390495..390497,390504..390506,
390510..390530)
/gene="truA"
/locus_tag="Gdia_0348"
/note="dimerization interface 3.5A [polypeptide binding];
other site"
/db_xref="CDD:211337"
misc_feature order(390396..390407,390849..390851)
/gene="truA"
/locus_tag="Gdia_0348"
/note="active site"
/db_xref="CDD:211337"
gene complement(391017..391655)
/locus_tag="Gdia_0349"
/db_xref="GeneID:6973743"
CDS complement(391017..391655)
/locus_tag="Gdia_0349"
/note="KEGG: gdi:GDI2130 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274760.1"
/db_xref="GI:209542531"
/db_xref="GeneID:6973743"
/translation="MMQGRGVPQGPLPNSAGGIFRGMMLLGRGRREGLNCFGATQDSV
LTALAPRVALWLVGALLTLVQAPTGLSGTKILFSLCLVLTPIIVTHQLARLWGREALW
PRYMTAALWCDWLVLFVMLIAVAVVAMVLPAGLNAVHSALILNGIVFAYNLWLTWFIA
RVGLALGVWRAILVVLAVAAAILVLGEAAAVLPPHYAPWQDFLALPSAHAPQ"
gene complement(391652..392809)
/locus_tag="Gdia_0350"
/db_xref="GeneID:6973744"
CDS complement(391652..392809)
/locus_tag="Gdia_0350"
/note="dapE-encoded N-succinyl-L,L-diaminopimelic acid
desuccinylase (DapE), catalyzes the hydrolysis of
N-succinyl-L,Ldiaminopimelate L,L-SDAP to
L,L-diaminopimelate and succinate. It is a metalloprotease
containing dinuclear active sites. Its structure is
similar to the carboxypeptidase G2 from Pseudomonas sp.
strain RS-16 and the aminopeptidase from Aeromonas
proteolytica."
/codon_start=1
/transl_table=11
/product="succinyl-diaminopimelate desuccinylase"
/protein_id="YP_002274761.1"
/db_xref="GI:209542532"
/db_xref="InterPro:IPR000238"
/db_xref="InterPro:IPR001261"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR005941"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:6973744"
/translation="MTGALTPASTPALTLARDLIRAPSVTPDDGGAIGVLTAALRGLG
FDVTDLPFGEGPARTPNLFARLGRSGPHLCFAGHTDVVPPGDGGWTSGPFEAALRDGR
LYGRGACDMKGGIAAFVGAVARILESGRTLRGSVSLLITGDEEGPATFGTVKVLEWMA
AHGQVPDFCVVGEPTNPDHLGDVIKIGRRGSLNARIVVPGIQGHVAYPHRADNPVHRL
LAILSDLTARPLDQGTEWFEPSSLQVTTVDVGNEATNVIPGRATARLNIRFNDLHTGQ
GLADWIRGVAHVHAPGAEVTVQISGEAFRTEPTPELDMLAASIQAVTGRAPRLDTGGG
TSDARFISRYCPVAEFGLVGASMHKVDEHVPVADLLALTDIYAAFLERLMG"
misc_feature complement(391661..392785)
/locus_tag="Gdia_0350"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK13009"
/db_xref="CDD:183838"
misc_feature complement(391670..392773)
/locus_tag="Gdia_0350"
/note="M20 Peptidase proteobacterial DapE encoded
N-succinyl-L,L-diaminopimelic acid desuccinylase; Region:
M20_DapE_proteobac; cd03891"
/db_xref="CDD:193511"
misc_feature complement(order(391736..391738,392291..392293,
392375..392380,392480..392482,392576..392578))
/locus_tag="Gdia_0350"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193511"
misc_feature complement(order(391811..391813,392006..392008,
392012..392014,392036..392041,392060..392083,
392087..392089,392132..392134,392141..392146,
392150..392155,392162..392167,392171..392173,
392189..392200,392231..392233))
/locus_tag="Gdia_0350"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193511"
gene complement(392806..393651)
/gene="dapD"
/locus_tag="Gdia_0351"
/db_xref="GeneID:6973745"
CDS complement(392806..393651)
/gene="dapD"
/locus_tag="Gdia_0351"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_002274762.1"
/db_xref="GI:209542533"
/db_xref="InterPro:IPR001451"
/db_xref="InterPro:IPR005664"
/db_xref="GeneID:6973745"
/translation="MNDEHALRTHIEAAWERRDTLSSATKGADREAVEHALAGLDSGA
LRVATPTDAGWVVNEWLKKAVLLSFRLNDSHVMPAAPAPFFDKVPLKFQGWDEAQFGQ
AAFRAVPGAIVRRSAYIAPGVVLMPSFVNAGARVESGTMVDTWVTIGSCAQIGRNCHI
SGGVGIGGVLEPLQAAPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLSASTKIVD
RTTGEVFVGRVPAYSVVVPGTLPPRTPHAADGTPLPALACAVIVKRVDERTRSKTSIN
ELLRD"
misc_feature complement(392812..393639)
/gene="dapD"
/locus_tag="Gdia_0351"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature complement(392929..393339)
/gene="dapD"
/locus_tag="Gdia_0351"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature complement(order(392929..392931,392935..392946,
393025..393027,393079..393081,393085..393087,
393163..393165,393211..393219,393265..393267,
393271..393273,393319..393324,393331..393336))
/gene="dapD"
/locus_tag="Gdia_0351"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature complement(order(393034..393039,393070..393072,
393085..393093,393130..393132,393139..393144,
393148..393150,393169..393171,393175..393177,
393202..393204,393223..393225,393259..393261,
393274..393276,393310..393312,393334..393336))
/gene="dapD"
/locus_tag="Gdia_0351"
/note="active site"
/db_xref="CDD:100041"
misc_feature complement(order(393142..393144,393202..393204,
393223..393225,393259..393261,393274..393276,
393310..393312,393334..393336))
/gene="dapD"
/locus_tag="Gdia_0351"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature complement(order(393034..393039,393070..393072,
393085..393093,393130..393132,393148..393150,
393166..393171))
/gene="dapD"
/locus_tag="Gdia_0351"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene complement(393778..394719)
/locus_tag="Gdia_0352"
/db_xref="GeneID:6973746"
CDS complement(393778..394719)
/locus_tag="Gdia_0352"
/note="catalyzes the phosphorylation of
N-acetyl-L-glutamate to form N-acetyl-L-glutamate
5-phosphate"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_002274763.1"
/db_xref="GI:209542534"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001057"
/db_xref="InterPro:IPR004662"
/db_xref="GeneID:6973746"
/translation="MSESQSEFPGGGTTGDIVRTMQEAQERAAVLAQALPFLRRYAGD
TIVVKYGGHAMVDDSLSNAFGHDIALLKLVGVNPVIVHGGGPQISAMLTRLQIPSTFV
DGLRVTDAAMVDVIEMVLAGKVNKQVAGLINQAGALAVGISGKDGGLITARRLQRTTR
DASGQERALDLGFVGEPTHIDPRVLYALSGSGLIPVVAPVGIGEAGETYNINADTAAG
AIAGAVHATRLLMLTDVPGVLDETGALIPELTAEEARRGIASGMISGGMIPKVETCLE
AVRSGARAAVILDGRVPHACLLELFTEAGPGTLIRGE"
misc_feature complement(393790..394632)
/locus_tag="Gdia_0352"
/note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic
(NAGK-C) catalyzes the phosphorylation of the gamma-COOH
group of N-acetyl-L-glutamate (NAG) by ATP in the second
step of arginine biosynthesis found in some bacteria and
photosynthetic organisms using the...; Region: AAK_NAGK-C;
cd04250"
/db_xref="CDD:58616"
misc_feature complement(394603..394632)
/locus_tag="Gdia_0352"
/note="feedback inhibition sensing region; other site"
/db_xref="CDD:58616"
misc_feature complement(order(393814..393816,393826..393831,
393838..393840,394141..394143,394168..394170,
394276..394287,394291..394293,394297..394305,
394309..394311,394330..394332,394342..394344,
394351..394353,394366..394371,394378..394380,
394435..394440,394498..394500,394510..394512,
394522..394524,394603..394608,394615..394617,
394621..394629))
/locus_tag="Gdia_0352"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58616"
misc_feature complement(order(393910..393912,393919..393924,
393928..393930,393934..393936,394003..394005,
394015..394023,394084..394086,394561..394566,
394573..394575))
/locus_tag="Gdia_0352"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58616"
misc_feature complement(order(394081..394086,394090..394092,
394402..394407,394468..394473))
/locus_tag="Gdia_0352"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58616"
gene complement(394760..395431)
/gene="engB"
/locus_tag="Gdia_0353"
/db_xref="GeneID:6973747"
CDS complement(394760..395431)
/gene="engB"
/locus_tag="Gdia_0353"
/note="binds guanine nucleotides; in Escherichia coli
depletion results in defective cell division and
filamentation; in Bacillus subtilis this gene is
essential"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTP-binding protein YsxC"
/protein_id="YP_002274764.1"
/db_xref="GI:209542535"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR005289"
/db_xref="GeneID:6973747"
/translation="MSDFNATPRTPDEEERLLEAGRLLFAGPCDFFFGAQKLEQLPPP
GAPEIAFAGRSNVGKSSLINALTGRRALARASSEPGRTKQLNFFDLGGRLTLVDMPGY
GYARAAKDVKEDWQGMMFAYLRGRPTLQRVILLLDSRIELKASDREIMTLLDRAAVTF
QIVLTKCDAPRPGALEAKRSQAADLARQHPAAYPGTFATSSDTGLGIPELRAELAALA
LPQAG"
misc_feature complement(394811..395341)
/gene="engB"
/locus_tag="Gdia_0353"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature complement(394811..395290)
/gene="engB"
/locus_tag="Gdia_0353"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature complement(395252..395275)
/gene="engB"
