LOCUS NC_011559 6151 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Anagyris vein yellowing virus, complete genome.
ACCESSION NC_011559
VERSION NC_011559.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Anagyris vein yellowing virus
ORGANISM Anagyris vein yellowing virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Tymovirales; Tymoviridae; Tymovirus; Tymovirus anagyris.
REFERENCE 1 (bases 1 to 6151)
AUTHORS Koenig,R., Pleij,C.W., Lesemann,D.E., Loss,S. and Vetten,H.J.
TITLE Molecular characterization of isolates of anagyris vein yellowing
virus, plantago mottle virus and scrophularia mottle virus --
comparison of various approaches for tymovirus classification
JOURNAL Arch. Virol. 150 (11), 2325-2338 (2005)
PUBMED 15883655
REFERENCE 2 (bases 1 to 6151)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2008) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6151)
AUTHORS Koenig,R., Pleij,C.W.A. and Lesemann,D.-E.
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2004) Institut fuer Pflanzenvirologie,
Mikrobiologie und Biologische Sicherheit, Biologische Bundesanstalt
fuer Land- und Forstwirtschaft, Messeweg 11, Braunschweig D38104,
Germany
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AY751780.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..6151
/organism="Anagyris vein yellowing virus"
/mol_type="genomic RNA"
/db_xref="taxon:312275"
gene 135..1982
/locus_tag="AVYV_gp1"
/db_xref="GeneID:7042951"
CDS 135..1982
/locus_tag="AVYV_gp1"
/note="ORF1"
/codon_start=1
/product="putative movement protein"
/protein_id="YP_002308577.1"
/db_xref="GeneID:7042951"
/translation="MSHVVPVSPRCSVIDCSQGRIPQSSLELSCSTSPILSHSVPLDH
PKGTHSFSDCVRNPFFGFRLHPSPPRSPQGDRNVFTLQSLESPGISSIHRDVYEAIKV
QEAVLSQSELHRADQLSSNRRRLCSLPHHLSHPSNKGARVHARRSNVLHTSTSAGSVH
QGASSSAPSLLSRGSPREQLHRSLPLPQCVHLHNFGQLPALRARRAPRRKLQPATHSF
KLVENLSDKISIPKSVSESPGILGPMPLHPHPKRPPPPQRKQSGNNLLQDSRLPRASR
GHLPPPTSPAPARAKGSVRLPLHVHKSSAHSPHLRPSWVRKNSLQQASICLGHSTSVG
QSSDLRSPQLPHPPKSHLRLLPKSPGQVQAVPITAPSPLLGGEPSILGPHPSNSQAAS
EGPKRPKSGRIPLAFPEDKRSKRPIKSRKVPARHCPPAHKAELKAEKGECSSSPLSGS
RQIESLKSEARAFLPKNLPEAVELALIDNYCFNFGSFPPSFSPSTSIKPCVPSDTARR
LPQSSPPTPVPPVLEAATSRGSSPVRVPSTLPSIRVSSHRAPIDCTSISSCLSPNCDC
GASSSSSSSFNSCSSSGSIQCGVQLRNSSGDPSSSHSGTFKFRFPRFGQ"
gene 142..5451
/locus_tag="AVYV_gp2"
/db_xref="GeneID:7042950"
CDS 142..5451
/locus_tag="AVYV_gp2"
/note="ORF2; contains replication-associated proteins"
/codon_start=1
/product="polyprotein"
/protein_id="YP_002308578.1"
/db_xref="GeneID:7042950"
/translation="MSFQLALDALSSTVHRDASLNPVLNSLVQPLQSSLTQFPWIIQK
EHIPFLIASGIPSSGFGSTPHPHAVHKVIETFLLFNHWSHLASLPSTVMFMKPSKFRK
LSSVNPNFTELINYRLTDADSVRYPTTSLTLPTKELVFMHDALMYFTPAQVLDLFIKA