/locus_tag="Gdia_0353"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(394829..394834,394928..394930,
394934..394936,395138..395140,395186..395194,
395201..395209,395249..395269))
/gene="engB"
/locus_tag="Gdia_0353"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature complement(395177..395197)
/gene="engB"
/locus_tag="Gdia_0353"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature complement(395186..395188)
/gene="engB"
/locus_tag="Gdia_0353"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature complement(395129..395140)
/gene="engB"
/locus_tag="Gdia_0353"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(395045..395050,395057..395101,
395120..395131))
/gene="engB"
/locus_tag="Gdia_0353"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature complement(394928..394939)
/gene="engB"
/locus_tag="Gdia_0353"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature complement(394826..394834)
/gene="engB"
/locus_tag="Gdia_0353"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene complement(395445..397214)
/locus_tag="Gdia_0354"
/db_xref="GeneID:6973748"
CDS complement(395445..397214)
/locus_tag="Gdia_0354"
/note="PFAM: 60 kDa inner membrane insertion protein;
KEGG: gdi:GDI2135 putative inner membrane protein OxaA"
/codon_start=1
/transl_table=11
/product="60 kDa inner membrane insertion protein"
/protein_id="YP_002274765.1"
/db_xref="GI:209542536"
/db_xref="InterPro:IPR001708"
/db_xref="InterPro:IPR013308"
/db_xref="GeneID:6973748"
/translation="MDTKRFIVATLLSAMVLVGFEYFMPKQAHHEVAQQAAQTSRQTP
PTDAARAPAPVAGASSQPVSTPAPQAETRLAIDAPKVAGSIDLLGARLDDMVLRDYHE
TVAKGSPQVRILEPGHDQQPNYVEIGWMNLPGGQVRVPDATTVWSADAPKLTSDRPVT
LSWDNGAGVTFQIVVSIDAHYMFGIEQRIVNRSAQPVSLYPYARVDRAYTPTETGGYL
VHEGPISVIDGRLDESSYKSLRTGATPPGNLSWTKGGQGGWAGITDKYWLTAVIPQQG
TAVTGSYGYQANGGAGVYQVGFIAQAATVVAPGTTGATVSHVFAGAKEVNLLEQYQSS
LHIPDFWKAVDFGWFAFLTRPIFYVLDWLNTLLGNFGLALMAFTLLVKALFFPLATRQ
FRSMAKMRQLQPKVQELRERYKSDQMALNQNMMALYKAEGVNPAAGCLPMVVQIPVFW
SLYKDLYITIEMRHAPFFGWIHDLSAPDLTNLFNLFGLIPWDPNVLSPYLQLGVWPIL
FGATMFLQQKLNPAPTDPAQQRMFQMMPVLFTFFMARQPAGLVIYYCWNNLLTVAQQM
VIQRRMKSAVDKVGAIPAAAGRK"
misc_feature complement(395463..397214)
/locus_tag="Gdia_0354"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:179279"
misc_feature complement(395505..396110)
/locus_tag="Gdia_0354"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:211846"
gene complement(397236..397475)
/locus_tag="Gdia_0355"
/db_xref="GeneID:6973749"
CDS complement(397236..397475)
/locus_tag="Gdia_0355"
/note="PFAM: protein of unknown function DUF37;
KEGG: pap:PSPA7_3242 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274766.1"
/db_xref="GI:209542537"
/db_xref="InterPro:IPR002696"
/db_xref="GeneID:6973749"
/translation="MIGAIRVYQWVLSPVLGPNCRFVPSCSNYAVEAVRRHGPFRGAI
LAAWRILRCNPWNIGGYDPVPSRERARRSCCSSHR"
misc_feature complement(397284..397475)
/locus_tag="Gdia_0355"
/note="Haemolytic domain; Region: Haemolytic; pfam01809"
/db_xref="CDD:201984"
gene complement(397496..397846)
/locus_tag="Gdia_0356"
/db_xref="GeneID:6973750"
CDS complement(397496..397846)
/locus_tag="Gdia_0356"
/note="TIGRFAM: ribonuclease P protein component;
PFAM: ribonuclease P protein;
KEGG: gdi:GDI2137 ribonuclease P protein component"
/codon_start=1
/transl_table=11
/product="ribonuclease P protein component"
/protein_id="YP_002274767.1"
/db_xref="GI:209542538"
/db_xref="InterPro:IPR000100"
/db_xref="GeneID:6973750"
/translation="MADRAHRLKKRAEFLKVASRGRKVPSPGLVLQALGRDDSDPARI
GFTVTKKVGNAVVRNRTRRRLREAVRVVEREEPLNGVDLVLIGRDGTRGRTFAALVGD
LRRTLRKAGVRGAE"
misc_feature complement(397514..397837)
/locus_tag="Gdia_0356"
/note="Ribonuclease P; Region: Ribonuclease_P; pfam00825"
/db_xref="CDD:201459"
gene complement(397911..398045)
/gene="rpmH"
/locus_tag="Gdia_0357"
/db_xref="GeneID:6973751"
CDS complement(397911..398045)
/gene="rpmH"
/locus_tag="Gdia_0357"
/note="in Escherichia coli transcription of this gene is
enhanced by polyamines"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L34"
/protein_id="YP_002274768.1"
/db_xref="GI:209542539"
/db_xref="InterPro:IPR000271"
/db_xref="GeneID:6973751"
/translation="MKRTYQPSKLVRKRRHGFRARMETVGGRKVIANRRAKGRKRLSA
"
misc_feature complement(397914..398045)
/gene="rpmH"
/locus_tag="Gdia_0357"
/note="50S ribosomal protein L34; Reviewed; Region: rpmH;
PRK00399"
/db_xref="CDD:179004"
gene 398134..398340
/locus_tag="Gdia_0358"
/db_xref="GeneID:6973752"
CDS 398134..398340
/locus_tag="Gdia_0358"
/note="KEGG: gdi:GDI2138 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274769.1"
/db_xref="GI:209542540"
/db_xref="GeneID:6973752"
/translation="MTGPESDEKTRRVAATLHDVRGLLSPAMLSADGLTLHADPQVRA
AAEQIIQSIEQAVSRLKALGQPKK"
gene complement(398349..398738)
/locus_tag="Gdia_0359"
/db_xref="GeneID:6973753"
CDS complement(398349..398738)
/locus_tag="Gdia_0359"
/EC_number="4.4.1.5"
/note="KEGG: gdi:GDI2139 putative lactoylglutathione
lyase;
TIGRFAM: lactoylglutathione lyase;
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase"
/codon_start=1
/transl_table=11
/product="lactoylglutathione lyase"
/protein_id="YP_002274770.1"
/db_xref="GI:209542541"
/db_xref="InterPro:IPR004360"
/db_xref="InterPro:IPR004361"
/db_xref="GeneID:6973753"
/translation="MGSYLHTMVRVRNLDASIAFYKLLGMHELRRREVPEGKYTLVFI
GYADNAAGQAEIELTYNWGQDDGYEVGTGFGHFAVGVPDVAAVAEAVRAGGGKVTREA
GPVKFGTTIIAFVEDPDGYKIELIQRP"
misc_feature complement(398361..398729)
/locus_tag="Gdia_0359"
/note="Glyoxalase I catalyzes the isomerization of the
hemithioacetal, formed by a 2-oxoaldehyde and glutathione,
to S-D-lactoylglutathione; Region: Glyoxalase_I; cd07233"
/db_xref="CDD:176659"
misc_feature complement(order(398367..398369,398376..398378,
398469..398471,398493..398522,398553..398558,
398568..398573,398577..398579,398601..398603,
398613..398615,398643..398648,398655..398657,
398664..398666,398673..398675,398682..398687,
398694..398699,398709..398711,398715..398729))
/locus_tag="Gdia_0359"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176659"
misc_feature complement(398364..398723)
/locus_tag="Gdia_0359"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature complement(order(398367..398369,398373..398375,
398397..398399,398403..398405,398439..398441,
398511..398513,398556..398558,398562..398564,
398568..398570,398616..398618,398622..398624,
398637..398639,398709..398711,398721..398723))
/locus_tag="Gdia_0359"
/note="active site"
/db_xref="CDD:176659"
misc_feature complement(order(398367..398369,398511..398513,
398568..398570,398721..398723))
/locus_tag="Gdia_0359"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:176659"
misc_feature complement(order(398373..398375,398397..398399,
398403..398405,398439..398441,398556..398558,
398562..398564,398616..398618,398622..398624,
398637..398639,398709..398711))
/locus_tag="Gdia_0359"
/note="glutathione binding site [chemical binding]; other
site"
/db_xref="CDD:176659"
gene complement(398748..399596)
/locus_tag="Gdia_0360"
/db_xref="GeneID:6973754"
CDS complement(398748..399596)
/locus_tag="Gdia_0360"
/note="PFAM: protein of unknown function DUF1009;
KEGG: gdi:GDI2140 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274771.1"
/db_xref="GI:209542542"
/db_xref="InterPro:IPR010415"
/db_xref="GeneID:6973754"
/translation="MSGRKNGPALSGECVGILAGGGPLPGQVARAAVAMGLRVFIVGF
QDFAEPAIIEPWPHRYIRLAAAGEILSCLRAEQCRDLVLIGPVRRPSFSDLRPDATGA
RIMARIGRALFSGDDGLLAAIVRVLAEEGFTIHGAHEFLSGSVGRRGVLGRVQPDAQA
QADIGRGRAVVDAIGRLDIGQGCVVQDGLVLAVEAMEGTDRMLLRAGECRQPGRPGGV
LVKMLKPGQDRRADLPTIGPDTVRRAAQAGLRGIAFQAGATLLTDPDGCVAAANEAGL
FLAGIE"
misc_feature complement(398757..399398)
/locus_tag="Gdia_0360"
/note="Protein of unknown function (DUF1009); Region:
DUF1009; pfam06230"
/db_xref="CDD:148062"
gene complement(399597..400472)
/locus_tag="Gdia_0361"
/db_xref="GeneID:6973755"
CDS complement(399597..400472)
/locus_tag="Gdia_0361"
/EC_number="2.3.1.129"
/note="catalyzes the addition of
(R)-3-hydroxytetradecanoyl to the glucosamine disaccharide
in lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine acyltransferase"
/protein_id="YP_002274772.1"
/db_xref="GI:209542543"
/db_xref="InterPro:IPR001451"
/db_xref="InterPro:IPR010137"
/db_xref="GeneID:6973755"
/translation="MLTDLAGLDAETRAAEIHPSSIVASGARIGHGVRIGPWCSIGPD
VTIEDGVHLIANVIIDGHTHIGPGVVCFPFTTIGMAPQDLKYRGEPTRCTIGARTVIR
ENVTIHRGTATGSGVTRVGDDCLIMANSHVAHDCTLGNGVIIVNNVVMGGHVTIGDHA
RIMGAAALHQFVRIGRAALVGGVCGVEADVIPYGSVLGNRARLVGLHWIWLKRNGVQP
DELHLLRRAFRALYPRAMDEESTAFSRRLASVRADYGSDPKVAEILAFIEAPSHRGLV
RVAGGGAASIESDGV"
misc_feature complement(399642..400433)
/locus_tag="Gdia_0361"
/note="UDP-N-acetylglucosamine acyltransferase;
Provisional; Region: PRK05289"
/db_xref="CDD:179994"
misc_feature complement(399648..400424)
/locus_tag="Gdia_0361"
/note="UDP-N-acetylglucosamine O-acyltransferase
(UDP-GlcNAc acyltransferase): Proteins in this family
catalyze the transfer of (R)-3-hydroxymyristic acid from
its acyl carrier protein thioester to UDP-GlcNAc. It is
the first enzyme in the lipid A biosynthetic...; Region:
LbH_UDP-GlcNAc_AT; cd03351"
/db_xref="CDD:100042"
misc_feature complement(order(399831..399836,399852..399854,
399927..399929,399963..399968,400014..400016,
400071..400073,400080..400082,400149..400151,
400218..400220,400227..400229))
/locus_tag="Gdia_0361"
/note="active site"
/db_xref="CDD:100042"
gene complement(400514..400999)
/gene="fabZ"
/locus_tag="Gdia_0362"
/db_xref="GeneID:6973756"
CDS complement(400514..400999)
/gene="fabZ"
/locus_tag="Gdia_0362"
/note="in Pseudomonas aeruginosa this enzyme is a trimer
of dimers; essential for membrane formation; performs
third step of type II fatty acid biosynthesis; catalyzes
dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_002274773.1"
/db_xref="GI:209542544"
/db_xref="InterPro:IPR010084"
/db_xref="InterPro:IPR013114"
/db_xref="GeneID:6973756"
/translation="MDKEVEVPPAGDSPTCIEAIDVMRIMEAIPHRYPFLLIDRMVDI
VLGSSAVGIKNVTASEPHFQGHFPARPVMPGVLIIEAMAQTAATLVVLTLGPAFEGKL
VYFMTIDGAKFRRPVGPGDQLRIHVEKERSRANVWKFKGIARVDGVSVAEATFSAMIM
G"
misc_feature complement(400520..400915)
/gene="fabZ"
/locus_tag="Gdia_0362"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene complement(401104..402174)
/gene="lpxD"
/locus_tag="Gdia_0363"
/db_xref="GeneID:6973757"
CDS complement(401104..402174)
/gene="lpxD"
/locus_tag="Gdia_0363"
/note="adds the O-linked and N-linked 3(R)-hydroxy fatty
acids to the glucosamine disaccharide during lipid A
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="YP_002274774.1"
/db_xref="GI:209542545"
/db_xref="InterPro:IPR001451"
/db_xref="InterPro:IPR007691"
/db_xref="GeneID:6973757"
/translation="MERQDAALPGDRRFFERNGPFSLRALAECAGARVEGGDEADDAP
RYVGIAPLQSAGPQEVSFLDNRRYAPLLEQTRAGVVILAPAFVDRLPKGTVGLVCSTP
YLAWARVAGLFHPVPAAIPGIHPTAIVGAGADIDPSAQIGPFVTIGAGAQVGAGSRID
AYALIGDGVRIGAHCRIGSHASVSHALLGDRVTLLSGARIGQEGFGFAVGPDGFETVP
QLGRVVLEDGVEVGANSTIDRGSSQDTVIGAGSRLDNLVQIGHNARLGRCCIVVSQAG
ISGSTELGDFVTIAAQAGLIGHIRVGTKARIGAQCGVMSDVEAGADVIGSPAMPFREF
FRNVAVLRRLAKKATQNGGGET"
misc_feature complement(401110..402120)
/gene="lpxD"
/locus_tag="Gdia_0363"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional; Region: lpxD; PRK00892"
/db_xref="CDD:179158"
misc_feature complement(401836..402033)
/gene="lpxD"
/locus_tag="Gdia_0363"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:203056"
misc_feature complement(401170..401778)
/gene="lpxD"
/locus_tag="Gdia_0363"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature complement(order(401176..401178,401188..401190,
401239..401247,401281..401283,401293..401301,
401317..401319,401347..401355,401365..401367,
401371..401373,401389..401391,401401..401403,
401407..401415,401419..401421,401446..401454,
401461..401463,401467..401469,401473..401475,
401485..401487,401521..401529,401560..401562,
401566..401568,401584..401586,401590..401592,
401629..401631,401635..401637,401674..401676,
401728..401733,401743..401745))
/gene="lpxD"
/locus_tag="Gdia_0363"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature complement(order(401248..401250,401281..401286,
401335..401343,401356..401361,401389..401394,
401401..401403,401413..401415,401554..401562))
/gene="lpxD"
/locus_tag="Gdia_0363"
/note="active site"
/db_xref="CDD:100043"
misc_feature complement(order(401281..401286,401335..401340,
401389..401394,401554..401562))
/gene="lpxD"
/locus_tag="Gdia_0363"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature complement(order(401248..401250,401341..401343,
401356..401361,401401..401403,401413..401415))
/gene="lpxD"
/locus_tag="Gdia_0363"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene complement(402189..403073)
/locus_tag="Gdia_0364"
/db_xref="GeneID:6973758"
CDS complement(402189..403073)
/locus_tag="Gdia_0364"
/note="PFAM: outer membrane chaperone Skp (OmpH);
KEGG: gdi:GDI2144 outer membrane protein"
/codon_start=1
/transl_table=11
/product="outer membrane chaperone Skp"
/protein_id="YP_002274775.1"
/db_xref="GI:209542546"
/db_xref="InterPro:IPR005632"
/db_xref="GeneID:6973758"
/translation="MLRSRGVSALVAAVVMSCAGLPSTAALAQGAAASGGNAGWFVPK
SAQPAAGTAAPRGPARTAPVPLPAAPADSDDAQSQTPPVLPMPPVPASPDIPRGVAPP
VPVIGVISVPDVMRLSSAAQQAERVLGARRDELARDAQKEQGGWRDEQQKLQAQAKNM
ASDQIQLRERRLQERVIAAQRDFRNRNRIIQEAAQVSLNQIERELVQILRQVAGSRGM
NLVLHREQVALSQDGLDITQQVADQLNKVLPTVFIPAANVDPEELAKSGTMPTTADAG
RQAAPAPTPAPVAATARH"
sig_peptide complement(402987..403073)
/locus_tag="Gdia_0364"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.941 at
residue 29"
misc_feature complement(402339..402734)
/locus_tag="Gdia_0364"
/note="Outer membrane protein (OmpH-like); Region: OmpH;
smart00935"
/db_xref="CDD:198003"
gene complement(403081..405495)
/locus_tag="Gdia_0365"
/db_xref="GeneID:6973759"
CDS complement(403081..405495)
/locus_tag="Gdia_0365"
/note="TIGRFAM: outer membrane protein assembly complex,
YaeT protein;
PFAM: surface antigen (D15); surface antigen variable
number repeat protein;
KEGG: gdi:GDI2145 outer membrane protein assembly factor
YaeT precursor"
/codon_start=1
/transl_table=11
/product="outer membrane protein assembly complex, YaeT
protein"
/protein_id="YP_002274776.1"
/db_xref="GI:209542547"
/db_xref="InterPro:IPR000184"
/db_xref="InterPro:IPR010827"
/db_xref="InterPro:IPR016474"
/db_xref="GeneID:6973759"
/translation="MPTKRSTLLASVCLIPLFFAGAAEARQGVATRGPVAHTPTGGVI
ESIDISGNDRIETNTVLSYMVVQPGDPFNQDQLDRSLKTLYATGLFRDVTLHRAGNVL
QVHLVENPIVNRIVFEGNHAAKDEDLRKVIALRPRAVFSTQTTAADRQKILGVYAEKA
RYAATVTPQIIRLSHNRVDVVFQINEATQTLIKKISFVGNRAFSEARLAQVVSSKETA
WYRFFASSDEYNPERLRYDGELLRRFYLRNGFVDFQVKNATGELSPDRKSFYVTFTVD
EGLRYRLGRVNIRSSLKHVPAASLRKYIELFANQWYDGSAVQHNATDMEEILQGQGHP
FAMVRPEIARNPEKRTVDLLFDVSEGPRVYVERIDINGNTITEDKVIRRNLPMAEGDP
YTPSERKYAKAMLQDLGYFSSVSIDQSPGSAPDKINVAANLVEKPTGEFSLGGGYSTD
VGILGNIGLKQHNLLGSGVDAGISGTMAYYQRQADISVSDPYFLNRNMVAGVDIFAIQ
NNYQTYQNYSEGRYGISFRMGYSYNNHLSQSFSYSLTDRDIDNAYSDASWYVLKQTGW
SLLSQLSTTLTYDTRDNRMNPHSGYVVRLAGDFAGIGGNERYLRGKLDAAYYIPLDDL
MGNHDWTVALTAGAGDIVNWGGGRSDIIDNFYLGGSTLRGFMDGGAGPRTMGIPAYTW
QGVTYPMHSQEDFLGGRFMYTGSATVNFPMPLAADMGIKGRYFVDMGGLDGLRIPRRY
TAYPQDMPYYTPVYSDTIKPRVSTGVGFSWKSPFGLINIDLGIPVLKEKHDRTRLFRF
GFGQQF"
sig_peptide complement(405418..405495)
/locus_tag="Gdia_0365"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.714 at
residue 26"
misc_feature complement(403084..405369)
/locus_tag="Gdia_0365"
/note="outer membrane protein assembly complex, YaeT
protein; Region: OM_YaeT; TIGR03303"
/db_xref="CDD:200260"
misc_feature complement(405169..405369)
/locus_tag="Gdia_0365"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(404938..405168)
/locus_tag="Gdia_0365"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(404662..404922)
/locus_tag="Gdia_0365"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(404416..404655)
/locus_tag="Gdia_0365"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(404188..404409)
/locus_tag="Gdia_0365"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(403084..404109)
/locus_tag="Gdia_0365"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:144626"
gene complement(405651..406754)
/locus_tag="Gdia_0366"
/db_xref="GeneID:6973760"
CDS complement(405651..406754)
/locus_tag="Gdia_0366"
/note="KEGG: gdi:GDI2146 putative metalloprotease MmpA;
TIGRFAM: membrane-associated zinc metalloprotease;
PFAM: peptidase M50;
SMART: PDZ/DHR/GLGF domain protein"
/codon_start=1
/transl_table=11
/product="membrane-associated zinc metalloprotease"
/protein_id="YP_002274777.1"
/db_xref="GI:209542548"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR004387"
/db_xref="InterPro:IPR006025"
/db_xref="InterPro:IPR008915"