PHLQRLHCSLVVPPESSFTDLSLYPSVYTYTISGNSLHYVPEGHHAGSYNQPLTALNW
LKICQIKSPYLNLSVKVLESWGPCHSILIQRGLPLLSGSNLETISFKIPDCLELPEAT
FLHQPLRHRLVPREVYDSLFTYTRAVRTLRTSDPAGFVRTHSNKPQYAWVIAQAWDNL
QTYALLNSPIRPKVIFDFFLNPLGKFKLFLSQHLHPFLVVNLRYLGLIPPIAKLLLKA
PSVPKVEEFHLLFQKIKGPKGLLNLEKFPPGIAPLLTKLNSKLKKGNVHPLLYLALGK
LNLLNQKPELFYLRTCLKQLSWPSLTTTALISGLFPLLSLLLQASSPVSLQTLHDAYH
SHLHPPQFHLSWRLQPLEVAAPSEFLPLSLQSGSAPTELPLIVPPFPPASVQTVTAEP
APQAPQASIPAPPQDPSNVASSSGTAQGTQAPVTLEPSSSGSQDLANNSLAAESSEPP
QHLRSINECGALNQVPLDVPSEILNESSPKGDFPPSTLLDDPSCSGPVVDFDFLHPAD
YHNSNGSFQTRQRCQGKSQAQFPEKSCLLTSLSSQLDYTPSELRSFLCEMLPDSLLSN
QEVKNYGLSTDHLTALSFRIRFECLIHTTHAVIPYGIKNSTKVVNITYFDGPQKHFEP
HIKLIGSAPGSNPSKSNLVRSALRFQYNGSFLPFYDAHPHKISVMHAKNLVSNMKNGF
DGISSKLVGISDKSPRAKLFELDSMIDVSFPRTVDVIHIAGFPGCGKSHPMQKLLKTK
PFKHFRLSVPTNELRSEWKRDLDLPESESWRLCTWETALFKTSSILVIDEVYKLPRGY
LDLILLSDPSIQLAIILGDPLQGEYHSTHPSSSNARLPSETLRLSKYIDCYCWWTYRC
PKVVANLFGVKTFSDEEGFIHSAITHPPNLPNLVNSIATANTMQSLGHHALTISSSQG
MTYSSPVTILLDRHSTLLSPHNGLVALTRSRKGVIFIGNMYQASGHFGTSYMFTRALT
QTPIDMISAFPIFHTLPLMHEPITSRRHRLVAGNTVSSPTVNSWALQHLGRLPPHFPV
TYDKDVLLSNPILQSSAPEQRLSTLHLPPTRLPLHRDIESCNPSTSSCQALDLTPSPI
SHGFYGESFEELAAHFMPAHDPDLKEVLVSDQRSNQFPYLDVPFSLSCQPSSLLAASH
KPAKDPTLLINSIKKRLRFRKSGSPYTFTPNDLLLGVMLFESWCKAYCRNPKEVVPFN
PALFAECILNEYAQLSSKTQSAIVANASRSDPDWRYTCVRIFAKSQHKVNDGSIFGGW
KACQTLALMHDFVVLSLGPVKKYQRIIDHYDRPGFIYSHCGKTPSDLSKWSQEYLRGT
EYICNDYTSFDQSQHGEAVIFETLKMRRVSIPDCLIELHMYLKTNVSTQFGPLTCMRL
TGEPGTYDDNTDYNLAVLFSQYSISSQPIMVSGDDSVICGLPPTNPSWAKVSELLHLS
FKTERTPKPLFCGYYVGPNGCCRNPFALFAKLMISYDLDTLPETLPSYIYEFSIGHRL
GDSVQNLFSPSLLPYYSACFDLFCRRCPPSQKVILSFEPIPESFFSKALANCKWVSKT
LFSELPGKIRESLVATSRLPNYHSDPKVQYLESELLLSFNNHG"
misc_feature 253..1101
/locus_tag="AVYV_gp2"
/note="Viral methyltransferase; Region: Vmethyltransf;
pfam01660"
/db_xref="CDD:396298"
misc_feature <1702..>1944
/locus_tag="AVYV_gp2"
/note="DNA polymerase III subunits gamma and tau;
Provisional; Region: PRK14965"
/db_xref="CDD:237871"
misc_feature 2254..2535
/locus_tag="AVYV_gp2"
/note="Tymovirus endopeptidase; Region: Peptidase_C21;
pfam05381"
/db_xref="CDD:398836"
misc_feature 2818..3519
/locus_tag="AVYV_gp2"
/note="Viral (Superfamily 1) RNA helicase; Region:
Viral_helicase1; pfam01443"
/db_xref="CDD:366646"
misc_feature 4126..5241
/locus_tag="AVYV_gp2"
/note="catalytic core domain of RNA-dependent RNA
polymerase (RdRp) in the family Tymoviridae of
positive-sense single-stranded RNA [(+)ssRNA] viruses, in
the order Tymovirales; Region: Tymoviridae_RdRp; cd23247"
/db_xref="CDD:438097"
misc_feature 4624..4668
/locus_tag="AVYV_gp2"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438097"
misc_feature 4792..4863