/db_xref="GeneID:6973760"
/translation="MPDLLRTVLAFALVLGVLVFIHELGHYLAARWRGVHVEVFSIGF
GRPLLRWHDKVGTEWRICPLPLGGYVKPHGFEGPEEATPEQMAAWQPGRTFHDKPVLS
RAIVIVAGPVFNFLLAIVLFAGLFATVGRPEIRNVVGQVLPGSAAASAGVKPNDAIVR
IGDHVVADVADIQARISAEPGEKTVLTVRRAGQDVTLPVTVGSVTDSSGSHAGQLGVM
FTATVGKPMALPAAIVAAGQETWHLVVQTLAGLWQMLTGQHSAKDLGGPLRIAQMSGQ
VAQYGVASLVSFMALLSINLGLINLFPIPVLDGGRLVFYALEAVLGRPVSRRVRDISF
QAGFAVIAGLFLFSTFNDLSHFGLFRWVASLAG"
misc_feature complement(405693..406694)
/locus_tag="Gdia_0366"
/note="Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane];
Region: COG0750"
/db_xref="CDD:31093"
misc_feature complement(<406377..406694)
/locus_tag="Gdia_0366"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature complement(order(406677..406679,406686..406691))
/locus_tag="Gdia_0366"
/note="active site"
/db_xref="CDD:100084"
misc_feature complement(406164..406388)
/locus_tag="Gdia_0366"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature complement(order(406224..406229,406236..406241,
406368..406370,406374..406385))
/locus_tag="Gdia_0366"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29046"
misc_feature complement(405693..>405902)
/locus_tag="Gdia_0366"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature complement(405846..405857)
/locus_tag="Gdia_0366"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100084"
gene complement(406818..407975)
/locus_tag="Gdia_0367"
/db_xref="GeneID:6973761"
CDS complement(406818..407975)
/locus_tag="Gdia_0367"
/EC_number="1.1.1.267"
/note="catalyzes the NADP-dependent rearrangement and
reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to
2-C-methyl-D-erythritol 4-phosphate"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="YP_002274778.1"
/db_xref="GI:209542549"
/db_xref="InterPro:IPR003821"
/db_xref="InterPro:IPR013512"
/db_xref="InterPro:IPR013644"
/db_xref="GeneID:6973761"
/translation="MKSVTVLGSTGSIGCSTVDLLLQAPERFRVAALVGGSNAPRLAE
QARALRASHAVIADESRLPELRALLADDGIAVSGGRQAVIDAASQPVDWTMAAITGAI
GLEPTLAAVRNGGSVALANKEALVCAGDVMLRAVQQAGATLLPVDSEHNAIFQSMADR
QADQVEKIVLTASGGPFRRASLAEMEKATPEAALRHPTWTMGAKITIDSATMFNKGLE
VIEAARLFSLTEDRIGVVVHPQSVVHGLVQYTDGSIVAQMGSADMRIPIAHTLAWPCR
MATTSPRLDLAALGRMEFEEPDEVRFPALRLARESLRAGGAAPTILSAANEIAVEAFL
GCGIGFLDIARVVESVMQAIGHQPADTLEAVLHWDQEARRAARLRTASLAA"
misc_feature complement(406863..407975)
/locus_tag="Gdia_0367"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Provisional; Region: PRK05447"
/db_xref="CDD:180089"
misc_feature complement(407589..407966)
/locus_tag="Gdia_0367"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:202340"
misc_feature complement(407298..407549)
/locus_tag="Gdia_0367"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature complement(406863..407201)
/locus_tag="Gdia_0367"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:205468"
gene complement(408058..408942)
/locus_tag="Gdia_0368"
/db_xref="GeneID:6973762"
CDS complement(408058..408942)
/locus_tag="Gdia_0368"
/note="PFAM: phosphatidate cytidylyltransferase;
KEGG: gdi:GDI2148 putative phosphatidate
cytidylyltransferase"
/codon_start=1
/transl_table=11
/product="phosphatidate cytidylyltransferase"
/protein_id="YP_002274779.1"
/db_xref="GI:209542550"
/db_xref="InterPro:IPR000374"
/db_xref="GeneID:6973762"
/translation="MPVPPSDPVSGGRPTQGKPGRNWKDLRARLLSAAVLVPVAALCV
WAGGAPYAALIVLATAGMAIEWGRMFGLRTASWRGVLYLLWPVAAMAAALGGQWRGAF
MVMGGAFVFGPSLWAGQVVIGCAGLALLWLRMMTVPGAGVVLFVVTCVAVSDSGAYLV
GRLLGGPKLAPAISPAKTWSGSLGGLACAMVAGGGVCSLVSGPGNWARGMAFGALMAV
AAQIGDLAESALKRARGVKDSGAIIPGHGGLLDRFDGLLVAAPLAALLSLGAAGGAAF
WYVTQAGLMSALLGARGN"
misc_feature complement(408181..408810)
/locus_tag="Gdia_0368"
/note="Cytidylyltransferase family; Region: CTP_transf_1;
pfam01148"
/db_xref="CDD:110170"
gene complement(408923..409687)
/locus_tag="Gdia_0369"
/db_xref="GeneID:6973763"
CDS complement(408923..409687)
/locus_tag="Gdia_0369"
/EC_number="2.5.1.31"
/note="KEGG: gdi:GDI2149 putative undecaprenyl
pyrophosphate synthetase;
TIGRFAM: undecaprenyl diphosphate synthase;
PFAM: Di-trans-poly-cis-decaprenylcistransferase"
/codon_start=1
/transl_table=11
/product="undecaprenyl diphosphate synthase"
/protein_id="YP_002274780.1"
/db_xref="GI:209542551"
/db_xref="InterPro:IPR001441"
/db_xref="GeneID:6973763"
/translation="MTTSGSTAPVSGLDRGRGAPALPAHVAVIMDGNGRWAAARGLPR
VAGHRAGAEAVRRCIRAAITRGVGCLTLYAFSSENWRRTPDEVADLTALLRYYLRHKV
AELCREGVRIRIIGDLSRFDADVRDEARRAEDMTAANTRLTLVLALSYGGRADIVQAA
ARVAFAARSGTIDPAELDEALFSRFLLTADVPDPDLIVRTSGECRLSNFLLWQSAYAE
LVFIETLWPDFDEHHFDAALDMFARRERRFGARPAL"
misc_feature complement(408941..409624)
/locus_tag="Gdia_0369"
/note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS);
homodimers which catalyze the successive 1'-4 condensation
of the isopentenyl diphosphate (IPP) molecule to
trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP
to form long-chain polyprenyl...; Region: CIS_IPPS;
cl00230"
/db_xref="CDD:213087"
misc_feature complement(408938..409603)
/locus_tag="Gdia_0369"
/note="Putative undecaprenyl diphosphate synthase; Region:
Prenyltransf; pfam01255"
/db_xref="CDD:201689"
misc_feature complement(409595..409597)
/locus_tag="Gdia_0369"
/note="catalytic residue [active]"
/db_xref="CDD:29593"
misc_feature complement(409583..409594)
/locus_tag="Gdia_0369"
/note="putative FPP diphosphate binding site; other site"
/db_xref="CDD:29593"
misc_feature complement(order(409250..409252,409256..409258,
409301..409303,409322..409324,409403..409411,
409415..409420,409460..409474))
/locus_tag="Gdia_0369"
/note="putative FPP binding hydrophobic cleft; other site"
/db_xref="CDD:29593"
misc_feature complement(order(409031..409033,409043..409045,
409052..409054,409064..409066,409073..409078,
409157..409159,409184..409186,409193..409195,
409205..409207,409229..409231))
/locus_tag="Gdia_0369"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29593"
misc_feature complement(order(409073..409075,409091..409093))
/locus_tag="Gdia_0369"
/note="putative IPP diphosphate binding site; other site"
/db_xref="CDD:29593"
gene complement(409782..410348)
/gene="frr"
/locus_tag="Gdia_0370"
/db_xref="GeneID:6973764"
CDS complement(409782..410348)
/gene="frr"
/locus_tag="Gdia_0370"
/note="Rrf; Frr; ribosome-recycling factor; release factor
4; RF4; recycles ribosomes upon translation termination
along with release factor RF-3 and elongation factor EF-G;
A GTPase-dependent process results in release of 50S from
70S; inhibited by release factor RF-1; essential for
viability; structurally similar to tRNAs"
/codon_start=1
/transl_table=11
/product="ribosome recycling factor"
/protein_id="YP_002274781.1"
/db_xref="GI:209542552"
/db_xref="InterPro:IPR002661"
/db_xref="GeneID:6973764"
/translation="MAADQKTLLDDLTRRMDGALESLRRDFAGLRSGRASPALIEPVR
VEAYGGEVPLTQVGSIAVPEARMLTVQVWDRSLVGAVERAIRDSGLGLNPAADGQTVR
VPIPQLTEERRGELARTAGKYSENAKIAVRGVRRDGMDQTKAQEKKGDISQDDVKVWS
DAIQKLTDQYVKRIDEMLAEKEREIKQV"
misc_feature complement(409785..410333)
/gene="frr"
/locus_tag="Gdia_0370"
/note="ribosome recycling factor; Reviewed; Region: frr;
PRK00083"
/db_xref="CDD:178850"
misc_feature complement(409794..410327)
/gene="frr"
/locus_tag="Gdia_0370"
/note="Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are 'recycled'
and ready for another round of...; Region: RRF; cd00520"
/db_xref="CDD:29621"
misc_feature complement(order(410025..410036,410244..410255))
/gene="frr"
/locus_tag="Gdia_0370"
/note="hinge region; other site"
/db_xref="CDD:29621"
gene complement(410426..411166)
/gene="pyrH"
/locus_tag="Gdia_0371"
/db_xref="GeneID:6973765"
CDS complement(410426..411166)
/gene="pyrH"
/locus_tag="Gdia_0371"
/note="Catalyzes the phosphorylation of UMP to UDP"
/codon_start=1
/transl_table=11
/product="uridylate kinase"
/protein_id="YP_002274782.1"
/db_xref="GI:209542553"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR015963"
/db_xref="GeneID:6973765"
/translation="MTDQATEKTIGFQRVLLKVSGEALMGEGSYGIDPVMVDTIATDI
AEVARTGVEICLVIGGGNIFRGVAAAARGMDRAQGDYAGMLATVINALMVQNALERHG
VPTRVMSAIQMSSVAEPYIRRRAVRHMEKGRVVIFAGGTGNPFFTTDTAAALRAAEMD
CNALLKGTQVDGVYSADPRKVKDATRFEQLTYLDVLAKDLHVMDAAAISLARENRLPI
VVFNIHAPGAFPKVMRGEGLYTRIVETA"
misc_feature complement(410441..411130)
/gene="pyrH"
/locus_tag="Gdia_0371"
/note="UMP kinase (UMPK)-Ec, the microbial/chloroplast
uridine monophosphate kinase (uridylate kinase) enzyme
that catalyzes UMP phosphorylation and plays a key role in
pyrimidine nucleotide biosynthesis; regulation of this
process is via feed-back control and...; Region:
AAK_UMPK-PyrH-Ec; cd04254"
/db_xref="CDD:58620"
misc_feature complement(order(410636..410641,410645..410647,
410651..410653,410660..410665,410720..410725,
410984..410992,411101..411106,411113..411115))
/gene="pyrH"
/locus_tag="Gdia_0371"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(410723..410731,410735..410740,
410744..410746,410915..410920,410927..410929,
410969..410974,410984..410992))
/gene="pyrH"
/locus_tag="Gdia_0371"
/note="uridine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(410525..410527,410693..410698,
410705..410707,410732..410740,410744..410746,
410768..410770,410786..410788,410795..410797,
410807..410809,410849..410851,410879..410881,
410900..410902,410921..410926,410948..410953))
/gene="pyrH"
/locus_tag="Gdia_0371"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58620"
gene complement(411291..412184)
/gene="era"
/locus_tag="Gdia_0372"
/db_xref="GeneID:6973766"
CDS complement(411291..412184)
/gene="era"
/locus_tag="Gdia_0372"
/note="Era; Escherichia coli Ras-like protein; Bex;
Bacillus Era-complementing segment; essential protein in
Escherichia coli that is involved in many cellular
processes; GTPase; binds the cell membrane through
apparent C-terminal domain; mutants are arrested during
the cell cycle; Streptococcus pneumoniae Era binds to RNA
and Escherichia coli Era binds 16S rRNA and 30S ribosome"
/codon_start=1
/transl_table=11
/product="GTP-binding protein Era"
/protein_id="YP_002274783.1"
/db_xref="GI:209542554"
/db_xref="InterPro:IPR001005"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004044"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005662"
/db_xref="InterPro:IPR006073"
/db_xref="InterPro:IPR013684"
/db_xref="GeneID:6973766"
/translation="MTTRCGFVAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRV
LGILMRGESQILLVDTPGIFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESV
RAIVERLAQSRRRVWLVLNKTDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVED
LLSALAASLPEGPYLYPEDDLTDLPDRLLAAELVREQIFLQTHEEVPYAATAETESFR
ELPDGSVRIEVTIYVARAGHKAILIGEKGSRIRSIGERARKDLSRLLDRTCHLFLNVK
ERAGWDEERARLRAIGLDDTP"
misc_feature complement(411306..412184)
/gene="era"
/locus_tag="Gdia_0372"
/note="GTPase Era; Reviewed; Region: era; PRK00089"
/db_xref="CDD:178854"
misc_feature complement(411678..412178)
/gene="era"
/locus_tag="Gdia_0372"
/note="E. coli Ras-like protein (Era) is a multifunctional
GTPase; Region: Era; cd04163"
/db_xref="CDD:206726"
misc_feature complement(412128..412151)
/gene="era"
/locus_tag="Gdia_0372"
/note="G1 box; other site"
/db_xref="CDD:206726"
misc_feature complement(order(411729..411734,411813..411815,
411819..411824,411999..412001,412065..412073,
412083..412085,412125..412145))
/gene="era"
/locus_tag="Gdia_0372"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206726"
misc_feature complement(order(412056..412100,412104..412106))
/gene="era"
/locus_tag="Gdia_0372"
/note="Switch I region; other site"
/db_xref="CDD:206726"
misc_feature complement(412065..412067)
/gene="era"
/locus_tag="Gdia_0372"
/note="G2 box; other site"
/db_xref="CDD:206726"
misc_feature complement(order(411933..411938,411996..412013))
/gene="era"
/locus_tag="Gdia_0372"
/note="Switch II region; other site"
/db_xref="CDD:206726"
misc_feature complement(411999..412010)
/gene="era"
/locus_tag="Gdia_0372"
/note="G3 box; other site"
/db_xref="CDD:206726"
misc_feature complement(411813..411824)
/gene="era"
/locus_tag="Gdia_0372"
/note="G4 box; other site"
/db_xref="CDD:206726"
misc_feature complement(411726..411734)
/gene="era"
/locus_tag="Gdia_0372"
/note="G5 box; other site"
/db_xref="CDD:206726"
misc_feature complement(411351..411572)
/gene="era"
/locus_tag="Gdia_0372"
/note="KH domain; Region: KH_2; pfam07650"
/db_xref="CDD:203707"
misc_feature complement(411444..411455)
/gene="era"
/locus_tag="Gdia_0372"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48407"
gene complement(412224..412973)
/locus_tag="Gdia_0373"
/db_xref="GeneID:6973767"
CDS complement(412224..412973)
/locus_tag="Gdia_0373"
/EC_number="3.1.26.3"
/note="PFAM: ribonuclease III; double-stranded RNA binding
domain protein;
KEGG: gdi:GDI2153 putative ribonuclease III"
/codon_start=1
/transl_table=11
/product="Ribonuclease III"
/protein_id="YP_002274784.1"
/db_xref="GI:209542555"
/db_xref="InterPro:IPR000999"
/db_xref="InterPro:IPR001159"
/db_xref="InterPro:IPR011907"
/db_xref="GeneID:6973767"
/translation="MTASESGGADGVVASVEARVGYRFRRPDLLREALTHRSAAHQRN
GGGARRSRQPAARRGAGSNERLEFIGDRVLGLVMAEWLLERFPDEQEGALGPRHAHLV
SRPVLAAIAGTMNLQQALDVAEHEARAGVRQVANVLADAVEAILGAIYLDGGLEPARR
FVRAAWNEAIVAQAQPPKDPKTALQEWVLARGLPLPAYRTVQMDGPSHAPRFVIAVTA
AGQSAEGIAGSKRAAESAAAADLLRLVDERQ"
misc_feature complement(412287..412925)
/locus_tag="Gdia_0373"
/note="ribonuclease III, bacterial; Region: RNaseIII;
TIGR02191"
/db_xref="CDD:211723"
misc_feature complement(412464..412892)
/locus_tag="Gdia_0373"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:29697"
misc_feature complement(order(412497..412499,412524..412526,
412692..412694,412722..412730,412734..412739,
412746..412751,412758..412760,412767..412772,
412779..412784))
/locus_tag="Gdia_0373"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29697"
misc_feature complement(order(412545..412547,412554..412556,
412761..412763,412773..412775,412782..412784))
/locus_tag="Gdia_0373"
/note="active site"
/db_xref="CDD:29697"
misc_feature complement(order(412545..412547,412554..412556,
412773..412775))
/locus_tag="Gdia_0373"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29697"
misc_feature complement(412245..412439)
/locus_tag="Gdia_0373"
/note="Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III; Region:
DSRM; cd00048"
/db_xref="CDD:28930"
misc_feature complement(order(412272..412274,412281..412292,
412416..412421,412437..412439))
/locus_tag="Gdia_0373"
/note="dsRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:28930"
gene complement(412970..413782)
/locus_tag="Gdia_0374"
/db_xref="GeneID:6973768"
CDS complement(412970..413782)
/locus_tag="Gdia_0374"
/EC_number="3.4.21.89"
/note="KEGG: gdi:GDI2154 putative signal peptidase I;
TIGRFAM: signal peptidase I;
PFAM: peptidase S24 and S26 domain protein"
/codon_start=1
/transl_table=11
/product="signal peptidase I"
/protein_id="YP_002274785.1"
/db_xref="GI:209542556"
/db_xref="InterPro:IPR000223"
/db_xref="InterPro:IPR011056"
/db_xref="GeneID:6973768"
/translation="MDDPNKTHSSSLPSAGAVPALRGLWDLIRTILIAGLLAVGVRTV
LFEPFNIPSGSMIPTLQVGDYLWVAKYSYGYSHFSLPRSPDLFDGRIFGSLPHRGDVA
VFRFTRDTSIDYIKRIVGLPGDRVQVRGGELYINDTLVPREARGNYVAVDEHRTRMEG
QRYSESLPGSGGRPPVTHDILKLTNEGFQNDTPVYVVPSGYFFAMGDNRDDSADSRFM
GDDPEDLGFVPMENLIGQAKWIFLSIDARYPAWEFWMWPVEIRWDRLFQGVR"
misc_feature complement(413048..413704)
/locus_tag="Gdia_0374"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:211726"
misc_feature complement(<413420..413644)
/locus_tag="Gdia_0374"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature complement(order(413435..413437,413618..413620))
/locus_tag="Gdia_0374"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
misc_feature complement(413072..>413179)
/locus_tag="Gdia_0374"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
gene complement(413939..414349)
/gene="acpS"
/locus_tag="Gdia_0375"
/db_xref="GeneID:6973769"
CDS complement(413939..414349)
/gene="acpS"
/locus_tag="Gdia_0375"
/EC_number="2.7.8.7"
/note="Catalyzes the formation of holo-ACP, which mediates
the essential transfer of acyl fatty acid intermediates
during the biosynthesis of fatty acids and lipids"
/codon_start=1
/transl_table=11
/product="4'-phosphopantetheinyl transferase"
/protein_id="YP_002274786.1"
/db_xref="GI:209542557"
/db_xref="InterPro:IPR002582"
/db_xref="InterPro:IPR004568"
/db_xref="InterPro:IPR008278"
/db_xref="GeneID:6973769"
/translation="MSLIGIGSDLCDIRRIERVLARHGERFLVRVFTDAERRRAERRH
GQARLGAYAKRWAAKEACAKALGTGFSHGVFHHDLGVDNLPGGQPVMVLTGGAKTRLH
VLTPPGSTARILLSMTDEYPYAFAQVMIETGPLP"
misc_feature complement(413957..414340)