/locus_tag="AVYV_gp2"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438097"
misc_feature 4876..4920
/locus_tag="AVYV_gp2"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438097"
gene 5444..6013
/locus_tag="AVYV_gp3"
/db_xref="GeneID:7042949"
CDS 5444..6013
/locus_tag="AVYV_gp3"
/note="ORF3"
/codon_start=1
/product="coat protein"
/protein_id="YP_002308579.1"
/db_xref="GeneID:7042949"
/translation="MDEVKPISAPQPSIPAEGSHLVNPKSAVEPHIILPFQISAAEFG
VRETSVQITLSSDPTISTYTALYRHAQLVECEAILFPNFTSSSNPTHCDIIWVPSNST
ASPKTILQTYGGSRYTLGGPITSNQTISVPLPLRSVNCMVKDSVLYTDTPRLLAFSPA
PLKPSSVPSGTLLVRGRVKLSSPLPQPSG"
misc_feature 5516..5995
/locus_tag="AVYV_gp3"
/note="Tymovirus coat protein; Region: Tymo_coat;
pfam00983"
/db_xref="CDD:395782"
ORIGIN
1 gtaatttatt ccccgttcaa ccctttcgag ccttgaacgt tttattttct ttaattttcc
61 ttacctttgc ttcgctctcc ggcccgaagc tttttctttc tgcaactcct tccgaccagt
121 tgcttctact ctagatgagc catgtcgttc cagttagccc tcgatgctct gtcatcgact
181 gttcacaggg acgcatccct caatccagtc ttgaactctc ttgttcaacc tctccaatcc
241 tctctcactc agttcccttg gatcatccaa aaggaacaca ttccttttct gattgcgtcc
301 ggaatccctt cttcgggttt cggctccacc cctcaccccc acgcagtcca caaggtgatc
361 gaaacgtttt tactcttcaa tcattggagt cacctggcat ctcttccatc caccgtgatg
421 tttatgaagc catcaaagtt caggaagctg tcctcagtca atccgaactt cacagagctg
481 atcaactatc gtctaaccga cgcagactct gttcgttacc ccaccacctc tctcaccctt
541 ccaacaaagg agctcgtgtt catgcacgac gctctaatgt acttcacacc agcacaagtg
601 ctggatctgt tcatcaaggc gcctcatctt cagcgccttc actgctctct cgtggttccc
661 ccagagagca gcttcacaga tctctccctc taccccagtg tgtacactta cacaatttcg
721 ggcaactccc tgcattacgt gccagaaggg caccacgcag gaagttacaa ccagccactc
781 acagctttaa actggttgaa aatctgtcag ataaaatctc catacctaaa tctgtcagtg
841 aaagtcctgg aatcctgggg cccatgccac tccatcctca tccaaagagg cctccccctc
901 ctcagcggaa gcaatctgga aacaatctcc ttcaagattc cagactgcct agagcttcca
961 gaggccacct tcctccacca acctctccgg caccggctcg tgccaaggga agtgtacgac
1021 tccctcttca cgtacacaag agcagtgcgc actctccgca cctcagaccc agctgggttc
1081 gtaagaactc actccaacaa gcctcaatat gcttgggtca tagcacaagc gtgggacaat
1141 cttcagacct acgctctcct caactccccc atccgcccaa aagtcatctt cgacttcttc
1201 ctaaatcccc tgggcaagtt caagctgttc ctatcacagc accttcaccc cttcttggtg
1261 gtgaaccttc gatacttggg cctcatccct ccaatagcca agctgcttct gaaggcccca
1321 agcgtcccaa aagtggaaga attccacttg cttttccaga agataaaagg tccaaaaggc
1381 ctattaaatc tagaaaagtt cccgccaggc attgcccccc tgctcacaaa gctgaactca
1441 aagctgaaaa aggggaatgt tcatcctctc ctctatctgg ctctaggcaa attgaatctc
1501 ttaaatcaga agccagagct tttctaccta agaacctgcc tgaagcagtt gagttggccc
1561 tcattgacaa ctactgcttt aatttcgggt cttttccccc ttctttctct ccttctacaa
1621 gcatcaagcc ctgtgtccct tcagacactg cacgacgctt accacagtca tctccaccca