/gene="acpS"
/locus_tag="Gdia_0375"
/note="4'-phosphopantetheinyl transferase; Provisional;
Region: acpS; PRK00070"
/db_xref="CDD:178838"
gene complement(414346..416577)
/locus_tag="Gdia_0376"
/db_xref="GeneID:6973770"
CDS complement(414346..416577)
/locus_tag="Gdia_0376"
/EC_number="2.7.6.5"
/note="KEGG: gdi:GDI2156 putative
guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase;
TIGRFAM: RelA/SpoT family protein;
PFAM: TGS domain protein; metal-dependent phosphohydrolase
HD sub domain; RelA/SpoT domain protein;
SMART: metal-dependent phosphohydrolase HD region"
/codon_start=1
/transl_table=11
/product="(p)ppGpp synthetase I SpoT/RelA"
/protein_id="YP_002274787.1"
/db_xref="GI:209542558"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR004095"
/db_xref="InterPro:IPR004811"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR007685"
/db_xref="GeneID:6973770"
/translation="MPSDPDAPPAPARVISCEGLLRRIRSYDPDADLDLIRRAFAVAQ
AAHAGQVRDNGDPYITHPLAVASILAGFHLDPSSIATALLHDTIEDTGVTHDRLRAEF
GPTIADLVDGVTKLTRLELQSDRTKQAENFRKLVLAMSKDIRVLIVKLADRLHNMRTL
HYVQRLDRRQRIARETMEIYAPLAGRIGMDKVKTELQNLSFAELEPEANATIRARLNY
LRGQGADVIEEVRRELAHLCREAGLGEVEVTGREKSPFSIWEKMQNRNVAFEQLSDIM
AFRILVPTREACYIALGAVHAAYPVIVGRFKDYISTPKANGYQSLHTGVTLRQPRNQK
IEVQIRTAEMHDIAENGVASHWLYKQLPGAGEDAARTVTGLRWVQDLLDILEDSAAPD
EFLENTKLELYQDQVFCFTPKGQLISLPRGATPVDFAYAVHSQVGDSCVGARINGRLM
PLRHELQNGDQVEIMTARGGTPSPSWERFVVTGKARARIRRHVAAQQREAHVDGGRAA
LAKAFRQEGVDGSEKVLDSILPDLKLVSVEDLYVAVGNGNISPRDVVHAAYPELRQTP
RAPRMVPGIPMRAPSRVASRPKPGGGMALAGIGPGIAVHFAGCCHPLPGDKIVGIVAT
GKGITIHMAGCQTLESFAATPERFMDVDWDYDIIGRGATEPHIGRLSVIAANEPSVLA
TLTNTASKHDGTVVNLRIVNRQLDFMEILADIEVRDLRHLSSVIAALRAANGVVQVER
AKG"
misc_feature complement(414358..416526)
/locus_tag="Gdia_0376"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:30665"
misc_feature complement(416011..416433)
/locus_tag="Gdia_0376"
/note="HD domain; Region: HD_4; pfam13328"
/db_xref="CDD:205508"
misc_feature complement(415531..415896)
/locus_tag="Gdia_0376"
/note="Nucleotidyltransferase (NT) domain of RelA- and
SpoT-like ppGpp synthetases and hydrolases; Region:
NT_Rel-Spo_like; cd05399"
/db_xref="CDD:143389"
misc_feature complement(order(415531..415536,415558..415560,
415564..415566,415570..415572,415612..415614,
415624..415626,415630..415632,415636..415638,
415651..415653,415657..415659,415741..415743,
415753..415758,415819..415821,415825..415827))
/locus_tag="Gdia_0376"
/note="synthetase active site [active]"
/db_xref="CDD:143389"
misc_feature complement(order(415534..415536,415564..415566,
415570..415572,415612..415614,415624..415626,
415630..415632,415636..415638,415651..415653,
415657..415659,415825..415827))
/locus_tag="Gdia_0376"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143389"
misc_feature complement(order(415570..415572,415756..415758))
/locus_tag="Gdia_0376"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143389"
misc_feature complement(415180..415359)
/locus_tag="Gdia_0376"
/note="TGS_RelA_SpoT: The RelA (SpoT) protein, also
referred to as ppGpp hydrolase/synthetase, is a
ribosome-associated protein that is activated during amino
acid starvation and thought to mediate the stringent
response. RelA contains a TGS domain, named after...;
Region: TGS_RelA_SpoT; cd01668"
/db_xref="CDD:133438"
misc_feature complement(414358..414570)
/locus_tag="Gdia_0376"
/note="ACT domain found C-terminal of the RelA/SpoT
domains; Region: ACT_RelA-SpoT; cd04876"
/db_xref="CDD:153148"
gene complement(416687..417085)
/locus_tag="Gdia_0377"
/db_xref="GeneID:6973771"
CDS complement(416687..417085)
/locus_tag="Gdia_0377"
/note="Promotes RNA polymerase assembly. Latches the N-
and C-terminal regions of the beta' subunit thereby
facilitating its interaction with the beta and alpha
subunits"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit omega"
/protein_id="YP_002274788.1"
/db_xref="GI:209542559"
/db_xref="InterPro:IPR003716"
/db_xref="InterPro:IPR006110"
/db_xref="GeneID:6973771"
/translation="MARVTVEDCVERVPNRFELVLLAAQRARGLSRGEELTVDRDNDK
NPVVALREIADQTIVLEQIRSDLVRSLARAPEPEPADEEVMDLIPTEQNIFGLQDVSA
EEEASHGTAGMSAEELEAAIEAELGGRARR"
misc_feature complement(416879..417085)
/locus_tag="Gdia_0377"
/note="DNA-directed RNA polymerase subunit omega;
Reviewed; Region: rpoZ; PRK00392"
/db_xref="CDD:178998"
gene complement(417166..417663)
/locus_tag="Gdia_0378"
/db_xref="GeneID:6973772"
CDS complement(417166..417663)
/locus_tag="Gdia_0378"
/note="TIGRFAM:
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase;
PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase
HPPK;
KEGG: gdi:GDI2158 putative
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_002274789.1"
/db_xref="GI:209542560"
/db_xref="InterPro:IPR000550"
/db_xref="GeneID:6973772"
/translation="MILIAIGANLPRAEGSTPLETCRWAVEHIASIPGVRVVAVSAWY
ESAPIPPSGQPPYVNGVVAATGELDPAVLLAALQGIEARAGRRRTVANAARPLDLDII
AMGDLVRDAPDPILPHPRADARAFVLLPLRDVAPGWRDPRSGRTVDALVADLPDQQIR
RLEAD"
misc_feature complement(417262..417660)
/locus_tag="Gdia_0378"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:29601"
misc_feature complement(order(417286..417288,417292..417294,
417307..417312,417319..417321,417361..417366,
417370..417372,417379..417381,417388..417390,
417400..417402,417406..417408,417421..417423,
417430..417432,417442..417444,417487..417489,
417493..417495,417517..417519,417523..417528,
417643..417645))
/locus_tag="Gdia_0378"
/note="catalytic center binding site [active]"
/db_xref="CDD:29601"
misc_feature complement(order(417292..417294,417307..417312,
417319..417321,417361..417366,417379..417381,
417400..417402,417406..417408,417421..417423,
417430..417432,417442..417444))
/locus_tag="Gdia_0378"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29601"
gene 417890..418501
/locus_tag="Gdia_0379"
/db_xref="GeneID:6973773"
CDS 417890..418501
/locus_tag="Gdia_0379"
/note="PFAM: protein of unknown function DUF88;
KEGG: gdi:GDI2159 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274790.1"
/db_xref="GI:209542561"
/db_xref="InterPro:IPR002790"
/db_xref="GeneID:6973773"
/translation="MFFQPNERVCLFIDGASLYSASRHLGFDVDYRNLLTFFRSKCHV
IRAYYYSAILESEEYSPLKPLTDWLVYNGYFLVTKTAREFVDHNGRRRVKGNMDIELA
VDMMEMAPRIDHAVLFSGDADFRRLLETVQRQGVRTSVISSIRTSPPLIGDELRRQAD
QFIELADIAPQFTRRQAEARPQRQQQAPVRHPADQISELDHGD"
misc_feature 417899..418405
/locus_tag="Gdia_0379"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1432"
/db_xref="CDD:31621"
misc_feature 417908..418387
/locus_tag="Gdia_0379"
/note="LabA_like proteins; Region: LabA; cd10911"
/db_xref="CDD:199897"
misc_feature order(417929..417931,417938..417940,418181..418183,
418244..418246,418250..418252,418256..418258)
/locus_tag="Gdia_0379"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:199897"
gene 418501..419199
/locus_tag="Gdia_0380"
/db_xref="GeneID:6973774"
CDS 418501..419199
/locus_tag="Gdia_0380"
/note="PFAM: Uracil-DNA glycosylase superfamily;
KEGG: gdi:GDI2160 putative uracil DNA glycosylase"
/codon_start=1
/transl_table=11
/product="uracil-DNA glycosylase"
/protein_id="YP_002274791.1"
/db_xref="GI:209542562"
/db_xref="InterPro:IPR005122"
/db_xref="GeneID:6973774"
/translation="MPPRSRALARPAAPSVSTSPGPDIPPRECPACPRLVEYRLANQA
AHPDWWNAPVPPWGESSASLLIVGLAPGVKGANRTGRPFTGDYAGTLLYETLIEYGFA
TGRYGADPADGLVLNDCRIVNAVRCVPPANLPQTSEVRTCNHFLRSELTSMPNLKAVL
TLGVVAHNATVAACGIPMSRIRFTHGQVQTLPNGLVLTDSYHVSRYNTNTGVLTTDMF
RAVVARLRALIDAA"
misc_feature 418585..419181
/locus_tag="Gdia_0380"
/note="Family-5 Uracil-DNA glycosylases (UDG), found in
thermophilic organisms; Region: UDG_F5_TTUDGB_like;
cd10031"
/db_xref="CDD:198429"
misc_feature order(418585..418587,418591..418596,418603..418605,
418657..418659,418873..418881,418921..418926,
418933..418935)
/locus_tag="Gdia_0380"
/note="Fe-S cluster binding site [ion binding]; other
site"
/db_xref="CDD:198429"
misc_feature order(418705..418710,418714..418716,418756..418764,
418894..418896,418906..418908,418987..418992,
419047..419049,419101..419106,419110..419121,
419125..419130,419134..419136)
/locus_tag="Gdia_0380"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:198429"
misc_feature order(418705..418716,418723..418728,418744..418749,
418756..418764,418894..418896,419104..419106,
419110..419115)
/locus_tag="Gdia_0380"
/note="active site"
/db_xref="CDD:198429"
gene complement(419238..420734)
/locus_tag="Gdia_0381"
/db_xref="GeneID:6973775"
CDS complement(419238..420734)
/locus_tag="Gdia_0381"
/note="malate dehydrogenase; catalyzes the oxidation of
malate to oxaloacetate"
/codon_start=1
/transl_table=11
/product="malate:quinone oxidoreductase"
/protein_id="YP_002274792.1"
/db_xref="GI:209542563"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR006231"
/db_xref="GeneID:6973775"
/translation="MTSNSTRTDSAYDVVLIGGGVMSATLGALLKLLQPDWSIGLFGR
LDDVAQESSNAWNNAGTGHSALCELNYTPERADGSIDISKAVGVNEAFQVSRQFWAYL
VESGVISSPRDFLNPIPHMSFVWGDENCDYLRRRYEALKDHPLFSGMRFSTDPAQLKQ
WMPLVMEGRKAGTPLAATWIASGTDVNFGALTHLLVDFLSQQSGFDLKLGHEVQDLKR
DEAGTWQVSVRDLATNHALKVAARFVFIGAGGGALPLLQKTGIPESKGVGGFPVSGQF
LRCTNPDVAAHHHAKVYGKASVGAPPMSVPHLDTRVIDGKAGLLFGPYAGFSTKFLKH
GSLWDLPKSIHMDNLGAMLAVARDNMPLTRYLIQQVLQSNEARLAALRDFVPTARAED
WELIVAGQRVQVIKKDEKKGGVLQFGTEVVTGANGTVAALLGASPGASTAVPIMLTVI
RKCFPGELPRWDAKLKEMIPSFGGSLADRPDLCAQVHEHTTRVLLLEG"
misc_feature complement(419244..420713)
/locus_tag="Gdia_0381"
/note="malate:quinone oxidoreductase; Validated; Region:
PRK05257"
/db_xref="CDD:179979"
misc_feature complement(419295..420701)
/locus_tag="Gdia_0381"
/note="Predicted dehydrogenase [General function
prediction only]; Region: COG0579"
/db_xref="CDD:30924"
STS 420412..422092
/standard_name="GDB:182516"
/db_xref="UniSTS:155384"
gene complement(421030..422019)
/locus_tag="Gdia_0382"
/db_xref="GeneID:6973776"
CDS complement(421030..422019)
/locus_tag="Gdia_0382"
/EC_number="2.3.1.19"
/note="PFAM: phosphate acetyl/butaryl transferase;
KEGG: gdi:GDI2163 putative phosphate acetyltransferase"
/codon_start=1
/transl_table=11
/product="phosphate butyryltransferase"
/protein_id="YP_002274793.1"
/db_xref="GI:209542564"
/db_xref="InterPro:IPR002505"
/db_xref="GeneID:6973776"
/translation="MMAPPTPGHGMTDEVTDAKMDAMIAGPGFLDTLSARLAGSPPVD
AAVIYPCSLPSLQAAVGLGQQGIAQPILIGPGERIRALARSASLDLAACRLVEAADEH
LAAARGVALARDGTARMLMKGSLHSSIFLREIGHHESGLRTDRRMSHVFVLDVPTCSR
PLLVTDGAVNIAPDLPARRDIVQNAIDLARTIGISRPRVAILSAIETVNPELPSTVDA
ALLAKMAERGQITGGIVDGPLALDNALSAEAARCKGVESPVAGCADILVVPDLEAGNM
LAKQLTFMGGASAAGVVLGARVPVVLTSRADSVRTRILSGILAAVLAQAWGMD"
misc_feature complement(421045..421959)
/locus_tag="Gdia_0382"
/note="Phosphate acetyl/butaryl transferase; Region:
PTA_PTB; cl00390"
/db_xref="CDD:212210"
misc_feature complement(421045..421935)
/locus_tag="Gdia_0382"
/note="Phosphotransacetylase [Energy production and
conversion]; Region: Pta; COG0280"
/db_xref="CDD:30628"
gene complement(422035..422658)
/locus_tag="Gdia_0383"
/db_xref="GeneID:6973777"
CDS complement(422035..422658)
/locus_tag="Gdia_0383"
/note="PFAM: Ferric reductase domain protein transmembrane
component domain;
KEGG: gdi:GDI2164 hypothetical protein"
/codon_start=1
/transl_table=11
/product="ferric reductase transmembrane domain-containing
protein"
/protein_id="YP_002274794.1"
/db_xref="GI:209542565"
/db_xref="InterPro:IPR013130"
/db_xref="GeneID:6973777"
/translation="MAVSRRGPSALLTRQGLIRFGLYAVGLVPAVATFVMGATNRLGA
DPVNSFERTLGLWALRFLILSLCVTPLRERTGVNLLRYRRVLGLLAFWYALFHLSAYV
GLDQGFDLPVLLADVTRRPFIILGMVAFTILVVLAATSNAWSIRRLGRRWRSVHRWVY
LAALCAAIHFILSFKVIRAETLVYALIVVGLLAYRLLPAALRRPRVA"
misc_feature complement(422092..422619)
/locus_tag="Gdia_0383"
/note="putative sulfite oxidase subunit YedZ; Reviewed;
Region: PRK05419"
/db_xref="CDD:180066"
gene complement(422660..423613)
/locus_tag="Gdia_0384"
/db_xref="GeneID:6973778"
CDS complement(422660..423613)
/locus_tag="Gdia_0384"
/note="in Escherichia coli this periplasmic enzyme was
found to encode the periplasmic catalytic subunit of an
oxidoreductase; sulfite oxidase activity not demonstrated;
requires inner membrane anchor protein YedZ"
/codon_start=1
/transl_table=11
/product="putative sulfite oxidase subunit YedY"
/protein_id="YP_002274795.1"
/db_xref="GI:209542566"
/db_xref="InterPro:IPR000572"
/db_xref="InterPro:IPR006311"
/db_xref="GeneID:6973778"
/translation="MSVFRYPRPPSSDITPHAAWLSRRDILATGLAGAAGAILPPRIA
QADTLAARPGPLSDGGLTPTPLQDVTHYNNFYEFGLEKTDPAERSGDFHPRPWTLRVE
GMVAKPRTYDIDTLLARPLEERIYRMRCVEAWSMVIPWIGFSLGDLLREVEPLGSARY
VAFESVLRPSEMPGQSGLLPVLDWPYVEALRLDEALHPLTILAVGLYGQTLPNQNGAP
VRLVVPWKYGFKGIKSVVRIRLTDSRPRTAWNVRAPDEYGFYANVNPAVDHPRWSQAT
ERPIGVRGGFFGAARQPTLPFNGYGAQVAGLYAGMDLRRDF"
misc_feature complement(422663..423613)
/locus_tag="Gdia_0384"
/note="TMAO/DMSO reductase; Reviewed; Region: PRK05363"
/db_xref="CDD:180039"
sig_peptide complement(423473..423613)
/locus_tag="Gdia_0384"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.842) with cleavage site probability 0.828 at
residue 47"
misc_feature complement(422756..423406)
/locus_tag="Gdia_0384"
/note="Sulfite oxidase (SO) family, molybdopterin binding
domain. This molybdopterin cofactor (Moco) binding domain
is found in a variety of oxidoreductases, main members of
this family are nitrate reductase (NR) and sulfite oxidase
(SO). SO catalyzes the...; Region: SO_family_Moco;
cl00199"
/db_xref="CDD:206895"
misc_feature complement(order(422912..422917,422921..422923,
422930..422932,422954..422956,422969..422971,
423056..423058,423224..423226,423386..423388,
423392..423394,423398..423400))
/locus_tag="Gdia_0384"
/note="Moco binding site; other site"
/db_xref="CDD:29401"
misc_feature complement(423224..423226)
/locus_tag="Gdia_0384"
/note="metal coordination site [ion binding]; other site"
/db_xref="CDD:29401"
gene 423704..424612
/locus_tag="Gdia_0385"
/db_xref="GeneID:6973779"
CDS 423704..424612
/locus_tag="Gdia_0385"
/note="PFAM: NADP oxidoreductase coenzyme F420-dependent;
6-phosphogluconate dehydrogenase NAD-binding;
KEGG: gdi:GDI2166 6-phosphogluconate dehydrogenase,
NAD-binding"
/codon_start=1
/transl_table=11
/product="NAD-binding 6-phosphogluconate dehydrogenase"
/protein_id="YP_002274796.1"
/db_xref="GI:209542567"
/db_xref="InterPro:IPR004455"
/db_xref="InterPro:IPR006115"
/db_xref="GeneID:6973779"
/translation="MSNSSANSSTANGSTGTIGFIGFGAMASRMGHNLREAGYQIMAY
TPSGKGGDGTTRFLPTPRALAEAAGTVLVCVPDDESLAKSLYGPDGALAGMTKGALLV
NTSSVSPEASAALAAAAGKQDVAVLDAPVSGSTPEAESGTLVVLVGGDAAVVARAQPI
FDVIGKATIHAGPSGSGTKLKLVVNGIMGAGLAAVAEGVTYGLAAGLDRDMLFGALDS
VAVISPHHKRKLKAARVGDFTPQFPTRLMQKDMRLLMTDAARAEAPLATMAATTQLLS
LTRRTHPDDDYSALFAVLERTVANSP"
misc_feature 423776..424588
/locus_tag="Gdia_0385"
/note="3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism];
Region: MmsB; COG2084"
/db_xref="CDD:32267"
misc_feature 423779..>424297
/locus_tag="Gdia_0385"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene complement(424634..425512)
/locus_tag="Gdia_0386"
/db_xref="GeneID:6973780"
CDS complement(424634..425512)
/locus_tag="Gdia_0386"
/note="KEGG: gdi:GDI2167 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002274797.1"
/db_xref="GI:209542568"
/db_xref="GeneID:6973780"
/translation="MTNTTEKRAAETGLSAMGEIARRSDPDRFFCTLFLPASVREDAF
TLIAFNHESVRALSGMHSRSVAGPMAGLIRLQWWREIVEGASHPHEVADPLRALIRAG
RVRRDTLLGILDAREAELEGLPDWAAWRAAMRAGAGGVQAAIAQVAGTGTTDPDLLRA
VEFLGAAYGVGGLLRHMGAVLAGGRCPLPEPALQEFGLSGESIRDGAGIQGADLTPLR
ARLRDEGREFLAQAGMQVAAGAGRVRLPRAVRAAGLPGALARRDLGRGHDREVGAARG
LGDRLAVMAAMARGRI"
misc_feature complement(424826..425452)
/locus_tag="Gdia_0386"
/note="Isoprenoid Biosynthesis enzymes, Class 1; Region:
Isoprenoid_Biosyn_C1; cl00210"
/db_xref="CDD:206903"
gene 425662..426270
/locus_tag="Gdia_0387"
/db_xref="GeneID:6973781"
CDS 425662..426270
/locus_tag="Gdia_0387"
/EC_number="1.15.1.1"
/note="PFAM: manganese and iron superoxide dismutase;
KEGG: gdi:GDI2168 superoxide dismutase"
/codon_start=1
/transl_table=11
/product="Superoxide dismutase"
/protein_id="YP_002274798.1"
/db_xref="GI:209542569"
/db_xref="InterPro:IPR001189"
/db_xref="GeneID:6973781"
/translation="MAFELPTLPFQTNALAARGMCQETLELHHGKHHQAYVTALNGFV
EAKPELQGKSLEEIILAVKGDAASAPVFNNAGQHWNHILFWQNLSPTGGAIPDALAKK
LAEDFGSVDDFKTAFKTAATTQFGSGWAWLVLAADGKLKVTKTANGSNPLAEGQGKVL
LGLDVWEHSYYLDFRNRRPDYTTNYLDKLANYEFAEAQFKAA"
misc_feature 425662..426267
/locus_tag="Gdia_0387"
/note="Superoxide dismutase [Inorganic ion transport and
metabolism]; Region: SodA; COG0605"
/db_xref="CDD:30950"
misc_feature 425665..425928
/locus_tag="Gdia_0387"
/note="Iron/manganese superoxide dismutases, alpha-hairpin