1681 ccccagttcc acctgtcttg gaggctgcaa cctctcgagg tagcagcccc gtcagagttc
1741 cttccactct cccttcaatc agggtcagct cccaccgagc tcccattgat tgtacctcca
1801 tttcctcctg cctcagtcca aactgtgact gcggagccag ctcctcaagc tcctcaagct
1861 tcaattcctg ctcctcctca ggatccatcc aatgtggcgt ccagctcagg aacagctcag
1921 gggacccaag ctccagtcac tctggaacct tcaagttcag gttcccaaga tttggccaat
1981 aactctcttg ctgccgagag ttcagaaccc ccccagcatc tcagatccat aaatgaatgc
2041 ggggctctga atcaagtccc tctggacgtg ccttctgaga ttctcaatga gtcttcaccc
2101 aaaggcgact ttcctccaag cactctgctt gatgacccct cctgctccgg tcccgtggtc
2161 gattttgact tccttcatcc tgcggattac cacaactcca atggatcttt ccagaccaga
2221 cagcgctgcc aagggaaatc tcaggctcaa ttccctgaga aaagctgcct cctcacctct
2281 cttagctccc agctcgacta cacccccagt gagctaaggt cctttctatg cgaaatgctg
2341 ccagattcct tgctgagcaa tcaggaagtg aagaactacg gcctgagcac cgaccacctg
2401 acggcgctca gttttcgcat caggtttgag tgtttgatcc acacgactca cgcagtcatt
2461 ccttacggga tcaagaactc aaccaaggtc gtcaacatca cctattttga cggaccacaa
2521 aagcactttg aaccccacat aaagctgata ggatcagccc ctggttcaaa cccctccaaa
2581 tccaatcttg tcagatctgc cctcagattc cagtacaacg gctccttctt gccattttac
2641 gatgctcatc cccacaaaat ttcagtcatg cacgccaaga atttggtgag caacatgaag
2701 aatgggtttg acggcatcag ttccaaacta gttggaatct ctgacaaatc ccctcgagcc
2761 aagctcttcg agctcgacag catgattgat gtctccttcc ccaggacagt ggacgtcata
2821 catattgccg ggttcccagg gtgcggcaag tctcacccaa tgcaaaagct gttgaagacc
2881 aagcccttca aacacttcag actctcagtc ccaaccaatg agctcagatc tgagtggaag
2941 cgcgacttgg atctgcctga aagtgaatct tggaggctct gcacctggga gactgccctc
3001 ttcaagacct cctcaatcct ggtgattgat gaggtttata agctcccaag aggttacctt
3061 gacctcattc tcctctctga tccctccatc caactcgcaa tcattcttgg agacccgctc
3121 caaggcgagt atcattccac tcacccatcc tcttccaacg ctcgcttgcc ttctgagacc
3181 ttgaggctat ccaagtacat tgactgctac tgctggtgga cctacaggtg cccaaaagtt
3241 gtggccaatt tatttggagt taagaccttc agcgacgaag aaggcttcat ccacagcgcc
3301 atcacccatc cccccaatct tccaaatctg gtgaatagca tagcaactgc caacacaatg
3361 caaagtctgg gacatcatgc cctgacgatc tctagcagtc aaggcatgac atattcatca
3421 cctgtcacca ttcttctcga caggcattct accctactat ctcctcacaa tggactggtg
3481 gctctcacca gatctcgcaa gggtgtcatt ttcataggaa acatgtacca agcctccgga
3541 catttcggaa cttcttacat gttcactcgg gctctcactc agacacccat tgacatgatc
3601 tcagcattcc ccattttcca cactctgcca ctcatgcacg agcccatcac ctctcgccga
3661 cacaggctag ttgctggaaa cactgtttct agcccaactg tcaactcttg ggctctgcaa
3721 catcttgggc gtctcccccc ccacttccca gtgacttatg acaaggacgt gctgctgtcc
3781 aaccccatcc tccagtcttc tgctccagag caaaggcttt caactctcca ccttcctccc
3841 actcggcttc cgttgcatag agacattgag tcctgcaacc catccacctc ttcttgtcag