domain; Region: Sod_Fe_N; pfam00081"
/db_xref="CDD:200985"
misc_feature 425929..426258
/locus_tag="Gdia_0387"
/note="Iron/manganese superoxide dismutases, C-terminal
domain; Region: Sod_Fe_C; pfam02777"
/db_xref="CDD:202388"
gene complement(426354..427772)
/locus_tag="Gdia_0388"
/db_xref="GeneID:6973782"
CDS complement(426354..427772)
/locus_tag="Gdia_0388"
/note="KEGG: gdi:GDI2169 putative galactose-proton
symporter;
TIGRFAM: sugar transporter;
PFAM: General substrate transporter; major facilitator
superfamily MFS_1"
/codon_start=1
/transl_table=11
/product="sugar transporter"
/protein_id="YP_002274799.1"
/db_xref="GI:209542570"
/db_xref="InterPro:IPR003663"
/db_xref="InterPro:IPR005828"
/db_xref="InterPro:IPR005829"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:6973782"
/translation="MEAYGYAATTGSRHLRKAVPGRAGLVAGLAAVAGLMFGLDIGVI
SGALSLIAQEFDATQFQQEAIVAAMMLGAAVGVPIAGWLSFDLGRKRTLVIGASLFIV
GSTACALSGSVGMLIAARIVLGLAIGISTFTAPLYIAEIADAANRGAMVSIYQLMVTI
GILTAFVSDALFAYFDAWRWMLGIVAFPGIVFLIGVAFLPASPRWLMLRGRRDEARRA
LLELRGQAHGVARELSEIDAQLRTQGRGWALFRSNRNFRRAVFLGVMLQCVQQFTGMN
VVMYYAPRIFGLAGFAEHARLWGTATVGGVNMAATFMAIWLVDRWGRRPILICGLMVM
SVGMAGLGLMLREGMGQGADQTMAVALLLCFVAGFAFSAGPLVWVLCSEIQPLQGRDF
GIACSTATNWISNMIVGVSFLTLLDRLGRPETFWLYAGLNALFVVLVALFVPETKGLS
LERIERDLMGGVRLRDIGRRRP"
misc_feature complement(426411..427667)
/locus_tag="Gdia_0388"
/note="MFS transporter, sugar porter (SP) family; Region:
SP; TIGR00879"
/db_xref="CDD:162084"
misc_feature complement(<427173..427667)
/locus_tag="Gdia_0388"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(427287..427289,427305..427310,
427317..427322,427356..427358,427365..427370,
427377..427382,427389..427394,427530..427535,
427539..427544,427554..427556,427563..427568,
427575..427577,427626..427631,427635..427643,
427650..427652))
/locus_tag="Gdia_0388"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(426483..>427007)
/locus_tag="Gdia_0388"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(427862..428647)
/locus_tag="Gdia_0389"
/db_xref="GeneID:6973783"
CDS complement(427862..428647)
/locus_tag="Gdia_0389"
/note="PFAM: short-chain dehydrogenase/reductase SDR;
KEGG: gdi:GDI2170 putative oxidoreductase"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_002274800.1"
/db_xref="GI:209542571"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:6973783"
/translation="MVGPGPDTGSYARYPSLAGRSVLVTGGASGIGAALVRAFADQGA
RVAFVDLDRVAADALAGEVAQAGRQVLFIPCDVTDVAALREAVATAFGAHGPVDILLN
NAGNDARHTLDEVDVAMWERLSAINIRAQFFAAQAVAPGMRAAGRGSIVCLGSTGWMQ
KNAGYPIYVTAKAAVLGLVNALARELGQDHIRVNALVPGWVMTERQRRLWLTPEGERQ
IDRSQCLPGRVEPGDIARMALFLAADDSRMCSGQQFIVDGGWV"
misc_feature complement(427865..428605)
/locus_tag="Gdia_0389"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:180183"
misc_feature complement(427877..428584)
/locus_tag="Gdia_0389"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature complement(order(428036..428041,428045..428056,
428132..428134,428144..428146,428183..428191,
428270..428272,428333..428341,428417..428425,
428492..428500,428555..428566,428570..428572))
/locus_tag="Gdia_0389"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature complement(order(428132..428134,428144..428146,
428183..428185,428267..428269))
/locus_tag="Gdia_0389"
/note="active site"
/db_xref="CDD:212491"
gene complement(428641..429789)
/locus_tag="Gdia_0390"
/db_xref="GeneID:6973784"
CDS complement(428641..429789)
/locus_tag="Gdia_0390"
/note="PFAM: Mandelate racemase/muconate lactonizing
protein;
KEGG: gdi:GDI2171 putative galactonate dehydratase"
/codon_start=1
/transl_table=11
/product="galactonate dehydratase"
/protein_id="YP_002274801.1"
/db_xref="GI:209542572"
/db_xref="InterPro:IPR001354"
/db_xref="InterPro:IPR013341"
/db_xref="InterPro:IPR013342"
/db_xref="GeneID:6973784"
/translation="MKITKLTTFQVPPRWLFLKIETDEGISGWGEPVVEGRADTVAAA
VAELADYLVGKDPFRIEDHWTVLYRGGFYRGGAVHMSAIAGIDQALWDIKGRAFGVPV
HDLLGGRCRDRIRVYSWIGGDRPADTAQAVRAVVDRGFTAIKMNATEELQYVDSHAKV
DDVIARVAAIREEAGPYLGIGVDFHGRVHKPMAKVLARELEPYDLMFIEEPVLSEHLE
DLPEITKHTSIPIALGERLFSRWDFKRVFEQGCVDIIQPDPSHAGGITETRKIAAMAE
AYDVAVALHCPLGPIALAANLQLDALCYNAFIQEQSLGIHYNKTNDLLDYLVDPDVFA
YRDGHVDIPTGPGLGIEINEDYVRARAAEGHRWRNPVWRHRDGSFAEW"
misc_feature complement(428644..429789)
/locus_tag="Gdia_0390"
/note="galactonate dehydratase; Provisional; Region:
PRK14017"
/db_xref="CDD:184455"
misc_feature complement(428731..429786)
/locus_tag="Gdia_0390"
/note="D-galactonate dehydratase catalyses the dehydration
of galactonate to 2-keto-3-deoxygalactnate (KDGal), as
part of the D-galactonate nonphosphorolytic catabolic
Entner-Doudoroff pathway. D-galactonate dehydratase
belongs to the enolase superfamily of...; Region:
D-galactonate_dehydratase; cd03325"
/db_xref="CDD:48200"
misc_feature complement(order(428860..428862,428935..428937,
429016..429018,429085..429087,429163..429165,
429169..429171,429241..429243,429352..429354,
429358..429360,429439..429441))
/locus_tag="Gdia_0390"
/note="putative active site pocket [active]"
/db_xref="CDD:48200"
misc_feature complement(order(429085..429087,429163..429165,
429241..429243))
/locus_tag="Gdia_0390"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:48200"
gene complement(429786..430454)
/locus_tag="Gdia_0391"
/db_xref="GeneID:6973785"
CDS complement(429786..430454)
/locus_tag="Gdia_0391"
/note="PFAM: KDPG and KHG aldolase;
KEGG: gdi:GDI2172 hypothetical protein"
/codon_start=1
/transl_table=11
/product="KDPG and KHG aldolase"
/protein_id="YP_002274802.1"
/db_xref="GI:209542573"
/db_xref="InterPro:IPR000887"
/db_xref="GeneID:6973785"
/translation="MMTFDRALDVCPLVAILRGIRPDEVLDIGQALVEAGFAIIEVPM
NSPEPLRSIRLLQDRFGDAALIGAGTVLSAEMVGQVADAGGRLIVMPHADVAVIGAAR
AAGMACTPGVATPTEGFAALAAGAAALKLFPAEQIGPGALKAWRSVFPAGTRFIPVGG
ITPDTMDPWVTAGAAGFGLGSALYRAGRSAGEVGATARLFIAGLEKAGLEKSRLEKQE
RKRT"
misc_feature complement(429834..430451)
/locus_tag="Gdia_0391"
/note="2-dehydro-3-deoxy-6-phosphogalactonate aldolase;
Reviewed; Region: PRK09140"
/db_xref="CDD:181670"
misc_feature complement(429948..430424)
/locus_tag="Gdia_0391"
/note="KDPG and KHG aldolase; Region: KDPG_aldolase;
cd00452"
/db_xref="CDD:188632"
misc_feature complement(order(429981..429983,430059..430061,
430065..430067,430245..430247,430320..430322,
430332..430334,430407..430409))
/locus_tag="Gdia_0391"
/note="active site"
/db_xref="CDD:188632"
misc_feature complement(order(430008..430013,430023..430025,
430056..430061,430086..430088,430098..430100,
430104..430115,430173..430184,430239..430241,
430245..430247,430320..430322))
/locus_tag="Gdia_0391"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:188632"
misc_feature complement(430065..430067)
/locus_tag="Gdia_0391"
/note="catalytic residue [active]"
/db_xref="CDD:188632"
gene complement(430451..431437)
/locus_tag="Gdia_0392"
/db_xref="GeneID:6973786"
CDS complement(430451..431437)
/locus_tag="Gdia_0392"
/note="PFAM: 2-keto-3-deoxy-galactonokinase;
KEGG: gdi:GDI2173 putative
2-dehydro-3-deoxygalactonokinase"
/codon_start=1
/transl_table=11
/product="2-keto-3-deoxy-galactonokinase"
/protein_id="YP_002274803.1"
/db_xref="GI:209542574"
/db_xref="InterPro:IPR007729"
/db_xref="GeneID:6973786"
/translation="MSVPHEQPGDGALIAIDWGTSALRAWRMAADGTVLDAASGPWGI
LNLPEGGFPAALVALLADWPDAAGLKLIACGMIGSVNGWHEVPYVDCPADAAALARAL
GRPHMGGAVPGIVPGLRQFQPLPDVMRGEETQIVGALALHPDLSHAATLILPGTHSKW
VTVRHGRITGFHTAMTGELFAVLSQHSILGRPAEGAEPVAEDEARAAFRRGVQAASSS
RQGVAPLLFSARSLFLTGGLGAAATRDYLSGLLVGDEIRAFLADRTEMLPTVLVGEDR
LCGLYAQAFEMLGAPVPRLVGNTAPAGLYRIAVEAGYLRPTPEEDTTHGDTT"
misc_feature complement(430538..431413)
/locus_tag="Gdia_0392"
/note="2-keto-3-deoxy-galactonokinase [Carbohydrate
transport and metabolism]; Region: DgoK; COG3734"
/db_xref="CDD:33529"
misc_feature complement(430514..431389)
/locus_tag="Gdia_0392"
/note="2-keto-3-deoxy-galactonokinase; Region: DGOK;
pfam05035"
/db_xref="CDD:203157"
gene complement(431421..432206)
/locus_tag="Gdia_0393"
/db_xref="GeneID:6973787"
CDS complement(431421..432206)
/locus_tag="Gdia_0393"
/note="PFAM: regulatory protein IclR; Transcriptional
regulator IclR;
KEGG: gdi:GDI2174 putative transcriptional regulator"
/codon_start=1
/transl_table=11
/product="IclR family transcriptional regulator"
/protein_id="YP_002274804.1"
/db_xref="GI: 