3901 gctctcgatc tgaccccatc cccaatctca catggcttct atggcgaaag ctttgaagaa
3961 ctggcagctc actttatgcc tgctcatgat cccgacctca aagaagtttt agtgagcgat
4021 caaaggagca accagttccc gtacttagac gttcctttct ccctctcctg ccagccctcc
4081 tctctcctgg ccgcttcaca caagccagcc aaggacccca ctctgctcat caactctatc
4141 aagaaaaggc tgaggttccg caagtctggc tcaccctaca ccttcactcc taatgatctc
4201 ctgctcggag tgatgttgtt cgagagctgg tgtaaagctt actgccgtaa tccaaaagag
4261 gtggtgccct tcaatcctgc tctgtttgcc gagtgcatct tgaatgaata tgctcagctt
4321 tcctccaaga cccagtcagc catcgttgca aatgcttcga gatctgaccc agattggagg
4381 tacacttgcg tgagaatttt tgccaagtcc cagcacaaag tgaacgacgg cagcatattt
4441 ggaggatgga aagcctgcca aaccttggct ctaatgcatg actttgtagt gctcagcctg
4501 ggccctgtca agaagtacca aagaatcatt gatcattatg acagaccagg cttcatctac
4561 agccactgcg ggaaaacccc atctgatctt tccaagtgga gccaggagta tctaagaggc
4621 acagagtaca tctgcaatga ctacacctcc tttgaccaaa gtcaacacgg agaggcagtt
4681 atttttgaaa ctctcaagat gcgaagggtt tccattccag actgtttgat agaactccac
4741 atgtacttaa agactaatgt gtcaacacag tttggaccac tcacttgcat gcgcctcact
4801 ggagaaccag gaacttatga tgacaacact gattacaacc tagctgtcct gttctcccag
4861 tactcaatct cttcccaacc aatcatggtc tctggtgatg actccgtcat ctgcggcctt
4921 cctcccacta acccctcttg ggcgaaagtc tcggagctct tgcatctgag cttcaagaca
4981 gagcgcactc caaagccgct cttctgcggg tattatgttg ggcccaacgg ctgctgcaga
5041 aaccctttcg ccctcttcgc caagttaatg atctcctacg atcttgacac tctgcctgaa
5101 actctaccat cttacatcta cgagttttca attgggcaca ggcttggaga ctcagttcaa
5161 aacctgtttt ctccttctct cctcccctac tacagcgcct gctttgacct attttgcagg
5221 cgctgcccac cttctcaaaa ggtgattctc tctttcgagc caatccctga gtcttttttc
5281 tcgaaggctc ttgcaaactg caagtgggtc tccaaaaccc tgttctcgga attgcctgga
5341 aagattagag aatctctggt tgcgacttca cgcctgccaa actaccattc tgaccctaag
5401 gtccaatacc tagagtctga attgcttctc tctttcaata atcatggatg aagtcaagcc
5461 aatctccgct cctcagcctt ctatccctgc tgaaggctct catctcgtga accccaaatc
5521 cgcagttgaa cctcacatca tcctgccctt ccaaatctct gccgccgaat tcggcgttag
5581 agagacttcc gtccagatca ccctgtcatc cgaccccacc atctcgacct acactgcttt
5641 gtaccgacat gcccagcttg tcgagtgcga agccattctg ttcccaaact tcacttcctc
5701 ttccaacccc actcactgtg acatcatttg ggtcccctcc aattccactg cttccccaaa
5761 gaccatcctc caaacttatg gaggttctcg ctacactttg ggcggcccca tcacctccaa
5821 ccaaaccatt tctgttcccc ttcccttgag gtcggtgaac tgcatggtga aagacagcgt
5881 cttatacacc gacactccca gacttcttgc cttttcacct gcccccctca agccttcttc
5941 tgtgccttct ggcacattgt tggtaagagg gagagtcaaa ctctcttccc ccctcccaca
6001 accttcgggt tgagctgatc tcttcgatcc gtctgtagtt cagggattgg ttgcccttag
6061 caacctgctc aattgtggcc ggtgccacag cctctagcac acagaggtag cattgggttc
6121 aactccccgc ctaaccgagc gtatcggtcc c
//
